BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780134|ref|YP_003064547.1| phage-related
integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
         (348 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus]
          Length = 348

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY
Sbjct: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR
Sbjct: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ
Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG
Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA
Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP
Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348


>gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 347

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 126/345 (36%), Positives = 188/345 (54%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR-E 59
            P  R PP + KE TRHGKII+Y R GHG+RIR+        F+  Y SAL         
Sbjct: 1   MPKPR-PPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGLILP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              + +    +  WL+ +Y  S HW SLA  ++   E    ++    G+  YR+I   HI
Sbjct: 60  KSKTGKLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK  P++A  FL ++  LF WA+ QE +  NP L ++RP     +G   WT+ED
Sbjct: 120 TAGVERRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           ++++   WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+K    T + + 
Sbjct: 180 VEKYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + L + PIG ETF    +  K+    F   F+     AG+ KSAHG+RK +AT 
Sbjct: 240 ILPELAETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A++GAT  +L A +GW   + A  YTK ADR RL I+  +++  
Sbjct: 300 AANSGATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKLQK 344


>gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 121/345 (35%), Positives = 186/345 (53%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPK-RE 59
            P  R PP++ KE TRH KII+Y R GHG+RIR+        F+  Y SAL         
Sbjct: 1   MPKPR-PPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGIIPP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              + +    +  WL+ +Y  S+ W  LA  ++   E    ++    G+  Y+ I  KHI
Sbjct: 60  KPKTGKLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK TP+ A  FL ++  LF WA+ Q  +  NP + V+RP     +G   WT++D
Sbjct: 120 VAGVERRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDD 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           ++++   WS G+  R+  + LLY+GLR  D+ R G +++++NI  +KT+K    T + + 
Sbjct: 180 VEKYYQRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + L + PIG ETF  +   QK     F   F+     AG+ KSAHG+RK +AT 
Sbjct: 240 ILPELAETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A++GAT  +L A +GW     A  YTK ADR RL ++  +++  
Sbjct: 300 AANSGATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKLQK 344


>gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3]
          Length = 345

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 117/345 (33%), Positives = 188/345 (54%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKR-E 59
            P  R PP + KE TRHGK+I+Y R GHG+R+R+   + +  FI  Y  A+         
Sbjct: 1   MPKQR-PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIAQLQGLILP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +    +  WL+ +Y  S +W SLA  ++   E    ++    G   Y+ I  KHI
Sbjct: 60  KSKPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK TP+SA  FL ++  LF WA+ Q  +  NP L+++RP  +  +G   WT+ED
Sbjct: 120 IAGVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           ++++   W  G+  R+  + +LY+GLR  D+ R G + +++NI  +KT+K    T + + 
Sbjct: 180 IEKYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + L + PIG ETF      +K+    F   F+     A + KSAHG+RK +AT 
Sbjct: 240 ILPELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A++GAT  +L A +GW   + A  YTK ADR +L +++ +++  
Sbjct: 300 AANSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKLQK 344


>gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 356

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/345 (30%), Positives = 176/345 (51%), Gaps = 13/345 (3%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ +   RHG   +YFR+   +++ LP  P    F+ AY +AL+G +  +  I + ++KP
Sbjct: 10  YINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSG-SEGKPRIGASKEKP 68

Query: 69  TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIR 120
            +   L+S Y  SA + + L   S+ ++    +Q          K+GD   +     H+ 
Sbjct: 69  GSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHLN 128

Query: 121 S-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
              ++     P  A   +  +R +FK A+R E +  NP   VE PK +  +GI  W+  D
Sbjct: 129 KLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDAD 188

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ F   W  G++ RLA   LLY+G R SD  R G QH++     ++  KT   + + + 
Sbjct: 189 IEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRIH 248

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               K L + P G+ TF +    +  +   FSIWFK +A  AGV ++SAHG+RK +  + 
Sbjct: 249 SELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRML 308

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           A+AG TA ++MA  G +++ +AE YT+ AD+ +LG        + 
Sbjct: 309 AEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLGDGAMELFEAK 353


>gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 160/346 (46%), Gaps = 9/346 (2%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREY 60
            P    PP +TK+  RHG I +Y R   G ++RL        F  AY   L G+      
Sbjct: 1   MPRPN-PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPP 59

Query: 61  INSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                +KP    +L WL S+Y  SA +  L   +R    +  D I    G+  Y+ +  K
Sbjct: 60  STRIERKPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPK 119

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HIR+  ++R   P SA   + ++R +F +A+  +YVA+NP  +V   K K +G   W+ E
Sbjct: 120 HIRARRDARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLE 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----I 233
           ++++F+     G+  RLA   LLY+G R SD    G   ++         K        +
Sbjct: 180 EIEKFEKKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHFTQFKGREHKPITL 239

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            + +     +++  T  GK+T+ +N   +   A  F  WF  +   A V   AHG+RK +
Sbjct: 240 DIPIIPELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAA 299

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           A+  A+ G++ HE+MA  G  T  +   YTK A +  L      R+
Sbjct: 300 ASRLAELGSSEHEIMAITGHTTSKEVMRYTKAARQKVLAAAAMARL 345


>gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 371

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 11/351 (3%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
            R PP++  ERTRHG  ++Y R+ HG RIRL      + F   Y +AL  +      + S
Sbjct: 3   KRRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAA---PALVAS 59

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              K  TLKW +  YR S+ W +L++ +R   E+ F ++I   G     +I    IR G 
Sbjct: 60  AIGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGR 119

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQ 181
           E R  TP  A  F+ +MR    W V ++ +  NP   V+        +G   WT+ ++ +
Sbjct: 120 ERRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDR 179

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVE 236
           F++ W  G++ RLAF+ LLY+GLR  D+ R G QH+++ + SI+T+K         + + 
Sbjct: 180 FEARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +       LA TP G+  F IN   Q      F  WF+    +A    SAHG+RK  AT 
Sbjct: 240 ILAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +A+ GA+  +LMA +GW T   A+ YT+ ADR RL    ++ +  V  +++
Sbjct: 300 AAEKGASERQLMAIFGWTTGKMAQHYTRSADRARLARDAAQLLLPVQATNE 350


>gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4]
 gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4]
          Length = 344

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 161/339 (47%), Gaps = 6/339 (1%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64
           R P +      RHGKI +Y+R+       L   P    F+ +Y  A+ G    +  +   
Sbjct: 3   RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAGE---KIEVGKS 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +  P T+  L+  Y K++ +  L+ +++ ++    ++   + G      +  ++++  + 
Sbjct: 60  KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  TP++A   L  + +L   AV  ++   +P   V++ + K+EG   W +  ++QF +
Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +   G++  LA   LLY+G R SD  R G QH+++   SI  QKTG ++ +     F  +
Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
           L   P+   TF      +      F+ WF+    +AG+    S HG+RK +    A+AG 
Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           T H++MA  G +++D+   YT  A R  L  + +  +  
Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAAPHLQG 338


>gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4]
 gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4]
          Length = 356

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 117/350 (33%), Positives = 181/350 (51%), Gaps = 12/350 (3%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST----FIPAYMSALTGSTPK 57
            P  RLP  V  E++RHG++ Y+FR GHG RIRLP  + +     F+ AY SAL G+ P 
Sbjct: 1   MPKSRLP-HVVVEKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPP 59

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  R    TL WL  +Y++SA + SL+  ++ +  +    I+ KSG    R IT +
Sbjct: 60  LPK-ARSRHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITER 118

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173
            +R G E R  TP +A  FL +M+  F W +        +  +P  +V++   KTEG   
Sbjct: 119 AVRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHT 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT ++++ ++S    G+  RLA + L+Y+GLR  D  + G QH+++ + + KT K G  +
Sbjct: 179 WTVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWV 238

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK-SAHGVRK 291
            + +       +  +P    TF      +  ++   F  WF  +  +AGV K  AHG+RK
Sbjct: 239 HLPILPALQNSIDASPTNDLTFLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRK 298

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             A ++A+ GAT  +LMA +GW T D A  YTK A R +L       +  
Sbjct: 299 AGAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKLSATAIDLLDR 348


>gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 370

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 7/340 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN-SPRK 66
             V ++  RHG +  Y R+    ++RL   P    F+  Y +A+ G+TP+   +    R 
Sbjct: 16  KHVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVPLDRRG 75

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              + KWL  +Y  SA +  L+  ++       D+I  KSG   Y  +  +H+R   +  
Sbjct: 76  SKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRRMRDEM 135

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++QF+   
Sbjct: 136 ADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQFEEHH 195

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242
             GS+PRLA   +LY+G R SD  R G QH+++   ++   K        +++ +     
Sbjct: 196 PIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPVLPELK 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +L  TP G   F +    +   +  F  WF+ +  +AG+   SAHG+RK  A ++A+ G
Sbjct: 256 AVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAALAAENG 315

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +LMA +GW T+ +A  YT+ A +  L     + +S 
Sbjct: 316 ATERQLMAIFGWTTMKEASRYTRAARQRVLAASGMKLLSR 355


>gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1]
          Length = 370

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 164/340 (48%), Gaps = 7/340 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
             V ++  RHG +  Y R+    ++RL   P    F+  Y  A+ G+TP+       R+ 
Sbjct: 16  KHVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGPLERRG 75

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              + KWL  +Y  SA +  L+  ++       D+I  K+G   Y  +  +H+R   +  
Sbjct: 76  SKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRRMRDEM 135

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +A  F+ ++R ++ +AV  E    NP   V   K K +G   WT E+++QF+   
Sbjct: 136 ADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQFEDHH 195

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242
             GS+PRLA   +LY+G R SD  R G QH+++   ++   K        +++ +     
Sbjct: 196 PIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPVLLELK 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +L  TP G   F +    +   +  F  WF+ +   AG+   SAHG+RK  A ++A+ G
Sbjct: 256 AVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAALAAENG 315

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AT  +LMA +GW T+ +A  YT+ A +  L     + +S 
Sbjct: 316 ATERQLMAIFGWSTMKEASRYTRAARQKVLAASGMKLLSR 355


>gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 716

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 18/351 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTP---KREYINSP 64
            ++ ++  RHG +  YFR    R+IRL   P    F   Y S +        K     S 
Sbjct: 12  RYLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSV 71

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKIT 115
              P TL WL++ +R S  + +L  +++ +     + ++             +F   +I 
Sbjct: 72  SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +    + +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W 
Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
            ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K       
Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            I + +       +   P G   + +    +      F  WF  +  +AG+   SAHG+R
Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++       +  
Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEK 362


>gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 367

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 158/354 (44%), Gaps = 13/354 (3%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR 65
           LP +V  +  RH  + YYFR+    ++RL   P    F+  Y   L G  P+R+  ++P 
Sbjct: 10  LPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRSAP- 68

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             P +   L   Y  S  + SL V++R       D+I    G      +  +H+R+    
Sbjct: 69  AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTLRNG 128

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++ TP++A   L +++ LFKWA      + +P  +V+  K   +G  PW+  +++ +++ 
Sbjct: 129 KRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAYEAA 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGF 241
              G+  RLA E LLY+  R  D  R G  +L    F     K        I + +    
Sbjct: 189 HLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVHPDL 248

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            + +A        F + +  +      F   FK    +AG+   SAHG RK +A   A  
Sbjct: 249 AEAIAAAQPSGAIFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARLATR 308

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI------SSVVDSDDP 348
           GATAH++M+  G +++ + E YT+ A R ++       +       S + ++ P
Sbjct: 309 GATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362


>gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
 gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP
           105476]
          Length = 345

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/342 (33%), Positives = 178/342 (52%), Gaps = 5/342 (1%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKREYIN 62
            R PP++  ERTRHGKII+Y R GHG R R+        F+  Y  AL        +   
Sbjct: 3   KRRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRK 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I   HI   
Sbjct: 63  QTRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHILDA 122

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQ 181
           V+ R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK    EG  PW +ED+++
Sbjct: 123 VDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDVEK 182

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239
           +   WS  +  R+  + LLY+GLR  D+ R G + +++NI  +KT+  +  T + + +  
Sbjct: 183 YYHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILP 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              K L   P+G ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+
Sbjct: 243 ELAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AGAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 303 AGATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKRE 59
            P  R PP + KE TRHGK I+Y R GHG+R R+        F+  Y  AL         
Sbjct: 1   MPKPR-PPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPR 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I   R    +  WL+ +Y +S  W + A +++   +   + I +  G   Y+ I  +HI
Sbjct: 60  QIKRTRLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
              VE R+ TP++A  FLT++  LF WAV    +  NP  +++ PK   TEG  PW +ED
Sbjct: 120 LDAVERRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           + ++   W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K    T + + 
Sbjct: 180 IDKYHQRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     K L   PIG ETF    + +K+    F   F+     AG+ KSAHG+RK +AT 
Sbjct: 240 ILPELAKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A+AGAT  +L A +GW   D A  YTK ADR RL I+  +++  
Sbjct: 300 AANAGATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344


>gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59
            P  R PP + KE TRHGK I+Y R GHG+R R+        F+  Y  AL+     K  
Sbjct: 1   MPKPR-PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +    +  WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI
Sbjct: 60  KSKPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  +  +G   W +ED
Sbjct: 120 IAGVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           + ++   W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K    T + + 
Sbjct: 180 INKYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     K L   P+G ETF      +K+    F   FK    +AGV KSAHG+RK +AT 
Sbjct: 240 ILPELAKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A+AGAT  +L A +GW   D A  YTK ADR RL I+  +++  
Sbjct: 300 AANAGATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344


>gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1]
 gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1]
          Length = 345

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/342 (33%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSAL-TGSTPKREYIN 62
            R PP + KE TRHGK+++Y R GHG R R+        F+ +Y  A+        + + 
Sbjct: 3   KRRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKRMT 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             R    +  WL+ +Y +S  W + + +++       + + +  G+  Y+ I  +HI   
Sbjct: 63  QTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILDA 122

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181
           V+ R+ TP++A  FLTS+  LF WAV    +  NP L+++ PK   +EG++PW +ED+ +
Sbjct: 123 VDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDIDK 182

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239
           +   WS GS  R+  + LLY+GLR  D+ R G + +++NI  +KT+  +  T + + +  
Sbjct: 183 YYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILP 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+
Sbjct: 243 ELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AGAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 303 AGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59
            P  R PP + KE TRHGK I+Y R  HG R R+        F+  Y  AL+        
Sbjct: 1   MPKQR-PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQEFVDDYKKALSELQGYTLP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              S +    +  WL+ +Y  S  W  L+  ++   E    ++    GD  Y+ I   HI
Sbjct: 60  KSKSDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  +  EG   WT+ED
Sbjct: 120 VAGVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           + ++   W  G+  R+  + LLY+GLR  D  R G + + +NI  +KT+K    T + + 
Sbjct: 180 INKYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     K L   PIG ETF      +K+    F   F+    +AG+ KSAHG+RK +AT 
Sbjct: 240 ILPELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A+AGAT  +L A +GW   + A  YTK ADR RL +++ +++  
Sbjct: 300 AANAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKLQK 344


>gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
 gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup]
          Length = 345

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/342 (33%), Positives = 182/342 (53%), Gaps = 5/342 (1%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
            R PP + +ERTRHGK+I+Y R GHG R R+        F+  Y  A+  +         
Sbjct: 3   KRRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKR 62

Query: 64  PRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +    +  WL+ +Y +S  W + + +++       + + +  GD  Y+ I  +HI   
Sbjct: 63  RTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHILEA 122

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181
           V+ R+ TP++A  FLTS+  LF WAV    +  NP  +++ PK   +EG+ PW +ED+ +
Sbjct: 123 VDRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDIDK 182

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPD 239
           +   WS G+  R+  + LLY+GLR  D+ R G + +++NI  +KT+  +  T + + +  
Sbjct: 183 YYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPILP 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              + L + PIG ETF       K+    F   F+     AG+ KSAHG+RK +AT +A+
Sbjct: 243 ELEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAAN 302

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AGAT  ++ A +GW     A  YTK ADR RL I+  +++  
Sbjct: 303 AGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344


>gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 345

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 107/345 (31%), Positives = 173/345 (50%), Gaps = 8/345 (2%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPY-PHESTFIPAYMSALTGSTPKRE 59
            P  R PP + +  +RHGK+ ++ + +    + R+      + F+ AY +A+TG   K  
Sbjct: 4   MPRPR-PPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEYGSAEFMAAYDAAVTGGAAKP- 61

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                +    TL+W    YR+S  W   L+  +R   E+    +++ +       I    
Sbjct: 62  -TPEIKAPKGTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAA 120

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKE 177
           I  G++ R  TPS A  FL +M   F W  R + V+ NPC   E PKR   G  + W+ +
Sbjct: 121 IADGIDRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLD 180

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           D++ ++  W  G++ R+  +  +Y+GLR  D+   G QH++N + S++T+K G  + + L
Sbjct: 181 DVELYEKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPL 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
            D   + L   P+G   +      +          FK     AGV +KSAHG+RK +AT 
Sbjct: 241 LDVLKRTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATR 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +AD GATAHELMA + W  + +AE YT+ ADR RL  +   ++  
Sbjct: 301 AADNGATAHELMAIFRWVDIKEAELYTRAADRKRLAAQAMGKLEK 345


>gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C]
          Length = 349

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/347 (34%), Positives = 184/347 (53%), Gaps = 7/347 (2%)

Query: 1   MT-PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPK- 57
           MT P  R PP + K+ T+HGKI++Y R GHG+R R+        FI  Y S+L       
Sbjct: 1   MTMPKPR-PPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLAELHGII 59

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  +    +  WL+ +Y  S +W +LA  ++   E    ++    G+  YR+I   
Sbjct: 60  PPKPKPGKLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKKA 119

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176
           HI +GVE RK  PS+A  FL ++  LF WA+ Q  +  NP + V++P     +G   WT+
Sbjct: 120 HIIAGVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWTE 179

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234
           ED++++   WS G+  R+    LLY+GLR  D+ R G +  ++NI  +KT+K    T + 
Sbjct: 180 EDVEKYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDVF 239

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           + +     + L + P+G+ETF       K+    F   F+     AG+ KSAHG+RK +A
Sbjct: 240 LPILPELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLAA 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           T +A+AGAT  +L A +GW     A  YTK ADR +L ++  +++  
Sbjct: 300 TRAANAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKLQK 346


>gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 405

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 18/349 (5%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           RLP F  ++  RHG +  Y R+    ++RLP  P    F+ AY +AL G++  +      
Sbjct: 4   RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSEDKPRDRYA 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKIT 115
              P T KWL  +Y  SA + +L   ++    +  +    +           DF   ++T
Sbjct: 64  TL-PDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPLARLT 122

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRP 173
              IR   + +   P  A   + ++R  FKW         + NP   V      +EG   
Sbjct: 123 PAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPEVALASHNPARDVGYIATASEGFHT 182

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           W+ +++++F +    GS+  LA   LL++G R SD+   G QHLQ         K     
Sbjct: 183 WSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHKGRNAK 242

Query: 234 TVELPDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHG 288
            + L           +   P     F +    +   +  F  WFK +  +AG ++ SAHG
Sbjct: 243 PMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLHCSAHG 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +RK  AT++A+ GAT  +LMA +GW+T   AE YT+ A++ RL      
Sbjct: 303 LRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRLAGGAMH 351


>gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1]
          Length = 347

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 6/345 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP-KRE 59
            P  R PP + KE TRHGK I+Y R GHG+R R+        F+  Y  AL+     K  
Sbjct: 1   MPKPR-PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLP 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +    +  WL+ +Y  S  W +LA  ++   E    ++    GD  Y+ I   HI
Sbjct: 60  KSKPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHI 119

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178
            +GVE RK TP++A  FL ++  LFKWA+ Q  +  NP   V+RP  +  +G   W +ED
Sbjct: 120 IAGVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEED 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVE 236
           + ++   W  G+  R+  + LLY+GLR  D  R G + + +N+  +KT+K    T + + 
Sbjct: 180 INKYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLP 239

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     K L   PIG ETF      +K+    F   F+    +AGV KSAHG+RK +AT 
Sbjct: 240 ILPELTKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATR 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +A+AGAT  +L A +GW     A  YTK ADR RL +++  ++  
Sbjct: 300 AANAGATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQK 344


>gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H]
 gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H]
          Length = 332

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 93/327 (28%), Positives = 154/327 (47%), Gaps = 6/327 (1%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
             YFR     R  LP   +  F PAY +A+       +    P +   T   L  ++ KS
Sbjct: 2   RVYFRHPRLPRQVLPPVDDPAFWPAYHAAIA---QIPKDEPRPIRGTGTFARLCEDWLKS 58

Query: 82  AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             + SL  ++++   +     +      F       KHIR+ +      P+S  ++L   
Sbjct: 59  NSFLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIF 118

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            +LF+ A+ Q+ + ++P   V R K + EG RPWT+ ++ QF++ W  GS+ R AF  LL
Sbjct: 119 GILFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           Y+G R SD  + G   +++ + ++  QKTGT + V +       LA T   K  +     
Sbjct: 179 YTGQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVP 238

Query: 261 KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +K ++       K     AG+    SAHG+RK +A   A+AG T H++ A  G KT+ +
Sbjct: 239 GRKPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAE 298

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345
            E YT+  D+ RL  +    + +V  +
Sbjct: 299 VERYTRSVDQKRLAKQAVALLEAVKPN 325


>gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 347

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/350 (33%), Positives = 183/350 (52%), Gaps = 12/350 (3%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST----FIPAYMSALTGSTPK 57
            P  RLP  + +E++RHG++ ++FR G G RIRLP  ++      F+ AY +ALTGS   
Sbjct: 1   MPKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSD-- 57

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  R    TL WL+ +Y +SA + +LA  +R S+      I  KSG      IT +
Sbjct: 58  VPKKPRSRYPQNTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173
            IR   E+R  TP++A  FL  M+V F W +      + +  +P   V+R   KTEG   
Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           WT E+++++++ W  G+  RLA + L  +GLR  D  + G QH++     ++  KTG  I
Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSAHGVRKF 292
            + +     + +  T  G+ T  +N   Q   NA  F  WF     +A V   AHG+RK 
Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +AT+ A+ GAT H++MA +GW +   A  YT+ A+R ++ +++   +   
Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHGELLDRK 347


>gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278]
 gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278]
          Length = 358

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 163/348 (46%), Gaps = 8/348 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             RLPP V +   + G + Y +R G G R++LP P    F  AY +A+ G+   R     
Sbjct: 3   RRRLPPNVERNVVK-GHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRP--AP 59

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +  P +L  LI+ Y  S  + SL  +S+  +    + +    G      +T + I + +
Sbjct: 60  SQDAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKI 119

Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                + P + +  L  +R+L + A   +++ +NP   ++R   K++ IR WT  ++  F
Sbjct: 120 LKPLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKR--GKSKEIRGWTDNELAAF 177

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           ++ W  G++ R A+E +L  G   +D+         N +F    +KT   + V+  D   
Sbjct: 178 EARWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLC 237

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
           + LA  P    T  +    +  +   FS W +   T AG+      HG+RK    + ADA
Sbjct: 238 QALAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADA 297

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           GATAHE+MA  G  T+ +AE YT+ ADR R G +   ++     +  P
Sbjct: 298 GATAHEIMAALGHMTLAEAERYTREADRRRGGKRAIVKLEDHKANRIP 345


>gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 426

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 9/345 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  
Sbjct: 7   KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+
Sbjct: 65  PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++   
Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHP 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----- 242
            G++ RLA   LLY+  R  D  R G +H+          K      V +          
Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            + ++ P    +F   +  +  +   F   FK    +A +   SAHG RK +A   A+ G
Sbjct: 245 AIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349


>gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42]
 gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42]
          Length = 404

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 18/359 (5%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTP 56
             RL  +   +    G   YY RK   +++R+              F+ AY +AL     
Sbjct: 3   KTRL-RYCVYDPDPRGNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDG 61

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
                     +  T  WL+ +Y +S  +  L V ++    S   +    +G   Y+K   
Sbjct: 62  GAAPSKKEVPREDTFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQ 121

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPW 174
           + + +    RK TP +A + +  +R LF WA++Q+   ++ NP   +++    +EG   W
Sbjct: 122 QDVANSQLKRKETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTW 181

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           T +++  ++++   G+  RLA E ++  G R SD+   G QH          +K      
Sbjct: 182 TPDEIDTYRAYHPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKP 241

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
             I V +    +  L  T  G   + +    +           +     AG+   SAHG+
Sbjct: 242 TVIEVPMMPDLVDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGL 301

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           RK +A I A++GA+A E+ A +GW  ++ AETY + A + ++      R++   D  +P
Sbjct: 302 RKAAAVIFAESGASAPEMCAVFGWSKLETAETYIRNAQKRKMASNAFARLA---DYRNP 357


>gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 426

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 9/345 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            FV  +  RHG + YYFR+    + RL   P    F+  Y   L G  P        R  
Sbjct: 7   KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P + + +   Y  S+ +G+L  +++       +      G    R++  +H+R   +SR+
Sbjct: 65  PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +++ +++   
Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHP 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM----- 242
            G++ RLA   LLY+  R  D  R G +H+          K      V +          
Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            + ++ P    +F   +  +  +   F   FK    +A +   SAHG RK +A   A+ G
Sbjct: 245 AIASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349


>gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 352

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 8/348 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62
             + PP+   +        +YF +    R+R+P  P    F+  Y  A   +  K   I 
Sbjct: 6   KSKAPPYCHWKTNGRNFGCWYFERPGYPRVRVPGLPWTPEFMAVYEKA---TKAKPAEIG 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           + R  P +L  +I  Y  SA W  LA +++ ++    + +    G      +  +HI+  
Sbjct: 63  ASRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKL 122

Query: 123 VESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +E +     +  A + L+ + +L   A+    +  NP  +V++ K +  G   WT++++ 
Sbjct: 123 IEKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVA 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F++ W+  ++ RLAFE LL +  R SD  +     +     ++  QKT   + + L   
Sbjct: 183 AFRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPE 242

Query: 241 FMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
               LA  P+      +     +      F ++ K     AG+ + SAHG+RK +A   A
Sbjct: 243 LQAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLA 302

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +AG T H++ A  G  T+ + E YTK A ++RL       +    D  
Sbjct: 303 EAGCTVHQIAAITGHATLREIERYTKEASQLRLAEAAFATLRGTSDER 350


>gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 411

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 18/351 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTP---KREYINSP 64
            ++ ++  RHG +  YFR    R+IRL   P    F   Y S +        K     S 
Sbjct: 12  RYLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSV 71

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKIT 115
              P TL WL++ +R S  + +L  +++ +     + ++             +F   +I 
Sbjct: 72  SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +    + +K  P +A   + ++R +FKWA  +++   NP +S+ +P+  + G   W 
Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
            ++++ F+     G++  LA   +LY+G R SD+ + G QH Q +       K       
Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            I + +       +   P G   + +    +      F  WF  +  +AG+   SAHG+R
Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++       +  
Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEK 362


>gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 341

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 125/342 (36%), Positives = 193/342 (56%), Gaps = 6/342 (1%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60
            P  R PP++  E +RHG+ ++YFRKG G R+RLP       F  AY +A+ G    ++ 
Sbjct: 1   MPRPR-PPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKP 59

Query: 61  INSPRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 K  +L+WLI +YR +S+HW  LA+ +R   E  F  +I  +GD  Y  +T   I
Sbjct: 60  AG---AKSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKI 116

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             G + R+ TPS+A  FL +   LF WA   ++VA NPC  V+   ++T+G RPWT+ D+
Sbjct: 117 VEGRDRRRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADI 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           ++F++ W  G++ RLA   L+Y+GLR  D  + G QH+++ + S++T+KT T + + +  
Sbjct: 177 ERFEARWPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLP 236

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              +++  +P G   F      + + A  FS  F      AGV+ S HG+RK +AT +A+
Sbjct: 237 ALAEIIDKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAAN 296

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AGAT  EL A +GW     A  YTK ADR RL  +   +++ 
Sbjct: 297 AGATVAELEALFGWTGGQMASHYTKEADRARLARQAIAKLAK 338


>gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
 gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 11/350 (3%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGST-PKREYIN 62
            RLPP+V +   + G     FR+G G RIRLP  P  S F+ AY SAL G     R  + 
Sbjct: 3   RRLPPYVERNHVK-GHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELR 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           SP     T+  LI+ Y +S+ +  L   S+  +    + +  + G      ++ + I +G
Sbjct: 62  SPVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITG 119

Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +     P +A+  L  +R+L + A+   ++  +P + ++RPK +   IR WT+++++ 
Sbjct: 120 ILQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPKLQR--IRSWTEDEIEL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F+  W   ++ RLAFE  L +G R SD  R    H+         Q+      +      
Sbjct: 178 FRKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRD 237

Query: 242 M-KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           +   LA+      +       Q  +   FS W +   T AG+      HG+RK +    A
Sbjct: 238 LLSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLA 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +AGATA  +M+  G  T+ +AE YT+ AD+  L +    R+     +D P
Sbjct: 298 EAGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347


>gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 343

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/340 (25%), Positives = 159/340 (46%), Gaps = 10/340 (2%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P FV+  R RHG + + FR+    + +      +    A+ +    S  + + I   R K
Sbjct: 5   PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWWAWYA--ESSEARPKAIGQDRTK 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           P ++  L   Y  SA +  L  N++ +++   D+     G   + ++  +HIR  ++   
Sbjct: 63  PGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDDMA 122

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  +T + A   L  +R + ++A+ +  ++++P + V   K +T G   WT++++ 
Sbjct: 123 REMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDEIA 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F++ W  GS+ RL F+ LLY+  R  D  +  V  +  +  +++  KTG +I +     
Sbjct: 183 MFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQHPR 242

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               LA + IG          +      F  W K  A KAG+   SAHG+RK  +   A+
Sbjct: 243 LQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRLAE 302

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AG + HE+ A  G +++ + E YT+ A+R  L     +R+
Sbjct: 303 AGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRV 342


>gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 373

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 11/346 (3%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYIN 62
             RL  +V ++  RHG +  Y+R+ +GR++RL  P     F+  Y +A  G    +    
Sbjct: 7   KFRL-KYVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAGPKEAKTD-K 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIR 120
           + R  P + +WL  +Y KSA +  L   ++    S  ++       GD  + ++  +HIR
Sbjct: 64  AGRVVPKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIR 123

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     P +A   + ++R L+++A+R ++   NP   VE  K   +G   WT  +++
Sbjct: 124 VRRDEMADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIE 183

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237
           +++     G+  RLA    LY+G R +D    G QH+++        K      V +   
Sbjct: 184 KYEEAHPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIP 243

Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                 +++  TP G  TF +    +   +  F   F+     AG+   S HG+RK +A 
Sbjct: 244 VIPELQQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAA 303

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             A+ G T  E+M+  G +T  +   YT+ A +        RR+S 
Sbjct: 304 RLAELGCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLSR 349


>gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
 gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 31/376 (8%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG--HGRRIRLPY-PHESTFIPAYMSALTGSTPKR 58
            P  R P ++ KE  RHG+ ++Y R     G+R R+      + F   Y  AL G   + 
Sbjct: 5   MPRPRKP-YLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRP 63

Query: 59  EYINSPRKKP-----TTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
                P +        +LKWL  EY+ K+  W  +  ++     S    ++  +G+    
Sbjct: 64  RLAIDPSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAA 123

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-I 171
            I  +HI  G+  R   PS+A  FLT+MR +F WAV Q+ +A++P   ++ PK       
Sbjct: 124 AIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGF 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--- 228
             W+  D++++   W  G++ R+  +  L++G R  D+   G   +   +          
Sbjct: 184 VTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKL 243

Query: 229 ----------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                               +T  + D   + L   P+G ET+      + M        
Sbjct: 244 EQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNV 303

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           FK K   AG+ N+SAHG+RK +AT++A+ GAT  EL A +GW     A  YT+ A+R +L
Sbjct: 304 FKEKCVAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKL 363

Query: 332 GIKNSRRISSVVDSDD 347
                 ++   + S+D
Sbjct: 364 AYGGVAKLERKIGSED 379


>gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 385

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 9/338 (2%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60
            P  R PP + +E TRHG +++Y R G G+R R+        F   Y  A+ G    +  
Sbjct: 5   MPRPR-PPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEAFWRDYRLAVEG----KPT 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL WLI +Y +SA W  L+  +R    + +  I   +G    + +    I 
Sbjct: 60  EAPKAAATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASIL 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKED 178
           +G + R+  P +A  FL +MR LF WAV ++Y+ INP L V+      +  G   WT+E+
Sbjct: 120 AGRDRRRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEE 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + +F+S W  G++ RLAF+ LLY+GLR  D+ R G QH++   FSI+T+KTG ++T  + 
Sbjct: 180 LARFESRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVL 239

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + +  T  G   F             F  WFK    +AGV  S+HG+RK  A  +A
Sbjct: 240 LPLAQSITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAA 299

Query: 299 DAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
           +AGAT  +L A +GW     ++ TYT+ AD  RL  + 
Sbjct: 300 EAGATEAQLNALFGWAPGSRESATYTRTADNARLAREA 337


>gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 359

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 8/344 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR-- 65
            +  ++  RHG +  Y R+   +++RL   P    F+  Y  AL G           R  
Sbjct: 16  RYTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVP 75

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+WL  +Y +SA +  L   ++       D I ++ GD  Y  +  +H+R   + 
Sbjct: 76  AGKGTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDE 135

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  TP +A   + ++R +F +A+  +    NP   V   K  +EG   W  E+++QF+  
Sbjct: 136 KSDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEER 195

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGF 241
            S GS+ RLA   LLY+G R SD    G QH+++  F+    K        +++ +    
Sbjct: 196 HSVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPEL 255

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
             ++  TP G  T+ +    +   A  F  WF+ +  +AG+   SAHG+RK +A   A+ 
Sbjct: 256 KAIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAEL 315

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           GA+  E+MA  G  T  +   YT+GA +  L      R     D
Sbjct: 316 GASESEIMAVTGHTTSKEIVRYTRGARQKVLAANAMARFGENKD 359


>gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
 gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A]
          Length = 316

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 5/299 (1%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + AY +AL G  P+ +          TL+WL + YR+S+ W  L+  +R   E+    ++
Sbjct: 1   MEAYHAALAGERPQPK----SEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKHVL 56

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           + +G      IT   I +G + R  TPS A  F++++R LF WA+    V  +P   V+R
Sbjct: 57  KSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGVKR 116

Query: 164 PKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           PKRK     + WT++D+++F+  W+ G++ R+ F+  L++GLR  D+ + G QH+++   
Sbjct: 117 PKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDGSI 176

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           SI T+KTG  +T+ +       L   P+G   F        M        F+     AG+
Sbjct: 177 SINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSAGI 236

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            KSAHG+RK +AT +A+ GAT  EL A +GW     A  YT+  +R  L    + ++S 
Sbjct: 237 TKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREALSKGAAAKMSR 295


>gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516]
 gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516]
          Length = 375

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 10/347 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS-PRK 66
            +V ++  RHG +  Y+R+ +G + RL  P     F+  Y  A  G    R +     R 
Sbjct: 11  KYVVEDVDRHGNVRLYYRR-NGTKTRLRGPVGSPEFLIDYRRAAAGPKEVRGHKARVGRV 69

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124
            P +LKWL  +Y KSA +  L   ++    S  ++       GD  +  +  +HIR   +
Sbjct: 70  VPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIRVRRD 129

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +A   + ++R L+++A+R ++   NP   VE  K + +G   WT  ++++F+ 
Sbjct: 130 EMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIKKFED 189

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDG 240
               GS  RLA    LY+G R +D    G QH+++        K        + + +   
Sbjct: 190 AHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIPVIPE 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
             +++  TP G   F +    +   +  F   F+     AG+   S HG+RK +A   A+
Sbjct: 250 LQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAARLAE 309

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            G T  E+MA  G  T  +   YT+ A +        RR +   +SD
Sbjct: 310 LGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSD 356


>gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 374

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 132/345 (38%), Gaps = 8/345 (2%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M       P       RHG   + +R                F   Y +AL     K + 
Sbjct: 2   MRKRSDKYPGAKPYFDRHGNRRWRYRCKGFSAELGTDYGSDEFERRYQAALNHQKEK-QA 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             + R  P T   L++ + +   +  L   ++  + +  + + R+ G      +  +H+ 
Sbjct: 61  NGAGRSVPGTFDDLVARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVL 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   TP+ A + L  +  L K AV+ E+ + NP   VE  +  + G   WT++++ 
Sbjct: 120 EIKAQLSSTPAQANKTLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIA 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITV 235
           +F +    GS   LA   +LY+G    D+   G  +++      +  KT        + +
Sbjct: 180 RFYAKHERGSLAYLAMTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNI 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
            +       L   P G  TF   N KQ  +        +    KAG+   S+HG+RK   
Sbjct: 240 PVHPTLADALETVPEGAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAIC 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A+AG T  E+M+  G  T+  A+ Y +   R  L      R+
Sbjct: 300 RRIAEAGGTPFEIMSVSGHITLAMAQHYCEAFGRKNLADSAVHRL 344


>gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 359

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 10/349 (2%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYIN 62
             +LPP V +   + G +   FR G G RI+LP  P+   F  AY  A+  ++       
Sbjct: 3   RRKLPPNVERNVVK-GHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAIGKTSQAP---T 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +    ++  LI  Y  S  + +L   S+  + S  DQ+ ++ G      +T + I++ 
Sbjct: 59  PAKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQTQ 118

Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + +    TP +A+  L  +R+L + A   E++  +P   ++RPK  ++ IR WT  +   
Sbjct: 119 ILDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPK--SKEIRSWTDSECTA 176

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F+  W  G++ R A+E +L  G   +D  R        + F    QKTG  + + +    
Sbjct: 177 FEKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKRC 236

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
              +   P    T       +      FS + +     AG+      HG+RK      AD
Sbjct: 237 RDAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLAD 296

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            G +AH++MA  G  T+ +AE YT+ ADR R G +  + +    ++  P
Sbjct: 297 RGVSAHDIMAALGHTTLGEAERYTREADRRRGGRRAGKALDDQTENKTP 345


>gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 375

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 146/349 (41%), Gaps = 7/349 (2%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+      P VTK   RHGK+ + FRK     + LP P+ S       +           
Sbjct: 8   MSRKRNPFPGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFR--AAYEAAVAGAATP 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    +L WLI  Y  S  + +L+   R       D +   +G   + ++ T+H+ 
Sbjct: 66  AARSTAAYGSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVE 125

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +  +   P +A     ++ +LF +A++        NP    +R K   +G   WT  +
Sbjct: 126 ALMAKKA-GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAE 184

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + QF ++  EG+  RLA   +L +G    D  R G Q++       + +K+  I   E+ 
Sbjct: 185 IAQFLAYHGEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEIL 244

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                 L   P  +  F + N +       F+ WFK     AG+   SAHGVRK  AT  
Sbjct: 245 PELAAELRHVPPAQMLFLMLNGR-PFKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNI 303

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AD+G +  E+M+     T  +A TYTK A+R RL      R+S      
Sbjct: 304 ADSGGSEWEVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGAKAEQ 352


>gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a]
          Length = 299

 Score =  166 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 26/286 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124
            T+  LI ++  +      L+ N+  ++ +  +Q    + ++G  D + +  + I   +E
Sbjct: 1   MTINDLIEDFLIALRVEQGLSENTIKTYHNVLNQFQMILSEAGIEDIQAVKRQDIIQQLE 60

Query: 125 SRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      +      +L+++R  FK+ +    +  NP  ++  PK+K +  +  + E++ +
Sbjct: 61  NLNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEEVDR 120

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                      G + R   E L  SGLR S+     +     ++       K      + 
Sbjct: 121 LLEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKERIIP 180

Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           L +     L                  +   ++N+  + ++        K     AG+ K
Sbjct: 181 LGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKKLKQYIQAAGITK 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             S H +R   AT   + GA    +    G   +   + YT    +
Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQ 286


>gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 299

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 7/300 (2%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  Y  AL G   ++    S      T KWLI +YR S H+ SL   +R   ++ F QII
Sbjct: 1   METYADALAGRLRQKGDHGS----KGTFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQII 56

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           + SGD  + KIT +H+++ V+ R   PS AI FL ++  +FKWA   E +  NP + V R
Sbjct: 57  KDSGDIPFAKITRRHLQNAVDRRSSKPSVAISFLKAISPVFKWAETCELITKNPVIGVCR 116

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P  +T G+  WT E ++ ++      +  RLA E +L+ GLR SD  R G QH+++++ S
Sbjct: 117 PPIRTIGMHTWTMEQVEVYRKHHPINTMARLALELMLFLGLRRSDVIRIGKQHVKDSVLS 176

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGV 282
           I T+KTG  + V + +   K L    + + TF I    +  +++  F  WF+ +  +AG+
Sbjct: 177 IHTKKTGKQVHVPIFEDLQKCLDAVGVDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGL 236

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                AHG+RK  ATI+A+AGA+ HELMA +GW   D A+ YT+  +  +L  K ++ I+
Sbjct: 237 PDKCRAHGLRKAGATIAANAGASPHELMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIA 296


>gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 332

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 15/321 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            G++  YFR   GR +RLP  P+   +   Y   + G     +          T + LI 
Sbjct: 13  KGRLYQYFR-KDGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF--------TFEKLIQ 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            Y++S  W  LA  ++  +    + +    G  D  K+    I     + KH    A   
Sbjct: 64  SYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMANKHRARFANYI 123

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              + +LF+ AV  ++   NP   +E+      G                +     RLAF
Sbjct: 124 PHMLSILFEHAVDLDWQRDNPAKGIEKI---KTGEGHKPWPKPAVATFRKNVRGLERLAF 180

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           E  L +G R SD  R     ++++   +   KTG  + +   D    +L  TP     + 
Sbjct: 181 ELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILDETPRKSLHWI 240

Query: 257 INNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
           +++D  +          F     + G+     HG+R  +A   A+AG T H++ A  G K
Sbjct: 241 LSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTDHQIAAITGHK 300

Query: 315 TVDQAETYTKGADRIRLGIKN 335
           ++   + Y+K A++ RL  + 
Sbjct: 301 SLSMIQKYSKSANQKRLAQQA 321


>gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 271

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 10/263 (3%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L   +  +        L+  +   + +  +  I+  GD D   + T  +         +P
Sbjct: 3   LSEAVELFLNFKE-KELSPRTVKEYRNDLNLFIKTVGDKDVSAVKTADLMLFRGRMGCSP 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSF-WSE 188
           S   + ++++   F + V  E +  NP     R K+  +      T E++++        
Sbjct: 62  SLINRRISALNTFFNFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEEVEKVLEAARKR 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLL 245
           G +  L F+ +LY GLR S+      + +             K G    + L   F + L
Sbjct: 122 GERDYLMFKTILYCGLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSRSFAREL 181

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                  E   +      ++       F     + GV    H +R   AT+  D G    
Sbjct: 182 ISYAERVEGEKLF----PLSYQGAKYIFNRVRDETGVPIHPHKLRHTFATVLVDRGVDIR 237

Query: 306 ELMATYGWKTVDQAETYTKGADR 328
            + A  G  + + +  Y K  D 
Sbjct: 238 VIQAFLGHASPNTSARYAKVRDE 260


>gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 346

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 119/345 (34%), Positives = 178/345 (51%), Gaps = 7/345 (2%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPR 65
            PP + +E TRHGK ++Y R G G+RIR+        F   Y  A+       +      
Sbjct: 5   RPPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQAGP-- 62

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             P TL WLI+ Y  S  W  L+  +R    +    + + +G+   R I  K I +G + 
Sbjct: 63  -NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRDR 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFK 183
           R+ TPS+A  FL +MR LF WAV  E++  NP + V+   RK    G   WT+E+++QF+
Sbjct: 122 RRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQFE 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           + W  G+Q RLA + LLY+GLR SD    G QH++ + F+I+T+KTG ++   +      
Sbjct: 182 ARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLAA 241

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            +A  P G   F + +         F+ WF+    KAGV   +HG+RK +A  +A+AGA+
Sbjct: 242 SIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGAS 301

Query: 304 AHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             EL A +GW+    ++ TYT+ AD  RL      R       DD
Sbjct: 302 EMELNALFGWRPGSRESATYTRAADVERLARGALMRNPRAWKGDD 346


>gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 362

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 14/346 (4%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKRE 59
           M  +    P+V     + G+I + F    G R  LP P   + F+ AY +AL  +   R 
Sbjct: 1   MKRARGKYPYVRPNTVK-GRIYWKFE-KDGFRCNLPGPWGFAEFVAAYEAALNHAKAPR- 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              +      TL WLI +Y  S  + +L+ + + +     D +  ++G + + ++  +H+
Sbjct: 58  ---ASTAIEGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHV 114

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
              +  +   P++A     +M +L  +A ++  Y   NP    E+ K   +G   W +E+
Sbjct: 115 EKLMTKKA-GPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEE 173

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +++F      G++ RL     L +G+   D  R G QH++    + +  KT     + + 
Sbjct: 174 VERFLDRHGPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPIL 233

Query: 239 DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                 L       +         +             WF+ +  +A V  + HG+RK  
Sbjct: 234 PELAVELEAALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAG 293

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AT  ADAGAT  E+ +    K    A  Y K A+R RL      ++
Sbjct: 294 ATRLADAGATEWEIASYLAHKDTKTAAIYVKKANRARLADSGFAKL 339


>gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
 gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC
           33313]
          Length = 302

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 24/283 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR 126
            + ++ +Y         L+ N++ S++    Q  +      Y  +T      I + +   
Sbjct: 8   FEDVLVDYLHYLTVERGLSANTKHSYQQDLVQFFQYLIAEKYDTLTVVDRFTIMAFLGQL 67

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    S     + ++++R  F++      +  NP   V+ PK+        T E+++   
Sbjct: 68  EQKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLEEVEALL 127

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
                    G + R   E +  +GLR S+     + +L  ++       K      V + 
Sbjct: 128 QVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERIVPIG 187

Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           D  +K L                    F+N+   ++         K    +AG+  + S 
Sbjct: 188 DVAVKWLENYLNNSRPLLGKQQDPHVIFLNDHGHQLTRQGVWKLIKQWVKQAGITKDVSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   + GA    +    G   +   + YT  +++ 
Sbjct: 248 HTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290


>gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
 gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4]
          Length = 295

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 98/282 (34%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127
             LI++Y  +      L+ N+ +S+      +     +     I       I + +++ K
Sbjct: 2   DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 61

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T  +       ++S+R  FK+ +  + +  NP  +++ PKR        T E++++   
Sbjct: 62  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLK 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +       K      + + D
Sbjct: 122 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 181

Query: 240 GFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L                    F+N     +         KA+  KAG+ K  + H
Sbjct: 182 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 283


>gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
 gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284]
          Length = 296

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127
             LI++Y  +      L+ N+ +S+      +     +     I       I + +++ K
Sbjct: 3   DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 62

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T  +       ++S+R  FK+ +  + +  NP ++++ PKR        T E++++   
Sbjct: 63  QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLK 122

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +       K      + + D
Sbjct: 123 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 182

Query: 240 GFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L                    F+N     +         KA+  KAG+ K  + H
Sbjct: 183 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 243 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 284


>gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 335

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 126/337 (37%), Gaps = 13/337 (3%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +VT+ +  H    +Y+R+      RLP  P    F   Y           +        
Sbjct: 2   KYVTETKPGH----FYYRRNGRYWGRLPGLPGSIEFATEYARLNASFADVGKTP----AV 53

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P T   ++  Y  S  +  +L   ++ ++    D +  + G F    I  KH+    +  
Sbjct: 54  PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P  A   + ++RV+F W + +  +  NP        +K +             K   
Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFRA 173

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  LAFE  L +G R  D  R     + + +  +  +KTG  + + +      +LA
Sbjct: 174 EGQPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLAGVLA 233

Query: 247 MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
             P    T  +N+       A   +  F A+ T+ G++    HG+RK +A   AD G + 
Sbjct: 234 RAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADVGCST 293

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            ++ A  G       E YT+GAD+ RL      ++  
Sbjct: 294 KQIAAVTGQSD-QMVEHYTRGADQKRLAKAAVVKLER 329


>gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
 gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96]
          Length = 294

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
           LI ++  +      L+ N+  ++ S      +   D    ++    +   +E R      
Sbjct: 6   LIDQFLDAVWVEQGLSENTLSAYGSDLRIFAKWLKDKPILEVDGGQLSDFLEGRHKEGIG 65

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
             S  + L+S+R  + + +R+  + I+P   +E P       +  ++ D++         
Sbjct: 66  NRSTARILSSLRRFYGYYIRENSIKIDPTALIESPHIGQPLPKSLSELDVELLLDAPEVT 125

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
              G + R   E L  +GLR S+      + +      ++          V + +  M  
Sbjct: 126 NALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERLVPVGEVAMGW 185

Query: 245 LAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L                 +  F+ N    M    F    K  A KA +NK  S H +R  
Sbjct: 186 LEEYMVQARKTILGERQCDYLFVTNRADSMTRQAFWHIIKRHAKKAQINKELSPHTLRHA 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT   + GA    +    G   +   + YT  A R RL
Sbjct: 246 FATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIA-RERL 283


>gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 295

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 100/281 (35%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH 128
            LI++Y  S      L+ N+ IS+      +          D +KI    I   ++  K 
Sbjct: 3   DLINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKK 62

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T  +       ++S+R  FK+ +  + + ++P ++++ PKR        T  ++++    
Sbjct: 63  TGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQV 122

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
            +     G + R   E +  +GLR S+     +  L   +       K      + + D 
Sbjct: 123 PNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPIGDV 182

Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +K L                    F+N     +         KA+  KAG+ K  + H 
Sbjct: 183 AIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 243 LRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR 283


>gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 14/335 (4%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
              PP + +E TRHG+ ++Y R G G+RIR+  P     F   Y  A+ G+ P      +
Sbjct: 3   RSRPPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTPPPAGKGPA 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
               P TL WL+++Y +SA W   +  +R    + +  I + +G    + I  + I +G 
Sbjct: 63  ----PGTLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGR 118

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQ 181
           + R+  P +A  F+ +MR LF WAV + YVA +P   V+    +    G   WT+E++ +
Sbjct: 119 DRRRDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELAR 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F++ W  G++ RLAF+ LLY+GLR  D+ R G QH++ + FSI+T      +T  +    
Sbjct: 179 FEARWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQL 232

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
              +A T  G   F +  D        F  WF+     A V  SAHG+RK  A  +A+AG
Sbjct: 233 AASIAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAG 292

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
           AT  +L A +GW+    ++ TYT+ AD  RL  + 
Sbjct: 293 ATEMQLNALFGWRPGSRESATYTRTADNARLAREA 327


>gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 383

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 148/354 (41%), Gaps = 19/354 (5%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLP-------YPHESTFIPAYMSALTGS 54
             RL  +   +    G   YY R  +   ++IR+              F+ AY+ AL   
Sbjct: 3   KTRL-RYCVYDPDTAGNPRYYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDALASL 61

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRK 113
             +        ++  T  WL  +Y +SA +      ++       ++     +GD  Y  
Sbjct: 62  DKETSSAPKASREK-TFSWLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAA 120

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                +    + R  TP +A + +  +R LFKWA+++   ++NP + VE+          
Sbjct: 121 FRQADVERSRDKRAGTPGAADKLVKYLRALFKWAIKKRLASVNPAIGVEKINEGEGW-HA 179

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQK 228
           WT +++  ++   S G++ RLA E +L  G R SD+CR G QH  N       +  + +K
Sbjct: 180 WTPDEVATYRKHHSIGTKARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKK 239

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           +   I   +       +  T  G  T+ IN+  +           +     A +   S+H
Sbjct: 240 SRKTIECPITLELRAAIDATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSH 299

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           G+RK +A I A+ GATA EL A +GW  ++ AETY + A    +      R+  
Sbjct: 300 GLRKAAAVILAENGATAPELCAIFGWSKLETAETYIRQAQSRIMVSNAFSRLDE 353


>gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
 gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644]
          Length = 300

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 33/302 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
           L+ ++++Y         L+ N+  S+     Q I    +    D   +  + I   ++  
Sbjct: 6   LQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYLSEHKITDLNDVDKQVIVDYLDYL 65

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +     +S I+ +TS+R  F+   + E +  +P +S+E PK +       + E+++   
Sbjct: 66  MNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLL 125

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
           +      + G + R   E +  +GLR S+     ++ L  +        K      V + 
Sbjct: 126 NAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKGRKERIVPIG 185

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SA 286
           D  +  +             N +                      K +  KAG++K  + 
Sbjct: 186 DEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNEVKKAGISKNVTP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R   AT   + GA    +    G   +   + YT  +          +R+S + D  
Sbjct: 246 HTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISK---------KRLSKIYDES 296

Query: 347 DP 348
            P
Sbjct: 297 HP 298


>gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 295

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 108/285 (37%), Gaps = 26/285 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124
             T+   I  Y  +     L+ N+  S+       +      G   ++++   HI   + 
Sbjct: 2   EKTVHEFI--YYLNVE-RGLSENTLNSYLRDLKNFLEFLNQQGVTKWQEVKRTHIMKYLI 58

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             K      ++  + + S+R  F++ +++  ++ NP   +E PK++ +     + +++ +
Sbjct: 59  FMKEKGKASATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDK 118

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             +       +G + +   E L  +G+R S+     V+H+ +N   I  +        V 
Sbjct: 119 LLNQPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVP 178

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           L    +K ++                   F+N+  ++++   F    K  A K G+ +  
Sbjct: 179 LGKMAIKSVSDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKI 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQR 283


>gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11]
 gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11]
          Length = 332

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 127/333 (38%), Gaps = 15/333 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +T  G+   YFR   GR +RLP  P+   +   Y   + G        + P  +  T + 
Sbjct: 10  KTIKGRTYQYFR-KDGRYVRLPDDPNSEEYDREYWRLMRG--------DGPLSQRYTFEK 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI  Y++S  W SLA  +R  +    + I  K G  D  K+    I     + +H    A
Sbjct: 61  LILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRARFA 120

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 + +LF+ ++  ++   NP   + + K         T       K          
Sbjct: 121 NYIPHMLSILFEHSIDLDWQRDNPAKGISKIKTGEGHRPWPTSAITAYRKHA---NGLAL 177

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L FE  L +G R SD  R   +H+++    +   KT   + +        ++  +     
Sbjct: 178 LIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFTARLAAVIDASQKTSA 237

Query: 254 TFF-INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
            F   +    ++N  Q      A    A +   S HG+R  +A   A+AG T  ++ A  
Sbjct: 238 KFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQQIAAIT 297

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           G K++   + Y+KGA + RL  +         +
Sbjct: 298 GHKSLSMVQKYSKGASQKRLAQEAHNLRERNKN 330


>gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
 gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium
           TW-7]
          Length = 308

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 20/284 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127
              +  +  S +    ++ N+  ++ S  D+  +     +   +T   I    +      
Sbjct: 19  SDYLETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKGENLMTVTGHDIESYLAHRVDLG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + +++++  +++ VR++ +   P L++ +PK      +  ++ +++   +  +
Sbjct: 79  LKPRSTARSISALKRFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEVEALLNAPN 138

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                G + +   E L  +GLR S+     ++ +           K      V L +  M
Sbjct: 139 TEEPMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAM 198

Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
             L          M     +  F +     M    F    K  A  A V    S H +R 
Sbjct: 199 HWLELFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             AT   + GA    +    G   +   + YT  A+     +  
Sbjct: 259 AFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302


>gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 132/334 (39%), Gaps = 16/334 (4%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LP +V  +  R    +Y+ R G  +R+    P  + F   Y   + G          
Sbjct: 2   KRSLPAYVYAKGKRG--YLYFCRWGKTQRMYAA-PGTAEFAAEYALLMRG---------R 49

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     T+K LI +Y +S  W +LA N++ S+  +F  +   +G  D   + T HI    
Sbjct: 50  PPAPKRTIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMR 109

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++ + TP+ A + + ++  L    VR  ++  NP   VE+ K       PW    ++ F+
Sbjct: 110 DALRDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFR 169

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   P L FE LL +G R  D  +     +++    ++ QKTG  I V   D    
Sbjct: 170 --GEAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADA-G 301
           +L  TP   +T     + +  + +           K   +    H +R  +A   A   G
Sbjct: 228 ILEQTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPG 287

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +   +MA  G  +   A  Y++ AD      + 
Sbjct: 288 MSIEHVMAITGHSSEQMARHYSRKADMRAKAREA 321


>gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
 gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp.
           SM9913]
          Length = 308

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 20/284 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127
              +  +  S +    ++ N+  ++ S  D+  +         +T+  +    +      
Sbjct: 19  SDFLETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKGESLMTVTSLDVESYLAHRVDLG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + +++++  +++ VR++ ++ +P +++ +PK      +  ++ +++   S  +
Sbjct: 79  LKPRSTARSISALKRFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEVEALLSAPN 138

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                G + +   E L  +GLR ++     ++ +           K      V L +  M
Sbjct: 139 IEEPMGLRDKAMLELLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAM 198

Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
             L          M     +  F +     M    F    K  A  A V    S H +R 
Sbjct: 199 YWLEQFLKLGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             AT   + GA    +    G   +   + YT  A+     +  
Sbjct: 259 AFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302


>gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 359

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 3/339 (0%)

Query: 4   SLR-LPPFVTKERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             R LP +V+  R RHGK  Y FR+    + +    P    F   Y + LT S   +   
Sbjct: 2   KRRWLPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQP 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + + KP T   LI  Y +S  +   +  +++ +    ++   K G      + T+H+ +
Sbjct: 62  GADKIKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAA 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +       +SA      +  L  +A RQ  +  NP L+ +  +    G   WT+ ++  
Sbjct: 122 MMAEMLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIAL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           +++    G+  RL F+ LL++G R  D    G   +Q+    I  +KT   +++ +    
Sbjct: 182 YEAHHPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPAL 241

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            + +  T  G++TF +    +      F   F+     AG+   SAHG+RK +A   A+A
Sbjct: 242 AQSILATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEA 301

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             +  ++ A  G  T  +   YT   D+  +    +  +
Sbjct: 302 RCSNQQIKAWTGHTTDSEIARYTAAVDQQLMSDAAAEML 340


>gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
 gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50]
          Length = 292

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 99/282 (35%), Gaps = 22/282 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESR 126
            I +Y          + N+  S+     +        G  D R I   +I + +   E  
Sbjct: 4   YIEKYVDYLKNIKKSSENTVASYRRDLVKFSDFYRENGTEDIRSINETNINTYILYLEKN 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + + S++  F +  R++ +  +P ++++ PK + +     T E++ +     
Sbjct: 64  GKSMATVSRSIASIKSFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEVNRLLDQP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            + S    + R   E L  +G+R S+     +  +   +  I+         + + D   
Sbjct: 124 GDQSPKEIRDRAMLELLYATGIRVSELVTLKITDVNLKMGYIECHDLRKSRIIPIEDSAQ 183

Query: 243 KLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           + L                    N     M    F    K  A KAG++K  + H +R  
Sbjct: 184 RALDNYISNVRGDMCKNSEYLFSNCKGTPMTRQGFWKIIKVYADKAGIDKDITPHMIRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            A+   + GA    +    G   +   + Y   + + RL  +
Sbjct: 244 FASHLVNNGADLKAVQEMLGHADISTTQIYL-NSKQSRLKEE 284


>gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
 gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633]
          Length = 310

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 8/303 (2%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           + AY  AL  + P    +     +  T+  LI +Y  S+ + +L  +++ ++ S  +   
Sbjct: 1   MAAYAQALANT-PLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G    R + T+H+   +   +  P++A + L  ++ +F  AVRQE    NP   ++ 
Sbjct: 60  NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K  ++G   WT+ +++ FK+ +  GS+PRLA   LL +G R SD  R G Q + +    
Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179

Query: 224 IK-----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            +      QKT T + + +       LA        F      +  +   F  WF  +A 
Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARNGKHMVFLTTEYGKAFSVKGFQQWFAERAK 239

Query: 279 KA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            A      +AHG+RK  A   A+AGAT H + +  G KT+ +   YT G D+ +L     
Sbjct: 240 AATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLASAAQ 299

Query: 337 RRI 339
             +
Sbjct: 300 ALL 302


>gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 395

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 100/351 (28%), Gaps = 20/351 (5%)

Query: 14  ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
                G   Y  +   G   RRI L      T   A + A                 +  
Sbjct: 32  RIMPSGAKTYQAQYRKGGRTRRISLGRHGTLTVEQARLLAKEVLGDVAKGENPAEDIAQH 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           +K  T+  L   + ++        +++  +    D  I    G F    +  K +     
Sbjct: 92  RKAPTVAALCERFFQAHVMERCKPSTQGEYRRAIDMFINPALGSFKLVDLERKDVAELHH 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +  P  A + L  +  +F  A                PK +      +  +   Q   
Sbjct: 152 KFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREHKRERYLSQVELQRLG 211

Query: 185 FWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                             AF  L+ +G R  +        + +    +   KTG      
Sbjct: 212 NVLADAELNGTETPHIIAAFRLLILTGCRLGEIQTLQWGFITDQGMELPDTKTGARRIPL 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                  L  +  +    + I       +AT F   ++    +AG+     H +R   A+
Sbjct: 272 PSAARAVLSTLARVDGNPYVIVGKVAGKHATDFQHPWRRIRERAGLTGVRIHDLRHTYAS 331

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344
            +  +G     +    G   +     Y   AD    +   +N+ R++++V 
Sbjct: 332 NAVSSGMPIQMVGRLLGHTQIQTTMRYAHLADDPVKKAAEENAERLNALVG 382


>gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 308

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 106/302 (35%), Gaps = 24/302 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           +    E   +P+     L+  +   Y +      ++ N+  ++ S  D+  +     +  
Sbjct: 5   ADDFSEPSTAPKSNNDYLETFLDCLYLE----QGVSENTLSAYRSDLDKFCQFLKGKNLM 60

Query: 113 KITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +T   +    +        P S  + +++++  +++ VR++ ++ +P L++ +PK    
Sbjct: 61  TVTGLDVESYLAHRVDLGLKPRSTARSISALKRFYQYFVREKLISDSPMLNIAQPKAGQS 120

Query: 170 GIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
             +  ++ +++   S  +     G + +   E L  +GLR S+     ++ +        
Sbjct: 121 LPKTLSEAEVEALLSAPNTDEPMGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVF 180

Query: 225 KTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275
              K      V L +  M  L          M     +  F +     M    F    K 
Sbjct: 181 VKGKGNKERLVPLGEEAMYWLEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKH 240

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A  A +    S H +R   AT   + GA    +    G   +   + YT  A+     +
Sbjct: 241 YAILASIESSLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSV 300

Query: 334 KN 335
             
Sbjct: 301 HA 302


>gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
 gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2]
          Length = 305

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 116/299 (38%), Gaps = 26/299 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR- 126
             L+ E+  S      L+ N+  S+    ++      +   + +   T   ++  +    
Sbjct: 4   AELLDEFADSLWLEDGLSRNTLDSYRRDLNKFSDWLRNQRGQDLLQTTHADLQGYIADLF 63

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K  PSSA + L+S++ LF++ +RQ  +AI+P L ++ PK      +  T++D++Q  
Sbjct: 64  IVQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLL 123

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
           +        G + R  FE L  +GLR S+    G+  L  ++  ++          V L 
Sbjct: 124 AAPDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLG 183

Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           +  +  L                 +  F+      M    F    K  A + G++K  S 
Sbjct: 184 EVALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPLSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R   AT   + GA    +    G   +   + YT  A R RL   +++       +
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERLKQLHAKHHPRGSPA 301


>gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23]
 gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071]
 gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99]
          Length = 297

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +       G  D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
              +    G + +   E L  +GLR ++     +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
 gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154]
          Length = 298

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           +   I++Y         L+ N+  S++    Q        + +   +    I + +   +
Sbjct: 5   IDNAIADYLHYIRIERGLSDNTIKSYQQDLKQFSVYMTAENLNLNAVDHVVILTWLNQLR 64

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +S I+ +TS+R  F + +++  +  NP   V+ PK+        +  ++     
Sbjct: 65  ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEIDALLQ 124

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
             +E    G + R   E +  +GLR S+     +  L   +       K      + + +
Sbjct: 125 VPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287
              + L           + +               +        K   + AG++K  S H
Sbjct: 185 IATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  +          +R+S V D+  
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDAFH 295

Query: 348 P 348
           P
Sbjct: 296 P 296


>gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040]
          Length = 333

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 11/339 (3%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M   L    +VT +  + G++ YYFR+G   +     P    F  AY +  +G       
Sbjct: 1   MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDDAYWAIRSG------- 51

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             + +K  TT + LI  Y ++  +       +  +    + I  K+G  D+ K+  + + 
Sbjct: 52  -RAKKKAKTTFEALIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVI 110

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  ++   T   A   +  + +L + A+  E++  NP   V++         P  K    
Sbjct: 111 AARDAYADTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLTGGEYEPWPDAKLQAF 170

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +      A+   + +G R  D       H      ++  +KT   + V  P  
Sbjct: 171 EAFCKKHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTF 230

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299
             + L   P         +  + +          A   K G V    HG R  +A   A+
Sbjct: 231 LKRYLDGLPRRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAE 290

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AGA+  E+ A  G KT++  + Y   A++ RL      R
Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRSQANQKRLSKSAQAR 329


>gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 392

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 20/351 (5%)

Query: 14  ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
                G   Y  +   G   RR+ +    + T   A   A                 S  
Sbjct: 32  RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQH 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           +K  T+  L   + ++        +++  +    D  I    G F    +  + I     
Sbjct: 92  RKAPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHH 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
             +  P  A + L  +  +F  A                PK +      +  +   Q   
Sbjct: 152 KFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRERFLSQPELQRLG 211

Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                     SE      AF  L+ +G R  +       ++  N   +   KTG      
Sbjct: 212 QVLSEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWDYITANGMELPDSKTGARRIPL 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                  L  +       + I        AT     ++    +AG+     H +R   A+
Sbjct: 272 PQPARDVLARLPRSPGNPYVIEGKLPGQYATDLQHPWRRIRDRAGLAGVRIHDLRHTYAS 331

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344
            +  AG     +    G   +     Y   AD    +   +N+ R+ S+V 
Sbjct: 332 NAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSLVG 382


>gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 298

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           ++  IS+Y         L+ N+  S+    +Q             ++    + S +   +
Sbjct: 5   IEDAISDYIHYIRIERGLSENTITSYRQDLNQFGMYLSQEHLLLGEVDHIVVLSWLNRLR 64

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               + SS I+ +TS+R  F +  ++  +  NP   V+ PK+        + E++     
Sbjct: 65  TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E +  +GLR S+     +  L   +       K      + + +
Sbjct: 125 VPVPSTPLGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +  L                    F+N+   ++         K    +AG+  + S H
Sbjct: 185 VAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  +          +R+S V D   
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 295

Query: 348 P 348
           P
Sbjct: 296 P 296


>gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
 gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633]
          Length = 297

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP- 130
           +  +  S     L+ N+ +S++    +  +   +    D++++    I   ++  K    
Sbjct: 5   LDYFVDSLAIQGLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDGY 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS  + ++ ++  FK+  +++ V  NP   ++ PK+     +  T +++ Q  +    
Sbjct: 65  ATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDT 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTI 232
               G + +   E L  +G+R S+     +  L             N    I   +  T 
Sbjct: 125 STVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAATN 184

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                      +L       E  F+N+         F    K    +AGV+K  S H +R
Sbjct: 185 WVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +AGA    +    G   +   + YT   +  
Sbjct: 245 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER 283


>gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
 gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603]
          Length = 295

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126
           +I EY K       L+VN+  ++    ++            I     + I+  +      
Sbjct: 4   IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLDLQKISNIDFVDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++    +  
Sbjct: 64  GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIDLLNAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++          V L D  
Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLSDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4]
 gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4]
          Length = 320

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 12/316 (3%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +  Y   L G  P+R+  + P   P +   L   Y  S  + SL V++R       D+I 
Sbjct: 1   MNKYYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEIS 59

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              G      +  +H+R+    ++ TP++A   L +++ LFKWA      + +P  +V+ 
Sbjct: 60  EAHGTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDF 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K   +G  PW+  +++ +++    G+  RLA E LLY+  R  D  R G  +L    F 
Sbjct: 120 LKYAKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFR 179

Query: 224 IKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               K        I + +     + +A        F + +  +      F   FK    +
Sbjct: 180 FVQGKNEDRAPVLIDIPVHPDLAEAIAAAQPSGAVFILTHYGRPFTPNGFGNRFKKWCIQ 239

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AG+   SAHG RK +A   A  GATAH++M+  G +++ + E YT+ A R ++       
Sbjct: 240 AGLPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMAL 299

Query: 339 I------SSVVDSDDP 348
           +       S + ++ P
Sbjct: 300 LPDRRSAGSTIPANRP 315


>gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121]
          Length = 295

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126
           +I EY K       L+VN+  ++    ++            I     + I+  +      
Sbjct: 4   IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLTLQKISNIDFVDRQTIQECLGYLIDQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++ +  +  
Sbjct: 64  GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIELLNAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++          V L D  
Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
 gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC
           33323]
 gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4]
 gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22]
          Length = 302

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 105/282 (37%), Gaps = 25/282 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120
           +  T+K  + +Y + S     L+ N+ IS+ +  ++ +    D +        +      
Sbjct: 3   QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  + +    +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ 
Sbjct: 63  ATQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVD 122

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +  +     +    + R   E L  +G+R S+        +  ++  I+   K      V
Sbjct: 123 KLLAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLV 182

Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            + +  +  L                   +  F+NN   ++         K      G+ 
Sbjct: 183 PITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGIT 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  + H +R   AT   + GA    +    G   +   + YT
Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284


>gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 296

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131
           I +Y         L+ N+  S+     +              I    I   +E+ +    
Sbjct: 6   IEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKHAKSIADIDQFVILDYLETLQRQHK 65

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKS 184
           +     + ++++R  F++ V+   +  +P L V+ PK+        T   +        +
Sbjct: 66  ARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQVNQLLSMPDT 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L   +       K      + + D  + 
Sbjct: 126 HKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKERIIPISDVAID 185

Query: 244 LLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            L                     F+N    ++         K    +AG+ +  + H +R
Sbjct: 186 WLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYVNQAGIKRHVTPHTLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  +
Sbjct: 246 HSFATHLLENGADLRIVQELLGHSDISTTQIYTHVS 281


>gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 279

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 90/270 (33%), Gaps = 16/270 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  LI  +  S      + N+  S+ +    +     D         +    +  + + P
Sbjct: 3   IDRLIDRFLFSLKVRGFSDNTISSYANDLSLVSNFFKDKMLDDNGVGNFVLWLSQKNYKP 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L+S R   K+  ++  +      S++  K   +  R    E +++       G 
Sbjct: 63  SSFNRKLSSFRSFLKFLTKEG-LCNIDVSSIKNKKYSRKVPRYIPFETIKKVMEDKKTG- 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
              L  E +  SGLR S+     V  +  +   I+ +        V + +G +K L    
Sbjct: 121 ---LFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVRGKGSKERLVPVGNGTLKRLKSYI 177

Query: 250 IGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                   N+            +  +        K    K G++   H +R   AT   +
Sbjct: 178 ENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVHPHMLRHMFATHMIE 237

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G +++   + YT   D+ 
Sbjct: 238 NGANIRAVQEMLGHRSITTTQIYTDITDKA 267


>gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
 gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03]
          Length = 302

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 25/282 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120
           +  T+K  + +Y + S     L+ N+ IS+ +  ++ +    D +        +      
Sbjct: 3   QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  + +    +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ 
Sbjct: 63  AAQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVD 122

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +  +     +    + R   E L  +G+R S+        + +++  I+   K      V
Sbjct: 123 KLLAAPDTNTPLGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLV 182

Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            + +  +  L                   +  F+NN   ++         K      G+ 
Sbjct: 183 PITEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLVGIT 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  + H +R   AT   + GA    +    G   +   + YT
Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284


>gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
 gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601]
          Length = 296

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126
            + ++         LA N+  +++             G  D   IT   + + +      
Sbjct: 4   YVEDFLHYLVVEKGLAANTIQAYKRDLRYFDSFLEIEGITDPNSITRGTVVAFIAFARDA 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P +  ++L S+R  F + +  + +  +P + +E PK+     +    E++++  +  
Sbjct: 64  DKSPRTIARYLASLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEVEKLLAAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G + +   E L  +GLR S+     +  L  +  F     K      + L    
Sbjct: 124 DPNSILGLRDQAMLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKERIIPLGHTA 183

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             +L                  +  F+N+    +    F    K  A KAG++K  + H 
Sbjct: 184 TAVLTKYLEEARPKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA    +    G   +   + YT  
Sbjct: 244 LRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 280


>gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213]
 gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 297

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+ S  ++      +         I  +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPKAFLSLDHIDLQGFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  +S+ + L+ +R  F++   + Y   +P L++  PKR     +  +++ +      
Sbjct: 64  QGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLLDA 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233
            +       + +   E L  +GLR ++     + ++      ++                
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKERLVPLGEE 183

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + + + +     +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 184 ANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDADKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT+ A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA-KARL 286


>gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
 gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1]
          Length = 302

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 25/275 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
                Y  S     ++ N+  S+ +  + ++      D   ++I    +R  V       
Sbjct: 8   DYFENYLISE--RQVSSNTVKSYLNDLNDLVSFIKDEDKSLKEIDYFALRMFVAYLYDKG 65

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + + ++R  FK+ +++  +  NP   ++ PK+  +    +  + +        
Sbjct: 66  FSKSSIERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFDIDTIFSLLELPD 125

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +    G +  L  EFL  +G+R S+     +  +      ++    G  + V     ++ 
Sbjct: 126 KETPSGIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIFGKGKKMRVIPLSDYIM 185

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            L                +  +  FIN     +              KAG+    S H  
Sbjct: 186 DLIKKYLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDKYLKKAGLPLNYSPHSF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 246 RHTFATHLLENGADLRTIQKLLGHSSLATTQKYTH 280


>gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 100/351 (28%), Gaps = 20/351 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPR----- 65
              R G   Y  +   G R R   +      T   A   A           N        
Sbjct: 32  RVMRSGTRTYQVQYRKGGRTRRASIGRHGTVTVQQARQRAKELLGDVASGGNPVEEISQH 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           ++ +T+  L   + ++        +++  +    D  I    G F    +  + I     
Sbjct: 92  RRASTVAALCERFFEAHVMERCKPSTQREYRRSIDFFINPAIGTFKVVDVERRDIAELHH 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----- 179
             +  P  A + L  +  +F  A                PK +      +  +       
Sbjct: 152 KLRDKPYQANRTLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRERKRERYLSQAELRRLG 211

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +   SE      AF+ L+ +G R  +       +L  N   +   KTG      
Sbjct: 212 EVLADCERSGSESPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGARRIPL 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                  L A+       + I    +  + T     ++     AG+ +   H +R   A+
Sbjct: 272 PSAARAVLDALPHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYAS 331

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344
            +  +G     +    G   +     Y   AD    +   +N+  +S  + 
Sbjct: 332 NAVSSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKAAEENAAALSEGLG 382


>gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 296

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ +S+ +  ++ +    D +        +      +  + +  
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDSFLATQKDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +       
Sbjct: 65  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
            +    + R   E L  +G+R S+        + + +  I+   K      V + +  + 
Sbjct: 125 NTSLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L                   +  F+NN   ++         K      G+ K  + H +
Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278


>gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
 gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14]
 gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87]
          Length = 295

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126
           +I EY         L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLNFIQIEKGLSSNTIGAYRRDLKKYEEYLEERKISHIDFVDRQVIQECLGHLIDL 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R+ Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++          V L D  
Sbjct: 124 DLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365]
 gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064]
 gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD
 gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858]
 gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503]
 gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262]
 gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194]
 gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017]
 gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816]
 gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220]
          Length = 297

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +       G  D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
              +    G + +   E L  +GLR ++     +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62]
 gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62]
          Length = 336

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 124/337 (36%), Gaps = 14/337 (4%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MT    LP  V +   R+G  +Y+ R+G   +  L       F   Y S L+G  P    
Sbjct: 1   MT-KRELPKHVYR--QRNG--LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERPV--- 52

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +    + K LI  Y +S+ +  L   + + ++ Y        GD +   +  K + 
Sbjct: 53  ---SKITARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVI 109

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +S    P  A   L  +RVL +  V   +  +NP   V   K   +   PW +E + 
Sbjct: 110 RLRDSNADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLD 169

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q++     G++ RLA E  + +G R  D        +Q+  F+++  KTG  + + +   
Sbjct: 170 QYRIACPLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPE 229

Query: 241 FMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISA 298
               L                  + +    +   K    +   ++   H  R  +A    
Sbjct: 230 LQAALDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELV 289

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +AG     + A  G ++    + YTK   +    I+ 
Sbjct: 290 EAGCGDDLVAAVTG-QSAAMVQHYTKQVRQRVRAIQA 325


>gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
 gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552]
          Length = 302

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           LK  I EY++       L+ N+  ++    +Q                I  +H+R  ++ 
Sbjct: 3   LKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKINDIAKEHVRLYIKE 62

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
              K + +S  + L S+R+ F +A ++  +  N     + PK   +     +KE+MQ+  
Sbjct: 63  LSKKISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELL 122

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
              +      S+ R  FE +  +GLR S+     +  L  N+  +K          V L 
Sbjct: 123 DSIEINDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLS 182

Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +    +L          F          NN   K++  +  I  K    +  +NK  S H
Sbjct: 183 NMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 243 TIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK 284


>gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 298

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD-YRKITTKHIRSGVESRK 127
           +   I +Y         L+ N+  S+     Q      G+     ++    I S +   +
Sbjct: 5   IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNQLR 64

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +   
Sbjct: 65  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 124

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
              E +    + R   E +  +GLR S+     +  L   +       K      + + +
Sbjct: 125 APIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287
             +  L           + + +             +        K   T AG+  + S H
Sbjct: 185 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  +          +R+S V D   
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 295

Query: 348 P 348
           P
Sbjct: 296 P 296


>gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
 gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811]
          Length = 298

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           +   I++Y         L+ N+  S+     Q              I    I + + + +
Sbjct: 5   IDSAIADYLHYIRIERGLSDNTIKSYHQDLQQFALYVTTEKLQLNDIDHIAILTWLNNLR 64

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S     + +TS+R  F + +++  +  NP   V  PK+        T  ++    +
Sbjct: 65  EQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDALLA 124

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
             +E    G + R   E L  +GLR S+     +  L   +       K      + + +
Sbjct: 125 VPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287
                L           +  ++             +        K     AG+  + S H
Sbjct: 185 VAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDVSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  +          +R+S V D+  
Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDNFH 295

Query: 348 P 348
           P
Sbjct: 296 P 296


>gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 297

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD-YRKITTKHIRSGVESRK 127
           +   I +Y         L+ N+  S+     Q      G+     ++    I S +   +
Sbjct: 4   IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNKLR 63

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + SS I+ +T++R  F + VR++ VA NP   V  PK+        + E++ +   
Sbjct: 64  DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
              E +    + R   E +  +GLR S+     +  L   +       K      + + +
Sbjct: 124 APIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 183

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAH 287
             +  L           + + +             +        K   T AG+  + S H
Sbjct: 184 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  +          +R+S V D   
Sbjct: 244 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYDEYH 294

Query: 348 P 348
           P
Sbjct: 295 P 295


>gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL
           J2-003]
          Length = 290

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +          D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
              +    G + +   E L  +GLR ++     +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
 gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD
 gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435]
          Length = 295

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY K       L+ N+  ++     +      +     I     + I+  + S    
Sbjct: 4   IIEEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQEQKIAHIDFIDRQTIQECLGSLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +SA    +F++++R   ++A+R++Y A +P + +E PK + +       E++ Q     
Sbjct: 64  GASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G + R   E L  +G+R ++  +  +  +     F     K      + L D  
Sbjct: 124 DLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKERIIPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L        +           F+N   + +         K    +A +NK+   H +
Sbjct: 184 IEYLDTYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYGLRANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQ 290


>gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
 gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841]
          Length = 317

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 101/297 (34%), Gaps = 25/297 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+  Y +       L+ N+  ++     +++    D   D+R ++   +   +       
Sbjct: 19  LLRRYYQYLKLERGLSENTLDAYTEDLRKLLDFFSDEELDFRAVSLDDLHQFMAELADVG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +P S  + L+ +R  +++   ++ +  +P   +E PK         T  ++        
Sbjct: 79  ISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGID 138

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               EG + R   E L   GLR S+ C   +  L      I+ +        V +    +
Sbjct: 139 LSQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAV 198

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNKS--AHGV 289
             L    + +    I    +             +      W K  A  AG+ K+   H  
Sbjct: 199 HELENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   AT   + GA    + A  G +++   E YT   DR RL  +        +  D
Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRLRREIMEHHPRNIRDD 314


>gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 392

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 102/356 (28%), Gaps = 21/356 (5%)

Query: 14  ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
                G   Y  +   G   RR+ +    + T   A   A                 S  
Sbjct: 32  RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVEEARKLAKEIMGQVAKGENPAEELSQH 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           +K  T+  L   + ++        +++  +    D  I    G F    +  + I     
Sbjct: 92  RKTPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPAIGSFKVVDVERRDIAELHH 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +  P  A + L  +  +F  A                PK +      +  ++  Q   
Sbjct: 152 RFRDKPYQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREIKRERYLNQNELQRLG 211

Query: 185 FW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                     +E      AF  L+ +G R  +       ++ +    +   KTG      
Sbjct: 212 HVLSEVEREGTETPFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMELPDTKTGARRIPL 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                  L  +       + I        AT     ++    +AG+     H +R   A+
Sbjct: 272 PQPARDVLTHLPRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGLAGVRIHDLRHTYAS 331

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVV-DSDDP 348
            +  +G     +    G   +     Y   AD    +   +N+ R+ S+V D   P
Sbjct: 332 NAVSSGMPIQMVGRLLGHSQIQTTMRYAHLADDPVRQAAEENAARLGSIVGDLRRP 387


>gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 312

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 7/304 (2%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKK 67
            +V +++ R+GK   Y+ +    R+ L  P     F+  Y +A        E    PR  
Sbjct: 10  KYVRRKKGRNGKEHLYYEEPGKERVALRGPIGSPAFLADYNAATEAE----ELPKRPRAA 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +L  L++ Y+ S  + +LA +++        ++    GD D R +    I    E   
Sbjct: 66  AYSLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVRMTEKLA 125

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P  A   L   + L K A+   +   NP   + RP+ KT+G   WT+ ++  ++  W 
Sbjct: 126 SGPEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAAYRKRWD 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G++ RLA E LL +G R  D  R   +H++     +  +KT   +   +    +K++A 
Sbjct: 186 VGTRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPELLKIIAA 245

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
           T  G +T  ++          F   F+A   +AG+    SAHG+RK  A   A+AGATAH
Sbjct: 246 TVTGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAEAGATAH 305

Query: 306 ELMA 309
           E+MA
Sbjct: 306 EIMA 309


>gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11]
 gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11]
          Length = 333

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 11/339 (3%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M   L    +VT +  + G++ YYFR+G   +     P    F  AY +  +G       
Sbjct: 1   MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDDAYWAIRSG------- 51

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             + +K  TT + LI  Y ++  +       R  +    + I  K+G  D+ K+  + + 
Sbjct: 52  -RAKKKTKTTFEALIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVI 110

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  ++   T   A   +  + +L + A+  E++  NP   V++ K       P  K    
Sbjct: 111 AARDAYSDTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLKGGEYQPWPAAKLRAF 170

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +     +       A+   + +G R  D       H      S+  +KT   + V  P+ 
Sbjct: 171 EAYCENNALEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEF 230

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
             K L   P         +  + +          A   + G      HG R  +A   A+
Sbjct: 231 LRKYLDGLPRKGRFIIAQSLHKGVAKRTIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAE 290

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AGA+  E+ A  G KT++  + Y   A++ RL      R
Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRSQANQKRLSQTAQAR 329


>gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
 gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759]
          Length = 292

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 97/272 (35%), Gaps = 21/272 (7%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG---VE 124
           +  I  Y +        + N+  S+     + +    D        IT  +I S    +E
Sbjct: 2   EQYIDRYVEYLRNVKKSSENTIASYRRDLMKFVAYFCDKHLDRLEDITETYITSYVLDME 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + ++  + + S++  + + +R+  V  +P  +++ PK   +     T  ++ +  S
Sbjct: 62  KNGMSMATVSRNIASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILTISEVNKLLS 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +  +    + +   E L  +G+R ++     +  +   +  I+      + TV + + 
Sbjct: 122 QPTNKTPKEIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHDGDRVRTVPVAEV 181

Query: 241 FMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + L+                   N     M+   F    K  A KAG++K  + H +R
Sbjct: 182 AQRALSRYITEVRDDMSGGSDYLFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A+   + GA    +    G   +   + Y
Sbjct: 242 HSFASHMLNNGADIKSVQEMLGHVDIATTQIY 273


>gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
 gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1]
          Length = 295

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 103/301 (34%), Gaps = 33/301 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
              + E+         LA N+  S+     Q      +     I       I + + + +
Sbjct: 2   DSYVDEFINYLAVERGLAQNTLESYGRDLRQFQLFLQNDKLDIIKDSNRNTILNYLNNLQ 61

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L +++  +++ VR+ Y+  +P  ++E PK + +  +  +  ++++   
Sbjct: 62  SKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLK 121

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
             +     G + +   E L  +G+R S+     +  +  ++  IK    G     V L  
Sbjct: 122 QPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKERIVPLGS 181

Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              K +                +   F+N+   ++    F    K  A +A + K  + H
Sbjct: 182 IAAKCVQEYIAKGRPKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANITKEITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT              R+  V D   
Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTK---------NRLKEVYDKAH 292

Query: 348 P 348
           P
Sbjct: 293 P 293


>gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
 gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1]
          Length = 296

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 101/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ IS+ +  ++ +    D +        +      +  + +  
Sbjct: 5   LEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +  +    
Sbjct: 65  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDT 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
            +    + R   E L  +G+R S+        +  ++  I+   K      V + +  + 
Sbjct: 125 NTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALS 184

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L                   +  F+NN   ++         K      G+ K  + H +
Sbjct: 185 WLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278


>gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis
           HKU09-01]
          Length = 295

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY K       L+ N+  ++    D+            I     + I+  +      
Sbjct: 4   IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            SSA    +F++++R   ++A+R++Y A +P + +E PK + +       +++ +     
Sbjct: 64  GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E +  +G+R S+     ++++   +  ++          + L D  
Sbjct: 124 DLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    K+ + K+   H +
Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040]
          Length = 411

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 20/351 (5%)

Query: 14  ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
                G   Y  +   G   RR+ +    + T   A   A                 S  
Sbjct: 51  RVMPSGAKTYQAQYRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQH 110

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           +K  T+  L   + ++        +++  +    D  I    G F    +  + I     
Sbjct: 111 RKAPTVAALCERFFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHH 170

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
             +  P  A + L  +  +F  A                PK +      +  +   Q   
Sbjct: 171 KFRDKPHQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRERFLSQSELQRLG 230

Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                     SE      AF  L+ +G R  +       ++  N   +   KTG      
Sbjct: 231 QVLTEVEREGSETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKTGARRIPL 290

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                  L  +       + I        AT     ++    +AG+     H +R   A+
Sbjct: 291 PQPARDVLARLPRTPGHPYVIEGKLPGQYATDLQHPWRRIRDRAGLCGVRIHDLRHTYAS 350

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344
            +  AG     +    G   +     Y   AD    +   +N+ R+ S+V 
Sbjct: 351 NAVSAGMPIQMVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSMVG 401


>gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 308

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 20/283 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
             +  +  S +    ++ N+  ++ S  D+        +   +T   I    +       
Sbjct: 20  DYLETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLKGENLMTVTGLDIESYLAHRVDLGL 79

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
            P S  + +++++  +++ VR++ ++ +P L++ +PK      +  ++ +++   +  + 
Sbjct: 80  KPRSTARSISALKRFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEVEALLNAPNT 139

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
               G + +   E L  +GLR S+     ++ +           K      V L +  M 
Sbjct: 140 EEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMY 199

Query: 244 LL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            L          M     +  F +     M    F    K  A  A V    S H +R  
Sbjct: 200 WLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTMRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            AT   + GA    +    G   +   + YT  A+     +  
Sbjct: 260 FATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHA 302


>gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026]
          Length = 296

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ +S+ +  ++ +    D +        +      +  + +  
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +       
Sbjct: 65  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124

Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
            ++     R   E L  +G+R S+        + + +  I+   K      V + +  + 
Sbjct: 125 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVALS 184

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L                   +  F+NN   ++         K      G+ K  + H +
Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278


>gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
 gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533]
          Length = 296

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ +S+ +  ++ +    D +        +      +  + +  
Sbjct: 5   LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +       
Sbjct: 65  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124

Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
            ++     R   E L  +G+R S+        + + +  I+   K      V + +  + 
Sbjct: 125 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L                   +  F+NN   ++         K      G+ K  + H +
Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 278


>gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
 gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771]
          Length = 296

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 89/271 (32%), Gaps = 25/271 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPS 131
           Y  +     LA N+  ++       +    D   +        T       ++ +  +P+
Sbjct: 10  YYLAVE-RGLAENTLSAYRMDLQNFLSFCQDKQIKSWSDAGKNTILMYMMFLKQQAMSPA 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187
           +  + L +++  F++   ++ V  +P  S+E PK   +     +  ++     Q K    
Sbjct: 69  TISRRLAALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEVELLLMQPKISQP 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE---------- 236
            G + +   E L  +G+R S+     ++ +      I+          V           
Sbjct: 129 AGIRDKAMLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERIVPLGSLSASFVE 188

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                    L          F+N+  Q++    F    K    +  ++K  + H +R   
Sbjct: 189 EYLQKGRVKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKIDKPITPHTLRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + GA    +    G   +   + YT 
Sbjct: 249 ATHLLENGADLRSVQEMLGHADISTTQIYTH 279


>gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP]
 gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP]
          Length = 276

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 98/281 (34%), Gaps = 18/281 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E+         + N+   +  Y  + + +    D    +     + ++   ++  S  
Sbjct: 3   IEEFEMYLELEGKSQNTVRMYSYYVKKFLEE--GNDLNARSALRFLAVLKRSGYSNKSLN 60

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193
             + +++  F++              ++ PK      +  TKE++++  S       + R
Sbjct: 61  LVVQALKAYFRFEG-----LEEEAKKIKSPKVPRSLPKSLTKEEVKKLLSVIPPTRKRDR 115

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           L    L  SGLR S+ C   +  +        ++  K G    V +P   +K +      
Sbjct: 116 LIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGGKGGKDRIVPVPGALLKEIEDYLKM 175

Query: 252 KETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +             + K +++             KAG+  + H +R   AT   + G   
Sbjct: 176 RNDDSEYLLVEERRSRKDRLSPKTVWYILNKYGKKAGIKVTPHMLRHSFATHMLENGIDI 235

Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344
             +    G   +   + YTK   + +R   + ++ I S+++
Sbjct: 236 RVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKAKLIESLIE 276


>gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
 gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785]
          Length = 302

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128
           + +Y + S     L+ N+ +S+ +  ++ +    D +        +      +  + +  
Sbjct: 11  LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSWEVDYLVVDAFLATQKDKGK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  ++W +RQ+ +  +P + ++ PK +       ++E++ +       
Sbjct: 71  ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 130

Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
            ++     R   E L  +G+R S+        + + +  I+   K      V + +  + 
Sbjct: 131 NTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 190

Query: 244 LLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            L                   +  F+NN   ++         K      G+ K  + H +
Sbjct: 191 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 251 RHTFATHLLENGADLRVVQEILGHSDITTTQIYT 284


>gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
 gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1]
          Length = 295

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR--- 126
           +I EY         L+ N+  ++    ++      +     I     + I+  +      
Sbjct: 4   IIEEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLEERKITHIDFVDRQVIQECLGHLIDL 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  V+ +   +  ++          V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 365

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 108/364 (29%), Gaps = 37/364 (10%)

Query: 14  ERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
              + G   Y   Y     G+R             A    L      ++          T
Sbjct: 4   YIRKRGNRYYPMIYLGYIGGKRKYKSGGGFDKRSEAKEELLKMQNKIKKNSIMIEADDMT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH- 128
              L  ++ +     +++  +  +++   ++ ++   G+   + I   HI+  + + KH 
Sbjct: 64  FGELAEQWYEMHAKPTISYRALENYKGILNKSLVPAFGNVKLKTIQPIHIQRYLMTLKHL 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P++  ++   ++ +    V  + + I+P   +  P   T+    W    + +F +   +
Sbjct: 124 SPATIRKYFYVLKSIMDKGVEWKILEISPIKGITLPSLTTQEFTVWDNVQINKFLN-IVK 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
            ++  + F     +G+R  + C             I   ++                   
Sbjct: 183 DTKWYVPFLLAFTTGMRQGEICGLKWSDYNTITGDISVSRSMQRNFKLKDTKTKSSRRKI 242

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                            +    LL    I       +N+ + +N       FK    +  
Sbjct: 243 VLLKKTKLALDYQKRCQEENENLLGKQYINSGFICTHNNGESINPENLGKTFKKLIKEYK 302

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           +     H +R   ATI    G     +    G   V      Y+       L     +++
Sbjct: 303 LEPIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHVLPD--LQKDTMQQL 360

Query: 340 SSVV 343
             ++
Sbjct: 361 EGIL 364


>gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
 gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B]
          Length = 321

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 105/313 (33%), Gaps = 24/313 (7%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQI 102
           + A  +       + E   +P K       LI  +         L+ N+  ++ +   Q 
Sbjct: 1   MSAKANTSRKGGKRPEKSGAPLKPSAAGMALIDAFLDELWSLQGLSDNTLSAYRTDLCQF 60

Query: 103 IRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                    G      +T +   +    +    +S  + L+S+R  ++  +    ++ +P
Sbjct: 61  DAFLTAKGIGLLALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDP 120

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213
              +E PK         ++  ++Q  +  S       + +   E L  +GLR S+    G
Sbjct: 121 TALIESPKLPKSLPGSLSEAQVEQLLAEPSSDDPVECRDKAMLELLYATGLRVSELVGLG 180

Query: 214 VQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQ 262
           +  L      ++    G     V + +     L     G              F +N  Q
Sbjct: 181 MSELGLRQGLVRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQ 240

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +M    F    K  A +AG+    S H +R   AT   + GA    +    G  ++   +
Sbjct: 241 QMTRQTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQ 300

Query: 321 TYTKGADRIRLGI 333
            YT  A R RL  
Sbjct: 301 IYTHVA-RTRLAD 312


>gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S]
 gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
 gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578]
 gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923]
          Length = 297

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +          D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
              +    G + +   E L  +GLR ++     +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 333

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 126/339 (37%), Gaps = 11/339 (3%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M   L    +VT +  + G++ YYFR+G   +     P    F  AY +  +G + K+  
Sbjct: 1   MVKKLER-KYVTTKTVK-GRVYYYFRRGETYQRLPNDPDSQEFDNAYWAIRSGRSQKQ-- 56

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                   TT + LI  Y ++  +       +  +    + I  K+G  D+ K+  +++ 
Sbjct: 57  ------TKTTFEALIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVI 110

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  ++   T   A   +  + +L + A+  E++  NP   V++ K       P  K    
Sbjct: 111 AARDAYADTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLKGGEYQPWPAAKLRAF 170

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +             A+   + +G R  D       H      S+  +KT   + V  P+ 
Sbjct: 171 EAYCESGSLEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEF 230

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
               L   P         +  + +          A   K G      HG R  +A   A+
Sbjct: 231 LRTYLDNLPRSGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAE 290

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AGA+  E+ A  G KT++  + Y   A++ RL      R
Sbjct: 291 AGASDSEIQAVTGHKTLEMVKKYRNQANQKRLSQAAQAR 329


>gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
 gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590]
          Length = 295

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY K       L+ N+  ++    D+            I     + I+  +      
Sbjct: 4   IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            SSA    +F++++R   ++A+R++Y A +P + +E PK + +       +++ +     
Sbjct: 64  GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E +  +G+R S+     ++++   +  ++          + L D  
Sbjct: 124 DLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L                    F+N   + ++        K    K+ + K+   H +
Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e]
 gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland
           1988]
 gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL
           R2-561]
 gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161]
 gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
 gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28]
 gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD
 gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e]
 gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854]
 gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165]
 gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900]
 gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818]
          Length = 297

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +          D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236
              +    G + +   E L  +GLR ++     +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
 gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 88/307 (28%), Gaps = 29/307 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
            + S       L  +  E+ +        +  +  S+    ++      +      +   
Sbjct: 4   EVTSEEAAKKQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVD 63

Query: 119 IRSGVE-----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +             K + SS  + L+++R  + + +R + V +NP   +  PK  
Sbjct: 64  KAVMFDYVTLLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLN 123

Query: 168 TEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                  T + M      +        + R   E +   GLR S+ C   +  L  N   
Sbjct: 124 RTIPEFLTFDQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERI 183

Query: 224 -IKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWF 273
              T K      V        LL                   F++     +      +  
Sbjct: 184 LTVTGKGDKQRIVPFYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRAVQLIL 243

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
                 AG+      H +R   AT   D G     +    G  ++   + YT    DR++
Sbjct: 244 AQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLK 303

Query: 331 LGIKNSR 337
             +  + 
Sbjct: 304 QSVDAAH 310


>gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
 gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01]
          Length = 298

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKH 128
           LI +Y         L+ N+  ++                  +T       ++  ++ R  
Sbjct: 7   LIDQYMNYLLVEKGLSQNTLEAYGKDLGVFTDFLQKRKIDDLTKADTPDIVQHLIDLRAQ 66

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + L ++R LF +  +++ +  NP   V+ PK         +  +++Q     
Sbjct: 67  GLGARTRARHLVAIRGLFSFLEQEKIIKHNPAKLVDLPKTGLHLPDVISVVEIEQLLEAP 126

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +E    G++ R   E    SGLR S+     VQ +  +   ++          V +    
Sbjct: 127 NEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKERIVPMGRQA 186

Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + +                    F+    + M    F    K  A KAG+  N + H +
Sbjct: 187 REKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGIAKNITPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   A+   + GA    +    G   +   + YT  A R RL
Sbjct: 247 RHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVA-RERL 287


>gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC
 gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 286

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 88/277 (31%), Gaps = 18/277 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +Y    H   L+ ++ +++     Q +      D + + ++  HI   ++      +   
Sbjct: 10  DYL--MHVRRLSDHTVVAYVGDVKQFLCFLIENDIELKDVSRLHIEEYIKKLSKQKTKLN 67

Query: 135 -----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                + ++S+R  F +         NP   +  PK +          ++Q+   F  + 
Sbjct: 68  STSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLLEFSMKN 127

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM 247
            +  L    L + GLR S+ C   V+ L  +     I   K      V L     + L  
Sbjct: 128 QRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKDRIVPLTSKLAEKLEN 187

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                      ++   + K++ +      +      G+ K    H +R   AT     G 
Sbjct: 188 YITSCGKSPEDYLFGSQIKIHPSTVFRIVRKYTMMCGIKKRIHPHTLRHTFATHLLQKGV 247

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               +    G   +     Y    D+ +       ++
Sbjct: 248 NIRVVQDLLGHSNLSTTSVYLHVVDQEK--FDAINKL 282


>gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262]
 gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD
 gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262]
 gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378]
 gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023]
          Length = 297

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +          D   +    I    +   
Sbjct: 3   DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYMDTSRTLTDPDTLERNDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +P S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  KEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235
              +    G + +   E L  +GLR ++  +  +  L     F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +  +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b]
 gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b]
          Length = 325

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 16/320 (5%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +LP +V     R  K   YF +G+  +     P  + F   Y   L G         +
Sbjct: 3   KRQLPKYVYA---RGRKGYPYFIRGNTCQRIFAEPGSNAFWAEYNRLLNG---------A 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     T+  LI  Y +S  W   A N+R S+E  F     K G  D   I  +H+    
Sbjct: 51  PTAPKRTINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++   TP++A + + ++ VL   A+   +V         +    T+    W  + ++ F+
Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQLDGTKTREAWPVDMVEAFR 170

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +      Q  L FE L+ +G R  D        +++N   ++  KT   + +      + 
Sbjct: 171 TA--ATGQTLLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLLD 228

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGA 302
           +L         + IN++  ++       W      + G  +   HG+R  +A+  A  G 
Sbjct: 229 ML-NKTPRNALYIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALGM 287

Query: 303 TAHELMATYGWKTVDQAETY 322
           T  E+M+  G  +      Y
Sbjct: 288 TDEEIMSITGHTSAAMVRLY 307


>gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4]
 gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4]
          Length = 392

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 14/341 (4%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREY 60
           TP      ++ +   + G + Y   +  GR +R+  P   S F P Y   +  +      
Sbjct: 43  TPHANKAKYLLEMPRKSGPVYYVQTRKGGRALRIQSPADSSEFWPEYGRLVGRALSDPGP 102

Query: 61  INSPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           I+         +  LI+ YR+S  + SL  N++ ++    ++I    G  ++R ++ + I
Sbjct: 103 ISPTTACGRHKIAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTLSRQDI 162

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R  +++      +A QFL  +R L  W  ++ Y    P   ++   +   G   W++E++
Sbjct: 163 RLAMDNMPI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAWSQEEV 220

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             + +    G+Q RL  + L ++G+R  D  R G  H+++   +I  QK G  +T+ L  
Sbjct: 221 DTYLTAHPIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVTIPLNP 280

Query: 240 G---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-------HGV 289
                +                  +   ++  F+  F+A    AG+  +A       HG+
Sbjct: 281 DLEVSIDATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAVSGHGL 340

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           RKF+     + G T  E  A +GW+     + Y++  DR R
Sbjct: 341 RKFALISVLENGGTIREAQALFGWRDAAMVQHYSEELDRER 381


>gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism]
          Length = 323

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 107/293 (36%), Gaps = 24/293 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---S 125
             LI+EY  +      L+ N++ S+     Q              +    ++  ++    
Sbjct: 31  SQLIAEYLDAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALVQDYLDIRLQ 90

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K +  ++ +FL+ +R L+++ +R+  ++ +P   ++ PK      +  ++ D++   + 
Sbjct: 91  QKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSLPKSLSETDVEALLAA 150

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E L   GLR ++     +  +      ++          + + + 
Sbjct: 151 PDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQNVVRVMGKGSKERLIPMGEE 210

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               L              +  E  F +   Q M    F    K  A  AG+ K  S H 
Sbjct: 211 AAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFWYRIKHWAMVAGIKKDLSPHT 270

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +R   AT   + GA    +    G   +   + YT  A ++R+  ++++    
Sbjct: 271 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KLRMKQQHAQHHPR 322


>gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
 gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata
           D2]
          Length = 301

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 96/276 (34%), Gaps = 20/276 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
            + ++ ++      ++ N+  ++ +   +           ++  + ++  +  R      
Sbjct: 14  FLEQFLEAIWLEQGVSENTLAAYRTDLTKFAEFILPKGLIEVEQQDVQYYLAHRLDNGFK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           P S  + +++++  +++ +R++ ++ NP   + +PK      +  ++E++ +        
Sbjct: 74  PRSTARTVSALKRFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLLDAPDLE 133

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + +   E L  +GLR S+     ++ +           K      V + +  +  
Sbjct: 134 EPIGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPMGEEALDC 193

Query: 245 LAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           +                +  F +     M    F    K  A  AG+    S H +R   
Sbjct: 194 IERFIKEGRPQLIKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIESELSPHTLRHAF 253

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    +    G   +   + YT  A   
Sbjct: 254 ATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKER 289


>gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909]
          Length = 295

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126
           +I EY         L+ N+  ++     +      D     I     + I+  +      
Sbjct: 4   IIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +        ++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVIALLETP 123

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
               + G + R   E L  +G+R ++  +  V+ +   +  ++          V L D  
Sbjct: 124 DLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 297

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRK---ITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +              +    I    +   
Sbjct: 3   DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D++    
Sbjct: 63  KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235
              +    G + +   E L  +GLR ++  +  +  L     F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +  +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1]
 gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like
 gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1]
          Length = 282

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 18/285 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  +I EY         + N+   +  Y  + +   G+   R        + +    ++ 
Sbjct: 4   INEVIEEYETYLDLEGKSPNTIRMYSYYVRRYLEGGGELKARS--ALRFLAKLRREGYSN 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    + ++R  F++              +  PK      +  T+E++++  S      
Sbjct: 62  KSLNLVVQALRSYFRFEG-----YDEEAEKLRPPKVPKSLPKSLTREEVRKILSVIPPTK 116

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP-------DG 240
            + RL F  L  +GLR S+ C      +        ++  K      V +P         
Sbjct: 117 KRDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGGKGAKDRVVPIPAFLLEGIKA 176

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           +++                 K K++        K    +AG+  + H +R   AT   + 
Sbjct: 177 YLETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGDRAGIRVTPHMLRHSFATHMLEN 236

Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344
           G     +    G   +   + YTK   + +R   + +R I  +++
Sbjct: 237 GVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKARLIEGLIE 281


>gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD
 gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 295

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 25/288 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
             +I EY K       L+ N+  ++     +            I       I+  +    
Sbjct: 2   DTIIEEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFLELQKISHIDFIDRASIQQCLGYLH 61

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +SA    +F++++R   ++A+R++Y A +P + +E PK   +        ++     
Sbjct: 62  DNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVLALLE 121

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                   G + R   E L  +G+R S+  +  ++ +     F     K      V L D
Sbjct: 122 TPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKERIVPLGD 181

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L                    F+N   + ++        K  A KA + K  + H
Sbjct: 182 TVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANITKSLTPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
            +R   AT   + GA    +    G   +   + YT  +  +IR    
Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYN 289


>gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR]
 gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR]
          Length = 295

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 111/285 (38%), Gaps = 27/285 (9%)

Query: 72  KWLISE--YRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           K LI E  Y  +     LA N+  S+    ++    + K G   +      ++ + +   
Sbjct: 2   KALIEEFIYYLTVE-RGLAENTLESYARDLERYSAFLSKHGITKFEATNKTNVMAYLLHL 60

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +      S+  + L S++  +++ +R++++  +P +++E PK + +  R  + E++    
Sbjct: 61  QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILL 120

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
            Q +     GS+ +   E L  +G+R S+     + H+   +  ++          + + 
Sbjct: 121 NQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIG 180

Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               K +                    F+N+  ++M    F    K  A +AG+ K  + 
Sbjct: 181 SLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT    R RL
Sbjct: 241 HTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLT-RGRL 284


>gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
 gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144]
          Length = 295

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126
           +I EY         L+ N+  ++     +      D     I     + I+  +      
Sbjct: 4   IIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
               + G + R   E L  +G+R ++  +  V+ +   +  ++          V L D  
Sbjct: 124 DLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 298

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 18/274 (6%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126
            I  Y        + +  +  ++ +   Q +      G  D   +T   +R  +     +
Sbjct: 13  FIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFLKKK 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             + ++  + L S+R L+K+  +   +  NP   ++ PK   +     +  D +   +  
Sbjct: 73  NPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILLNQP 132

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVEL 237
                 G + +   E L  +G+R S+     +  +  +   +K +  G+      +    
Sbjct: 133 DTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVGNHA 192

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295
            +     L       E  F+N    ++     +   +    KA   +  S H  R   AT
Sbjct: 193 LNAIQLYLEKRKADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPHTFRHSFAT 252

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              D GA    +    G  ++   + YT      
Sbjct: 253 HLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTER 286


>gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
 gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119]
 gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis
           C80]
          Length = 295

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I E+ K       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEFLKFIQIEKGLSDNTIGAYRRDLAKYEEYMKEHKIAHIDFIDRQVIQECLGYLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +SA    +F++++R   ++A+R++Y A +P + +E PK + +       E++ Q     
Sbjct: 64  GASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+  +  ++ +   +  ++          + L D  
Sbjct: 124 DLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + +         K    KA +NK+   H +
Sbjct: 184 IEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQ 290


>gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
 gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like
 gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638]
          Length = 286

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 106/292 (36%), Gaps = 19/292 (6%)

Query: 67  KPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TL+  ++ E+         + N+   +  +  + + +   +           + + +
Sbjct: 2   REKTLRSEVLEEFATYLELEGKSKNTIRMYTYFLSKFLEE--GYSPTARDALRFLAKLRA 59

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++  S    + +++  FK+              +  PK      +  T+E++++    
Sbjct: 60  KGYSIRSINLVVQALKAYFKFEG-----LNEEAERLRNPKIPKTLPKSLTEEEVKKLIEV 114

Query: 186 WSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242
             +   + RL    L  +GLR S+ C   ++ +        ++  K G   T+ +P   +
Sbjct: 115 IPKDKIRDRLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGGKDRTIPIPQPLL 174

Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
             +      +              +K+K++        K    KAG+  + H +R   AT
Sbjct: 175 TEIKNYLRRRTDDSPYLFVESRRKNKEKLSPKTVWRILKEYGRKAGIKVTPHQLRHSFAT 234

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346
              + G     +    G  ++   + YT+  A  ++  ++ +  + +++  +
Sbjct: 235 HMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERANLLENLIGGE 286


>gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
 gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107]
          Length = 299

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 24/280 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
             L+ N++ S+    +Q           D   +T   +++ +  R     +  S  +FL+
Sbjct: 20  KGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTATEVQAYLAWRHQQHLSSRSTARFLS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            +R  ++  +R+ ++  NP   VE PK      +  ++ D++   S        G + + 
Sbjct: 80  CLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDPVGLRDKT 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248
             E L   GLR S+     +  +      ++          V + +     L        
Sbjct: 140 MLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQRYLREAR 199

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    E  F ++  Q M    F    K  A  AG+NK  S H +R   AT   + G
Sbjct: 200 PVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKPLSPHTLRHAFATHLLNHG 259

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           A    +    G   +   + YT  A R+R+  +++     
Sbjct: 260 ADLRVVQLLLGHSDLSTTQIYTHVA-RLRMKHQHAEHHPR 298


>gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13]
 gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13]
          Length = 298

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 21/278 (7%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130
           ++ ++  S      L+ N+  S+     Q+     + D   IT   I+  +  R      
Sbjct: 11  IVDQFINSLWLEDGLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQEYLAYRFPLSKS 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L  +R  +++ VR+  +  +P L +E PK      +   + ++++  +  +   
Sbjct: 71  RSIARLLACLRRFYRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEVEKLLNAPNISD 130

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R   E L   GLR S+     V  +  N   I+          V + +     +
Sbjct: 131 DQGLRDRAMLELLYACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLVPMGEEASHWI 190

Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                            +  F+      M    F    K  A  +G+    S H +R   
Sbjct: 191 EQYLKSSRDNLLKEKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHAISPHVLRHAF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT   + GA    +    G   +   + YT  A R RL
Sbjct: 251 ATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287


>gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773]
          Length = 298

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 32/304 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE 124
             T+   I++Y         L+ N+  S+     Q              +    + + + 
Sbjct: 2   TPTINLAIADYLHYIRIERGLSDNTINSYRQDLTQFGAYLTAEKLTLEAVDHVVVLAWLN 61

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    + +S I+ +TS+R  F +  +++ V  NP   ++ PK+ T      +  ++  
Sbjct: 62  QLRLVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDA 121

Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVE 236
                        + R   E +  +GLR S+     +  L   +       K      + 
Sbjct: 122 LLAVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NK 284
           + +     L           +                          K    +AG+  + 
Sbjct: 182 IGEVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           S H +R   AT   + GA    +    G   +   + YT  +          +R+S V D
Sbjct: 242 SPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISK---------KRLSEVYD 292

Query: 345 SDDP 348
              P
Sbjct: 293 QYHP 296


>gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 432

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 141/365 (38%), Gaps = 32/365 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSPRKK 67
           P ++    RHGK+ + +R    R + LP P +  F  AY +A+ G   PK   +  P   
Sbjct: 6   PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKITTK 117
            P T        + S  W +L   S+   +   ++ +             D   + +   
Sbjct: 65  LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI   +     TP  A   L  +R L   A+RQ+++ I+P  +VE         + W++E
Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEWRPAYAGW-KAWSRE 183

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-----------------LQNN 220
            M QF++ W  G+  R  +   L+ G R  D                             
Sbjct: 184 AMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDIV 243

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               K +  G  + V +     ++L       ET  +N   +  +A   +         A
Sbjct: 244 QGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKLA 303

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+ K  + HG+RK      A+A A+  ++M   G   +D AE Y++ A ++RL ++   R
Sbjct: 304 GLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMDR 363

Query: 339 ISSVV 343
           +  +V
Sbjct: 364 VVRLV 368


>gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
 gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 87/282 (30%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126
            I  +        + + N+  ++ +   Q I                IT   IR  +   
Sbjct: 5   AIDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKTKTLNDITHLDIRGFLAYL 64

Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K + +   +  + L+++R  F++   +  V+ +P   V+  K   +        +++   
Sbjct: 65  KESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALL 124

Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
           S       G + R   E L  +G+R S+     ++ +     F I   K      V    
Sbjct: 125 SAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKERVVFFGS 184

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              + L              +  +  F+N +  ++                 +    S H
Sbjct: 185 KAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLNAKISPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G  ++   + YT      
Sbjct: 245 TLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKER 286


>gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD
 gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A]
 gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144]
 gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045]
          Length = 295

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126
           +I EY         L+ N+  ++     +      D     I     + I+  +      
Sbjct: 4   IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R ++  +  V+ +   +  ++          V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
 gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724]
          Length = 296

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 94/275 (34%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHT 129
           + ++     +  +++ N+  S+    +  I        + + +  +  +  + S   ++ 
Sbjct: 5   LEDFLFYLKFEKNMSPNTIDSYRRDLEDFIIFLQKEKVNIKNLKREEWQRYLVSLYNRYK 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             S  + ++S+R   K+ +R+ Y+  N    +  PK           ++++ F       
Sbjct: 65  IKSIARKISSIRSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKEIENFLKIPDPL 124

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
              G +     E    +G+R S+     VQ +      ++          + L D  ++ 
Sbjct: 125 SPLGIRNIAILETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKERIIPLGDYAVES 184

Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L    + +++F   ++K        +++         K  +   G+ K  S H  R   A
Sbjct: 185 LKKYLLVRDSFNPKDEKALFLNKKGERITRQGVWFIIKTYSKILGLPKKVSPHTFRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T     GA    +    G   V   + YT      
Sbjct: 245 THLLSNGADIRIVQELLGHSDVATTQIYTHIVSSK 279


>gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 297

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  +++      +          D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVEKGLSANTIKAYQRDLRYFVSYMETSKNLTDPNILERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235
                   G + +   E L  +GLR ++  R  +  L  +  F     K      +    
Sbjct: 123 SSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +  +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
 gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989]
          Length = 291

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
             LI  + K  +  +  +  +  S+++  +Q              +    + +       
Sbjct: 2   DELIERFLKYIYRKNTQSEKTIESYKNDLNQFKEYLTSQSIDSFESCDRLTFMNFLATLD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS  + ++  R  + +      +  NP + ++ PK+  +       E++Q+F + +
Sbjct: 62  HLKASSIARKMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFLFVEEIQEFLNSY 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240
           ++      + R+ F  +   GLR S+      + +   N I  I+ +     I       
Sbjct: 122 NDEKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGF 181

Query: 241 FMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             +LL         + I++           ++          ATK G+      H +R  
Sbjct: 182 EKELLEYKSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   D GA    +    G  ++   + YT  
Sbjct: 242 FATHLLDNGADIRVVQELLGHSSLSTTQIYTHV 274


>gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD
 gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228]
 gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135]
 gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028]
          Length = 295

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVES---R 126
           +I EY         L+ N+  ++     +      D     I     + I+  +      
Sbjct: 4   IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  +F++++R   ++A+R++Y A +P + +E PK + +       +++       
Sbjct: 64  GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R ++  +  V+ +   +  ++          V L D  
Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA +NK+   H +
Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 380

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/374 (10%), Positives = 114/374 (30%), Gaps = 45/374 (12%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YYF  G   G+R ++     +T   A  +  +         +  ++   +  
Sbjct: 6   RKRGSSWYYYFEAGKINGKRNKIERKGGNTKKEALAALRSALNELSSTGSCVQETNMSFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  +       +   N++ +++++ +  +    G +  +++    ++  +  +     
Sbjct: 66  DYLDYWFNEYVMKNCKYNTQQTYKTFININLKPNLGIYKLKQLNYAGLQEFLNKQYAHGY 125

Query: 132 SAIQFLTSMRVLFK-------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S    L  +R +         +      V     L++ R    ++     + E+  +   
Sbjct: 126 SKN-TLARLRSIITHSLEMAVFPYDLIKVNPAQYLTIPRFDNISKKNIVISIENFNKITE 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQ 227
            +  G+   +  +    +G+R  + C      +                          +
Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFENKTIKVEKILIFKTKQGYEFSTPK 244

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWF 273
              +I T+ + D  + +L      +E       +                   T      
Sbjct: 245 TKKSIRTISIGDTLINILKAHKKWQEQNKQEYGEYYNDNNFVCTKENGSFVTMTSLRYLS 304

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
           K    +  +  + H +R   AT+  + GA   ++    G  ++      Y+   +  ++ 
Sbjct: 305 KIVNMELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTN--KMK 362

Query: 333 IKNSRRISSVVDSD 346
                 + +++++ 
Sbjct: 363 NDTVNILENMINNK 376


>gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 299

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
           + L+ ++ +       LA N+  S+       +          I       I S +   +
Sbjct: 6   EELLKQFLEFLSVEKGLARNTIESYRRDLKSYLVFLRSQHIPDIKFTSKTTIISYLLLMQ 65

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    SS  +   +++  + + VR+ Y+  +P ++++ PK + +  R  T E++++   
Sbjct: 66  KSGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLE 125

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + +   E L  +G+R S+     V  +  ++  ++   K      V +  
Sbjct: 126 QPDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLGKGSKERIVPIGS 185

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  L                    F+N+  Q +    F    K  A KAG+NK  + H
Sbjct: 186 FAVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYARKAGINKVITPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 246 TLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTH 282


>gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
 gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2]
          Length = 300

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126
           K  + +Y         LA N+  S+E      ++   +       +K+   HI + +   
Sbjct: 5   KDALDDYIHFLRVERQLADNTLSSYERDLKVYLQYLKEVEQLESLKKVERVHILNHLRHL 64

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
           K    TP +  + ++S+R   ++ +R+  V  +P + +E P+   +     + E+    +
Sbjct: 65  KETTKTPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEVDALI 124

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII----- 233
           Q   +  + G + +   E L  SG+R S+     ++ +   +  ++    G         
Sbjct: 125 QVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERIIPLG 184

Query: 234 ------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                      +     L  +    +  FIN   +++    F    K  A KAG+ K  +
Sbjct: 185 KSALTSCQTYLEQGRIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQKELT 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT  +   
Sbjct: 245 PHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTR 288


>gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. Hall]
 gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
          Length = 379

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/372 (11%), Positives = 118/372 (31%), Gaps = 45/372 (12%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YYF  G   G+R ++     ST   A  +            +   +   ++ 
Sbjct: 6   RKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISIS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
                + K     +   N++++++    + I    G +  + +T   ++  +  +     
Sbjct: 66  DYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLNKKYRNGF 125

Query: 129 TPSSAIQFLTSMRVLFKWA------VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             ++   F   +    K A      +++  +         +     + ++  + E+ ++ 
Sbjct: 126 AKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLENFKEI 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226
            + + EGS   +  +    +G+R ++ C      +                         
Sbjct: 186 INRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEWIFGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIW 272
           +   +  T+ + +  + +L      +    +   K   ++                    
Sbjct: 246 KTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKYL 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
            +    +  +  + H +R   AT+  +AGA   ++    G   +     TY+   + ++L
Sbjct: 306 SRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKL 365

Query: 332 GIKNSRRISSVV 343
              +  R  +++
Sbjct: 366 --DSVNRFETII 375


>gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 295

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 104/284 (36%), Gaps = 25/284 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR- 126
           + L+ E+         L+ N+ +S+ +   +      K+G     +     + + +    
Sbjct: 2   EKLLEEFIYHLAVERGLSENTLVSYRADLAKFISFCAKAGLKSVEQAGRDTVMAYLFQLQ 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + ++  + L S+R  +++AV +  +  +P   +E PK   +  R  + E++     
Sbjct: 62  LDGRSTATISRHLASIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEVDLLMG 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                   G + +   E L  +G+R S+     ++H+      ++    G+         
Sbjct: 122 QPGSGEPAGLRDKAMLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRERIIPVGD 181

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                ++      +     P   +  F+N   +++    F    K  A KA + K  + H
Sbjct: 182 VAVRWLKEYLERARYKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIKKVITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT    +R+R
Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLR 285


>gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 107/294 (36%), Gaps = 23/294 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
           +      Y         + N+  ++     Q  + +GD D   IT   I   R  ++S++
Sbjct: 3   ISECAELYLAYLA--DKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKR 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L  +   F++ +  E ++ +P     RPK   +     T E++++     +
Sbjct: 61  LKSSTIARKLACLNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIE-NA 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +    +L  + LL +GLR ++      +++                  E    ++K+L  
Sbjct: 120 DNIMDKLIIKILLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGK 179

Query: 248 TP---------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                                  +  +    ++             KAGV    H +R  
Sbjct: 180 GNKERIVPLSENVLEELFNYLKKYKVSPIFPISYHSLWRRIINIGKKAGVILHPHKLRHT 239

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +AT++  +GA    +    G  +      Y K  ++ +L I+ ++++S+ + SD
Sbjct: 240 AATLALQSGAELRVIQELLGHASPLTTARYAK-VNQKQL-IEATKKLSNSIFSD 291


>gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
 gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC
           27560]
          Length = 295

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 74  LISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESR 126
           +I E+  +       + N+ IS++    +           +I        +     +   
Sbjct: 4   IIEEFILQLHTKKDTSSNTEISYKRDLTKFFEYLNIGSIEEIKNITKHDLEGYIKHLSDI 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++  + + S++  F +   +E +  NP + ++ PK   +     T   +       
Sbjct: 64  GRATTTISRNVASIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQVDALLEQP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------ 236
           S+ S    + +   E L  +G+R ++     +  +      +          V       
Sbjct: 124 SKNSPKELRDKAMLELLYATGMRVTELITLKMDDVNLAQEYVVCHDRKKERIVPFGSDAK 183

Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
                      + L          F N     M+   F    K    KAG+    + H +
Sbjct: 184 KALVRYITDGREYLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGIETELTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A+   + GA    +    G   +   + Y    ++ 
Sbjct: 244 RHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKR 283


>gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067]
 gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171]
          Length = 297

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRK---ITTKHI---RSGVE 124
            LI ++         L+ N+  ++E      +              +    I    +   
Sbjct: 3   DLIDDFLHFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQ 180
               +  S  +++ S+R  F + +    ++ +P + +E PK+     +       +  + 
Sbjct: 63  KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS 122

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235
              +  S G + +   E L  +GLR ++  +  +  L     F     K      +    
Sbjct: 123 SSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGK 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +  +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 298

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I++Y + S     L+ N+  +++    + +    +     +    +      +   
Sbjct: 4   LAEQINDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++ +   
Sbjct: 64  DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 123

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R+  E L  +G+R S++    +  +  N+       K      + +  
Sbjct: 124 QPDLTTDLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSA 183

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             +  +      ++             F+N+   ++         K    +AG+  + + 
Sbjct: 184 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 244 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280


>gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
 gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731]
          Length = 301

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 32/296 (10%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130
           I+ + +       LA N+R S+                  +  + I + +   K   + P
Sbjct: 14  INLFLEYLTVELGLAYNTRESYGRDLRLFAGWI-KKPLEDVKREDILAYMRMLKVHQYAP 72

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           +SA + L +++  F++   + ++  +P   VE   R     +  + E+++Q  S      
Sbjct: 73  TSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDLTQ 132

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245
            EG + R   E +  +G+R S+        +      +     G     + L    ++ L
Sbjct: 133 PEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQYL 192

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
                     F+ N               M   +F    +A   KAG+    + H +R  
Sbjct: 193 KKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKPLTPHILRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   D GA    +    G   +   + YT   +          R+  V D   P
Sbjct: 253 FATHMLDNGADLRTVQELLGHADISTTQIYTHLTN---------NRLKKVFDKTHP 299


>gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124
           L+  I +Y + S     L+ N+  ++    ++ +                      +   
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGVSSWPTEASDVDAFLARQR 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E++ +   
Sbjct: 66  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLE 125

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E L  +G+R S+     +Q +  ++  I+   K      + +  
Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185

Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +                   E  F+NN   K+         K     AG+  + +
Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus]
          Length = 293

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
 gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b]
 gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d]
 gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           + +Y + A     L+ N+ +S+     +             ++    I S +   +    
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  +    +    +
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDT 124

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231
               G + R   E L  +G+R S+        +   +                 +    +
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            I         K L  +   ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
 gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC]
          Length = 301

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124
           L+  I +Y + S     L+ N+  ++    ++ +                      +   
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++SMR  ++W  RQ    +NP L ++ PK++       + E++ +   
Sbjct: 66  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLLE 125

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E L  +G+R S+     +Q +  ++  I+   K      + +  
Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185

Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +                   E  F+NN   K+         K     AG+  + +
Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
 gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 92/264 (34%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+  ++       +    ++ G  D  ++    +   +           S  + L
Sbjct: 16  RGLSENTLQAYRRDIGSFLVYCEKERGISDISQVKRHDVVDFLGWLLKGGRAYSSLARTL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193
           ++++  F++  ++ Y+  NP  ++E P+      R  +  ++++     +     G + R
Sbjct: 76  SALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEVEKLLEQPNPVTVRGIRDR 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              E +  +GLR S+     ++ +      ++   K      V +    +  +       
Sbjct: 136 AMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNKTSVFWVERYISRS 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N   +K++   F       A +AG+ K    H +R   AT   + 
Sbjct: 196 RNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   +   + YT 
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279


>gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
 gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b]
 gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D]
 gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D]
 gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B]
 gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G]
          Length = 296

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           + +Y + A     L+ N+ +S+     +             ++    I S +   +    
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  +    +    +
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 124

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231
               G + R   E L  +G+R S+        +   +                 +    +
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            I         K L  +   ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 298

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I++Y + S     L+ N+  +++    + +    +     +    +      +   
Sbjct: 4   LAEQINDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++ +   
Sbjct: 64  DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 123

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E L  +G+R S++    +  +  N+       K      + +  
Sbjct: 124 QPDLTTDLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSA 183

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             +  +      ++             F+N+   ++         K    +AG+  + + 
Sbjct: 184 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 244 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280


>gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 294

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130
           LI E+         LA N+  S+     Q  +  G+   D   ++   I + +   +   
Sbjct: 4   LIHEFINYLSVERGLATNTLESYGRDLRQYYQYLGEDQVDLDAVSRSTIINYLMYLQKQG 63

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              ++  + L +++  +++ VR++ +  +P  ++E PK +    R  T  ++++  +   
Sbjct: 64  KATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEVERLLAQPD 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L  +G+R S+     ++ +      I+          V L    +
Sbjct: 124 PSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKERIVPLGSLAI 183

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +                    F+N+   ++    F    K  A  A ++K  + H +R
Sbjct: 184 KWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARIDKEITPHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   + GA    +    G   +   + YT  
Sbjct: 244 HSFATHLLENGADLRSVQEMLGHADISTTQIYTHV 278


>gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
 gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271]
          Length = 302

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 28/281 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KH 128
              Y       + + N+  S+     +        G      I    +R+ +       +
Sbjct: 12  FERYL--LLDMNRSANTIQSYGRDLAKFQAYLTEQGIDKVEAIDEVTVRAFLAKLSQDAY 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + L+S++  F +  ++  +  NP   V RPK+     +  T  +++        
Sbjct: 70  AASSTSRMLSSLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALLQAPDT 129

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
               G + R  FE +  +GLR ++  +  ++ L     F     K      V L D  ++
Sbjct: 130 SSPHGLRDRAIFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKERLVPLIDEAIE 189

Query: 244 LLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            L                    +  F+    +                 AG+ ++   H 
Sbjct: 190 WLEAYLEQVRPSFLRLAGSASPQEVFLTERGKAFTRQGIWKNLNKYVALAGIKQTVSPHM 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  + + 
Sbjct: 250 LRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQR 290


>gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus]
          Length = 295

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ L                    F+N   + ++        K    KA + K  + H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKKLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  +
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVS 280


>gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
 gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9]
          Length = 297

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 23/282 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHT 129
           K  I  +  S      L+ N+  S+    + +     D     KI +  +         +
Sbjct: 6   KEWIDRFIDSLWLEEGLSKNTLNSYRLDLNSLNNFLKDSISILKIDSDQLNLWFMEISSS 65

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L ++R  + W ++Q  +  +PCL +   K      +  ++  +++  +   
Sbjct: 66  SKATTINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPKSISESQVEELLNAPD 125

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241
                G + +   E L  +G+R S+        +  +   ++    K      V + +  
Sbjct: 126 LKTASGLRDKAMLEILYATGMRVSELIAIKTNEISLDAGVVRVTMGKGSKDRLVPMGEES 185

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGV 289
              L                    F+N     M    F    K  A      +  S H +
Sbjct: 186 EFYLKKYLSEGRPLLEKDKKNSFVFLNRFGDCMTRQAFWQIIKKYAKYTSIKIPLSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 246 RHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVA-RERL 286


>gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 295

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y   +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99]
          Length = 295

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127
           + +  EY +       L+ N+  ++    +  +    +     +     + I+       
Sbjct: 2   EEIRDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLAEHKVANLNFVDRQMIQEWFGFLH 61

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SA    +F +++R   ++A+R+ Y + +P + +E PK   +     +  +++Q   
Sbjct: 62  DEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVLSIAEVEQLLM 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
              E    G + +   E L  +G+R S+     V+ +     F     K      V L +
Sbjct: 122 APDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINLMMGFVKVFGKGSKERIVPLGE 181

Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +  L           + +            + ++        K    KAG+    + H
Sbjct: 182 TVIDCLTHYIQNIRPQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVKAGIMKRLTPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 TLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTH 278


>gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 299

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 98/286 (34%), Gaps = 25/286 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY K       L+ N+  ++    ++            I     + I+  +      
Sbjct: 8   VIEEYLKFIQIEKGLSANTIGAYRRDLNKYKEYLVLKKINNIDFIDREIIQQCLGYLHDD 67

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R+ Y A +P + +E PK +         ED+       
Sbjct: 68  GHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVLALLETP 127

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R ++     V+ +   +  ++          + L +  
Sbjct: 128 DLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGSKERIIPLGETV 187

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  L                    F+N   + ++        K    KA + K  + H +
Sbjct: 188 IDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKANIKKKLTPHSL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           R   AT   + GA    +    G   +   + YT  +  +IR    
Sbjct: 248 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYN 293


>gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
 gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195]
          Length = 297

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           + +Y + A     L+ N+ +S+     +             ++    I S +   +    
Sbjct: 6   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 65

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  +    +    +
Sbjct: 66  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231
               G + R   E L  +G+R S+        +   +                 +    +
Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            I         K L  +   ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 290

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 96/286 (33%), Gaps = 20/286 (6%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           ++ L+  Y     H    + N+  ++     +          + I    +   V++    
Sbjct: 6   IEALLRTYEDYLVHVRRSSENTVKAYIKDIRRFFEYI-QKPPKDIVRSDVEKFVKALSKG 64

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T ++  ++++S++ +F +      V  NP   V  P+ + +     T ++++ 
Sbjct: 65  EITGGEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRKKIPSFLTMKEVKA 124

Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL 237
             + + E    + +     L + GLR S+ C   V+ +      I     K      V +
Sbjct: 125 MINTFDEEKELKYKTIISVLYFCGLRVSELCNLRVEDVSFYPPYIKVVMGKGNKDRLVPI 184

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            D  + LL       +      + +  +          K  A +AG+NK    H +R   
Sbjct: 185 SDSIIPLLEKYVERYKPKVYFIESRGKSIHPATVFRIVKRAAQRAGINKKIHPHTLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AT           +    G   +     Y   AD+ +      +++
Sbjct: 245 ATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEK--FDAVKKL 288


>gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
 gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976]
          Length = 297

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 98/285 (34%), Gaps = 24/285 (8%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
           +L  +I ++  +      L+ N+  S+    ++                   +       
Sbjct: 3   SLDPIIEQFLDTLWQEHGLSENTSASYRLDLERFSEWLPTPKAFLTLDHFDLQSFLGERL 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  +S+ + L+ +R  F++   + Y   +P L++  P++ T   +  ++E +     
Sbjct: 63  EQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLLD 122

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKT 229
             +       + +   E L  +GLR ++       +L      ++               
Sbjct: 123 CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKERLVPIGE 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                ++    + + + +  I  +  F +    +M    F    K  A  AG++    S 
Sbjct: 183 EASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGIDSEKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1]
 gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
 gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a]
          Length = 296

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           + +Y + A     L+ N+ +S+     +             ++    I S     +    
Sbjct: 5   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  +    +    +
Sbjct: 65  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 124

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231
               G + R   E L  +G+R S+        +   +                 +    +
Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            I         K L  +   ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278


>gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 297

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 6   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 65

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 66  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 125

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 126 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 186 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 246 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 292


>gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 295

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
            L+ ++         LA N+  S+ S   Q +      G    R +T   + + +   + 
Sbjct: 3   ELVDQFLYYLVVERGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQ 62

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
              +P++  Q L +++  + + +R+  V  +P   +E P++  +  +  T  ++     Q
Sbjct: 63  DGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQ 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            ++    G + +   E L  +GLR S+     V  +      ++   K      V +   
Sbjct: 123 PRTDTPAGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMGQV 182

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               +                    F+N+  ++++        K     A + K  + H 
Sbjct: 183 ACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 243 LRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKK 283


>gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
          Length = 302

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 24/274 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134
            Y ++     L  NS  S++    +        +    K+    I   +   +++  S  
Sbjct: 17  RYLRTE--RGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSNN 74

Query: 135 ---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
                ++S+R  F +    + + I+P L V  PK+ +   +  T  +++   +       
Sbjct: 75  SIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDISTT 134

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236
            G + R   E +  +G R S+ C   +  L +               I      +++ + 
Sbjct: 135 LGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYIS 194

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                 + + +        F+N+   +++        K  A KAG++K  S H +R   A
Sbjct: 195 KYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHSFA 254

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    +    G   +   + YT  + +
Sbjct: 255 TNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288


>gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
 gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196]
          Length = 303

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 31/296 (10%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----IT 115
               + P  L       + +      L+ N+  S+ S  +Q                 +T
Sbjct: 2   RVSERNPELLDEFCDALWLED----GLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTVT 57

Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +   +  R       S+  + L+S++  +++ +RQ  +  +P L+++ P+       
Sbjct: 58  HSDLLGFMTGRFSAGMKASTTSRELSSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPV 117

Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             T+ D++         +  G + R   E L  SGLR S+        +  ++  ++   
Sbjct: 118 SLTEADVEALLGAPDVTFPLGLRDRAMLEVLYASGLRVSELVSLESGQISLDMGVVRIMG 177

Query: 229 TG-TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKA 277
            G       L +  ++ +                    F+      M    F    K  A
Sbjct: 178 KGGKERLTPLGEEALEWMVRYIKEIRPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYA 237

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AG+    S HG+R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 238 RQAGITKPLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 292


>gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 294

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 90/280 (32%), Gaps = 23/280 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVES 125
             LI +Y         L+ N+R S+     Q  +          T              +
Sbjct: 2   DDLIQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRFIVLGFLQAQTT 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   SS  + ++++R  +++  R+  +  +P L ++ PK+        + E++++    
Sbjct: 62  AQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEIERLLKT 121

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
                  G + R   E L  +GLR S+     +  L  ++       K      + + D 
Sbjct: 122 PDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKGDKERIIPIGDV 181

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHG 288
            +  +                                      KA    AG++K  + H 
Sbjct: 182 AVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGIDKDVTPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R   AT+  + GA    +    G   +   + YT  + +
Sbjct: 242 LRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKK 281


>gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9]
 gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132]
 gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1]
 gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD
 gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD
 gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD
 gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD
 gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD
 gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD
 gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD
 gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus]
 gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL]
 gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1]
 gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781]
 gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763]
 gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719]
 gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635]
 gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299]
 gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115]
 gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300]
 gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224]
 gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948]
 gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937]
 gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3]
 gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30]
 gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102]
 gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765]
 gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117]
 gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981]
 gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           M809]
 gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754]
 gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819]
 gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796]
 gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8]
 gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21172]
          Length = 295

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 298

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 27/277 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--- 124
           L   I  Y +      LA N+  S++    Q        G   + +    H+ + +    
Sbjct: 5   LDEFI-IYLQDE--RRLAPNTVESYKKDLAQYADFLSSEGILAWEETQRVHVITYMNNLK 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++  + L S+R L+ + +R++ + ++P   VE PK +T+     T E+M     
Sbjct: 62  QLGRAPATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLG 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP- 238
             + G+    + +   E L  +G+R S+        +  ++  ++   TG     V +  
Sbjct: 122 VPNTGTSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGK 181

Query: 239 ----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +   + L       +  F+N+   +M    F    K  AT+AG++K  + 
Sbjct: 182 VATLWIQRYLNEAREALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 242 HTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYT 278


>gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 343

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 16/337 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            G + Y  R     + R+     P +  F   Y  A  G  P      S   KP ++ WL
Sbjct: 3   SGNVRYRVRVIGNPKQRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWL 62

Query: 75  ISEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +           +  +     +   ++I          I    +    +    TP
Sbjct: 63  VHSYFEYMEQRVKARLSSAKTLKKKRNLLARLIED--PDRIMIIPQPKLIEMQDKMASTP 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A  F+ S+ V+++WA+++ ++  NP   ++R  +K +G  PW   D+++F ++   GS
Sbjct: 121 AQADAFIESISVMYEWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGS 180

Query: 191 QPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFMKLL 245
           +P +A   LL++G R  D        + + + + +++          +T+ L       +
Sbjct: 181 KPFIAMSILLWTGCRIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAI 240

Query: 246 AMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
               +  ET+ +    +   +    S  FK     AG+ + SAHGVRK  A + A+ G +
Sbjct: 241 HSQAVIAETYIVARGNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCS 300

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +E+MA  G      +E YT+  +R +L  +   R+ 
Sbjct: 301 QYEIMAILGHSEAKTSEVYTRRVERWKLAQQAMDRLD 337


>gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
 gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1]
 gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429]
          Length = 302

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 24/274 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAI 134
            Y ++     L  NS  S++    +        +    K+    I   +   +++  S  
Sbjct: 17  RYLRTEQ--GLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSNN 74

Query: 135 ---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
                ++S+R  F +    + + I+P L V  PK+ +   +  T  +++   +       
Sbjct: 75  SIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDISTT 134

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236
            G + R   E +  +G R S+ C   +  L +               I      +++ + 
Sbjct: 135 LGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYIS 194

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                 + + +        F+N+   +++        K  A KAG++K  S H +R   A
Sbjct: 195 KYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHSFA 254

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T   + GA    +    G   +   + YT  + +
Sbjct: 255 TNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288


>gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
 gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335]
          Length = 297

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 25/274 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           + +Y + A     L+ N+ +S+     +             ++    I S     +    
Sbjct: 6   LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 65

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
             +S  + L+S+R  ++W  RQ  +  +P L ++ PK++       +  +    +    +
Sbjct: 66  AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGT 231
               G + R   E L  +G+R S+        +   +                 +    +
Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            I         K L  +   ++  F+N+   K+         K     AG+NK  + H +
Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   + GA    +    G   +   + YT
Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279


>gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
 gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175]
          Length = 294

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKH 128
           I  +  S     L+ N+  S+    ++  +   +    ++      T       ++  ++
Sbjct: 4   IHYFLDSIAVQGLSDNTVSSYRRDLEKFSQFLEEQKVIRLQNVDHTTMVLFLQKLKKDEY 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS  + ++ ++  F++ +++  +  +P   +  PK K +  +  + +++ +       
Sbjct: 64  AVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEVNRLLEVPDT 123

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G + +   E L  +G+R S+     +  L   +       K      + +      
Sbjct: 124 TTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKGNKQRIIPIGQEATN 183

Query: 244 LLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +                     F+N+         F    K     A + K  S H +R
Sbjct: 184 WIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQTAMITKEVSPHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +AGA    +    G   +   + YT   +  
Sbjct: 244 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER 282


>gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122]
 gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122]
          Length = 295

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETL 123

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
 gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1]
          Length = 312

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 107/320 (33%), Gaps = 37/320 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
               P++    +   +P      I+E+R++     L+  +R ++      +   +     
Sbjct: 5   RAIQPRQPKALAVDDEP----AYITEFRQAMLARGLSTRTRNAYVRDLK-LCETTHSKAL 59

Query: 112 ---RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +      + ++ +  TP +  + L+S+R  + W V  E    NPC  ++ PK   
Sbjct: 60  TLWSDMDVMQCLTALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGR 119

Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS- 223
              +  ++ D++   S        G + +   E L   GLR S+     ++ +  N    
Sbjct: 120 SLPKDLSENDVESLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWL 179

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270
             T K      V L +     L                    +  F+      M    F 
Sbjct: 180 QITGKGNKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFW 239

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A +AG+  + S H +R   AT   + GA    +    G   +   + YT     
Sbjct: 240 YMIKKYAKQAGIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHV--- 296

Query: 329 IRLGIKNSRRISSVVDSDDP 348
                  + R+  + ++  P
Sbjct: 297 ------ATARLQQLHEAHHP 310


>gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
 gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120]
          Length = 297

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVE 124
            LI ++         L+ N+  +++      +          D   +    I    +   
Sbjct: 3   DLIEDFLHFLIVERGLSANTIKAYQRDLHYFVSYMETSKNLTDPNILERSDIVGFMAFAR 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               +  S  +++ S+R  F + +    ++ +P + +E PK+     +    +D+++   
Sbjct: 63  QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS 122

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV---- 235
              +    G + +   E L  +GLR ++  R  +  L  +  F     K      +    
Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182

Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +  +     L       +  F+N+  Q +    F    K  A ++G+ K  + 
Sbjct: 183 TATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 281


>gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999]
          Length = 303

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 106/301 (35%), Gaps = 33/301 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
             ++  + +  +    L+ N+  ++++   Q+ R        F    IT   IR+ +  R
Sbjct: 10  AQVLDAFLEVLYLEKGLSDNTLSAYQTDLRQLCRFLTQQDAAFSLVDITDTDIRAYLSHR 69

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +  S  + L+S++   K+ + ++    +P   ++ PK         T+  ++   
Sbjct: 70  QANNVSARSTARALSSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQVESLL 129

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
           +        G + +   E L  +GLR ++     +  +      ++          V L 
Sbjct: 130 AAPDTALAVGQRDKAMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLVPLG 189

Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           +  ++ L +                 F +    +M    F    K  A  AG+  + S H
Sbjct: 190 EPAIEALTLFLQQGRHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHLSPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA    +    G   +   + YT  A           R++ +++S  
Sbjct: 250 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASE---------RLTHIIESHH 300

Query: 348 P 348
           P
Sbjct: 301 P 301


>gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
 gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112]
          Length = 301

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124
           L+  I +Y + S     L+ N+  ++    ++ +                      +   
Sbjct: 6   LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++E++ +   
Sbjct: 66  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLE 125

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E L  +G+R S+     +Q +  ++  I+   K      + +  
Sbjct: 126 QPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISP 185

Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +                   E  F+NN   K+         K     AG+  + +
Sbjct: 186 VALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDVT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
 gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN]
 gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US]
 gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1]
 gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05]
          Length = 301

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 25/290 (8%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120
           +   LK  I +Y + +     L+ N+  ++    ++      +                 
Sbjct: 2   EKINLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAFL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +         SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M 
Sbjct: 62  ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +     +     G + R   E L  +G+R S+     +Q L +++  ++   K      +
Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLI 181

Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            +    +  +                   E  F+NN  +K+         K     A + 
Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + + H +R   AT   + GA    +    G   +   + YT  + +  L
Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQIL 291


>gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 303

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L+  I +Y + +     L+ N+  ++    ++ +          +           +   
Sbjct: 8   LQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFIEKEGMPSWPTEASDVDAFLARQR 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++SMR  ++W  RQ    +NP L ++ PK++       T+E++ +   
Sbjct: 68  DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLLE 127

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                   G + R   E L  +G+R S+     +Q L +++  ++          + +  
Sbjct: 128 QPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPISP 187

Query: 240 GFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  +                   E  F+N+  + +         K     AG+  + +
Sbjct: 188 VALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQMIKKYCQMAGIVKDVT 247

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 248 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 285


>gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
 gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC
 gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B]
          Length = 283

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 101/283 (35%), Gaps = 21/283 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
            + S+Y         + N+  +++    + +   G      I  K +   +++       
Sbjct: 6   EMFSDYLAHV--RRHSENTLKAYKKDVRKFLTYVG-KQINNIERKDVEEFLKALSKGDIT 62

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +P   +  ++++S+   F +      +  NP   ++ P+ + +     T++++     
Sbjct: 63  GESPRETTISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIG 122

Query: 185 FWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDG 240
            ++E    + + A   L Y+GLR S+ C      +      ++    K      V LPD 
Sbjct: 123 AFNEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPDK 182

Query: 241 FMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
            + +L         + F   N K+ ++ +    W K    +A + K    H +R   AT 
Sbjct: 183 VIPILKKYIDLENPKIFVFENGKKHVHPSTVFRWLKEGVKRANIKKDVHPHTLRHSYATH 242

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               G     +    G   +     Y   AD+ +      +++
Sbjct: 243 LIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 283


>gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19]
 gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++H+   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 25/286 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
              +  +         L+ N+  ++     + +      G     +++   + + + + K
Sbjct: 2   DQYLDLFLNYLVVEKGLSANTLDAYGRDLARYLEFLSVKGVTGLEQVSPPMVVAFLSALK 61

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SA    + L S+R+  ++ + +     NP   V  PK   +  +  T ++++   S
Sbjct: 62  ERGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVESLLS 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                     + +   E L  +GLR S+     +Q LQ ++  +           V L D
Sbjct: 122 APGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIVPLGD 181

Query: 240 GFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
              + +                    F+N     +    F    K +A +AG+NK  + H
Sbjct: 182 AAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKNITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   D GA    + A  G   +   + YT    R R+ +
Sbjct: 242 TLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVT-RERMKV 286


>gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I   +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLILECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++++   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1]
 gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1]
          Length = 301

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 25/290 (8%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120
           +   LK  I +Y + +     L+ N+  ++    ++      +                 
Sbjct: 2   EKNNLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFRTFVENEGMASWPTEASDVDAFL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +         SS  + ++SMR  ++W  RQ    +NP L ++ PK++       ++ +M 
Sbjct: 62  ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +     +     G + R   E L  +G+R S+     +Q L +N+  ++   K      +
Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLI 181

Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            +    +  +                   E  F+NN  +K+         K     A + 
Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + + H +R   AT   + GA    +    G   +   + YT  + +  L
Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQIL 291


>gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
 gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127
           I  + +       LA ++  S+ S  +         G  D+ +   +HI    + ++   
Sbjct: 5   IERFIRYLAIEKGLAPSTLGSYRSDLEDFSDFLQRTGCGDWPETGRRHIVAYLAHLQKLG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             P++  + + S+R  +++  R+  + ++P   ++ PK      R    E++++  +   
Sbjct: 65  RAPATVSRHMASLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEVERLLAAPE 124

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E L  +G+R S+     V  +  N+  +K          V L    +
Sbjct: 125 GLTPMALRDRAMLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSKERIVPLGSAAL 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + +                    F+N+  +++    F    K  A  AG+ K  + H +R
Sbjct: 185 EAVHAYLTRGRAGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT      
Sbjct: 245 HSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTR 283


>gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
 gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            I  + +S      L+ ++  ++ S               ++T       +       SR
Sbjct: 18  AIQRFVESLWVEEGLSPHTLKAYGSDLRLFAAWLATNRCAELTALTGEDIEAYLGWRHSR 77

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K    ++ + L+S+R    + +R+  +  +PC  +  PK         T+ +++   +  
Sbjct: 78  KSKSRTSARVLSSIRHFCAYRLRRGEITGDPCALIAPPKLGRFLPDTLTESEVEALLAAP 137

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
              +    + R   E L  +GLR S+        +      ++          V + +  
Sbjct: 138 DVDTPLGFRDRAMLEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKDRLVPVGEEA 197

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           +  L                 +  F+ +    M    F    K  A +AG+    S H +
Sbjct: 198 LDWLERYLDKVRPVTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGISKPLSPHTL 257

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 258 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQER 297


>gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11]
 gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46]
          Length = 295

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           +I EY +       L+ N+  ++     +      +     I     + I+  +      
Sbjct: 4   IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    +F++++R   ++A+R++Y A +P + ++ PK   +       +++       
Sbjct: 64  GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++H+   +  ++          V L D  
Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDTV 183

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L                    F+N   + ++        K    KA + K+   H +
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  +  +IR     
Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290


>gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 295

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 24/280 (8%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRKHTP 130
           +    H    L+ N+  ++     Q        G  D   +   HI +     +     P
Sbjct: 8   FLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQGVRDLNDLQASHITAYLLAQKRLGRRP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
           ++  + L+++R   K+   +  V  NP      PK+     R    +++ +  +      
Sbjct: 68  ATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLLTAPDTAN 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITV 235
             G + R   E L  SGLR S++    V  L      ++    G               V
Sbjct: 128 PMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVVPVGGEAVRLV 187

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           +      + L +        F+N   Q +         K  A +AG+ K  + H +R   
Sbjct: 188 DEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKEITPHTLRHSF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   + GA    +    G   +   + YT    R    +
Sbjct: 248 ATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAV 287


>gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 91/283 (32%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH 128
            LI EY          + N+  ++     +   +I++ G  +  +I+   +   +   K 
Sbjct: 4   QLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKR 63

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA    + L ++R  +K+ +R++ +  NP   +E  K         + E+M Q  S 
Sbjct: 64  KGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQ 123

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
               +    +     E +  +GLR S+        +   +   +   K      V +   
Sbjct: 124 PGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQV 183

Query: 241 FMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHG 288
             + +           I   +            M    F    +  A KAG+      H 
Sbjct: 184 AYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            R   A+   + GA    +    G   +   + YT    R  L
Sbjct: 244 FRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVT-REHL 285


>gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-66c26]
 gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium
           difficile CIP 107932]
 gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium
           difficile ATCC 43255]
 gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-76w55]
 gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-97b34]
 gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium
           difficile QCD-37x79]
 gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium
           difficile CD196]
 gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
 gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family protein [Clostridium difficile QCD-32g58]
 gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile CD196]
 gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium difficile R20291]
          Length = 376

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 114/360 (31%), Gaps = 45/360 (12%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF  G   G+R ++     +T   A  +                +   +L 
Sbjct: 6   RKRSNKWYYYFDLGIVEGKRKKVERVGGNTKKEAEKALREALNEYENSGIVFEESNISLS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + K     +   N++ S+  +    I  K G +  + +T   +++ +  +     
Sbjct: 66  DYLDFWYKEYVLLNCKYNTQESYRINIEKHIKPKLGAYKVKALTPAILQNFINKKYKEDY 125

Query: 132 SAIQFLTSMRVLFK---------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           S    L  ++ +           +   +E       +   + K +T  ++  T E+  Q 
Sbjct: 126 SQN-TLQVLKAILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQI 184

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
            + + + S  R+      ++G+R  +       ++  +  +I  + T             
Sbjct: 185 LNIFPQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQ 244

Query: 230 ----GTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI 271
                +  T+   D  +K L                     +      + Q++N      
Sbjct: 245 PKTESSCRTIFTGDTLIKALKEHKLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDT 304

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             +        +   H +R   AT+  + GA   ++    G   +     TY+   D+++
Sbjct: 305 IVRQIRVALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMK 364


>gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 297

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +    G   
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233
            +       + +   E L  +GLR S+     + +L      ++                
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + + + +  +  +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD
 gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis]
 gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 313

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           +I ++  S      L+ N+  ++      + +              +      +      
Sbjct: 22  IIEQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTLDLHAFLATRLDEG 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +SA + L+++R  F++  R++    +P   +  PK      +  +++ ++   S   
Sbjct: 82  YKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQVENLLSAPC 141

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 142 IDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAI 201

Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L           +              QKM    F    K  A  AG++    S H +
Sbjct: 202 YWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDSEKLSPHVL 261

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 262 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 301


>gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8]
          Length = 301

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDY-RKITTKHIRSGVESR 126
           +   +S++ +       L+ N+  ++E    +  R     + D   +I T  +R  + S 
Sbjct: 7   IDDYLSDFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQNMDLLSQIDTDLVRLFIASL 66

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               +  S+A + L+S+R  F + + +  V+ NP   +E PK+        +  +++   
Sbjct: 67  NKAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAEVEAIL 126

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP 238
           +  +  +    + R  FE L  +GLR S+     +  L  +  F     K      V L 
Sbjct: 127 AAPNTDTKFGIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERMVPLG 186

Query: 239 DGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           +  +  +          ++              +               + AG+    S 
Sbjct: 187 EEAVFWIEKYLDQVRDGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSLAGIQKKVSP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA    +    G + +   + YT  +
Sbjct: 247 HVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHIS 286


>gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD
 gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80]
 gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52]
 gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3]
 gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51]
 gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457]
 gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395]
 gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2]
 gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226]
 gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2]
 gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395]
 gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)]
 gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9]
 gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21]
 gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33]
 gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286]
 gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236]
 gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10]
 gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101]
 gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27]
 gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1]
 gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93]
 gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385]
 gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757]
 gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4]
          Length = 302

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +  +   LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
 gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri
           ATCC 11577]
          Length = 295

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131
           +++Y         L+ N+  S++    + I        D  K+    I + +E+ +    
Sbjct: 5   LADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           S     + ++S+R  F++  +   V  +P L V+ PK+        +  ++ +  S  + 
Sbjct: 65  SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L   +       K      + + D  + 
Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184

Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +                  +  F+N   +++         K     AG+ +  + H +R
Sbjct: 185 WITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  +
Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280


>gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
 gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus
           gammatolerans EJ3]
          Length = 283

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 18/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I E+         + N+   +  Y  + +   G  D+R        + +    ++  S 
Sbjct: 8   AIEEFATYLDLEGKSPNTIRMYTYYVRRYLEHGGGLDFRS--ALRFLARLRREGYSNRSL 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
              + ++R  F++              ++ P+      +  T+ED+++  S       + 
Sbjct: 66  NLVVQALRAYFRFEG-----LDEEAEKLKPPRVPKSLPKALTQEDVRKLLSVIPLTRRRD 120

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           RL    L  +GLR S+ C    + +     I +++  K      V +P    + +     
Sbjct: 121 RLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGGKGAKDRVVPIPPALTEEIKAYLS 180

Query: 251 GKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            ++              K +++             KAGV  + H +R   AT   + G  
Sbjct: 181 ERDDDSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240

Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345
              +    G   +   + YTK   + ++   + ++ + S+++ 
Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLMEE 283


>gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70]
 gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70]
          Length = 299

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SGVESRKHTPSSAIQFL 137
            +LA N+ IS+E    +             +  +T  HI      ++ + ++P +  + +
Sbjct: 17  RNLAKNTIISYERDLKKYAHYLRHVEQIQSWNDVTRLHIMQFLKFLKEKGNSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++         +    + +
Sbjct: 77  ASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGVRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDG 240
              E L  +G+R S+     +  +   +  ++    G               + V L   
Sbjct: 137 AMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKKERIVPVGSMALNALKVYLETA 196

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
             KL+       +  F+N+  +++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287


>gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
 gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus
           sibiricus MM 739]
          Length = 278

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 99/281 (35%), Gaps = 18/281 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I E++        +  +   +  Y ++ ++   + +YR        + ++   ++  S  
Sbjct: 5   IEEFKTYLELEGKSPQTVRMYTYYVERFLKDVENPNYRS--ALRFLAKLKKEGYSNKSLN 62

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193
             + +++  F++              ++ PK      +  T+ED+++  +       + R
Sbjct: 63  LVVQALKSYFRFEG-----LDEDAEKLKSPKVPRSLPKSLTREDVKRLLNAVPPTRKRDR 117

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT--- 248
           L    L  +GLR S+ C   ++ +  N   +  +         V L    +K +      
Sbjct: 118 LIILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKYLET 177

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                           K K++        K    KA V+ + H +R   AT   + G   
Sbjct: 178 RKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERGVDI 237

Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344
             +    G  ++   + YTK   + ++   + ++ I  +++
Sbjct: 238 RVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKAKLIDELIE 278


>gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
 gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82]
 gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q              ++ I   +        +P
Sbjct: 20  FLQGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNSEDIADVLFELTKQGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  FK+   Q+  + NP  + + PK      +  ++ D++         +
Sbjct: 80  RSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKDLSELDVEHLLHAPDINT 139

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R   E L   GLR ++     ++ +      ++          V L    ++ +
Sbjct: 140 ALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGKGNKERLVPLGQVAIEWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +AG+    S H +R   A
Sbjct: 200 EKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           T   + GA    +    G   +   + YT  A      +  + 
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAH 302


>gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
 gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126
            LI ++  +     +LA N+  S+      +           +  + I      +     
Sbjct: 5   DLIEQFLDALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAIDLRAFLAQRLEG 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L++MR LF++  R++    +P   +  PK      +  ++  +++     
Sbjct: 65  GYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQSP 124

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR ++     +  +      ++   K      V + +  
Sbjct: 125 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKERLVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  AT AG++    S H 
Sbjct: 185 VHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
 gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587]
          Length = 302

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +  +   LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 301

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I++Y + S     L+ N+  +++    + +    +     +    +      +   
Sbjct: 7   LAEQINDYLRYSQIERGLSPNTIAAYKQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++ +   
Sbjct: 67  DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E L  +G+R S++    +  +  ++       K      + +  
Sbjct: 127 QPDLTTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSA 186

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             +  +      ++             F+N+   ++         K    +AG+  + + 
Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 397

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 101/351 (28%), Gaps = 20/351 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYINSPR--- 65
                G   Y  +   G R R           +    A    L G               
Sbjct: 34  RIMPSGVRTYQVQYLKGGRTRRAAIGRHGVLTAEQARAKAKDLLGKVAMGGNPVEEISIH 93

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           ++ +T+  L   + +         ++   ++   +  I    G F    +  K I +   
Sbjct: 94  RRASTVGALCDRFLEVHVLERCKPSTAAEYKRGLNIFIKPALGAFKVVDVKRKDIAAIHH 153

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K TP  A + L  +  +F  A                PK +      +  +   Q   
Sbjct: 154 KMKETPYQANRVLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRELKREAFLSQSELQRLG 213

Query: 185 FW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                     SE      AF  L+ +G R  +      ++L      +   KTG      
Sbjct: 214 ATLAACELDGSESPYIVAAFRLLILTGCRLGEIQTLKWEYLTAKRMELPDTKTGARRIPL 273

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
                  L A+  +    + +    +  + T     ++    +AG+  +  H +R   A+
Sbjct: 274 PKAARDVLAALPRVVGNPYVVCGAVEGRHITDLQHPWRRVRERAGLPHTRIHDLRHTYAS 333

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVD 344
            +  +G     +    G   +     Y   AD   ++   +N+  + S + 
Sbjct: 334 NAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSLQSALG 384


>gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
 gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2]
          Length = 296

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHTPS---SAIQFLT 138
            +L+ ++  S+      ++             +   H+   +   K +     +  + + 
Sbjct: 16  RALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGRKTSTVSRHIA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           S+R  F +     Y+ +NP + +E PK++ +     + E+              G + + 
Sbjct: 76  SIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVTAAGKRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R S+     V  + + +  I+          +         L        
Sbjct: 136 MLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAALDDYLQNGR 195

Query: 254 TF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                        F+N    +M    F    K  A +AG+    + H +R   A    + 
Sbjct: 196 AELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRHSFAAHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YTK +   
Sbjct: 256 GADLRAVQELLGHADISTTQRYTKVSKVK 284


>gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
 gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1]
          Length = 299

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 92/271 (33%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    +               D  ++        ++ +  +P +  + +
Sbjct: 17  RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++         +    + +
Sbjct: 77  ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          V +    +  L       
Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPIGSMALDALKAYLETA 196

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+   ++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287


>gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 297

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 97/270 (35%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++      G     ++   HI   ++  K    SA    + +
Sbjct: 16  KGLANNTIVSYERDLKNYLKFIVKSEGLASLNEVQRVHIVQFLKKLKEQGKSAKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++    +P + +E P+++    +  +  +++      S+ S    + +
Sbjct: 76  ASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETLLESPSDSSHYSLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          + +     + +    +  
Sbjct: 136 AMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKERIIPIGKTASEAIERYLLHG 195

Query: 253 ETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              F+           N+  +++    F    K  A  AG+ K  + H +R   AT   +
Sbjct: 196 RPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G   +   + YT      
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285


>gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 299

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 92/271 (33%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    +               D  ++        ++ +  +P +  + +
Sbjct: 17  RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++    +P + +E P+ +    +  + E+++         +    + +
Sbjct: 77  ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          V +    +  L       
Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPVGSMALDALKAYLETA 196

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+   ++    F    K  A +A + K  + H +R   AT   
Sbjct: 197 RPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTHVTKTR 287


>gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
 gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685]
          Length = 299

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR--- 126
            LI ++  +     +LA N+  S+      +       D   +T     +++    R   
Sbjct: 7   ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTASPGDLQNFFAQRVDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L+++R  +++  R+     +P   +  PK      +  ++  +       
Sbjct: 67  GYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQVDALLQAP 126

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR S+    G + +      ++          V L +  
Sbjct: 127 AIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A  AG++    S H 
Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDTQRLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
 gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16]
          Length = 300

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTS 139
             L+ N+  S++   +Q I               +      +         S+  + +T+
Sbjct: 20  RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKTSTISRGITT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +        G + R  
Sbjct: 80  LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRAI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251
            E L  +G+R S+        L  ++  I+   K      V + D  +  L         
Sbjct: 140 LELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVRD 199

Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+NN   ++         K  +  A ++K  + H +R   AT   + 
Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLEN 259

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282


>gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus
           hilgardii ATCC 8290]
          Length = 295

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 95/276 (34%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131
           +++Y         L+ N+   ++    + I        D  K+    I + +E+ +    
Sbjct: 5   LADYLHFLRVERGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           S     + ++S+R  F++  +   V  +P L V+ PK+        +  ++ +  S  + 
Sbjct: 65  SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L   +       K      + + D  + 
Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184

Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +                  +  F+N   +++         K     AG+ +  + H +R
Sbjct: 185 WITQYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  +
Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280


>gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 385

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 120/377 (31%), Gaps = 52/377 (13%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF   K  G+R ++     +T   A  +     +          +   ++ 
Sbjct: 6   RKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNISVS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                +       +   ++++S++      +    G +  +KIT+  ++  +  +     
Sbjct: 66  DYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELINLKYRNGF 125

Query: 132 SAI---QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQ 181
           S          +   FK+      ++  NP   V+ PK  T+ I      +  T ED   
Sbjct: 126 SKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLEDYNN 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------------- 225
               +  GS   +  +    +GLR ++        +     +++                
Sbjct: 186 ILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEFKKWVFG 245

Query: 226 -TQKTGTIITVELPDGFMKLLAMTP----------------IGKETFFINNDKQKMNATQ 268
             +   +  T+++ +  + LL                       +   +  + + +    
Sbjct: 246 SPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGELLTTDS 305

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326
                K    + G++   H +R   AT+  +AGA   ++    G   +      Y+    
Sbjct: 306 LKYLSKVVNYELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTK 365

Query: 327 ----DRIRLGIKNSRRI 339
               D +RL  +  +++
Sbjct: 366 KMSQDSVRLFEEAIKKL 382


>gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 295

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131
           +++Y         L+ N+  S++    + I        D  K+    I + +E+ +    
Sbjct: 5   LADYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKK 64

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           S     + ++S+R  F++  +   V  +P L V+ PK+        +  ++ +  S  + 
Sbjct: 65  SRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNV 124

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L   +       K      + + D  + 
Sbjct: 125 SKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAID 184

Query: 244 LLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +                  +  F+N   +++         K     AG+ +  + H +R
Sbjct: 185 WITKYLKTTRIDLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  +
Sbjct: 245 HSFATHLLENGADLRIVQELLGHADISTTQIYTHIS 280


>gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
 gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7]
          Length = 296

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 101/280 (36%), Gaps = 25/280 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK--- 127
           + EY +       L+ N+  S++    Q +    +    +   I    + S ++  K   
Sbjct: 5   VEEYLRFLTIERGLSKNTIESYKRDISQYLTFIEENKLTEWVQIDRYVVLSFLQKLKENQ 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  + I+ ++ +R   ++  +++    +P L ++ PK+  +  +  + +++ +     +
Sbjct: 65  KSAGTIIRMISCLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPN 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+     +  L  ++       K      + L D  +
Sbjct: 125 TGETLGLRDRAMLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKERILPLGDMAI 184

Query: 243 KLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           + +                     F+N+  +K+         K    KAG+ K  + H +
Sbjct: 185 EWIEKYRRYSRSKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGIEKEVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT    + 
Sbjct: 245 RHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQR 284


>gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
 gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582]
          Length = 299

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      ++               +  +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEALDLQAFLAERVEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L++MR LF++  R++  A +P   +  PK      +  ++  +       
Sbjct: 67  GYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQIDALLQAP 126

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 127 CVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +   Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7]
 gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7]
          Length = 302

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125
           +K  +SEY++       L+ N+  S+           G+         I  +HI   ++ 
Sbjct: 3   IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              T   +S  + L S+R+L+ + V++  V  N   S   PKR  +     ++E+M +  
Sbjct: 63  LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                  +  S+ R   E L  +G+R S+     ++ L   + F     K      + + 
Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182

Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
               ++L          F          N   Q+++  +F    +       +    S H
Sbjct: 183 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 284


>gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group]
          Length = 752

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 101/337 (29%), Gaps = 38/337 (11%)

Query: 32  RIRLPYPHE-------STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAH 83
           R R+              F     +         +       +P  +   I   + +   
Sbjct: 415 RKRIEDTGSLIVGNTPEQFAEQIKAEFDVYKTVVQNQKLSLDQPA-IDAFIDALWLED-- 471

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK--HTPSSAIQ 135
              L+ N+  ++        +  G                H+++   +R      +SA +
Sbjct: 472 --GLSRNTLAAYRRDLVLYAQWLGQHASDTAGALDATAEHHLKAYFAARHAETRATSANR 529

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191
            LT +R  F+WA+R+  +A +P + ++  ++     +  +   ++            G +
Sbjct: 530 RLTVLRRYFQWALRERRIAADPTVRLQAARQPLRVPKTLSAAQVEALLQAPDTSTSLGLR 589

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT-- 248
            R   E +  SGLR ++       H   +   ++    G     V   +   + +     
Sbjct: 590 DRAMLELMYASGLRVTELVTLKTYHAGLSEGVLRVMGKGGKERLVPFGEVAAQWMQRYLD 649

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                       +  F+      M    F +  K  A  AG+    S H +R   AT   
Sbjct: 650 EARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITVPLSPHTLRHAFATHLL 709

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           + GA    +    G   +     YT  A      +  
Sbjct: 710 NHGADLRVVQLLLGHADISTTTIYTHVARERLKALHA 746


>gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN]
 gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN]
 gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
          Length = 300

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTS 139
             L+ N+  S++   +Q I               +      +         S+  + +T+
Sbjct: 20  RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKTSTISRGITT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +R  +++ +RQ  + ++P + ++ PK++       ++++++Q  +        G + R  
Sbjct: 80  LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRAI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251
            E L  +G+R S+        L  ++  I+   K      V + D  +  L         
Sbjct: 140 LELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVRD 199

Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+NN   ++         K  +  A ++K  + H +R   AT   + 
Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLEN 259

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282


>gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 308

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 103/286 (36%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ +++ S+ +   ++   S   G  D   ++T+ ++  +  R        S  + L+
Sbjct: 30  KGLSEHTQQSYRTDLSKLAVFSNNQGIKDIAVLSTEQLQDYLAYRHDKGLSTRSTQRALS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  F + + ++    +P  ++  PK         +++ ++   +          + R 
Sbjct: 90  AIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQVEDLLNAPQTDDPIECRDRS 149

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG-- 251
             E L  +GLR S+     +  +      ++          V L +  ++ L        
Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEEAIEWLLTYIKTAR 209

Query: 252 -------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  +++   QKM    F    K  A KAG+  + S H +R   AT   + GA
Sbjct: 210 PILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               +    G   +   + YT            + R+ +++ S  P
Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHV---------ATERLQTLIHSHHP 306


>gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
 gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426]
          Length = 302

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +  +   LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDTMWFERGLAENTVTSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQVEALLSAPD 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
 gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402]
          Length = 312

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125
           +K  +SEY++       L+ N+  S+           G+         I  +HI   ++ 
Sbjct: 13  IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 72

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              T   +S  + L S+R+L+ + V++  V  N   S   PKR  +     ++E+M +  
Sbjct: 73  LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIVLSQEEMIEIL 132

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                  +  S+ R   E L  +G+R S+     ++ L   + F     K      + + 
Sbjct: 133 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 192

Query: 239 DGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
               ++L          F          N   Q+++  +F    +       +    S H
Sbjct: 193 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 252

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT   + GA    +    G   +     YT  +++ 
Sbjct: 253 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 294


>gi|307692332|ref|ZP_07634569.1| tyrosine recombinase XerD subunit [Ruminococcaceae bacterium D16]
          Length = 293

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 94/277 (33%), Gaps = 23/277 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131
           L  EY  +      + N+  S+     Q        D +  ++  + +   V+       
Sbjct: 7   LFEEYLTTE--KKASANTVSSYLRDMHQFETAMAEQDLELTELAVQDVELYVDGLTRKGK 64

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184
           SA    + + S++  +   +    +  NP   V   K + +  +  T ++++ F      
Sbjct: 65  SAATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEVELFLEQPDC 124

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +G + R   E L  +G+R S+     V  L      +  +  G    + L    ++ 
Sbjct: 125 SDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKGRERIIPLYHTAIRA 184

Query: 245 LAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           L+                   F+N   ++M+   F    K    KAG+  + + H +R  
Sbjct: 185 LSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPHTLRHS 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A    + GA    +    G   +   + Y++   + 
Sbjct: 245 FAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK 281


>gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
 gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146]
          Length = 299

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
            LI ++  +     +LA N+  S+      +       D   +T  H       +     
Sbjct: 7   ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLACHDLTLLTAAHGDLQDFFAQRMDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L+++R  +++  R+     +P   +  PK      +  ++  +       
Sbjct: 67  GYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQVDALLQAP 126

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           S  +    + +   E L  +GLR S+      + +      ++          V L +  
Sbjct: 127 SIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A  AG++    S H 
Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDGDRLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae L20]
 gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 297

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +    G   
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233
            +       + +   E L  +GLR S+     + +L      ++                
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + + + +  +  +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
 gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39]
          Length = 302

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 105/280 (37%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +  +   LA N+ +S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDTMWFERGLAENTVVSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  ++  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 297

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  ++    +                    +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233
            +       + +   E L  +GLR S+     + +L      ++                
Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + + + +  +  +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429]
 gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429]
          Length = 282

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 104/279 (37%), Gaps = 21/279 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--------H 128
           +Y         + N+  ++     + +    +   ++I  K I + +++           
Sbjct: 9   DYLAHV--RRHSENTLKAYLKDVRKFLEYI-NKPIKEIERKDIETFLKALSKGEITENSP 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++  ++++S+   F +      ++ NP   ++ P+ + +     T+E++++    + E
Sbjct: 66  RETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEEIKKLIDVFDE 125

Query: 189 GS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
            +  + +LA   L Y+GLR S+ C      +      ++    K      V LPD  + L
Sbjct: 126 ETEMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMGKGRKDRLVPLPDKVLPL 185

Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           L         + +   N+ + ++ +    W K    +A + K    H +R   AT     
Sbjct: 186 LQKYLELKNPKIYVFENEAKHVHPSTVFRWLKDGVKRAKIKKQVHPHTLRHSYATHLIRK 245

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G     +    G   +     Y   AD+ +      +++
Sbjct: 246 GVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 282


>gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
 gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1]
          Length = 305

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 108/276 (39%), Gaps = 23/276 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129
            ++++         L++N++IS+E    + +    +       +I  +H++  + +    
Sbjct: 8   YLNDFLAHLLIDRGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYER 67

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R   ++ + ++    NPC  +E PK K       + ++++   S +
Sbjct: 68  NLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSF 127

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +  +    + +   E +  SGLR S+  +  +  +  ++  ++          V + +  
Sbjct: 128 NTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVA 187

Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +LL +              +  F+N   + M    F    K +A +AG+ K  S H +R
Sbjct: 188 TELLQLYLDTARPNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + G     +    G   +   + YT  +
Sbjct: 248 HSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHIS 283


>gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
 gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera
           4Rx13]
          Length = 299

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI ++  +     +LA N+  S+      +              + +  +   +   +
Sbjct: 6   SALIEQFLDALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQALDLQAFLAERVA 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +      
Sbjct: 66  GGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQVDALLQA 125

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEE 185

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  Q+M    F    K  A  AG++    S H
Sbjct: 186 AVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGIDSERLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
 gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402]
          Length = 302

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 25/284 (8%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV 123
            TTL     +Y     +    A  +  S++   D   +   +        ++   +R  +
Sbjct: 2   KTTLDKYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYL 61

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
                   + ++    L+++R  F + +++E +  NP L +E  K           E++ 
Sbjct: 62  TKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEIL 121

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235
                 ++    G + +   E +  SGLRCS+     + ++  N        K      V
Sbjct: 122 GLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYV 181

Query: 236 ELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG--V 282
              D   + L                     F+N     +                    
Sbjct: 182 PFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTK 241

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               H +R   AT   +AGA    +    G + +   + YT  +
Sbjct: 242 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS 285


>gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
 gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c]
          Length = 301

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 98/300 (32%), Gaps = 33/300 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR- 126
            +I ++  +      L+ N+  ++ S   +            +   I T+ I   +  R 
Sbjct: 9   EIIEQFLDTIWLEKGLSENTLDAYRSDLTKFSDFLRAQSSVVNLLDIQTEDINQYMAERF 68

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S+ + L+S+R    + +       +P   ++ PK      +  +++ +    +
Sbjct: 69  DNGLSERSSARCLSSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLN 128

Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                     + +   E L  +GLR ++     V  L  +   ++          V L +
Sbjct: 129 APQTDDPIQLRDKAMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKERLVPLGE 188

Query: 240 GFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +  L                +  F +N    M    F    K  AT+A +  + S H 
Sbjct: 189 EALDWLTTYMKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITSDLSPHT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G   +   + YT            + R+  +V +  P
Sbjct: 249 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLQELVAAHHP 299


>gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium
           bavaricum]
          Length = 324

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 113/326 (34%), Gaps = 14/326 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +    ++Y          L    +      ++ AL     K + +   R    +L+  + 
Sbjct: 5   KRTNGVWYVEVKRNVVRSLQTRDDREARQRFV-ALQREAVKGKLVVLDRTPTMSLQEFVK 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHI---RSGVESRKHTPSS 132
            Y +     + A  +    E    ++    G +     I  K++    +   S K+ P++
Sbjct: 64  AYLEWCQ-SNRAGRTCERAELALRKLTEVVGKNKLIADIKKKNMDDYVAYCTSIKNKPTT 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  ++  F WAV +EY+  NP    ++ K +    R  ++  +Q   +   +    
Sbjct: 123 INIEIRHIKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQIQDVYTAIGDNKTY 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           RL F   +++G R ++        ++ +    +  KT     +    G   +L+    G 
Sbjct: 183 RLIFALYIHTGARRNEIQNIKWSDIKPDGIIFEKTKTYRSRKIPTSKGLKAILSEYDRGI 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
              F          +  S   K    KAG+ +   H +R   A++   AG     +    
Sbjct: 243 GQIFNI------TPSHISHVMKDYFKKAGIGHFKLHDLRHTFASLLVQAGIDLRTIQVLL 296

Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNS 336
           G  +      Y   + ++++  I + 
Sbjct: 297 GHTSYSTTLIYAHLSQNQLQDAIDHI 322


>gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 299

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 23/283 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITT-KHIRSGVESRK 127
           LI  +  +      L+ N+  S+ +  ++         G      +   +H  +    ++
Sbjct: 9   LIEPFLDALWLERGLSDNTVSSYRTDLEKFALWLDEQGGSLLLAGLDDIQHYLAWRVDQQ 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  +FL+++R  +++  R++  + +P + +E PK   +     ++ +++       
Sbjct: 69  FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQAPL 128

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+      +H+      ++          V + +  +
Sbjct: 129 VDEPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAV 188

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             L        T           F +   + M    F    K  A +AG+    S H +R
Sbjct: 189 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQGELSPHTLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT  A+     +
Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 291


>gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 308

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 31/286 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ +++ S+ +   ++   S   G  D   +TT+ ++  +  R        S  + L+
Sbjct: 30  KGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQLQDYLAYRHDKGLSTRSTQRALS 89

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  F + + ++    +P  ++  PK         +++ ++   +          + + 
Sbjct: 90  AIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLNAPLTDDPIECRDKS 149

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+     +  +      ++          V L +  ++ L        
Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEDAIEWLLTYIKTAR 209

Query: 254 TF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      F++   QKM    F    K  A KAG+  + S H +R   AT   + GA
Sbjct: 210 PILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               +    G   +   + YT            + R+ +++ S  P
Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHV---------ATERLQTLIHSHHP 306


>gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010]
 gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010]
          Length = 303

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 93/290 (32%), Gaps = 23/290 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHI 119
           S + +PT+    +  +  S      L+ N+  ++              D D    T   I
Sbjct: 2   SEQDEPTSTSRYLQPFLDSLWLEAGLSQNTVEAYRRDLLAFAAWLAKLDVDLAAATQHDI 61

Query: 120 RSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +     R           + L+++R  +++ +R++    +P   +E P+         T+
Sbjct: 62  QRYQSQRMREGRKVRSEARLLSTLRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTE 121

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
           +D++   +        G + R   E L  SGLR S+      + +      ++       
Sbjct: 122 QDVEDLLAQPDITDLLGLRDRTMLELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNK 181

Query: 232 IITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAG 281
              V L +  +  L                    F     + M    F    K  A +A 
Sbjct: 182 ERLVPLGEVALDWLQQYFYESRPGLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQ 241

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + K+   H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 242 IQKTLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKER 291


>gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
 gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92]
          Length = 306

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI  Y  +      L+ N+  S+     Q      D         ++  +   +    
Sbjct: 14  AQLIDIYLDAIWMEKGLSDNTLSSYRRDLVQFSVWLTDQGVIMKRCCRVDIQKYLAWRVK 73

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   SS  + L+ +R  +++ +R+E ++ +P L ++ PK+     +  T+ +++     
Sbjct: 74  ERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA 133

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    + R   E L  +GLR S+     +  +  N   ++    G     V L + 
Sbjct: 134 PDLSDPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGEE 193

Query: 241 FMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  +             +D           Q+M    F    K  A  AG++K+   H 
Sbjct: 194 AIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPHV 253

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 254 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR 294


>gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7]
 gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7]
          Length = 304

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 25/284 (8%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV 123
            TTL     +Y     +    A  +  S++   D   +   +        ++   +R  +
Sbjct: 4   KTTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYL 63

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
                   + ++    L+++R  F + +++E +  NP L +E  K           E++ 
Sbjct: 64  TKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEIL 123

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235
                 ++    G + +   E +  SGLRCS+     + ++  N        K      V
Sbjct: 124 GLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYV 183

Query: 236 ELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG--V 282
              D   + L                     F+N     +                    
Sbjct: 184 PFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTK 243

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               H +R   AT   +AGA    +    G + +   + YT  +
Sbjct: 244 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHIS 287


>gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
 gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909]
          Length = 305

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 108/276 (39%), Gaps = 23/276 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129
            ++++         L++N++IS+E    + +    +       +I  +H++  + +    
Sbjct: 8   YLNDFLAHLLIDRGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYER 67

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R   ++ + ++    NPC  +E PK K       + ++++   S +
Sbjct: 68  NLNTKSVARHLSAIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSF 127

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +  +    + +   E +  SGLR S+  +  +  +  ++  ++          V + +  
Sbjct: 128 NTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVA 187

Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +LL +              +  F+N   + M    F    K +A +AG+ K  S H +R
Sbjct: 188 TELLQLYLDTARPKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + G     +    G   +   + YT  +
Sbjct: 248 HSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHIS 283


>gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 301

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I++Y + S     L+ N+  ++     + +    +     +    +      +   
Sbjct: 7   LAEQINDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++ +   
Sbjct: 67  DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E L  +G+R S++    +  +  ++       K      + +  
Sbjct: 127 QPDLTTDLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSA 186

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             +  +      ++             F+N+   ++         K    +AG+  + + 
Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 91/289 (31%), Gaps = 25/289 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI----- 114
           I +   K   +   +S + K        + ++  ++      +     D     I     
Sbjct: 2   IKASDNKFMQIDKAVSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADF 61

Query: 115 -TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            T +   + +  +    S+  + +  ++  F +  ++ +   NP   ++ PK++ +  + 
Sbjct: 62  FTLRGFVAMLFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKV 121

Query: 174 WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQK 228
           +  + +             G +  L  E +  +G+R S+     +  +      I    K
Sbjct: 122 FNIDSIIALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGK 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKA 277
                 V + D  ++++      K                     ++         +   
Sbjct: 182 GKKERIVPIADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYL 241

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AG+    S H  R   AT   + GA    + +  G +++   + YT 
Sbjct: 242 KIAGLPMDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTH 290


>gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12]
 gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12]
          Length = 301

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 96/273 (35%), Gaps = 18/273 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I  Y     +  + + N+  S+        +   + D      +++R     +  + +  
Sbjct: 9   IENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKRNVRSYIQFIAQKNYKN 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
           S+ ++ + S+R  F++ +  E +  +  + +  PK + +  +  + +++ +  +  S   
Sbjct: 69  STFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSLDD 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245
             G + R   E L  +G+R S+      + +  N   I+          V + +  +K+L
Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVGEETLKIL 188

Query: 246 AMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +                FF+N    +++     +  K          S H +R   AT 
Sbjct: 189 QLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKDFNKKVSPHTLRHTFATH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + GA    +    G   +   + YT      
Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTSEQ 281


>gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB]
 gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 294

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 101/289 (34%), Gaps = 24/289 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR- 126
              +  +         L+ N+   +     +++   G      +  ++ + I S +ES  
Sbjct: 2   DRWLDLFLNHITVEKGLSPNTVAGYGGDLQEMLGYFGKHGVSSWEAVSREDIVSYLESVS 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + +  S  + L ++R  FK+  R   ++ +P   V  PK      +  T  ++    + 
Sbjct: 62  GRLSHRSKARRLAALRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGREVDALLAA 121

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
            + G+    + R   E L  +GLR S+     +  +      +  +        V + + 
Sbjct: 122 PAAGTPLGQRDRAMLELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPVPMGEP 181

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             + L +                  F+N    K+         K  A K+G+  N + H 
Sbjct: 182 AGEALQIYLRDGRRRLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQNLTPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    L A  G   +   + YT  A + RL   + +
Sbjct: 242 LRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVA-KKRLKEVHLK 289


>gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 296

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 91/278 (32%), Gaps = 20/278 (7%)

Query: 72  KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + L+ ++ +     + +  ++ +++E    Q +         ++        +     + 
Sbjct: 4   EELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVHEVDRLMAYDYLNMLYDSN 63

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + ++++R  +K+      +  NP   ++  ++          ++++       
Sbjct: 64  LSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSCD 123

Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           E   G + ++  E +   GLR S+     +  L     S++          +   +  + 
Sbjct: 124 ESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESLVP 183

Query: 244 LLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            L          F N             + +         + +   AG+      H +R 
Sbjct: 184 KLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHMLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   D GA+   +    G +++   + YT  + + 
Sbjct: 244 SFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK 281


>gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
 gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4]
          Length = 299

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 102/284 (35%), Gaps = 25/284 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L   + EY +       L+ N+  S++    Q    I +     + +I    + S ++  
Sbjct: 4   LNEDVEEYIRFLTIERGLSKNTIESYKRDIRQYLVFIEQIKVTKWDQIDRYTVLSFLQDL 63

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K    +  + I+ ++ +R   ++  +++    +P L ++ PK+  +  +  + +++ +  
Sbjct: 64  KEKEKSAGTIIRMISCLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEVDRLI 123

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
              +     G + R   E +  +GLR S+     +  L  ++       K      + L 
Sbjct: 124 ETPNTGETLGLRDRAMLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKERIIPLG 183

Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           D  +  +                     F+N+  +K+         K    KAG+ K  +
Sbjct: 184 DLAITWIEKYLRYSRTKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGIEKEVT 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT    + 
Sbjct: 244 PHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKR 287


>gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM
           5265]
          Length = 286

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 91/283 (32%), Gaps = 11/283 (3%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L++++  +      + ++  ++     Q           + T       +  +   P
Sbjct: 6   WAELLNQFLNTLEASGYSEHTLKAYYVDLKQYFMF--TTSLDQKTVDDYLMHLSRKGMAP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +S  +FL+S+R    +  +Q Y          +   +    +       + +        
Sbjct: 64  TSLNRFLSSLRKFCSFLKKQGYEMPIMELSGFKTGLKVPRVVLRDDISKLLELPENTPIE 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMT 248
            + +    FLL +G R S++    V+ +           K     TV +P   +KLL   
Sbjct: 124 LRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQVLGKGNKKRTVYIPSKALKLLKRY 183

Query: 249 PIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
                      F+N   Q +            + K G+      H +R   AT   + GA
Sbjct: 184 IEVFNLTEGPLFLNMQGQGLTDRGARYILHKISKKYGLRDLVHPHTLRHTFATNLLEEGA 243

Query: 303 TAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
              E+    G  ++   + YT  +   ++  I+  R+ +    
Sbjct: 244 NLREIQELLGHSSLRSTQIYTHVSPVMVKEAIEAMRKEAKNKP 286


>gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans
           568]
 gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568]
          Length = 299

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI ++  +     +LA N+  S+      +              + +  +   +    
Sbjct: 6   SALIEQFLDALWLERNLAENTLASYRLDLQALGAWLNQQNTSLLQAQALDLQAFLADRVE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R+   + +P   +  PK      +  ++  +      
Sbjct: 66  GGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQVDALLKA 125

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEE 185

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         + +N          N  Q+M    F    K  A  AG++    S H
Sbjct: 186 AVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
 gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724]
          Length = 300

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 102/276 (36%), Gaps = 19/276 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I  Y     +  + + N+  S+        +   + D      ++IR     +  + +  
Sbjct: 9   IENYINYLRFERNYSPNTLRSYLRDLLDFYKYCKEKDLDFTNKRNIRSYIQFIAQKGYKN 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
           S+ ++ + S+R  F++ +  E +  +  + +  PK + +  +  + +++++  +  S   
Sbjct: 69  STFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFLSIDEVRKLLNSPSLDN 128

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245
             G + R   E L  +G+R S+      + +  N   I+          V + +  +K+L
Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGEIRVFGKRAKERVVIVGEETLKIL 188

Query: 246 AMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +                FF+N    +++     +  K    +     S H +R   AT 
Sbjct: 189 QLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMIIKKYTKEFNKKISPHTLRHTFATH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
             + GA    +    G   +   + YT    D+IR 
Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRR 284


>gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
 gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina
           NK-01]
          Length = 313

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 99/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130
           LI  + ++      L+ +++ ++ S  +               I    I   +  R    
Sbjct: 23  LIERFLEAQWLEKGLSAHTQAAYRSDLEHFNAWLDARGLALQHIGRDAILDHLAWRLEQG 82

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             A    +FL+ +R  +++ +R+  ++ +P L VE P+      +  ++ D++       
Sbjct: 83  YQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADVEALLQAPD 142

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR S+     ++ +      ++          V L +  +
Sbjct: 143 LDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAI 202

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             +                    F +   ++M    F    K +A  AG++K  S H +R
Sbjct: 203 AWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGISKALSPHTLR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARL 302


>gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4]
 gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4]
          Length = 283

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 18/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I E+         + N+   +  Y  + + + G  D+R        + +    ++  S 
Sbjct: 8   VIEEFATYLDLEGKSPNTIRMYTYYVRRYLEQGGGLDFRS--ALRFLARLRREGYSNRSL 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192
              + ++R  F++              ++ PK      +  T E++++  S       + 
Sbjct: 66  NLVVQALRAYFRFEG-----LDEEAEKLKPPKVPKSLPKALTPEEVRKILSVIPLTRRRD 120

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           RL    L  +GLR S+ C      +     I +++  K      V +     + +     
Sbjct: 121 RLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGGKGAKDRVVPISPALAEEIRAYLR 180

Query: 251 GKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            ++              K +++             KAGV  + H +R   AT   + G  
Sbjct: 181 ERKDNSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240

Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345
              +    G   +   + YTK   + ++   + ++ + S+++ 
Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLMEE 283


>gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265]
 gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265]
          Length = 306

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 26/280 (9%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
              ++  +        + + N+R S+ +   + ++    G      I    I   ++   
Sbjct: 10  FGAVLENFLNYLLIERNFSPNTRDSYRNDLQRYLQAMQEGCGSLEAINPDSINRFLDELH 69

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T    SS  + ++++R L ++ +    +  NP  ++ +PK         T ++  +   
Sbjct: 70  KTGLEASSIARNVSAIRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRILQ 129

Query: 185 FW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        + +   E L  +G+R S+      Q+L      I+          V 
Sbjct: 130 APAQKVPPEKLYLRDQAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKERLVP 189

Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           +    +  L +              ++  F+N   +KM+        K  A  AG+ K+ 
Sbjct: 190 VGSSAVNSLTLYRQKLRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYAMLAGIPKTV 249

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H  R   AT   + GA    +    G  ++   + Y+ 
Sbjct: 250 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSH 289


>gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571]
 gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075]
 gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10]
 gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463]
          Length = 301

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 97/282 (34%), Gaps = 25/282 (8%)

Query: 67  KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120
           +   L+  I +Y + S     L+ N+  ++    ++ +                      
Sbjct: 2   EKNKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +         SS  + ++SMR  ++W  RQ    +NP L ++ PK++        ++++ 
Sbjct: 62  ARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIN 121

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
              +        G + R   E L  +G+R S+     +Q L  ++  ++   K      +
Sbjct: 122 DLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLI 181

Query: 236 ELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
            +    +  +                   E  F+N+  +++         K     AG+ 
Sbjct: 182 PISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGIT 241

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + + H +R   AT   + GA    +    G   +   + YT
Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
 gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602]
          Length = 319

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L  ++        +LA N+  S+      ++        D   ++ + ++  +  R    
Sbjct: 28  LTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGG 87

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R+     +P   +  PK      +  ++  +    +  S
Sbjct: 88  YKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPS 147

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  L      ++          V + +  +
Sbjct: 148 VDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAV 207

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 208 YWIENYFEHGRPWLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVL 267

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R++L  + 
Sbjct: 268 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 314


>gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
 gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046]
          Length = 305

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 99/291 (34%), Gaps = 19/291 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKI 114
           K+  + +P + PT L   +  ++      +++ ++R ++ S   Q          ++   
Sbjct: 4   KKPRVPAPVQIPTQLS-FLHGFKDYLIAQTVSPHTRNAYLSDLLQCSECSHVSMPEWSSD 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
               +   +  +  +P S  + L+++R  FK+   Q+  + NP    + PK      +  
Sbjct: 63  DVADVLLTLTKQGKSPRSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDL 122

Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           +++D+             G + R  FE L   GLR S+     +  +      ++     
Sbjct: 123 SEQDVDALIQAPDIETALGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKG 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKA 280
                V L    ++ +    I                      M+   F    K  A +A
Sbjct: 183 NKERLVPLGQIAVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQA 242

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 243 GIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293


>gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341]
 gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341]
          Length = 302

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 102/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           L+ ++  +      LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDTMWLERGLAENTVASYRNDLSKLLEWMEQHHYRLDFISFSGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + PSS  + L+++R LF++  R++  A +P   +  PK      +  ++  +    +   
Sbjct: 71  YKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQVDALLNAPD 130

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
             +    + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
 gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393]
          Length = 297

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           L+  +         L+ N+  S+      +     +      D   +  +        + 
Sbjct: 6   LLDLFLNELWIGKGLSPNTVQSYRLDLTALCDWLSERKLSLLDLDSVDLQTFLGERVEQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S  + L+++R LF++  +++Y   +P   +  PK  +   +  T++ +    +   
Sbjct: 66  YKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQS 125

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTI 232
                  + +   E L  +GLR ++        +  N              I        
Sbjct: 126 LEQPIELRDKAMLELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIVPMGEEAT 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             V+    F + + +     +  F +    +M    F    K  A  A ++    S H +
Sbjct: 186 HWVKQFMLFARPILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSNMLSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
 gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664]
          Length = 299

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           L   I +Y +       L+ N+  ++     + +            T+ +      +  +
Sbjct: 4   LNDQIEDYLRFGQIERGLSENTITAYRQDLTEFLNFLQQEKIDSWPTEAVEIDAFLARQK 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++S+R  ++W  RQ    +NP + ++ PK++       T+++M +  +
Sbjct: 64  DLNKASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLA 123

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
             +     G + R   E +  +G+R S+     ++ +  ++       K      V + +
Sbjct: 124 APNVEKKLGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSN 183

Query: 240 GFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
             +  LA                  E  F+NN    +         K     A +NK  +
Sbjct: 184 IALDWLAKYEKEVRESLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVT 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 244 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 281


>gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88]
 gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88]
          Length = 303

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 106/284 (37%), Gaps = 20/284 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR 126
            T   LI++Y        L+ N+  ++    ++ +    +   D   +    I + V+S 
Sbjct: 10  RTRDELINKYVSRLMDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQSL 69

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +    SS ++ + S+R  +K+  ++ Y+  +P ++ E PK K    +  T E++    
Sbjct: 70  QKSRKANSSIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEVDILL 129

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELP 238
           +  +     G + +   E +  +G++ ++     V  +   +  IK +        + + 
Sbjct: 130 NAPNISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIG 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSA--HG 288
              +  L      +    I N           +M    F    K  A  +G+ KS   + 
Sbjct: 190 AYAVNCLDDYLSVRPNINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   A      GA    +    G   +   + Y+  +++ ++ 
Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIA 293


>gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 301

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 99/277 (35%), Gaps = 24/277 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I++Y + S     L+ N+  ++     + +    +     +    +      +   
Sbjct: 7   LAEQINDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKER 66

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++   ++W VRQ+ +A++P   ++ PKR+       T+ ++ +   
Sbjct: 67  DLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLE 126

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                   G + R   E L  +G+R S++    +  +  ++       K      + +  
Sbjct: 127 QPDLTTDLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSA 186

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             +  +      ++             F+N+   ++         K    +AG+  + + 
Sbjct: 187 LALDWIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G   +   + YT
Sbjct: 247 HTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283


>gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
 gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3]
 gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US]
 gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1]
 gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153]
          Length = 300

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 95/263 (36%), Gaps = 24/263 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESRKHTPSSAIQFLTS 139
             L+ N+  S++   +Q +               +      +         S+  + +T+
Sbjct: 20  RGLSKNTVNSYQLDLNQFVEYLDKEKISDWPEDPLVIDSYLAKQRDEGKKTSTISRGITT 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ +RQ  + ++P + ++ PK++       +++++ +  +  +  +    + R  
Sbjct: 80  LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVSELLAQPNLNTATGLRDRAI 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------TQKTGTIITVELPDGFM 242
            E L  +G+R S+        L  ++  I+             T      +   L +   
Sbjct: 140 LELLYATGMRVSELINLKETDLHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRD 199

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L    +  +  F+NN   ++         K  +  A ++K  + H +R   AT   + 
Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLEN 259

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G   +   + YT
Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282


>gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 470

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 94/335 (28%), Gaps = 24/335 (7%)

Query: 14  ERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREYINSPR 65
             T  GK  YY +       +R+ +      T   A   A        +    +   S +
Sbjct: 32  RITPGGKKTYYVQYMVYKKIKRVAIGAHGIFTTERARNQATIMLGEIKAGADPQKEKSTK 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   ++ L   Y +         ++   +  Y    +I   GD   + +    +     
Sbjct: 92  RKELFVRDLAERYMEEHVIPHCKPSTAKGYRRYLDKHLIPFFGDMKIKDVQRSDVAEFHH 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S + TP  A   L  +  +F  A        +        K  ++    +  E+  +  S
Sbjct: 152 SLRRTPYEANHGLEIISKMFNLAEMWGLRDDHTNPRRHIKKYPSKARERYLSEEEVKRLS 211

Query: 185 FWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +  +             + LL +G R  +       ++   +  +K   + T     
Sbjct: 212 AVLDEIKQYPDENLAAVYCIQLLLLTGCRLGEIRSLKWDYVDRKMQVLKLPDSKTGAKYV 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV-NKSAHGV 289
                +  L           ++N           +       ++     AG+ +   H +
Sbjct: 272 YVGNTVMNLLDEVHAHPARPVDNPYVIWGLIEGSHLDNVQKPWRRFRKMAGIEDVRIHDL 331

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   A+ +   G +   +    G   V     Y  
Sbjct: 332 RHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAH 366


>gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 297

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 97/284 (34%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+ +++    +                    +        
Sbjct: 4   LDPIIEQFLDTLWQEHGLSENTSVAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L+ +R  F++   + Y   +P L++  P++     +  ++E +      
Sbjct: 64  LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII------- 233
            +       + +   E L  +GLR S+     + +L      ++                
Sbjct: 124 PNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + + + +  +  +  F +   Q+M    F    K  A  AG++    S H
Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           CECT 5713]
          Length = 297

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 110/281 (39%), Gaps = 25/281 (8%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129
           +Y         L+ N+  S+       +    + +    +++  + I + ++S K+    
Sbjct: 9   DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS ++ ++S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +  
Sbjct: 69  NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 128

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + R   E +  +GLR S+     ++ L   + +     K      V + D  +K 
Sbjct: 129 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 188

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +                    F+N     +         KA+  KAG+ K  + H +R  
Sbjct: 189 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   + GA    +    G   +   + YT  ++  +L  
Sbjct: 249 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 288


>gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
 gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12]
          Length = 296

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 91/275 (33%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHT 129
           + ++     +  +++  +  S+    +  I        + + +  +  +  + +   K+ 
Sbjct: 5   LEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKKYK 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             S  + ++S+R   K+ +R+ Y+  N    +  PK           ++++ F       
Sbjct: 65  IKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPDPL 124

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
              G +     E    +G+R S+     +Q++      ++          V L D  ++ 
Sbjct: 125 SPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAVES 184

Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +  F   + +        +++         KA +   G+ K  S H  R   A
Sbjct: 185 LKRYLSVRHLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHTFRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T     GA    +    G   +   + YT      
Sbjct: 245 THLLSNGADIRIVQELLGHSDIATTQIYTHIVSSK 279


>gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+R S+E   +Q +         D++ +    I S ++  + +    ++ I+ ++
Sbjct: 16  RGLSQNTRKSYERDLEQYLTFLTEQHIKDWQAVDRVLILSFLQQLQQSGKSSATIIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRL 194
           S+R   ++  ++ +   +P   ++ PK++ +     +    +  ++   +    G + R 
Sbjct: 76  SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLSEVERLIETPDTKEVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL--------- 244
             E +  +GLR S+     ++ L  ++     T K      V L D  ++          
Sbjct: 136 ILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLEEAR 195

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN  ++++        KA   KAG+ K  + H +R   AT   + 
Sbjct: 196 PFLTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT    + 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284


>gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.]
          Length = 298

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 97/296 (32%), Gaps = 30/296 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR 126
           +  L+ +Y         L+  +  S+ S     I   G    + I    T  I   + + 
Sbjct: 4   IDSLVDQYLNYLVVEKGLSKKTLESYGSDIATYIDFLGKKGIKDISEADTPTILMHIIAL 63

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +       S  + L ++R  +K+ VR++ +  +P   ++ PK         T+++++   
Sbjct: 64  REDGLKARSRARHLVTLRGFYKFLVREKLITTDPTRVIDLPKSGFYLPNVLTQDEVKSLL 123

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL- 237
           S        G +     E L  +GLR S+     +  +  +   ++          V + 
Sbjct: 124 SVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKERIVPIG 183

Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                         + L +        F+    + +    F    K  +T   + K+   
Sbjct: 184 TFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKITKTITP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           H +R   AT   + GA    +    G   +   + YT           + ++I S 
Sbjct: 244 HSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVV------RDHLKKIHSK 293


>gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
 gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109]
          Length = 296

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVDFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R+S+ S          +            I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 VWLDRYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
 gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 25/292 (8%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSG 122
            T   LI ++  +     +LA N+  S+      +                +  +   + 
Sbjct: 1   MTDSDLIEQFLDTLWIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEALDLQQFLAE 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                +  +S+ + L+++R LF++  R++  + +P   +  PK      +  ++  +++ 
Sbjct: 61  RVEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQVERL 120

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  +GLR S+     +  +      ++          V +
Sbjct: 121 LQAPSTEIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPM 180

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            +  +  +         +          F +N  QKM    F    K  A  AG++    
Sbjct: 181 GEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGIDSEKL 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           S H +R   AT   + GA    +    G   +   + YT  A +R+RL  + 
Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 292


>gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
 gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           salivarius ATCC 11741]
          Length = 290

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 109/277 (39%), Gaps = 24/277 (8%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129
           +Y         L+ N+  S+       +    + +    +++  + I + +++ K+    
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQAEKNNNKA 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS ++ ++S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +  
Sbjct: 62  NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTG 121

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + R   E +  +GLR S+     ++ L   + +     K      V + D  +K 
Sbjct: 122 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 181

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +                    F+N     +         KA+  KAG+ K  + H +R  
Sbjct: 182 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT   + GA    +    G   +   + YT  +++ 
Sbjct: 242 FATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ 278


>gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
 gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126
            LI ++  +     +LA N+  ++      ++            + +  +++ +  R   
Sbjct: 6   ALIEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQSG 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S  + L+++R  F+   R++    +P   +  PK      +  ++  +++     
Sbjct: 66  GYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAP 125

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 126 LVEQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKERLVPLGEEA 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +   Q+M    F    K  A  AG++    S H 
Sbjct: 186 VLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC
 gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 306

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 101/289 (34%), Gaps = 25/289 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127
           + ++         L  N+  ++ +  DQ +    + +        +         ++ ++
Sbjct: 5   LEQFLAYLTVERGLTGNTIAAYRTDLDQFVNFIVERNTGSWSNVSRDDLLAFLLFLKEKR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  S+  +   +++  F++   Q  +  NP  +++ PK      +  T   + +      
Sbjct: 65  YATSTIARRTAAIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELLELPL 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + +   E L  +G+R S+     V  +   I  I+   K      + +    
Sbjct: 125 TTSGPEGLRDKAMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKERNLPIVGSA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
              L                    F+N+  +++    F +  K  A + G+ + + H +R
Sbjct: 185 STALEEYLDIARGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLSDLTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
              AT   + G    E+    G  ++   + YT  + DR     + ++R
Sbjct: 245 HSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVKYDQAAQR 293


>gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
 gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           +I ++  +      L+ N+  S+      + +              +  +   +      
Sbjct: 21  IIEQFLDNIWLEQGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTLDLQSFLATRLDEG 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  SSA + L++MR LF++  R++    +P   +  PK      +  +++ +    +   
Sbjct: 81  YKASSAARLLSTMRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQVDDLLNAPC 140

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 141 IDEPLELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAI 200

Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L           +              QKM    F    K  A  AG++    S H +
Sbjct: 201 YWLEQYLQYGRPTLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDTEKLSPHVL 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 261 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 300


>gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114]
 gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
 gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11]
          Length = 298

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 98/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            L+  +  +      L+ N+  S+ +   ++++   D          +     ++ +  +
Sbjct: 6   ALMERFLDTMWMERGLSENTLASYRNDLVKLLQWLEDNHYKCASISAMGLNEFQAYLVDK 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++  +S  + L+++R  F++  R++    +P   +  PK      +  ++E +    +  
Sbjct: 66  EYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQVDALLNAP 125

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + R   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 126 NVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKERLVPMGENA 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                    F +   ++M    F    K  A  AG++    S H 
Sbjct: 186 VDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGIDSDKLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
 gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3]
          Length = 296

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
 gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13]
          Length = 312

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 28/291 (9%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125
           +       + +      L+ N+  ++          + +   D D  K+   H+     +
Sbjct: 17  VDEFCDTVWLED----GLSKNTLDAYRRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWA 72

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           R      +SA + LT ++  ++  +R   ++ NPCL ++  K+     +  ++  ++   
Sbjct: 73  RHAESKATSANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQVEALL 132

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228
                    G + R   E +  SGLR S+     +  +  N              +    
Sbjct: 133 GAPDQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFG 192

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
               + +E      + L +     +  F+      M    F    K  A K+G+    S 
Sbjct: 193 EEARVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSP 252

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   + GA    +    G   +   + YT  A +    +    
Sbjct: 253 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMH 303


>gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
 gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 98/292 (33%), Gaps = 21/292 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  I +P + P    +L   +R      +++ ++R ++ S   Q           +   
Sbjct: 4   KKPRIPAPVQIPDAFSYL-QGFRDYLIAQTVSPHTRNAYLSDLVQCAECL-SKPLPEWNH 61

Query: 117 KHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             I   +     ++ +P S  + L+++R  +K+   Q+  + NP  + + PK      + 
Sbjct: 62  DDISDVLIALTKQQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKD 121

Query: 174 WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            ++ D++         +    + R  FE L   GLR ++     ++ +      ++    
Sbjct: 122 LSEADVEALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGK 181

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATK 279
                 + +     + +                           M+   F    K  A +
Sbjct: 182 GNKERLIPMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 241

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AG+    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 242 AGIQSELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293


>gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440]
 gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1]
 gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD
 gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440]
 gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1]
          Length = 298

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R+S+ S          +            I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 VWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202]
 gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60]
          Length = 299

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 95/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
            LI ++  +     +LA N+  S+      +       D   +T  H       +     
Sbjct: 7   ALIEQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLTLLTAAHGDLQDFFAQRMDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L+++R  +++  R++  + +P   +  PK      +  ++  +       
Sbjct: 67  GYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQVDALLQAP 126

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +  +    + +   E L  +GLR S+      + +      ++          V L +  
Sbjct: 127 AIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A  AG++    S H 
Sbjct: 187 IYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDAERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
 gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN]
          Length = 296

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIR---SGVESRKHTPSSAIQFLT 138
             L+ N+  S+++   +        +      I    +    + + +   + ++  + ++
Sbjct: 16  RGLSNNTIQSYQNDLKKAAEYFTSQNLSSWGDIDRYAVLNLLAHLTNLGQSRTTIGRQVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  +++ +RQ  V  +P   V  PK +       T++++++  +    G     + R 
Sbjct: 76  SLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEVRRMLAVPDTGKKMGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E +  +G+R S+     +  L  ++       K      + + +     L        
Sbjct: 136 ILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGDKERIIPIGEVAESWLNRYLHSVR 195

Query: 254 -----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N   +++         K  A  A ++K  + H +R   AT   + 
Sbjct: 196 APQLANKPASDFVFLNARAKQLTRQAIWQLIKKTAQAAKIDKDVTPHTMRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRVVQELLGHSDITTTQIYTH-VSQKRL 285


>gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 18/276 (6%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + L+  ++    +  SL+ NS  +++    ++ R + D++          S +  +  + 
Sbjct: 5   EELVKRFQHYMKYDLSLSENSIEAYKRDLMELTRFTKDYNLTPSDLVSYMSHLRKKGLSI 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S ++ L+ +   + + ++++    NP  S+ +PK+  +  +    E+++   +   +  
Sbjct: 65  ESILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFLNFEEVEALINAPDKST 124

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
             G +  +  +    +G+R S+  +     +           K      + +       L
Sbjct: 125 PTGYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVSVVGKGSKQRFLPIYQSLQDEL 184

Query: 246 AMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                 +  +FI                +      +  K    KAG+ K  S H +R   
Sbjct: 185 KQYIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIKKYCKKAGIKKDISPHTLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT     GA    +    G   +   E YT   D  
Sbjct: 245 ATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK 280


>gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA N+ +S+E      ++             +    I   +   K    S+    + +
Sbjct: 16  KGLAKNTIVSYERDLKSYLKYLKSEEKISSLESVQRTQIVQFLGFLKKQGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR 193
            S+R   ++ +R++ V  +P + +E P+ +    +    +++       +     G + +
Sbjct: 76  ASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLLDFPEIKDHFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     +  +   +  ++          V +     + L       
Sbjct: 136 AMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKERIVPIGKTASEALEKYLNEG 195

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      E  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   +
Sbjct: 196 RGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G   +   + YT      
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285


>gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360]
 gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20]
 gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313]
          Length = 294

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124
           + L+  +         L++N+  S++   +Q I    D   + I      T       ++
Sbjct: 2   EELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQ 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
            +    S+  + L S+R  +++  ++  ++ +P  ++E PK + +  +  + ++++    
Sbjct: 62  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q K    +G + +   E L  +G+R S+     +  +   +  I+  K      V +   
Sbjct: 122 QPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSV 181

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                ++  F+N + +++    F    K    +A +NK  + H 
Sbjct: 182 SVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   A    + GA    +    G   +   + Y + A   
Sbjct: 242 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNR 282


>gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
 gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563]
          Length = 309

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 26/287 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI------TT 116
             +    L  +I ++  +      LA NS IS++   ++++         K+      T 
Sbjct: 6   EERVSMKLTEVIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKVQVISQDTV 65

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 ++      S+   +++++R  F++      +  NP   +  PK+        T 
Sbjct: 66  LDHLKWMDEDHLATSTRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHLPAVLTL 125

Query: 177 EDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
           +++ +           G + R   E L  +G+R S+     ++ +  +  F     K G 
Sbjct: 126 DEVDRILATPDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDMGFIQTIGKGGK 185

Query: 232 IITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
              V + +     +                  +   F+NN  + ++        K     
Sbjct: 186 ERLVPIGEMAEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQGVWKNLKKMVMM 245

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +  + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 246 AHITKDISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTH 292


>gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619]
 gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619]
          Length = 298

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R+S+ S          D          + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLDQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  F++ +R++ +A++P L +E P+      +  ++ D+        
Sbjct: 68  YKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 LWLERYLRDGRVELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC
           824]
 gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD
 gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC
           824]
 gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA
           2018]
          Length = 292

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 100/279 (35%), Gaps = 20/279 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           LI +Y       +L++N+  ++     +      +     R++    I S V+  +    
Sbjct: 4   LIEQYFAEIRKKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKNGR 63

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
              S ++ + S+R  FK+   +  +  NP    E PK +       T E++++       
Sbjct: 64  ANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPDG 123

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMK 243
              +G + +   E +  +G++ ++     +  +   +  IK +        + +    +K
Sbjct: 124 NTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAVK 183

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            L +             +  F N    KM    F    K  A ++G+ K  +A+ +R   
Sbjct: 184 CLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A      GA    +    G   +   + Y+    + R+ 
Sbjct: 244 AVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIA 282


>gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 305

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 111/291 (38%), Gaps = 28/291 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK---H 128
           + ++ +      +L+ N+  S+++      +     + D  ++  K++R  +   K   +
Sbjct: 11  VEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQY 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +  +  + L+++R  +KW  R++ +A +P L++  P+         T  D+ +       
Sbjct: 71  SAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCDV 130

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
               G + R   EFL  +G R S+     ++ +     +++   K      V L +  ++
Sbjct: 131 STAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAIE 190

Query: 244 LLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            L                        FI+     M+A      F +  T AG++   S H
Sbjct: 191 WLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSPH 250

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            +R   AT     GA    +    G +++   + YT    DR++   K + 
Sbjct: 251 AMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAH 301


>gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946]
 gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430]
 gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
            LI ++  +     +LA N+  S+      +           +       +   +     
Sbjct: 5   DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVANLQEFLAQRLEG 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS+ + L++MR LF++  R++    +P   +  PK      +  ++  +++     
Sbjct: 65  GYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 124

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     +  +      ++          V + +  
Sbjct: 125 CLDLPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKERLVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  AT AG++    S H 
Sbjct: 185 VHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSEKLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
 gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC
           27405]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124
           + L+  +         L++N+  S++   +Q I    D   + I      T       ++
Sbjct: 4   EELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQ 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
            +    S+  + L S+R  +++  ++  ++ +P  ++E PK + +  +  + ++++    
Sbjct: 64  KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 123

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q K    +G + +   E L  +G+R S+     +  +   +  I+  K      V +   
Sbjct: 124 QPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSV 183

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                ++  F+N + +++    F    K    +A +NK  + H 
Sbjct: 184 SVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   A    + GA    +    G   +   + Y + A   
Sbjct: 244 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNR 284


>gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76]
 gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470]
 gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + +++ +   
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
                   G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 APDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae
           WPP163]
 gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      +       D      + +  +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQALDLQAFLADRVDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +       
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALLDAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A +A ++    S H 
Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASIDSEKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
 gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17]
 gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 100/271 (36%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQHVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++       E    G + +
Sbjct: 76  ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKETSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 382

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 117/374 (31%), Gaps = 45/374 (12%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  +  YYF  G   G+R R+      T   A  +            +   +   +  
Sbjct: 6   RKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMSFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  +       +   N++ +++S+ +  +    G +  +++    ++  +  +     
Sbjct: 66  DFLDYWFDEYVMKNCKYNTQQTYKSFININLKPNLGIYKIKQLNYAALQEFLNKQYAHGY 125

Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS 184
           S    L  +R +   ++       +++ +NP  ++  P+           + E+  +   
Sbjct: 126 SKN-TLARLRSIISHSLEMAVSPYQFIKVNPAKNLTLPRFDNIAKENIVISIENFNKIIG 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------------TQ 227
            +  G+   +  +    +G+R  + C      +     +I+                  +
Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKILIFKTKQGYEFSTPK 244

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWF 273
             G+I T+ + D  + +L      +E    N                      T      
Sbjct: 245 TKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYYNDNNFVCTKENGSFVTMTSLRYLS 304

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
           +    +  +  + H +R   AT+  + GA   ++    G          Y+      ++ 
Sbjct: 305 RIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVT--AKMQ 362

Query: 333 IKNSRRISSVVDSD 346
                 + ++++ +
Sbjct: 363 NSTVNILENILNQE 376


>gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 290

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 110/281 (39%), Gaps = 25/281 (8%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129
           +Y         L+ N+  S+       +    + +    +++  + I + ++S K+    
Sbjct: 2   DYLHYLKVERGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS ++ ++S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +  
Sbjct: 62  NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 121

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + R   E +  +GLR S+     ++ L   + +     K      V + D  +K 
Sbjct: 122 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 181

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +                    F+N     +         KA+  KAG+ K  + H +R  
Sbjct: 182 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   + GA    +    G   +   + YT  ++  +L  
Sbjct: 242 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 281


>gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica]
          Length = 303

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVESRK 127
           LI ++  +      LA N+ IS+      +       G      + I  +   +      
Sbjct: 12  LIEQFLDAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSIDLQSFLAERVDGG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  SS+ + L++MR LF++  R++  A +P   +  PK      +  +++ ++   +   
Sbjct: 72  YKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQVEALLNAPC 131

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 132 TDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEAI 191

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L                    F +N  ++M    F    K  A  AG++    S H +
Sbjct: 192 YWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTERLSPHVL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R+RL  + 
Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 298


>gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8]
 gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX1322]
 gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8]
 gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411]
 gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688]
 gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688]
          Length = 298

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             L+  +         LA N+  S+                    +     ++  +  R 
Sbjct: 6   AALLDSFVDHLWLEDGLARNTLESYRRDLALFAEWLWSEHAKLLNQADQGDLQQYLAFRF 65

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            T  P S  + + S+R  +++ +R+  ++++P L ++ PK      +   ++++    + 
Sbjct: 66  PTSKPRSVSRLIASLRRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNA 125

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E L   GLR S+        +  N   ++          V L + 
Sbjct: 126 PDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEE 185

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                    F+    + M    F    K  A +AG++K  S H 
Sbjct: 186 SVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287


>gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ]
 gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ]
          Length = 298

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 105/290 (36%), Gaps = 24/290 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---KH 128
           I  + ++      L+ ++R ++ S  +       +      ++  + I   +  R    +
Sbjct: 9   IERFLEALWLEKGLSAHTRAAYRSDLELFNGWLCERGLALVEVGRELILDHLAWRVDAGY 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  +FL+ +R  F++ +R+  +A +P L VE P+      +  ++ D++   +    
Sbjct: 69  KARSTARFLSGLRGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEALLAAPED 128

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E L   GLR S+     ++ L      ++          V L +  + 
Sbjct: 129 DDPLGLRDRAMLEVLYACGLRVSELVGLRLEQLNLRQGVVRVFGKGSKERLVPLGEEAIA 188

Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            L                 +  F +   ++M    F    K  A  AG+ KS   H +R 
Sbjct: 189 WLERYLVEARPLLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAGIGKSLSPHTLRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHARHHPR 297


>gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
 gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 96/265 (36%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRS---GVESRKHTPSSAIQFL 137
            SL+ NS  ++    +++ +     D     ++IT   ++     +      PS+  + +
Sbjct: 18  RSLSGNSIEAYLGDLNKLSQYFESVDQTPQVKEITGDDLKHFVSWINELGMLPSTQARVV 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           + ++  F + + +E +  +P   +E P++        + +++            EG + +
Sbjct: 78  SGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEINGMIGAIDASKPEGMRNK 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L   GLR S+     +  +      I+          V +    +K + +     
Sbjct: 138 AILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVPIGQTALKYINIYLRES 197

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                     ++  F+N    +++        KA A K+G+ KS   H  R   AT   +
Sbjct: 198 RVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKKSISPHTFRHSFATHLIE 257

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   E YT 
Sbjct: 258 GGADLRAVQEMLGHSSITTTEIYTH 282


>gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
 gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991]
          Length = 302

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 30/296 (10%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRK 127
           + L+  + +      S + +++ +++    + I    +        +    + + +   +
Sbjct: 2   EDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLR 61

Query: 128 HTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       ++  + L+S+R  + +      +A NP +  + PK           ++
Sbjct: 62  DKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
           ++ F   +     +G + R  FE +   GLR S++     + +           K     
Sbjct: 122 IEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVNK 284
            V   D   +LL          +         +N   +K+              K  ++ 
Sbjct: 182 LVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHV 241

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
               H  R   AT   D GA    +    G  ++   + Y   + +R++   +++ 
Sbjct: 242 HVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAH 297


>gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
 gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2]
          Length = 294

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 104/281 (37%), Gaps = 23/281 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124
           + L+ ++         L++N+  S+    +Q I    +   + I      T       ++
Sbjct: 2   EDLVLKFLTFLEKDKRLSLNTLQSYRRDIEQYITYLNEIKLQNISNTNKTTVITYLLHLQ 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
            +    S+  + L S+R  +++  +   ++ +P   +E PK + +  +  + +++     
Sbjct: 62  KKGRATSTISRNLASIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLD 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q K    +G + +   E L  +G+R S+     V  +  ++  IK  K      + +   
Sbjct: 122 QPKCDDLKGFRDKAMLELLYATGIRVSELICLNVLDINLDMGFIKCNKGTRERMIPIGSL 181

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            ++ L                ++  F+N + +++    F    K     A +NK  + H 
Sbjct: 182 SIQALNEYLAKSRNLLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNLAKINKDITPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   A    + GA    +    G   +   + Y + A   
Sbjct: 242 LRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNR 282


>gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13]
          Length = 296

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             LA N+ +S+E      +              ++   I   ++       +  +  + +
Sbjct: 16  KGLASNTVVSYERDLKSYLLYLSKVEEISSLEAVSRSTIIQFLKFLTENGKSSKTIARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + ++RPK++ +  +  + E++Q            G + +
Sbjct: 76  ASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALLDSPDTSKVFGMRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          + L       +       
Sbjct: 136 AMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKERIIPLGTMAQNAITNYIEES 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            +           F+N    ++    F    K    +AG+ K  + H +R   AT   + 
Sbjct: 196 RSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp]
 gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp]
          Length = 298

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           I  + ++      L+ ++R ++ S  +             + I    I   +  R     
Sbjct: 9   IERFLETLWLEKGLSAHTRAAYRSDLEHFNHWLDGRGLQLQCIGRDAILDHLAWRLEQGY 68

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
            A    +FL+ +R  +++ +R+  V  +P L VE P+      +  ++ D++        
Sbjct: 69  QARSTARFLSGVRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEALLQAPDL 128

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E L   GLR S+     ++ +      ++          V L +  + 
Sbjct: 129 DDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAIA 188

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            +                    F +   ++M    F    K +A  AG+ KS   H +R 
Sbjct: 189 WIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKSLSPHTLRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   + GA    +    G   +   + YT  A R RL
Sbjct: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARL 287


>gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
 gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1]
          Length = 303

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 25/290 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR-- 126
            L+ E+  +      L+ N+  S+    ++             +  T   I+  +     
Sbjct: 10  DLLDEFSDALWLEDGLSRNTLESYRRDLNKFTEWLQKQRGCGLQAATHADIQGFLAHLVS 69

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K   +S  + ++S++ LF++ +RQ  +  +P L +  PK      +  T+ED++   +
Sbjct: 70  GEKAKATSTSRAISSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDVELLLN 129

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                +    + R   E L  SGLR S+     V  +  ++   +          V L +
Sbjct: 130 APDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLGE 189

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  +                 +  F+    + M    F    K  A + G++K  S H
Sbjct: 190 EALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A      +    
Sbjct: 250 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMH 299


>gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
 gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272]
 gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273]
          Length = 296

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKAVSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302]
          Length = 296

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 287

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 95/275 (34%), Gaps = 20/275 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRKH 128
            L  +Y         ++N+ +S+    ++ +      +   I        +     +RK 
Sbjct: 3   DLFIDYL--LLEKGFSLNTLLSYRRDLEKFVSFLEKRNISIIDATSKDIKLYLQDLARKL 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
            P+S  + L ++R  +K+ +R++ V  NP L V+ PK   +     + E++         
Sbjct: 61  KPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEIDLLLKAPDL 120

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTIITVE 236
              EG + R   E L  +GLR S+     + +L  +                    +   
Sbjct: 121 STWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIVPFGEVAAH 180

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
             + ++ L A         FI           F    K    KAG+  N + H +R   A
Sbjct: 181 YLNQYLALRAKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNLTPHLIRHSFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   ++  + YT    R 
Sbjct: 241 THLLENGADLRIVQELLGHSFIETTQIYTHLTTRK 275


>gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 299

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      +       D      + +  +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSLDLQAFLADRVEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQVDTLLNAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A  A ++    S H 
Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSEKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1]
 gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241]
 gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1]
          Length = 285

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 5   KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 64

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 65  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 124

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 125 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 184

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 185 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 245 GADLRAVQEMLGHADISTTQIYTHVSKTR 273


>gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2]
 gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3]
 gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5]
 gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1]
 gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1]
 gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6]
 gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11]
 gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583]
 gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           TX0104]
 gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           HH22]
 gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2]
 gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3]
 gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5]
 gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1]
 gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6]
 gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11]
 gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712]
 gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613]
 gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1]
 gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11]
 gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860]
 gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134]
 gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855]
 gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248]
 gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512]
 gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516]
 gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137]
 gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017]
 gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027]
 gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141]
 gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244]
 gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012]
 gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645]
 gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341]
 gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346]
 gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B]
 gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A]
 gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62]
          Length = 296

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 311

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 31/294 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FD 110
             +         +      LI +Y       + + N+  ++ S          +    +D
Sbjct: 7   MKRESEEKQGLLERYNFPELIEDYLVELEIRNYSPNTIKTYRSIVKNFYEFLMEEDDLYD 66

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            R++     R     ++    +          ++  F+++       I+    V+ PKR 
Sbjct: 67  DRRVLRSFKRYIQYLKRDKNVTQNYIYLVTVVIKKFFEFSE------IDCLQEVKAPKRT 120

Query: 168 TEGIRPWTKEDMQQFKSF-----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               +   ++++ +  +                ++ RL    L  SGLR S+     V  
Sbjct: 121 KSLPKSLNEDEVMRLINAVELSDDGSPIKRFIKTRDRLILSLLYSSGLRVSELVSLKVND 180

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +     +I+ +        V   +       + L+      E  F+N     +      +
Sbjct: 181 IDMGDRTIRIRGKGDKDRIVLFDESTRDLLVEYLSRRIHESEYLFLNRFGDPLTPRYVQM 240

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             K  A KAG+NK  + H +R   AT     G     +    G   +   + YT
Sbjct: 241 MIKNYARKAGINKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 294


>gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467]
          Length = 305

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
 gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271]
          Length = 296

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKI-TTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      +         D    ++   +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQVSDLQDFLAERVDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF++  R++  + +P   +  PK      +  T+  +       
Sbjct: 67  GYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLLQTP 126

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 127 CIENPIELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGIDSSRLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3]
 gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus
           horikoshii OT3]
          Length = 285

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 96/283 (33%), Gaps = 18/283 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ E+         + N+   +  Y  +   +   +           + +    ++  
Sbjct: 10  SDILEEFATYLELEGKSKNTIRMYTYYLSKFFEE--GYSPTARDALKFLAKLRKSGYSIR 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    + +++  FK+         +    ++ PK      +  T++++++     ++  +
Sbjct: 68  SLNLVIQALKSYFKFEG-----LDSEAEKLKNPKIPKSLPKSLTEDEVKK-IVSVADNLR 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245
            +L    L  +GLR S+ C   ++ +      +  +           I+  L     + L
Sbjct: 122 DKLILLLLYGAGLRVSELCNLKIEDVNFEKSFLIVRGGKGGKDRVIPISKTLLFEIERYL 181

Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                     F+   + +    +     +  K    K G+N + H +R   AT   + G 
Sbjct: 182 KTRKDNSPYLFVEKRRNRKDKLSPKTVWMLVKKYGKKVGLNVTPHQLRHSFATHMLERGV 241

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344
               +    G   +   + YTK   +  R  I+ ++ I +++ 
Sbjct: 242 DIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKAKLIETILG 284


>gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius
           UCC118]
 gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius
           UCC118]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 111/281 (39%), Gaps = 25/281 (8%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH---T 129
           +Y         L+ N+  S+   F   +    + +    +++  + I + ++S K+    
Sbjct: 9   DYLHYLKVERGLSENTINSYGIDFKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKA 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            SS ++ ++S+R  F++  +++ +  +P L ++ PK+K    +  TKE++++     +  
Sbjct: 69  NSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTG 128

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + R   E +  +GLR S+     ++ L   + +     K      V + D  +K 
Sbjct: 129 QVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKW 188

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +                    F+N     +         KA+  KAG+ K  + H +R  
Sbjct: 189 VNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   + GA    +    G   +   + YT  ++  +L  
Sbjct: 249 FATHILENGADLRIVQELLGHADISTTQIYTHLSN-KQLAD 288


>gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           10987]
 gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187]
 gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987]
 gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97]
 gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187]
 gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293]
 gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26]
 gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 296

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 24/285 (8%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSG 122
            T   L+  +         L+ N+  S+      +                +  +     
Sbjct: 1   MTNSALLDLFLNELWIGKGLSPNTVASYRLDLTALCDWLEARHLSLLSLDAVDLQTFLGE 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              + +  +S  + L+++R LF++  +++Y   +P   +  PK      +  T++ +   
Sbjct: 61  RVEQDYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDL 120

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +          + +   E L  +GLR ++        +  N   ++          V +
Sbjct: 121 LNVQSLEQPIELRDKAMLELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIVPM 180

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---K 284
            +     +    +               F +    +M    F    K  A  A ++    
Sbjct: 181 GEEATHWVKQFMLFARPMLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEML 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
 gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             L+  +         LA N+  S+                    +     ++  +  R 
Sbjct: 6   AALLDSFVDHLWLEDGLARNTLESYRRDLALFADWLWSEHAKLLNQADQGDLQQYLAFRF 65

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            T  P S  + + S+R  +++ +R+  V+++P L ++ PK      +   ++++    + 
Sbjct: 66  PTSKPRSVSRLIASLRRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNA 125

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E L   GLR S+        +  N   ++          V L + 
Sbjct: 126 PDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEE 185

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L                    F+    + M    F    K  A +AG++K  S H 
Sbjct: 186 SVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 287


>gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
 gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473]
          Length = 299

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           LI ++  +     +LA N+  S+      +       +          ++S +  R    
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPLDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR  F++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 316

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
            LI ++  +     +LA N+  S+      +           +       +   +     
Sbjct: 24  DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++     
Sbjct: 84  GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 143

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     +  +      ++          V + +  
Sbjct: 144 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 203

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  AT AG++    S H 
Sbjct: 204 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 263

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 264 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 304


>gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 308

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 89/283 (31%), Gaps = 24/283 (8%)

Query: 66  KKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG 122
             P TL+    E+    +   +LA+N+   + +   ++ R  G        +T   +R  
Sbjct: 3   DAPATLQEACEEFLLYESSVRNLALNTIAGYRNDLARLCRLLGGASLPLTSVTVTDLRFC 62

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
           +          SS  +F+ ++R LF +  R EY+  NP   +   K+     R  T+   
Sbjct: 63  IGELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHLPRFMTESEV 122

Query: 178 ---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII 233
                Q  +      ++    FE L  SG R S+     +     +  S      G    
Sbjct: 123 DALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADFRSAVVTGKGGKDR 182

Query: 234 TVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            V   +   K L                    FIN     +            +   G +
Sbjct: 183 RVFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGIRYIVSRYSGLEGTD 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  S H  R   AT     GA    +    G  ++   + YT 
Sbjct: 243 KPVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTH 285


>gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 333

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 19/281 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           + +++ I   +        +P
Sbjct: 47  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDVLIELTKAGKSP 106

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+    NP  S   PK      +  +++D++   +      
Sbjct: 107 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 166

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 167 TLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYACDWI 226

Query: 246 AMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                           +  F+      M+   F    K  A +A +    S H +R   A
Sbjct: 227 EKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 286

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           T   + GA    +    G   +   + YT  A      + +
Sbjct: 287 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHH 327


>gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PA7]
 gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7]
          Length = 298

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 103/296 (34%), Gaps = 25/296 (8%)

Query: 70  TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125
           TL+  LI  +  +      LA N+R ++ +  +Q              +    I   +  
Sbjct: 3   TLEHPLIDRFLDALWLEKGLADNTREAYRNDLEQFNAWLDGHGLRLEGVGRDAILDHLAW 62

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R    +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++  
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
            +        G + R   E L   GLR S+     ++ +           K      V L
Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182

Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
            +  +  L                 +  F +   ++M    F    K  A  A + KS  
Sbjct: 183 GEEAIGWLERYLREARADLLGGRPSDVLFPSLRGEQMTRQTFWHRIKRHAQVAAIGKSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H +R   AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297


>gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
 gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma
           proteobacterium HTCC2080]
          Length = 282

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138
             L+ N+  ++            +     +        +        +  +P S+ +FL+
Sbjct: 3   RGLSENTLAAYRRDLSLYDEWLAEQTAESLLTAGSSQIQSYLGLKLRQGASPRSSARFLS 62

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           + R  ++WA+R+ ++  +P L +E PK+     +  ++ D+++             + R 
Sbjct: 63  AARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELALEFRDRT 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L   GLR S+     V+ +  N   ++   K G    V + +  +  L     G  
Sbjct: 123 MLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEALDWLIQYMRGPR 182

Query: 254 TF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                       F +N  ++M    F    K    +AG+  + S H +R   AT   + G
Sbjct: 183 IELLKGQSSNVLFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHG 242

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 243 ADLRVVQMLLGHSDLSTTQIYTHVAKQR 270


>gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
            +  +  + +   +  +L+ N+  S+        +   +   DYR++  + I   ++   
Sbjct: 3   FEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELS 62

Query: 128 H--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +PSS  + L++++  + +      V   P   V+ PK +       + E++
Sbjct: 63  QGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEV 122

Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTII 233
           Q+    +     G + R     + Y GLR S+ C   ++ +      +   K+       
Sbjct: 123 QKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDKDR 182

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK 284
            V L    +++++     ++ F   N             +     +   +    K   +K
Sbjct: 183 IVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFPDK 242

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
               H  R   AT     GA+   +    G   +     Y    DR +   +  R +S+
Sbjct: 243 HLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKR--EAVRLLSN 299


>gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
 gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like
 gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1]
          Length = 282

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 18/284 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +I E+         + ++   +  Y  + +   GD      +     + +    ++  S
Sbjct: 6   EVIEEFETYLDLEGKSPHTIRMYTYYVRRYLEWGGD--LNAHSALRFLAHLRKNGYSNRS 63

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQ 191
               + ++R  F++         +    ++ PK      +  T+E++++  S       +
Sbjct: 64  LNLVVQALRAYFRFEG-----LDDEAERLKPPKVPRSLPKALTREEVKRLLSVIPPTRKR 118

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245
            RL    L  +GLR S+ C      +  +   I  +           I   L D     L
Sbjct: 119 DRLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGGKGAKDRVVPIPKYLADEIRAYL 178

Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                  E          K K++        K    KAGV  + H +R   AT   + G 
Sbjct: 179 ESRSDESEYLLVEDRRRRKDKLSTRNVWYLLKRYGQKAGVEVTPHKLRHSFATHLLEEGV 238

Query: 303 TAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345
               +    G   +   + YTK   + +R   + ++ I  ++  
Sbjct: 239 DIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKAKLIEKLMGE 282


>gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 27/277 (9%)

Query: 75  ISEYRKS-----AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           + EY  S      H    + N+  S+E       R     G  + + +T + I+  +E  
Sbjct: 1   MEEYITSFLYYLKHIKRASDNTVQSYERDLRYFERYVEEQGKIEIQSLTDQQIKVYLEHM 60

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K    + ++  + L S+R   ++ V+++ +  NP   +  PK + +  R  ++E +    
Sbjct: 61  KDEEKSTATISRTLASIRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLL 120

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              ++    G + R   E L  +G+R S+        +      I  +      T+ +  
Sbjct: 121 EQPNKKDTKGIRDRAMLELLYATGIRVSELISLKTTDINLQQGYIICRDAQKERTIPIGK 180

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +  L M                  F+N +   M    F    K  A  A +    + H
Sbjct: 181 SAISALNMYLGEVRHILIRSANDKTLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPH 240

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A      GA    +    G   +   + Y  
Sbjct: 241 MLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMH 277


>gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
 gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis
           SH0165]
          Length = 297

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+    +   +   +         +  +        
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + +  +S+ + L+ +R  F++   ++Y   +P  ++  P++     +  ++E +    + 
Sbjct: 64  QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR ++     + +L      ++          V L + 
Sbjct: 124 PNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +              +  +  F +    +M    F    K  A  AG++    S H
Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT+ A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR 285


>gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 97/290 (33%), Gaps = 21/290 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  I +P   P      +  +R      S++ ++R ++ S   Q   +       + ++
Sbjct: 4   KKPRIPAPVTIPEQFS-FLQGFRDYLVAQSVSPHTRNAYLSDLIQ-CAQLVVVPLPQWSS 61

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + I   +        +P S  + L+++R  FK+   Q+    NP    + PK      + 
Sbjct: 62  ETISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKD 121

Query: 174 WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +++D++         +    + R   E L   GLR S+     ++ +      ++    
Sbjct: 122 LSEQDVEALIHAPDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGK 181

Query: 230 -GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 V L       +                +  F+      M+   F    K  A +
Sbjct: 182 GNKERLVPLGQMATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQ 241

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A +    S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 242 ANILPEMSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQ 291


>gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
 gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755]
          Length = 297

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           L  +I ++  +      L+ N+  S+    +   +   +         +  +        
Sbjct: 4   LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           + +  +S+ + L+ +R  F++   ++Y   +P  ++  P++     +  ++E +      
Sbjct: 64  QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
             +      + +   E L  +GLR ++     + +L      ++          V L + 
Sbjct: 124 PDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +              +  +  F +    +M    F    K  A  AG++    S H
Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT+ A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR 285


>gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523]
          Length = 292

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKLLENYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLHAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                    FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
 gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 103/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
           ++ ++  S      L+ N+  S+ +   ++++     ++    I+   ++        + 
Sbjct: 11  IVEQFLDSMWMERGLSENTLASYRNDLVKLLQWMTANNYRLDFISLSGLQEYQSWLSDSG 70

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R LF++  R++  + +P   +  PK      +  T++ ++   +   
Sbjct: 71  YKQTSRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQVEALLNAPD 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +        +           F +   ++M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGIDTELLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W]
 gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSVFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
 gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 102/281 (36%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R+S+ S          +            I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLHERSVALPDAGRDLILDHLAWRLEQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +F++ +R  F++ +R++ VAI+P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                 +  F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 VWLERYLRSGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1]
 gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1]
          Length = 298

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R+S+ S          +          + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEQAVSLPDAGRELILDHLAWRLDQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  F++ +R+  VAI+P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 VWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
 gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25]
          Length = 361

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 142/333 (42%), Gaps = 25/333 (7%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K   R GK   YF++     ++LP     +  F+ AY  A + +  K            +
Sbjct: 16  KTVVRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSANPEKSP------AAAGS 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L+    KS H+    + +R  F  + D ++ + G+   R + ++HIR+ +       
Sbjct: 70  FAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL----PKS 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG 189
           +S    L + R L  + V    +  N  L V  PK +   G  PWT++++  F++ W  G
Sbjct: 126 TSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWPMG 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           S  R AFE L +SG R SD+ R G   ++  + + +  KT     +          A   
Sbjct: 186 SATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAHLS 245

Query: 250 IGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             +                 +   +  +        +  A +AG  KSAHG+RK  AT  
Sbjct: 246 EDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLATEL 305

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           A+ GATAH++ A  G +T+ + + YTK ADR R
Sbjct: 306 AEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338


>gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
 gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and
           repair) [Desulfobacterium autotrophicum HRM2]
          Length = 297

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 29/287 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV-------- 123
           +++++ ++       + ++  ++       +           IT + +   +        
Sbjct: 2   VVTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPV 61

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                    +K T  +  + L++++  F + V    + +NP   V  PK      +  T 
Sbjct: 62  RGFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTV 121

Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
           +++               + R  FE    +G+R S+     V  +      ++ +     
Sbjct: 122 DELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNR 181

Query: 232 IITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              V + D  +K +       +  F     N D  + + +             G+    S
Sbjct: 182 ERLVPVGDRALKAVDDYRTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H +R   AT   DAGA    +    G  ++   + YT      RL 
Sbjct: 242 PHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTY-ARLM 287


>gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 296

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM
           5265]
          Length = 288

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 103/286 (36%), Gaps = 22/286 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG-VES 125
           +  Y +       + ++  ++ S   Q  +   +            +I  +  RS  +  
Sbjct: 2   LELYHEYLVKKGKSPHTIKNYISDLMQFQKWFEESTGEQFSPGKITEIDVRSYRSYLINI 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+  PSS  + L ++R    W V+Q+ ++ NP   VE P   T   R  ++++  + +  
Sbjct: 62  RQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEKEFLRLRRS 121

Query: 186 WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELPD 239
           + +    +    FE L  +G+R S+ C   +  +Q +       ++  K      V L  
Sbjct: 122 FYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQKYREVPLNS 181

Query: 240 GFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              K L      +           ++  +  +      K  A  AGV  S H +R   A 
Sbjct: 182 DARKALNEYLKSRADENNERLFLGERGPLTPSGVFRIIKRYARDAGVEVSPHQLRHTFAR 241

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRI 339
               +GA    +    G   ++    Y K   A++    ++   ++
Sbjct: 242 RLLQSGADIVTVQQILGHANLNTTAVYLKPDYAEQEE-AVEKISKL 286


>gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548]
 gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548]
          Length = 292

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                    FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           ATCC 13032]
 gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD
 gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032]
 gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032]
          Length = 304

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
           L   +         L+ N+  ++    ++        G  D R ITT H+ S V+  +  
Sbjct: 6   LAKTWLTHLAVERGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRG 65

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178
                  + SSA + L   R L K+A+ +  VA +    V  P          +  +   
Sbjct: 66  IDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVAL 125

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
               +           + R   E L  +G R S++    V  +      ++         
Sbjct: 126 LIDAIPHSDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKQR 185

Query: 234 TVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            V       + +                   F+N     ++        K    +AG++K
Sbjct: 186 IVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDK 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             S H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 246 DISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294


>gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
 gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp.
           HGF1]
          Length = 371

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 94/366 (25%), Gaps = 39/366 (10%)

Query: 16  TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R     YY++    G   +       T   A  +         +          T++  
Sbjct: 7   KRGSTWSYYYKYKQDGTYKKKEKGGFKTKKDAQHALREALVIFEKQGLVQAATTYTIEEY 66

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPS 131
           I+ + ++     L  N+   +       I  + G      I    +++    + +  + S
Sbjct: 67  INYWMENVAEIKLRYNTLDLYRRAIRLHINPEIGFLKLNNIKADTLQTFFTTKQKALSDS 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   +   FK A++Q  +  NP   +E    K E        +  +        ++
Sbjct: 127 YINAIRNILNGTFKLAIKQGLILFNPMHQLELHYSKVEKNLEIITTEHLKIILDDISNTR 186

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------------ 221
             + F   L++G R  +        +                                  
Sbjct: 187 YYIPFIISLHTGARRGEILALTWDDIHFETRKITFNKSLLAKDGEGVSLAQTKTKSSIRT 246

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
              + K          +                +    N D   +N  +FS      + +
Sbjct: 247 ILMTQKLITELQQWQDKQNQNKQLYAEYYYTEHDFVCSNEDGTPINPKRFSTQINRISKR 306

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
             +    H +R   AT+  ++      +    G   +      Y+      +   +   +
Sbjct: 307 LNIPIKFHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQ--KTEAEAIAK 364

Query: 339 ISSVVD 344
             S ++
Sbjct: 365 FESNLN 370


>gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 324

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 94/271 (34%), Gaps = 12/271 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           ++ +  S     L+  +   +        +   +   ++ITT  IR+ + +R    S+  
Sbjct: 52  LNMFLLSKKMEGLSEKTIDKYRKTILDFAKYV-NKPLKRITTADIRTWLSNRDIKISTVR 110

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  +R  + + + +E VA++P   ++ PK +    +    ++++          + + 
Sbjct: 111 YRLAVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEV-LREGCNTLREKA 169

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253
             E    +G R  +   A    +     S+    K      V +       L      ++
Sbjct: 170 LLEIFYATGCRIGEVFGANKIDINWQERSLVVLGKGNKERIVFIGARAAHSLKKYLNSRQ 229

Query: 254 TFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
                         Q+++     + FK  A +  ++K+   H  R   AT   + GA   
Sbjct: 230 DNEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIFRHTLATALLNHGARLE 289

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           ++    G       + Y K + +R +L    
Sbjct: 290 DVQDLLGHTNPSTTQIYCKVSPERKKLAYNQ 320


>gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
 gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC
 gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941]
          Length = 314

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 91/276 (32%), Gaps = 26/276 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRK 127
           +  + +  A   +L+ N+  ++ +  +Q               +T   + + +     R+
Sbjct: 5   VEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRERR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  S+  + + +++  F +   +  V  +P   ++ PK   +  R  T   + +      
Sbjct: 65  YASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLELPL 124

Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241
                   + +   E L  +G+R S+     V  +      ++          + +    
Sbjct: 125 RSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPINGSA 184

Query: 242 MKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
              L                      F+N+  +++    F +  K  A + G+ + + H 
Sbjct: 185 ATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSDLTPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A    +AG     +    G  ++   + YT 
Sbjct: 245 LRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTH 280


>gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
 gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3]
 gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28]
 gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29]
 gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18]
          Length = 296

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQMKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
 gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117]
          Length = 307

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 32/292 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI--------RSG 122
           +  Y +       LA N+  S+     + +      G    +KIT   I        R  
Sbjct: 9   LKRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQPQKITELAISGYLQDLSRGN 68

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            + +  +  S  +   ++R L K+   +     NP   ++ P       +  + + +   
Sbjct: 69  EKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTSI 128

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
                     G + R   EFL  +G R S+     V  L     ++     K      V 
Sbjct: 129 LESVSIETPAGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGSKERVVP 188

Query: 237 LPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
           +     +            LA    G    F+N    +++     +     A +AG+   
Sbjct: 189 VGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAERAGITTE 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
            S H +R   AT   + GA    +    G  +V   + YTK   D +R   +
Sbjct: 249 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQ 300


>gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 306

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 19/281 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           + +++ I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDVLIELTKAGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+    NP  S   PK      +  +++D++   +      
Sbjct: 80  RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 TLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYACDWI 199

Query: 246 AMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                           +  F+      M+   F    K  A +A +    S H +R   A
Sbjct: 200 EKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           T   + GA    +    G   +   + YT  A      + +
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHH 300


>gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH]
 gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH]
          Length = 275

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 18/260 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +  + +       ++ N+  +++    Q           +     I S + S  +   S
Sbjct: 4   YLEAFLEYLQINKGVSKNTYEAYKRDLLQFEEYI-KKPIIEADNMDIISFLSSIGNK-RS 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSE 188
             + L+S+   F +A +           +++ K      +  TK      ++  K     
Sbjct: 62  LNRKLSSINSFFDFAYKHGMSDTKH--KIKQAKIPKTLPKFLTKEEILNAIKNIKPEKWF 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKL 244
             + +    F+  +GLR S++    +  ++N    +   K      V +     D   + 
Sbjct: 120 DLRDKSLILFIYATGLRISEALNTKISDIENGWVKVTMAKGEKQRIVPIAKVALDAIEEY 179

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           L   P   E  F+N D + ++        K       +N S H +R   AT     GA  
Sbjct: 180 LKKRPCQSEYLFVNKDCKPLSRISAFNITKKY-----LNVSPHVLRHSFATALVLGGADL 234

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G  +++  + YT 
Sbjct: 235 RVVQELLGHSSLNTTQIYTH 254


>gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 303

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 24/281 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----P 130
             + +      +L+ N+  S+    D+ +   G     ++ T  I S + S         
Sbjct: 14  ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVTELNTGDIESFMASLAKGEGLAA 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+  + L ++R   ++   +     +    V RP +     +  +  ++           
Sbjct: 74  STRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPNDD 133

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + R   E L  +G R S+     V  +       I   K      V + D  +
Sbjct: 134 AASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDPAL 193

Query: 243 KLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
             L    +     F          N +  +M          + + KAGV   S H  R  
Sbjct: 194 DALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAGVSPHSFRHS 253

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
            AT   + GA    +    G   V   + YTK + D +R  
Sbjct: 254 FATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREA 294


>gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 301

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 33/300 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127
            +I ++  +      L+ N+  ++ S   +                I T+ I   +  R 
Sbjct: 9   AVIEQFLDTIWLEKGLSENTLEAYRSDLTKFSDYLNKQLPHTHLLDIQTEDINQYMAHRY 68

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +     S+ + L+S R    + +       +P   ++ PK      +  +++ +    +
Sbjct: 69  DSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLN 128

Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                     + +   E L  +GLR ++     V  L  +   ++          V L +
Sbjct: 129 APQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKERLVPLGE 188

Query: 240 GFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +  L+               +  F +N    M    F    K  A +A +  + S H 
Sbjct: 189 EALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITSDLSPHT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G   +   + YT            + R+  +V +  P
Sbjct: 249 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLQELVANHHP 299


>gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
 gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Ames]
 gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Sterne]
 gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
 gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           str. Al Hakam]
 gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           A1055]
 gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Kruger B]
 gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Vollum]
 gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str.
           Australia 94]
 gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames]
 gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne]
 gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488]
 gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193]
 gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442]
 gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389]
 gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465]
 gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174]
 gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I]
 gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108]
 gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99]
 gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820]
 gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102]
 gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684]
 gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1]
 gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201]
 gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42]
 gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248]
 gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf0-1]
 gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 298

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI ++  +      L+ N+R ++ S          D     I    + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELINAGRELILDHLAWRLEQN 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ ++++P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADVEALLKAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +                 +  F +   ++M    F    K +A  AG++KS   H +R
Sbjct: 188 VWVERYLRDGRGELLGGRPSDVLFPSQRGEQMTRQTFWHRIKHQAKVAGISKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297


>gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG]
 gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG]
          Length = 292

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                    FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARMSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
 gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREARIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
 gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112]
 gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549]
 gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida
           FTE]
          Length = 292

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
 gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++            G + +
Sbjct: 76  ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEVEALLQTPKATSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 297

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125
             L+  +         L+ N+  S+      +                +  +        
Sbjct: 4   SALLDLFLNELWIGKGLSPNTVESYRLDLTALCDWLEARHLSLLGLDAVDLQAFLGERVE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  +S  + L++MR LF++  +++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR ++        +  N   ++          V + + 
Sbjct: 124 QSLEQPIELRDKAMLELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIVPMGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +    +               F +    +M    F    K  A  A ++    S H
Sbjct: 184 ATHWVKQFMLFARPMLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
 gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782]
          Length = 294

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQF 136
               L++N+  S++   +Q I    + +   I      T       ++ +    S+  + 
Sbjct: 14  RDKRLSLNTLQSYKRDIEQYITYLKEINVTNIANTNKTTVIAYLLHLQKKGRATSTISRN 73

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQP 192
           L S+R  +++  + + +  +P   +E PK + +  +  + ++++    Q K    +G + 
Sbjct: 74  LASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLEQPKCLDLKGIRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           +   E L  +G+R S+     +  +   +  I+  K     T+ +    M  +       
Sbjct: 134 KAMLELLYATGIRVSELISLNLDDINFELGFIRCNKGTRERTIPIGSISMAAVHEYLDKS 193

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             F          F+N + +++    F    K    +A +NK  + H +R   A    + 
Sbjct: 194 RNFLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLEN 253

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + Y + A   
Sbjct: 254 GADLRSIQEMLGHSDISSTQIYAQIAKNK 282


>gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L]
 gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L]
 gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342]
 gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 296

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
 gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG]
          Length = 293

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 22/282 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT- 129
           LI+++         LA  +++S++      +    D            I++ ++ +  T 
Sbjct: 4   LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
            P+S  + ++++R  +++ +R+  +  +P   ++ PK+        +  +    M +  +
Sbjct: 64  APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDT 123

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G + R  FE +  +GLR S+     +  L   +     T K      V +      
Sbjct: 124 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 183

Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                 +  F+N     +         KA     G+ K  + H +R 
Sbjct: 184 WVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             AT   + GA    +    G   +   + YT  +++  + +
Sbjct: 244 SFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 306

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           + T+ +I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSLLPEWTSDNIADVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++         +
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R  FE L   GLR S+     ++ +      ++          V L     + +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQFACEWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct]
          Length = 327

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 21/280 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +  +  +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 27  VSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 86

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 87  GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 146

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 147 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 206

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K  A  AG+  + S H +
Sbjct: 207 LEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 266

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 267 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 306


>gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
 gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2]
          Length = 293

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 100/281 (35%), Gaps = 23/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128
            LI E+         LA N+  ++     + +    + +      +   IR  + +  H 
Sbjct: 3   DLIDEFITYLRVERGLAENTVHAYSRDLIRFVAYLENRNITPVDCSRTAIRDYLGTLTHE 62

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
            +  S  + +++++  +++ V +  +  NP   VE P+ + +     + +++++      
Sbjct: 63  LSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSVDEVERLLLQPD 122

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+  R  +  +      +K   K      V   +   
Sbjct: 123 GATPIGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKALGKGSKERMVPFGEKAR 182

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           + L                    F+N   + +    F    K     AG+ K+   HG+R
Sbjct: 183 QALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNHGIMAGIKKNIKPHGLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A+   +AGA    +    G   +   + YT    R RL
Sbjct: 243 HSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVT-RERL 282


>gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 309

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
            LI ++  +     +LA N+  S+      +           +       +   +     
Sbjct: 17  DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 76

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++     
Sbjct: 77  GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 136

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     +  +      ++          V + +  
Sbjct: 137 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 196

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  AT AG++    S H 
Sbjct: 197 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 256

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 257 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 297


>gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
 gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638]
          Length = 299

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +       D   +       +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R++L  + 
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294


>gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens
           YS-314]
 gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
 gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD
 gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314]
 gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314]
          Length = 304

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 31/286 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
           ++ L   +         L+ N+  S+    ++           D  +I T  + + V   
Sbjct: 3   VRDLARTWLTHLAVERGLSSNTLSSYRRDIERYCDWLEAARIGDISEIATATVEAYVMDL 62

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         + SSA + L  +R L K+A+ +  V ++    V  P          +  +
Sbjct: 63  RRGVDGRAPLSASSAGRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPE 122

Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  +           + R   E L  +G R S++    V  + +    ++    G+
Sbjct: 123 VETLIDAIPTSDIATPVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGKGS 182

Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281
              +       +      + +             F+N     ++        K  A +AG
Sbjct: 183 KQRMVPYGSMARAAVDDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGRAG 242

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  + S H +R   AT   + GA    +    G  +V   + YT  
Sbjct: 243 IAKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHV 288


>gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      I+   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYIKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
 gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71]
          Length = 302

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 23/285 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           L+  Y  +      L+ N+  ++        R +        +I    I + + S    K
Sbjct: 12  LLESYLDAVWMEKGLSENTLAAYRRDLQAFARWALSRQRTATQIERSDIEAYLASLLEKK 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +P SA + L+ +R  +++ +R   +  +P L ++ P+      +  ++ D+        
Sbjct: 72  SSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSEVDVDALLKAPK 131

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                G + R   E L   GLR S+     +  L  N   ++    G     V + +  +
Sbjct: 132 LDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKERLVPIGEEAL 191

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   ++M    F    K  A  AG+ K  S H +R
Sbjct: 192 HWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGIRKPISPHVLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              AT   + GA    +    G   +   + YT  A +    +  
Sbjct: 252 HAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHA 296


>gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
 gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 298

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
 gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573]
          Length = 302

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +      LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQLDFISFSGLQEYQNWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
             +    + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  A ++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617]
          Length = 297

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126
            LI ++  +     +LA N+  S+      +           +       +   +     
Sbjct: 5   DLIEQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLEG 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++     
Sbjct: 65  GYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQAP 124

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     +  +      ++          V + +  
Sbjct: 125 CLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  AT AG++    S H 
Sbjct: 185 VHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1]
 gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188]
 gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98]
 gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis
           ATCC 29200]
 gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1]
 gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188]
 gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98]
 gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102]
 gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031]
 gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043]
 gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312]
 gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630]
 gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+  Y         L+ N+R S+E    + +      G   + ++    I   ++S  
Sbjct: 3   EQLVD-YLHYLQIERGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLH 61

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                 +S I+ ++S+R   ++  ++     NP   ++ PK+  +     + ++    ++
Sbjct: 62  EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQK 228
              +    G + R   E +  +GLR S+     +  L             +    I    
Sbjct: 122 TPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGD 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +     L      +   F+N+  + ++        K    +A + K  + 
Sbjct: 182 YAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREARIEKNITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT    + R+  
Sbjct: 242 HTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQ-RMAD 287


>gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum
           R]
 gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 304

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 93/289 (32%), Gaps = 32/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
           L   +         L+ N+  ++    ++        G  D R ITT H+ S V+  +  
Sbjct: 6   LAKTWLTHLAVERGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRG 65

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178
                  + SSA + L   R L K+A+ +  VA +    V  P          +  +   
Sbjct: 66  IDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVAL 125

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKT 229
               +           + R   E L  +G R S++    V  +      ++      +K 
Sbjct: 126 LIDAIPHSDIATPVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKKR 185

Query: 230 GTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                        + L               F+N     ++        K    +AG++K
Sbjct: 186 IVPFGSMAQQAVREYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDK 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             S H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 246 DISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294


>gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 299

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +       D   +       +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  ++   +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVEALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R++L  + 
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294


>gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC
           14579]
 gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264]
 gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134]
 gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264]
 gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842]
 gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W]
 gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550]
 gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24]
 gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4]
 gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15]
 gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2]
 gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185]
 gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676]
 gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407]
 gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200]
 gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222]
 gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD
 gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei]
          Length = 293

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 22/282 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT- 129
           LI+++         LA  +++S++      +    D            I++ ++ +  T 
Sbjct: 4   LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184
            P+S  + ++++R  +++ +R+  +  +P   ++ PK+        +  +    M +  +
Sbjct: 64  APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDT 123

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G + R  FE +  +GLR S+     +  L   +     T K      V +      
Sbjct: 124 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 183

Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +                 +  F+N     +         KA     G+ K  + H +R 
Sbjct: 184 WVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTPHTLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             AT   + GA    +    G   +   + YT  +++  + +
Sbjct: 244 SFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155]
 gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155]
          Length = 309

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R  G          +   +   +    + 
Sbjct: 19  LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQD 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + +  +P   VE PK         ++  + +  S  +
Sbjct: 79  FARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298


>gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           257]
 gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 292

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12]
 gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
 gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12]
 gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1]
          Length = 295

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I++Y    +    L+ N+R S+E   +Q +    +        +    +   +E     K
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++      
Sbjct: 65  KATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E +  +G+R S+     +  L  ++       K      + L D  +
Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L                +   F+NN  + ++        K    +AG+    + H +R
Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT    + 
Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283


>gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
 gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10]
          Length = 294

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 102/278 (36%), Gaps = 23/278 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRK 127
           + ++         L++N+  S++   +Q I    + +   I      T       ++ + 
Sbjct: 5   VEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQKKG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
              S+  + L S+R  +++  + + +  +P   +E PK + +  +  + +++     Q K
Sbjct: 65  RATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQPK 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +G + +   E L  +G+R S+     +  +  ++  IK  K     T+ +      
Sbjct: 125 CLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCNKGTRERTIPIGSISTA 184

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         F          F+N + +++    F    K    +A +NK  + H +R 
Sbjct: 185 AVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A    + GA    +    G   +   + Y + A   
Sbjct: 245 SFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNK 282


>gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
          Length = 290

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 6   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 66  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 125

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 126 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 185

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 186 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 246 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 284


>gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
 gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1]
 gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1]
 gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT]
          Length = 307

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
            ++Y +      +++  +  ++ +     +    +       ++    +R  + S     
Sbjct: 5   FNKYLEYLSVEKNVSPYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + L+++R  +++ +R+  +  NP L+   P+         T  ++ +      
Sbjct: 65  IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEVNKLLRVPD 124

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               +G + +   E L  SGLR S+  +  ++++  +   I+          V      +
Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVVLAGLPAI 184

Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290
           + +                             +A  F       A +AG+ K    H +R
Sbjct: 185 QSIQNYLNLGRPLLKGKRNTPALFLNPTGGRLSARSFQERLDKLAKQAGIEKHVHPHMLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
              AT   D GA    +    G   +   + YT     + R
Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285


>gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703]
          Length = 299

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +       D   +       +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R++L  + 
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 294


>gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
 gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492]
 gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36]
          Length = 317

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 27/313 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +    S  K+  TL  +I +Y +       L+ N+  ++++   +++          + T
Sbjct: 2   KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59

Query: 117 -----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                +H  SG+      P S  + L+ ++  F + V  +Y+  +P   +E PK   +  
Sbjct: 60  TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLP 119

Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
              T E++ +  S    G+    + R   E L   GLR S+ C   +  L  +  F    
Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKA 275
            K      V +    +K +    + +   +                + ++        K 
Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A KAG+ K  S H  R   AT   + GA    + +  G +++   E YT   DR RL  
Sbjct: 240 LAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRLRS 298

Query: 334 KNSRRISSVVDSD 346
           +        +   
Sbjct: 299 EIIEHHPRNIKYR 311


>gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
 gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236]
          Length = 299

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 26/281 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR--- 126
           LI ++  +     +LA N+  S+      +   +   G    R +  + ++S +  R   
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALTGWLECHGSDLLRAV-PQDLQSFLAERIEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  Q+M    F    K  A  AG++    S H 
Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
 gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           R3021]
          Length = 297

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 299

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      +       D      + +  +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQALDLQAFLADRVDG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLNAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +N  ++M    F    K  A  A ++    S H 
Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASIDSEKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDSVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 306

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
             + ++         L++++  +++    ++ +  G +++  +T   I+  +   K   H
Sbjct: 13  QWLDKFLLHLQVERGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGH 72

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S    L+++R   ++ +  + +  NP   ++ PK+     +  + ++MQQ  +   +
Sbjct: 73  SPRSIALRLSALRTFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQ 132

Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            S        +    FE L   GLR S+     +     +       K      + L   
Sbjct: 133 SSDEDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKDGTVKVMGKGSKQRILPLGRH 192

Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             K L      +  +             K +++  Q +      A +  +    S H +R
Sbjct: 193 AQKALNAWLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMAKEHSLSQKVSPHKLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 253 HSFATHVLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 293


>gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15]
 gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980]
 gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15]
 gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980]
          Length = 295

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I++Y    +    L+ N+R S+E   +Q +    +        +    +   +E     K
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKMHEEK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++      
Sbjct: 65  KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E +  +G+R S+     +  L  ++       K      + L D  +
Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L                +   F+NN  + ++        K    +AG+    + H +R
Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT    + 
Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283


>gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 305

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130
           +++Y         L  N+  S+                     +    + + ++      
Sbjct: 14  LADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAG 73

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S    +   +S+R  F++  +   +  +P L ++ PKR     +  +  ++++  +   
Sbjct: 74  KSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPK 133

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
             +    + R   E +  +GLR S++    +  L  ++       K      + + D  +
Sbjct: 134 LNTPLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAI 193

Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             +                     FINN   K++        KA+   AG+ K  + H +
Sbjct: 194 DFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   + GA    +    G   +   + YT    + RL 
Sbjct: 254 RHSFATHILENGADLRVVQELLGHADISTTQIYTH-ISKKRLA 295


>gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1]
 gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 25/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR- 126
           +  + E+         LA N+  S+     Q +          +T     HI S +    
Sbjct: 2   ERWLDEFIHYLAVERGLAQNTLASYRIDLSQYLDHLKKQGVSSLTQADRNHILSHLYKLQ 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++  + L +++  +++ V    V+ +  +S+E PK K       + E+++    
Sbjct: 62  KDGKAPATISRHLAALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEEVENLLC 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                   G + +   E +  +G+R S+     +  ++ ++  IK    G     + L  
Sbjct: 122 QPQLSDPAGLRDKAMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERIIPLGS 181

Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             ++ +                  +  F+N   +++    F    K  A +  +NK  + 
Sbjct: 182 VAIRYIREYLERSRVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRINKPITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 HTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279


>gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
 gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 92/281 (32%), Gaps = 25/281 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  LI+EY     +  + + N+  S+              G  DY  +    +R  +   
Sbjct: 3   LDKLINEYLDCLKYERNYSNNTIASYRREIMHFKVYLVQEGISDYNDVDYLMLRGYLTKL 62

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
                  SS    L+++R  F + +++E++  NP   +E  K          +E+M    
Sbjct: 63  YDKNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMIDLL 122

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
              ++    G + +   E +  SGLRCS+     +  +  N   +    K G    V   
Sbjct: 123 DSIETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRYVPFH 182

Query: 239 DGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285
           +     L            +   G    F+N     +              K  A     
Sbjct: 183 EYARDWLVKYIDEARNNLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYDATKKIH 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   +AGA    +    G K +   + YT  +
Sbjct: 243 PHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHIS 283


>gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 295

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             LA N+  S+        +   +      ++ +T   I   +   K       +  + +
Sbjct: 16  RGLAENTIQSYRRDLLNYAKFLQNVIDIQTFKDVTRHMIVDYLFFLKEQGRAEATIARTI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRL 194
            S+R   ++ +R++    +P + ++ PK      +  + E+++   +         + R 
Sbjct: 76  ASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVEALLTISGQDHLSIRNRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248
             E L  +G+R S+     +     ++  ++          + L     K L +      
Sbjct: 136 MMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGNKERIIPLGQQATKALQLYLEQAR 195

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    E  F+N+  + +    F    K  A  A + K  + H +R   AT   + G
Sbjct: 196 STMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAAKIEKELTPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT      
Sbjct: 256 ADLRAVQEMLGHVDISTTQIYTHVTKTR 283


>gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 299

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---K 127
           LI ++  +     +LA N+  S+ +    +       D    +     ++  +  R    
Sbjct: 8   LIEQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQPSDLQDFLAERLEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  T+  ++   +   
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAPV 127

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 TDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L         +          F +N  Q+M    F    K  AT A ++    S H +
Sbjct: 188 YWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           LI ++  +      L+ N+R ++ S          +     I           +    + 
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQN 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +                    F +   ++M    F    K +A  AG+NKS   H +R
Sbjct: 188 VWVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297


>gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
 gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B]
          Length = 299

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127
           I ++  +      L+ N+  ++     Q      +     +            +      
Sbjct: 9   IDQFIDALWIERGLSANTLAAYRRDLRQFADFLDERGIASLKAADAGALQGFLASRLKSG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  SA +FL+++R  +++ +R+  +  +P   ++ P+      +  ++ D+++  +  +
Sbjct: 69  HSNRSAARFLSTLRGFYRYHLRENRIDRDPTQFIDSPRLGRSLPKSISEADVERLLAAPN 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E L   GLR ++     V  L  N   ++          + + +  +
Sbjct: 129 VEDPIDFRDRTMLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGDKERLIPIGEEAL 188

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +                 E  F +N   +M    F    K  A +AG+  + S H +R
Sbjct: 189 SWVQQFLAGPRQVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKRAGIEAHLSPHTLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R R+
Sbjct: 249 HAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVA-RHRM 288


>gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688]
 gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688]
          Length = 298

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 19/278 (6%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + +Y     H   L+  +R +++     ++  +G+   + +T  HIR  V +      
Sbjct: 3   DYLVQYLDHLSHERRLSPLTRENYQRDLKVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S  + L++ R  F++ +++   + NPC  +  PK         + +   Q  S   E
Sbjct: 63  GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            +   +     E    SGLR ++     +  L         T K      V +    M  
Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182

Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L      +    I +          ++++        +  A + G+N     H +R   A
Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    +      +    G   +   + YT   D   L 
Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH-LDFHHLA 279


>gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
 gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium
           TX1330]
          Length = 300

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I++Y    +    L+ N+R S+E   +Q +    +        +    +   +E     K
Sbjct: 10  INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++      
Sbjct: 70  KATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAPD 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E +  +G+R S+     +  L  ++       K      + L D  +
Sbjct: 130 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 189

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L                +   F+NN  + ++        K    +AG+    + H +R
Sbjct: 190 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT    + 
Sbjct: 250 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 288


>gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 297

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
           L+  +         L+ N+  S+      +       +     +    ++  + SR    
Sbjct: 6   LVDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKQNLSLETLEPLDLQQFLGSRLEQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +   
Sbjct: 66  YKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTPD 125

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +   
Sbjct: 126 VEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAA 185

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +    +               F +   Q+M    F    K  A  AG++    S H +
Sbjct: 186 FWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct]
          Length = 299

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 101/296 (34%), Gaps = 25/296 (8%)

Query: 70  TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
           T +  LI  +  +      LA N+R ++ +   Q              I    I   +  
Sbjct: 3   TFEHPLIDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAW 62

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R    +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++  
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
            +        G + R   E L   GLR S+     ++ +           K      V L
Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182

Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKS 285
            +  +  L                 +  F +   ++M    F    K  A  A  G + S
Sbjct: 183 GEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H +R   AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297


>gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130
           +++Y         L  N+  S+                     +    + + ++      
Sbjct: 5   LADYLHFLRVERGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAG 64

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S    +   +S+R  F++  +   +  +P L ++ PKR     +  +  ++++  +   
Sbjct: 65  KSRNTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPK 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
             +    + R   E +  +GLR S++    +  L  ++       K      + + D  +
Sbjct: 125 LNTPLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAI 184

Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             +                     FINN   K++        KA+   AG+ K  + H +
Sbjct: 185 DFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   + GA    +    G   +   + YT    + RL 
Sbjct: 245 RHSFATHILENGADLRVVQELLGHADISTTQIYTH-ISKKRLA 286


>gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO]
 gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68]
 gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
 gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68]
 gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF]
 gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071]
 gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636]
 gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679]
 gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317]
 gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039]
 gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162]
          Length = 295

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I++Y    +    L+ N+R S+E   +Q +    +        +    +   +E     K
Sbjct: 5   INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++      
Sbjct: 65  KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPD 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E +  +G+R S+     +  L  ++       K      + L D  +
Sbjct: 125 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L                +   F+NN  + ++        K    +AG+    + H +R
Sbjct: 185 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT    + 
Sbjct: 245 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 283


>gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
 gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60]
          Length = 314

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I ++R+      LA N+R ++      +   +      +     + + + +      +A
Sbjct: 23  YIQQFRQELLTRGLATNTRNAYIRDL-MLCETTCSKAITRWDASDVLACLAALYKQGKTA 81

Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
               + L+S++  F W +       NPC  ++ PK      +  ++ D+        +  
Sbjct: 82  RSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGRALPKDLSESDVDALLASPDTST 141

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL 245
             G + +  FE L   GLR S+     +  +  N      T K      V L +  + +L
Sbjct: 142 PLGMRDQAMFEVLYACGLRVSELIHLSLSEVNLNAGWLQVTGKGDKTRLVPLGEVAIDVL 201

Query: 246 AMTPIGKETFFINNDKQK---------------MNATQFSIWFKAKATKAGVN--KSAHG 288
                            +               M    F    K  A +AG+    S H 
Sbjct: 202 TDYLTLARPQLCIMKNGRESRCQAVFLTQQGGYMTRQNFWYVIKRYAKQAGIESEISPHT 261

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  A
Sbjct: 262 LRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVA 299


>gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT]
 gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336]
 gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT]
 gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126
            LI  +         L+ N+  S+      + +           +    +++ +  R   
Sbjct: 5   ALIDLFLNELWLEKGLSENTVQSYRLDLTALSQWLEPQGLSLETLDVVDLQTFLGERLTQ 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L+++R LF++  R++Y + +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTP 124

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR ++     +  +  N   ++          V + +  
Sbjct: 125 NTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              L    +   +F          F +    +M    F    K  A  A ++    S H 
Sbjct: 185 NYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQMTRQTFWHRVKYYAILAEIDTSALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
 gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088]
          Length = 298

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VESR 126
           I ++  +      L+ NS  ++ +                  R+     ++        +
Sbjct: 7   IEQFIDALWMERGLSDNSLSAYRTDLAHYQAWLDKAVAGRQLRQADGADLQRYLGLRLKQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P S  + L+ +R  +++A+RQ +   +P   VE PK      +  +++D+    S  
Sbjct: 67  GRSPRSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQDVDALLSAP 126

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
           +  S    + +   E L   GLR S+       ++  N   ++   K      V + +  
Sbjct: 127 NVESPIELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKERLVPMGEEA 186

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           +  L                 +  F +   Q M    F    K  A +AG+    S H +
Sbjct: 187 LDWLTRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIKAPLSPHTL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQR 286


>gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd
           KW20]
 gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
 gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD
 gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20]
 gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 NVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
 gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            L+ ++  +      L+ N+  S+ +   ++ +                 +  +  +   
Sbjct: 6   ALVEQFLDAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFDL 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS  + L++MR LF++  R++    +P  ++  PK      +  ++  ++      
Sbjct: 66  NYKQSSRARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALLDAP 125

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
           +       + +   E L  +GLR ++      +++      ++    G     V + +  
Sbjct: 126 NVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKERLVPMGEAA 185

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           ++ L                   FF +   + M    F    K  A  AG++    S H 
Sbjct: 186 IEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGIDGEMLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
 gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621]
          Length = 296

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 100/271 (36%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A +    + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           GA    +    G   +   + YT    + RL
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285


>gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
 gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195]
          Length = 307

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 99/281 (35%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
            ++Y +      +++  +  ++ +     +    +       K+    +R  + S     
Sbjct: 5   FNKYLEYLTVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDKVDRYILRDYMSSLIEKG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
               S  + L+++R  +++ +R+  +  NP L+   P+         T  ++ +      
Sbjct: 65  IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPD 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               +G + +   E L  SGLR S+  +  +++L  +   I+          V +    +
Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAI 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           + +                    F+N +  +++A  F       A +AG+ K    H +R
Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
              AT   D GA    +    G   +   + YT     + R
Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285


>gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus
           succinogenes 130Z]
 gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 90/282 (31%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             L+  +         L+ N+  S+      +                +  +        
Sbjct: 4   SALVELFLNDIWLEKGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAVDLQSFLGQRVE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S  + L++MR LF++  R+ Y   +P  ++  PK  T   +  T++ +    S 
Sbjct: 64  AGYKATSTARLLSAMRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQVNDLLSV 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQKTG 230
            S       + +   E L  +GLR ++     + ++           + N   I      
Sbjct: 124 PSTDVPLELRDKAMLELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIVPMGEE 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               V     + + + +     +  F +    +M    F    K  A  A ++    S H
Sbjct: 184 AAYWVGEFIRYGRAMLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGDSLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 298

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 109/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+ +R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHARHHPR 297


>gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
 gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148]
          Length = 298

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTP 130
           I  Y  +      L+ N+  S+     Q            +       +++ + +R    
Sbjct: 8   IERYIDAMWMEKGLSDNTLSSYRRDLRQFNDWLAKSKKSSVISTDRAELQAYLGARLQQG 67

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  +F++  R  +K+ +R+  + ++P L V+ PK      R  ++ D+ +      
Sbjct: 68  QSQRSTARFMSCARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDKLLDAPD 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E L   GLR S+     +  +  N   ++          V + +  +
Sbjct: 128 LDIALEYRDRTMLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSKERLVPMGEEAL 187

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
             L              I  +  F +   ++M    F    K  A +AG+    S H +R
Sbjct: 188 AWLQGYLAGPRAELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKRAGIKQNLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A + 
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQR 286


>gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
 gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens
           ATCC 49725]
          Length = 296

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 23/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127
           + +   +         ++ N+  ++     + +         D R++T   + + ++  +
Sbjct: 5   EDIAQTWLNHLAVERGVSANTLSNYRRDIRRYVDWLAVNEVQDLRQVTRPMVEAYLKDLR 64

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            T   SSA + L   R L K+AV +  +  +    V  P          + +++ Q    
Sbjct: 65  ETMAVSSANRALIVARGLHKFAVAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLIEA 124

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    + R   E L  +G R S+     V  +      +    K      V L   
Sbjct: 125 TPTETPVDLRDRALLEVLYGTGARISEVISLNVDDVATGDDVLVLHGKGDKERLVPLGSH 184

Query: 241 FMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             + +    +              F+N     ++        K  A ++ ++KS   H +
Sbjct: 185 ARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 245 RHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286


>gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 294

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 108/280 (38%), Gaps = 21/280 (7%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
           K ++ ++        +L++N+  S+E+     ++   + +   +  K          ++ 
Sbjct: 4   KEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNLKE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + ++ +S  + L+S++  F++ +    +  +P   ++ PK      +    +++++  S 
Sbjct: 64  KAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSV 123

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
             E     +     E +  SGLR S+  R  +  +      I+ +        V +    
Sbjct: 124 MLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRS 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
           +  +                 E  F+NN  Q M   +F    KA    AGVN + H +R 
Sbjct: 184 IDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPHMIRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             AT   + GA    L    G   +   + YTK + DR+R
Sbjct: 244 SFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLR 283


>gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
 gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910]
          Length = 304

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV 123
            T    I ++     +  + + N+  ++     ++         +     I  ++++  +
Sbjct: 1   MTWDEKIKDFEIFLRFERNFSENTLDAYVRDIKKLKDYAEEDLENVGPDSIAYENLQEYI 60

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +K +  S  ++++S++  FK+ +  EY   NP   +E PK         +  D+ 
Sbjct: 61  FNLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDIN 120

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
           +  +     +    + +   E L   GLR S+     + ++     +     K      V
Sbjct: 121 KIIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFV 180

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK 284
            L D    LL        +    N K             M+     +  K    KAGVNK
Sbjct: 181 PLADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNK 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT     GA    +    G  ++   E YT 
Sbjct: 241 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTH 282


>gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103]
 gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 25/289 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126
             L  ++  +     +LA N+  S+      +             ++   ++  +  R  
Sbjct: 4   SELTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHGLTLTTLSAPDLQQFLAERLE 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS+ + L++MR LF++  R++    +P   +  PK      +  ++  + +    
Sbjct: 64  GGYKASSSARLLSAMRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQA 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 124 PDVNVPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         +          F +N  Q+M    F    K  A  AG++    S H
Sbjct: 184 AVHWLEYYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
            +R   AT   + GA    +    G   +   + YT  A +R+RL  + 
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 292


>gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 272

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 14/271 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             I  +       S + N+   +                 ++    I   +         
Sbjct: 2   DYIQIFLDEKRLSS-SPNTIKQYGLILHNFQEFC-SKPLDQVNRHEIIRYLNHLMFEQNR 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +     ++ ++  + + V  EY+  NP   +   K   +     T+++M+      + 
Sbjct: 60  SKAYVSNIMSIIKSFYSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRA-LIETAL 118

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +  L  + L  +G+R S+      Q +  +        K      V +PD     L  
Sbjct: 119 DPRDNLIVKMLYATGVRVSELVNIKKQDIDLDRNTIKVFGKGAKERIVLVPDVLKAQLET 178

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
              G        D    N        KA A +AG+NK  + H +R   AT     G    
Sbjct: 179 YCAGFPEGQKLFDL---NIRTVERDIKALAVRAGINKKVTPHKLRHSFATHMLQNGGNVV 235

Query: 306 ELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
            +    G  +++  + YT    D ++    +
Sbjct: 236 AIQKLLGHTSLNTTQIYTHYSVDELKDMYAH 266


>gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 310

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 22/277 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKIT----TKHI 119
             T + L+  + +     +L  ++   + S  +  I+   +        + T     ++I
Sbjct: 11  EYTFEELLEIFIEDCELRNLREHTIKYYRSELNAFIKLLKEQEIELRVSEWTGETIKRNI 70

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              ++ +     S    L ++R  F +   +  +  NP   ++  K +   +  +  + +
Sbjct: 71  IMYMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQI 130

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233
           +            G +       LL +G+R ++        +      I+ + T      
Sbjct: 131 KALFKACDLRTFVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFER 190

Query: 234 TVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
            V + D  +  L         +  +  FI  D   ++  Q     K    KAG+     S
Sbjct: 191 FVPIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCS 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H  R   A +    GA A +L A  G  +++  + Y
Sbjct: 251 PHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVY 287


>gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittEE]
 gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           6P18H1]
 gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127]
 gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct]
 gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 292

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 335

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 140/330 (42%), Gaps = 14/330 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSP 64
           P++ + + R G+  + +R+G  + I L     +P +     AY +       +     +P
Sbjct: 5   PYL-RSKLRRGRWFHTYRRGD-KEISLGVHGLHPTDPRVFAAYCAEHARWEHRPPETATP 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +    T  W +  Y  S +W  L   +  +R + ++   + +R  G+     IT + I +
Sbjct: 63  KS--GTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIEN 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                      A+    ++R +F+   R  ++  NP + +E  +  +  +     +D+  
Sbjct: 120 --ALYAKGGHGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAA 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F   W  G+  RL F+  LY+G   +D    G  +++ N+      KTG    V +    
Sbjct: 178 FIKRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPEL 237

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
             ++A TP    TF ++  ++          F+  A  AG+    HG+RK      A+ G
Sbjct: 238 RAVIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENG 297

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
            T H++ A  G  T+ + E YT+ ADR ++
Sbjct: 298 KTVHQIAAMAGHLTLKEVERYTRAADREQI 327


>gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
 gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755]
          Length = 296

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+R S++    Q +         +   I    + S ++S +      ++ I+ ++
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           S+R   ++  ++ +   +P   ++ PK++ +     + ++    ++   +    G + R 
Sbjct: 76  SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242
             E +  +GLR S+     +  L  ++     T K      V                  
Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   + 
Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT    + 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284


>gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661]
 gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661]
          Length = 297

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI ++  +     +LA N+  S+      +                +  +   +    
Sbjct: 4   SDLIEQFLDALWIERNLAENTVASYRLDLLSLAGWLQHNESNLLRVDAVDLQGFLAERVE 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  + +    
Sbjct: 64  GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQIDRLLQA 123

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR ++     + ++      ++          V L + 
Sbjct: 124 PSVEQPIELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  +         +          F ++  Q+M    F    K  AT AG++    S H
Sbjct: 184 AVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGIDSAKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1]
 gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD
 gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1]
          Length = 300

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           LI  +         L+ N+  ++ +      R         R +    +R+ +  R   +
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQ 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + ++ + ++ +P   +E PK         ++  + +  +  +
Sbjct: 70  FARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------KTG 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAI 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   L     +LL             +         F    K  A++AG+    S H 
Sbjct: 190 TEVEHYLTSARHELLGHIQSDVVFPSKRSQMM--TRQTFWHRIKLYASRAGIETELSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
 gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451]
 gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223]
          Length = 302

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L+ ++  +      LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYRLDFISFSGLQEYQSWLSEQN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
             +    + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAI 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  A ++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
 gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952]
          Length = 296

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 25/280 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKH-- 128
           I +Y         L++N+R S+E    Q              +I    I + +E  K   
Sbjct: 5   IEDYLHFLTIERGLSLNTRSSYERDLKQYYTFVQTKQITSWQQIDRYTILAFLEQLKKEN 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFK 183
            + ++  + ++S+R   ++  ++ +   +P   ++ PK+  +     +    +  +    
Sbjct: 65  KSTATITRMISSLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLIDTPD 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242
           +    G + R   E +  +GLR S+  +  +  +  N+       K      V L D  +
Sbjct: 125 TRKILGIRDRAILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKERIVPLGDMAI 184

Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             L +               +   F+N+  +K+         K     AG++K+   H +
Sbjct: 185 HWLEVYLSDARPILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAGIHKTVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT    + 
Sbjct: 245 RHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 284


>gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 306

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           + T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHQKTALPQWTSDDIADVLIELTKAGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++         +
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R  FE L   GLR S+     ++ +      ++          V L     + +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQFACEWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 304

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121
            ++  T+  ++  Y +      +L+ N+  ++ +    ++           ++  +H+ +
Sbjct: 2   ERENKTVDNMVKAYMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHGLKVEELKLEHLDN 61

Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              S       P S  + L+ +R  FK+ +   ++  +P   +  P  +       +  +
Sbjct: 62  FSASLHDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
           + + ++       EG + R   E L   GLR S+     + +L      ++         
Sbjct: 122 VDRLEASIDLSKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN 283
            V +    +  L      +    I          N     +  T   I  K +A  AG+ 
Sbjct: 182 LVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGIT 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K+   H +R   AT   + GA    + A  G + +   E YT 
Sbjct: 242 KTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284


>gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 299

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128
           I ++  +     +LA N+ +S+      ++      +        +  +   +      +
Sbjct: 9   IEQFLDALWLERNLAENTLVSYRLDLQALVAWLNHQNITLLQAQALDLQAFLAERVDGGY 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR LF++  R++  A +P   +  PK      +  ++  +         
Sbjct: 69  KATSSARLLSAMRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQIDALLKAPCV 128

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 129 DQPIELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVY 188

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 189 WIENYLEHGRPWLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHVLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20]
 gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20]
          Length = 317

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 27/313 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +    S  K+  TL  +I +Y +       L+ N+  ++++   +++          + T
Sbjct: 2   KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59

Query: 117 -----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                +H  SG+      P S  + L+ ++  F + V  +Y+  +P   +E PK   +  
Sbjct: 60  TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLP 119

Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
              T E++ +  S    G+    + R   E L   GLR S+ C   +  L  +  F    
Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKA 275
            K      V +    +K +    + +   +                + ++        K 
Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A KAG+ K  S H  R   AT   + GA    + +  G +++   E YT   DR RL  
Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRLRS 298

Query: 334 KNSRRISSVVDSD 346
           +        +   
Sbjct: 299 EIIEHHPRNIKYR 311


>gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
          Length = 284

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+ N+R S+E   +Q +    +        +    +   +E     K   ++  + ++
Sbjct: 5   RGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEKKATATVTRMIS 64

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S+R   ++  ++     +P   ++ PK+  +     T  ++++           G + R 
Sbjct: 65  SLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIRDRA 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E +  +G+R S+     +  L  ++       K      + L D  ++ L        
Sbjct: 125 ILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLDEAR 184

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                   +   F+NN  + ++        K    +AG+    + H +R   AT   + G
Sbjct: 185 PLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLLENG 244

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT    + 
Sbjct: 245 ADLRTVQELLGHADISTTQIYTHITKKR 272


>gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
 gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342]
 gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55]
          Length = 298

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128
           I ++  +     +LA N+  ++      ++            + +  +++ +  R    +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + L+++R  F+   R++    +P   +  PK      +  ++  +++       
Sbjct: 68  KATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLV 127

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVM 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2]
 gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2]
          Length = 404

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/384 (10%), Positives = 104/384 (27%), Gaps = 57/384 (14%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF  G   G+R ++     +T   A  S                +   +L 
Sbjct: 22  RKRGKKWYYYFDAGIVDGKRKKVERVGGNTKKEAEKSLRDAINEYENAGIVFDETNMSLS 81

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + K     +   N++ S+ +   + I  + G    + I    I+  + ++     
Sbjct: 82  DYLNFWYKEYVLLNCKYNTQESYRNLIENHIEPRLGKCKLKSINPAIIQEFLNNKSKETY 141

Query: 132 SAI-----QFLTSMRVLF-------------KWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +            ++ ++                +++  V            +     + 
Sbjct: 142 TQNGEEKHYTKGVLKAIYVVLNAALKSAVYPYKLIKENPVQYASIPKNVLKVKNESDNKT 201

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T ++  +    + + +   +      ++G+R  +       ++  +   IK +K     
Sbjct: 202 ITLDEFNKILEIYPKNTNIYIPLLIGFHTGMRKGEILGLCWDNVDLDNNIIKVRKNLIKR 261

Query: 234 T---------------------------------VELPDGFMKLLAMTPIGKETFFINND 260
                                              +                +      D
Sbjct: 262 KVSEFELASPKTKTSIRDIKIGDTLSRILKEEKLNQKKQKIKIGKWYKETEYDWVCRKKD 321

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +N        +    K  +N + H +R   AT+  + GA    +    G   +    
Sbjct: 322 GSFVNHNNIDAAIRTINKKLNINFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTTM 381

Query: 321 -TYTKGADRIRLGIKNSRRISSVV 343
            TY+      ++  +    +  ++
Sbjct: 382 DTYSHVTS--KMESETIDILEGIL 403


>gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 372

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 109/356 (30%), Gaps = 48/356 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  ++  +            ++ +     K E          TL   ++++ ++     L
Sbjct: 24  GKRKQKWISGFKTKKEAEKALAEIIAKIEKNEL----ELTNLTLGQFLNKWYETHCELKL 79

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143
           A  +  S++   +       GD +  K+    I++     K    + ++       ++  
Sbjct: 80  APKTLKSYKELIELYFKPYLGDIELTKLKPVMIQNYYNKLKELGLSDTTINYHHRVLKSA 139

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            K AV  + ++ NPC  VE PK+    I  W+  D+++ K    + +   L F   LY+G
Sbjct: 140 LKKAVVWQLISKNPCDYVEPPKKNKNEITVWSINDVKKAKE-IFKDTPIYLHFMLALYTG 198

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA- 246
           +R  + C    + +  N  +   ++                      + L    +++L  
Sbjct: 199 MRIGEICGLKWEDIDFNNKTCTVKRQYQQVGGKEIIKEPKSETSIRVIPLHSDVIEVLKE 258

Query: 247 ---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289
                               +    +  D +       S  F               H +
Sbjct: 259 EKKKQLQNRMLLGEKYNKKYEGYISVWEDGRMKTPEYVSKKFSKILKAYPELPQIRFHDL 318

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRRISSVV 343
           R   A+    AG     +    G   +      Y+    D  +   +  +++   +
Sbjct: 319 RHSCASFLVQAGVPMKVVSEILGHSQIGITMDLYSHVLLDSKK---EAIKKLEEYL 371


>gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
 gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittHH]
          Length = 297

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFILYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
 gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01]
 gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B]
 gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A]
 gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C]
 gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04]
 gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082]
          Length = 300

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I++Y    +    L+ N+R S+E   +Q +    +        +    +   +E     K
Sbjct: 10  INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + ++S+R   ++  ++     +P   ++ PK+  +     T  ++++      
Sbjct: 70  KATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPD 129

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                G + R   E +  +G+R S+     +  L  ++       K      + L D  +
Sbjct: 130 TTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAI 189

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L                +   F+NN  + ++        K    +AG+    + H +R
Sbjct: 190 QWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT    + 
Sbjct: 250 HSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR 288


>gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           LI ++  +      L+ N+R ++ S          +     I           +    + 
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQN 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +                    F +   ++M    F    K +A  AG+NKS   H +R
Sbjct: 188 VWVERYVRDARHELLGGRPSDALFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297


>gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittGG]
 gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittII]
 gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG]
 gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae
           R2866]
          Length = 297

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126
            LI  +         L+ N+  S+      +       D     +   H++  +  R   
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVHLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L+++R LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 316

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 111/316 (35%), Gaps = 24/316 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GD 108
            P++       K+  T + ++ +YR+      SL+ N+  ++ +  D+++        G 
Sbjct: 1   MPRKNSAQRYEKEMKTYEKILLKYRQYLKLERSLSGNTIDAYLTDLDKLLAYLTLEGIGI 60

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D      ++  +G+      P S  + L+ +R  F++    +Y+  +P   +E P+   
Sbjct: 61  TDVTLQDLENFSAGLHDIGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGK 120

Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223
                 T E++            EG + R   E L   GLR S+ C   +  L  +  F 
Sbjct: 121 HLPDVLTVEEIDALIGAIDETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFI 180

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWF 273
               K      V +    +  L                ++  FI+   + ++        
Sbjct: 181 KVEGKGSKQRLVPISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHII 240

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A + G+ K+   H  R   AT   + GA    + A  G +++   E YT   DR  L
Sbjct: 241 KELAERIGLKKTISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTH-IDRSML 299

Query: 332 GIKNSRRISSVVDSDD 347
             +             
Sbjct: 300 RQEIIEHHPRNKKKRF 315


>gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
 gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1]
          Length = 301

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 26/291 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK 127
             + EY++        +  +  ++E      I          +   +   H+   ++   
Sbjct: 5   DALKEYKQYMIVEKGYSRYTVENYERDILHFINFIHKKYEVDNVNNVIKDHMYHYLKDLH 64

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    SS  + +TS++  + + V++  +  N   S E  K+        T  ++ Q    
Sbjct: 65  NHLKASSVDRHMTSLKQFYIFLVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLLDS 124

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240
            + G     + R   E L  SGLR S+ C   +Q++  +   +K   K      V + + 
Sbjct: 125 IAVGDPVSARNRCMVEVLYASGLRVSEMCFLTLQNVNIHKGFVKCIGKRNKERIVPMNEN 184

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
              LL                      N   Q +    F    +    K+G+ K  + H 
Sbjct: 185 CCLLLKEYIEEYRPQLCEEVSSQYLFINKRGQPIQRDDFYHILENIVKKSGLKKHVTPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +R   AT   +  A    +    G   +     YT  ++     I+  R++
Sbjct: 245 LRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNK--AIEEYRKL 293


>gi|294840865|ref|ZP_06785548.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059]
 gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +   +ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                     F                M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2]
 gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2]
          Length = 279

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 101/283 (35%), Gaps = 18/283 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              I E+         + N+   +  Y  + + +   +           + ++ + ++  
Sbjct: 3   SETIEEFATYLELEGKSKNTIRMYTYYLSKFLEE--GYSPTARDALRFLARLKKKGYSIR 60

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    + +++  FK+              ++ PK      R  T+E++++      +  +
Sbjct: 61  SINLIVHALKAYFKFEG-----LETEAEKLKTPKIPKTLPRSLTEEEIKKVIEAA-KNLR 114

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTP 249
            RL    L  +GLR S+ C   ++ +        ++  K G    + L +  ++ +    
Sbjct: 115 DRLILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGGKGGKDRIIPLSETLLQEIQRYL 174

Query: 250 IGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
             ++              K K++        K    +AG+N + H +R   AT   + G 
Sbjct: 175 KTRKDNSPYLFVEIRRGKKDKLSPKTVWWIVKKYGEEAGINLTPHQLRHSFATHMLERGI 234

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344
               +    G  ++   + YTK   +  +  ++ +R I +++ 
Sbjct: 235 DIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEKARLIETIIG 277


>gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
 gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium
           SWAT-3]
          Length = 304

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
           L+ ++  +      L+ N+ +S+ +   +++      ++    I+   ++          
Sbjct: 13  LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDAD 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 73  FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQVDALLDAPD 132

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 193 DWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAGIDTELLSPHVL 252

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292


>gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223]
 gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223]
          Length = 300

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R  G          +   +   +    + 
Sbjct: 10  LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQD 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + +  +P   VE PK         ++  + +  S  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 190 TEVENYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
 gi|294838164|ref|ZP_06782847.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113]
 gi|294857848|ref|ZP_06795617.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150]
 gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057]
 gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294]
 gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606]
          Length = 306

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       D   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK   +  +  T+ D+++     
Sbjct: 61  GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+     +  +  NI       K      V + +  
Sbjct: 121 DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K  A  AG+  + S H +
Sbjct: 181 LEYLQKYFAEARRSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
 gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 94/287 (32%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+      + +              I  +   +      
Sbjct: 16  LIEQFLDTIWLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSIDLQSFLAERIEGG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++   +   
Sbjct: 76  YKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQVEDLLNAPA 135

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+        +      I+          + L +  +
Sbjct: 136 TEDPLELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKERLIPLGEEAI 195

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +    KM    F    K  A  A ++    S H +
Sbjct: 196 YWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANIDSEALSPHVL 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R+R+  + 
Sbjct: 256 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQ 302


>gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 294

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS-- 131
            Y +     S++ ++  S++    Q ++     G+ D   +T   +   ++  +      
Sbjct: 10  AYLRDQ--KSVSASTLQSYQRDLKQFVQYLQQRGNEDPADVTAAELEMYLDVLRGKGRSE 67

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            +  +F  S+R  F++ + +  ++ NP L +   + K       T  +      Q     
Sbjct: 68  ATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEVDLLFAQPVCND 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +G + +   E L  +G+R S+     V  +   + ++  +      ++ + +  ++ ++
Sbjct: 128 FKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGPEKNRSIPIYNEAVQSIS 187

Query: 247 MTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           +      +                 ++++   F    K+ A +AG+ K  + H +R   A
Sbjct: 188 LYLDNARSTLRMLHGEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPHTLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
               + GA    +    G   +   + Y
Sbjct: 248 AHLLENGADLKSIQEMLGHSDISSTQIY 275


>gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida
           LFI1238]
 gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238]
          Length = 300

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            LI  +  +      L+ N+  S+ +   +++    +          +     ++ +  +
Sbjct: 8   ALIERFLDTMWMERGLSENTLSSYRNDLMKLLNWLDENHYKCASISAMGLNEYQAYLVDK 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++  +S  + L+++R  F++  R++    +P   +  PK      +  ++E +       
Sbjct: 68  QYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQVNDLLEAP 127

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + R   E L  +GLR ++     +++L      ++          V + +  
Sbjct: 128 NVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKERLVPMGENA 187

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +        +           F +   ++M    F    K  A  AG++    S H 
Sbjct: 188 VYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGIDTDKLSPHV 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 288


>gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 374

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 112/360 (31%), Gaps = 47/360 (13%)

Query: 17  RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK  Y         G  ++  L              AL G         +   +  T 
Sbjct: 7   KKGKKYYIVVDIGVVNGKRKQKWLGGFDTKAEAEE---ALPGILNIIYQNKNKLLERKTF 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126
             L+  +  +     +++++  S+ S     I    GD++  K+T   ++   +     +
Sbjct: 64  GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDYELSKLTPMDLQKYYQHIMTEK 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + + A+     +     +AV+ + +  NP   V+ PK++      W +E +++    +
Sbjct: 124 GLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKTLEIF 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229
            E +  R+     +Y+G+R  +        +                        K +  
Sbjct: 184 KE-TNIRIPVLLAVYTGMRIGEITALKWDDVNLEQGYITVSKTLMKINGQTYIKEKAENK 242

Query: 230 GTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275
            +   V + +  ++ L                    +       D +  +    +  F+ 
Sbjct: 243 NSYRIVAISNQVVEELKEWKAKQEKLKKELKELYHDEGFVCTFEDGRVQDPKYITKVFQK 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
              K G+ K   H +R   A++    G     +    G  TV      Y+   D  R  +
Sbjct: 303 TIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTVTTTLNIYSHVFDEKRRKV 362


>gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           86-028NP]
 gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP]
          Length = 297

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
 gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641]
          Length = 299

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +   +   G    R      +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 298

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126
            LI ++  +     +LA N+  ++      ++                  + +       
Sbjct: 6   ALIEQFLDALWLEKNLAQNTLSAYRRDLTMLVEWLAHRGLSLESAQSDDLQALLGERMEG 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  +++     
Sbjct: 66  GYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQSP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 126 AVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  L         +          F +   Q+M    F    K  AT AG++    S H 
Sbjct: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1]
 gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC
 gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1]
          Length = 313

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 97/276 (35%), Gaps = 26/276 (9%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV---ESRK 127
           +  + +  A   +LA N+  ++ +  DQ           ++R ++   I S +     R+
Sbjct: 5   VEAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREWRDVSHDDILSFMLYLRERR 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  S+  + + +++  F +      V  +P   ++ PK   +  R  T   + +      
Sbjct: 65  YASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELLELPL 124

Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                   + +   E L  +G+R S+     +  +     +++       +         
Sbjct: 125 RSPTPERIRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVRVLPINGSA 184

Query: 235 -----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
                    +   +L   +    +  F+N+  +++    F +  K  A + G+   + H 
Sbjct: 185 ATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMGLGELTPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A    +AGA    +    G  ++   + YT 
Sbjct: 245 LRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTH 280


>gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           SBW25]
 gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R ++ S          + +   I    + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELINAGRELILDHLAWRLEQN 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ +A++P L VE P+      +  ++ D+    +   
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADVDALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             +                    F +   ++M    F    K +A  AG+ K  S H +R
Sbjct: 188 VWVERYMRDARGELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAKHHPR 297


>gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
 gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix]
          Length = 301

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128
           ++  +         L+ ++  ++    + + R            ++  + + V +R    
Sbjct: 10  VLDRFLDELWAVEGLSDHTLAAYRRDLEALARWLHGRGVALEAASSADLLAFVSARMQAG 69

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FK 183
             P S  + L+S+R  +++ V Q     +P   +E P+         ++  +       +
Sbjct: 70  ARPKSITRALSSIRRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAAPE 129

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGT 231
                G + R   E +  +GLR S+        + +    ++              +   
Sbjct: 130 LHTEVGLRDRAMLELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLVPLGEEAA 189

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                        L       +T F+    + +    F    K  A  AG+    S H +
Sbjct: 190 HWLARYLREARGALMSGHPPVDTVFVTRRGRGLTRQAFWYRIKHYAQVAGIEVPLSPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   D GA    +    G  ++   + YT  A R RL
Sbjct: 250 RHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVA-RARL 290


>gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
 gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR--- 126
            L+ ++  +     +LA N+  ++      ++            +    +++ +  R   
Sbjct: 6   ALVEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLSRRKLSLETVQHDDLQALLGERVDG 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  +++     
Sbjct: 66  GYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQSP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 126 AVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  L         +          F +   Q+M    F    K  AT AG++    S H 
Sbjct: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13]
 gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13]
          Length = 295

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 94/271 (34%), Gaps = 20/271 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            L+ ++     +   L+  +  ++++  +++I    D    +  ++ IR  +     +  
Sbjct: 4   ELLDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLTEFNSEDIRLSLSKLHASGL 62

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SF 185
              S  + L+S R  F +  + + +  +P   ++ PK + +  +  + + +         
Sbjct: 63  SGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQT 122

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
               ++ R   EF   SGLR S+     +  +  N  +     K      V L    ++ 
Sbjct: 123 NFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIEA 182

Query: 245 LAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           L +  + +            F+N   +K+ A       K  A K  +      H +R   
Sbjct: 183 LDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSF 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +      +    G   +   + YT 
Sbjct: 243 ASHVLQSSQDLRAVQELLGHSNISTTQIYTH 273


>gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
 gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101]
          Length = 298

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 292

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       +   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK      +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+        +  N        K      V + +  
Sbjct: 121 DLTDDIGIRDKAMLELMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K+ A  AG+  + S H +
Sbjct: 181 LEYLHKYFEESRESLAKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 25/280 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRSG 122
             L+ ++        + + N+  S++   +Q I       G  D+ K+        I   
Sbjct: 2   DKLLEKFLYYQDVVLNKSFNTVKSYKKDLEQFIEYLKNNEGIEDFNKVEIFTFRSFIAYL 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +    S  + L+++R  FK+ +  +Y+  N  + +  PK +       TKED+ + 
Sbjct: 62  NVELQVNKRSINRKLSAIRTFFKYLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKL 121

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
           +S        G + R   E L  SGLR  +        +      ++             
Sbjct: 122 RSVIKLEKITGLRDRAIIELLYSSGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFF 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNK--SA 286
            +   K ++     K+  + N +K          K+++          + KAG+NK  + 
Sbjct: 182 SNNAQKYISEYIERKKEEYKNYNKDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H  R   AT   + G     +    G  ++   + YT  +
Sbjct: 242 HIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHIS 281


>gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
 gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22]
          Length = 298

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128
           I ++  +     +LA N+  ++      ++            + +  +++ +  R    +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + ++++R  F+   R++    +P   +  PK      +  ++  +++       
Sbjct: 68  KATSTARLISAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLV 127

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVM 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLAHRKASLETAQSEDLQALLAERMDGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+++R LF+   R++    +P  ++  PK      +  ++  +++       
Sbjct: 68  KATSTARLLSAVRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLLQAPVV 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I]
 gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I]
          Length = 278

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 85/257 (33%), Gaps = 9/257 (3%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHT 129
             ++ +       S +  +   +    ++  + +G      +  + +R     +  +  +
Sbjct: 8   DYVAVFIDEKRLSS-SPGTIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++    L+ ++  + + +   YV+ NP   +   K   +     T  +M          
Sbjct: 67  KTTVANVLSVLKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDTA-ID 125

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           ++ R+    L  +G+R S+      + +  +  +IK           +      ++    
Sbjct: 126 TRDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFG--KGAKERIVLVPETVVKEMY 183

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
               +   ++    +         K  A +A +NK  + H +R   AT     G     +
Sbjct: 184 DYAASLSNDDRLFNLTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHMLQNGGNVVAI 243

Query: 308 MATYGWKTVDQAETYTK 324
               G  +++  + YT 
Sbjct: 244 QKLLGHSSLNTTQIYTH 260


>gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus
           WK1]
 gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 97/271 (35%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + ++          +  +T  HI      ++ +  +P +  + L
Sbjct: 18  RNLAHNTIVSYERDLKKYVQYLQKVEQLCHWNDVTRFHIMQFLKFLKEKGSSPKTIARHL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++ V  +P + +E P+   +     +  +++       + +    + +
Sbjct: 78  ASVRSFHQFLLREKAVDQDPTVHIETPQLPRKLPNVLSMAEVEALLEAPKQNTPFSIRDK 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+  +  +  +   +  I+          V +     + L       
Sbjct: 138 AMLELLYATGIRVSELIQLNISDVHLTMGFIRCYGKGRKERIVPIGKMATEALKRYIEQG 197

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+  +++         K  A +A + K  + H +R   AT   
Sbjct: 198 RPELLQRKKGTTDALFLNHHGERLTRQGCWKILKRLAQEANIQKQLTPHTLRHSFATHLL 257

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTHVTKTR 288


>gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2]
 gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2]
          Length = 297

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 92/274 (33%), Gaps = 23/274 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
           +Y +      L+ N+  +++    +     G  D  + + + +   +         PSS 
Sbjct: 14  QYLRLNE--GLSDNTLQAYQRDLKKTQLALGKTDLSQASREQLEDYLFQLHVDQVNPSSI 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG 189
            + L++++  + + +    +  +P   ++ P+   +     ++  ++   +        G
Sbjct: 72  ARCLSALKRFYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQVEALLNAPDLTTPLG 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            + +   E +  SGLR S+      + L  +      T K      V +    ++ +   
Sbjct: 132 VRDKAILELMYASGLRVSELVNLPYEQLNLSAGLVQVTGKGNKERIVPIGQMAIEAIEAY 191

Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                           T F++   + M         K  A +A +    S HG+R   AT
Sbjct: 192 LKSARPALVGKQKWVSTLFVSRIGRTMTRQTLWHRIKNLALQADIRSQLSPHGLRHAFAT 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + GA    +    G   +   + YT  A   
Sbjct: 252 HLINHGADLRTVQLLLGHSDLSTTQIYTHVAKER 285


>gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+R S++    Q +         +   I    + S ++S +      ++ I+ ++
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQDAGKSSATVIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           S+R   ++  ++     +P   ++ PK++ +     + ++    ++   +    G + R 
Sbjct: 76  SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242
             E +  +GLR S+     +  L  ++     T K      V                  
Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   + 
Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT    + 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284


>gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700]
          Length = 297

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126
            L+  +         L+ N+  S+      +           +T   +           +
Sbjct: 5   ALMDLFINEYWIEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQ 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  +++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARLLSAMRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQ 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++    G   +  N   ++          V + +  
Sbjct: 125 SLEQPVELRDKAMLELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +    +M    F    K  A +A ++    S H 
Sbjct: 185 THWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDMLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus
           weihenstephanensis KBAB4]
 gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
 gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4]
 gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603]
 gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048]
          Length = 296

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A +    + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
 gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 85/273 (31%), Gaps = 21/273 (7%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
             I  Y +       L+ NS   + S  +       D        T++ +   +   +  
Sbjct: 13  QWIDRYLEYLLIERGLSENSLSGYLSDLESFQSFLEDRSAKIEDATSQTLLLYLTYLRSK 72

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
               +S  + L+S+R  F +   + ++  +P   +E PK   +     + E++ +  +  
Sbjct: 73  ALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEIGRMLALP 132

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241
                 G + R   E L  +G+R S+     ++         I   K      V +    
Sbjct: 133 KLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLVPIHYVA 192

Query: 242 MKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRK 291
              L          F    K                    K  A +AG+ +S   H  R 
Sbjct: 193 QNFLNQYIKDWRPAFNPKVKNIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSISPHTFRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   D GA    +    G   ++  E YT 
Sbjct: 253 SFATHLLDGGADLRTVQLLLGHSDINATEIYTH 285


>gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18]
 gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18]
          Length = 292

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 90/267 (33%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
              A N+  ++     + +   G+ +  +I    +   +   K     P S  + L+++R
Sbjct: 16  RGAAANTVAAYSRDLTRYLAYLGEREPDQIRPSDVTGYLGKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197
           +L ++ VR+ +  +NP   VE PK   +     +  +++          +   + +   E
Sbjct: 76  MLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREVEALLASPLDTGAIELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            L  +GLR S+        +       +   K      + + +   + +           
Sbjct: 136 LLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLIPMGESACRAVGEYLEKARQEL 195

Query: 257 INNDKQK----------MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
           +                M    F    K +A +AGV    S H +R   AT   + GA  
Sbjct: 196 LKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSGISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R RL
Sbjct: 256 RSVQIMLGHADLSTTQIYTHVT-RERL 281


>gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10]
 gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua]
 gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516]
 gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides
           F]
 gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis YPIII]
 gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92]
 gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD
 gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10]
 gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001]
 gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516]
 gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua]
 gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92]
 gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F]
 gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758]
 gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola]
 gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII]
 gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+]
 gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27]
 gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 299

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           LI ++  +     +LA N+  S+      ++      + D  + + + ++S +  R    
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALVGWLTHHNSDLLRASPQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
 gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1]
          Length = 298

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128
           I ++  +     +LA N+  ++      +            T +     ++ +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLSAYRRDLTMVAAWLQHRGLSLETAQPGDLQNLLAERVDGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR LF+   R++    +P   +  PK      +  ++  + +       
Sbjct: 68  KATSSARLLSAMRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQVDRLLQAPLV 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLENYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYARLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031]
 gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031]
          Length = 297

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +                +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20]
          Length = 296

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 96/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+R S++    Q +         +   I    + S ++S +      ++ I+ ++
Sbjct: 16  RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           S+R   ++  ++     +P   ++ PK++ +     + ++    ++   +    G + R 
Sbjct: 76  SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE-----------LPDGFM 242
             E +  +GLR S+     +  L  ++     T K      V                  
Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L      +   F+NN   +++        KA   +AG+ K  + H +R   AT   + 
Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT    + 
Sbjct: 256 GADLRTVQELLGHADISTTQIYTHITKKR 284


>gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
 gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908]
          Length = 308

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127
           LI  +         L+ N+  ++ +                   T   IR  ++    + 
Sbjct: 18  LIELFLDDLWSSRGLSSNTLSAYRTDLCHFEHYLIKSGIALCDATQGTIRDYLDVRFEKG 77

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + ++S+R  + + V Q  + ++P   ++ P+   +     ++ D+    S  +
Sbjct: 78  FARTSSARLISSLRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEADVDSLLSEPN 137

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238
                  + +   E L  +GLR ++     ++ +      ++    G       +     
Sbjct: 138 LDDPIECRDKAMLELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLVPLGEMAI 197

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 L           +++          M    F    K  A +AG+  + S H +R
Sbjct: 198 SEVESYLVAARGELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTDLSPHTLR 257

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT   + GA    +    G   +   + YT  A           R+S +     P
Sbjct: 258 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 306


>gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
 gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32]
          Length = 295

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---S 125
             +  +         L  N+  ++       +      G  D   IT   +   +     
Sbjct: 3   EYLDLFLNYLQVEKGLTKNTLEAYSRDLSVYLDFLAGQGRLDLDHITAMDVIEHLAGLKE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
           R  +P S  + L+++++  ++ + + +   NP + +E P+         +  ++      
Sbjct: 63  RGLSPRSRARALSAVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREVELLLDS 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTG 230
            +S      +     E L  +GLR S+     ++ +  +   +                 
Sbjct: 123 ARSADLNDVRDLAMLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLVPLGET 182

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
             +         ++ A      E  FI+     M    F    K +A  AG+ KS   H 
Sbjct: 183 ARLATAEYLRSARVKADRKGDCEILFISRLGDGMTRQAFWNIIKKRAAAAGIRKSISPHS 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT    R RL
Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284


>gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit
           7]
          Length = 298

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F ++   +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSSRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718]
 gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718]
          Length = 298

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQCDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 303

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 98/287 (34%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGD--FDYRKITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+      +   +   G      + I      +      
Sbjct: 12  LIEQFLDAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTIDLHSFLAERVDGG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  SS+ + L++MR LF +  R++    +P   +  PK      +  +++ ++   +   
Sbjct: 72  YKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNAPC 131

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 132 TDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEAI 191

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L                    F +N  ++M    F    K  A  AG++    S H +
Sbjct: 192 YWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTGRLSPHVL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R++L  + 
Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQ 298


>gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU]
 gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2]
          Length = 306

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +   +ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont]
          Length = 297

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126
             LI ++  +     +LA N+  S+      +             +    ++  +  R  
Sbjct: 4   SDLIEQFLDALWTERNLAQNTLASYRQDLQTLTAWLHHHERTLLSLEAADLQQFLAERIE 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++  + +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQVERLLQA 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
            +       + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 124 PATDIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         +          F +N  Q+M    F    K  AT AG++    S H
Sbjct: 184 AIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 360

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 96/320 (30%), Gaps = 26/320 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHW-GSLAVNSRISFE 96
             +            +   R   +  R +  T    +  ++          A N+  S+ 
Sbjct: 33  RGAQTSQRETEDSADTADSRPLRSGNRHQAETSAAKVARQWITYLTVERGKARNTIASYR 92

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153
                 +   G+     I    I + ++S        +S  + L+++R    +A  +  V
Sbjct: 93  RDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIV 152

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDS 209
           A +    +  P          + +++       +  S    + +   E L  +G R S+ 
Sbjct: 153 ADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLELLYGTGARISEV 212

Query: 210 CRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---- 261
               V  +     +      T K      V +     + +    +               
Sbjct: 213 LSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALF 272

Query: 262 ------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313
                 + M+        K  AT+AG+  + S H +R   AT   + GA    +    G 
Sbjct: 273 LNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGH 332

Query: 314 KTVDQAETYTK-GADRIRLG 332
            +V   + YT   AD +R  
Sbjct: 333 ASVTTTQIYTHITADSLRAM 352


>gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii]
 gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 108/334 (32%), Gaps = 16/334 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G I +      G+RIR            A M+ +     + +Y     ++  T   L+
Sbjct: 5   KRGNIWWMNIVFQGKRIRRSTGSSNRALADAIMAKVKVQLIEGQYFERAEEQSRTFAELM 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             + +       +  +  +   +  +     GD    +IT K I      R      P+S
Sbjct: 65  DRFEREHLVKLASRQTGQA---FLKRFRAFFGDRTLAEITPKLIVEYKSRRSATGVKPAS 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + LT +R  F  A R+     +  +S    ++       W  ED +         S  
Sbjct: 122 INRELTCLRKAFSLAKREWEWCRDNPVSRVSLEKGATKRDRWLMEDEEARLLDACP-SWL 180

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTPI 250
           R    F L+SG+R  +        +     +    +       TV L    M LL     
Sbjct: 181 RELVVFALHSGMRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTEKAK 240

Query: 251 GKETFFINNDK----QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
            +              +++        +    KAG+ N   H +R   AT    AG   +
Sbjct: 241 VRHIKTALVFPSLAGTRLDPNHLRRALRPAMAKAGIVNCHFHDLRHTFATRLVQAGVDLY 300

Query: 306 ELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRR 338
           ++    G K+    + Y     + +R G++   R
Sbjct: 301 KVQRLLGHKSPLMTQRYAHHYPESLRDGVEILDR 334


>gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 27/291 (9%)

Query: 65  RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRS 121
              P+TL   I  +  +      L+ ++  ++ +    + R  G       +     + +
Sbjct: 10  TAPPSTLA--IDAFLDAIWAEHGLSDHTLAAYRADLMALARWLGPRGKRVEQADRGDLLA 67

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  R      P S  + L+S+R  ++  VR      +P   ++ PK         ++ D
Sbjct: 68  YLSHRVAGGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTLSETD 127

Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           ++   +        G + R   E L  +GLR S+     V  +      ++T   G+   
Sbjct: 128 VEALLASPDTDTDLGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKGSKER 187

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                                 L       +  F+      M    F    +  A +AG+
Sbjct: 188 LVPLGEEASVWVERYLGAARPALLAGQGACDDLFVTRRGGAMTRQAFWHLLRRYAAQAGI 247

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +K  S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 297


>gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAO1]
 gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2]
 gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           LESB58]
 gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa
           PAb1]
 gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
 gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD
 gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1]
 gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719]
 gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192]
 gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58]
 gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 102/296 (34%), Gaps = 25/296 (8%)

Query: 70  TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
           TL+  LI  +  +      LA N+R ++ +   Q              I    I   +  
Sbjct: 3   TLEHPLIDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAW 62

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R    +   S  +FL+ +R  +++ +R   +A +P L V+ P+      +  ++ D++  
Sbjct: 63  RLEQGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
            +        G + R   E L   GLR S+     ++ +           K      V L
Sbjct: 123 LAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPL 182

Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKS 285
            +  +  L                 +  F +   ++M    F    K  A  A  G + S
Sbjct: 183 GEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H +R   AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHARHHPR 297


>gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
 gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKVTSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 299

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +       D      + +  +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQALDLQAFLADRIDGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +        
Sbjct: 68  YKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALLDAPS 127

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++   K      V L +  +
Sbjct: 128 IEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  ++M    F    K  A  A ++    S H +
Sbjct: 188 YWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSAKLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 105/281 (37%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39]
 gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
 gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 97/279 (34%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128
           I ++  +     +LA N+  ++      ++            + +  +++ +  R    +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATVQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98]
          Length = 296

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++          + ++T   I + ++  +    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQKVEQMKTFHEVTRMQIVNFLQHLRENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  +  +++            G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKTTSAYGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638]
 gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126
            LI ++  +     +LA N+  ++      +               +   + + +     
Sbjct: 6   ALIEQFLDALWLEKNLAENTLSAYRRDLTMLAEWLAHRGLSLEQAQRDDLQTLLAERMDG 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L++MR LF+   R++  A +P   +  PK      +  ++  + +     
Sbjct: 66  GYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQVDRLLQSP 125

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +       + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 126 TVDVPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F +   Q+M    F    K  AT AG++    S H 
Sbjct: 186 VYWVETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
 gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586]
          Length = 299

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126
            LI ++  +     +LA N+  S+ +    +       D    +     ++  +  R   
Sbjct: 7   ALIEQFLDALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQPSDLQDFLAERLEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR LF++  R++    +P   +  PK      +  T+  ++   +  
Sbjct: 67  GYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  L         +          F +N  Q+M    F    K  AT A ++    S H 
Sbjct: 187 VYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 104/349 (29%), Gaps = 26/349 (7%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KR 58
           P F+ + R+  GK  YY R        ++ R+      T   A   A    +        
Sbjct: 31  PGFIMEVRS-TGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTTMGFDP 89

Query: 59  EYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
                  +   T K  I  +Y         +           + +++   G+    +IT 
Sbjct: 90  RDEAEKNRNTPTFKEFIRDQYIPYIQVHKRS---WDQDSKMLELRVLPLWGNMKMSEITR 146

Query: 117 KHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             ++            P +  +++  ++ +F  A + + +   P   + R +      R 
Sbjct: 147 DDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKTPARHISRLEDNNCKERY 206

Query: 174 WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            + E+ ++        +        E L+ +G R S+      Q L              
Sbjct: 207 LSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELDLKQGLWTIPPERN 266

Query: 232 IITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                         +++L         +   N K       F   +      AG+     
Sbjct: 267 KAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTGGPIKHFHNTWDRVRKNAGIPDVRI 326

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           H +R   A++  ++G + +E+    G   +   + Y     D +R   +
Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLTQDTLRDATE 375


>gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+ +   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
 gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae
           PittAA]
          Length = 297

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +       D        +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 318

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 103/281 (36%), Gaps = 26/281 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137
            L+ N+  S+ +   Q++   G           +T   + + +  R       S+  + L
Sbjct: 36  GLSRNTLASYRADLMQLVEWLGRQPRTNGSLSDVTQADLLAFLSDRIGQGVKASTTCRAL 95

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193
           T ++  +++ +RQ  +  +P  +++ PK         T+ +++       +    G + R
Sbjct: 96  TCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEVEALLAAPDTRQPLGLRDR 155

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI-- 250
              E L  +GLR S+     +  ++ ++  ++   K      + L +  +  L++     
Sbjct: 156 AMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGEEALHWLSLYLQEA 215

Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+      M    F    K  A +AG+ K  S H +R   AT   + 
Sbjct: 216 RPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPHTLRHAFATHLLNH 275

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 276 GADLRVVQLLLGHSDISTTQIYTHVA-RERLKQLHARHHPR 315


>gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
 gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047]
 gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116]
          Length = 297

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126
            LI  +         L+ N+  S+      +                +  +        +
Sbjct: 5   ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +  
Sbjct: 65  GYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTP 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++          V + +  
Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
              +    +               F +   Q+M    F    K  A  A ++    S H 
Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285


>gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
 gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196]
          Length = 296

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             LA N+ +S+E      ++   +      + ++T  HI + ++  K    +  +  + +
Sbjct: 16  KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
            S+R   ++ +R+  V  +P + +E P+ + +  +  + ++++          + G + +
Sbjct: 76  ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTTKTASAFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+     ++ +   +  ++          + L     + +       
Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195

Query: 253 ETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
               +          N+   +++   F    K  A +A +    + H +R   AT   + 
Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis
           Tohama I]
 gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I]
          Length = 310

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 95/307 (30%), Gaps = 35/307 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----------D 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENLACHPGLATGAS 59

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R      ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +          +    + R   E L  +GLR S+        +  N   +
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
           +    K G    V L       +                    F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299

Query: 331 LGIKNSR 337
             +  + 
Sbjct: 300 KALHAAH 306


>gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586]
 gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586]
          Length = 302

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK--- 127
           L+ ++  +  +   LA N+  S+ +   +++       +    I+   ++          
Sbjct: 11  LVEQFLDAMWFERGLAENTVASYRNDLSKLLGWMAQHQYRLDFISFSGLQEYQIWLTEQD 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P+S  + L+++R LF++  R++  A +P   +  PK  T   +  T+  ++   S   
Sbjct: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSAPD 130

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
             +    + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENAV 190

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                 +  F ++  Q+M    F    K  A  A ++    S H +
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVEQLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 342

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 128/346 (36%), Gaps = 21/346 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPY-PHESTFIPAYMSALTGST 55
             +  P+VT +RT  GK  +Y+R       +   R I LP  P    F  AY S  +G++
Sbjct: 2   RKQRKPYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTS 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            + +     R K  T + L+  YR SA +  LA  ++ S+    + I+  + D     IT
Sbjct: 61  EEVQ-----RPKKETWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTIT 115

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + +R        TP  A   +  + +L  +A  Q   A+           K     PW 
Sbjct: 116 KQKLRDLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLTLYGKQREYEPWP 175

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  ++            R A E +L +G R S +             ++  +K      +
Sbjct: 176 EWMVKALPDAP---LVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEI 232

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292
             P      LA  P+  +     N  Q M        F+A  T  G        HG+RK 
Sbjct: 233 FCPQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKL 292

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           S    A+AG T  E+ A    ++      Y K A+R +L      R
Sbjct: 293 SIIRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKLSRAAMER 337


>gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195]
 gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195]
          Length = 309

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R             +   +   +    + 
Sbjct: 19  LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQD 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + ++ +P   VE PK         ++  + +  S  +
Sbjct: 79  FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298


>gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 308

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 37/303 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR---SG 122
           L   + +S       + N+  ++ +   + +      D          I+   IR   + 
Sbjct: 13  LADAFVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDISVIAIRGYLAF 72

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +K   S+  + L+ +R  F++  ++  +  NP  +V  PK   +     + +DM + 
Sbjct: 73  LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLSVDDMFRL 132

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
               +  +    + R  FE +  +G+R S++      H++ +    +    G     V +
Sbjct: 133 LDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVVPV 192

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
               +  +A                   F+N ++ ++         K  A + G+    S
Sbjct: 193 GKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVSLS 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   DAGA    +    G K++   + YT  +           ++  V D 
Sbjct: 253 PHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVS---------MDKLMEVYDH 303

Query: 346 DDP 348
             P
Sbjct: 304 AHP 306


>gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 302

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 101/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           ++ ++  +      L+ N+  S+ +   ++++     ++    I+   ++          
Sbjct: 11  VVEQFLDAMWMERGLSENTLSSYRNDLFKLLKWMFENNYRLNFISISGLQDFQSWLVDEG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R+   + +P   +  PK      +  +++ +    S   
Sbjct: 71  YKQTSRARMLSALRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQVDALLSAPD 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 ANNPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKERLVPMGEDAI 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +        +           F +   ++M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLHQGRSELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGIDSELLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
 gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16]
          Length = 298

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           L+ ++  +      L+ N+  S+ +   ++++     ++    I+   ++          
Sbjct: 7   LVEQFLDAMWMERGLSENTLASYRNDLSKLLQWMSKHNYRLDFISLSGLQEYQTWLADEG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++  +        
Sbjct: 67  YKQTSRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQVDALLDAPD 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 127 PNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 186

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                 +  F +   ++M    F    K  A  AG++    S H +
Sbjct: 187 DWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDSEKLSPHVL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 296

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 23/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127
           + +   +         ++ N+  ++     + +    D    D R++T   + + ++  +
Sbjct: 5   EDIAQTWLNHLAVERGVSANTLSNYRRDIRRYVDWLADNGVQDLRQVTRPMVEAYLKDLR 64

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SSA + L   R L K+AV +  V  +    V  P          + +++ +    
Sbjct: 65  EKMAVSSANRALIVARGLHKFAVAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLIES 124

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                    + R   E L  +G R S+     V  +       +   K      V L   
Sbjct: 125 TPTETPVDLRDRALLEVLYGTGARISEVISLNVDDVATADDVLMLHGKGDKERLVPLGSH 184

Query: 241 FMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             + +    +              F+N     ++        K  A ++ ++KS   H +
Sbjct: 185 ARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 245 RHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286


>gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
 gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 105/286 (36%), Gaps = 34/286 (11%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                +  ITT +IR+ VE     
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAEN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + +  +NP L+++ PK + +     + +D++    + 
Sbjct: 62  GLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIIT 234
                 EG++       L  SGLR S+     +  +       +         K      
Sbjct: 122 SQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERI 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAG 281
           + + +  +  L    + ++ F      +              M    F+I  K+ A  AG
Sbjct: 182 IVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii
           RML369-C]
 gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD
 gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C]
          Length = 305

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 105/286 (36%), Gaps = 34/286 (11%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                +  ITT +IR+ VE     
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAEN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + +  +NP L+++ PK + +     + +D++    + 
Sbjct: 62  SLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIIT 234
                 EG++       L  SGLR S+     +  +       +         K      
Sbjct: 122 SQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERI 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAG 281
           + + +  +  L    + ++ F      +              M    F+I  K+ A  AG
Sbjct: 182 IVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
 gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM
           30120]
          Length = 300

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 24/284 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+ +    + R            + I  +   +      
Sbjct: 9   LIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDKQQLHLETVQSIDLQSFLAERIDGG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S+ + L+S+R LF++  R++  + +P   +  PK      +  +++ ++   +   
Sbjct: 69  YKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
              S   + +   E L   GLR S+        +      ++          + L +  +
Sbjct: 129 TEDSLELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKERLIPLGEEAI 188

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L                    F +    KM    F    K  A  A ++    S H +
Sbjct: 189 YWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGEALSPHVL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    +    G   +   + YT  A      +
Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRAL 292


>gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
 gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392]
          Length = 297

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
           L+  +         L+ N+  S+      +       +     +    ++  + SR    
Sbjct: 6   LVDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKQNLSLETLDPLDLQQFLGSRLEQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    +   
Sbjct: 66  YKATSTARMLSAMRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDLLNTPD 125

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +   
Sbjct: 126 VEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAA 185

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +    +               F +   Q+M    F    K  A  A ++    S H +
Sbjct: 186 FWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
 gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6]
          Length = 298

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 104/291 (35%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           LI  +  +      L+ N+R ++ S          +     I           +    + 
Sbjct: 8   LIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKHLELINAGRELILDHLAWRLEQN 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ + ++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADVEALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +        +           F +   ++M    F    K +A  AG+ K+   H +R
Sbjct: 188 VWVERYMREARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKTLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAKHHPR 297


>gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
 gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202]
          Length = 306

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           + ++  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNALPQWSSDDIADVLIELTKAGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++         +
Sbjct: 80  RSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVESLIQAPDINT 139

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R  FE L   GLR S+     ++ +      ++          V L     + +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQFACEWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 88/275 (32%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q           +  +  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSALPEWKSDDIADVLIELTKAGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++         +
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R  FE L   GLR S+     ++ +      ++          V L     + +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQFACEWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
 gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591]
          Length = 299

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESRK 127
           LI ++  +     +LA N+  S+ +    +       +   +  + +      +      
Sbjct: 8   LIEQFLDALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPLDLQGFLAERLEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  +S+ + L++MR LF++  R++  A +P   +  PK      +  T+  ++   +   
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQVEALLAAPV 127

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 TDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L         +          F +N  Q+M    F    K  AT A ++    S H +
Sbjct: 188 YWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 305

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127
           L+ ++  +      L+ N+  S+ +   +++       +    I+   ++          
Sbjct: 14  LVEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDLD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193

Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                 +  F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
 gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1]
          Length = 295

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 105/285 (36%), Gaps = 26/285 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV- 123
             TL+  I  Y  S     LA N+  S+          ++++G     + +  +I   + 
Sbjct: 2   DRTLRDFIH-YL-SVE-KGLAKNTLESYNRDLRTYYTYLKQNGITSLEETSRSNIVGYLL 58

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
             ++     S+  + + S+R  + +  ++ ++  NP   +E PK + +  R  T ++M  
Sbjct: 59  SLQNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDL 118

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
              Q       G + +   E +  +G+R S+     +  +  +   I+    G+      
Sbjct: 119 LLEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIP 178

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                   V       +   +   G+ + F+N    ++    F    K  AT+AG+ K  
Sbjct: 179 LGSVAIRNVGRYLNEGRPKLVRQAGEASLFVNQHGNRLTRQGFWKILKKYATRAGITKEI 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT+     
Sbjct: 239 TPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHK 283


>gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
 gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551]
          Length = 297

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVESRKHTPSSAIQFL 137
             LA N+  S+E    +  +          + ++T  HI      +  ++ +  +  + +
Sbjct: 16  RGLAKNTIDSYERDLKKYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S R   ++ +R++    +P + ++ P+ + +  +    E+++   + +   +    + +
Sbjct: 76  ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE-----------LPDGF 241
              E L  +G+R S+     +      +  I+          V                 
Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEEYLQHS 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             +L       +  F+N+  +++    F    K  A++A + K  + H +R   AT   +
Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVT-KARL 286


>gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
 gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909]
          Length = 299

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +   +   G    R      +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  + +  +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDRLLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang]
 gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334]
 gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23]
 gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W]
 gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II]
          Length = 293

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 21/270 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140
             LA  ++ S++               R    +   I+S ++ +  T  P+S  + ++++
Sbjct: 16  RGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQSFLKEQNATKAPASVSRMISAL 75

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAF 196
           R  +++ +R+  ++ +P   ++ PKR        + ++    M +  +    G + R  F
Sbjct: 76  RKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEVDALMAKPDTDKPLGLRDRAIF 135

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------- 248
           E +  +GLR S+     +  L   +     T K      V +     + +          
Sbjct: 136 ELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKGDKERLVPISPQATQWVDRYLQEARPK 195

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
               +  +  F+N     M         KA     G+ K  + H +R   AT   + GA 
Sbjct: 196 LLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIASIGIEKDVTPHTLRHSFATRLLENGAD 255

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +    G   +   + YT  +++  + +
Sbjct: 256 LRVVQELLGHSDISTTQIYTHLSNQHLVAV 285


>gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
 gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2]
          Length = 302

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 29/295 (9%)

Query: 72  KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L++ + +     +  +V++R +++    + I      G  + +      + + + S +
Sbjct: 2   EELLARFLQYMDSLNSGSVHTRAAYQRDIREFISFLQEEGIEELQDADRIIVMNYIASLR 61

Query: 128 HTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             P        S+  + L+S+R  +++      +  NP L  + PKR          ++M
Sbjct: 62  EKPGVSGEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEM 121

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
             F S +   +    + R  FE +   GLR S++    +  +  +   +           
Sbjct: 122 DTFLSSFDLDTPDGLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGNKQRI 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--N 283
           V       +LL          ++  +   +                  +  A    +  +
Sbjct: 182 VPFYALAGELLEHYLQEVRPQWMKEEHDIVFINQRGKGLTTRGIQYRMQLAADTCSLSVH 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
              H  R   AT   D GA    +    G  ++   + Y     +R++    ++ 
Sbjct: 242 VHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAH 296


>gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 100/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP- 130
           + ++  +      L+ N+  S+ +   ++++     ++    I+   ++           
Sbjct: 12  VEQFLDAMWLERGLSENTLASYRNDLSKLLQWMTENNYRLDFISLSGLQDYQSWLMDQGY 71

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+++R LF++  R++  A +P   +  PK      +  ++E ++   +    
Sbjct: 72  KQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQVEALLNAPDP 131

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
                 + +   E L  +GLR ++     ++++      ++    G     V + +  + 
Sbjct: 132 NDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVD 191

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +        +           F +   ++M    F    K  A  AG++    S H +R
Sbjct: 192 WIETFIQQGRSELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGIDTEMLSPHVLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 252 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 296

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 23/283 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
           L+ +   +         ++ N+  ++     + +   GD    D R +T   + + ++  
Sbjct: 4   LENIAQTWLNHLAVERGVSANTLSNYRRDVRRYLSWLGDNGVEDLRSVTRPMVEAYLKDL 63

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +     SSA + L   R L K+AV +  V ++  + V  P    +     + +++     
Sbjct: 64  RSHMAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALIE 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                +    + R   E L  +G R S+     V  + +    I+   K      V +  
Sbjct: 124 ATPTETPVDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGS 183

Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              + L    +              F+N     ++        K  A +A + KS   H 
Sbjct: 184 HARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 244 LRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286


>gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
 gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus
           JCSC5402]
          Length = 295

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 24/276 (8%)

Query: 73  WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKH 128
            +I E+         L+ N+  ++    +   +   +        I    I   +   K 
Sbjct: 3   EIIDEFLHFIMIEKGLSENTIAAYRRDLNHYKKFLEESHIGSIDNIDRFTISLFLGKLKD 62

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  +  +   S+R   ++A+R++Y   +P + +E PK + +     T E++  F S 
Sbjct: 63  DGKSSKTLARVTASVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEVDIFLSS 122

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                  G + +   E L  +G+R S+     V  +   + F   T K      V +   
Sbjct: 123 PDTSKVTGRRDQAMLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIVPIGTH 182

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            +KL+           +          N   ++M    F    K    ++G+    + H 
Sbjct: 183 MIKLMDAYIANTRHKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKKLTPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    +    G   +   + YT 
Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHADISSTQLYTH 278


>gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS]
 gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS]
          Length = 307

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 99/281 (35%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
            ++Y +      +++  +  ++ +     +    +       ++    +R  + S     
Sbjct: 5   FNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + L+++R  +++ +R+  +  NP L+   P+         T  ++ +      
Sbjct: 65  IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPD 124

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
               +G + +   E L  SGLR S+  +  +++L  +   I+          V +    +
Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAI 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           + +                    F+N +  +++A  F       A +AG+ K    H +R
Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
              AT   D GA    +    G   +   + YT     + R
Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQAR 285


>gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21]
 gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21]
          Length = 298

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
            L  +Y        LA N+R S+                ++I+   I + +   K   + 
Sbjct: 12  ALFMDYLTVEM--GLARNTRESYGRDLRLFA-VWVKKPIKEISRDDILTYMSVLKAQNYA 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S+ + L +++  F++   +  + ++PC  VE   R     +  + +++ +        
Sbjct: 69  VTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDLD 128

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244
           +    + R   E +  +G+R S+     V  +      +     G     + L    ++ 
Sbjct: 129 TPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIEY 188

Query: 245 LAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           L          F+  ++             M   +F    K    K  + K  + H +R 
Sbjct: 189 LKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKSLTPHILRH 248

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             AT   D GA    +    G   +   + YT   +     I
Sbjct: 249 SFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAI 290


>gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
 gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565]
          Length = 303

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITT-KHIRSGVESRK 127
           LI  +  +      L+ N+  S+ S  ++      +         +   +H  +     +
Sbjct: 13  LIEPFLDALWLERGLSDNTVSSYRSDLEKFSLWLDEQGSSLLLAGMDEIQHYLAWRVDHQ 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  +FL+++R  +++  R++  + +P + +E PK   +     ++ +++   S   
Sbjct: 73  FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALLSAPL 132

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+      +H+      ++          V + +  M
Sbjct: 133 VDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAM 192

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             L        T           F +   + M    F    K  A +AG+    S H +R
Sbjct: 193 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGINGELSPHTLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT  A+     +
Sbjct: 253 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 295


>gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC
 gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 303

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 97/288 (33%), Gaps = 29/288 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE--- 124
              +S +        + + ++ +++E                    ++   +R  +    
Sbjct: 6   DQWVSAFLLYLKMEKNHSPHTIVNYELDLRHFRDFMEQQSIPSFAAVSYAFVRHYLTVLY 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +++  S+  + L+++R  +++ VR+++V  NP L    PK   +      +E+M+Q   
Sbjct: 66  EQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLD 125

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
             +  S    + R  FE +  SGLR S+ C   +Q +  +        K      V +  
Sbjct: 126 ALNGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYVPIGS 185

Query: 240 GFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
                +                        F+N     +              +A +   
Sbjct: 186 FACDAIQEYIENGREKLLKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAALSTR 245

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            S H +R   AT   + GA    +    G + +   + YT    DR+R
Sbjct: 246 VSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLR 293


>gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
 gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175]
          Length = 318

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 26/281 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127
           + ++          +  +  ++E           +           +  +     +    
Sbjct: 6   MQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHREN 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
           +  SS  +FL+S+R  + + V ++ V  NP  SV   K K      + ++++++F +   
Sbjct: 66  YNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSID 125

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
              S   + +   E L  +G+R S+     ++ L  +   I    K      V + D   
Sbjct: 126 GNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFAR 185

Query: 243 KLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             L                      F+N+    +         +    ++G+      H 
Sbjct: 186 TALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKIHPHM 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G  ++   + YT      
Sbjct: 246 LRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEA 286


>gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 106/360 (29%), Gaps = 47/360 (13%)

Query: 17  RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK  Y         G  ++  L              AL           +   +  T 
Sbjct: 7   KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEE---ALPRILNIIYQNKNKLLEQKTF 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126
             L+  +  +     +++++  S+ S     I    GD +  K+T   ++   +     +
Sbjct: 64  GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITGEK 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + + A+     +     +AVR   +  NP   V+ P++++     W ++ +++     
Sbjct: 124 GLSSTLALYHHRIIHQALDYAVRMNMIEKNPADYVDPPRKRSYQPSIWDEDTIKRALD-I 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------- 233
              +   +     +Y+G+R  +        +      I   KT   I             
Sbjct: 183 FRNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQGYIVVSKTLMKINRQLYIKEKGENK 242

Query: 234 ------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                  + + + L      +       D +  +    +  F+ 
Sbjct: 243 SSYRIVAISSNVIEELKQWRRKQEQYKEKLKELYHNEGFVCTFEDGRVQDPKYITKVFQK 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
              K G+ K   H +R   A++    G     +    G  T+      Y+   D  R  +
Sbjct: 303 TIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRRKV 362


>gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
 gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1]
          Length = 304

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
           L+ ++  S      L+ N+  S+ +   ++++     ++    I+   ++          
Sbjct: 13  LVEQFLDSMWMERGLSENTLSSYRNDLFKLLKWMNEHNYRLDFISLSGLQEYQTWLMDQN 72

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+++R LF++  R++  + +P   +  PK      +  T++ +        
Sbjct: 73  YQQSSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQVTALLEAPD 132

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +  +
Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKERLVPMGENAI 192

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             ++                   F +   ++M    F    K  A  A ++    S H +
Sbjct: 193 DWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADIDTELLSPHVL 252

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292


>gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 304

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127
           L+ ++  +      L+ N+ +S+ +   +++      ++    I+   ++          
Sbjct: 13  LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 73  FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAPD 132

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  +  AG++    S H +
Sbjct: 193 DWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTDLLSPHVL 252

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292


>gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
 gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380]
          Length = 299

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 92/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +                   +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGSQDLQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
 gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8]
          Length = 302

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 23/282 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128
              I  +  +      L+ N+  S+          +         I    ++  +  +  
Sbjct: 11  AAAIDSFLDAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKFP 70

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  + + S+R  +++ +R+  +AI+P L +E PK      +   +E++    +  
Sbjct: 71  LSKPRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNAP 130

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +     G + +   E L  SGLR S+        +  +   ++          V + +  
Sbjct: 131 NVDDVVGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKGSKTRLVPMGENA 190

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ ++                   F+ N    M    F    K  A  AG+ K  S H +
Sbjct: 191 VEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGITKHMSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 251 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVA-RERL 291


>gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
 gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969]
          Length = 299

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +           +       +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P  ++  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQVDALLNAPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 307

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 95/286 (33%), Gaps = 28/286 (9%)

Query: 68  PTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SG 122
           P TL     E+         L+ N+ +S+           G D     +T + +R     
Sbjct: 2   PETLFECSEEFLIYLGSVRGLSENTLLSYRQDLAHFCEFFGNDKSAEGLTLEDLRLFVGY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK++ +S  + ++++R LF +  +  Y++ N    ++  ++     R  ++ ++   
Sbjct: 62  LSRRKYSVASINRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTLPRFMSQVEIDNV 121

Query: 183 KSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                +      S+ +  FE +  SG R S+      Q   ++  S I T K      V 
Sbjct: 122 CRQPEKKELLWASRDKAIFEMMYSSGCRVSELASLKFQDFTSDFRSAIVTGKGKKDRRVY 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------------NATQFSIWFKAK--ATK 279
                   L +    ++  F   +K                  +A               
Sbjct: 182 FEQDARNSLMLYLKERKARFPQAEKGCAGEVSRIFLSQKGTALSAHGIWYIVSRYTGIEG 241

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            G + S H  R   AT   ++GA    +    G   +   + YT  
Sbjct: 242 TGSHVSPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHV 287


>gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
 gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum
           SK141]
          Length = 296

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 97/283 (34%), Gaps = 23/283 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
           L+ +   +         ++ N+  ++     + +   GD    D R +T   + + ++  
Sbjct: 4   LENIAQTWLNHLAVERGVSANTLSNYRRDVRRYLAWLGDNGVEDLRSVTRPMVEAYLKDL 63

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +     SSA + L   R L K+AV +  V ++  + V  P          + +++     
Sbjct: 64  RSHMAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALIE 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                +    + R   E L  +G R S+     V  + +    I+   K      V +  
Sbjct: 124 ATPTETPVDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGS 183

Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              + L    +              F+N     ++        K  A +A + KS   H 
Sbjct: 184 HARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 244 LRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 286


>gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32]
 gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32]
          Length = 320

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127
           L+ ++  +      L+ N+ +S+ +   +++      ++    I+   ++          
Sbjct: 29  LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 89  FKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAPD 148

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 149 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 208

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  +  AG++    S H +
Sbjct: 209 DWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSPHVL 268

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 269 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 308


>gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217]
 gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217]
          Length = 339

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 126/339 (37%), Gaps = 18/339 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG---RRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           P++  +  + G+   YFR   G    R RLP  P    F+ AY +  +G    +      
Sbjct: 7   PYLEFKTVK-GRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSGRKKVQ------ 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               TT   L++E+ K+  +   A  +R ++  + + I  K+G+ D ++   K   +   
Sbjct: 60  --SKTTWHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQR 117

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + + T S A + +  + +L K AV  E++  NP + + +         P  K    +   
Sbjct: 118 ALQDTWSKANERIAVLSILCKLAVDLEWIDRNPVVDIPKLSGGEYEPWPDDKLTAYERYC 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              + +  R  +E  + +G R  D              S+   KTGT +T+  P      
Sbjct: 178 DRHDLTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQTY 237

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISAD 299
           L   P         N  Q M         +   T   +         HG R  +A   +D
Sbjct: 238 LCTLPRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQLSD 297

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AG    E+ A  G KT++    Y    D+     +  ++
Sbjct: 298 AGCDDAEIQAVTGHKTMEMVRKYRARRDQKAASKRAQQK 336


>gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 300

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES 125
           LK  I +Y         L+ N+  S++       R         ++  +  +HI   ++S
Sbjct: 4   LKDSIEDYLHFIKVERQLSDNTLQSYKRDLVAYARHIHYEQQIMEFDNVMREHILLYLDS 63

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +    +  +  + ++S+R   ++ +R++    +P + +E PK++    +  + E++   
Sbjct: 64  LRSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEEIDAL 123

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII---- 233
            +       +G++     E +  SG+R S+     ++ +   +  ++    G        
Sbjct: 124 LTAPSVEKPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKERIIPL 183

Query: 234 -------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                   +   +     L    +  + FFI    ++          K  A  AG++K  
Sbjct: 184 GRSAIQACINYLEQARPQLLGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAGISKEI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT  +   
Sbjct: 244 TPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTR 288


>gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
 gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319]
          Length = 297

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 97/272 (35%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI---RSGVESRKHTPSSAIQFL 137
             LA N+  S+E       +          + ++T  HI      +  ++ +  +  + +
Sbjct: 16  RGLAKNTIDSYERDLKNYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S R   ++ +R++    +P + ++ P+ + +  +    E+++   + +   +    + +
Sbjct: 76  ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE-----------LPDGF 241
              E L  +G+R S+     +      +  I+          V                 
Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEDYLQHS 195

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
             +L       +  F+N+  +++    F    K  A++A + K  + H +R   AT   +
Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            GA    +    G   +   + YT    + RL
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVT-KARL 286


>gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1]
 gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4]
          Length = 294

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 22/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ +S+E    ++          G     +         +E     P++  + + 
Sbjct: 16  KQTSKNTEVSYERDLRKMNEYLEAQNVYGVSAVTETNLNAYVMFLEREGRKPATVSRSIA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           SM+  F +  ++  +  +P   ++ PK +    R  T E++       S  +    + + 
Sbjct: 76  SMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLEQPSGNTPKELRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+     V  L   +  +          +   +   + L         
Sbjct: 136 MLELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRD 195

Query: 255 FFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
             I+                +   F    K    KAG+    + H +R   A      GA
Sbjct: 196 HLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGA 255

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G   +   + Y+
Sbjct: 256 DLKSVQEMLGHSDISTTQIYS 276


>gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
 gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM
           12042]
          Length = 304

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 26/303 (8%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124
            TL+    +Y          +  +   + +   +  +           +I +  +   V 
Sbjct: 1   MTLEEAFRQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYVR 60

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DM 179
             +R H  +S    +T++R   ++   +    ++P   +E+ +R        T++    +
Sbjct: 61  VLARDHAAASVNHAITAIRGFHQFLAFRFD-ELDPAEYLEQLQRTQSLPVYCTRDEIEKI 119

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                   +  +     E L   GLR S+     +  +   +  ++          V +P
Sbjct: 120 MAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVPMP 179

Query: 239 DGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              +K++                   FI    +K          K+   +AG+    + H
Sbjct: 180 KQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVD 344
            +R   AT   + GA    +    G   +   + YT   DR RL     +   ++     
Sbjct: 240 KLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTH-IDRSRLRTAYDEGLGKLMDQEG 298

Query: 345 SDD 347
            +D
Sbjct: 299 END 301


>gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 304

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK--- 127
           L+ ++  +      L+ N+ +S+ +   +++      ++    I+   ++          
Sbjct: 13  LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADAD 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R LF++  R++    +P   +  PK      +  ++E +        
Sbjct: 73  FKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQVNALLEAPD 132

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 133 PNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAV 192

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  +  AG++    S H +
Sbjct: 193 DWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAGIDTELLSPHVL 252

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 292


>gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
 gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970]
          Length = 299

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYR--KITTKHIRSGVESRK 127
           LI ++  +     +LA N+  S+      +   +   G    R      +   +      
Sbjct: 8   LIEQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEGG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +    +  +
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLLNSPN 127

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 VDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +         +          F +N  Q+M    F    K  A  AG++    S H +
Sbjct: 188 YWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHARHHPR 297


>gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126
             LI  +         L+ N+  S+      + +           + +  +++ +  R  
Sbjct: 5   SALIELFLNELWLGKGLSDNTVQSYRLDLTALSQWLQGQGKSLETLDSSDLQAFLGERVD 64

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S  + L++MR LF++  ++ Y   +P   +  PK      +  T++ +    + 
Sbjct: 65  QGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQVGDLLNA 124

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
            S       + +   E L  +GLR ++       ++      ++          V + + 
Sbjct: 125 PSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIVPMGEE 184

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               +    +               F +    +M    F    K  A  A ++    S H
Sbjct: 185 ASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTDSLSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 286


>gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116]
          Length = 305

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127
           L+ ++  +      L+ N+  S+ +   +++       +    I+   ++          
Sbjct: 14  LVEQFLDAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDLD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKERLVPMGENAV 193

Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                 +  F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
 gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 88/275 (32%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
            +  +R      +++ ++R ++ S   Q           K ++  I      +     +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCAELHKKNSLPKWSSDDISDVLIELTKIGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K+   Q+  + NP  +   PK      +  ++ED++          
Sbjct: 80  RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 304

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 95/270 (35%), Gaps = 24/270 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRKH 128
            ++Y +     + + ++ +S++    ++       G    + +T   + S    +E    
Sbjct: 18  FADYLE--EEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQMEKEGF 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + SS  + + S+R  F + V+ + V  +P  +++ P  + +     T E+  Q  +    
Sbjct: 76  STSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPEL 135

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
            S    + +   E L  +G+R S+     +  +   +  +  + +     +       K 
Sbjct: 136 DSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRDSDKERVIPFGTEAEKA 195

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           L                 E  F+N   + M+   F    K  + +AG+  + + H +R  
Sbjct: 196 LKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDITPHTLRHS 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
                   GA    +    G   +   + Y
Sbjct: 256 FGAHLVQNGADLRAVQEMMGHSDISTTQIY 285


>gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
 gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574]
          Length = 296

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 25/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
           +  + E+         LA N+  S+     Q +          I      H+ + +   +
Sbjct: 2   ERWLQEFIHYLAVERGLAQNTLASYRIDLSQYLSHLKKQGVTAIDQANRNHVLTHLYKLQ 61

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
            +   P++  + L +++  +++ +    V  +P +++E PK      +  T  +++    
Sbjct: 62  KSGKAPATISRHLAALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEVEALLS 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
           Q +     G + +   E +  +G+R S+     ++H++ ++  I+          + L  
Sbjct: 122 QPQLADPAGLRDKAMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKGSKERIIPLGA 181

Query: 240 GFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                           L          F+N   +++    F    K  A +A +NK  + 
Sbjct: 182 VAAHYVREYLARSRVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAREANINKHITP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 HTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 279


>gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
 gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQSDDLQALLAERMDGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S+ + L++ R  F+   R++Y   +P  S+  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
 gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 24/270 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           +Y         + N+ +S+E    ++   +   G      +T + + S V   + +   P
Sbjct: 12  QYL--HQEKQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLNSYVIELEQSGLKP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           ++  + + SM+  F +   ++  + +P   ++ PK + +     T E   +  +   +  
Sbjct: 70  ATVSRSVASMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQTNRLLAQPKDNS 129

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             G + +   E L  +G+R S+     +  +  +   I    +     + +       L 
Sbjct: 130 AKGLRDKAMLELLYATGIRVSELISLKLTDVNFDTGYITCVDSHKGRMIPMTPVAKDALV 189

Query: 247 MTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
                              F N     M+   F    K+   +AG+    + H +R   A
Sbjct: 190 RYIRDGRPQLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIESEITPHMLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
                +GA    +    G   +   + Y  
Sbjct: 250 AHLVCSGADLKSVQEILGHSDISTTQMYAH 279


>gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila
           L48]
 gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R S+ S          +          + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRTSYRSDLALFNGWLQEQGVALPDAGRELILDHLAWRFDQA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R+  +A++P L V+ P+      +  ++ D++       
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLKAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     +  +      ++          V + +  +
Sbjct: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                 +  F +   ++M    F    K  A  AG++K  S H +R
Sbjct: 188 LWLERYLRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 287


>gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As]
          Length = 317

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 104/313 (33%), Gaps = 35/313 (11%)

Query: 59  EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKI 114
           E+  +P    TT+       + +      L+ N+  ++      + R           + 
Sbjct: 9   EWPPAPEACATTIDRFCDALWLED----GLSPNTLAAYRRDLTLMARWLAFSQRQPLIEA 64

Query: 115 TTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T + +++ + +R      +S+ + L  +R  ++WA+R+     +P L ++  ++     +
Sbjct: 65  TLRDVQAYIAARFMQSKATSSNRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPK 124

Query: 173 PWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227
             ++  ++   +     +    + R   E L  SGLR S+     V  +  +        
Sbjct: 125 TLSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQFS 270
           K G    V         L           +                       M    F 
Sbjct: 185 KGGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFW 244

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  KA A KAG+    S H +R   AT   + GA    +    G   +   + YT  A R
Sbjct: 245 MRIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-R 303

Query: 329 IRLGIKNSRRISS 341
            RL   ++R    
Sbjct: 304 ERLKTLHARHHPR 316


>gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS]
 gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073]
 gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046]
 gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227]
 gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae
           Sd197]
 gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536]
 gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str.
           8401]
 gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC
           3083-94]
 gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. EC4024]
 gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11]
 gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6
           str. E2348/69]
 gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1]
 gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a]
 gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989]
 gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. TW14359]
 gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9]
 gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B]
 gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50]
 gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736]
 gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD
 gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD
 gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073]
 gi|147548|gb|AAA62787.1| xprB [Escherichia coli]
 gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli]
 gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046]
 gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536]
 gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401]
 gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A]
 gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5]
 gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94]
 gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196]
 gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113]
 gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638]
 gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076]
 gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401]
 gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486]
 gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869]
 gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508]
 gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A]
 gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11]
 gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22]
 gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019]
 gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171]
 gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012]
 gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1]
 gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206]
 gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045]
 gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042]
 gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115]
 gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli]
 gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli]
 gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli]
 gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli]
 gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11]
 gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82]
 gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific
           recombination system [Escherichia coli BL21(DE3)]
 gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str.
           REL606]
 gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli
           BL21(DE3)]
 gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11
           str. 11368]
 gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2
           str. 12009]
 gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H-
           str. 11128]
 gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1]
 gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15]
 gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042]
 gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615]
 gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088]
 gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185]
 gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354]
 gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1]
 gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1]
 gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1]
 gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1]
 gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1]
 gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1]
 gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1]
 gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1]
 gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1]
 gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1]
 gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1]
 gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7]
 gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1]
 gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1]
 gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1]
 gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1]
 gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W]
 gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU
           83972]
 gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617]
 gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75]
 gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1]
 gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1]
 gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1]
 gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3]
 gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431]
 gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112]
 gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905]
 gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83]
 gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212]
 gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327]
 gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B]
 gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. G5101]
 gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. 493-89]
 gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H-
           str. H 2687]
 gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. LSU-61]
 gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010]
 gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G]
 gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180]
 gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357]
 gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1]
 gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11]
 gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520]
 gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482]
 gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120]
 gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489]
 gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863]
 gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007]
 gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509]
 gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2]
 gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1]
 gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167]
 gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227]
 gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125]
 gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v]
 gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86]
 gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736]
 gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605]
 gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206]
 gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143]
 gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271]
 gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280]
 gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591]
 gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299]
 gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74]
 gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74]
 gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9]
          Length = 298

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13]
          Length = 280

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128
           L  +  +Y+        +  +  ++   ++ ++R  GD +   +TT  ++      S   
Sbjct: 3   LSQVWEKYQLDKKIEGYSPLTLKTYCFQYNMLLRYFGDIELNILTTDQLKEYLIKGSTHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  +R LFKWA  + ++  NP   ++ PK      +  T+ +++       +
Sbjct: 63  KPSSLGHRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEH-LRESCQ 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247
            S     FEF   +G R  +  +     +   +   I   K      V         L  
Sbjct: 122 NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLWLKR 181

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
               ++             K++M+        K  ++ AG+ K    H +R   AT   +
Sbjct: 182 YLDERDDQDQSLFITERRPKRRMSIDLIRYIIKRISSGAGIKKNIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +    Y + + ++R
Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272


>gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185]
 gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185]
          Length = 309

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R             +   +   +    + 
Sbjct: 19  LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQD 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + ++ +P   VE PK         ++  + +  S  +
Sbjct: 79  FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 138

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 139 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 199 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 256

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 298


>gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           301]
 gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str.
           2457T]
 gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89]
 gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88]
 gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD
 gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89]
 gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA]
 gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034]
 gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146]
 gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T]
 gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3]
 gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252]
 gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263]
          Length = 298

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 299

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 94/281 (33%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESR 126
            LI ++  +     +LA N+  S+      +         G    + +  +   +     
Sbjct: 7   ALIEQFLDALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSLDLQAFLADRVEG 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +S+ + L++MR  F++  R++  + +P   +  PK      +  ++  +    +  
Sbjct: 67  GYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLNAP 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++   K      V L +  
Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +         +          F ++  ++M    F    K  A  A ++    S H 
Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASIDSEKLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes
           WB4]
 gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes
           WB4]
          Length = 302

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 95/272 (34%), Gaps = 23/272 (8%)

Query: 76  SEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRKHT 129
            EY         L+ N+  ++E    ++            + TT+ +R  +    S    
Sbjct: 6   DEYHLYLKLEKALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRDFIIEISSLGIH 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           P S  + L+S++  + + + ++ +  +P   +E PK         +  ++    S     
Sbjct: 66  PRSQARILSSIKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAIDLS 125

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTIIT 234
             EG + +   E L  SGLR S+     +  +  +   +                  +  
Sbjct: 126 KPEGQRNKAIIEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPMSPQAMKQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +EL      LL +    ++  F+N    K+         K  A  AG+ K  S H  R  
Sbjct: 186 IELWKTDRNLLDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVSPHTFRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    +    G +++   E YT 
Sbjct: 246 FATHLLENGANLRAIQQLLGHESITTTEIYTH 277


>gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132]
 gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132]
          Length = 307

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI---RSGVESRK 127
            +  Y +       L+ NS   + +    ++    +     + +T + +    + + +R 
Sbjct: 17  WVDRYLEHLLIEKGLSENSLTGYANDLGSLLAFLEERSFPLKDLTDQTLFLYLTHLRARG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
               S  + L+S+R  F +AV +++   +P   +E PK   +     ++E++ +      
Sbjct: 77  LKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSREEISRVLALPD 136

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +    G + ++  E L  +GLR S+     V  +           K      + +     
Sbjct: 137 TSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLIPIHYTAQ 196

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             L          F   +                     K  A  AG+ +S   H  R  
Sbjct: 197 DYLNRYLEFTRPGFKPREDFMFLNRSGKGLTRQGVWKLIKKYAEAAGIKRSISPHTFRHS 256

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            AT   + GA    +    G   +   E YT   A+R++
Sbjct: 257 FATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLK 295


>gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68]
          Length = 298

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 292

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 93/280 (33%), Gaps = 25/280 (8%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   +   + +      L+ N+  S+ +    +       +   +  + + + +  R   
Sbjct: 5   VDAFLDNLWLEH----GLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKN 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++  S  + ++++R  + W +       NP   +  PK      +  T+ D+++     
Sbjct: 61  GYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAP 120

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G + +   E +  +GLR S+        +  N        K      V + +  
Sbjct: 121 DLTDDIGIRDKAMLELMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERIVPIGEYA 180

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ L                ++  FI+   +++    F    K+    AG+  + S H +
Sbjct: 181 LEYLHKYFEESRELLAKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINTDISPHTL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   V     YT  +   
Sbjct: 241 RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR 280


>gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301]
 gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301]
          Length = 302

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 22/267 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141
            L+ N+  S+              +     +    I+  +  +  +  P S  + + SMR
Sbjct: 26  GLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQADIQQYLAVKFPQSQPRSISRLIASMR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197
             +++ +R   ++++P + ++ PK      +   +E++    +  +     G + R   E
Sbjct: 86  RFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIVEAAGLRDRAMLE 145

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------- 248
            L   GLR S+     V  +  +   ++          V + +  +  ++          
Sbjct: 146 LLYACGLRVSELVGVKVTEVSVSDGVVRITGKGSKTRLVPMGEEAVDWISRYLSDARSAI 205

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +  F+ N  + M    F    K  A  AG+NK  S H +R   AT   + GA  
Sbjct: 206 LQKRLCDALFVTNRGEAMTRQAFWYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGADL 265

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT  A R RL
Sbjct: 266 RVVQMLLGHSDISTTQIYTHVA-RERL 291


>gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
 gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212]
          Length = 303

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 31/306 (10%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKIT 115
             P      L       + +      L+ N+  S+ +            +       + T
Sbjct: 2   RVPELNTGLLDEFSDALWLED----GLSRNTLDSYRNDLQLFSEWLKRRNPSNSMLTEAT 57

Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +   + SR   K   S+  + L+S++  +++ +RQ  +AI+P L++E PK +     
Sbjct: 58  NSDLLEFLASRVAAKMKASTTSRELSSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPE 117

Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             ++++++   S        G + R   E L  SGLR S+        +  ++  ++   
Sbjct: 118 SLSEKEVELLLSAPDLAQPLGLRDRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMG 177

Query: 229 T-GTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKA 277
                    + +  ++ L                 +T F+      M    F    K  A
Sbjct: 178 KGRKERLAPVGEESLQWLNRYTKEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYA 237

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              G+ K  S H +R   AT   + GA    +    G   +   + YT  A R RL   +
Sbjct: 238 QLVGIAKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RERLKQLH 296

Query: 336 SRRISS 341
           ++    
Sbjct: 297 AKHHPR 302


>gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGVTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 421

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 121/356 (33%), Gaps = 28/356 (7%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +         +       RR  LP P     + A+  AL  +  + +  ++  +K  T  
Sbjct: 59  QRTDAGWTWAWV--APSHRRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--TFA 114

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            LI+ YR+ A +  L+  ++  +E +   I    GD     +TT   +  ++S + TP+ 
Sbjct: 115 ALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATPAV 174

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A  F   +  L  + + + +   N   + E+   + +   PW     + F      G   
Sbjct: 175 ARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL-- 232

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L     LY+G R  D        +  N   +  +KTG  + V +   + ++L  T +  
Sbjct: 233 HLPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHVDH 292

Query: 253 ETFFINNDKQKMNATQFSIWFKA----------------KATKAGVNKS-----AHGVRK 291
               +  D        +   ++                     A           HG+RK
Sbjct: 293 PALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGLRK 352

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +  +  + G T  E+ A     +      Y +  ++ RL +   +++        
Sbjct: 353 NAVNMLLETGCTEAEVSAIVE-MSEQMVRHYARDVNKRRLAVNAMKKLEEGWAETR 407


>gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
 gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVSLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
 gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18]
          Length = 314

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
           K ++S YR+        + N+  ++    D++ R         +  K     +  + +  
Sbjct: 8   KDIVSRYRRYLKLEKGYSANTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEYFAAFISD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +  
Sbjct: 68  LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E L   GLR S+     + +L      I+          V +   
Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L      +    I          N   Q +  T   I  K  A +AG+ K+   H 
Sbjct: 188 ALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
 gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor
           NM305]
          Length = 297

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 95/285 (33%), Gaps = 24/285 (8%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
           +L  ++ ++  +      L+ N+  S+            +          T +       
Sbjct: 3   SLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLSLFTEWLDEPRAFLTVDHHTLQEFLGYRF 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + +  SS+++ L+ +R  F++   + Y   +P   +  P++ +   +   +E +     
Sbjct: 63  DQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDLLE 122

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
             +       + +   E L  +GLR ++      ++L      ++               
Sbjct: 123 CPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLVPLGE 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                ++    + + + +        F +   Q M    F    K  A  AG++    S 
Sbjct: 183 EASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSEKLSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286


>gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD
 gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 297

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 95/282 (33%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             LI  +         L+ N+  S+      +I+          +   I  +       +
Sbjct: 4   SALIELFLNEIWIEKQLSQNTIASYRLDLTALIQWLEKQQLTLINLDAIDLQTFLGERLN 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  +S  + L++MR LF++  R++Y   +P   +  PK  +   +  T++ +    + 
Sbjct: 64  QGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNS 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR ++     ++++  N   ++          V + + 
Sbjct: 124 PDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIVPIGEE 183

Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN---KSAH 287
               +    +    F ++              +M    F    K  A  + ++    S H
Sbjct: 184 ATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDINSLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 393

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 96/337 (28%), Gaps = 22/337 (6%)

Query: 28  GHGRRIRLPYPHES-TFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G  R + +       T   A   AL                 + R K      +  ++  
Sbjct: 48  GRQRWVTIGKFGSPWTVETARREALRLLGEAASGNDIGAEKQAKRAKGLLFGHVADQFIA 107

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             H+  L   +R S+ +     +    G      I    + +       TP +A   L+ 
Sbjct: 108 -IHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHARHAETPRNANHALSV 166

Query: 140 MRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  +  WA  Q            I      +R +  +          +   +   +    
Sbjct: 167 LSKIMNWAEEQGLRPAESNPCRNIRKYRETKRERYLSPDELARLGAALAAAEDDKTVDPY 226

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTP 249
              A   LL +G R S+       ++      +    + T   V   +     L   +  
Sbjct: 227 IIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKVIPLNQAALDLLGTLPR 286

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +    F +    +  +       ++    +AG++    H +R   A++S   G +   + 
Sbjct: 287 LNSNPFVLVGRVEGQHLVNLQKPWRRIRKEAGLDDVRIHDLRHSFASVSVGLGGSLPVIG 346

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G         Y   AD  ++  +      +++ +
Sbjct: 347 RVLGHSQPATTARYAHVAD--KVAAELVEAAGALIGT 381


>gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 360

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 99/333 (29%), Gaps = 26/333 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHW 84
           R    RR        +            +   R   +  R +  T    +  ++      
Sbjct: 20  RDWGERRGARGESRGAQTSQRETGDSADTADSRPLRSGNRHQAETSAAKVARQWITYLTV 79

Query: 85  -GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
               A N+  S+       +   G+     I    I + ++S        +S  + L+++
Sbjct: 80  ERGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTI 139

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R    +A  +  VA +    +  P          + +++       +  S    + +   
Sbjct: 140 RGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALL 199

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGK 252
           E L  +G R S+     V  +     +      T K      V +     + +    +  
Sbjct: 200 ELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRG 259

Query: 253 ETFFINNDK----------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                              + M+        K  AT+AG+  + S H +R   AT   + 
Sbjct: 260 RPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEG 319

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           GA    +    G  +V   + YT   AD +R  
Sbjct: 320 GADVRSVQELLGHASVTTTQIYTHITADSLRAM 352


>gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica
           RB50]
 gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 310

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 94/307 (30%), Gaps = 35/307 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENPACHPGLATGAS 59

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R      ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222
              +  ++  +          +    + R   E L  +GLR S+        +     + 
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
            +   K G    V L       +                    F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299

Query: 331 LGIKNSR 337
             +  + 
Sbjct: 300 KALHAAH 306


>gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like
 gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 311

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 27/304 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FD 110
             +         +      LI +Y       + + N+  +++S          +    +D
Sbjct: 7   MKRESEERQGLLERYNFPELIEDYLIELEIRNYSPNTIKTYKSIVKNFYEFLMNEDDLYD 66

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            R++     R     ++    +          ++  F+++       +      +   + 
Sbjct: 67  DRRVLRSFKRYIQYLKRDKKVTQNYIYLVTVVVKKFFEFSGIDCLEEVKAPKRTKSLPKS 126

Query: 168 TEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                  +  +                ++ RL    L  SGLR S+     +  +  +  
Sbjct: 127 LNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLRINDIDPDER 186

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           +I+ +        V   +    LL           E  F+N     +      +  K  A
Sbjct: 187 TIRIRGKGDKDRIVLFDENTRDLLMDYLKRRIHESEYLFLNRFGDPLTPRYVQMMIKNYA 246

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--------D 327
            KAG+ K  + H +R   AT     G     +    G   +   + YT           D
Sbjct: 247 RKAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYD 306

Query: 328 RIRL 331
           R RL
Sbjct: 307 RARL 310


>gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
 gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174]
          Length = 296

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 103/294 (35%), Gaps = 24/294 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK 127
           + +I  +          + N+ IS+E    ++ R   +    D+ ++T   ++  ++  +
Sbjct: 4   EKVIENFIAYMREAKKASQNTEISYERDLKKLARYLRNQKIMDFSEVTKTDLQGYLKELQ 63

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+  + + S+R L+ + +R   +  +P  +++ PK + +     + E++ +   
Sbjct: 64  KENLALSTISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLLK 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +  +    +     E +  +G+R S+     +  +   +  +    +     + + + 
Sbjct: 124 QPNLNTPKGIRDNAMMELMYATGMRVSELIHLQITDINLQMGYVICHDSEKERIIPIGNV 183

Query: 241 FMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               +         FF           N   + M+   F    K  A  AG+++  + H 
Sbjct: 184 SRNAILQYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIHRDITPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +R   A      GA    +    G   +   + Y  G +  R+     +     
Sbjct: 244 LRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYL-GMNVARMRDVYMKAHPRH 296


>gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126]
          Length = 306

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
             + ++         L++++  +++    ++ +  G +++  +T   I+  +   K   H
Sbjct: 13  QWLDKFLLHLQVERGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGH 72

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S    L+++R   ++ +  + +  NP   ++ PK+     +  + ++MQQ  +    
Sbjct: 73  SPRSIALRLSALRTFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPR 132

Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            S        +    FE L   GLR S+     +     +       K      + L   
Sbjct: 133 SSDDDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKDGTVKVMGKGSKQRILPLGRH 192

Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             K L      +  +             K +++  Q +      A++  +    S H +R
Sbjct: 193 AQKALNAWLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMASEQSLSQKVSPHKLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 253 HSFATHVLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 293


>gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis
           m4-4]
          Length = 297

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 95/270 (35%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E           +     D   +   +I   +   K       +  + +
Sbjct: 16  RGLSSNTLVSYERDLKSYCNHLKNTEQIEDLNHVVRGNIIEFLAFLKDQGKSSKTIARHI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + ++ PK +    +  + ++++      +     G + +
Sbjct: 76  ASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLLDSPNLQKPSGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     ++ +   +  ++          + L +  + +L       
Sbjct: 136 AMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKERIIPLGNHAITILKEYLEKA 195

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N+   ++    F    K  ATKA + K  + H +R   AT   +
Sbjct: 196 RPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANIQKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G   +   + YT      
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVTKTR 285


>gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 359

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 113/351 (32%), Gaps = 12/351 (3%)

Query: 2   TPSLRLPP--FVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
            P  + P    V + + R G+    +  + G  R+ RL      T     ++A      +
Sbjct: 1   MPRRKTPDRDGVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVER 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            + +          + + + +                       +    G      I   
Sbjct: 61  IKVLGFAEPTKERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRG 120

Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            I + V  R    +P++  + L +++ LF+  V  E + +NP   V+ PK     +R   
Sbjct: 121 DIANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVLNPATGVKAPKVAPGRVRWLQ 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E+++       +  +P         +G+R S+        +      +   +       
Sbjct: 181 PEELRALLQACPDWLRP--IAGLAAATGMRRSEVLGVRWFDVDRRNGCLTL-RQTKNNES 237

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            +       L +    ++         K+   Q S+ F     + G+ +   H +R   A
Sbjct: 238 RIVFLNQSALHVIDSLRKGKSSEKLFPKVTPEQVSMGFLRTCRELGIEDFRWHDLRHCFA 297

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           ++   +GA   ++    G K +   + Y+  +         +RR  +V+  
Sbjct: 298 SLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSA--AARRFDAVLGE 346


>gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 102/283 (36%), Gaps = 15/283 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128
             LI  Y       + +  +  SF+S  ++ +R  GD    ++T   +    + +  +  
Sbjct: 14  DELIDLYISHLVARNRSEKTIKSFKSILEEFVRFLGDRHVSQVTVYDVDFFLAHLRRKGW 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S      +++   ++      +        E PKR+    R    E++ +  +   E
Sbjct: 74  KKDSIYTAAVAVKRFLEFLGLGGNI-----AGFELPKREKRLPRYLEAEEVFRMVNAA-E 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +L    L  +GLR S+     V  +     +++ +        V  PD    LL  
Sbjct: 128 NLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYVADLLRS 187

Query: 248 TPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                  E  F +   + ++ T      K    KAG+ K  + H +R   AT+S  AG  
Sbjct: 188 YMKGLNSEWLFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLD 247

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             E+    G   ++  + Y     R RL     R  SS++D  
Sbjct: 248 IREIQELLGHSNLNTTQVYAH-VSRERLKRDYERVWSSLLDPR 289


>gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 298

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297


>gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
 gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3]
          Length = 302

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 23/285 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           L+  Y  +      L+ N+  ++        R +           +   +   + + + K
Sbjct: 12  LLETYLDAVWMEKGLSENTLAAYRRDLQSFARWASTRNRSTTKVARTDIEAYLAYLLAHK 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P SA + L+ +R  ++  +R   +  +P L ++ P+      +  ++ D+       +
Sbjct: 72  RSPRSAARALSCLRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADVDALLQAPN 131

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                G + R   E L   GLR S+     V  L  N   ++    G     V + +  +
Sbjct: 132 LEELIGFRDRCMLELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKERLVPVGEEAL 191

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             L                    F +   Q M    F    K  A  AG++K  S H +R
Sbjct: 192 HWLQRYLREIRPQLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIHKPISPHVLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              AT   + GA    +    G   +   + YT  A +    +  
Sbjct: 252 HAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHA 296


>gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
 gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905]
          Length = 300

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125
            ++ + +Y         L+VN+  S+    +  +       G  D+ ++    I   +E 
Sbjct: 4   FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFLQNAEGMADFNRVERTTILRHLEQ 63

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +       +  + ++S+R   ++ +R++    +P + +E P  + +     + E+++  
Sbjct: 64  LRAQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEAL 123

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
            +  +     G +     E L  SG+R S+     +  +   +  ++    G     + L
Sbjct: 124 LTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPL 183

Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
               +             L       + FFIN   +++         K  A KAG+    
Sbjct: 184 GKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT  +   
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288


>gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
 gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3]
          Length = 309

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 95/292 (32%), Gaps = 24/292 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126
            LI  Y+        L+ NS  S+    D++    GD     R++T +H+ +        
Sbjct: 8   QLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMGLSLREVTLQHLNNFAAHLLDL 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             +  S  + L+ ++  F++   +E +  +P   ++ P    +     T  ++       
Sbjct: 68  GISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEIDSLLGAI 127

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG- 240
                E S+     E L   GLR S+ C      +  +        K      V +    
Sbjct: 128 DEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPKA 187

Query: 241 ---FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGV 289
                + L            +           ++        +  A  AG++K  S H +
Sbjct: 188 VSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGIHKEISPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           R   AT   + GA  H +    G +++   E YT   DR  L     R    
Sbjct: 248 RHSFATHLLEGGADLHAIQLMMGHESIATTEIYTH-VDRTALRADILRYHPR 298


>gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145]
 gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145]
          Length = 301

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 98/277 (35%), Gaps = 22/277 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH--- 128
           I ++ +       ++ N++ ++ S   +             ++T+  ++  +  R+    
Sbjct: 13  IEQFVEHLWLAHGVSENTQAAYRSDLKKFCEFLAQHRLGLHQVTSTVVQDYLLWRRSQGL 72

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  +FL++M+ L  +A++  +   +P   ++RPK         T+ D+         
Sbjct: 73  SPRSTSRFLSAMKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLLDAPDV 132

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
            +    + R   E L  +GLR ++  R     +      ++          V L +  ++
Sbjct: 133 DTPIGLRDRAMLEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKERLVPLGEEAIE 192

Query: 244 LLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            L+                  FI      +    F    +  A +A +  + S H +R  
Sbjct: 193 WLSRYMKSGRPVLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINSHLSPHTLRHA 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT   + GA    L    G   +   + YT+ A   
Sbjct: 253 FATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKER 289


>gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae 642]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI ++  +      L+ N+R S+ S          + +   I+   + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDSYRSDLALFHGWLQERNVDLISAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +   ++M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGEQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297


>gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 311

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 92/290 (31%), Gaps = 28/290 (9%)

Query: 62  NSPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITT 116
            S R    T L      + +       L+ N+  ++    D  +    + D  +   IT 
Sbjct: 3   ESTRSGAGTALAVASERFLRHLAIERGLSQNTLAAYRRDLDSYLGFLSERDLAEPSAITA 62

Query: 117 KHIRSGVESRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             + +   S +  P      SS  + L+++R L  + V +  V+ +    V  PK+    
Sbjct: 63  DDVAAFAHSLRVDPERPLAASSVARMLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRL 122

Query: 171 IRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            +  T E M    + +        +     E L  +G R S+     V  + +       
Sbjct: 123 PKAITIEQMSSVLASFAGDDVVSLRNTALLELLYATGARVSEVTALNVDDMIDGDVVRLL 182

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKA 275
            K      V +       +    +                F+     +++     +  ++
Sbjct: 183 GKGNKQRIVPVGSFAQAAIEKYLVRSRPVLSAKGTATPALFLGARGARLSRQNVWLIIQS 242

Query: 276 KATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A +   G++ S H  R   AT     GA    +    G  +V   + YT
Sbjct: 243 AAERVNLGLDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYT 292


>gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
 gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 33/289 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122
           LK  + ++          + N+  S++    Q I    ++       +   IT +   + 
Sbjct: 10  LKTYVDKFLYYEEVITGKSYNTIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAY 69

Query: 123 ---------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                     E +  +  S  + ++++R  FK+   ++ V  N    +  PK + E    
Sbjct: 70  LNSTSKENNDERKVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKFEKELPNV 129

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +ED+ + +   +     G + RL  E L  SG+R S+        +      ++    
Sbjct: 130 LGREDINKLRDAVNTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEERELRVIGK 189

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK 279
                     +   K L      K+  + N  K          K+            A K
Sbjct: 190 GNKERITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRLIADYAKK 249

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AG+ K  + H  R   AT   + G     L    G  ++   + YT  +
Sbjct: 250 AGLQKEVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVS 298


>gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 303

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 97/283 (34%), Gaps = 23/283 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITT-KHIRSGVESRK 127
           LI  +  +      L+ N+  S+ S  ++                +   +H  +     +
Sbjct: 13  LIEPFLDALWLERGLSDNTVSSYRSDLEKFAFWLDGQGRSLLLAGMDDIQHYLAWRVDHQ 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
              SS  +FL+++R  +++  R++  + +P + +E PK   +     ++ ++    Q   
Sbjct: 73  FAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQSPL 132

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+      +H+      ++          V + +  +
Sbjct: 133 VDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAV 192

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             L        T           F +   + M    F    K  A +AG+    S H +R
Sbjct: 193 HWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   + GA    +    G   +   + YT  A+     +
Sbjct: 253 HAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKAL 295


>gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 307

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 23/264 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS-GDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
             + N+   +     Q I    G+ +          T +   +   + +    S  + ++
Sbjct: 26  GKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSNNNEVGKRSINRKIS 85

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  F +   Q  V  N  + V  PK + E     TK+D+ + ++        G + RL
Sbjct: 86  ALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRL 145

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITVELPDGFMKL 244
             EFL  SGLR S+        +                  T  +             K 
Sbjct: 146 IIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSENARKWYEKYISAKR 205

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F+N+  +++            A KAG+NK  + H  R   AT   +   
Sbjct: 206 NEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTPHVFRHSFATTLLNNKV 265

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               L    G  ++   + YT  +
Sbjct: 266 DIRYLQELLGHSSISTTQVYTHVS 289


>gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
 gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192]
          Length = 312

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 32/294 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           LI  +     H   L+  +  S+ +        + K G  D    T + IR  V      
Sbjct: 16  LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG-TDLVSATREDIRHCVAEYTLA 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           +  PSS  + L+S+R  +++  ++   + +P   +   K          ++++ +     
Sbjct: 75  RQAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIE 134

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + R   E L  +G R  +        +Q +      +  G     + L  G  
Sbjct: 135 GSDFASLRDRALLEVLYSTGCRVQELVSLTTSGVQVSRGWCVVKGKGGKERLLFLGLGAR 194

Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           K L             M    +   F+N     +     +   + +A + G+ K  S H 
Sbjct: 195 KALAAYLPLRQALLERMGRREEGALFVNQKGSPLTPRGVAYIIERRAREKGLEKRISPHV 254

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            R   AT     GA    +    G  ++   + YT       L +   +R+   
Sbjct: 255 FRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRMYRK 302


>gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
 gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  P+      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
 gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1]
          Length = 300

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125
            ++ + +Y         L+VN+  S+    +  +       G  D+  +    I   +E 
Sbjct: 4   FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVHFLKEAEGMSDFSVVERTTILRHLEQ 63

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +       +  + ++S+R   ++ +R++    +P + +E P  + +     + E+++  
Sbjct: 64  LRAQGKTSRTVARHISSIRSFHQFLLREKRAETDPTVHLEMPTIEQKLPNILSIEEIEAL 123

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
            +  ++    G +     E L  SG+R S+     +  +   +  ++    G     + L
Sbjct: 124 LTAPNKSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPL 183

Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
               +             L       + FFIN   +++         K  A KAG+    
Sbjct: 184 GKSALSAINAYLNGARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT  +   
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288


>gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
 gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 24/268 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPS 131
           Y ++      + N+ IS++    Q+          +   +T   + S +   E      +
Sbjct: 11  YLENE--KKASKNTVISYQRDLVQLAAYLEAKGITEAEKVTKTSLNSYILYLEKEGKATT 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           +  + L S++  F + +R+  +  +P   ++ PK + +     T  ++        + + 
Sbjct: 69  TISRELASIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEVNALLCQPGDRTP 128

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              + +   E L  +G+R S+     +  +   +  I  +       V       + L  
Sbjct: 129 KELRDKAMLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKERMVPFGKNARQALVQ 188

Query: 248 TP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                          +  F N + Q M+   F    K    KAG+  + + H +R   A 
Sbjct: 189 YMGEARTELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSDITPHTLRHSFAA 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
               +GA  H + A  G       + YT
Sbjct: 249 HLIRSGADIHAVQAMLGHSDTATTQIYT 276


>gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLYHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           EDL933]
 gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7
           str. Sakai]
 gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD
 gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933]
 gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai]
 gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501]
 gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli]
 gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588]
 gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M         K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB]
 gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB]
          Length = 297

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126
             L  ++  +     +LA N+  S+      +             +T   ++  +  R  
Sbjct: 4   SDLTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHHQLTLLSVTPLDLQQFLAERLE 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQA 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
            +       + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 124 PNIDIPLELRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         +          F +N  Q+M    F    K  AT AG++    S H
Sbjct: 184 AVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678]
          Length = 300

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R             +   +   +    + 
Sbjct: 10  LIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQD 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + ++ +P   VE PK         ++  + +  S  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 190 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
 gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 30/284 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126
            WL  ++ +      L+ +S  ++     Q+           +  +  +     +    +
Sbjct: 19  SWLDQQWLE----KGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQ 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L++++  ++W  R+  ++ +P L +ERPK      +  ++ D++   +  
Sbjct: 75  GLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E L  +GLR ++        +      I+          V L +  
Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEA 194

Query: 242 MKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
           +  L                 P  +E  F +     M    F    K  A  AGV    S
Sbjct: 195 LHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298


>gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 122/363 (33%), Gaps = 42/363 (11%)

Query: 14  ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + GK +      R   G+ IR     ++      ++ +       +  +       T
Sbjct: 12  YQRKDGKWMGSITIGRDKSGKLIRKAVYGKTK--KEVVTKMDCIKHDIKIGDYVEPDKIT 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   I+ + K+     L   +  S+ES     II   GD   +K+ TK I+     R   
Sbjct: 70  VSEWINYWLKTYKKNKLKPKTYDSYESLSRITIIPHIGDLPMQKLKTKDIQEMYNKRYEE 129

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S+         ++     A+ + Y++ NP   VE P+   + I+ ++ ED + F+   
Sbjct: 130 GYSSNSIHKVNIVLKSALNKAITEGYISKNPANFVELPEIIKKDIKAFSAEDQKAFEQAA 189

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            + S   +A+   L +GLR S+       ++  +   +   K    +     +   KL+ 
Sbjct: 190 KDYSH-YIAYIVNLDTGLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLIV 248

Query: 247 MTPIGKETF-----------------------------FINNDKQKMNATQFSIWFKAKA 277
                K  +                             F +     +    +S  F+   
Sbjct: 249 QENTSKTKYSIRTIPLTKRCISLLRKLKIKQQANSNIVFCSKLGTHLTPRNYSRTFQRIV 308

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIK 334
            KA V   + H +R   AT   +AG     +    G  +V    +TYT    +  +  I 
Sbjct: 309 KKAKVEMCNVHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAID 368

Query: 335 NSR 337
              
Sbjct: 369 MLE 371


>gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR---K 127
           LI  +  +      L+ N+R ++ S          + +   I+   + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDNA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEESI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHARHHPR 297


>gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972]
 gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC
           11218]
          Length = 302

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 102/280 (36%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           L+ ++  +      L+ N+ +S+ +   +++      ++    I+   ++          
Sbjct: 11  LVEQFLDAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYRLDFISLSGLQEYQTWLVDQD 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++  +    S  +
Sbjct: 71  YKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQVDALLSAPN 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENAI 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +        +           F +   Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFLAQGRSHLLGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGIDVDKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii
           ATCC 35469]
 gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
          Length = 298

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
 gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1]
          Length = 297

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 99/270 (36%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137
             LA NS  S++      ++   + D    +  +   +I   +   K+   SA    + +
Sbjct: 16  KGLAKNSVDSYQRDLKNYMKFIQNVDSAESWNDVQRVNITGFLGHLKNEGKSAKTVARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E PK +    +  + ++++       E    G + +
Sbjct: 76  ASIRSFHQFLLREKVTDQDPSIHIESPKMERSLPKVLSIDEVEALLEAPQESSALGIRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+  R  +  +   +  ++          + +    + +L       
Sbjct: 136 AMLEVLYATGIRVSELIRLKMDDVHLKMGFVRCIGKGNKERIIPIGKAAITVLEKYLLEG 195

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      ++ F+N+  + ++   F    K  A +A + K  + H +R   AT   +
Sbjct: 196 RPKLVSKKHKDDSLFLNHHGKGLSRQGFWKILKGLAAEAKITKELTPHTLRHSFATHLLE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G   +   + YT      
Sbjct: 256 NGADLRAVQEMLGHVDISTTQIYTHVTKTR 285


>gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3]
          Length = 298

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATER 286


>gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 130/341 (38%), Gaps = 21/341 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V + R RHGK   Y R        +  P+ +    A ++ L G   K+E   +      
Sbjct: 9   GVKRYRDRHGKWRNYHRATGKP---IKAPYGTAEFAAEVAELNGLVSKKEPPRN-----G 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRK 127
           TL+ ++ EY+ +  +  LA+ +R  +E YF+ I +   D   + I +    +     + K
Sbjct: 61  TLRGVMDEYKTTPAFADLAMATRAGYERYFE-IAKPLHDVPIQSIDSAGLSVIRDKVAMK 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW 186
               +A   L+ + VLF +A+ ++YV  NP   V+R KR     +        ++     
Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWSLEERKAVLA 179

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              S  ++     +++G+R  D+       ++    +    KTG  I + +     ++LA
Sbjct: 180 EAPSHLKVPLALAMFTGVRKRDALTLRKDAIRGGAIAT--SKTGEEIFIRIHPELAEILA 237

Query: 247 MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISAD 299
             P           +      T F+  +     K           + HG+R       AD
Sbjct: 238 GAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGHLAD 297

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           AG     +    G KT+  A+ Y++   +     +   R+ 
Sbjct: 298 AGCDLDTIRRVLGQKTLTMAQLYSERVKKEAATKEAMERMD 338


>gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 398

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 121/365 (33%), Gaps = 49/365 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           RK + + I++    ES  +      L     + E          T K  I ++ K     
Sbjct: 27  RKRYTKTIKVYGKSESAKLKEAEKELAKFVAEIEGNLFVEPSKLTFKAFIEKWLKEYAEN 86

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSS 132
           +LA  +   ++     +II   G     KI   H+   +   K             +P +
Sbjct: 87  NLAPKTLHRYKEMLEKRIIPALGHLKLDKIKPIHVLEFLNMLKEDGARLDGKEGGLSPQT 146

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQ 191
                  +  +F+ AV+ + +  NP  ++E PK   +    + +E++++      +E  +
Sbjct: 147 IKHHYRLIHAIFEDAVKWQLIPSNPASNIEPPKVPKKEAGYYNEEEVRKLIKALENEKLK 206

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------------IIT 234
            ++A    L +GLR  +      +H+      IK ++                       
Sbjct: 207 YKVAVMVTLAAGLRIGELMGLKWEHIDFENNIIKIEQANQYLPGEGTFTKNPKTETSKRL 266

Query: 235 VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           + +P   M LL                  I     F   + Q M    F+ WF     K 
Sbjct: 267 IAMPKEIMDLLREYKKEQNIERLKKGSMWIDTGYVFTQWNGQPMYPYTFTKWFPKFLEKH 326

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
           G+ + + H +R  SAT+  +AG     + A  G          Y             + +
Sbjct: 327 GLRRITFHQLRHTSATLLINAGENVRTVSARLGHSNTSTTMNIYAHAL--KSADRNAADK 384

Query: 339 ISSVV 343
           I++ +
Sbjct: 385 IANYL 389


>gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
 gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
           ++ ++  +      L+ N+  S+ +   +++R     ++    I+   ++          
Sbjct: 11  IVEQFLDAMWMERGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQEYQAWLVDEG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++    +P   +  PK      +  ++E +        
Sbjct: 71  YKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQVDALLDAPD 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +        +           F +   ++M    F    K  A  AG++    S H +
Sbjct: 191 DWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAGIDTEQLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
 gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 101/278 (36%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           +I  Y K     +L+ N+  ++    ++              + T  I + V+  +    
Sbjct: 4   IIEIYIKDLQKKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTVTIMAFVQYLQREGR 63

Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +    +    S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +    
Sbjct: 64  ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAVKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
 gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 100/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           ++ ++  +      L+ N+  S+ +   ++++     ++    I+   ++          
Sbjct: 11  IVEQFLDAMWMERGLSENTLASYRNDLMKLLQWMSSHNYRLDFISLSGLQEYQTWLVDEG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  +++ +        
Sbjct: 71  YKQTSRARMLSAIRRLFQYLHREKRRADDPSALLVSPKLPKRLPKDLSEQQVDALLDAPD 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 131 PNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +        +           F +   ++M    F    K  A  AG++    S H +
Sbjct: 191 DWIETFLQQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDADKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
 gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325]
          Length = 301

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 94/285 (32%), Gaps = 28/285 (9%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRSG 122
            LI  +         L+ N+  S+      +++                  I  +     
Sbjct: 5   ALIELFLNDVWIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPLTLITLDAIDLQTFLGE 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             ++ +  +S  + L+++R LF++  R++Y   +P   +  PK  +   +  T++ +   
Sbjct: 65  RLTQGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL 124

Query: 183 KSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +          + +   E L  +GLR ++     V+++  N   ++          V +
Sbjct: 125 LNAPDVDVPLELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIVPI 184

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
            +     +    +   T           F +    +M    F    K  A  + ++    
Sbjct: 185 GEEATYWIRQFVLYGRTTLLNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDLNSL 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 245 SPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER 289


>gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 306

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  +R      +++ ++R ++ S   Q             T+  I   +        +P
Sbjct: 20  FLQGFRDYLVAQTVSPHTRNAYLSDLIQCSEIHKKNRLPDWTSDDISDVLIELTKVGKSP 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            S  + L+++R  +K    Q+  + NP  +   PK      +  ++ED++          
Sbjct: 80  RSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITT 139

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
             G + R  FE L   GLR S+     ++ +      ++          V L       +
Sbjct: 140 ALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWV 199

Query: 246 AMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                                      M+   F    K  A +A +    S H +R   A
Sbjct: 200 ERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   + YT  A   
Sbjct: 260 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294


>gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
 gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 102/284 (35%), Gaps = 25/284 (8%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS 121
            +   L+ L+ +Y +      +L+ N+  ++ +   +++      G     +++   +  
Sbjct: 2   ARDEALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLG 61

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + S      SA    +   ++R LF+W   ++ V ++P   +  PK   +     ++E+
Sbjct: 62  FLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + +  +        G +     EF+  +G R S++C   +  L  +   +     G+   
Sbjct: 122 VVRLIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQR 181

Query: 235 VE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +               +     L      +   F+N    +++        +  A  AG+
Sbjct: 182 MVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGI 241

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 242 TRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTH 285


>gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis
           ATCC 14580]
 gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2]
 gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580]
 gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSAIQFL 137
             L+ N+ +S+E   +       +      + ++T  HI   ++  K    +  +  + L
Sbjct: 16  RGLSHNTVVSYERDLNSYAAYLEEQEQLSSFDQVTRLHIIQFLKHLKDAGKSGKTVARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++  A +P + +E  K +    +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLLDTPKLTGPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     +  +  ++  I+          V L +     +       
Sbjct: 136 AMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKERIVPLGEAASHAVGEYLSKA 195

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                    ++  F+N+  ++M+   F    K  A +AG+NK  + H +R   AT   + 
Sbjct: 196 RGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGINKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 381

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 116/376 (30%), Gaps = 54/376 (14%)

Query: 17  RHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK     Y     G+R +       T   A  + L     + E       K  TL+  
Sbjct: 7   KRGKTYSIVYDINQGGKRKQKWESGFKTKKEA-EAILAQRINEIEKGTYINPKKDTLEDY 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------- 126
           +  +  +     L+ ++   +E      +I   G+    K+    I+  +          
Sbjct: 66  LIRWFDTHKA-DLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELEGGRQD 124

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    + +S       +      AV  + ++ NP   V+ PK + + +   +++D+
Sbjct: 125 NKKTVGAGLSAASVNYEYRVLHKALNQAVDWQLISRNPADLVKVPKPEKKDMVVLSEQDI 184

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233
            +  +   +     +     +Y+G+R  +   +  + +  N   +  ++    +      
Sbjct: 185 ARLLNEIKDN-YLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSVRQASCQVKADDPE 243

Query: 234 -------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                      +    +  +               D + +N   
Sbjct: 244 FKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDNNLVCALQDGRPINPPS 303

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            S +F+  A++ G+  S H +R   A++   AG     +    G  T+      Y+    
Sbjct: 304 LSSYFRRVASRIGLFVSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDIYSHVMP 363

Query: 328 RIRLGIKNSRRISSVV 343
              +  + + ++  ++
Sbjct: 364 G--MQRQAANKLDDML 377


>gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
 gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205]
          Length = 306

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 19/271 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAI 134
           +R      +++ ++R ++ S   Q           + ++  I   +        +P S  
Sbjct: 24  FRDYLVAQTVSPHTRNAYLSDLIQCSDLHDTVVLTEWSSDDIADVLIVLTKHGKSPRSIA 83

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190
           + L+++R  FK+   Q+    NP  + + PK      +  ++ D++   +        G 
Sbjct: 84  RCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKDLSEHDVEALINAPDISTALGL 143

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT- 248
           + R   E L   GLR ++     ++ +      ++          V L     + +    
Sbjct: 144 RDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGKGNKERLVPLGQYACEWVEKYL 203

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                       +  F+      M+   F    K  A +A +    S H +R   AT   
Sbjct: 204 SESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANISAELSPHTLRHAFATHLL 263

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT  A   
Sbjct: 264 NHGADLRVVQMLLGHSDLSTTQIYTHVAQHR 294


>gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893]
 gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893]
          Length = 310

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 24/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            L   +R ++ S  +++        G     ++    + S +          S+A + L+
Sbjct: 31  GLGEKTRQAYRSDLERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTSTAARRLS 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194
            +R  F++ +R+  +A +P L ++ P+         +++D++              + + 
Sbjct: 91  GLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDDVENLLSEPDPEVPIELRDKA 150

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             E L   GLR S+     V  +      ++          V L +  +  L        
Sbjct: 151 MMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEAVDWLVRYMREGR 210

Query: 254 TF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                       F  N    M    F    K  A +AG++K  S H +R   AT   + G
Sbjct: 211 GELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTLRHAFATHLLNHG 270

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 271 ADLRVVQMLLGHSDLSTTQIYTHVARQR 298


>gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
 gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048]
          Length = 280

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 95/271 (35%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128
           L      Y+        +  +  ++   ++ ++R  GD +  + TT+ ++          
Sbjct: 3   LSEAWERYQLDKKIEGYSPLTLKTYCFQYNLLLRYFGDINMSEFTTEKLKGYLIEAGEHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W   + ++  NP   ++ PK   +  +  ++ +++  +     
Sbjct: 63  KPSSLGHRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREACH- 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
            S     FEFL  +G R  +  +     +  +    I   K      V         L  
Sbjct: 122 NSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIWLKR 181

Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                              K++M+        K  + +A + KS   H +R   AT   +
Sbjct: 182 YLDERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +    Y + + ++R
Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272


>gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 98/285 (34%), Gaps = 26/285 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG- 122
            T +  I  Y+       SL+ NS  ++ +   ++ +   D         I+  H++   
Sbjct: 1   MTWEDAIESYKTYLILEKSLSSNSVEAYLNDIKKLAKYCADKHHVTTPDAISYDHLKDYL 60

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +     T  +  + ++S+R  +K+ V    +  NP   +E PK   +     T E++ 
Sbjct: 61  MFINEVGVTNRTQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEID 120

Query: 181 QFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSI 224
                   +  E  + +   E L   GLR S+     + ++                  I
Sbjct: 121 AMLNSVEMYKPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMI 180

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              K       +    +   L +    ++  F+N     ++        K  AT+AG+ K
Sbjct: 181 PLSKNAKQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKK 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             S H  R   A+     GA    +    G +++   E YT   D
Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDD 285


>gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           natto BEST195]
          Length = 296

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 95/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+        +  ++  ++          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108]
 gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108]
          Length = 291

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +         + T       ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +  + + +     + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFL-KIQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 297

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 29/287 (10%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           ++   I   + +      L+ N+  ++                       ++    +R  
Sbjct: 6   SVDAFIDALWLEE----GLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHA 61

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++A + LT ++  F+WA+R+ ++A +P L ++  K+     +  T+  ++   +  
Sbjct: 62  ETKATTANRRLTVLKRFFRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQVEALLNAP 121

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
                 G + +   E L  SGLR S+     +  L  N   ++                 
Sbjct: 122 DTNEALGIRDKAMLELLYASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKERLVPFGEVA 181

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                  +  P   +     +     T   +     M+   F    K  A +AG+    S
Sbjct: 182 GLWLSRYLAGPRAELLAAKQSADVFVTVRGSKSGTAMSRIMFWGLVKRYALQAGIRVPLS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H +R   AT   + GA    +    G   +     YT  A R RL 
Sbjct: 242 PHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIA-RDRLA 287


>gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7]
          Length = 307

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
             +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    +
Sbjct: 20  EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKS 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
             S  + L S+   F W +   Y   NPC S++ PK      +  +++++          
Sbjct: 79  ERSIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + +   E L   GLR S+     ++HL         T K   +  + L +  +  
Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           L                 +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
 gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD
 gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5]
          Length = 296

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+        +  ++  I+          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175]
 gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183]
 gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175]
          Length = 300

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R             +   +   +    + 
Sbjct: 10  LIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQD 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + V+ + ++ +P   VE PK         ++  + +  S  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + +   E L  +GLR S+     ++ +      ++                  
Sbjct: 130 VEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAI 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
           T +   +     +LL                       F    K  A +AG+    S H 
Sbjct: 190 TEVESYMKFARQELLGNKQSDVVFPSKRGQMM--TRQTFWHRIKLYALRAGIETALSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis
           12822]
 gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis]
          Length = 310

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 95/307 (30%), Gaps = 35/307 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110
           ++P      L   I   + +      LA N+  ++        +   +            
Sbjct: 4   SAPLASQADLDAFIDAVWLED----GLAANTLAAYRRDLSAFAQWLENPACHPGLATGHS 59

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R+     I +   +R      ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +          +    + R   E L  +GLR S+        +  N   +
Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179

Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
           +    K G    V L       +                    F+    + M+   F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERL 299

Query: 331 LGIKNSR 337
             +  + 
Sbjct: 300 KALHAAH 306


>gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
 gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4]
          Length = 300

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 99/291 (34%), Gaps = 28/291 (9%)

Query: 67  KPTTLKWLISEYRKSA-HWGSLAVNSRISFE---SYFDQIIRKSGDFDY--RKITTKHIR 120
              T   LI  +         L+ N+  ++     + D+ ++K G       ++  +   
Sbjct: 3   DKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYL 62

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +    +    +S+ + ++S+R  + + + ++ +  +P   +E PK   +     ++ED+ 
Sbjct: 63  AERFDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDID 122

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
           +  +   E      + +   E L  +GLR S+     ++ L      ++           
Sbjct: 123 RLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                  T I   L     +LL               +       F    K  A +AG+ 
Sbjct: 183 PLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQM--TRQTFWHRIKLYALRAGIS 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              S H +R   AT   + GA    +    G   +   + YT  A   RL 
Sbjct: 241 TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290


>gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC
           BAA-895]
 gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQSDDLQTLLAERMDGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++ R  F+   R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSATRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLLQSPVV 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland]
 gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra]
 gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613]
          Length = 291

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 103/278 (37%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           +I  Y K     +L+ N+  ++    ++      +       + T  I + V+  +    
Sbjct: 4   IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63

Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +    +    S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  + 
Sbjct: 64  ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
 gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70]
          Length = 283

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 90/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
            +LA N+  ++      ++           T +      + +      +  +S+ + L++
Sbjct: 4   KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 63

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLA 195
           +R LF++  R+++   +P   +  PK      +  ++  +++             + +  
Sbjct: 64  VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 123

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++          V L +  +  L         
Sbjct: 124 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 183

Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           +          F +   Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 184 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A   
Sbjct: 244 ADLRVVQMLLGHSDLSTTQIYTHVATER 271


>gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 291

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           +I  Y K     +L+ N+  ++    ++      +          +T       ++    
Sbjct: 4   IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTVTIMAFVQYLQREGR 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS ++ + S+R  +K+ +++  ++ +P L  E PK +    +  + E++ +  +    
Sbjct: 64  ATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRS--GV 123
            K  I++Y+        L+ N+  S+    +++ +     D      KI  + ++     
Sbjct: 3   WKNAINDYQLFLKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYD 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++   P S  + ++ +R  F + V +++   NP   +E PK   +     +++++    
Sbjct: 63  VAKGVNPRSQARIISGLRSFFDYLVFEDFRETNPTDLIEAPKIGRKLPDTLSEDEINSLI 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                   +G + R   E L   GLR S+     +  L  +  F   T K      V + 
Sbjct: 123 QSIDLSHPQGERNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKERFVPIH 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285
               K +                 +                     K  A K  +NK  S
Sbjct: 183 YNAQKYITTYIHQIRNQVKPVKSFEDTLFLNRRGKGLTRQMIFTILKDLAIKIDLNKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT     GA    +    G +++   E Y  
Sbjct: 243 PHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVH 281


>gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
 gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries]
          Length = 312

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 106/298 (35%), Gaps = 35/298 (11%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           +  +  + +S      ++ N+  S+ S  + +    G  + R +       +     + S
Sbjct: 4   ERYLDAFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNS 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R ++P++  + ++++R L+ +      +  +P  +++  K      +  T +++ +    
Sbjct: 64  RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCA 123

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230
                  EG +       L  SG+R S+    G   +++ +   ++              
Sbjct: 124 AGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRE 183

Query: 231 ----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                       I   L      ++      +  F      Q ++  +     KA A  A
Sbjct: 184 RLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVA 243

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           GV+    S H +R   AT   + G+    +    G  ++   + YT  A DR++  ++
Sbjct: 244 GVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301


>gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
 gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGASLATAQSDDLQALLAERMDGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S+ + L++ R  F+   R++Y   +P  S+  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969]
 gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 96/379 (25%), Gaps = 55/379 (14%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +  +GK       G   +G   R  +  ++         +            P     T
Sbjct: 20  YKMSNGKFRGQLTIGYNENGSPKRKSFTGKTK--KEVSDKMKAFYVDNNRGLLPTDDKIT 77

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR-- 126
           L      +  +     L  +S   +E  +   I     G      + T HI++   S   
Sbjct: 78  LSQWFYTWLFTYRIHDLKPSSFERYEGLYRNYIEFSSLGKIKLIDLRTHHIQAYYNSLVA 137

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQF 182
               +PS+       ++     A+++ Y+  N C  +  PK                QQ 
Sbjct: 138 EKGKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGPETSKETINIFTLEEQQT 197

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                  ++  + +   L +GLR  +        +      I   K              
Sbjct: 198 FMRECMNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNR 257

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------- 267
                           TV L +  ++LL      +     +N +   +            
Sbjct: 258 EFQIIEQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIYFDNNLVFSTPIGNY 317

Query: 268 ----QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    FK    K  +     H +R   AT   + G     +    G   +      
Sbjct: 318 LNESNVRKTFKRILKKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNI 377

Query: 322 YTKGA-DRIRLGIKNSRRI 339
           YT    D     I     +
Sbjct: 378 YTHVMKDTKDKAIDKLNFL 396


>gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
 gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC
           43183]
          Length = 316

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 25/293 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TP 130
            +Y K      L+ N+  ++ +   +++      + +   +T   ++            P
Sbjct: 21  QQYLKLEKA--LSPNTLDAYMTDLQKLLHFLEGENIEIPDVTPDDLQRFAAGLHDIGIHP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S  + L+ ++  F + V  +Y   +P   +E PK         T E++ +         
Sbjct: 79  RSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVDMEK 138

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
            EG + R   E L   GLR S+ C   +  L     F     K G    V +    +K +
Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQRLVPISPRAIKEI 198

Query: 246 AMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                           ++  F+      ++        K  A KAG+ K  S H  R   
Sbjct: 199 KYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKNISPHTFRHSF 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT   + GA    +    G +++   E YT   DR RL  +        +   
Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRLRSEIIEHHPRNIKYR 310


>gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 297

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  S+     Q    ++K G   + K+    ++  + + K T    ++  + +T
Sbjct: 18  KGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVT 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R L ++  R+++   +P L +E P+   +     + E++    +     +    + + 
Sbjct: 78  TLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248
             E L  SG+R ++    G+  +  ++  ++          V L     K L        
Sbjct: 138 MLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGR 197

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    +  F+N+  + ++   F    K  A  A + K  S H +R   AT   + G
Sbjct: 198 GALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDFSPHTLRHSFATHLLENG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT      
Sbjct: 258 ADLRSVQEMLGHADLSTTQIYTHVTKTR 285


>gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
 gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1]
          Length = 301

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 26/284 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
               + EY     +  + +  +   ++   +  I         D++ +    +R  +   
Sbjct: 4   FDKYVQEYLDVLKYQKNYSSLTIDGYKREIEHFIVYLNKENICDFKDVRYPFLRGYLAQL 63

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +P +    ++S+R L+++   Q Y+  NP L ++  K+          ++M    
Sbjct: 64  HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G + +   E +  SGLRCS+     +  +      +    K      V   
Sbjct: 124 DSIDTQTLLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDRYVPFH 183

Query: 239 DGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNK 284
           D     L                +  +  F+N +  KM              +  A    
Sbjct: 184 DYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYDATKKV 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             H  R   AT   + G     +    G   +   + YT   ++
Sbjct: 244 HPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQ 287


>gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032]
 gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 296

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S++      +          D + +T  HI   ++  K    S+    + L
Sbjct: 16  RGLSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +
Sbjct: 76  SSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     +  +   +  I+          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
 gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583]
          Length = 294

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 23/271 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127
           I E+ +  H     + N+ +S+E    ++ +     G  ++ +++   +      +E + 
Sbjct: 5   IQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKN 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + + S+R  F++  ++E    NP   ++ PK + +     T +++    S   
Sbjct: 65  FAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPK 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E +    + R   E L  +G+R S+     ++ +   +  +   ++     +        
Sbjct: 125 ENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKT 184

Query: 244 LLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            +                    F+N   + M+   F    K  A  AG+  + + H +R 
Sbjct: 185 AVEAYMAWARVELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A      GA    +    G   +   + Y
Sbjct: 245 SFAAHLVQNGADLKSVQEMMGHSDISTTQIY 275


>gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis
           UMN179]
          Length = 297

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 96/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           LI+ +        +L+ N+  S+ S    +           +++    +++ +  R    
Sbjct: 6   LINLFLDELWLGKNLSQNTIASYRSDLKFLSEWLEKHHLTLQQVQYLDLQAFLGERLQQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  +S  + L++MR LF++  +++Y   NPC  +  PK      +  T+  +    +   
Sbjct: 66  YKATSYSRMLSAMRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDLLNTPA 125

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
              +   + +   E L  +GLR S+       ++      ++          V + +   
Sbjct: 126 TENALELRDKAMLELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLVPIGEEAN 185

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +    +               F +   + M    F    K  A+ A ++    S H +
Sbjct: 186 YWVQQFILYGRAELLGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDADKLSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER 285


>gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
 gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 26/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125
            ++ + +Y         L+VN+  S+    +  +       G  ++  I    I   +E 
Sbjct: 4   FQYAVEDYIHFIQVERQLSVNTLASYRRDLESYVNFLQNAEGMANFNHIERTTILRHLEQ 63

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +       +  + ++S+R   ++ +R++    +P + +E P  + +     + E+++  
Sbjct: 64  LRVQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEAL 123

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
            +  +     G +     E L  SG+R S+     +  L   +  ++    G     + L
Sbjct: 124 LTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKERIIPL 183

Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
               +             L       + FFIN   +++         K  A KAG+    
Sbjct: 184 GKSALSAISTYLNNARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHEL 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R   AT   + GA    +    G   +   + YT  +   
Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR 288


>gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 314

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 100/276 (36%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
           K ++S YR+        +VN+  ++    D++ R         +  K     H  + +  
Sbjct: 8   KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +  
Sbjct: 68  LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E L   GLR S+     + +L      I+          V +   
Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L+     +    I          N   Q +  T   I  K  A +AG+ K+   H 
Sbjct: 188 ALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 297

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 100/299 (33%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +    + +         + N+  ++   F+Q I+  GD +  +IT   I     + +   
Sbjct: 3   VSECCNLFLSYMA--DKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQN 60

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L S+  LF++ +  E V+ +P     RPK   +     + E++++      
Sbjct: 61  RKSSTIARKLASINSLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLIDAL- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230
           +  Q +      L +GLR S+       ++                              
Sbjct: 120 DSIQDKAIVVLFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVV 179

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                   V +    +++L         F   N     ++        K    K  +   
Sbjct: 180 GKGDKEREVPITGKPLEILVQYLKSINEFLDDNEYIFPISYHLLWRKIKNIGKKLAITLH 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +AT++  +GA    +    G  +      Y K   + +L +K ++ +S  +D
Sbjct: 240 PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK-VGQKQL-LKATKALSENID 296


>gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
 gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002]
          Length = 323

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 88/293 (30%), Gaps = 18/293 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
                       T+ +  I+ Y +S      + ++R ++      +    G  D   +T 
Sbjct: 9   PDPSPEQSVPSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGAQDPATLTA 68

Query: 117 KHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + IR  V           S  + L++ R  F W + QE +  NPC  +  PK      + 
Sbjct: 69  QQIRLAVARLHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKA 128

Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNI 221
              +                  + +  FE L   GLR S+     +  L         + 
Sbjct: 129 LPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHG 188

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              KT+                 +  +  G+   F     ++++  Q     +  A + G
Sbjct: 189 KGNKTRILPIGRQARQALERWLAIRPSQPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHG 248

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              +   H +R   A+    +      +    G   +   + YT   D   L 
Sbjct: 249 SDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYT-SLDFQHLA 300


>gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
 gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 33/301 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +  + +        A N+   +    +      G     +  + HI   +          
Sbjct: 7   LENFLEMLAAERGAAENTLAGYRRDLEDFSDFLGRTKLAEANSDHISGYMSDLTRRGFAE 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179
           +S  + L++++  +K+   +     +P  ++  PK++    +  + +++           
Sbjct: 67  TSQARRLSALKQFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLIETARQQT 126

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITV 235
               +  +      +     E L  +GLR S+         L++        K G    V
Sbjct: 127 KVSHKSAAAALRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLV 186

Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            L       + M                 F  +     +    F    K  A  AG++  
Sbjct: 187 PLSHAAQSAMKMYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAIAAGLDAS 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
             S H +R   A+     GA    +    G   +   + YT   D R+R  ++ +  ++ 
Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306

Query: 342 V 342
            
Sbjct: 307 K 307


>gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
 gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221]
          Length = 312

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 98/287 (34%), Gaps = 24/287 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126
             +  +         LA N+  S+     Q        G   ++ +  + + +       
Sbjct: 15  EAVESFLVWLELERGLATNTVQSYAQDLCQFASFLHRAGIGSWQAVEAEQVSAWTAELAV 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS  + L+++R+  +  VR++  A +    V  PK++       ++E++    +  
Sbjct: 75  GYARSSQARKLSAVRMFARHLVREQIRADDFTELVSAPKQRRSLPEVLSREEVDLLLNAP 134

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E    SGLR S+ C   +Q +  +   ++          V +    
Sbjct: 135 SMSTPHGLRDRAILELFYSSGLRVSELCGLPLQSVNLDEGFLRVYGKGSKERVVPIGAAA 194

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  L        + F+              Q ++     +  K  ATK G+ K    H +
Sbjct: 195 VAALKDYLAVGRSQFVQAKTGSEVFLSQRGQAISRKMVWVMIKQHATKVGIKKPIKPHLL 254

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           R   AT   + GA    +    G   +   + YT      RL  +++
Sbjct: 255 RHSFATHLLEGGADLRAIQEMLGHADISTTQIYT-AVQANRLADEHA 300


>gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 298

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR  F+   R++    +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3]
 gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153]
 gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US]
 gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
          Length = 302

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 105/303 (34%), Gaps = 26/303 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV 123
            T K L+ +++    +    +  +  ++ +   Q         G   ++++T++ I   +
Sbjct: 1   MTKKSLLEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNGGFNGFKQVTSRDIEIYI 60

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S   T    +S  + L+S++  +K+  R+  V ++P  +V   ++  +    + + +++
Sbjct: 61  ASLASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIK 120

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IK 225
           +     S       + +  FE    +G+R S+     ++ +  ++               
Sbjct: 121 KVLDSLSASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYV 180

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                    +       + L          F++N   ++ +       +    K G+  N
Sbjct: 181 PFGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R   AT   + GA    +    G +++   + YT      RL     +      
Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVT-MERLQKDYEKFFPRNK 299

Query: 344 DSD 346
             D
Sbjct: 300 GKD 302


>gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
 gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto]
          Length = 291

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           +I  Y K     +L+ N+  ++    ++      +       + T  I + V+  +    
Sbjct: 4   IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63

Query: 132 SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +    +    S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +    
Sbjct: 64  ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894]
          Length = 319

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128
           I ++  +     +LA NS  ++      ++           T +      + +      +
Sbjct: 29  IEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGY 88

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             +S  + L+++R LF+   R++    +P   +  PK      +  ++  +++       
Sbjct: 89  KATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTV 148

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 149 EEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 208

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +N  ++M    F    K  A  AG++    S H +R
Sbjct: 209 WLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLR 268

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 269 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 307


>gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 302

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 28/288 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSG 122
            T    I ++     +  + + N+  ++     ++   +     G     +I+ ++I+  
Sbjct: 2   MTWTEKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPL-EISYENIQEY 60

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +      K +  S  ++++S++  FK+    E    NP   +E PK         + ED+
Sbjct: 61  LFQLSKQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDV 120

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234
           ++     +     G + +   E L   GLR S+     + ++           K      
Sbjct: 121 ERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRF 180

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN 283
           V L     KL+        + +  N K             M+     I  K    KAG+N
Sbjct: 181 VPLATYTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN 240

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           K  S H  R   AT     GA    +    G  ++   E YT   +  
Sbjct: 241 KKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEE 288


>gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
 gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2]
          Length = 328

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 12/267 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           I  +  +     L+  +  S+    +   +K        ITT  IR  + S +H   SS 
Sbjct: 55  IQLFLSAKKLEGLSKVTLDSYLLELNTFSKKV-KKRVEDITTAEIRVFLGSFEHLKLSSV 113

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + L+ ++  F W   +E++  +P   ++ PK++    +  + E+++  +       + R
Sbjct: 114 SRKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKALSIEELELLRESCKTN-RQR 172

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G R S+        + N   S +          V      M  L    + +
Sbjct: 173 AFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYHLRKYLMNR 232

Query: 253 ETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                          ++++           A +AG++K  S H +R   AT++ + GA  
Sbjct: 233 TDDCEALMVTERKPYRRLSQRGIQREISIIAKQAGLDKKISPHTMRHTFATLTLNNGADI 292

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             + A  G +     + Y +  +  + 
Sbjct: 293 AAVQALLGHEDPATTQIYAQLTEEKKR 319


>gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 294

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 23/271 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127
           I E+ +  H     + N+ +S+E    ++ +     G  ++ +++   +      +E + 
Sbjct: 5   IQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKN 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + + S+R  F++  ++E    NP   ++ PK + +     T +++    S   
Sbjct: 65  FAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPK 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237
           E +    + R   E L  +G+R S+     ++ +   +  +   ++     +        
Sbjct: 125 ENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKT 184

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                  + +   +     E  F+N   + M+   F    K  A  AG+  + + H +R 
Sbjct: 185 AVEAYMAWARAELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A      GA    +    G   +   + Y
Sbjct: 245 SFAAHLVQNGADLKSVQEMMGHSDISTTQIY 275


>gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 291

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +         + T       ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +  + + +     + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFL-KTQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
 gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF]
          Length = 294

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 24/274 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131
           Y K+     L+ N+  S++    Q        D   I      + +             S
Sbjct: 11  YLKNEKH--LSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKEGRAAS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWS 187
           +  + L S+R  + + +  + V I+P  ++E PK   +          +  +QQ  +   
Sbjct: 69  TISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQPLNTTP 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +G + +   E L  +G+R ++     ++ +  N+  I+         + +    +  L  
Sbjct: 129 KGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCCNNTKERVIPIGTLSLIALQK 188

Query: 248 TPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                   F           N    ++    F    K    +A + K  + H +R   AT
Sbjct: 189 YINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITPHTLRHSFAT 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + GA    +    G   +   + Y +     
Sbjct: 249 HLIENGADLKSVQEMLGHSDISTTQVYAQLTKHK 282


>gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
 gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057]
          Length = 317

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 104/297 (35%), Gaps = 25/297 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128
           +I +Y +      SL+ N+  ++ +  ++++R       D   +T   ++          
Sbjct: 16  IIRKYNQYLKLEKSLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              +EG + R   E L   GLR S+ C   +  L  +  F     K      V +    +
Sbjct: 136 LSTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           K +      +   +                  ++        K  A KAG+ K  S H  
Sbjct: 196 KEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026]
 gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412]
 gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
 gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412]
 gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302]
 gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1]
 gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 96/279 (34%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128
           I ++  +     +LA N+  ++      ++              +  +++ +  R    +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
 gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061]
          Length = 296

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAI---QFL 137
             L+ N+ +S++      +          D + +T  HI   ++  K    S+    + L
Sbjct: 16  RGLSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R   ++ +R++    +P  ++E  K + +  +  +  ++++     ++ +    + +
Sbjct: 76  SSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     +  +   +  I+          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+  +KM+   F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 196 RSKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 369

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 112/334 (33%), Gaps = 28/334 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G+  Y       +R   P           ++           +  P  +     +   
Sbjct: 8   KKGRRYYVVIPIGHKRKWFPAGTTKREAEKVLAEKLAELNAGSSVLPPEVR---FSFFCE 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
           E+      GS+  ++   +E       + + GD    +ITT  ++  V  R  + +P++ 
Sbjct: 65  EWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTV 124

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           +Q +  ++ +FK A    Y+  NP  +++RP+R+ + I   T E+++       E    R
Sbjct: 125 LQEVVLLKEMFKHAQSWGYIKHNPAQNLQRPRREKKEIDILTPEEVEFLLENTHE--HYR 182

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------SIKTQKTGTIITVELPDGFMKLL 245
           +AF   + +GLR  +        +  +                T              +L
Sbjct: 183 VAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVL 242

Query: 246 AMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                  E     N               +    + +FK    +AG+   S H +R  +A
Sbjct: 243 VEELKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNA 302

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +I   AG     +    G  +++   + Y    +
Sbjct: 303 SIRIRAGQNIKYIQRQLGHASINTTLDIYGHLFE 336


>gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
 gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12]
          Length = 317

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 105/313 (33%), Gaps = 35/313 (11%)

Query: 59  EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKI 114
           E+  +P     T+       + +      L+ N+  ++      + R           + 
Sbjct: 9   EWPPAPEACAATIDRFCDALWLED----GLSPNTLAAYRRDLTLMARWLAFSRRPPLIEA 64

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T + +++ + +R  +   +S+ + L  +R  ++WA+R+   + +P L ++  ++     +
Sbjct: 65  TLRDVQAYIAARFVQSKATSSNRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPK 124

Query: 173 PWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227
             ++  ++   +     +    + R   E L  SGLR S+     V  +  +        
Sbjct: 125 TLSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQFS 270
           K G    V         L           +                       M    F 
Sbjct: 185 KGGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFW 244

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  KA A KAG+    S H +R   AT   + GA    +    G   +   + YT  A R
Sbjct: 245 MRIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-R 303

Query: 329 IRLGIKNSRRISS 341
            RL   ++R    
Sbjct: 304 ERLKTLHARHHPR 316


>gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 295

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 96/278 (34%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             LI ++         L+ N+  S++             G       T  HI   +   +
Sbjct: 2   DSLIDQFIHFLTVEKGLSRNTLESYQRDMVAFTSYLQEQGVTRVEDSTRTHIIGYLLVLR 61

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + + S+R  +++ +R +Y+  +P + +E PK +    +  + E++++   
Sbjct: 62  EKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERLLE 121

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + +   E L  +G+R S+        +  ++  +K   K      + L  
Sbjct: 122 SPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERIIPLGS 181

Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             ++++           +          N+  +++    F    K  A K+ +    + H
Sbjct: 182 VAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAEITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT   + GA    +    G   +   + YT  
Sbjct: 242 TLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHV 279


>gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N]
 gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 314

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 31/294 (10%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           +   I   + +      LA N+  ++        R              + +   I +  
Sbjct: 21  IDAFIDALWLED----GLAANTLAAYRRDLSAFARWLQQTGQAASGQLCEASGGDIEAWF 76

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P++A + L ++R  + WA+R++    +PCL +   ++     +  ++  ++ 
Sbjct: 77  AVLHQDSRPATANRRLATLRRFYAWALREKRTGTDPCLKLAAARQPLRVPKTLSEAQVEA 136

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITV 235
                  G+    + R   E L  +GLR S+        +  +   ++  +        V
Sbjct: 137 LLGAPDLGTPRGLRDRAMLETLYATGLRVSELVELQTLDVSLSDGVVRVVQGKGGKDRLV 196

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
            +       L                    F+    Q M+   F    K  A +A V   
Sbjct: 197 PMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSRQAFWQLVKKYAQRADVHAP 256

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            S H +R   AT   + GA    +    G   +   + YT  A      +  + 
Sbjct: 257 LSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAH 310


>gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
 gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1]
          Length = 297

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPS---SAIQFL 137
             LA N+  S++      +R     +      ++T  HI   +   K       +  + +
Sbjct: 16  KGLAENTIASYKRDLHSYLRYLQKVELVTSWNEVTRFHILHFLNFLKQQGKSSKTIARHV 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194
            S+R   ++ +R+++   +P + +E PK +    +  + ++++   +     +   +   
Sbjct: 76  ASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQEVEALLAAPKGDTPLHMRDG 135

Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+     +  L  ++  IK          + +       L       
Sbjct: 136 AMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKERIIPIGRTASAALERYLKEG 195

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                      +  F+N+   +++   F    KA A KA + K  + H +R   AT   +
Sbjct: 196 RPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKANIEKDITPHTLRHSFATHLIE 255

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G   +   + YT  +   
Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTHVSKTR 285


>gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
 gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A]
          Length = 297

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 23/278 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
            L  +Y  +     L+  +  ++     Q+ +   D   +  T      + +    R ++
Sbjct: 10  ELFIDYLWTQV--GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQVLAQFHDRGYS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187
            +S  +  +S+   F + + Q+    NP   + R K +    +  ++ D++   S     
Sbjct: 68  HTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDVQ 127

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
              G + R   E L   GLR S+     +  +  +  +     K      V   +   + 
Sbjct: 128 TILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEW 187

Query: 245 LAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
           L                 +  F++     ++   F    K      G++    S H +R 
Sbjct: 188 LQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT  AD+ 
Sbjct: 248 AFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQR 285


>gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC
           8739]
 gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKH 128
           I ++  +     +LA N+  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYCRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
 gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633]
          Length = 294

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 90/261 (34%), Gaps = 25/261 (9%)

Query: 90  NSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT---PSSAIQFLTSMRVL 143
            +  +++   +Q +    +       ++T   +R  +          SS  +FL+S+R  
Sbjct: 2   KTVEAYQRDIEQFLMFLKEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSSLRSF 61

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFL 199
           +++ +  ++V  NP  S+   K +      + +++M++F            + R   E L
Sbjct: 62  YQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASIDGNQPLDQRNRALIEVL 121

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA------------ 246
             +G+R S+     +Q L      I    K      V + D   + L             
Sbjct: 122 YATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYLEESRSSLMS 181

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                  + F+N+    +  T           ++G+      H +R   AT   + GA  
Sbjct: 182 QYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFATHLLNNGADM 241

Query: 305 HELMATYGWKTVDQAETYTKG 325
             +    G  ++   + YT  
Sbjct: 242 KTVQELLGHVSLSSTQIYTHV 262


>gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
 gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1]
          Length = 296

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH-- 128
           L+  +         LA N+ I++    D +       +    +I  + +   +       
Sbjct: 6   LMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGELAQKS 65

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            TPS+  + L++MR LF+  V +   + +P   V RPK + +     ++ + +       
Sbjct: 66  LTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLYAPD 125

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G +     E +  +GLR S+     +  L      ++          V + +   
Sbjct: 126 TSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMGEAAT 185

Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           +++                    F++N    M    F    K  A +A +    S HG+R
Sbjct: 186 EMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKPLSPHGIR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   E YT  A+  
Sbjct: 246 HAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANAR 284


>gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDQFLDTLWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG++KS   H +R
Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGISKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 18/285 (6%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVES- 125
           L+  I  Y        + +  + +++ S  +Q    +G     D   +T + +R  +   
Sbjct: 26  LETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRGL 85

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + +S  + L+++R    +   Q  +  +P L +  PK      +  T++ + +  
Sbjct: 86  SGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRLI 145

Query: 184 SF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
           S        ++ R   E    +GLR ++        L     +     K      V    
Sbjct: 146 SAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVPYGQ 205

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM-----NATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                LA                                +A +  AG    S H +R   
Sbjct: 206 WAASALAEWKAQCPPSEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPGASPHTLRHCF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           AT   + GA+   +    G +++   + Y + + +R+R    +  
Sbjct: 266 ATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVN 310


>gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319]
 gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319]
          Length = 314

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
            ++S YR+        + N+  ++    D+++R     +   +  K        + +   
Sbjct: 9   DIVSRYRRYLKLEKGHSANTLDAYMRDLDKLLRYLAAENIDVLKVKLEDLEFFAASISDL 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  + L+ +R  +++ V   Y+ ++P   +E PK+        +  ++   +   
Sbjct: 69  GIGPRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAI 128

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + R   E L   GLR S+     + +L      ++   K      V +    
Sbjct: 129 DLSKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISPRA 188

Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           ++ L+     +    I          N     +  T   I  K  A +AG+ K+   H +
Sbjct: 189 LEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    + A  G +++   E YT 
Sbjct: 249 RHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
 gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466]
 gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034]
 gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037]
 gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030]
          Length = 305

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE---SR 126
            L+ ++  +      L+ N+  S+ +   +++       +    I+   ++         
Sbjct: 13  ALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQEYQTYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++    G     V + +  
Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                    F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 VDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
 gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 74/263 (28%), Gaps = 12/263 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           L   I EY +          +  S+ S     +   GD    ++  +     V  R    
Sbjct: 14  LSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYEDYVKWVRKRMKEG 73

Query: 130 -PSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            P S  +   + +    +    VR     +        PK + + +     E++      
Sbjct: 74  FPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVEALKPEEVAALLQA 133

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKL 244
             E     L    LL +GLR S++    +  +      I    K G    V       + 
Sbjct: 134 AYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEA 193

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           L                  ++        K  A KAG+       H +R   AT +   G
Sbjct: 194 LRRAWSYIAPSGRLV---PLSYQALYKRLKRLAKKAGLPEHKLHPHALRHTFATEALRRG 250

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
            +   +    G   +   + Y  
Sbjct: 251 MSLPAVQRLLGHSDIKTTQIYLH 273


>gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125]
 gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD
 gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 93/269 (34%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+  S+     Q I+           R IT + I   +   +       S  + +
Sbjct: 19  RGLSNNTIQSYGRDLKQYIQYVERVEEIRSARNITRETILHYLYHLREQGRAETSIARAV 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
            ++R   ++ +R++    +P + VE PK      +  T E+++   +          + +
Sbjct: 79  AAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEALLNSPQGRDPFSLRNK 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246
              E L  +G+R S+     +  +  ++  ++   K      + +     + +       
Sbjct: 139 AMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKERIIPIGQVATEAVESYLANG 198

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               M     +  F+N+  + ++   F    K  A    ++K  + H +R   AT   + 
Sbjct: 199 RGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNIDKPLTPHTLRHSFATHLLEN 258

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 259 GADLRAVQEMLGHADISTTQIYTHVTKTR 287


>gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
 gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5]
          Length = 312

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
              A+    PK   ++            I+E+R++     LA  +R ++          +
Sbjct: 3   RDRAVQQRQPKALAVDDEPA-------YITEFRQAMLARGLATRTRNAYVRDLRS-CELT 54

Query: 107 GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                 +   + +   +        TP +  + L+S+R  + W +       NPC  ++ 
Sbjct: 55  NHTALTRWQPEDVLHCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKS 114

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           PK      +   + D+    +        G + +   E L   GLR S+     ++ +  
Sbjct: 115 PKLGRPLPKDLAEADVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNL 174

Query: 220 NIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMN 265
           N      T K      V L +     L                    +  F+      M 
Sbjct: 175 NSGWLQITGKGNKTRLVPLGEYAADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMT 234

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F    K  A  A ++K  S H +R   AT   + GA    +    G   +   + YT
Sbjct: 235 RQNFWYLLKKYAKVASIDKDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYT 294

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
                       + R+  +     P
Sbjct: 295 HV---------ATARLQKLHAEHHP 310


>gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485]
 gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 99/284 (34%), Gaps = 27/284 (9%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125
             ++++    A    ++ N+  ++ +  +Q+     +    +    +  + +        
Sbjct: 3   QYVAQFLAYLADERKMSANTTAAYRTDLEQLCSFLQERGIEQWNDVNTEAMLAFVITLKE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           +K+  S+  + L +++  F +   +  V  +P   ++ P+      +  ++  + +    
Sbjct: 63  KKYANSTVARRLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLEL 122

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
               +   EG + +   E L  +G+R S+     +  +     +++              
Sbjct: 123 PLQNNSGPEGLRDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERILPLS 182

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
                 +   L     KL        E  F+N+  +++    F +  K  A +AG+ + +
Sbjct: 183 EAALTALEEYLDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLHDLT 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   A      G    EL    G  ++   + YT   +  
Sbjct: 243 PHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEEE 286


>gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202]
 gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202]
          Length = 301

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 96/289 (33%), Gaps = 24/289 (8%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
           K   +L  ++ ++  +      L+ N+  S+       +    +   +  I    ++  +
Sbjct: 3   KSAPSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLILFMEWLDESRAFLTIDHHALQEFL 62

Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             R      A    + L+ +R  F++   + Y   +P   +  P++ +   +   +E + 
Sbjct: 63  GYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVM 122

Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
                 +       + +   E L  +GLR ++      ++L      ++           
Sbjct: 123 DLLDCPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLV 182

Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                    ++    + + + +        F +   Q M    F    K  A  AG++  
Sbjct: 183 PLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSE 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             S H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 290


>gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810]
 gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus
           10329]
          Length = 305

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SR 126
            L+ ++  +      L+ N+  S+ +   +++       +    I+   ++         
Sbjct: 13  ALVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQEYQTYLVDL 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +       
Sbjct: 73  DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                   + +   E L  +GLR ++     ++++      ++    G     V + +  
Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192

Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  +                    F +   ++M    F    K  A  AG++    S H 
Sbjct: 193 IDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC
 gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 301

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHT 129
            I+ +          + ++  ++++  ++        +  K+    IR  +     +  +
Sbjct: 7   YITNFLNHIKLQKGDSSHTLRAYKNDLEEFFN-FAKVEPEKVEPIVIRGFISEQILKGKS 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + L+++R  F +   + ++ INP   V   K K    +  T +D  +     SE 
Sbjct: 66  KTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVEAPSED 125

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244
                + +   E    SG+R S+ C   ++ L           K      V +     + 
Sbjct: 126 KFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVPVGQKAKEA 185

Query: 245 LAMTPIGKE-------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           L      ++               FINN  Q+++  Q     +  A   GV      H +
Sbjct: 186 LKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVLEKIGPHTL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   A+     GA    +    G  ++   + YT   D   L
Sbjct: 246 RHTFASHLLMEGADLRVIQELLGHASLSTTQIYTH-VDLKHL 286


>gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38]
 gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38]
          Length = 299

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 99/304 (32%), Gaps = 34/304 (11%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE 124
           T +  I EY+        L+ N+  ++    ++++      D +     I+ + I+  + 
Sbjct: 3   TWQSYIKEYQNYLRLERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY 62

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    S  + ++ ++  F + V ++Y    P   +E PK   +       E++   
Sbjct: 63  EIASKVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLATEEIDAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +       EG + R   E L   GLR S+     +  L      IK          V +
Sbjct: 123 IAAIDLSTPEGERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKITGKGNKQRFVPV 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS- 285
               +K +          +                 ++         K  A K  +NK+ 
Sbjct: 183 GGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIKDLAVKINLNKTI 242

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H  R   AT   + GA    +    G +++   E Y    DR          +S V++
Sbjct: 243 SPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMH-LDRK--------FLSEVLN 293

Query: 345 SDDP 348
           +  P
Sbjct: 294 NYHP 297


>gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 384

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 104/350 (29%), Gaps = 21/350 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60
           P         G+  Y  +   GRR   I L      T   A   A+       +      
Sbjct: 27  PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPTTVLTCEQARTRAITIVAAARNGQDPAA 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
                +K  T+K L   + K      L  ++   +     +  +   G      IT   +
Sbjct: 87  ERDAGRKAITIKELAERFDKEHIAIRLKASTGKEYRRNLQRFILPALGQLTVTGITRADV 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
                  +H P  A + L  +  +F  +                 K   E    +     
Sbjct: 147 AKFHHDLRHIPYQANRCLEVISKMFSLSEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                E +++ ++   E     LA   L+ +G R ++       ++  ++ +++   + T
Sbjct: 207 LRRIGEVLREMEAEGVELPSAILAARLLILTGCRLNEIISLKWSYVDFDVPALRLPDSKT 266

Query: 232 IITVELPDGFM-KLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288
              V      + +LL          ++          +    +++    +AGV +   H 
Sbjct: 267 GAKVVHVGQPVVELLRDAQRIDGNPWVIAGTLPGKPLSDLQPFWQRVRARAGVKDVRIHD 326

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           +R   A+ +  +G     +    G   V     Y    A+ +R+      
Sbjct: 327 LRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVA 376


>gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
 gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato K40]
 gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 306

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                +  ITT+++R  +E     
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITTENVRDWIEYLATN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + ++A NP L+V+ PK + +     + + ++      
Sbjct: 62  DLQARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  +        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39]
 gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39]
          Length = 292

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 96/272 (35%), Gaps = 27/272 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVESRKHTP 130
           Y K      L+VNS  ++ S   ++          +D +++ T  +    S V      P
Sbjct: 6   YLKLERA--LSVNSISAYISDVKKLFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGMLP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            +  + ++ ++  F +   ++ ++ +P  S+E P+   +       E++           
Sbjct: 64  VTQARVISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSK 123

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245
            EG + R   E L   GLR S+  +  + ++  N  F     K      + +    +K +
Sbjct: 124 AEGLRSRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGSAALKYI 183

Query: 246 AMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            M               ++  F+N     +         K  A  AG+ K  S H  R  
Sbjct: 184 MMYINEVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    +    G  ++   E YT 
Sbjct: 244 FATHLIEGGADLRAVQEMLGHSSITTTEIYTH 275


>gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1]
          Length = 307

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
             +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    +
Sbjct: 20  EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKS 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
             S  + L S+   F W +   Y   NPC S++ PK      +  +++++          
Sbjct: 79  ERSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + +   E L   GLR S+     ++HL         T K   +  + L +  +  
Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           L                 +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 303

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 99/282 (35%), Gaps = 31/282 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVE 124
             I+ + +        +  ++ ++++     +                 +  +   + ++
Sbjct: 6   DWINLFLQYLIVDRHYSPETQKAYQADIKAFVDFLAANGGLTSFKQVGTLEVQTYLNEMD 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K++  +  + ++S+R  +++ +R E++  +P  +V+  K++ +  R + +++M    +
Sbjct: 66  QKKYSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEMDALFA 125

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + R   E L  +G+R S+  +  +  +   +  I    K      V   +
Sbjct: 126 AIVGQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKGNKDRYVPFGN 185

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN 283
              K L                   +  F+N+    + +           K     +G++
Sbjct: 186 HATKALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLTSGIH 245

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              H +R   AT   D GA    +    G  ++   + YT  
Sbjct: 246 --PHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHV 285


>gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +++ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATTSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 323

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 92/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRK-ITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+        + ++    D    + I  +   +      
Sbjct: 32  LIEQFLDTIWLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVIELQSFLAERVDGG 91

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
           +  SS+ + L++MR LF++  R++    +P   +  PK      +  +++ +        
Sbjct: 92  YKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNTPL 151

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           +      + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 152 TDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKERLVPLGEEAV 211

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L         +          F +    +M    F    K  A  A ++    S H +
Sbjct: 212 YWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEIDAERLSPHVL 271

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 272 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 311


>gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 297

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 17/292 (5%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV--- 123
           L + +  Y +   +  S+++ +  ++    +Q +    +       ++ T+ IR  +   
Sbjct: 7   LSFALDYYLEQMRFAKSMSMYTIENYAVDLNQFVNYLLEQNVTLLSEVDTRIIREYLRVL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S  +  SS  + L++++  F + V ++ V  +P  +V+ P+      R  + E + +  
Sbjct: 67  ASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRLPRALSVEQVSRLI 126

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                 S    + +   E L   GLR  +      + +      ++ +        + + 
Sbjct: 127 EVGCAKSADPLRDKAVLELLYGCGLRIGELVVLRWEDIDFAERWVRVRGKGNKERMIPVG 186

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
              +K L       +        +    +            A +AG+   + H +R   A
Sbjct: 187 KMAIKALYNWRDSCQMGIFLFTGEEGSHLTVRTVGRIVDRAAKRAGLSGVTPHMLRHSFA 246

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           T   + GA+   +    G +++   + Y        L              D
Sbjct: 247 THMLEGGASIRVVQELLGHESLITTQRYL-TVTAEHLKQSYIEAFPRTRGDD 297


>gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
 gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522]
          Length = 296

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 98/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
             L+ N+  ++       I+         D  +I    I   +   K     P++  + +
Sbjct: 16  RGLSKNTTEAYNRDLTAYIQYIESHENKKDVNEINRPAIMQYLYFLKDNGRAPTTITRNI 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+R   ++ +R+   + +P + + RPK++ +  +  +  +++   S   +      + +
Sbjct: 76  SSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVEALISASVKNPALNIRNK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+ C+  +  L  ++  I+          + + +   K L       
Sbjct: 136 AMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGNKERIIPIGNVATKALETYLQKS 195

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+   KM+   F    K  A +A + K  + H +R   AT   + 
Sbjct: 196 RPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEANIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHVDISTTQIYTHITKTR 284


>gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 318

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 25/291 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129
            +I  Y +      + + N+  ++    + ++  +   +    ++  + + +   S    
Sbjct: 4   EIIKNYMRYLKLGRNFSKNTLDAYYHDLNFLLEYADKNNLVLTEMKLEDLENFSASLHDR 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA    + L+ +R  +++ V  +Y+  +P   +  P+         + E++   ++  
Sbjct: 64  GVSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLEAAI 123

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                EG + +   E L   GLR S+        +      I+          V +    
Sbjct: 124 DLEKWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKERIVPISGKA 183

Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +K + +  I +    I          N     +      I  K  A  AG+ K+   H +
Sbjct: 184 LKEINLWYIDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYDAGIKKTISPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
           R   AT     GA    + A  G + +   E YT    +D  R  +++  R
Sbjct: 244 RHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPR 294


>gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
 gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia]
 gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida]
          Length = 312

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 105/295 (35%), Gaps = 35/295 (11%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           +  + +S      ++ N+  S+ S  + +    G  + R +       +     + SR +
Sbjct: 7   LDAFLESLLSGRCVSPNTSSSYRSDLENLAEFLGRRNLRMVDASAADLRAYVRSLNSRGY 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           +P++  + ++++R L+ +      +  +P  +++  K      +  T +++ +       
Sbjct: 67  SPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGS 126

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
               EG +       L  SG+R S+    G   +++ +   ++                 
Sbjct: 127 DLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLI 186

Query: 231 -------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                    I   L      ++      +  F      Q ++  +     KA A  AGV+
Sbjct: 187 LLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVD 246

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
               S H +R   AT   + G+    +    G  ++   + YT  A DR++  ++
Sbjct: 247 PKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301


>gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
 gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 24/288 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128
            I E+ ++      L+ N+  ++        +            ++T   + S   +R  
Sbjct: 2   AIDEFCETVWLEDGLSQNTLDAYRRDMQLFAQWLEKNGPGTRLLEVTPDILNSYFLARHS 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               +SA + LT ++  ++   R   +A+NPC  +   K+        ++  ++      
Sbjct: 62  ESKATSANRRLTVLKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQVESLLIAP 121

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQKTGT 231
                 G + R   E +  SGLR S+     +  +  N              +       
Sbjct: 122 RVENPLGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRLVPFGEEA 181

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            I +E      +   +     +  F+      M    F    +  A ++G+    S H +
Sbjct: 182 RIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHEPLSPHTL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT   + GA    +    G   +   + YT  A +    +    
Sbjct: 242 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIH 289


>gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
 gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 81/265 (30%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  S+     + I    +        I    +       K       S  + L 
Sbjct: 18  RGLSANTLESYARDLQRYIGFLEERHINDVIAIRQNDVLDFFTELKEQGMGVRSRARLLA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R    +AV +  +A NP   +  PK         +  D+        +G     +   
Sbjct: 78  ALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADVDALLDINDDGQALTRRDIA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------------M 242
             E L  +G+R S+     +  L  N   ++    G+   +                   
Sbjct: 138 MLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGEIAIDTLRDYLARVR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L          F+N   + +    F    K +A +AG+ K  + H +R   AT   + 
Sbjct: 198 PELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTPHTLRHSFATHLLEN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G   +   + YT  
Sbjct: 258 GADLRVVQMLLGHVDISTTQIYTHV 282


>gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
 gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            L  EY        LA N+++++      +++      D +  +++ + + + +   K  
Sbjct: 6   ALFQEYLT--VELGLAKNTQLAYMRDLRLLMKSLQLKADEELLQVSRQQLIAYLVRLKQE 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A    + L S++  +++   + Y+  NP   +E   R     +  + +++++     
Sbjct: 64  GRAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241
           + G+    + +   E L  +G+R S+     V+++   +   I   K      + L    
Sbjct: 124 NLGTLDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLPLGRTA 183

Query: 242 MKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           +  L                      F+      M   +F     A    AG++K  + H
Sbjct: 184 LHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISKRVTPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + G     +    G   +   + YT   D  RL
Sbjct: 244 MLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTH-LDVERL 286


>gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus
           HTA426]
 gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + +R     +         ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +        G + +
Sbjct: 76  ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+  +  +  +   +  ++          V +    ++ LA      
Sbjct: 136 AMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+  Q++    F    K  A +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286


>gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12]
 gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12]
          Length = 305

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 99/300 (33%), Gaps = 36/300 (12%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
           LI  +         L+ N+  ++ +      R   +   +  +++ + IR  ++ R    
Sbjct: 15  LIDIFLDDLWSNRGLSDNTLAAYRTDLRHFDRYIQELGAELVQVSQELIRGYLDVRFDKG 74

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
              +S+ + ++S+R  F + + ++ +  +P   ++ PK   +     ++ D+    +   
Sbjct: 75  FARTSSARMMSSLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADVDILLNEPD 134

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + R   E L  +GLR ++     ++ L      ++                  
Sbjct: 135 IQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGELAV 194

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           + +   L     +LL                       F    K  A +AG+  + S H 
Sbjct: 195 SEVENYLQGARAELLKGKLSDVLFPSKRGQMMA--RQTFWYRIKLYALRAGIVTHISPHT 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G   +   + YT  A           R+S +     P
Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 303


>gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
 gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           LI  +         L+ N+  ++ +      R          ++    +R+ +  R   +
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLIEVGQADVRAYLAYRVEQQ 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238
                  + +   E L  +GLR S+     ++ +      ++    G     V +     
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAI 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290
               + L+           ++          M    F    K  A++AG+    S H +R
Sbjct: 190 TEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888]
          Length = 309

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 28/277 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR---KHTPSSAIQFLTS 139
              + N+  ++    +  +    D       + T++I+  + +       P+S  + L++
Sbjct: 22  RGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGTQNIQGYIAAMANAGQAPTSRSRRLSA 81

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------------SFWS 187
           ++  +++   +  +  +P   ++ PK++    +  +  ++ +                  
Sbjct: 82  IKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLSIAEVDRLLDASQKRCEGVEGRAMF 141

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
              +     E L  +G+R S+        L+ +        K G    V L       L 
Sbjct: 142 RALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIKGKGGRERLVPLNAEARAALD 201

Query: 247 MTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296
                   F  +            M   +F+   K  A +AG+     S H +R   A+ 
Sbjct: 202 RFLEVSGRFDNSPWLFPSKSASGHMTRQRFAQDLKDVAAEAGIGGDRISPHVLRHAFASH 261

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             D GA    +    G   +   E YT         +
Sbjct: 262 LLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKAL 298


>gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 107/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI ++  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDQFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +AI+P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEIHAKHHPR 297


>gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str.
           McKiel]
 gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 308

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 34/286 (11%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS  S++                +  ITT++IR+ +E     
Sbjct: 2   EFISQFLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITTENIRNWIEYLADN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
                S  + +++++  +++ + + + A NP L+V+ PK +++     + + +       
Sbjct: 62  DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQIKSLLEYC 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------SIKTQKTGTIIT 234
            +    EG +       L  SGLR S+     +  +  N              K      
Sbjct: 122 SQDATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKGNKERV 181

Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281
           + + +      +K LA+  +        N             M    F++  K+ A  AG
Sbjct: 182 IIINEQAVISIVKYLAIRDVFLNKAKPKNLIYLFPSSAIAGYMTRQNFAMLLKSAALYAG 241

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 LNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287


>gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVDNA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
 gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1]
          Length = 317

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 24/301 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD 110
              R       + P      I  +         LA N+  S+    DQ        G  D
Sbjct: 2   KAPRARAQDTSQAPPAFADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARD 61

Query: 111 YRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           +R +T +     + S     +T +S  + L+++R L  + VR+ + A +    +  PK  
Sbjct: 62  WRAVTGEQAAGWIHSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKAS 121

Query: 168 TEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                  T+E++ +  +  + G     + R   E    SGLR S+     +Q +      
Sbjct: 122 RRIPGTLTEEEIARLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGF 181

Query: 224 IKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIW 272
           ++    G     V +    ++ LA         F+          N +   ++     + 
Sbjct: 182 LRVFGKGAKERVVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWML 241

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A +AG+ K+   HG+R   AT     GA    +    G  ++   + YT    +  
Sbjct: 242 VKKYAKRAGLTKNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRL 301

Query: 331 L 331
           L
Sbjct: 302 L 302


>gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 26/284 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKH 128
            +++Y+        L+ NS  S+     +++             +I    ++  +     
Sbjct: 6   ALNDYQNYLKIERGLSENSISSYSLDIQKLLLFLETNKIVTSPIQIDKHIVQQFIYEISK 65

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  + ++ ++  F + V ++Y   NP   +E PK   +     +++++    +  
Sbjct: 66  DVNPRSQARIISGLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEINDLIAAI 125

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTG 230
           +    EG + R   E L   G+R S+     +  L                  +      
Sbjct: 126 NLSTPEGERNRAILETLYGCGVRVSELINLKISDLFFEEDFIKVTGKGDKQRFVPISDIN 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
                   +     L +    ++  F+N   +++         K  A K  + K+   H 
Sbjct: 186 KKYINLYKNEIRVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAIKIDLKKTISPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            R   AT   + GA    +    G +++   E Y    DR  L 
Sbjct: 246 FRHSFATHLLENGADLRAIQQMLGHESITTTEVYMH-VDRSHLA 288


>gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
 gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 25/287 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+ +    + +            + I  +   +      
Sbjct: 9   LIEQFLDTIWLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSIDLQSFFAERIDCG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++   +  +
Sbjct: 69  YKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+        +      I+          + L +  +
Sbjct: 129 TEDALELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEAI 188

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L                    F +    KM    F    K  A  A ++    S H +
Sbjct: 189 YWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHIDSELLSPHVL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           R   AT   + GA    +    G   +   + YT  A +R+R+  + 
Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQ 295


>gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD
 gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD
 gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
 gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7]
          Length = 300

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 99/281 (35%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           LI  +         L+ N+  ++ +      R          ++    +R+ +  R   +
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVGQADVRAYLAYRVQQQ 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238
                  + +   E L  +GLR S+     ++ +      ++    G     V +     
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAI 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290
               + L+           ++          M    F    K  A++AG+    S H +R
Sbjct: 190 TEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
 gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC
           29799]
          Length = 298

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 92/275 (33%), Gaps = 23/275 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTP 130
             Y K+    SL  N+  S+     Q                +   +     +  +  + 
Sbjct: 14  ESYLKTEKKASL--NTLSSYLRDIHQYAGWLEGESLTAEQANQADVERYVKHLSGKGKSV 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
           ++  + L SM+  + + +    V INP   +   K + +  +  T +++  F        
Sbjct: 72  ATVTRSLASMKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILTSKEVDLFLEQPDPSD 131

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +G + +   E L  +G+R S+     ++H+  +   ++         + L    ++ L 
Sbjct: 132 AKGCRDKAMLELLYATGIRVSELIGLNLEHVNLSAGFVRCVGRSKERIIPLYPAAVRALT 191

Query: 247 MTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                     I +  +          +M+   F    K    KAG+ K  + H +R   A
Sbjct: 192 AYMTQVRPQMIEHPDEKALFVNMNGERMSRQGFWKIIKHYQEKAGIRKDITPHTLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + GA    +    G   +   + Y +  ++ 
Sbjct: 252 AHLLENGADLRSIQEMLGHADISSTQIYAQLVNQK 286


>gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
 gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069]
          Length = 295

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 103/282 (36%), Gaps = 27/282 (9%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR- 126
           ++    + + +      L+  +  S+ S      +       D  + +   I+  +  R 
Sbjct: 6   IEQFCDQVWME----QGLSDATLSSYRSDLKLFNQWLQKQGKDLLRSSPFDIQQYLAERY 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++  S  +FL+S R  +++ ++   + ++P   ++ PK +    +  +++++    S
Sbjct: 62  TKQYSSRSTARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLS 121

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                   G + +   E L  SGLR ++     V  +      ++          V + +
Sbjct: 122 QPDLETALGLRDKAMLELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGE 181

Query: 240 GFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ +++               +  F++   Q+M    F    K  A  AG+ K  S H
Sbjct: 182 EALQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    L    G   +   + YT  A   
Sbjct: 242 TLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKER 283


>gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502]
 gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
 gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397]
 gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall]
          Length = 291

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 103/278 (37%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           +I  Y K     +L+ N+  ++    ++      +       + T  I + V+  +    
Sbjct: 4   IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQREGR 63

Query: 132 SAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +    + ++   R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +  + 
Sbjct: 64  ATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
 gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181]
          Length = 295

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126
           +I ++         L+ N+  S+           G+       D  ++  +   +     
Sbjct: 5   IIDDFIDHLWLEDGLSKNTLNSYRFDLIIFDSWLGEQKKIAMMDVSELEIQEFLAFKFPS 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L ++R  F++ +R++ +  +P L ++ PK      +  ++E+++      
Sbjct: 65  SKS-RSISRLLATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLLDAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGF 241
           +     G + R   E L   GLR ++       + + ++     T K      V + +  
Sbjct: 124 NLDSSSGLRDRSMLELLYACGLRVTELVDIQLTEVILSDGVIRVTGKGSKTRLVPMGEEA 183

Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  +                 +  F+ N    M    F    K  A  A +NK  S H +
Sbjct: 184 VDWIKKYIAEARDDILRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIANINKPMSPHIL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 244 RHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVA-RERL 284


>gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
 gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881]
          Length = 312

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 30/284 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126
            WL  ++ +      L+ +S  ++     Q+           +  +  +     +    +
Sbjct: 19  SWLDQQWLE----KGLSEHSLSNYRRDISQLAVWLQHQQATLLACERYQLLEFLAARHQQ 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L++++  ++W  R+  +A +P L +ERPK      +  ++ D++   +  
Sbjct: 75  GLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------- 228
                 G + R   E L  +GLR ++        +      I+                 
Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERLVPLGEEA 194

Query: 229 -TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                   +     +         +E  F +     M    F    K  A  AGV    S
Sbjct: 195 LHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298


>gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
 gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1]
          Length = 319

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 98/312 (31%), Gaps = 39/312 (12%)

Query: 65  RKKPTT---LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTK 117
                T   +   I++Y +       LA N+  ++     +    +   G      IT  
Sbjct: 3   EAATRTANGVDRAITDYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPGSITRH 62

Query: 118 HIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           H+ + V++              SA + + ++R L K+   +     +P   V  P     
Sbjct: 63  HVTAFVQALSDGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKR 122

Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218
             +  +  ++ +        +    + R   EFL  +G R S++    V  +        
Sbjct: 123 LPKAISVGEVTRILEAAGSDTATGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGD 182

Query: 219 ----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                     +    +     G             LLA    G    F+N    +++   
Sbjct: 183 PAIVRLFGKGSKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQS 242

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KG 325
                K  A KA +  + S H +R   AT   + GA    +    G  +V   + YT   
Sbjct: 243 AWTILKTAAEKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT 302

Query: 326 ADRIRLGIKNSR 337
           AD +R     + 
Sbjct: 303 ADTLREVYAAAH 314


>gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
 gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ IS+E    + +    + +         ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIISYERDLKKYVHYLREVEQLEAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +     +    + +
Sbjct: 76  ASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQTNTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+  +  +  +   +  ++          V +    ++ LA      
Sbjct: 136 AMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRKERIVPIGRMALEALARYLEYG 195

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+  Q++    F    K  + +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286


>gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25]
 gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25]
 gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127
           L+ ++  +      L+ N+  S+ +   +++       +    I+   ++          
Sbjct: 14  LVEQFLDAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQEYQSYLVDLD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAV 193

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTEQLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916]
 gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 291

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           +I  Y K     +L+ N+  ++    ++      +          +T       ++    
Sbjct: 4   IIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQREGR 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS ++ + S+R  +K+ +++  V+ +P L  E PK +    +  + E++ +  +    
Sbjct: 64  ATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPDS 123

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKL 244
             +G + +   E +  +G++ ++     +  +      IK + +      + +    +K 
Sbjct: 124 SKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKC 183

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +    + N           +M    F    K  A +A ++K   ++ +R   A
Sbjct: 184 LKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEAFIDKEIDSYTLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 GA    +    G K +   + Y+  + + ++ 
Sbjct: 244 VHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 281


>gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 337

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 100/307 (32%), Gaps = 25/307 (8%)

Query: 41  STFIPAYMSALTGSTPKREYI---NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
                       G   + E +   +   +   T + L+  + +     +L  ++   + S
Sbjct: 8   RELQRKSKRGRRGELSREELLLISDDIGEIEYTFEELLEIFIEDCELRNLREHTIKYYRS 67

Query: 98  YFDQIIRKSGD----FDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
             +  ++   +        + T     +++   ++ +     S    L ++R  F +   
Sbjct: 68  ELNAFVKLLKEQEIELRVSEWTGETIKRNVIMYMKEKGLKTVSINSRLRALRAFFNFLEG 127

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205
           +  +  NP   ++  + +   +  +  + ++            G +       LL +G+R
Sbjct: 128 RNLIKSNPMKDIKLLRDRKRIVETFDNQQIKALFKACDLRTFVGLRDYTIMMLLLETGVR 187

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTP-----IGKETFFIN 258
            ++        +      I+ + T       V + D  +  L         +  +  FI 
Sbjct: 188 VNELVSIKTTDIIWEQKVIRIRNTKGGFERFVPIQDKMINQLKKYIAVRGSVDTDYLFIT 247

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            D   ++  Q     K    KAG+     S H  R   A +    GA A +L A  G  +
Sbjct: 248 RDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTS 307

Query: 316 VDQAETY 322
           ++  + Y
Sbjct: 308 LEMTKVY 314


>gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
 gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 85/294 (28%), Gaps = 26/294 (8%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               +L       + +      L+ N+  ++                  + T        
Sbjct: 21  ASSASLDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNA 76

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +K   +SA + L+  R  + WAVR+    ++P L +   K+        ++  ++
Sbjct: 77  YSAVRQKDKSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVE 136

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                    +    + R   E +  SGLR ++        +  N   ++          +
Sbjct: 137 ALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 196

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+ N  + M   QF    K  A  AGV   
Sbjct: 197 PFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAP 256

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            S H +R   AT   + GA    +    G   +   + YT  A      +    
Sbjct: 257 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMH 310


>gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus
           buchneri ATCC 11577]
          Length = 385

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 104/357 (29%), Gaps = 47/357 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +     Y F  G  +G+R R+      T   A  +               +     ++
Sbjct: 7   RKKGNNWYYAFDTGTVNGKRSRIERYGGKTKKQAEATLRQALQKYENDGAVVKLTNMNVQ 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                + ++     L  N++I++ +     II K G+F  R I    +++ V     T  
Sbjct: 67  QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 125

Query: 132 SAIQFLTSM---------RVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            A   +  +         + ++ +          I      +  +   + ++  T    +
Sbjct: 126 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           Q  S     +   +  +    +G+R  + C     ++  N  +++ ++            
Sbjct: 186 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWANVDLNGHTVEVKQAMMQEPKGKFSI 245

Query: 233 ---------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQF 269
                                +         + L       E+ F+   +    +     
Sbjct: 246 VTPKTTSSYRTISIGESLVDLLKQHKKHQIEERLRYGQYYHESNFVCTKENGSPVTPNTI 305

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                    + G   + H +R   AT+  + GA   ++ A  G   +     TY+  
Sbjct: 306 KYQCDRIQKELGFPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSHV 362


>gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4]
 gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169]
 gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1]
 gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1]
 gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1]
 gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8]
 gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72]
 gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E]
 gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 21/274 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
             +SE+R +     L++ +R ++     ++  +  D          +R+ +   K    +
Sbjct: 20  EYLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDTPVNLWQPSDVRNHLMCLKDAKKS 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
             S  + L S+   F W +   Y   NPC S++ PK      +  +++++          
Sbjct: 79  ERSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDIS 138

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G + +   E L   GLR S+     ++HL         T K   +  + L +  +  
Sbjct: 139 SVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYALSA 198

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
           L                 +  F+      M    F    K  A  AG+N   S H +R  
Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   + GA    +    G   +   + YT  A
Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292


>gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
 gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031]
          Length = 304

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 96/279 (34%), Gaps = 26/279 (9%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
           + ++  +        + + N+R+S+ +  ++ +            IT   IR  +     
Sbjct: 9   RNVLESFLNYMLIERNFSENTRVSYRNDLERYLLFMQQNAISLESITPNQIREFITELYL 68

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T    SS  + ++++R L K+ + +   +INP  ++ +PK+        T ++  +    
Sbjct: 69  TGLEASSLARNISAIRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLLEA 128

Query: 186 WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  +G+R S+      Q+L      ++          V +
Sbjct: 129 PLLQNPQSKYFLRDKTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKERLVPV 188

Query: 238 PDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                + +                 +  F+N   + ++        +  A  AG+ K  S
Sbjct: 189 GSAATEWITRYQRELRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIEKQIS 248

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G  ++   + YT 
Sbjct: 249 PHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTH 287


>gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
 gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599]
          Length = 342

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 90/307 (29%), Gaps = 29/307 (9%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSG 107
                  + I        +    +  + +      L+ N+  ++          +   + 
Sbjct: 36  AQIDAVAQRIRQADADIQSFSDAL--WLED----GLSKNTLQAYRRDLVQLARWLAPSTR 89

Query: 108 DFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                + +   + +          PSSA + LT ++  ++  +R+     +P L +   +
Sbjct: 90  GVALAEASEADLLAYLADAHGHGKPSSANRRLTVIKRFYRHLLREGRRQDDPTLRIRAMR 149

Query: 166 RKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +        ++  ++   +        G + R   E L  +GLR S+     +  +    
Sbjct: 150 QPARFPATLSEAQVEALLAAPDVETALGLRDRAMLEVLYATGLRVSELVGLKLSEVSMVD 209

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFS 270
             ++          V L +     L                    F+      M    F 
Sbjct: 210 SLVRIVGKGSKERLVPLGEEARAWLVRYLQEARPRLLGARQAEAVFVTQRATGMTRQMFW 269

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +  A +AG+    S H +R   AT   + GA    +    G   +   + YT  A  
Sbjct: 270 VLIRRHALRAGIEAQLSPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARA 329

Query: 329 IRLGIKN 335
               +  
Sbjct: 330 RLKALHA 336


>gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 107/357 (29%), Gaps = 47/357 (13%)

Query: 17  RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK  Y         G  ++  L              AL           +   +  T 
Sbjct: 7   KKGKKYYIVVDIGVVDGKRKQKWLGGFETKAEAEE---ALPRILNIIYQNKNKLLEQKTF 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SR 126
             L+  +  +     +++++  S+ S     I    G+++  K+T   ++   +     +
Sbjct: 64  GELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGEYELGKLTPMDLQKYYQHVMTEK 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + + A+     +     +AV+ + +  NP   V+ PK++      W +E +++     
Sbjct: 124 GLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKALE-I 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--- 243
            +G+  R+     +Y+G+R  +      + +      I   KT   I  +          
Sbjct: 183 FKGTNIRIPVLLAIYTGMRIGEIAALKWEDINLEQGYITVNKTFMKINGQTYIKEKAENK 242

Query: 244 ----------------------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                        L      +       D +  +    +  F+ 
Sbjct: 243 NSYRIVAISNQVVSELKEWKAKQEKLKEELKELYHDEGFVCTFEDGRVQDPKYITKVFQK 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              K  + K   H +R   A+I    G     +    G  T+      Y+   D  R
Sbjct: 303 TIEKHKLPKIRFHDLRHTHASILLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKR 359


>gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 381

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 19/344 (5%)

Query: 14  ERTRHGKIIYYF--RKGHG-RRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPR 65
              + G+  Y+   R     RRI +      T   A   A +               +  
Sbjct: 31  RIRKSGRKSYFVMSRYKGRMRRITIGQHGPLTAEDARKQAKSILHDLSSGIDPTEDKTKI 90

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           ++  T+K L   +        L  ++   ++   +  I+ K G    + ++ + I +   
Sbjct: 91  RQSGTVKKLCERFMIEYVPQHLKPSTASEYKRSIEIFILPKLGRLIVKDVSRQDIIALHH 150

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             + TP  A + L  + +LF  A                 K + E    +   +  Q   
Sbjct: 151 DMRGTPYQANRTLGVLSILFSQAEVWGLRDEFTNPCRGIKKFREEKRERFLSLEELQRLG 210

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL 237
                  +         + L+ +G R  +  +    H+  +   +     KTG       
Sbjct: 211 RALHEETALAPSAVACIKLLILTGCRLGEIQKLKWVHVDLDRQLLLLPDSKTGKKTIYLG 270

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                 L +        F I   KQ    T     ++     A + +   H +R   A+ 
Sbjct: 271 TSAVDLLKSTPRQLDNPFVIAGYKQGQYLTDLQKPWRRIRKAANLEDVRIHDLRHTYAST 330

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +   G +   +    G         Y   AD     ++ + +IS
Sbjct: 331 AVANGESLPMIGKLLGHSQPQTTARYAHLADIQ--AVEVADKIS 372


>gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
 gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium
           moorei F0204]
          Length = 307

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 97/298 (32%), Gaps = 31/298 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126
            +  +  + +  A   + + ++  ++    ++ +    +        +T   +   +   
Sbjct: 3   FEKSLDRFLRQIARVRTGSKDTENAYRRDVERFLEYLREHRIDSFEHVTKTDVSDYITQL 62

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         + SS  + L+S++  +++  R E +  NP    +    + +     T + 
Sbjct: 63  RDGEIGGKPLSNSSYARNLSSLKSFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQ 122

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
           M+   + +        + R   E +   GLR S+     +  +           K     
Sbjct: 123 METMLNQFDLHDPVQIRNRCIIEVMYACGLRVSECAGLKISSINLVEGFLTVLGKESKER 182

Query: 234 TVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAG- 281
            V       +L+                  +  F+N + + ++A    +  +     A  
Sbjct: 183 MVPFYPRCKQLIQYYMNNARGTFMEKTQEHDILFVNQNGRPISARSIQLICEKAGEDANL 242

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            ++   H +R   AT   D GA    +    G + +   + YT    DR+R  +  + 
Sbjct: 243 PIHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAH 300


>gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
 gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD
 gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831]
          Length = 297

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 26/286 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR---SG 122
           L++ I ++         L+ N+  S++      ++   D D    + KI+   I      
Sbjct: 2   LEYAIEDFFHFLRIERGLSDNTLSSYKRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYM 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ +  + ++  + ++S+R   ++ +R++  + +P L +E PK+  +     +++++ + 
Sbjct: 62  LKDQGKSTATISRHISSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEVDRL 121

Query: 183 K---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227
                      + +   E L  +GLR S+     V  L   +  ++              
Sbjct: 122 LEIKMNTKLSVRNKAMLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKERIVPLG 181

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            T      +        L      ++  F+N   +++    F    K    +AG+    +
Sbjct: 182 DTAKHYLEKYISEARDSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGILKTIT 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + GA    +    G   +   + YT    + RL
Sbjct: 242 PHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVT-KARL 286


>gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
 gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1]
          Length = 297

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 24/282 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126
             L  ++  +     +LA N+  S+      +             +T   ++  +  R  
Sbjct: 4   SELTEQFLDALWIERNLAQNTLSSYRQDLQTLTGWLTHHQLTLLSVTPLDLQQFLAERLE 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +S+ + L++MR LF++  R++    +P   +  PK      +  ++  +++    
Sbjct: 64  GGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQA 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                    + +   E L  +GLR S+     +  +      ++          V L + 
Sbjct: 124 PDTNIPLELRDKAMLEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKERLVPLGEE 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            +  L         +          F +N  Q+M    F    K  AT AG++    S H
Sbjct: 184 AVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 285


>gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
 gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4]
          Length = 292

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 18/270 (6%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + +Y     H   L+  +R +++     ++  +G+   + +T  HIR  V +      
Sbjct: 3   DYLVQYLDHLSHERRLSPLTRENYQRDLRVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S  + L++ R  F++ +++   + NPC  +  PK         + +   Q  S   E
Sbjct: 63  GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            +   +     E    SGLR ++     +  L         T K      V +    M  
Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182

Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L      +    I +          ++++        +  A + G+N     H +R   A
Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +    +      +    G   +   + YT 
Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272


>gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRK 127
           L+ ++  +      L+ N+  S+ +   +++       +    I+   ++          
Sbjct: 14  LVEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQEYQSYLVDLD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  + +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDTGHLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 357

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 24/354 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPR 65
           P +  E  R+G   Y  R    + +R+     P +  F   Y +A  G           +
Sbjct: 6   PGLLIESHRNGSPRYRVRVEGRKHVRIHLPVGPEDKDFANYYYAARAGERWLPSER---K 62

Query: 66  KKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI 114
               ++ WL +EY     +    G ++  +     S   ++           GDFD    
Sbjct: 63  AVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMDAP 122

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRP 173
               I    ++    P +A   + ++R ++ WA  +EY+  NP   ++       G   P
Sbjct: 123 AAAFIE-IRDAWATHPGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGAVP 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           W+  ++++F+     G+   L      ++  R  D+   G          +         
Sbjct: 182 WSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPRKR 241

Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
                       +        G         K   +     +  +   + AG+  +S+HG
Sbjct: 242 GSAFVSIPMMPPLIAATRAADGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDRSSHG 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +RK    + A  G T +++MA         +E YTK   R  L     + ++++
Sbjct: 302 IRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355


>gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 296

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 95/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTVVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+        +  ++  ++          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYITKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   A+   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFASHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162]
          Length = 294

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 98/274 (35%), Gaps = 23/274 (8%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127
           + ++ ++        + + N+ +S+E    ++IR   + D     ++T   ++  +   K
Sbjct: 2   ERVVEDFILYLHETKNTSKNTEVSYERDLKKLIRYLQEQDLTSFSEVTCTDLQGYLNKIK 61

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
                 S+  + + S+R L+ + +++  VA +P   +  PK + +     + E++ +   
Sbjct: 62  SENLAASTISRNIASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEEVDRLLK 121

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G +     E L  +G+R S+        +   +  +    +     + + + 
Sbjct: 122 QPDIRTPKGIRDNAMMELLYATGMRVSELIHLSTTDINLQMGYVVCHDSDKERIIPIGNV 181

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               +         FF           N   + M+   F    K  A  AG+++  + H 
Sbjct: 182 SRNAILQYMEHSRGFFTKDTNESALFTNCSGKSMSRQGFWKVLKGYAADAGIHRDITPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +R   A      GA    +    G   +   + Y
Sbjct: 242 LRHSFAAHMLQNGADVKSVQEMLGHADISSTQIY 275


>gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 305

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 90/279 (32%), Gaps = 29/279 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK--------HTPSSAIQF 136
           + +++ +++    + +             +    + + V   +           ++  + 
Sbjct: 19  SAHTKDAYQRDITEFLDFLKSENIMSLDDVDRIIVMNYVSHLRERDGRQGTMKNATVARK 78

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192
           L+S+R  +++      V  NP L  + PK+          +++  F +      +   + 
Sbjct: 79  LSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFLASFDLHEAVDVRD 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
           R  FE +  SGLR S++    +  +  +        K      V   D   + L      
Sbjct: 139 RALFELMYASGLRVSEAVNLRLSDIDFHDNILHIIGKGDKQRLVPFYDLAKERLVDYIEH 198

Query: 252 KETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
               ++N  +            + +       +  A K  ++     H  R   AT   D
Sbjct: 199 VRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLHLHIHPHMFRHSFATHLLD 258

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            GA    +    G  ++   + Y     DR++   +++ 
Sbjct: 259 NGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAH 297


>gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNADLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287


>gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL]
 gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 97/278 (34%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           ++  +       +  + N+  S+     + I    +         + T       ++   
Sbjct: 3   IVEAFCDHLQRQNRFSQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +  + + +     + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFL-KTQKIIDIGKIEIEPPKLEKNPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G++ S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N + ++M    F    K  A  A ++K  + H +R 
Sbjct: 182 AVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
 gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135]
          Length = 303

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 109/293 (37%), Gaps = 24/293 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128
           K +I +YR+      SL+ N+  ++ +  D++          + ++T +++ +     + 
Sbjct: 7   KSIIIKYRQYLKLEKSLSANTVEAYLTDLDKLFAFLELESIHFTEVTLENLETFSAGLRD 66

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
               P S  + L+ +R  F++ + ++Y+  +P   +E P+         T E++ +    
Sbjct: 67  IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGS 126

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+ C   +  L     F     K      V +   
Sbjct: 127 IDRSTREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPR 186

Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L +              ++  FI+   + ++        K  A + G+ K+   H 
Sbjct: 187 AIHELELYFPDRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            R   AT   + GA    +    G +++   E YT   DR RL  +       
Sbjct: 247 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRLRQEILEHHPR 298


>gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
 gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91]
          Length = 305

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 101/281 (35%), Gaps = 26/281 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137
            L+ N+  S+ +   Q++      +        +T   + + +  R       S+A + L
Sbjct: 23  GLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASRAL 82

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193
             +R  +++ +RQ  + I+P ++++ PK          + +++            G + R
Sbjct: 83  ACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDR 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT---- 248
              E L  +GLR S+     +  ++ ++  ++   K      + L D  +  L +     
Sbjct: 143 AMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREA 202

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                        F+      M    F    K  A +AG+    S H +R   AT   + 
Sbjct: 203 RPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQLSPHTLRHAFATHLLNH 262

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 263 GADLRVVQLLLGHSDISTTQIYTHVA-RERLRQLHARHHPR 302


>gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
 gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345]
          Length = 300

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 98/292 (33%), Gaps = 28/292 (9%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
            +  T   +I  +         L+ N+  ++ +    + R       D    +   IR+ 
Sbjct: 2   SEKYTPNSIIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTCSQFDIRNY 61

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R       +S+ + ++S+R  + + + ++ +  +P   +E PK   +     ++ED+
Sbjct: 62  LAERFDKGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEEDI 121

Query: 180 QQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
            +     +      S+ +   E L  +GLR S+     ++ L      ++          
Sbjct: 122 DRLLAEPEQDDPIESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERL 181

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   T I   L     +LL               +       F    K  A +AG+
Sbjct: 182 VPLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQM--TRQTFWHRIKLYALRAGI 239

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               S H +R   AT   + GA    +    G   +   + YT  A   RL 
Sbjct: 240 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290


>gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 298

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +      LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
 gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6]
          Length = 362

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 101/319 (31%), Gaps = 38/319 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYR 112
           K          PT +   +++Y +       LA N+  ++     +  R     G     
Sbjct: 39  KAPEPVQAAAAPTKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPG 98

Query: 113 KITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            IT  H+   V +              SA + + ++R L K+   + + A +P   V  P
Sbjct: 99  DITRHHVTGFVRALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPP 158

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                  +  T +++ +        +    + R   EFL  +G R S++    V  +   
Sbjct: 159 MAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLA 218

Query: 221 IFSIKTQKTGTIITVELPDGF-------------------MKLLAMTPIGKETFFINNDK 261
               +       +  +                          LLA    G    F+N   
Sbjct: 219 GDDTEQGPAIVRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARG 278

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +++        K  A KA +  + S H +R   AT   + GA    +    G  +V   
Sbjct: 279 GRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 338

Query: 320 ETYT-KGADRIRLGIKNSR 337
           + YT   AD +R     + 
Sbjct: 339 QVYTLVTADTLREVYAAAH 357


>gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
 gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61]
 gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3]
 gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52]
          Length = 298

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137
            +LA N+ +S+E    + +R     +         ++   H    +  +  +  +  + L
Sbjct: 16  RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++  A +P + +E P+ +    +  + E+++   +        G + +
Sbjct: 76  ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+  +  +  +   +  ++          V +    ++ LA      
Sbjct: 136 AMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195

Query: 253 ETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          F+N+  Q++    F    K  A +AG+ K  + H +R   AT   
Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTHVTKTR 286


>gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A]
          Length = 291

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 99/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +         + T       ++   
Sbjct: 3   IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+ ++ + S++V + +  + + +     + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIVRAIVSLKVFYDFL-KTQNIVDIGKIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 304

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 23/283 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121
            ++  T+  ++  Y +      +L+ N+  ++ +    ++            +  + + +
Sbjct: 2   ERENKTVDNMVKAYMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHGLKVEAVKLEDLDN 61

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              S    + TP S  + L+ +R  FK+ +   ++  +P   +  P  +       +  +
Sbjct: 62  FSASLHDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
           + + ++       EG + R   E L   GLR S+     + +L      ++         
Sbjct: 122 VDRLEASIDLSKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN 283
            V +    +  L      +    I          N     +  T   I  K +A  AG+ 
Sbjct: 182 LVPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGIT 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K+   H +R   AT   + GA    + A  G + +   E YT 
Sbjct: 242 KTISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284


>gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
 gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47]
          Length = 291

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 97/278 (34%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRK 127
           +I  +       +  + N+  S+     + I    +         + T       ++   
Sbjct: 3   IIEAFCDHLQKQNRFSQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQKSG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + + S++V + +  + + +     + +E PK +    +  T++++++  S   
Sbjct: 63  KSNSTIARAIVSLKVFYDFL-KTQKIIDIGKIEIEPPKLEKNPPQILTRDEVEKLLSCPK 121

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +G+R S+     +  +      I  +       + +    + 
Sbjct: 122 EEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N + ++M    F    K  A  AG++K  + H +R 
Sbjct: 182 AVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A    + GA    +    G   +   + Y + A+  
Sbjct: 242 SFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
 gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7]
          Length = 292

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 98/281 (34%), Gaps = 20/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129
             +  +Y ++    +++ N+  ++     +      + +    +I    I + V+  +  
Sbjct: 2   DKVFLKYIENLEKKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVVSIMAYVQQLQKE 61

Query: 130 PSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +    +    S+R  +K+   + ++  NP ++ E PK K    +  T E++    S  
Sbjct: 62  GRATSSIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLSTP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL 237
             G+    + +   E L  +G++ ++     +  +            K Q+    I    
Sbjct: 122 DLGTNKGIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERIIPIGSIA 181

Query: 238 PDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRK 291
                + L +            FIN    +M    F    K  A  AGV+K  +   +R 
Sbjct: 182 IQCLQEYLKIRSQINIYNLDLLFINLRGIQMTRQGFWKIVKYYAKAAGVDKHINAFTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A      GA    +    G K +   + Y+  + + ++ 
Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIA 282


>gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 379

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/376 (12%), Positives = 114/376 (30%), Gaps = 46/376 (12%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     Y F  G   G+R R       T   A  +                +   T  
Sbjct: 6   RKRGNTWYYSFDLGKVDGKRKRKEKGGFKTKTEAQKALREAINDYENCGTIVNETNITFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
             +  + K     +   N++  +     + +    G +  + ++   ++  +  +  +  
Sbjct: 66  DYLDYWFKEYVTINCKFNTQKYYLGIIQNHLKPILGSYKLKSLSPNVLQEFLNKKYISGL 125

Query: 131 --SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQF 182
             SS   F   +    K      +++  NP   V+ PK        E I+  T ++ +  
Sbjct: 126 SKSSLSNFYGVLSGSLKMAVYPYKFIKENPMQYVKIPKNSNTKVTQEKIKVLTLDEFKII 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
            + +  GS   +  +    +GLR  + C     ++  +  ++  + T             
Sbjct: 186 LNRFPFGSNFYIPLQIAFNTGLRGGEVCALTWDNIDFDNKTLTVEHTLIEKGNGIFELGT 245

Query: 233 -------ITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSI 271
                   T+ L D  + +L      +                     + Q +  +    
Sbjct: 246 PKTKSSFRTIALGDTLINILKKHRTFQKENKLKYGEYYSNSNYICTKENGQLITTSSLKY 305

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             +    +  ++ + H +R   AT+  + GA   ++    G   +     TY+   +  +
Sbjct: 306 LSRVVNYELLIDFNFHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTN--K 363

Query: 331 LGIKNSRRISSVVDSD 346
           +       +  ++  +
Sbjct: 364 ITTDTVNILEKIIADN 379


>gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 393

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 118/373 (31%), Gaps = 56/373 (15%)

Query: 9   PFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             V K   R     YYF   K  G+  ++     +T   A  S            +  + 
Sbjct: 3   GGVYK---RGSSWYYYFNVCKEEGKYKKVCRKGGATKKEAETSLRKALNEYESTGSIKKD 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              ++   +  + +     +L   +   ++    + II + G++  + ++   ++  + S
Sbjct: 60  TNISVSDYLKYWLEENVKTNLKYRTYTCYKRVIENHIIPQFGNYKLKNLSALELQEFLNS 119

Query: 126 RKHTPSSAI---QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE----GIRPWTKE 177
           +K    +      F   +    K       ++  NP L V  PK  T+     I   T +
Sbjct: 120 KKKNGYTKNTLGNFYGVLSGSLKMAVHPYGFIKENPMLYVSMPKFNTKQSDEKISVLTID 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNI 221
           ++ Q    +  GS   +  +   ++GLR S+ C     ++                 +  
Sbjct: 180 EVNQILDRFPFGSSFYINVQIAFHTGLRASEVCSLTWDNIAFENKTLTVEKNLLKQGHEW 239

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------------ 263
                +   +  T+ + D  + +L    + ++   +   K                    
Sbjct: 240 CFDTPKTKSSNRTIRIGDTLINILKKHNLWQKENQLRYGKYYAKNTYDFHGKTYTTDLIS 299

Query: 264 -------MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                  +++       +      G+  + H +R   AT+  + GA   ++    G   +
Sbjct: 300 TKENGELVSSDSLKYLSRVVNYDLGIKFNFHALRHTHATMLLEGGANIKDIQKRLGHSKL 359

Query: 317 DQAE-TYTKGADR 328
                TY+   ++
Sbjct: 360 ATTMDTYSHVTEK 372


>gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15]
          Length = 300

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 24/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            L   +R ++ S   ++        G    R +    + + +    ++    S+A + L+
Sbjct: 21  GLGEKTRQAYRSDLLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSSTAARRLS 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
            +R  +++ +R+  +  +P L ++ P+         T+ ++    S    G     + + 
Sbjct: 81  GLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLSEPDPGIAIELRDKA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG-- 251
             E L   GLR S+     V  +      ++          V L +  +  L        
Sbjct: 141 MLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEAVDWLLQYMKEGR 200

Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                    +  F  N    M    F    K  A + G+ K  S H +R   AT   + G
Sbjct: 201 PELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTLRHAFATHLLNHG 260

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 261 ADLRVVQMLLGHSDLSTTQIYTHVARQR 288


>gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 313

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 26/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124
           L   I  + +      + +  +  S+    + ++    +         +I    +R  V 
Sbjct: 12  LHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVA 71

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 +  ++  + L  +R  F++  R+ Y   NP   +  P+   +     T + +  
Sbjct: 72  YLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGT 131

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                      G + R   E L  +GLR S+     V     +   I+   K        
Sbjct: 132 LLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAP 191

Query: 237 LPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +     K L                 +  F+N  K ++ +       +    + G++K  
Sbjct: 192 IGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKKT 251

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G K++   + YT  + +  L
Sbjct: 252 SPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLL 298


>gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
 gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN]
          Length = 318

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 24/271 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVE---SRKHTP 130
             Y K       + N+  ++    +++++   +      +   ++I +            
Sbjct: 26  QRYLKLEKA--YSANTLDAYMRDVEKLLKYLANEKINPEEAKLENIENFAAAVGDLGIGA 83

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + L+ +R  F++ V + Y+  +P   +E PK+        + E++   ++      
Sbjct: 84  RSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDLSK 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
            EG + +   E L   GLR S+     + +L  +   ++          V +    +K L
Sbjct: 144 WEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISPRALKEL 203

Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
               I +    I          N     +  T   I  K  A +AG+ K+   H +R   
Sbjct: 204 NFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPHTLRHSF 263

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   + GA    + A  G +++   E YT 
Sbjct: 264 ATALLEGGADLRAIQAMLGHESIGTTEIYTH 294


>gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49]
 gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49]
          Length = 299

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 102/294 (34%), Gaps = 29/294 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125
           TLK +  +Y +      L+ N+  ++     ++ +   + +       I+ K I+  +  
Sbjct: 6   TLK-MYKDYLRIE--RGLSDNTIANYALDILKLTKWLEENEMAISPIDISEKTIQEFIYE 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180
              T  PSS  + ++ ++  F + V +EY   NP   +E PK   +     +++++    
Sbjct: 63  IAKTVAPSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLI 122

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
            +      +G + R   E L   GLR S+     +  L     F   T K      V + 
Sbjct: 123 SEIDLSSPQGERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIG 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285
           D  +K + +             +                       K    K G+ K  S
Sbjct: 183 DNTIKFINIYRNEIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   AT   + GA    +    G +++   E YT   D+  L  +   + 
Sbjct: 243 PHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTH-IDKSHL-TEVIHKF 294


>gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 310

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 104/275 (37%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG------V 123
           + E+          + N+  ++++   Q        D    +  +T+  I+         
Sbjct: 8   VEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDYLLYLKGN 67

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + R + PS+  + + +++  F++ V +  V  NP   +  P+ +    +  + +++    
Sbjct: 68  QDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNMLL 127

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +        EG + R   E L  +GLR S+     V  +  +   +K    G    V L 
Sbjct: 128 AAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVPLS 187

Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
              + +L +              ++  F+N+  Q++    F +  KA A++AG+   + H
Sbjct: 188 QPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGITPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A    D G    ++    G  ++   + Y
Sbjct: 248 TLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282


>gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 103/281 (36%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ ++++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARL 287


>gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 318

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+      +       G        I  +   +      
Sbjct: 27  LIEQFLDTIWLEKDLAENTLSSYRLDLQALNNWLVYSGHDLLSVESIELQLFLAERVDSG 86

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183
           +  SS+ + L++MR LF++  R++    +P   +  PK      +  +++ +        
Sbjct: 87  YKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSAPKLPKRLPKDLSEKQVGDLLNTPL 146

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           +      + +   E L   GLR S+     +  +      ++          V L +  +
Sbjct: 147 TDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSLRQGVVRVVGKGNKERLVPLGEEAL 206

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L         +          F +    +M    F    K  A  +G++    S H +
Sbjct: 207 YWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQTFWHRIKHYAVLSGIDTERLSPHVL 266

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 267 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATER 306


>gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
 gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032]
          Length = 303

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 36/303 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
            L+  + +        + ++   ++    +  R  G       IT+  +++ V S   + 
Sbjct: 3   DLVERFVRWLLVEKGYSPHTADGYQRDLLEFQRFCGGVLSPESITSSLVQAFVGSLYASN 62

Query: 131 SSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +SA   + L+++R  F++ +R++ +  +P   +  PK         T +++       + 
Sbjct: 63  ASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLLETPAT 122

Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
             +     R   E L  +G+R ++      + +      ++ +        V       +
Sbjct: 123 SDRYWRRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKERLVPFGRAAHE 182

Query: 244 LLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV--NKS 285
            L      +E   I   ++                +++A       +  A +AG+    +
Sbjct: 183 ALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYALRAGIGVTVT 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G  ++   + YT           N   +S V D 
Sbjct: 243 PHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHI---------NIDHLSKVYDQ 293

Query: 346 DDP 348
             P
Sbjct: 294 AHP 296


>gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius
           UCC118]
 gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           UCC118]
 gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius
           CECT 5713]
          Length = 298

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 89/278 (32%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            I E++K        +  +  ++       +       G   +++I +  + + +     
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + ++S+R  + + ++ E    NP   V+  +      R + +++M       
Sbjct: 65  RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
              +    + R   E L  +G+R S+     ++++      +    K      V      
Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKGDKDRLVPFGSYC 184

Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            + L                   +  F+N+    +     +   K    ++ ++     H
Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT     GA    +    G  ++   + YT  
Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282


>gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
 gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127
           LI ++         L+ N+  S+ +   ++                +      +    + 
Sbjct: 7   LIEQFLDMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLLLHAYLAWRIDQG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
              +S  + L+++R  +++ +R++  A +P ++++ PK      +  ++E ++       
Sbjct: 67  FKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQVEALLAEPD 126

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  L +N+  ++          V   +   
Sbjct: 127 VQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDRLVPTGEEAQ 186

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +                    F +N  Q+M    F    K  A +A +  + S H +R
Sbjct: 187 YWIQRFMREGRMTLLHEQASDVLFPSNRSQQMTRQTFWHRIKLYAVRANITSDLSPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 247 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QARL 286


>gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 106/328 (32%), Gaps = 19/328 (5%)

Query: 18  HGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-----KPT 69
            G++ Y  RK   G    + +    + +   A   A       +       K     K  
Sbjct: 50  SGRMSYIVRKNINGKSHYVPIGCGTQFSINEAREKASEIIYSLKRKGKIHGKDYAAIKNM 109

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T   LI +Y        +  ++        + +  + G     +IT   I   +   +  
Sbjct: 110 TFGQLIDKYEVDVLSTGVKKSANTDRSKIKNYLYPQLGALKVAQITEGDILRYLAGLELK 169

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFK 183
           P++  + L  ++ LF +AVR  +V+ +P   ++     T   +        +  +     
Sbjct: 170 PATRNRHLALIKALFTYAVRMNFVSCSPARYIKALPETTSQRKAMADAQSKSWMEAAIQM 229

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241
                 +       FL  +GLR  ++    ++ +  +  +I  +  K G +  V + D  
Sbjct: 230 RNGEPDNAALALLVFLALTGLRLGETRYLLLEDIDWSRQTITLRETKNGKLRCVPVGDKA 289

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             LL                              K    KAG+   + H +R   AT   
Sbjct: 290 FVLLTEQRQHLGDKGWVFPGYNTTNPVAEPRRLQKRICEKAGISPFTIHEMRHTFATKLI 349

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           ++GA  H +    G  T+   E Y  G+
Sbjct: 350 ESGADIHTIKDLLGHSTIKVTERYLHGS 377


>gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
 gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp.
           JE062]
          Length = 426

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 117/338 (34%), Gaps = 16/338 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            +HGK+  Y RK       +          A+++     T      ++ R  P TL  LI
Sbjct: 14  DQHGKLRCYHRKTGEP---INLEKAPIGSAAFLAECERLTNLMSVADTSR--PGTLGNLI 68

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            +YR S+ +  LA  ++  ++  FD +     +    + T+  I    +    +     A
Sbjct: 69  DKYRASSAFLELADRTKSDYQKVFDYLAP-IHNTPLTRFTSPFIVKLRDKAEEQRKRRFA 127

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 + VLF W   + +V  NP L V+  ++              +            
Sbjct: 128 NYVKQVLSVLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDERGIVLKHAPPQM 187

Query: 194 L-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           + A   ++Y+GL   D+     Q  QN   S +  KTG  +   +       L   P   
Sbjct: 188 VPALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVIAPLKAALDDAPDHG 247

Query: 253 ETF-FINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAH 305
                 N+  Q    + F   ++    +           + +G+R   ATI  + G    
Sbjct: 248 APTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRHTVATILREIGLNDR 307

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +L A  G +T   A  Y KGAD  +     + R    +
Sbjct: 308 DLAAALGHETEAMARLYAKGADLRKSMSDIAVRFEKEI 345


>gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
 gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434]
          Length = 316

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 33/281 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---- 129
           Y         L+ N+  ++E    +  R     G  D   +T   + + +E+ +      
Sbjct: 18  YLAHLRVERGLSPNTLAAYERDLTRYCRFLLARGVQDLAAVTEADVAAFLEAIRTGDDGG 77

Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SSA + +T++R   K+ + +    ++P  +V  P+      +  + E++Q     
Sbjct: 78  RALAASSASRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKALSVEEVQALLEA 137

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
            S        + R   E L  +G R S++    +  L      I+   K      V +  
Sbjct: 138 ASTDDSPRSLRDRALLELLYATGARISEAVGLVIDDLDRESGCIRLFGKGRKERIVPVGQ 197

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV----NK 284
                L    +                F+N   + ++        +  + +AG+    + 
Sbjct: 198 YAWDALDAYLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGVLRQASARAGLGADKHV 257

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           S H +R   AT     GA    +    G  +V   + YTK 
Sbjct: 258 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 298


>gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
 gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108]
          Length = 317

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 105/298 (35%), Gaps = 25/298 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH-- 128
           +I +Y +      SL+ N+  ++++  ++++R   D       +T   ++          
Sbjct: 16  IIRKYNQYLRLEKSLSPNTLDAYQTDLEKLLRFLEDEKIDILAVTLDDLQRFTAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F + V   Y+  +P   +E PK   +     T E++ +      
Sbjct: 76  IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              +EG + R   E L   GLR S+ C   +  L  N  F     K      V +    +
Sbjct: 136 MNTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPISHRAI 195

Query: 243 KLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
             +      ++  +                  ++      + K  A KAG+ KS   H  
Sbjct: 196 TEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           R   AT   + GA    +    G +++   E YT   DR  L  +        +   +
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYRE 312


>gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 304

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 99/297 (33%), Gaps = 31/297 (10%)

Query: 72  KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L++ + +     +  +V++R +++    + I      G  + +      + + + S +
Sbjct: 2   EELLARFLQYMDSLNSGSVHTRDAYQRDIREFISFLQAEGVEELQDADRILVMNYIASLR 61

Query: 128 --------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      S+  + L+S+R  +++      +A NP L  + PKR          ++M
Sbjct: 62  EKSGVSGEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEM 121

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             F S +     +G + R  FE +   GLR S++    ++ +      +     G    +
Sbjct: 122 DTFLSSFALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQRI 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKAT--KAG 281
                    L    + +         Q+                      +  A   K  
Sbjct: 182 VPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCKLQ 241

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           V+   H  R   AT   D GA    +    G  ++   + Y     +R++    ++ 
Sbjct: 242 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAH 298


>gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  136 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          +   D      + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRESYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+  R  +++ +R++ + ++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens
           Pf-5]
 gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           LI  +  +      L+ N+R ++ S          +                 +    + 
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLELPRAGRELILDHLAWRVEQA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           + P S  +FL+ +R  +++ +R++ + I+P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEALLAAPD 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                G + R   E L   GLR ++     ++ +      ++    G+            
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + VE      +   +     +  F +   ++M    F    K +A  AG+ K  S H +R
Sbjct: 188 VWVERYMRDARAELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAKHHPR 297


>gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
 gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4]
          Length = 300

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 97/281 (34%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRK 127
           LI  +         L+ N+  ++ +      R       R I       +   +    ++
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVVQADVRAYLAYRVEQQ 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  + + ++ + +A +P   +E PK   +     ++  + +  +  +
Sbjct: 70  FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----P 238
                  + +   E L  +GLR S+     ++ +      ++    G     V +     
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLVPMGELAI 189

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN--KSAHGVR 290
               + L+           ++          M    F    K  A++AG+    S H +R
Sbjct: 190 TEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A R RL
Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 397

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 106/338 (31%), Gaps = 16/338 (4%)

Query: 21  IIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKW 73
            +  +R   GR+  +     S  T   A   A T  T  +           ++K      
Sbjct: 47  YVIRYRNEEGRQKVMTLFRASNITADEARRKARTKLTEAQGGTDILKEKQEKRKAMLFSE 106

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-KHTPS 131
               Y +     + +  +  + ESY ++ I+   G+   + IT +          K TP 
Sbjct: 107 FAEIYLEHHARPNNSAGTVKTNESYLERLILPAFGNRPLKSITPEDTAKLHHKIGKSTPV 166

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            A +    +R +F  A    Y+             +    +       TK      + + 
Sbjct: 167 QANRVHALLRKMFTLAETWRYIPQNTNPCVHTQKYKETPVQRFLTPDETKRLEDVLEKYE 226

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +     LA   L+Y+G R  +      ++++N +  +   K+ T          +  + 
Sbjct: 227 EKYYSAVLALRLLMYTGCRKEEILTLKWENIKNELNLLHIPKSKTGEKNVPVSHEVLDML 286

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                   +      +          ++    +AG+ +   H +R   A+ +   G    
Sbjct: 287 ENAYKVNEYVCFGKFENSRLIGLQKIWERLRKEAGLEDVRIHDLRHSFASTAISGGINIE 346

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +    G K +   E Y        L  + + +I++ +
Sbjct: 347 FISKLLGHKRITTTEYYYAHVQNDPL-HEAANKIATSI 383


>gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 298

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESR---K 127
           +I  +  +      L+ N+  S+ +   +++    +       I+   ++   +      
Sbjct: 7   VIERFLDAMWMERGLSENTLASYRNDLTKLMMWMKEHKLVLESISADDLQRYQQWLFDQD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + ++++R +F++  R++    +P   +  PK      +  ++  +       +
Sbjct: 67  YKQTSRARMVSAIRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQVDALLDAPN 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +  +
Sbjct: 127 VDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKERLVPMGENAV 186

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   Q+M    F    K  A  AG++    S H +
Sbjct: 187 DWIEQFLAQGRPMLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
 gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588]
          Length = 316

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 31/287 (10%)

Query: 75  ISEYRKSAHW-----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR---SG 122
              Y K          SL+ NS  ++    +++++            +++   ++     
Sbjct: 20  WDAYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRW 79

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +   T +S  + ++ ++  +++   ++ V  +P + +E PK K +     + E+++Q 
Sbjct: 80  IATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQI 139

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                 G+    + R   E +   GLR S+     +  L  +   I+          V +
Sbjct: 140 IGQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPI 199

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK-- 284
               +K + +              Q+                  +  K     AG++K  
Sbjct: 200 GSDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQV 259

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H  R   AT   + GA    +    G +++   E YT   DR  L
Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTH-LDREYL 305


>gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 321

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 29/283 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESR 126
              +Y +S     LA N+ +++     +             T         ++    E +
Sbjct: 12  AFRDYIQSE--RGLAENTLLAYGRDLARYAHWVEQVQLPDYTHPTLKHLAAYVAFLHEEQ 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  + L ++++ +++   +E  +      +  P       +      ++   +  
Sbjct: 70  LAAP-SIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWERVPQVLPPPAVETLITAP 128

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
             G     + R   E L  +G R S+     +  +  +    K          V L    
Sbjct: 129 QPGDRFHLRDRAMLEVLYATGCRASEVVNLKLNDVYLDSGFCKCVGKGSKQRVVPLNRHA 188

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
           +  L                G E  F +   + +         K    +AG+ K+   H 
Sbjct: 189 VTALRAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRIHLWALVKKYCKRAGLPKTVSPHT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT     GA    +    G  ++   + YT   DR RL
Sbjct: 249 LRHSFATHLLSGGADLRTVQELLGHASIATTQIYTH-VDRDRL 290


>gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17]
 gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17]
          Length = 304

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 25/290 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127
           +   Y +      + + N+  ++      ++    +     +  +        + +  + 
Sbjct: 11  IAKAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +  S  + L+ +R  +++     Y+  +P   +  P+         + E++   +    
Sbjct: 71  VSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSID 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               EG + +   E L   GLR S+        L      ++    G             
Sbjct: 131 LSKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSAL 190

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +EL      L+ + P  ++  F+N     +  T   I  K +A  AG+ K+   H +R
Sbjct: 191 RQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
              AT     GA    + A  G +++   E YT    +D  R  +++  R
Sbjct: 251 HSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 300


>gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
 gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2052A-d]
 gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2062A-h1]
 gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G]
          Length = 307

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K+  S+  + ++++R  +++  ++  + +NP   +               ++M +  
Sbjct: 65  AQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKNLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     +  +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++   + +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
 gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1]
          Length = 326

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 87/278 (31%), Gaps = 31/278 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
            + ++  Y       + + N+  ++ S    +I       G +D RK      +   + +
Sbjct: 39  FEEMLENYIIEMEIRNYSENTVKTYSSIIRSMIDYMSSEEGVYDGRKFLACFKKYIRDLK 98

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K    S           +   ++        I     V+ PKR     +  T+++++   
Sbjct: 99  KDQDVSQNYIYLNTVVCKKFLEFND------IYFLEDVQNPKRTKSLPKSLTEKEVKSLI 152

Query: 184 SFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
                             + ++  EFL  +GLR S+  +   + +  +  +I+ +     
Sbjct: 153 DAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKKDIDFDERTIRVRGKGEK 212

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--S 285
              V   +    L+      +          K           +  K  A KAG+ K  +
Sbjct: 213 DRIVLFDENTRDLIDNYIETQNQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVT 272

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT     G     +    G  ++   + YT
Sbjct: 273 PHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYT 310


>gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
 gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC
           11741]
          Length = 298

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            I E++K        +  +  ++       +       G   +++I +  + + +     
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + ++S+R  + + ++ E    NP   V+  +      R + +++M       
Sbjct: 65  RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
              +    + R   E L  +G+R S+     ++ +      +    K      V      
Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMESVDLTNKKMLLHGKGDKDRLVPFGSYC 184

Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            + L                   +  F+N+    +     +   K    ++ ++     H
Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT     GA    +    G  ++   + YT  
Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282


>gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR---K 127
           LI  +  +      L+ N+R S+ S          + +        + I   +  R    
Sbjct: 8   LIDRFLDALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPVAGREVILDHLAWRVENA 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           + P S  +FL+  R  +++ +R++ +A++P L ++ P+      +  ++ D++   +   
Sbjct: 68  YKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAPD 127

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                G + R   E L   GLR ++     ++ +      ++          V + +  +
Sbjct: 128 LSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +     G              F +    +M    F    K +AT AG+ KS   H +R
Sbjct: 188 VWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              AT   + GA    +    G   +   + YT  A R RL   +++    
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAKHHPR 297


>gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str.
           Iowa]
 gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii
           str. Iowa]
          Length = 306

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             I+++ +      +L+ NS +S++                +  ITT++IR  +E     
Sbjct: 2   EFIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + + A NP L+V+ PK + +     +   ++      
Sbjct: 62  DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  +        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
 gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942]
          Length = 296

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +        + ++T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQVTSWNEVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +  + ++++            G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  +G+R S+        +  ++  ++          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKERIVPIGETAAHAIEEYLAKA 195

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                     +  F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
 gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799]
          Length = 295

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 93/283 (32%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
           + +I  +         L+ N+  ++ S   +      + D        +  +   +  +S
Sbjct: 4   EQIIERFCDDLWAQRGLSDNTLAAYRSDLCRFAEFLSERDTPLARADSLDIRDYLAHRKS 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L+++R  F   VR+     +P   + +PK   +     ++ +++     
Sbjct: 64  IGAAKTSTARSLSALRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALLDA 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
                    + +   E L  +GLR S+     ++ +           K G    V + + 
Sbjct: 124 PECDDPIQLRDKAMLELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKERLVPMGEQ 183

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               L +                  F +    +M    F    K  A ++G+    S H 
Sbjct: 184 AQHQLEVYLREARGMLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGITKPLSPHT 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 244 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-QARL 285


>gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 298

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 26/278 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            I E++K        +  +  ++       +       G   +++I +  + + +     
Sbjct: 5   WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYD 64

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + ++S+R  + + ++ E    NP   V+  +      R + +++M       
Sbjct: 65  RYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEAT 124

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
              +    + R   E L  +G+R S+     + ++      +    K      V      
Sbjct: 125 EGDTQMLIRDRALLESLYGTGMRVSECTGLKMGNVDLTNKKMLLHGKGDKDRLVPFGSYC 184

Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            + L                   +  F+N+    +     +   K    ++ ++     H
Sbjct: 185 QEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT     GA    +    G  ++   + YT  
Sbjct: 245 ELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHV 282


>gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 312

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 95/294 (32%), Gaps = 32/294 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           LI  +     H   L+  +  S+ +        + K G  D    T + IR  V      
Sbjct: 16  LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLG-TDLVSATREDIRHCVAEYTLA 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           +  PSS  + L+S+R  +++  R+     +P   +   K          ++++ +     
Sbjct: 75  RQAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIE 134

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + R   E L  +G R  +     +  +Q +      +  G     + L  G  
Sbjct: 135 GSDFASLRDRALLEVLYSTGCRVQELVSLTISGVQVSRGWCVVKGKGGKERLLFLGLGAR 194

Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           K L             M    +   F+N     +     +   + +A + G+ K  S H 
Sbjct: 195 KALAAYLPLRQALLERMGRREEGALFVNQKGSPLTTRGVAYIIERRAREKGLEKRISPHV 254

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            R   AT     GA    +    G  ++   + YT       L +   +R+   
Sbjct: 255 FRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRMYRK 302


>gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
 gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               ++       + +      L+ N+  ++                  + T        
Sbjct: 18  ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +K   +SA + L+  R  + WAVR+    I+P + +   K+        T+  ++
Sbjct: 74  YSAARQKDKSTSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVE 133

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                    +    + R   E +  SGLR ++        +  N   ++          +
Sbjct: 134 ALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+ +  + M   QF    K  A  AGV   
Sbjct: 194 PFGEEAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAP 253

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035]
 gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035]
          Length = 346

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 21/339 (6%)

Query: 13  KERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +++   G +  YY+    G R+    P +  F+ AY +A+     ++E          TL
Sbjct: 12  RKKLSDGSVRVYYYAWKGGPRLP-GKPGDPEFVDAYHTAVQTRRSQQE---------GTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR 126
           + +++ Y++S  +  LA  ++  +  +  +I  +  DF    +       + +       
Sbjct: 62  QAILNAYQESQRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMA 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K +   A    + + ++  WA  +  V  NPC    +  R       WT ED   F    
Sbjct: 122 KTSRRQADYTYSVLALIIAWAYDRGLVPSNPCERPGKVYRSERIDSVWTSEDEAAFLKV- 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              S   LAF   L++G R  D  R            ++ +KTG  + + +      +L 
Sbjct: 181 -APSHIGLAFMLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLD 239

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
            T     T    + K     + F   +     +AGV + + H +R  + T  A AG +  
Sbjct: 240 QTSRSAVTILATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVP 299

Query: 306 ELMATYGWKTVDQAETY-TKGADR-IRLGIKNSRRISSV 342
           E+ A  G                R  +LGI   +++   
Sbjct: 300 EIAAITGHSLKQVTAILDAHYLSRDSKLGISAIQKLEEH 338


>gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 309

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 94/281 (33%), Gaps = 26/281 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHI---RSGVES 125
              +Y        L+  +  S+    +       +          +  + I    + + S
Sbjct: 19  AWLDYL--LAQRGLSPRTVESYGQDLESFFLFEEELAQSGGSASCLDEQEIFLYLAWLRS 76

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           R +T  +  + L+++R  F +AV +  +  NP L +E PK         ++E+M++    
Sbjct: 77  RGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREEMEKLLVL 136

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                  G + R   E L  +GLR S+ C   V  L      ++    G     V L D 
Sbjct: 137 PDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKERLVPLHDM 196

Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVR 290
              LL          F     Q          +        K     AG+ +  S H  R
Sbjct: 197 IQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYIWKMVKKYTLLAGIRRAVSPHTFR 256

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
              AT   + GA    +    G   +   E YT   A+R+R
Sbjct: 257 HSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 297


>gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
 gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4]
 gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284]
          Length = 301

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 89/285 (31%), Gaps = 28/285 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD----YRKITTKHIRSGVE 124
             I ++++        +  +  ++     +  +     G+        +       S + 
Sbjct: 2   DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKPELLAVDRFDANVFMSYLF 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    +S  + ++S+R  +++ ++ + +A NP   V+  K      R + +++M Q   
Sbjct: 62  DQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMNQLFD 121

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT---- 234
              +       +     E L  +G+R S+        +  ++ +I    K          
Sbjct: 122 TVYQDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGNKERYVPFG 181

Query: 235 --------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                       + +  LL       +  F+N+  Q +               + +    
Sbjct: 182 RYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIKNSSLNGKI 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R   AT   + GA    +    G  ++   + YT      
Sbjct: 242 HPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEK 286


>gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
 gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6]
          Length = 336

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
             L S +         L+ N+  ++    D +     +       +  ++I   +   + 
Sbjct: 28  ARLASRWLDGLIAERGLSRNTVAAYRQDLDALQDFLDELETPLSGLDDENITLFIAWLRK 87

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +  + ++S+R    W V +  +A NP   ++ PK  +      T++++ +  + 
Sbjct: 88  RGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKLPSLLPDVLTQDEIVRLLNA 147

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVE 236
                  G + R   E L  +G+R S+        L      ++    G+      +   
Sbjct: 148 PDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRGVVRIFGKGSKERLVPLHDA 207

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVR 290
                 + L +               +     +        K  A +AG+ K  S H  R
Sbjct: 208 AVMRMAEYLKIVRPLFTPVEDRVFLNRSGNGLSRQGVWKLVKRYALEAGIRKPISPHTFR 267

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   E YT       L
Sbjct: 268 HSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLL 308


>gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
 gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574]
          Length = 313

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 25/290 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127
           +   Y +      + + N+  ++      ++    +     +  +        + +  + 
Sbjct: 20  IAKAYLRYLKLERNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKN 79

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +  S  + L+ +R  +++     Y+  +P   +  P+         + E++   +    
Sbjct: 80  VSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSID 139

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               EG + +   E L   GLR S+        L      ++    G             
Sbjct: 140 LSKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSAL 199

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
             +EL      L+ + P  ++  F+N     +  T   I  K +A  AG+ K+   H +R
Sbjct: 200 RQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
              AT     GA    + A  G +++   E YT    +D  R  +++  R
Sbjct: 260 HSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 309


>gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 302

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 85/281 (30%), Gaps = 27/281 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGV 123
           K  + ++++        +  +  S+    ++  R   +        D   I      S +
Sbjct: 6   KEWLEQFKQYLKVERQYSEATITSYFEDLNEFCRFLDESGGLKSFKDINNIDVHAYMSWL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R+   ++  + ++S+R  +++ VR +    +P   V   +        + + +M    
Sbjct: 66  YDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREMNALF 125

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      +     E L  +G+R S+     +Q +   + SI    K      V+  
Sbjct: 126 QAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKGKKDRYVQFG 185

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVNKS- 285
                 L        T  +   ++K                  S        K+ +  + 
Sbjct: 186 SYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIVEKSSLTTTI 245

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R   AT     GA    +    G  ++   + YT  
Sbjct: 246 HPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHV 286


>gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 297

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 19/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            + + N+  ++E                   ++  K     +  +  +  +A + + ++R
Sbjct: 16  RNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVDLKQFLVDILRKNRSRRTAARKMVALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFE 197
             +++  R  ++  NP LS+E PK         T +++ +     ++    G + R   E
Sbjct: 76  SFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRALLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL--------AMT 248
               +GLR  +     +  L      ++    G     V L    +  L           
Sbjct: 136 LFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALDSLKLYLEAGRPAF 195

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
               E  F+N     +              KAG+N+  + H  R   AT   + GA    
Sbjct: 196 KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRA 255

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           +    G K +   E YT    + RL
Sbjct: 256 VQELLGHKRLSTTEIYTH-LSKERL 279


>gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis]
          Length = 296

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 95/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +       D+  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+        +  ++  I+          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLED 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 299

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 26/292 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE- 124
            +  I+ Y+        L+ N+  ++     ++ R     +      +IT + ++  +  
Sbjct: 3   WETAITNYKNYLRIERGLSDNTIDNYARDLKKLTRYLEQLENSINPLQITREDLQEFIYT 62

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +++    S  + ++ ++  F + V ++Y   NP   +E PK   +     ++E++    
Sbjct: 63  IAKEVQARSQARVISGLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALI 122

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                G     + R   E L   GLR ++     +  L     F     K      V + 
Sbjct: 123 DAIDLGKPQGERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVVGKGDKQRFVPIS 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK--S 285
           +   K + +             +            ++         K  A KA + K  S
Sbjct: 183 EHTQKYINIYRNELRNHIDVKPEHVDILFLNRRGRQLTRAMIFTIIKDLAIKADIKKNIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            H  R   AT     GA    +    G +++   E Y    DR  L  + ++
Sbjct: 243 PHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMH-VDRNDLAREMAK 293


>gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
 gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541]
          Length = 300

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127
           LI ++  +      LA N+  S+ +    +      ++    + + I  +   +      
Sbjct: 9   LIEQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSIDLQSFLAERIDSG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S+ + L++MR LF++  R++    +P   +  PK      +  +++ ++   +   
Sbjct: 69  YKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAPA 128

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
              S   + +   E L   GLR S+        +      I+          + L +  +
Sbjct: 129 TEDSLELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEAI 188

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +    KM    F    K  A  A ++    S H +
Sbjct: 189 YWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGESLSPHVL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 288


>gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
 gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 37/325 (11%)

Query: 36  PYPHESTFIPAYMSALTGSTPK--REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSR 92
                     A    +    P+  +       +    +   +++Y +       LA N+ 
Sbjct: 2   GSTVTPAPERAGAEPVRAEPPRAGQPQGEGSARPRNAIDRAVNDYLQHMGVERGLAANTL 61

Query: 93  ISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMR 141
            ++     +        G      +T +H+   V++              SA + + ++R
Sbjct: 62  SAYRRDLARYANYLAACGPSRPGDVTRRHVTGFVQALSDGSDGGTALGVRSAARTVVAVR 121

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197
            L K+   +     +P   V  P       +  + +++ +        +    + R   E
Sbjct: 122 GLHKFWALEGITTADPASDVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLE 181

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKTQKTGTIITVELPDG 240
           FL  +G R S++    V  +                       +     G          
Sbjct: 182 FLYSTGARISEAVGLDVDDISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVR 241

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
              LLA    G    F+N    +++        KA A KA +  + S H +R   AT   
Sbjct: 242 GRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLL 301

Query: 299 DAGATAHELMATYGWKTVDQAETYT 323
           + GA    +    G  +V   + YT
Sbjct: 302 EGGADVRVVQELLGHASVTTTQVYT 326


>gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 300

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 67  KPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGV 123
              T    I  +         L+ N+  ++ +      R          + +   +R  +
Sbjct: 3   TEYTPDRAIDLFLDHLWSTKGLSDNTLSAYRTDLRHFDRHQQLKGLKLVESSQFDVRDYL 62

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +R       +S+ + ++S+R  F + V  + ++ +P   +E PK   +     +++D+ 
Sbjct: 63  ATRFDKGFAKTSSARMMSSLRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDDID 122

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
           +  S          + +   E L  +GLR S+     ++ L      ++           
Sbjct: 123 RLLSEPQADDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLV 182

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                    +   L    ++LL               +       F    K  A +A + 
Sbjct: 183 PLGELAVGEVENYLKFARVELLKGKQSDVLFPSKRAQQM--TRQTFWHRIKLYALRANIS 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              S H +R   AT   + GA    +    G   +   + YT  A   RL 
Sbjct: 241 TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLA 290


>gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
 gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           3008A-a]
          Length = 307

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 291

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130
           ++  + +        + N+ +S+     + I    +        +   I + + + + + 
Sbjct: 3   IVEAFYEHLCQKQRFSQNTVMSYLRDIKKYIEFLNNTGIKIEDTSQATIITYIINMQKSG 62

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183
               +  + + S++V +++  +   +     + ++ PK +    +  TK++++      +
Sbjct: 63  RSNSTIARAIVSLKVFYEFL-KDHNIVDIGKIEIDPPKLERTPPQILTKDEVEKLLSCPR 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +G + +   E L  +G+R S+     +  +      I  +       + +    ++
Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICRNKKRDRIIPIGSYAIE 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +         +          F+N +  +M    F    K     AG+NK  + H +R 
Sbjct: 182 AVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFYTNVAGINKEITPHILRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G   +   + Y + A+  
Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIK 279


>gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B]
 gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B]
          Length = 305

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           L+ ++  +      L+ N+  S+ +   +++       +    I+   ++          
Sbjct: 14  LVEQFLDAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQEYQSHLVDLD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAV 193

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTDQLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046]
          Length = 280

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 96/271 (35%), Gaps = 12/271 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128
           L     +Y++       +  +  ++   ++ ++R  GD D    +T+ ++          
Sbjct: 3   LSEAWKKYQQDKKIEGYSTLTLKTYCFQYNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W+  + Y+  NP   ++ PK      +  ++ +++  +     
Sbjct: 63  KPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLREACQT 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
            +     FEF+  +G R  +  +     +       I   K      V         L  
Sbjct: 123 -TMENALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKR 181

Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                              K++M+        K  + +AG+ K    H +R   AT   +
Sbjct: 182 YLDEREDDDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +  + Y + + +IR
Sbjct: 242 NGAPIDVIQSLLGHEKSETTKIYAQLSGKIR 272


>gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
 gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098]
          Length = 312

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127
              EY        L++ + +S+    +       + D        +       + + +RK
Sbjct: 24  AWGEYL--LAQRGLSMRTVVSYRQDLENFFLFLDELDAGDKTSLDEHDLFLYLAWLRARK 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           +   +  + L+++R  F++ V +  +  NP   +E P+         +K +M +      
Sbjct: 82  NAGRTLARRLSALRGFFEYTVEEGLLESNPASLLESPRLPQYLPEVLSKAEMDRLLQLPD 141

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+ C   V  +      +  + K      V L    +
Sbjct: 142 MREKCGRRDRCLLEMLYAAGLRVSEVCNLLVADVDMQRGLVLVSGKGAKDRLVPLHSLVL 201

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            LL          F    +           +        K  A  AG+ +S   H  R  
Sbjct: 202 DLLQQWLSFWRDDFSPQSRYLFLNRSGKGLSRQYVWKMVKKYALLAGIRRSISPHTFRHS 261

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            AT   + GA    +    G   +   E YT   A+R+ 
Sbjct: 262 FATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLH 300


>gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii]
 gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 106/321 (33%), Gaps = 14/321 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             R+      F     +  R     +     A +S +     + +Y + P+++  T + L
Sbjct: 4   VKRNNIWWMSFTYEGRQVRRSTETSDKKLAEAILSKVKVQIVEGKYFDKPKEEARTFREL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           +  Y +         +    + +    +    G+     +T K I +    R     TP+
Sbjct: 64  MDRYLREHASRR---SGYRRYVNMVTNLTAHFGNPKLEHVTPKTIVAYKNKRYADGVTPA 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L  M+  F  A R+     +  +     +R+      W   + ++     S    
Sbjct: 121 TINRELALMKKAFNLACREWEWTKDNPVCRVSMERENNTRDRWLTCEEERRLLAASAPWL 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTP 249
             +   F +++GLRC +        +  N  +    K   G   T+ L    ++ L    
Sbjct: 181 QEVI-VFAIHTGLRCGEILNLTWAGVDLNRRTATVFKSKNGERRTIPLSHTLVQALQNKA 239

Query: 250 IGKETF----FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304
            G+       F +     ++A      F+        ++   H +R  SAT    AG   
Sbjct: 240 RGRRMDSELVFTSAAHTPLDAPNLRRSFRLALKHGQVLDFRFHDLRHTSATRMVQAGVDL 299

Query: 305 HELMATYGWKTVDQAETYTKG 325
           +++    G K+    + Y   
Sbjct: 300 YKVQRILGHKSPMMTQRYAHH 320


>gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
 gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703]
          Length = 299

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128
           I ++  +     +LA N+  S+      +                  ++S +  R    +
Sbjct: 9   IEQFLDAVWLERNLAENTLQSYRRDLRTLAAWLAHHHASLSDARPDDLQSFLAERVDGGY 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S+ + L++MR LF++  R++    +P   +  PK      +  T+  ++   +    
Sbjct: 69  KATSSARLLSAMRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQVESLLAAPAT 128

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPD 239
                 + +   E L  +GLR S+     +  +      ++      ++    +  E   
Sbjct: 129 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 188

Query: 240 GFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVN---KSAHGVR 290
              + L             +          M    F    K  A  A ++    S H +R
Sbjct: 189 WVEQYLEYGRPWLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASIDSARLSPHVLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 287


>gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
 gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB]
          Length = 302

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
            LA  +  S+ S   ++     +        +    + + +     +   +S  ++L+++
Sbjct: 24  GLAKATLDSYRSDLSRLALWLANNASEPLLDLHETTLTAFIAHLAKQTRATSQARYLSTL 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           R  ++W + +  +  +P L +  P R +   +  +++ ++         +    + R   
Sbjct: 84  RRFYRWQLGRGRIVADPTLKLANPSRPSRLPKVMSEKQVEALLDAPDLDTPLGLRDRAML 143

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E +  +GLR S+     +  +      ++   K      V L    ++ +          
Sbjct: 144 ETIYATGLRVSELVNLRLHEVSLADGVLRALGKGSKERLVPLGQLAIEWIKRYLNEARPD 203

Query: 256 FINNDKQ----------KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
            +N               M    F    K  A  AG+     S H +R   AT   + GA
Sbjct: 204 ILNGQHSDDLFITARGGGMTRQAFWQLIKRYALIAGIAPDKLSPHVLRHAFATHLLNHGA 263

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291


>gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 390

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 114/355 (32%), Gaps = 23/355 (6%)

Query: 14  ERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSP 64
           E    GK  YY R        ++++L  P   +   A   A    +        +     
Sbjct: 36  EVRSSGKATYYLRYRDNTGQLKQVKLGTPETLSLDEARTRARATKSQTLIGFDPKAEQEK 95

Query: 65  RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            K   T K  +   Y    +  +   +          +++R  G      I T  +    
Sbjct: 96  IKAIPTFKDFVYDSYL--PYAKTYKKSWEQDQTMIEQRMLRVWGRRKLNSINTHDLIEFQ 153

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +         S  +++  ++ +F  A R E +   P  +  + +      R   +E++ 
Sbjct: 154 NNLVKGGLKAGSVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVY 213

Query: 181 QFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIIT 234
           +        +        EFLL +G R +++     Q +           +  K G   T
Sbjct: 214 RLLEALNSCKSQVVPDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKT 273

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           V L +  +K+L         +   N +       F   +     +AG+     H +R   
Sbjct: 274 VPLSEAAIKVLKRRADNGSRWVFPNPETGKPLRHFHNTWDRIRKQAGIPSARLHDLRHSF 333

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDSDD 347
           A+   ++G + +E+    G   +   + Y     D ++   + +  +  +   ++
Sbjct: 334 ASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKEATEIAGSLVGIRKVEN 388


>gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans
           CH34]
 gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 90/282 (31%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK-- 127
           L+  +  +      LA N+  ++      + R     G      +    +     +R   
Sbjct: 11  LVDRFCDALWLEDGLARNTIDAYRRDLAMLARWLHESGTTALLGVDDTALSGYFAARHLE 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SSA + LT  R  ++WA+R+  +  +PCL +   K+     +  ++  +        
Sbjct: 71  TRASSANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPD 130

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGF 241
                G + R   E +  SGLR S+        +  N    +    K      V      
Sbjct: 131 IETPLGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFGAQA 190

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              L                 +  F+    + M    F    K  A  AG+    S H +
Sbjct: 191 GDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSPHTL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 251 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 291


>gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 351

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 117/337 (34%), Gaps = 15/337 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G      R    +  R           +  + L     + +Y +       T K L+
Sbjct: 3   KRDGIWWTCIRHRGRKIQRSLETKNKKLAESIEAKLRTELIEGKYFDKYEGDLKTFKDLM 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132
             + K      +++N + S+ +    ++   GD     IT K +     SRK+    P++
Sbjct: 63  ERFMKEHAPK-VSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNLGKKPAT 121

Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + L  +   F  AV++  ++  NP   + + K   E  R  + ++ ++      E   
Sbjct: 122 INKELAMLSKAFCLAVKEWEWIRDNPASKISKEKEANERDRWLSDDEEKRLLENSPEWLS 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTP 249
                 F L++GLR  +        +      I  Q+   G   T+ L    + +L    
Sbjct: 182 D--IIVFDLHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLDILMEKT 239

Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
             +    +  F ++   KMN       F     KA + N   H VR   AT  A  G   
Sbjct: 240 KVRSLKGDFVFPSSVMTKMNRRNLVRAFDIAKEKASIQNFHFHDVRHCFATRLAQRGVDI 299

Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
           + +    G   +   + Y     + +R GI+   ++ 
Sbjct: 300 YRISKLLGHLNITMTQRYAHHCPESLRGGIEVLEKVD 336


>gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 346

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 10/302 (3%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            R     +     A +  +     +  + ++   K  T   ++  Y K       A  SR
Sbjct: 11  RRSTGTTDRRLAEAILGKIRVKIVEGRFFDTLEAKDHTFNDMMDRYLKERSITK-APASR 69

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
              E     +    G     +IT K + +    R+ T  P++  + L  +R  F  A+R+
Sbjct: 70  QRDEQCLAHLRDAFGPLTLAEITPKLLAAYKAKRRETTKPATVNKELGLVRHGFNVAIRE 129

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                +  +     +        W   + +            +    F L +G+R  +  
Sbjct: 130 WEWCRDNPMQRVCMETVRNERDRWISSEEEGRLLAN-SAPWLQDMIVFALNTGMRRGEIL 188

Query: 211 RAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--- 265
               Q +      +   +   G   TV L    ++LL      +                
Sbjct: 189 NLQWQAVDLIRQVLVVMRSKNGEKRTVPLNGRLVELLRRKATMQAKGSFVFSSAASTLVD 248

Query: 266 ATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A   +  F+  A KA  ++   H +R   AT  A AG   +++    G K+    + Y  
Sbjct: 249 ARNLTRSFRLAAKKAQLIDVRFHDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAH 308

Query: 325 GA 326
            +
Sbjct: 309 HS 310


>gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18]
 gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 109/338 (32%), Gaps = 23/338 (6%)

Query: 11  VTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + + +T+ GK+ Y    R               T    +      +  +  +  +   K 
Sbjct: 4   IQERKTQDGKVTYRVLVRLKGYPPQS-ATFERKTDAKKWAQQTEAAIREGRHFKTREAKK 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            T+  ++ +Y K+         S+ + E        + G +    +T   I    +    
Sbjct: 63  HTVAEMVDKYVKTVLPT--KPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECRDKLLA 120

Query: 128 --------HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                    +P++ ++++ ++   F        +V  +P   V++PK     +R  T ++
Sbjct: 121 GKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRFLTDDE 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIIT 234
             +            L    LL   +G+R S+      + +      +    T       
Sbjct: 181 RNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDTKNGERRN 240

Query: 235 VELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           V + +    +L      +         +       +     + A    A + +   H +R
Sbjct: 241 VPVVNLAHSVLTERSKVRRLGTELVFPSISDPTMPSNLRKSWAAAVRDANLEDFRFHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +A+  A  GAT  E+    G KT+   + Y   +++
Sbjct: 301 HSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQ 338


>gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
 gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015]
          Length = 311

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 29/298 (9%)

Query: 61  INSPRKKPTTLKWL----ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             S   + TT+       I  +  +      L+ N+  S+ S   Q+    GD     + 
Sbjct: 2   AKSKSSRATTVSAADDVIIRRFLDNLWMSHGLSDNTLGSYGSDLRQLSSFLGDKGSHLLQ 61

Query: 116 T-----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                 +   +   S++   SSA + L+S+R  +++ V +  +  +P   +E PK     
Sbjct: 62  ADRGALQDFLAFRLSKRGKASSAARLLSSLRRFYRYQVSEGRLQEDPTALLESPKLGVRL 121

Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIK 225
            +  ++E +++           G + RL  E L  SGLR ++     ++ +  +      
Sbjct: 122 PKSISEEHIERLLRAPDTHTDLGLRDRLMLEMLYASGLRVTELVTLRLEQIDAHHGIVKV 181

Query: 226 TQKTGTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWF 273
             K      V + D  +  L                      F+      M         
Sbjct: 182 MGKGRKERLVPIGDEALAWLGEYLQSARPDLLKGRDTTTPFLFVTRRGGGMTRQTAWNVI 241

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           K  A +A +  + S H +R   AT   + GA    +    G   +   + YT  A+  
Sbjct: 242 KKYAQQAHLGGDLSPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANER 299


>gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S+ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 396

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 115/353 (32%), Gaps = 27/353 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKRE 59
           P +       G   + FR     R +         +  P            L    P   
Sbjct: 38  PGLHICVNMRGNKRWLFRYRLYGRKKAVAIGPYPAIEPPLAKQMANEMQRNLALGEPVVS 97

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +++         EY + A       + +  +    +QII K G+     +T K I
Sbjct: 98  PRAQQKQQKA-FGEFAREYLEHAKQT--KKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEI 154

Query: 120 RSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175
           +  +     + + ++A +    + VL+  AV+   +    NP   V + +      R  +
Sbjct: 155 QGYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPGKNPMPGVSKFRDNPGRTRYLS 214

Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            E+ ++F +   E  G     A   LL++G R  +  ++  + +     ++   +T    
Sbjct: 215 MEECKRFLAALEEVPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGK 274

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNKS--- 285
           +  +    + L  +  +       N      ++           F+     AG+  +   
Sbjct: 275 SRVVHLNPLSLAEIEKLKAFRQPNNPYLFPGSSEDKPLGTVRKTFEHALKLAGLEGTDVV 334

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
            H +R   A++ A+ G +   +  + G  +V   E Y   +    R    +  
Sbjct: 335 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDHLA 387


>gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 297

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 100/299 (33%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +    + +         + N+  ++   F+Q I+  GD +  +IT   I     + +   
Sbjct: 3   VSECCNLFLSYMA--DKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQN 60

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L S+  LF++ +  E V  +P     RPK   +     + E++++      
Sbjct: 61  RKSSTIARKLASVNSLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLIDAL- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230
           +  Q +      L +GLR S+       ++                              
Sbjct: 120 DSIQDKAIVILFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVV 179

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                   V +    +++L         F  +N     ++        +    K  +   
Sbjct: 180 GKGDKEREVPITGKPLEILVQYLKSINEFLDVNEYIFPISYHLLWRKIRNIGKKLAITLH 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +AT++  +GA    +    G  +      Y K   + +L +K ++ +S  ++
Sbjct: 240 PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAK-VGQKQL-LKATKALSENIE 296


>gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21]
 gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21]
          Length = 292

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 93/267 (34%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
              A N+  ++    ++ +   G+ +   I    +   +   K     P S  + L+++R
Sbjct: 16  KGAAANTVAAYSRDLNRYLLFLGEREPDGIRPIDVTGFLAKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197
           +L ++ +R+ Y  +NP   VE PK   +     +  +++   S   +      + +   E
Sbjct: 76  MLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREVEALLSSPHDTGAQELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            L  +GLR S+     +  +  +    +   K      V + +   +             
Sbjct: 136 LLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLVPIGESACRATGAYLQKARGEL 195

Query: 257 INNDKQK----------MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
           +                M+   F    K +A +AGV    S H +R   AT   + GA  
Sbjct: 196 LKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRASISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R R+
Sbjct: 256 RSVQIMLGHADLSSTQIYTHVT-RERM 281


>gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125
               I +Y+        L+ N+  ++    +++              KIT + I+  + +
Sbjct: 3   WNNYIKDYQSYLRIERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P S  + ++ ++  F + V ++Y   +P   +E PK   +       +++    
Sbjct: 63  ISKEVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLAVKEIDALI 122

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                  +EG + R   E L   GLR S+     +  L  +   IK          V + 
Sbjct: 123 DAIDLSSNEGERNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKITGKGNKERFVPIG 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285
               K + +                          ++         K  A K  +NKS  
Sbjct: 183 KLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIKDLAVKINLNKSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G +++   E Y  
Sbjct: 243 PHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVH 281


>gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans
           LB400]
 gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia
           xenovorans LB400]
          Length = 311

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               ++       + +      L+ N+  ++                  + T        
Sbjct: 18  ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +K   +SA + L+  R  + WAVR+    ++P + +   K+        T+  ++
Sbjct: 74  YSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVE 133

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                    +    + R   E +  SGLR ++        +  N   ++          +
Sbjct: 134 ALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+    + M   QF    K  A  AGV   
Sbjct: 194 PFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAP 253

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
 gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14]
          Length = 302

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 100/280 (35%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127
           L+ ++  +      LA N+ +S+ +   +++      D+    I+   +           
Sbjct: 11  LVEQFLDAMWMERGLAENTLMSYRNDLTKLLLWMEQHDYRLDFISLAGLLEYQSWLTDQD 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  + +P   +  PK      +  ++E ++   +   
Sbjct: 71  YKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQVEALLNAPD 130

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++           K G    V + +  +
Sbjct: 131 PNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKERLVPMGENAI 190

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           + +                    F +   Q+M    F    K  A  AG++    S H +
Sbjct: 191 EWIETFIAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAGIDVEKLSPHVL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 290


>gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
 gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 89/276 (32%), Gaps = 30/276 (10%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHIRSGVESR 126
           Y         LA N+  S+     +        D   +T            H+R G E  
Sbjct: 4   YLDHLTVERGLAANTLSSYRRDLRRYAEFLAQQDVDDLTAVSEATVSGFLAHLREGSEEH 63

Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA + + ++R   K+AV    V  NP   V+ P+ +    +     D++     
Sbjct: 64  PALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSDVEAILEA 123

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + R   E L  +G R S++    V  L           K G    V +  
Sbjct: 124 AGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGKGGKERIVPVGS 183

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ +                    F+N    +++           A +AG++K  S H
Sbjct: 184 YAIEAVEAYLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAERAGIDKDVSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 TLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 279


>gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
 gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3]
          Length = 304

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRK 127
           LI  +         L+ N+  ++ +  +   R          +++ + IR  ++    + 
Sbjct: 14  LIELFLDDLWSSRGLSDNTLSAYRTDLNHFDRHIQRSGQQLTEVSQEGIRGYLDIRFEQG 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + ++S+R  + + V  + + INP   ++ PK   +     ++ D+ +  S   
Sbjct: 74  FARTSSARLVSSLRRFYGFLVICKKIEINPTAQIKSPKIARKLPGSLSEFDVDRLLSEPD 133

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++ L      ++    G     V + +  +
Sbjct: 134 VEDSIECRDKAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKERLVPMGELAV 193

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +                 +  F +     M    F    K  A ++GV    S H +R
Sbjct: 194 DNIEYYLQGARAELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGVSTELSPHTLR 253

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT   + GA    +    G   +   + YT  A           R+S +     P
Sbjct: 254 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 302


>gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 310

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 30/287 (10%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSG 122
              T+   +++Y         LA N+ +S+     + +    + G     +IT   +   
Sbjct: 4   ATVTVGQAVADYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPDEITEADLLGF 63

Query: 123 VESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           V   +           +S  + + ++R L ++ +R++ VA +   +V+ P+      +  
Sbjct: 64  VALLRTGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKAL 123

Query: 175 TKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220
             E ++               + R   E L  +G R S++    V  L  +         
Sbjct: 124 ALEQVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGK 183

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                I    +     +       ++   +       F+N+   +++           A 
Sbjct: 184 GGKHRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAAR 243

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AGV  + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 RAGVETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725]
 gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 291

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 97/282 (34%), Gaps = 24/282 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGV 123
            ++      Y +       + N+  S+     + I    D         + T       +
Sbjct: 1   MSIIEAFGNYLQ--RQNRFSQNTISSYLRDAKKYIEFLDDIKIKLENTSQTTLIAYIISM 58

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    + S+  + + S++V +++  + + +     + +E PK +    +  T++++++  
Sbjct: 59  QKGGKSNSTIARAIVSLKVFYEFL-KIQDIVDIGKIEIEPPKLEKSPPQILTRDEVERLL 117

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           S   E    G + +   E L  +G+R S+     +  +      I  +       + +  
Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGS 177

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +  +         +          F+N   ++M    F    K  A  A ++K  + H
Sbjct: 178 YAISAVEKYLRHSRPYLAKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDKEITPH 237

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + Y + A+  
Sbjct: 238 VLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279


>gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127
           +  I E+  S      L+ N+  ++     +          + +     + + +   +R 
Sbjct: 15  REAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAEDLNAYFAARH 74

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               PSS+ + L  ++  F+ A+RQ +VA +PCL +   ++     +  ++  ++   + 
Sbjct: 75  DQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSEGQVEALLAA 134

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E +  SGLR S+        +  N   ++          V   + 
Sbjct: 135 PDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEE 194

Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHG 288
               L           +                M    F    K  A +AGV    S H 
Sbjct: 195 AGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSPHT 254

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 255 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 296


>gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4]
 gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 294

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 99/298 (33%), Gaps = 30/298 (10%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125
           K  I ++ +      +++ ++  ++ S  +Q +           D   +T   IR  +  
Sbjct: 2   KQAIEQFCRYLSTERNVSPHTLGAYRSDLEQFLAFIDREQRPGADVNSVTHLLIRRYMAQ 61

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
               H  SS  + L ++R  F++ +R+   A NP   V  PK + +       +++    
Sbjct: 62  LHKDHQKSSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTALV 121

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
              +S  S   + R   E L   G+R S+     V  +  +    +   K      V + 
Sbjct: 122 EAPQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNKERIVPVG 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATK--AGVNKSAHGVR 290
                 LA     +    ++          ++ +   +        K  A    S H +R
Sbjct: 182 TYARNALAAYLASRNNPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAAMKKVSPHTLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT   + GA    +    G  ++   + YT  +           R+  V D   P
Sbjct: 242 HTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVS---------IDRLMEVYDKAHP 290


>gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 296

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 95/299 (31%), Gaps = 32/299 (10%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SR 126
            +I ++     H   L+ N+  S+ +  +Q              +    I++ +      
Sbjct: 5   EIIEQFLDIMWHERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRLEIQAFMASRFDL 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS  + L+++R  +++  R++    +P   +  PK         ++ ++    +  
Sbjct: 65  GYKASSTARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEVNALLAAP 124

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGT 231
                   + +   E L  +GLR S+     ++ +      ++                 
Sbjct: 125 ELDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEA 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           +   E      +   +  +  +  F +     M    F    K  +  AG+  + S H +
Sbjct: 185 VYWTERFIAEGRATLLKGLTSDVVFPSRRGNFMTRQTFWHRLKHYSQVAGITTHLSPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R   AT   + GA    +    G   +   + YT            + R+  +     P
Sbjct: 245 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV---------ATARLEQLHSEHHP 294


>gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
 gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4]
          Length = 303

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE---SRK 127
           LI  +         L+ ++  ++ S      R            +   +R  +       
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S+ + L+S+R  +K+ + ++ + ++P   ++ PK   +     ++ D+ +  S  +
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E L  SGLR S+     +  +      ++          V   +   
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +                    F +     M    F    K  A +AG+  + S H +R
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   + GA    +    G   +   + YT  A + RL 
Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARLA 293


>gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1]
          Length = 306

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
             +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    +  +    +    R     +  + + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284
               K +    I     +            N   ++++        +     AG++    
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYT 287


>gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 328

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 91/306 (29%), Gaps = 32/306 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---G 107
               P     ++  + P  L+  +  + +       L+ N+  ++     +        G
Sbjct: 4   AADGPGGAAPDTAPEVPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG 63

Query: 108 DFDYRKITTKHIR------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             D    T+ H+          E    T SS  + L+S+R   ++ V +  V ++     
Sbjct: 64  VADPADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQ 123

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           + PK  +   +  + E M +             + +   E L  +G R S+     V  +
Sbjct: 124 KPPKLPSRLPKAVSVETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDV 183

Query: 218 QNN----------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                                 +                   +LA         F+    
Sbjct: 184 LGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRG 243

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++     +  KA A +AGV    S H  R   AT     GA    +    G  +V   
Sbjct: 244 HALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATT 303

Query: 320 ETYTKG 325
           + YT+ 
Sbjct: 304 QIYTRV 309


>gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)]
          Length = 282

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 87/269 (32%), Gaps = 23/269 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHT 129
           +  Y  S      +  +  ++ S   + I           ++T + I   +         
Sbjct: 9   LEGYLGSLKARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQDIDRFMLELSKMGWD 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S      ++R   K+  R          +   PKR     +  T+E++ +      + 
Sbjct: 69  QNSLFTVAVAVRSFLKYLGRNV--------NYPLPKRPKMLPKYLTREELTRLLGACQDD 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF----MKL 244
            +  +     L +G+R S+     V  +  +  SI+          V   D       + 
Sbjct: 121 YEKLIIGL--LLTGVRVSELVNIRVSDIDIDKRSIRVVGKGYKERVVFFADWLVPLLKRY 178

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L             N  Q ++        K    +AG+NK  + H +R   AT+S  +G 
Sbjct: 179 LRQNKSEWLFPSEINPDQHVHYVTVERILKKIVKRAGINKKVTPHTLRHTFATLSLASGL 238

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
              E+    G  ++   + YT   D  RL
Sbjct: 239 DIREIQELLGHSSLSSTQIYTH-VDPQRL 266


>gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 331

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 98/296 (33%), Gaps = 36/296 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L   + +Y         L+ N+  ++     + +R     G  D  +ITT  + S  E  
Sbjct: 24  LGNWLEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRGIDDPSRITTADVTSFEEEL 83

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      PSS  + + ++R+   +A R+  V  N   ++  P+      +    ++
Sbjct: 84  SRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVDE 143

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKT 229
               +   +     G +    FE L  +G R S++    V  L       +       K 
Sbjct: 144 VARLIDSIERQTPIGLRDAALFEVLYGTGARISEALSLDVDDLTRVLADPDGPLRVVGKG 203

Query: 230 GTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
                V L       +                      F+N    +++        + +A
Sbjct: 204 NKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWEALRTRA 263

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            +AG+  +   H +R   AT   D GA    +    G  +V   + YT+  A ++R
Sbjct: 264 RQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLR 319


>gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
 gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86]
          Length = 299

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 27/279 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHT--PS 131
           Y K      L+ NS  ++    +++     D +       I  + I+  +     +  P 
Sbjct: 13  YLKIE--RGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYEISKSVNPR 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  + ++ ++  F + + ++Y   NP   +E P+   +       ED+ +  +  +    
Sbjct: 71  SQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAAINLTTN 130

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGTIITV 235
           EG + R   E L   GLR S+     +  L                  +   +       
Sbjct: 131 EGERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFVPISEYTQKYIE 190

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
              +    LL++    ++T F+N   +++         K  A + G+NK  S H  R   
Sbjct: 191 IYKNTDRNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISPHTFRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   + GA    +    G +++   E Y    DR  L 
Sbjct: 251 ATHLLENGADLRSIQLMLGHESITTTEIYMH-VDRKHLS 288


>gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis
           z3032]
 gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032]
          Length = 298

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKH 128
           I ++  +     +LA NS  ++      ++           T +      + +      +
Sbjct: 8   IEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             +S  + L+++R LF+   R++    +P   +  PK      +  ++  + +       
Sbjct: 68  KATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVDRLLQAPTV 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 EEPIELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +         +          F +N  ++M    F    K  A  AG++    S H +R
Sbjct: 188 WVEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
 gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str.
           Rustic]
          Length = 306

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             I ++ +      +L+ NS +S++                +  ITT++IR  +E     
Sbjct: 2   EFIVQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + + A NP L+V+ PK + +     +   ++      
Sbjct: 62  DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  +        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNHEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 394

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 111/347 (31%), Gaps = 23/347 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTP-----KRE 59
           P  T E    GK  YY R        ++ R+      +   A   A    +         
Sbjct: 31  PGFTLEVRSTGKCTYYQRYRDKFGRVKQARIGPTDSISLEDARHRAKQIRSQTIMGYDPR 90

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                 +   + K  + +  K   +  +   S    E   + +I+   G+    +IT   
Sbjct: 91  EQVEKNRNMPSFKQFVED--KYIPYIKVHKRSWEFDEKLINQRIMPLWGNMKLSEITRDD 148

Query: 119 IRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           ++          H P S  +++  ++ +F  A R E +  +P   V R + +    R  +
Sbjct: 149 VQELQSNFLRMGHKPGSVNRYMALVKYIFNLAERWEVIDKSPTRHVSRLEEENHKERYLS 208

Query: 176 KEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTI 232
            ++ ++  S              EFL+ +G R S++     Q L           +    
Sbjct: 209 SDETERLLSELKKCRSPVVPDIIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNKA 268

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVN-KSAHG 288
              ++       L +    KE                  F   +     KAG+     H 
Sbjct: 269 KVKKVIPLSRGALNVLERRKENGCEYVFPNPETGEPMKHFHGTWDRIRKKAGIPDVRIHD 328

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           +R   A++  ++G + +E+    G   +   + Y   + D ++   +
Sbjct: 329 LRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLSQDTLKDATE 375


>gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18]
 gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18]
          Length = 402

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 105/343 (30%), Gaps = 26/343 (7%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIPAYMSALT-----GSTPKREYI 61
            +    +++G+  +  R     R +   +      +   A                    
Sbjct: 43  GLHLRVSKNGRRFFQHRYRFFGRKKCLNIGEFPAVSLQEARQRVAEHKSSLARDKDPAEE 102

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
               +   T     ++Y    H                  +    G      IT++ +  
Sbjct: 103 RGKARNDLTFAEFATQYYL-PHAKEHKKTWDDDVWKVEKLLNPAFGKQRLSGITSRDVAL 161

Query: 122 GV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               E  + + ++A   L++++ +   AV+ E +  NP  S E+ K   +  R  +K+++
Sbjct: 162 LCSKEKARTSATTANHLLSTLKRMLNLAVKWELLEKNPASSQEKFKEPPQRERYLSKDEL 221

Query: 180 QQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +F S   E        A   LL++G R  +        ++ +   I    T    +  +
Sbjct: 222 PRFLSALDEEDDGLSVAAIRMLLFTGCRRGEVLSLKWNEVRLDEDCILLLDTKNGRSRMV 281

Query: 238 P-----DGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN-K 284
                    ++ L      +     +                     F+    +AGV   
Sbjct: 282 HLNARAKAVVEELHENRDKEVRTAASEYVFPSRQGTKKGHLFDLRKPFEKACQRAGVENF 341

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   A+++   GA+  ++    G + +   + Y   +D
Sbjct: 342 RIHDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSD 384


>gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 300

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 99/263 (37%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S+ +   ++I    D   D ++I    +R  +     R  + SS  + +++
Sbjct: 18  KNASDHTIRSYMNDLVELINFVKDESIDIKEIDFFALRGYITTLYDRSLSKSSIERKIST 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           ++  FK+  ++ Y+  N    ++ PK++ +  + +  +D+        + +    +  L 
Sbjct: 78  IKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLELPDKNTPQGIRDALL 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
            E +  +G+R S+     +  +      ++ +        + L +  +  +         
Sbjct: 138 MELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAEFHIDFIKKYLATRDD 197

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                 I  +  FIN +   ++        +     AG+    S H  R   AT   ++G
Sbjct: 198 IPKSRTIKTDKLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFSPHSFRHSFATHMLESG 257

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A    + +  G  ++   + YT 
Sbjct: 258 ADLRTIQSLLGHSSLSTTQKYTH 280


>gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
 gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703]
 gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis
           L2-32]
          Length = 317

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 42/298 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           ++ LI ++         LA  +  +++S   +        G  D   +TT+ +   +   
Sbjct: 4   IERLIDQFLAYIDVERGLAKATVRAYDSDLRKYNGWLATQGIQDLNAVTTQDVERYIAFL 63

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------- 175
             +  SA    + L S+    ++A+ +  V+ +    V+ PK  T      T        
Sbjct: 64  DDSGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLL 123

Query: 176 ----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                     + +            + +   EF+  +G R S++C A +  +       +
Sbjct: 124 DAIPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVAR 183

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270
              K      V +     + +A           +  K                 +     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVW 243

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +A   +A ++K    H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 244 EIIRAAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 301


>gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 296

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 101/275 (36%), Gaps = 25/275 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT 129
           I ++    ++   LA NSRI+++    +  +   +       + I+   I + +  +   
Sbjct: 5   IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
               SS  + L+S++  +K+ + +  +  NP   +E PK K +  +  + E+    M+Q 
Sbjct: 65  GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E +  +G+R S+     V+ L      ++          + +    
Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +  +                + T F+N   + ++   F         KA + K  + H +
Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVTPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G   +   + YT 
Sbjct: 245 RHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279


>gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107]
 gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107]
          Length = 370

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 115/358 (32%), Gaps = 26/358 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
                 + RHGK   Y R+   +   +           + +         E   +   K 
Sbjct: 7   KGFKIFKDRHGKQRCYHRETGHK---VDLTDAPIGSAKFFAECETIRAIAEAQRAKAPKA 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
            TL  LI  Y ++ H+ +LA  +R  +    D  +    D     I T  I    +   +
Sbjct: 64  GTLGGLIQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLIAGIHDKAAK 122

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183
           K     A    T +  +F++ + +  ++ N         RP+ +    RPWT E+     
Sbjct: 123 KIGWRRANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERDTVL 182

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    R+A   ++ +GL  SD+ R     +          KTG  + + +      
Sbjct: 183 GK--AKPHVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPTLQA 240

Query: 244 LLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296
            L   P                     +     FK      G+     +  G+R   AT 
Sbjct: 241 ALNRMPNHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTVATT 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLGI---KNSRRISSVVDSD 346
             +AG     +    G KT   A  Y++ A     +R  +     +N RR  SV  S 
Sbjct: 301 LREAGLDERRIADLLGQKTPSMARHYSRSANLANKNRETMATLEEENRRRAESVKPSQ 358


>gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13]
 gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B]
 gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19]
 gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 301

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 24/296 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           K +I+ Y        SL+ NS  ++ +  D+++R + D   D ++I+   ++  +   + 
Sbjct: 5   KDIINRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEKKDVKEISYDDLQQFIAQLRD 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + ++ ++  +++ +   Y+  +P   +E PK   +     T  ++      
Sbjct: 65  IGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDT 124

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
                 EG + R   E L   GLR S+        +      I+ +  G+          
Sbjct: 125 IDLTLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISEV 184

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               ++        + +    ++  F++     ++        K +   AG++K  S H 
Sbjct: 185 ALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   AT   + GA    +    G + +   E YT   DR  L  +          
Sbjct: 245 FRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTH-IDREFLRKEILEHHPRSRP 299


>gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
 gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter
           sanguinis PC909]
          Length = 374

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 99/368 (26%), Gaps = 44/368 (11%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF  G   G+  +       T   A  +               +    TL+
Sbjct: 6   RKRGDKWSYYFTIGKVDGKYKKKEKSGFVTKKEAETALREALRQYETDGVVSKHSDYTLQ 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             I  +  +     L   +  +++      I  + G  + +K T   ++     +  T +
Sbjct: 66  EYIQYWFDTIAINYLKFETMHNYKCVATKHIYPEIGHLNIKKATPTVLQKYFSEKLKTYN 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFW 186
            A   ++ +R +     +          +           +  T       +        
Sbjct: 126 -ADSIVSIIRNILSNTFKLAVKQNILPRNPMAQIELKSQKQKETAMRVVNKNDIDNLLLE 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
            + ++  + F   +++G R  +        +     ++   K                  
Sbjct: 185 IKDTRYYIPFIIAIHTGARRGEILGLTWDDVNFENNTLTINKILQYQQGNGLVLSSTKTS 244

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFK 274
                       +         +LL     G   F        N+D   +N    S + K
Sbjct: 245 SSVRTVLMTSTLVHELQEYRKSQLLRKEYYGNHYFSEQSFVCCNDDGSPINPLSLSQFTK 304

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
             + K G     H +R   AT+  +A      +    G + +      Y+   +  +L  
Sbjct: 305 KISQKYGYRFRFHDLRHTHATMLLEADVNIKVIQQRLGHENIKTTLNVYSHLTN--KLDE 362

Query: 334 KNSRRISS 341
               +  +
Sbjct: 363 DAINKFDN 370


>gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
 gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4]
          Length = 302

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 27/285 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123
           L+  + E+ +       LA N+  ++ +             +  +    +R         
Sbjct: 2   LEKWLEEFLEFLRVERGLADNTIAAYRTDLKHFCAFVARRQFS-LDPSSLRDACLCYLYE 60

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +  +  S+  + L +++    +   Q  Y+  +P   +  PK      +    E++++
Sbjct: 61  LNAAGYLASTVARRLAALKSFCAYLATQAGYLPWDPAEELSSPKIPERLPKVLRPEEVER 120

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
             +     +    + R   E    +G+R S+     V HL      ++   K G    V 
Sbjct: 121 LLTAPRTNTPQGLRDRALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLGKGGKERIVP 180

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +       L                    F+N    ++         K  A +AG+    
Sbjct: 181 VGRVAQHYLREYLEKAWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYARQAGLTSAP 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S H +R   AT   + GA    +    G  ++   + YT      
Sbjct: 241 SPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTR 285


>gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
 gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400]
          Length = 305

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 98/276 (35%), Gaps = 23/276 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT- 129
           LI+++         L+ N+ +S+ +      R       D  ++    +R  +  R    
Sbjct: 15  LINQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKGKDLLQVDQALLRDYLAERFDKQ 74

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+S+R  + + + ++ ++ +P   ++ PK   +     ++  +    S  +
Sbjct: 75  FAKSSTARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQIDNLLSEPN 134

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------ 236
                  + +   E L  +GLR ++     ++ +      ++    G     V       
Sbjct: 135 IDDPIEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKERLVPLGELAI 194

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                   F +   ++    +  F +   Q M    F    K  A +AG+  + S H +R
Sbjct: 195 TAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQCHLSPHTLR 254

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA    +    G   +   + YT  A
Sbjct: 255 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA 290


>gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 307

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           L+ L+ E+       + A ++  S+     + I+   D   D+   T   IR    S K+
Sbjct: 13  LENLLEEFADYLQTLNYAAHTINSYTKDLKEYIKFLEDNNIDFNDATHYTIRDYFASLKN 72

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + L+S++  +K+ +R  Y      ++++ PKR+    +  +  D+ +    
Sbjct: 73  KKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFLSLNDIDKILEI 132

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
             E      + ++   F+   GLR S+     +  +     +++    G+ +        
Sbjct: 133 DDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGKGSKVREIPLIPI 192

Query: 234 ---TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +L      ++         + F+N   + ++        K     A +  + S H
Sbjct: 193 IYDNWDLYMQKRAIIQREYGSNNNYLFVNRFGKPISDRSVRNSMKRLMRMANISVDFSPH 252

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   +  A    +    G +++   + YT   +  
Sbjct: 253 TLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDR 294


>gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 311

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 111/307 (36%), Gaps = 28/307 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
            K+  T+  +I  Y +      + ++N+  ++++  + +I      + D  K+       
Sbjct: 2   EKENQTIAKVIRSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQIADFEH 61

Query: 122 GV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  RK   SS  + L+ +R  +++ V    +  NP   +E P          + E+
Sbjct: 62  FAFILHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
           + Q ++       EG + R   E L   GLR S+     + ++      I+         
Sbjct: 122 VDQLQNSIDLSKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKER 181

Query: 234 TVEL----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            + +                ++ + P  ++  F+N     +  T   I  K +A  AG+ 
Sbjct: 182 LIPISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIK 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K+   H +R   AT     GA    + A  G ++V   E YT   DR  L     + I  
Sbjct: 242 KTISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTH-IDRESL----RKAIIE 296

Query: 342 VVDSDDP 348
               + P
Sbjct: 297 HHPRNKP 303


>gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
 gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A]
          Length = 301

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 25/270 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
            L+ N+  ++                  D   I +KHI      ++ +  +  +  + LT
Sbjct: 17  GLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKKKGLSAKTISRKLT 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           S++   K+ + ++ V  +    + RPK +       + +++             G +   
Sbjct: 77  SIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRNMA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E +  SGLR S+     ++ +     + I T K      V + D  +  +        
Sbjct: 137 LLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMAIIAIRNYLVKAR 196

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
                   +  FINN  + ++   F    K  A++A ++    S H +R   AT   + G
Sbjct: 197 DDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHTLRHSFATHLLENG 256

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
                L    G + +   + YT    + RL
Sbjct: 257 MDLRSLQNLLGHEDISTTQIYTH-ISQSRL 285


>gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
 gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255]
          Length = 308

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 33/288 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV---ESRK 127
           LI  + ++ H   + + N+ ++++   +   R          K   K I + +   ++  
Sbjct: 7   LIDNFLETIHAERNASKNTLLAYKRDLEAFTRFLSKKRIDLYKANRKDIENYIISLDNHG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            + S+  + L++++ ++++   +  +  NP   ++ PK K +     ++ ++ +      
Sbjct: 67  MSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEINKLLDTST 126

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                  +  +       L  +G+R S+     V  ++ N   +    K G    V L  
Sbjct: 127 QIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGKERLVPLST 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV- 282
                +A   +   +    N K+                 +   +F ++ K    KAG+ 
Sbjct: 187 PAKMAIAAYLVDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYVFIKELCIKAGIS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               S H +R   A+     GA    +    G   V   E YT   D 
Sbjct: 247 PNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDE 294


>gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1]
          Length = 306

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
           + +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    V  +    +    R     +  T + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284
               K +    I     +            N   ++++        +     AG++    
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 361

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 106/321 (33%), Gaps = 13/321 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +  K+ +     +GR++R      +     A ++ +     +  + +   ++  T + ++
Sbjct: 5   KRNKVWWMSFIHNGRQVRRSTDTTDRRLAEAILAKVRVKLIEGRHFDRLEEENRTFQEMM 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132
             Y         A  SR+  ++  + ++   G     +I+ K + S    R+     P++
Sbjct: 65  ERYVAE-RATLKAPKSRLRDQAALNHLLPVFGQKLLSEISPKQLASYKAQRRIEQAAPAT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  +R  F  A+R+        +     ++    +  W   + +            
Sbjct: 124 INKELQLVRHAFNLAMREWEWCRENPMHRVSLEQVRNEVDRWLTPEEEDRLMAA-SSPWL 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPI 250
           R    F L +G+R  +      Q +  +  ++   ++      T+ L     +LLA    
Sbjct: 183 REIIVFALNTGMRQGEILNLQWQDVDFSRGTLIVMQSKNGTRRTIPLNTKVYELLASKQA 242

Query: 251 GKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
                     K  +            F     +AG+     H +R   AT     G   +
Sbjct: 243 ATGLSRGPVFKTPLGNLLQVRFLVREFCEARNRAGIPDFRFHDMRHTFATRLVQRGVDLY 302

Query: 306 ELMATYGWKTVDQAETYTKGA 326
           ++    G KT    + Y   +
Sbjct: 303 KVQRLLGHKTNLMTQRYAHHS 323


>gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
 gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275]
          Length = 377

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 44/371 (11%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  +  +       +G+R R+      T   A    +     +       ++   T  
Sbjct: 5   RKKGDRWYFSVELPQENGKRKRVERRGGKTKKEA-QEKMKLFEAEVLKNGYKKECKMTFD 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
            L + +       +   ++  ++  Y+   I    G++    I  + +       K    
Sbjct: 64  ELYNIWFNEYVLNNCKESTTNNYARYYKKHIKPILGNYKVSDIKARVLSDFFNKLKEEDK 123

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SSA      +     +A+    +  N      +  +  +        DM+ F++    
Sbjct: 124 CHSSANIIRVVISSCLDYAIFPLEIIENNSCKFIKFPKFKKTKDKKDIIDMKDFETILDI 183

Query: 189 GSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQK----------------- 228
           GS         L    +GLR  ++     + +  +   I  +                  
Sbjct: 184 GSSKHNFNNMCLLLLHTGLRIGEALGLQWEDIDFDNKIIHVRHTLIAPNVRECKLSTPKT 243

Query: 229 TGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFK 274
             +I  +   D   K+                         F + D   ++   F+    
Sbjct: 244 KTSIRDIYFNDTVEKVFKNIKKSQNENRLKFGVLYNCNNMVFTHEDGSFLDHHHFTNMVA 303

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
               K  +N S H  R   AT+   AGA   ++ A  G   +      Y +  +  +   
Sbjct: 304 KINRKTNINFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESK--K 361

Query: 334 KNSRRISSVVD 344
           K   + +  ++
Sbjct: 362 KALDKFNDYIE 372


>gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
 gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans]
          Length = 313

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 101/304 (33%), Gaps = 37/304 (12%)

Query: 62  NSPRKKPTTLKWLISE--------YRKSAHW-----GSLAVNSRISFESYFDQII----R 104
           ++  KKP T+   I E        Y  S  +       +A NS  S+       +    +
Sbjct: 2   STSLKKPRTITAGIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCPK 61

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           + G+++   IT   +        +T  S  +   ++   F +    +         V R 
Sbjct: 62  EIGNYETDDITKYLLSLQEIGLLNT--SVARKRVALGQFFGFLKDNDIETKVDMDLVPRI 119

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K   +     T E+M Q  +     +    + +L  E L  +G+R S+     +  L   
Sbjct: 120 KLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLT 179

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQF 269
              I     G+          +  L    + +              F+NN  ++M+   F
Sbjct: 180 ERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGF 239

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +    +A + K  + H  R   AT   + G     + A  G  ++D  + YT   D
Sbjct: 240 WKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTH-ID 298

Query: 328 RIRL 331
             RL
Sbjct: 299 MKRL 302


>gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
          Length = 331

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 13/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           +  Y  S     L++ +  +++                 I T  +R  +  R      SS
Sbjct: 59  LQIYLASKKLDGLSIKTLRNYQYNLAIFANHL-RKPLVAINTMDLRMFLAVRCKSMKQSS 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP   +++ K         T+E+++  +       + 
Sbjct: 118 VNGQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKTD-RE 176

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT--- 248
           +   EFL+ +G R S++       +     S     K      V        LL      
Sbjct: 177 KALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLA 236

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                            ++         K  A++AG+NKS   H  R   AT   +AG  
Sbjct: 237 RSDENIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMP 296

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G ++    + Y + ++ 
Sbjct: 297 MPVIQHLMGHESPATTQIYAELSEE 321


>gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
 gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVE 124
            ++  Y +      + + ++  +++     +I           +     +    ++    
Sbjct: 12  DVVKSYVRYLKLERNYSPHTLEAYQHDLSWLIGYCAQQDLNVFELKLADLERFAVQIH-- 69

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++  + L+ +R  +++ V   Y+A +P   +E P          +  ++   + 
Sbjct: 70  EHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLED 129

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                  EG + +   E L   GLR S+     +  L      ++   K      V +  
Sbjct: 130 SIDLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKERLVPISP 189

Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
             +K L +  I +    I          N     +  T   I  K +A  AG+ K+   H
Sbjct: 190 KAIKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGIRKTISPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    +    G +++   E YT 
Sbjct: 250 TLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTH 286


>gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4]
 gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 93/283 (32%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH 128
             +  +         L  N+  ++       +    +        +T   +   V   K 
Sbjct: 3   EYLDLFLNYLLVEKGLTKNTLEAYSRDLSVYLDFLAERKRTNPENVTALDVVEHVTRLKD 62

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P S  + L+++R+  ++ + + Y   NP   +E PK         +  +++   + 
Sbjct: 63  SGLAPRSRARALSAIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESLLAT 122

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTG 230
                    + R   E L  +GLR S+     ++ +  +   +                 
Sbjct: 123 AKGDGTFEVRDRAMLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLVPMGES 182

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               +      +++L       E  F++    KM+   F    K ++  AG+ K  S H 
Sbjct: 183 ARTAIGEYLAGIRILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIRKNISPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT    R RL
Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284


>gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
 gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D]
          Length = 307

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     +  +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AG++ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
 gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1]
 gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32]
          Length = 300

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 93/284 (32%), Gaps = 30/284 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE---SR 126
           LI  +         L+ N+  ++ +      R     G       T   +RS +     +
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEA-TAADVRSYLALRLEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S+ + L+S+R  + + +  + +A++P   +E PK         ++  + +  S  
Sbjct: 69  HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLSEP 128

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
           +       + +   E L  +GLR S+     ++ +      ++                 
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            T +   L     +LL                       F    K  A +AG+    S H
Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMM--TRQTFWHRIKLYALRAGIETALSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 247 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
 gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF
           2053A-b]
 gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B]
          Length = 307

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
 gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275]
          Length = 376

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 107/353 (30%), Gaps = 37/353 (10%)

Query: 15  RTRHGKIIYYFRKG---HGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             + G   +Y+  G    G+R ++      S    A                       +
Sbjct: 12  VRKRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDIS 71

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR--- 126
                 ++        L  ++  +++   ++  I+    +  + I  KHI++ ++     
Sbjct: 72  FAEAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYMALN 131

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSF 185
             + +     L ++  LF + +R E +  NPC  V  P +      +        +    
Sbjct: 132 GFSKNMVKNTLRTISSLFNFCIRAELIKDNPCDKVVLPSKLTQPERKVALTNKEVKRILN 191

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228
             + +   L+    LY+G+R  + C    +++                          + 
Sbjct: 192 RFKNTHWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVRENLTQDKGKKWIISTPKT 251

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKAT 278
             +I T+ +P   ++ L       ++  +  +                       +    
Sbjct: 252 KSSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRDNGSIITNDTLKYLSRVINY 311

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             G+  + H +R   AT+  + GA   ++    G  ++      Y    D +R
Sbjct: 312 DLGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVNNTDNMR 364


>gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str.
           'morsitans']
 gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 299

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           +I ++  S     +LA N+  S+      +           +       +   +      
Sbjct: 8   IIEQFLDSLWLERNLAENTLASYRLDLQALSAWLQSQQRDSLNASSADLQAFLADRLDHG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           +  +S+ + L++ R  F++  R++    +P   +  PK      +  ++  +        
Sbjct: 68  YKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQVGDLLAAPA 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR S+     +  +      ++          V L +  +
Sbjct: 128 IADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKERLVPLGEEAV 187

Query: 243 KLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +            +          N  +KM    F    K  A  AG++    S H +
Sbjct: 188 YWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGIDSERLSPHVL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATER 287


>gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016]
 gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
 gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD
 gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD
 gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6]
 gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
            + ++  +      LA N+  S+ +   ++++      +    I+   ++          
Sbjct: 14  YVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQD 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 74  YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 133

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 134 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 193

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 194 DWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVL 253

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 254 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 293


>gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
 gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 94/288 (32%), Gaps = 26/288 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125
               + +++        L+ NS  ++    ++++      D      KI  + +++ +  
Sbjct: 3   WNQALQDFQHYLRIERGLSDNSIKNYVWDVEKLVGFLDVNDMVISPIKIDKETVQAFIYE 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              T  P S  + ++ ++  F +   ++Y   NP   +E PK   +     +++++ Q  
Sbjct: 63  IAKTINPRSQARIISGLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLI 122

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP 238
                   EG + R   E L   GLR S+     +  L     F   T K      V + 
Sbjct: 123 DAIDLSKPEGERNRAMLETLYGCGLRVSELIGLKISDLFFEEDFIKVTGKGNKQRFVPIS 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285
           D   K + +                          ++         K  A K  + KS  
Sbjct: 183 DFNKKYINIYRKEIRVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDLGKSIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H  R   AT     GA    +    G +++   E Y    DR  L  
Sbjct: 243 PHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMH-VDRTHLAD 289


>gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
 gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M]
          Length = 322

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 26/294 (8%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               ++       + +      L+ N+  ++                  +          
Sbjct: 29  ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQTRGASLDIASEADLNA 84

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK   +SA + L+  R  + WAVR+    ++P L +   K+        ++  ++
Sbjct: 85  YSAARRKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVE 144

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                    +    + R   E +  SGLR ++        +  N   ++          +
Sbjct: 145 ALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 204

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+ N  + M   QF    K  A  AGV   
Sbjct: 205 PFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAP 264

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            S H +R   AT   + GA    +    G   +   + YT  A      +    
Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVH 318


>gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 392

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 105/384 (27%), Gaps = 56/384 (14%)

Query: 15  RTRHGKI-----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + + G+      + Y  KG+ ++                 AL     + +   S      
Sbjct: 13  KRKDGRWCGFITVGYDEKGNQKKKFFYGRTRQEVADKINQALN----EIKQGISITDNNI 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++ +        ++ ++   +ES     I    G +  + +  +H++     +  
Sbjct: 69  TLENWLNIWLHQYKKNQISESTFDDYESIIKNHINPVLGKYKLKDLRPEHLQMLYNEKHK 128

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S          +      A++   +  N   +   PK  +E        + Q+    
Sbjct: 129 AGLSTKRIKHIHVILHSALNQAIKNGLIVRNVSEATTLPKNTSEKEMKVLTVEEQKRFLQ 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239
             EG + + AF   L +G+R  +      + +      I  + +   I            
Sbjct: 189 VLEGERLKPAFVLALTTGMRLGEILALKWKDVDLENKKITIRNSVRRIKNRNEQSEIKTK 248

Query: 240 -----------------------------------GFMKLLAMTPIGKETFFINNDKQKM 264
                                                 +    + +     F       +
Sbjct: 249 TVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPI 308

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               F   F     KAG+N + H +R   AT   +A      +    G   +      Y+
Sbjct: 309 EPRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYS 368

Query: 324 KGA-DRIRLGIKNSRRISSVVDSD 346
               D  +  I+    +   + ++
Sbjct: 369 HVLFDTKQKAIEEIDNLMKNLTNE 392


>gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016]
          Length = 307

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 97/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
            + ++  +      LA N+  S+ +   ++++      +    I+   ++          
Sbjct: 16  YVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQD 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + L+++R LF++  R++  A +P   +  PK      +  ++E +        
Sbjct: 76  YKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPD 135

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 136 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 195

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 196 DWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVL 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 256 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 295


>gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5]
 gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like
 gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5]
          Length = 286

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 99/283 (34%), Gaps = 18/283 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              I E+         + N+   +  Y  +   + G     +       + ++ + ++  
Sbjct: 10  DDTIEEFATYLELEGKSRNTVRMYTYYISKFFEE-GHSPTAR-DALRFLAKLKRKGYSTR 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    + +++  FK+         +    ++ PK      +  T+E++++  +   E  +
Sbjct: 68  SLNLVIQALKAYFKFEG-----LDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA-ETLR 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245
            RL    L  +GLR S+ C   V+ +      I  +           I+  L     + L
Sbjct: 122 DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL 181

Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
                     F+   +++    +        K    KAGV  + H +R   AT   + G 
Sbjct: 182 ESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGI 241

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVD 344
               +    G   +   + YTK + +  +  +K ++ + S++ 
Sbjct: 242 DIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIG 284


>gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 294

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 99/288 (34%), Gaps = 18/288 (6%)

Query: 68  PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
             +L  L+  +     +  + + N+ +++     Q +      G      I    +R  +
Sbjct: 2   ADSLSSLVDGFLDQLRYRLNRSENTTVNYAVDLAQFVEFLQLEGVEGPEGINRDRVRGFL 61

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S       P+SA + L+S+R    +  R+  V  +P   V  PK      R     D+ 
Sbjct: 62  RSLMGYGFAPTSAARKLSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRALAYPDVV 121

Query: 181 QFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           +       G    + RL  E L  SGLR S++     + L+     ++   K      V 
Sbjct: 122 RLLEEGPGGRHAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
              G  +LL        T             ++            A + G+   + H +R
Sbjct: 182 FGRGVKELLQDWRPDPVTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGLAGVTPHTLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              AT   + GA+   +    G +++   + Y    +D+++   + + 
Sbjct: 242 HSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAH 289


>gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN
           2503V10-D]
          Length = 307

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
 gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           11V1-d]
 gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195]
          Length = 307

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     ++ +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 295

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 91/264 (34%), Gaps = 21/264 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRV 142
            LA NS  ++    +  I         +   + + + +   + + +   +  + ++ +  
Sbjct: 19  GLAENSVKAYHQDIENYIA-FTLKPLVECGAQELVAYMTHLRKSGASIETVQRRISGISR 77

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEF 198
            + + + ++ ++ NP   V +P +  +       ++    +         G + R+ FE 
Sbjct: 78  FYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDMSSGLGYRDRIIFET 137

Query: 199 LLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---- 253
           +  +G+R S+     V     +      T K      V +     + +      +     
Sbjct: 138 MYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLAEKMKTYLDIRHDSLV 197

Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                   F++ + +K++     +  K    +AG+ K  S H +R   AT     GA   
Sbjct: 198 KERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLRHSFATHLLTNGADLR 257

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   E YT+  D  
Sbjct: 258 TIQVLLGHVDLSTTERYTQVTDNK 281


>gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031]
          Length = 299

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285
                L                      F+N+  +++  T           K    V   
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str.
           Malish 7]
 gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD
 gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 306

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 35/286 (12%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH-- 128
            I+++ +      +L+ NS +S++                +  ITT++IR  +E      
Sbjct: 3   FIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASND 62

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + +++++  +++ + + + A NP L+V+ PK + +     +   ++       
Sbjct: 63  LQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCS 122

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIIT 234
                EG +       L  SGLR S+     +  +        +         K      
Sbjct: 123 QDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERV 182

Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281
           + + +       K L +  +        N             M    F+I  K+ A  AG
Sbjct: 183 IVINEQAVISIAKYLTIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAG 242

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 243 LNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
 gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1]
          Length = 318

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 97/314 (30%), Gaps = 27/314 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A   A     P+      P+ +   L   I           L+ N+  ++        R
Sbjct: 3   EALKKARKSQIPEDWPQPLPQSQDA-LDEFIDALLLED---GLSHNTLSAYRRDLTAAAR 58

Query: 105 KSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                   K+    + + ++            +S+ + LT +R  F WA+R++ +A +P 
Sbjct: 59  WLAQLQPPKVLDAALEADLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           + +   K+     +  T+E ++            G + R   E +  SGLR S+     +
Sbjct: 119 VRMLAAKQPPRTPKTLTQEQVEALLDAPDVETALGLRDRAMLELMYASGLRVSELVGVRM 178

Query: 215 QHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             L                 +          +E      +   +     E  F+      
Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAG 238

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M+   F +  K  A  AG+    S H +R   AT   + GA    +    G   +     
Sbjct: 239 MSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298

Query: 322 YTKGADRIRLGIKN 335
           YT  A      +  
Sbjct: 299 YTHVARERLKALHA 312


>gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
 gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200]
 gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785]
          Length = 307

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 103/302 (34%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123
             LI +++   ++  + + N+  S+ +  ++            G    +    +     +
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++  + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +  ++  I    K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 L                     F+NN  QK+         +    KAGV     
Sbjct: 186 KDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 310

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 96/279 (34%), Gaps = 26/279 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVES 125
               E+ +        +  ++ ++   F Q +      G  D+  I  + +R   S +  
Sbjct: 16  QWFDEFSQYLIVERGYSEKTQAAYAEDFFQFLDFLEQSGSRDFLAIDYRDVRIYLSFLND 75

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           ++++ +S  + + S+R  +++ +++  +  NP   V   K+  +  R + ++++QQ    
Sbjct: 76  QEYSRNSISRKVASLRSFYQYLLKRMVLTENPFAYVHLKKKNQKLPRFFYEDELQQLFDS 135

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------IKTQK 228
                    +     E L   GLR S+     +  +                      + 
Sbjct: 136 VKGTEPLEQRNLALLEILYGCGLRVSECAAITLTSIDWEHQILLVYGKGSKERIVPFNEH 195

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
               ++  + +G  +LL       +  F+N+    + AT           ++ ++     
Sbjct: 196 ANKAMSHYIQNGRKELLTQFKKEHDYLFVNHLGSPVTATGIEYILNQLLKRSQLDSEIHP 255

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + Y   
Sbjct: 256 HKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 294


>gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
 gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125
            K  I EY+        L+ N+  S+    +++               I +  I+  +  
Sbjct: 3   WKHAIKEYQMYLKIERGLSKNTVDSYTKDIEKLCLFFCKNKITISPININSDLIKQFIYD 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P S  + ++ +R  F + + +EY  +NP   +E PK   +     +++D+    
Sbjct: 63  IAKQINPRSQARIISGLRSFFDYLIFEEYRVLNPTDLLETPKIGKKLPDTLSQDDIDALF 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
           S       +G + R   E +   GLR S+     V  L      I+   K      V + 
Sbjct: 123 SAIDLSHPQGERNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIRVLGKGNKERYVPIH 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK--S 285
                 +++      T        +                  I  K  A K  + K  S
Sbjct: 183 KDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIILKDLAFKIDLKKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT     GA    +    G +++   E Y   
Sbjct: 243 PHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHV 282


>gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139]
 gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2]
 gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3]
 gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4]
 gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2]
 gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1]
          Length = 306

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
           + +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    V  +    +    R     +  T + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284
               K +    I     +            N   ++++        +     AG++    
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 292

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 16/276 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR---KH 128
           I  + +       + ++ I++     Q             + IT  H+R  + S      
Sbjct: 2   IDSFLEYLKSLGRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYGF 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +SA++ ++S+R    +      +  +P   V+ P+      R  +  D+ +       
Sbjct: 62  AKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGPS 121

Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
           G    + RL  E L  SGLR S+ C      +      I+          V        +
Sbjct: 122 GREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQDM 181

Query: 245 LAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           L             F      +++            A + G+   S H +R   AT   +
Sbjct: 182 LRRWGEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFGVSPHTLRHSFATHLLE 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
            GA+   +    G +++   + Y    A+R+R   +
Sbjct: 242 GGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQ 277


>gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2]
 gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1]
 gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3]
 gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08]
          Length = 306

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSG 122
           T+     +Y +       L+ N+  ++     +  +     G     ++T   +   R  
Sbjct: 4   TVGGQAEDYLRHLVVERGLSDNTVQAYRRDLLRYQKYLDSRGIRSLAEVTRVDVEEFRRY 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++     P+S  + + ++R L  +AV       +    +    R     +  T E ++  
Sbjct: 64  LDQLGLAPASVTRCVVAVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEAL 123

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTII 233
            +       EG +     E L  +G R S+ C   V  ++  +           K     
Sbjct: 124 LAAPDTSTVEGLRDTALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKER 183

Query: 234 TVELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGV 282
            V L     + +    +     +                ++++        +     AG+
Sbjct: 184 IVPLGSYAAQAVDAWLVRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRRAGEAAGL 243

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYT 287


>gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5]
 gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5]
          Length = 306

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 35/286 (12%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH-- 128
            I+++ +      +L+ NS +S++                +  ITT++IR  +E      
Sbjct: 3   FIAQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASND 62

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + +++++  +++ + + + A NP L+V+ PK + +     +   ++       
Sbjct: 63  LQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCS 122

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIIT 234
                EG +       L  SGLR S+     +  +        +         K      
Sbjct: 123 QDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERV 182

Query: 235 VELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281
           + + +       K LA+  +        N             M    F+I  K+ A  AG
Sbjct: 183 IVINEQAVISIAKYLAIRGVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAG 242

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +N    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 243 LNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
 gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102]
          Length = 299

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLEVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285
                L                      F+N+  +++  T           K    V   
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200]
          Length = 300

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 30/284 (10%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE---SR 126
           LI  +         L+ N+  ++ +      R     G       T   +RS +     +
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEA-TAADVRSYLALRLEQ 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S+ + L+S+R  + + +  + +A++P   +E PK         ++  + +  +  
Sbjct: 69  HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLAEP 128

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229
           +       + +   E L  +GLR S+     ++ +      ++                 
Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
            T +   L     +LL                       F    K  A +AG+    S H
Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMM--TRQTFWHRIKLYALRAGIETALSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 247 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARL 289


>gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 300

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 74  LISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
           LI  +         ++ N+  S+     Q  +   D        RK   +   +    RK
Sbjct: 10  LIDAFLDGIWMERGVSENTLSSYRQDLMQFNQWLLDQQTTMLAVRKNDIEAYLAFRLMRK 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+ +R  +++ +R+  ++++P L ++ PK      +  +++D++   +   
Sbjct: 70  ISARSTARLLSCLRGFYQYQLRESRISLDPTLDIDSPKMGRPLPKSLSEQDVEALLNAPD 129

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  SGLR ++     V  L  N   ++          V   +  +
Sbjct: 130 TDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERLVPTGEEAL 189

Query: 243 KLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
             L                 +T F +     M    F    K  A +AG+    S H +R
Sbjct: 190 DWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQSLSPHTLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 250 HAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER 288


>gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM
           15897]
          Length = 310

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 27/278 (9%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTP 130
            +     +  + +V +  S+E      +   G      +++    I++ +     +  + 
Sbjct: 6   AFLHYLKYQKNYSVLTLQSYERELTDFLLFIGKESISLQEVDYYVIQNYLIYLNEKHLSH 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
           ++   +L+S+R  FK+  +Q  V  NP   V   K  +        ++M  +        
Sbjct: 66  TTINHYLSSLRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEMMGYLDSIDTHT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
           S G + +   E +  SGLR S+     +  +  N   I+   K      V   D   K L
Sbjct: 126 SLGVRNKALLELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKGSKEREVPFHDYAKKWL 185

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------------NKSAHGVR 290
                      +N   +  +    +   K    + GV                   H +R
Sbjct: 186 LQYINDDRISIMNEYHEAHDYVFVNRRGKKLTNR-GVENIIDRTMYLYDPLRKIHPHTIR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AT   DAG     +    G  ++   + YT  +  
Sbjct: 245 HSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQE 282


>gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
 gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483]
          Length = 319

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 105/297 (35%), Gaps = 25/297 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +   ++I        G  D      +H  +G+    
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLYKLINFLEQEKVGILDVCLSDLQHFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ + ++Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +  F     K      V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGV 289
             + +    +    +    +             +        K  A KAG+ K  S H  
Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 376

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 109/348 (31%), Gaps = 34/348 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I               + +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGKRKQITKGGFKTKKAAQEEAARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-TS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ +  D     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFADKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT +   +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIDQAMKFMEYAKIKGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +        +  +  +I  Q+T                    +     +   +LL
Sbjct: 198 GMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEASNRVIPMTEELMEELL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 KE  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 DYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           GA A  +    G   V      YT   +  +  I+ + ++ +V+ S  
Sbjct: 318 GANAKVVAKLLGHTNVSTTLNIYTDTYEERQ--IEATEKLGNVLKSGR 363


>gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
 gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501]
          Length = 300

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 26/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
            +  I++Y         L+ NS  S+     ++     +       + I  K I + +  
Sbjct: 3   WEEAITDYLHYLRLERGLSENSVRSYRRDVRKLAGYLAENEPGITPKSIDRKDIEAFIHH 62

Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181
                   S  + ++ ++  F + + + Y   NP   +E PK   +     + E++ +  
Sbjct: 63  VGTDLKARSQARLISGLKGFFGYLIFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEIDRLV 122

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
                   EG +     E L   GLR S+     +  L  +  F   T K      V + 
Sbjct: 123 AEIDRSAPEGERNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKVTGKGSKDRFVPIG 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--S 285
               + +                 +            +        +  A +AG+ K  S
Sbjct: 183 PYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLRKNVS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H  R   AT     GA    +    G +++   E Y    DR  L 
Sbjct: 243 PHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMH-VDRTHLA 288


>gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 383

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 100/328 (30%), Gaps = 17/328 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64
                G+ +Y      G R+R         P  +           A   S          
Sbjct: 32  RVWPSGRKVYVIHYRSGGRMRRYTIGQHGSPWTADLAREEAIKVLARVHSGENPADARLE 91

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123
            +K  T++   + +        L   ++  ++   D  I  K G +    I+   +    
Sbjct: 92  DRKAMTVREFSNRFLDEYVDVHLKPTTQSEYKRAVDLFIVPKFGTWRMADISRADVSGFH 151

Query: 124 ESRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +  P  A + L  +  +F     W +R + +     +   + +++   +       +
Sbjct: 152 GDLRQIPYQANRTLGVLSKMFSLADLWGIRTDGLNPCRGVQRYKEEKRERYLTQEEYARL 211

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237
               +   +  +   A   L+ +G R  +       H+  +   ++    KTG  I    
Sbjct: 212 GATLNEAEDMPEAVWAIRLLILTGCRLREIQTLQWSHVFFDQSELRLPDSKTGAKIVQIG 271

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                 + A+T +    + I   K+    T     ++     AG++    H +R   A+ 
Sbjct: 272 QAAINVIKAITRLEDNPYVITGRKKGGYLTDLQKPWRRIRKAAGLDDVRIHDLRHSFASD 331

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
           + + GA    +    G   +     Y  
Sbjct: 332 ALEMGADLTMIGHMLGHSDIKTTARYAH 359


>gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
 gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN]
          Length = 312

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 29/282 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGV 123
           L  + + Y        LA  +   +E+      +         G    ++   +   + +
Sbjct: 9   LANVFAIYLT--GERQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQDIQAYLTHL 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +   ++  + L S+R  + + +    V  NP   V          R + + +M    
Sbjct: 67  NDLRRQWTTINRELASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEMNALF 126

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                       + R   E L  +G+R S+     ++ +  ++  I    K      V  
Sbjct: 127 KAADGDGRPLDFRNRAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPF 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDK------------QKMNATQFSIWFKAKATK--AGVN 283
                  L           ++               + + +            K    ++
Sbjct: 187 GHYAKVALERYLHECREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIH 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 247 IHPHMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHV 288


>gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 301

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 99/283 (34%), Gaps = 26/283 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSG 122
             T +  I ++R       SL+ NS  ++    +++         D +   +  +H+R  
Sbjct: 2   TKTWENHIKQFRHYLKLERSLSENSIEAYTRDVEKLAAYSSKNFPDKNPLNLELEHLRKF 61

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           V        +  +  + ++ ++  +++ + ++ +  +P   +E PK   +     + +++
Sbjct: 62  VNELAQLEISDYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEI 121

Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            Q          EG + R   E L  SGLR S+        +  +I  ++          
Sbjct: 122 VQLLEAIPLGEPEGHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERL 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN 283
           V +    +K L +                          K++     +  K  A  AG+ 
Sbjct: 182 VPIGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIE 241

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 KNISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 284


>gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes
           KPA171202]
 gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202]
 gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187]
 gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165]
 gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137]
 gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1]
 gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1]
 gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2]
 gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2]
 gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1]
 gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1]
 gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1]
 gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2]
 gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1]
 gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2]
 gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1]
 gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2]
 gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1]
 gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1]
 gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1]
 gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4]
 gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1]
 gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3]
 gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3]
 gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1]
 gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1]
 gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1]
 gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2]
 gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1]
 gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1]
 gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1]
 gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1]
 gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2]
 gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1]
 gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2]
 gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3]
 gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2]
 gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1]
 gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3]
 gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1]
 gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1]
 gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2]
 gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1]
 gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1]
 gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2]
 gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3]
 gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1]
 gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2]
 gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1]
 gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2]
 gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2]
 gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3]
 gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2]
 gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1]
 gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2]
 gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1]
 gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1]
 gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1]
          Length = 306

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
             +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    +  +    +    R     +  + + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284
               K +    I     +            N   ++++        +     AG++    
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium]
          Length = 323

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 28/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------G 122
               I  Y+        L+ NS  ++    +++++     D + I+  +I          
Sbjct: 28  WPQAIIHYQNYLKIERGLSENSIANYTFDINKLVKWMVINDIK-ISPINIEKETLQEFIY 86

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +++  P S  + ++ ++  F + V +EY   NP   +E PK   +     + E++   
Sbjct: 87  TIAKELNPRSQSRIISGLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAI 146

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL 237
            S        G + R   E L   GLR S+     +  L  +  F   T K      V +
Sbjct: 147 ISTIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPI 206

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-- 284
               +K + +         +     +                     K    KAG++K  
Sbjct: 207 GSLTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKI 266

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H  R   AT   + GA    +    G +++   E YT   D+  L
Sbjct: 267 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTH-IDKSHL 312


>gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 323

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 93/262 (35%), Gaps = 24/262 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
             L+  +R S+     Q I         DYR++T   I    + ++     P++  +   
Sbjct: 16  RGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYLKDLGKAPATIQRVSV 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  F++ +++  +  +P + +E PK + +  +  T E+ ++        +    + + 
Sbjct: 76  TLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEAPKPDTPLGLRDKA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R S+        +   +  ++   + G    +       + L +      
Sbjct: 136 MLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFGGVTAEWLDLYLREGR 195

Query: 254 TF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           +            F N    +++   F    K    +AG+  + + H +R   A    + 
Sbjct: 196 SHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDITPHTLRHSFAVHLLER 255

Query: 301 GATAHELMATYGWKTVDQAETY 322
           GA    +    G       + Y
Sbjct: 256 GADVRSVQELLGHSDASTIQMY 277


>gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
 gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162]
          Length = 324

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 86/288 (29%), Gaps = 35/288 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L   +  Y          A N+  S+    D+        G  D   +T+  +   + + 
Sbjct: 17  LDEALRAYLDHLTVERGAAANTLSSYRRDLDRYREYLVELGIDDLASVTSTQVSGFLVAL 76

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +           SSA + L ++R L ++A  +   A +    V  P       +  + + 
Sbjct: 77  REGSDGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDT 136

Query: 179 MQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           +                   + R   E L   G R S+     V  +     S+    K 
Sbjct: 137 VIALLEAAGGDGESDTPSRLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGKG 196

Query: 230 GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           G    V +    +  +                   F+N    +++           A +A
Sbjct: 197 GKQRVVPIGRPALAAIEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAERA 256

Query: 281 GVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           G++      S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 257 GIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 304


>gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 102/297 (34%), Gaps = 36/297 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             I ++ +      +L+ NS +S++                +  ITT++IR  +E     
Sbjct: 2   EFIEQFLEMLLAERALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
                S  + +++++  + + + + + A NP L+V+ PK + +     + + +       
Sbjct: 62  NLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYC 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTII 233
            K    EG +       L  SGLR S+     +  +  N               K     
Sbjct: 122 SKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKA 280
            + + D  +  +      ++ F      +              M    F+I  K+ A   
Sbjct: 182 VIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDI 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           G+N    S H +R   A+   + GA    +    G   +   + YT    + ++  +
Sbjct: 242 GLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQAL 298


>gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
 gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1]
          Length = 298

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 97/295 (32%), Gaps = 26/295 (8%)

Query: 71  LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESR 126
            +  +S Y +      L + ++  ++           G+   ++IT   ++       ++
Sbjct: 6   FRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIGLQQITRLQVQDWLVVGHAK 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
               ++  + L+++  L   AV+      N    V  PK+     R    E         
Sbjct: 66  GLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAALMQPT 125

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
             S   +       +  +GLR S++    +  +  +   ++   K      V LP     
Sbjct: 126 HASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLPTTAAD 185

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFS 293
           LL              +   F+N   Q++ A       K +A ++G  ++ + H +R   
Sbjct: 186 LLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHRLRHSF 245

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT     G     +    G  ++   E YT           +  +++ V D   P
Sbjct: 246 ATHLLAGGVDLRAIQELLGHASLATTERYTHL---------DIAKLTEVYDRSHP 291


>gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 300

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 102/294 (34%), Gaps = 28/294 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG 122
           +     + +      + +  +  S+    + ++    +         +   +  +   + 
Sbjct: 2   RAAADRFLRYLRVERNASDLTIKSYGEDLEALVDYLEELYAAPASTGEVSTLDLRGYVAA 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           V    +  ++  + L SMR  F++A R+E +  +P   +  P+RK +     T +++ + 
Sbjct: 62  VSDAGYAETTVSRRLASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKL 121

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL 237
            S     +    + R  FE    +GLR S+        +      I+ +  G       L
Sbjct: 122 LSAPPANTSAGLRDRAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLGPL 181

Query: 238 PDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
               +K L      +           +  F N    ++         +     AG++   
Sbjct: 182 GSYAIKALHDWLSQRTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDTRT 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           S H +R   AT   DAGA    +    G K++   + YT  +  R++   + + 
Sbjct: 242 SPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAH 295


>gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
 gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15]
          Length = 294

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 102/269 (37%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             ++ N+  ++ +  +Q +      G     ++T  HI   +ES    + + ++  +  +
Sbjct: 16  RQMSANTAAAYRNDLNQYLTTLEQQGISSAEEVTRHHIVLHIESLLQAQKSRATVRRSTS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R   ++ V ++ V  +P   ++ PK   +    W++ D+ +             +   
Sbjct: 76  SIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLLDSVVGNDPLVRRDAA 135

Query: 195 AFEFLLYSGLRCSDSCR----------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             E L  +G+R S+  +            +  L     +     + T I        +  
Sbjct: 136 MLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTRIIPISQTAIDSVSVYLELAR 195

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            ++     +  F+N+   +++   F    K +A +AG+ K  + H +R   AT   + GA
Sbjct: 196 NSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEKDITPHVLRHSFATHLLENGA 255

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT   ++ RL
Sbjct: 256 DLRVVQEMLGHADLSTTQMYTH-VNKARL 283


>gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           R]
 gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 315

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 101/310 (32%), Gaps = 18/310 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII 103
            +   A            S    P+ L  LI ++ +        +  +   + S    + 
Sbjct: 3   ESKKKAARSGRNAPPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMA 62

Query: 104 RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               D D   + T +           + ++  +   S++    WA +  ++  +    + 
Sbjct: 63  DTIEDIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLI 122

Query: 163 RPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            PK   +  +   ++    F      +   E  +     E L  +G+R ++ C   +  +
Sbjct: 123 SPKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLPDI 182

Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQF 269
             +   ++   K      V   +   K L      ++    +          Q++NA Q 
Sbjct: 183 DYDRKMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMAEDPKALFVGVRGQRINARQV 242

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++
Sbjct: 243 RRIVDRVAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNK 302

Query: 329 IRLGIKNSRR 338
             L  +   +
Sbjct: 303 RLL--EAFNK 310


>gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC
 gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 30/299 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFD----YRKITTKHIRSGVESR 126
           L  +Y         +  +  ++    D   +     GD        +       S +  R
Sbjct: 6   LFKQYLT--VERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLFDR 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + ++++R  +++ V+ + V  NP   V+  K+  +    + +++M       
Sbjct: 64  HLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEAV 123

Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
            +       +     E L  +G+R S+        +  ++ +I    K      V     
Sbjct: 124 YQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFGRY 183

Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L      +               FIN+  + +  T          T + +      
Sbjct: 184 AKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R   AT   + GA    +    G  ++   + YT    + +L     +      D+
Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVT-KEKLQESYRKYFPRSTDA 301


>gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5]
          Length = 300

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 25/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE--SRKHTPSSAIQFLT 138
             L+ N+  ++     ++ R     D       IT   I+  +   +++    S  + ++
Sbjct: 18  RGLSENTIDNYARDLKKLTRHLEQLDSAPDPITITKDDIQDFIYTIAKEVQARSQARIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F + + ++Y   NP   +E P+   +      +E++    +       +G + R 
Sbjct: 78  GLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALITAIDLSNPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L   GLR ++     +  L     F     K      V + +   K + +      
Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRFVPISEHTQKYINIYRNEIR 197

Query: 254 TFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
           T      +            ++         K  A KAG+ KS   H  R   AT     
Sbjct: 198 THTDVKPEYVDILFLNRRGRQLTRAMIFTIIKDLAVKAGIKKSISPHTFRHSFATHLLQN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           GA    +    G +++   E Y    DR  L 
Sbjct: 258 GADLRSIQQMLGHESITTTEIYMH-VDRSDLA 288


>gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601]
 gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601]
          Length = 335

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 124/346 (35%), Gaps = 16/346 (4%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LP +V  +  R    +Y+ R G  +RI    P    F   Y   + G          
Sbjct: 2   KRNLPAYVYAKGKRG--YLYFIRSGVCQRIH-SEPGTPEFAADYAILMRG---------R 49

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                  +  LI  + +S  W + A N+R  +E +   +   +G+ D  K+ T H+    
Sbjct: 50  VVAPKRNIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMR 109

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++    P+ A + + ++  L  + ++  ++  NP   VER K      +PW  + +  F+
Sbjct: 110 DALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFR 169

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  +  L FE LL +G R +D        +  + F +   KT   + + L D    
Sbjct: 170 --AEADGRTLLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRA 227

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-G 301
           +LA           + D  K++             K G +    H +R  +A+  A   G
Sbjct: 228 VLASQRRRGMFIICHEDGTKISYQLAHKDVMTVRKKIGADEYDIHALRYAAASEIAAIPG 287

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            T   + A  G         Y   A +     +  +  +   ++  
Sbjct: 288 MTRDHIQAITGHADAAMIRRYAGAAVQKIRATEAQKARADRTNTKR 333


>gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 25/278 (8%)

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124
           L+  I +Y + S     L+VN+  ++    ++ +      +               +   
Sbjct: 6   LEDQIDDYLRYSQIERGLSVNTINAYRQDLEEYLTFVKKENMTSWPTEATDVDAFLARQH 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++S+R  ++W  RQ    +NP L ++ PK++ +     T++++     
Sbjct: 66  DLNKATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLD 125

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
             +     G + +   E L  +G+R S+     +Q L  ++  ++   K      + +  
Sbjct: 126 QPNTKQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISS 185

Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             +  L                   E  F+NN  +++         K     AG+  + +
Sbjct: 186 VALDWLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGIAKDVT 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H +R   AT   + GA    +    G   +   + YT
Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283


>gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 102/323 (31%), Gaps = 17/323 (5%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY     G++  L    +        + L     K + I     K   L   I EY +  
Sbjct: 11  YYVEFERGKKRSL-KTKDKALAQRLFNQLKREYLKGKIILLSEGKKIKLSEFIEEYLEWC 69

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
              + +  +         ++   +GD   + +T KH+   V +      + ++    + +
Sbjct: 70  R-ENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLLAQGISRTTINIHIRT 128

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++     AV  EYV  +P    ++ K      R    ED+ + +    +     +   F+
Sbjct: 129 IKSALTKAVEWEYVQNHPLEGYKQLKVHQTPPRFLLPEDIAKVEKVIDDEFWLFVFRLFV 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             +G+R  +  +   +H+  N   IK    KT     + +       L            
Sbjct: 189 Y-TGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQSRVIPIHPKLRAELEARTPAMGKVV- 246

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                           K    KAG  +   H +R   A++   AG     +    G ++ 
Sbjct: 247 -----PYAKPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLGHQSY 301

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
              E Y   + +     +  ++ 
Sbjct: 302 RTTEIYAHLSPQH--LHEAIKKF 322


>gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
 gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC
           23834]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 27/294 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDY 111
           + P       P ++  TL  L   +        LA N+   +    +++ R+      D+
Sbjct: 5   AEPLPAAWQEPIEQ--TLDEL---FLT----RRLAANTLAGYRRDLEKVARRLHAQGLDW 55

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++     + + V +    P+S ++ L++++ L+ +   Q   + NP   +  P++     
Sbjct: 56  QQADADALANAVYAPDEKPASQVRALSAVKQLYGFLQLQNRRSDNPAQHLRPPRQGRALP 115

Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226
               +  +    +        G + +   E L  +GLR S++ +  +Q L          
Sbjct: 116 PLIGEAQIDALLAAPDTETIFGLRDKAVLETLYATGLRVSEAAQMQLQDLDLQRGVVTVI 175

Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276
            K      V L    +  L                 +  F+   +  ++        K  
Sbjct: 176 GKGNKQRIVPLGAEAVYWLERYLKTARGELLKHTPCDFVFVGQKRSGISRQLVWQMVKRY 235

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A +AG+   S HG+R   AT   + GA    +    G  +++  + YT  A+  
Sbjct: 236 AAEAGISELSPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANER 289


>gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 11/258 (4%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           +      + +V ++ ++  +  ++++         I    I+  +        SA     
Sbjct: 79  KNELKIRNYSVKTQKAYLGHVRRLLQ-FHKKCIDNIDKDDIKLYLLRLVDANKSAAYIDQ 137

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++   FK+         +    ++RPKR+ +        ++ +      +  + R     
Sbjct: 138 AVSA-FKFLYIDLKNIDDVDFDIKRPKREQKLPSVLNTNEVFKIIESV-DNLKHRAIIML 195

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           +  +GLR S++    ++ + +      IK  K        L +  ++LL           
Sbjct: 196 IYSAGLRVSEAANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKIYRPEC 255

Query: 257 I----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
                 N ++ +        F+  A KAGV K  S H +R   AT   + G     +   
Sbjct: 256 WLFEGQNGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQEL 315

Query: 311 YGWKTVDQAETYTKGADR 328
            G  +    E YT  ++R
Sbjct: 316 LGHASPSTTEIYTHVSER 333


>gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 97/333 (29%), Gaps = 15/333 (4%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M     +   + +     G     F    G+RIR     ++     Y    T S      
Sbjct: 1   MARKDGINRGIREIPLGSGIWWVDF-WHEGKRIRKKVGPKAQARAVYERLKTESRLGTLV 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               RK       L  +Y     +  L    +          +   GD     +    + 
Sbjct: 60  PKPVRKHEPLFGELAEQYI---RYADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVE 116

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +E      + P++  + L  ++ ++  AV+ E +  NP   V  PK     +R  T +
Sbjct: 117 EVMEKMNKEGYKPATIARCLVVLKAVYNRAVKNEIIERNPIARVFAPKFDNSLVRYLTTD 176

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTI 232
             ++      E  +        L++G R  +  +   + +        +   K+  +  +
Sbjct: 177 QEERLFEALPE--RLHPIVTVALHTGCRQGELLKLVWEDVDFNAGTIFLRDTKSGDSRRV 234

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
           +        +  L          F +     M        F     KAG+     H +R 
Sbjct: 235 LMNSKVQEVLLALPGRDTPGAPVFTDTLGGPMEGRNLRRDFDRAIKKAGLAPFRFHDLRH 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+  A  GA    L    G K+      Y  
Sbjct: 295 TFASRLAMMGANDRTLQTLLGHKSQRMILRYAH 327


>gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 291

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 24/279 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPS 131
           Y  S     LA N+  ++                   +  H+++ ++         +  +
Sbjct: 11  YLASE--KGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQHYASA 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187
           S  + L +++VLF++  R+  +  N  L +E PK         + E++ +          
Sbjct: 69  SICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPNIQTW 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            G++ +   E L   GLR S+ C+  +  + +        K G    V +    +  +  
Sbjct: 129 RGARDKAILETLYACGLRVSELCQLKIYDVDDTFVR-VLGKGGKERIVPIGQQAIAAIDG 187

Query: 248 T--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                        E  FI    + +         K  A +A +  + S H  R   AT  
Sbjct: 188 YLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHTFRHTFATHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335
            D GA    +    G  +++  + YT  +  R++   + 
Sbjct: 248 LDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQA 286


>gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
 gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem]
          Length = 292

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 95/267 (35%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
              A N+  ++    ++ +   G+ +   I    +   +   K     P S  + L+++R
Sbjct: 16  KGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVTGFLAKLKGEGIAPRSRARALSALR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197
           +L ++ +R+ Y  +NP   +E PK   +     +  +++          ++  + +   E
Sbjct: 76  MLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTGAQELRDKAMLE 135

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            L  +GLR S+     +  +  +    +   K      V + +       +         
Sbjct: 136 LLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESACHATGVYLQQARGEL 195

Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
                    F++     M+   F    K +A +AGV    S H +R   AT   + GA  
Sbjct: 196 LKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISPHTLRHSFATHLLENGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R R+
Sbjct: 256 RSVQIMLGHADLSSTQIYTHVT-RERM 281


>gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 311

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 97/293 (33%), Gaps = 22/293 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITT 116
            +  P   P  +  L   YR       + + ++  ++              + D   +  
Sbjct: 7   EVQIPEHFPQVMADLFRSYRTYLKIEKNYSEHTLFAYLRDLKFFFEFCLKEEIDILSVDV 66

Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +R+     K +      +  + L+S+R  +K+  R+E +  NP L V  PK K    +
Sbjct: 67  LDVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPK 126

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IK 225
            +T  + +    +         G + +   E L  +GLR  +   A +  L   + S   
Sbjct: 127 NFTPIETEDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKV 186

Query: 226 TQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             K      V +       L          G E  F+N    K+           + +  
Sbjct: 187 MGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVM 246

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ K  + H  R   AT   +AGA    +    G  ++   + Y     R RL
Sbjct: 247 GMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYL-SVSRDRL 298


>gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5]
 gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5]
          Length = 306

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                +  ITT++IR  +E     
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITTENIRDWIEYLASN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +K+ + + + A NP L+V+ PK + +     + + ++      
Sbjct: 62  DLQARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SG R S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  +        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           G+   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288


>gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99]
 gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99]
          Length = 308

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 36/300 (12%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP 130
           LI  +         L+ N+  ++ +      R          +++ + IR  ++ R    
Sbjct: 18  LIDTFLDDLWSNRGLSDNTLAAYRTDLRHFDRYMQKLGGGLVQVSQQLIRDYLDVRFDKG 77

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
              +S+ + ++S+R  + + + ++ + ++P   ++ PK   +     ++ D+    +   
Sbjct: 78  FARTSSARLMSSLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADVDILLNEPD 137

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------G 230
                  + R   E L  +GLR ++     ++ L      ++                  
Sbjct: 138 LQEPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGEIAV 197

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +   L     +LL                       F    K  A +AG+  + S H 
Sbjct: 198 NEVEHYLEGARAELLKGKLSDVLFPSRRGQMM--TRQTFWHRIKLYALRAGIVTHISPHT 255

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G   +   + YT  A           R+S +     P
Sbjct: 256 MRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAK---------ARLSQLHSEHHP 306


>gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 300

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 23/280 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132
           ++++ +S    + +V++  ++ +  ++     G   +  I    IR  +        S  
Sbjct: 10  VAQFLRSLKEKNSSVHTIKAYTTDLEEFSAFLGPAKWDDIDHVRIRGFLSHLYDKGLSKP 69

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
              + L ++R L+KW  R+ +V  NP   V  PK   +  R  T E++          + 
Sbjct: 70  SVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMPEAA 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +  L FE L   G+R S+     +  ++ +  +I  +  G             + A
Sbjct: 130 SFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAAVAA 189

Query: 247 MTPIGKETFFINNDK-------------QKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
              + K    +                 Q++ +       K  A   G+      H +R 
Sbjct: 190 KVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPADVHPHTLRH 249

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              T   + GA    +    G + +   + YT+ + R  L
Sbjct: 250 AFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVL 289


>gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB]
 gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB]
          Length = 301

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 92/283 (32%), Gaps = 21/283 (7%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES 125
           TL   +  + +       L+  ++ S+      ++  + +       ++    +RS    
Sbjct: 4   TLLEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIADEMKLSSWAQLEPAQVRSMAAR 63

Query: 126 RKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +    SA      L+++R    W V Q  ++ NP   V  P++     +    +++ Q 
Sbjct: 64  SRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQL 123

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                +     + R   E +   GLR S+      +H+  ++       K      V + 
Sbjct: 124 LEIDLDDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIG 183

Query: 239 DGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              +  +      +ETF   +          +++       F     + G+  +   H +
Sbjct: 184 RTAVTWIQHWLPLRETFGAQDDALFLSTRGNRISPRNVQKRFAEWGIRQGLASHIHPHKL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 244 RHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285


>gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
 gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4]
          Length = 307

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 109/302 (36%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDF-DYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +      Q  +++G F  + K+ ++ +   ++S 
Sbjct: 6   DKLIEQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGSWDKVKSRDVEIFLQSL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +   +  I    K      V   
Sbjct: 126 DSLVGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 L                     F+NN  QK+         +    KAGV     
Sbjct: 186 KDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
 gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028]
          Length = 292

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP- 130
           I  Y +       LA  +  ++ S          +      +I    +   +   +    
Sbjct: 5   IDAYLQHLTVIRGLAEKTVEAYGSDLLFFRDFLSELGGSLHQIDEHTLFLYMVHLRRKGL 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++S+R  F++ V++ ++A +P   ++ PK   +     +++++       + 
Sbjct: 65  KNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVTALLDRPAL 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSC---------RAGVQHLQNNIFSIKTQKTGTIITV 235
            +    + R   E L   GLR S+           +AG+  +       +          
Sbjct: 125 NTPLGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGSKERYVPLHDSAVS 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +     +   +     +T F+N     ++        +  A +AG+    S H +R   
Sbjct: 185 FMLSFLRQWRPLFGPKTDTVFLNRSGLGLSRQGVWKLLRRYALEAGITRPVSPHTLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   + GA    +    G   +   E YT       + +
Sbjct: 245 ATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVAL 284


>gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
 gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243]
          Length = 297

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 76/279 (27%), Gaps = 25/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127
             L  EY          +  +  ++ +      Q + K G      +  + I +      
Sbjct: 2   DELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLF 61

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+  + ++ ++   ++ VR+ Y   NP  +++ PK         +   +    S
Sbjct: 62  GRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLS 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239
                     + R   E L   GLR S+         +    +     K        +  
Sbjct: 122 RPLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISG 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSA 286
             ++ L           + +  +            ++                GV N   
Sbjct: 182 AALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT     GA    +    G   +   + YT  
Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHV 280


>gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1]
          Length = 306

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
           + +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   VEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    V  +    +    R     +  T + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVN---K 284
               K +    I     +            N   ++++        +     AG++    
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287


>gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 92/281 (32%), Gaps = 24/281 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIR 120
             +LK  +  Y + A  GSL  ++  ++    +  I                    ++  
Sbjct: 4   KKSLKSFLD-YIRLARTGSL--HTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFT 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  +    + SS  + L+S+R  F++    E +  NP  S +  K         T + +Q
Sbjct: 61  TLRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQ 120

Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITV 235
                +      G + R   E L   GLR S+     +Q +    + ++   K      V
Sbjct: 121 DLLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIV 180

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGVNK--SA 286
                   LL        +F   +D          ++     +  + K  +  +      
Sbjct: 181 PFYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   AT   D GA    + +  G + +   + YT  + 
Sbjct: 241 HVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ 281


>gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
 gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1039]
          Length = 378

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 103/359 (28%), Gaps = 43/359 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  +  YYF      G R ++      T   A  +     +   E         T +K
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + +     +L  N+  ++       I    G      ++   +++ + +      
Sbjct: 66  QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           S        + ++     AV    +     +   +  +  E        +  + ED    
Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226
                EG    +      Y+G+R  + C     ++  +                      
Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNGGAWVYGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
           + + +  T+ +    + +L      +    +   K  +                +     
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWN 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +  +    ++ + H +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364


>gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 306

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              + N+  S+ S          D     +  + +     +      +  SS  + L ++
Sbjct: 24  RGYSENTVNSYRSDIKSFFNFFKDRINDTVDIEKLLLYYSNYLISNNYKASSLERKLVAI 83

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
           +    ++ ++ Y        +  PK+        ++ D+    +F S       +  L F
Sbjct: 84  KQFLIFSFQEGY-YKGKIPDIVLPKKDKRLPFFLSRSDIFNIFNFISNSKQFTIRDLLIF 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------- 248
           + L ++G+R S+     + ++      I+   K      +      + L           
Sbjct: 143 KMLYFTGMRISELLNLKIDNVNFESMDIRVLGKGSKERIIPFHRDILDLFNSYLIFRQES 202

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                E  F+N+  + ++        K       +    H  R   AT     GA+   +
Sbjct: 203 LKPKCENIFVNSKGKPLSRQYIWKMCKKVGNFLNLELHPHIFRHSLATHLLSGGASIKTI 262

Query: 308 MATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVD 344
               G +++   + YT     +  +   +  +   SV++
Sbjct: 263 QEILGHESISTTQIYTHLIYEELKKEYFRAFKNFDSVIN 301


>gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 306

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 23/271 (8%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP--- 130
            Y +      S + N+  +++   ++++      D     +  + ++    S        
Sbjct: 12  RYIRYLKLQRSYSPNTLDAYQRDLNKLLDFLRKVDVAPFDVKLEDLQQFAASLHEHGIGS 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + L+ +R  +++ V   Y+ ++P   +E P          T +++   +       
Sbjct: 72  KSQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLST 131

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
           +EG + R   E L   GLR S+     +  L      I+          V + D  ++ L
Sbjct: 132 NEGHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEEL 191

Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                 +    I          N     +  T   I  K +A  AG+ K+   H +R   
Sbjct: 192 GYWFDDRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     GA    +    G   +   E YT 
Sbjct: 252 ATALLRGGADLRVIQDLLGHSNIGTTEMYTH 282


>gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
 gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM
           18228]
          Length = 314

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             +I++Y++      S + N+  ++ +  D+++        D  ++T   + +       
Sbjct: 8   GKIITKYKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCLEVTLDDLETFSAGLHD 67

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
                 S  + L+ +R  +++ + ++Y+  +PC  +E P+         T E++ +    
Sbjct: 68  IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+ C   +  L  N  F     K      V +   
Sbjct: 128 IDRSSREGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPK 187

Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L                ++  FI+   + ++        K  A  AG+ K+   H 
Sbjct: 188 AISELNNYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT   + GA    +    G +++   E YT   DR RL  +
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRLRQE 292


>gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 331

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 13/262 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           Y  +     L++ +  +++                 I    +R  +  R      SS   
Sbjct: 62  YLAAKKLDGLSLKTLKNYKYNLAIFADYL-RKPLATINAMDLRMFLAQRCKHMKASSVNG 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++ ++  F W   +EY+  NP L +++ K+         +E+++  +       + +  
Sbjct: 121 QISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQACETD-REKAL 179

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248
            EFL+ +G R S+        +  N  S     K      V        LL         
Sbjct: 180 IEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSD 239

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                         ++         K  A +A ++KS   H  R   AT   ++G     
Sbjct: 240 ENIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPV 299

Query: 307 LMATYGWKTVDQAETYTKGADR 328
           +    G +     + Y + ++ 
Sbjct: 300 IQHLMGHENPSTTQVYAELSEE 321


>gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
 gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622]
          Length = 310

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
           L+  +         L+  +  ++ +  +             +T                R
Sbjct: 4   LLDAFIAFIRAERGLSGKTVDAYAADINVYFEDLRSRGVSDVTQARQEDVSAHLSALGKR 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L ++R   ++ V +     +P   ++ P+   +     T E+++Q  +  
Sbjct: 64  GLGKRSQARHLAALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAP 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
            E    G + +   E L  +GLR S+ C  G+  +Q     +  +        V L    
Sbjct: 124 DERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVA 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
           ++ +                 +  F+           F    K  A KAG+    S H +
Sbjct: 184 IEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT   +  RL
Sbjct: 244 RHSFATHLVERGADLRAVQQMLGHADLATTQIYTH-VNAARL 284


>gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
 gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067]
          Length = 302

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKH 118
            TT+      +        + + ++  S++             + +         +  + 
Sbjct: 2   DTTVNNYPERFLTYLEVEKNCSQHTIESYQKDLAAFAEFMLRRNKQNFFWQQTGPLDVRG 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + +  +++   +  + ++++R  FK+ VR+  +  +P   V  PK + +      + +
Sbjct: 62  YLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEKKLPAFLDEIE 121

Query: 179 MQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
           +             G + +   E L  +G R S+     ++ +  +   +    K     
Sbjct: 122 INELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDLSNRFVLLLGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV 282
            + +       L+     ++   +   ++                      +       +
Sbjct: 182 VMPVGHTCCAALSTYYRVRQQLMLQYQQKHDFIFVNNRGGRLTDRSVRRILEKYINMLAI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +K  S H +R   AT   + GA    +    G   +   + YT  ++ 
Sbjct: 242 HKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNE 289


>gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679]
 gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679]
          Length = 378

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 102/359 (28%), Gaps = 43/359 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  +  YYF      G R ++      T   A  +     +   E         T +K
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + +     +L  N+  ++       I    G      ++   +++ + +      
Sbjct: 66  QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           S        + ++     AV    +     +   +  +  E        +  + ED    
Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------NIFSIKT 226
                EG    +      Y+G+R  + C     ++                         
Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGEWVYGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
           + + +  T+ +    + +L      +    +   K  +                +     
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWN 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +  +    ++ + H +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364


>gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans
           PsJN]
 gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN]
          Length = 311

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               ++       + +      L+ N+  ++                  + T        
Sbjct: 18  ASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNA 73

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK   +SA + L+  R  + WAVR+    ++P + +   K+        ++  ++
Sbjct: 74  YSAARRKDKSTSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVE 133

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                    +    + R   E +  SGLR ++        +  N   ++          +
Sbjct: 134 ALLGAPDINTALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLI 193

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+ N  + M   QF    K  A  AGV   
Sbjct: 194 PFGEEAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAP 253

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 254 LSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300


>gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314]
          Length = 292

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 28/296 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             LI +  +       L+ N+  S+    +++  +   G  D+     + + + +   + 
Sbjct: 4   DELIDKLLEHLWLNHRLSQNTLQSYRRDLEKVAARLRQGGKDWFGAAAEDLAAAIYVPEE 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L++ + L+ W    E  A NP   +  P ++       T+  +++  +    
Sbjct: 64  KASSQARALSACKRLYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDV 123

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
            +    + +   E +  +GLR +++ +  +  L  N  +     K      V L +  + 
Sbjct: 124 DTPHGLRDKTLLEVMYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEAVY 183

Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
            +                 +  F++  K  ++     +  K  A  AG+   S HG+R  
Sbjct: 184 WIERYCAESRPLLLKNKICDELFVSQKKSGISRQLAWMIVKEYADAAGIRSLSPHGLRHA 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   + GA    +    G   +   + YT  A++         R+  +V    P
Sbjct: 244 FATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQ---------RLKELVGKHHP 290


>gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
 gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836]
          Length = 313

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 107/308 (34%), Gaps = 37/308 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +   +S Y         LA N+  S+     +        G     ++T   +   +   
Sbjct: 4   IGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLAGAGISALGRVTEAVVGDFLMRL 63

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         T SSA + + ++R   K+ +R+    I+P  +V+ P       +  + ++
Sbjct: 64  REGDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVDE 123

Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229
           + +  +  +          ++     EFL  +G R S++    V  +      +    K 
Sbjct: 124 VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRGKG 183

Query: 230 GTIITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKAT 278
                V +     + L+   +                F+N    +++        +  A 
Sbjct: 184 SKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRAAQ 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRL--GI 333
           +AG++K  S H +R   AT   D GA    +    G  +V   + YT    D++R     
Sbjct: 244 RAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYAT 303

Query: 334 KNSRRISS 341
            + R +SS
Sbjct: 304 SHPRALSS 311


>gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
 gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279]
          Length = 302

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 28/283 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126
           L+    EY        +L+  +  ++    +       +        +T + +   V  R
Sbjct: 4   LERCCREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLAERGVTGPDSVTRRDVEDFVAHR 63

Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180
           + T +   S  + L++++ L ++ VR+      P  ++  PK         + +      
Sbjct: 64  RETGAADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISIDQACALL 123

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
            Q     + G++   A E L   GLR S+     V+ L  +   +    K        + 
Sbjct: 124 DQPFPATAAGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMGKGSKERLAPIT 183

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKAKATKAGVN 283
              ++ L           +    +               +++        +      G+ 
Sbjct: 184 GSALRALEAYLTLGARDELMGHARAAGVSPAVFLNARGTRLSRQSVHAICERYGRMVGIE 243

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT     GA    L    G   +   + YT  
Sbjct: 244 GLHPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHV 286


>gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47]
          Length = 300

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 28/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVES 125
           +  I+ + +      + +  +  ++           G           +T + +R    +
Sbjct: 2   RTAITRFLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDSLTPQQLRQFQAA 61

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +      ++  + L S+R  FK+A+R+   + NP   +  P+   +     T E++ + 
Sbjct: 62  LQQAGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEVGRL 121

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                     G + R   E +  SGLR S+        L  +    + +          L
Sbjct: 122 LVAPPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERISPL 181

Query: 238 PDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
               +K +      +               F+N     +         +    KA ++  
Sbjct: 182 GSYAIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELDTR 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S H +R   AT   D GA    +    G K++   + YT  +
Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVS 284


>gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
 gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 86/284 (30%), Gaps = 27/284 (9%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVE 124
           ++       + +      L+ N+  ++                  + T            
Sbjct: 27  SIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLSAYSAA 82

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K   +SA + L+  R  + WAVR+   A +P L +   K+        ++  ++    
Sbjct: 83  RQKDKATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLG 142

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                +    + R   E +  SGLR ++        +  N   ++          V   +
Sbjct: 143 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +                    F+    + M   QF    K  A  AGV    S H
Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 305


>gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 295

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 27/278 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---S 131
           Y +       + N+ +S++    Q+       G  +  K+T   + S +   +      +
Sbjct: 11  YLR--EIKKTSKNTEVSYQRDLMQLASFLEQQGIREVDKVTKTSLTSYILHLEKEGKATT 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           +  + L SM+  F +  ++  +  +P   ++ PK + +     T +++    S       
Sbjct: 69  TISRCLASMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDEVNSLLSQPGGETP 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  + R   E L  +G+R S+        +  +I  I  +       V         L+ 
Sbjct: 129 KELRDRAMLELLYATGIRVSELIHLKKTDVNLSIGYITCRDEHKERMVPFGKVAKLALSA 188

Query: 248 TPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                  +F+ + +             +   F    K    KAG+  + + H +R   A 
Sbjct: 189 YMERGRVYFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLRHSFAA 248

Query: 296 ISADAGATAHELMATYGWKTVDQAET---YTKGADRIR 330
                GA  H + A  G   +   +    YT+G D  R
Sbjct: 249 HLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRR 286


>gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
 gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1]
          Length = 302

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 98/294 (33%), Gaps = 34/294 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--------RKITTKHIRS 121
            +  I++YR        L+ NS  ++     ++I    +             I  + I +
Sbjct: 3   WQQAITDYRHYLQIERGLSKNSIENYCYDIKKLIVYLEENALIVSPITTDNAIVKQFIYT 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
             +S      S  + ++ +R  F + + + Y   NP   +E P+   +     + +D+  
Sbjct: 63  ISKSLN--ARSQARLISGLRNFFDYLIFENYRETNPLDLIESPRIGRKLPDTLSIDDIDN 120

Query: 181 --------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231
                      +  + G + R   E L   GLR S+     +  L  +  F   T K   
Sbjct: 121 LVNNIDLSYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKVTGKGDK 180

Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281
              V +       +A+    +             F+N   +K+         K    K+G
Sbjct: 181 QRFVPIGLTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSG 240

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + K  S H  R   AT   + GA    +    G +++   E Y    DR  L  
Sbjct: 241 ITKNVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMH-VDRSHLSD 293


>gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 298

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           I  +  +      L+ N+ +S+ +   ++ + S D +YR +T      +  +  +     
Sbjct: 8   IERFLDAMWMERGLSENTLMSYRNDLTKLRKWSEDKNYRLVTLSSDDLQRYQQWLFDADF 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R LF++  R++    +P   +  P+      +  T+E +         
Sbjct: 68  KQTSRARMVSAIRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALLDAPDT 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR ++     ++++      ++          V + +  + 
Sbjct: 128 NNPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKERLVPMGESAID 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +                    F +   ++M    F    K  A  AG++    S H +R
Sbjct: 188 WIEEFIDSGRPQLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGIDTDTLSPHVMR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 248 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5]
          Length = 294

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127
           I E+    H     + N+ +S++    ++     D       D  ++  +   S +E  +
Sbjct: 5   IREFITYLHNRKRTSHNTEVSYQRDLKKMAVYFADRGIYDIRDVGELELEGYLSYMERGQ 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + + S+R LF++  ++  +  +P L ++ PK +       T +++ +      
Sbjct: 65  FASSTISRNVASIRALFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPD 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +    +     E L  +G+R S+  R  ++ L   +  +          + + +    
Sbjct: 125 LNTPKGIRDSAMLELLYATGMRVSELLRLNLEDLNLRLGYVVCHDEDKERVIPIGNVCKT 184

Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            +                 E+ F N   + M+   F    K  A +AG+  + + H +R 
Sbjct: 185 AMEKYLKEARGKFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A      GA    +    G   +   + Y
Sbjct: 245 SFAAHMLQNGADVKSVQEMLGHSDISTTQVY 275


>gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
 gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1]
 gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335]
          Length = 307

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGV 123
              +  Y        + ++N+  ++     +         G  D+ K++++ I      +
Sbjct: 5   DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +K   S+  + ++++R  +++  ++  + +NP   +       +       ++M +  
Sbjct: 65  AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYSDEMVKVL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G +     E    +G+R S+     +  +   +  I    K      V   
Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184

Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +     L                     F+N++  ++ +       K     AGV+ S  
Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G +++   + YT    +
Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 287


>gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Boryong]
 gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong]
          Length = 309

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 35/288 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKH 128
             + ++ ++     +++ NS ++++               +    +TTK I S ++    
Sbjct: 2   DFLEQFLETVLAEKNVSANSLLAYKRDLQDFSDFLKSIQLQSSLAVTTKDIDSFIQHLLS 61

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + ++++R  + + + +  V  +   ++E P+  T+  +  + ++++    +
Sbjct: 62  KNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLIDY 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TII 233
             + +     +       L  +GLR S+     +  L+ +  + K +             
Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKA 280
            V + D    +++     ++ F    +             +  M    F+I  K  A  A
Sbjct: 182 LVIMNDLTGDVISRYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKNAAINA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G+   N S H +R   A+   + GA    +    G   +   + YT  
Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHV 289


>gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
 gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1]
          Length = 301

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126
           L+  +  + +       L+  ++ S+      ++  + +       ++    +RS     
Sbjct: 5   LQEAVDGFLRYLKVERQLSPLTQSSYARQLAALVAIADEMKLGSWAQLEPAQVRSMAARS 64

Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    SA      L+++R    W V Q  ++ NP   V  P++     +    +++ Q  
Sbjct: 65  RRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLL 124

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +   GLR S+      +H+  ++       K      V +  
Sbjct: 125 EIDLNDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGR 184

Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +ETF   +          +++       F     + GV  +   H +R
Sbjct: 185 TAVTWIQHWLPLRETFGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVASHIHPHKLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285


>gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
 gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 85/295 (28%), Gaps = 26/295 (8%)

Query: 65  RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                ++       + +      L+ N+  ++                  + T       
Sbjct: 20  TASSASIDAFCDALWLEH----GLSRNTLDAYRRDLRLFSEWLAQTRSASLDTASEADLN 75

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +K   +SA + L+  R  + WAVR+    ++P L +   K+        ++  +
Sbjct: 76  AYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQV 135

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +            G + R   E +  SGLR ++        +  N   ++          
Sbjct: 136 EALLGAPDIETPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERL 195

Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
           +   +     +                    F+ N  + M   QF    K  A  AGV  
Sbjct: 196 IPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHA 255

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             S H +R   AT   + GA    +    G   +   + YT  A      +    
Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMH 310


>gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR]
 gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 22/283 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
           I  + +        + N++ ++ S   +             D  ++  +        +  
Sbjct: 12  IDAFTEHLWLHHGSSNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEVVLQDYLLWRRMQGL 71

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           +P S  +FL+S +  F++AV+Q++VA++P   ++RPK         ++ED+         
Sbjct: 72  SPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDT 131

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E L  +GLR ++  R     L      ++          V L +  ++
Sbjct: 132 ETPIGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALE 191

Query: 244 LLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            L                   F+      +    F    K  A +AG+  + S H +R  
Sbjct: 192 WLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHA 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            AT   + GA    L    G   +   + YT+ A      +  
Sbjct: 252 FATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHA 294


>gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ]
          Length = 399

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 106/339 (31%), Gaps = 24/339 (7%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     R   GRRI   +  +      + + L       +      K     K  ++ + 
Sbjct: 60  KYRIDVRMPDGRRITKSFSRKYD-ADKFKAELLLEKTGIQDTGIYIKNDVKFKDFVATWF 118

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++   G  A  ++ ++ S     I+   G+   + I  +H R    S   T  SA     
Sbjct: 119 ETQVKGRKAKKTQQAYVSDLRNHILPILGEIQLKHIRYQHARLLENSIIETGKSARTVNK 178

Query: 139 SM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            M   + +   AV+ EY+  +P       + +   +  W+KE+++ F  F        L 
Sbjct: 179 VMMEFKTILNDAVKLEYLLKSPVRGYPELQEEPRHLTFWSKEEIRVFIDFNKANPLLDL- 237

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------TGTIITVELPDGFMK 243
           +   L +GLR  + C      +     ++   +            T     V +      
Sbjct: 238 YIVALNTGLRLGEICGLCWDRVDFTTNNLVINRSLTRDGIRNTTKTHRGRYVPMNTIVRD 297

Query: 244 LLAMT--PIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN--KSAHGVRKFSATISA 298
           +L         +  F     + +     +   FK    +AG+      H +R   A+   
Sbjct: 298 ILQKRLRTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHTFASHFM 357

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
             G   + L    G   +     Y     D +R   +  
Sbjct: 358 MNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREAAEVV 396


>gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment']
          Length = 295

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 103/282 (36%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
           LI +Y +       LA NS  ++     +I+      G   +R+++   +   + + +  
Sbjct: 4   LIEDYLRYLAVEKGLAENSLAAYGRDLRRIVGYFKQGGVGSFREVSRGQVARLLLTLREA 63

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----F 182
              P +  +  +S+R L+++ + Q++V  +P   +E            ++E++++     
Sbjct: 64  GLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLLAAP 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITVEL 237
            +    G + +   E L  +GLR S+     +  +   +  +  Q          +  + 
Sbjct: 124 LTSNPLGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDRVVPLGRDA 183

Query: 238 PDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                + L  +    +  +       N     +    F    +A A  AG+++  + H +
Sbjct: 184 QTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGIDRRVTPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT    R  L
Sbjct: 244 RHSFATHLLERGADLRAVQMMLGHADISTTQIYTH-VSRAHL 284


>gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
 gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136]
          Length = 312

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 107/295 (36%), Gaps = 24/295 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
           + +I +Y++      SL+ N+  ++ +  D++       + DY ++T + + +       
Sbjct: 8   EKIIIKYKQYLKLEKSLSENTVQAYLTDLDKLFAYLTLENIDYTQVTLQDLETFSAGLHD 67

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----Q 181
               P S  + L+ +R  + + V  +Y+  +P   +E P+         + E++      
Sbjct: 68  IGIHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGS 127

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 EG +     E L   GLR S+ C   +  L  +  F     K      V +   
Sbjct: 128 IDRSTREGQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPR 187

Query: 241 FMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  +    I           ++  FI+   + ++        K  A+  G+ K  S H 
Sbjct: 188 AINEIRNYFIERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIGLKKKISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            R   AT   + GA    +    G +++   E YT   D+ RL  +        +
Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDKNRLRQEIIGHHPRNI 301


>gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071]
 gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071]
          Length = 378

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 103/359 (28%), Gaps = 43/359 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  +  YYF      G R ++      T   A  +     +   E         T +K
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + +     +L  N+  ++       I    G      ++   +++ + +      
Sbjct: 66  QYLDFWMEEYVKLNLKYNTYENYRFTIKNHIDGYLGKKKLTDLSPALLQNFINAEFKKGY 125

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           S        + ++     AV    +     +   +  +  E        +  + ED    
Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226
                EG    +      Y+G+R  + C     ++  +                      
Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTTTVEKQMVKNDGAWIYGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
           + + +  T+ +    + +L      +    +   K  +                +     
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTPSVVKWN 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            K  +    ++ + H +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 306 TKRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364


>gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
 gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1]
          Length = 325

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 28/285 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSG--- 122
           L+  + +       LA N+  ++ +                      +IT +H+R+    
Sbjct: 31  LLDFFLQYLAAERRLAANTLTAYHTDLLSFFDFLARRRPTPAISGPAEITPEHLRAYLEA 90

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              R+    S  + L+++R  F++  R+  +  +P   ++ PK      +    +++ Q 
Sbjct: 91  CRRRQIAARSNARRLSALRAFFRFLRRENLIPADPSALLDLPKPGRPLPKVLNLDEVNQL 150

Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +          +       L  +G+R S+     V  +          K      +   
Sbjct: 151 LAGPAAATPLALRDHAMLHLLYATGMRVSELVNLPVAAVNQAGHLRVLGKGSKERLIPFG 210

Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               + LA                   F+ N    M   +F    + +A    ++K    
Sbjct: 211 AAAGRSLARYITQGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRIDKEVGP 270

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    + A  G   +   + YT   D  RL
Sbjct: 271 HVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTH-VDAQRL 314


>gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 310

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 86/279 (30%), Gaps = 22/279 (7%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---S 131
           + + A     LA  +  ++       +    +   D   I  + +   +   +       
Sbjct: 14  FLEHALVIKGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYLMFLRRKGLQSR 73

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
           S  + + S+R  + +   Q  +  NP   +E PK      R  +  +++   S       
Sbjct: 74  SLARHMASLRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLSIPEVESILSQPSTGDK 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            G++ +   E L  +GLR S+     V              K      V L    M+ L 
Sbjct: 134 LGARDKTMLEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARERLVPLHFSCMQWLD 193

Query: 247 MTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                  + F     +          +        K     AG+ K  S H +R   AT 
Sbjct: 194 FYLQHWRSSFSPRVDKVFINRSGKALSRQGVWKIIKKYTVMAGIKKDVSPHTLRHSFATH 253

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
             + GA    +    G   +   E YT   +DR++    
Sbjct: 254 LLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHD 292


>gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032]
          Length = 315

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 18/310 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII 103
            +                S    P+ L  LI ++ +        +  +   + S    + 
Sbjct: 3   ESKKKVARSGRNAPPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMA 62

Query: 104 RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               D D   + T +           + ++  +   S++    WA +  ++  +    + 
Sbjct: 63  DTIEDIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLI 122

Query: 163 RPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            PK   +  +   ++    F      +   E  +     E L  +G+R ++ C   +  +
Sbjct: 123 SPKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDI 182

Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQF 269
             +   ++   K      V   +   K L      ++    +          Q++NA Q 
Sbjct: 183 DYDRKMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQV 242

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++
Sbjct: 243 RRIVDRAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNK 302

Query: 329 IRLGIKNSRR 338
             L  +   +
Sbjct: 303 RLL--EAFNK 310


>gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae]
          Length = 303

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
           LI ++  +      LA N+  S+ +    ++       Y  +T      +   +      
Sbjct: 12  LIEQFLDTIWLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVMDLQSFLAERVEGG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  +S+ + L++MR LF++  R++    +P   +  PK      +   ++ ++       
Sbjct: 72  YKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQVEDLLHAPT 131

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L   GLR S+     +  +      I+          V L +  +
Sbjct: 132 TQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKERLVPLGEEAI 191

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             L                    F +    +M    F    K  A  AG++    S H +
Sbjct: 192 YWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIAGIDSAKLSPHVL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 252 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 291


>gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str.
           McKiel]
 gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC
 gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel]
          Length = 305

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS 121
            T+++ LI+++++      + + ++ +S+ +     +     ++        I T  IR 
Sbjct: 3   DTSIQELINKWQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +K+  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCNNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  +GLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+  T F+          G
Sbjct: 183 GSKERIIPWLPIVKNLITQYLEILPYKLGENEPIFRGKQGKKLQPTVFNRELIKLKRFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    +    G K++   + YTK +
Sbjct: 243 LPEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289


>gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
 gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama]
          Length = 305

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 101/296 (34%), Gaps = 30/296 (10%)

Query: 74  LISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
            + ++  K     +  +N+  S+ +    +         +  + +++   + + +    +
Sbjct: 8   YVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRGLKDASKENLYEYIANLRAQQLS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + + + R  F +   ++  + NP  S+E PK+     R  TKE++    +F   G
Sbjct: 68  NATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLTFLEAG 127

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGF 241
                +     E L  SG+R S+     V  ++         I   K      +      
Sbjct: 128 QPATLRLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERILPFSKKA 187

Query: 242 MKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
           +++L +     ++             + M+  +     K  A K  ++    S H +R  
Sbjct: 188 IQVLKLYLTSYQSNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDPKRISPHVIRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   D G     +    G   +   + YT  +           ++   +++  P
Sbjct: 248 FATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ---------HKLHKEIEAKHP 294


>gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 298

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           +I  +  +      L+ N+  S+ +   +++        +   ++   ++   +      
Sbjct: 7   IIERFLDAMWMERGLSENTLASYRNDLMKLLNWLKQESRNVINVSVDDLQRYQQWLFDKD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + ++++R LF++  R++    +P   +  PK      +  ++  +        
Sbjct: 67  YKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLDAPD 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +  +
Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAI 186

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDAETLSPHVM 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160]
 gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160]
          Length = 318

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 86/284 (30%), Gaps = 27/284 (9%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVE 124
           ++       + +      L+ N+  ++                  + T            
Sbjct: 29  SIDAFCDALWLEH----GLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLTAYSAA 84

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            ++   +SA + L+  R  + WAVR+   A +P L +   K+        ++  ++    
Sbjct: 85  RQQDKATSANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEALLG 144

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                +    + R   E +  SGLR ++        +  N   ++          +   +
Sbjct: 145 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPFGE 204

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +                    F+    + M   QF    K  A  AGV    S H
Sbjct: 205 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLSPH 264

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 265 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 307


>gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
 gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330]
          Length = 314

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 93/293 (31%), Gaps = 28/293 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITT 116
           +     +  T      ++ +        +  ++ ++E         + +SGD D  K   
Sbjct: 6   LGQKEGEKMTEATWEQKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEY 65

Query: 117 KHIRSGVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +R  + +       ++ +S  + + S+R  +++ +++E +  NP   V   K+     
Sbjct: 66  FTVRVYLSALADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLP 125

Query: 172 RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KT 226
           R + + +MQ              + R   E L  SG+R S+     V  +  +   +   
Sbjct: 126 RFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIH 185

Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274
            K        L       L                   +  F+N+  + +  T       
Sbjct: 186 GKGNKERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLN 245

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               K+ ++     H +R   AT   + GA    +    G   +   + Y   
Sbjct: 246 QIIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 298


>gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd]
 gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd]
          Length = 295

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    TL W+I  YR S  +  LA  ++  +E+ FD++       ++  +  +HI  
Sbjct: 2   KRGKYGHGTLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHDY-AQEEFSGLRRRHIMR 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +   H+P++A Q +T++  + ++A+ +E +  +P  S   P+ KT   R WT  ++ +
Sbjct: 61  VRDDLAHSPATANQVITAIGAVCRFALDREMIETDP--SHRVPRLKTGEWRRWTDAELDK 118

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F     E    R  F   L++G R +D CRA    +Q+   ++  QKTG  + + L    
Sbjct: 119 FYQSAYEAL--RRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPTL 176

Query: 242 MKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
            + LA+               + D+        S  F+ +A K G+N  + HG+RK +A 
Sbjct: 177 ERHLAIWKSDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAAA 236

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             A+AG +A ++MA  G  T+++ E YT+ A++ RL         +
Sbjct: 237 KLAEAGCSARQIMAITGHSTMNEVERYTRQAEQRRLASDAIGAFDA 282


>gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM
           12804]
 gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii]
          Length = 310

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 93/307 (30%), Gaps = 35/307 (11%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110
             P      +   I   + +      LA N+  ++        R                
Sbjct: 4   ADPLASQADIDAFIDAVWLED----GLAANTLAAYRRDLSAFARWLETPAEHGGAATASL 59

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R   T  I +   +R      ++A + L ++R  + WA+R+     +PCL++   K+  
Sbjct: 60  LRDAGTGDIEAWFAARHADSRATTANRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPP 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  +          +    + R   E L  +GLR S+     V  +  N   +
Sbjct: 120 RMPKTLSEAQVDALLRAPDLNTARGLRDRAMLETLYATGLRVSELVNIKVLEVSLNEGVV 179

Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
           +    K G    V L       +                    F+    Q M    F   
Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIDRYLKEARPDLAGARVSDALFLTARAQPMTRQAFWQL 239

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  +GV    S H +R   AT   + GA    +    G   +   + YT  A    
Sbjct: 240 IKKYAVVSGVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299

Query: 331 LGIKNSR 337
             +  + 
Sbjct: 300 KALHAAH 306


>gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
 gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium
           HdN1]
          Length = 316

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 28/284 (9%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           +   +   + +      L+  +  ++    +Q  R   +      ++    ++  +++R 
Sbjct: 27  ISAWLDAVWLE----KGLSSRTLEAYRQDLEQWCRWCSEQAVLLEQVDADTVQRYLQARA 82

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L+ +R  F + VR   +  +P   VE PK      R  ++ D+    +
Sbjct: 83  QHGTHSRSLARMLSCLRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADVSALLA 142

Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
             +       + R   E L  +GLR S+     +  +      ++    G+         
Sbjct: 143 APNLEDPLELRDRAMLEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLVPLGE 202

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +E      + L ++    +  F      +M    F    K  A +AG+  + S H
Sbjct: 203 EALFWLERYFLQARALLLSSSDDDIVFPGRRGTEMTRQAFWYRIKYHAQQAGLRVHLSPH 262

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R+RL
Sbjct: 263 TLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVA-RLRL 305


>gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
 gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235]
          Length = 309

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 26/286 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127
           + ++         L+ N+  +++S   Q +           ++K+T  H+   + +    
Sbjct: 9   VDDFLAYLTLEKGLSDNTIENYQSDLSQFLAHVEKSSRVGSWKKLTASHVSDWIYALSEG 68

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ +S  + L+S+R L  + +R+  +  +    V  PK + +     + +++++  S  
Sbjct: 69  DYSNASLCRKLSSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQEVERLLSAP 128

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + R   E    SGLR S+     +Q +   + ++K            +    
Sbjct: 129 DLTTAQGLRDRAMLELFYSSGLRVSELSGLMLQQIDLELGALKIYGKGSKERVCPMGRKA 188

Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGV 289
              +          F+ +              ++     +  +     AG++K    H +
Sbjct: 189 ATAIGDYLRNGRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKYTKAAGIDKPVKPHML 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           R   AT     GA    +    G   +   + YT   ADR R    
Sbjct: 249 RHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHD 294


>gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 275

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 93/261 (35%), Gaps = 19/261 (7%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +  + +       ++ N+  +++    Q  +   + D   + +  +   +    +   S
Sbjct: 4   YLEAFLEYLLINKGVSKNTYEAYKRDLVQFEKFI-EKDIIDVDSNDVIRFLSQIDNK-RS 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
             + L+++   F +A ++ YV       +++ K      +  +KE++    S     S  
Sbjct: 62  LNRKLSAINSFFDFAYKRNYVDEKF--KIKQAKLPKSLPKYLSKEEILTPISHIDSNSSW 119

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMK 243
              + +    FL  +GLR S++    +  +++    ++  K      V + D       +
Sbjct: 120 FELRDKALILFLYATGLRISEALNIKLSDIEDGWVRVEMAKGEKQRLVPIADVALKAIEE 179

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            LA  P   E  F+N +  K++        K          S H +R   AT      A 
Sbjct: 180 YLAKRPCRSEYLFVNKNCNKLSRISAFNITKKYLA-----VSPHVLRHSFATSLVLGNAD 234

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G  +++  + YT 
Sbjct: 235 LRVVQELLGHASLNTTQIYTH 255


>gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 400

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 97/379 (25%), Gaps = 55/379 (14%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +  +GK       G   +G   R  +  ++         +            P     T
Sbjct: 20  YKMSNGKFRGQLTIGYNENGTPKRKSFTGKTK--KEVSDKMKDFYVDNNRGLLPTDDKIT 77

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR-- 126
           L      +  +     L  +S   +E  +   I     G      + T HI++   S   
Sbjct: 78  LSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQAYYNSLVS 137

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQF 182
             + +PS+       ++     A+++ Y+  N C  +  PK                QQ 
Sbjct: 138 EERKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGSESPKEIINIFTLEEQQT 197

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                  ++  + +   L +GLR  +        +      I   K              
Sbjct: 198 FMKECMNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNR 257

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------- 267
                           TV L D  ++LL      +     +N +   +            
Sbjct: 258 EFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNLVFSTPIGNY 317

Query: 268 ----QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    FK    K  +     H +R   AT   + G     +    G   +      
Sbjct: 318 LNESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNI 377

Query: 322 YTKGA-DRIRLGIKNSRRI 339
           YT    D     I     +
Sbjct: 378 YTHVMKDTKDKAIDKLNFL 396


>gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 303

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 86/280 (30%), Gaps = 21/280 (7%)

Query: 71  LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVE 124
           LK +  ++          + ++  ++     Q  R              I  ++    + 
Sbjct: 8   LKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLY 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
                 ++  + ++++R  + + + Q++  +NP + +  PK++      +  E+M    Q
Sbjct: 68  DLGLQRTTVSRKISTLRSFYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQ 127

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                  +G + R+  E    +G+R S+      + +     +     K G    V   +
Sbjct: 128 TVMQDAHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGE 187

Query: 240 GFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGVN-KSAHGV 289
              + +                          +              + AGV     H +
Sbjct: 188 FCRQSIEQYLAEFAPIQNVQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    + +  G   +     YT   ++ 
Sbjct: 248 RHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ 287


>gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS]
 gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS]
          Length = 303

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 30/286 (10%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVES 125
           +   I   + +      L+ N+  ++        +  G               +++ +  
Sbjct: 12  IDEFIDALWLED----GLSKNTLAAYRRDLALFSQWLGKQRSGIALDTAQESDVQAYMGV 67

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R   K   +SA + LT  +  ++WA+R+  +  +P + +   ++    I+  +++ +   
Sbjct: 68  RLSTKGKATSANRRLTVFKRYYRWALRERRITADPTIRLAPARQMPRAIKTLSEKQVDDL 127

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237
            +        G + R   E +  SGLR S+      +    N+       K      V  
Sbjct: 128 LAAPDVETPLGLRDRAMLEVMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNKERLVPF 187

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKS 285
                + +           ++  +            M    F I  K +A  AG+    S
Sbjct: 188 GGEARRWIERYLEESRPVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLS 247

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + G     +    G   +     YT  A R RL
Sbjct: 248 PHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVA-RERL 292


>gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
 gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris]
          Length = 353

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 116/335 (34%), Gaps = 20/335 (5%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + K  ++ GKI Y  +    G   +       T    ++     +  +  +  +   K  
Sbjct: 4   IEKRTSKEGKISYRVKIRLKGFPTQHATFERLTDARKWVQQTESAIREGRHFKTTEAKRR 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           TL  +I  Y K          +  +   + +    + G +   +++   I    +     
Sbjct: 64  TLGEMIDRYIKDVIQE--KPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKRDKLSAG 121

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 K +PS+ ++++ S+   F  AV++  ++  +P   V +PK     +R  + ++ 
Sbjct: 122 ITSRNLKRSPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGRVRFLSDDER 181

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  S   +     L  A    L +G R  +      +++  N   I   +T       L
Sbjct: 182 ARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITLHETKNGERRVL 241

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
           P     L  M    K     ++                 F+    +AG+ +   H +R  
Sbjct: 242 PLTGHALDLMKQHAKVRHVNSDLVFPGKDFKTPIDLRTPFETALKRAGITDFRWHDLRHS 301

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A+  A  GA+  E+    G KT+   + Y   ++
Sbjct: 302 CASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSE 336


>gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi
           35000HP]
 gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD
 gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP]
          Length = 297

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125
           L  +I ++  +     SL+ N+ +S+    +                    +        
Sbjct: 4   LDPIIEQFLDTLWLEQSLSHNTLLSYRLDLELFSAWLVEPRAFLTLTHTDLQLFLGDRLD 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +  SS+ + ++ +R  F++   ++Y   +P   +  P+++ +  +  ++E +      
Sbjct: 64  KGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLLDA 123

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTG 230
            +       + +   E L  +GLR ++     + +L      ++                
Sbjct: 124 PNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKERLVPIGEE 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
               ++    + +++ ++    +  F +   ++M    F    K  A  AG++    S H
Sbjct: 184 ASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGIDAEKLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 244 VLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTR 285


>gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 23/276 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            +  E+         LA N+  ++     + +          +T   +   V S      
Sbjct: 34  AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTITELSDFVASLHGEGL 93

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + + ++R  FK+   +     NP   +   K         +  +++ F S   +
Sbjct: 94  APASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKK 153

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E L  +G R S+ C   V+ L  +  +++          V +    ++
Sbjct: 154 SDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIR 213

Query: 244 LLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGV--NKSAHGV 289
            + +          + +  +++              Q     K  A +AG+    S H +
Sbjct: 214 AIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEISPHSL 273

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT     GA   ++    G  ++   + YT  
Sbjct: 274 RHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV 309


>gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15]
 gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15]
          Length = 378

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 103/359 (28%), Gaps = 43/359 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  +  YYF      G R ++      T   A  +     +   E         T +K
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + K     +L  N+  ++       I    G      ++   +++ + +      
Sbjct: 66  QYLDFWMKEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           S        + ++     AV    +     +   +  +  E        +  + ED    
Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226
                EG    +      Y+G+R  + C     ++  +                      
Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGAWVYGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
           + + +  T+ +    + +L      +    +   K  +                +     
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTPSVVKWN 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +  +    ++ + H +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 364


>gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533]
 gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC
           533]
          Length = 307

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 104/302 (34%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123
             LI +++   ++  + + N+  S+ +  ++            G    +    +     +
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++  + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +  ++  I    K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 L                 +   F+NN  QK+         +    KAGV     
Sbjct: 186 KDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
 gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147]
          Length = 300

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 18/262 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            L+ N+  ++     +I  +        +      + + +   +  P S  + L++ + L
Sbjct: 25  RLSQNTLDAYRRDLTKIATRLANEHSSLKTTDAVQLAAAIYVAQEQPRSQARALSACKRL 84

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFL 199
           + W       + NPC  +   K+        T++ +    +        G + +   E +
Sbjct: 85  YAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAPDTETPHGLRDKALLELI 144

Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------- 251
             +GLR S++    +  +   +       K      V + +  +  L             
Sbjct: 145 YATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVPMGEEAVYWLEHYLQHARPALLK 204

Query: 252 ---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               E  F++  K  ++     +     A +AG+   S H +R   AT   + GA    +
Sbjct: 205 NARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMPHISPHDLRHAFATHLVNHGADLRVV 264

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G   +   + YT  A+  
Sbjct: 265 QTLLGHADIATTQIYTHVANER 286


>gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16]
 gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16]
          Length = 312

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 84/269 (31%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ N+  ++      + R       G+                  +   SSA + L   
Sbjct: 34  GLSRNTIDAYRRDLTLLARWLQHEHRGELPGADDGALSAYFNARHTQSRASSANRRLAVF 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  ++WA+R+  V  +PCL +   K+     +  T+  +             G + R   
Sbjct: 94  RRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQVDALLEAPDTDTPLGLRDRTML 153

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248
           E +  SGLR S+  +     +  N    +    K      V         L         
Sbjct: 154 ELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+    + M    F    K  A  AGV    S H +R   AT   + GA
Sbjct: 214 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301


>gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
 gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 81/290 (27%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          + N+  +++      +           G      I T  +R+ 
Sbjct: 31  RDALENWLLGLTALSGASENTITAYQGDLTSFLGFMTLHRGSPQGLKALADIKTADMRAW 90

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   + +   P S  + L++++  ++W   +E       L+   PK + +  RP  +E  
Sbjct: 91  MAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARAPKFQKKLPRPLAEEAA 150

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +               G++       L   GLR S++                  K G  
Sbjct: 151 KAVLERVEQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGDAPLPASLRILGKGGKE 210

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK- 284
             V + D     +                          N  Q          + G+   
Sbjct: 211 RLVPVLDAARDAVDHYLALCPHSAEKETPLFRGVRGGALNPRQIQSTMAKVRAQLGLPAS 270

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   +AG     +    G  ++   + Y    D   L  
Sbjct: 271 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYA-AVDTAHLMA 319


>gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 295

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
              LI +Y     +    +  +   + S                 T   +R+ +      
Sbjct: 6   FHELIEDYCDHLRFNEGKSEATIRGYRSDLLLACEYLNG--VAGFTLTGLRAWLGEAVSA 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             + ++  +   ++R    WA +Q Y+  +    +  P +        T +   +     
Sbjct: 64  GKSRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMMGNA 123

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
                 E  +     E L  +G+R ++ C   V  +         T K      V     
Sbjct: 124 GSHSEPEFLRDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQRVVPFGAP 183

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
               L          F                +++  Q     +  A   GV+  + H +
Sbjct: 184 ARNALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVDGITPHSL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R  +AT   + GA    +    G  ++   + YT  +   
Sbjct: 244 RHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGER 283


>gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
 gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM
           17393]
          Length = 316

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 25/293 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTP 130
            +Y K      L+ N+  ++ +  ++++      +   +       +   +G+      P
Sbjct: 21  QQYLKLEKA--LSANTLDAYLTDLNKLLCFLKTENIDMLAVTLDDLQRFAAGLHDIGIHP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S  + L+ ++  F + V  +Y   +P   +E PK   +     T E++           
Sbjct: 79  RSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIISTVDMSK 138

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
            EG + R   E L   GLR S+ C   +  L  +  F     K      V +    +K +
Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAIKEI 198

Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                           ++  F+      ++        K  A KAG+ K  S H  R   
Sbjct: 199 KYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFRHSF 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 319

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 109/282 (38%), Gaps = 17/282 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           ++ +  +     L+ ++   +    +      +  G     +I   H+R  +   +    
Sbjct: 32  LNAFVLTCKVARLSPHTIRYYTYALNSFLGYCQTLGINTVEEIEANHVRLYLVKLQERNN 91

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           P+S + +  +++  F W + +  ++ +P  +++ P+ + + IRP+T++ ++   +     
Sbjct: 92  PTSVLDYYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQIEDLLATCGDS 151

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITVELPDGF 241
             G + +     +L +GLR S+     ++ +  +  +I        +    I  +  +  
Sbjct: 152 PIGLRNKAMILTMLDTGLRVSEMSAIQLKDVDFDKETIIVMGKGAKQRVVRIGHKAQETI 211

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
           ++ L          +++     ++     +  +    +AG+     S H  R   AT + 
Sbjct: 212 LRYLLTRQDECPALWMSTTGSGLSTEGIKVVVRELGKRAGLTGVRCSPHTFRHTFATQAL 271

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             GA   E+ +  G  T+   + YT         ++  ++ S
Sbjct: 272 INGAGEFEVQSLLGHSTLVMTKRYTASLKSEH-AVQEHKKFS 312


>gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM
           4166]
          Length = 298

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 25/286 (8%)

Query: 70  TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
           TL   +I  Y  +      LA NSR ++ +          +          + I   +  
Sbjct: 3   TLDDPVIDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREIILDHLAW 62

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R    +   S  +FL+ +R  +++ +R+  ++++P L V+ P+      +  ++ D++  
Sbjct: 63  RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +        G + R   E L   GLR ++     ++ +      ++T         V L
Sbjct: 123 LAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPL 182

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            +  +  L                    F +   ++M    F    K  A  AG+    S
Sbjct: 183 GEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARVAGIATGIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 243 PHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARL 287


>gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis
           HTE831]
 gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC
 gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831]
          Length = 305

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 28/282 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TP 130
           EY +     + +  +   + +  +         G      +T K +R  + S      + 
Sbjct: 13  EYLQIE--KNASPYTVKYYRNDLEIFADFLRSEGLSHIANVTYKDVRIFLTSLYEQELSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S  + ++++R  +++  R+ YV  NP + +  PK          +E+     +      
Sbjct: 71  RSVSRKISTLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEELDKLFEVNDITT 130

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL-------- 237
             G + +   E L  +G+R S+     +Q +   I       K      V          
Sbjct: 131 PLGQRDQALLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYVPFGSFAEIAL 190

Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                +G  KLL  +    E  F+N+    +              +A +  +   H +R 
Sbjct: 191 ETYLQEGRTKLLEKSNSDTEFIFLNSRGGHLTNRGIRTILNKIVERASLTVHVHPHKLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
             AT   + GA    +    G +++   + YT    D +R  
Sbjct: 251 TFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREA 292


>gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S]
 gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S]
          Length = 309

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L  LI  Y          A N+  S+    D+    +   G  D R +T   +   V + 
Sbjct: 4   LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDIRSVTETDVSEFVVAL 63

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +            PSSA + L ++R L ++A  +   + +   +V+ P       +    
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
           +D+                   + R   E L  +G R S++    V  L     S+    
Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    +  +    +              F+N    +++           A 
Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
 gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489]
          Length = 297

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 22/293 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           K L+ E+     +  +    +  ++     + +           K+T + +      RK 
Sbjct: 4   KSLLQEFYSELLFVENHGKLTAETYLICVQEFLDYLEKNETPLEKVTVQSLLYYTAFRKT 63

Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           +     +  + L+++R+   + VR++    N    + +PK      +    E +      
Sbjct: 64  SGRKEITLAKDLSALRIFGSFLVRKKIWIENFAHEIGKPKVSRALPKVLEVEQVDSLLAS 123

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                  G + R  +E +   GLR S++C   + ++  +   I    K      V   + 
Sbjct: 124 IDVKKPLGIRDRALYEVIYSCGLRISEACSLLIANVHFDENLILVRGKGSKERLVPFGED 183

Query: 241 FMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
               L                    F+N+    ++       FKA   K G+    H +R
Sbjct: 184 AAFWLKKWIFEIRPGFVGSRIIPEVFVNSKGNPISRKGIWKNFKAMGKKTGIEAKVHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              AT     GA    +    G   +   + YT   D  RL   +        
Sbjct: 244 HSFATHLLSGGADLRSVQELLGHSDLSTTQIYTH-IDDSRLEESHRDFFPGHK 295


>gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 316

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 26/286 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIR---SG 122
              +  +          +  +  S+ +  +Q                ++   H+R   + 
Sbjct: 12  GEFVRGFLAFLEVEKGYSPATIRSYGTDLEQFEEFLRGRKASLERPARLNRDHVRGFLAE 71

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  R+ T +S  + L+S+R  FK+ +R + +  +P   +  PK++    +    +     
Sbjct: 72  LHRRQMTKTSMGRKLSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSL 131

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                    EG +     E L  SGLR S++    +  + +++  +  + +         
Sbjct: 132 MEARVEPDPEGLRDVALAEVLYGSGLRISEAIGLDLNDVDSDVIRVTGKGSKERIVPLSD 191

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                           L      +  F  +   ++++  Q +         AG+      
Sbjct: 192 AAVARIRRYLGQRHAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGLPLDVHP 251

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   +AGA    +    G + +   + YT   D  R+ 
Sbjct: 252 HTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTH-LDMQRIM 296


>gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri
           A1501]
 gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501]
          Length = 298

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 25/286 (8%)

Query: 70  TLKW-LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
           TL   +I  Y  +      LA NSR ++ +          +          + I   +  
Sbjct: 3   TLDDPVIDRYLDALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREVILDHLAW 62

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R    +   S  +FL+ +R  +++ +R+  ++++P L V+ P+      +  ++ D++  
Sbjct: 63  RLNNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEAL 122

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +        G + R   E L   GLR ++     ++ +      ++T         V L
Sbjct: 123 LAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPL 182

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            +  +  L                    F +   ++M    F    K  A  AG+    S
Sbjct: 183 GEEALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARGAGIATGIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 243 PHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARL 287


>gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 299

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 26/282 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT--KHIR 120
            T +  I ++        SLA NS +++ S   ++ +       G       TT  +   
Sbjct: 1   MTWELAIQQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLTLQTTHLRDFL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
             +       +S  + L+++R  +++ + + Y+  +P   VERP    +     +  +  
Sbjct: 61  MYLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIE 120

Query: 179 --MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235
                     + G + R   E L  SGLR S+     +  +           K      V
Sbjct: 121 ILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLV 180

Query: 236 ELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV-- 282
            +    +K L +        F            N    KM+     +  K  A+KAG+  
Sbjct: 181 PIGKIALKYLRIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQ 240

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT   + GA    + A  G +++   E YT 
Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTH 282


>gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14]
          Length = 298

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           +I  +  +      L+ N+  S+ +   +++R       +   ++   ++   +      
Sbjct: 7   IIERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + ++++R LF++  R++    +P   +  PK      +  ++  +        
Sbjct: 67  YKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLEAPD 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +  +
Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAV 186

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|158320082|ref|YP_001512589.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140281|gb|ABW18593.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 369

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 104/363 (28%), Gaps = 44/363 (12%)

Query: 15  RTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             ++ K           G  +R  +   +        +  +        ++++      T
Sbjct: 6   VKKNHKWYIVVDSIDENGKRKRKWISGFNTQKEAEKKLPEILQQLNTNTFVDT---NNIT 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           L+  +  + +     ++A  +   +    +++    G+   ++I   HI+  V    ++ 
Sbjct: 63  LRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNSD 122

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PS+ + +   +      AV+ +++  NPC++V  P+     +    ++++Q      S
Sbjct: 123 VTPSTVLSYYRVLNTAINQAVKWQFIQYNPCVAVTPPRNTKNKMMILDQDEIQILLDK-S 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------------------- 225
           +           L  GLR  +      +++      I                       
Sbjct: 182 KDHVLYPVIVLALLCGLRRGEILGLQWENIDFFSGVIHLENNLVMANNESILKETKTSTG 241

Query: 226 --------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                             +    +  L   +           D +          F    
Sbjct: 242 RRAVDISSNVVEVLKKVKKQKMSYKLLYGSSYHDSNFVCTWEDGRPFRPDYIPKAFAKIL 301

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIK 334
             A + K   H +R   A+I   +G     +    G  ++    +TY+       +   +
Sbjct: 302 VSANLPKIRFHDLRHTHASILLKSGIHPKVVQERLGHSSISITLDTYSHLVPSLQKSAAE 361

Query: 335 NSR 337
              
Sbjct: 362 KMA 364


>gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 309

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L  LI  Y          A N+  S+    D+    +   G  D R +T   +   V + 
Sbjct: 4   LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDVRSVTETDVSEFVVAL 63

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +            PSSA + L ++R L ++A  +   + +   +V+ P       +    
Sbjct: 64  RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123

Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
           +D+                   + R   E L  +G R S++    V  L     S+    
Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    +  +    +              F+N    +++           A 
Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           KAG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290


>gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
 gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684]
          Length = 320

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 29/293 (9%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123
           +  + + L+ ++         L+ N+  ++ S   Q          D  ++    + + V
Sbjct: 11  RTGSFEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFV 70

Query: 124 ESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +             ++  + +  +R  ++   R+E +  +P   ++ P R  +  +  +
Sbjct: 71  GALAAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLS 130

Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
           ++++Q   S          + R   E +   GLR S++    +  L  +   ++      
Sbjct: 131 RDEVQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGN 190

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKA 280
               V +    +  L           +          N     +         +  A  A
Sbjct: 191 KERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTA 250

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           G+    S H +R   AT     G     L    G   +   + YT   A+R+R
Sbjct: 251 GLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLR 303


>gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           str. Al Hakam]
 gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 302

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii]
          Length = 335

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 102/299 (34%), Gaps = 36/299 (12%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRK 127
               I+++ +      +L+ NS +S++                +  ITT +IR  +E   
Sbjct: 24  FMEFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLA 83

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + +++++  + + + + +   NP L+++ PK + +     + + ++    
Sbjct: 84  SNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILE 143

Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGT 231
           +       EG +       L  SGLR S+     +  +  N               K   
Sbjct: 144 YCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNK 203

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKAT 278
              + + D  +  +      ++ F      +              M    F+I  K+ A 
Sbjct: 204 ERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVAL 263

Query: 279 KAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
             G+   + S H +R   A+   + GA    +    G   +   + YT    + ++  +
Sbjct: 264 YTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKAL 322


>gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           TA208]
 gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 96/269 (35%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +        +  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHLKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +    +++++           G + +
Sbjct: 76  ASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLLDTPKLDSPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVSKTR 284


>gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 353

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 139/337 (41%), Gaps = 22/337 (6%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +   + GK+ Y + +  G R+    P +   F+ AY+ A + +  K+    +  +   T+
Sbjct: 5   RRVKQDGKV-YRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRA-GTV 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                ++ KS  +  L+   R    ++ D I+ K G     +I   HI + ++      +
Sbjct: 63  AHAWWQFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--N 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +A   L + R    WA  +        L      +K    + W+ + +  F++ W   + 
Sbjct: 121 AARTRLKAWRKFLDWAQPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTP 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------TGTIITVELPDGFM 242
            RLAFE +L++G+R  D+ R G   +  + +    QK             +         
Sbjct: 181 QRLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEAR 240

Query: 243 KLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294
             L+     +    +           +    S WF   A KAG+     ++AHG+R    
Sbjct: 241 AYLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCC 300

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              A+ GATAH+LM   G +++++AE YTK AD+ R+
Sbjct: 301 ARLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337


>gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
 gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255]
          Length = 305

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 83/289 (28%), Gaps = 29/289 (10%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI-------TTKHIR 120
            L+  +  S    G  A  +  ++       I       G    + I         +   
Sbjct: 9   DLMENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWI 68

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175
           S       +P S  + L++++  ++W  +   V+    LS   PK +    RP       
Sbjct: 69  SHARRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAK 128

Query: 176 --KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              + +          ++       L   GLR S++                  K     
Sbjct: 129 DLIKQIDLQSEHEWINARNVAVITLLYGCGLRISEALSITFDKTPLPEVLKIIGKGNKER 188

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284
            V +       +          F+ ND+         +N        +    + G+    
Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRLFKGARGGPLNQRLIRKVMEQTRIQLGLPSTA 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT   +AG     +    G  ++   + YT   D+ RL  
Sbjct: 249 TPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYT-AVDQTRLMD 296


>gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 345

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 112/320 (35%), Gaps = 15/320 (4%)

Query: 13  KERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + R    K  Y  +    G+RI   +P        + + L         + +       +
Sbjct: 5   QVRKGKKKTTYRVQFMRDGQRISKSFP-TKKSAEKFAALLVVDDDFSHSMTNQTLNSFLV 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
              I EY +      +++  R+S+           G     K+T + +++ +     +  
Sbjct: 64  SDAIDEYLQQYKGKDVSLAQRLSY------WSAAFGSIAVGKVTRQKVKAELRGLLKRCA 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+  ++  ++  L+++ + +  +  NP   +          R  + E++++  S     
Sbjct: 118 PSTVNRYKAALGTLYRYLLHEYDIDHNPTKGIPLLTENNARTRYLSDEEIERLLSACRHS 177

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
           S  +L    LL   +G R S+      + +        + T K G    + L    +  L
Sbjct: 178 SWNQLFLLVLLAITTGARRSELLTCRWESINLKTRTIHLSTTKNGEQRLLTLTHEAVTEL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
                     F   +   M    F   +K   TKA ++    H +R   A+I A  GA+ 
Sbjct: 238 MKYRRSSGYLFPCPELPAMYFKNFDYHWKEALTKAHIHSFRFHDLRHTCASILAMNGASL 297

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+    G KT+   + Y  
Sbjct: 298 LEIKQVLGHKTIAMTQRYAH 317


>gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra]
 gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra]
          Length = 331

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 15/301 (4%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESY 98
                  +  +      +  I    K   T  ++  +  Y  S     L++ +  +++  
Sbjct: 23  PEIDQLKVREIVEEVLYKYNILPQEKALMTSDVEEKLQIYLASKKLDGLSLETLKNYQYN 82

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                          I T  +R  + +R     PSS    ++ ++  F W   +EY+  N
Sbjct: 83  LAIFADYL-RKPLATINTMDLRMFLGARCKNMKPSSMNGQISILKSFFGWLEAEEYIPKN 141

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   +++ K      +P T+E+ +  +       + +   EFL+ +G R  +  +    +
Sbjct: 142 PAAKLKQTKEPKRVRKPLTEEEAELLRQACETD-RQKALTEFLISTGCRLDEVFKVNKDN 200

Query: 217 LQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQF 269
           +  +  S     K      V        LL      +E               ++     
Sbjct: 201 INWHEMSLFVVGKGDKERKVYFNTKAKILLKKYLFSREDDDPALFVTSKRPYHRLGKRSI 260

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              FK  A  AG+ KS   H  R   AT   ++G     +    G ++    + Y + ++
Sbjct: 261 QREFKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSE 320

Query: 328 R 328
            
Sbjct: 321 E 321


>gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
 gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271]
          Length = 300

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVESR 126
           I  +       +L++++  +++S   Q              + +   +    +R+ +   
Sbjct: 7   IDRFASYQKARNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQL 66

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   +  + L ++R  F++  R+  V  +P L +  PK      R    E M++  
Sbjct: 67  ADKGLSRRTVARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHMEKLL 126

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
                    G + +L  E L  SGLR S+     ++ L      ++ +  G     V L 
Sbjct: 127 AVLDDSSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLT 186

Query: 239 DGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           +  +  L                       +M+             KA +N+    H +R
Sbjct: 187 EPAVLELRRYLDRWGRSQHQEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   D GA    +    G K +   + YT      
Sbjct: 247 HTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREK 285


>gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 298

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 96/280 (34%), Gaps = 24/280 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
           +I  +  +      L+ N+  S+ +   +++R       +   ++   ++   +      
Sbjct: 7   IIERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKD 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S  + ++++R LF++  R++    +P + +  PK      +  ++  +        
Sbjct: 67  YKQTSRARMVSAIRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQVDALLEAPD 126

Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++          V + +  +
Sbjct: 127 VNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAV 186

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 187 DWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVM 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 247 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 286


>gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 357

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 137/361 (37%), Gaps = 30/361 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHG--RRIRLP-YPHESTFIPAYMSALTGSTPKREY 60
            ++ P +V ++  R G+ ++  R      RR+ +P  P +  F   Y +A  G +P  E 
Sbjct: 2   RVQFPGYVPEK--RGGRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EV 57

Query: 61  INSPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIR--------KSGD 108
           +        +L  L+  Y +        G  +  +    +S   +           + G 
Sbjct: 58  VKQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGA 117

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +    +R  +       + A   + ++R  +    R +++  NPC+ ++R  R  
Sbjct: 118 LH-CDLPPVALRHIIAQWGARTAQADNTIKALRAAYD---RMDWLDANPCVGIKRVHRSK 173

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQ 227
            G  PW+  D+Q F     +G+  R+     L++G R SD  + G  + ++ +  +    
Sbjct: 174 GGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIEW 233

Query: 228 KTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +     +          LA          +        +   N    +   +     AG+
Sbjct: 234 QPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAGL 293

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            + S+HG+RK    I ADAGAT H++M+     +   +  YTK A R RL  +    I  
Sbjct: 294 ERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARLAGEAMASIRG 353

Query: 342 V 342
           +
Sbjct: 354 L 354


>gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L]
 gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus
           E33L]
          Length = 299

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTATPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98]
 gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98]
 gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043]
          Length = 299

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNKALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14]
 gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14]
          Length = 304

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 99/288 (34%), Gaps = 26/288 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129
              Y K     + + N+  ++      ++    +     I  K        + +  +   
Sbjct: 15  FDRYLKLE--CNYSANTLEAYRHDIRYLLEFFEEHQQNPIDAKLEDLELFATSIHEKGIG 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             S  + L+ +R  +++   + Y+  +P   +E P          T E++ + ++     
Sbjct: 73  ARSQARILSGVRSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDLS 132

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTIIT 234
             EG + +   E L   GLR S+     + +   +   ++                 I  
Sbjct: 133 KWEGQRNKAIIEVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISENAIRE 192

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           V        L+ + P  ++  F+N     +  T   I  K +A  AG+ K  S H +R  
Sbjct: 193 VNYWLMDRNLMVIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKIISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
            AT     GA    +    G + +   E YT    +D  R  +++  R
Sbjct: 253 FATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPR 300


>gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 308

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 83/300 (27%), Gaps = 22/300 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
            +        T    I  +  +      L+ N+  ++                R +    
Sbjct: 5   QVQQASASRDTSAQAIDAFCDALWLEHGLSRNTLDAYRRDLSLYCDWLAATHERTLDATR 64

Query: 119 IRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           SSA + L+  R  F WA+R+  VA +P L +   ++        
Sbjct: 65  ESDLNGYLAVRSDGKASSANRRLSVFRRYFAWALREHRVAADPTLRIRSARQPPRFPSSL 124

Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +  ++         +    + R   E +  SGLR S+        +  N   ++    G
Sbjct: 125 NEAQVEALLGAPDLDTPLGLRDRAMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKG 184

Query: 231 -TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
                V   D     L                    F+      M   QF    K  A +
Sbjct: 185 AKERLVPFGDEARGWLERYLRDARAVLLGARGADALFVTARGGAMTRQQFWNIIKRYALR 244

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           A +    S H +R   AT   + GA    +    G   +   + YT  A      +    
Sbjct: 245 ADIHVPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIH 304


>gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
 gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01]
          Length = 315

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 100/296 (33%), Gaps = 32/296 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-----------DFDYRKITTKHIRS 121
            I  + +S       +  + +++     +                 + D  ++    IR 
Sbjct: 14  WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +         S+  + L+S+R  +++  ++  VA+NP  SV  PKRK       T ++ 
Sbjct: 74  YLGFLHKKNEKSTMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEA 133

Query: 180 Q----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                        G++ R  FE L  +G+R S+     +  +  +  +++   K      
Sbjct: 134 FALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKERI 193

Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
           V +    ++ +                 E  F+N +  ++         +      G+  
Sbjct: 194 VPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLNR 253

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             S HG+R   AT   D GA    +    G  ++     YT  + DR+      + 
Sbjct: 254 PLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAH 309


>gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 23/278 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140
            LA NS  ++                     +T   I +   +R      ++A + L  +
Sbjct: 27  GLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAARHDASKATTANRRLAVL 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  ++ A+R + ++ +PCL +   K+     +  ++ +++   +        G + R   
Sbjct: 87  KRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLAAPDVSTPLGLRDRTML 146

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------- 248
           E +  SGLR ++        L  N   ++          V   +     +          
Sbjct: 147 ELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGEEARSWIERYLLEARAQ 206

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M    F +  K  A +A +    S H +R   AT   + GA 
Sbjct: 207 ILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPHTLRHAFATHLLNHGAD 266

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              +    G   +   + YT  A R RL + ++     
Sbjct: 267 LRVVQLLLGHADISTTQIYTHVA-RERLKVLHAAHHPR 303


>gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 362

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 136/365 (37%), Gaps = 24/365 (6%)

Query: 1   MTPS-LRLPP-FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           MTP+ ++LP     K R    ++ IY++R+  G    L      T   A  + + G    
Sbjct: 1   MTPAAIKLPGAHRVKMRLAGDRVGIYWYRRRGGPL--LMKFTGDTLGDALRAEIAGQQDL 58

Query: 58  REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112
            +   +P  +P     T++ +++ ++ +   + SL  ++R  +    D+++ + GD   R
Sbjct: 59  IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118

Query: 113 KIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +      + I    +    TP SA   +  ++ +  + V +E    NP L V    +  
Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------N 220
              +    E++    +  +     RLA      +G+R  D        + +         
Sbjct: 179 RADQIIEPEELTAILA--NLSPAARLAVRLSAATGMRRGDLVDLRWSEVSDVSIERAAGK 236

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             +        I         ++ +  +     TF + + K   +    +  F   A KA
Sbjct: 237 STNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAAAKA 296

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           GV KS H +R  +AT    AG    E+   +GW+     +   +  DR R+      R+ 
Sbjct: 297 GVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARVAQGIITRLE 356

Query: 341 SVVDS 345
              ++
Sbjct: 357 RRGEN 361


>gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
 gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032]
          Length = 306

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 95/281 (33%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS---GVESRK 127
           +  + +       LA N+  ++++  +   R   D D     +I  +H++        R+
Sbjct: 16  LQLFLQHLTLQRRLARNTVAAYQADLEFFFRFFSDADAILIERIDKEHVQQFFQYCHQRR 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L ++R  F++   +  +A NP   ++ PK      +  T  ++       S
Sbjct: 76  IGARSNARRLAALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLTIAEVDALLRPPS 135

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
             +    +       L  SGLR S+     V     +   ++   K      V       
Sbjct: 136 PPTPLAIRNHAMLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKERIVPFSAVAG 195

Query: 243 KLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +L                    F +N  + M   +F    +  A  AG+ K  S H +R
Sbjct: 196 TILRDYIERVRPLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGIRKAISPHVLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
              AT     GA    +    G   +   + YT   ADR++
Sbjct: 256 HSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLK 296


>gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
 gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7]
          Length = 298

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 96/286 (33%), Gaps = 26/286 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVES 125
            + +I ++   +    SLA N+  ++     ++       D      +I +  +R  +  
Sbjct: 3   WEHIIKDFLTYSRLERSLADNTLKAYSRDLHKLNNWLLANDISISPTEINSNILRDYIYE 62

Query: 126 RKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
                +  S  + L+S++V F + + ++Y   NP   +E PK   +     + +++    
Sbjct: 63  LAKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQ 227
                    G + R   E L   GLR S+     +  L                  I   
Sbjct: 123 NSIDRSTPHGERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQRFIPIG 182

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                +     +     L + P   +T F+N     +         K    KAG+ K  S
Sbjct: 183 DFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H  R   AT   + GA    +    G +++   E Y    DR  L
Sbjct: 243 PHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287


>gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC
 gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032]
          Length = 308

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 102/305 (33%), Gaps = 19/305 (6%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD 108
           A +G         S    P+ L  LI ++ +        +  +   + S    +     D
Sbjct: 2   ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 60

Query: 109 FDYRKI-TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            D   + T +           + ++  +   S++    WA +  ++  +    +  PK  
Sbjct: 61  IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 120

Query: 168 TEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            +  +   ++    F      +   E  +     E L  +G+R ++ C   +  +  +  
Sbjct: 121 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 180

Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFK 274
            ++   K      V   +   K L      ++    +          Q++NA Q      
Sbjct: 181 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 240

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A   GV+  S H +R  +AT   D GA   ++    G  ++   + YT  +++  L  
Sbjct: 241 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLL-- 298

Query: 334 KNSRR 338
           +   +
Sbjct: 299 EAFNK 303


>gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
 gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus
           G9241]
          Length = 302

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 294

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 90/274 (32%), Gaps = 24/274 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESRKHTPSSAIQFL 137
             L+ N+ +++++   + I  +              IT        E     P S  + +
Sbjct: 19  KGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLWEMKTEGL--KPRSIFRVI 76

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
            S+R  +K+   ++    NP L +  P          T +++    +  ++      + +
Sbjct: 77  ESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSINDDDEMHIRNK 136

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +GLR S+        +      ++          V   +     +++    +
Sbjct: 137 AMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVPFGNKAKFFISIYLKKR 196

Query: 253 ETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 ND   ++          F    K  A   G+NK  + H +R   A+     GA 
Sbjct: 197 RPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGAD 256

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              +    G  ++   + YT   D  R+  ++ +
Sbjct: 257 IRFVQEMLGHASITTTQIYTH-LDEDRIVQQHKK 289


>gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1]
 gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3]
 gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96]
 gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6]
 gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11]
 gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104]
 gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22]
 gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200]
 gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1]
 gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3]
 gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96]
 gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6]
 gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG]
 gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11]
 gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712]
 gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613]
 gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76]
 gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11]
 gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411]
 gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134]
 gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512]
 gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516]
 gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137]
 gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000]
 gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017]
 gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141]
 gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244]
 gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012]
 gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312]
 gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645]
 gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342]
 gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346]
 gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B]
 gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A]
 gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62]
 gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1]
 gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYIFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
 gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA]
          Length = 295

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             LA NS  S+     + +    +    D   I   H+   +   K +     S  + L+
Sbjct: 16  KGLARNSVESYARDLSRYLGYVEQHAGGDPAAIRPLHVADFLAHLKESGLGARSRARALS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R+  ++ + + Y   NP   +E P+   +  +  T  +++   +          + R 
Sbjct: 76  AVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+      + +  +    +   K      V + +     + +      
Sbjct: 136 MLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSAR 195

Query: 254 TFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                  +            M    F    K ++ +AG+    S H +R   AT   + G
Sbjct: 196 IQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    + A  G   +   + YT    R RL
Sbjct: 256 ADLRSVQAMLGHADLSTTQIYTHVT-RERL 284


>gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188]
 gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188]
 gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635]
 gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 88/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  ++++++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFSLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
 gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873]
          Length = 292

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 20/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVESR 126
           +  +S+Y +      L+ N+  +++    +  +         + +  +        ++  
Sbjct: 2   EKFLSKYIEDMLKKELSKNTIEAYKRDLLKFAKFLNKRHENILESDMVSIMAYVQILKKE 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           +   SS I+ L ++R  +K+ ++      NP ++ E PK K       T +++ +F    
Sbjct: 62  RKADSSIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILTVDEVDKFLSAP 121

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241
                +G + +   E +  +G++ S+  +  +  +   +  IK +        + +    
Sbjct: 122 DCSEYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGSYA 181

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +  L      ++          F N    KM    F    K  A  A +NK    + +R 
Sbjct: 182 VNCLNEYLKVRDKMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A      GA    +    G  T+   + Y+  + + ++
Sbjct: 242 SFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKI 281


>gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 104/296 (35%), Gaps = 36/296 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127
            +  EY  S     ++ N+  S+ S  + +    G  + R +       +     + SR 
Sbjct: 8   DVFLEYLVS--GRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           ++P++  + + ++R L+ +      +  +P  +++  K      +  T +++ +      
Sbjct: 66  YSPATISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLRAAG 125

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------ 230
                EG +       L  SG+R S+    G   +++ +   ++                
Sbjct: 126 SDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERL 185

Query: 231 --------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                     I   L      ++      +  F      Q ++  +     KA A  AGV
Sbjct: 186 ILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGV 245

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           +    S H +R   AT   + G+    +    G  ++   + YT  A DR++  ++
Sbjct: 246 DPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 301


>gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 342

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 114/338 (33%), Gaps = 13/338 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +H    YY       +  L   +          AL  S  +++  +  + +  T+    +
Sbjct: 5   KHSNGTYYVIIDRNHKRSLGTKN-KAEAERIFKALKKSDFQKKIADLEKTE--TISEFFA 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           +  +   +      +  S     +      G+     +T K +      R    +  +S 
Sbjct: 62  DCLEDYKYKK-EKATYTSMSYSLNAFEGFIGEKLLNGVTKKDLSDFTTHRLKAGYAKTSI 120

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  F  AV  E +A NP    ++ K      +  T +D+ +F +   +    R
Sbjct: 121 NIDIRNIKAAFSKAVEWEKLAQNPLNGFKQLKIDKNLPKFLTFDDLDKFANILGDNP-LR 179

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            AF F + +G R S++       +        I+  K      + + D   +LL      
Sbjct: 180 HAFFFYVLTGCRRSEALVLTWDDIDFTRMVVHIRKTKNHEARDIPICDSLYELLNGITPK 239

Query: 252 KET-FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
           +   F        ++    +   K   T+AG      H +R   A++ A +G T   +  
Sbjct: 240 QGYLFPGKIKGTHLDKDTMTHNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRD 299

Query: 310 TYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
             G   +   E Y    AD ++  +   +   S  D D
Sbjct: 300 LLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDKD 337


>gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 26/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES 125
           LI ++R       SL+ NS  ++E    + ++         G    +    +     +  
Sbjct: 6   LIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITE 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  S  + L+ ++  F++ + +E    +P   ++ PK   +     +  +++Q    
Sbjct: 66  LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+     + +L  +  F     K      V +   
Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185

Query: 241 FMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
             K + M                   F+N    K++        K  A K G+ K+   H
Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             R   AT   + GA    +    G +++   E YT 
Sbjct: 246 TFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282


>gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4]
          Length = 312

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 99/325 (30%), Gaps = 40/325 (12%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
              A+    PK   ++            ++E+R++     LA  +R ++          +
Sbjct: 3   RDRAVQQRQPKALAVDDEPA-------YMTEFRQAMLARGLATRTRNAYVRDLRS-CELT 54

Query: 107 GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                 +   + +   +        TP +  + L+S+R  + W +       NPC  ++ 
Sbjct: 55  NHAALTRWQPEDVLCCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKS 114

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           PK      +   + D+    +        G + +   E L   GLR S+     ++ +  
Sbjct: 115 PKLGRPLPKDLAEADVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNL 174

Query: 220 NIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMN 265
           N      T K      V L +     L                    +  F+      M 
Sbjct: 175 NSGWLQITGKGNKTRLVPLGEYASDALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMT 234

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F    K  A  A ++K  S H +R   AT   + GA    +    G   +   + YT
Sbjct: 235 RQNFWYLLKKYAKVASIDKALSPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYT 294

Query: 324 KGADRIRLGIKNSRRISSVVDSDDP 348
                       + R+  +     P
Sbjct: 295 HV---------ATARLQKLHAEHHP 310


>gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
 gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3]
          Length = 302

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +        G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDMETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37]
 gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37]
          Length = 384

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 102/350 (29%), Gaps = 21/350 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60
           P         G+  Y  +   GRR   I L      T   A   A+       +      
Sbjct: 27  PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPSTVLTCEQARNRAISIFAAARNGEDPAA 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
                +K  T+K L   + K      +  ++   +    ++  +   G      IT   +
Sbjct: 87  ERDAGRKAITVKELAERFDKEHIAIRVKASTAKEYRRNLERFILPALGQLTVTGITRADV 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
                  +H P  A + L  +  +F  A                 K   E    +     
Sbjct: 147 AKFHHDLRHIPYQANRRLEVVSKMFGLAEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                E +++ ++   E     LA   L+ +G R ++       H+      ++   + +
Sbjct: 207 LRRIGEVLREMEAEGIELPSAILAARLLILTGCRLNEIMTLKWAHVDLAERVLRLPDSKS 266

Query: 232 IITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288
              V       + LL       E  ++          +    +++    +AGV +   H 
Sbjct: 267 GAKVVHLGQPVVDLLRDAQHIDENPWVITGILPGKRLSDLQPFWQRVRARAGVKDVRIHD 326

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           +R   A+ +  +G     +    G   V     Y    A+ +R+      
Sbjct: 327 LRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVA 376


>gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868]
 gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868]
 gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD]
          Length = 303

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I ++  +  +  +L+ N+  ++     ++      K  D     I+ + I+  +      
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  ++++S++  FK+    E  A NP   +E PK         + E+++      
Sbjct: 67  YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLIEAI 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230
                 G +     E L   GLR S+     + +L      I               +  
Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             +  +        + + P   +  F+N    K+      I  K  A +A + K  S H 
Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            R   AT     GA    +    G  ++   E YT   + 
Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNE 286


>gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5]
 gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1]
 gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5]
 gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1]
 gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1]
 gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248]
 gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027]
          Length = 299

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula
           baltica WH47]
          Length = 317

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 23/276 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            +  E+         LA N+  ++     + +          +T   +   V S      
Sbjct: 26  AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTITELSDFVASLHGEGL 85

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + + ++R  FK+   +     NP   +   K         +  +++ F S   +
Sbjct: 86  APASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKK 145

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E L  +G R S+ C   V+ L  +  +++          V +    ++
Sbjct: 146 SDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIR 205

Query: 244 LLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGV--NKSAHGV 289
            + +          + +  +++              Q     K  A +AG+    S H +
Sbjct: 206 SIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEISPHSL 265

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT     GA   ++    G  ++   + YT  
Sbjct: 266 RHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHV 301


>gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 308

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 26/302 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH 118
           ++       L  L+  +        +L+ N+  ++ +      R +         +T   
Sbjct: 3   DATAAATPDLDALLRRFLSDLSVTRNLSENTIRAYGTDLAAYARWTRRQGVDPLDVTHSQ 62

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R+ +      +++  +  + L+++R L++W VR+ Y   +   ++  PK      +  T
Sbjct: 63  LRAYLGELVRARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMT 122

Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
             D+ Q      E    G + R   E L  SG R S+  R  V  +      +    K G
Sbjct: 123 DPDVCQLLGACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGG 182

Query: 231 TIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKAT 278
               V L D  +  L    +                 F++   ++M+A      F+ +  
Sbjct: 183 KERIVPLYDMCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVR 242

Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
            AG++   + H +R   AT     GA    +    G  ++   + YT    DR++   + 
Sbjct: 243 LAGLDADITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQ 302

Query: 336 SR 337
           + 
Sbjct: 303 AH 304


>gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
 gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN]
 gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN]
 gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1]
 gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16]
          Length = 302

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 107/303 (35%), Gaps = 26/303 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV 123
            T K L+ +++    +    +  +  ++ +   Q         G   + +++++ +   +
Sbjct: 1   MTKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFI 60

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S        +S  + L+S++ L+K+  R+  VA++P  +V   ++  +    + + +++
Sbjct: 61  TSLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIK 120

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +     S       + +  FE    +G+R S+     +Q +  ++  I     G      
Sbjct: 121 KVLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYV 180

Query: 237 LPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
               + K            L          F++N   ++ +       +    K G+  N
Sbjct: 181 PFGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R   AT   + GA    +    G +++   + YT      RL     +      
Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVT-MERLQKDYEKFFPRNE 299

Query: 344 DSD 346
             D
Sbjct: 300 GKD 302


>gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 307

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 105/302 (34%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123
             LI +++   ++  + + N+  S+ +  D+  +         G    +    +     +
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFSGWDKVKSRDVEIFLQNL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++  + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +  ++  I    K      V   
Sbjct: 126 DSLVGHDRLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              +  L                     F+NN  QK+         +    KAGV     
Sbjct: 186 KDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str.
           Madrid E]
 gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD
 gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 102/297 (34%), Gaps = 36/297 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             I+++ +      +L+ NS +S++                +  ITT +IR  +E     
Sbjct: 2   EFIAQFLEMLLAERALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  + + + + +   NP L+++ PK + +     + + ++    + 
Sbjct: 62  NLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +  N               K     
Sbjct: 122 SKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKA 280
            + + D  +  +      ++ F      +              M    F+I  K+ A   
Sbjct: 182 VIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYT 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           G+   + S H +R   A+   + GA    +    G   +   + YT    + ++  +
Sbjct: 242 GLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKAL 298


>gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
 gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium
           HTCC2150]
          Length = 306

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 80/289 (27%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  ++       +           G    + +  + IRS 
Sbjct: 9   RDALQNWLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSW 68

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   + +  SA    + L++++  ++W    E       LS   PK + +  RP   +  
Sbjct: 69  MAFERGSGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAA 128

Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +               G +       L   GLR S++                  K G  
Sbjct: 129 RAMIDTVPLQSEKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPDVLRILGKGGKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + +             +            N             + G+  +
Sbjct: 189 RIVPVIPAAKRAVDEYIRACPHPIEADSPLFRGIRGGALNPRIIQGVVAKARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 249 ATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 296


>gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
 gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter
           desulfuricans SSM1]
          Length = 293

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 28/274 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHTP 130
           L+ EY        L+ N+  ++ S     +       Y    + T       +  + ++ 
Sbjct: 12  LVEEY--------LSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTVISYIKNLIKKSYSI 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
            S ++ ++S+ V + + ++++ +  NP L +++PK+  +      ++++ +         
Sbjct: 64  ESILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILDTVDKST 123

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245
             G +  +    L  SG+R S+     V +       I+ +  G     V +    ++ L
Sbjct: 124 PHGFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIKGKGGKERFVPIHKKLIEEL 183

Query: 246 AMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                 +  +F+          N    K++        +  A  AG+ K  S H  R   
Sbjct: 184 NKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKKKVSPHVFRHTF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT     GA    +    G  ++   E YT+  D
Sbjct: 244 ATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277


>gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
 gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA]
 gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1]
          Length = 297

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 25/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127
             L  EY          +  +  ++ +      Q + K G      +  + I +      
Sbjct: 2   DELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLF 61

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+  + ++ ++   ++ VR+ Y   NP  +++ PK         +   +    S
Sbjct: 62  GRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLS 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239
                     + +   E L   GLR S+         +    +     K        +  
Sbjct: 122 RPLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISG 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSA 286
             ++ L           + +  +            ++                GV N   
Sbjct: 182 AALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT     GA    +    G   +   + YT  
Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHV 280


>gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 282

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 14/269 (5%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +  +         L+ ++  S++   +Q+       D  +I+T+ +R+ V S        
Sbjct: 2   VDFFLSHLQHERRLSPHTIKSYKLDLEQLHTFLNGIDPSQISTEDLRAWVVSLSEDGLEN 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185
            S  + L S R  F +  R++ ++ NP   ++  K          + + Q        + 
Sbjct: 62  RSINRKLASARAFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQLEFTE 121

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFM 242
             EG + +L  E L  +G+R S+     V+ L+N+       +++     +   L D   
Sbjct: 122 DFEGLRDKLLLELLYGTGIRLSELISIQVKDLENDRVKVLGKRSKYRIIPLHRTLQDLIK 181

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           + L + P       + +  + +         K    +       S H +R   AT   + 
Sbjct: 182 RYLELHPKNDTHLLLTDKGEALYPVFVQRKVKHYLQQISTLTKTSPHVLRHTFATHLLNR 241

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA  + +    G   +   + YT  + + 
Sbjct: 242 GADLNAIKELLGHANLSATQIYTHNSIQK 270


>gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
 gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKELRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
 gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44]
          Length = 302

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYVEELEKLF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +        G + +   E +  +G+R S+        +  ++ +I  T K      +   
Sbjct: 126 EVSDVKTPLGQRNQALLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                   +  F+N     +              KA +    
Sbjct: 186 SYAQDALTTYIENGRKQLAKKTEEHSQMVFLNAKGAPLTDRGVRYILNDLIKKASLTMKI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 401

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 97/357 (27%), Gaps = 47/357 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +     Y F  G  +G+R R+          A               +  +     ++
Sbjct: 23  RKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQAEAPLRQALQKYENDGSVAKLTNMNVQ 82

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                + ++     L  N++I++ +     II K G+F  R I    +++ V     T  
Sbjct: 83  QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 141

Query: 132 SAIQFLTSM---------RVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            A   +  +         + ++ +          I      +  +   + ++  T    +
Sbjct: 142 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 201

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
           Q  S     +   +  +    +G+R  + C     ++  N  +I+ ++            
Sbjct: 202 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWTNVDLNGHTIEVKQAMMQESKGKFSI 261

Query: 232 ----------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                     +                       +   +     
Sbjct: 262 VTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFVCTKENGIPVTPNTI 321

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                    + G   + H +R   AT+  + GA   ++ A  G   +     TY+  
Sbjct: 322 KYQCDRIQKELGFPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHV 378


>gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
 gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803]
          Length = 302

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
            L   Y +     + +  +  S+++  +  ++     G   +  +T   +R  + +    
Sbjct: 11  QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDE 68

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
                S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     +  
Sbjct: 69  KLARKSVARKVSSLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEELEELFEVS 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
            +    G + +   E +  +G+R S+     +  +   + +I    K      +      
Sbjct: 129 DTETPLGQRNQALLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 188

Query: 242 MKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              L                      F+N     + +            KA +    S H
Sbjct: 189 QDALITYIENGRKQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPH 248

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 249 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
 gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 111/306 (36%), Gaps = 25/306 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           ++   T   ++ +Y++      SL+ N+  ++ +  D+++      + +   +  +++  
Sbjct: 2   KRTEKT-DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E+
Sbjct: 61  FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEE 120

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTII 233
           +         G+    + R   E L   GLR S+ C   +  L     F     K     
Sbjct: 121 IDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180

Query: 234 TVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
            V +    +K + +    +             FI+N  + ++        K  A + G+ 
Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLK 240

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   AT   + GA    +    G +++   E YT   DR  L  +       
Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299

Query: 342 VVDSDD 347
            +   +
Sbjct: 300 NIKFRE 305


>gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
 gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608]
          Length = 310

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           K ++  +R+        + N+  ++    D+++R           +T + +         
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTVDAYLHDVDKLLRYLAGEQVPVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L      ++          V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L      +    I          N     +  T   I  K  A +AG+ K+   H 
Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2]
 gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
 gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2]
 gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860]
 gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470]
          Length = 299

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++             G+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
 gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC
           33323]
 gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1]
          Length = 307

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 105/302 (34%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123
             LI +++   ++  + + N+  S+ +  D+  +         G    +    +     +
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGGWDKVKSRDVEIFLQSL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            ++  + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +  ++  I    K      V   
Sbjct: 126 DSLAGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              +  L                     F+NN  QK+         +    KAGV     
Sbjct: 186 KDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400]
          Length = 295

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 92/270 (34%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             LA NS  S+     + +    +    D   I   H+   +   K +     S  + L+
Sbjct: 16  KGLARNSVESYARDLSRYLGYVEQHAGGDPAAIRPLHVADFLAHLKESGLGARSRARALS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R+  ++ + + Y   NP   +E P+   +  +  T  +++   +          + R 
Sbjct: 76  AVRMFHRFLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+      + +  +    +   K      V + +     + +      
Sbjct: 136 MLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSAR 195

Query: 254 TFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           T      +            M    F    K ++ +AG+    S H +R   AT   + G
Sbjct: 196 TQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENG 255

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    + A  G   +   + YT    R RL
Sbjct: 256 ADLRSVQAMLGHADLSTTQIYTHVT-RERL 284


>gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
 gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1]
          Length = 339

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 96/319 (30%), Gaps = 62/319 (19%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----------------- 109
             ++   I  + +        + ++  S++    + +  +G                   
Sbjct: 2   DGSVGRHIDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGR 61

Query: 110 ---------------DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEY 152
                          D  ++    +R+ V S   ++  SS  + L+++R  F++  +   
Sbjct: 62  AAAAPLPAEDPAAELDVAQLDATRVRAFVYSLHGRNKSSSVARKLSALRSFFRFLRKNGI 121

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSD 208
           +  +P  ++  PK +       + +++         G +     R   E L  +GLR S+
Sbjct: 122 INDDPAAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSE 181

Query: 209 SCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262
                +  L      ++          V +    +  +      ++        Q     
Sbjct: 182 LAGLDLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGK 241

Query: 263 ---------------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                          ++ +       K  A +AG+    S H +R   AT   + GA   
Sbjct: 242 KARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLR 301

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 302 VVQELLGHASLSTTQRYTH 320


>gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++++       + N+   +  +   ++R         IT   +             + 
Sbjct: 8   LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-KKRAEDITPGDLNKYKMYLSTKRKYSK 66

Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             L     ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 67  NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPKQMPKYLSEDEVKRLIEASSENP 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMT 248
           +       L YSGLR S+ C   ++ +  N     +++ K      V +    ++ L   
Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIEALQNY 180

Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
              +E             K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 301

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 95/294 (32%), Gaps = 30/294 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121
            +  I E+        + ++N+   +                      IT     + I+ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLNDITKTHVRRFIQH 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176
            +      P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +     K
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +       +  L F+ L  +G+R S+      + +  +  +I+    G    + 
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284
                +  L  + +G    +  +  Q +         N       FK    KAG+     
Sbjct: 183 PLHPMVVPLIKSYMGSLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           S H +R   AT+             +    G +++   + YT    ++ +  I+
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296


>gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
 gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10]
          Length = 296

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
             L+  +  ++          +    G F ++ +  KH+   ++    +    SS  + L
Sbjct: 16  KGLSTKTIEAYAGDLSGYLTFLQDTYGIFSWKDVNKKHVLHYLQWMNQSGKASSSISRTL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193
           ++++ L  + + ++ +  NP + +ERP++     +     +++   S          +  
Sbjct: 76  SAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTLAISEVEALFSAAEGNRPIDIRTV 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL------- 245
              E L  +G+R S+ C   ++ L   +  +K      T   + L +   + +       
Sbjct: 136 AMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGEFATEAIRIYLDHA 195

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               M        F+N+   +++   F    ++ ATKAG+ K  S H +R   AT   + 
Sbjct: 196 RPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT  +   
Sbjct: 256 GADLRSVQEMLGHSDISTTQIYTHISQTR 284


>gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1]
 gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1]
          Length = 379

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 114/361 (31%), Gaps = 29/361 (8%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGST-----P 56
           R  P +  E    G   Y++R  +     R  +L    E +   A   A   ++      
Sbjct: 24  RKAPGLIVEVRPTGSATYFYRYRNHAGLTRSCKLARFREISLKDARSLAREKASIVASGH 83

Query: 57  KREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +   + R+   TLK    E Y   A     +  +     ++    +   G      I 
Sbjct: 84  DPQEEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNH--HALPTLGTKKMSDIN 141

Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEG 170
              + + +   K     PS+  + LT +  +FK         V  NP   ++RP    + 
Sbjct: 142 RNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIKRPVIDNKI 201

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               T+E++ +        + P +       + +G R ++   A  +    +       K
Sbjct: 202 ENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLDNKIWNIPK 261

Query: 229 ----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
               +  +I  E     +K L         F      +          FKA    +G++ 
Sbjct: 262 GKNGSRKVILAEKAVQMVKELPKQEGTDLLFPQPGTDKP--YQCIQKPFKAVLRDSGIDE 319

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               H +R   A++    G   +E+    G   +     Y   + +      +S R++  
Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQG--LRNHSNRLAET 377

Query: 343 V 343
           +
Sbjct: 378 I 378


>gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
 gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264]
          Length = 315

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 88/263 (33%), Gaps = 17/263 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142
              + N+   +E                 I  + I   +E  SR+   +S ++ + S+R 
Sbjct: 45  KGSSKNTVAGYERDLKIFFDYI-QKSATDIKEEDIYEYIEEISRELKRNSVLRKIASIRT 103

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSEGSQPRLAFEFL 199
            +K+    + V  +P   ++  KR+            + +        EG + RL  +FL
Sbjct: 104 FYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTPEGMRDRLIIKFL 163

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTIITVELPDGFMKLLAMTPIGKE 253
           + +G R S+     ++ ++N  +          +     I   L +     ++      +
Sbjct: 164 IATGARVSEILNLNIKDVENQGYEFIKVLGKGSKYRIVPIYESLENEIKDYISNYRPKLK 223

Query: 254 TFFINNDKQKMNAT-QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
               +           F    K  A  AG+ K+   H  R   AT+    GA    +   
Sbjct: 224 GSESSFKLFPDTRRENFWKRLKKTAKDAGIEKNVYPHIFRHSVATVLLSNGADIRIVQEI 283

Query: 311 YGWKTVDQAETYTKG--ADRIRL 331
            G   +   E YT    +D  R+
Sbjct: 284 LGHANISTTEIYTHVEKSDLKRI 306


>gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 297

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 80/270 (29%), Gaps = 19/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG----VESRK 127
           +  +        +L+  +  S++      I    +   D + +  + +           +
Sbjct: 8   LDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLTLTAGQEE 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++P+S  +  +S+R   K+   Q     +    +  PK      +  T+E++       +
Sbjct: 68  YSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDSVFESAA 127

Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
            G    +     E +   GLR S++    +  +       +   K      V L     +
Sbjct: 128 NGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLVPLGSKAKE 187

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            L               +   +N   + M+        +          S H  R   AT
Sbjct: 188 NLRAWIEEGRPLTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFAT 247

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
              +AG     L    G   +   + YT  
Sbjct: 248 HCLEAGMDLRVLQELLGHADISTTQIYTHV 277


>gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 93/295 (31%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--- 128
           +  Y+        L+ NS  ++ +  D++          Y  +T   ++  V        
Sbjct: 8   VERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQFVARLHDIGI 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
            P S  + ++ ++  +++     Y+  +P   +E PK   +     T  ++         
Sbjct: 68  HPRSQARIISGIKSFYRFLFLDNYITTDPTELLESPKIGLKLPEVLTVNEINSILDTIDL 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243
              EG + R   E L   GLR S+        +  +  F     K      V + +  +K
Sbjct: 128 TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETAIK 187

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +      +    +    + +          +        K +   AG+ K  S H  R 
Sbjct: 188 EIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTFRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             AT   + GA    +    G + +   E YT   DR  L  +           D
Sbjct: 248 SFATHLLEGGANLLAIQEMLGHEKITTTEIYTH-IDRQFLRKEILEHHPRSKPRD 301


>gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 327

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 95/326 (29%), Gaps = 51/326 (15%)

Query: 59  EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------- 108
               +P      +   I   + +      L+ N+  ++        R   D         
Sbjct: 2   PDSRAPLASQADIDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPEAYAREMA 57

Query: 109 -----------------FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVR 149
                                +     I +    R      ++A + L ++R  + WA+R
Sbjct: 58  DRYGDAASAHALPAGPAKALAEAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALR 117

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205
           +   A +PCL++   K+     +  +++ +             G + R   E L  +GLR
Sbjct: 118 EHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNEPRGLRDRAMLEMLYATGLR 177

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF-------- 255
            S+        +  N   ++    K G    V L       +                  
Sbjct: 178 VSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSD 237

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             FI    + M+   F    K  A  AGV    S H +R   AT   + GA    +    
Sbjct: 238 ALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLL 297

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337
           G   +   + YT  A      +  + 
Sbjct: 298 GHADISTTQIYTHVARERLKALHAAH 323


>gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str.
           A2012]
          Length = 302

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 378

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 103/359 (28%), Gaps = 43/359 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  +  YYF      G R ++      T   A  +     +   E         T +K
Sbjct: 6   RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + +     +L  N+  ++       I    G      ++   +++ + +      
Sbjct: 66  QYLDFWMEEYVKLNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGY 125

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           S        + ++     AV    +     +   +  +  E        +  + ED    
Sbjct: 126 SKKTMTITHSVLKNALNMAVYPWGLIKQNPMLYVKIPKYEERPTTKKDLKIISLEDFDHM 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKT 226
                EG    +      Y+G+R  + C     ++  +                      
Sbjct: 186 LEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGAWVYGTP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
           + + +  T+ +    + +L      +    +   K  +                +     
Sbjct: 246 KTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEYGELVTPSVVKWN 305

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +  +    ++ + H +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 306 TRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHVTDKMR 364


>gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 445

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 101/353 (28%), Gaps = 24/353 (6%)

Query: 6   RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57
           R    +  E    G + YY R    +   R I+L    + T   A               
Sbjct: 28  RRVKGLVLEVRTSGGMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGI 87

Query: 58  -REYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                 + ++   T    +   Y   A     +  +  +       +  + G     +IT
Sbjct: 88  DPLAERAVKRLVPTFGDFVRERYLPFAQANKRSWKTDETLART--HLTPQLGTMHMDEIT 145

Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRK 167
            + +   +         P+S  + L  +R +F  A R   +          + + +   +
Sbjct: 146 IEDVLSLQQIGLKAGAAPASINRRLILLRYMFNLAWRDWKIAGVTGNPTHGVRLLKENNQ 205

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            E      +  +       S+    +    FLL +G R ++   A  + +       +  
Sbjct: 206 KERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVDLIKGMWRIP 265

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN- 283
           +T +     +P        +  +   +                     + +   KAG+  
Sbjct: 266 QTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGKPYVHVWYAWNSARVKAGLPD 325

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              H +R   A++  + G + +E+    G   +   + Y        L   N 
Sbjct: 326 VRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 312

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRK 127
           +  L+ ++     +  +L   +  ++     Q              +    ++  +    
Sbjct: 3   IDKLLKDFFFHCQFEKNLNPKTLNAYTIDIKQFKAFNNIETLSINDVDKDVLKEYIRHLY 62

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK 183
                P S  + L +++  F +   +E + ++P   +    K +    +     ++++  
Sbjct: 63  SIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKLF 122

Query: 184 SFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227
            +  +                 +     E L  +GLR S+       ++  +  +I+   
Sbjct: 123 KYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRILG 182

Query: 228 KTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATK 279
           K     T+++ D  +KL+               + FFIN    K++    S   K     
Sbjct: 183 KGNKERTIQICDQEVKLILKEYFSLFKDEIYKNKCFFINRLGNKLSEQSISNMIKKYQKN 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A V  + + H  R   AT+  + G     +    G  ++   + YT
Sbjct: 243 ANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYT 288


>gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37]
 gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37]
          Length = 298

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 91/283 (32%), Gaps = 27/283 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESR 126
           I ++  S      L+ N+  S+      +                  +           +
Sbjct: 6   IDQFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCRLSGEK 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++  +S  + ++++R  +++  R++    +P   +E PK      +  ++ ++    S  
Sbjct: 66  EYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLSSP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237
                   + +   E L  +GLR S+     ++ +      ++      +     +  E 
Sbjct: 126 DLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVPLGEEA 185

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK---SAHG 288
                + +            ++          M    F    K  A   G++K   S H 
Sbjct: 186 IYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEALSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLK 288


>gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           A1055]
 gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI]
 gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99]
 gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820]
 gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102]
 gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342]
 gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201]
 gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 309

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 87/279 (31%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
           ++  + +       L+ N+  S+ +     +            +T + +   +   +   
Sbjct: 17  IVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRG 76

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L ++R LF++   Q  ++ NPC  +E PK         +++++ +  +   
Sbjct: 77  LSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPD 136

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+                    K     TV +     
Sbjct: 137 LKEKLGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAA 196

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           + L          F   +                     +     AG+++  S H  R  
Sbjct: 197 RFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVADAGIHRQISPHTFRHS 256

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT   + GA    +    G   +   E YT   +  RL
Sbjct: 257 FATHLLEGGADLRTVQLLLGHADIAATEIYTH-VETERL 294


>gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
 gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str.
           Hartford]
          Length = 306

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                   ITT ++R  +E   + 
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITTANVRDWIEYLANN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + +   NP L+V+ PK + +     + + ++    + 
Sbjct: 62  DLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  I        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRDIFVNKAKPKNLIYLFPSSALTGYMTRQNFAILLKSAALYA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 NLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTH 288


>gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 275

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 87/274 (31%), Gaps = 13/274 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
           ++EY       + AV +   ++   ++ +R+      + +T++++R  +        P++
Sbjct: 1   MNEYLLCLKLENKAVATITKYKWILERFLREC-KVPLKDMTSENVREWINDFSIDKKPNT 59

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQ 191
                 ++   F++   +EY+         RP+          + +  +          +
Sbjct: 60  IALVHATLSTFFQFCFDEEYIERVIIKKRWRPQLPKSLPNYLDEYEFSRIKLISEQLSIR 119

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250
            R    FLL SG R S+     ++ +  +  +     K   I T+         L     
Sbjct: 120 DRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYLQ 179

Query: 251 GKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +                          K    +AG+ K    H  R   AT     GA 
Sbjct: 180 ARTCDPKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLLARGAD 239

Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
              +    G   ++    Y +  ++  RL  +N 
Sbjct: 240 LQFIADEMGHADLNTTRIYAQIPSEDKRLKYQNI 273


>gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 390

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 116/378 (30%), Gaps = 54/378 (14%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + R+G         R   G+ IR  +  ++      +  +     K       + +  TL
Sbjct: 16  KYRNGLWRGSITTGRNTEGKLIRKQFYGKTK--REVLDKMNDYRDKSSRGLIAKDEKITL 73

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126
           +   + +        L  ++   +  ++   I+    G    + +T   I++   S    
Sbjct: 74  EEWYNIWLFQFKANELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSLIKN 133

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFKS 184
             TP +      +++    +A R  Y+ IN C +V  PK   +    +       Q+   
Sbjct: 134 GKTPYTVKMLHKALKSSLSYAKRINYIGINCCDNVIPPKVINKDDDKFKVFTLEEQKKFM 193

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
              +  + RL F   L +G+R  +        +  +  ++K  K+ +             
Sbjct: 194 NVIKDHKYRLMFILALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFL 253

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------A 266
                         V +P   +K L      ++ +  N  +   +               
Sbjct: 254 LEETTPKTRSSIREVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALGRYILP 313

Query: 267 TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              S  +        +  +  H +R   AT   + G     +    G  ++   A+ YT 
Sbjct: 314 DTLSKAYLKVLKDNNIPHTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTH 373

Query: 325 GADRIRLGIKNSRRISSV 342
                +  I    +++ +
Sbjct: 374 VIGNEK--ISAVEKLNDL 389


>gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 391

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 109/387 (28%), Gaps = 62/387 (16%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            G   +           G+RI+      +         L     + E            K
Sbjct: 8   RGNNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYIDPSKMKFK 67

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             + E+        L   +  +++S  +  +I   G+    +    +I + ++       
Sbjct: 68  DFVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNA 127

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    + SS       +R +F  A     +  NP  SV+ PK   E    +TK+++
Sbjct: 128 RKDGKEGGLSSSSIKYHYRVLRNIFSRAKEWIIIKNNPVESVKPPKVTQEKTSVYTKDEV 187

Query: 180 QQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------- 218
            +      +E    +L     L +GLR  +        +                     
Sbjct: 188 IELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKEKGY 247

Query: 219 -------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                         +I     ++       +  +                F + + +   
Sbjct: 248 VLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGKPFY 307

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE---- 320
            T    W++    + G      H +R  +AT+  + G  A  + A  G   +        
Sbjct: 308 PTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNIYG 367

Query: 321 TYTKGADRIRLGIKNSRRISSVVDSDD 347
            Y + AD        + +++S+  + +
Sbjct: 368 HYLREADEK-----AANKLNSIFGNTN 389


>gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 298

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   DAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-ELNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEVLFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132]
 gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132]
          Length = 296

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---S 125
               I  ++        LA NS  S+      +     G      +   H+ + +E    
Sbjct: 3   WPEAIRAFKNYLKLERGLAPNSVESYLRDLGALASFLDGKVAPNTVEEDHLYAFIETISE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
              + S+  + L+ ++  F++   ++    +P   +  PK   +       ++++     
Sbjct: 63  MGLSSSTQARMLSGIKAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVKEVEALLEG 122

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDG 240
                 EG++ R   E L  SGLR S+     +        +     K      V +   
Sbjct: 123 IDLSTPEGTRNRAMLEVLYSSGLRVSEVVNLQISRCFFEEGYLQVRGKGSKTRLVPIGKQ 182

Query: 241 FMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            +             L +    ++  F+N     ++        K  A  AG+ K+   H
Sbjct: 183 AIHYTEIYKTLVRPSLDIKKGYEDHLFLNRRGAALSRVMVFYVVKNAAEAAGIQKTISPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R   AT   + GA    +    G +++   E YT   DR 
Sbjct: 243 TLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTH-LDRA 283


>gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
 gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603]
          Length = 310

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 33/292 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHI-------RS 121
           + ++  Y +       ++ N+  ++     + +      +     +T   I       R 
Sbjct: 7   RDIVQGYLQHLLVERGVSPNTLAAYRRDLARYLDYLSHRELSLHSVTQSTIDDFLVALRE 66

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           G   +  + SS  + L S+R L ++A  +  VA +P +SV  PK         +  D+++
Sbjct: 67  GSLGQSLSQSSVSRHLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDVER 126

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT 234
             +        G + R   EFL  +G R S+        +  +   +  +   K      
Sbjct: 127 LLTTPPLDSAVGLRDRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGHKERL 186

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
           V +       L    +                F+N   ++++        ++ A  A + 
Sbjct: 187 VPVGSCAYDALNAYLVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARLAAIP 246

Query: 284 K----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
                S H +R   AT     GA    +    G  +V   + YT   AD +R
Sbjct: 247 GAESVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALR 298


>gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 309

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 99/279 (35%), Gaps = 23/279 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKH 128
           L+ E+       + A ++  S+     +  +   +      +     +R  +   + +  
Sbjct: 17  LLEEFSDYLQTLNFAAHTINSYNKDLKEYFQFLHNKNIPLDEANHYTVRDYLTFLKEKSL 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T S+  + L+S++  +K+ +R  Y   N  + ++ PKR+    +  + +D+    +    
Sbjct: 77  TNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDDIDNILAIDDG 136

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
           G     + ++   F+   GLR S+     +  ++    +++    G+ +           
Sbjct: 137 GDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGKGSKVRDIPILPIIYE 196

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             ++     +++         +   N   + ++        K     A +  + S H +R
Sbjct: 197 NWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLIRNANISIDFSPHTLR 256

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +  A    +    G +T+   + YT   +  
Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295


>gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
 gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87]
          Length = 296

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
            + +  +  S+     Q          D      K  R+ +          ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLAFLYSHNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+ + +NP + +  PK++    + + +E+M    Q  +    +G + R+ 
Sbjct: 76  LRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVEQDNKKGMRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 136 IELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
              ++ +          +              + AGV +   H +R   AT   + GA  
Sbjct: 196 RKSSDHEYLIVNMSGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231]
 gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002]
 gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19]
          Length = 293

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 25/288 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127
             LI ++ +        +  +   + S  +       +  DF    +      +  E + 
Sbjct: 5   SALIDDFIEHLELVSGRSPATLKGYRSDLNTFAMRKPELKDFTLDNLRDWLGEAVAEGK- 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T ++  + + + R +  W ++Q Y+  +    +  PK      +       +      +
Sbjct: 64  -TRATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVEHPA 122

Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241
             +     + R   E L  +G+R S+ C   ++ +     +     K      V      
Sbjct: 123 SKTEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRVVPFGQAA 182

Query: 242 MKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290
              L             +  +          +++  Q      A   +AG+     H VR
Sbjct: 183 CDALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGISGLGPHSVR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             +AT   D GA    +    G  +++  + YT  + +     +  +R
Sbjct: 243 HTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR--LKEAFKR 288


>gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 312

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 86/269 (31%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
            L+ N+  ++      + R       G+                  +   SSA + L   
Sbjct: 34  GLSRNTIDAYRRDLTLLARWLQHEQRGELLDADDGALSAYFSARHTQTRASSANRRLAVF 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  ++WA+R+  V ++PCL +   K+     +  ++  ++            G + R   
Sbjct: 94  RRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQVEALLEAPDTETPLGLRDRTML 153

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248
           E +  SGLR S+  +     +  N    +    K      V         L         
Sbjct: 154 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+    + M    F    K  A  AGV    S H +R   AT   + GA
Sbjct: 214 VLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301


>gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 316

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 25/293 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTP 130
            +Y K      L+ N+  ++ +  D+++R     +   +       +   +G+      P
Sbjct: 21  QQYLKLEKA--LSANTLDAYLTDLDKLLRFLKAENIDMLSVTLDDLQRFAAGLHDIGIHP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
            S  + ++ ++  F + +  +Y   +P   +E PK   +     T E++           
Sbjct: 79  RSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIIATVDMSK 138

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
            EG + R   E L   GLR S+ C   +  L  +  F     K      V +    +K +
Sbjct: 139 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAIKEI 198

Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                           ++  F+      ++        K  A KAG+ K  S H  R   
Sbjct: 199 KYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFRHSF 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 259 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829]
 gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 337

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 105/297 (35%), Gaps = 35/297 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR- 126
           ++ L+  + +      +L+ N+  ++E+     +R      +D   I+ K +RS +    
Sbjct: 37  VQQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHKQLRSYLAQLY 96

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             ++   +  + L+++R  +KW VR+     +   ++  PK         ++  +++  +
Sbjct: 97  AARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLA 156

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
              E +    + R   E L  +G R S++    V  +  +   ++   K      V +  
Sbjct: 157 TCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYP 216

Query: 240 GFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              ++L M                      +  FI+   + M+       F+     + +
Sbjct: 217 ECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHL 276

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332
               + H +R   AT     GA    +    G  ++   + YT  +     D  R  
Sbjct: 277 QEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRA 333


>gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 24/281 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124
             LI  Y         LA NS  S+                  +              +E
Sbjct: 2   DRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLE 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
           ++  +P S  + L ++R  +++   +     NP   ++ PK  T   R  +++ +     
Sbjct: 62  AKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   G +     E L  +GLR S+      + +      ++    G+   +     
Sbjct: 122 MPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGS 181

Query: 241 FMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGV--NKSAH 287
             +   M  +     ++                 M    F    K  A  AG+    S H
Sbjct: 182 HARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   AT   + GA    +    G   +   + YT  + +
Sbjct: 242 TLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQ 282


>gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
 gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112]
          Length = 287

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 95/266 (35%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           ++ +     +    A  +  S+ +      +K  +     IT+  I   +E  K  +T +
Sbjct: 4   VNSFLDYLKFEKGNADKTIESYRNDLYTFFKKV-NKKVVDITSDDIYQYIEKLKEKYTYN 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSE 188
           + I+ ++S++  FK+   ++ +  +P   +   K++       +      + Q  +    
Sbjct: 63  TVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNALSVEEINSIIQSFNHEPV 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTIITVELPDGFM 242
             + +L  +FL+ +G R S+     ++ ++N+ F          +     I +EL     
Sbjct: 123 NRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGSKYRFVPIYLELEKEIK 182

Query: 243 KLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + +       +    +           F       A   G+ K    H  R  +AT+  +
Sbjct: 183 EYIREIRPKIKGSEKSYLLFPGIRRENFWKILNKHAQNVGIEKKIHPHLFRHSTATMMIE 242

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            GA    +    G  ++   E YT  
Sbjct: 243 NGADIRIVQELLGHASITTTEVYTHV 268


>gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
 gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM
           2380]
          Length = 482

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 124/357 (34%), Gaps = 26/357 (7%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63
           P +       G   +   +R    +++    P+   E        + +  +    E + S
Sbjct: 124 PGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALGERVVS 183

Query: 64  PRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           PR +     T      +Y + A       + +  +    +QII K G+     +T K I+
Sbjct: 184 PRAQQKQQKTFGEFARKYLEHAKQT--KKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 241

Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176
             +     + + ++A +    + VL+  AV+   +    NP   V + +      R  + 
Sbjct: 242 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFRDNPGRTRYLSM 301

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++F +   E  G     A   LL++G R  +  ++  + +     ++   +T    +
Sbjct: 302 EECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 361

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNKS---A 286
             +    + L  +  +       N      ++           F+     AG+  +    
Sbjct: 362 RVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLGTVRKTFEHALKLAGLQGTDVVI 421

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           H +R   A++ A+ G +   +  + G  +V   E Y   +         S  ++  +
Sbjct: 422 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKT--KDASDHLAEQL 476


>gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
 gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110]
          Length = 305

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 95/285 (33%), Gaps = 28/285 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKH 128
              + E+        +L+ N++ S+     + +    D      ++  + +R  +     
Sbjct: 9   ARYLREFLNYLRLERNLSENTKASYAHDLTRYLLYVQDSHENLDEVRAEDVRKFITELHD 68

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------E 177
                SS  + ++++R L K+   ++ +  N    V  PK          +         
Sbjct: 69  LGLEASSISRNISAIRSLHKFLSAEKKIRKNVAEEVILPKLGKYLPTVLNQQEVDKLLEM 128

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
            +           + +   EFL  +G+R S+      Q+L  +    +    G       
Sbjct: 129 PLHPENPKPKLAIRDKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKGAKERLVP 188

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                   VE     +++  +     +  F+N   +K+         +  A +AG+ KS 
Sbjct: 189 VGSSAIHAVETYQKTIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQAGIEKSI 248

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H +R   AT   + GA    +    G  ++   + YT   DR 
Sbjct: 249 SPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTH-VDRA 292


>gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
 gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1]
          Length = 309

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 24/281 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK-- 127
            I  + ++      L+ N+  ++        R                 +R+    R   
Sbjct: 19  AIDAFLEALWVEDGLSDNTLAAYRRDLTLYARWLVHASGKPLDGSGEADLRAYALERHAG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA + LT  R  F+WA+R+  ++ +P L +   K+     +  ++  ++       
Sbjct: 79  TRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPLRVPKTLSEAQVEALLEAPD 138

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
             +    + R   E L  SGLR S+       ++  +  +++          V   +   
Sbjct: 139 VDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAALRVTGKGSKERLVPFGEEAH 198

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             L                 +  F+      M    F    K  A  AG+    S H +R
Sbjct: 199 GWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLIKRHAGAAGIQVPLSPHTLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +     YT  A R RL
Sbjct: 259 HAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 298


>gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
 gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 95/273 (34%), Gaps = 25/273 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRS--GVESRKHTPSSAIQFLT 138
             L+ N+ +++     ++I+   +         IT + ++      +++ T SS  + ++
Sbjct: 18  RGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKEQLQDFIYTYAKELTASSQARLIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            ++  F++ V ++Y   NP   +E PK   +     +++++ +          +G + R 
Sbjct: 78  GLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDLSRPQGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L   GLR S+     +  L  +   I  T K      V +     K + +      
Sbjct: 138 ILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAPITQKYIEIYRDQIR 197

Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                  + K                     K    KAG+ K  S H  R   AT     
Sbjct: 198 IHEAPKPEFKNILFLNRRGAQLTRAMIFTLVKQHTQKAGIKKKISPHTFRHSFATHLLQN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G +++   E Y    DR  L  
Sbjct: 258 GADLRAIQQMLGHESITTTEVYMH-VDRSHLAD 289


>gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
 gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925]
          Length = 292

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 20/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
           +  +S+Y +      L+ N+  +++    +          D        I + V++ K  
Sbjct: 2   EKFLSKYIEDMLKKELSKNTIEAYKRDLIKFGEFLNKRHEDILDSDMVSIMAYVQTLKKE 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
               SS I+ L ++R  +K+ ++      NP ++ E PK K       T +++ +F    
Sbjct: 62  RKADSSIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLTVDEVDKFLSAP 121

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241
                +G + +   E +  +G++ S+  R  +  +   +  IK +        + +    
Sbjct: 122 DCNEYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGSYA 181

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +  L      ++          F N    KM    F    K  A  A +NK    + +R 
Sbjct: 182 VNCLNEYLKVRDRMNADNLELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A      GA    +    G  T+   + Y+  + + ++
Sbjct: 242 SFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKI 281


>gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 304

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 109/288 (37%), Gaps = 29/288 (10%)

Query: 67  KPTTLKWLISEYRKSAHW-------GSLAVNSRISFESYFDQIIRKSGD---FDYRKITT 116
           + +TLK L   +R+   +         L+ N+  ++          +       Y+ +  
Sbjct: 4   EESTLKALF--FREIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEP 61

Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +H+ + + S K   +  S+  + L S++V F +  R+  +  NP + +E PK        
Sbjct: 62  EHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDI 121

Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              E+    M Q  +  ++G + R  FE L  SGLR S+ C   +  + +    +  + +
Sbjct: 122 LDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVYGKGS 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG 281
              I        M +     + +  +    ++        + M+        K  A +AG
Sbjct: 182 KERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAG 241

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + K+   H +R   AT   + GA    +    G   +   + YT+ + 
Sbjct: 242 ITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSS 289


>gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 310

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126
             +Y        L+  +  S+    +       +            +       + + +R
Sbjct: 21  WQDYL--LAQRGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQEIFLYLAWLRAR 78

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++T  +  + L+++R  F +AV++  +  NP   ++ PK         ++++M+   +  
Sbjct: 79  QNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLARP 138

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 G + R   E L  +GLR S+ C                  K      V L D  
Sbjct: 139 DLRDRGGQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPLHDLM 198

Query: 242 MKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRK 291
             +L          F     Q                   K  A +AG+    S H  R 
Sbjct: 199 QNMLENYIRDWRPAFSPTGNQLFVNRSGRALTRQYIWKMVKKYALEAGIRRPVSPHTFRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
             AT   + GA    +    G   +   E YT   A+R+R
Sbjct: 259 SFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 298


>gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00]
          Length = 306

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 101/281 (35%), Gaps = 22/281 (7%)

Query: 72  KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVES 125
             L  ++  K      L+ N+  +++   D       D   ++  I  ++I      +  
Sbjct: 7   SQLAWKWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRK 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  +  +  + L+S+R  F W V ++ +  NP L ++ PK  +      ++++M +  + 
Sbjct: 67  RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTT 126

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDG 240
                  G + ++  E L  SG+R S+     V    Q+        K G    + L   
Sbjct: 127 PDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSS 186

Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVR 290
            MKLL          F   +K                    K  A  A +NKS   H  R
Sbjct: 187 AMKLLIHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
              AT   + GA    +    G   +   E YT   +DR++
Sbjct: 247 HTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287


>gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 413

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 102/325 (31%), Gaps = 18/325 (5%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           ++  +      T              +         +  T  ++           +   N
Sbjct: 64  KKAHVTGEGPKTLQAKRDIEKAREEAEAREKAVQEAEAVTFGFIFEGVYLEHARQNKKPN 123

Query: 91  SRISFESYFDQII-RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  + +  F + +    GD   + I+  H   IR  + +   +  SA   L  +R +F +
Sbjct: 124 TVQTEQGLFRKWLGPVIGDVPLKDISPFHLERIRKNIAAAGLSARSAHYALCVVRQVFNF 183

Query: 147 AVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGL 204
           A   +    ++P   V+ PK     +R  T E+  +     ++ S          L+ GL
Sbjct: 184 ARDHDMTDCVSPTCKVKAPKTDNRRLRFLTHEEADKLLEHVAKRSHELHAISLVSLHCGL 243

Query: 205 RCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           R  +        +  +  ++  +  K G      +      +LA    G     +   + 
Sbjct: 244 RAGEIFNLTWSDVDFDRETLTLRDTKNGRTRIAYMTGQVRGMLAARVKGGPGDPVFPGRG 303

Query: 263 KMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGW 313
            +  +  S  F+      G              H +R   A+   + G   + +    G 
Sbjct: 304 GVRRSYVSNAFERAVKDLGFNEGITDSRQKVVFHSLRHTFASWLVEQGTDLYSVKELMGH 363

Query: 314 KTVDQAETYTKGA-DRIRLGIKNSR 337
           +T+   E Y+  + D +R  +K   
Sbjct: 364 RTLSMTERYSHLSPDSLRRAVKGLE 388


>gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7]
          Length = 282

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
            LA N+  ++                    +     I+    ++  +   ++A + L ++
Sbjct: 4   GLAQNTLSAYRRDLSAFALWLHAKPGKTLEQADAADIQDWFAAKHASTKATTANRRLAAL 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           +  + WA+RQ  VA +PCL++   K+     +  +++ +             G + R   
Sbjct: 64  KRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQVDALLQAPDDNSPLGLRDRAML 123

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT------ 248
           E L  +GLR S+     +  +      ++  +        V L D  +  + +       
Sbjct: 124 ETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGDEALHWIDLYAKQSRP 183

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      F+      M    F +  K  A  A +    S H +R   AT   + GA
Sbjct: 184 GLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTPLSPHVLRHAFATHLLNHGA 243

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
               +    G   +   + YT  A R RL   +++    
Sbjct: 244 DLRVVQMLLGHADISTTQIYTHVA-RERLKTMHAKHHPR 281


>gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
 gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582]
          Length = 304

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRK 127
           +  + +       L+  ++IS+      +I  + +           +T + + +  +   
Sbjct: 13  VDAFLRYLKVERQLSPLTQISYSRQLQALIALAAELGVSEWRQLDAVTVRQLAARSKRAG 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   +  P+      +    ++M Q      
Sbjct: 73  LQSSSLALRLSALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEIDL 132

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+           K      + +    + 
Sbjct: 133 NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIGRTAVT 192

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L            G +  F++N  ++++       F     K GV  +   H +R   A
Sbjct: 193 WLGHWLALRELFAPGDDAMFLSNQGKRISPRNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 253 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 289


>gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
 gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29]
          Length = 302

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 83/279 (29%), Gaps = 26/279 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
              L + Y         +  ++ +++                      +  +   S +  
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTVEHLDVRAYLSELYD 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M      
Sbjct: 64  QEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFES 123

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                    + +   E L  +G+R S+     V  +      +    K      V     
Sbjct: 124 AQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSF 183

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
               L                      F+N+  +++  T           K+ +      
Sbjct: 184 AQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 282


>gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122]
 gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC
 gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
 gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056]
          Length = 316

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 103/296 (34%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++       L+ N+  ++ +   +++      + D   +T   ++          
Sbjct: 16  IIRKYQQYIRLEKALSSNTFDAYMTDLQKLLHFLDGENIDIPDVTPDDLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F + V  +Y+  +P   +E PK   +     T E++ +      
Sbjct: 76  IHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+ C   +  L     F     K      V +    +
Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +                ++  F+     +++        K  A KAG+ K  S H  R
Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109]
 gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVE 124
              L + Y         +  ++ +++                       +  +   S + 
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFSFLKTSGSDNYLTVEHLDVRAYLSELY 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            ++++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3]
          Length = 334

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           I++Y +       LA N+  ++     +  R     G    + IT  H+   V +     
Sbjct: 31  ITDYLQHMGVERGLAANTLSAYRRDLARYSRYLAAQGCSSPQDITRHHVTGYVRALSDGS 90

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    SA + + ++R L K+   + Y   +P   V  P       +  + +++ + 
Sbjct: 91  DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEVTRI 150

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNI 221
                  +    + R   EFL  +G R S++    V  +                  +  
Sbjct: 151 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRLFGKGSKE 210

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +     G             LLA    G    F+N    +++        KA A KA 
Sbjct: 211 RLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAGKAQ 270

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  + S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 271 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 314


>gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4]
 gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
 gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 112/306 (36%), Gaps = 25/306 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           ++   T   ++ +YR+      SL+ N+  ++ +  D+++      + +   +  +++  
Sbjct: 2   KRTEKT-DKILVKYRQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E+
Sbjct: 61  FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEE 120

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------- 224
           +         G+    + R   E L   GLR S+ C   +  L      I          
Sbjct: 121 IDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                   I  + L      L+ + P  ++  FI+N  + ++        K  A + G+ 
Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLK 240

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   AT   + GA    +    G +++   E YT   DR  L  +       
Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299

Query: 342 VVDSDD 347
            +   +
Sbjct: 300 NIKFRE 305


>gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
 gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2]
          Length = 301

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121
            +  I E+        + ++N+   +                      IT     + I+ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNSITKTHVRRFIQH 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176
            +      P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +     K
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +       +  L F+ L  +G+R S+      + +  +  +I+    G    + 
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284
                +  L  + +     +  +  Q +         N       FK    KAG+     
Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           S H +R   AT+             +    G +++   + YT    ++ +  I+
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296


>gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 95/286 (33%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---E 124
             LI  +          A+N+   ++S     I+     +      I    I S +   +
Sbjct: 2   DELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEK 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  + +S  + + S+R+ +K+ + +  +  NP +S++ PK   +         ++   S
Sbjct: 62  HRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLS 121

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTIITV 235
                   G + +   E L  +G R S+     +  +      IK +     +    +  
Sbjct: 122 AADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGK 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN--KSAH 287
           +      + L       +    ++          +      +  K  A KAG+    S H
Sbjct: 182 KASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    +    G  ++   + YT    +    I
Sbjct: 242 KLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAI 287


>gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 25/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRKHT--PSSAIQFLT 138
             L  NS  ++    +++I      +  +    I+ +  +  +     +  P S  + ++
Sbjct: 18  RGLMENSITNYVLDVEKLITFLNKKNITESPISISKETTQQFIYEISASINPRSQARIIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            ++  F + + ++Y A NP   +E PK   +     + E++            EG + R 
Sbjct: 78  GLKSFFNYLIFEDYRADNPMDLIEAPKIGRKLPDTLSVEEINDLIDAIDLSKPEGERNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQKTGTIITVELPDGFM 242
             E L   GLR S+     +  L      I+                         D   
Sbjct: 138 MLETLYGCGLRVSELTNLRLSDLFFKEDFIRVTGKGDKQRFVPISNINKKYINIYKDEIR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
             L +    ++  F+N   +++         K  A   G+ K+   H +R   AT   + 
Sbjct: 198 NHLNIKKGFEDILFLNRRGRQLTRAMIFTIIKQLAETIGLKKTISPHTLRHSFATHLLEN 257

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           GA    +    G +++   E Y    DR  L 
Sbjct: 258 GADLRAIQQMLGHESITTTEVYVH-IDRKHLS 288


>gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
 gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603]
          Length = 301

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            L   Y +     + +  +  S+++  +  ++     G   +  +T   +R  + +    
Sbjct: 10  QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQ 67

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + ++S+R L+++ +R+ Y   NP      PK++    +    E++++     
Sbjct: 68  KLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVS 127

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                 G + +   E +  +G+R S+     +  +   + +I    K      +      
Sbjct: 128 DTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 187

Query: 242 MKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              L                      F+N   + +              KA +    S H
Sbjct: 188 QDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 248 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 290


>gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus
           weihenstephanensis KBAB4]
 gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
 gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4]
 gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621]
 gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196]
 gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048]
          Length = 301

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 5   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 64

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E++++  
Sbjct: 65  HDQKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELF 124

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 125 EVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 184

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N   + +              KA +    
Sbjct: 185 SYAQDALITYIENGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRI 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 245 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 290


>gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 104/354 (29%), Gaps = 34/354 (9%)

Query: 9   PFVTKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN---SP 64
           P +     R GK  +  +    G++       +      Y+ A               + 
Sbjct: 6   PGIY----RRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNR 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K  TT   L  +Y +             S      ++ R  G+     IT + +     
Sbjct: 62  KKYTTTFDQLAEKYLEYCKAQ----RDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQS 117

Query: 125 SRKH----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +R                  +P++  + LT+++ +F  A +   +  +   +V + +   
Sbjct: 118 ARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTK 177

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           E  R      + +  +     S+  R    F L +G R  +       H+      I+  
Sbjct: 178 ENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIA 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV-N 283
            +    + ++P           + +                       F     +A + N
Sbjct: 238 DSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMN 297

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
              H +R   A+     G     +    G K++     Y+  A D ++  ++  
Sbjct: 298 FHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVERL 351


>gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6]
 gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
 gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6]
 gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 319

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 103/298 (34%), Gaps = 25/298 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SL+ N+  ++ +  D+++        D  ++    ++          
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F++ +  +Y+  +P   +E PK   +     T E++        
Sbjct: 76  IHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              +EG + R   E L   GLR S+     +  L  +  F     K      V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGV 289
             + +  + +    +  D +             +        K  A  AG+ K  S H  
Sbjct: 196 NEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           R   AT   + GA    +    G +++   E YT   DR  L  +        +    
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYRR 312


>gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT]
 gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT]
          Length = 292

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 20/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
           +  + +Y +      L+ N+  ++     +  +   +   D        I + V++ K  
Sbjct: 2   EEYLKQYIEDMRKKELSKNTIEAYNRDIIKFCKFLKEREEDILDADMVSIMAYVQTLKKE 61

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +    I+ + S+R  +K+ +R      NP ++ E PK K       T +++++F +  
Sbjct: 62  KKADSSIIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILTVDEVEKFLNAP 121

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241
                +G + +   E +  +G++ S+  R  +  +   +  +K +        + +    
Sbjct: 122 DCSEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSYA 181

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +  L      ++          F N    KM    F    K  A  AG+NK    + +R 
Sbjct: 182 VNCLNEYLNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKKIDSYTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A      GA    +    G  T+   + Y+  + + ++
Sbjct: 242 SFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281


>gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 320

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 93/287 (32%), Gaps = 19/287 (6%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYR 112
            PK   +  P     T + L+ E+         +  +   +  + ++   +       Y 
Sbjct: 1   MPKSNVLRLPLSLKITWQDLLDEFILVKEAEGRSARTIHDYRFHIERFFNRFPHALESYT 60

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +    ++   E    +PS+  + L  ++  F W  ++ Y+  NP   ++R K     IR
Sbjct: 61  SLRQSVLKYFTEK--ASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNIR 118

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             + E++++           G +        + +G+R  +  +     L      I+ + 
Sbjct: 119 HVSLEEVKKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESREIRIRP 178

Query: 229 TGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKA 277
                    T+ +     + +A     +   + ++     +    +          +   
Sbjct: 179 EVAKTRIGRTLIITPFTAQQIARFLRIRPEHWGDDVPLFASENGITLNENDWAKRVRQYC 238

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            KAGV  + +G+R   A     AG     L    G   +     Y +
Sbjct: 239 KKAGVKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVR 285


>gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           10987]
 gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus
           ATCC 10987]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E++++  
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                G+    + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 KVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1]
 gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293]
 gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 299

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
 gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289]
          Length = 315

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           K ++  +R+        + N+  ++    D+++R           +T + +         
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+S+R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +   ++          V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L      +    I          N     +  T   I  K  A +AG+ K+   H 
Sbjct: 188 ALDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 319

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 105/296 (35%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SL+ N+  ++ +  D+++    D   D  +I+ K ++          
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFLSDEGVDILEISLKDLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++    S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHIISTVD 135

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              +EG + R   E L   GLR S+     +  L  N  F     K      V +    +
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + +    + +    I  D             ++        K  A  AG+ K  S H  R
Sbjct: 196 QEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70]
 gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121
            +  I E+        + ++N+   +                      IT     + I+ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNNITKTHVRRFIQH 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176
            +      P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +     K
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +       +  L F+ L  +G+R S+      + +  +  +I+    G    + 
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284
                +  L  + +     +  +  Q +         N       FK    KAG+     
Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           S H +R   AT+             +    G +++   + YT    ++ +  I+
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296


>gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens
           FZB42]
 gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 94/269 (34%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFL 137
             L+ N+ +S+E         +        +  +T  HI   ++  K +     ++ + L
Sbjct: 16  RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHIKDSGKSGKTSARHL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
            S+R   ++ +R++    +P + +E  K +    +     ++++           G + +
Sbjct: 76  ASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLLDTPKLDSPFGLRDK 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
              E L  +G+R S+     +  +   +  ++          V + +     +       
Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195

Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                        F+N+  ++++   F    K  A +AG+ K  + H +R   AT   + 
Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRAVQEMLGHADISTTQIYTHVTKTR 284


>gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I ++  +  +  +L+ N+  ++     ++      K  D     I+ + I+  +      
Sbjct: 7   IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  ++++S++  FK+    E  A NP   +E PK           E+++      
Sbjct: 67  YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLIEAI 126

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230
                 G +     E L   GLR S+     + +L      I               +  
Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
             +  +        + + P   +  F+N    K+      I  K  A +A + K  S H 
Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            R   AT     GA    +    G  ++   E YT   + 
Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNE 286


>gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521]
 gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 334

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 15/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135
           Y +     + +  +  ++     +      +     IT   IR  +        PS+   
Sbjct: 61  YLQVRKLENYSQATLSNYMYTLRKFASFI-NKPVGTITKNDIRYYMAINFTELKPSTVNN 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +   +  F+W  ++E +  NP  S++  +      +  T E++++ +    +  + R  
Sbjct: 120 KIACFKAFFQWLEQEEMIPKNPARSLDETRLPKRLRKSLTAEELERVRIACVDN-RDRAL 178

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            EFL+ +G R S+     ++ L  N  +     K     TV   D     +         
Sbjct: 179 VEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTVCFTDKAKLYIRKYIEEDRQ 238

Query: 255 FFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                           +++     +       +A +      H +R   AT+S  +GA  
Sbjct: 239 KDNEDALFVSTKFPYNRISRRSIEVAISKIGIRANLGKPLFPHLLRHTMATLSLQSGADI 298

Query: 305 HELMATYGWKTVDQAETYTK 324
             + +  G  T    + Y +
Sbjct: 299 TIIQSLLGHTTPSTTQIYAE 318


>gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132]
 gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC
 gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC
 gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC
 gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC
 gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC
 gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL]
 gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948]
 gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3]
 gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30]
 gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765]
 gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754]
 gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21189]
          Length = 298

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   DAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-ELNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 297

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 16/268 (5%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127
           +  + +   +      N+ I++     Q +      G  +  KI   HIR+ +       
Sbjct: 9   VDAFLEYLKYVSGRTDNTVINYAVDLSQFVDYVISQGVEEVEKIEQAHIRAFLRELAAYG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++ SS ++ L+S+R    + ++   +  +P   V  PK      R    ED++       
Sbjct: 69  YSKSSVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLENGP 128

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
            G    + R   E L   GLR ++      + +      ++ +        V +     K
Sbjct: 129 NGEFEIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLVPMGRHAQK 188

Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
            L    +         F  +  +++            A + G+   S H +R   AT   
Sbjct: 189 ALREWQVFLGKLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLAGVSPHMLRHSFATHML 248

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           + GA+   L    G +++   + Y K +
Sbjct: 249 EGGASLRVLQELLGHQSLVTTQRYLKIS 276


>gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 391

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 117/383 (30%), Gaps = 48/383 (12%)

Query: 9   PFVTKERTRHGKIIYYF---------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
             V    T+  +  Y +         + G   ++            A  SA+       E
Sbjct: 4   GRVFSYTTKSNEKKYGYTITITPADPQTGRYPQVTRKGFKSE---RAAKSAMMEHLRSLE 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                  K  TL    S +       SL   +R ++       I+ + G     KI  +H
Sbjct: 61  DTPVVHAKSFTLHEWASRWFAD-KSSSLRPWTRRTYHHVLQAYILPELGKMPISKIEARH 119

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           I++      +   P +  +    ++     AV+  Y+  +P L+VE P+ KT      + 
Sbjct: 120 IQALYRKLSNRLKPVTVHRIHRVLKTCLLAAVKAGYLDKSPFLNVEPPEHKTPPKPVLSV 179

Query: 177 EDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------- 218
            D  +             +A    +++G+R  +      + +                  
Sbjct: 180 NDAFRLLAWLREHRPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLDTGVIQLERTRYRPKG 239

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNAT 267
              F    +  G+   + +    +  L      ++     +                +  
Sbjct: 240 GQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQEIERESWTPESFVVRLPNSAPPSPA 299

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
            F+   +    + G+   S HG+R   AT   ++G     +    G  ++   A+ Y   
Sbjct: 300 SFNNAIQNARKELGLPPVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHV 359

Query: 326 ADR-IRLGIKNSRRISSVVDSDD 347
            D   R  I+  +R+     +++
Sbjct: 360 TDALQREAIEKLQRMMRSRRTNN 382


>gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510]
 gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 313

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 111/306 (36%), Gaps = 25/306 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           ++   T   ++ +Y++      SL+ N+  ++ +  D+++      + +   +  +++  
Sbjct: 2   KRTEKT-DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED 60

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      P S  + L+ +R  +++ + ++Y+  +P   +E P+   +     T E+
Sbjct: 61  FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEE 120

Query: 179 MQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTII 233
           +            EG + R   E L   GLR S+ C   +  L     F     K     
Sbjct: 121 IDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR 180

Query: 234 TVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
            V +    +K + +    +             FI+N  + ++        K  A + G+ 
Sbjct: 181 LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK 240

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   AT   + GA    +    G +++   E YT   DR  L  +       
Sbjct: 241 KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNMLRSEIIEHHPR 299

Query: 342 VVDSDD 347
            +   +
Sbjct: 300 NIKFRE 305


>gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 111/345 (32%), Gaps = 21/345 (6%)

Query: 16  TRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           TR GK    Y           +    ++       +A   +  K +    PR+   TL  
Sbjct: 6   TRKGKKKTTYTITVRVKGYESISRTFDTKGEARIWAAEMEAEMKNQRFKDPRRAHRTLDE 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR--KHTP 130
               Y ++      A+ ++         +  K G +     IT   +    + R    + 
Sbjct: 66  AFDRYLETVTSQK-ALTTQERERRIAKLLKEKFGRNTLLPDITPSVVAKYRDQRLKSVSA 124

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    L  +  LF  A ++  + I   +      +  +G   + KED         + S
Sbjct: 125 YAVRLELALLSHLFIKACKEWELPIENPVKSIERPKVPKGRIFFLKEDEAVRLLKECKAS 184

Query: 191 QPRLAFEFLL---YSGLRCSDSCRAGVQHL---------QNNIFSIKTQKTGTIITVELP 238
           + +  + ++L   ++ +R S++       +                +T      +   L 
Sbjct: 185 RNKRLYPYVLILLHTAMRPSEAAGLKWHQIDFDRRSLTLYITKNEPRTVPLTKTVITALE 244

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           D          +  +    +   Q + +++F   F     +A +     H +R  +A+  
Sbjct: 245 DLKKTAFDNEFVFLKGEGKSQHAQNIPSSRFRPSFDRARERAKLPLLHMHDLRHTAASQM 304

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             AG     L A  G  T+     YT   +  +L  K   RI+S+
Sbjct: 305 LMAGTDIRTLAAILGHSTLQMVLRYTHLLNEHKL--KAVDRINSL 347


>gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 332

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 86/258 (33%), Gaps = 13/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQ 135
           Y +     + +  +  ++            +     IT   IR  +        PS+   
Sbjct: 61  YLQVKKLENYSKATLSNYMYTLRNFSTFI-NKPVSTITKNDIRYFMAINYTNLKPSTVNN 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L S++  F+W  ++E +  NP   +   +      +  T E++++ +    +  + R+ 
Sbjct: 120 KLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSLTIEELEKIRLVC-KDVRERVL 178

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254
            EFL  +G R S+  +A +  L  +  S++          V   D     L      ++ 
Sbjct: 179 IEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIVFFSDKTKLHLKNYIDTRKD 238

Query: 255 FFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
                         +++     +       ++ +      H +R   AT+   +GA    
Sbjct: 239 NEDALFISSKFPYNRISKRGLELIVSKIGERSNIGKPVFPHLLRHTMATLGLQSGADITT 298

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  T    + Y +
Sbjct: 299 IQHLLGHTTPSTTQIYAE 316


>gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
 gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32]
          Length = 294

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 29/297 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126
           K LI ++ +      +++ ++   + S     +          D   I+   IR  +   
Sbjct: 2   KKLIDQFCRYLAIERNVSPHTVAGYRSDLTFFLSFLDREKVQADVGSISHLLIRRYIAGL 61

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              H  SS  + L ++R LFK+ +RQ  V+ NP   V  PK++ +     T +++     
Sbjct: 62  YKDHQKSSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTLVE 121

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                     + R   E L   G+R S+     V  ++ N   I+          V +  
Sbjct: 122 APQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKERIVPIGR 181

Query: 240 GFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRK 291
             ++ LA     + T         N    ++ +   +        K       S H +R 
Sbjct: 182 KALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATMKKISPHTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   + GA    +    G  ++   + YT  +           R+  V D   P
Sbjct: 242 TFATHMLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDRLMEVYDKAHP 289


>gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
 gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 295

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 21/272 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK--HTPSSAIQFLTSM 140
             L+ ++  ++    D  +               + + + + +R+  + P S  + L+ +
Sbjct: 18  RGLSQHTLAAYRRDLDAWLAHLAARGACLMAPDEQALETFLAARREHYHPRSVARLLSCL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  ++WA+ + +V+++P      P+  T+      + ++++  +        G + R   
Sbjct: 78  RRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAEVERLLAAPDVELPLGLRDRTML 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E L   GLR S+     V  +      ++   K      V L +     LA         
Sbjct: 138 EVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKGDKERLVPLGEEATAWLARYLRQGRGD 197

Query: 256 FINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            + +  +           M    F    K  A  AG++K  S H +R   AT   + GA 
Sbjct: 198 LMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVSAGIDKPLSPHTLRHAFATHLLNHGAN 257

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +    G   +   + YT+ A      +  
Sbjct: 258 LRVVQMLLGHSDLSTTQIYTQVAQARLEALHA 289


>gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
 gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1]
          Length = 294

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 91/285 (31%), Gaps = 26/285 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR--- 126
           I  +     +    + ++ +++    +Q +       G+ D   +    IR+ V      
Sbjct: 2   IDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILFVGHSEIRAWVIDLVEN 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQ 181
           + + ++  + + ++R  +K+ +R   ++ +P   ++  K   +          +    + 
Sbjct: 62  QLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISSVLEES 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
                 EG + ++  EFL  +G+R S+        +  +   +K                
Sbjct: 122 VYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERIIPLTNG 181

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHG 288
               +       +         + F ++N+ +           +           +S H 
Sbjct: 182 LARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQTSKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT   + GA  + +    G   +   + YT  +      +
Sbjct: 242 LRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAV 286


>gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
 gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56']
          Length = 323

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 23/286 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L   +  Y        +LA  +  ++     +++  +   G      +    I + + + 
Sbjct: 30  LATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVAL 89

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + SSA + L+++R   ++ +R+  +  +PC  VERP+      +  + +++    
Sbjct: 90  GQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLI 149

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
               +G+    + R     +  +GLR S+  R  +  +       +   K G    V L 
Sbjct: 150 EAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLG 209

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV--NKSAH 287
           +  +  +      + T   +   Q          +            A   G+    S H
Sbjct: 210 EPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPH 269

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    + A  G   V   E YT  AD      
Sbjct: 270 KLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAA 315


>gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 326

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 88/284 (30%), Gaps = 32/284 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK- 127
             +++ Y        + + N+  +++   ++ +      D +   +    I   +   + 
Sbjct: 25  SHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDLNIDSVDEPDIEQFIADLRR 84

Query: 128 ------HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +P   SSA +   ++R L +++  +  +A +    V   +         T E 
Sbjct: 85  GDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQ 144

Query: 179 MQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
           + +                + R   E L  +G+R S++    +  +  N   ++      
Sbjct: 145 VNRLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGR 204

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAG 281
               V +    +  +    +      +              ++       +  A A + G
Sbjct: 205 KERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAERCG 264

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  S   H +R   AT     GA    +    G  +V   + YT
Sbjct: 265 LGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYT 308


>gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
 gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681]
          Length = 317

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 100/282 (35%), Gaps = 32/282 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP--- 130
           +Y +      L+ ++  +++    Q        G      +   H+   +   K      
Sbjct: 13  QYMEEE--KGLSRSTLEAYQRDVQQFAEFAESCGIEQPDNVQRSHLVLYLGRLKEQGKAA 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           ++  + + S+R  F + +R+     +P + +E PK   +     T++++++         
Sbjct: 71  ATISRSVASIRSFFHFLIREGITIHDPSVLLELPKATKKKPSVLTQDEIERLLDAPDVTA 130

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITV 235
            +G + +   E L  +G+R S+     V+ ++ ++  +                      
Sbjct: 131 PQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGKERVVPISREASQWA 190

Query: 236 ELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           +      +LL           + +E  F+N   Q+++   F    K    +AG+  + + 
Sbjct: 191 QAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIKKYGQEAGISEDITP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   A    + GA    +    G   +   + Y + A R
Sbjct: 251 HTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARR 292


>gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
 gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310]
          Length = 321

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 23/283 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KH 118
                T   ++  Y +      + + N+ I++++    ++      +   +       +H
Sbjct: 2   ESNKKTTTDIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQH 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +      P+S  + L+ +R  +++ V   Y+  +P   +E P+         + E+
Sbjct: 62  FAGQLHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
           +   ++       EG + +   E L   GLR S+     + +L  +   I+         
Sbjct: 122 VDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
            V +    +K L +  + +    I   +Q           +  T   I  K +A +AG+ 
Sbjct: 182 LVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQ 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K+   H +R   AT     GA    +    G +++   E YT 
Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTH 284


>gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
 gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4]
          Length = 306

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 28/300 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFD 110
            P              L++ +   + +      LA N+  ++    +   R     G   
Sbjct: 1   MPGSPEKVRLAADQRQLEYFLDALWLEE----GLAENTLAAYRRDLEGFSRWLYPQGRTL 56

Query: 111 YRKITTKHI--RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                   +   +    R H   SA + ++S+R  +++ VR++    +P   VE P+   
Sbjct: 57  VEAQREDLLAYLAHRLERSHKARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGR 116

Query: 169 EGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 ++E+++   +      + G + R   E L  +GLR S+     +  L      +
Sbjct: 117 PLPESLSEEEVEALLAAPEVNCNLGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVV 176

Query: 225 K-TQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWF 273
           + + K      V L +  +  L                 E  F+      M    F    
Sbjct: 177 RLSGKGNKERLVPLGEVALSWLECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLI 236

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A +AGV K  S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 237 KRYARQAGVRKALSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVA-RARL 295


>gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 284

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++++       + N+   +  +   ++R         IT   +             + 
Sbjct: 13  LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 71

Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             L     ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 72  NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 125

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           +       L YSGLR S+ C   ++ +  N   +     K      V +    ++ L   
Sbjct: 126 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 185

Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
              +E             K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 186 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 245

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 246 DIRFIQQFLGHSSVATTQIYTHVDD 270


>gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 331

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 13/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           +  Y  S     L++ +  ++                  I T  +R  + +R      SS
Sbjct: 59  LQIYLASKKLDGLSIETLKNYRYNLIIFADYL-RKPLAAIETMDLRMFLGARCKDMKQSS 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP   +++ K+     +P T+E+ +  +       + 
Sbjct: 118 VNGQISILKSFFGWLADEEYIPKNPAKKLKQTKQPKRVRKPLTEEEAELLRQACETD-RQ 176

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +   EFL+ +G R  +  +     +  +  S     K      V        LL      
Sbjct: 177 KALTEFLISTGCRLDEVFKVNKDDINWHEMSLFIVGKGDKERKVYFNTKAKILLKKYLFS 236

Query: 252 KETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           +E               ++        FK  A  AG+ KS   H  R   AT   ++G  
Sbjct: 237 REDDNPALFVTSKRPYHRLGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMP 296

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G ++    + Y + ++ 
Sbjct: 297 MPIIQHLMGHESPATTQIYAQLSEE 321


>gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
 gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97]
 gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187]
 gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26]
          Length = 299

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTKTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
 gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17]
          Length = 314

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 24/268 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138
            L+  +R ++ S    + +      G           + + +    +     S+A + L+
Sbjct: 35  GLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQRSDLLTWLSGGLAGGVKASTAARRLS 94

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
            +R  +++ +R+  +  +P L +E PK         T+ ++    +          + + 
Sbjct: 95  GIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEVNALLTEPDPEVPIELRDKA 154

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP---- 249
             E L   GLR ++     +  +      ++          V L +  +  L        
Sbjct: 155 MLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEAIDWLQRYIKEAR 214

Query: 250 ------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    +  F  N  + M    F    K  A + G+  + S H +R   AT   + G
Sbjct: 215 PELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTLRHAFATHLLNHG 274

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  A + 
Sbjct: 275 ADLRVVQMLLGHADLSTTQIYTHVARQR 302


>gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 301

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 29/287 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
            + + +         +A N+  ++    ++ I      G      ++T H+ + V   + 
Sbjct: 5   QVATMWLDHLAVERGVAANTLSNYRRDVERYIAWLEAAGISRLDDVSTNHVEAYVADLRR 64

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + SSA + L   R L K+AV +     +   +V  P    +     + +++ 
Sbjct: 65  GVGRAKPLSASSAGRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLPDTLSIDEVA 124

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235
           +        +    + +   E L  +G R S+     V  + ++      T K      V
Sbjct: 125 RLLDACPTRTPCDLRDKALLEVLYATGARVSEVLGLVVDDVASDADVLTVTGKGSKQRLV 184

Query: 236 ELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
            L     + +                   F+N     ++        K  A +AG+  + 
Sbjct: 185 PLGSHAREAVDAYLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGIIKDAAERAGLAKDI 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           S H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 245 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLR 291


>gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99]
          Length = 296

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 82/275 (29%), Gaps = 21/275 (7%)

Query: 76  SEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129
            ++          + ++  ++     Q  R              I  ++    +      
Sbjct: 6   EQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQ 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185
            ++  + ++++R  + + + Q+   +NP + +  PK++      +  E+M    Q     
Sbjct: 66  RTTVSRKISTLRSFYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQD 125

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
             +G + R+  E    +G+R S+      + +     +     K G    V   +   + 
Sbjct: 126 AHKGLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQS 185

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSA 294
           +                          +              + AGV     H +R   A
Sbjct: 186 IEQYLAEFAPIQNVQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    + +  G   +     YT   ++ 
Sbjct: 246 THLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ 280


>gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 328

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 84/305 (27%), Gaps = 32/305 (10%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY 111
                    ++  + P  L+  +  + +       L+ N+  ++     +      D   
Sbjct: 5   AEGSGGAAPDAVPEVPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGV 64

Query: 112 RKITTKHIR---------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                E    T SS  + L+S+R   ++ V +  V ++      
Sbjct: 65  ADPADASAAHIAAFAQRVRDPEHGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQR 124

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL- 217
            PK  +   +  + E M +             + +   E L  +G R S+     V  + 
Sbjct: 125 PPKLPSRLPKAVSIETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDVL 184

Query: 218 ---------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                +                   +LA         F+     
Sbjct: 185 GADGAAAELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRGH 244

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++     +  KA A +AGV    S H  R   AT     GA    +    G  +V   +
Sbjct: 245 ALSRQNAWLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQ 304

Query: 321 TYTKG 325
            YT+ 
Sbjct: 305 IYTRV 309


>gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 117/378 (30%), Gaps = 56/378 (14%)

Query: 17  RHGKII---YYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + G       Y  +    G  +                ++ L     K+E++     K  
Sbjct: 7   KRGSTYSVVVYVGRDETTGKKKYKWYSGFKTKKEAEKALAELVNQIEKQEFV---EDKNV 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   I+E+ +  H   L   ++ S++      ++    D +   +    I     + K 
Sbjct: 64  TIGEFINEWFE-IHCKKLTPKTQESYQKMLRFYVLPYLNDIELATLKPLTIAKFYNTLKE 122

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++       +R ++ +AV+ +YV  NP  +VE PK+  + ++ W  +++++ +  
Sbjct: 123 QGISNTTLNYVHRLLREIYNFAVKWQYVTKNPFDNVETPKKDRKEMQVWNLDEIRKAEEV 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------------KTQK 228
               +         LY+G+R  + C      +                        K + 
Sbjct: 183 -FRDTPIFAHVMLALYTGMRLGEVCGLKWDDIDFKNKVCAVRRVAEYINGEVVIKEKPKT 241

Query: 229 TGTIITVELPDGFMKLL----------------AMTPIGKETFFINNDKQKMNATQFSIW 272
             ++  V L D  +++L                           +  D +       S  
Sbjct: 242 DKSLRIVALTDNLVEILKEEKKRQLENKLKFGQNYDTTYDGFISVWEDGRFKVPDYVSKK 301

Query: 273 FKAKA-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADR 328
           F      +  + K   H +R   AT+   AG     +    G   +      Y+    D 
Sbjct: 302 FSKILSKQNEIKKIRFHDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVNLDM 361

Query: 329 IRLGIKNSRRISSVVDSD 346
            R   +   ++   +  D
Sbjct: 362 QR---EAIEKLEQRLAKD 376


>gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Ames]
 gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Sterne]
 gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
 gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Kruger B]
 gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Vollum]
 gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str.
           Australia 94]
 gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames]
 gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus
           anthracis str. Sterne]
 gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488]
 gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193]
 gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389]
 gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465]
 gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174]
 gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248]
          Length = 299

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54]
 gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 101/341 (29%), Gaps = 22/341 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K   + G +     +  G   R           A+          ++  +    +  +L
Sbjct: 5   KKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRLAEQISL 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV---ESRK 127
           +  + +Y + +       ++          + R  G D     I    +       +   
Sbjct: 65  QEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPALVAQYQLTRQKEG 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           ++ S+    L  +  ++  A +   +   NP   + R        R  T  + +      
Sbjct: 125 YSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDITRVPPDKGNTRFLTTAEAKIVLDES 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFM 242
                 +       L+++G+R S+  R   + +     S++  +T +    +V L     
Sbjct: 185 KNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLTTKAA 244

Query: 243 KLLAMTPIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAG------VNKSAHGV 289
           ++L         ++   +               FS  +++   K         +   H +
Sbjct: 245 EVLQTVSPEATGYYFLKENHLNQKDIRLAPAKAFSSCWRSLRKKMEASGHKIPHFRPHDL 304

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R  +A+    AG    E+    G  T+     YT   D  R
Sbjct: 305 RHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRR 345


>gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 26/304 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTK 117
            +    P  L   I  +  +      LA  S  S+ S   Q+     +        I   
Sbjct: 2   KAAEADPADLAE-IDAFCDTLWLEDGLAKASLSSYRSDLGQLAGWLAEQRLGSLCGIDEA 60

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +   V +   T   SS  ++L+++R  ++  V     + +P L +  P + +   +  +
Sbjct: 61  TLLRFVATLAQTLRASSQARYLSTLRRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLS 120

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
           +  +++           G + R   E L  +GLR S+     +  +  ++  ++    G 
Sbjct: 121 ELQVERLLGAPPSETPLGQRDRAMLETLYATGLRVSELVGLKLHEVSLDMGVVRVFGKGA 180

Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V L +     L                 +  F+      M    F    K  A +A
Sbjct: 181 KERLVPLGEEARDWLRRHLADGRLALLAGRQSDDVFVTARGAAMTRQAFWQLIKRYALQA 240

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           G++    S H +R   AT   + GA    +    G   +   + YT  A R RL I +++
Sbjct: 241 GMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERLKILHAQ 299

Query: 338 RISS 341
               
Sbjct: 300 HHPR 303


>gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
 gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01]
 gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B]
 gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A]
 gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C]
 gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04]
 gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082]
          Length = 314

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 93/293 (31%), Gaps = 28/293 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITT 116
           +     +  T      ++ +        +  ++ ++E         + +SGD D  K   
Sbjct: 6   LGQKEGEKMTEATWEQKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEY 65

Query: 117 KHIRSGVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +R  + +       ++ +S  + + S+R  +++ +++E +  NP   V   K+     
Sbjct: 66  FTVRVYLSALADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLP 125

Query: 172 RPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KT 226
           R + + +MQ              + R   E L  SG+R S+     V  +  +   +   
Sbjct: 126 RFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIH 185

Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274
            K        L       L                   +  F+N+  + +  T       
Sbjct: 186 GKGNKERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLN 245

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               K+ ++     H +R   AT   + GA    +    G   +   + Y   
Sbjct: 246 QMIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 298


>gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Paenibacillus polymyxa SC2]
          Length = 314

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 32/282 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP--- 130
           +Y +      L+ ++  +++    Q        G      +   H+   +   K      
Sbjct: 10  QYMEEE--KGLSRSTLEAYQRDVQQFAEFAESCGLEQPDNVQRSHLVLYLGHLKEQGKAA 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           ++  + + S+R  F + +R+     +P + VE PK   +     T++++++  +      
Sbjct: 68  ATISRSVASIRSFFHFLIREGIAIHDPSVLVELPKATKKKPSVLTQDEIERLLAAPDVSA 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELPDGF 241
            +G + +   E L  +G+R S+     V  ++ ++  +       ++    I+ E     
Sbjct: 128 PQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGKERVVPISREASQWA 187

Query: 242 MKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
              L                   +E  F+N   Q+++   F    K  A +AG+  + + 
Sbjct: 188 QAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIKKYAQEAGISKDITP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   A    + GA    +    G   +   + Y + A R
Sbjct: 248 HTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARR 289


>gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 302

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L+ NS  ++ +   + ++ +GD          IR  ++    T     S  + LT++R
Sbjct: 27  KGLSPNSISAYSADLARFVQFTGDVQ-EPPGVPEIRQYIDHLYQTGLSNRSVGRHLTTLR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
             + + +R+  VA +P   +  P++     +    E++++           G + R   E
Sbjct: 86  NFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMME 145

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG- 251
            L  SGLR S+ C+ G+  L      ++      ++    +           L     G 
Sbjct: 146 VLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAVRAYLESGRPGL 205

Query: 252 -----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
                    F+      M    F     A   KAG+    + H +R   AT   + GA  
Sbjct: 206 LKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHSFATHLLEGGADL 265

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT    R RL
Sbjct: 266 RSVQVMLGHADISTTQIYTHVM-RSRL 291


>gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
 gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272]
 gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273]
          Length = 302

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     +              KA +    
Sbjct: 186 SYAQDALITYIENGRKQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
 gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776]
          Length = 302

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 89/283 (31%), Gaps = 31/283 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----------GDFDYRKITTKHIRSGVE 124
             + +      + +  +  S+   F  +              G     ++      + + 
Sbjct: 6   DRFLRYLQIERNASELTLKSYAEDFGSLHDYLTERVGHITEPGQLGISELR--GYVAYLN 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  ++  + L S+R  F++  R++ V  NP  ++  P+   +  +  T E + +   
Sbjct: 64  ECGYAKTTIARRLASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLE 123

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239
                  +G + R   E    +GLR ++          Q+        K        L  
Sbjct: 124 APPANEVDGLRDRAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERIAPLGK 183

Query: 240 GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
              K L      ++             F+N    ++         +      G+++  S 
Sbjct: 184 HATKALEKWVAVRKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLDQLISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   D GA    +    G K++   + YT  + + 
Sbjct: 244 HTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQR 286


>gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum
           H04402 065]
          Length = 330

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 13/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSS 132
           +  Y  +     L+  +  ++E                 I T  +R    V  +    +S
Sbjct: 58  LQIYLATKKLDGLSRKTLKNYECNLLIFADHL-RKPLSTINTMDLRMFLTVRCKSMKATS 116

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP   +++ K      +P T+E+++  +       + 
Sbjct: 117 VNGQISILKSFFGWLHEEEYIPKNPAKKLKQTKEPKRVRKPLTEEEIELLRQSCKTD-RE 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
               EFL+ +G R S+        +  +  S     K      V        LL    + 
Sbjct: 176 EALIEFLISTGCRLSEIVEVNKDDINWHEMSLFVVGKGDKERKVYFSTKAKILLKKYLLT 235

Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           +            +              K  A  AG+ KS   H  R   AT   ++G  
Sbjct: 236 RADNNEALFVTSRSPHNRLGGRSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMP 295

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G ++    + Y + ++ 
Sbjct: 296 MPIIQHLMGHESPATTQIYAQLSEE 320


>gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
 gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603]
          Length = 299

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            SL+ NS  ++    D++I+   D    K+    I           V      PSS  + 
Sbjct: 18  KSLSANSVGAYLGDLDKLIQ-FADSKLIKLYPDTIGMNDLREFIMWVNELGMIPSSQARI 76

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           ++ ++  +K+ +    ++ +P   +E PK   +     +  D+ +          EG + 
Sbjct: 77  ISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLSKPEGMRN 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +   E L   GLR ++     + +L  +  F     K      V +    +K L +    
Sbjct: 137 KTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERLVPIGAQAIKFLKIWLQE 196

Query: 252 KETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
                                 +++     +  K  A K G+ KS   H  R   AT   
Sbjct: 197 VRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFRHSFATHLI 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + GA    +    G +++   E YT   DR  L
Sbjct: 257 EGGADLRAVQEMLGHESITTTEIYTH-LDREYL 288


>gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1]
 gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1]
          Length = 292

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 33/298 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
           +   +  Y         +  +  ++ +   Q ++  GD D  +IT   I   R  +++ +
Sbjct: 3   ISECVELYLSYI--SDRSAYTVRNYRTDLKQFVQSVGDKDITEITKADIAKFRMFLQANR 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L S+   F++ +  E ++ +P     RPK   +     + E++Q+      
Sbjct: 61  RKSSTIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSC- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230
           E    +     +L +G+R S+        +                              
Sbjct: 120 ENLLEKTVIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGSEVAYIKIK 179

Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   V +    + +L           +       +            +++G+    
Sbjct: 180 GKGGKERVVPVSGKPLNILLQYLDKNRDERLF----PFSYHTLRRLISNIGSRSGIPLHP 235

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           H +R  +ATI+  +GA    +    G  +      Y K        +K +R +S  +D
Sbjct: 236 HKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQ--LVKATRTLSESID 291


>gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
 gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19]
          Length = 298

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYKDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657]
 gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657]
          Length = 330

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 94/301 (31%), Gaps = 15/301 (4%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESY 98
                  +  +      +  +        T  ++  +  Y  S     L++ +  +++  
Sbjct: 22  PEIDQRKVRTIAEEVLYKYRVLPEETGLVTSDIEEKLQIYLASKKLDGLSLKTLKNYQYN 81

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                          ITT  +R  +  R      +S    ++ ++  F W   +EY+  N
Sbjct: 82  LAIFADHL-RKPLGTITTMDLRMFLAVRCKNMKATSVNGQISILKSFFGWLHDEEYIPKN 140

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   +++ K         T+E+++  +       + +   EFL+ +G R S+        
Sbjct: 141 PAKKLKQTKEPKRLRHAMTEEEVELLRQASKTD-REKALVEFLISTGCRLSEVVGVNKDD 199

Query: 217 LQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQF 269
           L  +  S     K      V        LL                       ++     
Sbjct: 200 LNWHEMSLNVIGKGNKERKVYFSTKAKILLKKYLLTRKDDNEALFVTSKRPHGRLGGRSV 259

Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A +AG+NKS   H  R   AT   ++G     L    G ++    + Y + ++
Sbjct: 260 QREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSE 319

Query: 328 R 328
            
Sbjct: 320 E 320


>gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
 gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181]
          Length = 300

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 20/273 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127
           K  I +Y     +   L+  +  S+      +  +    D +      IR       ++ 
Sbjct: 4   KDYIEKYTDYIKFEKRLSALTIKSYLRDIRLLDSELQGKDLQSYQVDDIRRGISVFHAKG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184
               S  + L+S R  F +   +   ++NP + ++ PK K    +  + +   +      
Sbjct: 64  INGKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLVSITD 123

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+     +  +  +  +     K      V +    ++
Sbjct: 124 KSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGSHALQ 183

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRK 291
            L    + ++     N +                      K  A K G+      H +R 
Sbjct: 184 ALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPHLLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+    +      +    G   +   + YT 
Sbjct: 244 SFASHLLQSSQDLRAVQELLGHANISTTQIYTH 276


>gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301]
 gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301]
          Length = 294

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 88/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           + +Y +   +   L+  +  ++      +   + +     +T   IR  + +      + 
Sbjct: 4   LDDYLQHLTFERGLSALTLKNYARDIQLLESLADNTALDTVTNTQIRRYIATLHGRGLSG 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L++ R  + +    +    NP + +  PK      +  + +   +F     +G 
Sbjct: 64  KTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVDIKGDGP 123

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236
              +     E    SGLR ++     +  L             N   I    +  +  ++
Sbjct: 124 LERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRIVPMGSHAVSAIQ 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
                  L+ +  I     F+    +++         K  + K G+N S   H +R   A
Sbjct: 184 TWLQSRALIKIADINPNALFVTQQGKRITPRAVQYRVKEWSIKQGLNISMHPHLLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    +      +    G   +   + YT   D   L 
Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQIYTH-LDFQHLA 280


>gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 345

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 90/320 (28%), Gaps = 20/320 (6%)

Query: 17  RHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G I ++     G+  R              Y  AL       + + +      +    
Sbjct: 5   KRGNIWWFSVTIKGKQFRFSTKTTDRKKATEIYAKALLELDNPTKDVEN----QISFGEF 60

Query: 75  IS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
              +Y   +        S  S + YF  I          +ITT+ I           TP+
Sbjct: 61  FENQYLPFSE----RQASHQSKKYYFKVIPEWFKKIPINQITTRDIELLQGDLLKGRTPA 116

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGS 190
           S  + + +++   + A   E         V+R K     ++        +  K       
Sbjct: 117 SVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQRLRFLSLEECHKLIEVAEP 176

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +      L +G+R  +        +   +    ++  K G    + + D    L    
Sbjct: 177 HLKPIIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKTKNGERRDIPMNDTLKILFRDL 236

Query: 249 PIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
              +               + +     F+    +AG+ +   H +R   A+     G   
Sbjct: 237 IKNRRLDSDYVFLNPETGKRLTDIKRSFRTACKRAGITDFRFHDLRHTFASHLIMNGVDL 296

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G KT+     Y+ 
Sbjct: 297 KTVQELLGHKTIKMTLKYSH 316


>gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
 gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A]
          Length = 310

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 90/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129
              Y K       + ++  ++    +++           +  +        + +      
Sbjct: 15  FRRYLKLE--KGYSEHTIDAYMRDIEKLSSFLEAEKIDVLDVRLEDLERFTACMSELGIG 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----F 185
             S  + L+ +R  +++ +   Y+ I+P   +E PK+        +  ++    +     
Sbjct: 73  ARSLSRVLSGIRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLT 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
             EG + +   E L   GLR S+     + +L      ++          V +    ++ 
Sbjct: 133 KWEGQRNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEE 192

Query: 245 LAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
           L    + +    I          N     +  T   I  K  A  AG+ K+   H +R  
Sbjct: 193 LNYWFLDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    + A  G +++   E YT 
Sbjct: 253 FATALLEGGADLRSIQAMLGHESIVTTELYTH 284


>gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 290

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 92/277 (33%), Gaps = 19/277 (6%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
             L   +         L+ N+  ++    ++I  +      D+       + + V     
Sbjct: 2   SDLTDRFLDHLWLQERLSANTLAAYRRDLNKIAVRLAGQGEDWLSADGSGLAAVVYHPDE 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              S  + L++ +  + W +  E ++ +P   +  PK++       ++  ++   +    
Sbjct: 62  KTRSQARALSACKRFYGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAAPDT 121

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTII 233
               G + +   E +  SGLR S++ +  +  +                 +         
Sbjct: 122 DSPHGLRDKALLELMYASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLVPMGEEASY 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            +E      + + +     +  F+   +  ++     +     A  AG+ + S H +R  
Sbjct: 182 WIERYLAQARPVLLKNARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIRHLSPHSLRHA 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT   + GA    + +  G   +   + YT  A+  
Sbjct: 242 FATHLVNHGADLRVVQSLLGHADISTTQIYTHVANER 278


>gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 279

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 19/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++++       + N+   +  +   ++R         IT   +             + 
Sbjct: 8   LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 66

Query: 135 QFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             L     ++R  FK+        ++   ++  PKR  +  +  +++++++     SE  
Sbjct: 67  NSLYLATKAIRSYFKYKN------LDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           +       L YSGLR S+ C   ++ +  N   +     K      V +    ++ L   
Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 180

Query: 249 PIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
              +E             K++  Q     K  A KAG+ K  + H +R   AT     G 
Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G  +V   + YT   D
Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265


>gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
 gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM
           12614]
          Length = 307

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 33/301 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +  + +        A N+   +    +      G        ++ I + +          
Sbjct: 7   LENFLEMLAAERGAAENTLAGYRRDLEDFSGFLGRKSLASAQSEDISAYLGDLNRRGFAE 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S  + L++++  +K+   +     +P  ++  PK++    +  + ED+ +        +
Sbjct: 67  TSQARRLSALKQFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLIETARAET 126

Query: 191 --------------QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITV 235
                         +     E L  +GLR S+         L++        K G    V
Sbjct: 127 ERPRKSATARLRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLV 186

Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            L       +                   F  + D   +    F+   K  A  AG++  
Sbjct: 187 PLSRAAQAAMKDYVGLRAAEGAYEKSPWLFPSHGDSGHLTRQHFARELKDLAVAAGLDAG 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
             S H +R   A+     GA    +    G   +   + YT   D R+R  ++++  ++ 
Sbjct: 247 KISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHPLAK 306

Query: 342 V 342
            
Sbjct: 307 K 307


>gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium
           salmoninarum ATCC 33209]
          Length = 312

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 39/289 (13%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            + EY +       LA N+  ++     +        G     +I+ K++    ++    
Sbjct: 4   ALREYLQHLAVERGLAANTLAAYRRDLTRYTNFLASQGVRTPEQISRKNVTDFAQALSTG 63

Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     SA + + ++R + K+   +     +P   V  P       +  +  ++ +
Sbjct: 64  SDGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAEVTK 123

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------- 218
                   +    + R   EFL  +G R S++    V  +                    
Sbjct: 124 ILEASGSDTATGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSGPAVVRLFG 183

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
             +    +     G             LL+ T       F+N    +++        K  
Sbjct: 184 KGSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQSAWAILKTA 243

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A KA ++K  S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 244 AEKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 292


>gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
 gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322]
          Length = 299

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR- 126
              L + Y         +  ++ +++         ++ SG+ +Y  +    +R+ +    
Sbjct: 6   WPELFARYL--IVERGYSEKTKKAYQEDIQHFFLFLKTSGNDNYLTVEHLDVRAYLSELY 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +++ +S  + + S+R  +++ ++ E +  NP   V   K++    R + +++M     
Sbjct: 64  DQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFE 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     + +   E L  +G+R S+     V  +      +    K      V    
Sbjct: 124 SAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGS 183

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                L                      F+N+  +++  T           K+ +     
Sbjct: 184 FAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
 gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676]
          Length = 299

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 94/287 (32%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +        G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDMETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411]
          Length = 299

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           + L++ Y +       ++V++  +++   D+ +   G    +++T   I        +  
Sbjct: 7   RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SSA + L ++R L  +A     +  +  + V  P +     +  +   ++   +  
Sbjct: 67  NLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNAV 126

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
             G        + R   E L  +G R ++     V  L      +    K G    V L 
Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186

Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
              ++ +    +              F+NN   ++            A  AG+   S H 
Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G  +V   + YTK +
Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVS 284


>gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC
 gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8]
 gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11]
 gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46]
          Length = 298

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
 gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV
           09V1-c]
          Length = 300

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 95/276 (34%), Gaps = 27/276 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIR---SGVESRKHTP 130
           Y K+    + ++N+  ++     +         G  D+ K++++ I      +  +K   
Sbjct: 7   YLKNE--RNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYLAQKKDKR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
           S+  + ++++R  +++  ++  + +NP   +       +       ++M +         
Sbjct: 65  STQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKSISTTT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
             G +     E    +G+R S+     ++ +   +  I    K      V   +     L
Sbjct: 125 PLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFGEEAKTAL 184

Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                                F+N++  ++ +       K     AGV+ S   H +R  
Sbjct: 185 NNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVHPHMLRHT 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   + GA    +    G +++   + YT    +
Sbjct: 245 FATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 280


>gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
 gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666]
          Length = 300

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 24/274 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTPSSAIQFLT 138
            L+ N+  ++                            +     +R      +SA + LT
Sbjct: 21  GLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
             +  F+WA+R+  + ++P L ++  K+     +  ++  ++   +  SE    G + R 
Sbjct: 81  VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRA 140

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----- 248
             E +  SGLR S+       H+  N   ++          V       + + +      
Sbjct: 141 MLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEAR 200

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                    +  F+ N    M+   F +  K  A  AG+    S H +R   AT   + G
Sbjct: 201 PAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTLRHAFATHLLNHG 260

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           A    +    G   +     YT  A      +  
Sbjct: 261 ADLRAVQMLLGHADISTTTIYTHVARERLKALHA 294


>gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000]
 gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000]
          Length = 288

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 93/263 (35%), Gaps = 22/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
             L+ N+  S+       +   G       K T K I   +  RK       +  +   S
Sbjct: 3   KGLSQNTLESYRRDIVIYLDFLGRNKKTILKATRKDIEKFLSERKEQGSKSRTVARNKVS 62

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +  L+K+ V + Y++ NP  ++E  + K       T E++    S  +E    G + +  
Sbjct: 63  IVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAI 122

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET 254
           FE +  SGLR S+ C   ++ +  +   +K    G     V + D  + +L         
Sbjct: 123 FELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRV 182

Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             +          N    K++        K    K+G+ K+   H +R   AT     GA
Sbjct: 183 VMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGA 242

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               +    G   +   E YT  
Sbjct: 243 DLRSVQRMLGHSDITTTEIYTHV 265


>gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134]
          Length = 305

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 24/269 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140
            L+ N+  ++      + R            I    + +   +R      SS+ + L   
Sbjct: 27  GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 86

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  ++WA+R++ +  +PC+ +   K+     +  ++  ++            G + R   
Sbjct: 87  RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 146

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT------ 248
           E +  SGLR S+  +     +  N    +    K      V         L         
Sbjct: 147 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 206

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+    + M    F    K  A  AG+    S H +R   AT   + GA
Sbjct: 207 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 266

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A R RL
Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294


>gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 300

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 22/293 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKH 128
           LI +Y         L+  ++  +       +      DY  IT   I + +    ++R  
Sbjct: 10  LIEDYTDYLAMQRRLSEATQSVYAHELALFLAA--GSDYETITASLIEAYIVIQVQTRHL 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +  S  + L+++R  F +    +    NP L ++R ++K    +  +   +         
Sbjct: 68  SERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQVDALLESIDT 127

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               G + R  FE +   GLR S++C   V   Q     +  ++    I        M +
Sbjct: 128 SDLLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTSIRVVGKRHKIRIIPVGEIARMWV 187

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                     L    +  +  F+     ++        F A    AG++   H +R   A
Sbjct: 188 DAYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIAYCDVAGLDAKVHTLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           T   + GA    +    G   +   + YT   D  +L     +  + + D +D
Sbjct: 248 THLLEGGADLRSVQELLGHSDIKTTQIYTH-VDTKQLQKAYEQFHAGIHDKED 299


>gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
 gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216]
          Length = 372

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 107/363 (29%), Gaps = 54/363 (14%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------T 42
            P ++L P V     R+G+       G+   IRL    E                     
Sbjct: 7   KPKIKLSPVV-----RNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAENFVLAE 61

Query: 43  FIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           F   Y+        A+  + P++E    P             Y +       + ++   +
Sbjct: 62  FFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVY 113

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
            SYF    +         +T   I       +  +  +     Q + +++    +   + 
Sbjct: 114 TSYFRDFQQYFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIK----FYYEKV 169

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                 C  V R KR+       +KE++++         +    F  L  +GLR S+   
Sbjct: 170 LGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMFSILYSAGLRISELLE 229

Query: 212 AGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNA 266
                +        ++  K        L    MK L       +      + +       
Sbjct: 230 LKPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTE 289

Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  S   KA A +AG+ K    H +R   AT   + G     +    G   +   E Y  
Sbjct: 290 SIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVH 349

Query: 325 GAD 327
            AD
Sbjct: 350 IAD 352


>gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026]
          Length = 307

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 106/302 (35%), Gaps = 27/302 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126
             LI +++   ++  + + N+  S+ +      D      G   + ++ ++ +   +++ 
Sbjct: 6   DKLIKQFQDYLNYERNYSKNTVNSYLNDLIEAKDFFRENGGFSGWDQVKSRDVEIFLQNL 65

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + ++  + ++S+R  +++ V++E +  +P  ++     + +  + + +++M+Q  
Sbjct: 66  ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R  FE    +G+R S+     +  +  ++  I    K      V   
Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 L                     F+NN  QK+         +    KAGV     
Sbjct: 186 KDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT   + GA    +    G +++   + YT       L     +        
Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVT-MKHLQADYQKFFPRKDKK 304

Query: 346 DD 347
           D+
Sbjct: 305 DE 306


>gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
 gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B]
          Length = 311

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 96/288 (33%), Gaps = 33/288 (11%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124
            T+  L+  Y         LA N+   +     +    + + G  D R +T +HI + + 
Sbjct: 4   RTVGDLVEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFLEQRGTTDPRAVTEEHITAFLA 63

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +           SS+ + + ++R L ++A      A +P   V  P       +  T 
Sbjct: 64  ALRTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITV 123

Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
            ++++  +          + R   E L  +G R S++    +  L  +   ++   K   
Sbjct: 124 AEVERLLAAVDGHAPRELRDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGKGSK 183

Query: 232 IITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKA 277
              V L       L                        F+N    +++        +  A
Sbjct: 184 QRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLRRAA 243

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 244 LRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYT 291


>gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 324

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 86/296 (29%), Gaps = 42/296 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG---V 123
           ++  I EY +   +  + + N+  ++    +       D        IT + +      V
Sbjct: 3   VREAIDEYLRYIRFERNFSANTLEAYARDLNAYCEFLTDKHIDTPVHITRRVVEEYLSYV 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +    PSS  + +++++   ++ V ++    +P   +  PK+     +  +  ++++  
Sbjct: 63  ATLDKAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLL 122

Query: 184 SFWSEG----------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                                        + +   E L   GLR S+ C     ++    
Sbjct: 123 DEPFLQELQPAAHTTKQGTTTMTKAACFWRDKAILELLYGCGLRVSELCNLTCDNVSRTD 182

Query: 222 FSIKTQKT-GTII-----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             ++                         D +   L          F++     ++    
Sbjct: 183 EVLRVIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQAV 242

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +      G+     H +R   AT   + G     +    G  ++   + YT 
Sbjct: 243 FALVEKYGRMVGIRGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTH 298


>gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 301

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 30/294 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKIT----TKHIRS 121
            +  I E+        + ++N+   +                      IT     + I+ 
Sbjct: 3   FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLHDITKTHVRRFIQH 62

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----K 176
            +      P +  + ++ ++   K+ V++  +  +  + ++ PK  ++     +     K
Sbjct: 63  QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +       +  L F+ L  +G+R S+      + +  +  +I+    G    + 
Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN---K 284
                +  L  + +     +  +  Q +         N       FK    KAG+     
Sbjct: 183 PLHPMVVPLIKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242

Query: 285 SAHGVRKFSATISADAG---ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           S H +R   AT+             +    G +++   + YT    ++ +  I+
Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIE 296


>gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
 gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516]
          Length = 307

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 79/290 (27%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L      +   A      +  +  ++ +     +           G     ++    +R+
Sbjct: 9   LTDAAEAWLAHARALRGASEKTINAYRTDVLGFLAFMAEHHGGQQGLAPLARVGVSDMRA 68

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +   +    SA    + L++++  ++W   +E       LS   PK + +  RP   + 
Sbjct: 69  WMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLSTRSPKFQKKLPRPLAVDA 128

Query: 179 MQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            Q                ++       L   GLR S++       +          K G 
Sbjct: 129 AQAMIDRVELQAREGWVAARDVAVVTLLYGCGLRISEALGLTGAAVPLPEVVRIVGKGGK 188

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284
              V +       +             +            N        +    + G+  
Sbjct: 189 ERVVPVIAPARDAVDAYARLCPHPLEPHLPLFRGVRGGALNPRAIQKVMEQARLQLGLPA 248

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   H +R   AT    AG     +    G  ++   + YT   D  RL 
Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 297


>gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645]
 gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645]
          Length = 291

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 25/282 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
               ++Y +S     LA N+  ++     +  R  G  + R +    +   V        
Sbjct: 2   SAAFTDYLQSE--CHLAANTVAAYRRDLVRFERWLGAREIRTLRVGELSDYVAWLYKEEL 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + + S+++ F++   +  +  N    +   K             +    +    
Sbjct: 60  APASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWS 119

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGT 231
                 + R   E L  +G R S+     +  +  +   +K              QK+  
Sbjct: 120 EDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSAR 179

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
           ++   L +   +L           F++   ++++        K  A +AG++   S H +
Sbjct: 180 VVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSL 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT     GA    +    G  ++   + YT   D+ RL
Sbjct: 240 RHSFATHLLAGGADLRHVQEMMGHASIATTQIYTH-VDQSRL 280


>gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus
           Cloacamonas acidaminovorans]
          Length = 298

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 29/282 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125
           +  I+++         +  +  +++   +Q           G+ D + IT  +IR     
Sbjct: 2   EKYIADFCNYLALEGKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRF 61

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               P    S  +   ++   F++  R  ++  NP   ++RPK +    + +T+E+++  
Sbjct: 62  LNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTL 121

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            S     S    + +   E L  SGLR S+     +Q +      ++          V L
Sbjct: 122 LSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPL 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAK----ATKAGVNK 284
               ++ +      +  F   N              +  Q  I  K      A   G   
Sbjct: 182 GSYAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKG--Y 239

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S H +R   AT     GA    +    G   +   ETYT  +
Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHIS 281


>gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
 gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259]
          Length = 296

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 96/293 (32%), Gaps = 25/293 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129
            L  +Y+        L+ N+R ++    +++I        D   +    +    E+    
Sbjct: 2   ELTDKYKTYILLEQGLSDNTREAYMHDVEKLIDFLQQEGIDILNVKLDDLHRFTEALTDV 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
                S  + L+ +R  + + + + Y+  +P   +E PK         + E++       
Sbjct: 62  GIMARSINRILSGVRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEEVDALLAVI 121

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                EG++     E L   GLR S+ C   +  L  +   I+          V +    
Sbjct: 122 DQSTKEGARDHAIIEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRA 181

Query: 242 MKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           +K L    + +    I               + ++        K  A +AG+ K  S H 
Sbjct: 182 VKELKNWLLIRHEINIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +R   AT   + GA    +    G   +   + YT   DR  +  +       
Sbjct: 242 LRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYT-NIDRRFIRQQILDHFPR 293


>gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
 gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62]
          Length = 304

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 89/290 (30%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L+  +  +  S A     + N+  ++++     +           G     +I    +R+
Sbjct: 6   LRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICVSDMRA 65

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + S +    +A    + L++++  + W   +E       LS   PK + +  RP  ++ 
Sbjct: 66  WMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRPLAEDA 125

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +                ++       L   GLR S++     + +          K G 
Sbjct: 126 ARAMIDTVELQAAEPWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQTLRILGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284
              V +       +A            +            N        +A   + G+  
Sbjct: 186 ERVVPVIPQACDAVAAYLRQCPYPVEPDAPLFRGVRGGALNPRAIQKVTEAARLQLGLPA 245

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   H +R   AT    AG     +    G  ++   +TYT   D  RL 
Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYT-AVDTARLM 294


>gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 295

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125
             +  +         LA NS  S+     + +      +       R +      + ++ 
Sbjct: 3   QYLDLFLNYLLVEKGLAKNSLDSYGRDMIRYLDFLEKRNCGEPSAVRPVDVADFLAHLKD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+++R+  ++ + + Y   NP   +E PK   +  +     +++   + 
Sbjct: 63  CGLAPRSRARALSAVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREVEALLAA 122

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
               S    + R   E L  +GLR S+    G++ +       +   K G    V + + 
Sbjct: 123 PGSDSAQDMRDRAMLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLVPMGES 182

Query: 241 FMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHG 288
               ++            N             +M    F    K +A +AG+ K+   H 
Sbjct: 183 ACAAVSRYLAEARPEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKTISPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    + A  G   +   + YT    R RL
Sbjct: 243 LRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVT-RERL 284


>gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703]
          Length = 303

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+      ++    + G   ++ +    +RS V   K   
Sbjct: 12  VEAFLRYLKVERQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   V  P+      +    +++ +      
Sbjct: 72  LHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+   +       K      V +    +K
Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSEMVGMNCKHVDLASGDVWVMGKGSKERKVPIGKTAVK 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F+ N  ++++A      F     K GV  +   H +R   A
Sbjct: 192 WLEHWLELRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
 gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa
           W1219]
          Length = 297

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR 126
           L     ++          +  +  S+E+   Q +    +      +K+T + ++  +  +
Sbjct: 3   LDQAFQQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFLSQQ 62

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +S +   TS+R   +  +       NP   ++  K +T      + E+++Q  +
Sbjct: 63  STIKSSNSVVHMATSIRNFHE-DIEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQLLN 121

Query: 185 FWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
            ++         R   E +   GLR S+ C   V  +Q     ++   K      V +P+
Sbjct: 122 SFTRDDPKQELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPIPN 181

Query: 240 GFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L                 TFFIN+   ++ A    +  K KA + G   + + H 
Sbjct: 182 QVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHS 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT    AGA    +    G   +   E YT   +R 
Sbjct: 242 LRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQ 282


>gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 313

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 106/296 (35%), Gaps = 32/296 (10%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
            + E+        +L+ N+  ++       I      +   +   H       S ++  +
Sbjct: 13  YVDEFIAYLRTVRNLSDNTTRAYSVDLASYISWCKREELDPLQATHRSLRAYLSYLDQAR 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++  +  + L+++R  +KW  +++Y+ ++P L +  P+      +  + ED+Q+      
Sbjct: 73  YSARTLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDEDVQKLLLSCD 132

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
             +    + R   E +  +G R S+      + +  +   ++   K      V L     
Sbjct: 133 TDTAVGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERDVPLYKTAR 192

Query: 243 KLLAMTPIGKETF------------------FINNDKQKMNATQFSIWFKAKATKAGVN- 283
             L     G  +                   F++    +M+A      F+    KAG++ 
Sbjct: 193 DWLEAYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETYVKKAGLDP 252

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
             + H +R   AT     GA    +    G +++   + YT    +R++   K + 
Sbjct: 253 MLTPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAH 308


>gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
 gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035]
          Length = 306

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 92/289 (31%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +S +  +       A N+  ++       +R          G     +ITT  +R+ 
Sbjct: 7   RDALSTWLATQKALKGAAANTIDAYARDVGDFLRFMTLHNGETQGLGALSRITTSDMRAW 66

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +     P S  + L++++  ++W   +E       L++  PK + +  RP + E  
Sbjct: 67  MAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLAIRSPKFQRKLPRPLSPEAA 126

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               +            ++ +     L   GLR S++       L          K G  
Sbjct: 127 SDMINTLDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLTGADLPLGQVLRIIGKGGKE 186

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V + +     +A            N    +       +        +    + G+  +
Sbjct: 187 RLVPVIEPARAAVAQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQARAQLGLPAT 246

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT G D  RL 
Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLM 294


>gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
 gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635]
          Length = 298

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 21/275 (7%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHT 129
             +  +     + + ++  S++    Q  +       +  T      ++  S + S    
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYKDARNYLSYLYSNHLK 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E 
Sbjct: 66  RTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEED 125

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244
           +    + R+  E L  +G+R S+      Q +           K      V       + 
Sbjct: 126 TSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQS 185

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSA 294
           +       +     N            +              + AGV     H +R   A
Sbjct: 186 IENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    + +  G   +     YT  +++ 
Sbjct: 246 THLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 299

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
              K    S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  YDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
 gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4]
 gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17]
          Length = 302

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK+     +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKDLSIPKFLYVEELEKLF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +        G + +   E +  +G+R S+     +  +  ++ +I  T K      V   
Sbjct: 126 EVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                   +  F+N   + +              KA +    
Sbjct: 186 SYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
 gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271]
          Length = 331

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVES 125
             I+ + +        +  +  +++             G  D ++I  + +R   + +  
Sbjct: 32  EAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNE 91

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQ 180
           + +  +S  + L+S+R  F + + Q ++  NP   V+   +K    +       T+    
Sbjct: 92  QAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDS 151

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
            +K       + R+  E L  +G+R S+     ++ L   +  I+   K      V L D
Sbjct: 152 LYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGD 211

Query: 240 GFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT--KAGVNKSAHG 288
              + +             N+            M+  Q     K+        +    H 
Sbjct: 212 SATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHK 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT    D++R
Sbjct: 272 LRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLR 314


>gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
 gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 94/295 (31%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--- 128
           I  Y+        L+ NS  ++ +  D++          Y  +T   ++  V        
Sbjct: 8   IERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQFVARLHDIGI 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
            P S  + ++ ++  +++    +Y+  +P   +E PK   +     T  ++         
Sbjct: 68  HPRSQARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSILDTIDL 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243
              EG + R   E L   GLR S+        +  +  F     K      V + +  +K
Sbjct: 128 TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETAIK 187

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291
            +      +    +    + +          +        K +   AG+ K  S H  R 
Sbjct: 188 EIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTFRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             AT   + GA    +    G + +   E YT   DR  L  +           D
Sbjct: 248 SFATHLLEGGANLLAIQEMLGHEKITTTEIYTH-IDRQFLRKEILEHHPRSKPRD 301


>gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
 gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044]
          Length = 292

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 22/269 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PS 131
           Y  S     L  N+  +++      I      G   + ++  + I   +   K      S
Sbjct: 11  YLGSE--KGLTQNTIEAYQRDVFSFISHLESKGIQGFNEVGQEEIVDFLSYLKSRQLAVS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           +  + L +++V F++  R+  V  N  L ++ PK         T E+M+   +       
Sbjct: 69  TISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEMEILLNQPDPETS 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           EG + R   E L   GLR S+ C+  ++ L+     +  +     I          +   
Sbjct: 129 EGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRVFGKGRKERIVPLGSHASQAINRY 188

Query: 248 TPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
                +          F+N   + MN        K    +AG+ KS   H +R   AT  
Sbjct: 189 LAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSPHTMRHSFATHL 248

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            D GA    +    G  ++   + YT  +
Sbjct: 249 LDNGAELRVIQEMLGHASISSTDRYTHIS 277


>gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM
           16992]
          Length = 317

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 92/298 (30%), Gaps = 42/298 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126
            + +I ++         L+  +  ++ +   +  +   +    D   +TT+ + + V   
Sbjct: 4   FERMIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLANRGINDITSVTTQDVENYVAFL 63

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  SA    + L S+    ++AV +  VA +    V+ PK  +        +++ +  
Sbjct: 64  DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123

Query: 184 SFWSEG------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                                    + +   EF+  +G R S++C A +  +       +
Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVMLRDKALLEFMYATGARVSEACGANLDDVDTESRIAR 183

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270
              K      V +     + ++           +  K                 +     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQSVW 243

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +    +A ++K    H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 244 EIIRVAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 301


>gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 314

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 24/292 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR--- 126
            LI  Y+        L+ NS  S+    D++     D     R++  +H+ +        
Sbjct: 8   QLILRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIEDMGLSLREVELQHLNNFAAHLLDL 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+ ++  F++   +E +  +P   ++ P    +     T  ++       
Sbjct: 68  GISMRSLARVLSGVKSFFRFLTLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDSLLGAI 127

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG- 240
            E     S+     E L   GLR S+ C      +  +        K      V +    
Sbjct: 128 DEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPKA 187

Query: 241 ---FMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                + L            +         Q ++        +  A +AG+ K  S H +
Sbjct: 188 VADVQRYLNDPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEISPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           R   AT   + GA  H +    G +++   E YT   DR  L     R    
Sbjct: 248 RHSFATHLLEGGADLHAIQLMMGHESIATTEVYTH-VDRSALRADILRYHPR 298


>gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12]
 gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
 gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12]
 gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1]
          Length = 301

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ 
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                        + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
 gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b]
          Length = 329

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 31  RRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA- 88
           R+I L   P    F+  Y  A  G  P+       +  P +L WLI+++ KS      A 
Sbjct: 7   RKIALGVDPDHPEFMERYTRARNGKRPEIPREED-KAIPQSLSWLIAKFEKSMQERVRAG 65

Query: 89  ---VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
                +     +++D++    GD    ++    I    +S   TP +A   + ++R L+ 
Sbjct: 66  AMHPGTLKQRSAFYDRLRAPYGDKHM-EMPRSKIIEIRDSMIATPGAADNMVKALRALYA 124

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           W+V   +V  NP   + +  R T G  PW+ +D++ FK   S+GS   LA    +++  R
Sbjct: 125 WSVENGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTACR 183

Query: 206 CSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            SD    G QH         +     +K    +TV +       +A   +   T+ +N  
Sbjct: 184 ISDVVILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLNGH 243

Query: 261 KQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +   +A  F  WF+ +  +AG++ +S HG+RK +  + A  GAT + +MA +G      
Sbjct: 244 GKPFASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQAKT 303

Query: 319 AETYTKGADRIRLGIKNSRRISSV 342
           +E YT+G +R RL  +  ++++S+
Sbjct: 304 SEGYTRGVNRQRLAAEAMQKMASM 327


>gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 298

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVVLELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
 gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881]
          Length = 307

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 100/297 (33%), Gaps = 25/297 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           ++ +         L+ ++  S++    +  +  G   +  +T   IR   + +  +  + 
Sbjct: 12  VNAFLTHLASERRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAATLHRKGKSG 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L+++R  F++ +R+     NP + +  PK      +    + +       +  S
Sbjct: 72  KTIQRMLSTLRTFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDAGTHSS 131

Query: 191 -----QPRLAFEFLLYSGLR---------CSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235
                + +   E L   GLR          S   R G   +       +    G   +T 
Sbjct: 132 EPLALRDQAMMELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQLPVGKPALTA 191

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
                 ++ L +    +   FI+ + ++++ +      K  A + G++     H +R   
Sbjct: 192 VRRWLKVRPLLIKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHLHPHKLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           AT   ++      +    G   +   + YT   D   L         R     D D+
Sbjct: 252 ATHLLESSGDLRAVQELLGHADLATTQVYTH-LDFQHLAQVYDGAHPRAQRRKDEDE 307


>gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1]
 gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 287

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 92/268 (34%), Gaps = 24/268 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPS 131
           Y +      ++ N+ +S+     Q      D    +   +T   + S +   E      +
Sbjct: 11  YLRDV--KKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREGKAAA 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187
           +  + L S++  F +   + Y+  NP   +  PK + +     + E++ +  +       
Sbjct: 69  TISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPGGRTP 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  + +   E L  +G+R S+     + H+   I  I    +G   T+       K L  
Sbjct: 129 KEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGRERTIPFGRVAKKALDD 188

Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                          +  F+N    +M+   F    K    KAG+  + + H +R   A 
Sbjct: 189 YLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTLRHSFAA 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
               +GA    +    G   +   + Y 
Sbjct: 249 HLISSGADMKAVQQILGHSDMATTQMYA 276


>gi|126464049|ref|YP_001045162.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105860|gb|ABN78390.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 360

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 124/350 (35%), Gaps = 29/350 (8%)

Query: 9   PFVTKERTR--HGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             V K + R   GK+ ++Y+    G +I    P    F                    P 
Sbjct: 2   KGVHKVKRRLVSGKVAVHYYAWRGGPKIE-AEPDSPEF-------RAAYDAAHAARQKPV 53

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----S 121
               TL+ LI+ Y+++  +  LA  ++  +  +  QI  + GD   + +    +R     
Sbjct: 54  HHDGTLQALITAYQQTPAFTVLAPTTKAGYIRHIRQIEAEFGDMPLKALADPRVRGEFLD 113

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +     +  SA    + + ++  WA  +  +  NPC    R    +     WT+  + 
Sbjct: 114 WRDRLGQKSKRSADYAFSVLALILAWAYDRRKIPSNPCEKPGRLYAGSRADDIWTESQIA 173

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            F     +    RL F   +++G R +D  +         +  +K  KTG  + + +   
Sbjct: 174 AFLDKAPK--PVRLPFLLAIWTGQRQADILKLTWSAYDGQVIRLKQSKTGRHMVIPVARQ 231

Query: 241 FMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
             + L          T    +  Q   +  F   F      AG+   + H +R  + T  
Sbjct: 232 LREALDAAKARRKTLTICETSRGQPWTSDGFKTSFGKAQAAAGIEGVTFHDLRGTAVTFL 291

Query: 298 ADAGATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342
           A AG +  E+ A  G  ++  AE      Y  G DR RLG     ++   
Sbjct: 292 ALAGCSVPEIAALTGH-SLKDAEAILSKHYL-GRDR-RLGESAVAKLERH 338


>gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
 gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23]
          Length = 303

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128
           ++  Y +      +++ N+  +++    +++            +T   +     S     
Sbjct: 7   IVKAYVRYLKLQRNMSGNTLDAYQRDLRKLLDYLEHEQLAISDVTLADLEHFSASLHDIG 66

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             P S  + L+ +R  FK+     Y   +P   +E P+         T +++ + +    
Sbjct: 67  IHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEESID 126

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   ++   K      V +    +
Sbjct: 127 LSKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPISPKAI 186

Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           + L      +    I          N     +  T   I  KA+A +A + K+   H +R
Sbjct: 187 QELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + GA    + A  G + +   E YT 
Sbjct: 247 HSFATALLEGGADLRFIQALLGHEDIGTTEIYTH 280


>gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
 gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 89/277 (32%), Gaps = 22/277 (7%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126
             LI E+  +      LA  +  ++        + +     +   +           +  
Sbjct: 5   ADLIDEFCTTLWLEEGLAKATLQAYRGDLQQLGNWLDEHFAENLLQASNEHIRNHVHDLL 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +  PSS  + L+S +  + W         NPC  ++  KR     +  +++ +    S  
Sbjct: 65  ELKPSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSAP 124

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G + +   EF+  SGLR S+     ++ +  N        K      V + +  
Sbjct: 125 DLSNAAGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGEPA 184

Query: 242 MKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
              + +               +  F+ +    M    F    K  A  AG+N   S H +
Sbjct: 185 RLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 RHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVA 281


>gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152]
 gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152]
          Length = 385

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 17/272 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127
           K L++ +         + ++  ++  +    I          +  +     I      R 
Sbjct: 91  KKLLNGFYLYMKGKRYSESTLKTYTFFIADFINFHSKKACSDLDNRDVELFIEKVFIERN 150

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++ SS  QF++++++   +    +   I        PK+  +     ++E++ +  S  +
Sbjct: 151 YSVSSQRQFISALKIFTNYYPSTKINDIELTR----PKKSKKLPSVLSQEEVLRIISVTT 206

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              + R     L   GLR S+     ++  H++     +K+ K      V L + FM LL
Sbjct: 207 -NLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFMPLL 265

Query: 246 AMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                  E         + +K +A+    + K    KAG+ +  + H +R   AT   + 
Sbjct: 266 KNYYYSYEPKEFFVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLRHSYATHLLEN 325

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G     + +  G    +    YT    R  L 
Sbjct: 326 GVDIRYIQSLLGHSRPETTMIYTH-VKRKDLM 356


>gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
 gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442]
          Length = 302

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKELSIPKFLYVEELEKLF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +        G + +   E +  +G+R S+     +  +  ++ +I  T K      V   
Sbjct: 126 EVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFG 185

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                   +  F+N   + +              KA +    
Sbjct: 186 SYAQDALITYIENGRKQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 321

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 106/304 (34%), Gaps = 31/304 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129
           LI  +          + N+  ++      +  +    +    TT   +H+ + + +    
Sbjct: 15  LIELFLDMMAAERGASPNTLDAYRRDLVDVAARLSSRNLEAATTPDLEHVLASMAADGLA 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            S+A + L++++  +++ +       NP   +  PK+     +  T++D+ +        
Sbjct: 75  ASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDDVDRLFDAASGL 134

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               G + R   E L   GLR ++         ++       T K G    V L +  ++
Sbjct: 135 SGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLVPLTEAALE 194

Query: 244 LLAMTPIGKETFFINNDKQ-----------------KMNATQFSIWFKAKATKAGVN--- 283
            +A   + +E     +  +                  +   +F+         AG++   
Sbjct: 195 AVAAYKVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQILSELTLAAGLDPAK 254

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSV 342
            S H +R   AT     GA    +    G   V   + YT   D R++  ++++  ++  
Sbjct: 255 VSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARR 314

Query: 343 VDSD 346
            D D
Sbjct: 315 TDDD 318


>gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
 gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264]
 gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550]
 gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24]
 gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4]
 gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15]
 gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
 gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC
 gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC
 gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM
           10507]
          Length = 294

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 23/272 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESR 126
            I E+    H     + N+ IS+E   +++                +       S +   
Sbjct: 4   AIREFITYLHNIKQTSNNTEISYERDLNKMAAYLERQGVYNPLKVTETDLNGYLSYLRRN 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   S+  + + S+R  +++  R   +  +P  +++ PK + +     T E++       
Sbjct: 64  KFAASTISRSVASIRAFYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEEVDLLLRQP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           S  +    + +   E L  +G+R S+     V  +  N+  +   +      +   +   
Sbjct: 124 SLDTAKGLRDKAMLELLYATGMRVSELMHLKVSDVNLNLGYVDCSEGARERVIPFGNVCK 183

Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L          F           N   + M+   F    K  A+ AG+  + + H +R
Sbjct: 184 RALVQYLEQGREAFQRKGETDILFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      GA    L    G   +   + Y
Sbjct: 244 HSFAAHMLQNGADIKSLQEMLGHSDISTTQMY 275


>gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 23/270 (8%)

Query: 78  YRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           +     +  + +V +  ++       ++ +  S  FD R IT+  IR  +     R ++P
Sbjct: 13  FLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMDRNYSP 72

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SF 185
            S  + L+++R  F++  R   +  NP   +   +            +M           
Sbjct: 73  RSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLLDLSKGE 132

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
             E  + R   E    +G+RCS+      + +      I+          +       ++
Sbjct: 133 GFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFSKTLEEI 192

Query: 245 LAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
           L+     ++    +  K           N        K + +       +S H +R   A
Sbjct: 193 LSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHVLRHTFA 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   + GA  + +    G  ++   E YT 
Sbjct: 253 TSMLNNGANLNAVKELLGHSSLASTEIYTH 282


>gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis
           URRWXCal2]
 gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC
 gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2]
          Length = 305

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 100/287 (34%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI +++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    +    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289


>gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC
 gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC
 gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2]
 gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
 gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  +R     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVRFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYMENGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 307

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRK 127
           ++  Y +      + + N+  ++      ++                  +H  + +   +
Sbjct: 11  VLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEMTALQLEDLQHFAATLHEFQ 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             P S  + L+ +R  +++ +   Y+  +P   +E P          +  ++   +    
Sbjct: 71  IGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSID 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   I+   K      V +    +
Sbjct: 131 LSKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKERLVPISPRAI 190

Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           K L +    +    I          N     +  T   I  K +A +AG+ K+   H +R
Sbjct: 191 KELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT     GA    + A  G +++   E YT 
Sbjct: 251 HSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284


>gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
 gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp.
           SE45]
          Length = 308

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +  SA      A N+  ++ +   + I           G     ++TT  +R+ 
Sbjct: 10  REALENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAF 69

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +     P S  + L++++  ++W   +E       +    PK + +  RP      
Sbjct: 70  MAHLRGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAA 129

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               E ++   +    G++       L   GLR S++     +          T K G  
Sbjct: 130 RAMIETVEMQSADSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGESLRITGKGGKE 189

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +       + +                        N        +    + G+  +
Sbjct: 190 RIVPVLPVARDAVGIYLQLCPFEPEPEAPIFRGARGGALNPRLIQKVTEKARLQLGLPAT 249

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT   D + L 
Sbjct: 250 ATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDEVHLM 297


>gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
 gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928]
          Length = 306

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 25/271 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTP-SSAIQFLTSM 140
             L+ N+  ++     +        D   +  I    + + + S +    SSA + ++++
Sbjct: 23  RGLSANTLAAYRRDLSRYRVFLDTRDRANFSDIDRADVSAFLASLQDGAASSAARTMSAV 82

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAF 196
           R L ++AV + +V ++    V  P+      +    +D+++  +          + R   
Sbjct: 83  RGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKALPLDDIERLLAATEIDEPMALRDRALL 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           EFL  +G R S++    V  +     ++    K G    V +     + +    +     
Sbjct: 143 EFLYSTGARVSEAVALDVDDIDREDRTVVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPE 202

Query: 256 -------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                        F+N    ++          A A + G+    S H +R   AT   D 
Sbjct: 203 LTRKARSGNGGALFLNARGGRLTRQGAWTVLGAVAERVGLAGRVSPHTLRHSFATHLLDG 262

Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           GA    +    G  +    + YT+   DR+R
Sbjct: 263 GADIRTVQELLGHSSATTTQIYTRVTVDRLR 293


>gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
 gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483]
          Length = 293

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G F+  ++  + IR  + S   
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            ++ L +  I             FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGVVKELLGHESITTTEIYTHA 277


>gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299]
 gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115]
 gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1]
 gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC
 gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC
 gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC
 gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315]
 gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781]
 gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719]
 gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299]
 gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115]
 gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300]
 gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224]
 gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937]
 gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102]
 gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117]
 gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981]
 gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819]
 gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796]
 gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           21172]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLKTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733]
 gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733]
          Length = 301

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ 
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                    +   + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSTLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
 gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS
           18C-A]
          Length = 315

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           K ++  +R+        + N+  ++    D+++R           +T + +         
Sbjct: 8   KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+ +R  +++ V   Y+  +P   +E PK+        +  ++   +  
Sbjct: 68  LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L      ++          V +   
Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPR 187

Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +  L      +    I          N     +  T   I  K  A +AG+ K+   H 
Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   + GA    + A  G +++   E YT 
Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283


>gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
 gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           + L++ Y +       ++V++  +++   D+ +   G    +++T   I        +  
Sbjct: 7   RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SSA + L ++R L  +A     +A +    V  P +     +  +   ++   +  
Sbjct: 67  NLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNAV 126

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
             G        + R   E L  +G R ++     V  L      +    K G    V L 
Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186

Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
              ++ +    +              F+NN   ++            A  AG+   S H 
Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G  +V   + YTK +
Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVS 284


>gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c]
 gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD
 gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 96/294 (32%), Gaps = 35/294 (11%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
           +  TT+   +   + K      L+ ++  S+    + + R +         +T   +   
Sbjct: 22  EDATTIAHFLDALWIKH----GLSQHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R    ++P S  + L+ +R  F +AV   +   NP   +  P       +  T+  +
Sbjct: 78  LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +   +       EG + R   E +  +GLR S+     V  L      ++    G     
Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERL 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277
           V L +     L             +                      +  QF  W K  A
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYA 257

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AG+     S H +R   AT   + GA    L    G +++   + YT  A +
Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQ 311


>gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 322

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 102/302 (33%), Gaps = 23/302 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD 108
              P +    +    P +L   ++ + +       L+ ++R ++ES+   +  +    G 
Sbjct: 2   AREPAKASAPAAEPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELVRLGV 61

Query: 109 FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D+ ++    +RS V         P S    ++++R    W VRQ  +  NP   +  PK
Sbjct: 62  SDWARLEASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPK 121

Query: 166 RKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +     +    ++M Q  +          + R   E +  SGLR ++     +  ++ + 
Sbjct: 122 QGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181

Query: 222 FS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIW 272
                T K      + +    ++ L      +           F++  KQ+++A      
Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPLLAGDEADALFVSKRKQRLSARSVQER 241

Query: 273 FKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                       +   H +R   AT   ++      +    G   +   + YT   D   
Sbjct: 242 LDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH-LDFQH 300

Query: 331 LG 332
           L 
Sbjct: 301 LA 302


>gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 298

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 25/279 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L   +         L+ N+  ++    D+ +      G  D   +T   +   V   +
Sbjct: 4   EALGKLWLDHLAVERGLSANTLSNYRRDVDRYVTWLESAGKTDLNSVTASDLGDYVADLR 63

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SSA + L   R L K+A  +  VA +    V  PK   +     + E++     
Sbjct: 64  RGGLAASSAGRALVVARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLD 123

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVEL 237
                +    + +   E L  +G R S+     V  +       F   T K      V +
Sbjct: 124 ACPTDTPADLRDKALLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQRIVPV 183

Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  +                   F+N     ++        K  A +AGV+K  S 
Sbjct: 184 GSAARDAVEAYLVRGRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDKHISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G  +V   + YT  
Sbjct: 244 HTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHV 282


>gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 384

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 105/350 (30%), Gaps = 21/350 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60
           P         G+  Y  +   GRR   I L      T   A   A+       +      
Sbjct: 27  PGFGLRVLPSGRKGYVVQYRAGRRSRRISLGPATVLTCEQARNRAISIVAAARNGEDPAA 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
                +K  T++ L   + +      +  ++   +     +  +   G      IT   +
Sbjct: 87  ERDAGRKTITVRELAERFDREHIAIRVKASTAGEYRRNLRRFILPALGQLTVTGITRADV 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
                  +H P  A + L  +  +F +A                 K   E    +     
Sbjct: 147 AKFHHDLRHIPYQANRCLEVVSKMFGYAEMWGLRPDGTNPRKHIRKYPEEKRERFLSAAE 206

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                E +++ ++   E +   LA   L+ +G R ++       H+     +++   + T
Sbjct: 207 LRRIGEVLREMETEGIELTSAILAARLLILTGCRLNEIMTLQWDHVDLEGRALRLPDSKT 266

Query: 232 IITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHG 288
              +       ++LL   P  K   ++          +    +++    +AGV +   H 
Sbjct: 267 GAKIVHLGQPVVELLRDAPRIKGNPWVIPGTLPGKRLSDLQPFWQRVRARAGVKDVRIHD 326

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           +R   A+ +  AG     +    G         Y    A+ +++      
Sbjct: 327 LRHTFASTAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAVA 376


>gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 302

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 6   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 65

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 66  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 125

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 126 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 185

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 186 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 246 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 291


>gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876]
 gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2]
 gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185]
 gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N   + + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGKPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLIREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNEIIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi
           str. Ikeda]
 gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda]
          Length = 309

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 101/288 (35%), Gaps = 35/288 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKH 128
             + ++ ++     +++ NS ++++               +    +T   I S ++    
Sbjct: 2   DFLEQFLETVLAEKNVSANSLLAYKRDLQDFNDFLKSIQLQSSLAVTNNDIDSFIQHLLG 61

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + ++++R  + + + +  V  +   ++E P+  T+  +  + ++++    +
Sbjct: 62  KNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLIDY 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TII 233
             + +     +       L  +GLR S+     +  L+ +  + K +             
Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------KQKMNATQFSIWFKAKATKA 280
            V + D    +++     ++ F    +             +  M    F+I  K  A  A
Sbjct: 182 LVIMNDLTGDVISKYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKHAAINA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G+   N S H +R   A+   + GA    +    G   +   + YT  
Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHV 289


>gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134]
          Length = 327

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 98/320 (30%), Gaps = 29/320 (9%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRIS 94
             P  ++       A+           +   +   +       + +      L+ N+  +
Sbjct: 2   KRPAGASQTTRKPRAVHADAEMVALDAAIAPELDLVSRFCDALWLED----GLSRNTMDA 57

Query: 95  FESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVR 149
           +      + R            I    + +   +R      SS+ + L   R  ++WA+R
Sbjct: 58  YRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVFRRFYQWALR 117

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLR 205
           ++ +  +PC+ +   K+     +  ++  ++            G + R   E +  SGLR
Sbjct: 118 EQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTMLELMYASGLR 177

Query: 206 CSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT----------PIGKE 253
            S+  +     +  N    +    K      V         L                 +
Sbjct: 178 VSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARPALLAGRACD 237

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F+    + M    F    K  A  AG+    S H +R   AT   + GA    +    
Sbjct: 238 ALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLL 297

Query: 312 GWKTVDQAETYTKGADRIRL 331
           G   +   + YT  A R RL
Sbjct: 298 GHADISTTQIYTHVA-RERL 316


>gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 297

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 97/273 (35%), Gaps = 25/273 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRS---GVESRKHT 129
              Y +      LA +S  ++ +   ++     +      +++  H++     + +   +
Sbjct: 10  FKRYLQLE--RGLAPHSIEAYLNDISKLEVFCTNQQLTVNQLSVDHLQEFLVWLNTFNIS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P +  + ++ ++  F +   +  +  NP   ++ P+   +       E++ Q        
Sbjct: 68  PYTQSRLISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQLIGALDLS 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            ++G + +   E L   GLR S+     + +L  +  F     K      + +    +K 
Sbjct: 128 TTDGMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKY 187

Query: 245 LAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           L +               ++  F+N     ++     +  K  A K G+ K  S H  R 
Sbjct: 188 LNIYLNEIRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   + GA    +    G +++   E YT 
Sbjct: 248 SFASHLVEGGADLRAVQDMLGHESITTTEIYTH 280


>gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRS---GVESRK 127
           I+ + +       L+  + +++E     I+  +G+     + +     +RS         
Sbjct: 10  IARFLRYLKVERQLSPVTLLNYERQLTAIVGLAGEAGLKSWAQCDAAMVRSLAVRSRRAG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+       HL   +       K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLPIGRSAVA 189

Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +E F  ++         ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLNLRELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
 gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406]
          Length = 313

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 23/278 (8%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127
           L   +++       L+ NS  ++     ++I  + D      ++  +H+ + V S     
Sbjct: 20  LAEAFKRHLQLEQALSPNSISAYLMDLGKLIAYAEDCALPLDQVEYEHLETFVASLYDCG 79

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + +  ++  +++    +Y+  +P   +E PK +      ++ E++        
Sbjct: 80  IAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEEIDHILEAID 139

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              ++  + R   E L   GLR S+ C   +  +     F     K      V +    +
Sbjct: 140 YSKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKERLVPISPVAL 199

Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290
             LA              ++                     +A +  AG+ K+   H  R
Sbjct: 200 DALAQYLASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALSEAAGITKTVSPHTFR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AT   D GA    +    G + +   E YT    +
Sbjct: 260 HSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQ 297


>gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 298

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 87/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +                  +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCKHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_001A02]
          Length = 298

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 95/284 (33%), Gaps = 27/284 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128
            + +Y        +LA NS  S+E    Q  +           R +T  HIRS V    +
Sbjct: 4   FLQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSN 63

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +A    + ++S+R    +   + ++  NP   ++ PK   +     T +++ +    
Sbjct: 64  RGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGI 123

Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KT 229
             E      +    FE +   GLR ++ C      +  +   I+ Q              
Sbjct: 124 IPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPI 183

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                    +     LA         F++ + +K+      +  K     A V K  S H
Sbjct: 184 ARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT   D+  L
Sbjct: 244 TLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTH-LDKEHL 286


>gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 379

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 104/347 (29%), Gaps = 24/347 (6%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKRE-----YIN 62
               +G   Y   +R     R R     ++    +F  A   A+   +   +        
Sbjct: 29  RVKPNGTKSYLVQYRNRTTGRSRRQTIGQAGPLLSFANARKEAMRLLSEAAQGGDPVESK 88

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
              +K  T+  L  +Y            S  +  S  +  II K G     ++  + I++
Sbjct: 89  QSARKAETIADLADQYLTLHAKPKKREKSVANDVSMLNGIIIPKLGKQKVAQVGHRDIQA 148

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              S + TP  A + L  +  +F  +VR  +   NP   VER   +    R  + E++ +
Sbjct: 149 LHNSLRETPYRANRTLALLSKMFALSVRWGWRQDNPAKGVERFPEEK-RYRWLSDEELAR 207

Query: 182 FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
           F +  +E    R A      L +G R  +   +                  T        
Sbjct: 208 FVAELNEHPNQRAANAIRLQLLTGARIGEVLTSKWSDFDLVRGVWVKPSHHTKQKRTEHL 267

Query: 239 ------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                    ++ +  +      +            +   +++   T A + +   H  R 
Sbjct: 268 PLSNTAISLLQTIQESADLNHPYVFPGRNPGQPLKELKRFWQNVTTAAELSDYRIHDNRH 327

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             A+     G T   +    G       + Y   AD  +R   +   
Sbjct: 328 THASHLVSNGLTLPVVGRLLGHTNPLTTQRYAHLADDPLRAAAEIMA 374


>gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970]
 gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 291

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+  S+    ++I R+               + + V +     
Sbjct: 5   LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGKTLADAEETDLAAAVYADGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W   +   A NP   ++ PK         T++ + +         
Sbjct: 65  SSQARALSACKRLYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAPDTET 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++      ++  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 GRYYTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T     G     +    G   ++  + YT  A+  
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVR 279


>gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1]
 gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1]
          Length = 298

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 28/289 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGV 123
             TL+     + +      L+ N+ +++    +++IR   +         I    ++  +
Sbjct: 4   THTLRD-FQHFLRIE--RGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFI 60

Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     S  + ++ ++  F + V ++Y   NP   +E PK   +       +D+++
Sbjct: 61  YEIAKVLNARSQTRIISGLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLALKDIEK 120

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             +      +EG + +   E L   GLR S+     +  L  +   I+          V 
Sbjct: 121 LIAAIDLSKNEGHRNKAIIETLYGCGLRVSELVNLKISDLFFDEGFIRVTGKGDKQRFVP 180

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK- 284
           +     K + +   G+        +            ++         K    K+G+ K 
Sbjct: 181 ISSITKKYINLYIQGQRQHVPYIPEFGDTVFLNRRGKQLTRVMIFTIVKRLTEKSGLKKN 240

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            S H  R   AT   + GA    +    G +++   E Y    DR  L 
Sbjct: 241 ISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMH-VDRSHLA 288


>gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
 gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231]
          Length = 313

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 82/267 (30%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ ++  ++ S      R       G     +       +        P +  + L++
Sbjct: 35  RGLSAHTLSAYRSDLVAYARWLERHGTGLLRAGRDGPTAYLAERVRSGVRPRTTARLLST 94

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           +R  ++  +R   +A +P   ++ PK         +++++++           G + R  
Sbjct: 95  LRCFYRLQLRDGRLAEDPTAQLDSPKLDRPLPATLSEQEVEELLAAPDCQNPIGLRDRTM 154

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
            E    +GLR S+     +  L       +          V L D     L         
Sbjct: 155 LEVAYATGLRVSELVSLRLGQLNLRQGMARIIGKADKERLVPLGDEAQAWLEDYLQDARS 214

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                      FI    + M    F    K  A  AG+    S H +R   AT   + GA
Sbjct: 215 VLLTHPSASVLFITRRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSFATHLLNHGA 274

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT  A + 
Sbjct: 275 DLRVVQLLLGHSDLTTTQIYTHVARQR 301


>gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
 gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM]
          Length = 305

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 88/289 (30%), Gaps = 30/289 (10%)

Query: 72  KWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +   S      + N+  ++     + +           G     +I+   +RS 
Sbjct: 7   RDALQGWLDMSRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSW 66

Query: 123 VESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   +      P S  + L++++   +W   +E       LS+  PK   +  RP + E 
Sbjct: 67  MAQMRSGGEVGPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEH 126

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +       Q  S    GS+       L   GLR S++     + L          K G 
Sbjct: 127 ARDVIETAGQQSSAPWIGSRDMAVITLLYGCGLRISEALSLTGESLPLGEMLRIRGKGGK 186

Query: 232 II-------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                           + KL           F       ++        +    + G+  
Sbjct: 187 ERLVPVIGAARAAVAEYAKLCPYPLDEGAPLFRGARGGPLSPRIVQKVVQQVRMQLGLPA 246

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + H +R   AT   +AG     +    G  ++   + YT   D  RL
Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYT-AVDTARL 294


>gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
 gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14]
          Length = 296

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
            + +  +  S+     Q          D      K  R+ +          ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLSFLYSHNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M+       + S    + R+ 
Sbjct: 76  LRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVKQDSKKGIRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 136 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
              N+ +          +              + AGV +   H +R   AT   + GA  
Sbjct: 196 RKTNDHEYLIVNMNGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4]
 gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4]
 gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1]
          Length = 321

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 22/287 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---E 124
           L  ++  + +       LA N+  ++ +   ++     +      ++  + +   V    
Sbjct: 24  LAPVMDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLR 83

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     +  + L ++R  F +AV +  +  +P L +E PK         T+++M    +
Sbjct: 84  RRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILA 143

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   G + R   E +  +GLR S+ C             ++    G    +     
Sbjct: 144 RPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHH 203

Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK--SAHGV 289
               L    +       +  +  M         +        K    +AG++K  S H  
Sbjct: 204 VSCALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTF 263

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
           R   AT   + GA    +    G   +   E YT   ADR+R     
Sbjct: 264 RHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNA 310


>gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae]
          Length = 311

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 97/299 (32%), Gaps = 37/299 (12%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124
            ++  +  ++         ++ N+  ++    ++  R     G  D   I+ + I   V+
Sbjct: 2   GSISNIARQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQGITDIENISAQDIERYVQ 61

Query: 125 SRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   S          SA + L   R L ++A+ +  V  +    V  P          
Sbjct: 62  ELRKGDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAMGRHLPDTL 121

Query: 175 TKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS 223
           + E++ +             E  +     EFL  +G R S++    V  +    +N    
Sbjct: 122 SVEEVNRLIEAIPIDDAASPENLRDCALLEFLYATGARISEAVGLVVDDVAAIVENEGIV 181

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFK 274
             T K      V + D  +  L    +                     +++        K
Sbjct: 182 RITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSRQSAWQILK 241

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
             A +AG+ K  S H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 242 NSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLR 300


>gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 294

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 7/271 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y  S  + +L+ + + +     D +  ++G + + ++  +H+   +  +   P++A 
Sbjct: 2   IEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEKLMTKKA-GPTAAN 60

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               +M +L+ +A ++  Y   NP    E+ K   +G   W +E++++F      G++  
Sbjct: 61  TVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKAH 120

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248
           L     L +G+   D  R G QH++    + +  KT     + +       L       +
Sbjct: 121 LVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANWS 180

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                    +             WF+ +  +A V  + HG+RK  AT  ADAGAT  E+ 
Sbjct: 181 DGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEIA 240

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    K    A  Y K A+R RL      ++
Sbjct: 241 SYLAHKDTKTAAIYVKKANRARLADSGFAKL 271


>gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
 gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313]
          Length = 308

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125
           K L  +Y +       ++ ++ ++E    + +                IT+  +R  +  
Sbjct: 10  KQLFLDYLRIE--RQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSE 67

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKE 177
                    +  + ++S+R  +++ +  E VA NP + +   K      R       TK 
Sbjct: 68  LYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKM 127

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                    + G +  L  E L  +G R S+     +Q++ ++   +           V 
Sbjct: 128 FDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVP 187

Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                   LA                     F+N     +         K    K+G+  
Sbjct: 188 FGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQ 247

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AH  R   AT   +  A    +    G  ++   + YT  
Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHV 290


>gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
 gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595]
          Length = 310

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 30/285 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHI 119
               + +Y        SL+ N+  ++                  +            +++
Sbjct: 7   FDRALRDYVAHLGIERSLSDNTLGAYRRDLTHYKEHLELRSVASLAAISPEDAASFVEYL 66

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R G        SS  + +T++R   ++ + +     +    +  PK      +  T  +M
Sbjct: 67  RDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLPKAITIPEM 126

Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           +Q  +  + G     ++ R   E L  +G R S+     V  +     +I+   K     
Sbjct: 127 EQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENATIRLFGKGRKER 186

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAG 281
            + L    ++ +        T  +       +                    +A A +AG
Sbjct: 187 ILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSAWGVIQAVAEEAG 246

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           + + S H  R   AT     GA    +    G  +V   + YTK 
Sbjct: 247 LTDISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKV 291


>gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1]
 gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1]
          Length = 298

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 89/283 (31%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHI--------RS 121
           LI  +        + ++++  +++      +       +    K+    I         +
Sbjct: 4   LIDNFVNYLKVQKNFSIHTIEAYQKDLFDGLDYFSIVLNKPIEKMDHASINSSLVREFLA 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +  + ++  + L S R  FK+   +     NP L V  PKR+    +   +E+ +Q
Sbjct: 64  YLRQKNLSRATVARKLASWRAFFKFLYNERLAYTNPMLRVANPKREKRLPKFLYQEETKQ 123

Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                     G + R   E L  +G+R S+     + ++      I+          V  
Sbjct: 124 LVEAPDHSPLGIRDRALLELLYATGIRVSELVALDLSNIDLARGYIRVMGKGSKERVVPF 183

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAG--VNKSA 286
               +  +           +  D           +++             + G  +N S 
Sbjct: 184 HQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRLSDRGIRKIVDKYCQRLGMKLNVSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   D GA    +    G  ++   + YT    + 
Sbjct: 244 HTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKK 286


>gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
 gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1]
          Length = 300

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 97/284 (34%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126
            L  EY +     + +  + + ++   +Q        G  D  ++T   +R  +      
Sbjct: 9   QLFIEYLQIE--KNYSQYTIVCYQRDIEQFFEFMNEQGIHDLAEVTYSDVRLYLTKLYEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K +  S  + ++S+R  +K+ +R++ V  NP      PK++ +      +++++      
Sbjct: 67  KQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQELEILFHVN 126

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
              +    + +   E L  +G+R S+ C   +  +  +  +I    K      V      
Sbjct: 127 DVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQRYVPFGRFA 186

Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L                      F+N     +              KA +  + S H
Sbjct: 187 KEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAALTQHVSPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 247 VLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
 gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGV 123
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R   + +
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMKREGISSFLDVTYADVRLYLTML 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
              K    S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum
           DSM 273]
 gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum
           DSM 273]
          Length = 341

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 93/315 (29%), Gaps = 49/315 (15%)

Query: 65  RKKPTTLKW-LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116
           +  P TL   LI E+  S     +L+  + +++ +   Q           G+FD   +T 
Sbjct: 17  KDNPATLSERLIEEFLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76

Query: 117 KHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +R  +           S  + L S++  F++     ++  +   +V  P+        
Sbjct: 77  SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSRPIPSF 136

Query: 174 WTKED-------------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            T+ +                     +         +     E L   GLR S+      
Sbjct: 137 LTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISELTGLRQ 196

Query: 215 QHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--------------- 258
             L+     +K T K      V L    +  L      +  FF                 
Sbjct: 197 SDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESDFVFLT 256

Query: 259 NDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N  +++         +           K+ H +R   AT   + GA    +    G   +
Sbjct: 257 NKGKQIYPMLVQRMTRRYLAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVSEMLGHSNL 316

Query: 317 DQAETYTKGA-DRIR 330
              E YT    +R+R
Sbjct: 317 STTEIYTHVTFERLR 331


>gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21]
 gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21]
          Length = 331

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 75/274 (27%), Gaps = 21/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRK---ITTKHIRSGVESR 126
              +I +Y       + + N+  ++ S      +    + D      +     R     +
Sbjct: 41  FPEMIEDYLIELEIRNYSKNTIKTYRSIIINFHKFLKSEKDLYDERLVLRAFKRYIRYLK 100

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
           +    S          ++  F++        +      +   +        +  +     
Sbjct: 101 REKNVSQNYIYLVTVVVKKFFEFGGIGVLKDVQTPKRTKSLPKSLNENEILSLINAMDHD 160

Query: 183 ------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                 ++      + ++    L  SGLR S+              +I+ +        V
Sbjct: 161 KDDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRTIRIRGKGEKDRIV 220

Query: 236 ELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
              +   +     L +     +  F+N     +      +  K  A  AG+ K  + H +
Sbjct: 221 LFDEQTKELLEGYLQVRGDHSDYLFVNRSGNHLTPRYIQMMIKDYAKAAGIKKKVTPHIL 280

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT     G     +    G   +   + YT
Sbjct: 281 RHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 314


>gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302]
 gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302]
          Length = 307

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127
           ++  Y +      + + N+  ++      ++        +   +  + ++    +     
Sbjct: 11  VLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEVTALQLEDLQHFAATLHEFQ 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ +R  +++ +   Y+  +P   +E P          +  ++   +    
Sbjct: 71  IGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSID 130

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
               EG +     E L   GLR S+     +  L  +   I+   K      V +    +
Sbjct: 131 LSKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKERLVPISPRAI 190

Query: 243 KLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           K L +    +    I          N     +  T   I  K +A +AG+ K+   H +R
Sbjct: 191 KELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT     GA    + A  G +++   E YT 
Sbjct: 251 HSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284


>gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
 gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 20/279 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +  + P TL+  +  Y  +    + +  +  ++     ++   +G      + + HIR  
Sbjct: 3   AAEQVPATLQGYL-AYLNNE--RNYSPLTAENYARDIRRLFELAGATPLPDLKSHHIRRY 59

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +     +     S  + L++ R  + + +R      NPC+ +  PK         + ++ 
Sbjct: 60  IAQLHGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPDEA 119

Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITV 235
            +           ++ +  FE L  SGLR ++            +     T K      V
Sbjct: 120 VKLVEMLVATPLDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTRIV 179

Query: 236 ELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            L    +  L      ++          F+  +  +++     +  + +    G+     
Sbjct: 180 PLGSHAIDALKAWLAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQGIASGVH 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT    +      +    G  ++   + YT 
Sbjct: 240 PHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 278


>gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
 gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1]
          Length = 294

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 23/274 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP- 130
           I  +         L+ N+  S+        +         R      +   +   K    
Sbjct: 5   IRTFLDHLRLERGLSENTATSYARDLADFSQYLACEQRTMRDADRTVVLRYLSDLKRRGM 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++  + ++++R  F++ +R+  +  +P  ++E         R  ++ED+++       
Sbjct: 65  KSTTIARRMSALRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRR 124

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E L  +G+R S+     ++ ++     I+          V L +    
Sbjct: 125 PDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQD 184

Query: 244 LLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            L +                  F+N   ++M    F    K  A +AGV    + H +R 
Sbjct: 185 ALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G   +   E YT  
Sbjct: 245 SFATHLLEGGADLRVVQELLGHADISTTERYTHV 278


>gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
 gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 98/275 (35%), Gaps = 27/275 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIR---SGVESRK 127
              Y K     SL+ NS  ++ +  D++++            K+ T+ +R     +    
Sbjct: 10  FESYLKLE--RSLSPNSVNAYVNDVDKLVQFLSVQSNPKSLLKVNTQDLRNFIKWINEFG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
              S+  + ++ ++  +K+ + ++ +  +P   +E PK + +     T  ++        
Sbjct: 68  LIASTQSRIISGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINTMLDGFD 127

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               E  + +   E L  SGLR S+     +  L   +  +K    G             
Sbjct: 128 LSKPENIRNKAMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNKERLVPVGSSAL 187

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                  +     L +    ++  F+N    K++     +  K  AT  G+ K  S H  
Sbjct: 188 KHLEIYLENIRNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLATAVGIKKNISPHTF 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 248 RHSFATHLIEGGADLRAIQEMLGHESITTTEIYTH 282


>gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 332

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 95/317 (29%), Gaps = 27/317 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L       +  +       T K  +  + ++    ++  +++  +       +R  G+  
Sbjct: 18  LENVLKILKQYSKVSNSSITFKEFVDYWFEAYASTAVKPSTQKRYRQLLKPALRAIGNKP 77

Query: 111 YRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             K+    I++   +   T S  + ++    +  +FK A   EY++ NP   V  P  + 
Sbjct: 78  LNKVKPLDIQNIYIALAGTQSNCTILKLHRLLHEIFKHAQMWEYISDNPVKKVVPPTPEK 137

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +    W  E  ++F     +      A    L++G+R  +        +      I   K
Sbjct: 138 KVFDVWDVETAKRFLEIIKDEPIYYPA-LIALHTGMRAGEILSLKWCDVNFETRVISIVK 196

Query: 229 TGTI---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQ 268
           +                    V + D   K L       +    +    ++         
Sbjct: 197 SERKNRGLKTVNLKTKTSKRAVYMNDILYKELKNLYEITKPKPDDFVCPRLPTGNLTVNY 256

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
            S  FK    K        H +R   AT+    G     +    G   +   A+TY+   
Sbjct: 257 LSRKFKKLVKKHNFPLIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVL 316

Query: 327 DRIRLGIKNSRRISSVV 343
               +  +  +    + 
Sbjct: 317 PT--MQEEAMKEFVKLW 331


>gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980]
 gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980]
          Length = 301

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ 
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                        + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
 gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180]
          Length = 297

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 95/294 (32%), Gaps = 25/294 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI--RSGVE 124
           + LI  +  +      L+ N+  +++S             G           +   + + 
Sbjct: 4   RALIEGFADALWMERGLSRNTLTAYQSDLRAFAHWLSQERGRTLIAAERADLLDYLARLA 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P S+ + L+ +R  ++   R+  +  +P   VE PK      +  ++ D++   +
Sbjct: 64  KQGRNPRSSARLLSCLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADVEALLN 123

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                   G + R   E L  SGLR S+        +      ++   K G    V L +
Sbjct: 124 APDTEDARGHRDRTMLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKERLVPLGE 183

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                L     G              F       M    F    K  A  AGV    S H
Sbjct: 184 DACNWLRDYVRGPRFDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVAKPLSPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +R   AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 244 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RERLKQLHARHHPR 296


>gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
 gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens
           NRL30031/H210]
          Length = 292

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125
            ++  LI +  +S      L+ N+  S+     ++  +   G  D+       +   V +
Sbjct: 1   MSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYA 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    + 
Sbjct: 61  EGEKSTSQARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAA 120

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230
                  G + +   E +  +GLR +++ +  +  +  +  SI+T               
Sbjct: 121 PDVETPHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 180

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
               VE      + L +     +  F++  +  ++     +  K  A  AG+ + S HG+
Sbjct: 181 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   AT   + G     +    G   ++  + YT  A+
Sbjct: 241 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278


>gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 28/289 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS 121
            TL+  ++++        + +  +  S+     Q +         G       TT+ +RS
Sbjct: 1   MTLEQGLADFLTHLGLEKNSSDKTVKSYREDLTQALGFVRDRTKKGHVAVGDWTTRTVRS 60

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V          S+  + L ++R   K+  R   + +NP L++  PK+  +     T  D
Sbjct: 61  FVSWLHEQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLPHFLTLAD 120

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           +Q+  +        G + R   E L  SG+R S+     +  +  N   I  +  G    
Sbjct: 121 VQKLLTAPPATDWAGRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKER 180

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                           +    LLA T    E  F+NN   ++               AG+
Sbjct: 181 LALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGL 240

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +   S H +R   AT   DAGA    +    G K++   + YT    + 
Sbjct: 241 DPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQR 289


>gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842]
 gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407]
 gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200]
 gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 97/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E++++  
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                G+    + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168]
 gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168]
          Length = 298

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRK 127
           +  + +       L+  +  +++   D I     ++G   +++     +RS       + 
Sbjct: 8   VDRFLRYLGVERQLSPITLKNYQRQLDAIIALAAEAGLESWQQCDAAMVRSFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R  F W V +  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGPASLALRLSALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     + HL  +        K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F    +        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRGLFGCEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057]
 gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057]
          Length = 372

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 108/363 (29%), Gaps = 54/363 (14%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------T 42
            P ++L P V     R+G+       G+   IRL    E                     
Sbjct: 7   KPKIKLSPVV-----RNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAEDFVLAE 61

Query: 43  FIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           F   Y+        A+  + P++E    P             Y +       + ++   +
Sbjct: 62  FFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVY 113

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
            SYF    +         +T   I       +  +  +     Q + +++    +   + 
Sbjct: 114 TSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIK----FYYEKV 169

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                 C  V R KR+       +KE++++         +    F  L  +GLR S+   
Sbjct: 170 LGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMFSILYSAGLRISELLE 229

Query: 212 AGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNA 266
                +  +     ++  K        L    MK L       +      + +       
Sbjct: 230 LKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTE 289

Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  S   KA A +AG+ K    H +R   AT   + G     +    G   +   E Y  
Sbjct: 290 SIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVH 349

Query: 325 GAD 327
            AD
Sbjct: 350 IAD 352


>gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
 gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC
 gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5]
          Length = 304

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 91/283 (32%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
              L  EY +     + +  + +++    ++           G  +     T+   +   
Sbjct: 7   FVKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQGINGFEEAAYQDTRIFLTEAY 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ +  NP   V  PK++    +   +++     +
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + +   E L  +G+R S+ C   +  +   + ++    K      +    
Sbjct: 125 VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285
              + L +         +   K+               A            KA   ++  
Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASSTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287


>gi|307692277|ref|ZP_07634514.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 385

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 117/383 (30%), Gaps = 41/383 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKRE 59
           M         + ++R   G+       GH      +     +      +  L  +  +  
Sbjct: 1   MAKRRPSGDGMVRKRE-DGRWEGRIVIGHKADGTPIFRYVSAKTQKELLKKLHQNIEEYR 59

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
            +N        L   +  + +     S+  ++   +  Y ++ +    GD    KIT + 
Sbjct: 60  DVNLNEGSRMPLSQWLDRWLEEYAAPSVRPSTLDGYRRYIERNLKPYLGDKPVGKITRED 119

Query: 119 IRSGVESRKH--------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++      +               + SS  +    +      AVR+  +A NP   +  P
Sbjct: 120 VQKLYRELQRNGRQEYHPEYGHKLSGSSIRRIHGVLHQAMDAAVRENLIARNPTEGITLP 179

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K+KT   +      +++F     +       F   L +GLR  + C            ++
Sbjct: 180 KKKTTPKQILNDAQLERFMDVIQKDEVWHEFFYTELTTGLRRGEICGLMWSDFDAAHGTL 239

Query: 225 KTQKTGT-----------------IITVELPDGFMKLLAMTPIGKETFFINNDK----QK 263
             ++T                     T+ LP   ++LLA       + +I  +     Q 
Sbjct: 240 TVRRTMHVQKGGGLAAGETKTGAGKRTITLPPSTVELLAQRKKQSYSQWIFPNPLRPEQP 299

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
           +N        K    +AG+     H +R   AT +  +G  A  L    G        +T
Sbjct: 300 VNPNAAYDHLKKLLQQAGLPSIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFTLDT 359

Query: 322 YTKGA-DRIRLGIKNSRRISSVV 343
           YT    D  +   +        +
Sbjct: 360 YTHVTGDMQKRASEIVGGFMEHI 382


>gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
 gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271]
          Length = 299

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L              T       F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
 gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43]
          Length = 313

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDF--DYRKITTKHIRSGVESRKH 128
           +  + +        A+N+  ++    D    +++  G         T + + S + +R  
Sbjct: 9   VEAFLEMMSAERGAALNTLEAYRRDLDDASSVVKALGSTLDRANADTIRTVISDLAARGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P+S  + L+++R  +K+   +     +P   VE P+++    +  + +D+ +  +    
Sbjct: 69  SPASQARRLSALRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILSVDDVSRLLAQAEA 128

Query: 189 GS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234
                          + R   E L  +G+R S+      + L  +    I   K      
Sbjct: 129 DISKARDESETTQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRFLIIRGKGAKERM 188

Query: 235 VELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           V +       L                 F  N+    ++   F+   K  A +AG+    
Sbjct: 189 VPMSRPARLALEAWMAEIGEVAEETGFLFPANSSDGHLSRQVFARELKDVAARAGLPSAK 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 249 VSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294


>gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 313

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 99/290 (34%), Gaps = 23/290 (7%)

Query: 64  PRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRS 121
           P  + + ++ L+  Y +      +L+  +  ++    D+  R   D     +++   +R 
Sbjct: 2   PETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFVEDEGCGLELSPSLVRR 61

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            V   K   +P+S  + L+S+R  +++AV+Q     NP  SV    R+       ++ + 
Sbjct: 62  FVAELKDALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRLPEVLSEVEA 121

Query: 180 QQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
            +          G + +L  E L  +G R S++    +  +     ++K   K       
Sbjct: 122 SELLSFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKKRTVKLLGKGDRQRIA 181

Query: 236 ELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKA--G 281
            L    M  LA     +               F+N   +++         +    +   G
Sbjct: 182 YLGPQAMSALAAYLPYRRERVASDKKDAVQALFLNAHGERLTRRGAGFILRKHQERLASG 241

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                H  R   AT   D GA    +    G   +     YT      RL
Sbjct: 242 KRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTH-VSLKRL 290


>gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15]
 gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15]
          Length = 301

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + +++MQ 
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYEDEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                        + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 359

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PT 69
           +   + ++G   Y F+   G++       E +       A       +E I++P  K   
Sbjct: 3   IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAM 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L  E+               +  ++   ++   G       T   +++        
Sbjct: 63  TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184
              A +    +R +F  A    Y+  NP        +++   + +      +        
Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237
             +   +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                        +  L  T       F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 303

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+      ++    + G   ++ +    +RS V   K   
Sbjct: 12  VEAFLRYLKVERQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   V  P+      +    +++ +      
Sbjct: 72  LHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVAKLLDIDL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+   +       K      V +    +K
Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVK 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F+ N  ++++A      F     K GV  +   H +R   A
Sbjct: 192 WLDHWLELRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
 gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA]
          Length = 316

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SLA N+  ++ +   +++      + +   +T   ++          
Sbjct: 16  IIRKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F +    +Y+  +P   +E PK   +     T E++ +      
Sbjct: 76  IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+ C   +  L     F     K      V +    +
Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +                ++  F+      ++        K  A K G+ K  S H  R
Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
 gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553]
          Length = 332

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 51/314 (16%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------------- 108
           +   I   + +      L+ N+  ++        R   D                     
Sbjct: 19  IDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPQAYAREMADRHGDAAGEHAL 74

Query: 109 -----FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                          I +    R      ++A + L ++R  F WA+R+     +PCL++
Sbjct: 75  PVGPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAWALREHRSQRDPCLTL 134

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              K+     +  +++ +             G + R   E L  +GLR S+        +
Sbjct: 135 VAAKQPPRLPKTLSEQQVDALLRAPDATQPRGLRDRAMLETLYATGLRVSELVGVRALDV 194

Query: 218 QNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMN 265
             N   ++    K G    V L       + +                  FI    + M+
Sbjct: 195 SLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGRQSDALFITGRAEAMS 254

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F    K  A  A +    S H +R   AT   + GA    +    G   +   + YT
Sbjct: 255 RQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYT 314

Query: 324 KGADRIRLGIKNSR 337
             A      +  + 
Sbjct: 315 HVARERLKALHAAH 328


>gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis
           URRWXCal2]
 gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD
 gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 35/287 (12%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH- 128
             IS++ +      +L+ NS +S++                +  ITT+++R  +E     
Sbjct: 2   EFISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITTENVRDWIEYLASN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  +++ + + + A NP L+V+ PK + +     + + ++    + 
Sbjct: 62  DLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYC 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTII 233
                 EG +       L  SGLR S+     +  +        +         K     
Sbjct: 122 SQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGKGNKER 181

Query: 234 TVELPDG----FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA 280
            + + +       K LA+  +        N             M    F+I  K+ A  A
Sbjct: 182 VIVINEQAVISIAKYLAIRDVFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   + S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 242 NLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTH 288


>gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
 gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f]
          Length = 293

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G FD  ++  + IR  + S   
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
              +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289
            ++ L +  I             FFI  + +++         K   +K      KS H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22]
 gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22]
 gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a]
 gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b]
 gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22]
          Length = 293

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G F+  ++  + IR  + S   
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            ++ L +  I             FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 294

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 22/283 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKH 128
           +  + +       LA N+  ++ +   ++     +      ++  + +   V     R  
Sbjct: 1   MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              +  + L ++R  F +AV +  +  +P L +E PK         T+++M    +    
Sbjct: 61  AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 120

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               G + R   E +  +GLR S+ C             ++    G    +         
Sbjct: 121 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 180

Query: 245 LAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           L    +       +  +  M         +        K    +AG++K  S H  R   
Sbjct: 181 LVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSF 240

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
           AT   + GA    +    G   +   E YT   ADR+R     
Sbjct: 241 ATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNA 283


>gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
 gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2]
          Length = 329

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 103/313 (32%), Gaps = 44/313 (14%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG------------DFDYRKITTK 117
           L+  I  + +        + +++ ++    +Q                  DF   +I +K
Sbjct: 23  LEEGIKRFIRYLHDEKGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEEIESK 82

Query: 118 HIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            IR  V S   K   ++  + L+++R  F +  ++E +  NP   ++ PK +        
Sbjct: 83  TIRKFVGSLYGKLKRTTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYIPSHLP 142

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG 230
            +++ +     +     G +     E L   G+R ++     V  + ++      T K  
Sbjct: 143 VDEVFRLMDLPNRERSLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQRLVKVTGKGN 202

Query: 231 TIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
               V +    +K +                    E   +N    ++         K  A
Sbjct: 203 KERLVPIGRQALKAVKAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTRSIGRIVKKYA 262

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              G+  + S H +R   AT   D GA    +    G K++   + YT  +         
Sbjct: 263 GAGGLTEDISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVS--------- 313

Query: 336 SRRISSVVDSDDP 348
             R+  V D   P
Sbjct: 314 LDRLMEVYDKTHP 326


>gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 294

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 89/260 (34%), Gaps = 22/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              + N+ IS++    ++     +       D +++  +   S +E  K   SS  + + 
Sbjct: 16  KKTSANTEISYQRDLKKMAEFLKERGIRNYKDVKELELEGYISYMEREKFASSSISRSVA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           SMR  F++  ++  +A +P  +++ PK +       T E++ +        +    +   
Sbjct: 76  SMRAFFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTPKGIRDSA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L  +G+R S+     +  +      +   + G    + +     K +        T
Sbjct: 136 MLELLYATGMRVSEMLHLQIFDVNLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTART 195

Query: 255 FF----------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            F           N   + M+   F    K  A  AG+ +    H +R   A      GA
Sbjct: 196 VFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQNGA 255

Query: 303 TAHELMATYGWKTVDQAETY 322
               +    G   +   + Y
Sbjct: 256 DIRSVQEMLGHSDISTTQVY 275


>gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
 gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110]
          Length = 303

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 30/286 (10%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125
           +   I   + +      L+ N+  ++        +  G               +++ + +
Sbjct: 12  IDDFIDALWLED----GLSKNTLAAYRRDLALFAQWLGSQRSGRALDTAQESDLQAYMGA 67

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R   +   +SA + LT  +  ++WA+R+  +A +P + +   ++    I+  +++ +   
Sbjct: 68  RLSTRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLAPARQMPRAIKTLSEKQVDDL 127

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237
            +        G + R   E +  SGLR S+      +    N+       K      V  
Sbjct: 128 LAAPDVETPLGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLRVLGKGSKERLVPF 187

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV--NKS 285
                + +           ++  +            M    F I  K +A  AG+    S
Sbjct: 188 GGEARRWIERYLDESRPTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLS 247

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H +R   AT   + G     +    G   +     YT  A R RL
Sbjct: 248 PHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVA-RERL 292


>gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus
           WK1]
 gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC
 gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1]
          Length = 300

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 27/277 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRK 127
           L  EY +     + +  +   ++    +          +++        +   + +  RK
Sbjct: 10  LFIEYLQIE--KNYSEYTIACYKHDIGEFFEFMEREQIKQLQQVSYSDVRLFLTELHQRK 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + ++S+R  +K+ +R++ V+ NP      PK++ +       ++++Q      
Sbjct: 68  QSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVVND 127

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
             +    + +   E L  +G+R S+ C   + H+  ++ +I  + K      V       
Sbjct: 128 LNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQRYVPFGTYAK 187

Query: 243 KLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKA--GVNKSAHG 288
           + L            +  K                             +A   +  S H 
Sbjct: 188 EALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAALSLKVSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   AT   + GA    +    G   +   + YT  
Sbjct: 248 FRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHV 284


>gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
 gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica
           HKI 454]
          Length = 312

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           I+ Y  S      L+ ++   +    D + + +G  +  ++T   +R  V        +P
Sbjct: 8   IARYLDSLAHERRLSAHTLRGYAHELDMLRQLAGTRELTQLTPVDVRGAVSRAHSGGLSP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L+  R  ++W    + + +NP   V  PKR     +  + +D           +
Sbjct: 68  RSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEASCIET 127

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               + R   E     GLR ++     +  +    +                   G   T
Sbjct: 128 PDALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADVTVLGKGGKRRT 187

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+A       +  A  AGV    
Sbjct: 188 VPIGSKALDALHRWLAVRDQLLKHDPHPLFLSARGMRMSAGVVRERVRRAALAAGVPSHV 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 248 HPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 294


>gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
 gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41]
          Length = 277

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 94/267 (35%), Gaps = 11/267 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
            ++  +         +  +  S++    Q   +  + +Y ++  K IR+ + +       
Sbjct: 4   EVLQAFYDDN-CNQFSSETIRSYKISLSQFFSE-SEKNYDEVRAKDIRNWLATLSEKGLK 61

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S    LT+++  +++ + +  +  NP   V+ PK +        K  +   +    + 
Sbjct: 62  IRSIQLKLTALKSFYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALLQELTKDN 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF----MK 243
            + R   E L  +G+R ++     ++ ++       I+  K      V            
Sbjct: 122 LRERAIVEVLYATGVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALRLKN 181

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            L +     +  F +   + ++     ++F+  + + G   + H +R   A   A+ G  
Sbjct: 182 YLHVRYENSDFLFSSPRGKHISCDLVQLFFRKYSKELGFKVTPHTLRHTFAAHLAEKGME 241

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
              +    G   ++    YT+  +  R
Sbjct: 242 FIYIQDLLGHANINSTRIYTRLMNHAR 268


>gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2]
 gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 300

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 94/287 (32%), Gaps = 30/287 (10%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGV 123
           ++   I   + +      L+ N+  ++                            +++  
Sbjct: 8   SIDAFIDALWLED----GLSRNTLAAYRRDLSLYAGWLHAKEQQHRKLDDTDEDDLKAYF 63

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             R      +SA + LT  +  F+WA+R+  +A +P L ++  K+     +  ++  +  
Sbjct: 64  SFRHAATKATSANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQVDA 123

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             +   + +    + R   E +  SGLR S+       H+  N  +++          V 
Sbjct: 124 LLAAPDDDTPLGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAERLVP 183

Query: 237 LPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 + +                 +  F+      M+   F +  K  A  AG+    
Sbjct: 184 FGQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGIHSPL 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 289


>gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 388

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 107/368 (29%), Gaps = 31/368 (8%)

Query: 2   TPSLRLPPFVTKERTRHG-----KIIYYFRKGHGRRIRLPYPH------ESTFIPAYMSA 50
               + P    +E  R G     K+ Y   K +G+ I                     S 
Sbjct: 14  RNKTKYPGVFFREEKRIGASGSEKVYYVVFKKNGKVIEEKVGRQFIDDMTPAKASRIRSE 73

Query: 51  LTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           L     K + +        +L+  I   + + A       N+ I    Y   +    G  
Sbjct: 74  LIEGKRKTKKLAKEEALAASLRKNIHGIWEEYAKGRPKNKNTDIDLCRYELHLKNIFGHK 133

Query: 110 DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERP 164
              +ITT  +R   ++      +P + +  L  +R + ++  +     +     L  E P
Sbjct: 134 FPEEITTNDVRIFKDNLIQSGKSPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFEMP 193

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF 222
           K         T+  ++         +   +A    L   +G+R           L     
Sbjct: 194 KVDNIKTENLTETQLKALMEALDAETDQVMASCLRLALVTGMRKGALLALEWTDLDFEQG 253

Query: 223 SIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            I  Q               +   + +  +   + ++  + +    + F         KA
Sbjct: 254 IITLQGKSAKKGKTAYIPMSEAAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPNRIKQKA 313

Query: 281 GVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            +    +  HG+R   A+  A +G    + L       +    + Y        L  +  
Sbjct: 314 QLPADFRPFHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAH------LADEAM 367

Query: 337 RRISSVVD 344
           +R + V D
Sbjct: 368 KRAARVAD 375


>gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36]
 gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36]
 gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1]
 gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1]
 gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1]
 gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1]
          Length = 359

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PT 69
           +   + ++G   Y F+   G++       E +       A       +E I++P  K   
Sbjct: 3   IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAM 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L  E+               +  ++   ++   G       T   +++        
Sbjct: 63  TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184
              A +    +R +F  A    Y+  NP        +++   + +      +        
Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPAAPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237
             +   +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                        +  L  T       F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
 gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973]
          Length = 315

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 23/275 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126
            ++  Y +      + + N+  ++    ++++           ++  +H++         
Sbjct: 10  EMVKAYLRYLKLQRNYSGNTLEAYRRDLNRLLVYLKQEGLTPTEVKLEHLQHFSAQLYDC 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
                S  + L+ +R  +++     Y+  +P   +E P+  T      + E++ + ++  
Sbjct: 70  GIGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSL 129

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + R   E L   GLR ++     + +L  +   I+   K      V +    
Sbjct: 130 DLSKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFVPISPRA 189

Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +K L +    +             F+N     +  T   I  K +AT+AG+ K+   H +
Sbjct: 190 IKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKTISPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G +++   E YT 
Sbjct: 250 RHSFATALLEGGADLRAIQVMLGHESISTTEIYTH 284


>gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
 gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3]
          Length = 299

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVADTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L              T       F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 295

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 24/277 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR---SGVE 124
              + ++ +       LA  +  ++          +   G   + + T + ++   + +E
Sbjct: 2   DAAVEQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQFFLNHLE 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P S  + L+++R L+++ +RQ   + NP   ++ PK           E++ +  +
Sbjct: 62  EQGVGPRSRARKLSAVRQLYRFLLRQGTTSHNPLEWLDSPKLPKGLPTVLGLEEVDRLLA 121

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G +     E L  +G+R S+        L      +    K G    + +  
Sbjct: 122 APDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKERLIPMVM 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287
             ++ L +         +   K                 F    K  A + G+ K  S H
Sbjct: 182 RAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLPKDLSPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     GA    L    G   +   + YT 
Sbjct: 242 TLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTH 278


>gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019]
 gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019]
          Length = 298

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMGKGCKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis
           Et1/99]
 gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99]
          Length = 302

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 21/280 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVES 125
             +  + +       L+  ++I++      +   + +    D+ ++    +R   +    
Sbjct: 9   AAVEGFLRFLKVERQLSPLTQINYRRQLSALIVLLDELKVVDWARLDAALVRSLAARSTR 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S    L+++R    W + Q  +  NP   V  P+      +    +++ +    
Sbjct: 69  SGLKPASLALRLSALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDEVNRLLEI 128

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   + R   E +  +GLR S+     + HL   +       K      + +    
Sbjct: 129 DLNDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTA 188

Query: 242 MKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +  +      +E F   ++        ++++       F     K G+  +   H +R  
Sbjct: 189 VHWIENWLEMRELFDPEDNALFLSNKGKRISTRNVQKRFAEWGVKQGISSHIHPHKLRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   ++      +    G   +   + YT   D   L 
Sbjct: 249 FATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287


>gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286]
 gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286]
          Length = 359

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 24/338 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69
           +   + ++G   Y F+   G++       E +       A       +E I++P  K   
Sbjct: 3   IKAYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSSM 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K L  E+               +  ++   ++   G       T   +++        
Sbjct: 63  TFKELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEK 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184
              A +    +R +F  A    Y+  NP        +++   + +      +        
Sbjct: 123 LKFARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFYDTDELRDFMALV 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237
             +   +    F  L ++G+R  +      +  + +   I    + + +  E+       
Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242

Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                        +  L  T       F + +   ++ ++   W      +  +     H
Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             R   A++  ++G +  ++    G   +      YT 
Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340


>gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 322

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 34/287 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S   Q      + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178
           H  SS  + + ++R  F W    EY++ NP   +  PK K        +           
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
                     K+  + G +     E L  +G+R  +     +Q +  +      T K   
Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280
              V       K L+                    F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            V   S H +R  +AT   + GA   E+    G  +++  + YT  +
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
 gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380]
          Length = 332

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 104/304 (34%), Gaps = 36/304 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----------YRKITTKHI 119
             LI+ + +      +L+ ++  ++     +  R                   ++    +
Sbjct: 32  DRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVDALVL 91

Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           R  +          +  + L+++R  F++ VRQ  +A++P  +V  PKR+    +  T +
Sbjct: 92  RRYLARLHKRNRKTTIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTVD 151

Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232
           ++               + R   E    SGLR  +     V H+      ++ +      
Sbjct: 152 EVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDKE 211

Query: 233 ITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             V +     + L         P  ++  F+N    ++++       K     AG+  + 
Sbjct: 212 RIVPMGRPARQALGRYLAERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKDA 271

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           S H +R   AT   D GA    +    G  ++   + YT+ +           R+  V D
Sbjct: 272 SPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVS---------LDRLMEVYD 322

Query: 345 SDDP 348
              P
Sbjct: 323 RTHP 326


>gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 298

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 87/276 (31%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYSNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R  +++ +  +   INP + +  PK++    + + +E+M+       E
Sbjct: 65  KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
                 + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DASKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNNIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237]
 gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237]
          Length = 375

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 92/273 (33%), Gaps = 9/273 (3%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             RK     K+   EY         A N+  ++ S F+  I      D   +    +R  
Sbjct: 95  RSRKPKDGFKYCPEEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPIALNEIDVRKY 154

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++       S      ++  + K+     +   N   ++ERP+++ +     +K+++   
Sbjct: 155 LQKLIQEGKSNSYINMAVNSI-KFFYEIVHGMPNRFYAIERPRKERQLPEVISKDEIVLI 213

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG 240
            +  +   + R     L  +GLR ++     +  + +      IK  K        L   
Sbjct: 214 MNNTNT-LKHRCIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISLLSPS 272

Query: 241 FMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            +K L              + Q   K + T       + A +AG+    + H +R   AT
Sbjct: 273 ILKDLQEYYKEYRPKKFLFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHMLRHSFAT 332

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + G     +    G  +    E YT  A+R
Sbjct: 333 HLLENGTDIRHIQLLLGHSSTKTTEIYTHVANR 365


>gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703]
 gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703]
          Length = 292

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 20/286 (6%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES 125
            ++  LI +  +S      L+ N+  S+     ++  +   G  D+       +   V +
Sbjct: 1   MSMDDLIDKLLESLWLQDRLSYNTLQSYRRDLVKVAARLTEGGQDWLSADEFALSDAVYA 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    + 
Sbjct: 61  EGEKNTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAE 120

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230
                  G + +   E +  +GLR +++ +  +  +  +  SI+T               
Sbjct: 121 PDVETLHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 180

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
               VE      + L +     +  F++  +  ++     +  K  A  AG+ + S HG+
Sbjct: 181 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
           R   AT   + G     +    G   ++  + YT  A+ R++  + 
Sbjct: 241 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVD 286


>gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
 gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 99/279 (35%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127
           +  + +       L+++++ +++   + +   + + G  +++++    +R          
Sbjct: 16  LERFYEYLRSEKGLSLHTQRNYKQQLETMAGHLAQLGLKEWQQVDAGWVRQLASKGMREG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q      
Sbjct: 76  MKPSSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLEVNE 135

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +  +   I+          V       +
Sbjct: 136 DDPLAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTGMAAE 195

Query: 244 LLAMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            ++     + +   +++          +++             K  V  + S H +R   
Sbjct: 196 WVSKWLRVRPSLANSDELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G + +   + YT   D   L 
Sbjct: 256 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 366

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 110/333 (33%), Gaps = 36/333 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                +AL     + E  +       T+K  I  + ++    + + ++   ++ +   II
Sbjct: 37  KKECEAALAELINQIEKGSIITNDKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDII 96

Query: 104 RKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
              G     K+    I+   E     R  + ++ I+    + +  K A + + +  NPC 
Sbjct: 97  NYIGKHKLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLINNNPCD 156

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            V  PK   + ++ W  +++  +     E      A    + +G R  + C      +  
Sbjct: 157 LVTPPKATKQEMKYWQPDEINIYLDILKEEF-LYPAIFLAIQTGCRVGELCAIKWSDVDL 215

Query: 220 NIFSIKTQKTGTIITV---------------------------ELPDGFMKLLAMTPIGK 252
              +I+  KT   I                              L    ++      I  
Sbjct: 216 IDKTIRIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIEL 275

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
           +      D + ++    S  F     K  + K   H +R   AT+   AG  A  +    
Sbjct: 276 DYVLCWEDGRPIDPHYISQHFPKLLDKYNLPKIRFHDLRHSHATLLLKAGVNAKIISKRL 335

Query: 312 GWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
           G  TV    +TY+  +   ++  +   ++ +++
Sbjct: 336 GHSTVAFTLDTYSHVST--KMQKEEMSKVENLL 366


>gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
 gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT]
          Length = 291

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 19/278 (6%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            ++  Y +   +   L++ +   +    + +           +   HIR  + +      
Sbjct: 2   DVLQRYLEYLQFERGLSLLTVKHYRRDLELLFDLKSGMALDALQPSHIRRFIATLHGRGL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  + L+  R  F + V++     NPC  +  PK      +    +   Q      E
Sbjct: 62  SGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLVDMKGE 121

Query: 189 G---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
                + +   E    SGLR S+     +  L  +        K      V +    ++ 
Sbjct: 122 DVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSRIVPIGRHAIQA 181

Query: 245 LAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           +      ++          F+N + ++++        K  A + G+  N   H +R   A
Sbjct: 182 MQDWLAVRQPAISSDEQAVFLNRNGRRISGRAIQYRIKQWAIRRGISSNVHPHMLRHSFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    +      +    G   +   + YT   D   L 
Sbjct: 242 SHVLQSSGDLRAVQEMLGHANISTTQVYTH-LDFQHLA 278


>gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC
           14579]
 gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           14579]
          Length = 294

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
            L   Y +     + +  +  S+++  +  ++     G   +  +T   +R  + +    
Sbjct: 3   QLFVGYLQIE--RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDE 60

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
                S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     +  
Sbjct: 61  KLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVS 120

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
            +    G + +   E +  +G+R S+     +  +   + +I    K      +      
Sbjct: 121 DTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYA 180

Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              L                      F+N     + +            KA +    S H
Sbjct: 181 QDSLITYIENGRKQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPH 240

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 241 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 283


>gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
 gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222]
          Length = 299

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDSLITYIENGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
 gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC
           43184]
          Length = 302

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR- 126
           LI  +     +  + +  +  ++     Q      +         ++ T  +R+ + S  
Sbjct: 4   LIDSFLDYLRYERNYSEYTINAYFKDLQQFEDFVKEKKEGIFVPEEVDTDIVRNWIISLL 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDM 179
             K +P S  + L+S++  FK+ ++Q +V++NP   V  PK K         +   +   
Sbjct: 64  DNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLD 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   EG + RL  E L  +G+R S+        +  +   I+         +    
Sbjct: 124 GDGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQRLIPFA 183

Query: 240 GFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L +                FF+  + ++++        K + +        S H 
Sbjct: 184 ERLKNLMLAYTEVRNREVDAGCGWFFVRKNGEQLSTGILYTIVKKRLSDIPTLAKCSPHV 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + +    G  ++     YT  
Sbjct: 244 LRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHT 280


>gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10]
 gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10]
          Length = 311

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 84/291 (28%), Gaps = 28/291 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRS 121
               ++ +         L+  +  +++   D          G          ++++  R+
Sbjct: 10  WTDALAAFLAHLSGERRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRA 69

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR+    SA    + L+++R  F +A R+  V       VE PK      +P ++  
Sbjct: 70  YMASRRRDGLSARSLARALSAIRTFFDYAKRRWGVDNAALSLVESPKLLRSAPKPVSESA 129

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +   +            ++       L   GLR S++       L          K   
Sbjct: 130 AKSLLAETGARGGPDWVSARDNAVLLLLYGCGLRISEALSLTGNDLPIGDTLRIAGKGNK 189

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN- 283
              V +     + ++           ++            +A       +    + G+  
Sbjct: 190 TRIVPVLPAVAEAISQYVALCPFATKDDAALFRGVRGGNLSARSVQALMQELRGRLGLPE 249

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             + H +R   AT     G     +    G  ++   + Y        L I
Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSI 300


>gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379]
 gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379]
          Length = 295

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
             +  +         LA N+R ++     + +      G  +  ++T   I S +   + 
Sbjct: 3   EYLDLFLGYIAVERGLATNTRQAYSRDLGRYLDFLAERGKNEPAEVTAADIASFLVRLRD 62

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S  + L+++R+  K+ + ++Y   NP   +E P+   +        ++ +  S 
Sbjct: 63  EGLAPASRARCLSAIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAEVDRLFSA 122

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII------- 233
            +    E  + R   E L  +GLR S+     ++ +  ++   +   K            
Sbjct: 123 CAGTSGEDLRDRAMLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLVPIGES 182

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               V       +            F++     M+   F    + +A  A +  + S H 
Sbjct: 183 ARGRVRRYIEEARYRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKDISPHT 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT    R RL
Sbjct: 243 LRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVT-RERL 284


>gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
 gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM
           43017]
          Length = 311

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
           L+ +++ Y          A N+   +     + +    D    D R++   H+     S 
Sbjct: 9   LRVVVAAYVDHLTVERGTARNTVDGYARDLRRYLAHLADAGVTDLRQVARDHVVGFAASL 68

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +H         PSSA + L+++R L ++A  + +   +P   V  P       +     D
Sbjct: 69  RHGEGDRPPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVAD 128

Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           + +  +  +       + R   E L  +G R S++    V  +     ++    K G   
Sbjct: 129 VLRLLNTPTGDDARSLRDRALLELLYSTGARISEATGLDVDDVDRAERTVVLDGKGGRQR 188

Query: 234 TVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGV 282
            V +    ++ L    I                F+N    +++        K  A +AG+
Sbjct: 189 LVPVGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGAWQVLKVAAERAGI 248

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 249 STPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 291


>gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 303

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 100/299 (33%), Gaps = 31/299 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------SGDFDY-RKITTKHIRSGV-- 123
           +  +          + N+R ++ +   Q+           GD D       + + S +  
Sbjct: 5   VDNFLNYLMVEKGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLD 64

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178
            + R +  ++ ++ L + +  F + + +  +  NP  ++E PK         + +     
Sbjct: 65  LKERNYAVTTVVRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKAL 124

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             Q   +   E  + R   E L  SG+R S+     +  +  +   ++          + 
Sbjct: 125 LEQPTLAGGPEAKRDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERIIP 184

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           +     ++++                   F+N   +++         K  A  AG+N   
Sbjct: 185 IHPQAARIVSEYIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNGQV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSV 342
           + H +R   AT   + GA    +    G   +   + YT   +D IR    ++   +  
Sbjct: 245 TPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHPRARK 303


>gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 337

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 23/333 (6%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R GK    +R      G+RI   +  +      +M+ L         + +          
Sbjct: 7   RKGKKSITYRVEFMRDGKRISKSFKLKKE-AQTFMALLLVDNDLANSLTNHILTTLNFSD 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131
            + +     +    + + R          +   G     K+T + +++ ++   +   P+
Sbjct: 66  AVKKLLDQDNGRDPSKHQR------LRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPA 119

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFKSFWSEG 189
           +  ++  ++  L+++   +  +  NP   + +        R  + E+  +       S+ 
Sbjct: 120 TLNRYKAALGSLYRYLSDEFDIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKW 179

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            Q  L     + +G R S+        +        +   K G    + L    +  L  
Sbjct: 180 DQLFLLVLMAITTGARRSEMLTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMK 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                   F + D   +    F I +++   +  + +   H +R   A++ A  GA+  E
Sbjct: 240 YRCIGGYVFPHPDDPTIYFRNFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLE 299

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    G K++   + Y+       L I++  ++
Sbjct: 300 IAQVLGHKSITMTQRYSH------LCIEHKAKL 326


>gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
 gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp.
           HGF2]
          Length = 307

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 96/307 (31%), Gaps = 38/307 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---- 122
           L+  + +Y          ++ +  S+     + +      G  +   I  + I+S     
Sbjct: 3   LQEALQDYLHYIQAVDQKSLATIHSYTQDLQEYLSWLQMQGKTEMEDILPRDIQSFLSDM 62

Query: 123 ------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +   +  SS    L+S+ +  ++        ++P + +   K++ +    +  
Sbjct: 63  EQGDIQEDGLCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNP 122

Query: 177 EDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232
            D++     + +   G   +   E L   GLR S+ C   +  +      ++        
Sbjct: 123 HDIELLLDSFGQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYLRVIGKGDKE 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN 283
             V + +  M++L          +      ++                  K +    G++
Sbjct: 183 RMVPMHERCMRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIKQRLQALGLD 242

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              SAH  R   AT   D GA    +    G   +   + YT   +R         R+  
Sbjct: 243 ERLSAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNR---------RLKE 293

Query: 342 VVDSDDP 348
            +D   P
Sbjct: 294 AIDQYHP 300


>gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
 gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823]
          Length = 301

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 27/290 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES 125
             T+K  +  Y K     SLA NS  +++    ++      +      I T H++  V  
Sbjct: 5   ERTIKQFVH-YLKIE--RSLAENSIFAYQQDIAKLRDFCESYTLSPEHIQTGHLKQFVAE 61

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +  S  + ++  +  F + V +E    +P  ++E PK   +     T E++   
Sbjct: 62  LYDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDAL 121

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVE- 236
                   +EG + +   E L   G+R S+              F     K      V  
Sbjct: 122 IDAIDLSSNEGQRNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVIGKGNKERLVPV 181

Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                       +     L +    ++  F+N    ++         K  A  AG+ K  
Sbjct: 182 SPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGIKKNI 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGI 333
           S H  R   AT   + GA    +    G +++   E YT    R +R  I
Sbjct: 242 SPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAI 291


>gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
 gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565]
          Length = 293

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G+FD  ++  + IR  + S   
Sbjct: 2   LIESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + L+++R  +K+ +++  V ++P   +  PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLLDE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +      T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGVNK-SAHGV 289
                +      +        +                +++  +  +  A + K S H +
Sbjct: 182 ELRDWMLGYIDVRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNNAELGAVKELLGHESITTTEIYTHA 277


>gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
 gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002]
          Length = 296

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 89/267 (33%), Gaps = 22/267 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSM 140
            L+ N+  ++     ++  +  +     +    +     +      +   ++  + +++M
Sbjct: 20  GLSRNTLSAYRRDLLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQEKATTRARLVSAM 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R  +++         +P  ++ERPK      +  +++ +             G + R   
Sbjct: 80  RRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEAPDVATPLGLRDRAML 139

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT------- 248
           E L  +GLR S+     +Q +   +   +   K G    V + +     L          
Sbjct: 140 EVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLVPMGEVAQDWLGRYLATGRPA 199

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
               +  E  F+   K  M            A + G+   S H +R   AT   + GA  
Sbjct: 200 LLTGVPCEQVFVTRLKAGMTRQMAWHLISGYARRQGLPPVSPHTLRHAFATHLVNHGADL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT  A R RL
Sbjct: 260 RVVQLLLGHSDISTTQIYTHVA-RERL 285


>gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 302

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129
             EY  S     L+ NS  S+    ++             ++    I   +E    RK +
Sbjct: 16  FQEYL-SVE-KGLSDNSIYSYGYDLNKFAIFLEKEHINFLEVKANDIMRFLEEERERKIS 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + + ++R  +K+   ++ +  NP   +E P+         T+ ++++      E 
Sbjct: 74  AKTLAREVVAIRQFYKYLRDEKRLDSNPTEKIETPEVARTIPDYLTQAEIEELFRNIKED 133

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKL 244
                + +  FE L  SGLR S++C   +  +   N+      K G    V   +  +++
Sbjct: 134 NLYELRDKCIFELLYSSGLRISEACNLKMTDIDMENMTITVEGKGGRQRLVPFGEKSLEI 193

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L                 +  F++     +N             +  + K  + H +R  
Sbjct: 194 LKRYLVESRTEILKKRTCDFVFVSKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHS 253

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +  A    +    G   +   + YT  A++
Sbjct: 254 FATHLLENHADLKSVQELLGHIDISTTQIYTHMANK 289


>gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51]
 gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 12/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSA 133
           I  +        L+  +   +                 +ITT  +R    E +    SS 
Sbjct: 17  IQLFLAGKKLEGLSDLTLKGYGIELRIFAEHV-HKAADEITTADLRLYLGEFKGLRLSSI 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L+ ++  F W   ++ +  +P   ++ PK++    +  + E+++  +       + R
Sbjct: 76  SGKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-ITPRER 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              E +  +G R S+  +     +     S     K     TV      M  L    + +
Sbjct: 135 ALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYHLKKYLMRR 194

Query: 253 E------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                          ++++A       K  A ++ V K    H +R   AT+  + GA  
Sbjct: 195 ADEAEALFITERRPYRRLSARGIQREVKLIADRSEVRKNVHPHVLRHTFATLMLNNGADI 254

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             + A  G +     + Y +  D  +
Sbjct: 255 ASVQALLGHEDPGTTQIYAQSTDERK 280


>gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 347

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 122/337 (36%), Gaps = 14/337 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +      G++IR                 + G   + ++ +    +  TL  L 
Sbjct: 5   KRGALWWMRFSVQGKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKTLSELF 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132
            +Y +     + +  S I  ++   +++++ GD    +I T+ I    + R+     P+S
Sbjct: 65  DKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREENLAPAS 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + +  +R  F+ AV   ++ +NP   + R K K    R  T E+ ++      E  + 
Sbjct: 125 LNKEIAFLRHAFEMAVLWGWLEVNPVSRIPREKVKNRMERWLTGEEEERLLKACPEWLRD 184

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIITVELPDGFMKLLA 246
            + F   L +G R ++        +                +    +  +  D   ++  
Sbjct: 185 MVIFA--LNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAIDVLKRIGK 242

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
           +  +     F+ ++     A      F     KA + N   H +R   AT    AG   +
Sbjct: 243 VKSLSSGHVFLTSNGTPFIARNVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLY 302

Query: 306 ELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341
            +     W+++     Y     + +R G++   R++S
Sbjct: 303 TVQRLGRWRSLSMVMRYAHHNLESLRTGMEAVNRLAS 339


>gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM
           16992]
          Length = 308

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 92/288 (31%), Gaps = 36/288 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES--RK 127
                Y K+     L+ N+R ++    ++ +    + G  +  ++T + +R  +    +K
Sbjct: 8   EAFDTYLKAN--RGLSENTRKAYRGDVEECLLALERLGCRNLNEVTIEDLRMWMAESSKK 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H  SS  +   ++R  F W         +P   +  PK         ++   +Q      
Sbjct: 66  HAKSSMARKTVAVRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVD 125

Query: 188 EGS-----------------QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKT 229
           E S                 +     E L  +G+R ++         + +N     T K 
Sbjct: 126 EDSETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKG 185

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
                +       K +                    F+    ++++         A A  
Sbjct: 186 NKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARD 245

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AGV   S H +R  +AT   D GA   E+    G  ++   + YT  +
Sbjct: 246 AGVPDISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293


>gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
 gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685]
          Length = 308

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 19/277 (6%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + LI    ++      L+ N+  S+    ++I R+        R      + + V     
Sbjct: 20  EDLIDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLAAAVYVAGE 79

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  S    
Sbjct: 80  ERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDT 139

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTII 233
               G + +   E +  +GLR S++ R    +L  +   I                 ++ 
Sbjct: 140 DTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVPMGRESVY 199

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
            VE      + L +     +  F++  K  ++     +  K  A++AG+   S H +R  
Sbjct: 200 WVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIEHISPHSLRHA 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT     G     +    G   ++  + YT  A+  
Sbjct: 260 FATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVR 296


>gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
 gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574]
          Length = 300

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 27/283 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS--- 121
           L+  +        + + ++  +++    + I                 +I ++  R+   
Sbjct: 4   LVDHFINFLKVQKNFSDHTIEAYQKDLFEGIDFFSTVLNVCDEKLHPSQIDSRLFRNFLS 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++ R    S+  + L + R  F++  R+  V  NP L +  PK++    +   +++ ++
Sbjct: 64  HMQERNLQRSTIARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKE 123

Query: 182 FKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                     G + R   E L  +G+R S+     + HL  +   ++          V +
Sbjct: 124 LVESPGNTPLGVRDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKERLVPI 183

Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
            D  +  L                   F+N    +++             + G+ K  S 
Sbjct: 184 HDRAVAALKRYLTEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLTKNISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   D GA    +    G  ++   + YT    + 
Sbjct: 244 HVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQK 286


>gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A]
          Length = 293

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G F+  ++  + IR  + S   
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            ++ L +  I             FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTP---SSAIQF 136
              +  +  S+     Q                KIT+  +R+ +          S+  + 
Sbjct: 26  KRSSAATLRSYAKDISQFEEFLETRKKTLAVPEKITSDLVRAFLAKLHGQRLAKSTMSRK 85

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           L+S+R  FK+  +  ++  +P + +  PK++    R    +                 + 
Sbjct: 86  LSSLRSFFKYMTKHRFIQNDPMVGIRNPKQEIRHPRSLNVDQAVNLMDAHVGDEPADKRD 145

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251
               E L  SGLR S++    +  +  +   ++            L D   K +      
Sbjct: 146 LALAEMLYGSGLRVSEAITLDLFDIDTSSGVVRVSGKGNKERLSPLSDAACKAVNDYLAV 205

Query: 252 K---------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
           +         +  F+ N   ++N  Q +      A  AG++     H +R   A+    +
Sbjct: 206 RAELGPALEEQALFVGNRGGRINRRQVNRILARMAEGAGLHEGVHPHMLRHSFASHMLQS 265

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G + +   + YT 
Sbjct: 266 GADMRSVQELLGHEHLSTTQRYTH 289


>gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
 gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ]
          Length = 307

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 21/281 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
            +  Y +       LA +S  ++ +     +    D       +T   +   +   +   
Sbjct: 15  WVENYLEHLIVAKGLAEHSIKAYSTDITDFLIFLNDHAGSLETVTDDTLFLYLMHLRSRG 74

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + L+++R  F +A  + ++  +P   +E PK         +++D+ +      
Sbjct: 75  LASRSLARHLSALRGFFAYAAGEGWLPESPAALIENPKLPRLLPDVLSRDDVARLLDAPD 134

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+    A               K      + +     
Sbjct: 135 TATPLGYRDRTMLELLYAAGLRVSELIGLALTDFDAQAGLLRVFGKGSKERLIPIHALAQ 194

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           + L+         F   ++           +        K  A  AG+  + S H +R  
Sbjct: 195 EFLSTYIQTIRGAFHPKEQFVFLNRSGRGLSRQAVWKGIKRHALVAGISLHISPHSLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   D GA    +    G   +   E YT       L +
Sbjct: 255 FATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAV 295


>gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 303

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 22/296 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH 128
               +Y        + ++ +  S+ +        +   G      +T   ++  ++ +K 
Sbjct: 5   DAFEDYLHYIQVVENKSLATVASYRNDLKEYLAFLDAHGFTAIEDVTYMDLQDFLKEQKV 64

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS    +TS+R+  ++         +  L +   K   +    +   D+++    +
Sbjct: 65  KKKTSSVNHMITSLRMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLLDSF 124

Query: 187 SEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242
            +       +   E L   GLR S+     +              K      V +    +
Sbjct: 125 QDSDMDIFHKALLEVLYGCGLRVSELTHLRLNMTHLEQGFLKVLGKGEKERMVPMHQRSV 184

Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
             L          ++             Q ++        K+K T  G++   SAH  R 
Sbjct: 185 HALQQYLEFVRPQWVKQRSPFVFLNSRGQNISRQYVHNLIKSKLTALGLDERLSAHSFRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AT   D GA    +    G   +   + YT   +  RL    +       + DD
Sbjct: 245 SFATHLLDGGADLRVVQELLGHADIATTQIYTHIQN-KRLQDAYASFHPRSKEEDD 299


>gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355]
          Length = 301

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126
           L+  +  + +       L+  +  S+      ++  + +       ++    +RS     
Sbjct: 5   LQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARS 64

Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +A      L+++R    W V ++ +A NP   +  P+      +    +D+ Q  
Sbjct: 65  RRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLL 124

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +   GLR S+      +H+           K      V +  
Sbjct: 125 EIDLTDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGR 184

Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F   +          +++A      F     K G+  +   H +R
Sbjct: 185 TAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISSHIHPHKLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285


>gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 307

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 91/290 (31%), Gaps = 26/290 (8%)

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125
             +  Y  + A     +V++   + +          + G      +T + IRS       
Sbjct: 15  DALDSYCVERASVRGDSVHTVRGYRNDLLDFGRWAARHGIVPL-DVTYRQIRSYLGEQNQ 73

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +   +  + L+S+R  F+W      V+ +P   V  PK      R     DM +  + 
Sbjct: 74  AGYARRTINRRLSSLRGFFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILNV 133

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                  E  + +   EFL  SG R S++       +  +   ++          V L D
Sbjct: 134 HHSSSEPEDMRNQAILEFLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHD 193

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287
             +  +             +              M+       FK     AGV+   + H
Sbjct: 194 LAVSSMRAYAEHARPQLQGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   D GA    +    G  ++   + YT  +      + ++ 
Sbjct: 254 DMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAA 303


>gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
 gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776]
          Length = 315

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTS 139
            LA N+ IS+E    +        G      IT + +      +   K   S+  + L S
Sbjct: 37  GLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLSGYLRYLHELKLATSTIARHLVS 96

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           +++ F++ + +  +  +    +  PK      +  +++ + +             + R  
Sbjct: 97  LKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSEDAVNRLLDAPMHQDLNPYRDRAL 156

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
              L  +G R S+ C   ++ LQ +    +          V L    +  L         
Sbjct: 157 LAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKERLVSLNPVAVSALKTYLARERP 216

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
                      F +   + ++  Q     K  A++ G++   + H +R   AT     GA
Sbjct: 217 ARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGLSDAVTPHTLRHSFATHMLANGA 276

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               L    G  ++   + YT  
Sbjct: 277 EIRALQELLGHASIRTTQIYTHV 299


>gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
 gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680]
          Length = 306

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125
           +  + +        +  +   + S  ++ +    D          +  +  + +R  +  
Sbjct: 9   VKRFLEHLEIEKGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEVLDPRTVREYLAH 68

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +      S+  + + ++R   K+    + + +NP  +V  P+R+    R    ++++  
Sbjct: 69  LQECGLKRSTMARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLYSQEVEAL 128

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVEL 237
            +        G + +   E L  +G+R  +              F     K      V +
Sbjct: 129 LAAPDGGDVLGLRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRVMGKGSKERIVPV 188

Query: 238 PDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVN 283
               ++ +                  +   F+N    +++A                 + 
Sbjct: 189 GARAVEAMNRYLNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIVNRYVEEIALRLK 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H +R   AT   + GA    +    G   +   + YT            + R+ ++ 
Sbjct: 249 ISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVT---------AERLKNIY 299

Query: 344 DSDDP 348
           D   P
Sbjct: 300 DDKFP 304


>gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 283

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 12/282 (4%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
              K   L   I EY +     + +  +    +   ++     GD   + I  KH+   +
Sbjct: 10  SEGKKIKLSEFIEEYLEWCR-ENRSDETFKKAQYVLNKFKDYIGDIYVKSINKKHMDDYI 68

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + ++A   + +++     AV  EYV  +P    +  K + +  +    + ++
Sbjct: 69  SKLLSEGLSRTTANIHIRTIKSALTKAVEWEYVKEHPLRGYKLLKIQQKPPKFLLPQQIK 128

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           + +    E     +   F +Y+G+R  +  R   +H+  N   I  +K+ +  +  +P  
Sbjct: 129 EVEKIIDEEIWQFVFRLF-IYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIH 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299
                 +                          K    KAG  +   H +R   A++   
Sbjct: 188 P----TLKKDIIRYKKDIGKVVPFKRRYIQERLKNYFRKAGYPDLRVHDLRHTFASLMVM 243

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           AG     +    G ++    E Y   A       +  ++   
Sbjct: 244 AGVDLKTVQELLGHQSYRTTEIYAHLAP--HHLKEAIKKFPG 283


>gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
 gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  +++ +          + N+  ++     + +      G  D  ++TT  + + V   
Sbjct: 2   LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +             SSA + L   R L K+A+ +  V  +    V  P          T 
Sbjct: 62  RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121

Query: 177 -------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                  + +    +      + R   E L  +G R S+     V +  +N   ++    
Sbjct: 122 AEVTQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279
                 V +    M  +    +     F       +         +        K  A +
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           A +  + S H +R   AT   + GA    +    G  +V   + YT   A+ +R  
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297


>gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC
           BAA-613]
          Length = 331

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 12/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130
           +  +     + + + ++   ++ +   ++   G    ++IT + +   +      R+ + 
Sbjct: 56  LDIFIGKMRFENYSASTVNQYQRFLTDLLVYVG-KPVQEITGEDVVECLNYYEQVRQIST 114

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+           F +   + Y+  NP  +V+  K   E     T  ++++ +       
Sbjct: 115 STKDHKRRIASSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSREVEKLRIACGGNV 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +     E  L +G R S+     V+ +   +       K      V   D  M+ L    
Sbjct: 175 RDNAVLELFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQKERIVFFGDRAMEYLERYL 234

Query: 250 IGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
            G+             Q +         +  A +AG+ K    H +R   AT + + G  
Sbjct: 235 DGRRAGAVILSSRAPHQGLKKNALENIIRRIANQAGLGKRVFPHLLRHTFATRALNKGMP 294

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G  +V+    Y K
Sbjct: 295 LPTLCDLMGHASVETTRIYAK 315


>gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126]
 gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126]
          Length = 299

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121
               ++EY+       SLA N+  ++     ++ +   D   R +    +          
Sbjct: 3   WDVFLTEYKNYLQLERSLAENTVAAYVHDVIKLKQFL-DISNRNVDPLQVSSTDLHNFLE 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            V     T  +  + ++ ++  +K+ V ++ +  NP   +E PK   +     + ++++Q
Sbjct: 62  YVNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDEIEQ 121

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             S        G +     E L  SGLR ++     + +   ++  ++          V 
Sbjct: 122 IISSIDRSTANGQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRIIGKGSKERLVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK- 284
           +     K L +             + +            +        K +   AG+ K 
Sbjct: 182 MGKSAAKQLKIYLTEVRVHQKPKPEARDIVFLNRFGGAISRISVFTMIKKQCVMAGIRKN 241

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282


>gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 305

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  +++ +          + N+  ++     + +      G  D  ++TT  + + V   
Sbjct: 2   LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61

Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +             SSA + L   R L K+A+ +  V  +    V  P          T 
Sbjct: 62  RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121

Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            ++ Q                + R   E L  +G R S+     V +  +N   ++    
Sbjct: 122 AEITQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279
                 V +    M  +    +     F       +         +        K  A +
Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           A +  + S H +R   AT   + GA    +    G  +V   + YT   A+ +R  
Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297


>gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 313

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 25/288 (8%)

Query: 75  ISEY-RKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KH 128
           + +Y  + A   + + ++  ++        R +     D  +IT + +R  +      ++
Sbjct: 23  VDDYCLEMAQVKNASAHTVRNYRIDLLDFGRWAVRCHVDPMRITYRQVRRYLGELTQAQY 82

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           +  +  + L++++ LF+W      +  +P   ++ PK      R     DM +  + +  
Sbjct: 83  SRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKGLPRMIPASDMGRILTVYKD 142

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  + +   EFL   G R S++    +  +  +        K      + L D  +
Sbjct: 143 SDDPADMRNQAILEFLYACGARISEASGLMLADVDFDAKQVKVFGKGSKERIIPLHDMAV 202

Query: 243 KLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
           K +                 E FF++    +M        FK     AGV+   + H +R
Sbjct: 203 KTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAMRKMFKNTLIMAGVDTSYTPHDMR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              AT   + GA    +    G +++   + YT    D ++  +  + 
Sbjct: 263 HTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAH 310


>gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
 gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 85/306 (27%), Gaps = 41/306 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           I  + +        A N+  S+    D     +   +   + T  I + +          
Sbjct: 7   IESFLEMLSAERGAAENTLQSYRRDLDDFAEFTAPQNPSAVNTDRISAYLRDLSLRGFAE 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------------- 177
           +S  + L++++  FK+         +P  ++  PK++    +  + +             
Sbjct: 67  TSQARRLSALKQYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLIGEAQQAA 126

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----------SIK 225
              Q   +      +     E L  +GLR S+     V   Q +              + 
Sbjct: 127 TKKQDSPAKQLRAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGKGGKERLV 186

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                    +         L         F  +          F    K  A    ++  
Sbjct: 187 PLSPAAQKAMRDYIRQRAELGAYATSPWLFPSHGKSGHFTRQAFGRDLKDLAVDTKIDTD 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   A+     GA    +    G   +   + YT   D          R++ +
Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDE---------RLTQL 297

Query: 343 VDSDDP 348
           V+S  P
Sbjct: 298 VESAHP 303


>gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
 gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46]
          Length = 312

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 91/272 (33%), Gaps = 33/272 (12%)

Query: 85  GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT----------PS 131
             L+ N+  S++   ++    +R+ G  +  ++T + +   +                P+
Sbjct: 19  KGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVSEFLAYLARGDKSEGRPALAPT 78

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + L+++R   K+AV +  + ++    V  PK+ +   +  + +++ +      +   
Sbjct: 79  SVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIESIPDDGT 138

Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
                 + R   EFL  +G R S+     +  +      +    K G    V +    M 
Sbjct: 139 AVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIVPVGSPAMA 198

Query: 244 LLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRK 291
            L          ++  +              +             +AG+    S H +R 
Sbjct: 199 ALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVKISPHTLRH 258

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
              T   + GA    +    G  +V   + YT
Sbjct: 259 SFGTHLIEGGADVRVVQELLGHASVTTTQIYT 290


>gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 362

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 102/332 (30%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 9   TGRRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 63

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 64  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 123

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        + F   L++
Sbjct: 124 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYAKIQGSYYITFVLALHT 183

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +        +     +I  Q+T                    I     +   +LL
Sbjct: 184 GMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 243

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 KE  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 244 EYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 303

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 304 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 335


>gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
 gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590]
          Length = 297

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 90/267 (33%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+     Q             T      ++  S + ++    ++  + +++
Sbjct: 16  RNFSDHTIKSYHDDLMQFNEFLAQEMLTLSTFEYKDARNYLSYLYNKNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + + +M            +G + R+ 
Sbjct: 76  LRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDALFETVLHDAKKGLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+        +           K      +   +   + +         
Sbjct: 136 LELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKERFLPFGEFCKQSIEQYLLEFGP 195

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                     +N + Q +              + AGV +   H +R   AT   + GA  
Sbjct: 196 VKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGA-DRIR 330
             + +  G   +     YT  + D++R
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSKDQLR 282


>gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 326

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 43/301 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           +  Y  +      L+ N+  S+     Q+   +G+    ++++  IR  V        +P
Sbjct: 11  VKSYLDTLSGQRKLSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFVSRLHASGLSP 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L++ R  F+W V +  ++ NP   +  PK+     +  + +D  +  S     +
Sbjct: 71  RSIGRKLSAWRGFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADT 130

Query: 191 Q-----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                        R  FE L  SGLR S+     +Q ++   +                 
Sbjct: 131 NASSAGQAAALCDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTG 190

Query: 233 ------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                      +      P      F+N+  ++++  Q  +  K
Sbjct: 191 KGNKTRIVPAGDAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLK 250

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A A + G+      H +R   A+    +      +    G  ++   + YT   D   L 
Sbjct: 251 AHAKRLGLPVNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQHLA 309

Query: 333 I 333
            
Sbjct: 310 A 310


>gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.]
          Length = 310

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 42/297 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVE----------SRKH 128
              +VN+  ++ +   +    + +          +I+T  +                +K+
Sbjct: 21  KGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDANYLLIRAYLGFLHKKN 80

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              S I+ L+++R  FK  VR+  ++ NP   +  PK+        T ++M +       
Sbjct: 81  KKKSIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAYLTVDEMFRLLDSIKT 140

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R  FE +  SG+R S+     V  +           K G    V +    M 
Sbjct: 141 DTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIKVFGKGGKERIVPIGSKAMD 200

Query: 244 LLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
            +       +   I          N +K ++     +   +   ++    V  S H +R 
Sbjct: 201 TIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLEKFVSEFCISVPVSPHALRH 260

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   DAGA    +    G K++   + YT              R+    D   P
Sbjct: 261 SFATHMLDAGADLRVVQELLGHKSLSTTQRYTHV---------GIDRLMETYDKAHP 308


>gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
 gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2]
          Length = 307

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
            +  Y +       L+ NS   + +    ++    +       +T + +   +   +   
Sbjct: 17  WVDGYLEHVLIEKGLSENSLSGYSADLASLLAFLEEKSFRLEDLTERTLFLYLTYLRARG 76

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
               S  + L+S+R  F +A+ Q +   +P   +E PK   +     T+E+M +      
Sbjct: 77  LQSRSLARHLSSLRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREEMSRVLALPE 136

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +    G + +   E L  +GLR S+     V  +           K      V +     
Sbjct: 137 TATKLGMRDQAMLELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERLVPIHYVAQ 196

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            +L+   +     F                         K  A KAG+ +S   H  R  
Sbjct: 197 DVLSRYLLNTRPAFRPAVDFMFLNRSGKGLTRQGVWKLIKTYADKAGIKRSISPHTFRHS 256

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            AT   + GA    +    G   +   E YT   A R+R
Sbjct: 257 FATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLR 295


>gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
 gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22]
          Length = 300

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 95/282 (33%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---V 123
           L   +  + +       L+  +  +++   D +     ++G   +++     +RS     
Sbjct: 6   LSACVDRFLRYLGVERQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P+S    L+++R  F W V Q  +A NP   +  PK      +    +D+ +  
Sbjct: 66  RRAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL   +       K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  ++D        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
 gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5]
          Length = 355

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 89/319 (27%), Gaps = 36/319 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ----I 102
           A   S P+ +        P T   +  ++ +         L+  +  ++E    Q    +
Sbjct: 29  AKRTSKPQAQPDPGSIALPATGDFQAEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFL 88

Query: 103 IRKSGD----FDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
               G       +  I    +R+ + SR+       S ++ L  +R   ++  R+    +
Sbjct: 89  AEHWGKPVSLASFAGIEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKV 148

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRC 206
               ++  PK      +P      +          + R  + +            SGLR 
Sbjct: 149 GALSAIRAPKISKSLPKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRI 208

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---- 262
           S++     + +           TG      +      +L                     
Sbjct: 209 SEALGLARRDIPEPGRGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPDKPVF 268

Query: 263 ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
                  ++     +  +      G+    + H +R   AT     G     +    G  
Sbjct: 269 VGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHA 328

Query: 315 TVDQAETYTKGADRIRLGI 333
           ++   + YT G D  RL  
Sbjct: 329 SLSTTQIYT-GIDAERLMD 346


>gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
 gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem]
          Length = 293

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 29/294 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127
           + ++        +++ ++  ++ S  +Q +             ++    IR  +      
Sbjct: 5   LEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAREREAPRAEEVDHLAIRRYLAQLHKG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+++R LF++ +R+  +  NP   V  PK++         + +    +  +
Sbjct: 65  CAKSSIGRKLSAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSALVTAPA 124

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E L   G+R S+     V         +    K G    V +     
Sbjct: 125 GSSGLPLRDRAVLETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAR 184

Query: 243 KLLAMTPIGKETFFI------NNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSA 294
             LA     +           N    ++     +           A    S H +R   A
Sbjct: 185 SALAAYLAERADPGPAEPLILNARGGRLTRRSVARIVDAHMLLIAAMRKVSPHTLRHTFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    +    G  ++   + YT  +           ++  V D   P
Sbjct: 245 THLLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDKLMEVYDKAHP 289


>gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 91/327 (27%), Gaps = 28/327 (8%)

Query: 24  YFRKGHGR--RIRLPYP-HESTFIPAYMSALTGS------TPKREYINSPRKKP-TTLKW 73
            F+   GR  RIR   P +       Y   +  +               P+++P  +   
Sbjct: 9   QFQHPDGRIERIRRRSPVNTRRGAQQYEREVRSALLSGTYQKGDTTRQEPKQEPCPSFAQ 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
             S++  +    +   +S  S  S  +  +    G     +I  + I       ++  + 
Sbjct: 69  FASQFIDNYATVNNKPSSVRSKRSMLEHHLTPFFGKMRLSQIGPRQIERYKALKAKTLSA 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    LT++R +   A    Y+   P  SV+  +      R    E+  +      E  
Sbjct: 129 KTINNHLTTVRKMLVVASEWGYLEAVP--SVKWMRAPKPEFRFLDFEEADRLLEGAKEEP 186

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPD 239
                    + +GLR  +        +      +  ++                 + L +
Sbjct: 187 MWWTMILVAMRTGLRQGELLGLRWCDVDLKSGRLVIRQAVAEGIVGTPKNHRQRELPLAE 246

Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
              + L           F   D   +              KAG+     H +R   A+  
Sbjct: 247 SVHQALEAWRHRLGPLVFCQPDGTMLTKNMCKWPLIRAKRKAGIEALGWHDLRHTFASHL 306

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     +    G  T++    Y  
Sbjct: 307 VMRGVPLRAVQELLGHSTIEMTMRYAH 333


>gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 305

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK- 127
             I  +  +      LA NS  ++      + +        D   +T K + + +  R+ 
Sbjct: 13  EAIERFCDACWLEDGLAKNSLSAYRRDLLLLAQWLYQQSGVDLYAVTEKDLTAYIAHRRA 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++A + LT  +  ++ A+R   V  +PC+ +   K+     +  +++ +    +   
Sbjct: 73  DKATTANRRLTVFKRFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPD 132

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
                G + R   E +  SGLR S+        L  N   ++           V      
Sbjct: 133 IETPLGLRDRTMLELMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFGGEA 192

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
            + L                    F   +    +    F    K  AT A +    S H 
Sbjct: 193 GQWLRRYLAEARTPLLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATVANIPVALSPHT 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 294


>gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
 gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium
           IMCC3088]
          Length = 306

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 23/283 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK 127
               +++   A     L+ ++   ++   D  + +    D   I      H+RS   S +
Sbjct: 8   SEAAAQFITYARDVKQLSAHTLKHYQRDIDSFVAQLEPSDADNIHSLKEYHVRSWANSLR 67

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P+S  + L+S+R  F++  ++  ++ NP   V  PK+  +  +    + + Q   
Sbjct: 68  RKGLAPASIARHLSSVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQINQCLV 127

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
             SE    ++     E L   GLR S+     +  +         T K      + +   
Sbjct: 128 APSESDLDTRDLAMAELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGV 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKAT--KAGVNKSAHGV 289
            +  L                  +         +           A      V+   H +
Sbjct: 188 ALDALKKWMRQHPLAGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMM 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 248 RHSFASHLLESSGDLRAVQELLGHSNISTTQIYTH-LDFQHLA 289


>gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 318

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 97/314 (30%), Gaps = 27/314 (8%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A   A     P       P+ +   L   I           L+ N+  ++        R
Sbjct: 3   DAPKKARESQIPDDWPPPLPQSQ-HALDQFIDALLLED---GLSRNTLSAYRRDLTATAR 58

Query: 105 KSGDF-DYRKITTK---HIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                   + +       ++    +R      +S+ + LT +R  F WA+R++ +A +P 
Sbjct: 59  WLARLQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           + +   K+     +  T+E ++            G + R   E +  SGLR S+     +
Sbjct: 119 VRMLAAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCM 178

Query: 215 QHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             L                 +          +E      + + +     E  F+      
Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAG 238

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M+   F +  K  A  AGV    S H +R   AT   + GA    +    G   +     
Sbjct: 239 MSRVMFWVIVKKCAQIAGVNSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298

Query: 322 YTKGADRIRLGIKN 335
           YT  A      +  
Sbjct: 299 YTHVARERLKALHA 312


>gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
 gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565]
          Length = 319

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 103/297 (34%), Gaps = 25/297 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SL+ N+  ++ +  D+++        +   +    ++          
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFLTLEGINILDVCLADLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F++ +  +Y+  +P   +E P    +     T E++ +      
Sbjct: 76  IHPRSQARILSGIKSFFRFLIMADYLEADPSELLESPNIGLKLPEVLTVEEIDRIIATVD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
              +EG + R   E L   GLR S+     +  L  +  F     K      + +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQRLIPISPRAI 195

Query: 243 KLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             + +    +    + +             ++++        K  A +A + K  S H  
Sbjct: 196 NEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASITKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNVLRSEIIEHHPRNIKYR 311


>gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum]
 gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 321

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 82/275 (29%), Gaps = 21/275 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV 123
              + ++ +       +  + +++    D   R           D    +         +
Sbjct: 23  DDAVRDFLEELAQSGHSPRTLMAYRRDLDAFRRFLLLRGKDSPSDPSIDRTLALSYLFDL 82

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E +++ P S ++ L+S+R  ++W  R+     NP   +  P+R        ++ +M    
Sbjct: 83  EQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGPRRPKTVPTVLSEREMATLL 142

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELP 238
                   E  +  +  E    +G+R S+                    K      V L 
Sbjct: 143 ESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPGMDRIQVRGKGNKERMVPLL 202

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN---KSAHGVR 290
               +LL      +                 S+       + +   +G+     + H  R
Sbjct: 203 GLTRELLRDFLSEEGGPGAPLFAVSPGGEALSVHQIGRIVRRRVRLSGLGDRGVTPHTFR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   D G    ++    G +++   + YT  
Sbjct: 263 HSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHV 297


>gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
 gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259]
          Length = 296

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 98/290 (33%), Gaps = 24/290 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR- 126
             LI  +         LA  +  ++                     +    + + +  R 
Sbjct: 3   DALIDRFCDHLWLEDGLAELTLAAYRRDLRSFAGWLDKTRARSLDAVAPGDVEAYLGWRF 62

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P SA ++ ++++  +++ +R+  +A +P L+++RPK         ++ D+++   
Sbjct: 63  AHHVGPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSETDVERLLE 122

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                  +G + R   E L  +GLR S+     +  L  +   ++          V L +
Sbjct: 123 RADSDTPQGLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRVTGKGNKDRLVPLGE 182

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             ++ L                 +  F+      M    F    K +A  AGV +  S H
Sbjct: 183 EAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A      +  + 
Sbjct: 243 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAH 292


>gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 102/353 (28%), Gaps = 24/353 (6%)

Query: 6   RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57
           R    +  E    G   YY R    +   R I+L    + T   A               
Sbjct: 28  RRAKGLALEVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGV 87

Query: 58  -REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                 + +K   T +    + Y   +     +  +  +       +I   G     +IT
Sbjct: 88  DPLKERAGKKLVPTFEAFAWNSYMPFSQANKRSWKTDETLIRT--HLIPAFGKKHLDEIT 145

Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRK 167
           T+ + S  +        P S  + L  +R +F  A R   +          + + +   K
Sbjct: 146 TEDVLSMQQAGLKAGAAPGSVNRRLILLRYMFNTAWRDWKIAGVKENPTHGVRLLKENNK 205

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            E      +      +   S+ +  +    FLL +G R ++   A  Q +       +  
Sbjct: 206 KERYVRADEMARLYAEICSSQNTMLKHVVAFLLLTGARRNEVLHATWQDINLTTGKWRIP 265

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN- 283
            T +     LP     +  +  +   +                     +     +AG+  
Sbjct: 266 DTKSGYARHLPLNDGAMAVLHQMQGVSRSQYIFGNPKTGKPYVHIYYAWDTARRRAGLPD 325

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              H +R   A++  + G + +E+    G   +   + Y        L   N 
Sbjct: 326 VRMHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
 gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685]
          Length = 303

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 21/283 (7%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
           TL   +S + +       L+  +  ++      II      G  D+  + +  +R+ V  
Sbjct: 7   TLNAPVSAFLQMLRVERQLSPRTVDTYRRQLAAIIALLQESGVTDWLALDSARVRALVAR 66

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +     P+S    L+++R    W V    +A NP   V  P++     +    +D+ + 
Sbjct: 67  SRRQGLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLDVDDVNRL 126

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
            +     +   + R   E +   GLR S+      +HL           K      + + 
Sbjct: 127 LAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERRLPIG 186

Query: 239 DGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              ++ +              +  FI++   +++       F     K GV  +   H +
Sbjct: 187 REAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSHIHPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 247 RHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288


>gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1]
 gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1]
          Length = 295

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 93/297 (31%), Gaps = 31/297 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
                 +          A N+  ++    D      GD    K +   +           
Sbjct: 2   SAATRAFLDMLAAERGAAANTLAAYRRDLDGAEEALGD--LDKASRAAVAKLSAQWASLA 59

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           PS+  +  +++R  F +AV + +   +P  ++ +P+ +    +  + E ++         
Sbjct: 60  PSTVARKASALRQFFGFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVETLLQRAELE 119

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
                    +     E L  SGLR ++     +  +  +        K G    V + + 
Sbjct: 120 ANSGQPTALRQLALLEMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQARMVPVSER 179

Query: 241 FMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVN---KSAHGVRK 291
             + LA     + +                +  +     K  A +A ++    S H +R 
Sbjct: 180 AKEALAEWVKVRPSDPPTGHLFPSRGGKHLSRVRLFQILKELAVRADLDPAGISPHVLRH 239

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             AT   + GA    L    G   +   + YT           ++ R+  +V+S  P
Sbjct: 240 AFATHLLEGGADLRVLQTLLGHADIATTQIYTHV---------DAARLVELVNSRHP 287


>gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 316

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 100/283 (35%), Gaps = 23/283 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKH 118
                ++  ++  Y +      + + ++  +++     ++    +      D +    + 
Sbjct: 2   ESNKESVANVVKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHPKDMQLKDLEL 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +      P+S  + L+ +R  +++ V    +  +P   +E P+         + E+
Sbjct: 62  FAGQLHEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEE 121

Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           +   ++       EG + +   E L   GLR S+     + +L      ++    G+   
Sbjct: 122 VDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKER 181

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      ++       L+ +    ++  F+N   + +  T   I  K +A  AG+ 
Sbjct: 182 LVPISSKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGIT 241

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K+   H +R   AT     GA    + A  G +++   E Y  
Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMH 284


>gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC
           BAA-895]
 gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 21/286 (7%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG 122
              +L   ++ + +       L+  + ++++   D II  +G+     +++     +R+ 
Sbjct: 2   TELSLSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRAF 61

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+
Sbjct: 62  AVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKNIDVDDI 121

Query: 180 QQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
            +            + R   E +  +GLR S+     ++HL  +        K      +
Sbjct: 122 NRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRL 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSA 286
            +    +  +      +  F  ++D        ++++A      F     K G+  +   
Sbjct: 182 PIGRNAVAWIEHWLDLRGLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
 gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108]
          Length = 299

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTH-VSKERL 288


>gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT]
 gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT]
          Length = 277

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 23/266 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
           A N+  S+                R +     + I+  +  R  +  P S  + + S+R 
Sbjct: 2   AKNTLTSYRQDLAAFAAWLQQTRRRAMLEAGPEDIQGFIAFRFPQSQPRSISRLVASLRR 61

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
            +++A+R+ Y++ +P + +E PK      +  +++++++  +      + G + R   E 
Sbjct: 62  FYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTNLGLRDRAMLET 121

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------- 248
           L  +GLR S+     V  L      ++          V L +  ++ LA           
Sbjct: 122 LYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRLVPLGEQAVEWLARYLQEGRPSIL 181

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
                +  F+    + M    F    K  A  AG+    S H +R   AT   + GA   
Sbjct: 182 QQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAFATHLLNHGADLR 241

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G   +   + YT  A R RL
Sbjct: 242 VVQMLLGHADISTTQIYTHVA-RERL 266


>gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRK 127
             LI++Y  +      L+ ++  ++    D++ + +       +T   +R   +   +  
Sbjct: 3   ADLIADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L++ R  ++W  +   +  NP  ++  PKR     +  + +D        +
Sbjct: 63  LSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPA 122

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231
            G+    +     E    SGLR ++     V +++   +  +                  
Sbjct: 123 SGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVRGKGDK 182

Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    +  L                  F++    +M+        K  A  AG+ 
Sbjct: 183 ERKVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIP 242

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 243 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
 gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3]
          Length = 297

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVE 124
           + L+ +Y         LA NS  ++ S     +      +  +++   +         + 
Sbjct: 5   ERLVDQYMSYLLIEKGLAENSLEAYGSDLAAYLDYLKAQNIDRVSETDMPVLLKYLIFLR 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R     S  + L ++R  +++  +++ +A +P  +++ PK+        + +++++  +
Sbjct: 65  DRGLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLSVDEVKKLLA 124

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                   G +     E +  +GLR S+     VQ +   +  ++    G     V +  
Sbjct: 125 APDTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKGAKERVVPMGA 184

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              + L                    F+    + M    F    K     AG+ KS   H
Sbjct: 185 YAKEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLAAGIRKSIKPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   A+   + GA    +    G   +   + YT    R
Sbjct: 245 TLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYR 285


>gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067]
          Length = 300

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
            + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + ++
Sbjct: 7   WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227
              E       + R+  E L  +G+R S+     +  +                  +   
Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGNKERYVPFG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                   +  D  ++L+       ++  IN+  + +             +KA +     
Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
 gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois]
          Length = 301

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 98/296 (33%), Gaps = 30/296 (10%)

Query: 74  LISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
            + ++  K     +  +N+  S+ +    +         +  + + +   +   +    +
Sbjct: 8   YVEQFLEKILVERNATLNTISSYRTDLRLLGAFLKKKGLKDASKEDLYGYIADLRAQQLS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  +   + R  F +   ++  + NP  ++E PK+     R  TKE++    +F   G
Sbjct: 68  NATIRRKTATFRQFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLLTFLETG 127

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGF 241
                +     E L  SG+R S+     +  ++         I   K      +      
Sbjct: 128 QPATLRLYAILEILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGRKERILPFSKKA 187

Query: 242 MKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
           +++L +     ++             + M+  +     K  A K  ++    S H +R  
Sbjct: 188 IQVLKLYLTSYQSNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCSIDPKRISPHVIRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   D G     +    G   +   + YT  +           ++   +++  P
Sbjct: 248 FATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQ---------NKLHKEIEAKHP 294


>gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 376

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 103/332 (31%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +        +     +I  Q+T                    I     +   +LL
Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRIIPMTEELMGELL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 KE  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 EYQSHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349


>gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
 gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453]
          Length = 290

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 19/276 (6%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
            LI +  +       LA N+  ++     ++ ++         T   +            
Sbjct: 3   ELIDKLLEHLWLQERLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASAIYVSDEQ 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185
           P S  + L++ + L+ W V       +P   ++  K      +  T++ +          
Sbjct: 63  PRSQARSLSACKRLYAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIENLLNMPDCD 122

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244
              G + +   E +  +GLR +++ +  +  +  N        K      V L +  +  
Sbjct: 123 TPHGLRDKALLELMYATGLRVTEAVKLRMNEINLNHGLVNTIGKGDKQRIVPLGEEAVHW 182

Query: 245 LAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +                 +  F++  K  M      +  K  A   G+   S H +R   
Sbjct: 183 IGQYVQFSRPQLLKGRRCDELFVSQKKSGMTRQLAWLIVKQYADLVGIKSLSPHSLRHAF 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    +    G   +   + YT  A+  
Sbjct: 243 ATHLVNHGADLRTVQMLLGHADIATTQIYTHVANER 278


>gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68]
 gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68]
          Length = 301

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ 
Sbjct: 63  ADHRSSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                        + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 392

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 103/384 (26%), Gaps = 56/384 (14%)

Query: 15  RTRHGKI-----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + + G+      + Y  KG+ ++                 AL     + +          
Sbjct: 13  KRKDGRWCGFITVGYDEKGNQKKKFFYGKTRQEVAEKINQALN----EIKQGILITDNNI 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++ +        ++ ++   +ES     I      ++ + +  +H++     +  
Sbjct: 69  TLENWLNIWLHQYKKNQISESTFDDYESIIKNHINPVLEKYNLKDLRPEHLQMLYNEKHK 128

Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S  +       +      A++   +  N   +   PK   E        + Q+    
Sbjct: 129 AGLSTKRIKDIHVILHSALNQAIKNGLIVRNVSEATTLPKNTREKEMKVLTIEEQKRFLQ 188

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239
             EG + + AF   L +G+R  +      Q +      I  + +   I            
Sbjct: 189 VLEGERLKPAFVLALSTGMRLGEILALKWQDVDLENKRITIRNSVRRIKNRNEQSEIKTK 248

Query: 240 -----------------------------------GFMKLLAMTPIGKETFFINNDKQKM 264
                                                 +    + +     F       +
Sbjct: 249 TVLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPI 308

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               F   F     KAG+N + H +R   AT   +A      +    G   +      Y+
Sbjct: 309 EPRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYS 368

Query: 324 KGA-DRIRLGIKNSRRISSVVDSD 346
               D  +  I     +   + ++
Sbjct: 369 HVLFDTKQKAIGEINDLMKNLTNE 392


>gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103]
 gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103]
          Length = 301

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126
           L+  +  + +       L+  +  S+      ++  + +       ++    +RS     
Sbjct: 5   LQETVDGFLRHLKVERQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARS 64

Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +A      L+++R    W V ++ +A NP   +  P+      +    +D+ Q  
Sbjct: 65  RRAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLL 124

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +   GLR S+      +H+           K      V +  
Sbjct: 125 EIDLTDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGR 184

Query: 240 GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F   +          +++A      F     K G+  +   H +R
Sbjct: 185 TAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSSHIHPHKLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 HSFATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285


>gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 294

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 23/274 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130
           I  +         L+ N+  S+        +         R      +   +   K    
Sbjct: 5   IRTFLDHLRLERGLSENTATSYARDLADFSQYLAREQRTMRDADRTAVLRYLSDLKRRGM 64

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++  + ++++R  F++ +R+  +  +P  ++E         R  ++ED+++       
Sbjct: 65  KSTTIARRMSALRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRR 124

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E L  +G+R S+     ++ ++     I+          V L +    
Sbjct: 125 PDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQD 184

Query: 244 LLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            L +                  F+N   ++M    F    K  A +AGV    + H +R 
Sbjct: 185 ALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G   +   E YT  
Sbjct: 245 SFATHLLEGGADLRVVQELLGHADISTTERYTHV 278


>gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 300

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
            + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + ++
Sbjct: 7   WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYNQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227
              E       + R+  E L  +G+R S+     +  +                  +   
Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVPFG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                   +  D  ++L+       ++  IN+    +             +KA +     
Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
 gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6]
 gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF]
 gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071]
 gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636]
 gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679]
 gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317]
 gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039]
 gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162]
          Length = 301

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           T +     Y         +  ++ ++E         + +SGD D  K     +R  + + 
Sbjct: 5   TWEQKFLRYL--IVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSAL 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ +S  + + S+R  +++ +++E +  NP   V   K+     R + + +MQ 
Sbjct: 63  ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQA 122

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                        + R   E L  SG+R S+     V  +  +   +    K        
Sbjct: 123 LFDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAP 182

Query: 237 LPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           L       L                   +  F+N+  + +  T           K+ ++ 
Sbjct: 183 LGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + Y   
Sbjct: 243 DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285


>gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
 gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213]
          Length = 309

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES  ++ +      G      I  + +   + + 
Sbjct: 6   FGTLREQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAAL 65

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V+ +   SV+ PK  +      + +++ +  
Sbjct: 66  DADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRLL 125

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
              + G        + +   EF+  +G R S++    +  +      ++    G+     
Sbjct: 126 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLV 185

Query: 232 IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            +     +  +  L                 +   F+N   ++++        K    +A
Sbjct: 186 PLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGGRA 245

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 246 DITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 293


>gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 306

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 29/282 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121
           L  +I ++ +      S + N+  S+      +I        G+ +    + ++   +RS
Sbjct: 3   LGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRS 62

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR     +A    + L+ +R  FK+      +      S+ RP ++    +  +  +
Sbjct: 63  WLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPN 122

Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++                  +       L  +GLR S++    V  + N      T K  
Sbjct: 123 IKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINNESLI-VTGKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN- 283
               V +     K +                       K+  T  +   +       +  
Sbjct: 182 KQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPE 241

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT           +    G  +++  + YT 
Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 283


>gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
 gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114]
          Length = 293

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 102/278 (36%), Gaps = 19/278 (6%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
            ++  LI +  +S      L+ N+  S+     ++  +  +   D+       +   V +
Sbjct: 2   MSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYA 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +S  + L++ + ++ W       A NP   ++ PK + +     T+  +    + 
Sbjct: 62  EGEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAA 121

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TG 230
                  G + +   E +  +GLR +++ +  +  +  +  SI+T               
Sbjct: 122 PDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQE 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
               VE      + L +     +  F++  +  ++     +  K  A  AG+ + S HG+
Sbjct: 182 AAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   AT   + G     +    G   ++  + YT  A+
Sbjct: 242 RHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 279


>gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str.
           Madrid E]
 gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC
 gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii]
 gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22]
          Length = 305

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 97/284 (34%), Gaps = 28/284 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
             +++ LI +++K      + + N+ I++ +     +               I T  IR 
Sbjct: 3   DISIQELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +K+  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +D+                  + +     +  +GLR S++      HLQN  F     K
Sbjct: 123 VDDVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLHLQNLEFIKIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+  + F+          G
Sbjct: 183 GSKERIIPWLPLTKNLITKYLEILPYKLDENEPIFRGRQGKKLQPSVFNRELIKLKRIYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    +AH  R   A+   + GA    +    G K++   + YT
Sbjct: 243 LPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYT 286


>gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
 gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112]
 gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3]
 gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri MM4-1A]
          Length = 386

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 102/368 (27%), Gaps = 52/368 (14%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  Y F      G+R +       ++  A                       +  
Sbjct: 6   RKRGKKWYYRFDIADKDGKRRQYERVGGDSYKEAMHRLRVALELYENTGAVTNTDKISTH 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
                +  +    +L+ N+++++       +    G +   K+T + I+  +     +  
Sbjct: 66  DYFEFWYDNYVKTNLSKNTQLNYRHVLDKYVQPTLGIYQLSKVTPELIQKTINKIADSTE 125

Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPW 174
                      +    L  ++  F+ AV   ++                PK   E ++  
Sbjct: 126 YKPDHSRLHGHTVEIILMVIKEGFRQAVHPWHILTQSPAEYVRQPKYNHPKTTREDLKII 185

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           T +   Q    +  G    L      Y+G+R  +       ++      I   +      
Sbjct: 186 TLQQFNQLLEQFPLGHPFHLPLLISFYTGMRRGEVAGLEWDNVSLPDAEINVTQQMKQYS 245

Query: 233 ---------------ITVELPDGFMKLLA--------------MTPIGKETFFINNDKQK 263
                           T+ + D  +  L                            + + 
Sbjct: 246 KTDVRLGKLKTAASYRTIAIGDQLIHALKVQRRLQNENRLRYGKNYHESNFVCTKENGKP 305

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           +       +      + G   + H +R   AT+  +AGA+A E+    G   +    +TY
Sbjct: 306 VTPNSIKYYASTVTKELGFPFNFHSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTY 365

Query: 323 TKGADRIR 330
              +++ +
Sbjct: 366 VHLSNKKK 373


>gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD
 gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD
 gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129
             EY  S     L+ NS  S+    ++             K+    I   +     RK +
Sbjct: 12  FQEYL-SVE-KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRKIS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + + ++R  +K+   ++ +  NP   +E P+         T++++++  +   E 
Sbjct: 70  SKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKED 129

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + +  FE L  SGLR S++C           +      K G    V   +  + +
Sbjct: 130 NLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSLDI 189

Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           L         F + +              +N             +  +    + H +R  
Sbjct: 190 LNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILKKVTPHTLRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +  A    +    G   +   + YT  A++
Sbjct: 250 FATHLLENHADLKSVQELLGHIDIATTQIYTHMANK 285


>gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144]
          Length = 296

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q          +  T      ++  + + S +   ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M    Q  +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
             + N            +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHANLSTTGRYTHVSNQQ 280


>gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
 gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           L   +     +  + +  +   + S   ++        GD     I  + +R  + S   
Sbjct: 3   LTDSFLDYLLYERNYSEGTVKYYRSDILELQDFGKEMLGDLTPSDIDAELVREWIASLMD 62

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + L+S+R  +K+ +R+  VA++P   +  PK+K        + +M +    
Sbjct: 63  RGCASSTINRKLSSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLLDD 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                  EG +  L  E    +G+R S+      + +  +      T K      +   +
Sbjct: 123 TDFGEGFEGCRNHLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQRLIPFDE 182

Query: 240 GFMKLLAMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
                +      +             + N  +      A   K  +        +S H +
Sbjct: 183 ELKFSMQEYVNVRNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 323

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  + W +R    + +P   
Sbjct: 59  RDGAGGGLLGIDRAALFDYLRWRAQATYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRQARPLLAANKPVAAVDGQVPLFIDA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++   F    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARQALSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 307

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 90/270 (33%), Gaps = 29/270 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY----RKITT-KHIRSGVESRKHTPSSAIQFLTS 139
            S++ N+ +++      +               +T  K++   +     +  S  + ++ 
Sbjct: 20  KSMSENTVVAYIRDLHTLSEYLDGIGIDYRQATLTNLKNLIVELTDLGISGRSRARMISG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----------SE 188
           ++  +++ +    +  +P   +E+P+         + E++ +                + 
Sbjct: 80  IKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRIIVTIDLSEVDKYTKLNI 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTIITVEL 237
           G +     E L  SG+R S+   A +  +  +   I                  I  +  
Sbjct: 140 GHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGNKERLVPLSDPAIRAINN 199

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                ++L   P  ++  F+N    +M      +  K    KAG+ K+   H  R   AT
Sbjct: 200 WFLARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIKNMVEKAGITKTVSPHTFRHSFAT 259

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
              + GA    +    G  ++   E YT  
Sbjct: 260 HLLENGANLRAIQQLLGHASITTTEIYTHV 289


>gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 324

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 96/294 (32%), Gaps = 35/294 (11%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
           +  TT+   +   + K      L+ ++  S+    + + R +         +T   +   
Sbjct: 22  EDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R    ++P S  + L+ +R  F +AV   +   NP   +  P       +  T+  +
Sbjct: 78  LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +   +       EG + R   E +  +GLR S+     V  L      ++    G     
Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERL 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277
           V L +     L             +                      +  QF  W K  A
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AG+     S H +R   AT   + GA    L    G +++   + YT  A +
Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073]
 gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073]
          Length = 390

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 113/377 (29%), Gaps = 49/377 (12%)

Query: 14  ERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +   G+       G       RR+ L    +   +     AL       +         
Sbjct: 13  YQRPDGRWTAQITVGIDHEGKQRRLTLYGKSKKEVLEKLTQALYQQ----QNGGFIEPSK 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126
            T++  ++ +        L  ++  S+E+     +I   G    +K+    I+    S+ 
Sbjct: 69  ITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKL 128

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +P+        +      A     +  NP  + + P+   + ++P   E +++F  
Sbjct: 129 ESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLE 188

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
              +      AF   L +GLR  +      Q L      ++ +++               
Sbjct: 189 TAKQDP-LYPAFLLALGTGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKT 247

Query: 233 ------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                   +    +L       +  F   + +  +   F+ +F 
Sbjct: 248 EKSRRQIPLPPSVVAALKRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFN 307

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332
               KAG+     H +R   AT+    G     +    G  TV    + Y+       L 
Sbjct: 308 RLLDKAGLPHIRLHDLRHTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHILPG--LQ 365

Query: 333 IKNSRRISSVV-DSDDP 348
            K + RI  ++   ++P
Sbjct: 366 EKAAERIDGLLQPKENP 382


>gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
 gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829]
          Length = 319

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 42/298 (14%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVE 124
            T   +  EY          +V++  S++      +      D      IT + + + + 
Sbjct: 2   DTFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIA 61

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  + S+  + ++S++   K+ V ++    +P  +++ PK+        T++ +  
Sbjct: 62  HLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIH 121

Query: 182 FKSFWSEGS----------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                 +                        + +   E L   GLR S+ C      +  
Sbjct: 122 LLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLV 181

Query: 220 NIFSIKTQKT-GTII-----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           +   ++                           +  LLA +P   +  F++    +++  
Sbjct: 182 SDELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQ 241

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 +   +  G+     H +R   AT   + G     +    G  ++   + YT 
Sbjct: 242 AVFSLVERYGSYVGIKGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299


>gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
 gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 96/312 (30%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLAQQLPPLQAADASA-----IERFLDRFWAE---NGVARQTLDSYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +             +++P S  + L+++R  +   +R+   + +P   
Sbjct: 59  RDGAGGGLLGVDRAAVFDYLRWRSEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P       +  T+  ++   +        G + R   E +  +GLR S+        
Sbjct: 119 IDPPHLPRSLPKALTESQIEALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------- 261
           +      ++          V L +     L            ++                
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLHEARPLLASHKPVASVDGQVPLFVDA 238

Query: 262 --QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             Q  +  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARQPPSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 276

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 85/265 (32%), Gaps = 13/265 (4%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTPS 131
             +        L+  +   +     Q         G+     I      + +E +   P 
Sbjct: 7   QAFFNDHQAR-LSPETIRGYRIALTQFFTFCVKGFGEVKATDIRAW--LASLEEKGLKPR 63

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    L +++  + + + +  V  NP L+V  PK         ++ ++   +       +
Sbjct: 64  SIHAKLAALKSFYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRREVALLQELTRHDPR 123

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK----LL 245
            R   E L  +G+R S+  +  ++ ++       I+  K      V      ++     L
Sbjct: 124 NRAIVETLYTTGVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFVLFSYDCLERLNTYL 183

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A         F N   + ++       F+A + + G     H +R   A   A+      
Sbjct: 184 AHRKRESAYLFSNYWGKPLSHVFVEQQFQAFSEELGFRVRPHTLRHTFAAHLAEKNMPQS 243

Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330
            +    G   ++    YT+  +  R
Sbjct: 244 YIQELLGHVNINSTRIYTRLMEHAR 268


>gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
 gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis
           L2-32]
          Length = 308

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 92/286 (32%), Gaps = 36/286 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--RKHT 129
              Y K+     L+ N+R ++ S  ++ +      G  D  ++T + +R  +    + H 
Sbjct: 10  FDAYLKAN--RGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS  +   ++R  F WA   +  + NP  S++ PK          +   QQ      E 
Sbjct: 68  RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 127

Query: 190 -----------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231
                             +     E L  +G+R ++     V  +   N     T K   
Sbjct: 128 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 187

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG 281
              +       K L             +             ++           +A KAG
Sbjct: 188 QRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAG 247

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           V   S H +R  +AT   D GA   E+    G  ++   + YT  +
Sbjct: 248 VPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 293


>gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
 gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1]
          Length = 300

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 98/294 (33%), Gaps = 27/294 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKI--TTKHIRSGVESR 126
           L  L+ ++R         + ++  ++        +   G      +  T   IR  + + 
Sbjct: 4   LSPLLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGTHAAIRGYLGTL 63

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              H P+S  + L S++  +K+ VRQ+ ++ +P   V+ PK      +    +++     
Sbjct: 64  SVDHAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILE 123

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                   G + R   E L   GLR S+ C   +  +  +   ++    G       + +
Sbjct: 124 MPSLKTVLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVNE 183

Query: 240 GFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
             ++ L                    E  F+N    ++     +        K  +    
Sbjct: 184 PSIRALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALTRKV 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
           S H +R   AT     GA    +    G  ++   + YT    ++++     + 
Sbjct: 244 SPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAH 297


>gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 329

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 36/286 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--RKHT 129
              Y K+     L+ N+R ++ S  ++ +      G  D  ++T + +R  +    + H 
Sbjct: 31  FDAYLKAN--RGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHA 88

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS  +   ++R  F WA   +  + NP  S++ PK          +   QQ      E 
Sbjct: 89  RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 148

Query: 190 -----------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231
                             +     E L  +G+R ++     V  +   N     T K   
Sbjct: 149 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 208

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG 281
              +       K L             +             +++          +A +AG
Sbjct: 209 QRVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAG 268

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           V   S H +R  +AT   D GA   E+    G  ++   + YT  +
Sbjct: 269 VPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 314


>gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
 gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC
 gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 24/286 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ ++   ++    +     G   +  +T   +R   + +  +  +  +  + L+++R
Sbjct: 23  RRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLAASLHRQGKSGKTIQRMLSTLR 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAF 196
             F++ +R+     NP + +  PK      +    + +       +  S     + +   
Sbjct: 83  TFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTSNSEPLALRDQAIM 142

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E L   GLR ++     +  +  +   +  T K      + +    +  +      +   
Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPALTAVRRWLQVRPML 202

Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
                    FI+ + ++++ +      K  A + G++     H +R   AT   ++    
Sbjct: 203 IKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLRHSFATHLLESSGDL 262

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
             +    G   +   + YT   D   L         R     D D+
Sbjct: 263 RAVQELLGHADLATTQVYTH-LDFQHLAQVYDGAHPRAQRRKDDDE 307


>gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 300

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
            + L  +Y  S    + + N+  ++E+      R   +    +      +  +   + ++
Sbjct: 7   WEQLFLDYLHSE--RNYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQ 227
              E       + R+  E L  +G+R S+     +  +                  +   
Sbjct: 125 VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVPFG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                   +  D  ++L+       ++  IN+  + +             +KA +     
Sbjct: 185 AYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP
           32953]
 gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+]
          Length = 303

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+      ++    + G   ++ +    +RS V   K T 
Sbjct: 12  VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRTG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   V  P+      +    +++ +  S   
Sbjct: 72  LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEINKLLSIDL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+   +       K      V L    + 
Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F+ N  ++++A      F     K GV  +   H +R   A
Sbjct: 192 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705]
 gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD
 gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705]
          Length = 308

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 5   FTRLTEQFLIHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++  A +  +  +    +   K      V
Sbjct: 125 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 185 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292


>gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 305

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 79/283 (27%), Gaps = 26/283 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT--KHIRSGVE 124
               I  + +        + N+  ++              G               +   
Sbjct: 5   FDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEGRSVAAYIARQA 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+ ++  + +A  +     +P  +++ P+      +   KE++     
Sbjct: 65  EIGMAARTQARRLSCLKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALLD 124

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
                   +G       E L  +GLR S+     +  +  +    +   K      V L 
Sbjct: 125 AARALEGRDGILMTALMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKGSKERMVPLS 184

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---K 284
           D     L      +ET    +   +              + F+      A  AG++    
Sbjct: 185 DPARAALIAWKAERETMVPKSRPSRWLFPSSGRLGHLTRSGFAKMLARAAVLAGLDPFKV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S H +R   A+     GA    +    G   +   E YT   D
Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLID 287


>gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 313

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 30/295 (10%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           PT  + ++  Y++       L+ ++  ++        + + K  D     +    IR   
Sbjct: 11  PTQFEQILERYQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPATSLPEIDIRDMR 70

Query: 124 ESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                     H+ +S  +   S+R   +W  +  Y A +P   ++ PK   E     T E
Sbjct: 71  LWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKVSNELPHVLTVE 130

Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             ++      E +        +     E L  + +R S+     V  +  +       K 
Sbjct: 131 QARELLRVAKERTADGNALAIRDAAIVELLYATAIRVSELTGTDVSDVSPSSNLRVIGKG 190

Query: 230 GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                V         L                ++  F+    ++++              
Sbjct: 191 DKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDPRTVRTLLTQLTKA 250

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           AG+   + H +R  +AT   D G+    +    G  ++   + YT   A+R+R  
Sbjct: 251 AGLPDITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAA 305


>gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--------RKITTKHI 119
            T    + +Y+        L++NS  S+    +++++     D           IT   +
Sbjct: 1   MTWLQTLKDYQHYLKIERGLSLNSIKSYSYDVEKLMKFLEKNDLKTSPLKIDANITKAFV 60

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +       S  + ++ ++  F + V ++Y   NP   +E P+   +     + E++
Sbjct: 61  YDVAKHMNE--RSQARLISGLKSFFNYLVFEDYRETNPVDLIESPRIGRKLPDTLSLEEI 118

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT 234
               +       EG + R   + L   GLR S+     +  L     F   T K      
Sbjct: 119 DNLIAHIDLSKPEGERNRAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKVTGKGNKQRF 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN 283
           V + +   KL+++               +                     K  + K G+ 
Sbjct: 179 VPIAEHTQKLISIYKTEIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVKNLSEKCGLQ 238

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K+   H  R   AT   + GA    +    G +++   E Y    D+  L
Sbjct: 239 KTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMH-LDQTHL 287


>gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 373

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%)

Query: 17  RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G          R  +G+R +       T   A   AL     K E          TL+
Sbjct: 7   KRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             I+E+ K       A  + +S +S   + II   G  + +K+    I+    S K    
Sbjct: 66  QFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKEKQL 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++       +  + K+AV+ +Y+A NPC  VE PK+  +    W  E +++      +
Sbjct: 126 SNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241
            +   +     LY+GLR  + C    + +     +I  ++T   I               
Sbjct: 185 DTPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276
                    +++L      +    +   ++ +                     +  F+  
Sbjct: 245 GIISIPDFLVQILKQEKNKQLQNKLIFGEKYITEYEGFISVWEDGRFKEPDYVTKKFRKI 304

Query: 277 ATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333
             K + +     H +R   AT+   +G     +        +      Y+     + +  
Sbjct: 305 LKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHV--DLEMDR 362

Query: 334 KNSRRISSVV 343
           +  R++ S +
Sbjct: 363 EALRKLESNL 372


>gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15]
          Length = 327

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 98/343 (28%), Gaps = 32/343 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            +   G+     R       R+            + + +     +    N  +    TLK
Sbjct: 3   RKLPSGRWQVDLRTDGRGSKRIRKSFDSKAEAKRFETFVMAKRAEGREWNPSKADNRTLK 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
            LI  +  +     L        +   D +    G+   R +      +    +    + 
Sbjct: 63  QLIKLWFNAKGVH-LKDG--ERRKRCLDTMAEFLGNPIARTVKPTSFLAYRAHKIQKGAS 119

Query: 132 --SAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +    L  +  ++    R   +   NP  +VE  +     +   T E ++        
Sbjct: 120 KKTLNNHLGYLNAVYNQLNRLNEIDFDNPIRNVEMIRLDERELSWLTVEQIRHLLKTIED 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +S+     L     L +G R  ++    ++H+Q    +    K+G   +V +     + +
Sbjct: 180 FSQNPHVHLLTRICLATGARWGEAENLQLRHVQEGKLTFVNTKSGKSRSVPVSKELFEEI 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAG 301
                    F  +              F+    K+G+        H +R   A+     G
Sbjct: 240 RKHLKEHGCFSFSLS-----------AFRRALDKSGITLPPGQAAHVLRHTFASHFLMNG 288

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                L    G   +     Y+       L  ++  + +++  
Sbjct: 289 GDIVTLQKILGHSHISMTLRYSH------LAPEHLSKAATLGP 325


>gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083]
 gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083]
          Length = 306

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  + ++       + N+  ++ +     I           G     +ITT+ +R+ 
Sbjct: 9   RDALEHWLETQKSLKGGSENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAW 68

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +    +  S  + L+S++  ++W   +E       L++  PK + +  RP      
Sbjct: 69  MAQTRGDEVSARSLARKLSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAA 128

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               E ++   +     ++       L   GLR S++       +          K G  
Sbjct: 129 KAMIETVEYQTAHTWVAARDSAVLTLLYGCGLRISEALGLTGADVPLPTALRILGKGGKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + +             N            N             + G+  +
Sbjct: 189 RVVPVLPAAREAVQAYLNICPYPLEPNAPLFRGIRGGALNPRAVQSVMAKARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT   D  RL 
Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYT-AVDTARLM 296


>gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 373

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%)

Query: 17  RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G          R  +G+R +       T   A   AL     K E          TL+
Sbjct: 7   KRGSTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             I+E+ K       A  + +S +S   + II   G  + +K+    I+    S K    
Sbjct: 66  QFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLGHIELQKLKPVEIQKFYNSLKEKQL 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++       +  + K+AV+ +Y+A NPC  VE PK+  +    W  E +++      +
Sbjct: 126 SNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241
            +   +     LY+GLR  + C    + +     +I  ++T   I               
Sbjct: 185 DTPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276
                    +++L      +    +   ++ +                     +  F+  
Sbjct: 245 GIISIPDFLVQILKQEKNKQLQNKLIFGEKYVTEYEGFISVWEDGRFKEPDYVTKKFRKI 304

Query: 277 ATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333
             K + +     H +R   AT+   +G     +        +      Y+     + +  
Sbjct: 305 LKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHV--DLEMDR 362

Query: 334 KNSRRISSVV 343
           +  R++ S +
Sbjct: 363 EALRKLESNL 372


>gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 299

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 90/262 (34%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            +L+ NS  ++ S  +++++       D   +    ++            P S  + ++ 
Sbjct: 18  KALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVELSDLQKMFTTLCEMGIHPRSQARIISG 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           ++  + +   ++ +  NP   +E PK   +     T  ++    +        G + R  
Sbjct: 78  IKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIATIDLSKPNGQRNRAI 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
            E L   GLR S+  +        +   +K          V + +  +K + +       
Sbjct: 138 IETLYSCGLRISELVKLSFSDFFPDEGFLKINGKGNKQRIVPISNSAIKEIQLYLIDRQR 197

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  +   F+N    +++        K    +AG+ K  S H  R   AT   + GA
Sbjct: 198 SSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPHTFRHSFATHLLEGGA 257

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               + A  G + +   E YT 
Sbjct: 258 NLRAIQAMLGHENITTTEIYTH 279


>gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 87/268 (32%), Gaps = 24/268 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPS 131
           Y +       + N+ IS++   +Q+     +    ++              +E      +
Sbjct: 11  YLRDV--RQTSKNTEISYQRDLNQLAAFLAEKGITEVEKVTRTSLNSYILYLEKEGKATT 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           +  + L S++  F +  R+  +  +P   ++ PK + +     +  ++          S 
Sbjct: 69  TISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNEVNSLLDQPGTSSP 128

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              + +   E L  +G+R S+     +  L   I  I  +       V       + +++
Sbjct: 129 KEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCRDGLKERMVPFGKTASQAMSI 188

Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                             F N   + M+   F    K    KAG+  + + H +R   A 
Sbjct: 189 YLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAA 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
                GA  H + A  G      A+ Y 
Sbjct: 249 HLIRGGADVHAVQAMLGHSDSTTAQMYA 276


>gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum
           DJO10A]
 gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 311

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 8   FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 67

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++  A +  +  +    +   K      V
Sbjct: 128 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 187

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 188 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 247

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 248 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 295


>gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 88/285 (30%), Gaps = 28/285 (9%)

Query: 69  TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TL+ +I+ Y +  +    L   +  ++     Q   +    +  +IT K +   +    
Sbjct: 2   DTLETVINNYLEYCNSQKCLDEKTLKAYRIDLRQFSEQISIINITEITPKILEQYIVRLH 61

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQ 181
             + P +  + + S++ LF +   ++ +  NP     +    P    + I   T E    
Sbjct: 62  EQYKPKTVKRKIASVKALFHYLEYKDILDHNPFNKILIHFRDPVILPKTIPLHTVETFLS 121

Query: 182 FKSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--T 229
                 +            +     E L  +G+R S+ C   +  +     +I       
Sbjct: 122 TIYKQRKNAKTSYQKRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYGKGD 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV 282
                    +  + +L       +T     +   +       +            + A +
Sbjct: 182 KERRIQIGNEAVINILTEYNDAFDTERQACNNFFINQSGKALSDQSVRRMINKYTSLASI 241

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           ++  + H  R   AT   +A      +    G  +++  E YT  
Sbjct: 242 DQHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286


>gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa
           Temecula1]
 gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC
 gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC
 gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1]
 gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23]
 gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 294

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 92/269 (34%), Gaps = 18/269 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129
           L+ ++    H    ++ ++  ++      +I   G     +   +    +++ V +    
Sbjct: 4   LVEDFFAFLHVERGMSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRR 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFK 183
             SA    + L++ R  + W V++ ++A+NP   +  PK   +  R    ++     Q  
Sbjct: 64  GLSAKSLQRRLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIP 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           +    G + R   E    SGLR S+ C      L  +        K      V +    +
Sbjct: 124 TDTPLGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYAL 183

Query: 243 KLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
             L           ++  F       ++A    +  K  A + G+  +   H +R   A+
Sbjct: 184 SALREWCASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 244 HLLESSGDLRGVQELLGHADITTTQIYTH 272


>gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 298

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES- 125
            +  I ++++      SLA NS  ++    +++ + +      D   I T+ IR  +E  
Sbjct: 3   WESAIKDFKQYLRLERSLAKNSIEAYLHDVEKLRQHALYSHKKDPNAILTQDIRDFLEWI 62

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  S  + L+ ++  + +   +  +  NP   +E P+   +     +  ++    
Sbjct: 63  YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                   EG + +   E L   GLR S+     + +L   I  I+          + + 
Sbjct: 123 GAIDLSTPEGLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKERLIPIG 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKS-- 285
              +K L +                           ++     +  K  A K G+ K+  
Sbjct: 183 HSAIKHLQIYLQHTRKEGPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIKVGLKKTIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G +++   E YT 
Sbjct: 243 PHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTH 281


>gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
 gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586]
          Length = 302

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
              + +       L+  ++ S+      II      G  D+  +    +R+ V   K   
Sbjct: 11  ADAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSASGVTDWSSLDAAGVRAVVARSKRDG 70

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  Q L+++R    W V +  +  NP   V  PK      +    ++M +      
Sbjct: 71  LNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDIDL 130

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR ++       H+   +       K      + +    + 
Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLPVGATAVT 190

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      ++ +   +D        ++++       F     K GV  +   H +R   A
Sbjct: 191 WLTHWLAIRDIYAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 332

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 13/260 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQ 135
           Y +     + +  +  ++                  I+   IR  +        PS+   
Sbjct: 61  YLQVKKLENYSKATLNNYMYTLRNFSNFI-VKPVSNISKNDIRYFMAINYENLKPSTVNN 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L  ++  F+W  ++E +  NP   ++  +         T E++++ +    +  + R  
Sbjct: 120 KLACIKAFFEWLEQEEIIPKNPARYLQGTRLPKHLRHSLTIEELEKIRLSC-KDVRERAL 178

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254
            EFL  +G R S+  +A +  L  +   ++         TV   D     +      ++ 
Sbjct: 179 IEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIKNYIDTRKD 238

Query: 255 FFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
                        +++      +       +A + KS   H +R   AT+   +GA    
Sbjct: 239 ENEALFIASKFPYKRIGKRGLELIISRIGERADIGKSVYPHLLRHTMATLGLQSGADITT 298

Query: 307 LMATYGWKTVDQAETYTKGA 326
           +    G  T    + Y + +
Sbjct: 299 IQHLLGHTTPSTTQIYAETS 318


>gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
 gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36]
          Length = 315

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 82/290 (28%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  +++      +           G     +IT   +R+ 
Sbjct: 14  RDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAW 73

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +     P S  + L++++  ++W   +E       LS   PK   +  RP      
Sbjct: 74  MAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAA 133

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + ++         ++       L   GLR S++                  K G  
Sbjct: 134 QAMIDSVEMQSRHAWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             V +       +                 F       + A   S        + G+   
Sbjct: 194 RVVPVLPAARDAVDAYLRVCPFGKERDAPLFRAMRGGPLAARAISQVMADARMQLGLPAS 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   DAG     +    G  ++   + YT   D  RL  
Sbjct: 254 ATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302


>gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450]
          Length = 309

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 95/277 (34%), Gaps = 23/277 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++   + + +     G  D+ ++    +R             
Sbjct: 21  EYLRSE--KGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+++R  F + + +  +  NP   V  P++K    +    +++ Q      +  
Sbjct: 79  SSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     V+ +  +   I+          V       + +A
Sbjct: 139 LAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVPFAGMAEEWVA 198

Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                        +   F++    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLKVRGALANTDEPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             ++      +    G + +   + YT   D   L  
Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294


>gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 293

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++     Q+        G+F+  ++  + IR  +     
Sbjct: 2   LADSFLDYLRYERNYSEKTVLAYGEDISQLQEFVQEEIGEFNPLEVKPELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +      T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289
              + +      +          FF+  + +++         K   +K      +S H +
Sbjct: 182 ELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G  ++   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277


>gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC
 gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens]
          Length = 303

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 91/285 (31%), Gaps = 21/285 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
             +L+  +  + +       L+  +++S+        ++ ++ G  D+  +    +R   
Sbjct: 5   APSLQQPVDAFLRYLKVERQLSPLTQLSYSRQLTALMRLAQEIGVTDWTTLDAARVRMLA 64

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K      +S    L+S+R    W V Q  +  NP   +  P+      +    ++M 
Sbjct: 65  ARSKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMN 124

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVE 236
           Q            + R   E +  +GLR S+      +H+           K      + 
Sbjct: 125 QLLEIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAH 287
           +    +  L      ++ F   +D         +++       F     K GV  +   H
Sbjct: 185 IGRTAVTWLEHWLAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSHIHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 KLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
 gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476]
          Length = 309

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 25/290 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP- 130
           ++Y          +  +  S+ +  +  I   G+        IT   + +     +    
Sbjct: 16  NDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGY 75

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
             SS  + L++++   ++ V +     NP   V  PK         +  ++ +       
Sbjct: 76  ADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFK 135

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + + A E L   GLR S+     +  +      ++          V +     +
Sbjct: 136 DGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQR 195

Query: 244 LLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAG-VNKSAHGVRK 291
           +L               K            +++        +      G  +   H +R 
Sbjct: 196 VLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIGRPDLHPHTLRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             AT   + GA    +    G   +   + Y    DR  +  +       
Sbjct: 256 SFATHMLEGGADLRTIQEILGHSDISTTQIYVH-VDRSHIREEYLAAHPR 304


>gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
 gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684]
          Length = 299

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  IT   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E++++  
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELF 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                    G + +   E +  +G+R S+     +  +   + +I    K      +   
Sbjct: 123 EASDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                      F+N     + +            KA +    
Sbjct: 183 SYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D GA    +    G + +   + YT    + RL
Sbjct: 243 SPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTH-VSKERL 288


>gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
 gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306]
          Length = 322

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 35/313 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108
           A   ++  +     P  +  ++      +          + N+  ++     + +     
Sbjct: 3   AEAKASKSKIDHAEPAPELVSVAQ---GWLDHLAVEKGASKNTVSNYRRDLKRYVSWLTT 59

Query: 109 FD---YRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINP 157
            +     ++++ H+ S V   +           +S  + L   R L K+A+ +  + ++ 
Sbjct: 60  ANISTLSEVSSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDV 119

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSC 210
              V  P          + +++ +       G        + +   E L  +G R S+  
Sbjct: 120 AAEVAPPSPGKHLPDSLSIDEVTRLIDSVPAGEVATAVDIRDKALLEMLYGTGARVSELL 179

Query: 211 RAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262
              V  + ++      T K      V L       +    +                   
Sbjct: 180 DLAVDDVADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTL 239

Query: 263 --KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              ++        +    +AG++K  S H +R   AT     GA    +    G  +V  
Sbjct: 240 GKPLSRQSAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTT 299

Query: 319 AETYTKG-ADRIR 330
            + YT   AD +R
Sbjct: 300 TQIYTHVTADSLR 312


>gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 465

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 22/346 (6%)

Query: 7   LPPFVTKERTRHGKIIY-YFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKR 58
           L  F+ + R+  GK  +  +R GHG+  + ++    + +F  A  +A    +        
Sbjct: 116 LTGFILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDP 175

Query: 59  EYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                 +K+  TL+     +Y    +      + +  F    + ++   G+    +I   
Sbjct: 176 LAERQTKKQVPTLEEFAAEKYM--PYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQA 233

Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172
            +       K      ++  + +  +R +F  A + +      NP   V   +      R
Sbjct: 234 EVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVALFEANNGRER 293

Query: 173 PWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--K 228
             T+++  + K+    SE +Q +     LL  G R S+   +  +       S +    K
Sbjct: 294 YLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSK 353

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           +G    V L    +++LA  P        N    +   + F   +     KAG+     H
Sbjct: 354 SGKARYVPLSTAALEVLASIPRLSPYVVPNPKTLQPFVSVFRS-WDTARKKAGLPDVRMH 412

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   A+   ++G + +E+    G   +   + Y+  ++   L  
Sbjct: 413 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAA 458


>gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
 gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 33/299 (11%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
             + +        A N+  S+    D      G    R  T + + + +          S
Sbjct: 9   ESFLEMLAAERGAAHNTLDSYRRDLDDFAAFLGTTATRDATAEDVSAYLSDLAARGFAAS 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + L+++R  FK+   +     +P  ++  PK++    R  ++ ++ +          
Sbjct: 69  SQARRLSALRQYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRLIEAACFDAT 128

Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236
                        +     E L  +GLR S+         L++        K G    V 
Sbjct: 129 LEHETPGRALRAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRGKGGKERLVP 188

Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           L     + +                   F  + +        F+   K  A   G++   
Sbjct: 189 LSPRAQEAMRAYVARRNAEGAYKGSPWLFPSHGESGHFTRQAFARDLKDLARAVGLDAAK 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
            S H +R   A+     GA    +    G   +   + YT   D R+R  ++    ++ 
Sbjct: 249 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHPLAK 307


>gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4]
          Length = 285

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 14/280 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
           L+ ++  +R+S     L+  +   +  +  +     G  D  ++T   +   R  ++ + 
Sbjct: 3   LEEVLKAFRQSCLSRGLSPGTAEVYLGHVRRFFGWLGCADITEVTPFDVASYRRHLQEKG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++    L ++   F WA     V+ +P   V +        R   K ++ +F     
Sbjct: 63  RKPATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQ 122

Query: 188 EG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFM 242
           +    + R     LL++GLR S++    ++ +       F     K G    V L     
Sbjct: 123 KHGSPRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVRGKGGKYREVPLNVTVR 182

Query: 243 KLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
           ++L        P      F     + +        F   +  +GV  + H +R       
Sbjct: 183 RVLKEYLAELPPQEGGWLFPGKGGEYLTRFAVEKLFARLSRLSGVEVTPHRLRHTFCKWL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            DAG +  ++    G   ++    YT+ G + +   ++  
Sbjct: 243 IDAGESLDKVALLAGHSNLNTTARYTRPGVEDLERAVEKL 282


>gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 308

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 5   FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++  A +  +  +    +   K      V
Sbjct: 125 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 185 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292


>gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 322

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 34/287 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S   Q      + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
           H  SS  + + ++R  F W    EY++ NP   +  PK K        +   +       
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140

Query: 181 --------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
                     K+  + G +     E L  +G+R  +     +Q +  +      T K   
Sbjct: 141 SKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280
              V       K L+                    F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEAKSA 260

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            V   S H +R  +AT   + GA   E+    G  +++  + YT  +
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 297

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 99/299 (33%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
           L      +         + N+  ++    +Q I+  GD +   ++   I   R  ++S+K
Sbjct: 3   LSECCELFLSYIA--DKSPNTIKNYSVDLNQFIKIVGDKEVELVSKSDIAKFRMVLQSQK 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L ++  L+++ +  E V ++P     RPK         + E+++       
Sbjct: 61  KKSSTIARKLATLNSLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLL-KNI 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------ 229
           +  Q +     LL +GLR S+       ++     +                        
Sbjct: 120 DNLQDKAIVVLLLTTGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVV 179

Query: 230 ---GTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                   V +    +++L                   ++        K    K   +  
Sbjct: 180 GKGDKEREVPITGKPLQILVEYLKEVNHYIDSKTPIFPISYHTLWRKIKDIGKKIATSLH 239

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            H +R  +AT++  +GA    +    G  +      Y K   + +L +K ++ +S  +D
Sbjct: 240 PHKLRHTAATVALASGAELRVIQELLGHASPITTARYAK-VGQKQL-LKATKALSENID 296


>gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 311

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 8   FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 67

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 68  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++  A +  +  +    +   K      V
Sbjct: 128 DAAAAGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 187

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 188 PLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 247

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 248 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 295


>gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
 gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125
             +  + +       L+  +  +++   D +     ++G   +++     +RS       
Sbjct: 8   ACVDRFLRYLGVERQLSPITLTNYQRQLDALIVLADEAGLKSWQQCDAAQVRSFAVRSRR 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S    L+++R  F W V Q  +A NP   +  PK      +    +D+ +    
Sbjct: 68  AGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDI 127

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   + R   E +  +GLR S+     ++HL   +       K      + +    
Sbjct: 128 DLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 187

Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +  +      +  F  ++D        ++++A      F     K G+  +   H +R  
Sbjct: 188 VAWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   ++      +    G   +   + YT   D   L 
Sbjct: 248 FATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum
           STM815]
 gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815]
          Length = 315

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 26/290 (8%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVE 124
           ++       + +      LA N+  ++            +     +              
Sbjct: 26  SIDAFCDALWLEH----GLARNTLDAYRRDLRLFSEWLAERRDASLDAASEADLTAYSAA 81

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +SA + L+  R  + WAVR+   + +P L +   K+        T+  ++    
Sbjct: 82  RSADKSTSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEALLG 141

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                   G + R   E +  SGLR S+        +  N   ++          +   +
Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +                    F+    + M   QF    K  A  A V    S H
Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +R   AT   + GA    +    G   +   + YT  A      +  + 
Sbjct: 262 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAH 311


>gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           natto BEST195]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 91/283 (32%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
              L  EY +     + +  + +++    ++           G  +     T+   +   
Sbjct: 7   FVKLFVEYLQIE--KNNSQYTIVNYVDSIEEFETFLRVQGINGFEEAAYQDTRIFLTEAY 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ +  NP   V  PK++    +   +++     +
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + +   E L  +G+R S+ C   +  +   + ++    K      +    
Sbjct: 125 VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285
              + L +         +   K+               A            KA   ++  
Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASSTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287


>gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 87/283 (30%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124
              L  EY +     + +  + +++    ++                  +          
Sbjct: 7   FVKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQGINGFEKAVYQDTRIFLTEAY 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   +++     +
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + +   E L  +G+R S+ C   V  +   + ++    K      +    
Sbjct: 125 VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAG--VNKS 285
              + L +         +   K+               A            KA   ++  
Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287


>gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 93/301 (30%), Gaps = 28/301 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FD 110
           +    E +   R    T++      + +      LA N+  ++        +   +    
Sbjct: 2   TKAAPEVLAPARLSAETIQRFCDALWLED----GLARNTLDAYRRDLTLYAQWLAERGKA 57

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +     +     +R      SSA +  T  +  F+WA+R+  ++ +P   +   K+  
Sbjct: 58  IDQTEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPP 117

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  ++  ++   +     +    + R   E +  SGLR S+        +  N   +
Sbjct: 118 RIPKTLSEAQVEALIAAPDIDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 177

Query: 225 KTQKTG--TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
           +           V         L        T           F+      M    F   
Sbjct: 178 RVVSGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWHL 237

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A +A +    S H +R   AT   + GA    +    G   +   + YT  A R R
Sbjct: 238 IKRYALRADLHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RER 296

Query: 331 L 331
           L
Sbjct: 297 L 297


>gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
 gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB]
          Length = 295

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 83/281 (29%), Gaps = 23/281 (8%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
            +  +         L+ ++  ++     +++  +GD     +   H+R  V         
Sbjct: 3   AVDTWLAELSDQRRLSAHTVSNYRRDLQKLLAAAGDIPLASLQVHHLRRFVAQLHGQGLA 62

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S  + L++ R  F W   +  V  NPC  +  PK      +  + ++  +      + 
Sbjct: 63  GRSLARALSAWRGFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDETSRLLMPVDDD 122

Query: 190 S-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +    FE    SGLR ++      + L +     + +  G    + L     K 
Sbjct: 123 DPVQAARDLAMFELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKLRLVPVGSKA 182

Query: 245 LAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
                                 F+     +++          +A   G+      H +R 
Sbjct: 183 REALAAWAAVRNELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLPTHVHPHMLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A+    +      +    G  ++   + YT   D   L 
Sbjct: 243 SFASHVLQSSGDLRAVQEMLGHASIASTQVYTH-LDFQHLA 282


>gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
 gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826]
          Length = 289

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 95/296 (32%), Gaps = 31/296 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
           +I  + ++      LA  S  S+     ++  +         +   +++ +      +  
Sbjct: 2   VIERFCEAMWLEAGLAEASVASYRRDL-RLAERLCAKPLSDFSAADVQAVLAQLLDLQRK 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            SS  +   S+R  F W V +   A +P + +E  + +    R  ++ ++++  +     
Sbjct: 61  ASSLARMRVSLRRFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLLAAPDLA 120

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G +     E L   GLR S+     +  +      ++ +  G  + +         +
Sbjct: 121 TPAGLRDAAMLELLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVRLVPMGEQAAEM 180

Query: 246 AMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                 +              FI      MN   F       A   G+    S H +R  
Sbjct: 181 VERYCREARPLLLEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIRTAVSPHTLRHA 240

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   + GA    +    G   +   + YT  A+          R++ V  +  P
Sbjct: 241 FATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAE---------ARLAKVFAAHHP 287


>gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
 gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel]
          Length = 312

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 102/292 (34%), Gaps = 34/292 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VES 125
           +  ++E+  +      ++ N+  S+ S    + +     +    +++   ++     +  
Sbjct: 5   EKYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKNLPLIEVSRDDLKDYVRLMHK 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180
           R++  S+  + +++++ L+K+  +   +A +P LS++ P+      +       ++    
Sbjct: 65  REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDT 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G +       L  SG+R S+     +  ++  + +   + +   I  +    
Sbjct: 125 AALDSSPDGLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRE 184

Query: 241 FMKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            + LL                        I +  F        +   +     K  +  A
Sbjct: 185 RIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISA 244

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           GV+ +    H +R   AT   + G+    +    G  ++   + YT  A+  
Sbjct: 245 GVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296


>gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638]
 gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638]
          Length = 300

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS---GV 123
           L   ++ + +       L+  + ++++   D   Q+  + G   +       +R+     
Sbjct: 6   LSSFVARFLRYLGIERQLSPITLLNYQRQLDAIMQLAEEIGLKSWPLCDAATVRALVVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   +  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
           +         + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 NIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F    +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVAWIEHWLDLRGLFGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
 gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259]
          Length = 294

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 84/275 (30%), Gaps = 21/275 (7%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133
           Y +       L+ ++  ++    + + R +       +T+  IR  +   +      +S 
Sbjct: 7   YLQHLAAERRLSAHTLSAYARDLENLARLTDGKPLDTLTSHDIRGAIVKLRAGGLAAASV 66

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
            + L+S R  + +A R+     NPC  +  PK         + +   +            
Sbjct: 67  ARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDAPDGDEDLL 126

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++ R  FE    SGLR S+             G   +       +    G      +  
Sbjct: 127 ATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLVPVGRQAVAAITA 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                L +     E  F+     ++      +     A  +G+  +   H +R   AT  
Sbjct: 187 WLPLRLTLVRTPTEALFVGQRGARLTPRNVQLRLARWARASGLGQHVHPHMLRHAFATHV 246

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             +      +    G  ++   + YT   D   L 
Sbjct: 247 LQSSGDLRAVQEMLGHASISTTQVYTH-LDWQHLA 280


>gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12]
 gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12]
          Length = 324

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 96/294 (32%), Gaps = 35/294 (11%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
           K  TT+   +   + K      L+ ++  S+    + + R +         +T   +   
Sbjct: 22  KDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R    ++P S  + L+ +R  F +AV   +   NP   +  P       +  T+  +
Sbjct: 78  LTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +   +       EG + R   E +  +GLR S+     V  L      ++    G     
Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERL 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFSIWFKAKA 277
           V L +     L             +                      +  QF  W K  A
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AG+     S H +R   AT   + GA    L    G +++   + YT  A +
Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
 gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185]
          Length = 316

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 103/297 (34%), Gaps = 25/297 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SL+ N+  ++ +  D+++        +  ++    ++          
Sbjct: 16  IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFLTLEGINVLEVCLSDLQRFTAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P S  + L+ ++  F++ +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +  F     K      V +    +
Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV--NKSAHGV 289
             + +    +    +  + +             +        K  A  AG+  N S H  
Sbjct: 196 NEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGIIKNISPHTF 255

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21]
 gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21]
          Length = 292

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 93/291 (31%), Gaps = 27/291 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           I ++          A N+ +++    +Q     G+      T   +    +      P++
Sbjct: 4   IDDFLAMLAAERGAARNTLLAYGRDLNQAEELLGEK-LAGATPAQLAKLGQGWSSLAPAT 62

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185
             + ++++R  F + V +     +P  ++ RP  +    +  +   ++            
Sbjct: 63  LARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFGRAEDEAAS 122

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
              +  +     E L  SGLR S+     +  +  +      T K G    V +     +
Sbjct: 123 DRPQAVRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARLVPVSTRAKQ 182

Query: 244 LLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
            L+           +   +    +   +     K  A +A +     S H +R   AT  
Sbjct: 183 ALSRWLALRPTGSNYLFPSRSGHLTRIRLYQMLKELAVRADLPPEKLSPHVLRHAFATHL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            + GA    L    G   +   + YT           ++ R+  +V+   P
Sbjct: 243 LEGGADLRALQTLLGHADIATTQIYTHV---------DAARLVKLVNERHP 284


>gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 92/294 (31%), Gaps = 28/294 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
              I ++  +       A N+  ++    +  +   G       T   +     +     
Sbjct: 3   ARAIEDFLAALAVDRGAAANTLAAYRRDLEGAVGIVG--PLEDATRTDLARLGAAWADLA 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181
           P++  +  +++R  F +   +   + NP  ++  P ++    +               ++
Sbjct: 61  PATVARKASALRQFFGFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQVEALFAQAERE 120

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
            +       +     E L  SGLR S+     +  +  +   +     G     V L   
Sbjct: 121 AEEGDPAALRLLAMIELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGGKERLVPLGTR 180

Query: 241 FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
              +L+           +   +  + +   +     KA A ++G++    S H +R   A
Sbjct: 181 ARAVLSRWLAVRPEGSPWLFPSRGKHLTRIRLYQLLKALAERSGIDPAKISPHVLRHAFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    L    G   +   + YT              R+ ++V+   P
Sbjct: 241 THLLEGGADLRALQTLLGHADIATTQIYTHVES---------ARLVALVNERHP 285


>gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
 gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund]
          Length = 292

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 20/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT 129
           +  + +Y +      L+ N+  ++     +  +   + D   +      I + V++ K  
Sbjct: 2   EEYLRQYIEDMRKKELSKNTIEAYNRDIIKFGKFLKERDENILNADMVSIMAYVQTLKKE 61

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             +    I+ + S+R  +K+ +R      NP ++ E PK K       T +++++F    
Sbjct: 62  KKADSSIIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLTIDEVEKFLNAP 121

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241
                +G + +   E +  +G++ S+  R  +  +   +  +K +        + +    
Sbjct: 122 ECNEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSYA 181

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +  L      ++          F N    KM    F    K  A +AG+NK    + +R 
Sbjct: 182 VNCLNEYLNVRDKMSAANSEILFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A      GA    +    G  T+   + Y+  + + ++
Sbjct: 242 SFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281


>gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F]
 gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium
           MY3-11A]
          Length = 288

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 27/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
            + + ++  +++   ++        D   +    IR  V ++       SS ++ L++++
Sbjct: 5   KNASPHTLRAYKKDLEEFAAFV-KKDPASVDLYDIRGFVAAQSKQGLAKSSVMRRLSTVK 63

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197
             F +      V  NP   V  PK         +K+D               ++ +   E
Sbjct: 64  AFFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEKAEGIGFTAARNKAILE 123

Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
               SGLR S+   A ++ +           K      V +    +  L    + +    
Sbjct: 124 LFYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPIGSYALGALKTYLVERLLIK 183

Query: 257 INNDKQKMNA----------------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +  + +++                           A   GV      H +R   AT   
Sbjct: 184 EDTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGVEGAVGPHTLRHTFATHLL 243

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            +GA    +    G  ++   + YT 
Sbjct: 244 QSGADLRVIQELLGHASLSTTQKYTH 269


>gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           ++ + +       L+  + ++++   D   QI  + G   +++     +R  V     + 
Sbjct: 10  VNRFLRYLGVERQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKN 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P+S    L+++R  F W V Q  +  NP   +  PK      +    +D+ +      
Sbjct: 70  LSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + D        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFGADEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
 gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel]
          Length = 312

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 90/281 (32%), Gaps = 31/281 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGV 123
            I+++          + N+  ++E       +           G  D +++ +  +RS +
Sbjct: 9   AINDWLCWLRVERKCSPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELRSWL 68

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             R       SS  + +  +R  F++  R+  +  +   ++ RP  +    +   +  ++
Sbjct: 69  ADRFKQGKQSSSNARAVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEESQIR 128

Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +            ++       L   GLR S++       L  +       K      + 
Sbjct: 129 KVMGEREAPHWTHTRDLAVSALLYGCGLRISEAVNVKFCDLGQDGLR-VLGKGSKERVIP 187

Query: 237 LPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS 285
           +     + +           +++              +++ T F+   +    + G+ ++
Sbjct: 188 VLPWVRRAIDEYVANCPHLRVHSASGTEYIFVGLRGGRLSRTYFAHRMRKLRRRVGLPET 247

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT     GA    +    G  ++   + YT 
Sbjct: 248 TTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTH 288


>gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1]
          Length = 304

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
            + + N+R S+ +   +  I  +        IT +HI   +          SS  + +++
Sbjct: 23  RNFSANTRESYSNDLKRYLIFMQHRSRRLEMITKEHIEEFMGELYDIGLEASSIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQP 192
           +R   K+ V +  +  NP  ++ +PK+        T ++  +  +             + 
Sbjct: 83  IRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLLAAPQSVNPPGKYVLRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII----------TVELPDGF 241
           +   E L  +G+R S+      Q L  +   ++                    V      
Sbjct: 143 KAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKERLVPVGTSAIGWVTRYQAE 202

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +++  +     +  F+N    K++        +  A  AG+ K  S H  R   AT   +
Sbjct: 203 LRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIEKNISPHTFRHTFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G +++   + YT 
Sbjct: 263 GGADLRAVQEMLGHRSIVTTQIYTH 287


>gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
 gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum
           ATCC 6940]
          Length = 298

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 26/285 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L   +          + N+  ++     + +      G  D   +    +   ++  +
Sbjct: 4   EALAQTWLNHLAVEKGASANTLSNYRRDVRRYLGWLADNGIDDLADVDRGMVEEYLKFLR 63

Query: 128 HTPSSAIQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KED 178
              ++A      +  R L K+ V +  + ++    V  PK                  + 
Sbjct: 64  GGLAAASASRALIVARGLHKFGVAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLIDS 123

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237
           +   ++      + R   E L  +G R S+     V  + +N   +  T K      V +
Sbjct: 124 VPDGETATPIDIRDRALLEMLYGTGARISEVIALSVDDMSDNDGILVLTGKGNKQRMVPV 183

Query: 238 PDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                K +                   F+N     ++        K    +AG+NKS   
Sbjct: 184 GSQAQKAVEEYLVRARPVLSKGKSHALFLNTRGGALSRQSAWAALKLAVQRAGLNKSISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           H +R   AT   + GA    +    G  +V   + YT   AD +R
Sbjct: 244 HTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 288


>gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
 gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396]
          Length = 284

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 23/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
             L+ N+R+S+     ++            D  +       +    +    +S+ + L++
Sbjct: 6   QGLSENTRMSYRCDLLRLAEWLMGRGRTLVDASREDLFSFLAVRMQKGAKGASSARMLST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           +R  +++ +R+  V  +P L +E PK         ++ +++Q  +         ++ ++ 
Sbjct: 66  LRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEVEQLLAEPDASQPIEARDKVM 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254
            E L  SGLR S+     +  +      ++    G       L +  ++ L     G   
Sbjct: 126 LEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGEQAVEQLEAYIKGVRP 185

Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                      F +    +M    F    K  A+++G++K  + H +R   AT   + GA
Sbjct: 186 QLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPHTLRHAFATHLLNHGA 245

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +   + YT  A + RL
Sbjct: 246 DLRVVQLLLGHSDLSTTQIYTHVA-KARL 273


>gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC
 gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 328

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG 122
           T     + +         L+  +  ++    DQ            D    ++    IR  
Sbjct: 17  TWSEASARFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGY 76

Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +   T   +S  + L+++R  + +   +E V  NP   V  PK  T+       +D+ 
Sbjct: 77  LAALHKTRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVF 136

Query: 181 QFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229
                               +    FE +  +G+R S+        +  +   ++   K 
Sbjct: 137 HLLDSLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKG 196

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKAT 278
                V +    +  + +     ++ F    +            ++         + +  
Sbjct: 197 SKERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELR 256

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           + G+  + S HG+R   AT   ++GA    +    G   +   + YT    D++      
Sbjct: 257 RCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDA 316

Query: 336 SR 337
           + 
Sbjct: 317 AH 318


>gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK--- 127
           ++  Y +      + + N+  ++      +I      + D   +  + ++    S     
Sbjct: 11  ILKAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQLEDLQHFAASLHEFH 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
             P S  + L+ +R  F++ +   Y+  +P   +E P          + E++ + +    
Sbjct: 71  IGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEESID 130

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+     +  L  +   I+   K      V +    +
Sbjct: 131 LSKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRVLGKGSKERLVPISPRAI 190

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
           K L +    +             F+N     +  T   I  K +A +AG+ K+   H +R
Sbjct: 191 KELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPHTLR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT     GA    + A  G + +   E YT 
Sbjct: 251 HSFATALLQGGADLRAIQAMLGHEHIGTTEIYTH 284


>gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
 gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58]
          Length = 338

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 87/314 (27%), Gaps = 39/314 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS- 106
           +A      +       R   + L      + +       LA N+  ++    ++  R   
Sbjct: 6   AARGSGEAEARGSRGGRGAESALAAPFRRHLEHLAVERGLAANTLAAYRRDLERYRRWLE 65

Query: 107 --GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             G      +   H+   + +              SA + L ++R L ++   +     +
Sbjct: 66  AHGVRAPADVDPGHVSGFLRALGTGEDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPAD 125

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212
           P   V  PK      +    E +          +    + R   EFL  +G R S+    
Sbjct: 126 PARDVHPPKPGDRLPKALPVEQVTALLEAVPVDTPAGLRDRALLEFLYGTGARISEVVGL 185

Query: 213 GVQHLQNNIFSIKTQKTG---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ- 262
            V  +     +                    V +       L    +      +    + 
Sbjct: 186 DVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMTGVTRS 245

Query: 263 -----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
                      +++        K  A +AG+  + S H +R   AT     GA    +  
Sbjct: 246 TPALFVNARGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQE 305

Query: 310 TYGWKTVDQAETYT 323
             G  +V   + YT
Sbjct: 306 LLGHASVTTTQVYT 319


>gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAI---QFLT 138
             LA NS  S+      +                   I + + +   T  S       ++
Sbjct: 19  QGLAANSVTSYTQELRNLGTYLAQQHLTSFKDADRLTIMAYLSNLTATGKSRNSVIHAVS 78

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194
           ++R  +++ V+   +  NP  +V  PK         T  ++ +  +        G + R 
Sbjct: 79  ALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVAEVDRLLAAPDTTTKYGLRDRA 138

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E +  +GLR S+     +  L   +       K      + + D     +        
Sbjct: 139 ILEVMYATGLRVSELVHLKLADLHLEMGLIQTLGKGDKERIIPIGDVATDWINRYLQTSR 198

Query: 254 TFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
              +                 +        K     A +NK  + H +R   AT   + G
Sbjct: 199 PVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYVAVAQINKDVTPHTLRHSFATHILENG 258

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   + YT    + RL
Sbjct: 259 ADLRVVQELLGHADITTTQIYTH-ISKKRL 287


>gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
 gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VES 125
             +  + +       L+  +  +++   D +     ++G   +++     +RS       
Sbjct: 8   ACVDRFLRYLGVERQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRR 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S    L+++R  F W V Q  +A NP   +  PK      +    +D+ +    
Sbjct: 68  AGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDI 127

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   + R   E +  +GLR S+     ++HL   +       K      + +    
Sbjct: 128 DLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 187

Query: 242 MKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +  +      +  F  ++D        ++++A      F     K G+  +   H +R  
Sbjct: 188 VAWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   ++      +    G   +   + YT   D   L 
Sbjct: 248 FATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217]
 gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217]
          Length = 306

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +S +  +       A N+  ++       +R          G     +ITT  +R+ 
Sbjct: 7   RDALSAWLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSDMRAW 66

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +     P S  + L++++  ++W   +E       LS   PK + +  RP + E  
Sbjct: 67  MAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLSPEAA 126

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            +               ++ +     L   GLR S++       L          K G  
Sbjct: 127 SEMIDTLEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGADLPIGTVLRILGKGGKE 186

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V + +     +             N    +       +        +    + G+  +
Sbjct: 187 RLVPVIEPARAAVTQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQTRAQLGLPAT 246

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT G D  RL 
Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLM 294


>gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 367

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 121/346 (34%), Gaps = 32/346 (9%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPR 65
           ++  +G +  YY+ +G G    L         P    F+ +Y +A+              
Sbjct: 13  KKLANGSRATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAAIDA--------PRRA 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIR 120
           +   TL+ +I  Y KS  +  LA  ++  + +   +I  K G          KI  + + 
Sbjct: 65  RTAGTLQSVIDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLE 124

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              E  K +P  A   L  +R++ +W   + ++  N     ++  R     + W   D++
Sbjct: 125 WRDEMAKSSPRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIE 184

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             ++      + RLAFE  L +G R  D               ++               
Sbjct: 185 ALRAV--ASPEIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQ-AKRKRFVDMPVTR 241

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
            +K L           +  + +   +  F   ++    +AG N    H +R  + T+ A 
Sbjct: 242 SLKALLDAQPRTAATILTRNGKPWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQ 301

Query: 300 AGATAHELMATYGWKTVDQAET----YTKGADRIRLGIKNSRRISS 341
           AGAT  E+ A  GW TV         Y   A    L      ++ +
Sbjct: 302 AGATPSEIAAMLGW-TVSTVARMLDLY--QAMTASLSDSAVAKLEA 344


>gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
 gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624]
          Length = 301

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS--GV 123
            K L+ ++         ++ NS  S+    +++         +     I+ + +R     
Sbjct: 6   WKKLLKDFEHYLKIERGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVYQ 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +S++    S  + ++S++  FK+ + + Y    P   ++ PK   +     + E++    
Sbjct: 66  QSKELQARSQSRLISSLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDTLSVEEIDALI 125

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQ 227
           +      SEG + R   E L   GLR S+     +  L      I+              
Sbjct: 126 AGIDLSTSEGHRNRAIIETLYGCGLRVSELVNLHLSDLFFEEGFIRVLGKGDKQRLVPIS 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +              K +       +  F+N   +++         K  A   G+ K+  
Sbjct: 186 EYTQKQINNYIQHQRKEVPQVKEFTDIVFLNRRGKQLTRAMIFTIIKQTAAAIGLTKTIS 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G +++   E YT 
Sbjct: 246 PHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTH 284


>gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
 gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 27/278 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            L   Y K+      + N+ +S+++   +         G  D+ KI T+ I   ++S   
Sbjct: 8   ALFISYLKNE--RQYSKNTILSYQTDLLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S     + ++S+R  +++  +++ + ++P  ++     + +  + +   +M+Q  S 
Sbjct: 66  RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERKLPQFFYAPEMKQVISS 125

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
               +    +    FE    +G+R S+     +  +  ++  I    K      V   D 
Sbjct: 126 LQGNTALTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNKDRYVAFDDK 185

Query: 241 FMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
               L                 ++  F+NN  Q +         +    KAG+      H
Sbjct: 186 TKSALQNYLENARPKLLGSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKAGISGKVHPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT   + GA    +    G + +   + YT  
Sbjct: 246 ELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHV 283


>gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41]
 gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 280

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 12/270 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           +   I ++++   +  LA  +   ++    Q+   + +  + KIT K IR  +     + 
Sbjct: 5   INEFIEKFKEEYMYR-LAPRTIRGYQLSVKQLQDYT-EKPFNKITKKDIRHWMMVLNEKG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +S    L  ++  +++   +  + INP   +  PK      R  +K+ +        
Sbjct: 63  YKQNSIKNKLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVC 122

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLL 245
           E    R   E L  +G+R S+  +   + +  +  SI+    K      V       + L
Sbjct: 123 ERLYERTIIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQHL 182

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNKSAHGVRKFSATISADA 300
                 +          K              F+  + + G   + H +R   A   A+ 
Sbjct: 183 ETYLNSRTDKLPYVFVDKKETRMIRSREINTLFQFYSKQLGFRVTPHMLRHTFAAHLAER 242

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G     +    G +T    + Y +  +  R
Sbjct: 243 GMPLECIQQLLGHETTHSTQLYARLYNHAR 272


>gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 31/282 (10%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS 132
            +         L+  +  ++E+  DQ +R  G+    K   IT+  +   V ++  + +S
Sbjct: 11  RFLAHIDVERGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTS 70

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A    + L S+ +  ++   +  VA +   SV  PK         T +++Q+        
Sbjct: 71  AVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHD 130

Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   +     E +  +G R S++       +  +   ++ T K      V      
Sbjct: 131 DASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYA 190

Query: 242 MKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              L                        F+N   +++         K     A V     
Sbjct: 191 ANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLH 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R   AT     GA    +    G  +V   + YT  + 
Sbjct: 251 PHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 292


>gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 34/302 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE--S 125
           L+  I  +        +L+  +  +++    Q      D       I    +R  ++  S
Sbjct: 3   LEESIHTFLNHCIIERNLSELTMKAYQKDLLQFKHFIPDSTDSIHDINKFILRDYIKFIS 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS 184
            ++ P S  + + +++  F +  R + +  +P   +  +  R     +  +K  +     
Sbjct: 63  NQYKPRSIKRKIATLKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSSINNLLK 122

Query: 185 F--------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +              + E ++     E L  +G+R S+ C+     +      IK    G
Sbjct: 123 YTYTERAKYQLSGRGYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQIKITGKG 182

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAG 281
               V        LL +                   N DK+ ++        +   +  G
Sbjct: 183 KKERVIPICANNALLILREYETLYRDHLLPDSPFFLNRDKRPISDQSVRRIIRKYCSMCG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNS 336
           +    + H  R   AT+  + G     +    G  ++   E YT     + R  L +K+ 
Sbjct: 243 IPEHVTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHP 302

Query: 337 RR 338
           R+
Sbjct: 303 RK 304


>gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 25/283 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE-SRK 127
             I  +  +      LA NS  ++      + +        D   +T K + + +   R 
Sbjct: 14  EAIERFCDACWLEDGLAQNSLAAYRRDLLLLAQWLYKDSGGDLYGVTEKDLTAYIAYRRA 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++A + LT  +  ++ A+R   V  +PC+ +   K+     +  +++ +    +   
Sbjct: 74  DKATTANRRLTVFKRFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPD 133

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
                G + R   E +  SGLR S+        L  N   ++           V      
Sbjct: 134 IETSLGLRDRTMLELMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGEA 193

Query: 242 MKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288
            + L                    F   +    +    F    K  AT A ++   S H 
Sbjct: 194 GQWLRRYLAEARTPLLEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSPHT 253

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 254 LRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 295


>gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
 gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH--- 128
           +  + +        A N+  ++E               D  + +   IR  +E+      
Sbjct: 12  LEAFLEMLSAERGAARNTLDAYERDLKDFSGFLVSRGRDLVQASANDIRQYLENLSDQGL 71

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+A + L+++R    +   +     +PC S+E P+R     +  T E++    S    
Sbjct: 72  SASTAARRLSAIRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALLSAAQR 131

Query: 189 G-------------SQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTI 232
                          + RL         +GLR S+     +  ++        + K G  
Sbjct: 132 AEDGRTQEESVLAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSGKGGRE 191

Query: 233 ITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V L +     +              +    F     +  +   +F+   K  A  AG+
Sbjct: 192 RLVPLSETARAAIDAYLPLRSLRLGEQVSPWLFPSRGRQGHLTRHRFAQLLKDLAVAAGL 251

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +    S H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 252 DASRVSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDER 301


>gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
 gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGKRKQITKGGFKTKKAAQEEVAKVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYAKIQGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +      + +      I  Q+T                    +     +   +LL
Sbjct: 198 GMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEASNRMIPMTEELMGELL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 K+  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349


>gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 32/296 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRS---GVESRKH 128
             +         L+ N+  ++      +     +    D   +T   ++        R  
Sbjct: 28  DAFLAHLAVERGLSGNTIDAYRRDLADLAAFLAERGIGDPADVTRSDLQDYLYHTYRRGL 87

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++  + L +++  F +   +     +P   ++ P+ +         E++         
Sbjct: 88  SAATRARRLAAIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEVAALLQAPPR 147

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
              G + R   E +   GLR S+     +  ++ ++  ++          V L       
Sbjct: 148 TIVGLRDRAMLETMYACGLRVSELIALTLDQVRLDLGLVRVVGKGMKERIVPLGGLAAAA 207

Query: 245 LAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +                ++  F+N   + +    F    KA A +AG+    + H +R  
Sbjct: 208 IEEYLSRTRGTLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAEAGIAKEVTPHTLRHS 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT     GA    +    G   V   + YT              R+  V D   P
Sbjct: 268 FATHLLSNGADLRAVQEMLGHADVSTTQIYTHLT---------MGRLREVYDRSHP 314


>gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 311

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 84/285 (29%), Gaps = 27/285 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
             I  +  +      LA N+  ++        +          +     +     +R   
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKALDQTEDADLSDYFAARHED 76

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              S+A +  T  +  F+WA+R+  V  +P   +   K+     +  ++  ++   +   
Sbjct: 77  SLASTANRRRTVFKRFFQWALREHVVNADPTRLLPTAKQPPRVPQTLSEAQVEALIAAPD 136

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
                G + R   E +  SGLR S+        +  N   ++           V      
Sbjct: 137 VDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196

Query: 242 MKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFKAKATKAGV--NKSA 286
              L                Q+             M    F    K  A +A +    S 
Sbjct: 197 GDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAPLSP 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 300


>gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18]
 gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18]
          Length = 292

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 97/289 (33%), Gaps = 29/289 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           Y ++    +++ ++  ++ S  +Q    + + G+    ++    IR  +      H  SS
Sbjct: 11  YLETE--RNVSPHTLAAYRSDLEQFASSLSRHGEPLPEQVDHLAIRRYLAQLHKGHAKSS 68

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188
             + L+++R LF++ +R+  +  NP   V  PK++         + +       +     
Sbjct: 69  IGRKLSAIRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALVEAPAGAAGL 128

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247
             + R   E L   G+R S+     V  L  +    +    G     V +     K L+ 
Sbjct: 129 PLRDRAVLETLYSCGIRVSELTGMNVGDLDLHQALARVMGKGGKERIVPVGSFARKALSA 188

Query: 248 TPIGKETFFINNDKQ------KMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299
               +      +         ++     +           A    S H +R   AT   +
Sbjct: 189 YLEERGDPPPCDPLILNSRGGRLTRRSVARIVDRHMLMIAAMRKVSPHTLRHTFATHLLE 248

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            GA    +    G  ++   + YT+ +           R+  V D   P
Sbjct: 249 GGADLRCIQELLGHASLSTTQKYTQVS---------IDRLMEVYDQAHP 288


>gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21]
 gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21]
          Length = 293

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 29/294 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK-- 127
           + ++        +++ ++  ++ S  +Q +             ++    IR  +      
Sbjct: 5   LEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAKEREEPRAEEVDHLAIRRYLAQLHKG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+++R L+++ +R+  +  NP   V  PKR+         + +    +  +
Sbjct: 65  CAKSSIGRKLSAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSALVTAPA 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFM 242
            GS    + R   E L   G+R S+     V         +    K G    V +     
Sbjct: 125 GGSELPLRDRAILETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAG 184

Query: 243 KLLAMTPIGKETFFI------NNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSA 294
             LA     +           N    ++     +                S H +R   A
Sbjct: 185 SALAAYLAERADPGPAEPLILNARGGRLTRRSVARIVDAHMLMIATMRKVSPHTLRHTFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    +    G  ++   + YT  +           ++  V D   P
Sbjct: 245 THLLEGGADLRAIQELLGHASLSTTQKYTHVS---------IDKLMEVYDKSHP 289


>gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2]
 gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2]
          Length = 304

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L   +  +          A N+  ++++     +           G     ++T + +R+
Sbjct: 6   LSDALGAWLAGQRALAGTAENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRA 65

Query: 122 GVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +     R     S  + L++++  ++W   +E       LS   PK + +  RP     
Sbjct: 66  WMAHERGRGIGARSLARSLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNA 125

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                       +     ++       L   GLR S++       +          K G 
Sbjct: 126 ASAMIDTVELQANEPWVAARDAAVVTLLYGCGLRISEALGLTSVDVPLPEVLRIVGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284
              V +     + +A            +            +        +    + G+  
Sbjct: 186 ERIVPVIAEAREAVATYVRLCPYPVAQDQPIFRAVRGGILSPRAIQKVMEQARLQLGLPA 245

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   H +R   AT    AG     +    G  ++   + YT   D   L 
Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDAAHLM 294


>gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
 gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1]
          Length = 286

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 92/266 (34%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138
            + +  +  S+     Q           ++TT   +       +        ++  + ++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNEFLNSEHL-ELTTFEYKDARNYLSYLYSNNLKRTTVSRKIS 64

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194
           ++R  +++ + Q+   +NP + +  PK++    + + +E+M    +  +   ++G + R+
Sbjct: 65  TLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFRTVEQDRTKGMRDRV 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R S+     ++ +  N        K      +   +   + +       +
Sbjct: 125 IIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQ 184

Query: 254 TFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303
                + +          +              + AGV +   H +R   AT   + GA 
Sbjct: 185 PRKAVDHEYLIVNMKGEPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGAD 244

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              + +  G   +     YT  +++ 
Sbjct: 245 LRTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington]
          Length = 297

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 98/284 (34%), Gaps = 35/284 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH---TPSSAIQFLTS 139
            +L+ NS +S++                +  ITT++IR  +E          S  + +++
Sbjct: 6   RALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNLHARSINRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRL 194
           ++  + + + + + A NP L+V+ PK + +     + + +        K    EG +   
Sbjct: 66  IKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSKDHTPEGIRLNA 125

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI--------FSIKTQKTGTIITVELPDGFMKLLA 246
               L  SGLR S+     +  +  N               K      + + D  +  + 
Sbjct: 126 MIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVIVINDQAVLSIT 185

Query: 247 MTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                ++ F      +              M    F+I  K+ A   G+N    S H +R
Sbjct: 186 KYLKIRDIFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDIGLNPKNVSPHILR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
              A+   + GA    +    G   +   + YT    + ++  +
Sbjct: 246 HSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQAL 289


>gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885]
 gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 102/315 (32%), Gaps = 27/315 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITT 116
              +           ++EY +       LA  +  ++          +   +     +T 
Sbjct: 6   QGAATDPGTGPWAAALAEYLEILRVERGLAARTLEAYRRDLADFAAFAAGRERGPEAVTR 65

Query: 117 KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             + + +   +       +  + L ++R  F++ V +  ++ +P   +  P+      R 
Sbjct: 66  SLVMAYLHHLRQAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRV 125

Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  ++++           G + R   E L  +GLR S+     +  L  +   ++ +  
Sbjct: 126 MSVAEVERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGK 185

Query: 230 G-TIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKAT 278
           G     V +    ++   +                    N+   +++        +  A 
Sbjct: 186 GGKERVVPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAAR 245

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +AGV++  S H +R   AT     GA    +    G   +   + YT    R  L     
Sbjct: 246 RAGVSRAVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLT-RHHLLEAYL 304

Query: 337 R---RISSVVDSDDP 348
           +   R++    S +P
Sbjct: 305 KAHPRLAQGTASGEP 319


>gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 297

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRS---GVESRKHT 129
              Y +      L  NS  ++ +   ++     D     ++++  +I+     + +   +
Sbjct: 10  FKRYLQLE--RGLTSNSIEAYLNDIAKLEVYCTDQQLTLKQLSVHNIQEFLVWINTFDIS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           P S  + ++ ++  F +   +  +  NP   ++ P+   +       E++ Q        
Sbjct: 68  PYSQSRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQLIGALDLS 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            ++G + +   E L   GLR S+     + +L  +  F     K      + +    +K 
Sbjct: 128 TADGMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKY 187

Query: 245 LAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
           L +                     N     ++     +  K  A K G+ K  S H  R 
Sbjct: 188 LNIYLNEIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   + GA    +    G +++   E YT 
Sbjct: 248 SFASHLVEGGADLRAVQDMLGHESITTTEIYTH 280


>gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS]
 gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS]
          Length = 302

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 88/283 (31%), Gaps = 30/283 (10%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133
              + N+  ++E+   Q+         K G    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +        E
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +   E L  SG+R ++     V  +      ++          + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195

Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                             F+N    ++         K  A +AG++   + H +R   AT
Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
                GA    +    G   +   + YT       R   + + 
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298


>gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
 gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305]
 gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105]
          Length = 310

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 92/274 (33%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
             L+  +R ++ES   + +      G     +I  + + + V S      +  S  + L 
Sbjct: 23  KGLSEATRRAYESDLKKYMAWLARHGIDRPDQIRQEDVETFVASLSQEGESSRSIARRLA 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++   +     +    V+ PK  +      T E++++     S          +
Sbjct: 83  SIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEEVRRLLEKTSNERDTDPVVLR 142

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------TGTIITVE 236
            R   EFL  +G R S++  A +  +  +    +                        ++
Sbjct: 143 DRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGNKQRLVPLGSYACQAMERYLD 202

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            P   ++  A         F+N   ++++        +  A +AG+ K    H +R   A
Sbjct: 203 GPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKAADRAGITKEVHPHTLRHSCA 262

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T     GA    +    G  +V   + YT  + +
Sbjct: 263 THLIQGGADVRMVQELLGHASVTTTQIYTHISPQ 296


>gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
 gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLT 138
             L+ N+  S+     Q         D   RK+    I   +           S  + L+
Sbjct: 23  KRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGREKTSQARALS 82

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
            +R  + + +  + +   P   ++ PK         T E++ +  +       +G +   
Sbjct: 83  GIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSA 142

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK- 252
             E L   GLR S+     +  L      I+          V +     + +      + 
Sbjct: 143 MLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKIQRYLDDRA 202

Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +  F+NN   ++         +    +AG++K  S H  R   AT   + GA+ 
Sbjct: 203 TKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATHLLEGGASI 262

Query: 305 HELMATYGWKTVDQAETYTK 324
            ++    G +++   E YT 
Sbjct: 263 RQVQEMLGHESILTTEIYTH 282


>gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
 gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  +   +++   ++ +      GD     +    IR  +     
Sbjct: 3   LTDSFLDYLLYERNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R   P++  + L+S+R  +K+ +R+  VA +P   +  PK+K        + D+ +    
Sbjct: 63  RGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDD 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                  EG + RL  E    +G+R S+      + +  +      T K      +   +
Sbjct: 123 VDFGEGFEGCRDRLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDE 182

Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
                +      +        +    +    + +    A   K  +        +S H +
Sbjct: 183 ELRCSMQEYVNVRNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
 gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44]
          Length = 318

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 90/288 (31%), Gaps = 26/288 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK---HIRSGVESR 126
           L   I           L+ N+  ++        R        + +       ++    +R
Sbjct: 28  LDQFIDALLLED---GLSRNTLSAYRRDLTATARWLARLQPPKALDAALEGDLQGYFTAR 84

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +S+ + LT +R  F WA+R++ +A +P + +   K+     +  T+E ++    
Sbjct: 85  VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLD 144

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQKT 229
                   G + R   E +  SGLR S+     +  L                 +     
Sbjct: 145 APDVDSPLGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKERLVPFGQ 204

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +E      +   +     E  F+      M+   F +  K  A  AG+    S H
Sbjct: 205 EAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSPLSPH 264

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +R   AT   + GA    +    G   +     YT  A      +  
Sbjct: 265 TLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHA 312


>gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H]
 gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H]
          Length = 311

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 97/293 (33%), Gaps = 22/293 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +  + +        A+ +R ++ S               +   + +RS +          
Sbjct: 14  VEAFLEMLAAERGAALKTRQAYASDLADFATHCAPLSLSEARGEEVRSYLAELSRAGLAA 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +A + L+ +R  +++ + +     +P    + P+  +   RP  +++++      + G 
Sbjct: 74  RTAARRLSCLRQFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLLETGTRGH 133

Query: 191 QP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
           +        R A E L  +GLR S+        +      +    K G    V L     
Sbjct: 134 ENERRDIVSRAALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRERLVPLSQSAR 193

Query: 243 KLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                             F   + ++ +    F     A A KAG++    S H +R   
Sbjct: 194 DAADQLVHFDRDLGSPWLFPGRDPQKHLTRQGFDKILLACALKAGLDPDRVSPHVLRHSF 253

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDS 345
           A+     GA    L    G   +   + YT+  ++R+R  +     ++    +
Sbjct: 254 ASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARKAGA 306


>gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 323

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDV 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 SRQPLSRQQFWALVKRYAAAAGIDPVTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens
           YS-314]
 gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC
 gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium
           efficiens YS-314]
          Length = 310

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
             +  +   + S    +     D    + T  ++R+ +        + ++  +   S++ 
Sbjct: 40  GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 97

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197
              WAV+   ++ +    +  PK      R   +    +F    +  +     +     E
Sbjct: 98  FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 157

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            L  +G+R S+ C   +  + ++   ++   K      +         L      ++   
Sbjct: 158 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 217

Query: 257 INNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
              D         +++A Q        A  AG +  S H +R  +AT   D GA   ++ 
Sbjct: 218 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 277

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  ++   + YT  + +  L
Sbjct: 278 EMLGHSSLQTTQIYTHVSSQRLL 300


>gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 392

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 93/327 (28%), Gaps = 16/327 (4%)

Query: 14  ERTRHGKIIY--YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINSPR 65
                G+ IY   FR G   RR+ +      T   A   A+   +  R            
Sbjct: 44  RVHPSGRKIYLAQFRAGGRIRRVNIGPHGPLTPDQARTEAMKHLSDVRLGSDPGAQRDRL 103

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           +   T+K     +           +++  +    D  I  K G      IT   +    +
Sbjct: 104 RAAATMKEFGKRFLDEHVASHCKPSTQYEYRRCVDLFIIPKLGTLKVIDITRADVVELHQ 163

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K TP  A + L  + ++F  A      +       +  + K      +   D      
Sbjct: 164 GLKETPYQANRVLGVLSIMFTLADTWGVRSDGSNPCWKVKRYKEVKRERYLTPDELARLG 223

Query: 185 FWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELP 238
                     +       LL +G R  +      +++      ++    KTG  +     
Sbjct: 224 KVLREAEGEPEAAYCIRLLLLTGCRLGEIQTLKWEYVDARAGVLRLPDSKTGAKVVPIGK 283

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                L  +  I    + I    +    T     ++    +AG++    H +R   A+ +
Sbjct: 284 AALDVLADIPRIEGNPYVITGKMEGQYLTDTQKPWRRLRARAGLDTLRIHDLRHSFASDA 343

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              GA    +    G   V     Y  
Sbjct: 344 LQLGADLTMIGRLLGHTQVQTTARYAH 370


>gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
 gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107]
          Length = 313

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 103/300 (34%), Gaps = 25/300 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126
               ++ +          + +++ ++    ++     R +G     ++  + +R  V S 
Sbjct: 8   FAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASL 67

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
                   S  ++L+S+R  F++A+R  +++INP   +  PK   +  +    +   QF 
Sbjct: 68  HRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV 127

Query: 183 --KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239
             +       + R   E +  SGLR ++     +  +         T K     T+ +  
Sbjct: 128 AVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGS 187

Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             +  L      +E +        FI    ++++     +  +  + + G+      H +
Sbjct: 188 VAIAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHML 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           R   A+   ++      +    G   +   + YT   D   L     K   R      SD
Sbjct: 248 RHSFASHMLESSGDLRLVQELLGHANISTTQIYTH-LDFQHLAKVYDKAHPRAGRKKSSD 306


>gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14]
 gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14]
          Length = 301

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 94/286 (32%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123
           P TL+  +  + +       L+++++ +++    ++  +  +       ++    +R   
Sbjct: 3   PRTLEQPLERFYEYLRSERELSLHTQQNYKRQLTRVAEQLVELSVDNWQQVDAGWVRQIA 62

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+++R  F + V Q  +  NP   V  P++     +    ++M 
Sbjct: 63  SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+H+  +   ++          V 
Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +A     ++      +          +++             K  V  + + 
Sbjct: 183 FSGLAREWIAKWLKLRDNIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 298

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 99/286 (34%), Gaps = 26/286 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125
               +++Y+        L+ NS  ++     ++I+   + +       I  + I+  + +
Sbjct: 3   WTNALNDYKLYLKIERGLSNNSIDNYSFDVKKLIKHLEENNIVSSPVNIQKQTIQEFIYA 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              T    S  + ++ ++  F + V ++Y   NP  +++ PK   +     +++++    
Sbjct: 63  ISKTINSRSQSRLISGLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLI 122

Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
           S       +G + R   E L   GLR S+     +  L  +  +   T K      V + 
Sbjct: 123 SAVDLSTPQGERNRCILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIV 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKS-- 285
               K + +         +   + K                     K+ A K  + K+  
Sbjct: 183 PATQKFINIYRNEVRNHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGKTIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            H  R   AT   + GA    +    G +++   E Y    D+  L
Sbjct: 243 PHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMH-VDKSHL 287


>gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
 gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894]
          Length = 331

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 44/297 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126
           L+  + +Y         L+ N+  ++     +    + + G      +    +   V + 
Sbjct: 16  LEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHLERLGRTSLGAVREDDVTGFVTAV 75

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         + SS  + L ++R   ++A  +     +P   V  P +        + + 
Sbjct: 76  REGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLRRLPHALSVDA 135

Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------- 219
           + +       G      + R   E L  +G R S+     V  L                
Sbjct: 136 VTRLLDAAGVGDGPVPLRDRALLELLYSTGGRISEVVGLDVDALGWLGAGSAPGDGAGDD 195

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267
                    K      V +    +  L    +                F+N   + ++  
Sbjct: 196 GPAVVRLHGKGDKQRIVPVGSYAIAALDAYLVRARPALAAAGSGTPALFLNTRGRPLSRQ 255

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 +A + +AG+   S H +R   AT     GA    +    G  +V   + YT
Sbjct: 256 SAWAVLQAASARAGLENVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYT 312


>gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri
           93-146]
 gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 91/285 (31%), Gaps = 21/285 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR--- 120
           P +L   +  + +       L+  +  ++         ++ + G  D+  + T  +R   
Sbjct: 2   PESLSTPVVAFLQMMRVERQLSPRTVETYRRQLAASVALLLEGGLCDWTALDTVRVRSLV 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +    +   P+S    L+++R    W V +  +  NP   V  P++     +    +D+ 
Sbjct: 62  ARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHLPKNLDVDDVN 121

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
           +        +   + R   E +   GLR S+      +H            K      + 
Sbjct: 122 RLLDIDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTTGEVWVLGKGSKERRLP 181

Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           +    ++ L              +  F++    +++       F     K GV  +   H
Sbjct: 182 VGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 242 KLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 285


>gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1]
 gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1]
          Length = 292

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHT 129
           I  +     +  + +  + +++     Q+        G F+  ++  + IR  + S    
Sbjct: 2   IESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMDK 61

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +     
Sbjct: 62  GYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDET 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +G + RL  E    +G+R S+      + +  +   +K         +      
Sbjct: 122 DFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGDE 181

Query: 242 MKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGVR 290
           ++ L +  I             FFI  + +++         K   +  A + K S H +R
Sbjct: 182 LQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 242 HTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 276


>gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320]
 gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
 gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC
 gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis]
 gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320]
 gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 98/292 (33%), Gaps = 22/292 (7%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTK 117
           +     P TL   I  +         L+  +  +++     I +        +   + ++
Sbjct: 2   SQIIDVPETLSLAIDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVAIKINQWSLLESQ 61

Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           H+R  +     +   P+S     +++R    W V Q  +A+NP   V  PK      +  
Sbjct: 62  HVRMLLAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRHLPKNM 121

Query: 175 TKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
             +++ Q  +   +     + R   E +  +GLR S+     +  +      ++   K  
Sbjct: 122 DVDEVSQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQEGEVRVLGKGS 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV 282
               V L    ++ L      +E +   +          ++++       F+    K G+
Sbjct: 182 KERKVPLGRKAVEWLQHWFAMRELYSPEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGL 241

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + + H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 242 SSHVNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 292


>gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 309

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 31/282 (10%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS 132
            +         L+  +  ++E+  DQ +R  G+    K   IT+  +   V ++  + +S
Sbjct: 13  RFLAHIDVERGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTS 72

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A    + L S+ +  ++   +  VA +   SV  PK         T +++Q+        
Sbjct: 73  AVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHD 132

Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   +     E +  +G R S++       +  +   ++ T K      V      
Sbjct: 133 DASEAVSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYA 192

Query: 242 MKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              L                        F+N   +++         K     A V     
Sbjct: 193 ANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLH 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R   AT     GA    +    G  +V   + YT  + 
Sbjct: 253 PHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 294


>gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 325

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 43/307 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  +        L   +  S+       I  K G    + ++   I+    S   
Sbjct: 12  TFSQWLDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLL 71

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P +       +    K A++  Y+  N   +V  PK +   I+  + E +  F   
Sbjct: 72  ENLSPKTVKNIHVIIHSALKQAIKCGYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQA 131

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               S    AF   LY+GLR  +        +  +  +I  +++   +          LL
Sbjct: 132 AQTDS-LYPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLL 190

Query: 246 AMTPIGKET-----------------------------------FFINNDKQKMNATQFS 270
                                                        F+      ++   F 
Sbjct: 191 QPPKTKAGYRVIPIPDFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFE 250

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-AD 327
             FK    KA +     H +R   AT+          +    G + +    + Y+    +
Sbjct: 251 RKFKQLLKKANLPNIRLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIE 310

Query: 328 RIRLGIK 334
             +    
Sbjct: 311 LKKKATS 317


>gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 363

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 30/330 (9%)

Query: 25  FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRK-KPTTLKWLISEYRK 80
           F   +GRR  +             AY   L  +     Y    +  +  T +    E++ 
Sbjct: 6   FTHPNGRRQTVRKVSPVQTRRGAEAYERQLRNALLTGTYDKEAQADQAPTFRVFAREFQT 65

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFL 137
           +    +   +++ S E      +I   G      I  +HI     ++   ++  +    L
Sbjct: 66  NYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLKDYSRKTLNNHL 125

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           T +R L + A     +   P +     K      R     + ++         + R+   
Sbjct: 126 TILRKLLETAREWGLIDKVPSI--RWLKAAKPEFRWLDFAEAERLLEASRCEPEWRMMIL 183

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------------ITVEL 237
             L +GLR  +      Q +      I  ++                        +   +
Sbjct: 184 LGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREVPLSPATLAEFV 243

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                     +P        ++  + +         +    +A +     H +R   A+ 
Sbjct: 244 RHQARYRHLRSPWVFCQLDGDHAGEMLTKGMCKWPLRRARDRADLEALGWHDLRHSFASH 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
            A  G     +    G  T++    Y   A
Sbjct: 304 LAMRGVPLKAIQELLGHSTIEMTMRYAHLA 333


>gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans
           PD1222]
 gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 312

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 28/287 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125
           +  +  S       + ++  ++++     +   G +            +T   +R+   +
Sbjct: 18  LERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDMRAFAAA 77

Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +    SA    + L++ R   +W   +     +  L+   PK      RP   E  Q  
Sbjct: 78  ERGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQAQDV 137

Query: 183 K-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                         ++       L   GLR S++                  K G    V
Sbjct: 138 LEITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGADWPLREALTIRGKGGRERQV 197

Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            +     + +A                F      +++ T  S   +      G+    + 
Sbjct: 198 PVLPIAREAIADYLRLCPYPLQAKAPLFRGARGGRLSPTLISGAMRQARQVLGLPPTATP 257

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT    AG     +    G  ++   + YT   D   L +
Sbjct: 258 HALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAV 304


>gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 303

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 21/286 (7%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSG 122
           +  TL   +  + +       L+ ++  S+      II     SG  D+R++ +  +R  
Sbjct: 4   ETQTLALPVEAFLRFLRVERQLSPHTIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMI 63

Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      +S    L+S+R    W V Q  +++NP   +  PK+     +    +D+
Sbjct: 64  TARSKRMGLEAASIALRLSSLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDV 123

Query: 180 QQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITV 235
            +     S      + R   E +  +GLR S+      +H+           K      +
Sbjct: 124 NRLLEIDSSDPLAVRDRTMLEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSKERKL 183

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSA 286
            +    +  L      +E +   +D        ++++       F     K GV  + + 
Sbjct: 184 PIGRTAIHWLEQWLPLREIYDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQGVTSHINP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 97/381 (25%), Gaps = 57/381 (14%)

Query: 17  RHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R+GK  Y  R   GR     R+               L           S      TL  
Sbjct: 9   RNGKKYYRLRVDLGRDSDGNRIRKTFYGKSKKDAEDKLQEYKNGLNSGLSNDYDKLTLGN 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPS 131
           +   +       ++  ++   +E  +   I+         +++ +  I+       ++  
Sbjct: 69  VCKLWLFEKIKNTVKPSTFERYEGVYRIYIKSSPLYPVKLKELKSLDIQRYYNDLFNSGK 128

Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-------PKRKTEGIRPWTKEDMQQ 181
           S          ++  F + + + Y+  N C+                +        D Q 
Sbjct: 129 STSIIKNLDKLLKSFFNYCIDEGYIVRNYCIGKSITIPESNSVNENKKDDITVFTVDEQN 188

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------------ 223
                 +  + +  F   L +GLR  +        +     +                  
Sbjct: 189 QFINAVQDHRLKALFLLDLGTGLREGEILGLKWSDIDFENCTLSVKRAIKGVTLIEGTKR 248

Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQK 263
                    +   +I T+  P+  + +L                     +  F       
Sbjct: 249 NYHLIEQTPKTKNSIRTIPFPENLIPILEKHQLQQKEEKIKAGPAYTKNDYVFCTELGLP 308

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
           ++       ++       +  K  H +R   AT   +       +    G   ++     
Sbjct: 309 IDPRNLRRSYERVLKNNNIPYKKFHSLRHTFATRLFENNVPLKTVQMLLGHSNINITANI 368

Query: 322 YTKGADRIRLGIKNSRRISSV 342
           YT      +   K   +I+S+
Sbjct: 369 YTHVMPPEK--FKAIDKINSI 387


>gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
 gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2]
          Length = 279

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 11/263 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +    + Y+        +  +   ++     +I+  GD     ITT+ I+  +       
Sbjct: 3   VSEAWNLYKADKQIQGYSSQTLKVYKVQMSLLIKYFGDIKITDITTESIKLYLGEVAAEL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS    +  ++ LFKWA  ++YV++NP  +++ PK ++   +  T+E+++  +    +
Sbjct: 63  KASSLCHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEIELLREAC-K 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247
            +  +  FEF+  +G R  +  +     +       I   K      V         L  
Sbjct: 122 TTFEKALFEFMYSTGCRIGEVVKLDRHSINMAEQSVIVFGKGKKEREVYFNTRCSIWLKR 181

Query: 248 TPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               +               +M+  Q     K  + +AG+NK    H +R   AT   + 
Sbjct: 182 YLEERYDDQQALFVTIRAPHRMSIAQMRYVIKQISKRAGINKCIHPHQLRHSYATTLINN 241

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G +  +    Y 
Sbjct: 242 GAPLEVIQNLMGHEKSETTRVYA 264


>gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
 gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1]
          Length = 315

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 82/290 (28%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  +++      +           G     KIT   +R+ 
Sbjct: 14  RDALQSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAW 73

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +     P S  + L++++  ++W   +E       LS   PK   +  RP      
Sbjct: 74  MAQTRSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAA 133

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + ++         ++       L   GLR S++                  K G  
Sbjct: 134 QAMIDSVEMQSRHAWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK- 284
             V +       +             +           + A   S        + G+   
Sbjct: 194 RVVPVLPAARDAVEAYLRVCPFGKERDAPLFRAVRGGPLAARAISQVMADARMQLGLPAS 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   DAG     +    G  ++   + YT   D  RL  
Sbjct: 254 ATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302


>gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
 gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316]
          Length = 300

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           ++ + +       L+  + ++++   D   QI  + G   +++     +R  V     +K
Sbjct: 10  VTRFLRYLGVERQLSPVTLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKK 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P+S    L+++R  F W V Q  +  NP   +  PK      +    +D+ +      
Sbjct: 70  LSPASLALRLSALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F    +        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
 gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996]
          Length = 291

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 19/275 (6%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             LI +  +S      L+ N+   +    ++I  +   G + +       +   V +   
Sbjct: 3   DELIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVYAADE 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + L++ + L+ W    E    NP   ++ PK+  +     T+  +++  +    
Sbjct: 63  KHSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLAAPDT 122

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTII 233
               G + +   E +  +GLR +++ +  +  L  N   I+                 + 
Sbjct: 123 ETPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVY 182

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
            VE      + L +     +  F++  +  ++     +  K  A  AG+   S HG+R  
Sbjct: 183 WVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAGITSLSPHGLRHA 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AT   + G     +    G   ++  + YT  A+
Sbjct: 243 FATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277


>gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
 gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1]
 gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163]
 gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429]
          Length = 307

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 82/275 (29%), Gaps = 28/275 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---SRKH 128
            EY ++      +  +  ++     + +       G  D+  I    +R  +     RK 
Sbjct: 12  EEYLQAE--RQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIYLNNLYERKL 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             +S  + ++S+R  + + +       NP  ++E      +        ++ ++      
Sbjct: 70  AKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYLRAAAD 129

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-- 241
               +  +     E L  +G+R  +        +  N   +     G    +        
Sbjct: 130 PQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQRIIPFGKPAL 189

Query: 242 ---MKLLAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGV--NKSAHGV 289
               + L       + F   +    +N               K  + ++ +  N   H +
Sbjct: 190 ASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKLTANIHPHML 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA    +    G  ++   + YT 
Sbjct: 250 RHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 284


>gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 295

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 92/271 (33%), Gaps = 23/271 (8%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           I+E+ K        + N+ +S+     Q+       G  D  K+T   + S V   +   
Sbjct: 5   INEFVKYLREVKKTSKNTEVSYHRDLLQMASYLEEQGITDVEKVTKTSLNSYVLHLEKEG 64

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +  + L SM+  F +   +  +  +P   ++ PK + +     T E++       +
Sbjct: 65  RATTTISRTLASMKAFFHYEYGEGRIRRDPAELIKAPKIEKKAPTILTVEEVNSLLEQPT 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             S    + +   E L  +G+R S+     V+ +   +  I  +       +       +
Sbjct: 125 GDSPKELRDKAMLELLYATGIRVSELIHLKVEDMNLAVGFITCRDEHKERMIPFGKVARQ 184

Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            +                 E  F N   + M+   F    K    KAG+  + + H +R 
Sbjct: 185 AMVNYMESGRASLLKGQESEWLFTNCSGRPMSRQGFWKIIKYYGEKAGIQADITPHTLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A      GA  H + A  G   +   + Y
Sbjct: 245 SFAAHLLGNGADIHAVQAMMGHSDMATTQMY 275


>gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16]
 gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16]
          Length = 391

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 98/341 (28%), Gaps = 36/341 (10%)

Query: 20  KIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTG--------STPKREYINSPRKKP 68
           K  +Y+R    +R   I                   G         T + E   +  ++ 
Sbjct: 41  KYYFYYRLNGKQRNYLIGSADSMTPAQARDLAKEKAGLVASGVDVQTQRAEERKAEVRRS 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSG---VE 124
            TL   + E+ K   +  +   + + S++S  +       D     I    I+       
Sbjct: 101 LTLGKYLEEHYKDYLFA-MNPKTAKQSYQSIANTFA-FLADKPLEDIKAWDIQQWVTDKR 158

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++       ++     AV  E++  +   SV+  K     IR  ++ +     S
Sbjct: 159 KLGRAPATIEYTFNRLKAALNRAVEWEFIESHNLSSVKIAKEDNTRIRYLSELEEAALLS 218

Query: 185 ---------FWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIFSIK----T 226
                         S     F   L     ++G+R  +      + +      +      
Sbjct: 219 ALAAREAQLCEDNDSHQYADFFTPLITLAMHTGMRKGEMLTLRWESVSFENRYLTILSEN 278

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K+    T+ + D    +L+               +    + F   ++     AG+ N  
Sbjct: 279 AKSKKKRTIPMNDTVFNMLSQWRAQNLNEEYVFVHEGKRVSFFQYPWQNLLKAAGISNFR 338

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+    AG   + +    G   +     Y   A
Sbjct: 339 FHDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHLA 379


>gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
 gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  +   +++   ++ +      GD     +    IR  +     
Sbjct: 3   LTDSFLDYLLYERNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R   P++  + L+S+R  +K+ +R+  VA +P   +  PK+K        + D+ +    
Sbjct: 63  RGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDD 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                  EG + RL  E    +G+R S+      + +  +      T K      +   +
Sbjct: 123 VDFGEGFEGCRDRLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDE 182

Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
                +      +        +    +    + +    A   K  +        +S H +
Sbjct: 183 ELRCSMQEYVNVRNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4]
 gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
 gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125
           +I +Y++      SL++N+  ++ +  D+++           D     +      +G+  
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQR--FAAGLHD 73

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S 
Sbjct: 74  IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +  F     K      V +   
Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287
            +  + +    +    +    +             +        K  A KAG+ K  S H
Sbjct: 194 AINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
 gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 94/298 (31%), Gaps = 28/298 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               ++   + + + +      L+ N+  ++     ++  +  +     + T  +    +
Sbjct: 3   SDKDSIDAFLDQLWLED----GLSQNTLAAYRRDLSKLAARLAERGVS-LETATLADLEQ 57

Query: 125 SR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +         P++  +  +++R  ++   R      +P   +  PK+     +  ++ D+
Sbjct: 58  ALLAGVASEKPATRARLTSALRRYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDV 117

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIIT 234
           +            G + R   E L  SGLR S+     +  L   +       K      
Sbjct: 118 EALLDAPDVETPLGLRDRAMLEVLYASGLRVSELVGMTLNQLNLLDGVVKTMGKGSKERL 177

Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
           V L +     L                 +  F+   K  M            A + G+  
Sbjct: 178 VPLGEIAQDWLLRYLKEARPLLLAGQPCDAVFVTQRKAGMTRQMAWHLITQYAGRQGLAK 237

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            S H +R   AT   + GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 238 VSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 294


>gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 306

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 82/282 (29%), Gaps = 29/282 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRS 121
           L  +I ++     +  S + N+  S+      +I                 K++   +RS
Sbjct: 3   LGSIIEKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRS 62

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              SR     +A    + L+ +R  FK+      +      S+ RP ++    +  +  +
Sbjct: 63  WFTSRYARGVNARSNTRALSVIRNFFKYIKNNYEINNEAVFSLSRPIQRRTLPKALSISN 122

Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++                  +       L  +GLR +++    V  + N      T K  
Sbjct: 123 IETLLKEMKLPDLGEPWVVKREIAIVVLLYGTGLRITEALNLKVSDISNESLI-VTGKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN- 283
               V +     K +         F             K+  T  +   +       +  
Sbjct: 182 KQRQVFILPVVKKCIQKYIKACPHFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPE 241

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT           +    G  +++  + YT 
Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 283


>gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
 gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10]
          Length = 337

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 98/309 (31%), Gaps = 42/309 (13%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESR 126
             I+ +  +       A N+ +++      +    G  +      +   I +     ++ 
Sbjct: 17  QWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNLDFGSASRDDIEAYLIACDAE 76

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++  + L++++ ++++A  + + + NP + ++ P R+    +     ++ +     
Sbjct: 77  GLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIEVDRLLDAA 136

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
            +  +            E L  +G+R S+     V   + +   +    K G    V L 
Sbjct: 137 RQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKGGKERMVPLS 196

Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 LA                     +  F        +   +F +  K  A   G+
Sbjct: 197 PPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLIKEFAVAGGL 256

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                S H +R   AT     GA    + A  G   +   E YT   D          R+
Sbjct: 257 PPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLD---------ARL 307

Query: 340 SSVVDSDDP 348
           S +V    P
Sbjct: 308 SELVLEHHP 316


>gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1]
          Length = 314

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 84/294 (28%), Gaps = 29/294 (9%)

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFDYR---KITT 116
                L   I ++R         + ++   +                G+ D     ++  
Sbjct: 9   AARPDLAAAIGQWRDWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQP 68

Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              R+ + +R+      SS  + ++S+R  FK+  R + V      +V+ P+      +P
Sbjct: 69  ADFRAFLAARQADGLGRSSVARLMSSLRGFFKYLDRHDLVHNPAINAVKSPRPPKSLPKP 128

Query: 174 WTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              ED  +               ++    F  L   GLR  ++     + +        T
Sbjct: 129 LAAEDAIEALSTAGELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDAMTIT 188

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATK 279
            K      V +     + +             +    + A              +     
Sbjct: 189 GKGRKQRLVPVLPIVRQAIGEYVTLCPHPLAADGPLFVGARGGLLNPGVVQRQMRRLRAL 248

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G+    + H +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 249 MGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYT-QVDEARL 301


>gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
 gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136]
 gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM
           17393]
          Length = 372

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y+        A+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++    +   +       C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR S+        +  +     ++  K        L    MK L       + 
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274

Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                + +       +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 24/292 (8%)

Query: 61  INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTK 117
             +     T L  L   +  +      L   +  ++ S      R  G            
Sbjct: 2   TAATNSAETPLAEL-EAFLDALWMEQGLGERTLSAYRSDLLGFQRWLGGQGGSLLSARRD 60

Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            + + +  R      P S  + LTS+R  +++ +R+  VA +P   VE P+         
Sbjct: 61  QVLAYLGGRLGQGAKPRSVARLLTSLRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGL 120

Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++ ++++  +        G + R   E L  SGLR S+     +  L  +   ++    G
Sbjct: 121 SESEVERLLAAPDPETPLGQRDRCMLEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKG 180

Query: 231 -TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                V L +  ++ +                 +  F+    + +    F    K  A  
Sbjct: 181 GRERLVPLGETALEQVQQWLREGRPALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARS 240

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            G+    S H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 241 VGITRPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQR 292


>gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 309

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 32/285 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121
           L  +I ++ +      S + N+  S+      +I        G+ +     K++   +RS
Sbjct: 3   LGSIIEKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR     +A    + L+ +R  FK+      +      S+ RP ++    +  +  D
Sbjct: 63  WLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPD 122

Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++                  +       L  +GLR S++    V  + N      T K  
Sbjct: 123 IKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESLI-VTGKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281
               V +     K +            NN+ Q         K+  T  +   +       
Sbjct: 182 KQRQVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRMLN 241

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    S H  R   AT           +    G  +++  + YT 
Sbjct: 242 LPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 286


>gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
 gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM
           13528]
          Length = 328

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 92/293 (31%), Gaps = 44/293 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGV-------- 123
              + N++  ++       R                + D   I T  IR           
Sbjct: 28  RGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFENIDISDINTDFIRKITLSDLYAFI 87

Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 R +   +  + +  ++  FK+   + + +  NP L +E PK         + ++
Sbjct: 88  SFAENYRNNGNYARARKVACLKSFFKYLFSKAKLIDTNPALELESPKIDKRNPIYLSLKE 147

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +   +        +      F L  G+R S+ C   +  ++ +  ++  +      T+ 
Sbjct: 148 SKILLNSIDGKFKERDYCIITFFLNCGMRLSELCSINISKIKEDTLTVVGKGN-KERTIY 206

Query: 237 LPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN--- 283
           L    +  L      +   +             +  ++N     +  K     AG++   
Sbjct: 207 LNRACLTALNNYLEIRNKDYDKIKDKDALFLSKNHTRINKRSVEMMLKKYLKNAGLDSNK 266

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334
            + H +R  +AT+    G      L    G + V   + YT   D ++R  + 
Sbjct: 267 YTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVN 319


>gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53]
 gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53]
          Length = 401

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 100/345 (28%), Gaps = 23/345 (6%)

Query: 13  KERTRHGKIIY-YF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64
           + R   G+  Y  +   +   R I+L    + T   A                     + 
Sbjct: 36  EVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGVDPLKERAG 95

Query: 65  RKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +K   T +    + Y   +     +  +  +       +I   G     +ITT+ + +  
Sbjct: 96  KKLVPTFEAFAWNSYMPFSQANKRSWKTDETLIRT--HLIPTFGKKHLDEITTEDVLNMQ 153

Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWT 175
           +        P S  + L  +R +F  A R   +          + + +   K E      
Sbjct: 154 QAGLKAGAAPGSVNRRLILLRYMFNTAWRDWKIAGVKENPTHGVRLLKENNKKERYVRAD 213

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +      +   S+ +  +    FL+ +G R ++   A    +       +   T +    
Sbjct: 214 EMARLYAEICSSQNTMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPDTKSGYAR 273

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVN-KSAHGVRK 291
            LP     +  +  +   +                     +     KAG+     H +R 
Sbjct: 274 HLPLNDGAMAVLHQMRGVSRSHFIFGNPKTGKAYVHIWYAWNTARKKAGLPDVRMHDLRH 333

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             A++  + G + +E+    G   +   + Y        L   N 
Sbjct: 334 TFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378


>gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua]
 gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516]
 gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides
           F]
 gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10]
 gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1]
 gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia
           pseudotuberculosis YPIII]
 gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92]
 gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC
 gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516]
 gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua]
 gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92]
 gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F]
 gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125]
 gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758]
 gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola]
 gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII]
 gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516]
 gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A]
 gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004]
 gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038]
 gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27]
 gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003]
 gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+      ++    + G   ++ +    +RS V   K   
Sbjct: 12  VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   V  P+      +    +++ +  S   
Sbjct: 72  LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+   +       K      V L    + 
Sbjct: 132 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F+ N  ++++A      F     K GV  +   H +R   A
Sbjct: 192 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 306

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 28/289 (9%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           L+ L   Y +       L   +  ++     Q   +       +ITT  +   +      
Sbjct: 4   LQTLTENYLEYCRTQKCLDEKTLKAYRIDLRQFSEEPSLEKIIEITTNDLEDYIARLHQQ 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------------TEGIRP 173
           + P +  + + S++  F +   +E +AINP   ++   R+                    
Sbjct: 64  YKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKFLTMI 123

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGT 231
           +T+ D  +         +     E L  +G+R S+ C    + +  +  SI         
Sbjct: 124 YTQRDNAKTNYQRRNALRDAAVSELLFATGMRISELCSLKNEDINLHDGSILIYGKGDKE 183

Query: 232 IITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                  D   K++                FF N + + ++            + A ++ 
Sbjct: 184 RRIHIGNDSVSKIIEEYKAEFQTEIRSCNHFFANQNGKPLSDQAVRRMINKYCSLADIDL 243

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + H  R   AT   +A      +    G  +++  E YT      + 
Sbjct: 244 HITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQR 292


>gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
 gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314]
          Length = 296

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
             +  +   + S    +     D    + T  ++R+ +        + ++  +   S++ 
Sbjct: 26  GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 83

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197
              WAV+   ++ +    +  PK      R   +    +F    +  +     +     E
Sbjct: 84  FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 143

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            L  +G+R S+ C   +  + ++   ++   K      +         L      ++   
Sbjct: 144 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 203

Query: 257 INNDKQ-------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
              D         +++A Q        A  AG +  S H +R  +AT   D GA   ++ 
Sbjct: 204 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 263

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  ++   + YT  + +  L
Sbjct: 264 EMLGHSSLQTTQIYTHVSSQRLL 286


>gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 292

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139
              + N+  ++    ++ +      G  D R++T  H+ + +   + +   SSA + L  
Sbjct: 7   KGASKNTVSNYRRDINRYVDWLAESGITDLRRVTRAHVENYLVFLRESLAQSSASRALIV 66

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192
            R L K+A+ +  +  +    V  PKR        + +D       +   +S      + 
Sbjct: 67  ARGLHKFALAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAIPTDESATPIDIRD 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLLA 246
           R   E L  +G R S+     V  +     +          K      V L    +  + 
Sbjct: 127 RALLEMLYGTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQRLVPLGSHAVTAVE 186

Query: 247 MTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
              +            + F+N   + ++        K  A +A +    S H +R   AT
Sbjct: 187 NYLVRARPVLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLSTKISPHTLRHSFAT 246

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
              + GA    +    G  +V   + YT   AD +R
Sbjct: 247 HLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLR 282


>gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str.
           Malish 7]
 gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC
 gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7]
          Length = 305

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    L    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289


>gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7]
          Length = 298

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 92/292 (31%), Gaps = 22/292 (7%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
            I  Y +        + ++  ++     ++    GD D+  +    IR+ V       + 
Sbjct: 8   WIDRYLRHLREERRYSPHTVENYARDLRRLCEAVGD-DWSSVKVHDIRALVAKEHRQGAG 66

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + L+++R  F + +R+     NP L V  PK   +       + + +      + 
Sbjct: 67  SKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDLPGDE 126

Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
           +   + R   E    SGLR ++     +  +      ++          + +    +  L
Sbjct: 127 ALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDLPIGRHAVAAL 186

Query: 246 AMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
                 +        +  F+    +++ A          A   G+++    H +R   A+
Sbjct: 187 KAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDRRVHPHLLRHSFAS 246

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDS 345
              ++      +    G   +   + YT   D   L      +   +    S
Sbjct: 247 HLLESSGDLRAVQELLGHADISTTQVYTH-LDYQHLAKVYDAAHPRARRKPS 297


>gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
 gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697]
          Length = 316

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH-- 128
           +I +Y++      SLA N+  ++ +   +++      + +   +T   ++          
Sbjct: 16  IIRKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             P S  + L+ ++  F +    +Y+  +P   +E PK   +     T E++ +      
Sbjct: 76  IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242
               EG + R   E L   GLR S+ C   +  L     F     K      V +    +
Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           K +                ++  F+      ++        K  A K G+ K  S H  R
Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 310

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 79/281 (28%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHI----RSGV 123
            K+ I ++     + +L+  +   +E    +      D +      IT + I        
Sbjct: 6   FKFAIQDFLDDRKFKNLSPETLKGYEITLKEFHNYCTDNNLIDTSDITPRVIKNYLIHCQ 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----------RKTEGIRP 173
             R + P +    + ++++ F +    E        +   P              +  + 
Sbjct: 66  NERSNNPVTLNHKIRNLKIFFNYLEEIEIYDEKNNPAKPIPYLKEDVKIEVFTDYQIRQM 125

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-I 232
            T     + +       +       LL +G+R  +      +H+      +         
Sbjct: 126 LTYYRRLKTRDKAFWAYRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTIFGKKRIQ 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAG--- 281
            ++ L +  +K LA   +  E +F   +           M A      FK          
Sbjct: 186 RSIPLTEKLVKELAEFKVFCERYFGKLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNFRD 245

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V  SAH  R   A      G     L    G   ++    Y
Sbjct: 246 VRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRY 286


>gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
 gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ]
          Length = 295

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 88/284 (30%), Gaps = 26/284 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---VE 124
              L   +        L+ N+R ++ +   + +             I    I        
Sbjct: 4   FLDLFLAWLT--VEKGLSANTRSAYAADLGRYLDYLERLQRDTPDSIQPSDIAEFLGKER 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R   P S  + L+++R+L ++ + + Y   NP   +E P+   +     +  ++ +   
Sbjct: 62  ERGLAPRSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKKLPTFLSMAEVDRLLG 121

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  E  + R   E L  +GLR S+      + +   I   +   K      + +  
Sbjct: 122 ATHGSRSEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKERLIPIGA 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287
                +A       +       Q           M    F    K +A  AGV    S H
Sbjct: 182 AACHRVADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGVRTSISPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     GA    +    G   +   + YT    R RL
Sbjct: 242 TLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVT-RERL 284


>gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans
           568]
 gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568]
          Length = 303

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 93/283 (32%), Gaps = 21/283 (7%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
           +L+  +  + +       L+  +++S+      +    ++ G  ++  +    +R     
Sbjct: 7   SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEIGVTEWPLLDAAKVRQLAAR 66

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            K      SS    L+++R    W V Q  +  NP   +  P+      +    ++M Q 
Sbjct: 67  SKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMNQL 126

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
            +         + R   E +  +GLR S+      +H+           K      + + 
Sbjct: 127 LNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERKLPVG 186

Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              +  L      ++         F++N  ++++       F     K GV  +   H +
Sbjct: 187 RTAVTWLEHWLAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
 gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010]
          Length = 310

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129
              Y K       + N+  ++    +++           +  K     H  + +      
Sbjct: 15  FRRYLKLE--KGHSENTVDAYMHDIEKLSSYLKAEKVDVLDVKLDDLEHFAASISEIGIG 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             S  + L+ +R  +++ V   Y+  +P   +E PK+        +  ++          
Sbjct: 73  ARSLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLS 132

Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
             EG + +   E L   GLR S+     + +L  +   I+          V +    ++ 
Sbjct: 133 KWEGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEE 192

Query: 245 LAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
           L    + +             F+N     +  T   I  K  A  AG+ K+   H +R  
Sbjct: 193 LNYWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHS 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   + GA    + A  G ++V   E YT 
Sbjct: 253 FATALLEGGADLRSIQAMLGHESVVTTEIYTH 284


>gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
 gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC
 gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str.
           Rustic]
          Length = 305

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 102/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +++  + F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKELQPSVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    L    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289


>gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
 gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3]
          Length = 300

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESR 126
            ++ + +       L+  + ++++   D +     ++G   + +     +RS        
Sbjct: 9   AVARFLRHLGVERQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRA 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S    L+++R  F W V Q  ++ NP   +  PK      +    +D+ +     
Sbjct: 69  GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E +  +GLR S+     ++HL   +       K      + +    +
Sbjct: 129 LNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 188

Query: 243 KLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +      +  F  ++D        ++++A      F     K G+  +   H +R   
Sbjct: 189 AWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 249 ATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614]
 gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614]
          Length = 318

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 37/290 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +   +  Y         LA N+  S+     +        G      +T   + + +   
Sbjct: 9   VARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRL 68

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         + +SA + + ++R   ++AV     A +P  +V+ P       +     D
Sbjct: 69  REGDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLAD 128

Query: 179 MQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQK 228
           ++           +   + R   E L  +G R S++    V  L      ++       K
Sbjct: 129 VEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVEGTVLLRGK 188

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKA 275
            G    V +     + +    +                  F+N    +++          
Sbjct: 189 GGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQSAWAVLVR 248

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            A +AGV  + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 249 AAERAGVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 298


>gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803]
 gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803]
          Length = 298

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 93/279 (33%), Gaps = 26/279 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES--RKHTP 130
           +Y        L+ NS  ++     ++I             KI+ K I+  + S  +    
Sbjct: 11  QYYLKLE-RGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYSVSKDLNA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + ++ +R  F + + ++Y   NP   +E PK   +     +  ++ +  +      
Sbjct: 70  RSQSRLISGLRSFFSYLLFEDYRKDNPLDLMESPKIGRKLPDTISIAEVDKIIAAIDLSK 129

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
           +EG + R   E L   GLR S+     +  L     F   T K      V + +  +K +
Sbjct: 130 NEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKVTGKGDKQRFVPISEYTVKFI 189

Query: 246 AMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            +                     N    K+         K     AG+    S H  R  
Sbjct: 190 NLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVKKLTEVAGISKKVSPHTFRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT   + GA    +    G +++   E Y    DR  L
Sbjct: 250 FATHLLENGADLRAIQQMLGHESITTTEVYVH-VDRSHL 287


>gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
 gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293]
          Length = 311

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 22/281 (7%)

Query: 69  TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE 124
            T K L+ +Y        SLA  SR S+ S   +++      G   +       +     
Sbjct: 1   MTGKTLLRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLTL 60

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +      +  + ++ MR  F + V +EY   NP   V+ PK         + E+++ F
Sbjct: 61  RFEEGSDKHTIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAF 120

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +       EG + R  FE +  +GLR S++       L      I+          + L
Sbjct: 121 LNAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRVTGKGSKQRVIPL 180

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            D   K +                  +  F++     ++       FK  +  AGV+   
Sbjct: 181 GDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAGVDGKV 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   AT     GA    +    G   +   + YT   D
Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281


>gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M]
 gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M]
          Length = 313

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 36/292 (12%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123
             TL   +  Y         +A N+  S+     +  +   D    D  K+    +   +
Sbjct: 3   TLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFL 62

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +           +  SA + L ++R L ++A  +   A++   +V  P       + 
Sbjct: 63  VALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKS 122

Query: 174 WTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            T +++                   + R   E L  +G R S++    V  +     ++ 
Sbjct: 123 LTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVL 182

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWF 273
              K G    V +    ++ L    +                F+N    +++        
Sbjct: 183 LQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVL 242

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A +AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 243 QDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 379

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 22/346 (6%)

Query: 7   LPPFVTKERTRHGKIIY-YFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKR 58
           L  F+ + R+  GK  +  +R GHG+  + ++    + +F  A  +A    +        
Sbjct: 30  LTGFILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDP 89

Query: 59  EYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                 +K+  TL+     +Y    +      + +  F    + ++   G+    +I   
Sbjct: 90  LAERQVKKQVPTLEEFAHGKYL--PYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQA 147

Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172
            +       K      ++  + +  +R +F  A + +      NP   V   +      R
Sbjct: 148 EVIELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVVLFETNNGRER 207

Query: 173 PWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--K 228
             T+++  + K+    SE +Q +     LL  G R S+   +  +       S +    K
Sbjct: 208 YLTEDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSK 267

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           +G    V L    +++LA  P        N    +   + F   +     KAG+     H
Sbjct: 268 SGKARYVPLSTAALEVLASIPRLSPYVVPNPKTLQPFVSVFRS-WDTARKKAGLPDVRMH 326

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   A+   ++G + +E+    G   +   + Y+  ++   L  
Sbjct: 327 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAA 372


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans]
 gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 30/285 (10%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES 125
           +       + +      LA NS  ++               G           + +   +
Sbjct: 20  IDEFCDTLWLED----GLAKNSLEAYRRDLRLFAVWLQAERGKTLLAA-HADDVNAYFFA 74

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           R      +S+ + L  ++  ++ A+RQ  ++ +PCL +   K+     +  ++  ++   
Sbjct: 75  RHEVTKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALL 134

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228
           +        G + R   E +  SGLR ++        +  N              +    
Sbjct: 135 AAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFG 194

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
               + +E      + L +     +  F+      M    F    K  A  A +    S 
Sbjct: 195 EEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSP 254

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 255 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 298


>gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
 gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden]
          Length = 312

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 99/292 (33%), Gaps = 34/292 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125
           +  ++E+  +      ++ N+  S+ S    + +     +   I       K     +  
Sbjct: 5   EKYVNEFLTAIAAEKHISYNTYQSYMSDLLDLCKFFDCKNLALIEVSRDDLKDYVRLMHK 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180
           R++  S+  + +++++ L+K+  +   +A +P LS++ P+      +       ++    
Sbjct: 65  REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDT 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G +       L  SG+R S+     +  ++  + +   + +   I  +    
Sbjct: 125 AALDSSPDGLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRE 184

Query: 241 FMKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            + LL                        I +  F        +   +     K  +  A
Sbjct: 185 RIVLLNSSAIVSIQKYLEVYMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISA 244

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           GV+ +    H +R   AT   + G+    +    G  ++   + YT  A+  
Sbjct: 245 GVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296


>gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
 gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144]
          Length = 286

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q          +  T      ++  + + S +   ++  + +++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q    INP + +  PK++    + + +E+M    Q  +    +G + ++ 
Sbjct: 66  LRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
             + N            +              + AGV +   H +R   AT   + GA  
Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
 gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469]
          Length = 302

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 24/284 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV--- 123
           L    +EY         L+VN+  ++    +  +            ++T   +   +   
Sbjct: 3   LAQARTEYIAYVAVERGLSVNTLDAYTRDLEGYLFWLSGKKITSPNQVTRSDVEEYIGSL 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P+S  +   ++R   K+   ++    +P   +    R        ++E  ++  
Sbjct: 63  RDLGMAPASVERHTAAIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQEKAEELL 122

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                 S    + +   E L   GLR S+ C   V+ +      ++    G+        
Sbjct: 123 DQPFPNSPLGIRDKAILELLYGCGLRVSELCDLEVRGVLLEDELLRVFGKGSKERVVPVL 182

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                 ++      + L +        F+N    +++               G+     H
Sbjct: 183 GSAYRALKTYLFEARSLLLKHGQVSEVFVNARGGRISRQSVHKLVANYGRVVGIEGLHPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT   DR  +
Sbjct: 243 TLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTH-VDRSHI 285


>gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 323

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 33/291 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126
             +I  + +        A N+  ++    D     +    G         +   + + + 
Sbjct: 16  GAVIEAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHGGLMRADSDAIRAYLTSLSAE 75

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+  + L+++R L+++   +     +P   +E  ++K    +  +++++ +     
Sbjct: 76  GLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLLDLA 135

Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGT 231
              +              + R+  E L  +GLR S+         +          K   
Sbjct: 136 EAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGKGNK 195

Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V +     + L               G   F  +++   ++   F+   K  A + G
Sbjct: 196 ERLVPIGAAARESLDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLAARTG 255

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +     S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 256 ISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER 306


>gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis
           z3032]
 gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032]
          Length = 306

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRS---GVESRK 127
           I+ + +       L+  + +++E     I+  +G+     + +     +R+         
Sbjct: 15  IARFLRYLKVERQLSPVTLLNYERQLAAIVGLAGEAGLKSWAQCDAAMVRTLAVRSRRAG 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 75  LGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDL 134

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +HL   +       K      + +    + 
Sbjct: 135 NDPLAVRDRAMLEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLPIGRSAVA 194

Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +E F  ++         ++++A      F     K G+  +   H +R   A
Sbjct: 195 WIDHWLNLRELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 254

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 255 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 291


>gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4]
 gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2]
 gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2]
 gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4]
 gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23]
 gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2]
          Length = 293

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           LI  +     +  + +  + +++     Q+        G F+  ++  + IR  + S   
Sbjct: 2   LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +     + L+S+R  +K+ +RQ    I+P   ++ PK K        + +M +    
Sbjct: 62  KGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            ++ L +  I             FFI  + +++         K   +  A + K S H +
Sbjct: 182 ELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277


>gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 314

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH---T 129
             +Y  +    + + ++  +++                      + IR  +E   +   +
Sbjct: 30  FEKYLNAE--RNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEELGNKKLS 87

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  + L  +   +K+ +  + +  N   S+    K+  +     T+ +MQ   +    
Sbjct: 88  RATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLNLPDL 147

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247
             + R   E     GLR  +     ++++         T K      V + D  +  +  
Sbjct: 148 KPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVGDICLHAIKD 207

Query: 248 TPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
               +    +  D +          ++              KAG     S H +R   AT
Sbjct: 208 YINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLRHTFAT 267

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
              D G     +    G K +   + YT  
Sbjct: 268 HILDRGCDLRSVQEMLGHKNLSSTQIYTHV 297


>gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 323

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RDGAGGGLLGIDRAVLFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDLDTLAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDV 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 SRQPLSRQQFWALVKRYAAAAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC
           49188]
 gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188]
          Length = 307

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    + +         +  +    HIRS +++     
Sbjct: 6   AIENFLEMMSAERGAAENTLESYRRDLEAVAEALSARGVNLAEAGADHIRSAIDAMATEG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              +S  + L+++R  F++   + Y   +P  +V+ PK++    +  + E++ +      
Sbjct: 66  FAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233
                        +  +     E L  +G+R S+     V   + +   +    K     
Sbjct: 126 LETSEEAEPAERFKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCGKGSKER 185

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT-------KA 280
            V L     + L           G +           +       F  +          +
Sbjct: 186 MVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLS 245

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 AAAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
 gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768]
          Length = 334

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 98/293 (33%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 35  FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V++  +  +P   ++ PK+     +  ++E + 
Sbjct: 95  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQEWLN 154

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+     V  +  +  +   T K      
Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRKQRQ 214

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           V L    ++ L      ++T       F   +  +++  Q     ++ A + G   + S 
Sbjct: 215 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRHISP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A+    +      +    G  ++   + YTK      L   +  R+
Sbjct: 275 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321


>gi|167618213|ref|ZP_02386844.1| phage integrase family protein [Burkholderia thailandensis Bt4]
          Length = 448

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 112/366 (30%), Gaps = 26/366 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P    + T HG+      Y    G  R+ ++    E T   A   A       R+  +  
Sbjct: 29  PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGNDPS 88

Query: 65  RKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118
             K       T+K L +++ +         ++  +++   D+ I    G      +T +H
Sbjct: 89  AAKLAARMSPTVKELCTQFMEEYSRPRNKPSTVDTYQDQIDRFIVPMLGKLKVPDVTRQH 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I + +      P +A + L+ +R +F  A    Y           PK    G   +   D
Sbjct: 149 ITTLMRDLAKIPVTANRVLSCIRKMFNMAEVWGYRPDGSNPCRHVPKYPENGETRYIVND 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                  + + +           LA         R S+        +      I    + 
Sbjct: 209 ELARLYTYLDRADAEGLEHPTLTLAVRLQFEFSARMSEIRLLEWSWIDFENRRIVWPDSK 268

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV-NK 284
           T    +        L       +           ++     + +   +K    +A V + 
Sbjct: 269 TGDISKPMSEVAYQLLSNACRIDDSPYVCPAIFDSSIPLPESTYYNGWKRILKRANVVHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS-V 342
             HG+R  +AT  A++G      MA    KTV     Y    D  IR   +    +    
Sbjct: 329 GTHGIRHRAATDIANSGIPVKVGMALTAHKTVSMFMRYVHAEDDPIRAAAEKVANLRRDT 388

Query: 343 VDSDDP 348
           +D+  P
Sbjct: 389 IDNRAP 394


>gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246]
 gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246]
          Length = 305

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    L    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTS 289


>gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC
 gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC
 gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A]
 gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135]
 gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028]
 gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045]
          Length = 296

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q          +  T      ++  + + S +   ++  + +++
Sbjct: 16  RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M    Q  +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
             + N            +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
 gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis
           409-05]
          Length = 322

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV--ESRK 127
           LI +Y         L   ++ ++ S   Q      + G  +  ++TT  +RS +  ESR 
Sbjct: 21  LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178
           H  SS  + + ++R  F W    EY++ NP   +   K K        +           
Sbjct: 81  HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNNVD 140

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231
                     K+  + G +     E L  +G+R  +     +Q +  +      T K   
Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200

Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280
              V       K L+                    F+    ++++          +A  A
Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            V   S H +R  +AT   + GA   E+    G  +++  + YT  +
Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307


>gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
 gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2]
          Length = 327

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 81/292 (27%), Gaps = 34/292 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVES 125
            + +         L+  +  ++E    Q    +    G       +  I    +R+ + +
Sbjct: 28  AARWLAHLKSERRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVRAFMAA 87

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R+       S ++ L  +R   ++  R+    +    ++  PK      +P      +  
Sbjct: 88  RRADDIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVSAARNL 147

Query: 183 KSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                   + R  + +            SGLR S++     + +           TG   
Sbjct: 148 TEADIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITVTGKGN 207

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
              +      +L                +           ++     +  +      G+ 
Sbjct: 208 KTRMVPVLQGVLEAVQDYIAQCPYPLAPEKPVFVGARGGPLSPRIIQLTMERLRGALGLP 267

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              + H +R   AT     G     +    G  ++   + YT G D  RL  
Sbjct: 268 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDAERLMD 318


>gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
 gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b]
          Length = 295

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 24/280 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           I  + +       ++ N+R ++ S   Q        G  ++ ++T  HI   +E      
Sbjct: 6   IESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQAG 65

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
               S  + ++S+R+             +P L +E PK + +    W++ ++++      
Sbjct: 66  RASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVP 125

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + R   E L  +G+R S+     +  LQ  +  ++ +  G    +       +
Sbjct: 126 TSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSVAQ 185

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                 I +             F+N    +++   F    K +A  AG+ K  + H +R 
Sbjct: 186 SFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPHVLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   + GA    +    G   +   + YT   ++ RL
Sbjct: 246 SFATHLLENGADLRAIQQMLGHADLATTQVYTH-VNKSRL 284


>gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8]
 gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8]
          Length = 301

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 25/283 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           + LI  +  +      L   +R ++ S   ++        G    R      + + +   
Sbjct: 7   EQLIERFSDAVWLEDGLGEKTRQAYASDLYRLSGWLEQQAGAPTLRSARRTDLLAWMSRG 66

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+A + L+ +R  +++ +R+  +A +P L ++ P+         T+ D++   
Sbjct: 67  LSDGLKTSTAARRLSGVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEADVESLL 126

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
           +          + R   E L   GLR S+     V  +      ++ Q  G     V L 
Sbjct: 127 TEPDPELPVELRDRAMLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLG 186

Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           +  +  L                    F  N    M    F    +  A + G+  + S 
Sbjct: 187 EEAVDWLLQYMRQARGELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   + GA    +    G   +   + YT  A + 
Sbjct: 247 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR 289


>gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESR 126
            ++ + +       L+  + ++++   D +     ++G   + +     +RS        
Sbjct: 9   AVARFLRHLGVERQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRA 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S    L+++R  F W V Q  ++ NP   +  PK      +    +D+ +     
Sbjct: 69  GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E +  +GLR S+     ++HL   +       K      + +    +
Sbjct: 129 LNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 188

Query: 243 KLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +      +  F  ++D        ++++A      F     + G+  +   H +R   
Sbjct: 189 AWIEHWLDLRGLFGTDDDALFLSKLGKRISARNVQKRFAEWGIRQGLNSHVHPHKLRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 249 ATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str.
           Wilmington]
 gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC
 gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington]
          Length = 305

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 28/284 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKH 118
             +++ LI +++K      + + N+ I++ +     +     +          + +  + 
Sbjct: 3   DISIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRL 62

Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           IRS +  RK+   T SS  + L++++  +K+  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +D+                  + +     +  +GLR S++      HLQN  F     K
Sbjct: 123 VDDVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLHLQNLEFIKIIGK 182

Query: 229 TGTIITVELPDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +               +L       E  F     +K+  + F+          G
Sbjct: 183 GSKERIIPWLPFARNLITKYLGILPYKLDENEPIFRGKHGKKLQPSVFNRELIKLKRVYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    +AH  R   A+   + GA    +    G K++   + YT
Sbjct: 243 LPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYT 286


>gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis
           ATCC 14580]
 gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC
 gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC
           14580]
 gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580]
          Length = 304

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127
           L  EY +     + +  + + + S  +   R     G   +  +T   +R        + 
Sbjct: 10  LFIEYLQIE--KNYSKYTIVGYISSIEDFERFLHVQGIKGFEDVTYPDVRIFLTEAHEKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+     +   +++     +   
Sbjct: 68  LTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEVSD 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + +   EFL  +G+R S+ C      L   + ++    K      +       
Sbjct: 128 LSTPLGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYIPFGSFAR 187

Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
           + L +                    F+N     +              K    ++   H 
Sbjct: 188 EALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGTLHIHPHM 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  +
Sbjct: 248 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 285


>gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 310

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRS 121
           L  +I ++ +      S + N+  S+      +I        G+ +     K++   +RS
Sbjct: 3   LGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR     +A    + L+ +R  FK+      +      S+ RP ++    +  +  +
Sbjct: 63  WLTSRYARGVNARSNARALSVIRNFFKYIKNNYNIDNEAVFSLSRPIQRRTLPKALSIPN 122

Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           ++                  +       L  +GLR S++    V  + N      T K  
Sbjct: 123 IKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESLI-VTGKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAG 281
               V +     K +           IN++ Q         K+  T  +   +       
Sbjct: 182 KQRQVFILPVVKKCIQEYVKTCPYLGINDEAQYLFLGVRGKKLGRTYVANRLQKIRRILN 241

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +    S H  R   AT           +    G  +++  + YT 
Sbjct: 242 LPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 286


>gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 309

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 34/289 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHTPS 131
           +  + ++      ++ N+  S+++    +       +   + T    +++ +        
Sbjct: 7   VEIFLEAITAEKHISYNTYQSYKTDLLGLCEFVSKKNLLLVDTSINELQNYIRLLYEKGY 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            A    + +++++  + +  R   +  +P L ++ PK      +  + E++ +       
Sbjct: 67  KANTVLRKISAIKNFYGFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDVAAL 126

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +G +       L  SG+R S+        +   +     +     I  +     + 
Sbjct: 127 DGSPDGRRLNAMVNILYSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGKANKERIV 186

Query: 244 LLA--------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           LL                        + +  F        +   +     K  A  AG++
Sbjct: 187 LLNLSAVESIKKYIEIYKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDLAMNAGID 246

Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +    H +R   AT   + G+    +    G   +   + YT  A+  
Sbjct: 247 ITKISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEK 295


>gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
 gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929]
          Length = 314

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
               +Y +S      + ++  +++    +  R   +         ++ +  + + +    
Sbjct: 12  QWFLKYLQSD--RHYSTDTIQAYQQAIAEFTRFLAEIPSERKPLTQVDSFDVEAFLSDLY 69

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
               +       +++++  + + V+   +A NP   V          R   + +M+    
Sbjct: 70  ERKYARNSIAQKVSALKSFYAFLVKNTVIANNPFEYVHLKSNHRRLPRFLYQNEMRALFQ 129

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +       G +     E L  +G+R S+     +  +  +  +I  T K      V  
Sbjct: 130 GARQNPNHQLGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKGNKQRYVPF 189

Query: 238 PDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
            +   + +                      F+N+  + + +            ++ +   
Sbjct: 190 GEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIVKQSSLTTK 249

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R   AT   + GA    +    G  ++   + YT    +  L     +      
Sbjct: 250 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYKKYFPRNN 308

Query: 344 DS 345
           DS
Sbjct: 309 DS 310


>gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
 gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075]
          Length = 311

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 92/279 (32%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           L  ++  Y         LA N+  ++      I          G     ++      +  
Sbjct: 16  LHGMVDVYLDHLAGERGLARNTLAAYADDLADICGFLHDNGVQGWEQVDELHMVAYLAHA 75

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +S  + L++ R L  + +R+E ++ +P  ++  PK+        ++E+M +  
Sbjct: 76  AKEGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKTAGLPHFLSQEEMLRLL 135

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQ 227
                    G + R   E +  +GLR S+    GV  +Q  I              +   
Sbjct: 136 ETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGCLLVRGKGAKERLVPLH 195

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +       +   G  + L       +T F+N    K++              AG++   S
Sbjct: 196 QVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWKILAKHVAAAGIDHHVS 255

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT   + GA    +    G   +   + YT 
Sbjct: 256 PHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTH 294


>gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
 gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87]
          Length = 299

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125
            ++++ +Y         L+VNS  S+E    ++I              I  + ++  +  
Sbjct: 3   WEYILKDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYE 62

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + ++ ++  F + + ++Y   NP   +E PK   +     + E++ +  
Sbjct: 63  IAKELNSRSRARIISGLKSFFNYLIFEDYRKDNPTDLIEAPKIGRKLPETISVEEIDELI 122

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238
           +       EG + R   E L   GLR S+     +  L     F   T K      V + 
Sbjct: 123 AAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGDKQRFVPIS 182

Query: 239 DGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           D  +K + +                     N    ++         +  A KA + K  S
Sbjct: 183 DYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEKANIRKKIS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G +++   E Y  
Sbjct: 243 PHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMH 281


>gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 90/302 (29%), Gaps = 27/302 (8%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG--- 107
                      +      ++       + +      LA N+  ++        +      
Sbjct: 9   AADNDTDAASPALLASRASIDVFCDALWLE----RGLARNTLDAYRRDLALFSQWLAATH 64

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D          +   + +R     +S+ + L+  R  + WAVR+   + +P L +   K+
Sbjct: 65  DAPLDSADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                   ++  ++        G+    + R   E +  SGLR S+        +  N  
Sbjct: 125 GARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271
            ++          V   +     +                    F+      M   QF  
Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A +A V  + S H +R   AT   + GA    +    G   +   + YT  A R 
Sbjct: 245 IIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303

Query: 330 RL 331
           RL
Sbjct: 304 RL 305


>gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
 gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118]
          Length = 323

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLARQLPPVQAADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANTPVAAVDGQVPLFIDA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
 gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM
           2581]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 87/287 (30%), Gaps = 23/287 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             LI  +          + N+  ++    +    +        +                
Sbjct: 8   SALIDAFLDGLWLERGASDNTLAAYRHDLNTWQARLAGLGATLLAPPPRALPDWLDERRE 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +   S  + L+S+R  + WA+ +  +  +P   ++ P+          + ++++    
Sbjct: 68  AGYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLEA 127

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
               +    + R   E L  +GLR ++        L      ++ +        V L + 
Sbjct: 128 PDVDTELGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVPLGEE 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHG 288
            +  L++         + +  +                F    KA A  AG+++S   H 
Sbjct: 188 AVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSLSPHT 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +R   AT   + GA    +    G   +   + YT  A      +  
Sbjct: 248 LRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHA 294


>gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2]
 gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2]
 gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125
           +I +Y++      SL++N+  ++ +  D+++           D     +      +G+  
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQR--FAAGLHD 73

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S 
Sbjct: 74  IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +  F     K      V +   
Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287
            +  + +    +    +    +             +        K  A KAG+ K  S H
Sbjct: 194 AINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum
           SS9]
 gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9]
          Length = 292

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 98/279 (35%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           I  +  +      L+ N+ +S+ +   ++ R S +  YR +T      +  +  +     
Sbjct: 2   IERFLDAMWMERGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQRYQQWLFDADF 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R L+++  R++    +P   +  P+      +  T+E +         
Sbjct: 62  KQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALLDAPDT 121

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
                 + +   E L  +GLR ++     +++       ++   K G    V + +  + 
Sbjct: 122 NNPIELRDKAMLELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKERLVPMGENAID 181

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            +                    F +   ++M    F    K  A  AG++    S H +R
Sbjct: 182 WIEEFIDSGRPLLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT  A   
Sbjct: 242 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 280


>gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus
           ATCC 19977]
 gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus]
          Length = 315

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 92/285 (32%), Gaps = 36/285 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128
           I  Y         +A N+  S+     +  +   D       ++    +   V + +   
Sbjct: 12  IQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRKIDRLAEVCETDVSDFVVTLRRGD 71

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + SSA + L ++R L ++A  +     +   +V+ P       +  T E ++
Sbjct: 72  PANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSLTVEQVE 131

Query: 181 QFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
              +             + R   E L  +G R S++    V  +     S+    K G  
Sbjct: 132 ALLNAAGGGGSDGPLDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVLLWGKGGKQ 191

Query: 233 ITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKA 280
             V +    ++ L    +                 F+N+   +++           A +A
Sbjct: 192 RLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQVLADAAERA 251

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++   S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 252 KISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 296


>gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118]
 gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118]
          Length = 306

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   I   + +      L+ N+  ++          +  +            +     +
Sbjct: 13  SIDAFIDALWLEE----GLSKNTLAAYRRDLTLYGAWLQPQHKALPATLEHDLNGYFAAQ 68

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+A + LT  +  F+WA+R+  ++ +P L ++  K+     +  ++  ++   +
Sbjct: 69  HSATKASTANRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQVEALLA 128

Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
              E    G + R   E +  SGLR S+     V ++  +   ++               
Sbjct: 129 APDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLVPFGE 188

Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                    +      +     T     T         M+   F +  K  A  AG+   
Sbjct: 189 VASLWIKRYLAQARPELLAGKQTEDLFVTHRGATPGTAMSRVMFWMIVKKYALSAGITAP 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            S H +R   AT   + G     +    G   +     YT  A R RL + +++    
Sbjct: 249 LSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVA-RERLKVLHAQHHPR 305


>gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 286

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q          +  T      ++  + + S +   ++  + +++
Sbjct: 6   RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M    Q  +    +G + ++ 
Sbjct: 66  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
             + N            +              + AGV +   H +R   AT   + GA  
Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270


>gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str.
           8401]
 gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC
 gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401]
          Length = 298

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   +       ++G   +++     +R+     +H  
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRHKG 67

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217]
 gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217]
          Length = 303

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 28/291 (9%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHI 119
           K   T   +I  +  +      L+ N+  S+ +      R         +     T +  
Sbjct: 5   KSSVTADPIIDVFLDALWSSKGLSNNTLASYGTDLRHFQRYLAAQQLNLLDASQETVRQY 64

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +  + +    SS+ + ++S+R  + + +  + +AI+PC  +  PK         ++ ++
Sbjct: 65  LAWRQEQGFAKSSSARLMSSLRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAEV 124

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
               S  +       + +   E L  +GLR ++     +  +      ++          
Sbjct: 125 DALLSEPAADDPIEIRDKAMLELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERL 184

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                     +   L     +LL                       F    K  A +A +
Sbjct: 185 VPLGELAVAEVDTYLSLARSELLKGKQSEVLFPSKRGTMM--TRQTFWHRIKHYALRASI 242

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               S H +R   AT   + GA    +    G   +   + YT  A + RL
Sbjct: 243 ATELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARL 292


>gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC
           824]
          Length = 323

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 88/291 (30%), Gaps = 41/291 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121
              +  +R  +++    +++               + D   I    I++           
Sbjct: 16  KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 75

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + R++   S  + + ++R  F +   +++ +  NP   +E+PK         T    
Sbjct: 76  YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 135

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             F S                  L  G+R S+ C   +  ++N++ SI  +         
Sbjct: 136 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISIIGKGDKERTVYL 195

Query: 237 LPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284
                  +         L      ++  FI+    +++        K     + +     
Sbjct: 196 NDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINKL 255

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           + H +R   AT    AG     L    G   V   + YT    DR+R    
Sbjct: 256 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 306


>gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
 gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602]
          Length = 303

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 93/279 (33%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESR 126
            +  + +  H    L+  +  ++    + +I    + G   ++++    +R   +  +  
Sbjct: 11  AVEAFLRYLHVERQLSPLTTTNYSRQLEALIAISGEIGISHWQQLDAPKVRMLLARSKRA 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              PSS    ++S+R    W VRQ  ++ NP   +  P+      +    +++ +     
Sbjct: 71  GLGPSSLALRMSSLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLLDID 130

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                  + R   E +   GLR S+      +H+      ++   K      V +    +
Sbjct: 131 LNDPLSVRDRAMLEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKERKVPIGRTAV 190

Query: 243 KLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             L      +  F   +D         +++A      F     K GV  +   H +R   
Sbjct: 191 IWLEHWLERRADFNPQDDAMFLSSKGSRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 251 ATHVLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288


>gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 289

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127
           + ++  Y+        + N++  + SYF       G+ +  K+TTK    +I   ++S+ 
Sbjct: 11  EEVLRRYKNLLIQKRYSQNTQDIYCSYFKDFCMYFGEEELEKLTTKQINSYILDLIKSKN 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S   Q + +++  F     +          + RP+++ +  +  +K +++       
Sbjct: 71  ISISQQNQRINAVKFYF----EKVLGREKQYYELHRPRKENKLPKVLSKNEVKSILVST- 125

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  + +     +  +GLR S+        + +    I                   L  +
Sbjct: 126 DNIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISLLSENLLKLL 185

Query: 248 TPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
               KE        +     K + T  +   K  + KAG++K  + H +R   AT   + 
Sbjct: 186 RQYYKEFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVTPHMLRHSFATHLLEQ 245

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           G     +    G ++    E YT  + +         +I + +D 
Sbjct: 246 GTDLRYIQELLGHESSKTTEIYTHVSKK------AIDKIKNPIDE 284


>gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
 gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256]
          Length = 291

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 19/275 (6%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             LI +  +S      L+ N+   +    ++I  +   G   +       +   V +   
Sbjct: 3   DELIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEAGGHTWLDAEAADLADAVYAADE 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             SS  + L++ + L+ W    E    NP   ++ PK+  +     T+  ++   +    
Sbjct: 63  KHSSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDT 122

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTII 233
               G + +   E +  +GLR +++ +  +  L  N   I+                 + 
Sbjct: 123 DTPHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVY 182

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
            VE      + L +     +  F++  +  ++     +  K  A  AG+   S HG+R  
Sbjct: 183 WVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGITSLSPHGLRHA 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AT   + G     +    G   ++  + YT  A+
Sbjct: 243 FATHLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277


>gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
 gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSG---V 123
           L   +  + +       L+  + +++    D I+  +G+             IRS     
Sbjct: 6   LSAAVERFLRYLGVERQLSPITLLNYRRQLDAIMTLAGESGVASWQQCDAAVIRSWAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  ++ NP  +V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT----- 234
                     + R   E +  +GLR S+     ++HL   +       K           
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKERRLPIGR 185

Query: 235 --VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             V+  + ++ L  +     +  F++   ++++       F     K G+  + + H +R
Sbjct: 186 SAVQWVEHWLDLRGLFGAEDDALFLSKLGKRISTRNVQKRFAEWGIKQGLNSHVNPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 305

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
             +++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DISIQELINKWQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCNNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPITKNLITKYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    +    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289


>gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 366

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 104/349 (29%), Gaps = 30/349 (8%)

Query: 4   SLRLPPFVTKERTRHGK--IIYYFRKGHGRRIR--LPYPHESTFIPAY--MSALTGSTPK 57
             R    +  E T + K   +YY R     ++R      +       Y     L      
Sbjct: 6   KTRYKNVIYLETTTNNKPDKVYYIRYRENGKLREIKVGKYSEGIRENYCNQKLLETVNAI 65

Query: 58  REYINSP------RKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFD 110
           R     P      ++K  T   ++++Y KS    +     ++  ++S         G  D
Sbjct: 66  RLGEQPPIINATHKRKIVTFDEIVTKYFKSKELHNKTNEQTKNRYKSQLK---EYIGSKD 122

Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRK 167
              IT   I +       +  P +  Q++  ++ ++ +A+    +  +NP   ++  K  
Sbjct: 123 IYSITKNDILAIQTDMAQSRAPKTVNQYIQFIKAVYNYAIAEDLFSGVNPVKGIKEQKID 182

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +  R  + ++++       E     L     L +G R         + L  N   I   
Sbjct: 183 NKRERFLSIDEIKALIEEVKENEDLYLFTLLSLSTGGRLGTIMAIAKKDLDFNNNMITLN 242

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN- 283
                 T         L  +          N+    MN            TK    G++ 
Sbjct: 243 DIKNEDTYGGFFDNT-LKEILIKRTANLKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDA 301

Query: 284 ------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                    H +R   A+  A  G     +      K + Q   Y K A
Sbjct: 302 DDRKNRVVIHTLRHTFASQLAIKGTPIFTIQKLLNHKDIKQTLRYAKLA 350


>gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
 gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138
            + +  +   +    +             +        +   + +    ++ ++  + ++
Sbjct: 20  KNYSAYTIKFYRLDLEDFFAFLTAQGIASLDEVGYPAGRLYLTMLHEHGYSRATVARKIS 79

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           S+R  FK+ +R+  V  NP   + +PK+     + + +E+M+Q  +          + R 
Sbjct: 80  SIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEMEQLFAACEGDDALSRRNRA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------IITVELPDGFM 242
             E L  +G+R S+     +Q +     +I  +  G                 +      
Sbjct: 140 LLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERIVLFGHFAGEAVSDYMAHAR 199

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           K L          F+N     +              KA +      H +R   AT   + 
Sbjct: 200 KTLMRGKEDHPYLFVNARGGALTDKGVRYILNEMIKKAALTGKIHPHMLRHTFATHLLNH 259

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G +++   + YT  
Sbjct: 260 GADLRTVQDLLGHESLSSTQVYTHV 284


>gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY]
 gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42]
 gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY]
          Length = 303

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 23/273 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139
            L+ N+  ++        +                 H++    +R      +SA + LT 
Sbjct: 25  GLSRNTLAAYRRDLTLYAQWLAQQNPPLALDATAEHHLQGYFAARHAQTRATSANRRLTV 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  F WA+R+  +A +P + ++  ++     +  T+  ++            G + R  
Sbjct: 85  LRRYFHWALRERRIAADPTVRLQAARQPLRVPKTLTQAQVEALLHAPDDATPLGLRDRTM 144

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT------ 248
            E +  SGLR S+       HL      ++    G     V   +   + L         
Sbjct: 145 LELMYASGLRVSELVTLKTFHLGLAEGVLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRG 204

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                   +  F+      M+   F +  K  A  AG+    S H +R   AT   + GA
Sbjct: 205 AILGGQQTDDLFVTQRGAAMSRVMFWVIVKKCAQAAGITAPLSPHTLRHAFATHLLNHGA 264

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    G   +     YT  A      +  
Sbjct: 265 DLRVVQLLLGHADISTTTIYTHVARERLKALHA 297


>gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71]
 gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71]
          Length = 312

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 24/277 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130
           EY +S     L+ ++  +++                D  ++   H+R  +     R   P
Sbjct: 20  EYLRSV--RRLSPHTVAAYQRDLGSFRAFCDAQSLQDCDEVQESHVRQWLAQGHRRSLAP 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S  + L+++R  F+W         NP L+V+ P+++ +       + +  +    +E  
Sbjct: 78  NSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADAEDP 137

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
              +     E    SGLR  +     +  +         T K     TV +    +  + 
Sbjct: 138 LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGKGSKTRTVPVGSAAIAAID 197

Query: 247 MTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                +     ++D+         ++++        +  A + G+  +   H +R   A+
Sbjct: 198 AYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAERNGLGRDVHPHMLRHSFAS 257

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              ++      +    G   +   + YT   D   L 
Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH-LDFQHLA 293


>gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
 gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2]
          Length = 305

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127
           L  EY +     + +  + + + S  +   R     G   +  +T   +R        + 
Sbjct: 11  LFIEYLQIE--KNYSKYTIVGYISSIEDFERFLHVQGIKGFEDVTYPDVRIFLTEAHEKG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+     +   +++     +   
Sbjct: 69  LTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEVSD 128

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + +   EFL  +G+R S+ C      L   + ++    K      +       
Sbjct: 129 LSTPLGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYIPFGSFAR 188

Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
           + L +                    F+N     +              K    ++   H 
Sbjct: 189 EALDLYLQNGRRILLLKAKEPCPFIFLNQRGGPLTPRGVRYILGELVKKTSGTLHIHPHM 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + GA    +    G   +   + YT  +
Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286


>gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 308

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 95/288 (32%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 5   FTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++    +  +  +    +   K      V
Sbjct: 125 DTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQRLV 184

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 185 PLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292


>gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 22/279 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L + I E+ +      L+  + + +E+   +  R+ GDFD   I  K I   + S   + 
Sbjct: 4   LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--------- 181
                  T++  L+ WAV   Y  ++    ++ PK +   I P+T++ +           
Sbjct: 64  KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123

Query: 182 ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                     ++    G + R     LL +G+R S+ C   V+ ++ +   I  + +   
Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIHGKGSKDR 183

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
              I+          +      ++  F       ++     +  +    +AGV +   H 
Sbjct: 184 LVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPHR 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            R   A      G     L A  G +T+D    Y   A 
Sbjct: 244 FRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQ 282


>gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
 gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella
           adiacens ATCC 49175]
          Length = 393

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 117/358 (32%), Gaps = 32/358 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIP---AYMSALTGSTPKR 58
             R+   +   + ++G++ Y F+   G   +                A  +AL     + 
Sbjct: 3   KKRIDDRIKPYKKKNGQVYYQFKIYYGTNPKTGKKQYTTRRGFESVLAATTALQRLEVEL 62

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTK 117
                  K+  T + L +E+  +     +  ++ + +   +   I+   GD+    IT +
Sbjct: 63  MDTGLVVKQKFTYRELYNEWLVTYQ-KRVRPSTFQATVTYFKKHILPAFGDYYIDTITIQ 121

Query: 118 HIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             ++ V       P S   +    +++FK+A +   +  NP   V+ PK           
Sbjct: 122 DCQAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIEKNPMSLVDLPKSGDFKDDKLKY 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
            D +    F       +  + F     Y+GLRC ++       +     SI   KT    
Sbjct: 182 YDRETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFALTWNDIDFRNHSISVNKTVARS 241

Query: 233 ---------------ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274
                           T+ +     +L++        +   F N +    ++     W  
Sbjct: 242 MEDKYISQTKTKNGMRTIRINGSLERLISEWKELSGNETYVFQNRNNSFYSSNTAVYWLN 301

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                    + + HG R   A++ A+AGA   ++    G   +      YT   +  +
Sbjct: 302 QILEGTNFPRITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359


>gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
              + ++          A N+  ++++     +           G     +IT   +R+ 
Sbjct: 7   SSALGDWLDHKRALNGAASNTITAYQTDLLGFLNFMTSYYSGAQGLGPISRITVSDMRAW 66

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + S +    +A    + L++++  ++W   +E       LS   PK + +  RP   +  
Sbjct: 67  MASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDAA 126

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++       +          K G  
Sbjct: 127 RAMIDTVQLQAGEPWIAARDMAVVTLLYGCGLRISEALGLIPADVPLPATLRIIGKGGKE 186

Query: 233 ITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             V +        + +++         +  F  +    +      I       + G+  +
Sbjct: 187 RLVPVIPAARTAVNAYLEACPHPMDADQPIFRGSRGGPLYPRAIQIVMANARMQLGLPAT 246

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYT-AVDTARLM 294


>gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
 gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548]
          Length = 299

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 29/286 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           L  +Y  +     L+ N+  ++ S  ++        G  ++ ++  + I   +++ +   
Sbjct: 8   LFIDYLVTE--RGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDLG 65

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +  + L ++++L ++   +  +  +    ++ PK         ++ ++  F   + 
Sbjct: 66  RETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFP 125

Query: 188 EG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------- 231
                    + R   E L  SGLR S+  R  +  +  +   ++    G+          
Sbjct: 126 ASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGKV 185

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                         LLA         F++   + +N        K  A +AG++K    H
Sbjct: 186 ALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKNIHPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   A+     GA    +    G   +   E YT   D  RL  
Sbjct: 246 TLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTH-IDSNRLAA 290


>gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
 gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5]
          Length = 320

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 90/288 (31%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS 121
               ++       + +      LA N+  ++        +      D          +  
Sbjct: 27  ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIG 82

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            + +R     +S+ + L+  R  + WAVR+ + + +P L +   K+        ++  ++
Sbjct: 83  YIAARSDGKATSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVE 142

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                   G+    + R   E +  SGLR S+        +  N   ++          V
Sbjct: 143 ALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 202

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+      M   QF    K  A +A V  +
Sbjct: 203 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAH 262

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
 gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606]
          Length = 293

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 95/275 (34%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           I+E+     +  + +  +  ++           G+ D    ++ + +  IR  +ES    
Sbjct: 3   INEFLNYLKFERNRSDLTIKNYGEDLRAFEEFYGNLDSRLSWKSVDSDVIRDWMESMMDK 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + L+++R  +++A+ ++ V  NP   V  PK+     +   + +M +     
Sbjct: 63  GNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMDRLLDAE 122

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                 E  + R        +G+R S+        +  +      T K      +   + 
Sbjct: 123 SWTESFEDVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRNKQRVIPFGEE 182

Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
            +  L      ++       +        Q+M ++Q     K   +K      ++ H +R
Sbjct: 183 LLVTLRDYMKCRDKEVNRQSEALFVSTKGQRMTSSQVREGVKRNLSKVCTLKKRTPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 243 HTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 308

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
              L  ++         LA  +  ++ES   + I      G  +   IT + +   + + 
Sbjct: 5   FTRLTEQFLIHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAAL 64

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA    + L S+    ++A+ Q  V  +   +V+ PK  +      T +++ +  
Sbjct: 65  DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124

Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              + G        + +   EF+  +G R S++  A +  +  +    +   K      V
Sbjct: 125 DTAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLV 184

Query: 236 ELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            L     + +                     +   F+N   ++++        KA   +A
Sbjct: 185 PLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERA 244

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 GITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 292


>gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10]
          Length = 308

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+      ++    + G   ++ +    +RS V   K   
Sbjct: 17  VEAFLRYLSIERQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAG 76

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V Q  +  NP   V  P+      +    +++ +  S   
Sbjct: 77  LHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDL 136

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+   +       K      V L    + 
Sbjct: 137 NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVT 196

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F+ N  ++++A      F     K GV  +   H +R   A
Sbjct: 197 WLQHWLALRELFEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFA 256

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 257 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 293


>gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC
 gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus]
          Length = 298

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 23/276 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             +  +     + + ++  S++    Q  +        ++ T   R       +      
Sbjct: 6   EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHL-QLNTFEYRDARNYLSYLYLNHL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + ++++R L+++ +  +   INP + +  PK++    +   +E+M+   +   +
Sbjct: 65  KRTSVSRKISTLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEALFTTVEK 124

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
            +    + R+  E L  +G+R S+      Q +           K      V       +
Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFS 293
            +       +     N            +              + AGV     H +R   
Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    + +  G   +     YT  +++ 
Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|162147966|ref|YP_001602427.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 304

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 26/298 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH--- 128
              + +        A N+  ++    D     +           +  +R  + S      
Sbjct: 5   AEAFLEMLAAERGAAANTLKAYGRDLDDFAAHARQAGRSLHDADSALLRDYMGSLARAGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +  + L+ ++    +  R+     NP   ++ P+      R  T++++    +    
Sbjct: 65  SPRTQARRLSCLKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALLAACVP 124

Query: 189 GSQ---------PRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQKTGTI 232
                        R A E L  SGLR S              Q L       + +     
Sbjct: 125 PPDGGAARRWLVARAALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGRERLVPLS 184

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
                    +            F      + +    F       A +AG++    S H +
Sbjct: 185 AAARAAAEALIAHDGPRRSPYLFPGRAPDRPLTRQGFDRILHDVALRAGLDPARLSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346
           R   AT     GA    L    G   +   + YT   A+R+R  ++    ++   D +
Sbjct: 245 RHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGGDGE 302


>gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 308

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           +  + +        + N+  ++            D                  ++SR   
Sbjct: 10  VDAFLEMMSASRGASQNTLDAYRRDLSDASEFLADKGGLVGANSENLSAYMRDLDSRGMA 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            S+A + L+S++  FK+ + +     +P   ++ P+         +KE++    +     
Sbjct: 70  KSTAARRLSSLKSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALINAADGD 129

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMK 243
                + R   E L  +GLR S++C   +  L     +  I   K        L      
Sbjct: 130 EPSDIRDRCILELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRLTPLGKPARD 189

Query: 244 LLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285
            L                     K  F            + +   +  ATKA +     +
Sbjct: 190 ALEQWFSVREKFLPKNETRKIADKYVFPSRGKTGHFTRRRLAQILENLATKAAISPKRVT 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341
            H +R   AT     GA    +    G   +   + YT    D ++  ++ +  +S+
Sbjct: 250 PHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHPLSN 306


>gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 326

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 88/291 (30%), Gaps = 41/291 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121
              +  +R  +++    +++               + D   I    I++           
Sbjct: 19  KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 78

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + R++   S  + + ++R  F +   +++ +  NP   +E+PK         T    
Sbjct: 79  YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 138

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
             F S                  L  G+R S+ C   +  ++N++ SI  +         
Sbjct: 139 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISIIGKGDKERTVYL 198

Query: 237 LPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284
                  +         L      ++  FI+    +++        K     + +     
Sbjct: 199 NDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINKL 258

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           + H +R   AT    AG     L    G   V   + YT    DR+R    
Sbjct: 259 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 309


>gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 369

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 109/341 (31%), Gaps = 22/341 (6%)

Query: 10  FVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + K  ++   + Y  +     G   +            +         +    +     
Sbjct: 6   GIQKRISKKNVVSYRVQIRESDGFPPKSKTFPTLQEAKDWQKQEKARRRQGYGSSDLMTG 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             TL  LI  Y               + + + D    K G +   KI++  I    +   
Sbjct: 66  KKTLIDLIDRYETIILPT--KPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELA 123

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177
                   K + ++  ++L ++  +F + + +  ++  NPC  V +        R   + 
Sbjct: 124 EGVTSKKTKRSHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAEN 183

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTII 233
           +  +            L    +L   +G+R  +        +  +  +I  K  K G   
Sbjct: 184 EFTRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIILKETKNGKQR 243

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           TV +    ++LL      +           ++         +     +AG+ N   H +R
Sbjct: 244 TVSIVGEALELLRSHYQKRNPNTPYVFPAKKRFGKICIRKAWDEALKRAGIQNLRIHDLR 303

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               T +++ GA+  EL A  G +T+     YT   ++ ++
Sbjct: 304 HTFCTYASETGASILELAAAMGHQTLQMVNRYTH-MNQKKI 343


>gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 117/358 (32%), Gaps = 31/358 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAY-----MSALTGSTPKREYI 61
            +    +++G+  +  R  +  R     L      +   A        AL          
Sbjct: 43  GLHLRVSKNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARDKDPAAE 102

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               +   T +   ++ Y   A        +    ++    ++    G    + IT + +
Sbjct: 103 RGKVRADLTFEEFSTQHYLPHAKAHKQ---TWDDDKNQIERRLNPILGKLRLQAITPRDV 159

Query: 120 RSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                 E  + T  +A   L +++ +   AV+   +  NP    E+ K      R  +KE
Sbjct: 160 AMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKE 219

Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
           ++ +F       +      A   LLY+G R  +      ++++       +   K G   
Sbjct: 220 ELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSR 279

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKATKAGVN 283
           TV L     +++      K+        + +  ++              F+     AG++
Sbjct: 280 TVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGID 339

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
               H +R   A+++  +GA  + +    G + +   + Y    AD ++   +    +
Sbjct: 340 NFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEM 397


>gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 380

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 112/372 (30%), Gaps = 52/372 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YY+  G   G+R ++      T   A  +     T        P+    T+ 
Sbjct: 6   RKRGSSWYYYYDAGSVDGKRNKIERKGGKTKKEALNALNEALTKLGSGYVEPK--KITVH 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VESRKH 128
             ++++ ++    +  +N+   ++  +   +    G     ++   H+       + +  
Sbjct: 64  EYMTDWVENYIKENRKLNTYNRYKEIYNRHLKPYIGHLGLSEVKPIHLDQMLLGEKKKGL 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+      ++   F  AV+ + +  NP   ++RPKR          E++ Q       
Sbjct: 124 SGSTLQNIYGTLNSAFNRAVKLQIMYDNPLRFIDRPKRDKFVASTLAVEEIGQLFDALDT 183

Query: 189 GSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKT 229
                       + +L  GLR  +      +++  N   I                  KT
Sbjct: 184 SKYNDYIMSLGLKIVLELGLRRGELAGLEWKYIDFNKQIITIANNLVDTYTEVSLTTPKT 243

Query: 230 GTIITVELPDGFMKLLAMTP---------------------IGKETFFINNDKQKMNATQ 268
                + +  G M+LL                            +      D   ++   
Sbjct: 244 DERRDLYVSKGLMQLLKQHKVLQTKNRMKYRPHYKENEFNGNVCDFVMTWEDGTYVHPNY 303

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +++ F     K   ++    H +R  +AT+    G     +    G   ++     Y+  
Sbjct: 304 YTVKFNKLLKKVNFDRNIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHV 363

Query: 326 -ADRIRLGIKNS 336
             +  +   +  
Sbjct: 364 NVEMQKKATEKL 375


>gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3]
 gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 27/283 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126
           I ++  S      L+ N+  S+      +            +  Y+ +            
Sbjct: 6   IDQFLDSLWLERGLSQNTLASYRFDLCLVQNFLEANNKVLAEASYQDLCDYFSFRLYSDI 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  SS  + ++++R  +++  R++    +P   ++ PK      +  ++ ++    S  
Sbjct: 66  AYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESEVDGLLSAP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   + +   E L  +GLR S+     +Q L      ++    G    +       
Sbjct: 126 DLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTRLVPLGEEA 185

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288
                  I             +  F +    +M    F    K  A +  ++K+    H 
Sbjct: 186 NYWVDRYIEEVRPELLKGRSCDILFPSRRGSQMVRQTFWHRIKYYALRCNIDKTLISPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 246 LRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLK 288


>gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
 gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155]
          Length = 292

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ N+  ++ +  +          + +Y  I    + +  E  K+     S+  + L 
Sbjct: 13  RGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELNDSTISRRLV 72

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194
           ++++ F++  +++ V  +    +E  +         +  ++++    + E      + + 
Sbjct: 73  TLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKF 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E L   GLR S+ C             ++ +  G+          +  ++   I    
Sbjct: 133 IIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASMSRQYIKNIR 192

Query: 255 FFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
             +                    ++   + K  A KA +NK    H +R   A+      
Sbjct: 193 PQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLRHSFASHLLSNN 252

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    +    G   +   E YT   ++ RL
Sbjct: 253 ADLRIIQELLGHADIATTEIYTH-VEKTRL 281


>gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
 gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4]
          Length = 297

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 91/279 (32%), Gaps = 19/279 (6%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT 129
              + E+         L+ ++  ++    +++      +F + +++ + +++ +      
Sbjct: 3   DDWVQEFVSYLVSERQLSPHTVRNYRFELERVGELLPENFIWAEVSDEQLQAVLNKLHRK 62

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S    L++++    + +++ Y+  +PCL++  PK++    +    + +    S  
Sbjct: 63  GLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLSIE 122

Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242
            +     + +   E    SGLR ++      + + +         K      V +    +
Sbjct: 123 GDDALALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRMAL 182

Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
             +      +      +D   +                       G+N     H +R   
Sbjct: 183 SAIDDWLKVRSLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQGLNARVHPHKLRHSF 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++ A    +    G   +   + YT   D   L 
Sbjct: 243 ATHMLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 280


>gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 372

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y+        A+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++    +   +       C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR S+        +  +     ++  K        L    MK L       + 
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 274

Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                + +       +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
 gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b]
          Length = 302

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            +  + +       L+  ++ ++      II  + +      T       ++I +     
Sbjct: 10  AVEGFLRYLKVERQLSPLTQQNYARQLQAIITMADEMKITAWTQLEPAQVRNIAARSRRA 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS    L+++R    W V Q+ ++ NP   +  P+      +    +++ Q     
Sbjct: 70  GLGASSLALRLSALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDEVNQLLEID 129

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E +   GLR S+     ++HL           K      V +    +
Sbjct: 130 LNDPLAVRDRAMLETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGKGSKERRVPIGGTAV 189

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             L              +  F+++   +++A      F     K GV  +   H +R   
Sbjct: 190 TWLQHWLPLRASFAPQDDAVFVSSRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 250 ATHLLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
 gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM
           13280]
          Length = 333

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 99/318 (31%), Gaps = 33/318 (10%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSR 92
           R P       +    ++  G   +R    +       L+    EY        +LA N+ 
Sbjct: 5   RPPVRDPEQGVEDRRASYNGRVERRRTGVTE------LERCRGEYLNHLTVERNLAANTI 58

Query: 93  ISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146
            ++E      +   G+        +  + +   V +++      +S  + L++++   ++
Sbjct: 59  AAYERDLRAYLAFLGERGTRRPDDVIRRDVEDFVAAKRADHAADASVNRALSAVKGFHRF 118

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYS 202
            VR+   ++NP  ++  PK         + E       Q     + G + R   E L   
Sbjct: 119 MVREGLSSVNPTATLRVPKMGDHLPDVISIEAAERLLDQDFPATAAGMRDRAVLEVLYGC 178

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI---- 257
           GLR S+ C   V  +  +   ++          V L     ++L        +       
Sbjct: 179 GLRASELCGLDVNEVYLDEGFVRVMGKGSKERLVPLVGTARRVLGTYLAEARSELFSHTR 238

Query: 258 ----------NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                     N    +++        +      G++    H +R   AT     GA    
Sbjct: 239 SASASAAVFLNMRGTRLSRQSVHAICERYGRMVGIDGLHPHTLRHSFATHMLAGGADLRA 298

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   +   + YT 
Sbjct: 299 LQEILGHADIATTQIYTH 316


>gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
 gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b]
          Length = 304

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  + ++       A N+  ++       +           G     +I    +R+ 
Sbjct: 7   RDALQGWLETQKALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRIGVTDMRAW 66

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +     P S  + L++++  ++W   +E       LS   PK + +  RP   E  
Sbjct: 67  MAFIRGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLPRPLAPEAA 126

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           Q                ++ +     L   GLR S++       L        T K G  
Sbjct: 127 QDLIDTLELQSATPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEALRITGKGGKE 186

Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             V +       +A                F       +N        +A  T+ G+  +
Sbjct: 187 RIVPVIAPARDAVAHYARLCPFDLRPGTPLFRGMRGGPLNPRAVQKVTEAARTQLGLPAT 246

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTSRLM 294


>gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 355

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 43/292 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHIRS---- 121
           Y  +      +  +R  +E       R                 D   IT + IR     
Sbjct: 51  YLTTI--KGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDITLE 108

Query: 122 --------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172
                       R ++ +S  + + +++  FK+   ++  +  NP   +E PK   +   
Sbjct: 109 DLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRKRPI 168

Query: 173 PWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               +                +      F L  G+R ++ C+  +  +Q    ++  +  
Sbjct: 169 YMNFQEATQFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTVVGKGN 228

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKA 280
               TV L D  M+ LA      +T +  N  +                +   K    ++
Sbjct: 229 -KERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQS 287

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+ K   + H +R  SAT+   AGA    L    G  +V   + YT   D  
Sbjct: 288 GLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 339


>gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 323

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 -----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     ++             ++P S  + L+++R  + W +R    + +P   
Sbjct: 59  RAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++   F    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
 gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8]
          Length = 327

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 94/323 (29%), Gaps = 51/323 (15%)

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD------------ 108
             P +    +   I   + +      L+ N+  ++        R   D            
Sbjct: 5   RPPLESQADIDAFIDAVWLED----GLSANTLAAYRRDLTGFARWLEDPEAYAREMADRH 60

Query: 109 --------------FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEY 152
                            R      I +    R      ++A + L ++R  + WA+R+  
Sbjct: 61  GDAAQAHALPAGPAKPLRDAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALREHR 120

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSD 208
              +PCL++   K+     +  +++ +         G     + R   E L  +GLR S+
Sbjct: 121 AERDPCLTLIAAKQPPRMPKTLSEQQVDALLRAPDLGQARGLRDRAMLETLYATGLRVSE 180

Query: 209 SCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF----------F 256
                   +  N   ++    K G    V L       + +                  F
Sbjct: 181 LVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALF 240

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           I    + M+   F    K  A  A V    S H +R   AT   + GA    +    G  
Sbjct: 241 ITGRAEAMSRQAFWQLVKKYALLADVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHA 300

Query: 315 TVDQAETYTKGADRIRLGIKNSR 337
            +   + YT  A      +  + 
Sbjct: 301 DISTTQIYTHVARERLKALHAAH 323


>gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1]
 gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1]
          Length = 341

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 103/317 (32%), Gaps = 28/317 (8%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI--SEYRKSAHWGSLAVNSRISF 95
           P  +       +A + +  +    +  R+   T   L   + + +      L+ N+  ++
Sbjct: 19  PRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLEH----GLSQNTLDAY 74

Query: 96  ESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151
                   +            +    +   + +R     +S+ + L+  R  + WA+R+ 
Sbjct: 75  RRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREH 134

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCS 207
             A++P L +   K+        ++  ++   +    G+    + R   E +  SGLR S
Sbjct: 135 RAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVS 194

Query: 208 DSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------F 256
           +        +  N   ++          V   +     +                    F
Sbjct: 195 ELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARTSDALF 254

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +    + M   QF    K  A +A +  + S H +R   AT   + GA    +    G  
Sbjct: 255 VTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHS 314

Query: 315 TVDQAETYTKGADRIRL 331
            +   + YT  A R RL
Sbjct: 315 DISTTQIYTHVA-RERL 330


>gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599]
 gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 89/281 (31%), Gaps = 26/281 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESR 126
            + + Y +     + + ++   + +   + +                +  +   + +  R
Sbjct: 12  EMFTRYLR--VEKNASPHTVKQYVADISEFVSFMEQHQITVFAAVSYLHGRSFLAQLAGR 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             +  S  + L+S+R L+++ +R+  +  NP   V  PK + +       +++Q F    
Sbjct: 70  GLSRRSIARKLSSLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFDLP 129

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSIKTQKTG 230
                 G + RL FE L  SG+R ++     V  +  ++              +      
Sbjct: 130 DTTTPLGIRDRLIFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYVPVGSYA 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHG 288
             +  +  +   + L    +      +N   + ++                  +  S H 
Sbjct: 190 CDVLRQYLEHGREKLLAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQLRVSPHT 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + GA    +    G   V   + YT      
Sbjct: 250 FRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKER 290


>gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY +       +  +  ++ S   +                   +  +   + +  
Sbjct: 5   AAFQEYLE--VERQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +    +S  + ++S+R  +++  R + V  NP   VE  K+     + + + ++Q+    
Sbjct: 63  QDLARTSIARKISSLRSFYRYLTRIDVVKSNPFELVELKKQHHHLPQFFYEAEIQELFKT 122

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                    + R   E L  +G+R S+  +  +  +  N   +    K      V     
Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                      F+N   + + +            +  +  N   
Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292


>gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
 gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 92/279 (32%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP 130
           I  Y         L+  +  ++     + I          ++ + + H+R  ++      
Sbjct: 7   IDRYLNHIASQRGLSPITIKNYSRNLAEFISLLEPQNIKSWQDLNSDHVRLIIKELHQKG 66

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S    ++++R   ++ V+ E +  NP   V  PK      +  + +++ Q  +   
Sbjct: 67  IKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDEVFQLLNIHE 126

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + +   E +  SGLR S+     ++ L+      +   K      + +    ++
Sbjct: 127 DDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGKGSKQRLLPITKKAVE 186

Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
            L      +     +          K++++A    +  +    +  +      H +R   
Sbjct: 187 SLRAWLKVRPELCESGEQALFVSKQKKRISARNVQMRMEKWGLQQQLPSHLNPHKLRHSF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      + +  G   +   + YT   D   L 
Sbjct: 247 ATHMLESSGNLRAVQSLLGHANLSTTQVYTH-LDFQHLA 284


>gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
 gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644]
          Length = 325

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 84/296 (28%), Gaps = 28/296 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF----- 109
           P    + + R    T    I  +         L+  +  ++     +  R          
Sbjct: 16  PPARSLPARRAPDGT--QWIGGFLHYLMTECRLSPGTLAAYRGDLVKFTRWRAAREAVPR 73

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +    + + V+        P++  + L+S+   F++   +  ++ N    V  P  
Sbjct: 74  PIAALQVGDLEAYVDYLHGLGLAPATVCRHLSSLSSFFRYLAIEGRLSENRVELVTAPSL 133

Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218
                     + + Q          +G + R   E L  +G R S+     ++ L     
Sbjct: 134 WERLPTVIGPQAVSQLLEAPAEWGWKGRRDRAILETLYATGCRVSEVAGLTIRDLDLDSA 193

Query: 219 -------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                   +   I          +                    F++   + ++      
Sbjct: 194 SARVVGKGDRERIVPLGQPAQRALRRWLEERPRRVQRRPQVVAVFVSRTGRPLDRGSIWR 253

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             KA A  AG+    S H +R   AT     GA    +    G  ++   + YT+ 
Sbjct: 254 IVKASARLAGLSATVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRV 309


>gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 354

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 105/323 (32%), Gaps = 20/323 (6%)

Query: 35  LPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +        +    +      +  ++   +  T    +  Y           N++
Sbjct: 31  LSQTFDRLSEAQRWAEDTESLLRSGGQITDNDVPEELTFVDALDRYELEVSNRK-RPNTK 89

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150
           I   +  +++         ++IT   + +  + R  +  PS+  + L  +  LF  A  +
Sbjct: 90  IRERTSANRLREHFSGLKLKEITPSLVAAFRDKRLKSVGPSTVQKDLALLSHLFTIANAE 149

Query: 151 EYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCS 207
             +   NP  ++ +P +    +R  +K++ +        S   +     + +L++G+R S
Sbjct: 150 WALDIKNPVATIRKPAKPDSRLRLLSKDEARHLLETSKQSRNKKLYHFLQLMLHTGMRPS 209

Query: 208 DSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           ++       +  +   I  T        V L    ++LL      +             +
Sbjct: 210 EAAGITWGQIDIDARIIDLTVTKTKPRRVPLTVKAVELLLELMPDQYEKNSFVFLPNNCS 269

Query: 267 TQ--------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                     F   F     KA + +   H +R  +A+    AG     L    G  T+ 
Sbjct: 270 ETLRRRPNLFFRRAFWNALKKANIEDFHMHDLRHTAASYLLMAGVDLRTLADILGHSTMQ 329

Query: 318 QAETYTKGADRIRLGIKNSRRIS 340
             + YT   D  +L  K   +I 
Sbjct: 330 MVQRYTHLLDDHKL--KAIDKIE 350


>gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS 131
             YR        L+ N+  S+     Q         D   RK+    I   +        
Sbjct: 13  RRYRTYIKLEKRLSQNTVESYMRDLRQFAHFILRQYDVAPRKVEGTMIERYMAWLYDRGR 72

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184
              S  + L  +R  F + +  + +  +P   V+ PK         T +++         
Sbjct: 73  EKTSQARCLCGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDM 132

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
             ++G +     E L   GLR S+     +  L      I+          V + +    
Sbjct: 133 RSTKGLRDSAMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISNTARD 192

Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
            +      +        T F+NN   ++         K    +AG++K  S H  R   A
Sbjct: 193 KIQRYLEERRSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHTFRHSFA 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR-ISSVVD 344
           T   + GA+  ++    G +++   E YT       L   + RR +   + 
Sbjct: 253 THLLEGGASIRQVQEMLGHESILTTEIYTH------LDSDHLRRTLEEHLP 297


>gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVES---RKHT 129
             EY  S     L+ NS  S+    ++             K+    I   +     RK +
Sbjct: 12  FQEYL-SVE-KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKIS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + + ++R  +K+   ++ +  NP   +E P+         T++++++  +   E 
Sbjct: 70  SKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIRED 129

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + +  FE L  SGLR S++C           +      K G    V   +  + +
Sbjct: 130 NLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLVPFGEKSLDI 189

Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +         F +                +N             +  +    + H +R  
Sbjct: 190 MNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKKVTPHTLRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +  A    +    G   +   + YT  A++
Sbjct: 250 FATHLLENHADLKSVQELLGHIDISTTQIYTHMANK 285


>gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
 gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3]
          Length = 392

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133
           + +      L+ N+  ++        +      +     ++   + + + +R     +S+
Sbjct: 112 WLEH----GLSKNTLDAYRRDLTLFAQWLAQTHEASLDVVSEPILTAYIAARSDGKATSS 167

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189
            + L+  R  + WA+R+   A +P L V   K+        ++  ++            G
Sbjct: 168 NRRLSVFRRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVETALG 227

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 228 LRDRTMLELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERY 287

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+    + M   QF    K  A +A +  + S H +R   AT 
Sbjct: 288 LREARPALLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSPHTLRHAFATH 347

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 348 LLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 381


>gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 90/280 (32%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---R 126
           L   I ++ + A      +  +  ++ S    ++       + ++T   +R+ +     R
Sbjct: 9   LGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPF--ATTFAELTLPTLRAWLADAVSR 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KEDM 179
               S+  +  +++R    WA  Q Y+  +P   +  PK                  E  
Sbjct: 67  GLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTVVEAEAAGELVEAE 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                  +E  + R   E L  +G+R ++     +  +         T K      V   
Sbjct: 127 INDDDHPAETLRDRAMLELLYATGMRVAELSALDIGDVDLGRGAVKVTGKGDKQRIVPFG 186

Query: 239 DGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
                 +               +  F+ +  ++++  Q     +  A + G    S H +
Sbjct: 187 GAASDAVQRWVSAGRGELAGDTDALFVGSRGKRIDQRQVRRIVERAAVRTGAGEISPHSL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R  +AT   + GA    +    G  ++   + YT  + + 
Sbjct: 247 RHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQR 286


>gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82]
 gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1
           str. NRG 857C]
 gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
 gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWFDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1]
          Length = 308

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 29/280 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--- 125
             LI  +  S    S + ++ +++ S   Q        G  + R +    +R+ + +   
Sbjct: 3   DHLIDAFMASVQNRSQSEHTLVNYASDLRQFAEYLEGCGASEVRSVEAPILRAYLRALFG 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++  + L+S+R  F +   +  +  +P  ++  P       R  ++E +++  + 
Sbjct: 63  WGYAKATVARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEEVVERLFAA 122

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                E  +     E L   GLR S+      + +  +   +    K      V      
Sbjct: 123 AGESEEALRDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCA 182

Query: 242 MKLLAMTP------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            + L                       G+E       ++ +          A A +AG+ 
Sbjct: 183 QRALTALRGEQALGPFVFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTALAARAGLE 242

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + H +R   AT   + GA+   +    G +++   + Y
Sbjct: 243 GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIY 282


>gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB]
 gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC
 gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB]
          Length = 310

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 106/297 (35%), Gaps = 35/297 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
             LI E+ +      +L+ ++R ++ S  +Q      +            ++ +    +R
Sbjct: 2   DELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVR 61

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +     R+    +  + L S+R  FK+  ++  +  NP  +V  P+ +       + +
Sbjct: 62  AFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVD 121

Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232
           ++    +        G + R   E    SG+R S+      + +  +   I+ +      
Sbjct: 122 EIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKE 181

Query: 233 ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKAT 278
             V +     + +    +                   F+N  + +++A   +       +
Sbjct: 182 RIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVS 241

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +G+ K  S H +R   AT   DAGA    +    G +++   + YT  +    + +
Sbjct: 242 MSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAV 298


>gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
 gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015]
          Length = 301

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP- 130
           +  Y +        + ++  ++      +    G       ++  + +R    +      
Sbjct: 1   MQRYLQHLMAERRYSSHTLDNYRRDLKALCDYIGPLPIDWQQVIGQDVRDFAAASHRGGL 60

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
              S  + L++ R  F++ +R+  +  NP   V  P+ + +       + +Q        
Sbjct: 61  ASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLLDAPSQ 120

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                S   + R   E    +GLR ++        L++         K      V +   
Sbjct: 121 RDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKARHVMVGGK 180

Query: 241 FMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             + L      +  +            FIN    +++           A + G+++    
Sbjct: 181 ARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRGLDRNLHP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTH-LDFQHLA 285


>gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383]
 gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383]
          Length = 316

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 88/275 (32%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133
           + +      LA N+  ++        +      D     +    +   + +R     +S+
Sbjct: 36  WLEH----GLARNTLDAYRRDLVLFSQWLAETHDAPLDSVDEAMVTGYIAARSDGKATSS 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+  V+ +P L +   K+        ++  ++        G+   
Sbjct: 92  NRRLSVFRRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLG 151

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 152 LRDRTMLELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 211

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A  A V  + S H +R   AT 
Sbjct: 212 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSPHTLRHAFATH 271

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 272 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 305


>gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           +S + +       L+  + ++++   D   QI  + G   +++     +R  V     + 
Sbjct: 10  VSRFLRYLGVERQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKN 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P+S    L+++R  F W V Q  +  NP   +  PK      +    +D+ +      
Sbjct: 70  LSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVS 189

Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F       F++   ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89]
 gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88]
 gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605]
 gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC
 gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC
 gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC
 gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89]
 gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1]
 gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88]
 gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA]
 gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15]
 gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034]
 gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146]
 gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3]
 gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1]
 gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252]
 gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263]
 gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86]
 gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           AU 1054]
 gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           HI2424]
 gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           MC0-3]
 gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054]
 gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424]
 gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3]
          Length = 318

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 92/304 (30%), Gaps = 27/304 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107
           A    T       +      ++       + +      LA N+  ++        +    
Sbjct: 9   AADNDTDAVAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLALFSQWLAA 64

Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D          +   + +R     +S+ + L+  R  + WAVR+   + +P L +   
Sbjct: 65  THDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSA 124

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K+        ++  ++        G+    + R   E +  SGLR S+        +  N
Sbjct: 125 KQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 184

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269
              ++          V   +     +                    F+      M   QF
Sbjct: 185 EGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQF 244

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A +A V  + S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 245 WNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA- 303

Query: 328 RIRL 331
           R RL
Sbjct: 304 RERL 307


>gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
 gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16]
          Length = 317

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 104/296 (35%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  ++++           +      +   +G+    
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTI 232
              +EG + R   E L   GLR S+     +  L  +   I                  I
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             ++L       + +    ++  F++     ++        K  A  AG+ K  S H  R
Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti
           1021]
 gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
 gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD
 gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein
           [Sinorhizobium meliloti 1021]
 gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83]
          Length = 311

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              +  + +        A N+  S+E   +           G  D      +   S +  
Sbjct: 6   AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           +    SS  + L+++R  +K+   +     +P   ++ PK+     +  + ED+ +    
Sbjct: 66  QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125

Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
                           +     E L  +G+R S+        L  N    I   K     
Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNK- 284
            V L    ++ +       +    ++     +           F+   K+ A +AG+   
Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 292


>gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579]
 gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149]
 gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33]
          Length = 291

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
 gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759]
          Length = 306

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 78/292 (26%), Gaps = 28/292 (9%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           LI  Y +       L   +  +++    Q        D   ++T  +   +     K+ P
Sbjct: 7   LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66

Query: 131 SSAIQFLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRP---------WTK 176
            +  + + S +  F +      + +           E                    + +
Sbjct: 67  KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLHTVETILSTIYEQ 126

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234
            +  +         +     E L  +G+R S+ C   V  +     SI            
Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK--S 285
                  + +L    +   +  +N +                          A ++   +
Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            H  R   AT   +A      +    G  +++  E YT  A   +  I  ++
Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATK 298


>gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium]
          Length = 308

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 31/276 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
           +         LA NS  ++     +     G     ++ +  I     S +    + +S 
Sbjct: 15  FLNHLQIERGLAANSIAAYRRDLVKFSIFLGSKSLSEVDSNAINDFEISLREAKLSVASI 74

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +  +++R  FK   ++     +P L +   K      +  T   +              
Sbjct: 75  NRVDSTLRSFFKHLQQEYG-YADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREGQPI 133

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------------- 233
             + +   E L  SG R S+     +  L +   S     T  +                
Sbjct: 134 TARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLGSFA 193

Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                  L      L + +       F+N+   +++           A  AG+  + S H
Sbjct: 194 TKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGITEHVSPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R   AT   + GA    +    G  +V   + YT
Sbjct: 254 VFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYT 289


>gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
 gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 319

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 108/312 (34%), Gaps = 30/312 (9%)

Query: 58  REYINSPRKKPTTLKWL------------ISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           ++ + +P+    T++ L            +  +  +     L+  +   +     QII  
Sbjct: 2   KDTLIAPQAHDRTIRKLDTLIVSTGLRRHLEAFLLACRVEDLSRRTIFDYRQKIGQIIDY 61

Query: 106 ---SGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               G  D +++T  HIR     +     P S   +  S++V F W  R+  ++ +P   
Sbjct: 62  MVALGLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAP 121

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +  PK   + IRP+  ++++              + R     L+ +G+R  +     +  
Sbjct: 122 IRPPKVPKKIIRPYYPDELRSLLLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISD 181

Query: 217 LQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +  +  +I     G       I+        K L        + ++  D + +      +
Sbjct: 182 IDVDRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYL 241

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  +AG+     S H  R  +AT+S   G    ++ +  G  T+     Y     +
Sbjct: 242 AIHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASL-Q 300

Query: 329 IRLGIKNSRRIS 340
                +  ++ S
Sbjct: 301 SEAAAEAHKKFS 312


>gi|328952276|ref|YP_004369610.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452600|gb|AEB08429.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 362

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 96/328 (29%), Gaps = 19/328 (5%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            G+I +     H RR+R                 +     +  ++       TT K L  
Sbjct: 32  SGRIWWIEYYDHERRLRRERIGPNKAAAEQRYREVRSLLAEGRFVRKCPDAKTTFKTLAD 91

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------K 127
            Y         A  S    E    +++   GD   + IT   +    + R          
Sbjct: 92  WYLNLPEVK--AKRSYSRDERSLKKLLPVFGDKLLKDITPAMVEKYRQDRLSELSYRGNP 149

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++  + +  ++++F  A+  E     P   ++  K      R  ++ +     +   
Sbjct: 150 TKPATVNREMALLKIIFNKAIANEKAEKTPVKGLKMLKENNARDRVLSEAEYLNLINQCP 209

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              +P    +   ++G+R  +        +      I  +   T             L  
Sbjct: 210 GYLRP--IVKVAYHTGMRQGEILSLTWGQIDLKEGFITLRPEDTKTNEARLIPLNSELMD 267

Query: 248 TPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
              G             N          F++   KA + + + H +R    T    AG  
Sbjct: 268 LFKGIPRGLPQLRVFLKNGNPITSIRESFQSACRKANITDFTFHDLRHTFTTNMRRAGIH 327

Query: 304 AHELMATYGWKTVDQAETY-TKGADRIR 330
              +MA  G KT      Y T G D +R
Sbjct: 328 DSVIMAITGHKTTAMFLRYNTVGRDELR 355


>gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC
           BAA-613]
          Length = 382

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 12/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
           +  Y     + + A ++   +  +   ++   G     KI    I + +     T     
Sbjct: 108 LEIYIAKMRFDNKAKSTIDQYSKFLGDMLCYLG-KPVDKIQDFDIMNFLNFYAETNGISD 166

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+           F +  ++ Y+  NP  +V+  K   +     T++++++ +    E  
Sbjct: 167 STKNHKRLIASSFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKEVERMRVACGENL 226

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLL 245
           +  +  E  L SG R S+     V+++     ++     G           +     K L
Sbjct: 227 RDNVVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKERPVFFSDRLLVYLEKYL 286

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                G     +    Q +         +  + KAG+ K    H +R   AT + + G  
Sbjct: 287 DGRREGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHALNKGMP 346

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G   ++    Y K
Sbjct: 347 LESLSDLMGHACIETTRIYAK 367


>gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 307

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 21/284 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124
             ++   +  +   A     +  +  S+    +   +   D    D   ++T+ +R    
Sbjct: 2   TQSVGDAVKAFLDDAALR-FSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    SS  + L+ +R   ++   + +V      +V  PKR     R   +E++  
Sbjct: 61  DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAA 120

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                        + R   EFL  +G+R S+     V  L  +    +   K G    V 
Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVI 180

Query: 237 LPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN-KSAHG 288
           +    +  L                FIN    ++         + +  +  G+     HG
Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   + GA    +    G  ++   + YT    R +L 
Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283


>gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC
 gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 296

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 20/262 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
           + ++  S+     Q            +    K  R+ +          ++  + ++++R 
Sbjct: 19  SKHTLKSYHDDLVQFNAFLEHEHLKLKSFEYKDARNYLSFLYSKGLKRTTVSRKISTLRS 78

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEF 198
            +++ + Q+   +NP + +  PK++      + +E+M    +  ++   +G + R+  E 
Sbjct: 79  FYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEMSALFETVEADGHKGLRDRVILEL 138

Query: 199 LLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           L  +G+R S+     ++ L  N+       K      +   +   + +            
Sbjct: 139 LYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGNKERFIPFGNMCRESIERYLELFPPIQN 198

Query: 258 NNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATAHEL 307
                         +              + AGV +   H +R   AT   + GA    +
Sbjct: 199 VKHDYLLVNINGRPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHMLNEGADLRTV 258

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            +  G   +     YT  +++ 
Sbjct: 259 QSLLGHVNLSTTGRYTHVSNQQ 280


>gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 392

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 113/348 (32%), Gaps = 18/348 (5%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  + ++  GK   Y   G    I L    +      ++ A        +     +K+  
Sbjct: 47  YRLRYKSEGGKT-AYVTIGRSCDISLAGARKR---ARHLKAQIELGADPQAEAKAKKQVL 102

Query: 70  TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T        Y         +   +   E +  +I    G+    KIT   ++    S   
Sbjct: 103 TWNAFFTDHYLPHVKQHKRS--WKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVE 160

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P++A   L  +R     AV  E +  NP   V+   +  +  R  + E+MQ+    
Sbjct: 161 EDLSPATADHHLKLIRQALNLAVDWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKV 220

Query: 186 WSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S   +     FLL +G R S++  A    +         Q T +    +       
Sbjct: 221 LKTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLND 280

Query: 244 LLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           +        +T   ++          T  +  +    ++AG+ +   H +R   A++  +
Sbjct: 281 VAIGVLDALDTEGKHDRLFVGKRGPLTTINKVWFRIRSEAGLEDYRIHDLRHSYASLLVN 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDS 345
           AG +  E+    G         Y   +     R     S +I+  +++
Sbjct: 341 AGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITEAMEA 388


>gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11]
 gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11]
          Length = 305

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 85/289 (29%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  ++       +           G     +ITT  +R+ 
Sbjct: 8   RDALEHWLAHLGGLRDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAW 67

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           + + +   + A    + L++++  + W   ++       LS   PK + +  RP      
Sbjct: 68  MAATRAGGTGARSLARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAA 127

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               E ++   +     ++       L   GLR S++                T K G  
Sbjct: 128 KAMIETVEYQSTSDWVAARDVAVVTVLYGCGLRISEALGLTGGDAPLPAVLRITGKGGKE 187

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285
             V +       +             N           +NA+           + G+  +
Sbjct: 188 RIVPVLPAARAAVDRYLDLCPHPQETNAPLFRGVRGGPLNASIIRKAMAQARAQLGLPAT 247

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D   L 
Sbjct: 248 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 295


>gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 336

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 103/314 (32%), Gaps = 32/314 (10%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKW--LISEYRKS-AHWGSLAVNSRISFESYFDQII 103
           Y  A++ S+P      + +  P       +I  +         +A  +  S+    + + 
Sbjct: 10  YAVAMSASSPAERRQLAQQLPPLQAADAGVIERFLDRFWAEQGVARQTLESYRRDLEGLA 69

Query: 104 RK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           R       G     ++             ++P S  + L+++R  + W +R    + +P 
Sbjct: 70  RWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPT 129

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGV 214
             ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+      
Sbjct: 130 ALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPA 189

Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFI 257
             +      ++          V L +     L                      +   FI
Sbjct: 190 VGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFI 249

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWK 314
           +  +Q ++   F    K  A  AG++    S HG+R   AT   + GA    L    G  
Sbjct: 250 DAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHS 309

Query: 315 TVDQAETYTKGADR 328
           ++   + YT  A +
Sbjct: 310 SLSTTQIYTLVARQ 323


>gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
 gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16]
          Length = 310

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127
           +  + +       L+++++ +++   + + +     G  D+ ++ +  +R          
Sbjct: 16  LERFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q      
Sbjct: 76  MKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +      I+          V       +
Sbjct: 136 DDPLSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRVVGKGDKERKVPFSGMASE 195

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +      + T   +++          +++             K  V  + S H +R   
Sbjct: 196 WVGKWMKVRGTLAKSDEPALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G + +   + YT   D   L 
Sbjct: 256 ATHVLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1]
 gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1]
          Length = 295

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP 130
            +EY K     + + ++  ++E               D     +    IR+ + S     
Sbjct: 6   FTEYLKLE--KNYSEHTVTAYEKDLRSFAEFCKKEYEDDSIINVHYVQIRNWIVSLVEKG 63

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              ++  + ++S++  +K+ ++ + +  +P    +  K   +   P+++++M    +   
Sbjct: 64  LQNATINRKISSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKEMDIVLNAVE 123

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + +   E    +G+R S+        +     +I+   K      V L    
Sbjct: 124 FKNDFEGVRNKTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIVPLLQKL 183

Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
              L    + ++       +         K+ +           + A   V KS H +R 
Sbjct: 184 EAQLKEYILHRKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKKSPHMLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   + GA  + +    G  ++   + YT 
Sbjct: 244 TFATHLLNQGADLNAVKELLGHASLASTQVYTH 276


>gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
 gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245]
          Length = 306

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 33/285 (11%)

Query: 73  WLISEYRKSAH--------WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG 122
            L   YR++            + +VN+R S+ +   + +    D       + T  IR  
Sbjct: 5   DLAEPYRRTLENFLNHLSVERNFSVNTRESYRNDLKRYLLFMQDENKAIGAVETADIRKF 64

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +     T    S+  + ++++R L K+ + +  +  NP  ++++PK         +  ++
Sbjct: 65  ISELHATGLEASTLGRNISAIRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEV 124

Query: 180 QQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
                   +         + +   EFL  +G+R S+      QHL  +   ++   K   
Sbjct: 125 MSLLEAPLQQNPPGKFLLRDKAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSK 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG 281
              V + +  ++ +           +  + +            +     +  +  A  AG
Sbjct: 185 ERLVPVGNAAIEAITQYQNQLRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAG 244

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + K  S H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 245 IRKNISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTH 289


>gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY +       +  +  ++ S   +                   +  +   + +  
Sbjct: 5   AAFQEYLE--VERQYSPETVTAYLSDLREFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +    +S  + ++S+R  +++  R + V  NP   VE  K+     + + + ++Q+    
Sbjct: 63  QDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                    + R   E L  +G+R S+  +  +  +  N   +    K      V     
Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                      F+N   + + +            +  +  N   
Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292


>gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD
 gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 91/287 (31%), Gaps = 30/287 (10%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
             +I  +         +A  +  S+    + + R       G     +            
Sbjct: 6   ASVIERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTR 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++P S  + L+++R  +   +R    + +P   ++ P       +  T+  ++   + 
Sbjct: 66  ANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAA 125

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
               +    + R   E +  +GLR S+        +      ++          V L + 
Sbjct: 126 PDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEE 185

Query: 241 FMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
               L                      +   FI+  +Q ++  QF    K  A  AG++ 
Sbjct: 186 SQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDP 245

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              S HG+R   AT   + GA    L    G  ++   + YT  A +
Sbjct: 246 ATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 292


>gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1]
 gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22]
 gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1]
 gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22]
 gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a]
 gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b]
 gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A]
 gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22]
          Length = 319

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 29/299 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125
           +I +Y++      SL++N+  ++ +  D+++           D     +      +G+  
Sbjct: 16  IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGIYVLDVCLSDLQR--FAAGLHD 73

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + L+ ++  F++ + + Y+  +P   +E PK   +     T E++ +  S 
Sbjct: 74  IGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISA 133

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 EG + R   E L   GLR S+     +  L  +  F     K      V +   
Sbjct: 134 VDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPR 193

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAH 287
            +  + +    +    +    +             +        K  A KAG+ K  S H
Sbjct: 194 AINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPH 253

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             R   AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 254 TFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 311


>gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
 gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1]
          Length = 308

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 26/283 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124
               I  + +        + N+  ++               +  +           +   
Sbjct: 5   FDRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQA 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+ ++  + +   +     +P  +++ P+      +   +E++     
Sbjct: 65  EIGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLD 124

Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
                   +G       E L  +GLR S+     +  +  +    +   K      V L 
Sbjct: 125 AARALEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLS 184

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---K 284
           D     L    + ++T    +   +              + F+      A  AG++    
Sbjct: 185 DPARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S H +R   A+     GA    +    G   +   E YT   D
Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLID 287


>gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
 gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220]
          Length = 300

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---V 123
           L   ++ + +       L+  + ++++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP  SV  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  ++D        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVAWIEHWLDLRGLFGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563]
 gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 98/279 (35%), Gaps = 23/279 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           L+ E+       + A ++  S+     +        +         + +   + ++S+  
Sbjct: 17  LLDEFSDYLQTLNFAAHTINSYNKDLKEYFNFLESKNILLDNADHYSVRDYLTFLKSKSL 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T S+  + L+S++  +K+ +R         + ++ PKR+    +  + +D+ +  +   +
Sbjct: 77  TNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFLSLDDIDRILAIDDD 136

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
           G     + ++   F+   GLR S+     +  ++    +++    G+ +           
Sbjct: 137 GDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGKGSKVRDIPVLPVVYE 196

Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +    +        +  FIN   + ++        K     A +  + S H +R
Sbjct: 197 NWDIYMEKRRMIQKEYSQNNDYLFINRFGKPISDRSIRTSMKRLIRNANISMDFSPHTLR 256

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   +  A    +    G +T+   + YT   +  
Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295


>gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 102/332 (30%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGRRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWMQEKE-SS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +        +     +I  Q+T                    +     D    LL
Sbjct: 198 GMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEASNRMIPMTEDLMGALL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 KE  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 EYQNHRKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349


>gi|159045753|ref|YP_001534547.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913513|gb|ABV94946.1| integrase family protein [Dinoroseobacter shibae DFL 12]
          Length = 388

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 102/341 (29%), Gaps = 19/341 (5%)

Query: 10  FVTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKK 67
           +V + R R  G+        HG  + L           Y++ AL G  P  E     + K
Sbjct: 43  YVVQYRNRQTGRSRRKTIGQHGPLMTL--YQAREIARGYLADALRGGDPVMEAQARRKAK 100

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
               + L  +Y  +         S     S  D++ +   G     +++ K I+    S 
Sbjct: 101 SM--RDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNSL 158

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + TP  A + L  +  +F+ A+R      NP   V R   +    R  +  ++ + +   
Sbjct: 159 RDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPRFAEEK-RYRWLSDNELDRLREAL 217

Query: 187 SEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 R A      L +G R  +   +       +          T             
Sbjct: 218 DAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHHTKQKRTEHLPLSAA 277

Query: 245 -------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                  +A        F     K          ++ +  + AG+ +   H  R   A+ 
Sbjct: 278 TVALLRSIAHGRTDDSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNRHTHASH 337

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
              +G +   +    G       + Y   AD  +R   +  
Sbjct: 338 LVSSGHSLPIVGRLLGHTNPMTTQRYAHLADDPLRQAAEVM 378


>gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568]
          Length = 291

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++      ++  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5]
 gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC
 gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5]
          Length = 305

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 102/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        T SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    L    G K++   ++YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTS 289


>gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille]
 gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 87/284 (30%), Gaps = 28/284 (9%)

Query: 71  LKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTK-HIRSGVE 124
           +       + +      LA NS  ++               G       T   +     +
Sbjct: 12  IDEFCDTLWLED----GLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAK 67

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +S+ + L  ++  ++ A+RQ  +  +PCL +   K+     +  ++  ++   +
Sbjct: 68  HATTKATSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLA 127

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                +    + R   E +  SGLR ++        +  N   ++    G     +   +
Sbjct: 128 APDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGE 187

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                +                 +  F+      M    F    K  A  A +    S H
Sbjct: 188 EARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 248 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 290


>gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           301]
 gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str.
           2457T]
 gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae
           Sd197]
 gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50]
 gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718]
 gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC
 gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC
 gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301]
 gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T]
 gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197]
 gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1]
 gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division, subunit of Xer
           site-specific recombination system [Escherichia coli
           BL21(DE3)]
 gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str.
           REL606]
 gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli
           BL21(DE3)]
 gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017]
 gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185]
 gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1]
 gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1]
 gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1]
 gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1]
 gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617]
 gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70]
 gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T]
 gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1]
 gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489]
 gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007]
 gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
 gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976]
          Length = 331

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 95/292 (32%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSA 133
           +Y +       + ++  +++     +       G   ++++    +R  +        SA
Sbjct: 43  DYLRIEKQA--SPHTLSNYQRQLLAVSEMFSQAGIGAWQEVNVAAVRWMLTQSHKQGLSA 100

Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 L ++R  F + V+QE + +NP L ++ PK      +    E + Q  +  +   
Sbjct: 101 KSIGLRLVALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLNTETSEP 160

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+           N        K      + +    ++ L 
Sbjct: 161 LELRDLAMMELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGTKALQALQ 220

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
               G+  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 221 AWLGGRHDFNPQDNALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHLHPHKLRHSFATHM 280

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G  ++   + YT   D   L      +   +     ++
Sbjct: 281 LEASGDLRAVQELLGHSSLSTTQIYT-SLDFQHLAQIYDAAHPRARRKKEEE 331


>gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 361

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 124/346 (35%), Gaps = 30/346 (8%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLP-YPHESTFIPAYM 48
           M+   R      LP  V +  +R GK  +Y++ G G      R++LP  PH   F  A  
Sbjct: 1   MSRKHRRPATVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVR 59

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKS 106
            A            S      T+  LI  Y  +       LAV++   +      + +  
Sbjct: 60  QA---------QGISGPVVDGTIGALIDAYEAAWPGLPRKLAVSTTEQYRRQLRIVRKVW 110

Query: 107 GDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           GD     +   H+++ +E     TP +A   L ++R + +WA     +            
Sbjct: 111 GDLQAEALRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAHF 170

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           ++ EG +PWT + +      ++       A+    Y+G R SD  R G   +    FS+ 
Sbjct: 171 QQGEGHKPWTPDQLAFADKNFT--GMLHRAYVLARYTGQRISDVVRLGWNDIDEGGFSLP 228

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
            +KTG      +       +A        F   ++ +         W     T   V  +
Sbjct: 229 QKKTGVRPWCPIFPELESEMAKWEKRPGPFLYQDNGKPFTTNLMWKWLNDARTGQPVIED 288

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              HG+R  +       G +A ++    G  +    E Y++ ADR 
Sbjct: 289 VVWHGLRANAVIRLRQDGFSAPQICDAVG-MSPQMVERYSRYADRK 333


>gi|121594962|ref|YP_986858.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|330824224|ref|YP_004387527.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|120607042|gb|ABM42782.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|321116506|dbj|BAJ72205.1| integrase [Acidovorax sp. KKS102]
 gi|329309596|gb|AEB84011.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 400

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 116/365 (31%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+ ++  +        R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKITPTGRKVFMVQYRTNSGVRRKPALGQFGELTVEQARSLAQDWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116
                +  +K  T+K L   +           +++ S++   D   I   G     ++T 
Sbjct: 87  PGLDKAEARKAPTVKELCGRFMDDHSKPHNKPSTQASYQYQIDNFVIPAFGSKKVHEVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I + ++  + +P+ A + L+ +R +F  A    Y           PK   +G      
Sbjct: 147 HDITALMKRMERSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++       + + ++       +    +R      A +  +    +       G ++  +
Sbjct: 207 DEQMVSLFAYLDKAEAEGLEHPIYLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266

Query: 237 LPD---------GFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN 283
                          +LL   P    + ++        + +    +   ++    +AGV 
Sbjct: 267 SKTGDMSKPLSEEARRLLTNAPRYGNSPYVCPAILDHDKPLGPHSYYQAWRRILDRAGVP 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           K   HG+R  SAT  A++G      MA    KTV     Y    D         R+ + +
Sbjct: 327 KVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380

Query: 343 VDSDD 347
           V S  
Sbjct: 381 VASRR 385


>gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
 gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037]
          Length = 309

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 81/290 (27%), Gaps = 35/290 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESR 126
           L+  +  Y +       L+ ++  ++       I          I   T   I      R
Sbjct: 3   LERAVEGYLRHVALERGLSDHTVAAYRRDLAVYIEWLRGRGVDAIETVTPALIADFAAER 62

Query: 127 K-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    SS  +  +S+R L ++ V +  V  +P   +  PK      +  T   + +
Sbjct: 63  ASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPKALTIGQVNE 122

Query: 182 FKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                                 + R   E L  +G R S+  +  V    +        K
Sbjct: 123 LLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVHGDLLRVRGK 182

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKA 277
                 V +       +                     F+      ++     +  +A A
Sbjct: 183 GDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQSAWLIIQAAA 242

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +A +  + S H +R   AT     GA    +    G  +V   + YT  
Sbjct: 243 ERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHV 292


>gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909]
          Length = 296

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +  S+     Q          +  T      ++  + + S +   ++  + +++
Sbjct: 16  RNFSAYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M    Q  +    +G + ++ 
Sbjct: 76  LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  N        K      +   +   + +       + 
Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
             + N            +              + AGV +   H +R   AT   + GA  
Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 400

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 50/366 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +GR+ R  +  ++         +  +              TTLK  ++ +       
Sbjct: 31  RDENGRQKRQYFYGKT--RQEVAEKIAKTLNDLANGVYVDPAKTTLKDWLNTWLWEYKKQ 88

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
           +L  ++   +  Y    I    G +  + +  +H+++   ++       S+  Q  T + 
Sbjct: 89  TLRPSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYNAKYQEGLSISTIKQIHTVLH 148

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A++   V  N   +   PK K +        + QQ      EG + + AF   L 
Sbjct: 149 SALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAALEGERLKTAFLVELA 208

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------ITVE 236
           SGLR  +      + +      I+ +++                              V 
Sbjct: 209 SGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVP 268

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           LP   ++ L                     +  F       ++   F   F     KAG+
Sbjct: 269 LPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGL 328

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           +KS   H +R   AT   +A      +    G K +      Y+     I+     + ++
Sbjct: 329 DKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKA--AAMKL 386

Query: 340 SSVVDS 345
           +S+ ++
Sbjct: 387 NSLFEN 392


>gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 300

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  +  +++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
 gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21]
          Length = 302

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 98/305 (32%), Gaps = 36/305 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  +   + +      + + N+ ++++             G   + +++   IRS +   
Sbjct: 5   LDPMAERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQL 64

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   +  + ++S+R  +++ +R+     NP   V+ PK + +      + +M    
Sbjct: 65  HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLL 124

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                    G + R   EFL  +G R S+     +  L  +        K      V L 
Sbjct: 125 ELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLG 184

Query: 239 DGFMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
              ++ +                    +  F+N+    + A             A +  +
Sbjct: 185 HPCIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKH 244

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H +R   AT   D GA    +    G  ++   + YT            + RI+SV 
Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVT---------ADRIASVY 295

Query: 344 DSDDP 348
               P
Sbjct: 296 KKHHP 300


>gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum
           GMI1000]
 gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD
 gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 24/282 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
             I  +  +      LA N+  ++        +          +     +     +R   
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKALDQTEDVDLSDYFAARHED 76

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              S+A +  T  +  F+WA+R+  V+ +P   +   K+     +  ++  ++   +   
Sbjct: 77  SLASTANRRRTVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEALIAAPD 136

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
                G + R   E +  SGLR S+        +  N   ++           V      
Sbjct: 137 VDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              L        T           F+      M    F    K  A +A +    S H +
Sbjct: 197 GDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAPLSPHTL 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1]
 gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1]
          Length = 351

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 119/354 (33%), Gaps = 33/354 (9%)

Query: 12  TKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K+R   GK + YY+    G R+    P    FI +Y +AL                   
Sbjct: 11  VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTPPDQ--------- 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESR 126
           L+ ++ +Y+ S  +  LA  +R  ++ +   I  + GDF    +    T     +  E  
Sbjct: 61  LRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRERL 120

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K++   A      +  +  WA  + +  +NPC    R  R T   + WT ED Q  + +
Sbjct: 121 AKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQ--RFY 178

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   L     L++G R  D               +  QKT   + +         L
Sbjct: 179 KHAPRHLHLPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTKVRVQIPAGKPLKAEL 238

Query: 246 A----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                                +N       A  F   ++    +AG+ + + H +R  + 
Sbjct: 239 DALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFHDLRGTAV 298

Query: 295 TISADAGATAHELMATYGWK--TVDQAETYTKGADR-IRLGIKNSRRISSVVDS 345
           T  A AG T  E+    G     V      +   DR   LG    R++  +  +
Sbjct: 299 TRLAIAGCTIPEIATITGHSLKDVGTILD-SHYLDRNSALGESAIRKLEDLDGA 351


>gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11]
 gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1]
 gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  +  +++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITVQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 311

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +K L S+Y         +  +  ++ +  D       D    ++     R       +  
Sbjct: 6   IKNLFSDYLTHE--KQYSPETIKAYMADLDNFQAFMKDAGIAQLDQVAYRDIRIYLGNLQ 63

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  + L+S+R  +   + +E V+ NP   V+  K   +    + + ++Q    
Sbjct: 64  RGGLSRKSISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFD 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + R   EFL  +G R S+     +  +      +    K      V +  
Sbjct: 124 SVQGSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGS 183

Query: 240 GFMKLL---------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--V 282
                L                         F+N   +++ +   +         +   +
Sbjct: 184 FCHDALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTL 243

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +   H +R   AT   + GA    +    G  ++   + YT  +   
Sbjct: 244 SIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEK 290


>gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017]
          Length = 273

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 23/259 (8%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
           ++      ++           T +      + +      +  +S+ + L+++R LF++  
Sbjct: 3   AYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLY 62

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGL 204
           R+++   +P   +  PK      +  ++  +++             + +   E L  +GL
Sbjct: 63  REKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGL 122

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-------- 255
           R S+     +  +      ++          V L +  +  L         +        
Sbjct: 123 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 182

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310
             F +   Q+M    F    K  A  AG++    S H +R   AT   + GA    +   
Sbjct: 183 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 242

Query: 311 YGWKTVDQAETYTKGADRI 329
            G   +   + YT  A   
Sbjct: 243 LGHSDLSTTQIYTHVATER 261


>gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM
           7]
 gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           TA208]
 gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning
           [Bacillus amyloliquefaciens LL3]
          Length = 305

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124
              L  EY +     + +  + +++ +  ++        +   +        +   +   
Sbjct: 8   FLKLFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGLNEAAYHDVRIFLTEAY 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   +++      
Sbjct: 66  EKGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFA 125

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + +   E L  +G+R S+ C   V  L   + ++    K      +    
Sbjct: 126 VSDRSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYIPFGS 185

Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                L +                    F+N     + A            KA   ++  
Sbjct: 186 YARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 288


>gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5]
 gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC
 gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5]
          Length = 305

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 102/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +     ++        I T  IR 
Sbjct: 3   DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRL 62

Query: 122 GVESRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                          SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRHCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    +    G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTS 289


>gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 311

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  ++ S+         I+  +G  D+R +    +RS V   K   
Sbjct: 20  VDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRNLDASGVRSVVSRSKRDG 79

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V +  +  NP   V  P+      +    ++  +      
Sbjct: 80  LHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPKNMDVDETNRLLEIDL 139

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + R   E +  +GLR ++      QH+   +       K      + +    + 
Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGKGSKERKLPIGKTAVT 199

Query: 244 LLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  FI+N  ++++       F     K G+  +   H +R   A
Sbjct: 200 WLERWMALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGINSHVHPHKLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296


>gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 97/324 (29%), Gaps = 16/324 (4%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + GK+ Y+ F     R          T      + +      R      +++ TT    +
Sbjct: 10  KRGKVFYFEFMYKGQRYYEKIGVVSKTVAKEIANEIRSRI-IRGEYIPQKERKTTFSDAV 68

Query: 76  SEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
             Y +     S A   S+        ++    G     +I+T  + S  + R      P 
Sbjct: 69  RVYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQ 128

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +  + + A              +      E +R  ++ + Q+  S   E  +
Sbjct: 129 TINMELNILGSILRRAKEAGLFDGELPKIEKFRNADRERLRFLSEREAQRLISACPEWFK 188

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLA- 246
           P + F   L +GLR  +      + +      I  ++       +  + +     KLL  
Sbjct: 189 PVVIFA--LNTGLRAGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQG 246

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
                 G           K     +   FK    KAG+ +   H +R   A+  A     
Sbjct: 247 LERKEHGYIFTNRFGLPYKYEDKTYRRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKD 306

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
            + +    G  +    + Y    D
Sbjct: 307 IYAVQNLLGHSSPSVTKRYAHLTD 330


>gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium
           pseudotuberculosis I19]
          Length = 310

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 86/295 (29%), Gaps = 37/295 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHT 129
               +         ++ N+  ++     + +          +   T++ + S V   +  
Sbjct: 7   AADRWLTHLAIERGVSANTLSNYRRDVQRYLDWIESRGIDDLGILTSRDVESYVLDLRRG 66

Query: 130 ----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED- 178
                      SSA + L   R L K+A+ +  ++++    V  P          +  + 
Sbjct: 67  DPDTGKQPLAASSAGRALVVARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEV 126

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228
                 +        E  +     E L  +G R S+     V  +              K
Sbjct: 127 EELISAIPTDNIATPEDLRDAALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGK 186

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279
                 V +     K L    +             +         +        K+ A +
Sbjct: 187 GDKHRIVPVGSMAQKALRRYLVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARR 246

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
           AGV  + S H +R   A+   + GA    +    G  +V   + YT   AD +R+
Sbjct: 247 AGVQKDISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRI 301


>gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 373

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 122/370 (32%), Gaps = 47/370 (12%)

Query: 17  RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G          R  +G+R +       T   A   AL     K E          TL+
Sbjct: 7   KRGTTYSIVVDVGRDENGKRKQKWISGFKTKKEA-EKALAEIIAKIEKNEFIEPSKITLQ 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKH 128
             I+E+ K       A  + IS +S  +  II   G  + +K+    I+        ++ 
Sbjct: 66  QFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNLGHIELQKLKPVEIQKFYNFLKEKQL 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++       +  + K+AV+ +Y+A NPC  VE PK+  +    W  E +++      +
Sbjct: 126 SNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEAPKKDKKEFVTWNFEHVKKA-KKIFK 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------- 241
            +   +     L++GLR  + C    + +     +I  ++T   I               
Sbjct: 185 DTPIYIHVMIALHTGLRLGEICGLRWEDIDFKNQTITVRRTAQRIDGRFIFKEPKTETSK 244

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAK 276
                    +++L      +    +   ++ +                     +  FK  
Sbjct: 245 GIIAIPDFLVQILKQEKNKQLQNKLIFGEKYITEYEGFISVWEDGRFKEPDYVTKKFKKI 304

Query: 277 A-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333
              ++ +     H +R   AT+   +G     +        +      Y+     + +  
Sbjct: 305 LQKQSEIPVIRFHDLRHTHATLMLRSGVDLKTISKRLRHGRISTTADFYSHV--DLEMER 362

Query: 334 KNSRRISSVV 343
           +  R++ + +
Sbjct: 363 EALRKLEANL 372


>gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
 gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium
           SWAT-3]
          Length = 310

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 23/276 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+R++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAEHLVTLGLKDWRQVDAAWVRQLASKGMRDGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q      +  
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     ++ + +    I+                  + + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPFSGLAKEWVD 199

Query: 247 MTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                +        +  F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G + +   + YT   D   L 
Sbjct: 260 VLESSQNLRTVQELLGHENISTTQVYTH-LDFQHLA 294


>gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012]
 gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905]
 gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82]
 gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74]
          Length = 298

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G  ++++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLKNWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
 gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas]
          Length = 309

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 36/291 (12%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126
            ++ + ++      ++ N+  S+ +    + +     D   +T   I    +       +
Sbjct: 6   YVNIFLEAIVAEKHVSHNTYQSYRTDLLGLCKFIDRNDL-LLTDASIHELQDYIRFLYEK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
            +  ++  + +++++ L+ +  R   +  +P + ++ PK      +  + E++       
Sbjct: 65  GYKANTVSRKISAIKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDVA 124

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +G +       L  SG+R S+      + ++  +    T+     I  +     
Sbjct: 125 ALDVSPDGRRINAIVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGKAKKER 184

Query: 242 MKLLAM--------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           + LL                        + +  F        +   +     K  A  AG
Sbjct: 185 IILLNSSAVTSIQKYMEVYEYFIPNGYKMSQWLFPGTKFDNPVTRQRVGQLLKNLAMNAG 244

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +   + S H +R   AT   + G+    +    G   +   + YT  A   
Sbjct: 245 INVTHVSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASER 295


>gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
 gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 95/294 (32%), Gaps = 32/294 (10%)

Query: 69  TTLK--WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHI 119
            T +   L++ + K     + + ++  ++E      +          GD +   +  + I
Sbjct: 1   MTFEPMQLLAMWLKQREIQNQSAHTLQAYERDVSDFLLFCEQKKLELGDVEATDL-REFI 59

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              VE ++ + SS  + L+S+R   KWA + +++A NP    +  ++          E +
Sbjct: 60  AQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIETI 119

Query: 180 QQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
            Q                 + +   E L  SGLR ++     ++ +  N   ++      
Sbjct: 120 NQILDQALPEKEVEQQMWYRDKALLELLYSSGLRLAEVQGLRIKDIDFNRQLLRITGKGN 179

Query: 231 TIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKA 280
               V         +         +          FI      +   Q     K +A +A
Sbjct: 180 KTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVKFQAQRA 239

Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G  ++   H +R   A+           +    G   +   + YT   D  RL 
Sbjct: 240 GVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH-VDFDRLA 292


>gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 317

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 36/293 (12%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG 122
            P  L      Y         +A N+  S+     +        G  D   +    +   
Sbjct: 6   DPAALDDQFQGYLDHLAIERGVAANTLSSYRRDLRRYAEHLASRGVTDLAGVAEADVSEF 65

Query: 123 VESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + S +           +  SA + + ++R L ++A  +    ++    V+ P       +
Sbjct: 66  LVSLRRGDPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPK 125

Query: 173 PWTKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             + +++                   + R   E L  +G R S++    V  +     S+
Sbjct: 126 SLSIDEVLALLEAAGGDGEADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSV 185

Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272
               K G    + +    +  L    +                F+N    +++       
Sbjct: 186 LLRGKGGKQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 245

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 246 LQDAAERAGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 298


>gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
 gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091]
          Length = 291

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++       +                 +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 297

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 97/295 (32%), Gaps = 32/295 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVE--- 124
           K    +Y +       + ++  ++ +                   ++    IRS +    
Sbjct: 5   KQAFQDYLQFE--KKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVFLV 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + + S++  +K+ ++ + + ++P L  +  K       P++++++     
Sbjct: 63  DQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMF 122

Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT---- 234
                   E  + +L  +    +G+R ++     ++++  ++       K          
Sbjct: 123 GVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVPLL 182

Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                           +  +  +     +       +       + +F   + K  V KS
Sbjct: 183 PIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEK--VKKS 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
            H +R   AT   + GA  + +    G  ++   + YT    A+  ++  +   R
Sbjct: 241 PHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPR 295


>gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143]
 gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143]
          Length = 298

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 396

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 104/342 (30%), Gaps = 30/342 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + R    K      K  GR  R+ +      T   A   AL           +      
Sbjct: 38  VRVRDTGHKSYILMTKRKGRPLRMTIGAVQHMTCDAARQRAL---DHLATDCGASSDPAI 94

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL  L++      H      +++ ++ +   +Q+I   G      IT + I    +    
Sbjct: 95  TLGALVAGRWHDEHLMRCKPSTQRTYRNMLQNQLIPNFGTMQLDAITREAIADWFDRFSQ 154

Query: 129 T-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
           T P +A + L  +  +  +AVR   +A N    + + K K            R +   D 
Sbjct: 155 TAPGNANRGLILLNQILNFAVRHGLLARNVAAGLTKNKGKKLTRFLSGEELARLYHVMDE 214

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  +E  Q R     L+ +G R  +  R     +  +   +K  KTG    V L  
Sbjct: 215 HVADCPRTERKQGRDIVRLLILTGCRKGEILRLRWDEIDGDRLRLKDSKTG-PREVHLSL 273

Query: 240 GFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
               +L                       F +        T    ++ A   +AG++   
Sbjct: 274 SARAILDRHKRATRSHAGGHGSQYRDGYVFPSKICPDQPITSIESFWYAVRQRAGLDDVR 333

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R   A+ +  +G     +    G   +     Y    D
Sbjct: 334 LHDLRHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHVGD 375


>gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
 gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15]
          Length = 294

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 30/295 (10%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVE--SR 126
           I+ + +      +++ ++  ++ S   Q             +   ++   IR  +    R
Sbjct: 5   IAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLHR 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
            HT SS  + L ++R  FK  +R   +  NP   V  PK++ +     + ++    ++  
Sbjct: 65  DHTKSSVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETP 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
           K       + R   E L   G+R S+     +  +  +  + +   K G    V +    
Sbjct: 125 KEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPVGSIA 184

Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFS 293
              L+     +         F N    ++                 A    S H +R   
Sbjct: 185 RAALSHYLTARNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTLRHTF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    +    G  ++   + YT              R+  V D   P
Sbjct: 245 ATHLLEGGADLRAIQELLGHASLSTTQKYTHV---------GIDRLMEVYDKAHP 290


>gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
 gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596]
          Length = 300

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 94/284 (33%), Gaps = 27/284 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +    + +  +Y  S    + + N+  ++E+      R   +    +      +  +   
Sbjct: 3   QEGKWEQMFLDYLHSE--RNYSENTSTAYENDLLDFRRFLNEQAITQYKQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                  E +     + R+  E L  +G+R S+     +  +     +I    K      
Sbjct: 121 ALFQVVYEDNETLTIRDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGNKERY 180

Query: 235 VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           V         +                  ++  IN+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLDCRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 293

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 34/298 (11%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH-- 128
             + K   +    + ++ +S+++  DQ  +   D     D  K   +HIRS V +     
Sbjct: 3   DTFFKYLQFEKRYSSHTLVSYQNDLDQFSKYLEDQFQTCDLLKAEHRHIRSWVVNLMQDG 62

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P S  + + ++R  +K+A+ +E +  NP   ++  K   E  +   +++M    S   
Sbjct: 63  VKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKEMDNLLSHIV 122

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG++  L  E L  +G+R ++              +I+   K      V      
Sbjct: 123 FPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKERVVPFHLEI 182

Query: 242 MKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKAGV--NKSAHGVR 290
            + L      K+  F +N +                 +   K    +      +S H +R
Sbjct: 183 GRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTISKRSPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              AT   + GA  + +    G  ++   + YT           +  ++  V D   P
Sbjct: 243 HTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH---------NSLDKLKKVFDQAHP 291


>gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
 gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093]
          Length = 306

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 32/287 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVE 124
                ++  S      L+  +  ++ +  +Q +         + T       +     ++
Sbjct: 4   ADWARKFLTSMDVERGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRTEDVEQFVQHLD 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++   P+S  + L  +R+  ++ +++  VA++   ++  PK         + +D+ Q   
Sbjct: 64  AQGLQPASIARRLACVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQLLD 123

Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
                        ++     E L  +G R S++    +  +      ++ T K      V
Sbjct: 124 TAQQMASTGDVVATRDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQRLV 183

Query: 236 ELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAG 281
                  + L                        ++N   ++++        +  A +A 
Sbjct: 184 PFGSTAAQALQQYLDASRPVLEAKAKGERELRAVWLNKRGKRLSRQSAWEVLQTAAGRAK 243

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 244 LTRPIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVS 290


>gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf-5]
 gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC
 gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5]
          Length = 298

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++    ++++        R  T   I+      + +  + 
Sbjct: 5   LDAYCAHLRSERQVSPHTLQAYRRDLEKVLGFCEKMQVRSWTDLDIQGLRSLIARLHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E     GLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVLPVGKKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
             L                 F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 SALEQWLPLRALSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLAA 282


>gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
 gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01]
          Length = 310

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   + + +     G  D+ ++    +R   
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 300

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127
           +S + +       L+  +  +++   D II  +G+     +++     +RS       + 
Sbjct: 10  VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL  +        K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + +        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
 gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7]
          Length = 298

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     + HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 302

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124
           LI ++     +  + +  +  ++    DQ  R       G FD  +I +  +RS +    
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVCLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
             K +P S  + L+S++  FK+ +++  V+ NP   V  PK K                 
Sbjct: 62  DEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALLD 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   EG + RL  E L  +G+R S+        +      +K         +    
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L +                FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + +    G  ++     YT  
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278


>gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
 gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155]
          Length = 394

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 103/336 (30%), Gaps = 30/336 (8%)

Query: 17  RHGKIIY-YFRKGHGRRI-RLPYPHESTFIPAYMSALT-----GSTPKREYINSPR---- 65
           + G I Y  F     +++  L  P+++         L+           E+I   +    
Sbjct: 12  KRGNIYYLRFTVNGKKKVVSLKTPNKAIATKEAEKYLSPQKASNEAEAAEFIAKAKGLIS 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIR 120
            +  +L      Y KS        ++  S++ +  + +R             ++T K   
Sbjct: 72  TERISLDDAWDLYFKSKRRRDSGKSTITSYKQHLQKFVRFVEAEYDELIYLDELTPKVAE 131

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +ES K +P++  ++   +++ F    +   V  NP   +     K E  R    +++ 
Sbjct: 132 EFLESLKVSPNTYNKYKNFLKLYFDTVSKDCGVTKNPFEGIISKSLKKESWRELNDDEVD 191

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITV 235
           +         +  +     +Y+G+R  D+       +      I            ++ V
Sbjct: 192 KL--TSYPKGEVWVLMNLGIYTGMRLKDAALLKWADVDLKREKIIFTPWKTAKSEKVVHV 249

Query: 236 ELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHG 288
            +     K L      K +            + + T  S   K       +       H 
Sbjct: 250 PILPELRKALQWVKQQKLSNDLVLPEMAASYQKSRTNLSSLVKRIFIDLKIRDGKVGFHS 309

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R    +  A AG     + A  G  +      YT 
Sbjct: 310 LRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTH 345


>gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2]
          Length = 315

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 86/289 (29%), Gaps = 28/289 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
           P +L      Y  S  +   L+ NS  ++     +        G     ++   H+ +  
Sbjct: 13  PASLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWLNGQGMSHLGEVERTHVEAFA 72

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    P +  + L ++R    +A+ +   A +P   V  P+      +  + +D++
Sbjct: 73  LHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRLPKALSLDDIE 132

Query: 181 QFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITV 235
              +          +     E L  +G R S++    +  L      ++   K G    V
Sbjct: 133 AMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGKGGKERIV 192

Query: 236 ELPDGFMKLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAG 281
                    L                          N    +++        K     AG
Sbjct: 193 PFGSHAATALGAWVSRTRPSMAAKARSSAPAGALFLNARGTRLSRQTAWQIVKDAGELAG 252

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +    S H  R   AT   + GA    +    G  +V   + YTK ++ 
Sbjct: 253 LEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEE 301


>gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC
 gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 295

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 89/270 (32%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127
           + +Y         ++ ++  +++    +I+      G   ++ +T   +R   +      
Sbjct: 5   LDKYWNYLRIERQVSPHTLTNYQRQLYRIVDILAENGITSWQAVTPSIVRFILAQSNKDG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S    L+ +R  F + V+Q+ + +NP   V  PK+     +    E +QQ  +   
Sbjct: 65  LKERSLALRLSVLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNNDS 124

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E L  SGLR S+     +  +   +  ++          V        
Sbjct: 125 KEPIDIRDRAILELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGRYASH 184

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F   ++         ++         +    K G+  + + H +R   A
Sbjct: 185 AIQQWLKVRILFNPKDEALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHLNPHKLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   +A +    +    G   +   + YT 
Sbjct: 245 THMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 308

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES--RK 127
                Y K+     L+ N+R ++    ++ +    +    D  ++T + +R  +    + 
Sbjct: 8   EAFDTYLKAN--RGLSENTRKAYRGDVEECLLALERLRCRDLNEVTIEDLRMWMAESSKN 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H  SS  +   ++R  F W         +P  ++  PK         ++   +Q      
Sbjct: 66  HAKSSMARKTVAVRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVD 125

Query: 188 EG-----------------SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKT 229
           E                   +     E L  +G+R ++         + +N     T K 
Sbjct: 126 EDGETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKG 185

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
                +       K +                    F+    ++++           A  
Sbjct: 186 NKQRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARD 245

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AGV   S H +R  +AT   D GA   E+    G  ++   + YT  +
Sbjct: 246 AGVPDISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293


>gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 300

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127
           +S + +       L+  +  +++   D II  +G+     +++     +RS       + 
Sbjct: 10  VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL  +        K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + +        ++++       F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 365

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 111/362 (30%), Gaps = 31/362 (8%)

Query: 1   MTP-SLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPA-----YMSALT 52
           M     R  P V   +  +G I Y F      G++  +    +S  I         +   
Sbjct: 1   MARVKSRKYPGVYLNKLANGDISYSFTYKDENGKKKWVTVGKKSAGITEVYTYNKRNEYI 60

Query: 53  GSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
                 E     +K   +  L      Y K     + +++   +   Y + I    G   
Sbjct: 61  NKVKLGEDPLRAKKLRKSKVLDEAFELYVKDRELHNKSLHDEKA--RYINHIQPTFGSTP 118

Query: 111 YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKR 166
              IT + I+   + +    ++  +    +  +  +    + +  Y   NP   V+R K 
Sbjct: 119 IAAITPEAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGLYQGSNPAKKVKRLKV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
                R  + ++++       +     L     L +G R         + +   +    +
Sbjct: 179 DNARERFLSVDEVKLLLDTVKDNPTLYLFCNLSLSTGGRLETILAIQKKDIDLESGTIKL 238

Query: 225 KTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKA-- 280
           K  K  +  T  + D    LL      +    + ++   + + + Q  +  K    +   
Sbjct: 239 KDFKNDSTYTGFINDTLHSLLKDLLPQLKANDYILSKSSKPLTSRQIQVPLKPILDRLFN 298

Query: 281 -GV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            G+           H +R   A+  A  G   + +      K ++    Y K A D  R 
Sbjct: 299 QGLQPNDRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGRE 358

Query: 332 GI 333
            +
Sbjct: 359 AV 360


>gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake]
 gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str.
           Jake]
          Length = 310

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 32/276 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSA 133
           + +       +VN+  ++    ++ +     +  R +T + + +   +           A
Sbjct: 16  WLE--KERRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQA 73

Query: 134 I-------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQ 181
                   + L++++  F++  R   V       + RPK K+   +   +          
Sbjct: 74  NVEAITNARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFHIENIVNYY 133

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    +       L   GLR S++     Q ++     I  +       + +    
Sbjct: 134 SLHDNWVFKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGEILITGKGN-KERILPILPVV 192

Query: 242 MKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKS--AHG 288
              L             N                  T F+   +    K G+  +   H 
Sbjct: 193 RNSLDEYIKFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPDTTTPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R   AT    +GA    +    G   +   + YT 
Sbjct: 253 FRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTH 288


>gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa
           Temecula1]
 gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD
 gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1]
 gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23]
 gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 324

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 35/294 (11%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122
           +  TT+   +   + K      L+ ++  S+    + + R +         +T   +   
Sbjct: 22  EDATTIAHCLDALWIKH----GLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDY 77

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R    ++P S  +  + +R  F +AV   +   NP   +  P       +  T+  +
Sbjct: 78  LTWRTQQHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQI 137

Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           +   +       EG + R   E +  +GLR S+     V  L      ++    G     
Sbjct: 138 EALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERL 197

Query: 235 VELPDGFMKLLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAKA 277
           V L +     L                           FIN + ++++  QF  W K  A
Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYA 257

Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              G+     S H +R   AT   + GA    L    G +++   + YT  A +
Sbjct: 258 ALVGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311


>gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC
 gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 300

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127
           +S + +       L+  +  +++   D II  +G+     +++     +RS       + 
Sbjct: 10  VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL  +        K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + +        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863]
 gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v]
          Length = 298

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
 gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM
           21326]
          Length = 310

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127
           +  + +       L+++++ +++   + + +     G  D+ ++ +  +R          
Sbjct: 16  LDRFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q      
Sbjct: 76  MKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +      I+          V       +
Sbjct: 136 DDPLSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVPFSGMAAE 195

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +              ++  F++    +++             K  V  + S H +R   
Sbjct: 196 WVNKWLKVRASLANSDEQALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSF 255

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G + +   + YT   D   L 
Sbjct: 256 ATHVLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 348

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y+        A+  + P++E    P             Y +
Sbjct: 23  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 74

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 75  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 134

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++    +   +       C  V R KR+       +KE++++         +    F
Sbjct: 135 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 190

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR S+        +  +     ++  K        L    MK L       + 
Sbjct: 191 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 250

Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                + +       +  S   KA A +AG+ K    H +R   AT   + G     +  
Sbjct: 251 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 310

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 311 LMGHNNIKTTERYVHIAD 328


>gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 318

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 30/302 (9%)

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITT 116
             P T    +  + +   H   ++ ++   +       +    +         D   +T 
Sbjct: 14  HAPNTASQALYAFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTP 73

Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +R+ +  R+       +S  + L+++R  FK+  RQ          V+ PKR     R
Sbjct: 74  SDVRAWLAFRRANDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPR 133

Query: 173 PWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           P ++E  +                ++       +  +GLR S++       +        
Sbjct: 134 PVSQEIAKNLLKEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADVPARDILRI 193

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKAT 278
             K   +  V L       L +    +          F     +K+N        +    
Sbjct: 194 QGKGNKVRLVPLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLRI 253

Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
             G+    + H +R   AT     GA    +    G  ++   + YT   ADR++   K 
Sbjct: 254 SMGLPDTATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKA 313

Query: 336 SR 337
           + 
Sbjct: 314 AH 315


>gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 317

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 104/296 (35%), Gaps = 24/296 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           +I +Y++      SL+ N+  ++ +  ++++           +      +   +G+    
Sbjct: 16  IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + ++ ++  F + +  +Y+  +P   +E PK   +     T E++ +  S   
Sbjct: 76  IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----------KTQKTGTI 232
              +EG + R   E L   GLR S+     +  L  +   I                  I
Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             ++L       + +    ++  F++     ++        K  A  AG+  N S H  R
Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITQNISPHTFR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH-IDRNMLRSEIIEHHPRNIKYR 310


>gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
 gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs]
          Length = 294

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 93/268 (34%), Gaps = 24/268 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPS 131
           Y        L+ N+   ++    Q +        + +      T       ++    + +
Sbjct: 11  YLD--QEKKLSKNTLECYKRDIVQYLIYIDHVVNQDLFLTNKTTVITYLLHLQKSGKSTA 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWS 187
           +  + L S+R  +K+ +  + +  +P +++E PK + +     T E++     Q      
Sbjct: 69  TISRNLASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEVDLLLSQPLEITD 128

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +G++ +   E L  +G+R ++     ++ +  N+  I+         +      ++ L  
Sbjct: 129 KGARDKAMLELLYATGIRVTELISLNLEDVNLNLGFIRCHNGSKERFIPTGSIALESLTK 188

Query: 248 TPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                   F+          N   + ++   F    KA   ++ + K  + + +R   AT
Sbjct: 189 YIENHRASFLKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITPNTLRHSFAT 248

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
                GA    +    G   +   + Y 
Sbjct: 249 HLIQNGADLKSVQEMLGHADISTTQIYA 276


>gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum
           USDA 110]
 gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC
 gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110]
          Length = 321

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 86/299 (28%), Gaps = 34/299 (11%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITT 116
               ++   ++ +         L+  +  ++     Q    +    G+      +  +  
Sbjct: 13  SADPSIAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEA 72

Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +R+ +  R+       S ++ L  +R   ++  R+    +    ++  PK      +P
Sbjct: 73  TDVRAFMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKP 132

Query: 174 WTK---------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                       ++    +      ++       L  SGLR S++     + +       
Sbjct: 133 LPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGD 192

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFK 274
               TG      +      +LA+              +           ++     +  +
Sbjct: 193 VLVVTGKGNKTRMVPVLQNVLALVQEYVSMCPYPLPAEGPIFVGARGGPLSPRIIQLAME 252

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 RLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYT-GIDSERL 310


>gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334]
 gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang]
 gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC
 gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334]
 gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23]
 gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang]
 gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W]
 gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II]
          Length = 298

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY +       +  +  ++ S   +                   +  +   + +  
Sbjct: 5   AAFQEYLE--VERQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +    +S  + ++S+R  +++  R + V  NP   VE  K+     + + + ++Q+    
Sbjct: 63  QDLARTSIARKISSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                    + R   E L  +G+R S+  +  +  +  N   +    K      V     
Sbjct: 123 VAGKTPLDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQY 182

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                      F+N   + + +            +  +  N   
Sbjct: 183 AQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIHP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292


>gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis
           C80]
          Length = 297

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
            + + ++  ++     Q  +       + R    K  R+ +          ++  + +++
Sbjct: 16  RNFSDHTLKAYHDDLAQFNQFLEQELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  +++ + Q+    NP + +  PK++    + + +E+M+   +       +G + R+ 
Sbjct: 76  LRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRVV 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+     V  L  N        K      V   +   + +         
Sbjct: 136 IELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFKP 195

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                     +N     +              + AGV     H +R   AT   + GA  
Sbjct: 196 LKSKSHPYLIVNMKGDPITERGIRYLLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
 gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14]
          Length = 293

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+        G FD  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V ++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLLDD 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL  E    +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            +K L +  I             FFI  D  ++         K   +  A + K S H +
Sbjct: 182 ELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E Y   
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYAHA 277


>gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4]
 gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4]
          Length = 321

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI---QFLT 138
            + ++++  S+ S  +       + +   +  +T   +RS +        +     + ++
Sbjct: 40  KNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKAYARNSVARKIS 99

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           SMR LF + +R+E +  N       PK+ ++      +E+M +    +   +    + R 
Sbjct: 100 SMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRA 159

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R  +  +  V  +      +    K      V +       L        
Sbjct: 160 ILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFACDALHEYIEDAR 219

Query: 254 TF------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                         F+N     +           +  +A +  +   H +R   AT   +
Sbjct: 220 VNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQKHIRPHDLRHSFATHLLN 279

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            GA    +    G + +   + YT    DR+R
Sbjct: 280 NGADLRVVQELLGHEHLSTTQVYTHVTKDRLR 311


>gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
 gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT]
          Length = 302

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 30/283 (10%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133
              + N+  ++E+   Q+         KSG    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +        E
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +   E L  SG+R ++     +  +      ++          + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195

Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                             F+N    ++         KA A +AG++   + H +R   AT
Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
                GA    +    G   +   + YT       R   + + 
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298


>gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
 gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp.
           NBC37-1]
          Length = 271

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 80/263 (30%), Gaps = 19/263 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              EY        L   +  S+     Q+          K+ T  +   + + ++   + 
Sbjct: 7   AFEEYISVTKA--LDALTISSYLGDLRQLEEAV-QKPLTKLDTTDVLKFLSTFENK-RTL 62

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189
            + L+S+   F +   Q +      + +   K      +  + E++ +         + G
Sbjct: 63  NRKLSSINTFFHFCHLQNFTHEK--IRIPMAKVPKNLPKYLSPEEIMEGISLIDRSSTIG 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----VELPDGFMKLL 245
            +      FL  SG R S++  A    +      I+  K              +     L
Sbjct: 121 LRDYALILFLYASGCRISEALNAQRSDILEGWLKIRFAKGEKERVVPLAPIAIEAVEAYL 180

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
               +     ++N   ++++        K       +  S H +R   A+     GA   
Sbjct: 181 QAQDMSSSYLWLNYRAEQLSRISAYKIVKKY-----LGVSPHVLRHSFASSLIIGGADLR 235

Query: 306 ELMATYGWKTVDQAETYTKGADR 328
            +    G  +++  + YT    +
Sbjct: 236 VVQELLGHSSLETTQIYTHIQKQ 258


>gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
 gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1]
 gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1]
          Length = 302

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 30/283 (10%)

Query: 85  GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHTP---SSA 133
              + N+  ++E+   Q+         KSG    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +        E
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPIKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +   E L  SG+R ++     +  +      ++          + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195

Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                             F+N    ++         KA A +AG++   + H +R   AT
Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
                GA    +    G   +   + YT       R   + + 
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAH 298


>gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
 gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1]
          Length = 319

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 32/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133
              + ++  +++    + +      G     ++T   +   V +             +S 
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188
            + L + R   ++      +  N   SV+  K           E+M+   +       S 
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
             + R   EFL  SG R S++    +  +         +  G      +     +     
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                     LA         F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT     GA    +    G  +V   E YTK + ++ L +  S 
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312


>gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
 gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74]
          Length = 305

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121
            +  I+ ++       SLA NS  ++    +++       D  + T   +          
Sbjct: 2   WQSYINAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPAR-TPMQVTEKELMNFLK 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +     +  S  + L+ ++  FK+ + +  +  +P   +E PK   +     +  +++ 
Sbjct: 61  YLGELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIED 120

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
             +        G++ R   E L  SGLR S+     + +       ++            
Sbjct: 121 MLAAIDLSTPGGTRDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVRLVP 180

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
             +     T    +   + L +    ++T F+N   ++++        K  A++ G+ K+
Sbjct: 181 IGEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGIKKT 240

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H  R   AT   + GA    +    G +++   E YT 
Sbjct: 241 ISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTH 281


>gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 283

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 19/277 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127
           + ++ +Y+        + N++  + SYF        +     ITT     +I   ++S+ 
Sbjct: 2   EKVLRQYKDLLIQKRYSQNTQDIYYSYFKDFCVYFQNEKLMNITTAQINSYILDLIKSKN 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S   Q + +++    +   +          + RPK++ +  +  +K++++       
Sbjct: 62  ISISQQNQRINAIK----FYYEKVMGGEKQYYELHRPKKEHKLPKVLSKKEVKIIFDVT- 116

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLL 245
              + +     +  +GLR S+        + +    I     K        L D  + LL
Sbjct: 117 SNLKHKCILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLL 176

Query: 246 AMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
                         + QK    + T  +   K  A KAG+ K+   H +R   AT   + 
Sbjct: 177 LKYYKEYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQ 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           G     +    G ++    E YT  +   +  I   +
Sbjct: 237 GTDLRYIQELLGHESSKTTEIYTHVS---KKAIDKIK 270


>gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae]
          Length = 302

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 93/284 (32%), Gaps = 27/284 (9%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L  L+ ++ +    G   +  +  S++S     + +       + T  ++R  +      
Sbjct: 5   LTELVDDFCEYLDLGLGRSPATVRSYKSDLFGFVNRFAT--LDQFTLDNVREWLAQAVAD 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  +   S++    W +R  Y  I+    +  PK +       ++  M       
Sbjct: 63  GKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERTMTNIVEKP 122

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
           +  +     + R   E L  SG+R S+ C      +     + +          V   D 
Sbjct: 123 ASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRVVPFGDQ 182

Query: 241 FMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKAGVN-KS 285
               L+    G  +  + +                 +++  Q     +    + G+   +
Sbjct: 183 ATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEHGIGGLA 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R  +AT   D GA    +    G  +++  + YT  + + 
Sbjct: 243 PHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQR 286


>gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
 gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 100/277 (36%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124
           WL   +     +  + +  +  S+     Q       + GD    ++  + +R  +    
Sbjct: 2   WLTDSFLDYLQYERNYSEETIKSYREDLRQFEEFAREEIGDSAPSEVKAELVREWIVSLM 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R +T +S  + L+S+R  +K+ +R+  VA+NP   +  PK K        + DM +   
Sbjct: 62  DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121

Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   +G +  +  E    +G+R S+      + +  +   IK         +    
Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGKRNKQRLIPFG 181

Query: 240 GFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHG 288
             +K+  M  +             FF+  + ++++ +      K   +K      +S H 
Sbjct: 182 EELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   +  A    +    G +++   E YT  
Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHT 278


>gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC
           27678]
 gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1]
 gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 306

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 92/286 (32%), Gaps = 34/286 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES--RK 127
                Y K+     L+ N+R ++    ++    +   G  D  ++T + +R  +    ++
Sbjct: 8   DAFDAYLKAN--RGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQSSKR 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H  SS  +   ++R  F W   +     NP   +  PK         ++   ++      
Sbjct: 66  HARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVD 125

Query: 188 E---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGT 231
           E               G +     E L  +G+R ++     V  +  +N     T K   
Sbjct: 126 EQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281
              V       + +                    F+     +++           A +AG
Sbjct: 186 QRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAG 245

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           V   S H +R  +AT   D GA   ++    G  ++   + YT  +
Sbjct: 246 VPDISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVS 291


>gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
 gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1]
          Length = 297

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 24/283 (8%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
           Y         L+ N+  S++      +           K T K I   +  RK       
Sbjct: 2   YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNKKSILKATRKDIEKFLSERKEQGSKSR 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           +  +   S+  L+K+ V + Y++ NP  ++E  + K       T  ++    +  +E   
Sbjct: 62  TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTD 121

Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA 246
            G + +  FE +  SGLR S+ C   +  +      +K    G     V + D  + +L 
Sbjct: 122 KGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDILQ 181

Query: 247 MTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
                     +          N    K++        K    K+ + K+   H +R   A
Sbjct: 182 RYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           T     GA    +    G   +   E YT   D   L  + ++
Sbjct: 242 THLIQHGADLRAVQRMLGHSDITTTEIYTH-VDSAHLKKQIAK 283


>gi|260467239|ref|ZP_05813415.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|319782065|ref|YP_004141541.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259029014|gb|EEW30314.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|317167953|gb|ADV11491.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 396

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 36/369 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72
           R ++GK+ Y +R      I+LP  P +  F  AY +A  G       I+ P R  P T  
Sbjct: 16  RIKNGKLTYRYRAKGMPEIQLPGKPGDPEFEVAYENATQGQHKNAVIIDLPGRALPKTFG 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGV 123
                   +  W      ++       ++ +             +     +    +R+ +
Sbjct: 76  HAARRLETTMEWLDFDEATQRKNARLIERFLSLKVDPAYPLTWRETPVEHLDADRLRAII 135

Query: 124 ESRKHTPSS-AIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           E    T  + A   L +++ L        +      +P LS+     K+     W     
Sbjct: 136 EGIFRTNRTVAKHMLVAIKKLVWVATDIEKWIKPQDDPSLSIRVRVPKSTKNPAWPIAMR 195

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------------------LQNNI 221
           + F+     G+  R  +    + G R  D                               
Sbjct: 196 ETFEERHPVGTAARTCYALGFWLGNRRGDIAALAWDDLLTEEIELFDGSLVLIEAFDFRQ 255

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKA 280
              + +  G  + + + D     L      K      N      +    S   +    +A
Sbjct: 256 KKNRNRHGGREMFIPVVDKLAAALDPLDRSKGGTVLKNGYGNPFSEKSLSGMMQHWTRQA 315

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+    + HG+R+   T  A+    A  +M   G  ++   + Y + A++ R+ +  +R 
Sbjct: 316 GIPSGYTLHGLRRTFGTYLAECNIQARAIMEAMGHSSMAVTDDYVREANKKRIAVDIARA 375

Query: 339 ISSVVDSDD 347
           I+      D
Sbjct: 376 INEREAKRD 384


>gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218]
          Length = 395

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 117/361 (32%), Gaps = 29/361 (8%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61
            +     R G+  + FR    G  + I+L          A   A             + I
Sbjct: 37  GLKMIVNRQGRKRFLFRYTLHGTKKSIQLGEYPGLDINTARQIANDHKREIALGNDPKAI 96

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              ++   T +      Y   A    L   +  S           K G      I  + I
Sbjct: 97  RDEKRNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYPKWGKKPLTDIGQQDI 153

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  ++       P++  +  + +  +F+ A+   +V  NP   + + K      R  ++ 
Sbjct: 154 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGFVDKNPGQYIRKLKENNVRQRFLSRA 213

Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230
           ++ +F    +E        A +F L +G+R  +   +  + L      N    +   K+G
Sbjct: 214 EVSRFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDGNWSLFLPHTKSG 273

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285
              TV L     +++      ++                +     F      AG+  N  
Sbjct: 274 LSRTVLLNQLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 333

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVV 343
            H +R   A+I  ++G AT +++    G ++   +  Y   A  R+R    N   +   V
Sbjct: 334 IHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREVSANVAELVGDV 393

Query: 344 D 344
            
Sbjct: 394 G 394


>gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 386

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 120/345 (34%), Gaps = 29/345 (8%)

Query: 9   PFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYIN 62
             +  E    G   Y+ R    +G  ++I+L    + +   A      + G     +   
Sbjct: 31  RGLILEVRPTGVKTYFIRYKTLRGRYKQIKLGRATDLSVNQARKLGHKILGDVAMGKDPQ 90

Query: 63  SPRKK---PTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             +K      T +  +  EY         +  + +      + +I K G     +I   H
Sbjct: 91  QEKKVLQSVPTFEEFVWHEYLPYIKSYKKSWKTDVILLR--NHLIPKFGGMHMDQIKRDH 148

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRP 173
           I S  +      + P++A + +  +R +F  A++ +   V  NP   V   +   +  R 
Sbjct: 149 IISLHQQCLLADYKPATANRLVVLLRYIFNLALKWDTAGVRTNPTKEVTLAEENNQRDRY 208

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQ 227
             K ++ +      E   P L      LL +G R S+  +A   +               
Sbjct: 209 LDKNELDRLCKALKESENPLLEPIILMLLLTGARKSEVLKAKWHNFDFERRTWQIPGTDT 268

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-N 283
           KTG   T+ L D  +++L          ++  +        F+  F++      KAG+  
Sbjct: 269 KTGKTRTIPLSDSALEVLDKIKYVDGCPYVFPN--PDTQKPFTAIFRSWDTARKKAGLGE 326

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              H +R   ++   ++G + +E+    G   +     Y   A++
Sbjct: 327 VRIHDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQ 371


>gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
 gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1]
          Length = 298

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY         +  +  ++ +   +                   +  +   + +  
Sbjct: 5   AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181
           +    +S  + ++S+R  +++ VR + V  NP   VE  K+     + +     +E  + 
Sbjct: 63  QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
            +       + R   E L  +G+R S+     +  +  N   +    K      V     
Sbjct: 123 VEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 182

Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                      F+N   + + A            +  +  N   
Sbjct: 183 AQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLIKQTSLTANIHP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292


>gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 299

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI-------- 119
               +  ++++  +  +++ N+  ++ S          +   DY+ +  K I        
Sbjct: 3   FSEAVERFKENMEFVRNMSSNTVAAYLSDLHHFELFLNERGIDYKSVKRKDIELFVKEYS 62

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +     ++ + ++  + L+++R  + +      V+  P   ++ PK +       T +++
Sbjct: 63  QGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDEV 122

Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +  S +   + G + +     + + GLR S+ C+  +  L+          +G      
Sbjct: 123 MEILSSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMSGKGNRDR 182

Query: 237 LPDGFMKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                 ++L                  ++  FI    + M           +       K
Sbjct: 183 EVPMNDQVLSIVKEYLQIRREFPMSEYEDHVFIGTRGEPMARNVIPKVLNTQVKYVYPEK 242

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               H  R   AT     GA+   +    G   +     Y    D+ +   
Sbjct: 243 RVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAA 293


>gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC
 gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75]
 gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327]
 gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ECD227]
          Length = 298

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRNLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 301

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 86/282 (30%), Gaps = 27/282 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE 124
            T+   +  Y +       L+ N+  ++                     +T   + + ++
Sbjct: 1   MTVPADVDAYLRHVAIERGLSANTVAAYRRDLAVYAGWLAVEQVTQTAAVTPATVSAYLQ 60

Query: 125 SRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       SS  + L+++R   ++ + +  V ++    +  PK  +   +    + 
Sbjct: 61  HLATRGESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQ 120

Query: 179 MQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +    +          + +   E +  +G R S++    V  + +      T K      
Sbjct: 121 VAALLAATDGDDLADLRDKALLELMYATGARVSEAVGLNVDDVIDTDVVRLTGKGAKQRI 180

Query: 235 VELPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           V L                  L+         F+     +++     +  +A A +A + 
Sbjct: 181 VPLGSYARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRADLT 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT     GA    +    G  +V   + YT
Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYT 282


>gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD
 gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58]
 gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399]
 gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385]
          Length = 291

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 306

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 85/292 (29%), Gaps = 28/292 (9%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           LI  Y +       L   +  +++    Q        D   ++T  +   +     K+ P
Sbjct: 7   LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------------PWTK 176
            +  + + S +  F +   +E +  NP   ++   R+   +                + +
Sbjct: 67  KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLRTVETILSTIYEQ 126

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIIT 234
            +  +         +     E L  +G+R S+ C   V  +     SI            
Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK--S 285
                  + +L    +   +  +N +                          A ++   +
Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            H  R   AT   +A      +    G  +++  E YT  A   +  I  ++
Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATK 298


>gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
 gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243]
          Length = 319

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 32/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133
              + ++  +++    + +      G     ++T   +   V +             +S 
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188
            + L + R   ++      +  N   SV+  K         + E+M+   +       S 
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALLAAASSPGDSN 147

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
             + R   EFL  SG R S++    +  +         +  G      +     +     
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                     LA     +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT     GA    +    G  +V   E YTK + ++ L +  S 
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312


>gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 294

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 89/277 (32%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRK 127
           WL + +     +  + +  +  S+     Q       + GD     +  + +R  + S  
Sbjct: 2   WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKFAREEIGDSALSGVKAELVREWIVSLM 61

Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +     + L+S+R  +K+ +R+  V +NP   +  PK K        + +M +   
Sbjct: 62  DKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMDKLLD 121

Query: 185 FW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
                   +G +  +  E    +G+R S+      +++  +      T K      +   
Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRNKQRLIPFG 181

Query: 239 DGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV-------NKSAHG 288
           +     +      +             + +  + S        K  +        +S H 
Sbjct: 182 EELKNAMIEYVNVRNEIVQARTDAFFVRESGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   +  A    +    G +++   E YT  
Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHT 278


>gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 317

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 30/289 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR---SG 122
           I+++         L+  + I++E    Q +R          G  D   +     R   + 
Sbjct: 21  IAKWLDHLSDERRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQ 80

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
               K    S  + L  +R   K+  R+  +      +V  P++     +P + +D    
Sbjct: 81  RRRNKVQSRSLARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDI 140

Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTII 233
                  ++     ++       L   GLR S++     +              K     
Sbjct: 141 TSGDLAMETEAWVEARNAAVLTLLYGCGLRISEALSLTGKMAPQPGTKTMRIIGKGRKER 200

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284
            V +     + +A            +           +N     +         G+    
Sbjct: 201 IVPILPAVCEAVAHYVKLCPYAISPDGPLFLGARGGPLNPRMIQLSMAKLRGALGLPETA 260

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT     G     +    G  ++   + YT+      L  
Sbjct: 261 TPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAA 309


>gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
 gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827]
          Length = 299

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 21/273 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
              ++ Y          A N+  S+     + +            +T   +   +   + 
Sbjct: 7   ADAVTAYLDHLAVERGAARNTLDSYARDLRRYLAHLESAGLGLDAVTEAVVGDFLAGLRE 66

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    SSA + L ++R L ++A R+   A +P   V+ P       +     D+ +    
Sbjct: 67  SGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLDT 126

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241
                   + R   E L  +G R S+     V  +     +     K G    V +    
Sbjct: 127 AGDTPAALRDRALLELLYSTGARISEVVGLDVDDVDAAERTALLDGKGGKQRVVPVGRPA 186

Query: 242 MKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           +  +    +              F+N    +++        K  A +AGV    S H +R
Sbjct: 187 LAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQVLKTAAERAGVAAEVSPHTLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   +AGA    +    G  +V   + YT
Sbjct: 247 HSFATHLLEAGADVRVVQELLGHASVTTTQVYT 279


>gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + LI  + +        + N+ +++ S      ++  +   +  T      GV    +  
Sbjct: 14  ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181
           ++  +   +++  +++ + +     +P  S+          +  T             + 
Sbjct: 74  NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLFVTLQQRY 133

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            ++      +     E L  SGLR S+         ++   F I   K G    V + D 
Sbjct: 134 ERAATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193

Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
               +A   +       +   + K  ++  +     K  A +A + +   S H +R   A
Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    L    G   +   + YT    +         ++  +V+S  P
Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298


>gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG]
          Length = 298

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY         +  +  ++ +   +                   +  +   + +  
Sbjct: 5   AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181
           +    +S  + ++S+R  +++ VR + V  NP   VE  K+     + +     +E  + 
Sbjct: 63  QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
            +       + R   E L  +G+R S+     +  +  N   +    K      V     
Sbjct: 123 VEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 182

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                +     F+N   + + A            +  +  N   
Sbjct: 183 AQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 292


>gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
 gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195]
          Length = 302

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 29/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFD-YRKITTKHIRSGVESRKHTP---SSA 133
              + N+  ++E+   Q++  +       G    +   T + + + +   K      ++ 
Sbjct: 16  KGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188
           ++ + + +  F + V +  +  NP  ++  PK         +   ++   +        E
Sbjct: 76  VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +   E L  SG+R ++     V  +      ++          + +     + +  
Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195

Query: 248 TPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                             F+N    ++         K  A +AG++   + H +R   AT
Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                GA    +    G   +   + YT     
Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSE 288


>gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 323

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLARHLPPVQPADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P       +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDV 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 SRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
 gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B]
          Length = 309

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 21/281 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
            +  Y +       LA +S  ++ +     +            +T   +   +   +   
Sbjct: 15  WVDRYLEHLIVAKGLAEHSIAAYSTDITSFLIFLNSHAAALETVTDDTLFLYLMHLRTRG 74

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S  + L+++R  F +A  ++++  +P   +E PK         ++ED+ +      
Sbjct: 75  LQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARLLDAPD 134

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                G + R   E L  +GLR S+        +           K        +     
Sbjct: 135 TATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKERLTPIHALAR 194

Query: 243 KLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           + L+   +     F   ++           +        KA A  AGV    S H +R  
Sbjct: 195 EFLSTYILTMRGAFHPREQFIFLNRSGQGLSRQAVWKKIKAHALAAGVSTRISPHSLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT   + GA    +    G   +   E YT       L +
Sbjct: 255 FATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 295


>gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 304

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 23/277 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRK--HTPSS 132
           Y +       A  +  S+ +  +Q I          +     + IR  ++  K  +  S+
Sbjct: 11  YLQFIDPK--AALTVASYRNDLNQYIEYLEHESVSSLESVDAEVIRKYIDDIKNDYAAST 68

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSEG 189
               +  +R   ++ +    +  +P   V    + T         T   +  F     + 
Sbjct: 69  IQHKIVVIRQFHQYLLNSGQLQHDPTAFVSLKNKGTRLPTIVSDDTIRKLFSFDRVTGKD 128

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248
                    L   GLR S+        +  +   ++   K      + L    +  L+  
Sbjct: 129 FMDYAILLLLYRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDGLSEY 188

Query: 249 PIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                  ++    +++         +        K++  + G+    SAH +R   AT  
Sbjct: 189 INIIRPQWMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSFATAI 248

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            D G     +    G + +   + YT   ++  L  +
Sbjct: 249 LDTGVDLRIIQELLGHQDISTTQIYTH-VNKKTLKRE 284


>gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
 gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160]
          Length = 315

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 37/302 (12%)

Query: 66  KKPTT--LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHI 119
             PTT  +  +++ Y         LA N+  S+     +    +  +G     ++    +
Sbjct: 2   SAPTTSAVDRVVTGYLDHLTVERGLAANTISSYRRDLRRYTEFLDAAGVRGLGEVAESDV 61

Query: 120 RSGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              + + +         + +SA + + ++R L ++A+    V  +    V  P       
Sbjct: 62  AGFLAALRQGDDDHPPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLP 121

Query: 172 RPWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
           +    E +              G + R   E L  +G R S++    V  L      ++ 
Sbjct: 122 KAIPVESVVALIEAAGALEGPRGLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRL 181

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSI 271
             K G    V +    ++ +    +          +  +              +      
Sbjct: 182 AGKGGKQRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWA 241

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADR 328
             +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT    DR
Sbjct: 242 ILRTAAERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDR 301

Query: 329 IR 330
           +R
Sbjct: 302 LR 303


>gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
 gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13]
          Length = 303

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 93/283 (32%), Gaps = 21/283 (7%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
           +L+  +  + +       L+  +++S+      +    ++ G  ++  +    +R     
Sbjct: 7   SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEMGVTEWPALDAAKVRMLAAR 66

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            K      SS    L+++R    W V Q  +  NP   +  P+      +    +++ Q 
Sbjct: 67  SKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNIDVDEINQL 126

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
            +         + R   E +  +GLR S+      +H+           K      + + 
Sbjct: 127 LNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIWVLGKGSKERKLPIG 186

Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              +  L      ++         F++N  ++++       F     K GV  +   H +
Sbjct: 187 RTAVTWLEHWLAMRDLFGPADDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
 gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705]
          Length = 299

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY         +  +  ++ +   +                   +  +   + +  
Sbjct: 6   AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181
           +    +S  + ++S+R  +++ VR + V  NP   VE  K+     + +     +E  + 
Sbjct: 64  QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
            +       + R   E L  +G+R S+     +  +  N   +    K      V     
Sbjct: 124 VEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 183

Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                      F+N   + + A            +  +  N   
Sbjct: 184 AQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYILDQLIKQTSLTANIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 293


>gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28]
          Length = 450

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 88/278 (31%), Gaps = 27/278 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+       E  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + R+  E L  +G+R S+           +    +   K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +      +               +N+    +             +KA +      H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + GA    +    G  ++   + YT    R 
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRA 288


>gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4]
 gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4]
          Length = 328

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              A N+  ++    D  +     G  D  +     +R+ + S +      SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E           
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +              F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAYLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
 gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753]
          Length = 309

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 94/279 (33%), Gaps = 26/279 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE---SRKH 128
             +Y K+     ++ N+  S+    +         +      +T   ++  +E       
Sbjct: 18  FQDYLKNQKC--VSSNTLQSYVRDIEHFSIYLAAENIDNPASVTADDLQHYIESLEKLGR 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
           + S+  + + S+R  +++ +     + NP   ++R K + +     T E+++        
Sbjct: 76  SASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLLDQPNV 135

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +G + +   E L  +G+R S+     +Q +      +  ++  +   + +    +  
Sbjct: 136 MDPKGCRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSDRIIPIYAEAVAS 195

Query: 245 LAMTPIGKETFFINN------------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
           L+          I+             +  ++    F    K  A +A +  + + H +R
Sbjct: 196 LSDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAAQARITKDITPHTLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A      GA   ++    G   +   + Y    +  
Sbjct: 256 HSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNR 294


>gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01]
 gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01]
          Length = 310

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 23/276 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+ ++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWGQVDAAWVRQLASKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q      +  
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     ++ +      I+                  + + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199

Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                       G++  F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G + +   + YT   D   L 
Sbjct: 260 VLESSQNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 103/350 (29%), Gaps = 20/350 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64
                G+ +Y      G R+R         P  +           A   +        S 
Sbjct: 34  RVWPSGRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSD 93

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123
            +K  T+      +        L   +R  +    +  I  K G +    ++   +    
Sbjct: 94  DRKAMTVTSFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFH 153

Query: 124 ESRKHTPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            S +H P  A + L  +  +F     W +RQ+ V     +   R +R+   +       +
Sbjct: 154 GSFRHIPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFLTREEYARL 213

Query: 180 QQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVE 236
                  +E       A   L  +G R  +       H+  N   ++   +         
Sbjct: 214 GNSLDEATEDMPEAARAIRLLALTGCRLREIQTLQWTHVWLNEAELRLPDSKTGAKTVQL 273

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                  L A   +    + I   K     T     ++     AG++    H +R   A+
Sbjct: 274 GTAAVDVLKATPRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFAS 333

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVV 343
            + + GA    +    G   +     Y      +  R   + ++RISS +
Sbjct: 334 DALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSAL 383


>gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
 gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4]
          Length = 300

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 88/281 (31%), Gaps = 22/281 (7%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVES 125
             I  +     +   L+  + +S+     +      + G   + ++  + +R+       
Sbjct: 7   AWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFCDRHGIQGWGELDAQKVRALVAAHHQ 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  S  + L+++R    +  R+  V  +P   V  PK K +       + + Q    
Sbjct: 67  KGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDVDQVAQLLKG 126

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                   + +   E    SGLR ++     ++ L      ++    G     V L    
Sbjct: 127 EPSDQLLLRDQAMLELFYSSGLRLAELVGLNLRELDLEAALVRVVGKGAKTREVPLGRQA 186

Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
              L      +E +   N          ++++        +    + G++     H +R 
Sbjct: 187 KAALLAWLPVREAWTPRNQDAVFVSRQGRRLSPRGVQKRLRIWGLRQGLDVAIHPHRLRH 246

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A+   ++      +    G   +   + YT   D   L 
Sbjct: 247 AFASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286


>gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
 gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2]
          Length = 300

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---V 123
           L   +  + +       L+  + ++++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVVRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP  SV  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  ++D        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVAWIEHWLDLRGLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222]
 gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222]
          Length = 310

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 23/276 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+ ++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q      +  
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     ++ +      I+                  + + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVE 199

Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                       G+   F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G + +   + YT   D   L 
Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH-LDFQHLA 294


>gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           Iowa]
 gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC
 gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC
 gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii
           str. Iowa]
          Length = 305

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 28/287 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRS 121
            T+++ LI++++K      + + ++ IS+ +     +               I T  IR 
Sbjct: 3   DTSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRL 62

Query: 122 GVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                          SS  + L++++  +++  +   +  +   S++ PK+     +  +
Sbjct: 63  IRSWLAKRNCDNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALS 122

Query: 176 KEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++D+                  + +     +  SGLR S++      HLQN  F     K
Sbjct: 123 EDDVVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGK 182

Query: 229 TGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 +            ++++L       E  F     +K+    F+          G
Sbjct: 183 GSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYG 242

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +    +AH  R   A+   + GA    L A  G K++   + YTK +
Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTS 289


>gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435]
 gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC
 gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435]
          Length = 297

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 91/265 (34%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYF---DQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + + ++  S+       +  + +       +     ++  S + S+    ++  + +++
Sbjct: 16  RNFSAHTLKSYHDDLVQFNHFLEQELINLRTFEYKDARNYLSYLYSQNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R  +++ + Q+   INP + +  PK++    + + +E+M+           +G + R+ 
Sbjct: 76  LRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFETVAKDTKKGLRDRVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G+R S+     ++ +  +        K      V   +   + +       + 
Sbjct: 136 LELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFVPFGEFCRQSIEQYLREFKP 195

Query: 255 FFINNDKQ--------KMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                            +              + AGV     H +R   AT   + GA  
Sbjct: 196 IQHTKHSFLLVNMNGAPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280


>gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG]
 gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG]
          Length = 299

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 29/291 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
               EY         +  +  ++ +   +                   +  +   + +  
Sbjct: 6   AAFQEYLT--VERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181
           +    +S  + ++S+R  +++ VR + V  NP   VE  K+     + +     +E  + 
Sbjct: 64  QALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKT 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
            +       + R   E L  +G+R S+     +  +  N   +    K      V     
Sbjct: 124 VEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRY 183

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
             + L                +     F+N   + + A            +  +  N   
Sbjct: 184 AQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           H +R   AT   D GA    +    G  ++   + YT       L  +  +
Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVT-MAHLKNEYMK 293


>gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 311

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 94/300 (31%), Gaps = 37/300 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126
           I  + ++     + A N+  ++    + +        +   +     +        +   
Sbjct: 15  IEGFLQALSADRASAANTLAAYRRDLNDVATIMQGIDKTLHNATVDDLRQAIHAWHLRRL 74

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+++R    W V       NP   ++ P       +  T+ ++       
Sbjct: 75  --SARSVARRLSALRQFMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALLKAA 132

Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
           +         + R   E    +GLR S+  +  V   + N  S+  T K G    V L D
Sbjct: 133 NALEPEAAAVRARAILEIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRERVVPLGD 192

Query: 240 GFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
                +      ++                  M   QF+   K+ A  AG+N    S H 
Sbjct: 193 AAKTAVQYWIEIRDRHAAALMSDYLFPMGDGPMTRHQFASLLKSLALAAGINPDRVSPHV 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    L    G   +   + YT              R++ +V S  P
Sbjct: 253 LRHSFATHMLNRGADLRSLQTLLGHADITTTQIYT---------ATRPDRLAGLVASAHP 303


>gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 94/295 (31%), Gaps = 22/295 (7%)

Query: 59  EYINSPRKKPTTLKWL-ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRK 113
               SP    ++L    +  + +       L+  ++ S+      I   +  +G  D+RK
Sbjct: 3   RQPASPEAPSSSLLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAIITILSAAGVVDWRK 62

Query: 114 ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +    +RS V   K       S    L+++R    W V +  +  NP   +  P+     
Sbjct: 63  LDAAGVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGISTPRAGRPL 122

Query: 171 IRPWT---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226
            +       + +           + R   E +  +GLR ++      QH+   +      
Sbjct: 123 PKNMDVDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDCQHIDLASGEVWVM 182

Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            K      + +    +  L              +  FI+N  ++++       F     K
Sbjct: 183 GKGSKERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIK 242

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            GV  +   H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 243 QGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 296


>gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RS 121
           L   +  +          +  +  ++    +Q               + I         +
Sbjct: 7   LPETVETFLAYLDGQRGASPATVRAYRRDLEQFEAVLRRRGLDMDRPQQIDREAVQGFAA 66

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178
            +  +    SS  + L+++R  F++ +++++V  NP  SV  PK++    +  T E    
Sbjct: 67  DLHRQGLRRSSVSRKLSAVRRFFRFCLQRQWVDTNPAHSVANPKQEVRHPKVLTVEQALE 126

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TI 232
            M        +G +     E L  SGLR S++ +  +  ++     ++    G       
Sbjct: 127 LMDTHLPNDPKGCRDLALAELLYGSGLRISEALQLDIDDIEPGRGVVRVVGKGGKERLAP 186

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN--KS 285
           +T        + L                     +++   + +      +  AG+    S
Sbjct: 187 LTEPGQSRLRRYLEQRRAFVVDPQEPALFLGLRGKRLQRREANRILARLSQTAGLPEEIS 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT    +GA    +    G   +   + YT 
Sbjct: 247 PHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTH 285


>gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
 gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1]
          Length = 328

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              A N+  ++    D  +     G  D  +   + +R+ + S +      SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E           
Sbjct: 87  IRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +              F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           MC40-6]
 gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6]
          Length = 322

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 89/288 (30%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRS 121
               ++       + +      LA N+  ++        Q +    D          +  
Sbjct: 29  ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAAMHDAPLDSADEAMLIG 84

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            + +R     +S+ + L+  R  + WAVR+     +P L +   K+        ++  ++
Sbjct: 85  YIAARSDGKATSSNRRLSVFRRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVE 144

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                   G+    + R   E +  SGLR S+        +  N   ++          V
Sbjct: 145 ALLGAPDVGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 204

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+      M   QF    K  A +A V  +
Sbjct: 205 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAH 264

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 265 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 311


>gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37]
 gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC
 gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37]
          Length = 299

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 95/272 (34%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
           LI  Y         L+  +  +++S   + +    +       ++  + +R  V++    
Sbjct: 7   LIDTYLNHIASQRGLSPVTITNYQSNLAEFVALLNENKVGCWTELDGQLVRLMVKTLHKK 66

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+ + ++ NP   +  PK      +  + +DM Q     
Sbjct: 67  GLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLLDID 126

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
            +     + +   E +  SGLR S+     +Q ++ +    + T K      + + D  +
Sbjct: 127 EKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLLPITDRAV 186

Query: 243 KLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
             + +    +  F I +         K++++A       +    K  +      H +R  
Sbjct: 187 ATVKIWLKIRPEFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHINPHKLRHS 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   ++      +    G   +   + YT 
Sbjct: 247 FATHMLESSGNLRAVQTLLGHADLATTQIYTH 278


>gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 304

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R I    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTINAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     V+ +  N   ++          V  
Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPF 185

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L       + +  + D+                Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 364

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 103/340 (30%), Gaps = 15/340 (4%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  F     +  R     +          L G   + ++           K L+
Sbjct: 5   KRGTVWWMSFSHNGEQFRRSTETEDRKLAIRIFDKLKGDIAEGKWFEKLPGDSYKFKDLM 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132
            +Y       + A +S    +S   Q+    G+    ++T   I      R+    +  +
Sbjct: 65  DKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKYLTELTPAMISDYKVKRRSDGVSSRT 124

Query: 133 AIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
               L +M   F  A+R+  +   NP   V++ +   +  R  T E+         +  Q
Sbjct: 125 INYELITMSHAFNLAIREWGLANENPVSKVKKDRVTNKIERWLTSEEETNLLKESPKWLQ 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                 F +++GLR S+        +     ++   +        LP     +  +    
Sbjct: 185 D--IIIFAIHTGLRQSEILDLKWSQVDMKRRTVTIHEQKNRCIDTLPLNETAMTVLKNRH 242

Query: 252 KETFFINNDKQKMN------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                +                     F     KA + N   H +R   AT     GA  
Sbjct: 243 NPELPLEGYVFPNTLGDRKGNRLLLKAFYVALKKANISNFRFHDLRHTFATRLIRKGADL 302

Query: 305 HELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSVV 343
           + +     WKTV   + Y     + +R  I+    +   +
Sbjct: 303 YTVQKLGRWKTVTMVQRYAHHHTESLRAAIEMMDDVEKPI 342


>gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073]
 gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046]
 gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227]
 gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. W3110]
 gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS]
 gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC
           8739]
 gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC
           3083-94]
 gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11]
 gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii
           ATCC 35469]
 gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a]
 gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989]
 gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39]
 gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026]
 gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9]
 gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B]
 gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412]
 gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736]
 gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC
 gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC
 gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC
 gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC
 gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC
 gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC
 gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC
 gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC
 gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC
 gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC
 gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC
 gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC
 gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC
 gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC
 gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC
 gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC
 gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073]
 gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli]
 gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Shigella sonnei
           Ss046]
 gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227]
 gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12
           substr. W3110]
 gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS]
 gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739]
 gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5]
 gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94]
 gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638]
 gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A]
 gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22]
 gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171]
 gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11]
 gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989]
 gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC
           35469]
 gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39]
 gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a]
 gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026]
 gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43]
 gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972]
 gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952]
 gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11
           str. 11368]
 gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2
           str. 12009]
 gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H-
           str. 11128]
 gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1]
 gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088]
 gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412]
 gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354]
 gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302]
 gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1]
 gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1]
 gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1]
 gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1]
 gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1]
 gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1]
 gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1]
 gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1]
 gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7]
 gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1]
 gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1]
 gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W]
 gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972]
 gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407]
 gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W]
 gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1]
 gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1]
 gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3]
 gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83]
 gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B]
 gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14]
 gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010]
 gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68]
 gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180]
 gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357]
 gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11]
 gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520]
 gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482]
 gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120]
 gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3]
 gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253]
 gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167]
 gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736]
 gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206]
 gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271]
 gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591]
 gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299]
 gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74]
 gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9]
          Length = 298

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 277

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 82/259 (31%), Gaps = 10/259 (3%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  + +      +L+  S  +++     I  +        + +  + S +   K+   + 
Sbjct: 11  LEAFIEYISVTRALSKKSVEAYKGDLSSIEDEL-QIPLINLESNSVLSFLSKYKNK-RTL 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189
            + L+++   F +  +  + A       +  K      +  + +++Q            G
Sbjct: 69  NRKLSAINAFFDFCYKSHFSAEKT--KYKFAKIPKLLPKFLSYKEIQNSLLLIDRNSWLG 126

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +      FL  SG R S+      + +++    I+  K      V +    +  ++   
Sbjct: 127 LRDYALIIFLFASGARISECLALRREDIEDGWLHIRHAKGEKERIVPVAKVALDAISTYL 186

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
             K                 S     K T+  +N S H +R   AT     GA    +  
Sbjct: 187 NEKPKENEYVWCN-YKGDALSRISAYKITQKYLNVSPHVLRHSYATSLISGGADLRVVQE 245

Query: 310 TYGWKTVDQAETYTKGADR 328
             G  ++   + YT    +
Sbjct: 246 LLGHASLLTTQIYTHIQKQ 264


>gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 310

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 99/286 (34%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   + + +     G  D+ ++    +R   
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +A     +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
 gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46]
          Length = 309

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 88/284 (30%), Gaps = 28/284 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVES---RK 127
           L+  Y          + N+  ++    D  +        D   +    +R+ V     R 
Sbjct: 11  LMQPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPASVAPAGVRAYVADLAARG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSSA + L+ +R   ++   + +   +P   V  PKR     +  +  ++    +   
Sbjct: 71  LKPSSAARRLSCIRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLLAVAK 130

Query: 188 EG-------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTII 233
           E               +     E L  +GLR S+         L    F +   K G   
Sbjct: 131 EAVARAPNPGEAARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKGGRER 190

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
                 +        L  +   G   F  +++   +    F+   KA A  AG+     S
Sbjct: 191 LVPLTDIARAAMAAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAGAAGIRADRIS 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 251 PHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDER 294


>gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + LI  + +        + N+ +++ S      ++  +   +  T      GV    +  
Sbjct: 14  ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181
           ++  +   +++  +++ + +     +P  S+          +  T             + 
Sbjct: 74  NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRY 133

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            ++      +     E L  SGLR S+         ++   F I   K G    V + D 
Sbjct: 134 DRAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193

Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
               +A   +       +   + K  ++  +     K  A +A + +   S H +R   A
Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    L    G   +   + YT    +         ++  +V+S  P
Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298


>gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I++Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  ++  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPASGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V +++   +  +                     
Sbjct: 126 AESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVRGKGDKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502]
 gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679]
 gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502]
 gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679]
          Length = 382

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 119/383 (31%), Gaps = 54/383 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL+    + +   
Sbjct: 4   IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P    TT K     + +S        +   +   +   I  K G+    KI T + +  
Sbjct: 61  MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPKFGNIKLSKINTAYCQKV 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           V       +S     F+  M  +FK+A+     + NP L++  PK + +  +       +
Sbjct: 121 VNDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKE 180

Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           Q          +      ++    F  L +SG R  +       ++      +  +KT  
Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240

Query: 232 IITVE---------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                                 K L      K  +   ND+   
Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNF 300

Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
                 +  +     +AG+     HG R   A++  +AGA   E+    G   +     T
Sbjct: 301 TINQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           YT   +  +   + ++++++ ++
Sbjct: 361 YTHITNSKK--EETTQKLTNYIN 381


>gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
 gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119]
          Length = 297

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
            + + ++  ++     Q  +       + R    K  R+ +          ++  + +++
Sbjct: 16  RNFSDHTLKAYHDDLAQFNQFLEQELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  +++ + Q+    NP + +  PK++    + + +E+M+   +       +G + R+ 
Sbjct: 76  LRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRVV 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+     V  L  N        K      V   +   + +         
Sbjct: 136 IELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFKP 195

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
                     +N     +              + AGV     H +R   AT   + GA  
Sbjct: 196 LKSKSHPYLIVNMKGDPITERGVRYLLNDVVERTAGVTEIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 295

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 109/298 (36%), Gaps = 27/298 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124
            TL+     Y K+    S +  + ++++       +  +++G F  + +I+ + +   + 
Sbjct: 1   MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAATKKFWQENGGFPGWDQISRRDLEIYLL 58

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L+S++  +++  R+  V  +P ++++  + K +    + ++++ Q 
Sbjct: 59  ATGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
               ++G     + R        +G+R S+     ++ L      I    K      V  
Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178

Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                K L                     F+N   + +++   +   +    KAG+    
Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             H +R   AT   + GA    +    G + +   + YT  + +  L ++  +     
Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTVEYRQHFPRK 295


>gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
 gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC
 gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810]
 gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466]
 gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034]
 gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037]
          Length = 310

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   + + +     G  D+ ++    +R   
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
 gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +  S       + N++ ++     + +           G     +IT   +R+ 
Sbjct: 9   RDALQHWLDSLRALAGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAW 68

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  ++++  SA    + L++++  ++W   +E       LS   PK   +  RP  ++  
Sbjct: 69  MADQRNSDVSARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                  K    
Sbjct: 129 RAMIETVELQSASDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPDTLRILGKGEKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +       +             +            N +           + G+  +
Sbjct: 189 RVVPVIPAARSAVDRYLRLCPHPQSPDAALFRGVRGGALNPSAIQGVMAKARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT   D  RL 
Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 296


>gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
 gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3]
          Length = 301

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 86/278 (30%), Gaps = 19/278 (6%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR---SGVESRK 127
               ++         L+ ++  ++    +++ ++  +   +  +T + ++   S +  + 
Sbjct: 4   EWFQKFESYLSAERQLSKHTVRNYLYELERVSKRLDETTSWLDVTREQLQGALSQIHRQG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P S    L++++    + + +  +  NP +S+  PK+     +    + +        
Sbjct: 64  LSPRSISLTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMDLDSVTHLLEIDG 123

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK 243
           +     + +   E    SGLR ++     V+ +           K      V + +  M 
Sbjct: 124 DDPLSVRDKAIMELFYSSGLRLAELAALDVKDIDFGERQVKVMGKGSKERIVPIGNMAMN 183

Query: 244 LLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSA 294
            +      ++     +    +                          +    H +R   A
Sbjct: 184 AIECWLTCRKGIVCEDGALFVTGKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++ A    +    G   +   + YT   D   L 
Sbjct: 244 THMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280


>gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           EDL933]
 gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. Sakai]
 gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. EC4024]
 gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. TW14359]
 gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC
 gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC
 gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects
           chromosome segregation at cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196]
 gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113]
 gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076]
 gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401]
 gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486]
 gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501]
 gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508]
 gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206]
 gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045]
 gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042]
 gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115]
 gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli]
 gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli]
 gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli]
 gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli]
 gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli]
 gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588]
 gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615]
 gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212]
 gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. G5101]
 gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. 493-89]
 gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H-
           str. H 2687]
 gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125]
 gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044]
          Length = 298

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G  ++++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNALS 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
 gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3]
          Length = 314

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 99/311 (31%), Gaps = 38/311 (12%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS 121
           + T ++ +IS++     +  +L   +  ++ S        I        + +++   +++
Sbjct: 5   RKTAVEQVISDFLFHCQYEKNLNEKTIYAYRSDLYMFNRYIHELYPSVVFEQVSKDMLKT 64

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDM 179
            ++    + P +  + L S++ LF +   +    +NP   +    ++        T  ++
Sbjct: 65  YLQHISTYKPKTVKRKLASLKALFNYYDFEHDDFLNPFRKLRIRFKEPYVLPTVMTCNEV 124

Query: 180 QQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           ++                   +   ++     E L  +G+R S+ C      +     +I
Sbjct: 125 KEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQATI 184

Query: 225 KTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATK 279
           K         +        +K+L                    ++++    +  K    +
Sbjct: 185 KVFGKGSKERVIQICSVEVLKILRQYQRLFAPSKCFFINRLGNRLSSQSVRLLIKRCREE 244

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            G+    + H  R   AT+  +       +    G  ++   + YT           N  
Sbjct: 245 IGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHV---------NMN 295

Query: 338 RISSVVDSDDP 348
           +   ++ S  P
Sbjct: 296 KQKKILSSKHP 306


>gi|255022087|ref|ZP_05294091.1| prophage integrase [Acidithiobacillus caldus ATCC 51756]
 gi|254968445|gb|EET26003.1| prophage integrase [Acidithiobacillus caldus ATCC 51756]
          Length = 341

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 99/317 (31%), Gaps = 20/317 (6%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  +      R  R     +          L     ++  +        T    
Sbjct: 4   KRGKTWWVDFVDASGQRVRRSAGTTDKAAAQELHDQLRAEAWRQSKL--GEAPARTWDEA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
              + +          +    E   + +         + I+ + IR  +E   ++ + S+
Sbjct: 62  ALRWLEEKTHK----ATLEKDEQQLEWLHPYLSGKKLKDISWETIRGILEIKKKETSAST 117

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A  +L  +R + + A +  ++ + P       K +    R  T+E+  +           
Sbjct: 118 ANHYLALIRGILRRANKWGWLEVLPSFEPYPVKNQRL--RWLTQEEAARLLQ--ELPPHL 173

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT 248
               EF L +GLR S+        +                   I V L +  +++L   
Sbjct: 174 ASMAEFSLLTGLRQSNVTGLEWSQVDMQRRCAWIHPDQAKARKPIPVSLNEQAVQVLLRQ 233

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                 +      + +     +  ++    +AG+ + + HG+R   A+    AG     L
Sbjct: 234 IGKHPRYVFTYKGRPVTQVT-TKAWRNALQRAGIEDFTWHGLRHTWASWHVQAGTPLLVL 292

Query: 308 MATYGWKTVDQAETYTK 324
               GW ++D  + Y  
Sbjct: 293 QQMGGWASLDMVQRYAH 309


>gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
 gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4]
          Length = 307

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 34/283 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           +  Y          A N+ +S+    ++        G  D   +T   +   V   +   
Sbjct: 6   VDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLDGRGIDDVAGVTENDVTEFVTHLRLGD 65

Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SSA + L ++R   K++  +  V ++   +V+ P    +  +    +D+ 
Sbjct: 66  KDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLPKALPLDDVI 125

Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
                             + R   E L  +G R +++    V  +     S+    K G 
Sbjct: 126 ALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282
              V +    +  +    +              F+N    +++        +  A  AG+
Sbjct: 186 QRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGI 245

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 246 KADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 288


>gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 311

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 43/302 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHT 129
           L+  + +       L+ ++ +++     Q +      G  +   +T   +R  +    HT
Sbjct: 6   LMERFIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHT 65

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178
              +S  +   ++R  F WA     +A NP  ++  PK          ++          
Sbjct: 66  VGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVD 125

Query: 179 -----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
                           +  ++  +     E L  +G+R  +     +     +  +++  
Sbjct: 126 AEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVL 185

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAK 276
            K      +       + +     G    F N +            +++          +
Sbjct: 186 GKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQ 245

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIR 330
           A +AGV   S H +R  +AT   D GA   E+    G  ++   + Y   +     DR R
Sbjct: 246 AEQAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYR 305

Query: 331 LG 332
             
Sbjct: 306 QA 307


>gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC
 gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC
 gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 295

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 109/298 (36%), Gaps = 27/298 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124
            TL+     Y K+    S +  + ++++       +  +++G F  + +I+ + +   + 
Sbjct: 1   MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L+S++  +++  R+  V  +P ++++  + K +    + ++++ Q 
Sbjct: 59  ATGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
               ++G     + R        +G+R S+     ++ L      I    K      V  
Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178

Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                K L                     F+N   + +++   +   +    KAG+    
Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             H +R   AT   + GA    +    G + +   + YT  + +  L ++  +     
Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTVEYRQHFPRK 295


>gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121]
          Length = 297

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
            + + ++  S+     Q          D      K  R+ +    S+    ++  + +++
Sbjct: 16  RNFSDHTLKSYRDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M    +  ++   +G + ++ 
Sbjct: 76  LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+      Q L           K      +   +   + +         
Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
              +  +   +N   Q +              + +GV N   H +R   AT   + GA  
Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
 gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU
           86-1044]
          Length = 301

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIR---SGVESRKHTPSSAI 134
            + + ++  ++    +   +          DF   +I  + IR   + + S+  +  + +
Sbjct: 19  KNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTIL 78

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGS 190
           + L+S+R  FKWA   + +  NP   +E PK +     P +   ++      +     GS
Sbjct: 79  RRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGS 138

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP 249
           + R   E    SGLR S+        +           K      + +    +  +    
Sbjct: 139 RDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKERVIPVTHNAVYWIQKYL 198

Query: 250 IGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
              E  F   +           +++       FK    K+G+  N + H +R   AT   
Sbjct: 199 RHPERKFSCEENHAIFLNKLGTRLSVRSVDRNFKRYLIKSGLGGNVTPHTIRHTIATHWL 258

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           + G     +    G +++     YT  
Sbjct: 259 ENGMDLKTIQTLLGHESLSSTTIYTHV 285


>gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
 gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK 127
             I  +  +      LA N+  ++ S   +  +                 H+++   +R 
Sbjct: 5   DAIDAFLDALWLEDGLARNTLAAYRSDLTRYAQWLHAQQPAVALDDTAEHHLQAYFAARH 64

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA + LT +R  F WA+R+  ++ +P   +   +      +  T+  ++     
Sbjct: 65  AQTRATSANRRLTVLRRYFHWALRERRISADPTARLAAARVPLRVPKTMTETQVEALLQA 124

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
              G+    + R   E +  SGLR ++       HL  +   ++    G     +     
Sbjct: 125 PDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLLPFGVE 184

Query: 241 FMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             + L                 +  F+      M    F I  K  A  AG+    S H 
Sbjct: 185 AGQWLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITVPLSPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +     YT  A + 
Sbjct: 245 LRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQR 285


>gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
 gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4]
          Length = 328

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              A N+  ++    D  +     G  D  +   + +R+ + S +      SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E           
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +              F   ++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 376

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWTQEKE-SS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +      + +      I  Q+T                    +     +   +LL
Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMRELL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 K+  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349


>gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 26/294 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + LI  + +        + N+ +++ S      ++  +   +  T      GV    +  
Sbjct: 14  ESLILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYAR 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---------DMQQ 181
           ++  +   +++  +++ + +     +P  S+          +  T             + 
Sbjct: 74  NTVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRY 133

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            ++      +     E L  SGLR S+         ++   F I   K G    V + D 
Sbjct: 134 ERAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDR 193

Query: 241 FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
               +A   +       +   + K  ++  +     K  A +A + +   S H +R   A
Sbjct: 194 ATDAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFA 253

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   + GA    L    G   +   + YT    +         ++  +V+S  P
Sbjct: 254 THLLEGGADLRVLQLLLGHADISTTQIYTHVDSQ---------KLVELVNSRHP 298


>gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
 gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein
           [Carnobacterium sp. AT7]
          Length = 299

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 93/288 (32%), Gaps = 27/288 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
              T K +  +Y  +      +  ++ ++E             GD ++  +T + +R  +
Sbjct: 2   VDQTAKTIFLQYLITE--RHYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQDVRIYL 59

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +  + +S  + ++SMR  +++ ++ + V  NP   +   K+     + + +++M 
Sbjct: 60  GELNEQGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMD 119

Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235
                         +     E L  +G+R S+     ++ +  ++  +    K      V
Sbjct: 120 ALFEAVKGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYV 179

Query: 236 ELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGV- 282
                    +        T  +            N+    + +T           K+ + 
Sbjct: 180 PFGHYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLT 239

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +   H +R   AT   + GA    +    G  ++   + Y       
Sbjct: 240 SDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKER 287


>gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
 gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I]
          Length = 306

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 84/294 (28%), Gaps = 29/294 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  + +        + N+  ++       +           G     +ITT  +R+ 
Sbjct: 9   RDALQLWLERLGGLEDASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAW 68

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + S +++ + A    + L++++  ++W  ++E       L    PK + +  RP   E  
Sbjct: 69  MASERNSGTGARSLARKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAA 128

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                  K    
Sbjct: 129 KAVLEAVELQSETDWVAARDVAVVTLLYGCGLRISEALGLKGADAPLPQVLRILGKGRKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +       +                          N  Q          + G+  +
Sbjct: 189 RVVPVLPAARAAVDRYLELCPHPQERAAPLFRGVRGGALNPRQIQGVMAKTRAQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              H +R   AT   +AG     +    G  ++   +TYT   D   L     R
Sbjct: 249 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYT-AVDTTHLMDVYMR 301


>gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
 gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661]
          Length = 302

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR---SGVESR 126
            +  + +       L+  ++I+++      +    +       K+    +R   +     
Sbjct: 10  AVEGFLRYLKVERQLSPLTQINYQRQLAACLALLTEMKLTAWDKLDAAQVRSLAARSRRG 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S    L+++R    W + Q  +  NP   V  P+      +    +++ Q     
Sbjct: 70  GLKPASLALRLSALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLLDID 129

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT-------V 235
                  + R   E +  +GLR S+       HL   +       K             V
Sbjct: 130 LNDPLAVRDRAMLEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKERRLPIGRTAV 189

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +  + ++++  +     +  F++   ++M+A      F     K GV  +   H +R   
Sbjct: 190 QWMEHWLEMRELFAPEDQAVFLSKYGKRMSARNVQKRFAEWGAKQGVSSHIHPHKLRHSF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 250 ATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45]
 gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45]
          Length = 327

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 99/284 (34%), Gaps = 14/284 (4%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +    +  T++  + E+ K          +   +ES    ++++  +     +T   + 
Sbjct: 33  WSYREGEAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLNKPLDALTRNLVV 92

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++     P++   +  ++R    W +  EY+  NP    +RPK +       T ++++
Sbjct: 93  EVLDK-PVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIK 151

Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232
                     + R          L SGLR ++ CR  V  +  +  +++           
Sbjct: 152 ALFKAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVP 211

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
           +T E        L         +   +  + + +   S W K +A  AG+NK    H +R
Sbjct: 212 VTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRL 331
              AT    +G     L      K+      Y     AD R RL
Sbjct: 272 HTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERL 315


>gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1]
 gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
 gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC
 gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC
 gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A]
 gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1]
 gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1]
 gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1]
          Length = 298

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTVVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
 gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606]
          Length = 308

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNAPVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 323

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 99/312 (31%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLARQLPPVQAADASV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 S-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                 G     +              ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRNRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG----------------KETFFINN 259
           +      ++          V L +     L                      +   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            ++ ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARRPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34]
 gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34]
          Length = 302

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123
           P +L+  +  + +       L+++++ +++    +I  +  +       ++    +R   
Sbjct: 3   PRSLEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIA 62

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+++R  F + V Q  +  NP   V  P++     +    ++M 
Sbjct: 63  SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+H+  +   ++          V 
Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +A     ++          F++    +++             K  V  + + 
Sbjct: 183 FSGLAREWVAKWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 382

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 110/369 (29%), Gaps = 52/369 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL+    + +   
Sbjct: 4   IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P    TT K     + +S        +   +   +   I  K G+    KI T + +  
Sbjct: 61  MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPKFGNIKLSKINTAYCQKV 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           V       SS     F+  M  +FK+A+     + NP L++  PK + +  +       +
Sbjct: 121 VNDWSEKGSSKQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKE 180

Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           Q          +      ++    F  L +SG R  +       ++      +  +KT  
Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240

Query: 232 IITVE---------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                                 K L      K  +   ND+   
Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNF 300

Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
                 +  +     +AG+     HG R   A++  +AGA   E+    G   +     T
Sbjct: 301 TINQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360

Query: 322 YTKGADRIR 330
           YT   +  +
Sbjct: 361 YTHITNSKK 369


>gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 299

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 19/275 (6%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES--R 126
           + ++ EY          +  + I++ S  + +              +   +RS V++  R
Sbjct: 6   EAVVDEYLTLLVVAADRSELTAIAYRSDLEAVATWLEARGSRLLDASPALLRSWVDAAGR 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           + +P    +  +++R LF++A R    A +P   +  P       R   ++++++     
Sbjct: 66  ERSPRGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESV 125

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +    G++ R   E L  SG+R S+ C   +  +    +     K G    V +     
Sbjct: 126 GTADVAGARDRAILEVLYGSGVRVSELCGFTLDTIAQGRWVPVVGKRGRERLVPISAPAR 185

Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             L    +          +          +      +  K +A++ G+    S H +R  
Sbjct: 186 DALEQWVVRWRPQLAPKHRMLFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVLRHS 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A    +AGA    +    G  ++   E YTK ++
Sbjct: 246 LAVHMVEAGADLRVVQEILGHASLATTELYTKVSE 280


>gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 308

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  +++      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYKRDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
 gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128
           Y         +A N+  S+     +        G  D   +T   +   + + +      
Sbjct: 20  YLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDG 79

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA + L ++R L ++A  +   AI+    V+ P       +  + +++    
Sbjct: 80  GVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALL 139

Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                 S        + R   E L  +G R S++    +  +  +  S+    K G    
Sbjct: 140 EAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRL 199

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
           + +    +  L    +                F+N    +++        +  A +AGV 
Sbjct: 200 IPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVT 259

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 260 ATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 301


>gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii
           RML369-C]
 gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC
 gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C]
          Length = 305

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 28/284 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++ LI +++K      + + ++ IS+ +     +     ++   +T  +I++       +
Sbjct: 6   IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65

Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       SS  + L++++  +K+  +   +  +   S++ PK+     +  ++E+
Sbjct: 66  WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +                  + +     +  SGLR S++      HLQN  F     K   
Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185

Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              +            +++ L       E  F     +K+    F+          G+  
Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             SAH  R   A+   + GA    +    G K++   ++YTK +
Sbjct: 246 YLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTS 289


>gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 118/383 (30%), Gaps = 54/383 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL+    + +   
Sbjct: 4   IKQYKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKT---ALSRLELELQKTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P    TT K     + +S        +   +   +   I    G+    KI T + +  
Sbjct: 61  MPTSTNTTFKEAAELWLESYKKTVKESSYSRTKIIFNKHIYPNFGNIKLSKINTAYCQKV 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           V       +S     F+  M  +FK+A+     + NP L++  PK + E  +       +
Sbjct: 121 VNDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKE 180

Query: 181 Q---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           Q          +      ++    F  L +SG R  +       ++      +  +KT  
Sbjct: 181 QLELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVA 240

Query: 232 I---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                                 K L      K  F   ND+   
Sbjct: 241 RSDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANFLFTNDENNF 300

Query: 265 NAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
                 +  +     +AG+     HG R   A++  +AGA   E+    G   +     T
Sbjct: 301 TINQAVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDT 360

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           YT   +  +   + ++++++ ++
Sbjct: 361 YTHITNSKK--EETTQKLTNYIN 381


>gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
 gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2]
          Length = 384

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 119/346 (34%), Gaps = 23/346 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++ K     R  +G+RI +   +           L G   + E+     K   TL+ +  
Sbjct: 30  KNKKYRVIVR-ANGKRI-IRTVNNLELARDIEGKLQGDIVRGEFDIEKPKSAITLQEVWE 87

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK-------- 127
           +Y            + ++ + +++  +     D     I+   I   + + K        
Sbjct: 88  KYLPWVKVNK---KTWLNDQYHYNHHLKPVFADNPLDTISPFDIEKFMVTMKKGKSKRGK 144

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  ++    +  +  L+  A +   Y   NPC  V++PK   +     T +++      
Sbjct: 145 PYAAATIKHQVVLLTRLYSVAEQWGLYSGDNPCKKVKKPKLNNQVTEFLTDDELNSLLDV 204

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGF 241
                         F L++GLR  +  +   +++     S+  +     +   LP  D  
Sbjct: 205 LEKWHNKMSAGFILFCLHTGLRRGELFKLTWENVDLTRQSMVLKDPKGKLDQTLPLSDKA 264

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +++L   P   +T +I   K     T F   +      AG+ K    HG+R   A+    
Sbjct: 265 VEVLNSLPKDYKTQWIFYGKDGKQRTDFKGPWDRIKVAAGLPKDFRLHGLRHHFASALVS 324

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
           AG   + +      K     + Y   AD+ +R  +  S  +    +
Sbjct: 325 AGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370


>gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 323

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 100/312 (32%), Gaps = 37/312 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A    L    P  +  ++       ++  +  +        +A  +  S+    + + R 
Sbjct: 7   AERRQLAQQLPPLQAADAGV-----IERFLDRFWAE---QGVARQTLESYRRDLEGLARW 58

Query: 106 --SGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                     I    +           ++P S  + L+++R  +   +R    + +P   
Sbjct: 59  RAGAGGGLLGIDRAALFDYLRLRAKANYSPRSTARLLSTLRAFYGLCLRDGMRSDDPTAL 118

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++ P+      +  T+  ++   +     +    + R   E +  +GLR S+        
Sbjct: 119 IDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVNLPAVG 178

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT----------------PIGKETFFINN 259
           +      ++          V L +     L                     G+   FI+ 
Sbjct: 179 VNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRGARPLLAANKPVAAVDGQVPLFIDA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +Q ++  QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++
Sbjct: 239 ARQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSL 298

Query: 317 DQAETYTKGADR 328
              + YT  A +
Sbjct: 299 STTQIYTLVARQ 310


>gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271]
 gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 303

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES--RKHTPSSAIQFLT 138
             L+ N+ +S+    +++I     +        I    +R  V    ++    S  + ++
Sbjct: 17  RGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYEVSKELNARSQARLIS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           +++  FK+ + ++     P   ++ PK   +     + +++    +       EG + + 
Sbjct: 77  ALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEIDAMLASIDLSTDEGHRNKA 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTGTIITVELPDGFM 242
             E L   GLR S+     +  L      I+                         +   
Sbjct: 137 IIETLYGCGLRVSELVSLRLSDLFFEEDFIRVMGKGSKQRLVPIESYTQKQINNYINNQR 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
           K L +    ++  F+N   +++         +  A   G+ K+   H  R   AT   + 
Sbjct: 197 KQLKIAKGHEDYVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLEN 256

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G + +   E Y   
Sbjct: 257 GANLRAIQMMLGHENITTTEIYVHV 281


>gi|218290869|ref|ZP_03494933.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239136|gb|EED06338.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 377

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 109/376 (28%), Gaps = 48/376 (12%)

Query: 15  RTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             + G    +     R   G+R +  +   +T   A  +           + S      T
Sbjct: 5   VRKRGNKWCFVIDVGRDEQGKRKQKWFSGFATKKEAERALAAKLQELNNGLLS--TSDMT 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +  L+ ++     +  +   +   +       I    G      +   HI++     +  
Sbjct: 63  VGKLLEDWLLDKQFH-VKPTTFELYSRIVTIHIAPMIGHLTLSDLRPDHIQNMYRMLQQK 121

Query: 130 -----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
                  +     + +R   K A++   +  +P  +VE P+     +  WT E ++ F  
Sbjct: 122 TPPLQAKTIRTIHSILRNALKRALKWGLIPRDPSEAVELPRSPRRTLAIWTPEQIRTFLA 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                 S+    F   +Y+G+R  +        +      I+  +T +            
Sbjct: 182 VNQDIDSRYYTIFVLAIYTGMRKGEILALRWSDIDFERDIIQVTRTFSWVDGEAMFLEAK 241

Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                 E  +   +L A +           D + +  +     +
Sbjct: 242 THHSNRSIAISHDVKVQLLRHREFQEQEKRLYADSYHDGNLVVARPDGEPIRLSSLQKQW 301

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           +    +AG+     H +R   A++    G     +    G   +     TY+     +  
Sbjct: 302 RHAVKRAGLPEIRFHDLRHTHASLLLLQGVHPKIVSERLGHSNISITMDTYSHVLPSLHR 361

Query: 332 GIKNSRRISSVVDSDD 347
             + +   + ++ + +
Sbjct: 362 --EVAEDFARLISNKN 375


>gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU]
 gi|294840725|ref|ZP_06785408.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059]
 gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU]
          Length = 308

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190]
 gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902]
          Length = 291

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++       +  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A +AG+   S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGYISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 329

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 100/320 (31%), Gaps = 46/320 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------Y 111
           LI ++          + N+   +        R                            
Sbjct: 6   LIDDFLDYMKSTKGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDISPDLL 65

Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR 166
             +T + I +        RK +  S  + ++S+R  + +   + + + INP + ++ PK 
Sbjct: 66  ESVTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDIDMPKV 125

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +       T +          E         +        L  G+R S+     + HLQ 
Sbjct: 126 EKTLPVYLTLDQSLNLLKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDISHLQQ 185

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFK 274
           +       K      + L +  +  +      +     +       +Q+M+        +
Sbjct: 186 DNTLKVIGKGNKERVIYLNEASVYAIEEYLKLRPQIKDDALFLSMRQQRMSNRSIQHMIE 245

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG---AD 327
                +G++    S H +R  +AT+  + G A    L    G ++V+  E YT     A 
Sbjct: 246 KHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKAL 305

Query: 328 RIRLGIKNSRRISSVVDSDD 347
           R  +      ++++  +  D
Sbjct: 306 RKMVDSNPLSKLNNYTNKKD 325


>gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c]
 gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC
 gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c]
          Length = 294

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 18/269 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129
           L+ ++    H    ++ ++  ++      +I         +   +    +++ V +    
Sbjct: 4   LVDDFFAFLHVERGMSAHTLDAYRRDIGALIAWGVQQAVGEVVALDRAQLQAFVAAEHRR 63

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFK 183
             SA    + L++ R  + W V++ ++AINP   +  PK   +  R    ++     Q  
Sbjct: 64  GLSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFVQIP 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           +    G + R   E    SGLR S+ C      +  +        K      V +    +
Sbjct: 124 TDTPLGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRVVPVGSYAL 183

Query: 243 KLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
             L           ++  F       ++A    +  K  A + G+  +   H +R   A+
Sbjct: 184 SALREWCASSGGGAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFAS 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++      +    G   +   + YT 
Sbjct: 244 HLLESSGDLRGVQELLGHADITTTQIYTH 272


>gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
 gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199]
          Length = 314

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 99/309 (32%), Gaps = 26/309 (8%)

Query: 63  SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI 119
           + +  P      I  + +        A N+  ++            +            +
Sbjct: 2   ARQAAPRGWTSAIETFLEMMAAERGAARNTLDAYGRDLMHAELWLNERGGSLETADVDGL 61

Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R+ + + +     P +A + L++ R  F++   +   A +P  +++ P+R     +  ++
Sbjct: 62  RAYLSAAEAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSE 121

Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------- 222
            D+             EG +     E L  +GLR S+        +  +           
Sbjct: 122 ADVDALLDAACDRPGPEGLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGG 181

Query: 223 --SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              +       +  +        +   T      F   + +  +   +F       A  A
Sbjct: 182 KERMVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGHLTRRRFGQLLDETAILA 241

Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           G++    S H +R   AT   D GA    +    G   +   + YT   A+R+R  ++  
Sbjct: 242 GIDPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETH 301

Query: 337 RRISSVVDS 345
             ++  + S
Sbjct: 302 HPLARSLSS 310


>gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 304

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 31/283 (10%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
           E+     +    + N+  S++   +    +    +++ I  + +   V+    T   ++ 
Sbjct: 9   EFLDYLRYEKGSSENTLSSYKRDLNLFFSEVP-KNFQSIEDEEVIEYVDKLSKTVKRNTV 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSEGS 190
           ++ + S+R  +K+    +Y+  NP  S++  KR+ +          +D+        EG 
Sbjct: 68  LRKIASIRAFYKFCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIIDAIPNTPEGV 127

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           + ++  + L+ +G R S+     ++ ++N  +       K      + +     + +   
Sbjct: 128 RDKIIIKILVATGARISEVLTLDIKDVENQDYEFIRVLGKGSKYRLIPIYSQLEEEIKAY 187

Query: 249 PIGKE--------------------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286
                                                   F    K  A  A + K+   
Sbjct: 188 IENDRKILVLERKEKESENKNKKKGHELEYKLFLGTRRENFWKRLKKYAKNAKIEKNVYP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H  R   AT+  + GA    +    G   +   E YT    R 
Sbjct: 248 HIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRE 290


>gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016]
 gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 295

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 93/275 (33%), Gaps = 20/275 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y +      ++ N+  ++    ++          + +++    I + V+  +    +   
Sbjct: 11  YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 70

Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188
            +    S+R  +K+ + +  +  NP L  E PK K    +  T +++ +          +
Sbjct: 71  IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247
           G + +   E +  +G++  +     +  +      I+ +        V +    ++ L  
Sbjct: 131 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQYLKN 190

Query: 248 TPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297
               +    I N            M+   F    K  A ++ ++K  +   +R   A   
Sbjct: 191 YLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              GA    +    G K +   + Y+    + ++ 
Sbjct: 251 LQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIA 285


>gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013]
 gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013]
 gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355]
 gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196]
          Length = 291

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 84/286 (29%), Gaps = 30/286 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHIRSGVE 124
           L+  +        + +  +  S++       D         D       ++   +R  + 
Sbjct: 4   LLDNFIIYLQLQKNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLA 63

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +      S+  + L S R  +K+  R++Y+  N    V  PK   +       E ++ 
Sbjct: 64  QMQQKGLARSTVARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQLKL 123

Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                      G +     E L  +GLR S++    +  L  +   +K          + 
Sbjct: 124 LLEAPDSTTSLGQRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERMIP 183

Query: 237 LPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                   L +                   F+NN   +++             K G+   
Sbjct: 184 FGTYAAAALKLYIKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLKSA 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S H +R   AT   D GA    +    G   +   + YT  +   
Sbjct: 244 ISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEK 289


>gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
 gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273]
          Length = 306

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 89/265 (33%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
            + A N+R S+ +   + +      D     IT + I   V +       PSS  + +++
Sbjct: 25  RNFAGNTRESYRNDLGRYLLAMQEDDVPLEAITAERINHFVLALHQAGLEPSSIARNVSA 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QP 192
           +R L ++   +  +A NP  ++ +PK+        T ++ ++        S       + 
Sbjct: 85  IRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVLEAPMLQSPPGRFLLRD 144

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251
           R   E L  SG+R ++      Q+L  +   I+          V + D     +      
Sbjct: 145 RAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKERLVPIGDAAAAWIRRYREE 204

Query: 252 KETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                 N +                       K  A  AG+ K  S H  R   AT   +
Sbjct: 205 LRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIEKNISPHTFRHTFATHLLE 264

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYTH 289


>gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 349

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 102/351 (29%), Gaps = 33/351 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+         G+   +          A       +   +  +        T++ 
Sbjct: 2   KKRPDGRYQAKVTLPGGKVKFVYGRTIREVNEAKE-----TLKMQYALGVIPDNKITVQE 56

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
              ++ ++   G    +S+  +       I    G+   + +   H+++ +        S
Sbjct: 57  WAEKWWRTVKEGKTGNSSQEGYLLAMNKYIFPALGNMKLKDVRPIHVQNLINQMGEQGKS 116

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                Q L ++  +FK+AVR   ++ NP    E  +      +  T   + +      +G
Sbjct: 117 KSLQRQVLVALNGMFKYAVRNGLISGNPAQYTEYYEVPANERQALTPAQVAELLQAC-KG 175

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV----------------QHLQNNIFSIKTQKTGTII 233
           ++  LA    LY GLR  +                      + + N       +      
Sbjct: 176 TRAELATHLALYCGLRRGEMVALKWSDLDENTRTIHVKKAVEFVNNQPKEKSPKSKAEER 235

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            + +P     +L   P        ++   +M  T      +    K     + H +R   
Sbjct: 236 IIPIPPHLWDMLQSQPKKSMFVIPSDQGTQMTKTAVRRLLEPVQKKVSFYFTWHMLRHTY 295

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           AT     G          G   +   +  YT   D      ++  + +  +
Sbjct: 296 ATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQD------EHIAQAARQI 340


>gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 29/283 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGV 123
              + E+          A ++  ++E    + +              +  IT  +I +  
Sbjct: 2   DDTVREFLSYLRVERGAATSTVRAYEHDLTRYVEFLASLQPAGTAISWSHITRDNIVAFE 61

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S K      +S  + L+S++   ++       + NP   +  PK+        + + + 
Sbjct: 62  SSLKDQGLALTSRARALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLSIDTVG 121

Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235
           +             + R   E L   GLR S+ C   V  +  +   +    K      V
Sbjct: 122 RLLDSSIGDRPVDLRDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDKERIV 181

Query: 236 ELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            L     K L                      F+N    ++         +    + G++
Sbjct: 182 PLAGTAEKALCDYLEHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLRVGID 241

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + YT  
Sbjct: 242 NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHV 284


>gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32]
 gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC
 gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32]
          Length = 310

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 23/276 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++   + +       G  D+ ++    +R             
Sbjct: 22  EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+S+R  F + V +  +  NP   V  P+++    +    +++ Q      +  
Sbjct: 80  SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     ++ +      I+                  + + 
Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199

Query: 247 MT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                       G+   F++    +++        +    K  V  + S H +R   AT 
Sbjct: 200 KWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G + +   + YT   D   L 
Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH-LDFQHLA 294


>gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
 gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM
           13528]
          Length = 292

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 96/275 (34%), Gaps = 20/275 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y ++     ++ N+  ++     +      D   +   +    I + V+  +    +   
Sbjct: 8   YEETLEKKHMSKNTMDAYVRDITRFYNFIKDREENLENVEVVSIMAYVQYLQKEGRAISS 67

Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
            +    S+R  +K+ + +  +  NP L  + PK + +  +  T E++ +     +  +  
Sbjct: 68  IVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAPNLDTNK 127

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247
             + +   E +  +G++  +     +  +   +  ++ +        V +    +K L  
Sbjct: 128 GIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPIGSVAVKYLKN 187

Query: 248 TPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297
               +    I N           +M+   F    K  A +A ++K+ +   +R   A   
Sbjct: 188 YLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRHSFAVHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              GA    +    G K +   + Y+    R ++ 
Sbjct: 248 LQNGADIKSVQELLGHKELSATQIYSSVIKRNKIA 282


>gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 361

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 109/352 (30%), Gaps = 38/352 (10%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
               +   G+ I       +T   A              +          +  +  Y + 
Sbjct: 3   QVRVKDYTGKTIHKKKRGFTTKKEALEWERDFLNKANADMG------MLFQDFVDLYFED 56

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQ 135
                L  ++ IS       +I+   G     +IT K IR           K+    A  
Sbjct: 57  MKHR-LKESTIISKRYMVDKKILPVFGKIPINEITPKDIRKWQNGLTAYRDKNGKPYAQT 115

Query: 136 FLTSMR----VLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +L ++      +F +AV+   +  NPC  +    K   E ++ WTK + +QF +   +  
Sbjct: 116 YLRAINNQITAMFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEFEQFITAVQDKP 175

Query: 191 QPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFSIKTQKTGTIIT 234
               AF  + Y+G+R  + C                    Q +         +   +   
Sbjct: 176 ASYTAFMTMYYTGMRVGELCALTPADVDLKNNTIAISKTFQRINGKDVIWAPKTPKSNRV 235

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           + +P      L            N+          +        K+GV K   H +R   
Sbjct: 236 ITIPQTLADCLKTYMDKCYEIQPNDRLFPYTKHFLNHEMLRGCKKSGVKKIRVHDLRHSH 295

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
           A++  + G     +    G + +     TY+      +   + ++++ ++++
Sbjct: 296 ASLLIEMGCQPLLIADRLGHEKIQTTLNTYSHLYPNKQ--AEVAQQLENLIN 345


>gi|73662825|ref|YP_301606.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC
 gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 296

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 87/275 (31%), Gaps = 21/275 (7%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT--- 129
             Y          + ++  S+    +Q          D      K  R+ +         
Sbjct: 6   QAYLYMLKVEKQFSEHTLKSYHDDLEQFNVFLAQEHLDLNAFEYKDARNYLSYLYSKNLK 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185
            +S  + ++++R  +++ + Q+   +NP + +  PK++      + +E+M       ++ 
Sbjct: 66  RTSVSRKISTLRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEMEALFDTVEND 125

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244
             +G + R+  E L  +G+R S+      Q +           K G    +   +   + 
Sbjct: 126 AKKGLRDRVILELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGGKERFIPFGEFCKQS 185

Query: 245 LAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSA 294
           +               +   +N     +              + AGV     H +R   A
Sbjct: 186 MERYLASFKPKLNSNHDYLLVNMKGDPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    + +  G   +     YT   +  
Sbjct: 246 THMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQ 280


>gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228]
          Length = 312

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 35/301 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSG 122
               +++++K        +  +   + S  +Q+ +          DF   ++    I   
Sbjct: 9   FLQALNKFKKYLKVEKGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRLDISEF 68

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKE 177
           +        +   +  + L ++R  +K+ +    V  NP  ++E               +
Sbjct: 69  LADAVIINDNKAVTRNRKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLEPIYLKLK 128

Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
           + +QF +  SE       +     +  LY+GLR S+       +L     SIK       
Sbjct: 129 EAKQFINAISENGGINRLRDLAIVKLFLYAGLRISELVNLDFDNLDFEDCSIKFYGKGNK 188

Query: 232 IITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              V L    +  +                 ++  FI+   ++++     ++ K  A K+
Sbjct: 189 ERYVPLHHDVILAIKKYLPERNSIKIKENDARQAIFISRHGKRISPRTIQLFVKKYAKKS 248

Query: 281 GV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
           G+      + H +R   A+           +    G   +   + YT    +  +  I  
Sbjct: 249 GLGRADKITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308

Query: 336 S 336
            
Sbjct: 309 M 309


>gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536]
 gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC
 gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       L+  + ++++   +       ++G   +++     +R+     +   
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             A      L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
 gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1]
          Length = 310

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 94/284 (33%), Gaps = 24/284 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            +  +         L+  +  ++ +            G  D  ++  + + + +      
Sbjct: 4   FLDTFIAFIRAERGLSGKTVDAYAADLTVYFEDLRARGVLDVARVKQEDVTAHLMQLGAR 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
                S  + L ++R   ++ + +++   +P   ++ P+   +     T E+++Q  +  
Sbjct: 64  GLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAP 123

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 G + +   E L  +GLR S+ C  G+  +Q     +  +        V +    
Sbjct: 124 DERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGSVA 183

Query: 242 MKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ +     G     +   + +               F    K  A KAG+ K  S H +
Sbjct: 184 VEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPHKL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R   AT   + GA    + A  G   +   + YT         +
Sbjct: 244 RHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAV 287


>gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
 gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           LI ++     +  + +  +  ++    DQ  R       G FD  +I +  +RS + S  
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVSLM 61

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
               +P S  + L+S++  FK+ +++  V+ NP   V  PK K                 
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   EG + RL  E L  +G+R S+        +      +K         +    
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L +                FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + +    G  ++     YT  
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278


>gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
 gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361]
          Length = 292

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 25/288 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           I ++     +    +  +  S+               G   +  + +  IR  +E     
Sbjct: 2   IEKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNGQLSWESVDSDVIRDWMEGMMDR 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  + L+++R L+++A+  + VA +P   ++ PK++    +   + +M +     
Sbjct: 62  GNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENEMDRLLDDM 121

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             GS     + +        +G+R S+      +    +      T K      +   D 
Sbjct: 122 EWGSGYKDVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKVTGKGNKQRIIPFGDE 181

Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK-AKATKAGVNK-SAHGVR 290
             K L      +                  +M + Q     K   A    + K + H +R
Sbjct: 182 LEKTLRWFVETRNREVERTGNALFVTEEGVRMTSQQVRQEVKARLAQVCTLKKLTPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
              AT   + GA    +    G ++V   E YT    ++++   K++ 
Sbjct: 242 HTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAH 289


>gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 300

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---VESRK 127
           +S + +       L+  + ++++   D II  +G+     +++     +RS       + 
Sbjct: 10  VSRFLRYLDVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL  +        K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + +        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 357

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 118/344 (34%), Gaps = 17/344 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + RHG+   Y RK         +P   + FI      +       +   +P++KP  L  
Sbjct: 13  KDRHGRWRCYHRKSRTPIDLARFPLGSAEFIAECARIVA-----LKEAQTPKEKPGALGM 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           LI +YR S  +  L+  ++  ++ +FD +     D    +     +    +         
Sbjct: 68  LICDYRASPAFLDLSARTQADYQKHFDYLRP-IADTPLARFDRPLVVRIRDKAAAAKGRR 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                  ++ V+F W   + Y+A NP   ++  +R              +  +       
Sbjct: 127 FGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWSDAERHAVLDAAPA 186

Query: 192 PRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             L A   ++ +GL   D+      H ++   + K  KTG  +   +P+    +L   P 
Sbjct: 187 HMLPAIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWPVPEPLDAILRAAPR 246

Query: 251 GKETF-FINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGAT 303
                   ++  +      F   ++    +       G   + +G+R   A I  +AG  
Sbjct: 247 HDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGLRHTVAVILREAGFD 306

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              +    G KT++ A  Y +GAD             + ++   
Sbjct: 307 ERTIADALGQKTIEMARRYARGADLRPKMRGVVASFDAELNKRR 350


>gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280]
 gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F A   K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAAWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
 gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835]
          Length = 300

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 78/284 (27%), Gaps = 30/284 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVESRK 127
            ++ +        + ++   +     Q             +    ++     +   +   
Sbjct: 10  QDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAA 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +  S      ++R  +++ +R+  +  NP   V  P+RK       T   M +      
Sbjct: 70  TS--SIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPY 127

Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITV 235
                         +     E     G+R S+     V  + +         K      +
Sbjct: 128 KTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERIL 187

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS--AHG 288
            +    +  L            +         +++A    +        + +  +   H 
Sbjct: 188 PVGTPALAALETYVSMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPHK 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   +AGA    +    G  ++   + YT    R R+ 
Sbjct: 248 IRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVT-RARMA 290


>gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
 gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10]
          Length = 320

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 27/288 (9%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS 121
               ++       + +      LA N+  ++        +      D          +  
Sbjct: 27  ASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATHDAPLDSADEAMLIG 82

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            + +R     +S+ + L+  R  + WAVR+   + +P L +   K+        ++  ++
Sbjct: 83  YIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVE 142

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                   G+    + R   E +  SGLR S+        +  N   ++          V
Sbjct: 143 ALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLV 202

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--N 283
              +     +                    F+      M   QF    K  A +A V  +
Sbjct: 203 PFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAH 262

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 263 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 91/287 (31%), Gaps = 35/287 (12%)

Query: 85  GSLAVNSRISFESYF----DQIIRKS----GDFDYRKITTKHIRSGVES----RKHTPSS 132
              + ++   ++         + ++      + +   I    +   +      + ++P +
Sbjct: 21  RGYSESTVNHYKHDLSVFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPEA 80

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
             + L S+R  F++  ++  +  NP  S+E              +++M+++         
Sbjct: 81  RNRKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAIKNYNS 140

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
              S+     +  LYSGLR S+     +  +     SIK          V L    +  +
Sbjct: 141 KYCSRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLHQEALTAI 200

Query: 246 AMTPIGKETFFINND-----------KQKMNATQFSIWFKAKATKAGV----NKSAHGVR 290
                 +      N            +++++        K  A KAGV      + H +R
Sbjct: 201 KDYLPDRNKITPKNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNASKITPHKLR 260

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
              A++          L    G   +   + YT    ++ +  I   
Sbjct: 261 HTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDEM 307


>gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
 gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121]
          Length = 307

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 34/283 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           +  Y          A N+ +S+    ++        G  D   +T   +   V   +   
Sbjct: 6   VDSYLDHLAVERGSARNTLLSYRRDLNRYAEYLNGRGIDDVAGVTENDVTEFVTHLRLGD 65

Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175
                     SSA + L ++R   K++  +  V+++   +V+ P    +  +        
Sbjct: 66  KDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLPKALPLDDVI 125

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
                             + R   E L  +G R +++    V  +     S+    K G 
Sbjct: 126 ALLDASGGGAAGDGPRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282
              V +    +  +    +              F+N    +++        +  A  AG+
Sbjct: 186 QRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGI 245

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 246 KADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 288


>gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 370

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 108/365 (29%), Gaps = 43/365 (11%)

Query: 17  RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G          R  +G+R +  +    T   A   AL     K E          T+ 
Sbjct: 7   KRGSTYSIVVDIGRDENGKRKQKWFSGYKTKKEA-EKALADIIAKIEKGEYFEPANMTVA 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
             ++ +  +    ++A ++   +  +   I    G     K+   HI+S   S      +
Sbjct: 66  EYLNYWLDTYPKNNVAPSTYRRYTEFAAHIKTHIGGIMMPKLKPAHIQSFYSSLLEKNLS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+ ++    + +  K AV  + +  NP  +V  P+     +R W  E  ++F       
Sbjct: 126 KSTVLKIHRMLHLALKHAVNWQIIISNPTDAVTPPRPDKVEMRVWDVETAKKFLD-DIAE 184

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---------------- 233
           +   +     L +G+R  + C    +++      +  +     I                
Sbjct: 185 TPIYIPVLLALQTGMRAGEICGLKWENIDLPRGFLMVKYALQRINGVLTLKEPKTAKSMR 244

Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                              +    L+      ++     +D +  +       F      
Sbjct: 245 TIALMDYTVQALKEHKRKQNKTKLLMGSAYNDQDFVCAWDDGRPYDPHYLGQKFTKLIKL 304

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G  K   H +R   AT+    G     +    G   +    +TY+       +  +   
Sbjct: 305 LGYPKIRFHDLRHTHATMLLQQGINPKIVSERLGHSQISVTLDTYSHVLPN--IQKEAVS 362

Query: 338 RISSV 342
           +I  +
Sbjct: 363 KIEEL 367


>gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens
           FZB42]
 gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42]
          Length = 305

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
              L  EY +     + +  + +++ +  ++           G  +      +   +   
Sbjct: 8   FLKLFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGMKEAAYHDVRIFLTEAY 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   +++      
Sbjct: 66  EKGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFA 125

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                   G + +   E L  +G+R S+ C   V  L   + ++    K      +    
Sbjct: 126 VSDRSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYIPFGS 185

Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                L +                    F+N     + A            KA   ++  
Sbjct: 186 YARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 288


>gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
 gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   + II  +   G  ++++     +R+       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIGKGSKERRLPIGRNALS 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM
           3091]
 gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 316

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 21/274 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRK---ITTKHIRSGVESR 126
            +  + +Y         + N+  +++S  D   +    D   +    +     R     +
Sbjct: 11  FEDQVEDYILEMDIQGYSSNTLKTYKSILDNFYKFILSDRKIKDEKGMLRAFKRYLQYLK 70

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    S          ++  F++A    Y  I      +   +       +     +  +
Sbjct: 71  REKEVSTNYIYLVTVVLKKFFEFAEIHIYEEIKAPKRTKSLPKSLNEQEVYDLIHAKDNE 130

Query: 184 S-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                         + +L    L  +GLR S+  +  V  +  N  +I+ +        V
Sbjct: 131 YDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKLKVTTIDENERTIRVRGKGDKDRIV 190

Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
              +       + L    +  E  F+N     +++    +  K  A  AG+ +  + H +
Sbjct: 191 IFDEDTLDLIHEYLDKRGVENEYLFVNQRNTSLSSRYIQLMIKEYAKDAGITRRVTPHIL 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT     G     +    G   +   + YT
Sbjct: 251 RHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 284


>gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
 gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9]
          Length = 315

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 97/291 (33%), Gaps = 38/291 (13%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              + ++ +S     + + ++  +++     +I    + D  K+    +R  + +     
Sbjct: 2   SKYVEQWLQSLVTEKNSSPHTVAAYKRDLQHLIDIFPEKDLSKLNNMDVRQAIATLHSRD 61

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
             P S  + L+S R  +KW   +  + INP L ++ PK      +  T ++ +       
Sbjct: 62  FNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLLDVGL 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
           Q     +  ++ +  FE L  SGLR S+     +++ ++     K               
Sbjct: 122 QTDDNSAVHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHELTVIGK 181

Query: 230 -GTIITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKA 275
                 V L +   + +      +                F+    ++++     +  K 
Sbjct: 182 GNKPRIVPLGEKAEEAILHWLNRRIELEGPKTSASDKCALFLGAQGKRISTRVVQLQLKK 241

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A K  +      H +R   A+    +      +    G   +   + YT+
Sbjct: 242 LALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTR 292


>gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  ++ S+         I+  +G  D+R++    +RS V   K   
Sbjct: 20  VDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRRLDASGVRSVVSRSKRDG 79

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R    W V +  +  NP   V  P+      +    ++  +      
Sbjct: 80  LHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPKNMDVDETNRLLEINL 139

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + R   E +  +GLR ++      QH+   +       K      + +    + 
Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVT 199

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  FI+N  ++++       F     K G+  +   H +R   A
Sbjct: 200 WLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGINSHVHPHKLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296


>gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14]
 gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14]
          Length = 293

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 92/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128
           +I ++     +  + +  +  S+              D    +  + +  +R  +E    
Sbjct: 2   IIEDFLDYLQFELNRSERTVQSYGDDLRAFQSYFEGLDDHLSWESVDSDVVRGWIELMMD 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +SA    + L+++R  +++A+ ++ V  +P   ++ PKR     +   + +M      
Sbjct: 62  KGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALLDT 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
              G      + R        +G+R S+        +         T K      +   +
Sbjct: 122 AMHGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQRIIPFGN 181

Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289
                L +    ++ F        F++N   ++N  Q     +   ++      +S H +
Sbjct: 182 ELASALTIYMKLRDEFIGNTSLALFVSNKGCRLNGNQVRYLVQKNLSRVSTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    L    G  ++   E YT  
Sbjct: 242 RHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHT 277


>gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 384

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 114/342 (33%), Gaps = 25/342 (7%)

Query: 9   PFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
             +  E    G   Y+ +    +G  ++I+L      +   A   A             P
Sbjct: 31  KGLMLEVRPTGIKTYFLKYKTPRGGYKQIKLGRNSFLSVEQARDIA-AKVLADVAMGKDP 89

Query: 65  RKKPTTL-------KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           + +  TL        +  + Y    +      + +         ++ K G     +IT  
Sbjct: 90  QDEKKTLKVVPTFEDFAWNSYL--PYVQGYKRSWKSDLSFLRTHLVPKFGKLHLDQITRD 147

Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIR 172
            I +  + R      P+SA + +  +R +F          V +NP   V   +   +  R
Sbjct: 148 DIMAMHQERLKNGAAPASANRLVILLRYMFNLAIQWETPGVTVNPTKGVPLAEENNQRER 207

Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             T+E++Q+      E   P L      L+ +G R S+   A  + L       +   T 
Sbjct: 208 YLTEEEVQRLCKAVKESENPLLEPIISMLILTGARKSEVLNAKWEDLDLERKRWRIPYTK 267

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSA 286
                TV L +  +++L   P  + + +I                +     K+G+ +   
Sbjct: 268 SGKPRTVPLSESALEVLRSVPKVEGSEYIFPSPVTGKPFNSIYNSWNTARIKSGLEDVKI 327

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   A+   +AG   +E+    G   +     Y+  +D 
Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDE 369


>gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
 gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 28/287 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK- 127
           I ++ +      + + ++  S+    +     +      +  +  IT   IR+ +   K 
Sbjct: 8   IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++  + + ++R  +++  R+  V  NP   V  PK + +      + ++ +    
Sbjct: 68  DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                 G +     E L  +G+R ++        +   + F I   K      V +    
Sbjct: 128 PADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRTA 187

Query: 242 MKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
              L                    +  FIN+    +                 V    S 
Sbjct: 188 AAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKKVSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   + GA    +    G   +   + YT         +
Sbjct: 248 HTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAV 294


>gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus
           10329]
          Length = 310

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 99/286 (34%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P++L+  +  + +       L+++++ +++   + + +     G  D+ ++    +R   
Sbjct: 10  PSSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
 gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937]
          Length = 302

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
              + +       L+  ++ S+      II      G  D++ +    +R+ V   K   
Sbjct: 11  AEAFLRYLRVERQLSPLTQSSYAHQLQVIIDMLSASGIADWQALDAAGVRAVVARGKRDG 70

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  Q L+++R    W V +  +  NP   V  PK      +    ++M +      
Sbjct: 71  LNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLLDIDL 130

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR ++       H+  ++       K      + +    + 
Sbjct: 131 SDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKERKLPIGATAVT 190

Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      ++ +   +D         +++       F     K GV  +   H +R   A
Sbjct: 191 WLRNWLAIRDIYAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
 gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 94/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  +   + +   ++ +      GD     +  + +R  +     
Sbjct: 3   LTDSFLDYLLYERNYSEGTVKYYRADILELQKFGEEMLGDLTPSDVDAELVREWITFLMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++  + L+S+R  +++ +++  VA++P   +  PK+K        + +M +    
Sbjct: 63  KGCASNTVNRKLSSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLLDD 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + R+  E    +G+R S+      + +  +   IK         +   D 
Sbjct: 123 IDFGEGFKGCRDRMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQRLIPFDK 182

Query: 241 FMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
            ++L     +           +    + N  +          K  +        +S H +
Sbjct: 183 ELELSMRKYVNVRNEAIPIRTDAFFVRKNGRRLYRSIVEYLVKRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEIYTHT 278


>gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           MC0-3]
 gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3]
          Length = 306

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R       +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292


>gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042]
 gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112]
          Length = 298

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRK 127
           +  Y +       L+  + ++++   +       ++G   +++     +RS       + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRSFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3]
          Length = 312

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 22/283 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  ++ +Y     +    + ++  ++     ++I      G   +       IR  + + 
Sbjct: 8   LNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTA 67

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + T   P S  + L+S R  F + ++Q  V +NP   +  PK   +       + + Q  
Sbjct: 68  RKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVL 127

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL 237
           +           + +   E     GLR ++     V  +     S I T K      + +
Sbjct: 128 NATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPI 187

Query: 238 PDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
               +  L                  FIN+  Q+M      +     A   G +   H +
Sbjct: 188 GRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHGQHIHPHML 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   A+    +      +    G   +   + YT   D   L 
Sbjct: 248 RHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTH-LDYQHLA 289


>gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
 gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 91/280 (32%), Gaps = 28/280 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             ++ +Y          + N+  ++     + +      G     ++T   I   +    
Sbjct: 3   ARVVRDYLDHVTVERGHSANTIAAYRRDLGRYLDWLSETGLDALSQVTAADIGGYLARLS 62

Query: 128 H--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +  S  +  +++R L ++A+ +     +P  ++  PK      +    +++
Sbjct: 63  QGDDEHPGLSARSIARATSALRGLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDEV 122

Query: 180 QQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
            +            G +     EFL  +G R S++  A +  L  +  +++   K G + 
Sbjct: 123 ARLLEAAAILDNPTGLRDTALVEFLYGTGARVSETIGADIDDLDFDAAAVRLRGKGGKVR 182

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAG--VN 283
            V L    ++ L          +     +         +         +  A +AG  V+
Sbjct: 183 VVPLGGYAVRALENYLTRARPSWTPGHPKLFVNSRGKPLTRQGVFFILRGLADRAGMAVD 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R   AT   D GA    +    G   V   + YT
Sbjct: 243 LGPHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYT 282


>gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
 gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum
           UW551]
 gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2]
 gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 24/282 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH- 128
             I  +  +      LA N+  ++        +          +     +     +R   
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEE 76

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+A +  T  +  F+WA+R+  V  +P   +   K+     +  ++  ++   +   
Sbjct: 77  SRASTANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPD 136

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             +    + R   E +  SGLR S+        +  N   ++           V      
Sbjct: 137 VDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              L        T           F+    + M    F    K  A +A +    S H +
Sbjct: 197 GDWLRRYLRDGRTALLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADIHAPLSPHTL 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria
           AMMD]
 gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133
           + +      LA N+  ++        +      D          +   + +R     +S+
Sbjct: 42  WLEH----GLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSS 97

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+ + + +P L +   K+        ++  ++        G+   
Sbjct: 98  NRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLG 157

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 158 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 217

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 218 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 277

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 278 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 311


>gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
 gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris
           FB024-16]
          Length = 319

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133
              + ++  +++    + +      G     ++T   +   V +             +S 
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188
            + L + R   ++      +  N   SV+  K           E+M+   +       S 
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
             + R   EFL  SG R S++    +  +         +  G      +     +     
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                     LA     +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT     GA    +    G  +V   E YTK + ++ L +  S 
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312


>gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
 gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii]
          Length = 317

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 90/278 (32%), Gaps = 29/278 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            + +  +  ++ S   Q    +       G      +T   IR  + +R  T    +S  
Sbjct: 16  QNASSQTIRAYTSDLAQFHAFALGVQQPGGTLVPESVTPALIREFLAARDRTGDKKTSLA 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190
           + L  +R  F++ VR   + +NP   V  PK      +  TK+D    M+        G 
Sbjct: 76  RKLACLRSFFRYLVRIGQLDVNPAEDVRAPKLPKHLSQVLTKDDAGALMEFPGGTERVGL 135

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP 249
           + R   E L  +G R S+        +  +   ++   K      + L    ++ +    
Sbjct: 136 RDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGRKERVIPLGIIALEAIDAYH 195

Query: 250 IGKETF-------------FINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSAT 295
              +               F N+   ++     +      + +  G     H +R   AT
Sbjct: 196 AQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYSRQLTGGAVHPHTLRHSFAT 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              D GA    +    G  ++   + YT  A    L +
Sbjct: 256 HLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLAL 293


>gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia
           J2315]
 gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 27/302 (8%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109
                      +      ++       + +      LA N+  ++        +      
Sbjct: 9   EADDDAVAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLVLFSQWLAATH 64

Query: 110 --DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                      +   + +R     +S+ + L+  R  + WAVR+   + +P L +   K+
Sbjct: 65  AAPLDGADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                   ++  ++        G+    + R   E +  SGLR S+        +  N  
Sbjct: 125 AARFPSTLSEAQVEALLGAPDIGTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271
            ++          V   +     +                    F+      M   QF  
Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A +A V  + S H +R   AT   + GA    +    G   +   + YT  A R 
Sbjct: 245 IIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303

Query: 330 RL 331
           RL
Sbjct: 304 RL 305


>gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A
           str. Hall]
 gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502]
 gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. Hall]
 gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 326

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122
           Y ++      + N+  S++       R                D + + I+ + I++   
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + +++  F++   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N+I ++  +  
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 201 -KERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           AG++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367]
 gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES---RKHTPSSAIQFL 137
              +  +  ++     + ++      G+  +  I    +   +     R +  ++  + L
Sbjct: 16  RQYSAETVKAYHEDLSEFVQFLADNGGEKPWTAIDQLDVEVYLSDLYDRHYARTTIARKL 75

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF- 196
           +++R L+ + +       +P   V+  + +    R + + +M    +  +     +LA  
Sbjct: 76  STLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTAAAANPNEQLATR 135

Query: 197 -----EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA---- 246
                E L  +G+R S+     +  +  +   +    K      V         L     
Sbjct: 136 DTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYVPFGHYASDALQTYFD 195

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            FIN+  Q++ +   +        ++ +  +   H +R   AT 
Sbjct: 196 TARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLTTDIHPHMLRHTFATH 255

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G  ++   + YT    R  L
Sbjct: 256 LLNRGADLRSVQELLGHSSLSTTQIYTHVT-REHL 289


>gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
 gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC
 gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU
           85-389]
          Length = 305

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 28/284 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++ LI +++K      + + ++ IS+ +     +     ++   +T  +I++       +
Sbjct: 6   IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65

Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       SS  + L++++  +K+  +   +  +   S++ PK+     +  ++E+
Sbjct: 66  WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +                  + +     +  SGLR S++      HLQN  F     K   
Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185

Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              +            +++ L       E  F     +K+    F+          G+  
Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             SAH  R   A+   + GA    +    G K++   ++YTK +
Sbjct: 246 HLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTS 289


>gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 350

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 119/345 (34%), Gaps = 24/345 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKREYINSP 64
             + K + +        RK    R+   Y  +      +I  Y +         EY+ +P
Sbjct: 14  GNIYKMKDKS-------RKPRAVRVTTRYTLDCKQIRKYIGTYETKREAQESLFEYLKNP 66

Query: 65  RK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +  K  T K +   + +S      +  +  + +    + +    D     I   H++  +
Sbjct: 67  KLYKKITFKEITDLWFESYKKKIGSPKTLETNKYRL-RFLEPLNDMQITDIKLYHLQKLI 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    + S      + + ++F++A + ++++ N    +E  K++    R    +   +  
Sbjct: 126 DEIDTSWSFKNGCKSVLNMIFEYAFKNDFISTNKVKFIELGKKEKVIERKIFTQKEIEIL 185

Query: 184 SFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                              L+Y+G+R  +      + +     +IK + + T   V    
Sbjct: 186 WENLNSKTYHGKYTYIILILIYTGMRIGELFNLKTEDIDLENRTIKVRVSKTSAGVRTIP 245

Query: 240 GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
            F K+  +        +E F   +   +++   F   FK    + G+   + H  R   A
Sbjct: 246 IFSKIFNLFKDNLIIGQEYFVKGDTTTQLSYATFKPRFKKLLKELGIQEHTIHDTRHTFA 305

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337
           T+  +A A +  ++   G       E  YT    + +R  ++   
Sbjct: 306 TMLNNANANSTSIIRLIGHSNFSTTENIYTHKDTEELRKAMELLN 350


>gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278]
 gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp.
           ORS278]
          Length = 327

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 84/291 (28%), Gaps = 34/291 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDF----DYRKITTKHIRSGVE 124
            ++++         L+  +  ++     Q    +    G+      +  +    IR+ + 
Sbjct: 27  AMTQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGEPVTLPRFAALEASDIRAFMA 86

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            R+       S ++ L  +R   ++  R+    +     V  PK      +P   +  ++
Sbjct: 87  MRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGVRAPKIAKSLPKPLPMDSAKR 146

Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229
                            ++       L  SGLR S++     + +         I T K 
Sbjct: 147 LTDADERAGESRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLIVTGKG 206

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV 282
                V +    + L+                         ++     +  +      G+
Sbjct: 207 NKTRMVPVLQNVLALIDEYARLCPYPLPAEGPMFLGAKGGPLSPRIIQLAMERLRGALGL 266

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 267 PDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 316


>gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594]
 gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC
 gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594]
          Length = 306

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 26/293 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              I E+          A N+  ++    +     +GD    +      R G       P
Sbjct: 5   SAAIEEFLAMLAAERGAAANTLAAYRRDLEGAEALAGDLATAR-RPALSRLGSAWSDLAP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQF 182
           ++  +  +++R  + + V +     +P  ++ RP  +    +  +         +  ++ 
Sbjct: 64  ATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVERLFEQAEREA 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGF 241
           ++      +     E L  SGLR ++     V  +  +      T K G    V +    
Sbjct: 124 ETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGVARMVPVSGRA 183

Query: 242 MKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
            + L            +   + K  +   +     K  A +A +     S H +R   AT
Sbjct: 184 REALQSWMGLRGSDSPYLFPSRKAHITRVRLFQMLKELAVRADLNPDKVSPHVLRHAFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              + GA    L    G   +   + YT           ++ R+ ++V+   P
Sbjct: 244 HLLEGGADLRVLQTLLGHADISTTQIYTHV---------DAARLVALVNERHP 287


>gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1]
          Length = 304

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 23/285 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
           TL   I  +     +   L+ ++  +++    +      ++G  D   ++   IR    +
Sbjct: 3   TLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAAA 62

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R      P S  + L+S+R LF++ VR+  +  NP   V  P+R        + ++  + 
Sbjct: 63  RHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARL 122

Query: 183 KSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVEL 237
                E      + R  +E +  SGLR +++    +  L           K      V +
Sbjct: 123 LEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRVPV 182

Query: 238 PDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                + L              +   F++    +++A          AT +GV      H
Sbjct: 183 GGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVHPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 243 MLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 286


>gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
 gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239]
          Length = 319

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 32/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133
              + ++  +++    + +      G     ++T   +   V +             +S 
Sbjct: 28  RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188
            + L + R   ++      +  N   SV+  K           E+M+   +       S 
Sbjct: 88  RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
             + R   EFL  SG R S++    +  +         +  G      +     +     
Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207

Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                     LA     +   F+N   + M+        +A A +A +++    H +R  
Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AT     GA    +    G  +V   E YTK + ++ L +  S 
Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312


>gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
 gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16]
          Length = 321

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 97/281 (34%), Gaps = 22/281 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRS 121
           K+  T +  +  + +     + A  +   +++      R   + +      K+T   I  
Sbjct: 21  KEDLTFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEE 80

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +        +    L ++R LF +  ++  +  NP   ++  K     I P++K+ 
Sbjct: 81  FAFHMMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQ 140

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTI 232
                 Q       G +  +    +L +G+R  + C+  +  +  +     I+  K G +
Sbjct: 141 LQRLFNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYV 200

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV---N 283
             V + +  +K L      +     NN      D ++++  Q   +       A +    
Sbjct: 201 RRVPISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISKRQVQNFLSQYGKGASITDVR 260

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            S H  R   A ++   GA   EL    G  +++    Y  
Sbjct: 261 CSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVH 301


>gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200]
          Length = 290

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 101/279 (36%), Gaps = 23/279 (8%)

Query: 70  TLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
           T++ LI   + +      L+ N+  ++    ++   +  +    +    +  + + V   
Sbjct: 4   TIERLIDHLWLQD----RLSANTLAAYRRDLEKTAARLSEQGKGWLDAQSGDLAAAVYRA 59

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + +P S  + L++ + L+ W +     A +P   +  PK++        +  +    +  
Sbjct: 60  EASPRSQARALSACKRLYGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAP 119

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
              +    + +   E +  +GLR S++ R      +    F     K G    V + +  
Sbjct: 120 DADTPHGLRDKALLELMYATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEEA 179

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
           +  L                 +  F++  +  ++     +  +  A  AG+ + S HG+R
Sbjct: 180 VYWLERYLAQARPQLLKNARCDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHLSPHGLR 239

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G  ++   E YT+ A   
Sbjct: 240 HAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAER 278


>gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 295

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
           L+++Y         L+ ++  +++   + I+    +   +          + I +     
Sbjct: 4   LLNQYWDYLRIERQLSPHTLTNYQHQLNAILAILAEKGIQHWQQVNPSVVRLILAESRKH 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R  F + V Q  + +NP   +  PK+     +    E +Q+  S  
Sbjct: 64  GLKEKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSND 123

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           S+     + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              +  F++    ++         +    + G+  + + H +R   
Sbjct: 184 HAIQQWLKVRPLFNPKDDAIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G]
          Length = 298

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENVLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++++A      F     K G+  +   H +R   A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
 gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38]
          Length = 580

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 16/267 (5%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           + + ++  ++   F Q +R     +  +I+ + I   + S      SA    + +  + +
Sbjct: 309 NYSSSTLRTYCGAFIQFLRYFAFRNPEEISREEIIRFLGSLMERGLSATSGHSMVNGV-Q 367

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +  +Q     +    + RPK++ +     T E+         +  + +L       +GLR
Sbjct: 368 FYYQQVLGKRDFTFVLPRPKKEKKLPVVLTMEECLL-IFKVVDNPKHKLLLLIGYGAGLR 426

Query: 206 CSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK----ETFFINN 259
            S+        +    +   +K  K      V LP   +  L +           F    
Sbjct: 427 VSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSIVSSLQLYRELYKGKLYVFEGQF 486

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +  +        +     +G+ K  + H +R   AT   + G     +    G  ++ 
Sbjct: 487 AGEPYSTGSVQQVMRTALKLSGLEKKATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIK 546

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344
               YT       L      +I S +D
Sbjct: 547 TTTVYTH------LTKTAVDKIQSPLD 567


>gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
 gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str.
           Tucson]
          Length = 303

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +++S+      +    +  G  ++  +    +R      K   
Sbjct: 12  VDAFLRYLKVERQLSPLTQLSYAHQLQALMLLAQSIGVSEWTSLDAAAVRMLAVRSKRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+S+R    W V Q  +  NP   +  P+      +    ++M Q      
Sbjct: 72  LQSASLALRLSSLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDIDL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +H+           K      + L    + 
Sbjct: 132 NDPLAVRDRAMLETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLPLGRTAVT 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F++N  ++++       F     K GV  +   H +R   A
Sbjct: 192 WLQHWLAIRELFEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 288


>gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26]
 gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26]
          Length = 327

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 14/284 (4%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +    +  T++  + E+ K          +   +ES    ++++        +T   + 
Sbjct: 33  WSYREGEAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLHKPLDALTRNLVV 92

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++     P++   +  ++R    W +  EY+  NP    +RPK +       T ++++
Sbjct: 93  EVLDK-PVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIK 151

Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTI 232
                     + R          L SGLR ++ CR  V  +  +  +++           
Sbjct: 152 ALFKAAMRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVP 211

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
           +T E        L         +   +  + + +   S W K +A  AG+NK    H +R
Sbjct: 212 VTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRL 331
              AT    +G     L      K+      Y     AD R RL
Sbjct: 272 HTFATNYLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERL 315


>gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 290

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 91  SRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
           +  S+++   Q                    I+   +R  +   +      ++  + L +
Sbjct: 11  TLSSYKTDLSQFFAFLSQKKGINPEEVGVELISHNSVRKYLAQMQEKGLSRATMARKLAA 70

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195
           +R   K+  R+  +A NP  +V  PK++ +  R     ++    +      + G + R  
Sbjct: 71  LRSFIKFLCRENILADNPIAAVSTPKQERKLPRFLYTREIDLLMNAPDLSMAAGKRDRAI 130

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  SGLR S+        +     +     K G    V L     + L +       
Sbjct: 131 LETLYASGLRVSELTNLDKPDIDFGEDYIKVLGKGGKERIVPLGSKAREALLLYLQQGRV 190

Query: 255 F-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
           +           F+N + Q+++                +    S H +R   AT   + G
Sbjct: 191 YLEAKGQASPALFLNKNGQRLSTRSIRNIINKYVETIAINQKVSPHTLRHSFATHLLNNG 250

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G   +   + YT  +   
Sbjct: 251 ADLRSVQELLGHVKLSTTQIYTHLSREK 278


>gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF]
 gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii]
          Length = 308

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
 gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1]
          Length = 310

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R I    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKQIDLRNIEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQS 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L       + +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
 gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC
 gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656]
          Length = 306

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 79/280 (28%), Gaps = 28/280 (10%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           IS Y +       L   +  ++     Q   +    D  KI +  +   +E    K+ P 
Sbjct: 8   ISSYLEYCLAQKRLDEKTIKAYRIDLIQFYNEISISDPCKIASYDLEKYIEKMHLKYKPK 67

Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           S  + + S++  F +   +   +           +      +      +++F     +  
Sbjct: 68  SVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFLFTIYKQR 127

Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITV 235
                        +     E L  +G+R S+ C   +  +      I          I  
Sbjct: 128 SAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKGSKERILQ 187

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SA 286
                 + +L           +  +          ++           A+ + ++   + 
Sbjct: 188 IGNSSVLNILKEYKNDFYNEIVQCNHFFSSQSGKPLSDQSVRRMINKYASLSSIDLHITP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H  R   AT   +A      +    G  +++  + YT  A
Sbjct: 248 HMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVA 287


>gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii
           DSM 18315]
          Length = 302

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR-- 126
           I  +     +  + +  +  ++     Q      +         ++    +R+ + S   
Sbjct: 5   IDSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVKEKKEGIFVPEEVDADIVRNWIISLLD 64

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDMQ 180
            K +P S  + L+S++  FK+ ++Q +V++NP   V  PK K         +   +    
Sbjct: 65  NKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLDG 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  EG + RL  E L  +G+R S+        +  +   IK         +     
Sbjct: 125 DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQRLIPFAE 184

Query: 241 FMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAH 287
            +K L +                FF+  + ++++        K     + +      S H
Sbjct: 185 RLKNLMLAYTEVRNREVGAGSGWFFVRKNGEQLSTGILYTIVKK--KLSDIPTLAKCSPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT   + GA  + +    G  ++     YT  
Sbjct: 243 VLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHT 280


>gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 307

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 31/287 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
             T+   I+ Y          A N+  S+     +        G     ++T   +R+ +
Sbjct: 2   AGTVDDAIARYLDHLTVERGSATNTVASYRRDLLRYNTFLAGRGVTTMSEVTEDDVRAFL 61

Query: 124 ESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +             SS  + L + R   K+   +   A +   SV  PK      + 
Sbjct: 62  VALRRGDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKS 121

Query: 174 WTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
              +D+              G + R   E L   G R S+     +  L     ++    
Sbjct: 122 LPIDDVLAILDAAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVVLRG 181

Query: 228 KTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           K G    V +    ++ +                   F+N    +++           A 
Sbjct: 182 KGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVDAAE 241

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AGV+K  S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 242 RAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYT 288


>gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
 gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158]
          Length = 316

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 27/302 (8%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSG--- 107
                +     +      ++       + +      LA N+  ++        +      
Sbjct: 9   EADGAEGAASPALLASRASIDVFCDALWLEH----GLARNTLDAYRRDLMLFSQWLAATH 64

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           D          +   + +R     +S+ + L+  R  + WAVR+   + +P L +   K+
Sbjct: 65  DAPLDAADEAMVTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQ 124

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                   ++  ++         +    + R   E +  SGLR S+        +  N  
Sbjct: 125 AARFPSTLSEAQVEALLGAPDIDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEG 184

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSI 271
            ++          V   +     +                    F+      M   QF  
Sbjct: 185 VVRVMGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWN 244

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  A V  + S H +R   AT   + GA    +    G   +   + YT  A R 
Sbjct: 245 IIKRHARHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA-RE 303

Query: 330 RL 331
           RL
Sbjct: 304 RL 305


>gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555]
 gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555]
          Length = 292

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 93/275 (33%), Gaps = 20/275 (7%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y +      ++ N+  ++    ++          + +++    I + V+  +    +   
Sbjct: 8   YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 67

Query: 136 FLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188
            +    S+R  +K+ + +  +  NP L  E PK K    +  T +++ +          +
Sbjct: 68  IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAM 247
           G + +   E +  +G++  +     +  +      I+ +        V +    ++ L  
Sbjct: 128 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERLVPIGSVAVQYLKN 187

Query: 248 TPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATIS 297
               +    I N            M+   F    K  A ++ ++K  +   +R   A   
Sbjct: 188 YLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVHL 247

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              GA    +    G K +   + Y+    + ++ 
Sbjct: 248 LQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIA 282


>gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC
 gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888);
           contains similarity to Pfam family PF00589 ('Phage'
           integrase family), score=227.1, E=2.5e-64, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 300

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  + ++++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 312

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 16/269 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  L  E+  +     LA  +   +  + ++ +  +G     +   K I   +     +P
Sbjct: 15  LSQLKEEFLIARQADGLAPRTLEDYRWHIEKFMELTGANPTYEAVRKAILQHLSE-PSSP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186
                 L  ++  F W VR+ Y+  NP   + + K     +R  + E +++         
Sbjct: 74  RYRNIKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHVSIEAVKKLLAQPDKKT 133

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242
             G +        + +G R S+  +     L  +   I  +          T+ +    +
Sbjct: 134 YAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKTRIGRTLVISPFTV 193

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKSAHGVRKFSAT 295
           + L      + +++ N      +          +S   K    +AGV  + +G+R   A 
Sbjct: 194 QALMRFLKIRPSWWSNEVPLFASENGRQLTAQRWSRIVKRYCEEAGVKVTPYGLRHTFAI 253

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
                G     L    G   +     Y +
Sbjct: 254 EFLKGGGDPFSLQRILGHTDLTMTRRYVR 282


>gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 325

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 94/295 (31%), Gaps = 35/295 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128
           LI  +          A N+  ++        +   D        T++ IR  +   +   
Sbjct: 9   LIEAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRGRSLLDATSEDIRHYLGDLETQG 68

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
             PSS+ + L+++R   ++   + + + +P L +E P+R     +  T  ++++      
Sbjct: 69  LKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLLTVSK 128

Query: 184 -----SFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232
                     G + R A    L      +GLR S+        ++     I  +  G   
Sbjct: 129 EGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGKGGRE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAG 281
             V LP    + +           +   K              +   F+   K  A  AG
Sbjct: 189 RLVPLPPVARRAITFYRDLLHQKHLGLSKGGWLFPADSETGYLSRQAFARDLKVVAAAAG 248

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           ++    S H +R   A+     GA    +    G   +   + YT   D     +
Sbjct: 249 IDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAM 303


>gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 97/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  + ++++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 300

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  + ++++   D II  +G+     +++     +RS     
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++       F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
 gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266]
          Length = 304

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 26/277 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT- 129
            +  +        + + N+R+S+ +   + +    +       +T   IR  +     T 
Sbjct: 11  YLENFLNHLLIERNFSQNTRVSYRNDLHRYLLTVQETMKPITSVTASDIRQFISELHETG 70

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++  + ++++R LF++ V +  +  NP  ++ +PK+        T E+  +      
Sbjct: 71  LEPATIARNISAIRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLLEAPI 130

Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII------ 233
                     + +   EFL  +G+R S+      Q L      ++   K           
Sbjct: 131 LQHPPGKYLLRDKAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKERLVPIGL 190

Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
               ++      +++  +    ++  F+N   +K++        +  A+ +G+ K  S H
Sbjct: 191 SAINSINRYRTELRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIEKKISPH 250

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G  ++   + YT 
Sbjct: 251 TLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTH 287


>gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum
           PYR-GCK]
 gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK]
          Length = 314

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128
           Y         +A N+  S+     +        G  D   +T   +   + + +      
Sbjct: 14  YLDHLAIERGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDG 73

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA + L ++R L ++A  +   AI+    V+ P       +  + +++    
Sbjct: 74  GVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALL 133

Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                 S        + R   E L  +G R S++    +  +  +  S+    K G    
Sbjct: 134 EAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRL 193

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
           + +    +  L    +                F+N    +++        +  A +AGV 
Sbjct: 194 IPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVT 253

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 254 ATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 295


>gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans
           Agy99]
 gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99]
          Length = 313

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 36/292 (12%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123
             TL   +  Y         +A N+  S+     +  +   D    D  K+    +   +
Sbjct: 3   TLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFL 62

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +           +  SA + L ++R L ++A  +   A++   +V  P       + 
Sbjct: 63  VALRRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKS 122

Query: 174 WTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            T +++                   + R   E L  +G R S++    V  +     ++ 
Sbjct: 123 LTIDEVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVL 182

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWF 273
              K G    V +    ++ L    +                F+N    +++        
Sbjct: 183 LQGKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVL 242

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A +A +    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 243 QDAAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090]
 gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02]
 gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18]
 gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140]
 gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1]
 gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1]
 gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332]
 gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679]
 gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035]
 gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945]
 gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02]
 gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1]
 gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332]
 gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679]
 gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035]
 gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62]
 gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 291

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 97/275 (35%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+  S+    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+   A NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T     G     +    G   ++  + YT  A+  
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVR 279


>gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
 gi|294858572|ref|ZP_06796341.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150]
 gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056]
 gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058]
 gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE]
          Length = 308

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 18/255 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              +  ++ S+  +  + +    +     +T + +   +       +++ + A Q L+++
Sbjct: 91  KGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSHAFANQALSAI 149

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +  ++ +++++ V       + RPK++       ++ ++       +   + +       
Sbjct: 150 KFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSILDSVN-NIKHKSILLLTY 204

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR  +  R  V  + ++     ++  K        L +  +  L    + ++     
Sbjct: 205 SAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWL 264

Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
                    +        F     +A V K  S H +R   AT   + G     +    G
Sbjct: 265 FPGGKENCFLTERSVQKIFSVACKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLG 324

Query: 313 WKTVDQAETYTKGAD 327
             +    E YT  ++
Sbjct: 325 HSSSKTTEIYTHVSE 339


>gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 380

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 104/361 (28%), Gaps = 48/361 (13%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPT 69
              +T  G    +   G             TF     +   +     ++           
Sbjct: 3   HIRKTESGNYEVFMDMGKDPATGKRNRISKTFNTKREAKDWVAKKRQEKTMGIGTSLTKI 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +++  +  + +      L+  +   +E      II   G    +++   HI+S    +  
Sbjct: 63  SVEKYLKRWLEDYALPKLSPTTYAGYEMIVTKHIIPALGALKLKEVKPLHIQSYQNKKLK 122

Query: 129 TPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                         + +Q    +   FK AV  + ++ NP  +V  P  +   IR  + E
Sbjct: 123 KGRLDGKEGGLSKKTVLQHHRILNRAFKQAVLWQLISYNPVKAVPAPSPEKPEIRTLSIE 182

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +++   +     S         + +G+R  +    G  H+  N                 
Sbjct: 183 EVEHLLNKAG-NSWLYYFIYVAVNTGMRRGELLGLGWNHIDFNGKTIQVTRTLVKTKKTG 241

Query: 222 FSIKTQKTGTIIT---------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
              K  K  +                      +    L           F  +D  K+  
Sbjct: 242 MVYKGPKNKSSRRVISIAEDDTKILKKLKIKQNENKLLFGPEYQNNNLVFCKSDGSKIYP 301

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +  FK  A + G+N  S H +R   AT+   AG     +    G  T+    +TY+ 
Sbjct: 302 NTTTNRFKLLAKRIGLNSVSLHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSH 361

Query: 325 G 325
            
Sbjct: 362 V 362


>gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
 gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075]
          Length = 305

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 95/306 (31%), Gaps = 42/306 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTP 130
           I  + +        A N+  S+    +    +  D          IR+ ++    R   P
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASNEI-DGGLAGAAAADIRAYLDDIAARGFAP 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           +S  + L+++R  FK+   +     +P  +++ PK+     +  ++ D  +         
Sbjct: 66  TSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAATEA 125

Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
                         +     E L  +GLR S+     V   Q +  F +   K      V
Sbjct: 126 GDAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMV 185

Query: 236 ELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
            L       +                   F   +D   ++   F+   K  A +AG+   
Sbjct: 186 PLSAKARAAMRTWLAARAGVPAFAESPFLFPAASDSGYLSRQVFARDLKGLAARAGIASA 245

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   A+     GA    +    G   +   + YT   +          R+  +
Sbjct: 246 KVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRL 296

Query: 343 VDSDDP 348
           V+   P
Sbjct: 297 VNDHHP 302


>gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
 gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup]
          Length = 312

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 33/290 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             +I  + +        + ++  +++        +         + +      + S + +
Sbjct: 4   GAVIDHFLEMMSAERGASPHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIALLSLMHT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------- 176
                SS  + L+++R  +++   +   A +P   ++ P++     +  ++         
Sbjct: 64  FGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKLLDL 123

Query: 177 -----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230
                         +    + +L  E L  +GLR S+     VQ ++   +SI    K  
Sbjct: 124 AQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRGKGK 183

Query: 231 TIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               V L     ++L                  F  N++   +     +   K  A +AG
Sbjct: 184 KERMVLLSKKAYQVLLQWLNLRDQGKDVASPYLFPANSETGYIARQVVARELKNLARRAG 243

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +     S H +R   A+     GA    +    G   +   + YT   + 
Sbjct: 244 IESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE 293


>gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 372

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G R ++      T   A  +     +   E         T +K  +  + +     +L 
Sbjct: 16  DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 75

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
            N+  ++       I    G      ++   +++ + +      S        + ++   
Sbjct: 76  YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 135

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             AV    +     +   +  +           +  + ED         EG    +    
Sbjct: 136 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 195

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242
             Y+G+R  + C      +  +                      + + +  T+ +    +
Sbjct: 196 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 255

Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288
            +L      +    +   K  +                +      +  +    ++ + H 
Sbjct: 256 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 315

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 316 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 358


>gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDLKQIDLRNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L       + +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGVLTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 309

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSG 122
           +  L+ EYR+       L+  +   +     + +                 I+   I  G
Sbjct: 6   ISQLLEEYREHLLLERRLSPATVNVYVPVVREYVSFLETRGIGAEEAQADTISGYFIHKG 65

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +  + ++++R   ++ +  +    NP   ++ PK      R    + +   
Sbjct: 66  QAGLGT--RTLARNMSALRSFHRFLLLNDIRNDNPFELLDSPKLPRTLPRTMDYDSVDDI 123

Query: 183 KSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVE 236
                        + R  FE +   GLR S+     ++        ++   K      V 
Sbjct: 124 LHEMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDYSPESRLLRITGKRNKQRIVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGVNKS 285
           + D   +L+    I     FI           N   Q ++       FK    + GV   
Sbjct: 184 VGDVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLSRVMIWKLFKKYCMRIGVEAK 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT    AGA    +    G   +   + YT  
Sbjct: 244 VHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHV 283


>gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG---V 123
           L   +S + +       L+  + ++++   D II  +G+     +++     +R      
Sbjct: 6   LSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAVMVRGFAVRS 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +  
Sbjct: 66  RRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLL 125

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     + R   E +  +GLR S+     ++HL  +        K      + +  
Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGR 185

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +  +      +  F  + +        ++++A      F     K G+  +   H +R
Sbjct: 186 NAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G   +   + YT   D   L 
Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC
           11170]
 gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 330

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 79/268 (29%), Gaps = 27/268 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHTPSSA--- 133
              + ++  ++       +    D+            +     R+ + +R     S    
Sbjct: 46  RRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLTQGLSRPSM 105

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFW 186
            + L+++R LF+W  R+  +      ++  P++     +  ++ +               
Sbjct: 106 ARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALSVASDLQDDP 165

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +    F  L   GLR  ++       L +      T K      V L    ++ LA
Sbjct: 166 WLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGEVMRITGKGRKERLVPLLPVVVEALA 225

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
                       +D        +++N        +      G+    + H +R   AT  
Sbjct: 226 DYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETATPHALRHSFATHL 285

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
              G     +    G  ++   + YTK 
Sbjct: 286 LAQGGDLRTIQELLGHASLSTTQRYTKV 313


>gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 95/350 (27%), Gaps = 20/350 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYM---SALTGSTPKREYINSP 64
                G+ +Y      G R+R         P  +           A   +        S 
Sbjct: 32  RVWPSGRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSD 91

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV 123
            +K  T+      +        L   +R  +    +  I  K G +    ++   +    
Sbjct: 92  DRKAMTVASFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFH 151

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S +H P  A + L  +  +F  A                 + + E    +   D     
Sbjct: 152 GSFRHIPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFLTWDEYARL 211

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVE 236
                    +  +   A   L  +G R  +       H+      ++   +         
Sbjct: 212 GGSLDEAAEDMPEAARAIRLLALTGCRLREIQTLQWAHVWLGEAELRLPDSKTGAKTVQL 271

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                  L A   +    + I   K     T     ++     AG++    H +R   A+
Sbjct: 272 GTAAVDVLKATRRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFAS 331

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVV 343
            + + GA    +    G   +     Y      +  R   + ++RISS +
Sbjct: 332 DALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSAL 381


>gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
 gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665]
          Length = 321

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 39/292 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           L      +         LA N+  ++        + +  +G      +   H+   V++ 
Sbjct: 11  LAAPFRRHLDHLAVERGLAENTLAAYRRDLARYRRWLEAAGVRAPGDVDPGHVAGFVQAL 70

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                        SA + L ++R L ++   +     +P   V  PK  T   R    E 
Sbjct: 71  ATGDDGGRPLAVRSAARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQ 130

Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230
           +             G + R   EFL  +G R S+     V  +     +           
Sbjct: 131 VSALLDAVPTDTPAGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVVRL 190

Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWF 273
                    V +       L    +      +            N    +++        
Sbjct: 191 FGKGSKERVVPIGSYAAAALDAWLVRGRPTIMAGAARSTPALFVNACGGRLSRQSAWAVL 250

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  A +AG+  + S H +R   AT     GA    +    G  +V   + YT
Sbjct: 251 KRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYT 302


>gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601]
 gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601]
          Length = 308

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +  +A      + N+  ++ +   + I           G     ++TT  +R+ 
Sbjct: 10  RDALESWLTAARALKGNSENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAF 69

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +       +  + L++++  ++W    E       +    PK + +  RP      
Sbjct: 70  LAHLRGQGVGSRTMARKLSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAA 129

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + ++   +    G++       L   GLR S++     + L          K G  
Sbjct: 130 KAMIDTVEMQAADSWIGARDAAVVTLLYGCGLRISEALGLRGRDLPLGESLRIVGKGGKE 189

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + L             +            N        +A   + G+  +
Sbjct: 190 RIVPVLPIARRALDTYLRLCPYDPEPDAPVFRGKRGGALNPRLIQKVTEAARLQLGLPAT 249

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT   D + L 
Sbjct: 250 ATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-SVDEVHLM 297


>gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 331

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 92/296 (31%), Gaps = 32/296 (10%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                +   +P T+   +  Y  +      +  +  ++    DQ             T +
Sbjct: 9   EGRGPATPARPETVAAFLD-YLAAQ--KGYSPATLAAYGVDLDQFEEFLRGRGISLATPE 65

Query: 118 HIRSGV--------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +              R+   +S  + L+++R  F++ +R++ VA +P   ++ PK    
Sbjct: 66  KVAREHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKR 125

Query: 170 GIRPW---------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             +           +            E  +     E L  SGLR +++    +  +   
Sbjct: 126 QPKALNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIA 185

Query: 221 IFSIKTQKT----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               +                           +        ++ FF+ +   ++N  Q +
Sbjct: 186 QGVARVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAA 245

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               A A +AG+  +   H +R   AT   ++GA    +    G   +   + YT 
Sbjct: 246 RIVDALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH 301


>gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202]
 gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60]
          Length = 303

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127
           ++ + +       L+  +  ++              G  D+  + T  +R   +    + 
Sbjct: 12  VAAFLQMMRVERQLSPRTVETYRRQLAASAALLLEGGLCDWAALDTTRVRSLVARSRRQG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R    W V +  +  NP   V  P++     +    +D+ +      
Sbjct: 72  LEPASLALRLSALRSFLDWQVSRGALTANPAKGVAAPRQGRHLPKNLDVDDVNRLLDIDE 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
             +   + R   E +   GLR S+      +H+           K      + +    ++
Sbjct: 132 GDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHVDLTTGEVWVLGKGSKERRLPVGREAVR 191

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  F++    +++       F     K GV  +   H +R   A
Sbjct: 192 WLQTWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 288


>gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
 gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238]
          Length = 301

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK 127
           ++          A N+  ++++     +           G     +IT   +R+ + S +
Sbjct: 7   DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A    + L++++  ++W   +E       LS   PK + +  RP   +  +    
Sbjct: 67  GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126

Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                       ++       L   GLR S++       +          K G    V +
Sbjct: 127 TVELQAREPWIAARDVAVVTLLYGCGLRISEALGLTPTDVPLPATLRIIGKGGKERLVPV 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AHG 288
                  +             +           +          +   + G+  +   H 
Sbjct: 187 IPAARAAVNAYLDACPHQLTADQPIFRGSRGGPLYPKAIQNVMASSRMQLGLPATATPHA 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   +AG     +    G  ++   ++YT   D  RL 
Sbjct: 247 MRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYT-AVDTARLM 289


>gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS]
 gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS]
 gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS]
 gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS]
          Length = 318

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 98/298 (32%), Gaps = 37/298 (12%)

Query: 63  SPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTK 117
           +P     + L   +  Y         +A N+  S+     +        G  D  K+T  
Sbjct: 2   APSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTES 61

Query: 118 HIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            +   + + +           +  SA + L ++R L ++A  +    ++   +V+ P   
Sbjct: 62  DVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPG 121

Query: 168 TEGIRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               +  + +++           ++      + R   E L  +G R S++    +  +  
Sbjct: 122 RRLPKSLSIDEVLALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDT 181

Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267
           +  S+    K G    V +    +  L    +                F+N    +++  
Sbjct: 182 HARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQ 241

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 242 SAWQVLQDAAERAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299


>gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
 gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301]
          Length = 313

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 93/293 (31%), Gaps = 37/293 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    + +         +  +    H+RS +++     
Sbjct: 8   AIENFLEMMSAERGAARNTLESYRRDLEAVAEAMAARGVNLAEAGADHVRSAIDAMAAEG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + L+++R  F++   + Y   +P  +V+ PK++    +  + E++ +      
Sbjct: 68  FAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLLDRAV 127

Query: 188 EGSQP-----------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKT 229
             +                       E L  +GLR S+     V   + +   +    K 
Sbjct: 128 LEADEPGGPADLTSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 187

Query: 230 GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                V L     + L                   F   ++   +    F+   K  A +
Sbjct: 188 SKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAAR 247

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AG++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 AGLSASAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 300


>gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA]
          Length = 331

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
            +   L   +     + + +V++   ++ +   ++   G    ++I  + +   +     
Sbjct: 51  ISFPEL-DIFIGKIRFENYSVSTVNQYQRFLTDLLIYVG-KPVQEIAGEDVVECLNYYEQ 108

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +RK + S+           F +   + Y++ NP  +V+  K   E     T  ++++ + 
Sbjct: 109 ARKISSSTKDHKRRIASSFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVEKLRI 168

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 +     E  L SG R S+     V+ +           K      V   D  M+
Sbjct: 169 ACGTNIRDNAVLELFLASGCRVSEVVSMRVEDMDLQAGCGKVLGKGKKERMVFFNDRAME 228

Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
            L      +             Q +         +  A KAG+ K    H +R   AT +
Sbjct: 229 YLERYLGDRRSGAVILSKRAPYQGLKKNALENIIRKIAKKAGLGKRVFPHLLRHTFATRA 288

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + G     L    G  +V+    Y K
Sbjct: 289 LNKGMPLPTLCDLMGHSSVETTRIYAK 315


>gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1
           str. Okra]
 gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 326

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122
           Y ++      + N+  S++       R                D + + I+ + I++   
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAEFNDIEIKDISDEDIKNISL 80

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + +++  F++   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N+I ++  +  
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           AG++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F
           str. Langeland]
 gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065]
          Length = 326

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122
           Y ++      + N+  S++       R                D + + I+ + I++   
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + +++  F++   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N+I ++  +  
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           AG++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
 gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01]
          Length = 313

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 101/301 (33%), Gaps = 22/301 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   +     + + G  D+ ++    +R   
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R   AT   ++      +    G + +   + YT   D   L     +        +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRARKRN 308

Query: 347 D 347
           D
Sbjct: 309 D 309


>gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
 gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122]
          Length = 315

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 24/284 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138
              +  +  S+ +  +  +      G    R +T   + S V        +A    + ++
Sbjct: 32  KGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLSGRGYAAASIERHVS 91

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           +++    + VR   VA +P  ++  P          + + +             G +   
Sbjct: 92  ALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLDQEFREGPLGVRNAC 151

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGFMK 243
           A E L   GLR S+           +   ++    G+              +       +
Sbjct: 152 ALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGGSAARCLASYLEDAR 211

Query: 244 -LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            LL           +N    +++        +      G+ +   H +R   AT   + G
Sbjct: 212 PLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGIKDLHPHTLRHSFATHLLEGG 271

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           A    +    G   +   + YT   DR  +  +          +
Sbjct: 272 ADLRAIQEMLGHSDISTTQIYTH-VDRTHVREEYLSAHPRAKAA 314


>gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51]
 gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 298

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 22/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIRSGV 123
              +S +       + + ++ +++     Q         G+        ++    +RS +
Sbjct: 4   DHALSLFDGHLKTQNRSQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFL 63

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----K 176
                      S  + L+++R  FK+  R+  +  NP   +  PK   +     +     
Sbjct: 64  GEMTERGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELD 123

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231
             ++        G++ ++  E L  SGLR S+      + +      ++      ++   
Sbjct: 124 RLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIV 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            +T    +   + L M    +E   +N    +++           A +AG+  +   H +
Sbjct: 184 PLTHYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHML 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   D GA    +    G   +   + YT      
Sbjct: 244 RHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER 283


>gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy]
 gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy]
          Length = 297

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 88/278 (31%), Gaps = 20/278 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY------RKITTKHIRSGVESR 126
           LI+ +  +     SL+ ++  ++E    Q+               R+     +R  V+  
Sbjct: 6   LIATFLTTQKSIRSLSEHTLCAYERDLLQLQSYFTSLQVPLLEASREDARMFVRYLVKDS 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
            +  SS  + ++  R  +   ++ E +A NP   +   ++        T E++       
Sbjct: 66  SYAQSSINRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSLP 125

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 ++    F  L  +G R S+        ++     ++    G             
Sbjct: 126 YADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYVFFTDHCA 185

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L  + +  +    +N     +              F    ++ G     + H +R   A
Sbjct: 186 SLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKPFTPHVLRHTYA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   D GA    +    G +++   + YT    + RL 
Sbjct: 246 THLLDNGADIRLVQELLGHQSISTTQIYTH-VSKERLA 282


>gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
 gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a]
          Length = 333

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +          +     +  L +   +  S                L+ N
Sbjct: 2   ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322


>gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
 gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1]
          Length = 305

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 90/277 (32%), Gaps = 26/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+  +        + + ++  S+ +  ++  +  +  +   + +    I+  ++      
Sbjct: 12  LLDSFLNYLTLERNFSSHTITSYANDLNRYLLFMQHSEKQIKAVVLTDIQHFIQELHEAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + ++++R   K+ +R+  +  N   S+ +PK         + +++ +      
Sbjct: 72  LESRSISRNISAIRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLDAPL 131

Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                     + ++  E L  +G+R S+       +   +    +          V +  
Sbjct: 132 LEKPPGKYFLRDKVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERLVPVGH 191

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNK--SAH 287
             ++ +            N +              +        +  ++ AG+ K  S H
Sbjct: 192 TAIEWIRRYQQELRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVAGLTKKISPH 251

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G  ++   + YT 
Sbjct: 252 TLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTH 288


>gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 375

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 9/258 (3%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y         +V++  ++ ++F++ I      D   +    IR  ++S      S   
Sbjct: 108 ENYLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSY 167

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++  + K+         N    +ERP+R+    +  ++E++       +   + R  
Sbjct: 168 INQAINAI-KFNYEVVCGMPNRFYDMERPRREHRLPQVISREEIFAIIENTN-NIKHRCI 225

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE 253
            E L  SGLR S+     +Q + +    IK +  K        L +  +  L       +
Sbjct: 226 VELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWK 285

Query: 254 TFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                 + Q     +        K  ++KA +NK  S H +R   AT   ++G    ++ 
Sbjct: 286 PEIYLFEGQPGKQYSGASVLKVVKNASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQ 345

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  +    E YT  A
Sbjct: 346 VLLGHGSTKTTEIYTHVA 363


>gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 302

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 28/297 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---- 116
           +++ R++  T    +  + +     +L  N+  ++     Q+     ++D    T     
Sbjct: 6   LSAERQRIDTFLDAL--WLE----KNLGENTLTAYRQDLLQVAAALAEWDLTLTTADDGA 59

Query: 117 -KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              I            S ++ L+S+R  + +A R+ +V+ +P  +++ P+         +
Sbjct: 60  LARILGQRLQSGAALRSVVRLLSSVRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPHVLS 119

Query: 176 KEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +++            G +     E +   GLR S+      + +  +   +     G 
Sbjct: 120 ETEIEALLAAPDCTHPLGLRDAAMLELMYACGLRVSELVNLETRQVDLSADMVVVFGKGR 179

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKA 280
              +              +      I   +             M   +F    +  A  A
Sbjct: 180 KERLVPMGEVAAGRVTQYLQMGRPQILGQRISAALFVTGRGAAMTRQRFWQNIERYARSA 239

Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           G+ ++   H +R   AT   + GA    +    G   +   E YT  A      +  
Sbjct: 240 GITQTVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHA 296


>gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
 gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624]
          Length = 308

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +          + +    +R  +  R    
Sbjct: 10  QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDSKKINLKNVEASDLREYLAQRVEQD 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 70  QLSASSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGNKTRIVPF 189

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L       + +  + D+                Q     K +A +AGV  +  
Sbjct: 190 GKKAKESLLNWLKVYKIWKGHFDQNAFVFISQHGGVLTPRQIEKRVKLQAQRAGVNVDLH 249

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288


>gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
          Length = 291

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++      ++  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
 gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 95/287 (33%), Gaps = 24/287 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRS 121
           +L  ++  Y +       L+ ++  +++ +   +I    +   +        +  +   +
Sbjct: 4   SLSSVLHTYLEYLRVERQLSAHTLSNYQRHLQALIEWLQEKQIQDWGELNNPLVRQWAHT 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + +  +P +    ++++R    W V +  +A NP   V  PK      +    + + Q
Sbjct: 64  LRKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLDVDQVHQ 123

Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
             +   E      + R   E    +G+R S+     +  L      ++          + 
Sbjct: 124 LLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGNKERILP 183

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286
           +    ++ L      +  F        F+++ K+++ A    I  +    K     +   
Sbjct: 184 VGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQKQTLNSHVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R   AT   ++      +    G   +   + YT   D   L  
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTH-LDFQHLAA 289


>gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           AU 1054]
 gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           HI2424]
 gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054]
 gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424]
          Length = 306

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R       +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ Q + +                        
Sbjct: 126 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L      ++ F  ++           +M+        K  A  AG+    
Sbjct: 186 VPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292


>gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 311

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 93/296 (31%), Gaps = 28/296 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           L     ++        + + N+  ++                D  ++    IRS      
Sbjct: 16  LNETAEKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLA 75

Query: 128 HT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S  + L+S+R  +K  +R + +  NP   +  PK + E  + +   + ++  
Sbjct: 76  KEQDLDRRSQSRKLSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEIL 135

Query: 184 SFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            F +E +      + +   E L  SGLR  +   A +  L  ++       K      V 
Sbjct: 136 EFEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVY 195

Query: 237 LPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                +  L      +   F        N   +K+           +  K G  K  + H
Sbjct: 196 FGKEAVDSLRRYLEYRNVSFPDVKEIFLNQKGKKLTTRGVRYILNERRKKMGWEKKITPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKNSRR 338
             R   AT   DAGA    +    G  ++   + Y   +        R    ++R+
Sbjct: 256 KFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK 311


>gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
          Length = 371

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G R ++      T   A  +     +   E         T +K  +  + +     +L 
Sbjct: 15  DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 74

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
            N+  ++       I    G      ++   +++ + +      S        + ++   
Sbjct: 75  YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             AV    +     +   +  +           +  + ED         EG    +    
Sbjct: 135 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 194

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242
             Y+G+R  + C      +  +                      + + +  T+ +    +
Sbjct: 195 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 254

Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288
            +L      +    +   K  +                +      +  +    ++ + H 
Sbjct: 255 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 314

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 315 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 357


>gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
 gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973]
          Length = 301

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHT 129
           + ++     +    +  +  S++    +          D  +  +    IR  +ES    
Sbjct: 9   VDQFLSYLQYEKRYSPRTVQSYDEDLKEFEAYIKVQGNDLSWHSVDADVIRGWMESMMDK 68

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181
               ++  + L+++R  +++++ +  V+ +P  +V  PK++    +        +   + 
Sbjct: 69  GNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMDELFDKN 128

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240
                 +  + R        SG+R S+     V  +      ++   K      +   + 
Sbjct: 129 RWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVTGKRNKQRVIPFGEE 188

Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + L               +  FI    + M  +Q     K    +      +S H +R
Sbjct: 189 LAEQLVRYLAIREVTAGYDTDALFITEKGRPMTMSQVQYEVKKYLGRVCTLKKRSPHVLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   + GA    +    G +++   E YT  
Sbjct: 249 HTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHT 283


>gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 326

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122
           Y ++      + N+  S++       R                D + + I+ + I++   
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + +++  F++   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N+I ++  +  
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 201 -KERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           AG++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO]
 gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO]
          Length = 375

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G R ++      T   A  +     +   E         T +K  +  + +     +L 
Sbjct: 19  DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 78

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
            N+  ++       I    G      ++   +++ + +      S        + ++   
Sbjct: 79  YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 138

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             AV    +     +   +  +           +  + ED         EG    +    
Sbjct: 139 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 198

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242
             Y+G+R  + C      +  +                      + + +  T+ +    +
Sbjct: 199 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 258

Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288
            +L      +    +   K  +                +      +  +    ++ + H 
Sbjct: 259 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 318

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 319 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 361


>gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 362

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 105/345 (30%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +GK  Y    Y     G++  +      T   A  S +       E       
Sbjct: 3   IESYKKSNGKTYYKFLLYIGIVDGKKKYIRRSGFETKAKAKASLINLQAELSEPQ----- 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L +++ K             +  +  + I+ K  +     IT   I+   E  
Sbjct: 58  TNMTFGKLTNQWLKEYEKTVQGSTYLKTERNINNHILPKLSNVKIGDITPLLIQQLTEQW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181
            +      + L  +R +   A+R  Y+  NP L +  PK K E  +        +  +  
Sbjct: 118 CYDLKYGAKILGIVRNILNLAIRYGYLNSNPALPITPPKIKRERKKNNNFYSLDELKIFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L NN                   T+
Sbjct: 178 KLVDETDDIEKIALFRLLAFTGIRKGELLALTWDDLNNNTLTINKAVTRTFTGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN- 283
              +   + L D  +++L        T  +    +    M  +    W     +   +  
Sbjct: 238 TKSSDRLISLDDETVEILNELHETFPTSTLMFQSESGGIMTPSLPRKWLLQLTSDTKLPP 297

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
 gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970]
          Length = 334

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 35  FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V++  +  +P   +  PK+     +   +E + 
Sbjct: 95  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLN 154

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 214

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L     + L      ++T          +           K  A  A     G + S 
Sbjct: 215 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 275 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321


>gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 337

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 42/309 (13%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESR 126
             I+ +  +       A N+ +++      +    G  +  +   T   I S     ++ 
Sbjct: 17  QWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNRAFGSATRDDIESYLIACDAE 76

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++  + L++++ ++++A  + + + NP + ++ P R+    +     ++ +     
Sbjct: 77  GLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIEVDRLLDAA 136

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
            +  +            E L  +G+R S+     V   + +    +   K G    V L 
Sbjct: 137 RQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKGGKERMVPLS 196

Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 LA                     +  F        +   +F +  K  A   G+
Sbjct: 197 PPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLIKEFAVAGGL 256

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                S H +R   AT     GA    + A  G   +   E YT   D          R+
Sbjct: 257 PPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLD---------ARL 307

Query: 340 SSVVDSDDP 348
           S +V    P
Sbjct: 308 SELVLEHHP 316


>gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
 gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 75  ISEYRKSAH-----WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSG 122
              Y K          SL+ NS  ++    +++         D    ++  +H+      
Sbjct: 2   WQSYIKHFKNYLRLERSLSGNSVEAYVRDVEKLEEYLELSKADLAPARVQEEHLSAFLKY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        S  + L+ ++  FK+ + +  +  +P   +E P+   +     + E+++  
Sbjct: 62  IAELGLAAHSQARMLSGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSYEEIETM 121

Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTII 233
                    EG++ R   E L  SGLR S+     + +   +I  ++      +     I
Sbjct: 122 LSAIDHSTPEGTRNRAIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRILGKGDKMRLVPI 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK-- 284
             E        L            + D   +N            +  K  A KAG++K  
Sbjct: 182 GREAIKYTQIYLDHIRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKDTAEKAGIHKNV 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H  R   AT   + GA+   +    G +++   E YT 
Sbjct: 242 SPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTH 281


>gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 334

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 45/301 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------------------YRKITT 116
           Y ++      +  +   +E+      R                              IT 
Sbjct: 18  YMETI--KGKSPGTVREYENDLRTFFRFIKQMRGSVPRDTPFDEIAIDDVDIPFLASITL 75

Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGI 171
             I          RK+  +S  + ++S+R  +K+   +  +   NP   +E PK+K    
Sbjct: 76  ADIYEYLNYITNERKNRAASRARKVSSLRSFYKYLCERAGILQENPTRDLEAPKQKKSLP 135

Query: 172 RPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +  T E+  +          ++        L  G+R S+     +  ++N+  +  T K 
Sbjct: 136 KYLTLEESMEVLRDIDGKFAARDYCIMTLFLNCGMRLSELVGLNLSDIRNSTMT-VTGKG 194

Query: 230 GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               T+ L +  ++ L              ++  F++N  Q+++             +AG
Sbjct: 195 NKQRTIYLNEACLQALERYLAVRAKDSVKDRDALFLSNRLQRISPKTVQAIVYKYLERAG 254

Query: 282 V---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +     S H +R  +AT+    G      L    G + +   E YT  +DR         
Sbjct: 255 LSGRGLSVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQ--LQDAVN 312

Query: 338 R 338
           R
Sbjct: 313 R 313


>gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 95/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++       +  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19]
 gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11]
 gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18]
 gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2]
 gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
 gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291]
 gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19]
 gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11]
 gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18]
 gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 19/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+  S+    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            S  + L++ + L+ W  R+   A NP   ++ PK         T++ + +  +      
Sbjct: 65  GSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T     G     +    G   ++  + YT  A+  
Sbjct: 245 THLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVR 279


>gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
 gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 96/304 (31%), Gaps = 36/304 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR--- 126
           + L+S + K     + + ++  +++                   I    +R  + +R   
Sbjct: 12  EKLLSMWLKERIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEK 71

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + + SS  + LTS+R   KWA + +Y+  NP    +  ++          E + Q    
Sbjct: 72  DQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQ 131

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        + +   E L  SGLR ++     ++ +  N   ++          V 
Sbjct: 132 APPDKPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVP 191

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                   L         +          FI+    ++   Q     K +A +AGV  + 
Sbjct: 192 FGQKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDL 251

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   A+    A      +    G   +   + YT           +  +++ V D
Sbjct: 252 HPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHV---------DFDQLARVYD 302

Query: 345 SDDP 348
              P
Sbjct: 303 QTHP 306


>gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
 gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 86/288 (29%), Gaps = 23/288 (7%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS 121
                +      Y +      +L+V++   +     ++ R   +        +    +  
Sbjct: 2   AAELDIDRACDLYFQHLKVERNLSVHTIEGYSRDLARLRRFLAERACIAVASVRPADLAD 61

Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            + +        S  +   ++R  F++ V + Y+  +P   +  P+          ++ +
Sbjct: 62  YLLALADELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGEQAV 121

Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +  +        G +     E L  +GLR S+     +  +  +   ++    G    +
Sbjct: 122 TELLAAPPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRL 181

Query: 236 ELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                                      +   F+    + M    F    K  A   G+  
Sbjct: 182 VPLGEMACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIAE 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            S H +R   AT   + GA    + A  G   +   + YT    R RL
Sbjct: 242 ISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTH-VSRARL 288


>gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
 gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 32/291 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESR 126
           L  +  +Y          A  +  S+ +   Q ++        +   I   H++  +E  
Sbjct: 3   LTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYL 62

Query: 127 KH--------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +               + +S    +TS+ V  ++        +NP  ++   K       
Sbjct: 63  RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122

Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  +D+++    + +       +   E L   GLR S+ C   +Q +      ++    
Sbjct: 123 YFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGK 182

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKA 280
                 V +     K L                                 +  K +    
Sbjct: 183 GNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLAL 242

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G++   SAH  R   A+   D GA    +    G   +   + YT   ++ 
Sbjct: 243 GLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKR 293


>gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591]
          Length = 302

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
              + +       L+  ++ S+      II      G  +++ +    +R+ V   K   
Sbjct: 11  AEAFLRYLRVERQLSPLTQRSYAHQLQVIIEMLSSSGIAEWQALDAAGVRAVVARSKRDG 70

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  Q L+++R L  W V +  +  NP   V  PK      +    ++M +      
Sbjct: 71  LNAASLAQRLSALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLLEIDL 130

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR ++       H+   +       K      + +    + 
Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKERRLPVGATAVT 190

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      +E +   +D        ++++       F     K GV  + + H +R   A
Sbjct: 191 WLTHWLAIREIYAPEDDAVFISSLGKRISMRNVQKRFAEWGVKQGVNSHVNPHKLRHSFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS]
 gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS]
          Length = 318

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 98/298 (32%), Gaps = 37/298 (12%)

Query: 63  SPRKKPTT-LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTK 117
           +P     + L   +  Y         +A N+  S+     +        G  D  K+T  
Sbjct: 2   APSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTES 61

Query: 118 HIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            +   + + +           +  SA + L ++R L ++A  +    ++   +V+ P   
Sbjct: 62  DVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPG 121

Query: 168 TEGIRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               +  + +++           ++      + R   E L  +G R S++    +  +  
Sbjct: 122 RRLPKSLSIDEVLALLDGAGGDSEADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDT 181

Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNAT 267
           +  S+    K G    V +    +  L    +                F+N    +++  
Sbjct: 182 HARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQ 241

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 242 SAWQVLQDAADRAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299


>gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 99/298 (33%), Gaps = 27/298 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127
            L   Y  +      +  +  ++ +  +      G          ++T   I + +    
Sbjct: 13  ALFLLYLDAQ--RGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLH 70

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181
                 SS  + L+++R  +++  +++ V  +PC ++  PK      +    +       
Sbjct: 71  RRGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVE 130

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
              +   EG +     E L  SGLR S++      H+  +   ++   K      V L  
Sbjct: 131 TEITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTG 190

Query: 240 GFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNKS--AHG 288
              + LA     +  F     +Q         +++  Q     K  A ++G   S   H 
Sbjct: 191 PAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHT 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345
           +R   A+    AGA    +    G   +   + YT     ++      +  +++  D 
Sbjct: 251 LRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAKKDE 308


>gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC
           BAA-1116]
 gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC
 gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116]
          Length = 313

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 100/301 (33%), Gaps = 22/301 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   +     + + G  D+ ++    +R   
Sbjct: 10  PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEVN 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +Q     ++          V 
Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R   AT   ++      +    G + +   + YT   D   L     +        +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRARKRN 308

Query: 347 D 347
           D
Sbjct: 309 D 309


>gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586]
 gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586]
          Length = 310

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 94/286 (32%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   + + R     G   + ++    +R  V
Sbjct: 10  PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQVGLTSWPQLDAAWVRQLV 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  SGLR ++     V+ +      I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +     +++          +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294


>gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
 gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG
           20546]
          Length = 308

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 94/280 (33%), Gaps = 22/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           +  + +       L+++++ +++   +     +   G  +++++    +R          
Sbjct: 16  LERFYEYLRSEKGLSLHTQRNYKQQLETMAHHLVHLGLKEWQQVDAGWVRQIASKGMRDG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  +A NP   V  P++K    +    +++ Q      
Sbjct: 76  MKASSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNE 135

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +  +   ++          V       +
Sbjct: 136 DDPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGKGDKERKVPFAGMATE 195

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +              +   F++    +++             K  V  + S H +R   
Sbjct: 196 WVTKWLKVRSSLAKSDETALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSF 255

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   ++      +    G + +   + YT   D   L  
Sbjct: 256 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294


>gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 315

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 100/306 (32%), Gaps = 24/306 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHI 119
            P+    + +  I +         S A+N+++ +    ++ +            + + HI
Sbjct: 2   KPQPSEQSWQKTIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHI 61

Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              ++  +      SS    + ++R LF++   Q  +  NP    E P  ++   +  T 
Sbjct: 62  ELFLDEERKRGLSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTT 121

Query: 177 EDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231
           +++++        +    + +   E L  SGLR S+        +   +       K   
Sbjct: 122 KEIEKLLQAPFPDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNK 181

Query: 232 IITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              V +     + L                +   F+N   Q +  ++        A   G
Sbjct: 182 ERAVPIGKCAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGG 241

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           ++K    H +R   A+   + GA    +    G   +   + YT   +   L   + R  
Sbjct: 242 IDKKVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTH-VNLKHLKEIHRRCH 300

Query: 340 SSVVDS 345
              + +
Sbjct: 301 PRSLPT 306


>gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016]
 gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016]
          Length = 322

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127
           + ++ +       L+++++ +++   + +       G   + ++    +R          
Sbjct: 23  LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 82

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ Q      
Sbjct: 83  MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 142

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +      I+          V      ++
Sbjct: 143 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 202

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +              +   F++    +++             K  V  + + H +R   
Sbjct: 203 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 262

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   ++      +    G + +   + YT   D   L  
Sbjct: 263 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 301


>gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L  N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKTGTIITV 235
             G + +   E +  +GLR S++      ++  +              +      +   V
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           E      + L +     +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 ERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
 gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2]
          Length = 300

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 26/279 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           L  EY +     + +  +   ++    +      +     +T    +           +K
Sbjct: 11  LFIEYLQIE--KNYSQYTIEHYQHDISEFFMFMAEQAIADLTKVAYQDVRIYLTELYDKK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +  S  + ++S+R  FK+ +R+E VA NP   V  PK + +    + + +M Q  +   
Sbjct: 69  MSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNACE 128

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + +   E L  +G+R S+  +  ++ L   + ++    K      V       
Sbjct: 129 ASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYVPFGSFAQ 188

Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
             L                 +E  F+N     + A            K+ +      H +
Sbjct: 189 DALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTGKIHPHML 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           R   AT     GA    +    G   +   + YT   + 
Sbjct: 249 RHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNE 287


>gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
 gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 20/279 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH 128
           L+  I ++   A      +  +   + S    +   +  FD +  I  +   +    +  
Sbjct: 4   LEEAIDDFADHALLVKGRSEATVKGYRSDLRTLAEVAPTFDDFTLIALRGWLADAMRQGL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQ 181
             S+  +   + R    WA  + Y+  +    +  P+         T             
Sbjct: 64  ARSTMARRTAAARSFSTWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEIN 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
             S   E ++ R   E +  +G+R ++     V  +       +          V   + 
Sbjct: 124 PDSDGPEAARDRAMLELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGER 183

Query: 241 FMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290
               +      +     +             +++  Q     +  A + G  + S H +R
Sbjct: 184 ATAAIEEWKTRRTELVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTGDTDLSPHALR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +AT   + GA    +    G  ++   + YT  + + 
Sbjct: 244 HSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQR 282


>gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 302

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           LI ++     +  + +  +  ++    DQ  R       G F+  +I +  +RS + S  
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
               +P S  + L+S++  FK+ +++  V+ NP   V  PK K                 
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   EG + RL  E L  +G+R S+        +      +K         +    
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L +                FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + +    G  ++     YT  
Sbjct: 242 LRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHT 278


>gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
 gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23]
          Length = 292

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 26/290 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           I+++     +  + +  +  ++E               +     + T  IR  +ES    
Sbjct: 2   INQFLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKELSISSVDTDLIRDWMESLMDK 61

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
            +SA    + L+++R  +++A++++ V  +P  +V  PK+     +   + +M +     
Sbjct: 62  GNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDGI 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                    + R        +GLR ++      + +  +      T K      V     
Sbjct: 122 EWDSSFNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIVPFGAE 181

Query: 241 FMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVR 290
             + L      +   F          +  Q+++ +Q     K       +   +S H +R
Sbjct: 182 LAEALKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQIVKKYLSMVTSLKKRSPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRR 338
              AT   + GA    + +  G  +V   E YT        R+  +   R
Sbjct: 242 HTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHPR 291


>gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 98/290 (33%), Gaps = 26/290 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126
           I ++ +      + +  +  ++        + + +      +  + +  IR+ +E     
Sbjct: 4   IDKFLEYLRSELNRSQRTVENYREDLKLFEQYARNLSESFTWESVDSDMIRNWMEHMIDA 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
            +  +S  + L+++++ +++A+ + YV  +P  S++ PK      +   + +M     ++
Sbjct: 64  GNKATSVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRK 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 +  + R        +G+R S+     V  +      IK          V   D 
Sbjct: 124 MWGDDYDNVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKITGKGNKQRIVPFGDE 183

Query: 241 FMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVR 290
               L+     +    +         +   +M+  Q     K       +   KS H +R
Sbjct: 184 LKNALSEYLTLRAQRVMVKSGALLLADKGGRMSPVQVREIVKENLARVCSLKKKSPHVLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRR 338
              AT   + GA    L    G   +   E YT        R+ I+   R
Sbjct: 244 HTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHPR 293


>gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 91/273 (33%), Gaps = 24/273 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
            + EY +       L+ ++  S+ +     +  + + +    R++    +   V   +  
Sbjct: 4   YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A   L     +R  F++ VRQ  +  +P   ++ PK + +  +  T E + +  S  
Sbjct: 64  GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
             G+    + +   E L  SG++ S+     +  +   +  ++     G    + +    
Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIA 183

Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            + +A          + +             ++    F    K     AG++   + H +
Sbjct: 184 AESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R   A      GA    +    G   +     Y
Sbjct: 244 RHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY 276


>gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 289

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 84/264 (31%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138
             L+ NS  ++      +     +    +      + +        ++  +P +  + L+
Sbjct: 7   RGLSENSIQNYILDVHALQYFLINEKIEESPTDCSLDSVQKFIYETAKILSPHTQARRLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194
            +R  F + + + Y   NP   +E PK   +     + E+++   +       +G + R 
Sbjct: 67  GLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINLSHPQGQRNRA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             E L  SG+R S+     + +L      I+          V +     + L        
Sbjct: 127 ILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPMGGISKEFLEEYITETR 186

Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                + K K                     K  A KA V K    H  R   AT   + 
Sbjct: 187 KNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFRHSFATHLLEN 246

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G +++   E YT 
Sbjct: 247 GADLRTIQILMGHESITTTEIYTH 270


>gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
 gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056]
          Length = 294

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH 128
           L   +     +  + +  +   + +   ++ +      G+     +  + +R  + S   
Sbjct: 3   LTDSFLDYLLYERNYSKYTVEFYRTDILELQKFGEELLGNLTPSDVDVELVREWIASLMD 62

Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + L+S+R  +K+ +R+  V  +P   + RP++K        + +M +    
Sbjct: 63  RGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQKITRPRKKKPLPVFLRESEMNRLLDD 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKTQKTGT 231
                  EG + R+  E    +G+R S+      + +                +      
Sbjct: 123 IDFGEGFEGCRDRMIVEMFYATGMRLSELVGLDDKDVDFLASLIKVVGKRNKQRLIPFDE 182

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289
            +   + +   +     P+  + FFI  +  ++  +  +   K   +K      +S H +
Sbjct: 183 ELRCSMQEYVNERNKSFPVRSDAFFIRKNGGRITRSIVAYIVKRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLGSIKELLGHESLATTEVYTHA 278


>gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72]
 gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 23/278 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMR 141
            LA N+   + S   Q             +     + + +    R+  P+S  + +++ R
Sbjct: 28  GLAANTIAGYRSDLAQFGAWLASRGTQLIEADESQLTAYLAEFSRRAKPASQRRLMSAWR 87

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197
             ++  + Q  +A +P + ++ P       R  ++  ++   +     +    + R   E
Sbjct: 88  RFYRGLLGQRRIAQDPTVQLDAPVTGERFPRTLSEAQVESLLAAPDVDTIHGLRDRSMLE 147

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------- 248
            L  SGLR S+     +  +      I+          V   D  ++ L           
Sbjct: 148 LLYASGLRVSELVELKLFAISTGEGVIRVFGKGSKERLVPTGDIALEWLGRYLREARPAL 207

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303
                 +  F++     M    F    K  A KAG+     S H +R   AT   + GA 
Sbjct: 208 LRGRTCDEVFVSQRGAGMTRQMFWRIIKQYAPKAGIPAQRISPHTLRHAFATHLINHGAD 267

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              +    G   +   + YT  A R RL   ++R    
Sbjct: 268 LRVVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 304


>gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus
           succinogenes 130Z]
 gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC
 gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z]
          Length = 295

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            + +Y         L+  +  ++      +       G   ++++T   +R  +   +  
Sbjct: 4   ALQKYYDFLRIERRLSPYTLTNYRRQLSAVTELLTQNGIRSWQQVTPSVVRFILAESRKA 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFK 183
                S    L+++R    + V QE + +NP   +  PK+     +   +E +      +
Sbjct: 64  GLHEKSLALRLSALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQIGKLLDNR 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
           S      + R   E +  SGLR S+     + H+      ++   K      + +    +
Sbjct: 124 SNEPIDIRDRAMLELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKGSKERILPVGHQAL 183

Query: 243 KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +      +  F   +          ++         +    K G+  + + H +R   
Sbjct: 184 DAVLDWLQVRLRFNPKDNALFVSSQGGRLTPRAIQKRMEIWGVKQGLSTHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A A    +    G   +   + YT 
Sbjct: 244 ATHMLEASADLRAVQELLGHSNLATTQIYTH 274


>gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
 gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L++ R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           V L    ++ L      ++T       F   +  +++  Q     ++ A + G   + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
 gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria
           meningitidis alpha14]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L+ N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++       +  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++               I+      +    + 
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK      +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +            +  F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
 gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567]
          Length = 339

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 87/290 (30%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-- 129
              Y +   +   +  +  S+ S         G         I  + IR  + S      
Sbjct: 44  FERYLRYEKYR--SEETIRSYISDLYGFFGFIGRRGISRVEDINLQLIREWLGSMHLKQN 101

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------- 179
             ++  +  +++R  F WA  +E +  NP   +  PKR        ++E M         
Sbjct: 102 AKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVAL 161

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
             +         +     E L  SG+R S+     +  +     +++          V L
Sbjct: 162 RCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPL 221

Query: 238 PDGFMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNK- 284
               MK+L+        ++I                ++ N  Q               + 
Sbjct: 222 GTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEV 281

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             AH +R  +AT   D GA    +    G  ++   + YT      RL  
Sbjct: 282 SGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLAD 330


>gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 379

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 97/279 (34%), Gaps = 21/279 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             Y    +    A ++  S+ + F++ I         ++  + I+  +++    K++ SS
Sbjct: 109 ENYLNELNQRRYACSTVKSYIACFERFINYYSKKKMTELGEEEIKKFIQNLIDKKYSDSS 168

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + +++  ++   +      +       P+++       +KE++ Q         + 
Sbjct: 169 VNMHINAIKFYYEVVEKMPNRFYDFAR----PQKEERLPEVLSKEEILQ-MIANCHNLKH 223

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +     L  +GLR S+     +  +        I+  K        L +  +  L     
Sbjct: 224 KCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISILGNTILDDLRAYFK 283

Query: 251 GKETFFINN---DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                         Q+ ++T  S   K  A +AG+ K  + H +R   AT   +AG    
Sbjct: 284 SYRPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVTPHMLRHSFATHLLEAGTDLR 343

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            + +  G    +  E YT         +   ++I + +D
Sbjct: 344 YIQSLLGHNNSNTTEIYTHV------AVNAFKKIRNPLD 376


>gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
 gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2]
          Length = 313

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 94/278 (33%), Gaps = 25/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIR---SG 122
             ++  +          +  +  S+ +  +Q                ++T  H+R   + 
Sbjct: 11  GEMLRGFLAHLAVEKGYSEATIRSYGTDLEQFDGFLKRSKRSLEHPERVTRDHVRSFLAE 70

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +   +   ++  + L+S+R  F++ +R   +  +P  ++  PK++    +    +     
Sbjct: 71  MHRLRLGKATMGRKLSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAM 130

Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                    EG +     E L  SGLR S++    +  + +++  +  + +         
Sbjct: 131 MEAMIEPDPEGLRDLALAEVLYGSGLRISEAVGLDLNDVDSDVIRVTGKGSKERIVPLSD 190

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                     +    L+      +  F      +++N  Q +         AG+ K    
Sbjct: 191 AAVKRIRRYMEQRHALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGLPKDVHP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   +AGA    +    G + +   + YT 
Sbjct: 251 HMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTH 288


>gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 341

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 137/332 (41%), Gaps = 18/332 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P V + R R G +  Y R+      R     +  F+ A+++       +R      R + 
Sbjct: 3   PRVHRVR-RGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAE-----EQRAPTVRSRSQA 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+      Y  S  +  L+   R     + ++I  +      + +  +HIR+ +E    
Sbjct: 57  GTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEPL-- 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS 187
           +P  A   L + R L ++ + +  +  +P   V+R K     G   WT ED++ F++ W 
Sbjct: 115 SPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWP 174

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIITVELPD 239
            G+  RLA E   ++G RC D  R G Q +                     T     L +
Sbjct: 175 IGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEE 234

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
               L+   P+G   + +    +       S WF A A +AG+  ++AHG+RK+     A
Sbjct: 235 QRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALA 294

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + GA+   + +  G  T+ + + YT+ ADR R
Sbjct: 295 EHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 326


>gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 306

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV 123
           PT+L   +  + +       L+++++ +++     I  +  +     ++++    +R   
Sbjct: 7   PTSLSRPLERFYEYLRSERELSLHTQQNYKRQLSTIAEQLVEMQVTSWQQLDAGWVRQIA 66

Query: 124 ESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +   A      L+++R    + V Q  +  NP   V  PK+     +    ++M 
Sbjct: 67  SKGMRSGLKASSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKNLDVDEMD 126

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q  S   +     + R   E +  +GLR S+     ++ +Q     ++          V 
Sbjct: 127 QLLSVEGDDPLSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDLRVIGKGDKERIVP 186

Query: 237 LPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +              +   F++    +++        +    K  V  + + 
Sbjct: 187 FSGLAKEWVGNWLKVRATLAHSDEPALFVSKRGMRISNRNVQKRMEEWGQKQAVSSHINP 246

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 291


>gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
 gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1]
          Length = 313

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 96/295 (32%), Gaps = 22/295 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127
           +  + +       L+++++ ++    + +   + + G   + ++    +R          
Sbjct: 14  LERFYEYLRSEKGLSLHTQRNYRQQLETMGMHLHEMGIGAWTQVDAGWVRQLAGKGMREG 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  +  NP   V  P+++    +    +++ Q      
Sbjct: 74  MKASSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPKNLDVDEVNQLLEVDE 133

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+HL  +   ++          V       +
Sbjct: 134 DDPLAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGELRVIGKGNKERKVPFSGYATE 193

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                          G+   F++    +++             K  +  + S H +R   
Sbjct: 194 WAKKWLKVRGELAKPGEVALFVSKLGTRISHRSVQKRMAEWGQKQSLASHVSPHKLRHSF 253

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   ++      +    G + +   + YT   D   L     +       +  P
Sbjct: 254 ATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAQAYDQAHPRAHKNGTP 307


>gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
 gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394]
          Length = 289

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 94/274 (34%), Gaps = 19/274 (6%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131
           I  + +       LA N+  ++     ++  +      D++    + +   V +    PS
Sbjct: 4   IDRFLEHLWLQERLAHNTLEAYRHDLHKVAERLAAAQTDWQHADNRQLADAVYAADEQPS 63

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           +  + L++++  +++    ++   NP   ++  K      +P ++  +    +       
Sbjct: 64  TQSRTLSAVKKWYQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAAPDTDTL 123

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            G + +   E +  +GLR S++ +  +  L           K      V L +     L 
Sbjct: 124 HGLRDKALLELMYATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIVPLGEVAADWLE 183

Query: 247 MTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                              F++  K  ++           A + G+   S HG+R   AT
Sbjct: 184 RYLHTARPELLKGQACAYVFVSQKKVGISRQLAWQVVAKYAQQVGLPALSPHGLRHAFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + GA    +    G +++   E YT  A+  
Sbjct: 244 HLVNHGADLRVVQLLLGHESLTTTEIYTHVANAR 277


>gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4]
 gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4]
          Length = 313

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P +L+  +  + +       L+++++ +++   + + +     G  D+ ++    +R   
Sbjct: 10  PNSLQKPLQRFYEFLRSEKGLSLHTQRNYKQQLETMAQHLVEMGLKDWSQVDASWVRQLA 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  ++ NP   V  P++K    +    +++ 
Sbjct: 70  GKGMREGMKASSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129

Query: 181 QFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q            + R   E +  +GLR ++     ++ +Q     ++          V 
Sbjct: 130 QLLEVNEGDALAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGKGDKERKVP 189

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +       +          +++             K  V  + S 
Sbjct: 190 FSGMATEWVGKWLRVRGDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQKQSVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 294


>gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
 gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 38/286 (13%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------S 125
           Y         L+ ++  ++E    + +R     G    + ++   +   +E        +
Sbjct: 8   YLAHLRVERGLSPHTLSAYERDLGRYLRYLRSAGISAPQDVSRNDVAGFLEVLRTGSDGA 67

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R    SSA + +T++R   K+ + +   + +P  +V  P+      +    +++ +    
Sbjct: 68  RPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVCRLLEA 127

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + R   E L  +G R S++    V  L  +   ++   K      V +  
Sbjct: 128 AGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGKGRKERVVPMGA 187

Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282
              + L                G    F+N   + ++        +  A +AG+      
Sbjct: 188 YAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGA 247

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                S H +R   AT     GA    +    G  +V   + YTK 
Sbjct: 248 DERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 293


>gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 100/279 (35%), Gaps = 24/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD-YRKITTKHIRSGVES 125
           L +   E+         ++  +  ++ S F Q +      G       +TT  IR  +  
Sbjct: 3   LDYYFDEFIDYLKAEKDVSHYTVDNYTSDFKQFLNFLRVNGIQPKLNTVTTPIIRRYLAH 62

Query: 126 RK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            K    +   +  + +  +   +K+ + QEY+  NP  ++  PK      +  + E++Q 
Sbjct: 63  LKTDKNYAVETIRRRVHCLSSYYKFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQL 122

Query: 182 FKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT 234
             +   + S     +    FE  L +G+R  +        +     I +++  K      
Sbjct: 123 LLTMPQKYSPDSVLRNLCIFECFLMTGMRRQELLDLNWDDIDFGEKIITVRNGKGKKQRV 182

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK---SA 286
           + + +  +  L      +     +         +++AT     F+    K+G++K   + 
Sbjct: 183 IPMTEPLISDLWKYLQTRLPLTNHALFISAKGNRLSATPLEQTFRLYMRKSGLDKKGYTI 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   A+  A  GA+   +    G   ++  + Y   
Sbjct: 243 HTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHV 281


>gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 299

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++               I+      +    + 
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +            +  F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
 gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931]
          Length = 356

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 88/298 (29%), Gaps = 34/298 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-- 129
              Y +   +   +  +  S+ S         G         +  + IR  + S      
Sbjct: 61  FERYLRYEKYR--SEETIRSYISDLCGFFGFIGRRGISRVEDVNLQLIREWLGSMHLKQN 118

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------- 179
             ++  +  +++R  F WA  +E +  NP   +  PKR        ++E M         
Sbjct: 119 AKTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVAL 178

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
             +         +     E L  SG+R S+     +  +     +++          V L
Sbjct: 179 RCRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPL 238

Query: 238 PDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKA-GVNK 284
               MK+L+        ++I                ++ N  Q                 
Sbjct: 239 GTPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEV 298

Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           S AH +R  +AT   D GA    +    G  ++   + YT      RL     R    
Sbjct: 299 SGAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYIRAHPR 355


>gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98]
          Length = 299

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 95/287 (33%), Gaps = 27/287 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           +K L+  +        + +  +  S+++  +  ++     G   +  +T   +R  + + 
Sbjct: 3   VKKLLQLFVGYLQIERNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTL 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                   S  + ++S+R L+++ +R+ Y   NP      PK++    +    E+     
Sbjct: 63  HDEKLARKSVARKVSSLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLF 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
           +   +    G + +   E +  +G+R S+     +  +  ++ +I    K      +   
Sbjct: 123 EVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIPFG 182

Query: 239 DGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L                   +  F+N     +              K  +    
Sbjct: 183 SYAQDALITYIENGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTMRI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   D G+    +    G + +   + YT    + RL
Sbjct: 243 SPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTH-VSKERL 288


>gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
 gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563]
          Length = 310

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 24/288 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129
            ++S Y         L+ N+  S++      +           K T K I   +  RK  
Sbjct: 10  EILSMYLNYEAVEKGLSSNTLESYKRDIVIYLDFLTRNKKTILKATRKDIEKFLSERKEQ 69

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  +   S+  L+K+ V + Y++ NP  ++E  + K       T  ++    S  
Sbjct: 70  GSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVH 129

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
           +E    G + +  FE +  SGLR S+ C   +  +      +K +        V + D  
Sbjct: 130 NEKTDKGLRDKAIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERIVPINDRA 189

Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           + +L           +          N    K++        K    K+ + K+   H +
Sbjct: 190 LDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITKNVYPHTL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R   AT     GA    +    G   +   E YT   D   L  + ++
Sbjct: 250 RHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTH-VDSSHLKKQIAK 296


>gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
 gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2]
          Length = 311

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 23/287 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             LI E+  +      L+ N++ ++ S                 +++ + +   +  R  
Sbjct: 19  ARLIDEFINALWLEEGLSKNTQSAYRSDLRLAALDWQRAGLRLNEVSAEDLPRLLGERMS 78

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  SA    +  +S++  F W  +Q     +P  ++  P+         ++ ++++  + 
Sbjct: 79  SGQSARSIARLRSSLKRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEVERLLAA 138

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E L  SGLR ++        +      ++          V + D 
Sbjct: 139 PDVSEPIGLRDRAMLELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLVPIGDE 198

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
            +  L+                   F+      M    F    K  A  AG+ +  S H 
Sbjct: 199 AIVWLSRYLREARSGLLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARLPSPHT 258

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +R   AT   + GA    L    G   +   + YT  A      +  
Sbjct: 259 LRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHA 305


>gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           MSMB43]
          Length = 320

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 97/315 (30%), Gaps = 28/315 (8%)

Query: 47  YMSALTGSTPKREYINSPR--KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQII 103
              A +   P  E   SP      T++       + +      L+ N+  ++        
Sbjct: 6   RALAPSADRPADESAASPAWLDSRTSIDLFCDAMWLEH----GLSRNTLDAYRRDLQLFA 61

Query: 104 RKSGDFDYRKITTK---HIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +         +       +   + +R     +S+ + L+  R  + WAVR+   A++P L
Sbjct: 62  QWLAARHAASLDRAERPMLEGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRTAVDPTL 121

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +   K+        ++  ++   +     +    + R   E +  SGLR S+       
Sbjct: 122 RIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTV 181

Query: 216 HLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKM 264
            +  N   ++          V   +     +     G              F+      M
Sbjct: 182 EVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRGARPALLGARAADALFVTARGDGM 241

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              QF    K  A +A V  + S H +R   AT   + GA    +    G   +   + Y
Sbjct: 242 TRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIY 301

Query: 323 TKGADRIRLGIKNSR 337
           T  A      +  + 
Sbjct: 302 THVARERLKMLHAAN 316


>gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel]
 gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel]
          Length = 318

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
            ++++++         ++N+ +S+    D++I              D   +    +R   
Sbjct: 14  DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWF 73

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
            SR        +  + L+++R  F++  R  Y+       + RP  K    +        
Sbjct: 74  ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 133

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                 +         +       L  SG R S+      Q ++ +   I  +     + 
Sbjct: 134 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 193

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284
             L   +  L               + Q +         + T F+   +    + G+   
Sbjct: 194 PILSVVYKSLCQYIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AH  R   AT     GA    +    G  ++   + YT 
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 294


>gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
 gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27]
          Length = 312

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 89/267 (33%), Gaps = 24/267 (8%)

Query: 88  AVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141
           +  +  ++     +     R  G    + IT   +R  V   K      SS  + ++++R
Sbjct: 36  SPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLGLAGSSIRRNISALR 95

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFE 197
             F+  V +  V  +P   ++ P+R        + +++ +  +      +     R   E
Sbjct: 96  TWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLE 155

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF- 255
               +GLR S+     V+ +      ++   K      V +    +  +A+         
Sbjct: 156 LAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAIGAVAVYLRELRPVL 215

Query: 256 ---------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                    F+N     ++        +     AG+ K  S H +R   AT   + GA  
Sbjct: 216 ERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTLRHSFATHLLEGGADL 275

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + YT   DR  L
Sbjct: 276 RAVQEMLGHADIATTQIYTH-VDREYL 301


>gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 19/291 (6%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L      Y +       L+ N+  ++     ++I   G  +   +T   + +  +     
Sbjct: 3   LNEAGEAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLIEVVAVTGDALVTYADHLSKR 62

Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFK 183
               P++  + L   R LF+W  R   ++ +P     +             T E  +  +
Sbjct: 63  RGLAPATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDEMARLAR 122

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235
           +     +  RLA   L  +G+R  +     +  +  +   I+    G             
Sbjct: 123 AADDASATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQRQVVIPNESL 182

Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            +    + +         E F    + + +         +  A  AG+    + H +R  
Sbjct: 183 KDAIREYARTYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAGLVRTVTPHMLRHT 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSV 342
           +AT   +AG     +    G +++   + YT  +D   R  ++ +     +
Sbjct: 243 AATELLEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGADLFGRL 293


>gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 299

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++               I+      +    + 
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +            +  F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 QALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 118/354 (33%), Gaps = 28/354 (7%)

Query: 15  RTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---- 69
             ++G   + F++   G+R+ +       F  +   A+  +   +  I            
Sbjct: 43  VYKNGSRSWRFKQKFRGKRLFITIGPYPLF--SLQEAIDKTRHFKRLIADGIDPRQEQQP 100

Query: 70  ----TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               TL   + +      +      +  + ++    +II+  G      I+ + +    +
Sbjct: 101 QSQLTLAQFVEQ--DFLPYARKHYKTFHNQQNMLDKRIIKTFGATPLADISKREVMLFHQ 158

Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + ++  + L+ +  +FK A+  + +  NPC  +++ K      R   +++  +F
Sbjct: 159 QVCDETSGTTGNRHLSLLSSIFKLALEYDLLEKNPCRGIKKAKENRSRDRFLQEDEYTRF 218

Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
                       A    L    G+R S+      + +   +    ++  K G    V L 
Sbjct: 219 IQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWEDVSLADRHLHLRDTKNGESRYVALN 278

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292
                LL      ++         + ++           F     ++ +     H +R+ 
Sbjct: 279 SVSHGLLTKMKQKRKASNPWVFPSRTSSESGHLQDVRRTFATVCRESKITGLRIHDLRRS 338

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVD 344
            A+   +AG     +    G K++   + Y K A     R     SR+I  V++
Sbjct: 339 HASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATSSLARTSEIASRKIEEVMN 392


>gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
 gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
           P +++  ++ +         L+ ++  ++              G   ++ +    +R   
Sbjct: 4   PASIEKPLARFFDYMIRERGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIA 63

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K       S    L+++R  F + V    +A NP   V  PK+     +    +++ 
Sbjct: 64  AQAKREQLKAGSIALRLSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEVN 123

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q  S  ++     + R   E +  +GLR S+     V+ +      ++          V 
Sbjct: 124 QLLSVDADDPLSVRDRAMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + L      +       +         ++++             K  V  + + 
Sbjct: 184 FTGMAKEWLINWLKVRNQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSSHINP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTH-LDFQHLA 288


>gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38]
 gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38]
          Length = 295

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 100/292 (34%), Gaps = 30/292 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---K 127
               +Y       + +  +  ++                   ++   +IR+ + +     
Sbjct: 6   QAYQDYL--VKEKNYSPLTVRAYLDDIQSFQEYLLGQSISLEEVVYPNIRNWIVTLVEHN 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQF 182
            + +S  + +++++  +K+ ++ + +++NP L  +  K     +     +       +  
Sbjct: 64  ISTTSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELLDVFSENE 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGF 241
            +   EG + R   E    +G+R ++     +  +     +I+   K      + + D  
Sbjct: 124 YADDFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDCT 183

Query: 242 M-------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           +             +L++   +   +   N   +       + +F   + K    KS H 
Sbjct: 184 LNLYKKYKSLRNGLELISDNEMLILSKTGNKVSESFVYRLINDYFSTVSKK--EKKSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
           +R   AT   + GA  + +    G  ++   + YT    A+  ++  +   R
Sbjct: 242 LRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPR 293


>gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 298

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------G 122
            +  I ++         LA N+  ++     ++     +++   +T + +          
Sbjct: 3   WQEAIQDFTYYLKIERGLADNTVQNYRLDILKLANYISEYN-ATLTPELVDEETLQSFIY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             S+     S  + ++ ++  F + + ++Y   NP   +E P+         + +++ Q 
Sbjct: 62  SISKVINERSQARLISGLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEIDQL 121

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL 237
                    +G + +   E L   GLR S+     +  L     F     K      V +
Sbjct: 122 VEAIDLSHLQGHRNKAIIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKGNKERLVPI 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK-- 284
                K +++             + K                     K  A K  + K  
Sbjct: 182 NTYTQKFISIYKEEFRIHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQLAKKINLQKNI 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H  R   AT   + GA    +    G +++   E Y  
Sbjct: 242 SPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMH 281


>gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 304

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 81/269 (30%), Gaps = 24/269 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
              +  +  +++    +        G+   + I+   IR   + +  ++ + +S  + L+
Sbjct: 16  KRYSPLTAQAYQRDLKEFAHFLASSGNDQVQSISYYDIRLFIAFLNEKRLSRTSIARKLS 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPR 193
           ++R  FK+   +  +  NP   V    +K      + +++MQ               + +
Sbjct: 76  TLRSFFKFMQVETKLDQNPMDLVNYQVKKQRLPDFFYEDEMQALLKAAAESEHPLALRNQ 135

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL-------PDGFMKLL 245
              E L  SGLR S+     +  +      ++          V +          ++K L
Sbjct: 136 AILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKERIVPMSDSASQTMQDYIKYL 195

Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300
                            K       Q S             ++   H +R   AT   + 
Sbjct: 196 RPKLDVTGQAKQVFLSNKGKTLTTRQVSQILNEIVAEGALNLSIHPHKLRHTFATHLLNN 255

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           GA    +    G   +   + YT      
Sbjct: 256 GADLRSVQEMLGHADLSSTQIYTHITKDK 284


>gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
 gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma
           proteobacterium HTCC2080]
          Length = 304

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 89/280 (31%), Gaps = 23/280 (8%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV 123
             +L      +         ++ ++   +     + +             +    +R+ V
Sbjct: 2   TDSLAAACDVFLAYQRDIRQVSRHTLEGYGRDIRRFVSFCAVSNKQSATSVRESDVRNWV 61

Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKE 177
                   +P+S  + L+S+R L+++   ++    NP L V+ PKR     +     +  
Sbjct: 62  SQLHRQGLSPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSVN 121

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----I 232
            + Q++   +   +     E L  SGLR S+   A +  L+ N   I     G       
Sbjct: 122 HLFQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLP 181

Query: 233 ITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           +         K L                F++    +++     +  +  A  + +    
Sbjct: 182 VGGPALTAVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKL 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+   ++      +    G   +   + YT 
Sbjct: 242 HPHMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTH 281


>gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
 gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541]
          Length = 311

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  + +       L+  +  ++      + +   +    +         +++ +      
Sbjct: 19  VEAFLRYLRVERRLSPVTITNYRRQLSAVCQILDELKVSQWQQLDIAIGRNVAAKSRRTG 78

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V Q  +  NP  ++  PK K    +    +++ Q  +  S
Sbjct: 79  LQAASMALRLSALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMDVDEVSQLLNMDS 138

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     V+HL  N+       K      + +    + 
Sbjct: 139 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLNSGEVWVMGKGSKERRIPMGKTAVN 198

Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E +              ++++       F+    K GV  + + H +R   
Sbjct: 199 WLKRWLEMRELYDPEDGAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 258

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 259 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 296


>gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900]
          Length = 304

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGSALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|294837791|ref|ZP_06782474.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113]
 gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059]
 gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057]
 gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 304

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR---- 126
            L+S + K     + + ++  ++E      +        D R +    +R  +  R    
Sbjct: 6   QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA + +Y+ INP    +  ++          E + Q     
Sbjct: 66  QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +  N   ++          V  
Sbjct: 126 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKS 285
                + L         +  + D+                Q     K +A +AGV  +  
Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    +      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM
           15897]
          Length = 297

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 87/266 (32%), Gaps = 21/266 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
             L+ N+   +            D+D +K    HI +     K   +  +S  + + S+R
Sbjct: 17  RGLSENTVQGYIRDIKAFYEYI-DYDIKKFDLSHIDAYFCELKDDGYKVTSIRRKIVSLR 75

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFE 197
              ++  R   +        + PK   +  +  +     + ++        G + +    
Sbjct: 76  QYNEFLSRTRGMQDIMTQ-YDLPKTDKKLPKVLSLEEIIKVIKSIDDSNPAGKRNKAMML 134

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIG----- 251
            L+ +G+R S+     +  + +++ ++    K      + L +     +           
Sbjct: 135 LLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLDEETCSYVYSYMQNDRSFF 194

Query: 252 ----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                +  F+ ND ++M    F    +     AGV  + + H +R   AT   +      
Sbjct: 195 NKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPHMLRHTFATTLLENHCDLR 254

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G + +     YT    R  L
Sbjct: 255 SIQVMLGHQDISTTTIYTHVTHRQIL 280


>gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
 gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101]
          Length = 314

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG 122
           +  +  +          A N+  +++      +           G      IT   +RS 
Sbjct: 15  RDAMQTWLDHQRALKGAAENTITAYQGDVTDFLAFMTLHKGDSIGLGALANITISDMRSW 74

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
           +   +     P S  + L++++  ++W   +E       LS   PK   +  RP      
Sbjct: 75  MARTRGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAVDAA 134

Query: 175 --TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + ++         ++       L   GLR S++                  K G  
Sbjct: 135 KAMIDCVELQSPRPWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPDVLRIVGKGGKE 194

Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKS 285
             V +       +            +            + A   +        + G+  +
Sbjct: 195 RVVPVLPAARDAVDAYLRACPHPQEHGTALFKAVRGGPLAARAIAQVMADARMQLGLPAT 254

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              H +R   AT   DAG     +    G  ++   + YT   D  RL  
Sbjct: 255 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 303


>gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
 gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171]
          Length = 322

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 46/299 (15%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           L+ ++         LA  +  ++ES   + +       G  D   I    I   V     
Sbjct: 8   LLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDS 67

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA    + L S+    ++A+ Q  V+ +   +V+ PK         T +++ +    
Sbjct: 68  DGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDA 127

Query: 186 WSEG--------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223
             +                      + R   EF+  +G R S++    +  +  +     
Sbjct: 128 IPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVA 187

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269
             T K      V L +   + L                    +   F+N   ++++    
Sbjct: 188 RLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLSRQSV 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               K    +AG+++    H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 248 WEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 306


>gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           K96243]
 gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1710b]
 gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           1106a]
 gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           14]
 gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           91]
 gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           9]
 gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           B7210]
 gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           112]
 gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
 gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b]
 gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a]
 gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305]
 gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e]
 gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237]
 gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13]
 gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655]
 gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9]
 gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b]
 gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a]
          Length = 310

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I +Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLDSLTAVDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     ++++++  +                        
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296


>gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13]
          Length = 302

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 91/276 (32%), Gaps = 29/276 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTP 130
           EY +     + +  + + ++   +       +     I        +   + +  +K+  
Sbjct: 13  EYLQIE--KNYSKYTIVFYQKDIEDFFDFMKEEAISSINEVTHTEARMYLTRLHQKKYAR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186
            S  +  +S+R  +K+ +R+E V  NP  SV  PK++    +    E++ +  +      
Sbjct: 71  KSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKLFAVSDLET 130

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
             G + +   E L  +G+R S+ C   +  +   + +I  T K      +         +
Sbjct: 131 PLGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRYIPFGSFAQDAI 190

Query: 246 AMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAG--VNKSAHGV 289
            +         +   K                       +       +A   ++ S H +
Sbjct: 191 KIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQACSTLHISPHML 250

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G  ++   + YT  
Sbjct: 251 RHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHV 286


>gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl]
 gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl]
          Length = 286

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 101/282 (35%), Gaps = 26/282 (9%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVES 125
             ++++    A    ++ N+ I++ +  DQ+     +       D    T       ++ 
Sbjct: 3   QYVAQFLAYIADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +++  S+  + L +++  F +   +  +  +P   ++ P+      R  ++  + +    
Sbjct: 63  KRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEV 122

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
                  EG + +   E L  +G+R S+     V  +  +  +++ +       T+ L D
Sbjct: 123 PLQNGTPEGIRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPLSD 182

Query: 240 GFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
             +  L                      F+N+  +++    F +  K  A + G+ + + 
Sbjct: 183 PALTALEEYLDIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDLTP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   A      G    EL    G  ++   + Y   A+ 
Sbjct: 243 HMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEE 284


>gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 16/265 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            LI ++       +L+  +   +    +       +  ++ +T+  + S + S+ +    
Sbjct: 50  ELIKQFVIQKKVQNLSDRTIKYYVLTLELFNSFLRNKPFQTVTSNDVISFLGSKMYKDKV 109

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T ++A     ++   F +    +++  NP   V++     E  + ++  ++ + +  ++ 
Sbjct: 110 TSTTANNLRRNLSSFFTFLQEFDFILKNPMARVKKINEVREKKKAFSATELAKIRKVFT- 168

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
             + R  FE LL+SG+R    C      +  +  +    +K     TV   +     L  
Sbjct: 169 NKRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTVFEKGRKYRTVYFNEEAEFYLKE 228

Query: 248 TPIGKETFFINNDKQKMN---------ATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
               ++          ++          +   I  +    +AGVN    H  R+  AT +
Sbjct: 229 YLEERQHLDTKEKHIFVSLLKPYKKLQISGVEIMIRQAGKEAGVNNVHPHRFRRTFATTA 288

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
              G +  ++    G K +D  + Y
Sbjct: 289 WKKGMSIIDIKNLLGHKKLDTTQIY 313


>gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
 gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21]
          Length = 311

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 99/303 (32%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L+  ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSQYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
 gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW]
          Length = 330

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 103/307 (33%), Gaps = 36/307 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128
           +  +          A N+R ++      +        G     + +T  +R+ +E     
Sbjct: 23  VDAFLDMLVAERGAAANTRDAYARDLRDVAAFLAARRGGTALDRASTDDLRAYLEHLHRD 82

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178
                    +  + L+++R  +++ V +   A +P   ++ PK      +  T+ D    
Sbjct: 83  TGKTPSAGRTVARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVALL 142

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                +    EG +     E L  +GLR S+     +  L  +  + +   K G    V 
Sbjct: 143 LEGAARRGGPEGRRLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGKERMVP 202

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGV 282
           L     + LA     +  F +   + +                  +F    K  A + G+
Sbjct: 203 LSQPAKEALAACLPDRPYFMVPGREARQQGLLFPSRSAAGVLTRQRFGQLMKELALEVGL 262

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
           +    S H +R   AT   D GA    +    G   +   + YT  A DR+R  ++    
Sbjct: 263 DPGKVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHP 322

Query: 339 ISSVVDS 345
           ++    S
Sbjct: 323 LAKRRGS 329


>gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
 gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2]
          Length = 322

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 46/306 (15%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125
           +  + +Y    +    L+ N+R S+E    +            I              ++
Sbjct: 6   EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKN 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  +  ++L ++R  F + + +E    +P   +  PK +       ++  + +    
Sbjct: 66  QGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGE 125

Query: 186 WSEGS---------------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +                             +     E L   GLR S+     V  + 
Sbjct: 126 GGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDII 185

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267
               +++ +        V + +  +++L               K            +   
Sbjct: 186 FETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQ 245

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K  A   GV ++   H  R   AT   D GA    +    G   +   + YT  
Sbjct: 246 GIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHL 305

Query: 326 ADRIRL 331
           + +  L
Sbjct: 306 SRQRLL 311


>gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 372

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--- 132
             Y +       A+ +  ++ + FD+  R         I    I++ ++       S   
Sbjct: 103 EAYFQKLELKRYALKTAENYTACFDRFKRHFPTRKLMSIDETDIKNYLKGLAQRKYSDSF 162

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + S++    +         N    +ERP +        +KE++    +      + 
Sbjct: 163 VNLSINSIK----FYYEVVEGMPNRFYDIERPMKTERLPEILSKEEVIAMINKTF-NIKH 217

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVELPDGFMKLLAM 247
           +     L  SGLR  +     +  +     +I+ ++         I  E     ++L   
Sbjct: 218 QCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKDRYSILSEKLLLKLRLYYK 277

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                   F     Q  + +         A  A +NK    H +R   AT   +AG    
Sbjct: 278 QYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNANINKPVRPHMLRHSFATHLLEAGTDLR 337

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +    G  +    E YT  A
Sbjct: 338 HIQLLLGHNSTKTTEIYTHVA 358


>gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02]
 gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18]
 gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140]
 gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19]
 gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11]
 gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18]
 gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1]
 gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1]
 gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332]
 gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2]
 gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC
 gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC
 gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090]
 gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291]
 gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02]
 gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19]
 gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11]
 gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18]
 gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1]
 gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332]
 gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679]
 gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2]
 gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62]
 gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 305

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L++ R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           V L    ++ L      ++T       F   +  +++  Q     ++ A + G   + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
 gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113]
          Length = 300

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH- 128
            I ++     +   L+  + +S+     +++   G     +++ +  + +R+ V +    
Sbjct: 8   WIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCGRNGIGNWQALDAQKVRALVAAYHQT 67

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+++R  + +  R+  V  NP   +  P+ K         +   Q  +  
Sbjct: 68  GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDVDQAAQLLNTK 127

Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
             G    + +   E    SGLR ++     +  L  +   ++    G     V L     
Sbjct: 128 PCGDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187

Query: 243 KLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             L      +  +   + +        ++++        +    + G +     H +R  
Sbjct: 188 AALLAWLPIRAGWISQSQEAVFVTRRGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A+   ++      +    G   +   + YT   D   L 
Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286


>gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae
           WPP163]
 gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163]
          Length = 311

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+         I+  +G  D+RK+    +RS V   K   
Sbjct: 20  VDAFLRYLKAERQLSPLTLTSYSRQLSAVITILSAAGVVDWRKLDASGVRSVVSRSKRDG 79

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V +  +  NP   V  P+      +    ++M +      
Sbjct: 80  LHSASLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEMNRLLEIDL 139

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + R   E +  +GLR ++      QH+   +       K      + +    + 
Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLPIGKTAVT 199

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L                 FI+N  ++++       F     K GV  +   H +R   A
Sbjct: 200 WLERWLALRELFGPQDNAVFISNQGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296


>gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC
           27678]
 gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 318

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 43/298 (14%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+ ++         L+  +  ++ S   + +      G  D   +TT+H+   V S  
Sbjct: 5   ERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLD 64

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  SA    + L S+    ++A+ +  V  +    V+ PK  +      + +++ +   
Sbjct: 65  DSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMD 124

Query: 185 FWSEG-------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                                    + +   EF+  +G R S++C   +  +  +    +
Sbjct: 125 SIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVAR 184

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFS 270
              K      V +     + L                        F+N   ++++     
Sbjct: 185 LMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVW 244

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +    +A +      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 EIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 302


>gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 306

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 81/289 (28%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  + +S       + N+  ++       +           G     +I+   +R+ 
Sbjct: 9   RDALQLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAW 68

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  ++ +     S  + L++++  ++W   +E       LS   PK   +  RP  ++  
Sbjct: 69  MAQQRDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                  K    
Sbjct: 129 RAMIETVELQSSSDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPATLRIVGKGDKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + +              +           N             + G+  +
Sbjct: 189 RIVPVIPAARQAVDRYLELCPHPQGATEPLFRGVRGKALNPKAIQSVMAKARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT   D  RL 
Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 296


>gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           PRL2010]
          Length = 322

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 46/299 (15%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           L+ ++         LA  +  ++ES   + +       G  D   I    I   V     
Sbjct: 8   LLDQFIAHISVERGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDS 67

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA    + L S+    ++A+ Q  V+ +   +V+ PK         T +++ +    
Sbjct: 68  DGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDA 127

Query: 186 WSEG--------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223
             +                      + R   EF+  +G R S++    +  +  +     
Sbjct: 128 IPDPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVA 187

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269
             T K      V L +   + L                    +   F+N   ++++    
Sbjct: 188 RLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSRQSV 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               K    +AG+++    H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 248 WEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 306


>gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
 gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC
 gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B]
          Length = 296

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 84/274 (30%), Gaps = 19/274 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
            + Y  +     L+  +  ++    ++     G   +++++ + +   +        +P 
Sbjct: 11  FTRYLATE--RQLSPMTVRNYRFELERADTLLGQRSWQQLSRQDLSGLMARLHRQGLSPR 68

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S     ++++   ++ +++  +  NP  ++  PK+     +    + +        E   
Sbjct: 69  SLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSVNHLLDIPPEDGL 128

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + +   E     GLR ++     V+ L      ++          + +    +  +  
Sbjct: 129 ALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERILPVGSVALAAIGD 188

Query: 248 TPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
               +      +          +++        +  A   G+      H +R   AT   
Sbjct: 189 WLKVRNQMPCQDDALFVSSRGSRLSHRSIQARMEKWAQIQGLSVGVHPHKLRHSFATHML 248

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++      +    G   +   + YT   D   L 
Sbjct: 249 ESSGDLRAVQELLGHANLATTQIYT-SLDFQHLA 281


>gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523]
          Length = 292

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 91/266 (34%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130
           I+ + ++  +  + +  +  +++    Q+ +   D +   +T   I   ++      ++P
Sbjct: 7   INNFLENLLYLKNYSQETINNYQKDLLQLNQALNDKNITSLTYSDILIWIKKLHAQGNSP 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L+S+R  F + +  E V  NP   ++ PK      +    +++           
Sbjct: 67  KTLQRKLSSVRSFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDELAYLLDVNPSND 126

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +    F+ L   G+R S+     ++ +  +  SI+                 +  L 
Sbjct: 127 IEARDIACFDLLYSCGIRLSELSSIELKDISISQKSIRVTGKGNKQRITYFGPKTLSNLD 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISA 298
                ++T   N +   ++     +  ++   +  +        +   H +R   A+   
Sbjct: 187 RWLKIRDTLKPNCNYLFISRDGKHLTNRSIQKRLEIFSQKYASRHIHPHMLRHSFASHML 246

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           D+      +    G   +   + YT 
Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272


>gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae
           T3T1]
          Length = 295

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
           L+++Y         ++ ++  +++   D I+    +   +          + I +    +
Sbjct: 4   LLNQYWDYLRIERQVSPHTLTNYQHQLDAILAILAEKGIQHWQQVNPSVVRLILAESRKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R  F + V+Q  + +NP   +  PK+     +    E +Q+  S  
Sbjct: 64  GLKEKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSND 123

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           S+     + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183

Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +      +  F              ++         +    + G+  + + H +R   
Sbjct: 184 HAIQQWLKVRPLFNPKDDALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC
           19061]
          Length = 304

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 21/271 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +   +  +   +     K G  +++ +   ++R  V   +   
Sbjct: 12  VEAFLRYLRVERRLSPLTITHYRHHLTVLAEISLKIGISEWQALDPVNVRLFVSRSRRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V Q  +A NP   V  P++K    +    +++ Q  +   
Sbjct: 72  LESASIALRLSALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDEVNQLLNINL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      + +  ++       K      V       +
Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGKGSKERKVPFGRMAQE 191

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E F   ND         ++++A      F+    + GV  + + H +R   
Sbjct: 192 WLQRWLEMRELFEPENDAVFISSKSGKRISARNVQKRFEQWGIRQGVNSHINPHKLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   ++      +    G   +   + YT 
Sbjct: 252 ATHILESSGDLRAVQELLGHANLSTTQIYTH 282


>gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
 gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1]
          Length = 327

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 85/289 (29%), Gaps = 24/289 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR- 126
             +  +  +      L+ N+  ++        R                  ++     R 
Sbjct: 35  DALDLFMDALLLEDGLSRNTLAAYRRDLTAWGRWLAHQQPPLALDAAGELELQGYFAVRV 94

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   SS+ + LT +R  + WA+R++ +A +P   +   ++        T+  ++     
Sbjct: 95  EQTKASSSNRRLTVLRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQVEALLRA 154

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
               +    + R   E +  SGLR S+     +  +      ++          V     
Sbjct: 155 PDVDTPLGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLVPFGQE 214

Query: 241 FMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               L                 +  F+      M+   F +  K  A  AGV    S H 
Sbjct: 215 AHWWLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTAPLSPHT 274

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT   + GA    +    G   +     YT  A      +    
Sbjct: 275 LRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALH 323


>gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 106/313 (33%), Gaps = 25/313 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-- 106
           A + +       +     P + K ++ ++          + ++   + +    ++     
Sbjct: 2   ARSETEAADADDSQYEALPASFKEVLGQFVHHLTHECGRSAHTVRGYRADVTSLLVHLAA 61

Query: 107 -GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G      +    +RS + +R+      +S  + ++++R    WA RQ ++  +    + 
Sbjct: 62  TGTTRLAGVDIAGLRSWLANRRAQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLS 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            P            +  +   +  +      G + R   E L  +G+R S+ C   V  +
Sbjct: 122 GPSVPHNPPEILRTDQAETLAAATASDGSATGLRDRAVVELLYATGIRVSELCGLDVASV 181

Query: 218 QNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNA 266
             +   ++    G    TV       + +             +             +++ 
Sbjct: 182 DRSRNVLRVFGKGAKERTVPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHP 241

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
           +      +   ++ G+   + HG+R  +AT   D GA    +    G  ++D  + YT  
Sbjct: 242 STVRRVLRDWLSRTGMPSLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHV 301

Query: 325 GADRIRLGIKNSR 337
            A+R+R   + + 
Sbjct: 302 SAERLRGAYRQAH 314


>gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 326

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 109/299 (36%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSG-- 122
           Y ++      + N+  S++       R                D + + I+ + I++   
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNISL 80

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + +++  F++   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N+I ++  +  
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGN 200

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 201 -KERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           AG++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 AGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 307

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 21/284 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE 124
             ++   +  +   A     +  +  S+    +   +   D    D   ++T+ +R    
Sbjct: 2   TQSVGDAVKVFLDDAALR-FSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    SS  + L+ +R   ++   + +V      +V  PKR     R   +E++  
Sbjct: 61  DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAA 120

Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                        + R   EFL  +G+R S+     +  L  +    +   K G    V 
Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVM 180

Query: 237 LPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN-KSAHG 288
           +    +  L                FIN    ++         + +  +  G+     HG
Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   + GA    +    G  ++   + YT    R +L 
Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283


>gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
 gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113]
          Length = 305

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPS 131
           +  +  +      LA N+  ++    +   R          +   + + + +  R     
Sbjct: 16  LERFLDTLWLEEGLAENTLAAYRRDLEGFSRWLDSQGRALIRAQREDVLAYLAHRLEGGG 75

Query: 132 SAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
            +     S   +R  +++ +R++    +P   VE P+         ++ +++   +    
Sbjct: 76  KSRSVARSVSSLRRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEVEALLAAPKT 135

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L +    ++ + K      V L +  + 
Sbjct: 136 NDSLGLRDRTMLETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKERLVPLGEVALS 195

Query: 244 LLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            L                 E  F+      M+   F    K  A ++G+ K+   H +R 
Sbjct: 196 WLDRYCHEARPGLVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKTLSPHTLRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   + GA    +    G   +   + YT  A R RL
Sbjct: 256 AFATHLLNHGADLRVVQILLGHADLSTTQIYTHVA-RARL 294


>gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 283

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 110/285 (38%), Gaps = 23/285 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + E+ K+         +  ++  +  + ++   + + ++    HI   +E+  ++ S   
Sbjct: 1   MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLEN-NNSHSYVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWS 187
           Q ++++++L     ++ YV ++   +         RPK++ +     +++++ +  +  +
Sbjct: 60  QAISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTT 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245
              + +     +  SGLR  ++ R   + L     I  IK  K        L D  +K+L
Sbjct: 120 -NIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKIL 178

Query: 246 AMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                  +         N+   ++       F+    KA +NK  S H +R   AT   +
Sbjct: 179 RNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLE 238

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           AG     +    G ++    E YT    +      N  RI S +D
Sbjct: 239 AGTDLRYIQKLLGHESSKTTEIYTHITTQ------NISRIESPLD 277


>gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
 gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476]
          Length = 312

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 98/288 (34%), Gaps = 33/288 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           +I  + +        + ++  +++        +         + +      + S + +  
Sbjct: 6   VIERFLEMMSAERGASAHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIGLLSLMHTFG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
              +S  + L+++R  +++   +   A +P   ++ P++     +  +++ + +F     
Sbjct: 66  FAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIKFLDLAQ 125

Query: 185 -----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232
                       +    + +L  E L  +GLR S+     VQ ++   +S+    K    
Sbjct: 126 LEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVRGKGKKE 185

Query: 233 ITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVN 283
             V L     ++L      ++          F  +++   +     +   K  A +AG+ 
Sbjct: 186 RMVLLSKKAYQVLLQWLDLRDQGKDAKSLYLFPAHSETGYIARQVVARELKNLAKRAGIT 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               S H +R   A+     GA    +    G   +   + YT   + 
Sbjct: 246 SESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEE 293


>gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC
 gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC
 gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC
 gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 20/284 (7%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG 122
              TL   +  +         ++ ++  ++      +I  +   G  D  ++ +  +R  
Sbjct: 24  ADATLSA-VEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKF 82

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    ++ 
Sbjct: 83  VTAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEA 142

Query: 180 QQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITV 235
            +          G + R   E    SGLR S+ C    + L  +        K G    V
Sbjct: 143 VRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLV 202

Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            +    +  L           +   F       ++     I  K  A + G+  +   H 
Sbjct: 203 PVGSHAVAALRAWQRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHM 262

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 263 LRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 305


>gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92]
 gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92]
          Length = 299

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 86/260 (33%), Gaps = 20/260 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
             L+ ++  ++    ++    +   G   +  +T K +R              S  + L+
Sbjct: 17  RQLSPHTLDNYTRDINRFFDFTEEQGIPAWSSVTAKQVRQFAAQIHRQGLAGKSIQRSLS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           ++R  F++  R+  V  NP  +V+ PK + +       + + +      + +   +    
Sbjct: 77  ALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVDQIDRLLDIPVKDAVSARDSAI 136

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
            E +  SGLR S+     +  L     S++   K      + +    ++ +      +  
Sbjct: 137 MELIYSSGLRISELVGLDIHSLDLADHSLRVLGKGNKQRELPIGRKALQAIDRWLDYRHE 196

Query: 255 FFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
               ++         ++++                V  +   H +R   A+   ++    
Sbjct: 197 LASFDENALFVSSRGKRISVRTVQQRMYHWGKYLEVNGHVHPHRLRHSFASHMLESSGDL 256

Query: 305 HELMATYGWKTVDQAETYTK 324
             +    G + +   + YT 
Sbjct: 257 RAVQELLGHEDISTTQIYTH 276


>gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
 gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062]
          Length = 295

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 87/292 (29%), Gaps = 42/292 (14%)

Query: 90  NSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           N+  S+ +  +           D   +    +R+ +          SS  + L+++R  +
Sbjct: 11  NTLESYRTDLEDFDSFLTTQGVDLLAVQVTDVRAYLSDLTDRGFAASSQARRLSALRQFY 70

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------------EDMQQFKSFWSEGS 190
           ++   ++    +P  +V  P++        ++                     +     +
Sbjct: 71  QFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEELANITHDSDAKQIRAA 130

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIIT----------VELPD 239
           +     E L  +GLR S+     V   ++++       K G              +    
Sbjct: 131 RIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERAVPLSPRAQSAMVEYV 190

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                +         F  + +        F    KA A +A +++   S H +R   A+ 
Sbjct: 191 RLRAAVGAYADSVWLFPSHGESGHFTRQAFGRDLKALALEADIDRNKVSPHVLRHAFASH 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               GA    +    G   +   + YT   +          R+  +V+   P
Sbjct: 251 LLQNGADLRVVQQLLGHADISTTQIYTHVLEE---------RLQKLVEDHHP 293


>gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
          Length = 376

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 102/332 (30%), Gaps = 32/332 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I              ++ +T      +Y NS  +       L+  + +     S
Sbjct: 23  TGKRKQITKGGFKTKKAAQEEVARVTNDLANGDYENSDIR----FSQLVEIWTQEKE-SS 77

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142
              ++   ++     +++ + G+     I    + +  +       +     +    ++ 
Sbjct: 78  CRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKEGLTTKYISSVDVMLKQ 137

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +    V  E +  NP    +RPK K +    WT E+  +F  +        +AF   L++
Sbjct: 138 ILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYAKIQGSYYIAFVLALHT 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLL 245
           G+R  +      + +      I  Q+T                    +     +   + L
Sbjct: 198 GMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEASNRMIPMTQELMREPL 257

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
                 K+  F      +     +        KA      V     H +R+   TI  D+
Sbjct: 258 EYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYIRFHDIRRTFTTILIDS 317

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           GA A  +    G   V      YT   +  ++
Sbjct: 318 GANAKVVSKLLGHTNVSTTLNIYTDVYEERQI 349


>gi|307691931|ref|ZP_07634168.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 390

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 89/335 (26%), Gaps = 39/335 (11%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           +      ++ L       +          TL   +  + +     +L  N+  S+E Y  
Sbjct: 31  AKTQKELLAKLHRDMDLYQDAQLTEDSRMTLGEWLDRWMEEYGAVTLRPNTLRSYEQYIR 90

Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--------------SAIQFLTSMRVLFK 145
             +    G     ++T   I+      K                    ++    +    K
Sbjct: 91  CYVKPYLGGKIVSRVTRLDIQKLYRKLKKEGRVHDHPEYGHELSDSMVLRIHAMLHRCLK 150

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A R   V  NP   V+ PK   +  +   +E M  F +   +    R  F   L +GLR
Sbjct: 151 DAERDHIVPYNPTDGVKLPKSNYKPKQVLDREQMDAFLAAVDKNEIWRDFFYTELTTGLR 210

Query: 206 CSDSCRAGVQHLQNN---------------------IFSIKTQKTGTIITVELPDGFMKL 244
             + C    +    N                         +  +    +         + 
Sbjct: 211 RGEICGLMWRDFDENAGTLKILRSVNVPKRGELEIGETKTERGRRTIRLPPSTVQRLKER 270

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
                           ++ +  +    W K    +AG+     H +R   AT +  +G  
Sbjct: 271 KKHAISQWIFPEPLAPEKPVRPSAAYYWMKVLLKEAGLPHIRFHDLRHTFATHALASGVD 330

Query: 304 AHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNS 336
           A  L    G        +TYT    D  R      
Sbjct: 331 AKTLSGILGHTNASFTLDTYTHVTPDMQRAASDVV 365


>gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
 gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp.
           HGA1]
          Length = 323

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 32/284 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGV---ESR 126
            LI  +  +     + +V++  ++        R +       +  T + +R  +   +  
Sbjct: 23  ELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRA 82

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +++ ++  + L+++R  F+W         +P   ++ PK+           DM +  + +
Sbjct: 83  QYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVY 142

Query: 187 -------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIF 222
                        S  ++     EFL   G R S++      ++             +  
Sbjct: 143 GKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKE 202

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            I       + ++     + + L +     + FF++    +M        FK    +AG+
Sbjct: 203 RIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGL 262

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   S H +R   AT   D GA    +    G  ++   + YT 
Sbjct: 263 DESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTH 306


>gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
 gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942]
          Length = 304

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 89/283 (31%), Gaps = 27/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVE 124
              L  EY +     + +  + +++    ++                    T+   +   
Sbjct: 7   FLKLFVEYLQIE--KNYSQYTIVNYVDSIEEFETFLRVQRINGFEEAAYHDTRIFLTEAY 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            +  +  +  + ++++R  +K+ +R++ V  NP   V  PK++    +   +++      
Sbjct: 65  EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFA 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
              +    G + +   E L  +G+R S+     V  +   + ++    K      +    
Sbjct: 125 VSDTSLPTGQRDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQRYIPFGS 184

Query: 240 GFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
              + L +                 +  F+N     +              KA   ++  
Sbjct: 185 YAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGVRYILSGLVKKASGTLHIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R   AT   + GA    +    G   +   + YT  +  
Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKE 287


>gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
 gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis
           ATCC 8503]
 gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3]
          Length = 302

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           LI ++     +  + +  +  ++    DQ  R       G F+  +I +  +RS + S  
Sbjct: 2   LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
               +P S  + L+S++  FK+ +++  V+ NP   V  PK K                 
Sbjct: 62  DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   EG + RL  E L  +G+R S+        +      +K         +    
Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181

Query: 240 GFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             +K L +                FF+  +  +++        K + ++  +   +S H 
Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA  + +    G  ++     YT  
Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHT 278


>gi|154247950|ref|YP_001418908.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154162035|gb|ABS69251.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 467

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 106/354 (29%), Gaps = 24/354 (6%)

Query: 7   LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---- 59
           +P F+ K      K     Y    G  R+  +    E T   A   A       R     
Sbjct: 28  IPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRRGADP 87

Query: 60  -YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTK 117
               +  ++  T+K L   +           ++  S   +    I+   G      +T  
Sbjct: 88  SAERTASRQAPTVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTRS 147

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I + ++    +P +A + L+++R +F  A                PK    G      +
Sbjct: 148 DIANLMKKMSKSPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGKTRLITD 207

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235
              +    + + ++        +   +R      A +  +    +S        ++    
Sbjct: 208 AEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWVDFDNRRVVWPDS 267

Query: 236 ----ELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                      + L +                + + K+ M+   +   +K    +AG+  
Sbjct: 268 KTGGMSKPMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRILKRAGLPH 327

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
              HG+R  SAT  A++G      MA    KTV     Y    D  +R   +  
Sbjct: 328 VGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTEDDPVRAAAEAV 381


>gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2]
 gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 85/266 (31%), Gaps = 25/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138
              +  ++ +++   +   R     G+ D+  I  + +R   S +  R ++ +S  + + 
Sbjct: 18  RGYSDKTKSAYQEDMEDFFRFLKESGNEDFLAIDHRDVRVYLSFLNERNYSRNSISRKMA 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           S+R  + +  + E +  NP   +   K+  +  R + +++M+              + R 
Sbjct: 78  SLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKEMEALFESVKGHEPLQQRNRA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  SGLR S+     +  +      +    K      V       + L        
Sbjct: 138 LLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGKGNKDRYVPFGSYAQEALRDYVSAGR 197

Query: 254 TFFINNDKQKM------------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
              +    ++              AT           K+ ++     H +R   AT   +
Sbjct: 198 QQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHMLRHTFATHLLN 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            GA    +    G   +   + Y   
Sbjct: 258 HGADMRTVQELLGHANLSTTQIYAHV 283


>gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J]
 gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J]
          Length = 314

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 28/304 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFD 110
               R+   +P   P +    I  +  +      LA N+  ++              +  
Sbjct: 2   RKAARKDAEAPSLPPQS-ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERNKS 60

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +     +     +R      SSA +  T  +  F+WA+R+  V  +P   +   K+  
Sbjct: 61  IAETEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVNTDPSRLLPTAKQPP 120

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222
              +  ++  ++   +     +    + R   E +  SGLR S+        +     + 
Sbjct: 121 RFPKTLSETQVEALINAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 180

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------------MNATQF 269
            +   K G    V         L      ++T       ++             M    F
Sbjct: 181 RVVGGKGGKDRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQAF 240

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 241 WYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA- 299

Query: 328 RIRL 331
           R RL
Sbjct: 300 RERL 303


>gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 312

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
            ++++++         ++N+ +S+    D++I+             D   +    +R   
Sbjct: 8   DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWF 67

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
            SR        +  + L+++R  F++  R  Y+       + RP  K    +        
Sbjct: 68  ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 127

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                 +         +       L  SG R S+      Q ++ +   I  +     + 
Sbjct: 128 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 187

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284
             L   +  L                 Q +         + T F+   +    + G+   
Sbjct: 188 PILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 247

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AH  R   AT     GA    +    G  ++   + YT 
Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 288


>gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2]
 gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2]
          Length = 329

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 38/314 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--- 106
           +       E    P   P  +   ++ +    A     +V +  ++   F+   R     
Sbjct: 1   MVKKNAVTENAQQPAVPPAIVAEWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSS 60

Query: 107 ----------GDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
                           K+T + +R       R+    +    ++ +R  +K+ +R   V+
Sbjct: 61  GLRDAANESAASLAPDKLTPRDLRDFVIEGQRRFDRRTLHNHVSGLRSFYKYWLRHGRVS 120

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFK------------SFWSEGSQPRLAFEFLLYS 202
            NP + +  PK +    +  T++ M+                      + RLA E L   
Sbjct: 121 RNPLVGLALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGG 180

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258
           GLR S+        +       +   K        L    + +L                
Sbjct: 181 GLRVSELTALDYGQIDFTSGVARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAP 240

Query: 259 ----NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312
                + ++M   Q  +  K     AG+    S H +R   AT   +AGA    +    G
Sbjct: 241 VLVTPEHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLG 300

Query: 313 WKTVDQAETYTKGA 326
             +++  + YT  +
Sbjct: 301 HASLNTTQIYTHVS 314


>gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP 130
           +S + +       L+  +  +++   D II  +G+     +++     +RS     +   
Sbjct: 10  VSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKG 69

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +      
Sbjct: 70  LGSASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDL 129

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL  +        K      + +    + 
Sbjct: 130 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVT 189

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F  + +        ++++A      F     K G+  +   H +R   A
Sbjct: 190 WIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 250 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 286


>gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
 gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679]
 gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022]
          Length = 318

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 43/298 (14%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + L+ ++         L+  +  ++ S   + +      G  D   +TT+H+   V S  
Sbjct: 5   ERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLD 64

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  SA    + L S+    ++A+ +  V  +    V+ PK  +      + +++ +   
Sbjct: 65  DSGESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLMD 124

Query: 185 FWSEG-------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                                    + +   EF+  +G R S++C   +  +  +    +
Sbjct: 125 SIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVAR 184

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFS 270
              K      V +     + L                        F+N   ++++     
Sbjct: 185 LMGKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSVW 244

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +    +A +      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 245 EIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 302


>gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 363

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 9/258 (3%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y         +V++  ++ ++F++ I      D   +    IR  ++S      S   
Sbjct: 96  ENYLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSY 155

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++  + K+         N    +ERP+R+    +  ++E++       +   + R  
Sbjct: 156 INQAINAI-KFYYEVVCGMPNRFYDMERPRREHRLPQVISREEIFAIIENTN-NIKHRCI 213

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKE 253
            E L  SGLR S+     +Q + +    IK +  K        L +  +  L       +
Sbjct: 214 VELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWK 273

Query: 254 TFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                 + Q     +        K  ++KA  NK  S H +R   AT   ++G    ++ 
Sbjct: 274 PEIYLFEGQPGKQYSGASVLKVVKNASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQ 333

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  +    E YT  A
Sbjct: 334 VLLGHGSTKTTEIYTHVA 351


>gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1]
 gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 81/288 (28%), Gaps = 34/288 (11%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRK 127
           ++         L+  +  ++     Q    +    G       +  +    IR+ +  R+
Sbjct: 27  QWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGGPVTLARFAALEAADIRAFMAMRR 86

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S ++ L  +R   ++  R+    +     +  PK      +P   +  ++   
Sbjct: 87  ADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGIRAPKIAKSLPKPLPMDAAKRLAD 146

Query: 185 FW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTI 232
                         ++       L  SGLR S++     + +           T K    
Sbjct: 147 ADERAGETRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLVVTGKGNKT 206

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN-- 283
             V +    ++L+                         ++     +  +      G+   
Sbjct: 207 RMVPVLQNVLQLIDDYARLCPYPLPAEGPMFLGAKGGPLSPRIIQLAMERLRGALGLPDS 266

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 267 ATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDSERL 313


>gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654]
 gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654]
          Length = 313

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +S +          A N+  ++       +           G      +T   +R+ 
Sbjct: 12  RDALSGWLDHLRALDGAAANTIEAYRKDVVSFLAFLSAHHGTSHGRTALASVTISDMRAW 71

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + S +    SA    + L++++  ++W   ++    +  LS   PK   +  RP ++E  
Sbjct: 72  MASERAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTRAPKFTAKLPRPVSQEAA 131

Query: 180 QQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           ++  S           G++       L   GLR S++     +            K G  
Sbjct: 132 EEVISTTAIQARDGWIGARDAAVVTLLYGCGLRISEALGLTGRAHPLPDVLRIVGKGGKE 191

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVNKS 285
             V +       +A           ++                     ++   + G+  +
Sbjct: 192 RLVPVLPAARDAVASYVRLCPYPVTDDTPLFYGARGKALGPRTVQKAMESARLQLGLPAT 251

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 252 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTQRLM 299


>gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           BCC215]
          Length = 310

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 92/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I +Y  +      L+ ++  ++    D++ R +       +T   +R   +   +   + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAIDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234
               +     E    SGLR ++     ++++++  +                 K      
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVHGKGDKERK 189

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296


>gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
 gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82]
 gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164]
          Length = 306

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRK 127
           L+S + K     + + ++  ++       +            I    +R      VE  +
Sbjct: 8   LLSMWLKEREIQNQSAHTLSAYARDVKDFLDFCAVKKLPLNSIEASDLREYLALKVEREQ 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            + SS  + L+++R   KWA + +Y+  NP    +  ++          E +QQ      
Sbjct: 68  LSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILDQPA 127

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                      + +   E L  SGLR ++     ++ +  N   ++          V   
Sbjct: 128 PEKLQDQHLWLRDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTRIVPFG 187

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAG--VNKSA 286
               + L         +    +            ++   Q     K +A +AG  ++   
Sbjct: 188 TQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVNIDLHP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+           +    G   +   + YT 
Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH 285


>gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC
 gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 30/287 (10%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRK 127
            L+  + +      +L+  +  ++        +    +   + + ++T KHIR  +   K
Sbjct: 4   ELLD-FLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLK 62

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+  + L+++R LFK+  R+E +  N    +  PK++ +     + E+++   +
Sbjct: 63  DKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLIN 122

Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
              +   G + +   E    SG+R  +     +Q+L         T K        L   
Sbjct: 123 APGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSF 182

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKAT--KAGVNK 284
            +  +           +  +K   N                      K       +    
Sbjct: 183 ALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEHRV 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           S H +R   AT   + GA    +    G   +   + YT   ++ R+
Sbjct: 243 SPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTH-VNQARM 288


>gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51]
 gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 46/306 (15%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVES 125
           +  + +Y    +    L+ N+R S+E    +            I              ++
Sbjct: 6   EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKN 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  +  ++L ++R  F + + +E    +P   +  PK +       ++  + +    
Sbjct: 66  QGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGE 125

Query: 186 WSEGS---------------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +                             +     E L   GLR S+     V  + 
Sbjct: 126 GGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDII 185

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267
               +++ +        V + +  +++L               K            +   
Sbjct: 186 FETRTLRCRGKGSKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQ 245

Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K  A   GV ++   H  R   AT   D GA    +    G   +   + YT  
Sbjct: 246 GIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHL 305

Query: 326 ADRIRL 331
           + +  L
Sbjct: 306 SRQRLL 311


>gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden]
          Length = 318

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 85/281 (30%), Gaps = 29/281 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
            ++++++         ++N+ +S+    D++I+             D   +    +R   
Sbjct: 14  DIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWF 73

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
            SR        +  + L+++R  F++  R  Y+       + RP  K    +        
Sbjct: 74  ASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIE 133

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                 +         +       L  SG R S+      Q ++ +   I  +     + 
Sbjct: 134 IILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERVV 193

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNK- 284
             L   +  L                 Q +         + T F+   +    + G+   
Sbjct: 194 PILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDI 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AH  R   AT     GA    +    G  ++   + YT 
Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTH 294


>gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
 gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126
             + ++        + +V++   +ES     +      G  D   +   H R  V     
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFLQGEGIHDLASVEYIHARLYVTKLYD 66

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K   +S  + ++S+R  F++  RQ         S+  PK+++     + +E++ Q    
Sbjct: 67  EKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDA 126

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239
            +    +  +     E L  +G+R S+     V+ +  +   I+    G    I      
Sbjct: 127 NTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQF 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS--AHG 288
             + +L      +       + Q++                       KA ++     H 
Sbjct: 187 ASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHM 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA    +    G   +   + YT  
Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283


>gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
 gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223]
          Length = 310

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   +   + + + G   + ++    +R  V
Sbjct: 10  PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  SGLR ++     ++ +      I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +     +++          +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294


>gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
 gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC
 gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++               I+      +    + 
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L              +  F++   +++      +  K    +  G N   H +R   A
Sbjct: 185 QALETWLPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
 gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM]
          Length = 352

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 24/327 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G   YY RK    ++ L         F+  Y +A+             R    +L  +I 
Sbjct: 9   GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAM------GTKKTPSRAAKDSLGHIIE 62

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            ++ SA++ + +   R +   + D +    G   + +I   HIRS +     +P +A   
Sbjct: 63  LFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLSQL--SPHAANDR 120

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L   R+L ++A    +        ++R K    +G RPW+  D+  F++ W  GS  RL 
Sbjct: 121 LKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRLC 180

Query: 196 FEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQKTGTIITVELPDGFMKL 244
           FE L ++  R  D+       +           +    +            +  +    L
Sbjct: 181 FELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALPGWAKHFETDRTL 240

Query: 245 LAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302
           L          F+     +  +    S    A A +A +   SAHG+RK   T  A+AG 
Sbjct: 241 LKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEAGG 300

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
           +A  +M+  G K++ +AE Y   A+R 
Sbjct: 301 SASAIMSWGGHKSLKEAEDYVSTANRK 327


>gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
          Length = 321

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 93/316 (29%), Gaps = 24/316 (7%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
            ++  +         + P  + T  +   + + +     +L+ ++   + +         
Sbjct: 2   RLARRSNIIAAVPETDKPEIELTDFETAYNAFIRECKIKNLSEHTLKYYRNELLSFRSML 61

Query: 107 GDFDYRK---------ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                           +    I   ++      +S    L ++R  F +  +   +  NP
Sbjct: 62  EQQGVSTRPEKITLPILKENVIVYMMDKLGRKETSINTRLRAIRAFFNFLEKNRMIGDNP 121

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213
              +   K+K E I  +++E ++       +G+    +       L+ +G+R  +     
Sbjct: 122 AKELSLVKQKKEVIETFSREQLRDILRQPDQGTFTGFRDYTIMLLLIETGVRVRELTDIS 181

Query: 214 VQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNAT 267
           V+ ++     I    K      V +       L      +     +      D   +   
Sbjct: 182 VKDIRWEDSQILINGKGYKERLVPIQSTVKTRLRKYVQIRGDVPNDALFVTIDNTPLTTR 241

Query: 268 QFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           Q           A +     S H  R   A +S   GA    L A  G  ++D    Y  
Sbjct: 242 QVQNRLSKYGRMANIKNVRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVN 301

Query: 325 GADRIRLGIKNSRRIS 340
              R  +     ++ S
Sbjct: 302 LFSRDVM--DAHKKFS 315


>gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 285

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 89/264 (33%), Gaps = 16/264 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L     +     +L+  ++ S+     +  R   +    ++    +R+          + 
Sbjct: 7   LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRFF-NRSPDRLDHDDVRTWQVHLVSQGISW 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S  QF+ ++R  +   +R   +           ++        + +++ +F        
Sbjct: 66  ASLNQFVAALRFFYGVTLRCPEIPERIV----YARQPRRLPIVLSADEVVRFLEAV-PSL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + R A      +GLR S+     +  + +    I+    K      V L    + +L   
Sbjct: 121 KNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTY 180

Query: 249 PI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                 +   F   + + +  T  +   ++    AG++K  + H +R   AT   +AG  
Sbjct: 181 WPLARPEHWLFPGREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHLLEAGTD 240

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +     YT+ ++
Sbjct: 241 IRIIQVLLGHNNLSTTARYTQVSN 264


>gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
 gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451]
          Length = 310

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   +   + + + G   + ++    +R  V
Sbjct: 10  PNALAQPLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  SGLR ++     V+ +      I+          V 
Sbjct: 130 QLLEVSDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +     +++          +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294


>gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336]
 gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC
 gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336]
          Length = 295

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+ +Y         L+  + I+++   ++I   ++++    ++++T   +R  +   +  
Sbjct: 4   LLQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIHSWQQVTPSVVRFVLAQSRKE 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FK 183
                S    L+++R    + V Q  + +N  + +  PK+     +    E +QQ    +
Sbjct: 64  GLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNE 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           S      + +   E +  SGLR S+     +  +      ++          +       
Sbjct: 124 SKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
           + +              E  F++    +++        +    + G+N     H +R   
Sbjct: 184 QAIQQWLKVRLLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   +  +    +    G   +   + YT   D   L 
Sbjct: 244 ATHMLENSSDLRAVQELLGHSNLSTTQIYTH-LDFQHLA 281


>gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
 gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565]
          Length = 325

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 104/305 (34%), Gaps = 26/305 (8%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISE---YRKSAHW-GSLAVNSRISFESYFDQIIRKS-- 106
             TP +    +P   P     L  E   + +       L+ ++R +++++ + +  +   
Sbjct: 2   ARTPAKAPAKAPVIAPPLPAALADELAAFIEYLRVERQLSPHTRNNYQAHLEAMTAELVA 61

Query: 107 -GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            G  D+ ++    +R+ V         P S    ++++R    W VRQ  +  NP   + 
Sbjct: 62  LGLTDWGRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIV 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            PK+     +    ++M Q  +          + R   E +  SGLR ++     +  L+
Sbjct: 122 TPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDLK 181

Query: 219 NNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQF 269
            +      T K      + +    ++ L      +           F+++ KQ+++A   
Sbjct: 182 LDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPLLAGDESEALFVSSRKQRLSARSV 241

Query: 270 SIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                          +   H +R   AT   ++      +    G   +   + YT   D
Sbjct: 242 QARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH-LD 300

Query: 328 RIRLG 332
              L 
Sbjct: 301 FQHLA 305


>gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++           T   I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAFCQKAGLSSWTNLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q             + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAVEEDFLAQRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     K L        
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVGSKARKALESWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++         KA   +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGSADD 290


>gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
 gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN]
          Length = 292

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 94/287 (32%), Gaps = 24/287 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           I ++ K   +  + +  +   +        +     D    +  I T  +R  VE     
Sbjct: 3   IEDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDELSWENIDTDVVRDWVEYMMDK 62

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
            ++A    + L+++R  +++A+++ +V  +P   ++ PKRK    +   + +M      +
Sbjct: 63  GNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAEMDTLLVPE 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
                 +    R        +G+R S+      + +         T K      +     
Sbjct: 123 MWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGKRNKQRIIPFGKE 182

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGV-------NKSAHGVRK 291
             + +      +       +   + A     +        KA +        KS H +R 
Sbjct: 183 LEEQIDTYQKLRNDEIGEQEALFVTAKGERITTAQVRTMVKANLAKVSTLKKKSPHVLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             AT   +  A    +    G +++   E YT    ++++     + 
Sbjct: 243 TFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAH 289


>gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
 gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC
 gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC
 gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6]
 gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 92/280 (32%), Gaps = 22/280 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESRK 127
           + ++ +       L+++++ +++   + +       G   + ++    +R          
Sbjct: 17  LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  +  NP   V  P++K    +    +++ Q      
Sbjct: 77  MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 136

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     V+ +      I+          V      ++
Sbjct: 137 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 196

Query: 244 LLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +              +   F++    +++             K  V  + + H +R   
Sbjct: 197 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   ++      +    G + +   + YT   D   L  
Sbjct: 257 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 295


>gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae FF5]
 gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 299

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 24/299 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124
              +  Y         ++ ++  ++     +++           +   I+      +   
Sbjct: 2   DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q   
Sbjct: 62  QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLD 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
              E      + +   E L  SGLR S+     +  L           K      + +  
Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291
              + L +            +  F++   +++      +  KA   +  G N   H +R 
Sbjct: 182 KARQALEVWLPLRALTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
             A+   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 300

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 24/291 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGV-- 123
           L+ +I E+ +        +  +  ++ S    +               +TT  +R     
Sbjct: 4   LQEVIREFLRYLRAEKDASPETLAAYRSDLRPLEDFLFRERIAPELANLTTPVLRRYFIW 63

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             E RK   +S  + +   R  F++   QEY+  +P   +  PK          +E+++ 
Sbjct: 64  LQEERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEELKW 123

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235
             +           + +L    L Y GLR S+  R     +     +++ +  G     +
Sbjct: 124 LLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRERLI 183

Query: 236 ELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
            L     ++L      +            +  +MN    +  FK     AG++    + H
Sbjct: 184 PLIPELQQILWEYLQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRMAGLDPAVITPH 243

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            +R   AT+  + G     +    G   +     Y    + R+R  ++  R
Sbjct: 244 KLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIR 294


>gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 299

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 24/299 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124
              +  Y         ++ ++  ++     +++           +   I+      +   
Sbjct: 2   DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q   
Sbjct: 62  QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLD 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
              E      + +   E L  SGLR S+     +  L           K      + +  
Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291
              + L +            +  F++   +++      +  KA   +  G N   H +R 
Sbjct: 182 KARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
             A+   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
 gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC
 gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC
 gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str.
           56601]
          Length = 311

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 28/303 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           P     +L     ++        + + N+  ++                D  +I    IR
Sbjct: 9   PEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIR 68

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S              S  + L+S+R  +K  +R++ V  NP   +  PK + E  + +  
Sbjct: 69  SYFAYLAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRI 128

Query: 177 EDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229
            + ++   F SE +      + R   E L  SGLR  +   A +  L  ++       K 
Sbjct: 129 NETEEILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKG 188

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGV 282
                V      +  L      +   F        N   +K+           +  K G 
Sbjct: 189 RKERFVYFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGW 248

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKN 335
            K+   H  R   AT   DAGA    +    G  ++   + Y   +        R    +
Sbjct: 249 EKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPH 308

Query: 336 SRR 338
           +R+
Sbjct: 309 ARK 311


>gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
 gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603]
          Length = 310

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
           P  L   +  +    H    L++ ++ +++   +   + + + G   + ++    +R  V
Sbjct: 10  PNALAQSLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  SGLR ++     V+ +      I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +     +++          +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294


>gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
 gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621]
          Length = 352

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 108/318 (33%), Gaps = 39/318 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG 107
           ++    KR           T+  L  ++  +      A  +   ++    YF   +   G
Sbjct: 9   VSKRKGKRVKKELRTFTTHTIDDLFEKFYHAKVAEGRAERTLHQYKENFRYFTYFLDYKG 68

Query: 108 -DFDYRKITTKHIRSG--------------------VESRKHTPSSAIQFLTSMRVLFKW 146
              +   ITT  IR+                      +    +PS+    L ++RV+F++
Sbjct: 69  LSRNIDTITTDVIRNYVVFMKNEKIQFEDHNYKPSDCKKVGLSPSTINTRLKTLRVMFRF 128

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYS 202
            + +E +  NP   V+      E I   T +++++             +  +    LL +
Sbjct: 129 LIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLLDT 188

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLA-----MTPIGKE 253
            LR S++    V  +  +   I  +    K+     V + +    LL            +
Sbjct: 189 FLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFETD 248

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
             FI N +++M+   F    K  A + G+ K    H  R   AT+  +AG     L    
Sbjct: 249 HVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQMLL 308

Query: 312 GWKTVDQAETYTKGADRI 329
           G   +     YT  + + 
Sbjct: 309 GHADLRMVMRYTHLSKQA 326


>gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1]
 gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1]
          Length = 307

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRS 121
           ++ L++ +          A  +  ++ +   + +       G        R + T+ +R+
Sbjct: 9   VRDLLAGWLTHLRGVRGRAEATLTAYGADVGEFLAFQADHLGGSPGPAALRTLQTRDLRA 68

Query: 122 GV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +    +R     S  + L++++  + W   ++       LS+  PK      RP T+  
Sbjct: 69  WMSSQRARDVGARSLARRLSAVKAFYNWWAERDGFDATAVLSMRAPKHTRRLPRPLTEVG 128

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +                ++       L   GLR S++       L        T K G 
Sbjct: 129 AKDMIAGLADQDDRDWVQARDMAVVTLLYGCGLRISEALGLTADLLPLPGILRITGKGGK 188

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284
              V +        A                F       +     +   +    + G+  
Sbjct: 189 EREVPVLPAAQDACARYAQLCPHDLAPGTPLFRAIRGGALGPRAVAKVMEKTRLQLGLPA 248

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   H +R   AT   DAG     +    G  ++   + YT   D  RL 
Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 297


>gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 95/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESR 126
               I+ Y +       + ++ ++++   +             D ++++  ++R+ +   
Sbjct: 3   FSAFIN-YLELE--RKYSKHTVLAYQKDLEAFFLFLNEHYAVEDPKEVSYVYVRAWIVHL 59

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  S  + ++S++  FK+  +   + ++P    +  K K E   P+++ ++    
Sbjct: 60  TDVGVSHRSINRKISSLKAFFKFLQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVI 119

Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                G      +          +G+R S+     V  +  +  +I    K      + L
Sbjct: 120 KMLQSGEDFSELRDLAIVTLFYATGMRRSELINLKVADIDFDQHNIKVLGKRNKERIIPL 179

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSA 286
                  L      +E + ++ +           K+  T          ++A      S 
Sbjct: 180 IPWLEDGLKKYLSVRENYGVDKNSGFLLLTDKGDKLYETFVCRIINRYFSRASQKTKTSP 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + GA  + +    G  ++   + YT  +
Sbjct: 240 HMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTS 279


>gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
 gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1]
          Length = 299

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126
             + ++        + +V++   +ES     +      G  D   +   H R  V     
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLTFLQTEGIDDLASVEYIHARLYVTKLYD 66

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K   +S  + ++S+R  F++  RQ  +      S+  PK+++     + +E+++Q    
Sbjct: 67  EKRARASISRKISSIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLFDA 126

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +    +  +     E L  +G+R S+     V+ +  +   I+    G    +     F
Sbjct: 127 NTGDDLKSLRNIAILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKERIIPFGQF 186

Query: 242 MKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNKS--AHG 288
             L     I +    +      +                         KA ++     H 
Sbjct: 187 ASLAMQDYIEQARPRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLHTKIYPHM 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA    +    G   +   + YT  
Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283


>gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
 gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 90/294 (30%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVE 124
            T    I+ Y  +      L+ ++   +    D++   +     + +T   IR   +   
Sbjct: 1   MTETDFIAAYLSNLEHERRLSAHTLRGYAHELDELRLLTKGRPLQSLTAVDIRGAVARAH 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   T  S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDANRLME 120

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
                  EG +     E    SGLR S+     V+    +                    
Sbjct: 121 SPPAASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVEVLGK 180

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    ++ L      ++    ++           +++        K  A  A
Sbjct: 181 GNQRRIVPVGSKALEALNAWLAVRDEMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
 gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC
 gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472]
          Length = 299

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 17/277 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
              I  + +       + ++  ++ +  + +         R  T   +R  +        
Sbjct: 2   DEAIRRFIEHLAVAGRSPHTLAAYRADIELLENMMQAKSARDATAAELRKALAKLHAQGL 61

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
              S  + L+S R  + W  R      NP   +  PKR     +    +           
Sbjct: 62  SSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEG 121

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
                ++ R  FE +   GLR S++    +  +  +   ++ +  G     V +    M 
Sbjct: 122 ESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAEAML 181

Query: 244 LLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295
            L          + +   F+     ++   Q     +  A K  AG +   H +R   A+
Sbjct: 182 RLRTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSFAS 241

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               +      +    G   +   + YT   D   L 
Sbjct: 242 HMLQSSGDLRAVQELLGHANLSSTQIYT-ALDFQHLA 277


>gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
 gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985]
          Length = 306

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 87/284 (30%), Gaps = 35/284 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVES----- 125
           + +Y          + ++  S+     +           D  ++T+  +   +       
Sbjct: 5   VQQYLDHLAVERGASKHTTASYRRDLGRYADFLRQRSVADLAQVTSAQVAEFLAWSRDPA 64

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SSA + L+++R L ++AV +  VA +    V+ P+      +    + +     
Sbjct: 65  GMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVIAILE 124

Query: 185 F---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                          + +   E +  +G R S++    +  +     S +   K      
Sbjct: 125 ASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGDKERL 184

Query: 235 VELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAKATKAG 281
           V L    +  +    +     F+                  + +        +  A KAG
Sbjct: 185 VPLGSAALAAVEAYLVRGRPAFLAQRAGKATNALFLNARGARFSRQSAWASLRHAAAKAG 244

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           V    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 245 VQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYT 288


>gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 308

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 24/282 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH- 128
             I  +  +      LA N+  ++        +          +     +     +R   
Sbjct: 17  EAIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEA 76

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+A +  T  +  F+WA+R+  V  +P   +   K+     +  ++  ++   +   
Sbjct: 77  SRASTANRRRTVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPD 136

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
             +    + R   E +  SGLR S+        +  N   ++           V      
Sbjct: 137 VDTPLGLRDRAMIELMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKDRLVPFGAEA 196

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              L        T           F+      M    F    K  A +A +    S H +
Sbjct: 197 GDWLRRYLRDGRTALLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADIHAPLSPHTL 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 257 RHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297


>gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 93/279 (33%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---ESRK 127
           +  + +       L+++++ +++    +I  +  +       ++    +R          
Sbjct: 5   LERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELKVESWQQVDAGWVRQIASKGMRDG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+++R  F + V Q  +  NP   V  P++     +    ++M Q      
Sbjct: 65  LKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLDVNE 124

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR S+     ++++  +   ++          V       +
Sbjct: 125 DDPLAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSGLARE 184

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +A     +++    +++         +++             K  V  + + H +R   
Sbjct: 185 WVAKWLKLRDSIAQADEQALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 ATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 282


>gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568]
 gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399]
 gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196]
          Length = 305

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L +      
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  KA   +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
 gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA]
          Length = 311

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 92/301 (30%), Gaps = 25/301 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFD 110
               R+   +P   P +    I  +  +      LA N+  ++              +  
Sbjct: 2   RKAARKDAEAPSLPPQS-ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAERNKS 60

Query: 111 YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +     +     +R      SSA +  T  +  F+WA+R+  V+ +P   +   K+  
Sbjct: 61  IAETEDDDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPP 120

Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIF 222
              +  ++  ++         +    + R   E +  SGLR S+        +     + 
Sbjct: 121 RFPKTLSETQVEALIDAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVV 180

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIW 272
            +   K G    V         L        T           F+    + M    F   
Sbjct: 181 RVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYL 240

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  A +    S H +R   AT   + GA    +    G   +   + YT  A R R
Sbjct: 241 IKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RER 299

Query: 331 L 331
           L
Sbjct: 300 L 300


>gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
 gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex
           HEL-45]
          Length = 314

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 80/289 (27%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  ++     + +           G     KIT   +R+ 
Sbjct: 15  RDALQTWLTHQSALKGAAENTVTAYRGDVTEFLAFMTLHKGDTQGLGALAKITISDMRAW 74

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175
           +   +       S  + L++++  ++W   +E       L    PK + +  RP      
Sbjct: 75  MARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTRSPKFQKKLPRPLAEDAA 134

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + ++         ++       L   GLR S++                  K G  
Sbjct: 135 RALIDCVETQARAPWVAARDVAVLTMLWGCGLRISEALALKGGDAPLPSSLRILGKGGKE 194

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +       +             +             A   +        + G+  +
Sbjct: 195 RVVPVLPAARAAVEDYLAVCPHPQEPHAPLFRAIRGGALGARAVAQVMADARMQLGLPAT 254

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   DAG     +    G  ++   + YT   D  RL 
Sbjct: 255 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLM 302


>gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
 gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1]
          Length = 324

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRS---GVESRK 127
            IS + ++       A N+++++                  +T   K I +     +++ 
Sbjct: 8   WISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTVGRKDIEAYLVWCDAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L++++ L+++A  + +   NP + +  P +     +  +++++ Q      
Sbjct: 68  LAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDAAR 127

Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     +     E L  +G+R S+     V   + +   +    K G    V L D
Sbjct: 128 HSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMGKGGKERLVPLSD 187

Query: 240 GFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LA   + ++                 F        +   +F +  K  A  AGV+
Sbjct: 188 PSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAGVD 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT     GA    +    G   V   E YT   +          R+S
Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298

Query: 341 SVVDSDDP 348
            +V  + P
Sbjct: 299 ELVLDNHP 306


>gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis
           G4]
 gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4]
          Length = 320

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 86/275 (31%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133
           + +      L+ N+  ++        +                 +   + +R     +S+
Sbjct: 40  WLEH----GLSRNTLDAYRRDLMLFSQWLAATHHAALDSADEAMVTGYIAARSDGKATSS 95

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   + +P L +   K+        ++  ++        G+   
Sbjct: 96  NRRLSVFRRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIGTPLG 155

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 156 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 215

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 216 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSPHTLRHAFATH 275

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 276 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 309


>gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 331

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 100/304 (32%), Gaps = 31/304 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124
               +Y +S      + ++  ++++   + ++   +             +  +   +G+ 
Sbjct: 29  DWFLKYLRSE--RHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSLDVESYLTGLY 86

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K+  +S  Q ++++R  + + ++ E +  NP   V    +     R +   +MQ   S
Sbjct: 87  DKKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS 146

Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKT 226
              +G +          E    +G+R S+     ++ +             +   +    
Sbjct: 147 AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYLPFG 206

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
           +     +   L +    L+       +  FIN+  + + +            ++ +  N 
Sbjct: 207 KPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSSLTTNI 266

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   AT   + GA    +    G  ++   + YT    +  L     +       
Sbjct: 267 HPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYQKYFPRNNQ 325

Query: 345 SDDP 348
           S  P
Sbjct: 326 SLKP 329


>gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 297

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 25/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVES 125
            K L+ ++         ++ NS  S+    +++          +    I+ + +R  +  
Sbjct: 2   WKKLLKDFEHYLKIERGMSENSVHSYLFDMEKLREFVAIHQIEETPVNISAETLRMFIYE 61

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++    S  + +++++  FK+ + + Y    P  +++ PK   +     + E++    
Sbjct: 62  VGKELHARSQSRLISALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLEEIDAII 121

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQ 227
           +       EG + R   E L   GLR S+     +  L  +   I+              
Sbjct: 122 AGIDLSTEEGHRNRAIIETLYGCGLRVSELVNLHLSDLFFSEGFIRVLGKGNKQRLVPIS 181

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
           +              K + +     +  F+N   +++         K  A+  G+ K+  
Sbjct: 182 EYTQKEINNYILHQRKNIPIVKEFSDIVFLNRRGKQLTRAMIFTIIKQAASAIGLTKTIS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT   + GA    +    G +++   E YT 
Sbjct: 242 PHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTH 280


>gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 304

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 89/284 (31%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
                Y +S     L+  +  ++     Q++      G   +  +T   IR  +      
Sbjct: 13  EAFRVYLESE--RRLSPRTVRAYMGDVGQLLEWMQDQGIGGWDLLTPVRIRDFLAELWDR 70

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L++ R L+++ +R++ V  +P   V  PK++         E++    +  
Sbjct: 71  GLSRRSVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASP 130

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
              +    + R   E+L  +G+R  ++    V  +           K G    V      
Sbjct: 131 DPNTALGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRALIHGKGGKERYVLFGRSA 190

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATK-AGVNK-SAH 287
            + L                   +                         + AG +K S H
Sbjct: 191 ARALTRYLEVGWPALAGACPGPGDPVFLNYRGGALSDRSVRRIVDRHMARVAGYHKISPH 250

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   DAGA    +    G  ++   + YT    R RL
Sbjct: 251 VLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTT-RERL 293


>gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341]
 gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341]
          Length = 310

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 94/283 (33%), Gaps = 22/283 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--- 123
           L   +  +    H    L++ ++ +++   +   + + + G  ++ ++    +R  V   
Sbjct: 13  LAQPLERFYTYLHTEKGLSLYTQRNYKQQLETMARYLAQMGLANWSQLDAGWVRQLVVLG 72

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M Q  
Sbjct: 73  KRKGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLL 132

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
               +     + R   E +  SGLR ++     V+ +      I+          V    
Sbjct: 133 EVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAG 192

Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              + +      +     + +          +++             K  V  + S H +
Sbjct: 193 QAQEWVGKWLKLRSQLADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKL 252

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 253 RHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLA 294


>gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 95/280 (33%), Gaps = 22/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGV 123
              +S +       + + ++ +++     Q      R+ G+        ++    +RS +
Sbjct: 4   DHALSLFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFL 63

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----K 176
                      S  + L+++R  FK+  R+  +  NP   +  PK   +     +     
Sbjct: 64  GEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELD 123

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231
             ++        G++ ++  E L  SGLR S+      Q +      ++      ++   
Sbjct: 124 RLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIV 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            +T    +   + L M    +E   +N    +++           A +AG+  +   H +
Sbjct: 184 PLTNYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHML 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   D GA    +    G   +   + YT      
Sbjct: 244 RHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKER 283


>gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046]
          Length = 299

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 85/279 (30%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127
           + ++ +      + ++++   + S  ++        G     ++   H R  V      +
Sbjct: 9   LDQFIRYVQLEKNFSLHTVREYTSDLEEFFAFLHAEGIQKIAEVEYIHARLYVTKLYDEQ 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S  + ++S+R  F++  R++ +   P  S+  PK++      + +E++++      
Sbjct: 69  KARTSISRKISSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFEKNE 128

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  +     E L  +G+R S+     +  +  +   ++          +       
Sbjct: 129 GDDPIQIRNMALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERIIPFGQYAH 188

Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVR 290
             L           +  +  +                          A ++     H +R
Sbjct: 189 DALIRYIKQVRPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTKIYPHMLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G   +   + YT      
Sbjct: 249 HTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEA 287


>gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023]
          Length = 300

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
             L   +    H   + + ++  ++E+      R   +    +      +  +   + ++
Sbjct: 5   GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAITEYQQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
              E       + R+  E L  +G+R S+     +  L  +  +I    K      V   
Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184

Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 +                  ++  IN+    +             +KA +     
Sbjct: 185 AYAEDAITDYLSGRTELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162]
 gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317]
 gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162]
          Length = 361

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 95/343 (27%), Gaps = 41/343 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G R ++      T   A  +     +   E         T +K  +  + +     +L 
Sbjct: 5   DGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVKQYLDFWMEEYVKLNLK 64

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
            N+  ++       I    G      ++   +++ + +      S        + ++   
Sbjct: 65  YNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNAL 124

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             AV    +     +   +  +           +  + ED         EG    +    
Sbjct: 125 NMAVYPWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNI 184

Query: 199 LLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFM 242
             Y+G+R  + C      +  +                      + + +  T+ +    +
Sbjct: 185 GFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLL 244

Query: 243 KLLAMTPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHG 288
            +L      +    +   K  +                +      +  +    ++ + H 
Sbjct: 245 AILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHS 304

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +R   AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 305 LRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 347


>gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
 gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37]
          Length = 308

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 95/289 (32%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  ++++   A      + N+  ++ +     I           G     ++TT  +R+ 
Sbjct: 10  RTALADWLDHAKALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARVTTSDMRAW 69

Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   + T   P S  + L++++  ++W   +E       L+   PK + +  RP ++E  
Sbjct: 70  MAHLRRTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLPRPLSEEAA 129

Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +              +G++       L   GLR S++     +HL          K    
Sbjct: 130 RAMIDTVEIQSTTSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDSLRIVGKGNKE 189

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGVN-- 283
             V +     + +             +           +N    +   +    + G+   
Sbjct: 190 RVVPVLPVARRAVETYLSLCPFPPERDVALFRGARGGPLNPRLIAKVTEQARMQLGLPAT 249

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            + H +R   AT    AG     +    G  ++   + YT   D++ L 
Sbjct: 250 ATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYT-AVDQVHLM 297


>gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 327

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 85/283 (30%), Gaps = 33/283 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR------- 126
           Y          + ++  ++     + I      G     ++T   + S   +        
Sbjct: 20  YLDYLAVERGASPHTVAAYTRDLRRYITFLVANGVNSLDEVTLPVLESFARALEAGFGDY 79

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               PSSA + + S+R   ++A     V  NP   +   K         T E++Q     
Sbjct: 80  AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEA 139

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239
                     + R   EFL  +G R S++    V  +  +      +  G      L   
Sbjct: 140 ASATGDDNALRDRALLEFLYATGARISEAVNLAVDDIDLDEEIPLVRLFGKGRKERLSML 199

Query: 240 -------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                             LA     +   F+N   + ++        +A A +A +    
Sbjct: 200 GHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAVAQRAQITVPV 259

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   AT     GA    +    G  +V   + YTK  +
Sbjct: 260 GPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTN 302


>gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 293

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 90/266 (33%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  +  +  +  + +  +  ++     Q+     D D  K+    I   V+      +S+
Sbjct: 7   IDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSS 66

Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187
               + L+S+R  F + +  E +  NP   ++ PK   +  +    +++          +
Sbjct: 67  KTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNN 126

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP-------D 239
             ++    F+ L   G+R S+     ++ +  N  SI+          V          +
Sbjct: 127 IETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLN 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISA 298
            ++ +           FI+ + + +         +  A K A  +   H +R   AT   
Sbjct: 187 RWLNIRDTYSPKCNYLFISQNGEHLTNRSIQKRIEIFAKKYATKHIHPHMLRHSFATHVL 246

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           D+      +    G   +   + YT 
Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272


>gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 336

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 99/315 (31%), Gaps = 36/315 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD 110
               P+ E    P         ++  Y         LAV +  ++ +     +   G   
Sbjct: 3   ARGAPQPEGPGRPEAGGPPAADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFLGLEP 62

Query: 111 ------YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                   ++T + +R  +          S+  + L ++R LF++AVR+ ++  +P   +
Sbjct: 63  PVDAATLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASPAARL 122

Query: 162 ERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             P+ +    R +T E+ +               + R   E L   GLR  +     +  
Sbjct: 123 GTPRVRRRLPRVYTPEEARALLEAAGAGTGPAALRNRALLELLYGCGLRVGELSGLDLDD 182

Query: 217 LQNNIFSIKTQKTG-TIITVELPDGFMKLL------------------AMTPIGKETFFI 257
           +      ++    G     + L       L                     P  ++  F+
Sbjct: 183 VDWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQAVFL 242

Query: 258 NNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N    +++        +   A  A +    H +R   AT   D GA    +    G  ++
Sbjct: 243 NRWGGRLSPRSIQAIVRKAGAVVARLEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASL 302

Query: 317 DQAETYTKGADRIRL 331
              + YT    R RL
Sbjct: 303 AATQIYTH-VSRARL 316


>gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
 gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159]
          Length = 331

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 105/290 (36%), Gaps = 25/290 (8%)

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKH 118
            R +   ++  I E+         L+ N+  ++ +  +Q       + G  D+ ++ ++H
Sbjct: 11  RRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEH 70

Query: 119 IRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           + +    +  R++  ++A + L +++    + VR   +  NP   +  P+      R   
Sbjct: 71  LEAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIG 130

Query: 176 KEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229
            ++++Q           EG + R     L  +GLR S+     V+ +  +    I  +  
Sbjct: 131 PKEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPN 190

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK 279
           G    V L    ++ L          F           N+   ++    F +  K  A  
Sbjct: 191 GRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAA 250

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AG+   + H +R   A  +   G    +L    G  +    + Y +  +R
Sbjct: 251 AGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLER 300


>gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160]
 gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160]
          Length = 307

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y         L+ ++   +    +++ + +       +T   IR  V    
Sbjct: 1   MTAADPIAAYLSHLEHERRLSAHTLRGYTHELEELKQLAKGRPLESLTAVDIRGAVARAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMD 120

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                  EG +     E    SGLR ++     V+    +                   K
Sbjct: 121 NPAADSPEGLRDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    +  L      ++    ++           +++        K  A  A
Sbjct: 181 GNRRRVVPVGSKAVAALNAWLGVRDQMVRHDPHPLFLSTRGNRLSPNVVRERVKRAALAA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6]
 gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6]
          Length = 293

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+        G FD  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V ++P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDD 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + RL       +G+R S+      + +  +   +K         +     
Sbjct: 122 TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289
            +K L +  I             FF+  D +++         K   +  A + K S H +
Sbjct: 182 ELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G ++V   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESVATTEIYTHA 277


>gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 328

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 101/321 (31%), Gaps = 47/321 (14%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--GDFDYRKITT 116
               P+ K   L   I+ Y  +      +  N+  S+ S   Q+ +    G       + 
Sbjct: 2   KNKQPQNKKENL--YITYYIDALVSEKSSTQNTLESYRSDLHQLEKFLLEGGTTLVGASK 59

Query: 117 KHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKT 168
            +I+  V      +K+  SS  + +++++  +K       +  NP  +       PK   
Sbjct: 60  ANIKDYVNFLRTQKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSR 119

Query: 169 EGIRPWTKEDMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              +  + +++              +      +     + L  SG+R S+     +  + 
Sbjct: 120 PLPKYLSVQEIFLLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVL 179

Query: 219 N-------NIFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINND 260
           +         + I   K+     +   +  ++           LL         F  +  
Sbjct: 180 HLVNGNGKEGYIIIKGKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKP 239

Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            + +   +     K  A K  ++    S H +R   AT   ++GA    +    G   + 
Sbjct: 240 NKPITRQRVGQLIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLS 299

Query: 318 QAETYTKGADRI---RLGIKN 335
             + YT  A+     +L   +
Sbjct: 300 TTQIYTHIANEKLKDKLADSH 320


>gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31]
 gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31]
          Length = 308

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 40/306 (13%)

Query: 74  LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVES---RKH 128
            I  + +       A  N+  ++E              D    + + I +       R  
Sbjct: 8   WIDAFLEMMAVERAAARNTLTAYEKDLADARLFLASRGDLDGASAEAIEAYFADLGARGL 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183
           +P++A +  +++R  +++ + + +   +P   VE PK      +  +++           
Sbjct: 68  SPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLIAAAAA 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242
              ++G +     E L  SGLR S+     +  L  +    +   K G      L D   
Sbjct: 128 KDGAQGLRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLAPLNDAAR 187

Query: 243 KLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +                          F       ++ A + S   +  A  AG+++ 
Sbjct: 188 TAVKAYLEARPQFLPKGAPNGGVKDSPWLFPSRAKSGRLTARRVSQLLEDAAIAAGIDRQ 247

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   AT   + GA    +    G   +   + YT  A            ++ V
Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAG---------DHLAEV 298

Query: 343 VDSDDP 348
           V S  P
Sbjct: 299 VKSKHP 304


>gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1106a]
 gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           14]
 gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           9]
 gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           112]
 gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
 gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a]
 gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9]
 gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b]
          Length = 333

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +          +     +  L +   +  S                L+ N
Sbjct: 2   ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322


>gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
 gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238]
          Length = 313

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127
              I  + ++       A N+++++            D  +  +   H+       +++ 
Sbjct: 9   AHWIQAFLEAQAAELDAATNTQLAYARDLMDFSDWLADTHFAAVAQDHVEKYLIWCDAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L++++ LF++A  + +   NP + +  P R     +  +  ++    +   
Sbjct: 69  LAKATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEVDALLNAAR 128

Query: 188 EGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
           +  +  L      E L  +G+R ++     V   + +   +    K      V L     
Sbjct: 129 DAKKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPAR 188

Query: 243 KLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV---N 283
              A+    ++       K                  +    F    K  AT  GV    
Sbjct: 189 AATAVWLKTRDKAEDATFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLATAGGVTRSK 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H +R   AT   + GA    +    G   V   E YT   D  
Sbjct: 249 VTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDER 294


>gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 355

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R       +   + 
Sbjct: 55  IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVVRGHAAGLSA 114

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP   V  PKR+    +  + +D          G+
Sbjct: 115 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 174

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ Q + +                        
Sbjct: 175 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 234

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 235 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 294

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 295 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 341


>gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 291

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 16/284 (5%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
               P  E   +P+     L  LI  +       +   N+R ++ES     +   G    
Sbjct: 6   RAMPPTDEAQKAPQNSADNL--LIKTWL-----HNRGENTRRAYESDVRAFLAHVGKT-L 57

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            ++T   +++  +S     ++  + L +++ L  +    E +  +   +V  PK +    
Sbjct: 58  PEVTAPDLQNWFDSLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLH 117

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                ++  +         + R+    L  +GLR S+ C    + L+           G 
Sbjct: 118 ERILTQEQVRALIDGETDPRRRVMLRVLYATGLRISELCAVRWKDLKRRQQGGVAHVFGK 177

Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                           +  L +    +      +D   ++        K  A +AG+   
Sbjct: 178 GGKNRTVEIPAKVWKEIVALRVDSRPEAPMVPGHDGGPLSVDAVHRSVKRAAKRAGLPEQ 237

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            SAH +R   A+   D GA AH +    G  ++     Y+   +
Sbjct: 238 VSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHARE 281


>gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
 gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148]
          Length = 304

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 24/285 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR 126
           L     E+         L+ ++  +++       +   +       ++    IR+ V   
Sbjct: 5   LTDACKEFIDYLRDVRQLSPHTLENYQRDLASLQRYGEQIKKQTAAELDEADIRAWVSQL 64

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  SS  + L++ R  F +  R      NP  +V+ P++  +  +    + + ++ 
Sbjct: 65  HRRGLAGSSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDADQVDRYL 124

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
            F  +     +     E    SGLR ++     +  +         T K     TV +  
Sbjct: 125 MFEDDSPTALRDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTGKGNKTRTVPVGS 184

Query: 240 GFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +K +      +             F +N  Q+++        K +  KAG+  +   H
Sbjct: 185 AALKAIDKWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQGRKAGMRQDVHPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 245 MLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTH-LDFQHLA 288


>gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 17/254 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLTSMR 141
           + ++  ++      +I   G     +   +    +++ V +      SA    + L++ R
Sbjct: 2   SSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLSACR 61

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198
             + W V++ ++A+NP   +  PK   +  R    ++     Q  +    G + R   E 
Sbjct: 62  GFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252
              SGLR S+ C      L  +        K      V +    +  L           +
Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
           +  F       ++A    +  K  A + G+  +   H +R   A+   ++      +   
Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241

Query: 311 YGWKTVDQAETYTK 324
            G   +   + YT 
Sbjct: 242 LGHADITTTQIYTH 255


>gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
 gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93]
          Length = 311

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G  ++ ++    +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLSNWSQLDAAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 10/259 (3%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  + +      +L+  S  ++     QI     +     + +K + + +   K+   + 
Sbjct: 5   LEAFIEYISVIKALSRKSVDAYTCDLKQIELAL-NKPLISLDSKTLFNLLSEYKNK-RTL 62

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189
            + L+S+   F +  + ++V       V+  K      +  + + +Q   S        G
Sbjct: 63  NRKLSSVNAFFDFCYKNQFVDEK--KKVKFSKIPKLLPKFLSYQQIQNALSQVDRSSVLG 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +      FL  +G R S+      + ++     I+  K      V +       +    
Sbjct: 121 LRDYAMIIFLYATGARISECLALRREDIEGEWLHIRHAKGEKERIVPIAFVAKTAVDAYM 180

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
              +                 I       K  +  S H +R   AT     GA    +  
Sbjct: 181 NELKKTKEYVWSNYKGEKLSRISAYKITQKY-LGVSPHVLRHSYATALIAGGADLRVVQE 239

Query: 310 TYGWKTVDQAETYTKGADR 328
             G  ++   + YT    +
Sbjct: 240 LLGHSSLLTTQIYTHIQKQ 258


>gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 327

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126
              +I +Y     +    + N+  ++ +    ++   G     ++T  HIR         
Sbjct: 31  WDGIIEDYLDFLTFTKGRSENTVKAYRNDLHSLVD--GLTTVDQLTLHHIRRWQADALRA 88

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            H  SS  +  +++R   +W   +  V  +P   +  P+      R    +   +     
Sbjct: 89  GHARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNL 148

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G         +     EF+  +G+R S+ CR  +  L     ++    K      V  
Sbjct: 149 EVGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPF 208

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKA-TKAGV 282
            +     L             N                 +++  Q          T +G 
Sbjct: 209 GESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQATSTVSGG 268

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + S H +R  +AT   + GA    +    G  ++   + YT   D  RL
Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTH-VDSERL 316


>gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 250

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 16/236 (6%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D+       +   +     +P S  + L+++R  +K+   Q+  + NP  +   PK    
Sbjct: 3   DWTSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRA 62

Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +  ++ED++            G + R  FE L   GLR S+     ++ +      ++
Sbjct: 63  LPKDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLR 122

Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKA 275
                     V L       +                           M+   F    K 
Sbjct: 123 ITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKH 182

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A +A +    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 183 YALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 238


>gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 314

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 95/295 (32%), Gaps = 28/295 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI 119
            R   T +      Y         L+ N+   +       I      G      I    +
Sbjct: 8   GRPADTQIARAADSYLSYLSVERGLSENTIAGYRRDLSSYIAFLLDEGIDRLDGIDRADV 67

Query: 120 RSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            + V +++   ++ +S  + L++++   ++A+R+     +P  S+  P+R+       + 
Sbjct: 68  EAFVCAKRDGGYSSASIERALSAVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISI 127

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231
           E  +            G++ R   E L   GLR S+     V+ L  +        K   
Sbjct: 128 EQARALLDQPFAPTAAGARDRATLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALGKGSK 187

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKA 277
              V +       +     G  +    + ++              +++        +   
Sbjct: 188 ERLVPITGTAAAAMEAYMSGPRSELAAHARRASPSPAVLLNKNGGRLSRQAVHACCERWG 247

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AG++    H +R   AT     GA    L    G  ++   + YT   DR ++
Sbjct: 248 RIAGIDGLHPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTH-LDRAQI 301


>gi|307691932|ref|ZP_07634169.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 540

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/385 (11%), Positives = 107/385 (27%), Gaps = 43/385 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    +      ++R + G+               +       T                
Sbjct: 1   MARKRKSGTGTIRQR-KDGRWEGRAVVGYDDKGLPKTKNVLAKTKHECQKKLTKLMETVG 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
              +            +  + ++     L   ++ ++ES     II + G     ++T K
Sbjct: 60  STKSEKICADMPFGEWMDFWYQTYIKSGLRPATQNTYESTIYQHIIPQLGKIPLCQLTQK 119

Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++      K                   A       R     AV++  +  NP +  + 
Sbjct: 120 DLQQFYAHLKKEGRLVRTEQYGKGLSDRMARMCHAKCRAALDQAVQENLIRSNPAVGCKL 179

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P +++  ++  +++++Q+F           L F   L +GLR  +        L  +  +
Sbjct: 180 PPKRSREMQVLSRQELQRFLIQAKADGYFEL-FLLDLSTGLRRGELLALQWSDLDLDTGT 238

Query: 224 IKTQKTGTIITVELP--------------------DGFMKLLAMTPIGKETFFINNDKQK 263
           +   K    +  ++                     + F +               N    
Sbjct: 239 LSVTKQVYEVNGKMQLSVPKTKASIRKLVLPPAVVEVFREYRKTAKSRWLFPSPKNLDMP 298

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           +              +AG  +   H +R   AT++ + G     L A  G  +     + 
Sbjct: 299 LTPGSMLRRLHIILERAGCKQIRFHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDI 358

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           YT       +  + + +I   + ++
Sbjct: 359 YTHITSD--MLSEAAAKIDRGLGNE 381


>gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
 gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319]
          Length = 292

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 25/277 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK 127
           K L  +Y K     + +  +   +     +  R     D    +  + +  +R  +E   
Sbjct: 2   KDLFLDYLKLE--RNYSPATVKHYRDDLKEFERFFQGLDQQLSWESVDSDIVRRWMEYMM 59

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181
                 SS  + L+++R  +++A+R+  V  +P   ++ P+RK    +   + +M Q   
Sbjct: 60  DKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMDQLLD 119

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
               +   +    R        +G+R S+      + +         T K      +   
Sbjct: 120 ERMWTDSYKDVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRDKQRIIPFG 179

Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288
           D  +K L      ++         FF     +++   Q     K   +K      +S H 
Sbjct: 180 DELLKTLTAYQQQRDVETESESVAFFRTEKGKRVTDEQVRQMVKINLSKVSTLKKRSPHV 239

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   +  A    +    G +++   E YT  
Sbjct: 240 LRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHT 276


>gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 315

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 35/301 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSGVES 125
           + ++ +Y         L+ N+  S+     +++    +        + +        V  
Sbjct: 3   EQVLDDYINYLKIERGLSGNTCQSYRRDLKKLLIYLEENQNNLFQCQPVDLFSFLYSVNE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  S  ++  +++  F +   +     +P   +  PK +       ++  +    + 
Sbjct: 63  QGISARSIARYTAALKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLINH 122

Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                         +     E L  SGLR S+     +  +   +  ++ +        V
Sbjct: 123 RDDKESQAGMLLEIRDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERIV 182

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN----------------ATQFSIWFKAKA-- 277
            L +  +  L    +      +  +++                           K +A  
Sbjct: 183 PLSEPCLLALQKYLLEARNHLLRKNRKPTTAESNSLFLNARGGRLTRQGIWTILKNRAVK 242

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            KAG     H +R   AT   D GA    +    G   +   + YT    +R+R   + +
Sbjct: 243 NKAGAKIYPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKA 302

Query: 337 R 337
            
Sbjct: 303 H 303


>gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As]
          Length = 340

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 96/311 (30%), Gaps = 49/311 (15%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125
           TL+ L ++Y   A     LA  + +++    D ++      G      +  +   + + +
Sbjct: 17  TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAAPIESLHIRRWAAQLHA 76

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175
              +P +    L++ R  F+W  R  +VA NP   V  PK      +  +          
Sbjct: 77  GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 136

Query: 176 -----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQH 216
                           Q + F + G++     E L   GLR S+           A    
Sbjct: 137 TPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 196

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQK 263
             +   +  T K     +V +    +  L      +      +                +
Sbjct: 197 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDADADAQVALFLGARGAR 256

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +   +  +  +  A  AG++     H +R   A+    +      +    G  ++   + 
Sbjct: 257 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 316

Query: 322 YTKGADRIRLG 332
           YT+  D   L 
Sbjct: 317 YTR-LDFQHLA 326


>gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
 gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella
           violacea DSS12]
          Length = 296

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 89/283 (31%), Gaps = 19/283 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
             +L  ++  +         +  ++     +I     D     +TT  ++    S    H
Sbjct: 9   FDFLYEQHLTNLTLQGKRPATIDAYSRAVRRIAAFF-DCCPDNLTTDDLKRYFASLIDSH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +++ +   +  +N       P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYRYVLNHSWEWLNIVK----PPQVQRLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    V  +  Q     I+  K G    V LP   ++ L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLRVGDIDSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182

Query: 247 MTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
                          +                 K    +  ++KS   H +R   AT   
Sbjct: 183 YYWKTHHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
           + G     + +  G  +++    YT+      +  ++   +++
Sbjct: 243 EQGLDLRSVQSLLGHNSLNTTARYTRLTQITRKNTVEAINQLA 285


>gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK]
 gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK]
          Length = 304

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            L  EY +S     L+++++ +++     I  +   F+    T       + I S     
Sbjct: 13  QLFYEYIRSE--RELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 70

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS    L+++R  F + V+++ +  NP   V  P++     +    ++M Q  S  
Sbjct: 71  GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 130

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
            +     + R   E +  +GLR ++     V+ +  +   I+          V       
Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190

Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           + +A             +   F++    +++             K  V  + + H +R  
Sbjct: 191 EWVANWLKVRGSLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 250

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   ++      +    G   +   + YT   D   L 
Sbjct: 251 FATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 289


>gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
 gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila
           pecorum E58]
          Length = 312

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 40/293 (13%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---------------------DFDYRKITT 116
           +  S    S+++++  ++   F +                           D     +T 
Sbjct: 8   FLDSLKAKSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLTK 67

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             IR  +        +  +  + L++++   ++ ++ + +  +P  +++ PK   E   P
Sbjct: 68  DLIRLYISYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPSP 127

Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            + E     M         G + R   E    SGLR S+      Q +      I+    
Sbjct: 128 ISYEQVEILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFGK 187

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK 279
                 + +    ++ L       E   I  D Q         +++       F+     
Sbjct: 188 GKKERVLPVTPCAIRWLHHYLYHSERMSIQKDTQAFFLNRFGTRISPRSIDRKFQHYLQL 247

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +G+  N + H +R   AT   + G     + A  G  +++    YT+ + +++
Sbjct: 248 SGLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLK 300


>gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 303

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 93/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRS-GVESRKHT 129
           I  + +       L+  +   +  +   +     + G   ++ +    +R     SR+  
Sbjct: 12  IEAFLRYLRVERRLSPVTITHYRRHLATLAEMVLEMGVSQWQDLDPAKVRMLVTRSRRAG 71

Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             SA     L+S+R    W V Q  +++NP  +V  P  K    +    +++ Q  +   
Sbjct: 72  LQSANLALRLSSLRSFLDWQVIQGEISVNPSKTVSTPGTKRHLPKNIDVDEVNQLLNINF 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      QHL   +     + K      V L    ++
Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWVSGKGSKERKVPLGHTAVE 191

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      +E F   ++        ++++       F     + G+  +   H +R   A
Sbjct: 192 WLNRWLAMRELFEPEDNAVFVSKRGRRISTRNVQKRFAQWGIRQGMSSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G  ++   + YT 
Sbjct: 252 THILESSGDLRAVQELLGHASLSSTQIYTH 281


>gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
 gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C]
          Length = 311

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              +  + +        A N+  S+E   +           G  D      +   S +  
Sbjct: 6   AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    SS  + L+++R  +K+   +     +P   ++ PK+     +  + ED+ +    
Sbjct: 66  QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
                           +     E L  +G+R S+        L  N    I   K     
Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKS 285
            V L    ++ +       +    ++     +           F+   K+ A +AG+  +
Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 AIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 292


>gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945]
 gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136]
          Length = 305

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 89/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +  ++E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
 gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710]
          Length = 333

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 28/272 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++ E+  +      + ++  ++ S     +   G+   R ++ + I      R     
Sbjct: 20  KDILEEFIFALEAAGASEDTVRAYRSAIKDFLEFLGEKPLRNVSLRDIILWRNHRLKNGF 79

Query: 127 -------KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  K    + + + +  +   F W      +        +      + IR      
Sbjct: 80  SKAKTRDKKKWQTTLHYYSMFLNRFFNWLGLNIRIPRIRKPPRKIHVLNDDEIRKL---- 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236
                         +L    LL +GLR  +     V  +     +I     K      V 
Sbjct: 136 -----LKSIRDPLDKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVL 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293
           +    ++L+      K     +     +  +      K    +AG+       H +R   
Sbjct: 191 VTSRTIELIRSWIELKNLGKEDRLI-PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT +   G +   L    G   +   + Y   
Sbjct: 250 ATQALKKGLSLPYLQRLLGHSDIKTTQVYLHV 281


>gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 317

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 90/298 (30%), Gaps = 42/298 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV--- 123
            +  I ++         L+  +  ++ +   +  +   D        +TT+ +   +   
Sbjct: 4   FERTIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLADQGVGGIAAVTTQDVERYIVFL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    +  S  + L S+  L ++AV +  V  +    V+ PK  +      T +++ +  
Sbjct: 64  DESGESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLL 123

Query: 184 SFWSEG------------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                                    + +   EF+   G R S++C A +  +  +    +
Sbjct: 124 DSIPVSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIAR 183

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFS 270
              K      V +     + +            +  K  +              +     
Sbjct: 184 LMGKGSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVW 243

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +    +A ++K    H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 244 EIIRGAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHIS 301


>gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 304

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TP 130
              Y  +     ++  +  ++     ++      + D+ ++  + +++ +        +P
Sbjct: 16  FERYLTTE--RQVSAYTVRNYLFELKRVEAVFAANDDWLELKHESLQAIIAKLHRKGLSP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L+S++  F + +R++ +++NP L++  PK+     +    + +       +   
Sbjct: 74  RSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVTHLLEIDANDP 133

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     V  ++ +        K      V +    +  ++
Sbjct: 134 LSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKVMGKGSKERIVPIGKLALTAIS 193

Query: 247 MTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                K      +D   +                          V    H +R   AT  
Sbjct: 194 QWLDIKRDIPCEDDALFVTAKGRRLAHRSIQARLAKWGQEQALSVKVHPHKLRHSFATHM 253

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++ A    +    G   +   + YT   D   L 
Sbjct: 254 LESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287


>gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
 gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 24/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124
           L+  +  +         LA NS   +     + +      G   + ++    I++ +   
Sbjct: 4   LEPALDLFVAHVRVEKGLAENSVEGYLRDLRRYVEHLDALGIGAWERVGRIEIQAHLGEL 63

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  +P S  + L+++R L +    ++   ++    ++ P+   +     + +++ +  
Sbjct: 64  VRRGLSPRSQARALSAIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARLL 123

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                  + G + R   E L  +GLR S+    G+  +      +  +        V + 
Sbjct: 124 ASPDPRSAAGLRDRAMLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIVPVG 183

Query: 239 DGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               + +                 +  F++    ++    F+      A  AG+ +  S 
Sbjct: 184 APAAEAVKAYLAVGRERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRRISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    + A  G   V   + YT  
Sbjct: 244 HKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHV 282


>gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium
           SS3/4]
          Length = 284

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTPSSAIQF 136
                + N+ +S++    ++       G  D  K+T   + S +   E      S+  + 
Sbjct: 3   EEKHASKNTTLSYQRDLLKMADYLEENGITDCGKVTKTALNSYILFLEKEGKAASTVSRA 62

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192
           L S R  F W  ++  +  +P  S+  PK + +     T +++ +          +  + 
Sbjct: 63  LASTRSFFGWLFKEGRIRRDPADSMHAPKIEKKVPVILTVDEVTKLLEQPSGANPKEIRD 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           +   E L  +G+R ++     +  +  +I  I  +       +         LA      
Sbjct: 123 KAMLELLYATGIRVTELVNLKLSDVNMSIGFITCRDEHKERMIPFGHAAKDALAKYLESA 182

Query: 253 ETFF----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
              F           N   + M+   F    K    +AG+  + + H +R   A      
Sbjct: 183 SETFLKGTRSELLFTNYSGRAMSRQGFWKIIKYYGERAGIEEDITPHTLRHSFAAHLLSN 242

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           GA    +    G   +   + YT  A
Sbjct: 243 GADMRAVQTMMGHSDLASTQMYTAYA 268


>gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
 gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8]
          Length = 293

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 84/278 (30%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           +  Y +   +   L+  + I++      +   +   D + I+   IR  +        + 
Sbjct: 4   LDAYIQHLTFERGLSQLTCINYRRDISLLESLAEAADLQTISHAQIRRFIGKLHARELSS 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L++ R  + + +       NP   +  PK      +  + +    F      G+
Sbjct: 64  KSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVDIQGGGT 123

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236
              +     E    SGLR ++     +  L             N   I    +     ++
Sbjct: 124 LDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRIVPLGSHAAEAMQ 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
                  L+      K+  FI    +++         KA A K G +     H +R   A
Sbjct: 184 KWLQARALIPTAETNKQAVFITQQGKRITPRAVQYRVKAWAIKQGADSNLHPHMLRHSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    +      +    G   +   + YT   D   L 
Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQVYTH-LDFQHLA 280


>gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 87/287 (30%), Gaps = 30/287 (10%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              I  +         +A  +  S+    + + R       G     +            
Sbjct: 38  AAAIERFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLLGIDRSVLFDYLRWRTE 97

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +++P S  + L+++R  +   +R    + +P   ++ P+      +  T+  +    + 
Sbjct: 98  ARYSPRSNARLLSTLRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQIDALLAA 157

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E +  +GLR S+        +      ++          V L + 
Sbjct: 158 PDIQTPLGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKERLVPLGEE 217

Query: 241 FMKLLAMTPIGKETFFINND----------------KQKMNATQFSIWFKAKATKAGVN- 283
               L            ++                 +Q  +   F    K  A  AG++ 
Sbjct: 218 SQHWLERYLHEARPLLADHKAVAAVDGQVPLFIDAARQPPSRQHFWALVKRYAAVAGIDP 277

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              S HG+R   AT   + GA    L    G  ++   + YT  A +
Sbjct: 278 ATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 324


>gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 300

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 29/275 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHTPS- 131
            Y ++      +  +  ++    +Q +   G  D R    +ITT  IR  +  R  T   
Sbjct: 7   RYLEAE--RRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREWILYRTETGRV 64

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------QQF 182
              S  + ++S+R LF+W +R   V  +    +   +          +  M       + 
Sbjct: 65  SAASMNREISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMNGIVSECEC 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
            S      +  L    L   GLR ++           +  S++ +        V + +  
Sbjct: 125 DSEDFVRERNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGDKERIVPMLEFV 184

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + +       E   I           +  ++++ T      + +  +AGV   KS H +
Sbjct: 185 REKILHYIGLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRAGVQGKKSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   ++GA   E+    G  ++   + YT 
Sbjct: 245 RHTFATHLLNSGADMREIQELLGHASLQATQVYTH 279


>gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia K279a]
 gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 325

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 37/296 (12%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128
           I  +  +      LA  +  S+    + + R     D     I    +   +  R     
Sbjct: 28  IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGW 87

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P S  + L+++R  F   VR+     +P   ++ PK      +   +  +    +    
Sbjct: 88  SPRSNARLLSALRAFFADGVRRGERGEDPSALLDPPKLPRLLPKALAERQIDALLAVPDI 147

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E +  +GLR S+        +      ++          V L +    
Sbjct: 148 DSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQH 207

Query: 244 LLAMTPIG-----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
            L                       +   F+      +    F    K  A  AG++   
Sbjct: 208 WLERYLQASRPLLVGKGKVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPAR 267

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            S HG+R   AT   + GA    L    G  ++   + YT       +  ++ +++
Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT------LVAREHLQKL 317


>gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
 gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36]
          Length = 324

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRS---GVESRK 127
            IS + ++       A N+++++                  +T   K I +     +++ 
Sbjct: 8   WISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTVGRKDIEAYLVWCDAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L++++ L+++A  + + + NP + +  P +     +  +++++ Q      
Sbjct: 68  LAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDAAR 127

Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                     +     E L  +G+R S+     V   + +   +    K G    V L D
Sbjct: 128 HSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMGKGGKERLVPLSD 187

Query: 240 GFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LA   + +                  F        +   +F +  K  A  AGV+
Sbjct: 188 PSREALAAWLVQRDRTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAGVD 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT     GA    +    G   V   E YT   +          R+S
Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298

Query: 341 SVVDSDDP 348
            +V  + P
Sbjct: 299 ELVLENHP 306


>gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
 gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM
           43043]
          Length = 311

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 30/291 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKH 118
           +P+ + T L   +  +          + N+  S+E    +               ++ + 
Sbjct: 2   APKPRTTQLDREVRGWLDHVRIEKGASDNTLKSYERDLRKYREHLHHRGIERAAAVSERD 61

Query: 119 IRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   + S +      SSA + L ++R   ++   +  VA +P  +V  P   +   +   
Sbjct: 62  VTDFLASLRERGLAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLPKAIP 121

Query: 176 KEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------- 219
            E +++  +  S G      + R   E L   G R S++    V  L             
Sbjct: 122 IEAVERLLAASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVAGEVGLVRL 181

Query: 220 -----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                    +   +                LA    G    F+N   ++++        +
Sbjct: 182 LGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSRQSAWSVVQ 241

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A +AG+  + S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 242 RAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 292


>gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 316

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 90/265 (33%), Gaps = 27/265 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSAIQF 136
            SL+ ++ +S+E      IR + D        + ++    +R            +S  ++
Sbjct: 36  RSLSESTLMSYERDLRHFIRFAADAGISA--PEQVQKHHMARYWLTLRQEGRKNASLSRY 93

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP 192
             S+R  F++ + ++ V  +P   ++ PK  +   R  T   ++            G + 
Sbjct: 94  RVSLRAFFRYLMDKQRVTADPTADMDAPKPDSPPPRILTAVQVELLLASPDPAEPSGLRD 153

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-----------LPDGF 241
               E +  +G+R S+     ++H+  ++  I+         V                 
Sbjct: 154 SAILETMYATGIRVSELIALDLEHVHVSLGFIRCSANAKERIVPIGRAASASLEAYLQSG 213

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            + L      ++  FIN   ++M         K  A  A +  + + H +R   A    +
Sbjct: 214 RERLLRDNSEEQAVFINRRGERMTRQGLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLE 273

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +   + Y  
Sbjct: 274 NGADVRAVQEMMGHAGLAATQKYVH 298


>gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
 gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13]
          Length = 317

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           I  Y  +      L+  + I++    +++I  +       +++  IR            P
Sbjct: 2   IGRYLDTLTGQRQLSDQTVINYRRDLEELIELANQTKLATLSSSDIRRFTSKLHAKGLNP 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
            S  + L++ R  ++W + +   + NP   +  PK+     +  + +D  +  +  SE  
Sbjct: 62  RSISRKLSAWRGFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVASTSEKE 121

Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
                          FE L  SGLR S+     +  +++  +   +              
Sbjct: 122 AVEQDRATLLCNHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLEEKEVTVTGK 181

Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                 V + D  +  +                       FIN+  ++++     +  K+
Sbjct: 182 GNKTRIVPIGDAAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISPRTVQLRLKS 241

Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A   G+  S   H +R   A+    +      +    G  ++   + YT   D  RL 
Sbjct: 242 HANALGLPVSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQRLA 299


>gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia K279a]
 gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a]
          Length = 298

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 84/275 (30%), Gaps = 17/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130
            +  + +       ++ ++  ++    D +   +         +    +R  V       
Sbjct: 3   AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGVAVEALDADALRQFVADEHRRG 62

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184
            SA    + L++ R  + W ++   + ++P  +++ P+      +    ++  Q    + 
Sbjct: 63  LSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+ C    + L  +        K      V       +
Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQRRVPFGRPARE 182

Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            L            +         ++     I  +  A + G+  +   H +R   A+  
Sbjct: 183 ALQAWRAESGGGPASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276


>gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 315

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 91/286 (31%), Gaps = 30/286 (10%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVES 125
           LI  + ++     + +VN+  ++               +   + D   +    +      
Sbjct: 17  LIDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETRAKTLTNCDMDDLR--GVIFWWHQ 74

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R   P S  + L+++R    WAV       NP   ++ P       +  ++ ++ Q    
Sbjct: 75  RDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLKM 134

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  S   +     E L  +GLR S+     V   + N  +I  +  G    +    
Sbjct: 135 AKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERLVPLG 194

Query: 240 GFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
              +L A+  I               F       M+  Q +   K  A  A +     S 
Sbjct: 195 ETARLAAVRWIECRDSNPAFVQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIEVGRVSP 254

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   + GA    L +  G   +   + YT  +   RL 
Sbjct: 255 HKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYT-SSRPERLA 299


>gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498]
          Length = 307

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 101/310 (32%), Gaps = 42/310 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
             +I  + +        +V + ++++        K         + +     ++ S ++ 
Sbjct: 4   DAVIDRFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
                +S  + L+++R  F++   +     +P   ++ P++     +  +++ M +    
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLLDF 123

Query: 184 ------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230
                         +    + ++  E L  +GLR S+     VQ ++     I    K  
Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281
               V L +   ++L      ++            A            +   K  A +AG
Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +   N S H +R   A+     GA    +    G + +   + YT   +          R
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLE---------AR 294

Query: 339 ISSVVDSDDP 348
           +  +V+   P
Sbjct: 295 LHRLVNEHHP 304


>gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36]
 gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36]
          Length = 333

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 86/284 (30%), Gaps = 27/284 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRK 127
           I  + +       L++++  ++  +      +       +   +    +R          
Sbjct: 35  IERFLRYITSERQLSLHTVRNYRRHLILFAEQMLTLPITEWRALDASQVRKLATLNHKLG 94

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
            +P S    L+++R    + V Q  +  NP   V  P++     +    +++ Q      
Sbjct: 95  LSPRSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPKNLDVDEINQLLSVSN 154

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                      + +   E +  +GLR  +     +  ++    +++          + + 
Sbjct: 155 AVESDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKLREKTMRVIGKGNKQRQLPIG 214

Query: 239 DGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
              +  L              +   F++  +++++             +  +  + + H 
Sbjct: 215 SIAITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSVQSRMAKWGQQQTLTSHVNPHK 274

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 275 LRHSFATHMLESSGDLRAVQELLGHANISTTQIYT-SLDFQHLA 317


>gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 313

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 91/283 (32%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  + S Y          A ++  S+     +        G     ++ + H+ + +   
Sbjct: 11  LSSVFSGYLNHLAVERGTARSTLDSYARDLRRYADHLLESGVRALGEVRSTHLSAFLAEL 70

Query: 127 KHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +           SSA + L + R L ++A     V ++    +  P       +     D
Sbjct: 71  REGGPERPALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSD 130

Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           + +           G + R   E L  SG R S++    V  +     +I    K G   
Sbjct: 131 VLRLLDNTGGEDVRGLRDRALLELLYSSGARISEAVGLDVDDVDEAERTILLDGKGGRQR 190

Query: 234 TVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV 282
            V +    +  L    +                F+N+   +++        K+ A +AG+
Sbjct: 191 LVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAAERAGI 250

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 251 GSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 293


>gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae 642]
          Length = 299

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 89/296 (30%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++           +   I+      +    + 
Sbjct: 5   LDAYCVHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +            +  F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 QALEVWLPLRALTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
 gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1]
          Length = 328

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              A N+  ++    D  +     G  D  +   + +R+ + S +      SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAEGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   E           
Sbjct: 87  IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L D   + 
Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +              F   ++   +    F+   K  A  A +     S H +R   A+ 
Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAADLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   +   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299


>gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC
 gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii]
          Length = 295

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 108/298 (36%), Gaps = 27/298 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124
            TL+     Y K+    S +  + ++++       +  +++G F  + +I+ + +   + 
Sbjct: 1   MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L+S++  ++   R+  V  +P ++++  + K +    + ++++ Q 
Sbjct: 59  ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
               ++G     + R        +G+R S+     ++ L      I    K      V  
Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                K L                  E  F+N   + +++   +   +    KAG+    
Sbjct: 179 DQESKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             H +R   AT   + GA    +    G + +   + YT  + +  L  +  +     
Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295


>gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01]
 gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03]
 gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07]
 gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22]
 gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26]
 gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32]
 gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12]
          Length = 306

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 28/295 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130
           +  + +      + A N+  ++E+                +  TT+ +++ + +   +  
Sbjct: 6   VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L+ +R  + + +R+   A NP   ++ PK  T   R  ++ ++    +  +E
Sbjct: 66  ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAE 125

Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                      G   + A E L  SGLR S+      + +  +    +   K G    V 
Sbjct: 126 PAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185

Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
           L D   +       +         F   +  + M    F       A +A ++    S H
Sbjct: 186 LSDSAREAAQALLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341
            +R   AT     GA    L    G   +   + YT    +R++  ++    +++
Sbjct: 246 VLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
 gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989]
          Length = 300

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 73/280 (26%), Gaps = 21/280 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESR 126
           LK    +Y          +  +  S+    D  +    D    K   I+   I + ++  
Sbjct: 3   LKDAFEDYHLYLSVVQRKSKKTVQSYLHDIDVYLDFLKDRKISKCENISVLDIEAFLDFY 62

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQ 181
              H  SS  + + S+               +  L +   K         + +    +  
Sbjct: 63  AEDHVASSLNRMIASIHSFHLQISTMHPEIKDVSLLIHGMKSSKHLPVYLSVDEVKKVFS 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVE 236
                      +     L   GLR S+ C   +  +      +K      ++    I+  
Sbjct: 123 SFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHLTEQILKVKGKGDKERIIPISSY 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV--NKSAHGV 289
                   L       +   ++                 +  K K  +  +    SAH  
Sbjct: 183 CVSQMKYYLDSIRFVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKVNELNLNPKISAHSF 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   D  A    +    G   +   + YT   D+ 
Sbjct: 243 RHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKR 282


>gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC
           23344]
 gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10229]
 gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           668]
 gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC
           10247]
 gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
 gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           7894]
 gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           NCTC 13177]
 gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344]
 gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1]
 gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229]
 gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668]
 gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247]
 gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH]
 gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU]
 gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280]
 gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399]
 gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576]
 gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346]
 gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4]
 gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20]
          Length = 310

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I +Y  +      L+ ++  ++    D++ R +       +T   +R   +   +   + 
Sbjct: 10  IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAVDMRSAVARAHAGGLSA 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 70  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     ++++++  +                        
Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 296


>gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 349

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 122/347 (35%), Gaps = 25/347 (7%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            ++R   G    Y++    G R+    P    F+ +Y +A+      ++ +         
Sbjct: 11  RRKRLADGTWRTYWYAWKGGPRLE-GEPGTPEFMASYNTAVARRVETKQGV--------- 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
           L  LI  ++ S  +      +R  +  +   I ++ GDF    +T +  R    + +   
Sbjct: 61  LLSLIQGFQASDSFLGKEPRTRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRL 120

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +   A    + +  +  WA+ +  +  NPC    R  R +   + WT +D ++F + 
Sbjct: 121 AVRSRRQADYAWSVLARILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLAS 180

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   L     L++G R  D  R            +K  KTG  + + +       L
Sbjct: 181 APA--HLHLPLILALWTGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAAL 238

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
              P       +N++ +      F   +      AG+   + H +R  + +  A AG + 
Sbjct: 239 DAAPRVSPVILVNSEGRPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSE 298

Query: 305 HELMATYGWK--TVDQA--ETYTKGADRIRLGIKNSRRISSVVDSDD 347
            E+    G     V       Y        L +   R++ + ++S D
Sbjct: 299 AEIATLTGHSLRDVRSILDAHYLNR--DPALALAAVRKLETRMNSPD 343


>gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
 gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 92/310 (29%), Gaps = 53/310 (17%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------------------------ 108
           L+  + +       LA N+  +++S                                   
Sbjct: 37  LLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGAG 96

Query: 109 ----FDYRKIT---TKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                   +I     +H+R+        K  P S  + ++++R  F++   ++ +  +P 
Sbjct: 97  LASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPA 156

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             ++ PK      +  +  +++Q              +       L  +G+R S+  +  
Sbjct: 157 ALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKLP 216

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQK 263
           V  +          K      V   +   + +A+                  F+      
Sbjct: 217 VAAVNQAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGTA 276

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M   +F    +  A + G+    S H +R   AT   + GA    +    G   +   + 
Sbjct: 277 MTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQI 336

Query: 322 YTKGADRIRL 331
           YT   D  RL
Sbjct: 337 YTH-VDTNRL 345


>gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
 gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109]
          Length = 310

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L   +  Y         LA ++  ++     + +      G  +  +IT +     V   
Sbjct: 5   LTAALEGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVL 64

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         +P+SA + + ++R   ++         +    +  P +     +    +D
Sbjct: 65  RTGSDGRAVLSPASAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIGVDD 124

Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223
           + +       G      + R   E +  +G R S++    V  L                
Sbjct: 125 VARLLDAAGLGDGPVPLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAVRLLGKGG 184

Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               +                    LA    G    F+N    +++        +  A +
Sbjct: 185 KERVVPVGSYAAQAVDAYLVRGRPALAAAGRGTPAIFLNTRGARLSRQSAWAVLRTAAER 244

Query: 280 AGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           AG+   + S H +R   AT     GA    +    G  +V   + YT
Sbjct: 245 AGLAADHLSPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYT 291


>gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
 gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001]
          Length = 332

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 86/273 (31%), Gaps = 28/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              A N+  ++    D  +        D  +     +R+ + S +      SSA + L+ 
Sbjct: 27  RGAAANTLAAYRRDLDDYLGYLAQQGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188
           +R   ++   + Y   +P   V  P+R     +  +  ++ +  +   +           
Sbjct: 87  IRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAEVDRLLATARDRVEAAGDDRTE 146

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               ++     E L  +GLR S+              + +   K G    V L +   + 
Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLVVKGKGGRERLVPLTELAREA 206

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
           +              F  +++   +    F+   K  A  AG+     S H +R   A+ 
Sbjct: 207 MRAHVAHLTADGAWLFPADSESGHLTRQAFARDLKVAAAAAGLRTDRVSPHVLRHAFASH 266

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   V   + YT   D  
Sbjct: 267 LLQNGADLRIVQELLGHADVSTTQIYTHVLDER 299


>gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
 gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673]
          Length = 282

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 24/279 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESR 126
            +  +Y +      ++ N+ +S+     Q+    G+    +   +T   + S    +E  
Sbjct: 6   DIFIKYLQ--EVKKMSRNTVLSYHRDLLQMASYMGERGITEAGKVTKTSLTSYILFMEKE 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
               ++  + L SM+  F +   +  +  NP   V  PK + +     + E++       
Sbjct: 64  GKATTTISRMLASMKAFFHYEFSEGKIRRNPAELVHAPKIEKKAPVILSVEEVTSLLKQP 123

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               S+  + +   E L  +G+R S+     +  +  NI  I  +  G   T+       
Sbjct: 124 SGRSSKEIRDKAMLELLYATGIRVSELTSLKLTDINMNIGFITCRDGGKDRTIPFSRVAK 183

Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
             +                 +  F+N +  +M+   F    K    KAG+  + + H +R
Sbjct: 184 GAMEDYIENARSELTRKKESDWLFVNCNGGQMSRQGFWKIIKFYGDKAGIESDITPHTLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A      GA    +    G   V   + Y     + 
Sbjct: 244 HSFAAHLIGGGADMKAVQVILGHSDVATTQMYAAYVGKR 282


>gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 293

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  +  +  +  + +  +  ++     Q+     D D  K+    I   V+      +S+
Sbjct: 7   IDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSS 66

Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187
               + L+S+R  F + +  E +  NP   ++ PK   +  +    +++          +
Sbjct: 67  KTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNN 126

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
             ++    F+ L   G+R S+     ++ +  N  SI+          V      +  L 
Sbjct: 127 IETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLN 186

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISA 298
                ++T+    +   ++     +  ++   +  +        +   H +R   AT   
Sbjct: 187 RWLNTRDTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVL 246

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           D+      +    G   +   + YT 
Sbjct: 247 DSSKDLLAVKDLLGHADISSTQIYTH 272


>gi|147669488|ref|YP_001214306.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146270436|gb|ABQ17428.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 368

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 115/359 (32%), Gaps = 50/359 (13%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           T+ GK  Y        R    ++ +  +             L     + +     + + T
Sbjct: 6   TKRGKDSYSIVISTGERDPETKKYKQHWETVRGTKKDAEKRLAELLNQIDKGLYIKPEKT 65

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--- 125
           TL   +  + K   W +LA  +   +E    + II   G     ++  +HI+    +   
Sbjct: 66  TLAEYLERWLKDYVWPNLAPRTAEGYEHIIRRYIIPGLGKIQLAQLKPEHIQKYYANQLS 125

Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +P +       +    K AV+ E +  NP  +++ P+ +   +   T+E +
Sbjct: 126 IGGDKGIGLSPRTVRHHHMCLHSALKTAVKWELLIRNPLDAIDPPRCQKHEMHTLTEEAV 185

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------------- 223
            +     +E +     F   L++GLR S+        +   +                  
Sbjct: 186 HKVLEIANE-TPYFTLFYLALFTGLRRSELLALKWSAVDLIMCQLSVSRSLHVLSGGEII 244

Query: 224 -IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQ 268
             +T+   +  +V L    +++L      ++                F N D + +    
Sbjct: 245 TRQTKTARSTRSVALSPSTVQVLKDHRDKQQAFKILAGSHLNNDDFIFTNIDGKPLLPNT 304

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            +  +     K G+N    H  R   A++    G     +    G  ++    +TY+  
Sbjct: 305 ITHNWIKLIRKTGLNGIRLHDARHTHASLMLKQGVHPKIVQERLGHSSIQVTLDTYSHV 363


>gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 87/289 (30%), Gaps = 24/289 (8%)

Query: 77  EYRKSAHWGSL-AVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128
           ++     +  L + N+  ++ S          +        +  K+T   +     S+  
Sbjct: 10  DFLDYLQFSKLCSNNTIRAYRSDLISWFEFLKNSKNNLNELEITKLTYDWLIEDQNSKLL 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + +++++    +  +   +     L+++ PK+     +     D+    +    
Sbjct: 70  KKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSDVADVINKNFT 129

Query: 189 GSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
            S        L    L  +G+R S+     ++ +  +   I+          V   +   
Sbjct: 130 SSNFYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGNKERVVFFTNFTK 189

Query: 243 KLLAMTPIGKETFFINNDKQKMNA-------TQFSIWF-KAKATKAGVNKSAHGVRKFSA 294
             L      +           ++                    T+ G + + H +R   A
Sbjct: 190 NFLKQYITERLKLKTKCRYLFISRLKSRISERMIRYIVSNTWKTQTGKSITPHQLRHSLA 249

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISS 341
           T   + G     +    G + ++    Y K  ++   +   K+  ++  
Sbjct: 250 TFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEYYKSLDKLEK 298


>gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
 gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1]
          Length = 309

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 30/301 (9%)

Query: 65  RKKPTTLK----WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF------DYRK 113
             +P TL       I  +  +      L+ N+  ++        +  G+           
Sbjct: 3   TSRPMTLSPGSQAAIDAFVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDA 62

Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               H+++   +R      +SA + LT +R  F+WA+R+  +AI+P + ++  ++     
Sbjct: 63  TMEHHLQAYFAARHAQTRATSANRRLTVLRRYFQWALRERRIAIDPTVRLQAARQPLRVP 122

Query: 172 RPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           +  +   ++            G + R   E +  SGLR ++       H       ++  
Sbjct: 123 KTLSAAQVEALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLRVM 182

Query: 228 KT-GTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAK 276
                   V   +   + L                 +  F+      M    F +  K  
Sbjct: 183 GKGSKERLVPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKH 242

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           A  AG+    S H +R   AT   + GA    +    G   +     YT  A      + 
Sbjct: 243 AQSAGIHVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALH 302

Query: 335 N 335
            
Sbjct: 303 A 303


>gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040]
 gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040]
          Length = 311

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+  ++     + +           G    R+ITT  +R+ 
Sbjct: 14  RDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGLGALRQITTADMRAW 73

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + S + + + A    + L++++  + W  ++E       LS   PK + +  RP  ++  
Sbjct: 74  MASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPKFQKKLPRPLDQDAA 133

Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++     +            K G  
Sbjct: 134 RAMIDTVELQSQKDWVSARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + +             +            +A            + G+  +
Sbjct: 194 RVVPVLPAAQQAVERYLALCPHPKEAHLPLFRGVRGGALHARMIQGVMAGARRQLGLPAT 253

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D   L 
Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 301


>gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
 gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3]
          Length = 311

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 95/285 (33%), Gaps = 23/285 (8%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES 125
           +L   I+ + +       L+ ++  ++    D                +   H+R  +  
Sbjct: 10  SLAQRIAAFLEYLRSVRRLSSHTVTAYRRDLDSFEDFCQQHSVTGCSDVQESHVRQWLAQ 69

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              T   P+S  + L+++R  F+W         NP L+V+ P+++ +       + +  +
Sbjct: 70  GHRTGLAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTLEADQVGVY 129

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
                      +     E L  SGLR ++     +  +  +      T K     TV + 
Sbjct: 130 LRADDNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVG 189

Query: 239 DGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              ++ +      + T          F++   ++++        +  A + G+  +   H
Sbjct: 190 RIAIEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVHPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 250 MLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTH-LDFQHLA 293


>gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
 gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus']
          Length = 311

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 35/301 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSG 122
               +++++K        +  +   +E+   Q+ R          +F    +    I   
Sbjct: 8   FLEAVNKFKKYLDVEKGYSKLTIKEYENDLQQLYRYLKEELDFPEEFKPEDVDRLDIAEF 67

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +        +   +  + L ++R  +K+ +R   +  NP  +++  K  T+    + K  
Sbjct: 68  LADAVIVNDNKAITRNRKLFAIRSFYKYLLRYGVIEKNPAEAIDSSKTDTKLEPIYLKLK 127

Query: 179 MQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
             Q      +        +     +  LY+GLR S+       ++     SIK       
Sbjct: 128 EAQKFIAAIDDKDNINRLRDIAITKLFLYAGLRISELVNLDFDNVDFEDGSIKFYGKGSK 187

Query: 232 IITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              V L +   + L                 ++  F++   ++++     ++ K  A KA
Sbjct: 188 ERYVPLHNDVTEALKRYLKERNTIKIKDQDARQAIFLSRHGRRISPRTIQLFVKKYAKKA 247

Query: 281 GV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
           G+      + H +R   A++          L    G   +   + YT    +  +  I  
Sbjct: 248 GLSRADKITPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307

Query: 336 S 336
            
Sbjct: 308 M 308


>gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 328

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + IT  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNVLNQIEKIEDLENIDVSSFEIEKLKTITLSNL 80

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                       ++P S  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNSPYSRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T E+ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLEESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L     + +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans
           ATCC 17616]
 gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616]
 gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 306

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +  +   L+ ++  ++    D++ + +       +    IR   +   +   + 
Sbjct: 6   IAAYLSNLKYVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
           +EG +     E    SGLR ++     V + Q   +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292


>gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC
           19707]
 gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
 gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707]
 gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27]
          Length = 300

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 88/280 (31%), Gaps = 22/280 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVESR 126
            I ++     +   L+  + +S+     +      ++G  +++++  + +R+        
Sbjct: 8   WIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRNGIGNWQELDAQRVRALVVAHHQA 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+++R  + +  R+  V  NP   +  PK K         +   Q  +  
Sbjct: 68  GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQLLNTQ 127

Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E    SGLR ++     +  L  +   ++    G     V L     
Sbjct: 128 PCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187

Query: 243 KLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             L      +  +              ++++        +    + G +     H +R  
Sbjct: 188 VALLAWLPVRAGWINQSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A+   ++      +    G   +   + YT   D   L 
Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH-LDFQHLA 286


>gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 314

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 42/300 (14%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
              +  + +      + + ++  ++ S   + +R+  + D     + ++     R  V S
Sbjct: 2   SAALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSS 61

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180
                 +  S  + L+++R  F++ +R E +  NP L +   K         +   +   
Sbjct: 62  LFEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLL 121

Query: 181 ------------------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                               ++     ++     E +   GLR S++    +  +     
Sbjct: 122 TKAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGG 181

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSI 271
             + +          L     K L                    F+N   +++    F  
Sbjct: 182 IARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQR 241

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     A +    + H +R   AT   DAGA    +    G + +   + YT  +   
Sbjct: 242 NLKNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER 301


>gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 95/288 (32%), Gaps = 26/288 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128
           L   I  +          +  + I++    ++ +     +      +  ++++ V   K 
Sbjct: 3   LDEYIQNFLIYLQTQRRYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKI 62

Query: 129 T----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKED 178
                P+S  + L +++   K+ VR + +  NP  +V  PKR    +          ++ 
Sbjct: 63  KQKLAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKF 122

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            +  ++      + RL  E +  SGLR S+        LQ     ++          V +
Sbjct: 123 PELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPI 182

Query: 238 PDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
            D  +  L            TP      F++ + +  +               G     S
Sbjct: 183 TDTLISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIGWEGKAS 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332
            H +R   AT   + GA    +    G   +   + YT   A+R++  
Sbjct: 243 PHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQA 290


>gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp]
 gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp]
          Length = 315

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 95/300 (31%), Gaps = 24/300 (8%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
           T +  +  Y +       ++V++   +     +++      G  D+  + T+ +R  +  
Sbjct: 17  TFEAHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFCEAEGLSDWAALDTRSLRRLIAR 76

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    S  + L++ R L+++ +R+     +P   +  PKR+    R    +   Q 
Sbjct: 77  LHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTLDADRSAQL 136

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                E      + +   E    SGLR S+     V  L      ++ +        + +
Sbjct: 137 LDGAVEDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVRVRGKGNKTRELPV 196

Query: 238 PDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGV 289
                + L                 FI+   +++      +  +     + G +   H +
Sbjct: 197 GSMARQALEQWLPLRKLAGPSDGAVFISQQGRRLGPRAVQLRVRQAGVRELGQHLHPHML 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           R   A+   ++      +    G   +   + YT   D   L     +   R      S+
Sbjct: 257 RHSFASHMLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLATVYDQAHPRAKRKGGSE 315


>gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 334

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 35  FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 94

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V++  +  +P   +  PK+     +   +E + 
Sbjct: 95  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQEWLN 154

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 155 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 214

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L     + L      ++T          +           K  A  A     G + S 
Sbjct: 215 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 275 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 321


>gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2]
 gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2]
          Length = 345

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 110/300 (36%), Gaps = 15/300 (5%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
             YY+    G RI+  Y     F+  YM+         +   SP+ K  ++ WLI++Y +
Sbjct: 21  KTYYYAHRGGPRIQAKY-GSPEFVTQYMAL--------KQSASPKVKRNSIDWLITQYLE 71

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136
           S  + +L+  S+  ++ Y   I +K G       T        R    S +    +A   
Sbjct: 72  SYDFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYA 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L  ++ L  WAV       NP   ++  KRK     R       Q        G   +  
Sbjct: 132 LAVLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTVAGCHVKNP 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F   L +  R  D           +   I+  KTG  + +++P+    +L       E  
Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F+N+  Q      +   F+A    A VN  + H  R  + T++   GA+  E+    G  
Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311


>gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1]
 gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1]
          Length = 308

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 99/308 (32%), Gaps = 43/308 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128
           I  + +        + N+  S+                G F       +   + + +R  
Sbjct: 7   IEAFLEMMAAERGASDNTLASYRRDLGDADAYLEAPCGGVFKASAADIRKYLADMTARGF 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             ++  + L+S+R  FK+   +     +P   ++ PK+     +  ++ +M         
Sbjct: 67  ASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALLERAAD 126

Query: 187 -----SEGSQPRLAF-------EFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTII 233
                  G+  R+A        E L  SGLR S+     ++  L++  F     K G   
Sbjct: 127 EAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGKGGKER 186

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV- 282
            V L     + +A+    +       +   +          +   F+   K  A +AG+ 
Sbjct: 187 MVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAGRAGIS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               S H +R   A+     GA    +    G   +   + YT   +         +R+ 
Sbjct: 247 TAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLE---------KRLQ 297

Query: 341 SVVDSDDP 348
            +V    P
Sbjct: 298 ELVQKHHP 305


>gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia
           J2315]
 gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V + Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292


>gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK      +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L +      
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  KA   +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit
           7]
          Length = 299

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++     +++           +   I+      +    + 
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKARLSSWSDLDIQHLRSFTARQHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E L  SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKAR 184

Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +    +      +D   ++            +  KA   +  G N   H +R   A
Sbjct: 185 QALEVWLPLRALTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
           +   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 245 SHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 340

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 102/288 (35%), Gaps = 31/288 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESR- 126
            I  Y +      + A+++R ++ S   Q+I        G     +++   +R  +    
Sbjct: 43  WIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLY 102

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + L + R  F++ VR+  +  +P   ++ PK      +  ++ ++    S
Sbjct: 103 AVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLS 162

Query: 185 F------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                       +     E    SGLR ++ C   +  +   +  ++   K G    V +
Sbjct: 163 AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPV 222

Query: 238 PDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +  ++ ++                     F+N+  ++++           A  A + + 
Sbjct: 223 GEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERG 282

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            S H +R   AT   D GA    +    G   +   + YT   A+R++
Sbjct: 283 ISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLK 330


>gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 354

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 87/254 (34%), Gaps = 18/254 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
              +  ++ S+  +  + +    +     +T + +   +       +++ + A Q L+++
Sbjct: 91  KGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSHAFANQALSAI 149

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +  ++ +++++ V       + RPK++       ++ ++       +   + +       
Sbjct: 150 KFYYQHSLKKDKV----LYDLPRPKKEKTLPNILSQREVLSILDSVN-NIKHKSILLLTY 204

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR  +  R  V  + ++     ++  K        L +  +  L    + ++     
Sbjct: 205 SAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWL 264

Query: 259 ND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
                    +        F     +A V K  S H +R   AT   + G     +    G
Sbjct: 265 FPGGKENCFLTERSVQKTFSVACKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLG 324

Query: 313 WKTVDQAETYTKGA 326
             +    E YT  +
Sbjct: 325 HSSSKTTEIYTHVS 338


>gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 400

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 119/375 (31%), Gaps = 37/375 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +T      G   + +R      ++    P +  F   Y   + G   K E +  P   
Sbjct: 13  PGITLFVDHRGTTRWRYRSKTIKGKLMPGNPGDEEFEKEYKLLVEGEPKKAEVVELPDAA 72

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTK 117
            P T +        +  W  L   ++        + +            GD     +   
Sbjct: 73  LPQTFRAAWKALTSTQDWADLDPATKSKQSRNAKEFLDLPIVPGKEGTWGDVPVNDMDDD 132

Query: 118 HIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KR 166
            +             K TPS        ++ +F +A ++++   +P   V+         
Sbjct: 133 DLEKIKLRLSVDSKGKPTPSKPWHVKVVLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNG 192

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------- 216
              G +PW  E  QQF++    GS  R  +   L+ G R  D  R               
Sbjct: 193 GYVGWKPWPWELRQQFEARHPIGSAARTCYALALFIGNRRGDVARLRWTDLKLVPFEDEW 252

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                  L     + L   P  KE   +N      +    +   
Sbjct: 253 IYVFDYIQNKKVQNDDDMRQIRPLSRMLSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMM 312

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                +AG+ K  + HG+RK      A+AGA+  +     G  T+D+   Y KGA ++RL
Sbjct: 313 AHWTHQAGMPKGYTLHGLRKSYGGDLAEAGASEMQQKDMLGHTTLDEVVNYAKGASKLRL 372

Query: 332 GIKNSRRISSVVDSD 346
            ++ +RR+    +  
Sbjct: 373 TVEGTRRLEEYHEKR 387


>gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas
           maltophilia R551-3]
 gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3]
          Length = 296

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 83/275 (30%), Gaps = 17/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
            +  + +       ++ ++  ++    D +   +         +  + +R  V       
Sbjct: 3   AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRG 62

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184
            SA    + L++ R  + W ++   + +NP  +++ P+      +    ++  Q    + 
Sbjct: 63  LSAKSLQRRLSACRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+ C    + L           K      V       +
Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPARE 182

Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            L                      ++     I  +  A + G+  +   H +R   A+  
Sbjct: 183 ALQAWRAESGGGPAMPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276


>gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I++Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PK      +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     +++ ++  +  +                     
Sbjct: 126 AENLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEVTVRGKGDKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes
           HL027PA2]
          Length = 331

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 55/304 (18%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
             +Y +       L+ N+  ++     +     G        ++T   +   R  ++   
Sbjct: 9   AEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S  + + ++R L ++AV    +  +    +    R     +  + + ++   +   
Sbjct: 69  LAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPD 128

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELP 238
               EG +     E L  +G R S+ C   V  ++  +           K      V L 
Sbjct: 129 TSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLG 188

Query: 239 DGFMKLLAMTPIGKETFFI------------------------------------NNDKQ 262
               K +    I     +                                     N   +
Sbjct: 189 SYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGNGEHALLLNTRGR 248

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +++        +     AG++    S H +R   AT   D GA    +    G  +V   
Sbjct: 249 RLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTT 308

Query: 320 ETYT 323
           + YT
Sbjct: 309 QIYT 312


>gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 367

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 106/359 (29%), Gaps = 30/359 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +    V +     G     +    G+ IR     ++     Y          R     
Sbjct: 3   RAKQDRGVFERPVDSGIWWVRYTW-QGKEIRRKIGRKTDAKNYYARVRAQILEGRYEPEK 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           PR    TL   + EY ++    SL+   +  +  ++       G      I T  +    
Sbjct: 62  PRVV--TLGAWLGEYMETVTSVSLSQ--QRGYAKFWT---NTLGGRPIASIKTAELERIQ 114

Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            S +      PS+  +    ++  F  A+R   +  NP   V   K         ++ D 
Sbjct: 115 VSLREAGKLAPSTINRHFAFLKHTFNIALRDGLIKENPVKGVHFFKEPKGRTVFLSEADE 174

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            + K  +S    P +  E  +++GLR S+      +++      +    + + +T  +P 
Sbjct: 175 AKLKESFSPEYWPYV--ELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPL 232

Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHGV 289
                     +K   +           +  +  +   F    F     KAG+     H +
Sbjct: 233 NDTALAVLRDLKARQVILSPWVFPSPVDHTKPRDGNAFYKKVFVPAIEKAGLSGVVWHTL 292

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R    +    AG     +    G K       Y        L   +      ++   +P
Sbjct: 293 RHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAH------LSPDHLHEAVGILSGKNP 345


>gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf.
           novicida 3523]
          Length = 375

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 108/335 (32%), Gaps = 25/335 (7%)

Query: 22  IYYFRKGHGRRI-RLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKK-PTTLK 72
              +  G+ R+I  +      T   A   A         G  P +E  +        TL+
Sbjct: 41  RLRYTIGNKRKIYTIGKLGSITLTQAKKEAQRLIGLISQGIDPVQERKSKTTSNHDITLR 100

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESRK 127
             I+++     W +    +  + E    + + K  D   +++  K +         +  K
Sbjct: 101 EYINDFY--YDWYNKNNKNTKALEFSLGRRLEKIMDKSLKELNDKKVMIKYLNDYQKINK 158

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L++++ +F  A    Y+  N    V+  K     +R  +  +  +F     
Sbjct: 159 TSDATYNRMLSTLKGMFSRAYEFGYIETNNIKDVKLLKINATKVRYLSSSETTRFFESLE 218

Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGF 241
             +  +         Y+G+R S+        +  +   I       K+  +  + + +  
Sbjct: 219 LITSQQAKEIIIIAYYTGMRKSEILTLTFDDIDFDTKQIVLKSENTKSSKVRYIPMHEKV 278

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           +++L+         F++    K         +      + +     H +R    ++    
Sbjct: 279 LQILSNKNQKSGYIFVSEKTGKP-YDNIDRSWTKLMKLSEIENFRFHDLRHNFCSMLVMK 337

Query: 301 GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           G   + +    G   V   + Y   + D  +  I 
Sbjct: 338 GVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372


>gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20]
          Length = 307

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 38/286 (13%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------S 125
           Y         L+ ++  ++E    + +R     G    ++++   +   +E        +
Sbjct: 4   YLAHLRVERGLSPHTLSAYERDLGRYLRYLRSAGISAPQEVSRNDVAGFLEVLRTGSDGA 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R    SSA + +T++R   K+ + +   + +P  +V  P+      +    +++++    
Sbjct: 64  RPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVRRLLEA 123

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
                     + R   E L  +G R S++    V  L  +   ++   K      V +  
Sbjct: 124 AGVDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGKGRKERVVPMGA 183

Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282
              + L                G    F+N   + ++        +  A +AG+      
Sbjct: 184 YAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGA 243

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                S H +R   AT     GA    +    G  +V   + YTK 
Sbjct: 244 DERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 289


>gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
 gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876]
          Length = 306

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 91/288 (31%), Gaps = 28/288 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+    EY     +   L   +  ++++   Q  ++        +T   + + +     +
Sbjct: 4   LQTFFEEYISFCQYQKRLDRKTLNAYKTDLKQFSQQLHSISIEAVTPDMLENYISHLHQS 63

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------EGIRP 173
               +  + + S++  F +   +E +  NP   +    R+                    
Sbjct: 64  YKSKTVKRKIASLKAFFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETFLATI 123

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232
           + + +  +         +     E L  +G+R S+ C   V  +     +I    K    
Sbjct: 124 YHQRNCAKTTYQRRNAIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGKGSKE 183

Query: 233 ITVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + + +         + +  ++     + FF+N   + ++           +  A +  
Sbjct: 184 RCMHIGNDKVLSVLLEYKQEYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSALAAIEL 243

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           + + H  R   AT   +A      +    G  +++  E YT  A   +
Sbjct: 244 HITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKK 291


>gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L +      
Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  KA   +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1]
          Length = 332

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 89/299 (29%), Gaps = 33/299 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQI----IRKSGD----FDYRKITTKHIRSGVESR---KHTP 130
                +A ++  ++E    Q         G      D   +    +R+ +  R   K + 
Sbjct: 34  VKTRRMATHTAQAYERDTRQFLIFLCHHLGHEVTCKDLADLRVVDLRAYLAHRRTLKISA 93

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183
            S  + + S+R  F +  R+  V       +  PK      +P   +          Q +
Sbjct: 94  RSLSRNVASLRSFFNYLSREGIVDTLAAKLIRTPKHPKLLPKPLNVQAALHIIKPENQQE 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGF 241
                 ++       L   G+R S++     +   +   +      K G    V L    
Sbjct: 154 DEPWIIARNVAVLALLYGCGMRISEALALTPEQFSDPEITSLSVIGKGGKTRLVPLIKTV 213

Query: 242 MKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            +++           ++            +         +    + G+ ++   H +R  
Sbjct: 214 YEMVETYLKCCPYPLVSTQPMFRGVRGGPLQPAIIQRLVQNLRARLGLPETTTPHALRHS 273

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDDP 348
            AT     G     +    G   +   + YT   D  RL     K   R S V++S+ P
Sbjct: 274 FATHLLSRGGDLRTIQELLGHACLSTTQVYTH-IDTDRLLEVYQKAHPRASKVIESEKP 331


>gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus
           C3-41]
 gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 320

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 92/292 (31%), Gaps = 43/292 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHIRS---- 121
           Y  +      +  +R  +E       R                 D   I+ + IR     
Sbjct: 16  YLTTI--KGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIENLAAIDIATISIEEIREITLE 73

Query: 122 --------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172
                       R ++ +S  + + +++  FK+   ++  +  NP   +E PK   +   
Sbjct: 74  DLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESPKIGRKRPI 133

Query: 173 PWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                                +      F L  G+R ++ C+  +  +Q    ++  +  
Sbjct: 134 YMNFREATQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTVVGKGN 193

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKA 280
               TV L D  M+ LA      +T +  N  +                +   K    ++
Sbjct: 194 -KERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQS 252

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+ K   + H +R  SAT+   AGA    L    G  +V   + YT   D  
Sbjct: 253 GLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 304


>gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262]
 gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC
 gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262]
          Length = 300

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
             L   +    H   + + ++  ++E+      R   +    +      +  +   + ++
Sbjct: 5   GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
              E       + R+  E L  +G+R S+     +  L  +  +I    K      V   
Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184

Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 +                  ++  IN+    +             +KA +     
Sbjct: 185 AYAEDAITDYLSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM]
 gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD]
          Length = 358

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 91/266 (34%), Gaps = 16/266 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
               +++       + N+  ++   F Q++    DF   +++ + +R       E+ K +
Sbjct: 85  AFELFQEHLKLKGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLRSYFLYCFENLKLS 144

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +     + +++  F     Q          + RPK+K +  +   K+ + +     +  
Sbjct: 145 EAEINSRINAIKFYF----EQALHRKKMFFDIPRPKKKKQLPKSLNKKQILKIFEVTT-N 199

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + R   +     GLR S+     ++ + +    ++ +         V LP+  +  L  
Sbjct: 200 LKHRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRIENAKGKKDRMVPLPESILPELRA 259

Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                +              +       FK    KAG+NK+   HG+R   AT   + G 
Sbjct: 260 YYREYKPKKYLFEGQYGGMYSVRSVQSVFKTAMRKAGINKTVGIHGLRHSYATHLLEMGT 319

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   + YT+    
Sbjct: 320 DIRYIQEFLGHNNIKTTQIYTQVTSE 345


>gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 297

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 99/290 (34%), Gaps = 25/290 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFD-YRKITTKHIRSGV 123
            T+     ++          +  +  ++ S F      +   G       ITT  +R   
Sbjct: 1   MTIHDYFEDFINFLKAEKDASAFTIANYTSDFSIFSSFVESQGIKPTVDAITTPLLRKYT 60

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +K+   +  + + S+R  F + + QEY+  NP   +  PK+          +++
Sbjct: 61  TFLKIDKKYEVETIRRKINSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEI 120

Query: 180 -----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTI 232
                   K       + +   E L+++GLR S+      Q++     +I     K    
Sbjct: 121 KLLISMPMKHSRDNKLRDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKKQ 180

Query: 233 ITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
             V + +  +  L               FI+ +  +++ T  +  F+     AG+     
Sbjct: 181 RVVPITEPLISDLWAYLQTRLPLHDNAVFISGNGTRLSTTPLNQLFRRYLKLAGLTGKGY 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           + H +R    T+    GA    + +  G   ++  + YT   D   L  +
Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTH-VDMKHLKQE 289


>gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
 gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno]
          Length = 303

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 93/277 (33%), Gaps = 28/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------GVESR 126
               Y +      L+ N+ +S+    +++I     ++  + T  +I            ++
Sbjct: 8   AFQHYLRLQ--RGLSQNTAVSYGLDIEKLICYLEKYNITE-TPNNIEEDTLRQFVYEVAK 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + +++++  FK+ + ++     P   +E PK   +     + +++    +  
Sbjct: 65  DLNARSQARLISALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLASI 124

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KTG 230
                EG + +   E L   GLR S+     +  L  +   I+                 
Sbjct: 125 DLSTDEGHRNKAMIEMLYACGLRVSELISLRLSDLFFDEDFIRVMGKGSKQRLVPIEAYT 184

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
                +  D   + L +    ++  F+N   +++         +  A   G+ K+   H 
Sbjct: 185 QKQVKQYIDNQRRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHT 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   AT   + GA    +    G + +   E Y   
Sbjct: 245 FRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHV 281


>gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
 gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6]
          Length = 286

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 31/282 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQF 136
            L+ N+  ++      +          + +   +++              +   S+A + 
Sbjct: 9   GLSKNTLAAYRRDLQGLAAAL----PAQQSAGLLQASEAHLLGVITARHAQTRASTANRR 64

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           LT  +  ++WA+R+   + +P L +   ++        ++  ++   +        G + 
Sbjct: 65  LTVFKRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAPALDTPLGLRD 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT--- 248
           R  FE +  +GLR S+        L           K      V         +      
Sbjct: 125 RAMFELMYGAGLRVSELVSIRTLQLALVDQVLKVLGKGAKERLVPFGGEARHWIERYLTE 184

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                      +  F+      M         K  A +AG+    S H +R   AT   +
Sbjct: 185 ARPALLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVPLSPHTLRHAFATHLLN 244

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            GA    +    G   +   + YT  A R RL   ++R    
Sbjct: 245 HGADLRAVQLLLGHADISTTQIYTHVA-RERLKQLHARHHPR 285


>gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
 gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 105/354 (29%), Gaps = 44/354 (12%)

Query: 20  KIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           K  Y +    R   GRR++      +  + A    L     + E       +  TL   +
Sbjct: 17  KAYYVYMDYGRDEDGRRVKKYRTCAT--LAAARRVLREFQSELESRQQVAPRALTLDQWL 74

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
             + +     + A  +   +     + +    GD   +K+T +H++         +  +P
Sbjct: 75  EYWMEQVVEPNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAMLMRDKGLSP 134

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  +    +      AVRQ+ +  +P   VE P+        +   +  +     +EG+
Sbjct: 135 NTVRRHHDLLSAALHTAVRQDIILRSPTERVEPPRVVPRE-VGYYGPEELKKLYALAEGT 193

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------- 231
              L  +     GLR  + C      +      I      T                   
Sbjct: 194 GLELVVKLAGMLGLRREEICGLQWSSVDFAQRRIHICAARTAAGGEIIQKETKNRSSTRV 253

Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                   L           +++    ++    S+ F     + 
Sbjct: 254 LHMSDELVRLLRRERAGQAENRLALGDKWEDSGLVAVDHMGHPLSPNAVSLAFTRFIRRN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
            + K + HG+R   AT+++  GA   ++    G  T       YT   D+    
Sbjct: 314 NLPKITLHGLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHLLDQNHEA 367


>gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
 gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185]
          Length = 293

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 93/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           LI  +     +  + +  + +++     Q+        G F+  ++  + IR  +     
Sbjct: 2   LIKSFLDYLRYERNYSEKTVLAYSEDIKQLQEFAQEEYGRFNPLEVEAELIREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +T +S  + L+S+R  +K+ +RQ  V  +P   +  PK K        + +M +    
Sbjct: 62  RGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLLDE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +      T K      +   D
Sbjct: 122 TDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATKA--GVNKSAHGV 289
              +L+      +        +                    K   +K      +S H +
Sbjct: 182 ELRELMLGYINIRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G +++   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYTHA 277


>gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
 gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2]
          Length = 305

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 99/279 (35%), Gaps = 22/279 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128
            +  +Y K     + ++++ + +     ++     +    + K+  + +R+   S K   
Sbjct: 16  EVFLQYLKYE--KNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQPEQLRAYSMSLKARA 73

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +    L+ +R  +K+   ++    NP  +++ PK +    +    + M Q  +   
Sbjct: 74  LSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQMHQLLAMNP 133

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
           E S   + +   E +  SGLR S+   A +  +      I+   K      + +    ++
Sbjct: 134 EDSFGFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERILPIGGKAIE 193

Query: 244 LLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +  F        F++  K +++  Q     K      G+      H +R   
Sbjct: 194 ALQDWLKCRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQGISSQIHPHKLRHSF 253

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A+   ++      +    G  ++   + YT   D   L 
Sbjct: 254 ASHMLESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 291


>gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 310

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRK 127
           L++ Y        L+++++ +++   + +   + + G  D+  +    +R          
Sbjct: 16  LVNFYEYLRAEKGLSLHTQRNYKQQLETMAFQLVQLGIEDWSSVDAAWVRQLASKGMRDG 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS    L+S+R  F + + +  +A NP   V  P++K    +    +++ Q      
Sbjct: 76  MKASSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVDE 135

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
           +     + R   E +  +GLR ++     ++ ++ +   ++          V      + 
Sbjct: 136 DDPLAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERKVPFAGQAVI 195

Query: 244 LLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            +      +      N+          +++             K  V  + S H +R   
Sbjct: 196 WVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVSSHISPHKLRHSF 255

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G + +   + YT   D   L 
Sbjct: 256 ATHMLESSQNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
 gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946]
 gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430]
          Length = 302

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 22/275 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTP 130
            Y K      L+  +++++      I   + +    ++ ++    +R   +        P
Sbjct: 16  RYLK--VERQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDASLVRSLAARSTRSGLKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S    L+++R    W V Q  +  NP   V  P+      +    +++ +         
Sbjct: 74  ASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDP 133

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
              + R   E +  +GLR S+     + HL   +       K      + +    +  + 
Sbjct: 134 LAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVE 193

Query: 247 MTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +E F          N  ++++       F     K GV  +   H +R   AT  
Sbjct: 194 NWLAMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHM 253

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 254 LESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287


>gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
 gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41]
          Length = 299

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 24/277 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-- 126
             + ++        + +V++   +ES     +      G  D   +   H R  V     
Sbjct: 7   DALEQFMLYIQVEKNFSVHTVREYESDLLDFLAFLQREGINDLASVEYIHARLYVTKLYD 66

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K   +S  + ++S+R  F++  RQ         S+  PK+++     + +E++ Q    
Sbjct: 67  EKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDA 126

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239
            +    +  +     E L  +G+R S+     V+ +  +   I+    G    I      
Sbjct: 127 NTGDDLKSLRNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQF 186

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS--AHG 288
             + +L      +       + Q++                       KA ++     H 
Sbjct: 187 ASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHM 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +R   AT   + GA    +    G   +   + YT  
Sbjct: 247 LRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHV 283


>gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
 gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia
           denticolens F0305]
 gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105]
          Length = 334

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 96/317 (30%), Gaps = 61/317 (19%)

Query: 71  LKWLISEY-RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--E 124
              L+ +Y         L+  S  ++ES  D     +   G  D + I T ++R  +  E
Sbjct: 3   FAELLHDYCLFLKDSKGLSPQSLKAYESDVDQCLHFLCLHGRTDIQSINTDYLRMWMSYE 62

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           SRK   SS  + + ++R  F +    + +  NP   +  PK         T++   +   
Sbjct: 63  SRKVAKSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMD 122

Query: 185 FWSE---------------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
              E                                   +     E L  +G+R ++   
Sbjct: 123 QAEEVCERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVS 182

Query: 212 AGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET---------------- 254
             V  +     +   T K      V       + L                         
Sbjct: 183 LDVDDIDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAA 242

Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                F+ +  +++N  Q        A +AGV   S H +R  +AT   D GA   E+  
Sbjct: 243 DRSAVFVGSRGKRINQRQVREVVHRLAREAGVPDISPHALRHSAATHLLDGGADLREVQE 302

Query: 310 TYGWKTVDQAETYTKGA 326
             G  ++   + YT  +
Sbjct: 303 MLGHSSLQTTQRYTHVS 319


>gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD
 gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594]
          Length = 291

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L  N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++      ++  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A++AG+ + S H +R   A
Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 380

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 36/295 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVE 124
             ++  Y         L+  +  ++       ++  G            ++ + +R  + 
Sbjct: 23  ADVVEAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGLEPPVGAAALAGVSGRDLRRWLA 82

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +      +S  + L ++R LF++AVR+ ++A +P   +  P+ +    R +T E+ Q 
Sbjct: 83  HLEERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPRVYTPEEAQA 142

Query: 182 FKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
                + G      + R   E L   GLR ++     +  +      ++    G     +
Sbjct: 143 LLEAAASGHGPAALRDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVYGKGGKERIL 202

Query: 236 ELPDGFMKLL------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276
            L       L                     P   +  F+N    +++        +   
Sbjct: 203 PLAGPVAAALRAYLEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSPRGIQAIVRRVG 262

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A  A +    H +R   AT   D GA    +    G  ++   + YT    R RL
Sbjct: 263 AVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTH-VSRARL 316


>gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
 gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131]
          Length = 309

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 92/279 (32%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130
           I  +         L+  +  ++      I+      +  +   +    +R+     + + 
Sbjct: 17  IEAFLYYLRVERRLSPVTITNYRRQLSVIVEMLALLNIHEWQKVDATIVRNIAAKSRKSG 76

Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             A      L+S+R  F W V+Q  +  NP  ++  PK K    +    +++ Q  +  S
Sbjct: 77  LQAASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMDVDEVSQLLNMDS 136

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     V+HL  N        K      V +    + 
Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMGKGSKERRVPMGKTAVS 196

Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E +              ++++       F+    K GV  + + H +R   
Sbjct: 197 WLQRWLEMRELYDPEDDAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294


>gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
 gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 86/280 (30%), Gaps = 28/280 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSM 140
            L+  +  ++  + +             +       +   +         ++    L+++
Sbjct: 26  GLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAEFRRDGRASTTVAAHLSAL 85

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196
           R  F+W     + A    L+   PK++ E     T E++             G +     
Sbjct: 86  RSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAALFDAPDLSCPVGLRDAAML 145

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---- 251
           E  + +G R S+  R  +  +           K      V L    +++           
Sbjct: 146 ELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPLYARAIEVYERYLENGRPN 205

Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                          F+++  + MN+      F     KAG+  + + H +R   AT   
Sbjct: 206 LLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSDITPHAMRHTFATELL 265

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             GA    +    G  ++   + YT    DR++  +  + 
Sbjct: 266 GGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAH 305


>gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
 gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39]
          Length = 311

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
 gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH621]
          Length = 374

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 105/352 (29%), Gaps = 42/352 (11%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K  +    G     G+R +       T   A   A      +    +    K  T
Sbjct: 6   RKRGEKWSFTIDIGRDPLTGKRKQKTASGFKTKKEA-ERACNDLIHQFNTGSLVDDKNLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           L   + E+ ++     +   +  +++   + +II   G    + +   H +  V+S    
Sbjct: 65  LSEYLQEWLENTAKQRVRETTFTNYKRAVNNRIIPVLGSHKLKDLKPLHGQRFVKSLIDE 124

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185
             +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F    
Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYA 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQK 228
             +       F   L +G+R  +      +++                 +   F+     
Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDERGFRFTEPKTS 244

Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +         +              +       +  F   D Q +     +  F+ 
Sbjct: 245 GSKRLISIDQTLCKEFKSYKAKQNEFKLAIGTAYEDHDLVFCREDGQPIYPRTLTTIFER 304

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               + + K   H +R   AT+    G     +    G  ++    +TY+  
Sbjct: 305 VVKTSKIPKIRFHDLRHTHATLLLKLGINPKIVSERLGHSSIKTTLDTYSHV 356


>gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 295

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 107/298 (35%), Gaps = 27/298 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124
            TL+     Y K+    S +  + ++++       +  +++G F  + +I+ + +   + 
Sbjct: 1   MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L+S++  ++   R+  V  +P ++++  + K +    + ++++ Q 
Sbjct: 59  ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
               ++G     + R        +G+R S+     ++ L      I    K      V  
Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178

Query: 238 PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                K L                     F+N   + +++   +   +    KAG+    
Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             H +R   AT   + GA    +    G + +   + YT  + +  L  +  +     
Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295


>gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14]
 gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14]
          Length = 305

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
 gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426]
          Length = 311

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 99/303 (32%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++    +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDAAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       L+  +  S+         I+  +G  D+R +    +RS V   K   
Sbjct: 20  VDAFLRYLKVERQLSPLTLTSYSRQLSAVITILSAAGIADWRALDASSVRSVVSRSKRDG 79

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S    L+++R    W V +  +  NP   V  P+      +    +++ +      
Sbjct: 80  LHSGSLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEVNRLLEIDL 139

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
           +     + R   E +  +GLR ++      QH+   +       K      + +    + 
Sbjct: 140 DDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVT 199

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L              +  FI+N  ++++       F     K G+  +   H +R   A
Sbjct: 200 WLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGVKQGINSHVHPHKLRHSFA 259

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 260 THMLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 296


>gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 295

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 105/296 (35%), Gaps = 28/296 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VES 125
             LI+++  S    + + ++  ++ +    +     + +       T   +R        
Sbjct: 5   ASLINKFILSLQSKNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYLGVTSE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
             +  ++ ++ ++ MR   K+ ++ E +  NP   +  PKR+    +  T+E+  +    
Sbjct: 65  GDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDT 124

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
             +     ++ +  FE +  SGLR S+     ++ +  N+  ++          V + D 
Sbjct: 125 AANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDL 184

Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            ++ L      +  +   +         ++     +   K    KA +    +AH +R  
Sbjct: 185 AIEALKEYLSTRGVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   + G     L    G K++   + YT  +           R+  +     P
Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVS---------LDRLKKIYGQTHP 291


>gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
 gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 80/290 (27%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSG 122
           +  +  +  +       A N+  ++ +                 G     +I    +R+ 
Sbjct: 9   RDALQLWLDTQRALAGRAENTITAYRTDVVEFMSFMTLHFGATQGLAPLARIGVPDMRAW 68

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +       S  + L++++  ++W   +E       LS   PK + +  RP  ++  
Sbjct: 69  MAQMRADGIGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLAEDAA 128

Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++     +            K G  
Sbjct: 129 RAMIDTVELQSSKPWIAARDMAVVTLLYGCGLRISEALSLTGRAAPLPATLRIRGKGGKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285
             V +       +                         +NA            + G+  +
Sbjct: 189 RLVPVIPVARAAVDTYLRLCPWPVEPETPLFRGARGGPLNARSIQAVMAKARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              H +R   AT   +AG     +    G  ++   + YT   D   L  
Sbjct: 249 ATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 297


>gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 332

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 28/303 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           P     +L     ++        + + N+  ++                D  +I    IR
Sbjct: 30  PEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIR 89

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S              S  + L+S+R  +K  +R++ V  NP   +  PK + E  + +  
Sbjct: 90  SYFAYLAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRI 149

Query: 177 EDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229
            + ++   F SE +      + R   E L  SGLR  +   A +  L  ++       K 
Sbjct: 150 NETEEILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKG 209

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGV 282
                V      +  L      +   F        N   +K+           +  K G 
Sbjct: 210 RKERFVYFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGW 269

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-----RLGIKN 335
            K+   H  R   AT   DAGA    +    G  ++   + Y   +        R    +
Sbjct: 270 EKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPH 329

Query: 336 SRR 338
           +R+
Sbjct: 330 ARK 332


>gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710]
 gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190]
 gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902]
          Length = 305

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 84/287 (29%), Gaps = 34/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG----- 122
           L+  +  Y          + N+  ++    D+ +      D     +TT  +        
Sbjct: 11  LRRAVQGYLDHLTIERGRSTNTVAAYRRDLDRYVAYLESLDLALEDVTTTVVEDYVTVVR 70

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                       SA + L ++R    + V +     NP   V  P +     +  +  D+
Sbjct: 71  TGSDGRSALAAGSAARSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKAISTYDV 130

Query: 180 QQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
           ++  +    G      + R   E L  +G R S++    V  L         +  G    
Sbjct: 131 ERLLAAAGAGDTVASVRNRALLELLYSTGARISEAVTLDVDDLDLTPGLESVRLFGKGSK 190

Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                  +L     G    F+N    +++        +  A  A
Sbjct: 191 ERVVPVGSFAVEAIQAYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAWQVLRTSAETA 250

Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           G++     S H +R   AT     GA    +    G  +V   + YT
Sbjct: 251 GLDGAEHISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYT 297


>gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
 gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692]
          Length = 306

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 87/284 (30%), Gaps = 22/284 (7%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
                Y +       LA  S  ++    +  I+                    +   K  
Sbjct: 13  AWKDAYVEHLLVIKGLADPSVAAYVQDIEMFIQFLEQKGESVATCDANAFLYFLLHLKSR 72

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + L+S+R  F++         +P   V+ PK   +       ++MQ   +  
Sbjct: 73  GLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQEMQGLLAQP 132

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
             G+    + R   E L  +GLR S+  R     + +    ++    G     V L    
Sbjct: 133 DTGTKLGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKERLVPLHPAA 192

Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           +  +          F    K        + ++        K  A  AG+ +S   H +R 
Sbjct: 193 LDYVRTYVQAWRPQFAPQHKVLFLNRSGRCLSRQAVWKNVKRYAVAAGIRRSISPHTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
             AT   + GA    +    G   +   E YT   A R+R   +
Sbjct: 253 SFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQ 296


>gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
 gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis
           SKA53]
          Length = 401

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 100/345 (28%), Gaps = 23/345 (6%)

Query: 13  KERTRHGKIIY-YFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64
           + R   G+  Y  +R  +G  R  +L      T   A                     S 
Sbjct: 36  EVRISGGRTFYLRYRDTRGKTRYAKLADAQHVTLHQARTLCGRMRNKIAMGINPSAEKSI 95

Query: 65  RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +++  T        Y   +     +  +  +       +I   G     +I+T+ + +  
Sbjct: 96  KRQVPTFGDFAQDRYMPFSQANKRSWKTDETLIRT--HLIPTFGKMHLDEISTEDVLNMQ 153

Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWT 175
           +        P S  + L  +R +F  A R   +          + + +   K E      
Sbjct: 154 QAGLKAGAAPGSVNRRLILLRYMFNLAWRDWKIAGVTENPTHGVRLLKENNKKERYVRAE 213

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +      +   S+    +    FL+ +G R ++   A    +       +  +T +    
Sbjct: 214 EMARLYDEVCGSQNIMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPETKSGYAR 273

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVN-KSAHGVRK 291
            +P     +  +  +   +                     +     +AG+     H +R 
Sbjct: 274 HVPLNDGAMAVLQQMQDVSRSQYIFGNPNTGKPYVHIYYAWDIARRRAGLPDVRMHDLRH 333

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             A++  + G++ + +    G   +   + Y        L + N 
Sbjct: 334 TFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDVSNI 378


>gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 295

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 108/298 (36%), Gaps = 27/298 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE 124
            TL+     Y K+    S +  + ++++       +  +++G F  + +I+ + +   + 
Sbjct: 1   MTLEEQFLSYLKNE--RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLL 58

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L+S++  ++   R+  V  +P ++++  + K +    + ++++ Q 
Sbjct: 59  ATGQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQV 118

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
               ++G     + R        +G+R S+     ++ L      I    K      V  
Sbjct: 119 IRSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFF 178

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                K L                  E  F+N   + +++   +   +    KAG+    
Sbjct: 179 DQESKKYLEEYLQAARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGA 238

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             H +R   AT   + GA    +    G + +   + YT  + +  L  +  +     
Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQ-HLTAEYRQHFPRK 295


>gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
 gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18]
          Length = 294

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
           + ++     +  + +  + I++     +  R   +      +  I +  +R+ +E     
Sbjct: 4   VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
            +SA    + L+++R  +++A+R++ +  +P   ++ PK++    +   + +M++     
Sbjct: 64  GNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESEMERLLDSK 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             +   +    R        +G+R S+      + + N       T K      V     
Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGKRNKQRIVPFGKE 183

Query: 241 FMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
              + A     + T        FF     ++M   Q     K   +K      +S H +R
Sbjct: 184 LADVFAQYQEVRNTTVKGDSIAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278


>gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
 gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069]
          Length = 299

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 105/281 (37%), Gaps = 24/281 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128
           I  Y     H    + ++  ++    ++++    D    ++++ITT+ IR  +  R    
Sbjct: 5   IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PSS+   L++MR   ++ + ++ + +NP + V  PK+     +    + +  F     
Sbjct: 65  ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
           E      + +   E L  SG+R ++     +  L  +  S++   K   +  V   +   
Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNSSK 184

Query: 243 KLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           K+L++    +  F  N             ++              K G+N     H +R 
Sbjct: 185 KVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++ +    +    G  ++   + YT   D   L 
Sbjct: 245 SCATHVLESSSDLRAVQELLGHASISTTQIYTH-LDFQHLA 284


>gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
 gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT
           11841]
          Length = 293

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 93/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128
               + +      + ++ +   +    +         D    +  +    +R  + S   
Sbjct: 2   WTEAFLEYLTLERNYSLRTVEEYRDDLNAFESYYKKVDSTLSWETMDGDVVRDWMVSMME 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
              +A    + L+++R  +++ +R++++ ++P  +++ PK+K        + +M +    
Sbjct: 62  AGRTATTVNRRLSALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLLDG 121

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                   G + +L       +G+R S+      Q +      I+         +     
Sbjct: 122 DFFGNDFLGKRDKLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRVTGKRNKQRIVPFGD 181

Query: 241 FMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289
            ++ L    + +++          F++   +++   +     +           +S H +
Sbjct: 182 ELEALLTAYLDEKSSLGLEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    L    G +++   E YT  
Sbjct: 242 RHTFATSMLNHHADLESLKELLGHESISTTEIYTHT 277


>gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
 gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194]
          Length = 300

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 86/274 (31%), Gaps = 27/274 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+       E  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + R+  E L  +G+R S+           +    +   K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190

Query: 245 LAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +      +     +           +    +             +KA +      H +R 
Sbjct: 191 ITDYLPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G  ++   + YT  
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein
           [Thermoplasma acidophilum]
          Length = 283

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 96/270 (35%), Gaps = 22/270 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128
             +S + +       +  +   +    DQ +         +IT   I          +++
Sbjct: 7   EYLSRFVEYMTGERKSRYTIKEYRFLVDQFLSFMNKKP-DEITPMDIERYKNFLAVKKRY 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +S    + ++++ +K    +  + + P      PKR +      ++++ ++     S 
Sbjct: 66  SKTSQYLAIKAVKLFYKALDLRVPINLTP------PKRPSHMPVYLSEDEAKRLIEAASS 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            ++       L Y+G+R  + C   +  +  Q +I ++++ K      V + +  +K L 
Sbjct: 120 DTRMYAIVSVLAYTGVRVGELCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKALG 179

Query: 247 MTPIGKETFFINNDKQKMNATQFSI-------WFKAKATKAGV--NKSAHGVRKFSATIS 297
                + +   +ND   ++  +            +    KAG+    + H +R   AT  
Sbjct: 180 SYLDLRLSMDTDNDYLFVSNRRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTFATSV 239

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              G     +    G  +V   + YT   D
Sbjct: 240 LRNGGDIRFIQQILGHASVATTQIYTHLND 269


>gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 99/290 (34%), Gaps = 29/290 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITT---KHIRSGVESRKHTP 130
            ++     +   L+ ++  ++ +  +Q       + +  +      +H+RS + S   + 
Sbjct: 5   QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
              SS  + + ++R  F + +R++ +  +P   ++  K      +   ++ M+       
Sbjct: 65  MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                EG + +L  E L  +G+R S+        +     +I    K      V L    
Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184

Query: 242 MKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATK---AGVNKSAHG 288
            +L+    + KE  F                           K   T     G  KS H 
Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLG-TKSPHV 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           +R   AT   + GA  + +    G  ++   + YT    D+++     + 
Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAH 293


>gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 389

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 115/378 (30%), Gaps = 56/378 (14%)

Query: 18  HGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            GK  +      G     +RI      E+T        L   + + +          T K
Sbjct: 8   RGKNKWRLNVPDGTGPDGKRITHRKVVEATSEREAKKLLDVFSAEVQKGQYIAPSKLTFK 67

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
               ++ +S     LA  +   ++   + +I+   G      I   HI     + +    
Sbjct: 68  EFSQKWLESK--KDLAPKTLYRYKEILNSRILPAMGHLKIEDIKPFHIMQFYGNLQEPGI 125

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +P++ +     +  +F  AV+ + +  NP L VE PK K      + +ED 
Sbjct: 126 REDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPALRVEAPKAKKHKATSYEEEDT 185

Query: 180 QQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNI 221
               S   E   + +      L  GLR  +      + +                  +  
Sbjct: 186 AALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDIDLTKGTLEVRQSSQYLPGHGT 245

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNAT 267
           F+   +   +   + +P   M LL                     +  F   D + M+  
Sbjct: 246 FAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVGGLWQASDRLFTTWDGKPMHPD 305

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             + WF        +     HG+R  +A+    AG     + +  G  + +     Y   
Sbjct: 306 SITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLKNIASRLGHSSPNTTLNIYAHS 365

Query: 326 ADRIRLGIKNSRRISSVV 343
                +  + + +++ ++
Sbjct: 366 F--KSVDAEAANKMNDIL 381


>gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275]
 gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
 gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136]
 gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76]
          Length = 291

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 19/273 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
           LI    ++      L  N+   +    ++I R+        +      + + V       
Sbjct: 5   LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
           SS  + L++ + L+ W  R+     NP   ++ PK         T++ + +  +      
Sbjct: 65  SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDT 124

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
             G + +   E +  +GLR S++      ++  +   I    K      V +       +
Sbjct: 125 PHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWV 184

Query: 246 AMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                            +  F++  K  ++     +  K  A +AG+ + S H +R   A
Sbjct: 185 GRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T     G     +    G   ++  + YT  A+
Sbjct: 245 THLVQHGLDLRVVQDMLGHADLNTTQIYTHVAN 277


>gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193]
 gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193]
          Length = 312

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  + +        + N+  +++      +           G     +ITT  +RS 
Sbjct: 15  RNALQLWLQGLRALDGASDNTINAYQGDISSFLAFMTQHSGAPQGLGALARITTSDMRSW 74

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
           +   ++  + A    + L++++  ++W   +E   +   L+   PK + +  RP  ++  
Sbjct: 75  MAQERNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARAPKFQKKLPRPLDEDAA 134

Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 ++   +     ++       L   GLR S++     +            K G  
Sbjct: 135 RAVIETVELQSNTDWIAARDVAVVTLLYGCGLRISEALALTGKTAPLPSSLRILGKGGKE 194

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK- 284
             V +     + +A            +            N  Q          + G+   
Sbjct: 195 RLVPVIAAAREAVARYIALSPYPNEADGPLFRGARGGALNPRQIQGAMAQARAQLGLPAS 254

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   +AG     +    G  ++   + YT   D   L  
Sbjct: 255 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMA 303


>gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
 gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2]
          Length = 342

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 106/340 (31%), Gaps = 37/340 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGS 86
              ++        S    A+ + +T        +      P T    ++           
Sbjct: 2   PARKKKSPSANITSRATDAHAAGVTAGVNMTAELPPGLADPITDFCAVLEL------ERG 55

Query: 87  LAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139
            + ++  ++ES   Q            D+R +T   +   + S     ++ +S  + L++
Sbjct: 56  RSDHTVEAYESDLTQCATFLQRQKKLADWRAVTGAAVTDWLYSLDGDDYSVASLARKLSA 115

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191
           +R+  +  VR++    +    ++ PK           E++ +  +              +
Sbjct: 116 LRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLAAPGGGGGGGGPHALR 175

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI 250
            R   E    SGLR S+     +Q +      ++    G     V +     + LA    
Sbjct: 176 DRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERVVPVGSKAREALATYLT 235

Query: 251 GKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                F+   K             ++     +  K     AG+      H +R   AT  
Sbjct: 236 AARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGITKPVKPHLLRHSFATHL 295

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
              GA    +    G  T+   + YT   +  RL  +++R
Sbjct: 296 LSGGADLRAIQEMLGHATIGTTQIYT-AVEERRLLDQHAR 334


>gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
 gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1]
          Length = 305

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 88/279 (31%), Gaps = 27/279 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESR 126
            L++ + K     + + ++  +++                 +        +++   VE  
Sbjct: 6   QLLAMWLKERMIQNQSEHTLNAYQRDLTDFFDFCEKRKLELMQVEASDLREYLAYRVEQS 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + SS  + L+S+R   KWA + +++ +NP    +  ++          E + Q     
Sbjct: 66  NLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFKLKRKSRPLPGMIDIETVHQILDQT 125

Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVE 236
                       + +   E L  SGLR ++     +  L  N   ++   +   T +   
Sbjct: 126 APEDELGTQLWLRDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKGNKTRVIPF 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV--NKS 285
                  L+    + +        +  +            Q     K +A +AGV  +  
Sbjct: 186 GKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNVDLH 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   A+    A      +    G   +   + YT 
Sbjct: 246 PHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH 284


>gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
 gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC
           15579]
          Length = 326

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 106/299 (35%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV------ 123
           Y ++      + N+  S++       R          G+ ++  I   +I          
Sbjct: 23  YLRTI--KGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEISNISDEDIKNISL 80

Query: 124 -----------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                        R +   +  + + ++R  FK+   + + +  NP L +E PK      
Sbjct: 81  TDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIKENPALELESPKISKRNP 140

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T ++ ++  S      + R        L  GLR S+ C   + +++N++ +    K 
Sbjct: 141 VYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDVLT-VIGKG 199

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               TV L    +K L      ++            F++ +  ++N     +  K    K
Sbjct: 200 NKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKK 259

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
           +G++    S H +R  +AT+    G      L    G + +   + YT   +DR+R  +
Sbjct: 260 SGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV 318


>gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975]
          Length = 303

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 17/288 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT- 116
           E  +S R     L+  I ++ +        +  +   + S    +  +  +F    + + 
Sbjct: 4   ESGSSERHVGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAFTLNSL 63

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   +   +   + S+  +   ++R    WA R+ Y+  +    +  PK         + 
Sbjct: 64  REWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSP 123

Query: 177 E-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
                       +      +     EFL  +G+R ++     V  +  +  + +      
Sbjct: 124 TAAGELMGNAVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGN 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV 282
               V   D     L                  F+     +++A Q     +  A   G 
Sbjct: 184 KQRVVPFGDAAHDALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGA 243

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + HG+R  +AT   + GA    +    G  ++   + YT  + + 
Sbjct: 244 PGLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR 291


>gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
 gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374]
          Length = 302

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 21/277 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----- 125
              +   Y  S    + + N+  ++ S   +      +        K       S     
Sbjct: 26  FNKIKESYITSLKNNNYSQNTIKTYSSIIHKFTTYLKNQ-IAIYNEKEFIKYFNSYILYL 84

Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTK 176
           ++    S          ++   ++       +I     ++ P          + +   T 
Sbjct: 85  KQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITW 144

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233
           ++            + +L    L  SGLR S+     V ++      +            
Sbjct: 145 DENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLTVDNVNFEGKQLSIVGKNNSRVIL 204

Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                     K L           +N     +      +  K    ++G+ K  + H +R
Sbjct: 205 LDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHILR 264

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AT   + G     +    G   +   + Y++ A+
Sbjct: 265 HSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301


>gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 315

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 28/286 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRK 127
              I  + ++       A N+++++         +     +  +T  H+       ++  
Sbjct: 9   AHWIQAFLEAQAAELDAATNTQLAYARDLIDFSERLKGIHFAAVTQDHVEKYLIWCDAHG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              S+  + L++++ LF++A  + +   NP + V  P R     +  + +++    +   
Sbjct: 69  LAKSTRARRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEVDALLNAAR 128

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
               E  +     E L  +G+R ++     V   + +   +    K      V L     
Sbjct: 129 DAKKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPAR 188

Query: 243 KLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVN--- 283
              A+    ++       K                  +    F    K  A   GV    
Sbjct: 189 AATAIWLKTRDRTEDEAFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLALAGGVPPFK 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H +R   AT   + GA    +    G   V   E YT   D  
Sbjct: 249 ATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDER 294


>gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           AMMD]
 gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD]
          Length = 306

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M         K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158]
          Length = 302

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 22/275 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTP 130
            Y K      L+  +++++      I   + +    ++ ++    +R   +        P
Sbjct: 16  RYLK--VERQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDAALVRSLAARSTRSGLKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S    L+++R    W V Q  +  NP   V  P+      +    +++ +         
Sbjct: 74  ASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDP 133

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
              + R   E +  +GLR S+     + HL   +       K      + +    +  + 
Sbjct: 134 LAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVE 193

Query: 247 MTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +E F          N  ++++       F     K GV  +   H +R   AT  
Sbjct: 194 NWLAMRELFEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHM 253

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 254 LESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287


>gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS]
 gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS]
          Length = 317

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 84/287 (29%), Gaps = 28/287 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129
             I++Y +       LA  +   +  +   +   +   +    ++ T HIR  +      
Sbjct: 14  DWIAKYLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQTAHIRRWMAKLHSA 73

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------Q 180
              P      L+  R  ++W   +  +  NP   V  PK      +    +D        
Sbjct: 74  GREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAELH 133

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTI 232
              +     ++ R   E L   GLR S+      Q     +              K    
Sbjct: 134 DEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANVLGKGSKR 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKS 285
             V +     + L      +    +          +M++       + ++ KAG+     
Sbjct: 194 RIVPVGSKAAEALQEWLDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSLKAGLAAPVH 253

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H +R   A+    + +    +    G   +   + YT+  D   L 
Sbjct: 254 PHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTR-LDFQHLA 299


>gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           668]
 gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10247]
 gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
 gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           91]
 gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           B7210]
 gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           NCTC 13177]
 gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243]
 gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668]
 gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247]
 gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305]
 gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280]
 gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13]
 gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576]
 gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20]
          Length = 333

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +                +  L +   +  S                L+ N
Sbjct: 2   ARAVHACAADTAGGDAGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322


>gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378]
          Length = 300

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVE 124
             L   +    H   + + ++  ++E+      R   +    +      +  +   + ++
Sbjct: 5   GQLEKRFLDYLHSERNYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 65  QKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 124

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
              E       + R+  E L  +G+R S+     +  L  +  +I    K      V   
Sbjct: 125 VVYEDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFG 184

Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 +                  +   IN+    +             +KA +     
Sbjct: 185 AYAEDAITDYLSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTKIISKASLTRKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 245 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|291544229|emb|CBL17338.1| Integrase [Ruminococcus sp. 18P13]
          Length = 368

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 106/344 (30%), Gaps = 40/344 (11%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           V K+ ++  ++IY +   +G  ++ +           A+         + +   +     
Sbjct: 3   VYKDGSK-WRVIYRYTDSRGERKQTQKRGFSTKKEAQAW--------EREQMNKTESSLD 53

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126
            T +     Y +      L  N+  + E     ++I   G      I  K + +      
Sbjct: 54  MTFESFSEIYFEDMK-KRLKDNTWHTKEHILRTKLIPFFGKRKMCDIQPKDVIAWQNEML 112

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKE 177
                    ++P         +  +F +AV+   +  NP        +        WT+E
Sbjct: 113 EGSTKTGKPYSPVYLKTLHNQLSAVFNYAVKFYGLPSNPAAKAGNMGKAKNREMLFWTQE 172

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           + +QF     +      AFE L + G+R  +              ++   K+        
Sbjct: 173 EYKQFAEVMMDKPVSFYAFEMLYWCGIREGELLALTPADFDFEKQTVSITKSYQRIKGQD 232

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                        V++PD   + +            ++    +  +         A ++G
Sbjct: 233 IITDPKTAKSNRVVKMPDFLSQEIQDFISQLYGIGEHDRMFMITKSYLHHEMDRGAKESG 292

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V +   H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 293 VKRIRIHDLRHSHISLLIEMGFSAVAIADRVGHESIDITYRYAH 336


>gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 98/267 (36%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH-- 128
           I+ +          A+N++ ++     +++  +       +  ++++++   V + +H  
Sbjct: 5   INRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQN 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +  +  + L+S+R    + V Q  + +N    ++ PK      +    E + Q  +   
Sbjct: 65  ISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQMLTPKS 124

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PD 239
                 +     E L   GLR S+     ++ +  +   ++    G+ +           
Sbjct: 125 SAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGESAQK 184

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
              + L  T    +  F+NN +++++        K +A   G+      H +R  +AT  
Sbjct: 185 SINRYLQKTSHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHF 244

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             +      +    G K++   + YT 
Sbjct: 245 LQSSHDLRSVQEFLGHKSIKSTQVYTH 271


>gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 365

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 94/345 (27%), Gaps = 33/345 (9%)

Query: 34  RLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           R   P  +    A    + G              R+K  T+  L   Y +         +
Sbjct: 21  RHGSPWTTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATK-KAS 79

Query: 91  SRI-SFESYFDQIIRKSGDFDYRKITTKHIRS----------------GVESRKHTPSSA 133
           +           I    GD     I   H+R+                 V  +     +A
Sbjct: 80  TIATDKGRIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVADKLGGKGTA 139

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSE 188
            + +  +  +F +A    Y   NP   V+R   +         E  + F+          
Sbjct: 140 SRTVGLLGGIFSFANELGYRTDNPVHGVKRFPDQKNQRYLTQSELTRLFELLEEIEADGA 199

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +     + L  +G R  +  +     +     ++  + + T          +  L   
Sbjct: 200 NPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQKSIPISAAVIGLLRE 259

Query: 249 PIGKETFFINNDKQKMNATQFS----IWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
              +                F       ++   TK G  K   H +R   A+++   GA+
Sbjct: 260 AEQERCIDSPYVFPSERGDGFYVGATKVWRDLRTKFGDEKLRMHDLRHSFASLAVAGGAS 319

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVVDSD 346
              + A  G K     + Y    AD +R        ++    D +
Sbjct: 320 LPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKLLGTDDGN 364


>gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304]
 gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579]
          Length = 305

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VSLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011]
          Length = 344

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 43/302 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHT 129
           L+  + +       L+ ++ +++     Q +      G  +   +T   +R  +    HT
Sbjct: 39  LMERFIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHT 98

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------- 178
              +S  +   ++R  F WA     +A NP  ++  PK          ++          
Sbjct: 99  VGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVD 158

Query: 179 -----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
                           +  ++  +     E L  +G+R  +     +     +  +++  
Sbjct: 159 AEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVL 218

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAK 276
            K      +       + +     G    F N +            +++          +
Sbjct: 219 GKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQ 278

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIR 330
           A +AGV   S H +R  +AT   D GA   E+    G  ++   + Y   +     DR R
Sbjct: 279 AEQAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYR 338

Query: 331 LG 332
             
Sbjct: 339 QA 340


>gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
 gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH]
          Length = 333

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +                +  L +   +  S                L+ N
Sbjct: 2   ARAVHACAADTAGGDAGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322


>gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC
 gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 300

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 27/273 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPS 131
           Y  S    + +VN+  ++E+      R   +    +      +  +   + ++ +  + +
Sbjct: 14  YLHSE--RNYSVNTSTAYENDILDFRRFLNEQAISEYQQVTFLDVRIYLTELKQKSFSRT 71

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  + ++S+R  + + +R+  ++ NP   V   K +    + +  E+M+       E   
Sbjct: 72  TVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNE 131

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
               + R+  E L  +G+R S+     +  L  +  +I    K      V         +
Sbjct: 132 TLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGNKERYVPFGAYAEDAI 191

Query: 246 AMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
                             ++  IN+    +             +KA +      H +R  
Sbjct: 192 TDYLSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHT 251

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   + GA    +    G  ++   + YT  
Sbjct: 252 FATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
 gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3]
          Length = 304

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            + + N+R S+ +   + +    +      +IT+K I   +          +S  + +++
Sbjct: 23  RNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNIST 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192
           +R   K+   +   + NP   +  PK+           +           +   +   + 
Sbjct: 83  IRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRD 142

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGF 241
           R   E L  +G+R ++      +HL ++   I+    G+            + V+     
Sbjct: 143 RAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKE 202

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
           +++  +     +  F+N+   K++        K  +  AG+ KS   H +R   AT   +
Sbjct: 203 LRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVAGITKSISPHTLRHTFATHLIE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSIVTTQIYTH 287


>gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 303

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 30/296 (10%)

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKH 118
              T +   I   + +      L+ N+  ++        +  G                H
Sbjct: 6   ASQTAIDAFIDALWLED----GLSRNTLAAYRRDLALYAQWLGQHAPDTAGALDATAEHH 61

Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +++   +R      +SA + LT +R  F+WA+R+  +  +P + ++  ++     +  + 
Sbjct: 62  LKAYFSARHAETRATSANRRLTVLRRYFQWALRERRIGADPTVRLQAARQPLRVPKTLSA 121

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++            G + R   E +  SGLR ++       H   +   ++    G+ 
Sbjct: 122 AQVEALLQAPDTSTPLGLRDRAMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSK 181

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                        ++      +   +     +  F+      M    F +  K  A  AG
Sbjct: 182 ERLVPFGEVAAQWMQRYLNEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAG 241

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +    S H +R   AT   + GA    +    G   +     YT  A      +  
Sbjct: 242 ITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHA 297


>gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLTFCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L        
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  K    +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573]
 gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573]
          Length = 402

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 111/351 (31%), Gaps = 28/351 (7%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61
            +     R G+  + FR    G  + I+L          A   A             + I
Sbjct: 43  GLKMIVNRQGRKRFLFRYTLHGTKKSIQLGEYPALDINTARQIANDHKREIALGNDPKAI 102

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              ++   T +      Y   A    L   +  S           K G      I  + I
Sbjct: 103 RDEKRNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYSKWGKKPLTDIGQQDI 159

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  ++       P++  +  + +  +F+ A+   YV  NP   + + K      R  ++ 
Sbjct: 160 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPGQYIRKLKENNVRQRFLSRA 219

Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230
           ++  F    +E        A +F L +G+R  +   +  + L      N    +   K+G
Sbjct: 220 EVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWECLTVDDDGNWSLFLPHTKSG 279

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285
              TV L     +++      ++                +     F      AG+  N  
Sbjct: 280 LSRTVLLNHLAKEVINDQRRFQQLKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 339

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            H +R   A+I  ++G AT +++    G ++   +  Y   A      +  
Sbjct: 340 IHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREVSA 390


>gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018]
 gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
 gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019]
          Length = 335

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 89/307 (28%), Gaps = 55/307 (17%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           I ++         L+  +  S+ES      + +       D  +IT   I   V +    
Sbjct: 13  IQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQ 72

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P +  + + S+    K+ +    +A +P   V+ PK+        +  ++++
Sbjct: 73  AMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVER 132

Query: 182 FKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
                       +   + R   EFL  +G R S++     + +      ++ + K     
Sbjct: 133 VIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQR 192

Query: 234 TVELPDGFMKLLAMT--------------------------------PIGKETFFINNDK 261
            V +    ++ L                                          F+N   
Sbjct: 193 LVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRG 252

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + ++              A + K    H +R   AT     GA    +    G  +V   
Sbjct: 253 KSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTT 312

Query: 320 ETYTKGA 326
           + YT  +
Sbjct: 313 QIYTHIS 319


>gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           1710b]
          Length = 305

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 25  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSS 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 81  NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 140

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 141 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 200

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 201 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 260

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 261 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 294


>gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431]
          Length = 282

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 20/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138
             L+  + ++++   + II  + +   +      +            +    +S    L+
Sbjct: 3   RQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLS 62

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           ++R  F W V Q  +  NP   V  PK      +    +DM +            + R  
Sbjct: 63  ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAM 122

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E +  +GLR S+     ++HL   +       K      + +    +  +      ++ 
Sbjct: 123 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 182

Query: 255 FFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           F   +D        ++++A      F     K G+  +   H +R   AT   ++     
Sbjct: 183 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 242

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332
            +    G   +   + YT   D   L 
Sbjct: 243 GVQELLGHANLSTTQIYTH-LDFQHLA 268


>gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 336

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E + Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
 gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52]
 gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587]
 gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51]
 gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2]
 gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226]
 gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385]
          Length = 311

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
 gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80]
          Length = 311

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
 gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577]
 gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290]
          Length = 331

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 96/304 (31%), Gaps = 31/304 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124
               +Y +S      + ++  ++++   + ++   +                +   +G+ 
Sbjct: 29  DWFLKYLRSE--RHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSFDVESYLTGLY 86

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +K+  +S  Q ++++R  + + ++ E +  NP   V    +     R +   +MQ   S
Sbjct: 87  DKKYARNSIAQKVSALRSFYGFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALFS 146

Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227
              +G +          E    +G+R S+     ++ +                  +   
Sbjct: 147 AAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYVPFG 206

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NK 284
           +              + L      K  + F+N+  + + +            ++ +  N 
Sbjct: 207 EPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEYILNGIIKQSSLTTNI 266

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R   AT   + GA    +    G  ++   + YT    +  L     +       
Sbjct: 267 HPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVT-KSHLMNDYQKYFPRNNQ 325

Query: 345 SDDP 348
           S  P
Sbjct: 326 SLKP 329


>gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC
 gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 299

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 28/298 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES 125
           +  Y         ++ ++  ++     +++            D D + + +   R     
Sbjct: 5   LDAYCMHLRSERQVSPHTLEAYRRDLSKVLAYCQKAQRSSWNDLDIQHLRSFTARQH--Q 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q    
Sbjct: 63  QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
             E      + +   E L  SGLR S+     +  L           K      + +   
Sbjct: 123 GVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSK 182

Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKF 292
             + L +            +  F++   +++      +  KA   +  G N   H +R  
Sbjct: 183 ARQALEIWLPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            A+   ++      +    G   +   + YT   D   L         R      +DD
Sbjct: 243 FASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 299


>gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 83/266 (31%), Gaps = 15/266 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S
Sbjct: 94  EGYLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVS 153

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++    +  + +         + R K         +K ++++         +
Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTVPEVLSKNEIKRILD-QLSNIK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246
                  +  +GLR S+      + + + + S++    G          +L +   +   
Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F      +  +A+      K  A +AG+    H   +R   AT   + G   
Sbjct: 270 EYRPKKWLFEGETPGEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
           H +    G   +     Y   ++  +
Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSNAHK 355


>gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L        
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  K    +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
 gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325]
          Length = 296

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 93/272 (34%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
           L+ +Y         ++ ++  +++   ++I++     G   ++++T   +R  +     T
Sbjct: 4   LLEKYWNYLRIERQVSPHTLSNYQRQLNRIVQILNENGMTSWQEVTPSVVRFILAESSKT 63

Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S    L+++R    + V+Q+ + +N    +  PK+     +    E +Q+  S 
Sbjct: 64  DKLHEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN 123

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + R   E L  SGLR S+     +  +   +  ++          V      
Sbjct: 124 DSKEPIDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYA 183

Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
              +              +  F++    ++         +    K G+  + + H +R  
Sbjct: 184 SHAIQQWLKVRLLFNPKDDALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSHLNPHKLRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   +A +    +    G   +   + YT 
Sbjct: 244 FATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275


>gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii
           NGR234]
 gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234]
          Length = 310

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 79/283 (27%), Gaps = 29/283 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            +  S A    L+  +  ++E    Q +    G         D R +    +R  +  R+
Sbjct: 18  RWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADIRTLRPADLRGFLAQRR 77

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              + A      L  +R   ++  +          +V  PK+     +P T  D  +  +
Sbjct: 78  KAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPKSLPKPLTDRDALEVVT 137

Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                       ++       L   GLR S++                T K G    V L
Sbjct: 138 ADAQLAEEPWIAARNAAVLTLLYGCGLRISEALDLTPDDFSGAASLRITGKGGKTRIVPL 197

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288
                  +A             +     A              +   +  G+    + H 
Sbjct: 198 IAAATGAVATYRKLCPYHIGPGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPHA 257

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 258 LRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 299


>gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           syringae B728a]
 gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC
 gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 85/281 (30%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVE 124
              +  Y         ++ ++  ++     +++           +   I+      +   
Sbjct: 2   DQHLDAYCMHLRSERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQH 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +  S  + L+++R  +K+  R+     +P   +  PK +    +    +   Q   
Sbjct: 62  QQGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLD 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
              E      + +   E L  SGLR S+     +  L           K      + +  
Sbjct: 122 GGVEDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGS 181

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRK 291
              + L +            +  F++   +++      +  KA   +  G N   H +R 
Sbjct: 182 KARQALEVWLPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             A+   ++      +    G   +   + YT   D   L 
Sbjct: 242 SFASHLLESSQDLRAVQELLGHADIKTTQIYTH-LDFQHLA 281


>gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae L20]
 gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 336

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E + Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
 gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551]
          Length = 300

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 97/289 (33%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGV 123
           +K +++ + +      + +  +   +E      +    +   + +        +   + +
Sbjct: 4   VKDVLNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFMQEEQIQNLQSVTYADARLFLTRL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
             ++++  S  + ++ +R  +++  R+E V  NP   V  PK++    R   +E+     
Sbjct: 64  YEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKLF 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q        G + +   E L  +G+R S+     +  +  ++ ++     G         
Sbjct: 124 QMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLVYGKGKKQRYVPFG 183

Query: 240 GFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284
            + K             LL   P    + F+N     +      +       K    ++ 
Sbjct: 184 CYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKTAENIHI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           S H +R   AT   + GA    +    G + +   + YT         +
Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAV 292


>gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 295

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 27/274 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR----KHTPS 131
           + K     + + ++  ++E      +        D R I    +R  +  R    + + S
Sbjct: 2   WLKERKIQNQSEHTITAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQDQLSSS 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + LTS+R   KWA + +Y+ INP    +  ++          E + Q          
Sbjct: 62  SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  SGLR ++     V+ +  N   ++          V       
Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPFGKKAK 181

Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L       + +  + D+                Q     K +A +AGV  +   H +R
Sbjct: 182 ESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G   +   + YT 
Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275


>gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato K40]
 gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+     +P   +  PK +    +    +   Q      E      + + 
Sbjct: 67  AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E L  SGLR S+     +  L           K      + +     + L        
Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F++   +++      +  K    +  G N   H +R   A+   ++     
Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDSAHPRAKRKGAADD 290


>gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138
             ++ ++  ++     +++               I+      +    +  +  S  + L+
Sbjct: 7   RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNELDIQHLRSFTARQHQQGQSSRSLARMLS 66

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194
           ++R  +K+  R+   A +P   +  PK +    +    +   Q      E      +   
Sbjct: 67  AVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDHA 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E    SGLR S+     +  L  +        K      + +     + L        
Sbjct: 127 ILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVGSKARRALETWLPLRA 186

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAH 305
                 +  F+    +++      +  KA   +  G N   H +R   A+   ++     
Sbjct: 187 LANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            +    G   +   + YT   D   L         R      +DD
Sbjct: 247 AVQELLGHADIKTTQIYTH-LDFQHLATVYDNAHPRAKRKGSADD 290


>gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199]
 gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 94/310 (30%), Gaps = 34/310 (10%)

Query: 55  TPKREYINSPRKKPTT-----LKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIR 104
                 ++ P    TT     L   I+++R+       ++ ++  ++        + +  
Sbjct: 1   MAAPARLSDPLDPATTPVDAGLAGAIADWREWLKSEKRVSPHTLAAYGRDLGGFVNFLAG 60

Query: 105 KSGDF----DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157
             GD         +     R+ +  R       SS  + L+++R  F++  R+   +   
Sbjct: 61  HLGDTVNLSALGTLQPADFRAWLARRAGGGLEKSSTARALSTIRGFFRFLERRGLASNAA 120

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSC 210
              V  P+      +  T ++ +                ++       L   GLR  ++ 
Sbjct: 121 VGVVRGPRVPRSIPKALTVDEARDALESVGELTDEPWIAARDSAVLTLLYGCGLRVGEAL 180

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QK 263
               + +  +     T K G    V +     + +A            +D         +
Sbjct: 181 DLNRRVVPLSDTLTITGKGGKARMVPVLPVVRRAVADYLERCPYRLGPDDPLFVGVRGGR 240

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + A +     +      G+    + H +R   AT     G     +    G  ++   + 
Sbjct: 241 LGARRVQQSIQTLRCWLGLPETATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQR 300

Query: 322 YTKGADRIRL 331
           YT   D  RL
Sbjct: 301 YT-EVDAARL 309


>gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
 gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3]
          Length = 342

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 99/341 (29%), Gaps = 21/341 (6%)

Query: 15  RTRHG-KIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + G K +   R     G+R R     + +   AY   +  +   +E++  P  K   L
Sbjct: 3   VKKDGEKWLVDLRPSGRSGKRFR-RKFDKKSEALAYEKHILSTHHNKEWLGLPDDKRL-L 60

Query: 72  KWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             L+   + KS         +  ++    D + R+ G+    KI    + +   +R    
Sbjct: 61  SELVEIWWIKSGQLK----RTASNYRKKLDLVCRELGNPPVNKINNAMVSNWQLNRMSKG 116

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            SA       + +  +F   +             +++P      +   T   +    S  
Sbjct: 117 QSANTVRRLTSCLSNVFTVLIETGDFNAPHPLKDLKQPAPNRSEMTYLTTYQIDALLSAV 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +     +  L +G R  ++      +L          KTG   TV + +   K L 
Sbjct: 177 QSHPELSKIVDICLSTGSRWRETVTLKPMNLSPYRIRFTNTKTGKPRTVPISEELYKKLQ 236

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
               G    +    +                      +  H +R   A+     G     
Sbjct: 237 TNVSGNLFSYDPQKELYEIMDSLEFNLPK-------GQKVHVLRHTFASHFIMNGGNILT 289

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           L    G  ++ Q   Y   A    +       +S + D  +
Sbjct: 290 LKEILGHASITQTMAYAHLAPDHLIDAVKLNPLSRLRDPQN 330


>gi|121595275|ref|YP_987171.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120607355|gb|ABM43095.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 444

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 111/356 (31%), Gaps = 25/356 (7%)

Query: 9   PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59
           P    + T  G+ I    Y    G  R+ R+    E T   A   A       R+     
Sbjct: 29  PGFLCKVTASGRKIFMLHYRTNSGERRKPRIGRFGELTVEQARSIAQDWMADVRKGSDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
                 ++  T+K L +++ +         ++  +++ + ++ I+ K G     ++T   
Sbjct: 89  AAKQAARQAPTVKELCTQFIEEYSKTRNKPSTVATYQDHINRYIVPKLGKIKVPELTRVD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   +       S+A + L  +R +F  A    Y           PK +  G   +  ++
Sbjct: 149 VAEVMRDMAKISSTANRTLACLRKMFNMAEVWGYRPDGSNPCRHVPKYRENGETRYITDE 208

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
                  + + +         L   +R      A +  ++   ++    +          
Sbjct: 209 ELARLYAYLDRADAEGLEHPTLTLAIRLQFEFSARMSEIRTLQWAWIDFENRRVAWPDSK 268

Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  ++            +         I +    + +  +   ++    +A V   
Sbjct: 269 TGGISKPMSEVAHQLLSNAERIEDSPYVCPSIYDGNLPLPSGTYYNSWRRILLRAKVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339
             HG+R  +AT  A++G      MA    KTV     Y    D  +R   +    +
Sbjct: 329 GTHGIRHRAATDIANSGVPLKVGMALTAHKTVSMFMRYVHAEDDPVRAAAEKVAAL 384


>gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18]
 gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18]
          Length = 304

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 107/297 (36%), Gaps = 28/297 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR-- 126
           L+ L + +  +      L+ N+  ++            G  +   +TT+H+R  +ES   
Sbjct: 3   LRRLTASFLDTCAVERQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRDYLESMMV 62

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +PS+  + +  +R  F++   +  +         +  R+    R  ++E+  Q  +
Sbjct: 63  ARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKRLPRALSREEANQLLT 122

Query: 185 FWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
                   R          +    ++ +G+R  + C+     + ++  S++    G+   
Sbjct: 123 SARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLRIHGKGSRDR 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAGVNK- 284
           +           L      ++     +    +N          F    +  A +AG+ + 
Sbjct: 183 VVYVSNPALRNELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKLRNFAGQAGLRRR 242

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339
            + H +R  +AT+  ++G     +    G  ++   E YT  +D   R  ++ +  +
Sbjct: 243 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRKSLERANVL 299


>gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 307

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 92/287 (32%), Gaps = 33/287 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140
            SL+  +  ++     Q        + +   I  + IR+ + +  H   P +  + L ++
Sbjct: 18  RSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDKESIRTYLSNINHNYKPKTLKRKLATL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTE---------------GIRPWTKEDMQQFKSF 185
           +  F +  R++ +  +P   +     +++                     KE        
Sbjct: 78  KSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRILKYAYLEKEKFDHKSKA 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMK 243
           + E ++     E L  +G+R S+ C      +      +          +     +  +K
Sbjct: 138 YREITRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIINGKGNKQRLIPLCENNSLK 197

Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
           +L    +  +    ++           ++        K  +  AGV    + H  R   A
Sbjct: 198 ILKEYSLLYQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYSEIAGVTETITPHMFRHTIA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338
           T+  + G     +    G  ++   E YT     + R  L  K+ RR
Sbjct: 258 TMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRR 304


>gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
 gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 84/275 (30%), Gaps = 17/275 (6%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130
            +  + +       ++ ++  ++    D +   +         +  + +R  V       
Sbjct: 3   AVQAFLQHLQVERRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRG 62

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KS 184
            SA    + L++ R  + W ++   + ++P  +++ P+      +    ++  Q    + 
Sbjct: 63  LSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEP 122

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+ C    + L           K      V       +
Sbjct: 123 EGELGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPARE 182

Query: 244 LLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            L            +         ++     I  +  A + G+  +   H +R   A+  
Sbjct: 183 ALQAWRAESGGGPASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHI 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 243 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 276


>gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 301

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 28/278 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I+EY +      +L   +  ++ +   Q    S     + I   +I  G   R+  P +A
Sbjct: 7   ITEYLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYI--GCLHRQFKPKTA 64

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--------------GIRPWTKEDM 179
            + + S++    + + QE +  NP   ++   R+                    +     
Sbjct: 65  RRKIASLKAFAHYLMIQEIINANPFDKIDTSFREPMVLPKVIPMNIISEILANAYDVFCQ 124

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVEL 237
                      +     E L  +G R S+ C      +     +IK         I    
Sbjct: 125 CNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFGKGSRERIIQIE 184

Query: 238 PDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
               ++ L                FF+N   Q++      +    +A   G NK  + H 
Sbjct: 185 NPDVLEALNRYYETFRSDILESGFFFVNKLHQRLTEQSVRVMISNQAAAIGYNKHITPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            R   AT+  +       +    G  ++   + YT  +
Sbjct: 245 FRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVS 282


>gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
 gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC
 gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18]
          Length = 305

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 313

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 93/287 (32%), Gaps = 28/287 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR-- 126
             L+ ++         L+  S  ++     Q                 + +R  ++S   
Sbjct: 8   DRLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDSLFS 67

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
            +    +  + L+S R  +K+ +    +  +P L++E P++     +  + +++ Q    
Sbjct: 68  NQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQG 127

Query: 185 ---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234
                      +   + R   E      LR S+     ++  + +  + +   K      
Sbjct: 128 PPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERI 187

Query: 235 VE----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           V                 + +          F+    +K++  +      A +  +G + 
Sbjct: 188 VPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASGRHA 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           S H +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLK 294


>gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
 gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein
           [Parvularcula bermudensis HTCC2503]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS 131
           +  +          +  +  ++    +++            + T   + + ++       
Sbjct: 12  LDLFLDMMAVERGASPRTLRNYGRDLERVSVFLFQRGTSLLRATAADLSAYIDHLHGQGR 71

Query: 132 SAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183
           SA      L+++R  + +A  +     NP   V+RPK +    +  + ++          
Sbjct: 72  SAATAALCLSALRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLDLARD 131

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                     +     E L  +GLR S+ C      ++    +     K      V L D
Sbjct: 132 EAACMKPGPLRLHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLVPLTD 191

Query: 240 GFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           G +  ++     +          F        +   + +   K  + +AG++    S H 
Sbjct: 192 GAVMAVSHYVAVQTDAERASAFLFPSRGKTGHITTARVAQLLKELSARAGIDPTRVSPHV 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+   + GA    +    G   +   + YT 
Sbjct: 252 LRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTH 287


>gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC
           10229]
 gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
 gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229]
 gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237]
 gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399]
          Length = 329

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 49  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 104

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318


>gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 361

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 98/342 (28%), Gaps = 24/342 (7%)

Query: 11  VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +TK +   G +     R               T    +      +  +         +  
Sbjct: 4   ITKLQRPSGTVYKARVRLIGQDGETSRTFKTRTAAERWARKFEAAALEDRAGLIMEGQKH 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TLK  I  YR           +R ++    D    + G      +T   I    +    +
Sbjct: 64  TLKDAIKRYRTEI-LPDHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDELLTS 122

Query: 130 --PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P++   +L  +  +      R  +V  +P   V++P       R  +++++ +     
Sbjct: 123 KAPATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLLEAC 182

Query: 187 S--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELP 238
              E     LA    + +G R  +      + +      +  +             V + 
Sbjct: 183 RASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAVRIA 242

Query: 239 DGFMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                +L     G                 +             F+    +AG+     H
Sbjct: 243 SQVKPILEARQAGYRRGKVADITGAALVFPSRVSTRQPVDLRTPFRTALRRAGIEGFRWH 302

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R  +A+  A  GA+  E+ A  G ++    + Y   A++ 
Sbjct: 303 DLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQA 344


>gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 377

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 109/357 (30%), Gaps = 44/357 (12%)

Query: 11  VTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V K R + GK+I Y   +    G+R  +    ++        A+  +     +       
Sbjct: 13  VYKRRNKDGKVIGYRGSYFAPDGKRRYVSGKTKTEAQRLLRQAMADADRGLVF----DAG 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T+   +  + + +   ++   +   +E      I    G      +T  H+R     R
Sbjct: 69  KLTVGEYLDRWLEDSVRDTVRQRTYERYEQISRVHIKPALGRIKLAALTPVHVRGLYRER 128

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  +     T++    + AV    +  N   +V+ P  +   IRP ++E  ++F 
Sbjct: 129 LDAGLSSRTVRYIHTTLHKALEAAVVDGLIPRNVASTVKAPCPRGPDIRPLSQEQSRKFL 188

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQK 228
               E  +    +   L+ GLR  +      + +                      +  K
Sbjct: 189 EVARED-RFYALYVLALHCGLREGELLGLKWEDVDLEGGTLQVRRTLSETRTGHKFELPK 247

Query: 229 TGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWF 273
            G   +++L    ++ L      +                 F                 F
Sbjct: 248 NGKGRSIKLSRRAVEALRSHRRRQNEERLRVGSLWQDNDLVFPTTTGTTMRATNLLGRHF 307

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
           K    KAG+     H +R   ATI   AG     +    G  ++    + Y+   +R
Sbjct: 308 KPLLEKAGLPAIRLHDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHVIER 364


>gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
 gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060]
          Length = 308

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 90/284 (31%), Gaps = 28/284 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRK 127
           L+  Y          + N+  ++    D  +        D   +    IR+ +   ++R 
Sbjct: 11  LMQPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEAPMIRAYMADLDARG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SSA + L+ +R   ++   + Y   +P   V  PKR     +  +  ++ +  S   
Sbjct: 71  LKASSAARRLSCIRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLLSVAK 130

Query: 188 EG-------------SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTII 233
           E               +     E L  +GLR S+         L    + +   K G   
Sbjct: 131 EAVAQAPNLSEAARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKGGRER 190

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
            V L +     +A             F  +++   +    F+   K  A  AG+     S
Sbjct: 191 LVPLTEAARAAMAAHLTMLAAPGPWLFPADSESGHLTRQAFARDLKLAAAAAGIRADRVS 250

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 251 PHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDER 294


>gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
 gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU]
 gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4]
          Length = 329

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 49  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 104

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318


>gi|330825567|ref|YP_004388870.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329310939|gb|AEB85354.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 401

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 107/356 (30%), Gaps = 25/356 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+ ++  +        R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKITPTGRKVFMVQYRTNSGVRRKPALGQFGELTVEQARSLAQDWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116
                +  +K  T K L   +           +++  ++   D   I   G     ++T 
Sbjct: 87  PGLDKAEARKAPTAKELCGRFMDDHSKPHNKPSTQAGYQYQIDSFVIPAFGSKKVHEVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I + ++  + +P+ A + L+ +R +F  A    Y           PK   +G      
Sbjct: 147 HDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206

Query: 177 EDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++       +         E     LA         R S+        L      +    
Sbjct: 207 DEQMVKLFAYLDKAEVDGLEHPIHLLAVRLQFEFAARMSEVLLLRWHWLDLPNGRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + T    +      + L                I + K+ ++   +   ++    +AGV 
Sbjct: 267 SKTGDMSKPLSAEARRLLESAPHYGDSPYVCPAILDHKRPLSPHSYYQAWRRILDRAGVP 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           K   HG+R  SAT  A++G      MA    KTV     Y    D  +R   +   
Sbjct: 327 KVGTHGIRHRSATDIANSGVPLKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVA 382


>gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 78/293 (26%), Gaps = 33/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRS 121
           L  L   +         ++  +  ++     Q +       G       + ++T   +R+
Sbjct: 20  LAGLAEAWLLHLSGERRVSALTAEAYARDLRQFLAFLAEHFGGAPSLETFAELTPADLRA 79

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++      S  + L  +R   ++  R+         +V  PK      +P     
Sbjct: 80  FMTARRNQDVGSRSLSRQLAGLRSFARFLEREGKGKALVFSAVRTPKLARHLPKPLNPTA 139

Query: 179 MQQFKSFWSEGSQPRLAFE---FLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQ 227
             +     +     R A+         GL      R             +        T 
Sbjct: 140 ACEVVDVANRTDTERPAWVLARDAAVLGLLYGAGLRISEALSLTRREAPIGETDALTVTG 199

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA 280
           K      V + +   + +                         ++     +  +      
Sbjct: 200 KGRKTRMVPIIEPVRRGIESYLALCPYPLPPQGPLFVGAKGGPLSPRIIQLAVEQMRGAL 259

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+ K  + H +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 260 GLPKSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYT-AVDSERL 311


>gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
 gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96]
          Length = 302

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 90/280 (32%), Gaps = 22/280 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
           L   +++       + ++  +++     + R   D        +    IR+ + SR    
Sbjct: 9   LADFFKQLTVEVRASEHTVKNYQRDLKHLSRYCTDKPITRWADLKHTDIRAHIASRHRKG 68

Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+    + L+++R  + + +++    +NP   ++ PK+  +  +    + +       +
Sbjct: 69  LSSKSLQRELSAIRSFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTLDVDQLSGLLEAGA 128

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242
                 +    FE    SGLR S+     +  L     +  ++  K G    + +    +
Sbjct: 129 SSLLEIRDLAMFELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSRVLPVGSKAV 188

Query: 243 KLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             +      +       +          ++      +  +      G+  +   H +R  
Sbjct: 189 TAIENWLQQRAVKIPAIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAEHIHPHMLRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A+   ++      +    G   +   + YT   D   L 
Sbjct: 249 FASHLLESSHDLRAVQELLGHSNISTTQIYTH-LDFQHLA 287


>gi|220935034|ref|YP_002513933.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996344|gb|ACL72946.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 401

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 113/368 (30%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKVTPTGRKVFMLQYRTNSGVRRKPSLGQFGELTVEQARSLAQDWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116
                +  +K  T+K L   +           +++  ++   D   I   G     ++T 
Sbjct: 87  PGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAFGTKKVHEVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I + ++  + +P+ A + L+ +R +F  A    Y           PK   +G      
Sbjct: 147 NDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------IFS 223
           +D       + + ++       +L   +R      A +  +                   
Sbjct: 207 DDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KT      ++ E                    I + +Q ++   +   ++   + AGV 
Sbjct: 267 SKTGDMSKPLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQGWRRILSNAGVP 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR-RIS 340
           K   HG+R  SAT  A++G      MA    KTV     Y    D  +R   +    R  
Sbjct: 327 KVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVATRRQ 386

Query: 341 SVVDSDDP 348
           ++     P
Sbjct: 387 TITGKRQP 394


>gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 308

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 28/284 (9%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           TL+  I  Y +       L   +  +++    Q   +    +   ITT  + S + +   
Sbjct: 3   TLETRIKNYIEYCTAQKRLDTKTLKAYKIDLRQFSEQISITEIEYITTSVLESYITNLHQ 62

Query: 128 -HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175
            ++P S  + + S++  F +   +   +         + +      +             
Sbjct: 63  QYSPKSVKRKIASIKAFFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLKTLEVLFNA 122

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTG 230
              K           +  +     E L  +G+R S+ C        LQNNI  I  + + 
Sbjct: 123 AYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNIILIHGKGSK 182

Query: 231 TIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             +        + +L                FF+NN   +++              A ++
Sbjct: 183 ERLIHICDPNVLNILNQYYTEYYSQISACGYFFVNNTGNRLSDQSVRDMINKYCRIADID 242

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              + H  R   AT   +       +    G  +++  E YT  
Sbjct: 243 YHITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHV 286


>gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
 gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)]
          Length = 311

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQAHPRARKKN 308

Query: 345 SDD 347
            DD
Sbjct: 309 KDD 311


>gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria
           MC40-6]
 gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M         K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 281

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 13/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I+ Y  +     L++ + ++++                 I    +R  +  R  K   SS
Sbjct: 9   IAIYLAAKKLDGLSLKTLLNYKYNLAIFADYL-RKPLATINAMDLRIFLAQRCKKMKASS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               ++ ++  F W   +EY+  NP L +++ K+     R   +E+++  +       + 
Sbjct: 68  VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEELELLRQACKTN-RE 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +   EFL+ +G R S+        +  N  S     K      V        LL      
Sbjct: 127 KALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKVYFDVKTKILLKKYLAI 186

Query: 252 KETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           +                ++         K  A + G  KS   H  R   AT   ++G  
Sbjct: 187 RNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRHSFATGKINSGMP 246

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              L    G +     + Y + ++ 
Sbjct: 247 LPVLQHIMGHENPATTQIYAELSEE 271


>gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas
           maltophilia R551-3]
 gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3]
          Length = 325

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 96/318 (30%), Gaps = 39/318 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD- 110
               +        +   +L+  I  +  +      LA  +  S+    + + R +   + 
Sbjct: 8   AERRQLVQQLPELRADDSLR--IQRFLDAIWAENGLARATLDSYRRDLEGLARWTDGREG 65

Query: 111 -YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               I    +   +  R     +P S  + L+++R  F   VR+   + +P   ++ PK 
Sbjct: 66  GLAGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGDRSEDPSALLDPPKL 125

Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                +   +  +    +        G + R   E +  +GLR S+        +     
Sbjct: 126 PRLLPKALAESQIDALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVLLPATAVNLRQG 185

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-----------------FINNDKQKM 264
            ++          V L +     L                           FI      +
Sbjct: 186 VLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGKVQALADGQTPLFIEPTLHAL 245

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
               F    K  A  AG++    S H +R   AT   + GA    L    G  ++   + 
Sbjct: 246 TRQAFWHLVKRHAQVAGIDPARISPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQI 305

Query: 322 YTKGADRIRLGIKNSRRI 339
           YT       +  ++ +++
Sbjct: 306 YT------LVAREHLQKL 317


>gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 90/300 (30%), Gaps = 31/300 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDF----DYRKITTKHI 119
            T+     ++ +       ++  +  ++      Y   + +  G      D   +T+  I
Sbjct: 1   MTIDDARLQWLQYLKAQKRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADI 60

Query: 120 RSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           R  +   +      +  S  Q L++++    +       A    +  + P+ KT   RP 
Sbjct: 61  RGWMAYLRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQVVLTQGPRLKTSLPRPL 120

Query: 175 TKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            ++  Q               E ++ R     L   GLR S++     +           
Sbjct: 121 NEDQAQGLLTEIELDGDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAETLRIV 180

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK 279
            K      V + +   + +      +          F       ++     +  +   ++
Sbjct: 181 GKGNKTRLVPVLEAVREAVDTYRRLQPFTLTEEDALFRAPRGGPLSPRHVQLSVQHLRSR 240

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            G+    + H +R   AT    +GA    +    G  ++   + YT+      L    + 
Sbjct: 241 LGLSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAA 300


>gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 302

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 21/277 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----- 125
              +   Y  S    + + N+  ++ S   +      +        K       S     
Sbjct: 26  FNKIKESYITSLKNNNYSQNTIKTYSSIIHKFTTYLKNQ-IAIYNEKEFIKYFNSYILYL 84

Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTK 176
           ++    S          ++   ++       +I     ++ P          + +   T 
Sbjct: 85  KQVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITW 144

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233
           ++            + +L    L  SGLR S+     V ++      +            
Sbjct: 145 DENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLSVDNVNFEGKQLSIVGKNNSRVIL 204

Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                     K L           +N     +      +  K    ++G+ K  + H +R
Sbjct: 205 LDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHILR 264

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              AT   + G     +    G   +   + Y++ A+
Sbjct: 265 HSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301


>gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 97/269 (36%), Gaps = 26/269 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137
            SL+ NS  ++     +               ++   HI+     +       SS  + L
Sbjct: 18  RSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKLGIAASSQARIL 77

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193
           + ++  +K+ + +E +  +P ++V  P+   +     + ++++   +       EG++ R
Sbjct: 78  SGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDLSTPEGARNR 137

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT---- 248
              E L  SGLR ++     + +L  +I  ++          V +     + L       
Sbjct: 138 AMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREAARYLISYIENI 197

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                  P  ++  F+N    K++     +  K  A  A + K  S H  R   AT    
Sbjct: 198 RSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNISPHTFRHSFATHLIL 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
            GA    +    G + +   E Y K  D+
Sbjct: 258 GGANIKAVQEMLGHENITTTEIY-KRLDQ 285


>gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896]
          Length = 307

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 99/289 (34%), Gaps = 29/289 (10%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126
           L+ L+ EY K     + L   +  S++    Q    + K  ++  ++I  K+I     ++
Sbjct: 3   LENLVDEYLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLH-TK 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRKTEGIRPWTKEDMQ 180
            +   +  + + +++  F + V ++ +  NP + +           KT  I         
Sbjct: 62  DYRVKTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTIPIVYLENLFKC 121

Query: 181 QFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--T 229
            +    +           S+  +  E L+ +G+R S+ C    + +  +   I+      
Sbjct: 122 LYDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERMIRIYGKGD 181

Query: 230 GTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              I     +   K +           K  FFIN    K++        K    KA +  
Sbjct: 182 KERILPVYNENLWKEIKQYEELFGLEIKGYFFINRINNKLSDQSVRNMIKKNCKKASIPI 241

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + H  R   AT+  +    +  +    G  ++   + YT      ++
Sbjct: 242 NITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKI 290


>gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC
 gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491]
 gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594]
          Length = 305

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3]
 gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3]
 gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2]
          Length = 369

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 28/357 (7%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R+    ++  F+   G+ +R      + +  A            +        P T + 
Sbjct: 4   KRNDSAYWWISFKSATGKLVR-RSSGTADYSAAKALEQQERAKAWKEKEMGVNPPRTFEE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           +I  Y + A     +  + +        +           +  + IR     R     +P
Sbjct: 63  VIIPYLQHARQHQRSYETTVHR---IKPLREYFAGRVVNDLGGQDIRGYGAHRLDAGASP 119

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187
           ++  + L ++         +   A+   +   + +      R  T+ +++          
Sbjct: 120 ATINRELAALSAAINHCNTELEWALPNPVKGRKMREAEGRDRWLTRAEVEALCRAARGQK 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243
            G          + +G R  +      + +      I       K G   ++ + +G M 
Sbjct: 180 FGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEGAMA 239

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGV-NKSAHGVRKFSATIS 297
            L      +             A    +      FK     A + + + H +R   A   
Sbjct: 240 ALKRRMAFRSETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCAAWL 299

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR-----RISSVVDSDDP 348
             AG    ++    G  TV   E Y   A  R+R  +         RIS  V +D+P
Sbjct: 300 VSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAVGVLDQVREGRISRSVHADNP 356


>gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           7894]
 gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           BCC215]
 gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
 gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346]
          Length = 333

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +                +  L +   +  S                L+ N
Sbjct: 2   ARAVHACAADTAGGDAGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 302 LLGHSDISTTQIYTHVA-RERL 322


>gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
 gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 104/295 (35%), Gaps = 28/295 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130
           +  + +      + A N+  ++E+                +  TT+ +++ + +   +  
Sbjct: 6   VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L+ +R  + + +R+   A NP   ++ PK +T   R  ++ ++    +  +E
Sbjct: 66  ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLNACAE 125

Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                      G   + A E L  SGLR S+      + +  +    +   K G    V 
Sbjct: 126 PDGASLPKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185

Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
           L D   +       +         F   +  + M    F       A +A ++    S H
Sbjct: 186 LSDSAREAAQALLEVDAHLESAFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISS 341
            +R   AT     GA    L    G   +   + YT    +R++  ++    +++
Sbjct: 246 VLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300


>gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
 gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 275

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 10/259 (3%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  + +      +L+  S  +++S    I +K        + T+ + S + S K+   + 
Sbjct: 5   LEAFLEYITVTRALSKKSVEAYKSDLCAIEKKL-SKPLICLDTQKLMSVLFSYKNK-RTL 62

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189
            + L+S+   F++  +Q +   +    ++  K      +  + ED+             G
Sbjct: 63  NRKLSSVNAFFEFCYKQHF--SSQKTKLKFAKIPKLLPKFLSYEDILSGLDLIDRTNWIG 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +      FL  SG R S+     +  ++     ++  K      V L     K +    
Sbjct: 121 KRDYALILFLYASGTRISECLELMLGDIEEGWLHVRHAKGEKERIVPLAKVAKKAVDEYM 180

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                                I       K  +  S H +R   AT     GA    +  
Sbjct: 181 FASAINKEYVWCNYQGGKLSRISAYKITQKY-LGVSPHVLRHSYATSLIRGGADLRVVQE 239

Query: 310 TYGWKTVDQAETYTKGADR 328
             G  ++   + YT    +
Sbjct: 240 LLGHASLLTTQIYTHIQKQ 258


>gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
 gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14]
          Length = 325

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 37/296 (12%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KH 128
           I  +  +      LA  +  S+    + + R     D     I    +   +  R     
Sbjct: 28  IQRFLDAIWAENGLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGW 87

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
           +P S  + L+++R  F   VR+   + +P   ++ PK      +   +  +    +    
Sbjct: 88  SPRSNARLLSALRAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDV 147

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
               G + R   E +  +GLR S+        +      I+          V L +    
Sbjct: 148 ERPLGLRDRAMLELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKERLVPLGEESQH 207

Query: 244 LLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAKATKAGVN--- 283
            L                           F+      +    F    K  A  AG++   
Sbjct: 208 WLERYLQQSRPQLVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPAR 267

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            S HG+R   AT   + GA    L    G  ++   + YT       +  ++ +++
Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT------LVAREHLQKL 317


>gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514]
 gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514]
          Length = 306

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 35/288 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK------- 117
           L+ ++ +        + +++ ++ +   + +            + + + +T         
Sbjct: 4   LVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERER 63

Query: 118 --HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              ++ G   RK +  S    + ++R  +K+A  ++ + +N   S+  P+R     +  +
Sbjct: 64  LVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKALS 123

Query: 176 KEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230
             ++ Q  +     +      +   E    SGLR ++     ++ L     F     K  
Sbjct: 124 DLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKGN 183

Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V +    ++ L             P      F+        A       K +  ++
Sbjct: 184 KERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKRS 243

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           GV  N + H +R   AT   + GA    +    G   +   E YT  +
Sbjct: 244 GVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVS 291


>gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130
           +Y       + +  +   + +   ++ R      GD     +  + +R  + S       
Sbjct: 9   DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPSDVDAELVREWIASLMDKGLA 66

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            ++  + L+S+R  +K+ +R+  VA++P   V  PK+K        + +M +        
Sbjct: 67  SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240
              EG +  +  E    +G+R S+      + +  +      T K      +   +    
Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293
              + + +              +K     +         +          +S H +R   
Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSKVVTVKKRSPHVLRHTF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT   + GA    +    G +++   E YT  
Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 327

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 101/285 (35%), Gaps = 24/285 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
             +IS++  +     L  +S   +       I   G    ++I T  +R  +  +K    
Sbjct: 41  SQIISKFFIAKAVEGLCQSSLDYYRVILRAFILHVG-KHIKEIVTDDVRVYLAYKKINKC 99

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++      ++   F W   +  +  NP L ++  ++  +  +P +++DM++     + 
Sbjct: 100 SDNTLNNIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSEDDMER-LRSLAR 158

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
             + +   EFL  +G R S+     +  +      I     G            K+    
Sbjct: 159 TKRNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIALQE 218

Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
                        L+      +     N   +++     I  +    KAG+ N   H +R
Sbjct: 219 YVDSRTDDLEALFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGISNVHPHRLR 278

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
           + +AT +   G    ++    G ++++    Y +   D ++L  +
Sbjct: 279 RTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHE 323


>gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
 gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319]
          Length = 300

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 97/289 (33%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGV 123
           +K +++ + +      + +  +   +E      +    +   + +        +   + +
Sbjct: 4   VKDVLNSFLEYLQIEKNYSKYTVDCYEKDIGIFMSFMQEEQIQNLQSVTYADARLFLTRL 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
             ++++  S  + ++ +R  +++  R+E V  NP   V  PK++    R   +E+     
Sbjct: 64  YEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFLYEEEIVKLF 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           Q        G + +   E L  +G+R S+     +  +  ++ ++     G         
Sbjct: 124 QMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLVYGKGKKQRYVPFG 183

Query: 240 GFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284
            + K             LL   P    + F+N     +      +       K    ++ 
Sbjct: 184 CYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLVKKTAENIHI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           S H +R   AT   + GA    +    G + +   + YT         +
Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAV 292


>gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
 gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27]
          Length = 324

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 40/296 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRK 127
           I E+         L+ N+  ++     +               + ++T  +IR  +    
Sbjct: 19  IGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLT 78

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L+++R  ++W  R E V +NP  +V  PK          +   +    
Sbjct: 79  RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138

Query: 185 F--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
                         +     E    SGLR S+     +  L   +       K      V
Sbjct: 139 HAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIV 198

Query: 236 ELPDGFMKLLAMTPIGKETFFIN------------------NDKQKMNATQFSIWFKAKA 277
            L D   + L    + ++                           +++A           
Sbjct: 199 PLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLM 258

Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           +    G + + H +R   AT   DAGA    +    G  ++   + YT    DR++
Sbjct: 259 SAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLK 314


>gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
 gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ]
          Length = 319

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 79/283 (27%), Gaps = 34/283 (12%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---------------KSGDFDYRKITT 116
            ++  + K        + ++  ++       ++               +  +    +   
Sbjct: 16  DVVDAWVKCLEEEKRYSKHTVAAYLRDIRDFLQVVYGLRQEKSVVLITEMENLPMTEFRR 75

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-- 174
                  + ++    S ++ ++++R  F++  R   +  +    +  P  +    +    
Sbjct: 76  WITIRCNQGKQS--VSNLRAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEK 133

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +       ++      +       L   GLR S++       L+ +       K      
Sbjct: 134 SHVLKMVSENIHWTSRRDAAIVALLYGCGLRISEAVGLRFGDLEADAVR-VLGKGKKERI 192

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN 283
           + +     KLL                +               T F+   +A     G+ 
Sbjct: 193 IPILPWVQKLLDGYVESCPFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGLP 252

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  + H +R   AT     GA    +    G + +   + YT 
Sbjct: 253 ESTTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTH 295


>gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7]
          Length = 316

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 39/296 (13%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           + ++          ++++   +      +I+   D      T  HIR  V         P
Sbjct: 8   MEQWLAHLQGHRRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQAVARLHGQGLQP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
            S  + L + R  F+W   Q  +  NP   V  PK      +  + E  Q          
Sbjct: 68  RSLARALAAWRGFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLLDRPQLPA 127

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231
                  + +  FE L  SGLR ++      ++ +   +  ++               G 
Sbjct: 128 PDTAIDCRDQAMFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQEAIVKGKGGK 187

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKAT 278
              V L    +  +      ++               F+    ++++     +     AT
Sbjct: 188 TRNVPLGGKAIAAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRVVQLQLNKLAT 247

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             G+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 248 LVGLPVHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTR-LDFQHLA 302


>gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
 gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC
           43183]
          Length = 294

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 93/276 (33%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  +   + +   ++ +      GD     +    IR  +     
Sbjct: 3   LTDSFLDYLLYERNYSEGTVRYYRTDILELQKFGEKLLGDLAPSDVGVDLIREWIVSLMD 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           + + P++  + L+S+R  +K+ +++  VA +P   V  PK+K        + ++ +    
Sbjct: 63  KGYAPNTVNRKLSSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLLDD 122

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
                  EG + RL  E    +G+R S+      + +  +      T K      +    
Sbjct: 123 VDFGERFEGYRDRLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQRLIPFDK 182

Query: 240 GFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
              + +      +        +    + N  +      A   +  +        +S H +
Sbjct: 183 ELGRSMQEYVNVRNQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSKVVTVKKRSPHVL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G +++   E YT  
Sbjct: 243 RHTFATAMLNNGADLSSIKELLGHESLATTEVYTHT 278


>gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
 gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e]
 gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655]
          Length = 329

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 49  WLEH----GLSRNTLDAYRRDLQLFAQWLAARYAASVDHASEPTLTEYIAARSDGKATSS 104

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 105 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 164

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 165 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 224

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 225 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 284

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 285 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 318


>gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161]
 gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
 gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854]
 gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165]
 gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900]
 gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818]
          Length = 300

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+       E  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + R+  E L  +G+R S+           +    +   K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +      +               +N+    +             +KA +      H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G  ++   + YT  
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 393

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 105/355 (29%), Gaps = 23/355 (6%)

Query: 9   PFVTKERTRHGKIIY-YFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPK-----REY 60
            F+ + R+  GK     ++  HGR+I  ++      TF  A  +A    +          
Sbjct: 32  GFIVEVRSTGGKTYALRYKDQHGRQIQHKIGDAKSITFDKARNAAKVLRSQVVLGDSPAE 91

Query: 61  INSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
               +K   TL       Y           + +       + ++   G +   +IT   +
Sbjct: 92  QRKSKKDVPTLAEFCSERYI--PFIKGYKRSWKNDDSLLRNHLLPPLGTYRMNEITQIMV 149

Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +        A + L  ++ +F  A++ E   +    +V+    +      +  
Sbjct: 150 ADLHHGMRANGFASGMANRVLVLLKYIFNLAIKWEVPDVKVNPAVDVKLYEATARERYLS 209

Query: 177 EDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            +  Q      E    +Q +     LL  G R  +   +  +       S +   + +  
Sbjct: 210 IEETQRLLEQLEKSKNTQLKYIAPLLLLLGCRKRELLDSRWEEFDLERRSWRIPMSKSGK 269

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVN-KSAHGV 289
              +P     L  +  + +                F      +      AG+     H +
Sbjct: 270 ARHVPLSLSALEILRQLPRWEGCPYVIPNPDTRLPFVQMHRAWDNARKAAGLPDVRMHDL 329

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           R   A+   ++G + +E+    G   +   + Y   +    L        +S V 
Sbjct: 330 RHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLA--AVDAAASNVP 382


>gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
 gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1]
          Length = 299

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 81/265 (30%), Gaps = 19/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139
              +  +  S+ S                 +   K I   +         P++  +  ++
Sbjct: 23  RGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAKLGRDGMKPTTIQRRRSA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +   F W   Q     +P   + + ++     +  ++ D+++  +        G + R  
Sbjct: 83  LSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDPVGLRDRCM 142

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+        ++ +   ++          +   +   + L         
Sbjct: 143 LELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQWLQQWLLLRPA 202

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F       M    F +  K  AT AG+    S H +R   AT   + GA    
Sbjct: 203 KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSPHTLRHAFATHLLNHGADLRA 262

Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331
           +    G   V   E YT    R R+
Sbjct: 263 VQMLLGHAHVTTTEIYTH-VSRARM 286


>gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
 gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3]
          Length = 311

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 35/296 (11%)

Query: 70  TLK--WLISE---YRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115
           T     L++E   +  +      LA N+  ++E    Q +     +        D   + 
Sbjct: 6   TFATPDLLNERQSWLAAIAGERRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIADLR 65

Query: 116 TKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R+ + SR+   + A    + L  +R    +  ++  V      ++  PK+     +
Sbjct: 66  PVDLRAFLASRRKEGAGARSLGRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKSLPK 125

Query: 173 PWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           P T            Q        ++       L   GLR S++          +  S++
Sbjct: 126 PLTDRQALKITTTEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLAPADFTPDARSLR 185

Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA 277
                     V L     + +             +    + A              +   
Sbjct: 186 ITGKGNKTRMVPLLAVVTEAVEAYKKLCPYHLAADQPLFLGARGGKLQPAIIQREMQKLR 245

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 246 GAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYT-GVDTARL 300


>gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3]
          Length = 312

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 99/309 (32%), Gaps = 42/309 (13%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
            +I  + +        +V + ++++        K         + +     ++ S ++  
Sbjct: 5   AVIDRFLEMMSAERGASVRTLLAYQHDLQWAQNKLSSRSISFFSAQREDLINLLSLMQIA 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172
               +S  + L+++R  F++   +     +P   ++ P++     +              
Sbjct: 65  GCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLLDFA 124

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231
               +  +     +    +  +  E L  +GLR S+     VQ ++     I    K G 
Sbjct: 125 QLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGKGGK 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGV 282
              V + +   ++L+   I ++            A            +   K  A +AG+
Sbjct: 185 ERVVLVSEKARQVLSQWLILRDQGKDATSFYLFPARSSTGYIARQFVARGLKDLAKRAGI 244

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              N S H +R   A+     GA    +    G   +   + YT   +          R+
Sbjct: 245 QSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE---------ARL 295

Query: 340 SSVVDSDDP 348
             +V+   P
Sbjct: 296 HRLVNEHHP 304


>gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 336

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E + Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152]
 gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152]
          Length = 315

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 104/275 (37%), Gaps = 26/275 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR-- 126
           LI  +     H  + + ++ I+++   +             D  ++    IRS + S   
Sbjct: 22  LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + +  +  + ++S++  +K+  + E +  NP    +  K   +   P++++++      
Sbjct: 82  EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
            +E S    + +L  E    +G+R ++     ++ + +         K      V + + 
Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNKSAHGV 289
            +K L +    ++    N++   +                + +F   ++K  V KS H +
Sbjct: 202 VLKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSK--VKKSPHML 259

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA  + +    G  ++   + YT 
Sbjct: 260 RHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH 294


>gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
 gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216]
          Length = 309

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 83/277 (29%), Gaps = 31/277 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT--- 129
           +Y  +      +  +  ++       +        DFD R+IT + +R  +  R  T   
Sbjct: 7   QYLATV--RRFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREWIVHRTETKHL 64

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+S+R  F++  R   +       +   K             M+        
Sbjct: 65  GAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEGILDELDR 124

Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
            S        +  L        GLR ++           +  +     K      V +  
Sbjct: 125 ESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDKERIVPILP 184

Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              + +       +   I              ++++ +      +++  + GV   KS H
Sbjct: 185 PVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGGVQGKKSPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT   + GA    +    G  ++   + YT 
Sbjct: 245 VLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH 281


>gi|116050518|ref|YP_790663.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585739|gb|ABJ11754.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 401

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 113/368 (30%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKVTPTGRKVFMLQYRTNSGVRRKPSLGQFGELTVEQARSLAQDWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116
                +  +K  T+K L   +           +++  ++   D   I   G     ++T 
Sbjct: 87  PGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAFGTKKVHEVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I + ++  + +P+ A + L+ +R +F  A    Y           PK   +G      
Sbjct: 147 NDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLIT 206

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------IFS 223
           +D       + + ++       +L   +R      A +  +                   
Sbjct: 207 DDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPD 266

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            KT      ++ E                    I + +Q ++   +   ++   + AGV 
Sbjct: 267 SKTGDMSKPLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQGWRRILSNAGVP 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR-RIS 340
           K   HG+R  SAT  A++G      MA    KTV     Y    D  +R   +    R  
Sbjct: 327 KVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTEDDPVRQAAELVATRRQ 386

Query: 341 SVVDSDDP 348
           ++     P
Sbjct: 387 TITGKRQP 394


>gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM
           12804]
 gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii]
          Length = 326

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 41/310 (13%)

Query: 63  SPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119
           +    P TL   +  + +        + ++  ++     Q+  + ++      ++   HI
Sbjct: 4   AEPAPPDTLPQPLDAWLQHLRAHRRYSPHTLDAYRRDLRQLAVLAQAAGLPLEQLANGHI 63

Query: 120 RSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R  V         P S  + L + R  ++W      +A NP   V  PK      +  + 
Sbjct: 64  RQFVARLHAQGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKALSV 123

Query: 177 EDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           E  Q               G + R  FE L  SGLR S+     +++ ++  +  ++   
Sbjct: 124 EQAQALLDHATSRLATDPAGLRDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSWLN 183

Query: 230 ------------GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKM 264
                       G    V +    +  L      +                      +++
Sbjct: 184 LDDAEVVVLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGRRI 243

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +     A  AG+      H +R   A+    +      +    G   +   + Y
Sbjct: 244 APRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIY 303

Query: 323 TKGADRIRLG 332
           T+  D   L 
Sbjct: 304 TR-LDFQHLA 312


>gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans
           PsJN]
 gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN]
          Length = 307

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 90/294 (30%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y  +      L+ ++   +    +++ + +       +T   IR  V    
Sbjct: 1   MTAADPIAAYLSNLEHERRLSAHTLRGYAHELEELKQLAKGRPLESLTPVDIRGAVSRAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W   +  +A NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLME 120

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                  EG +     E    SGLR ++      +    + +                 K
Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    ++ L      ++    ++           +++        K  A  A
Sbjct: 181 GNRRRVVPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293


>gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 310

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 36/293 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES-- 125
             +Y  +      +  +   +E   +              DF   KI   HI   +    
Sbjct: 14  FKKYLATE--RGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTI 71

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQ 180
               + P++  + L S+R  FK+ V+ EY+ +NP     + +   R              
Sbjct: 72  LVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKY 131

Query: 181 QFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                   G    +     +  LY+GLR S+     +  +     SIK          V 
Sbjct: 132 IETIKKHGGVNLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKFYGKGKKERYVP 191

Query: 237 LPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVN-- 283
           L    +  +      +      N             ++++     +  K  A  AGV   
Sbjct: 192 LHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVKKYAKLAGVKNA 251

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
              + H +R   A++          L    G   +   + YT     + +  I
Sbjct: 252 DKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAI 304


>gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343]
 gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R]
          Length = 293

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++     Q+          FD  ++  + +R  +     
Sbjct: 2   LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +      T K      +   D
Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289
              + +      +           F+  + +++         K   +K      +S H +
Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G  ++   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277


>gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b F2365]
 gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459]
 gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175]
 gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC
 gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC
 gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503]
 gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262]
 gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017]
 gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816]
 gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+       E  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + R+  E L  +G+R S+           +    +   K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190

Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +      +               +N+    +             +KA +      H +R 
Sbjct: 191 ITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G  ++   + YT  
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|269928745|ref|YP_003321066.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788102|gb|ACZ40244.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 376

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 104/361 (28%), Gaps = 43/361 (11%)

Query: 22  IYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
            +  R      G R R  +   +         L  +  +++Y      +  T+K  +  +
Sbjct: 19  YWEARMTFWEQGTRRRKSFYGRT--RQEVADKLARALVEQQYGLPVVSERETVKDYLERW 76

Query: 79  RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAI 134
            +     SL   +  S+       +    G     +++   ++  +  ++    +P +  
Sbjct: 77  LEDVARPSLRPRTYESYRGIITRHLTPALGRTRLARLSPDQVQRYINQKQAAGLSPRTVT 136

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +R     A+R   V+ N       PK+     R  T E+ + F      G +   
Sbjct: 137 YHRAVLRKALNDAMRWGLVSRNAAALAAPPKQDRPPARFLTPEEARHFLDT-VAGHRLEA 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------- 232
            F   L  GLR  ++       +     ++  +                           
Sbjct: 196 LFTVALAVGLRQGEALGLRWDDVDLEAGTLTVRYALQRSGGALVLVEPKTQRSRRTVALP 255

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                            ++ A     +   F +     ++A   +  F     +AG+   
Sbjct: 256 AVALRALREHRTRQLEERIAAPYWDDQGFVFTSTIGTAIDARNLTREFHRLRAEAGLPWL 315

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
             H +R   A++    G     +M   G   +     TY+  A    L    + +I  ++
Sbjct: 316 RFHDLRHGCASLLMAQGVNPRVVMEILGHSQITLTLGTYSHVAPT--LARDAADKIDGIL 373

Query: 344 D 344
            
Sbjct: 374 G 374


>gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083]
 gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083]
          Length = 314

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESRK 127
            IS +  +       A N+++++                        H+ +     +++ 
Sbjct: 10  WISTFLDAQAAELGAATNTQLAYARDLKDFAEYLSGRKLSFENAARDHVEAYLIFCDAQG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              S+  + L++++ L+++   + + + NP + +  P +     +     ++    +   
Sbjct: 70  LAKSTRARRLSAIKQLYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLAAAR 129

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                 ++  +     E L  +G+R S+     +   + N   +    K      V L  
Sbjct: 130 VVGRSPTDRLRNTCLMELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERMVPLSP 189

Query: 240 GFMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                L                      +  F     +  +   +F I  K  +  AGV 
Sbjct: 190 PARDALTEWLETLDDLQEAGRLKGKAVSRFLFPSRGKEGHLTRHRFYILIKELSVHAGVP 249

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT   + GA    +    G   V   E YT   +          R+ 
Sbjct: 250 PAKVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLE---------ARLQ 300

Query: 341 SVVDSDDP 348
            +V    P
Sbjct: 301 ELVLQHHP 308


>gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
 gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270]
          Length = 324

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 93/298 (31%), Gaps = 44/298 (14%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRK-------SG----------------DF 109
           ++ +Y          +  +   +     + ++         G                  
Sbjct: 10  ILDDYLNYLLTIKGRSNLTVKEYYYDLKRFLKFIIMRKKLFGYNLNSDINSVSILSINKR 69

Query: 110 DYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERP 164
           D   I       +I     +   +  +  + +++++  FK+       +  NP   +E P
Sbjct: 70  DILDIDISDLHAYISFCDSNYNDSTKTKARKISAIKSWFKYLHNTVELINKNPAEKLELP 129

Query: 165 KRKTEGIRPWT------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           K +       T        +  + +      ++        L  GLR S+     ++ ++
Sbjct: 130 KLQKRNPVYLTLSESEKVINSIKEEKNEFNRTRDLCIILIFLTCGLRISELTGINIESIK 189

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++  S+  +     I     +    +     L          F+++ K++++     +  
Sbjct: 190 DDKLSVIGKGNKERIVFLNENCIYAIKSYLQLRPCTKNTTALFLSSHKKRISNRSIQLRL 249

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
           K     AG++    + H +R  +AT+    G      + +  G  +V   + YT   D
Sbjct: 250 KKYILLAGLDPKIYTPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLDD 307


>gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK
 gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 17/262 (6%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +     + ++N+++S+        R  G      +  + IR+        +K  P+S   
Sbjct: 26  EDMQVRNFSLNTQLSYLRQVSLFARHFGKAP-DLLGREDIRTYQVYLANEKKLAPNSIHI 84

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + ++R  F   + +++V        ++P    +     + +++Q F        +    
Sbjct: 85  AIAALRFFFSVTLERDWVPAEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDLKHHAI 140

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S++ +     + +    ++    K      V L    +++L        
Sbjct: 141 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMPR 200

Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                         +               ++     + H +R   A    +AGA    +
Sbjct: 201 PKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 260

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G +++     Y + A   
Sbjct: 261 QLLLGHRSLATTAHYLRIATNK 282


>gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 336

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAEQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium
           HF0130_15N16]
          Length = 317

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 30/302 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132
           + ++  S    +L  ++R S+    +           +   +    I S V   + +  +
Sbjct: 14  VEQFMHSLESRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEEGTINSYVAHLRKSGRA 73

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +   S+R  +K+   + ++ ++P  ++   K      +    E +++  +     
Sbjct: 74  PSGVARATVSIRSFYKYLTLEGHIKVDPGAAIAVLKVPQGFPKAIDIEKVERLLNTPVGE 133

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
                + R   E L  +GLR S+     V  +      ++          V L       
Sbjct: 134 GPYVLRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVFGKGRKERVVPLGGHAKDA 193

Query: 245 LAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           LA                     +   F+N     ++        +    +AG+  + + 
Sbjct: 194 LAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTWAIVRRHGLRAGLGDDLTP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVD 344
           H +R   AT   +AGA+   +    G  ++   + YT  + A+   + ++   R S+ + 
Sbjct: 254 HVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRASAHLM 313

Query: 345 SD 346
            D
Sbjct: 314 ED 315


>gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213]
 gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 88/267 (32%), Gaps = 20/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQF---LT 138
             ++ ++  +++     +       G  ++ ++ +  +R  +        SA      L 
Sbjct: 22  KQVSPHTLSNYQRQLMAVSELFSQAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLV 81

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           ++R  F + ++   ++ NP L V+ PK      +    E + Q  +  S+     +    
Sbjct: 82  ALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAM 141

Query: 196 FEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E +  SGLR S+           +        K      V +    +K L      +  
Sbjct: 142 MELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQ 201

Query: 255 FFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           F   ++         +++     +  K    + G+  +   H +R   AT   +A     
Sbjct: 202 FKPQDNAVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLR 261

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332
            +    G  ++   + YT   D   L 
Sbjct: 262 AVQELLGHSSLSTTQIYTH-LDFQHLA 287


>gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
 gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3]
          Length = 312

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 100/303 (33%), Gaps = 24/303 (7%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS-- 121
           P  L   +  +    H    L++ ++ +++   + + +     G   + ++ +  +R   
Sbjct: 10  PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +    SS    L+S+R    + + +  +  NP   V  P+++    +    ++M 
Sbjct: 70  MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+          V 
Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +      +           F++    +++             K  V  + S 
Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVD 344
           H +R   AT   ++      +    G + +   + YT   D   L      +   +   +
Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAKVYDQAHPRARKKN 308

Query: 345 SDD 347
           + D
Sbjct: 309 NKD 311


>gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA]
 gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter
           sulfurreducens PCA]
 gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400]
          Length = 294

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 31/292 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHT-- 129
            Y ++     ++ ++R ++ES   Q                 I+   +R  +     +  
Sbjct: 10  RYLENERA--VSPHTRAAYESDLAQFRDFVRGELGAGAGAAAISHLLVRRWLAQLHQSHA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSF 185
            SS  + L ++R  F + VR   +  NP   V  PKR+ +       +++       +  
Sbjct: 68  RSSIGRKLAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTALVESPREP 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
                + R   E L   G+R S+     V  +     +++   K G    V +       
Sbjct: 128 GVLSLRDRAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGKERVVPIGSHARLA 187

Query: 245 LAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATI 296
           L+     +         F N    ++ A            K  A    S H +R   AT 
Sbjct: 188 LSSYLAARNHPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAAMRKISPHTLRHTFATH 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             + GA    +    G  ++   + YT              R+  V D   P
Sbjct: 248 LLEGGADLRAIQELLGHASLSTTQKYTHV---------GIDRLMEVYDKAHP 290


>gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 327

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 97/304 (31%), Gaps = 44/304 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKH 118
           L+  ++ Y  +      + N+  ++        R               + D   +    
Sbjct: 15  LEEFLN-YFSTIKAR--SPNTVKAYLYDLILFFRFIKVRKNLCSDSDFDNIDISDVDISL 71

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165
           I S                R +TP +  + + S+R  + +   +++ +  NP L +E PK
Sbjct: 72  IESIDLNDLYAFLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPK 131

Query: 166 RKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                    T ++  +  +        +        L  GLR S+     +  ++++  +
Sbjct: 132 LGIRQPVYLTLDESVKLLNSIDGEFKERDYAIITLFLNCGLRLSELANINITDIKDDKLT 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275
               K     TV L D  +  +      +    + + K        Q+++        K 
Sbjct: 192 -VIGKGNKQRTVYLNDACINAINDYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKK 250

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIR 330
               A ++    S H +R  +AT+    G      L    G   V   + YT   D ++R
Sbjct: 251 HLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLR 310

Query: 331 LGIK 334
             + 
Sbjct: 311 DAVS 314


>gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1]
 gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1]
          Length = 312

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 89/288 (30%), Gaps = 33/288 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           +I  + +          ++  +++        +         + +      + S + +  
Sbjct: 6   VIDHFLEMMSAERGACEHTLAAYQRDLQWAQDELFSHSVSLFSAQREDLIGLLSLMHTLG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------------P 173
              SS  + L+++R  +++   +   A +P  +++ P++     +               
Sbjct: 66  FAASSQARRLSTLRQFYQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKLLDLAQ 125

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232
                            + +L  E L  +GLR S+     VQ ++   +SI    K    
Sbjct: 126 LEVNQEDYGSKGHFRALRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRGKGKKE 185

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGVN 283
             V L     ++L+     ++            A            +   K+ A +AG+ 
Sbjct: 186 RMVLLSKKACQVLSQWLSLRDQGKYAESLYLFPARSETGYIARQVVARDLKSLARRAGIK 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               S H +R   A+     GA    +    G   +   + YT   + 
Sbjct: 246 SGGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEE 293


>gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e]
 gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland
           1988]
 gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL
           R2-561]
 gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S]
 gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL
           F2-515]
 gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
 gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC
 gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e]
 gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578]
 gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 87/274 (31%), Gaps = 27/274 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130
           +Y  S    + +VN+  ++E+      R   +           +  +   + ++ +  + 
Sbjct: 13  DYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+       E  
Sbjct: 71  TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130

Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                + R+  E L  +G+R S+           +    +   K      V         
Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190

Query: 245 LAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +      +               +N+    +             +KA +      H +R 
Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G  ++   + YT  
Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4]
 gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4]
          Length = 348

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 88/295 (29%), Gaps = 39/295 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L  L  +Y  S      A  +  S+   +        +     D R I T  +R  V   
Sbjct: 25  LDALFEKYYDSKVAEGRAEGTLKSYRRVYGVFSEYLTNNDVQLDIRAIETDTVRGFVAWL 84

Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                 +P S    + +++  F + V ++    NP   V++ ++
Sbjct: 85  LRERIRWDGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFSFLVDEDLADFNPVSKVKKVRQ 144

Query: 167 KTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             + I   T ++    M           +  +   FLL +  R ++ C    + +     
Sbjct: 145 IEKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDN 204

Query: 223 SIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWF 273
           ++  +    KT     V       +LL       + F                  F    
Sbjct: 205 TVHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDSEYIFLSNYGEQLEPNHFRSRL 264

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           K  A KAG+ +    H  R   AT+  +AG     L    G   +     YT  +
Sbjct: 265 KGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVS 319


>gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 104/322 (32%), Gaps = 16/322 (4%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
               G+RI     +  T       A+           +  +   T   L  ++  + H+ 
Sbjct: 29  WTDEGKRIYKYLSYHIT----RKEAMQALASYNANPYNVDESNITFGELYEKW-STRHYK 83

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           +L+ N+   +E    +  +   D   + I   H+++ ++       +       ++ +F 
Sbjct: 84  NLSKNTIKGYE-TCSKYCKPIFDMKIKDIKIVHLQNLIDGLNKNHGTLKMMKNILKQIFG 142

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           +A+  + +  +    ++  K  T   +    +          +  Q       ++Y+G+R
Sbjct: 143 YAMELDIIQKDYSRFLKIGKHVTIKQKSIFNDKEIAVLWKNLDKYQYIDTILIMIYTGMR 202

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDK 261
             +      + +     +I  + + T       + +     +L+        +  +    
Sbjct: 203 VGEMLNLRKEDINLIEQTIIVRTSKTEAGTNRIIPIHPRIKELIQNRYKNSNSDHLITGL 262

Query: 262 QKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           Q  N+  +  +    F     +  +  + H  R   AT   DAG  A  +    G ++  
Sbjct: 263 QNRNSISYVYYDIRLFNPIMDELNIKHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFA 322

Query: 318 QAE-TYTK-GADRIRLGIKNSR 337
             E  YT      +R  I+   
Sbjct: 323 LTEKVYTHKKVSELRKAIELVN 344


>gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163]
 gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           +  + +       L+  ++I +      II    +    +               +    
Sbjct: 11  VEGFLRFLKVERQLSPLTQIGYRRQLSAIIVLLDELKVVEWARLDAALVRALAARSTRSG 70

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S    L+++R    W V Q  +  NP   V  P+      +    +++ +      
Sbjct: 71  LKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLDIDL 130

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     + HL   +       K      + +    + 
Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVH 190

Query: 244 LLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +E F   ++        ++++       F     K G+  +   H +R   A
Sbjct: 191 WIENWLEMRELFEPQDNALFLSNKGKRISTRNVQKRFAEWGVKQGMSSHIHPHKLRHSFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 251 THLLESSGDLRAVQELLGHANLTTTQIYTH-LDFQHLA 287


>gi|254476067|ref|ZP_05089453.1| phage integrase family protein [Ruegeria sp. R11]
 gi|214030310|gb|EEB71145.1| phage integrase family protein [Ruegeria sp. R11]
          Length = 335

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 107/337 (31%), Gaps = 19/337 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K   RH     YFRK     +R+      + F   Y   +TG               T+
Sbjct: 6   KKYLWRHPSGRIYFRKTGMSLVRIHAAEGTADFDREYWDIMTGKKW---------AAKTS 56

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              LI +YR+S  W  L   +R  +E     I  K G+ D R  T     +  ++  H  
Sbjct: 57  FAALILDYRESDRWTGLKPRTRSDYEKVLSYIEEKIGNRDVRAFTRPDAIAAQKANAHRT 116

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEG 189
             A   +  + VL + A+   +V  NP   V+  K      +      D           
Sbjct: 117 RFANYIVQILVVLMEHAIDIGWVKENPAKGVKALKTPEHKKKQHLPWPDWAVDLFREKVT 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--- 246
            Q RL FE  + +  R  D              +++  KT   + +       + L    
Sbjct: 177 GQARLIFEIGVGTVQRPGDWIAFCWGDYDGENLALRQNKTDKPLILPCTRQLKEALDLQR 236

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
                 PI      +     +M+    +     +  + G+     H +R       A AG
Sbjct: 237 AGLGTIPIAAHPILMTQGGGRMSYRYMAQIMLKERKRLGLEAYDLHALRYRGVMELAWAG 296

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
               E+ +  G  T +    Y   A +I    + S +
Sbjct: 297 CDDDEIASYSGHATKEMIAKYAGEARQIMRARQASEK 333


>gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 327

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 101/316 (31%), Gaps = 45/316 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKH 118
           L+  ++ Y  +      + N+  ++E       R                 D   +    
Sbjct: 15  LEEFLN-YFSTIKAR--SPNTVKAYEYDLVLFFRFIKVRKNLSSDSDFDQIDISDVDISL 71

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165
           I S                R +TP +  + + S+R  + +   +++ +  NP L +E PK
Sbjct: 72  IESIDLNDLYAYLSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPK 131

Query: 166 RKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                    T ++  +           +        L  GLR S+     +  ++++  +
Sbjct: 132 LGIRQPVYLTLDESMKLLDSIDGPFKERDYAIITLFLNCGLRLSELANINISDIKDDKLT 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275
               K     TV L D  +  +      +    + + K        Q+++        K 
Sbjct: 192 -VIGKGNKQRTVYLNDACISAINEYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKK 250

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIR 330
               A ++    S H +R  +AT+    G      L    G   V   + YT   D ++R
Sbjct: 251 HLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLR 310

Query: 331 LGIKNSRRISSVVDSD 346
             +     +S +  ++
Sbjct: 311 DAVSK-NPLSELNSNN 325


>gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 386

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 94/294 (31%), Gaps = 20/294 (6%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G   K     +    PT    L+  YR+       + ++  S+ +   Q +   G+   
Sbjct: 72  QGEVEKFRERLAREANPT----LLDTYRQFLRGRRYSESTIASYGTMAAQFLEFLGEKPP 127

Query: 112 RKITT----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            K         ++  V  RK + S+  Q +++++ L  +              +  P++ 
Sbjct: 128 EKADQTDAEAFLQWLVLERKVSVSTHRQAISALKQLEAFLPA----CHLEAKGLVSPRKD 183

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IK 225
            +       +         +   + R     L   GLR  +     +  +        ++
Sbjct: 184 RKLPGVL-GKAEVMRLLQQTRNLKHRTLTALLYGCGLRVGELINLQLAEVDIPRRQLLVR 242

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGV 282
             K      V LP+  + LL              + +     +AT    + KA + +AG+
Sbjct: 243 AGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLAEGRPGQQYSATSIRAFLKANSRRAGI 302

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
               + H +R   AT   + G     +    G    +    YT  + +  L I+
Sbjct: 303 LKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDIQ 356


>gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
 gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M]
          Length = 307

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y  +      L+ ++   +    +Q+   +       +T   +R  V    
Sbjct: 1   MTETDFIAAYLSNLEHERRLSAHTLRGYTHELEQLRLLAKGRPLESLTAVDVRGAVSRAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLME 120

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                 +EG +     E    SGLR S+      +    + +                 K
Sbjct: 121 SPPAASAEGLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    +  L      ++    ++           +++        K  A  A
Sbjct: 181 GKRRRIVPVGSKALTALNAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALLA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT]
 gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT]
          Length = 291

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + +Y         L+  + I+++   ++I   ++++    ++++T   +R  +   +   
Sbjct: 1   MQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIQSWQQVTPSVVRFVLAQSRKEG 60

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184
               S    L+++R    + V Q  + +N  + +  PK+     +    E +QQ    +S
Sbjct: 61  LHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNES 120

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E +  SGLR S+     +  +      ++          +       +
Sbjct: 121 KEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYASQ 180

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
            +              E  F++    +++        +    + G+N     H +R   A
Sbjct: 181 AIQQWLKVRLLFNPKDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   +  +    +    G   +   + YT   D   L 
Sbjct: 241 THMLENSSDLRAVQELLGHSNLSTTQIYTH-LDFQHLA 277


>gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisA53]
 gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 342

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 79/290 (27%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDF----DYRKITTKHIRSGVES 125
           I  +         L+  +  ++     Q         G       + K+    +R+ + S
Sbjct: 43  IVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAGDVRAFMAS 102

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------- 174
           R+       S ++ L  +R   ++  R+    +    ++  PK      +P         
Sbjct: 103 RRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPIQIASAKRL 162

Query: 175 -TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              ++    +       +       L  SGLR S++     + +           TG   
Sbjct: 163 TDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDTLIVTGKGN 222

Query: 234 TVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN 283
              +      +L                            ++     +  +      G+ 
Sbjct: 223 KTRMVPVLQSVLQSVADYVAICPHPLAADRAIFVGARGGPLSPRIIQLTMERMRGALGLP 282

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 283 DSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYT-GIDSERL 331


>gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2]
 gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 295

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 27/274 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR----KHTPS 131
           + K     + + ++  ++E      +        D R +    +R  +  R    + + S
Sbjct: 2   WLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSS 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  + LTS+R   KWA + +Y+ INP    +  ++          E + Q          
Sbjct: 62  SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + +   E L  SGLR ++     ++ +  N   ++          V       
Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAK 181

Query: 243 KLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVR 290
           + L         +  + D+                Q     K +A +AGV  +   H +R
Sbjct: 182 ESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+    +      +    G   +   + YT 
Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275


>gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 27/289 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
           I  +         L+VN ++      +             D   +TT+HI   +  RK  
Sbjct: 5   IDAFLLHLATERGLSVNYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKGD 64

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
              PSS    L ++++ F+W   +     +P   V  P+ +        + ++++     
Sbjct: 65  GLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLESV 124

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + R   E    SGLR S+   A V++L      ++          V +    
Sbjct: 125 TGQEPLDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLVPVGGAA 184

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288
              ++            P  K   F+N +  ++   +     K +A  AG++      H 
Sbjct: 185 RDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDADRIYPHL 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +R   AT     GA    +    G   +   + YT   D+ RL   + +
Sbjct: 245 LRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTH-VDQKRLKDTHRK 292


>gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC
 gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC
 gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus]
 gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 35/306 (11%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKI--TTKHIRSGVE 124
           T+L  L+ ++R         + ++  ++        R          +  T   IR  + 
Sbjct: 2   TSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYLG 61

Query: 125 SRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +    H P+S  + L S++  +K+ VRQ+ +  +P   V+ PK      +    E++   
Sbjct: 62  TLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAI 121

Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                     G + R   E L   GLR S+ C   +  +  +   ++          V +
Sbjct: 122 LDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLVPV 181

Query: 238 PDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
               ++ L                    E  F+N    ++     +        K  +  
Sbjct: 182 NAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCALTR 241

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   AT     GA    +    G  ++   + YT+             ++  V
Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVT---------WEQLQQV 292

Query: 343 VDSDDP 348
            DS  P
Sbjct: 293 YDSAHP 298


>gi|150388670|ref|YP_001318719.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149948532|gb|ABR47060.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 382

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 103/351 (29%), Gaps = 41/351 (11%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     Y    G   G R +           A+ +                    +  
Sbjct: 6   RKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTISFS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             ++ + ++     L  NS+ + +      I    G++   +IT++ +++ +  +   ++
Sbjct: 66  DYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFITKKSKAYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            +       ++   FK AV  E++ INP   V+ PKR  + +    K    +  +  +E 
Sbjct: 126 KNYISMIHATLSTAFKMAVEWEFIRINPMTRVKVPKRDDQEMDKEIKTLSPEEVNRCAER 185

Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------IKTQKTGTI 232
             G+   + F    ++GLR  +        +  +                     K    
Sbjct: 186 LQGTHHYIPFMIAFHTGLRAGEVSALQWSDIDFDNQMLSVTKRLDYSASKENWEFKPPKT 245

Query: 233 ITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKA-------------- 275
            +          L          +        +      F   F+               
Sbjct: 246 RSSNRTIAIGNELITILKSHSINQKKNKLKYGKHYTENDFICTFENGEVVITKAIGRVSE 305

Query: 276 -KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                  ++ + H +R   AT+  +AG     +    G  TV    +TY+ 
Sbjct: 306 IIIRDVKIDFNFHMLRHTHATMLLEAGINPKVVQERLGHSTVSITLDTYSH 356


>gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453]
 gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453]
          Length = 294

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRK 127
           K  + EY         L+ ++  S+ +  +  I  + D +      +    +   +   +
Sbjct: 2   KQYLDEYVTYLEEVKRLSRSTIESYRADLNGFIEYAADREVTHPQDVNRTVLGLYLGRLR 61

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A   L     +R  F++ VRQ  +  +P   ++RPK + +  +  T E + +  S
Sbjct: 62  QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLS 121

Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                +    + R   E L  SG++ S+     +  L   +  ++     G    + +  
Sbjct: 122 APDSDTPQGARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERILPISQ 181

Query: 240 GFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAH 287
              + +A       +  I + +           ++    F    K     A ++   + H
Sbjct: 182 IAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEITPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A      GA    +    G   +     Y
Sbjct: 242 TLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY 276


>gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010]
 gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 82/277 (29%), Gaps = 24/277 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP--- 130
           +Y        L+ ++  ++     Q+I      +      +    +R  +          
Sbjct: 14  DYLA--QQRRLSHHTVNNYRRDLTQLIDFCQGQELSHWHSVKPADLRQFIAFLHRKGLAS 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L++ R L+++ +RQ     NP  +V+ PK +         + M          +
Sbjct: 72  RTIQRMLSATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTLDVDQMNALLDQTQADT 131

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLL 245
               + R   E    SGLR ++     ++ +         T K        +    +K L
Sbjct: 132 FVACRDRAIMELFYSSGLRLAELATLDLRDIDFGDQLVHVTGKGNKDRVCPVGAVAIKAL 191

Query: 246 AMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                         +   FI    +++              K G+      H +R   A+
Sbjct: 192 QDWLEKRDQTGFFDQPAVFITQQGRRLGMRSIQKRLSFWGKKQGISDRVHPHRLRHAFAS 251

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              ++      +    G   +   + YT   D   L 
Sbjct: 252 HMLESSGDLRAVQELLGHSDISTTQIYTH-VDFQHLA 287


>gi|270308830|ref|YP_003330888.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270154722|gb|ACZ62560.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 385

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 105/364 (28%), Gaps = 50/364 (13%)

Query: 12  TKERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             ++  +G     +Y  R     +    +             L     ++   +  +   
Sbjct: 4   HIKKRANGTWSIVVYMGRDPKTGKKIYQWQTVKGTKSHAEKELAALINRKNNGSFVKPTK 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT+   +  + ++    + A  +   +       +    G  +  ++  +HI++      
Sbjct: 64  TTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLGRIELTQLRPEHIQAYYSKAL 123

Query: 128 HTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRP 173
                        +       +      AV+   +A N  ++V+ P+       T     
Sbjct: 124 SGGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLLARNVAMAVDPPRPEKREMHTIAPED 183

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------- 217
            +    +  K   + G    L F   L++G+R  +        +                
Sbjct: 184 MSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALRWSDIDLAKSKIYVRCSLQCL 243

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------------NNDKQ 262
               I   + +  G+   V +    ++ L +         I              + D  
Sbjct: 244 KNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANMILQGKTLQGDSLVFAHFDGT 303

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
            +N    S  F   A +AG+N   H +R   AT+   AG     +    G  TV    +T
Sbjct: 304 PINPNTVSPAFAKIAKRAGLNLRLHDLRHSHATLMLTAGVHPKIVSERLGHSTVAFTLDT 363

Query: 322 YTKG 325
           Y+  
Sbjct: 364 YSHV 367


>gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
 gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC
           33277]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 23/270 (8%)

Query: 87  LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
           L  NS  ++     ++       +  +R+++ ++++  V        +  S  + ++ ++
Sbjct: 20  LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFE 197
             F++ V +EY+  +P   +E P+         T E++ +             + R   E
Sbjct: 80  SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQGAQRNRAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI------ 250
            L   GLR S+       +L  N   ++          V + +  +  L           
Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                +E  F++N  + ++     +  K  A +AG+ KS   H  R   AT   + GA  
Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIK 334
             +    G + +   E YT   DR  L  +
Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETLRHE 288


>gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4]
 gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4]
          Length = 332

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 98/324 (30%), Gaps = 51/324 (15%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTP- 130
           I  + +        A N+  S+E   + +           +  T+  + + +    H   
Sbjct: 9   IEAFLEMMSAERGAAGNTLSSYERDLEDLHGFLATRKVSVMAATSDDLSAYLADLGHRGF 68

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183
             SS  + L+++R  +K+   +     +P   ++ PK+     +  +  D+ +       
Sbjct: 69  EASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLSIADVDKLLSLAQA 128

Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                     +  +     E L  +G+R S+        L      +  +        V 
Sbjct: 129 EAALDGPDRLQRLRRLALLELLYATGMRVSELVSLPANVLAQEGRFLVIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMN-----------------------------AT 267
           L    +  + +    KE         K                                 
Sbjct: 189 LSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFPAASREGYLPRQ 248

Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            F+   K  A +AG++    S H +R   A+   + GA    +    G   +   + YT 
Sbjct: 249 VFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTH 308

Query: 325 GA-DRIRLGIKNSRRISSVVDSDD 347
              +R+++ ++    ++    + D
Sbjct: 309 VLEERLQILVETHHPLAKHRKNHD 332


>gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
 gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1]
 gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2]
 gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M]
          Length = 306

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 90/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +    IR   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
           +EG +     E    SGLR ++     V + Q   +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292


>gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 93/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRK 127
           ++ + +       L+  +  S++     I       G  D+R++    +R   +  +   
Sbjct: 11  VNAFLRYLRVERRLSPLTLRSYQHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRDG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S  Q L+++R    W V +  ++ NP   V  PK      +    ++  +  +   
Sbjct: 71  LSAASLAQRLSALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAIDL 130

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR ++      +HL   +       K      + +    + 
Sbjct: 131 NDPLAVRDRAMLEVMYGAGLRLAELVGLDCRHLDLADGEIWVLGKGSKERRLPIGATAVA 190

Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      +E +  ++         ++++       F     K G+  +   H +R   A
Sbjct: 191 WLRRWLDVREIYAPDDDAVFVSSRGKRISMRNVQKRFAEWGVKQGISSHVHPHKLRHSFA 250

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 251 THMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 287


>gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
 gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 94/318 (29%), Gaps = 30/318 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G    +       + F   Y+        A+  + P++E    P             Y +
Sbjct: 47  GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136
                  + ++   + SYF    +         +T   I       +  +  +     Q 
Sbjct: 99  KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +++    +   +       C  V R KR+       +KE++++         +    F
Sbjct: 159 INAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             L  +GLR S+        +  +     ++  K        L    MK L       + 
Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274

Query: 255 FFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
                + +       +  S   KA A +AG+ K    H +R   A    + G     +  
Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQGTDIKIVKE 334

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   E Y   AD
Sbjct: 335 LMGHNNIKTTERYVHIAD 352


>gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 30/282 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + + ++  ++E      I              +    IR+ + +  +T     S  + +
Sbjct: 14  KNYSKHTVNAYEKDIQSFIDFCDKELKLESINNVEYNIIRNWIVTLVNTGISNRSVNRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQP 192
            S++  +K+  R   + INP    +  K   +   P+++E+MQ+           EGS+ 
Sbjct: 74  ASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEEMQRILLQLPFEDDFEGSRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT-------------VELP 238
           +L  E L  +G+R S+        +  N        K                       
Sbjct: 134 KLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKERIVPLLLPTIDLFEAYFRY 193

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
              ++ +        T   N   + +       +F   ++K  V +S H +R   AT   
Sbjct: 194 RKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSSK--VKRSPHILRHTFATHLL 251

Query: 299 DAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
           + GA  + +    G  ++   + YT    A+  ++      R
Sbjct: 252 NKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHPR 293


>gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 336

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAIQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 293

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 96/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV---ES 125
           L   +     +  + +  + +++     Q+          FD  ++  + +R  +     
Sbjct: 2   LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +T +S  + L+S+R  +K+ +RQ  V+++P   +  PK K        + +M +    
Sbjct: 62  QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121

Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                  +G + RL  E    +G+R S+      + +  +      T K      +   D
Sbjct: 122 TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181

Query: 240 GFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289
              + +      +           F+  + +++         K   +K      +S H +
Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   +  A    +    G  ++   E YT  
Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHT 277


>gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2]
 gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2]
 gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 369

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 117/364 (32%), Gaps = 36/364 (9%)

Query: 14  ERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + G+    F +G     +++  Y + ST+             ++    S  +   TL
Sbjct: 9   YKRKDGRWEGRFPRGRKIDGKLKYGYIYGSTYQEVRQKLYVAKANQQTIYQSRGQGAFTL 68

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127
              I ++        + +++  S+     + +++  GD    +I    +   VE      
Sbjct: 69  NEWIEQWLVIVK-KEVKLSTFASYSYKLSNYVLKTMGDSALNEIDDLRLNKLVEDLIAQG 127

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+       +      AV+ +++  NPC ++  PK K   IR    E+ ++ ++   
Sbjct: 128 LSKSTICVIFGILSRALNHAVKAKHLKSNPCSTISLPKPKRRHIRALDIEEQKKLENVAY 187

Query: 188 EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNN------------------------IF 222
           +  Q + L+    L++GLR  +      + +                            +
Sbjct: 188 KNPQQQGLSVIVALHTGLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSSFGESTQLYY 247

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                     I          L       +  F  + + +       + +F     K  +
Sbjct: 248 DCTKTINSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQL 307

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
           +K   H +R   AT   ++ +    + A  G  +     + Y       R  IK  +R+ 
Sbjct: 308 DKVHFHQLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADSLLEQR--IKAIKRME 365

Query: 341 SVVD 344
             + 
Sbjct: 366 RTIA 369


>gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 328

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 48/304 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114
           P ++   ++ Y ++    S + N+  +++       R                D +   I
Sbjct: 14  PESVSDFLN-YLETI--RSKSPNTIDAYKIDLTLFFRFLCVYRGLVKNDIEFEDINISNI 70

Query: 115 TTKHIRSGVES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161
             + ++S                R ++  +  + + +++  FK+   + + ++ NP + +
Sbjct: 71  DNEFLKSIKLRDLYAFLSFVEKYRNNSSYARARKVATLKSFFKYLFGKAKIISDNPAMEL 130

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           E PK         T            +      +      F L  G+R S+ C   ++ +
Sbjct: 131 ESPKINKRHPVYLTLNQSIALLESLDKDDKNYARDYCILTFFLNCGMRLSELCGIQIEKI 190

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNAT 267
           + +I SI  +      TV L +  ++ L                K+  F++     +N  
Sbjct: 191 RGDILSIVGKGD-KERTVYLNEACLRALNNYLSVRDDSKASYENKKYLFLSARNAPINKR 249

Query: 268 QFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYT 323
              I  K   T AG      + H +R  +AT+    G      L +  G + +   + YT
Sbjct: 250 TVEIMIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYT 309

Query: 324 KGAD 327
              D
Sbjct: 310 HVDD 313


>gi|210610949|ref|ZP_03288674.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787]
 gi|210152249|gb|EEA83256.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787]
          Length = 429

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 114/365 (31%), Gaps = 33/365 (9%)

Query: 10  FVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           F+T  +  + GK    F   + + I+     +  F     +       +           
Sbjct: 13  FMTAYKDEKTGKWFAKFYYTNWQGIK-KQKWKRGFATKKEAL---GFERDFLEKQSANPD 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T + L   Y +      L  ++ ++ ++     I+   G     +I    +R       
Sbjct: 69  MTFQNLYEIYMEDTAAR-LKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLM 127

Query: 128 HTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQ 181
            +P     +   +  T +  +  +A R   +  NPC       +   E +  WT ++   
Sbjct: 128 SSPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYDEYIA 187

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIK 225
           F+    + S   + FE L ++G+R  +                S     Q ++       
Sbjct: 188 FREGVKDKSLSYICFEVLYWTGMREGELLALSPADIDLDNKTISINRTYQRIEGKDVFTS 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +   +   + +PD   + L+     +     +     +  +  S           V K 
Sbjct: 248 PKTRKSKRKIPIPDFLCQELSDYIQSRYMPDADERLFPVTKSYLSHEMIRGCKNTDVKKI 307

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             H +R   A++  + G  A  L    G + V     TY+      +   +    + S+ 
Sbjct: 308 RIHDIRHSHASLLINQGCDALMLADRLGHEKVSTTLNTYSHLFPHKQ--QELVHSLESLQ 365

Query: 344 DSDDP 348
            +D P
Sbjct: 366 ATDSP 370


>gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 91/285 (31%), Gaps = 32/285 (11%)

Query: 74  LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVES---RK 127
            +  + +       A  N+  ++    +      G    D      + + +  +    R 
Sbjct: 8   WVDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P++A +  +++R  +++ + + +   +P   V  PK      +   + ++++  +  +
Sbjct: 68  LSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAAT 127

Query: 188 E----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                      G +     E +  SGLR S+     +  L  +    I   K G      
Sbjct: 128 APNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAP 187

Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           L D     +                     F       ++ A +        A  AG+++
Sbjct: 188 LNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDR 247

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 248 DKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 292


>gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 336

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 24/292 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTP 130
           +Y +       + ++  +++     +                  T + I +    +    
Sbjct: 47  DYLRIEKQA--SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 104

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWS 187
            S    L ++R  F + +RQE +++NP + ++ PK      +    E  +Q  +      
Sbjct: 105 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEP 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     E +  SGLR S+     +  +      ++   K      V +    ++ L 
Sbjct: 165 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 224

Query: 247 MTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                +  F   ++         +++     +  +    K G+  +   H +R   AT  
Sbjct: 225 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
            +A      +    G   +   + YT   D   L      +   +     DD
Sbjct: 285 LEASGDLRAVQELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 335


>gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
 gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC
 gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC
 gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC
 gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80]
 gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457]
 gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395]
 gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2]
 gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395]
 gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9]
 gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33]
 gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286]
 gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236]
 gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10]
 gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101]
 gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27]
 gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1]
 gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757]
          Length = 311

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 101/311 (32%), Gaps = 24/311 (7%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115
             +     P  L   +  +    H    L++ ++ +++   + + +     G   + ++ 
Sbjct: 2   KNDERTPLPDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLD 61

Query: 116 TKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +  +R      + +    SS    L+S+R    + + +  +  NP   V  P+++    +
Sbjct: 62  SAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPK 121

Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               ++M Q      +     + R   E +  +GLR ++     ++ +  +   I+    
Sbjct: 122 NLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGK 181

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKA 280
                 V       + +      +           F++    +++             K 
Sbjct: 182 GNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQ 241

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNS 336
            V  + S H +R   AT   ++      +    G + +   + YT   D   L      +
Sbjct: 242 AVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQHLAQVYDQA 300

Query: 337 RRISSVVDSDD 347
              +   + DD
Sbjct: 301 HPRARKKNKDD 311


>gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 276

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 20/264 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
              +EY +      L+  S  S+ +   Q+  + GD    K+ T+ I + +    +   +
Sbjct: 10  EAFAEYLQIV--KGLSPKSIDSYLTDLRQLAEEQGD--LLKLETESILAFLSRFDNK-RT 64

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SE 188
             + L S+     +  R++         +   +      +  + E+++    +       
Sbjct: 65  LNRKLASINAFVNFCHREKLGTSRV--KIPMARVPKTLPKYLSHEEIEAGLRYIDRSTPI 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G +      FL  SG R S++       L +    I+  K      V L    +K L   
Sbjct: 123 GRRDYALILFLYASGCRISEALAVQRGDLVDGWLKIRYAKGARERMVPLAPAALKALEEH 182

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                I     ++N   + ++        +       +  S H +R   AT     GA  
Sbjct: 183 LKESDIASPYLWLNYRGEPLSRVSAYKIVRKY-----LGVSPHVLRHSFATALILGGADL 237

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
             +    G  ++   + YT    +
Sbjct: 238 RVVQELLGHSSLITTQIYTHIERQ 261


>gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 91/282 (32%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128
           Y         +A N+  S+     +  +     G  D  K+    +   + + +      
Sbjct: 13  YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGIHDLAKVGEDDVSEFLVALRRGDPDA 72

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA + L ++R L ++A  +    ++   +V  P       +  T + +    
Sbjct: 73  GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132

Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                 S        + R   E L  +G R S++    V  + +   S+    K G    
Sbjct: 133 EGAGGDSASDGPLTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLRGKGGKQRL 192

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV- 282
           V +    ++ L    +                F+N    +++        +  A +AG+ 
Sbjct: 193 VPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIS 252

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           Pf0-1]
 gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC
 gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 92/295 (31%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127
           +  Y +       ++ ++  ++    D+++        G +    I   + + + + ++ 
Sbjct: 5   LDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCIKQNIGSWQALDIQRLRSLIARLHAQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRALQLLEGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L   +       K      + +     
Sbjct: 125 EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGKKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L              +  F++   +++      +  K    +  G N   H +R   A
Sbjct: 185 EALEQWLPLRALTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L         R   +   D
Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLAAVYDSAHPRAKRMKGDD 298


>gi|218461906|ref|ZP_03501997.1| phage integrase [Rhizobium etli Kim 5]
          Length = 383

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 96/353 (27%), Gaps = 23/353 (6%)

Query: 18  HGKIIYYFRKGHGRRIR------LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP--- 68
            G   Y  +   G R R            +    A    L G     +   S R      
Sbjct: 18  SGAKYYGLKTRIGGRQRWITIGRHGSLWTTDGARADALRLLGQKAAGKDPASERDHRKQA 77

Query: 69  -TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126
            TTL+ L   +        +   +   +E    + II   G      +    I       
Sbjct: 78  VTTLRELCERFLADYAETHVKAKTAKDYEQLIRKLIIPALGRHGIADLKRSDISQFHHDL 137

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           +  P    + L  +  +F  A +      N       PK +      +      +     
Sbjct: 138 RDRPYLGNRALAVLSKMFNLAEQWGLRDDNTNPCRHVPKFRESKRERYLTNGELKRLGEV 197

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
                +  +E      A   L+ +G R S+  +   +H+      ++    KTG    V 
Sbjct: 198 LAQAETSNTESPHMIAAIRLLILTGARLSEITKLQWEHVDLEHGLLRLPDSKTGKKDIVL 257

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                  L  +       + I   +   +       +     KAG++    H +R   A+
Sbjct: 258 NDAALDVLKKLPRASGNPYVIVGGRSGQHLVNVKGPWGRLRKKAGLDDLRIHDLRHSFAS 317

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
           ++A  G +   +    G         Y     D +R          S   + D
Sbjct: 318 VAAGMGESLPIIGKLLGHTQTQTTARYAHLQMDPLRAASNAIGAAVSSAMNPD 370


>gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
 gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61]
 gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3]
 gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52]
          Length = 300

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126
            L  EY +     + +  + + +    +Q  R     G     +++   +R  +      
Sbjct: 9   QLFMEYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    S  + ++S+R  +K+ +R+  VA NP      PK++ +       ++++      
Sbjct: 67  QLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALFLVN 126

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
            E +    +     E L  +G R S+ C   +  +     ++    K      V      
Sbjct: 127 DENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPA 186

Query: 242 MKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L                      F+N     +               A +  N S H
Sbjct: 187 REALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
 gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1]
          Length = 291

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 93/275 (33%), Gaps = 18/275 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE---SRKH 128
           I ++ +      +++ ++  ++      +   + +   D  ++    +R  V     R  
Sbjct: 4   IQDFLEHLRVERAMSPHTLDAYRRDLQALQDWAFERGEDVVRMDGGRLREFVASEHRRGL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSF 185
           +P+S  + L++ R  + W ++   +  +P + +  P+   +  +    ++  Q     + 
Sbjct: 64  SPTSLQRRLSACRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLVEVDTS 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKL 244
              G + R   E    SGLR S+ C    + L  +        K     +V +     + 
Sbjct: 124 APLGLRDRALLELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQRSVPVGSHARRA 183

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
           L            +  F       ++     +  +  A + G+  +   H +R   A+  
Sbjct: 184 LEEWRSSTGAGSDDFVFPGRGGGPISQRAVQVRMRQLAARQGLFKHVHPHMLRHSFASHV 243

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++      +    G   +   + YT   D   L 
Sbjct: 244 LESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 277


>gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 294

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 24/273 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
            + EY +       L+ ++  S+ +     +  + + +    R++    +   V   +  
Sbjct: 4   YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A   L     +R  F++ VRQ  +  +P   ++ PK + +  +  T E + +  S  
Sbjct: 64  GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
             G+    + +   E L  SG++ S+     V  +Q  +  ++     G    + +    
Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERILPITPIA 183

Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            + +A+         + +             ++    F    K     A ++   + H +
Sbjct: 184 AESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDITPHTL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R   A      GA    +    G   +     Y
Sbjct: 244 RHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY 276


>gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
 gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823]
          Length = 293

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 90/260 (34%), Gaps = 21/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
              + ++ +++E   +Q +  S      ++R++  + +R+ V     +     +  + ++
Sbjct: 15  KRYSKHTILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWVVGLLESGQSNRTVSRKIS 74

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQPR 193
            +R  FKW + +  +  NP L +  PK +    +   + ++   +         EG + R
Sbjct: 75  CLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEIDGARIEGLFSSNFEGVRDR 134

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L FE    +G+R S+      + + +        K      + +     +++      K 
Sbjct: 135 LMFELFYQTGIRLSELIELKNKDVSSVSIK-VLGKRNKERIIPIGQELHEIILAYQSIKP 193

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATA 304
               +     +      +  K    K             KS H +R   AT   + GA  
Sbjct: 194 GGPDSQILLFVKKDGRKLSPKFVYRKINTYLGSVTNVQKKSPHILRHTFATHMLNNGAGL 253

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G   +   + YT 
Sbjct: 254 ETLKELLGHANLSATQVYTH 273


>gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 301

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV---ESR 126
           I  +     +    ++++  ++    D  +             K    HIRS +     +
Sbjct: 4   IQRFLDYLQYEKRYSLHTIKNYRRDLDDFLSFYQIEESSDSIEKAEKNHIRSFIISLSDK 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------ 180
             +  S  + L+S+R  + + ++   +  +P L ++  K K E I P+T+++MQ      
Sbjct: 64  NISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFELE 123

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-----GVQHLQNNIFSIKTQKTGTIITV 235
                  +G + RL       +G+R  +  +       ++  +  +   + ++    I  
Sbjct: 124 NIFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIGE 183

Query: 236 ELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
            L   F + L +                      +K    + + +      K    KS H
Sbjct: 184 NLVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKH--KKSPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA  + L    G  ++   + YT  +
Sbjct: 242 VLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSS 280


>gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 86/281 (30%), Gaps = 28/281 (9%)

Query: 75  ISEYRKSAHWGS-LAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSS 132
           + +Y +   +   L  N+  ++     Q       D   ++    +I    +  K    +
Sbjct: 7   VEKYLEYCEFRKELDWNTLKAYRIDLRQFFEYTMEDIPGKEKIEDYITELHKKFKQK--T 64

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------------RPKRKTEGIRPWTKEDM 179
             + + S++  + +   +E ++ NP   ++               +   E +     ++ 
Sbjct: 65  IKRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEELLNFMYAQEN 124

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
           +          +     E L  +G R  +        +  N   I+   K G    +++ 
Sbjct: 125 KSNVKVHKFWLRDIAVIETLFATGARVYEISNIREDSVNLNTGLIRLMGKGGKERYIQIA 184

Query: 239 DGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
              +  L      +          FF+NN   +       +  K     AG+ +  + H 
Sbjct: 185 SSEILDLLKNYYKENAKEIKQSGFFFVNNRGCRYTEQSIRLMLKKYTKLAGIERNITPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT   + G     +    G  ++   + Y   A + 
Sbjct: 245 FRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKK 285


>gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 80/269 (29%), Gaps = 15/269 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             Y +       + ++  ++ +YF   +         ++    I   +      +K + S
Sbjct: 94  EGYLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRSIDRLKVADINKYILYLVNEKKISVS 153

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++    +  + +         + R K         +++++++         +
Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTLPEVLSRDEVKRIL-SCLTNQK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246
                  +  +GLR S+      Q + +    ++    G          ++     +   
Sbjct: 210 HHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYFK 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F  +   ++ +A+      K  A +AG+    H   +R   AT   + G   
Sbjct: 270 EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G   +     Y       +  I
Sbjct: 330 RTIQELLGHNDIKTTSIYLHVTSAHKSSI 358


>gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128
           Y         +A N+  S+     +  +     G  D  K+    +   + + +      
Sbjct: 11  YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA + L ++R L ++A  +  V ++   +V  P       +  T +++    
Sbjct: 71  GTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130

Query: 184 S--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                          + R   E L  +G R S++    +  +  +  S+    K G    
Sbjct: 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRL 190

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
           V +    +  L    +                F+N    +++        +  A +AG+ 
Sbjct: 191 VPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGIT 250

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 251 AGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10]
 gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK 127
             L  E+ +        +  ++ +++   +     +++SG+ D   +  + +R  +    
Sbjct: 4   DQLQEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S     + + S+R  +++  + E V  NP   +   K+  +  R + +++M     
Sbjct: 64  ERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQ 227
                     + +   E L  SGLR S+     +  +               + +     
Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
                +   L  G  +L+       E  F+N+    + AT           K+ ++    
Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442]
 gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC
 gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442]
          Length = 305

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123
                  Y ++      + ++  ++    +++                + ++ +   + +
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSRRDFTAAL 65

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_005I08]
          Length = 422

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 100/359 (27%), Gaps = 39/359 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLKWL 74
            G+  ++    HG       P            + G+    +     R       T+  L
Sbjct: 55  GGRQRWFTIGRHG------SPWTVEKARTRAKRIIGNIADGKDPAKDRDADKNKPTVAEL 108

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
              Y +         +S  S +    + ++   G      +T   I     + K   SS 
Sbjct: 109 CERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSSR 168

Query: 133 ------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                             A + L  +  +F  A R  + ++         +        +
Sbjct: 169 ERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAERWGWCSVGSNPCRHVDRYPENKREKF 228

Query: 175 TKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227
             +              SE      A   L+++G R  +       H+      +     
Sbjct: 229 LSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHVDMERAMLLLPDP 288

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           KTG             L  +  +      I  +K   +       +     +AG+ +   
Sbjct: 289 KTGQKAVFLSAPALDVLANLPHMKNNPHVICGEKDGSHLVNLQKPWGRIRKRAGLEDVRL 348

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVV 343
           H +R   A+++A  G +   +    G         Y    AD ++   +   +RI++V+
Sbjct: 349 HDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHLAADPLKAANEAIGQRIAAVM 407


>gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217]
 gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217]
          Length = 323

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 93/294 (31%), Gaps = 33/294 (11%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSG---VESR 126
             +  + ++       A N+ +++              +     +    I S     +++
Sbjct: 6   AWVDLFLEAQAAELGAAKNTLMAYARDLRDFTDWVKYQNLSLDNLMQPDIESYLVQCDAQ 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
              P++  + L+++R L+++A  +   A NP + ++ P +     +  T++++ +     
Sbjct: 66  GLAPATRARRLSAIRQLYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEVA 125

Query: 184 --SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                +   + R A    L   +G+R S+     +   + +   +    K G    V L 
Sbjct: 126 PQHGRTATERCRNACLMALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMVPLS 185

Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 L                         F        +   +F    K  A KA V
Sbjct: 186 PPARTALVDWLALRDAEETARRSKGLAPSPFLFASGGTAGYLTRHRFYNLIKEFAVKAHV 245

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +    + H +R   AT     GA    +    G   +   E YT   +     +
Sbjct: 246 DPEKVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQAL 299


>gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
 gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83]
          Length = 308

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 23/270 (8%)

Query: 87  LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
           L  NS  ++     ++       +  +R+++ ++++  V        +  S  + ++ ++
Sbjct: 20  LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFE 197
             F++ V +EY+  +P   +E P+         T E++ +             + R   E
Sbjct: 80  SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQGAQRNRAILE 139

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI------ 250
            L   GLR S+       +L  N   ++          V + +  +  L           
Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199

Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                +E  F++N  + ++     +  K  A +AG+ KS   H  R   AT   + GA  
Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIK 334
             +    G + +   E YT   DR  L  +
Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETLRHE 288


>gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
 gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio
           sp. JE062]
          Length = 319

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 77/285 (27%), Gaps = 30/285 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           +   I ++         LA  +  ++E    Q +R                 +  K  R 
Sbjct: 19  VTAAIEDWIDHLGSERRLAERTLEAYERDTRQFLRFMTSYEGEPVALRHLESLKPKDFRG 78

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R+   +        L  +R    +   +  V      +V  P+      +P   E+
Sbjct: 79  FLATRRKDGAQTRTLARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRLPRSLPKPIPVEE 138

Query: 179 MQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
            +        F+      ++    F  L   GLR S++                    K 
Sbjct: 139 AKAIVSSDLAFEDTPWVEARNAAVFTLLYGCGLRISEALSLTPATAPKEGDKSLKVRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV 282
                V +    ++ +             N            NA    +  +   +  G+
Sbjct: 199 NKERLVPVLPVVVEAIEAYKDQCPYDLSANSPLFRGVRGGALNARMIQLAMQKIRSALGL 258

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + H +R   AT     G     +    G  ++   + YT+ 
Sbjct: 259 PDTATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEV 303


>gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 392

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 103/365 (28%), Gaps = 54/365 (14%)

Query: 11  VTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +   + +  + +  +     R G  R+ +  +         Y+  + G        +   
Sbjct: 4   IKPYKDQKNEWVLRYDSSDPRTGERRQHKKRFTGTKREANKYLQRILGEIE---SGSYSD 60

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
               T+K  + ++  +     +L   +  S+ S  +  II   G      +   HI    
Sbjct: 61  LGNITIKQYLDKWINAYCTPTNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADYY 120

Query: 124 ESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         +P++ +     +    K AV Q+Y+  NP   V+ P++    I+  
Sbjct: 121 ALMSKSRTEGGAGLSPTTVLYHHRILHQALKHAVNQDYLKQNPVAKVQPPRKNRPDIKVL 180

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +  +  ++        Q  L     L +G+R ++      Q++  +  ++          
Sbjct: 181 S-VEQARYLIARYSEEQIYLPVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQE 239

Query: 235 VE------------------------------LPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                             D + ++L      +       D +  
Sbjct: 240 NRLELKEPKTKKSRRSIPVPEQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPY 299

Query: 265 NATQFSIWFKAKA---TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +       +        K       H +R   ATI          +    G +++    +
Sbjct: 300 DPEWIGKQWAKLVASDDKIPNGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGD 359

Query: 321 TYTKG 325
            Y+  
Sbjct: 360 IYSHV 364


>gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 311

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 86/272 (31%), Gaps = 29/272 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHT---P 130
                 A N+  S+    ++ I        R +T + I        R     R       
Sbjct: 18  KKERRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQANIEA 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
            +  + L++++  F++  R   +       + RPK K+   R  T+  +Q+   ++    
Sbjct: 78  VTNARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDYYALLD 137

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +       L   GLR S++     Q+++     I  +++   I   LP     L
Sbjct: 138 TDWIVKRDFALIVLLYGCGLRISEAVNLKFQNIRREELLIIGKRSKERILPILPIVRQSL 197

Query: 245 LAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                       +N+ K +             T F+   +    + G+    + H  R  
Sbjct: 198 DEYVRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPDVITPHAFRHS 257

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G   +   + YT 
Sbjct: 258 FATHLFLGGADIRSIQELLGHANLSTTQIYTH 289


>gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum
           ATCC 27405]
 gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20]
 gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360]
 gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20]
 gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313]
          Length = 330

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 104/317 (32%), Gaps = 44/317 (13%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118
            +I ++          + N+   +        R                  D + +    
Sbjct: 11  AIIKDFLSYMETIRGKSKNTIHEYYYDLRLFFRFMKIHFGLEDSKKDFDSIDIKDMDIDV 70

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165
           I+                 R +T SS  + + S+R  F +   + + +  NP   +E PK
Sbjct: 71  IKKITLSDIYSFMSFLSRERDNTASSRARKVASIRSFFNYLTNKAKLLEQNPAAELESPK 130

Query: 166 RKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                 R    E+ ++           +        L  GLR S+     + +++N++ +
Sbjct: 131 IMKRLPRYLNIEESKRLLGSIDGEHKERDFAIITLFLNCGLRLSELVNINLSNIKNDVLT 190

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKA 275
           +  +      T+ L     K L      +    + +          Q+++        K 
Sbjct: 191 VVGKGN-KERTIYLNAACKKALDAYLKVRPVDGVKDKNALFLSSRKQRISNKTVQHIVKK 249

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG-ADRIR 330
               AG++    S H +R  +AT+    G      L    G +++   E YT   + +++
Sbjct: 250 YIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQLK 309

Query: 331 LGIKNSRRISSVVDSDD 347
             ++ S  +S+ VD  D
Sbjct: 310 NAVE-SNPLSTYVDEHD 325


>gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
 gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 29/296 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITT 116
           + +      T    +  + +      LA N+  ++                         
Sbjct: 2   LAASLAAIDTFVDAL--WLED----GLARNTLAAYRRDLTLYATWLAQQQPALALDSTAE 55

Query: 117 KHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            H+++    R      +SA + LT +R  F WA+R+  ++ +P + ++  ++     +  
Sbjct: 56  HHLQAYFAERHAQTRATSANRRLTVLRRYFHWALRERRISADPTVRLQAARQPLRVPKTL 115

Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           ++  ++   +    GS    + R   E +  SGLR ++        L      ++     
Sbjct: 116 SQAQVEALLNAPDVGSALGLRDRTMLELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKG 175

Query: 230 GTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATK 279
                V   +     +                 +  F+ +    M    F +  K  A  
Sbjct: 176 SKERLVPFGEEARNWIERYLHEARGAILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAV 235

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AG+    S H +R   AT   + GA    +    G   +     YT  A      +
Sbjct: 236 AGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKAL 291


>gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A]
 gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 37/290 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
              +++++ +++S  +Q               +++   IRS + S         +  + +
Sbjct: 14  KKSSLHTQKAYQSNLEQFEAFLLSEGSKASLEEVSYSEIRSWIVSLIQKGNSTRTVNRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192
           + +R  +K+ +R   +  +P    +  K  T+   P++++++ Q            G   
Sbjct: 74  SVLRSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLDSGHFPDSYLGVLQ 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +       Y+G+R S+     + ++  +        K      + L       L +    
Sbjct: 134 KTILSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERLIPLLPEIKVELQLMLDC 193

Query: 252 KETFFINND-------------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +    I+ +                      + +F   +TK    +S H +R   AT   
Sbjct: 194 QVRNNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTKT--KRSPHVLRHSFATHLL 251

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           D GA  + +    G  ++   + YT  +           +I  V  S  P
Sbjct: 252 DQGADLNSIKDLLGHSSIAATQHYTHSS---------MAKIKEVYKSAHP 292


>gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
 gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101]
          Length = 324

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRS---GVESRK 127
            IS + ++       + N+++++                D+ + T   +       +++ 
Sbjct: 8   WISTFLEAQAAELGASTNTQLAYGRDLKDFDSFLAGRHLDFARATRDDVERYLVWCDAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              S+  + L++++ ++++A  + + + NP + +  P +     +  ++ ++ +      
Sbjct: 68  LAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHEVDRLLEAAR 127

Query: 187 ------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                  E  +     E L  +G+R S+     V   + +   +    K      V L  
Sbjct: 128 GSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMGKGNKERLVPLSP 187

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM----------------NATQFSIWFKAKATKAGVN 283
                L    I ++        +K                    +F +  K  A   GV+
Sbjct: 188 PARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGYLTRHRFYLMIKEFAVAGGVD 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT     GA    +    G   V   E YT   +          R+S
Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLE---------ARLS 298

Query: 341 SVVDSDDP 348
            +V  + P
Sbjct: 299 ELVLENHP 306


>gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
 gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707]
 gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27]
          Length = 305

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 24/280 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KH 128
           +  +  +      LA N+  ++    ++  R              + + + +  R     
Sbjct: 16  LERFLNALWLEEGLAENTLAAYRRDLERFSRWLHSQGRTLIGAQREDLLAYLAHRLEGGD 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
              S  + ++S+R  +++ + ++    +P   VE P+         ++E+++   +    
Sbjct: 76  KSRSVARSVSSLRRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEVEALLAAPKT 135

Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243
               G + R   E L  +GLR S+     +  L         + K      V L +  + 
Sbjct: 136 EDSLGLRDRTMLETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKERLVPLGEVALS 195

Query: 244 LLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            L                 E  F+      M+   F    K  A ++G+ K  S H +R 
Sbjct: 196 WLDRYCREARLGLVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKALSPHTLRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AT   + GA    +    G   +   + YT  A R RL
Sbjct: 256 AFATHLLNHGADLRVVQILLGHADLSTTQIYTHVA-RARL 294


>gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 357

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 129/352 (36%), Gaps = 22/352 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYIN 62
             R    VT    RHGK+   FRK     + +   P E  F   Y + L      R  I 
Sbjct: 2   KTRY-KNVTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLAN----RPLIV 56

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                P ++  L+S Y  S  +       ++   +   D   +   D        +HI +
Sbjct: 57  VRPAVPGSVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEA 116

Query: 122 G------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT- 168
                         +       +A++    +R LF +A + +++  NP        ++  
Sbjct: 117 ILLARTEKRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKL 176

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            G   WT++++ QFK+    G++ RLA E +L++G R  D+   G  H+     +    K
Sbjct: 177 TGFHTWTEDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAK 236

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSA 286
               + + +     + +          F+     K      F    +    +AG+   +A
Sbjct: 237 NQADLWLPIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTA 296

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           HG+RK      A + AT  E+ A  GWK   +   YT  A++  L      R
Sbjct: 297 HGLRKAIGRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQEGLADGAMSR 348


>gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 353

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 111/355 (31%), Gaps = 38/355 (10%)

Query: 13  KERTRH---GKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           KE+ +    G+    F         +RI     +       Y         K+  +++  
Sbjct: 5   KEKIKGEYTGRWNARFTIKLLNNKSKRIFKRGFNSKKEALEY--------EKKVILDNSL 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                 K  ++++ +      +   + ++  +  + I     +     IT   I +    
Sbjct: 57  GSNIPFKVAVNQHLEFKKLR-IKELTYMNMSNILNSI-TYFDNLLISDITPIQISNFQND 114

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             RK+  SS       +++LF W VR + +  NP   V+R K +T+        D     
Sbjct: 115 LLRKYKGSSIRTINAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVDEFNQI 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQ 227
                    +L F+ L ++GLR  ++    +  +  N                      +
Sbjct: 175 VEQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTNLSGKSIITTPK 234

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSA 286
             G+I  +++ D  +  +       +    +N   + N   +   FK       G +   
Sbjct: 235 TKGSIRVIKIDDVLLSEIKDYIDKAKYILDDNFIFRFNKASYRYNFKNATIKVLGRDLRV 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339
           H +R   A+   + G     +    G          Y+    DR    I    ++
Sbjct: 295 HDLRHSHASFLINNGVDILLISKRLGHSNTAMTLNVYSHLYPDRENEAINLINKL 349


>gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
 gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC
           29799]
          Length = 409

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 113/367 (30%), Gaps = 47/367 (12%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +  +G+    + +G     GR I+      +        A      +   +N    +  
Sbjct: 13  RKKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGIPVNH--NEDY 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+      + ++     +  N+  ++E+   + I+   G    +++T   I+      K 
Sbjct: 71  TVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKT 130

Query: 129 ---------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          + S+  +    +    K AV++  +  NPC +   P ++ + +  
Sbjct: 131 NGRVQRFEKKTDTALSGSTVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMAI 190

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HL 217
              E +  + S   +     + F   L SGLR  +                        +
Sbjct: 191 IPSEKLGVYLSEAEKYGVLPMFFLE-LSSGLRRGELLALRWDDLNVKDRILSVSKQVTRI 249

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWF 273
              +   + +   ++  V L    + +L           I     +     +    S   
Sbjct: 250 DGELVITEPKTKNSVRKVALSQQAVDILVREHEQHPDNPILFPSPRTGGYWSPDAVSRIN 309

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRI 329
           +    KAG+      H +R   AT++  +G     L +  G  +     +TYT    D  
Sbjct: 310 RKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQ 369

Query: 330 RLGIKNS 336
           R   +  
Sbjct: 370 RGAAEKI 376


>gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217]
 gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217]
          Length = 321

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 86/298 (28%), Gaps = 43/298 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDY 111
              Y  S     L+  +  ++     +                             D  +
Sbjct: 10  FERYLTSE--RQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTDEQW 67

Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             ++ + +++ +        +P S    L++++  F++ + ++ +  NP   +  PK+  
Sbjct: 68  LALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAK 127

Query: 169 EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224
              +    + +    +   +     + R   E    SGLR  +        +        
Sbjct: 128 PLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVK 187

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAK 276
              K G    V +    M+ LA+    +           F++N  ++++           
Sbjct: 188 VLGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKW 247

Query: 277 AT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                  V    H +R   AT   ++      +    G   +   + YT   D   L 
Sbjct: 248 GQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYT-SLDFQHLA 304


>gi|307691997|ref|ZP_07634234.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 409

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 109/367 (29%), Gaps = 47/367 (12%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            R  +G+    + +G     GR I+      +        A      +   +N    +  
Sbjct: 13  RRKPNGRWEGRYTQGIDPNTGRAIQKSVSARTQAECKEKLAKAIRDNRGIPVNH--NEEY 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+      + ++     +  N+  ++E+   + I+   G    +++T   I+      K 
Sbjct: 71  TVAEWCRLWFETYSKPVIRPNTAKTYENMIENHIVPAIGGVKLKRLTAIQIQKMYNDSKT 130

Query: 129 TPS---------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +                 +  +    +    K AV++  +  NPC +   P ++ + +  
Sbjct: 131 SGRVQRFERKTDTALSGSTVRRIHMVLSSALKQAVKERIIPYNPCDNCRIPPKEKKEMTI 190

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
              E +  + S   +       F   L SGLR  +        L      +   K  T  
Sbjct: 191 IPPEKLGVYLSEAEKYGVL-PMFYLELSSGLRRGELLALRWDDLNVKDRILSVSKQVTRI 249

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWF 273
                            V L    + LL           I     +     +    S   
Sbjct: 250 DGELVVTEPKTKNSVRKVALSQQAVALLVQEHEQHPDSPILFPSPRTGGYWSPDAVSRIN 309

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRI 329
           +    KAG+      H +R   AT++  +G     L +  G  +     +TYT    D  
Sbjct: 310 RKLLAKAGIEERVRFHDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITNDMQ 369

Query: 330 RLGIKNS 336
           R   +  
Sbjct: 370 RGAAEKI 376


>gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
 gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 12/264 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + +++EY  S    + A  +   + S+ ++   +    +   +T++ +   V        
Sbjct: 21  RKILNEYLLSLKLANKAEATISKYRSFLERFCSEC-LVELDSLTSEDVLKWVNKFSVGKK 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSE 188
            S+ I  L+ +   FK+ + ++Y+          PK      R  T+++  + K      
Sbjct: 80  ESTVINVLSILSSFFKFCLAEDYMDSIVMRKRWVPKLPQPLPRFLTEQEYARVKMASEQL 139

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
             + R    FL  SG R S+     +Q++     +     K   I  V        +L  
Sbjct: 140 SLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVLKD 199

Query: 248 TPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
               +     E  F+N   +K+  +            AG+ +S   H  R   AT     
Sbjct: 200 YLWTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFATNMLAK 259

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA    +    G   ++    Y +
Sbjct: 260 GAELEFIADEMGHTNLNTTRVYAR 283


>gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 302

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 98/281 (34%), Gaps = 29/281 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITT-----KHIRSGVESRKHTPS 131
           + +   +   + +++ ++E+     +    G+  +  I       +   S    + H  +
Sbjct: 15  WLEH--FRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIRKGHARA 72

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           S  ++  S+R+   WA++Q ++  +P L ++  K      +  + E + Q  +   E   
Sbjct: 73  SVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLVETAQ 132

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  +     E L   G+R ++     +  +  +  +++          V      +
Sbjct: 133 TGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVPFGTPAL 192

Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           + L           +N              +++        +    +AGV   S HG+R 
Sbjct: 193 ESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPVLSPHGLRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AT   + GA    +    G  ++   + YT   D +RL 
Sbjct: 253 CAATHMLEGGADLRTVQDMLGHASLATTQRYTH-VDAVRLS 292


>gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Boryong]
 gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128
           L+ +I+E+      + + ++N+  S+ +   Q +    D+ +  ++ T H+ S       
Sbjct: 7   LEKIITEWLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMR 66

Query: 129 TPSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--- 174
           +  S    L             +R  +K+  +Q  +      +V  PK      +     
Sbjct: 67  SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIE 126

Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSI 224
                  ++    +    G++ +     L   GLR S++             +     + 
Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSESLIIKGKGNK 186

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                   IT +L   ++ L+  +       F+    +K+    F         +  +  
Sbjct: 187 IRLIPWLDITKQLVSDYVNLVPYSLTENSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLPE 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + H  R   A+   + GA    +    G +++   + YTK
Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288


>gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 312

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 30/300 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSG---VES 125
            + +          +  +  ++     Q               + I    + +    +  
Sbjct: 12  ATAFLAHLDVEKGFSGATLQAYSKDLLQWEEFLQTRNKTCASPQDIVRADVHAFLVQMHK 71

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + SS  + L+S+R  F++  +Q+ +  NPC  V  PK++         +   +    
Sbjct: 72  LNLSKSSMARKLSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVLNVDQALEMVQA 131

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                   ++     E L  SGLR S++    +  +      ++ Q          L   
Sbjct: 132 QLEPSPRNTRDLALAEVLYGSGLRVSEALSLDLDDVDQGQSLVRVQGKGRKERLAFLTRP 191

Query: 241 FMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287
            ++ L+     +  F  +             +++  +     +      A   GV  S H
Sbjct: 192 GLERLSQYIALRHAFEPDLREKALFLGMRGGRLHRREAVRIIQRLGQIFARAQGV--SPH 249

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
            +R   AT    AGA    +    G   +   + YT    D++      +  ++   D +
Sbjct: 250 TLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLAREKDKN 309


>gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
 gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180]
          Length = 320

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 83/282 (29%), Gaps = 25/282 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127
           I  +         L+ ++  ++    +QI          G      +    IR     R 
Sbjct: 19  IERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEPGAEPIASLDEAGIRRYTAWRH 78

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  +  + L+S+R  ++W +R+     NP + +  PK   +    +  + +     
Sbjct: 79  RQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALLD 138

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
              E     +     E    SGLR ++     +  +  +        K      V +   
Sbjct: 139 PVDEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSRRVPVGRK 198

Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + +              +   F++    +++           A + G   +   H +R
Sbjct: 199 AREAIERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASRHLHPHLLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+   ++      +    G   +   + YT   D   L 
Sbjct: 259 HSFASHLLESSGDLRAVQELLGHTDIGTTQIYTH-LDFQHLA 299


>gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
 gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM
           12614]
          Length = 319

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 79/289 (27%), Gaps = 30/289 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVES 125
           + ++         L+  + +++E    Q +R   +         +   +     R  + S
Sbjct: 23  VDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKEIAALRPADFRGFLAS 82

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           R+       S  + L  +R   ++  R+  V      +V  P++     +P + +D    
Sbjct: 83  RRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQARSLPKPVSSKDAIDV 142

Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTII 233
                  +S     ++       L   GLR S++                    K G   
Sbjct: 143 TSGELAMESEPWLEARNAAVLTLLYGCGLRISEALSLTGAMAPRTGTKTLRVVGKGGKER 202

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284
            V +     + +                         +N     +         G+    
Sbjct: 203 IVPILPAVCQAVEHYLKLCPYAISPGGPLFLGARGGPLNPRMIQLAMARLRGALGLPDSA 262

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + H +R   AT     G     +    G  ++   + YT+      L  
Sbjct: 263 TPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAA 311


>gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
 gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM
           17241]
          Length = 402

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 93/365 (25%), Gaps = 42/365 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M         + ++R   G+                  Y    T     +  L       
Sbjct: 1   MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKQNGEPIFRYVLAKT-QKELLDKLHRDLEAF 58

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           + +        TL   +  + +     +L  N+  S+E +    I    G+    ++T  
Sbjct: 59  QDVELTEDSRMTLGEWLDRWMEDYGAATLRPNTLRSYEQFIRCYIKPYLGNKIVSRVTRM 118

Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            I+      KH                   ++    +    K A     +A NP      
Sbjct: 119 DIQKLYRKLKHEGRVREHPEHGHELSDTMVLRIHAMLHRCLKDAEAAHVIARNPTDGAVV 178

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
           PK      +  TKE M+ F +        R  F   L +GLR  + C    Q        
Sbjct: 179 PKANHRPKQILTKEQMETFLAAVERNEIWRDFFYTELTTGLRRGEICGLMWQDFDEKAGT 238

Query: 221 ------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                    +    +         +                 ++
Sbjct: 239 LKILRSVNVPKAGELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEPLAPEK 298

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            +  +    W K    +AG+     H +R   AT +  +G  A  L    G        +
Sbjct: 299 PVRPSAAYYWMKRILREAGLPTIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLD 358

Query: 321 TYTKG 325
           TYT  
Sbjct: 359 TYTHV 363


>gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D]
 gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 24/283 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK- 127
              I  +  +      LA N+  ++                   +     +     +R  
Sbjct: 6   ADAIQRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAARGKSIAETEDGDLADYFAARHA 65

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SSA +  T  +  F+WA+R+  V+ +P   +   K+     +  ++  ++   +  
Sbjct: 66  ESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQPPRFPKTLSETQVEALINAP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240
              +    + R   E +  SGLR S+        +     +  +   K G    V     
Sbjct: 126 DVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGKDRLVPFGAE 185

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               L        T           F+    + M    F    K  A  A +    S H 
Sbjct: 186 AGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLADIHAPLSPHT 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT   + GA    +    G   +   + YT  A R RL
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 287


>gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont]
          Length = 303

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 86/279 (30%), Gaps = 21/279 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
            +  + +       L+  ++ +++     +I  + D       ++    +RS     +  
Sbjct: 10  AVEGFLRYLKVERQLSPLTQKNYQRQLQALIAMADDMHITAWSQLEPAQVRSLAARSRRG 69

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFK 183
               SS    ++++R    W V Q  ++ NP   +  P+      +    +    +    
Sbjct: 70  GLGASSLALRMSALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMDVDEVSQLLDID 129

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
                  + R   E +   GLR ++      +HL   +       K      V +    +
Sbjct: 130 LDDPLAVRDRAMLETMYGGGLRLAELVGIDCRHLDLESGEVWVRGKGSKERRVPIGGTAV 189

Query: 243 KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             L      + +F   +          +++A      F     K GV  +   H +R   
Sbjct: 190 TWLQHWLPLRNSFAPQDDAVFVSTRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 250 ATHLLESSGDLRAVQELLGHVNLSTTQIYTH-LDFQHLA 287


>gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 303

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIR 120
           +   +  Y +       L+ N+  ++      ++    +          D R +    +R
Sbjct: 3   IDETLDAYERELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDLRGLELADVR 62

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +     +  + S+  +   S+R   +W  R+ +  ++    ++ P+      R   +E
Sbjct: 63  AWLARSQAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQE 122

Query: 178 DMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             ++                 +   A E L  SG+R  + C   V  L  +       K 
Sbjct: 123 QARRLAEHAGRLAASGDPLALRDHAAVELLYASGIRIGELCSLDVDSLGADSTLRVIGKG 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG 281
                V       + L      +    +  ++         +++           A  AG
Sbjct: 183 DKERIVPFGVPARRALTAYLPARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAG 242

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           V   S H +R  +AT   D G+    +    G  ++   + YT  +       
Sbjct: 243 VPDISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAA 295


>gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 116/391 (29%), Gaps = 60/391 (15%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M+        V K   ++G   +       R   G+ IR  +  ++      +  +    
Sbjct: 15  MSKKANGEGSVNKY--KNG---WRATITIGRNSEGKLIRKQFYGKTKL--EVLKKVDDFK 67

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRK 113
            K     S   + TT++  I  + +         ++   +   +   I     G    + 
Sbjct: 68  VKNTLGLSTIDEKTTVQQWIKMWLEEYKMNECRPSTIDRYFGIYRNYIENTNLGVVKLKD 127

Query: 114 ITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +    +++         +    +       +    + A +++ +  NPCL V  PK K +
Sbjct: 128 LKPLTLQNYYNELIKKKNKTTDTIKIINKVLSGGMRQAQKEQLILNNPCLFVTLPKSKVK 187

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                   + Q+      E S+ R  F   L SGLR  +        +  +   +K  K+
Sbjct: 188 EEVMTFTMEEQRIFLNAIEDSRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKS 247

Query: 230 GTIITVELPDGFMK---------------------------------LLAMTPIGKETFF 256
              +     +   K                                 +L    +  + + 
Sbjct: 248 VKRVKCFDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYI 307

Query: 257 INNDKQKM------NATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMA 309
            NN           +A   +  +K+   KA +     H +R   AT   + G +   +  
Sbjct: 308 DNNLVFPNVLGGYIDARNLTKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQV 367

Query: 310 TYGWKTVDQAE-TYTKGADRIRL-GIKNSRR 338
             G  ++D     YT    + ++  +    +
Sbjct: 368 LLGHSSMDITANIYTHVLPKEKIRAVDVLDK 398


>gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
 gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4]
          Length = 322

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 30/283 (10%)

Query: 78  YRKSAH-WGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIRSGVESRKH 128
           +  S      LA ++  ++E    Q +       G        + +    +R+ + SR+ 
Sbjct: 30  WLASLSGQRRLADHTLTAYERDTRQFLGFLTGYFGGPPSIDDIKALRPSDLRAFLSSRRK 89

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------- 178
             + A    + L  +R L ++  R+  V      ++  PK+     +P +          
Sbjct: 90  EGAGARSLGRHLAGVRSLLRYLERKGLVNAAGAGAIRSPKQPKSLPKPLSAAQALTVVAA 149

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVEL 237
             Q        ++    F  L   GLR S++        +        T K      V L
Sbjct: 150 ETQLNEEPWIAARDAAVFALLYGCGLRISEALDLTPADIVATTTTLRVTGKGNKTRLVPL 209

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288
                + +              +     A              +   +  G+    + H 
Sbjct: 210 LPIVRQAVESYQSLCPYHLPATEPLFRGARGGKLQQGIIQREMQRLRSALGLPDTATPHA 269

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 270 LRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYT-GVDSARL 311


>gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C]
 gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 36/306 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSGVES 125
             L + +R+        +  +   +             + G    + ++ ++HIR+ + S
Sbjct: 82  AELFARFRRYLEMEEGRSPRTAKEYLMDAGLFARWFRERHGRPPRFEEVGSQHIRAFLAS 141

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           R+ +P  A + L S+R LF++    E +    +P   V+RPK         T  ++ +  
Sbjct: 142 REVSPHRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLL 201

Query: 184 SFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233
               +   PR+A            +GLR S++       L              K G   
Sbjct: 202 QAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKER 261

Query: 234 TVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            V L     + L               P         N  +  +A       K  A +AG
Sbjct: 262 VVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTGPNRGKPFSARAVEAMVKRVARRAG 321

Query: 282 VN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +      + H +R   A+   +AG    E+    G  ++   + Y     R RL  + +R
Sbjct: 322 LKDWRRITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVH-VSRKRL-EEAAR 379

Query: 338 RISSVV 343
            +  V+
Sbjct: 380 ALPEVL 385


>gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str.
           Toulouse]
 gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse]
          Length = 322

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 30/279 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK---HTP 130
                +A ++  ++E    Q      +  G          +    +R+ +  R+    + 
Sbjct: 34  LQTRRMATHTAQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRAYLAYRRTLNISA 93

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183
            S  + +  +R  F +  R+  V+I     V  PK      +P   +          Q +
Sbjct: 94  RSLSRGMAGLRSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKSALHVVKQENQQE 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241
           +     ++       L   G+R S++     +   +   +    T K G    V L    
Sbjct: 154 NESWIIARNAAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTGKGGKTRLVPLIKVV 213

Query: 242 MKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            + +           + N           ++        +   +  G+    + H +R  
Sbjct: 214 YETIQNYLKCCPYPLVENQPMFRGARGGPLHPAIIQRTVRNLRSSLGLPETATPHSLRHS 273

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     G     +    G  ++   + YT   D  RL
Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQIYTH-VDTDRL 311


>gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 328

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIERLKTLTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L     + +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 309

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126
            L  EY +     + +  + + +    +Q ++     G  +  ++    +R  +      
Sbjct: 18  QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 75

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
           +    S  + ++S+R  +K+ +R+ + A NP      PK++ +      +E+     +  
Sbjct: 76  QLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVN 135

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
               + G +     E L  +G R S+ C   +  L     ++    K      V      
Sbjct: 136 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 195

Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L               P      F+N     +               A +  N S H
Sbjct: 196 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 256 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 299


>gi|312126960|ref|YP_003991834.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776979|gb|ADQ06465.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 111/367 (30%), Gaps = 46/367 (12%)

Query: 15  RTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R R       F       G  R+  +           Y++ +     K +++    K   
Sbjct: 6   RKRGNSYSVVFDVGRDENGKRRQKWVSGFKTKKEAEKYLAEVISQIEKGQFV---EKNEM 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ES 125
           TL+  +S + ++    + A  +   +      I    G  + +K+   H++       E 
Sbjct: 63  TLQEYLSYWLENYAKTNTAPKTYKRYIELVKHITTYLGKIEVQKLKPLHVQQFYTTLLEE 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K + S+ ++      +  K AV+ + V  N   ++  P+ +   ++ W  E   +F   
Sbjct: 123 GKLSKSTILKIHRVFHLAIKHAVQWQLVNYNVLDAITPPRPERIEMKIWDIETANKFLEA 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233
             +     +     L++G+R  + C      +      I  + T   I            
Sbjct: 183 -IKDDILYIPVLLALHTGMREGEICALKWDDVNLEDGYIVVKATLQKINGKLILKEPKSQ 241

Query: 234 ------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                               E       LL      +      +D + ++    +  F  
Sbjct: 242 KSIRTIALMDSTIKALKEHKERQKEKKALLQENYKDENFVCAWDDGRPLDPMYVAKKFPK 301

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLG 332
              K        H +R   AT+    G     +    G  T++   +TY+    +  +  
Sbjct: 302 LIKKYNFPPIRFHDLRHTHATLLLQQGVHPKIVSERLGHSTINITLDTYSHVLPNIQKEA 361

Query: 333 IKNSRRI 339
           IK   + 
Sbjct: 362 IKKLDKF 368


>gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
 gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp.
           TrichCH4B]
          Length = 311

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  +  +          A N+R ++       +           G     +ITT  +R+ 
Sbjct: 14  RDALQIWLDGLGALEGAADNTRTAYRGDVVDFLAFMSLHFGGPQGLGALSQITTADMRAW 73

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + S ++  + A    + L++++  + W  ++E       LS   PK + +  RP  K+  
Sbjct: 74  MASSRNAGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRSPKFQKKLPRPLDKDAA 133

Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++     +            K G  
Sbjct: 134 RAMIDTVELQSQQDWVAARDVAVVTLLYGCGLRISEALGLLGKDAPLPATLRIKGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNKS 285
             V +     + ++            +            +A            + G+  +
Sbjct: 194 RIVPVLPAAQQAVSRYLKLCPHPQEASLPLFRGVRGGGLHARMIQGVVADARRQLGLPAT 253

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D   L 
Sbjct: 254 ATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLM 301


>gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
 gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM
           30120]
          Length = 309

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           +  + +       L+  +  ++      + +  G+    +         + I +      
Sbjct: 17  VEAFLRYLRVERRLSPVTITNYRRQLSVVCQILGELKVNQWQKLDITLGRSIAAKSRRTG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V+Q  +  NP  ++  PK K    +    +++ Q  +  S
Sbjct: 77  LQAASMALRLSALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMDVDEISQLLNMDS 136

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     V+HL  +        K      + L    + 
Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVKHLDLDLGEVWVMGKGSKERKIPLGKTAVS 196

Query: 244 LLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E +              ++++       F+    K  V  + + H +R   
Sbjct: 197 WLKRWLEMRELYEPVDGAVFISTQSGKRISNRNVQKRFEQWGIKQEVNSHINPHKLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294


>gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 24/277 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---P 130
           EY +      L+ ++R +++++ + +  +    G  D+ ++    +RS V         P
Sbjct: 32  EYLR--VERQLSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLVTRMHKAGLAP 89

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
            S    ++++R    W VRQ  +  NP   +  PK+     +    ++M Q  +      
Sbjct: 90  RSLATKVSALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQD 149

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R   E +  SGLR ++     +  ++ +   ++          + +    ++ L
Sbjct: 150 PLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERVLPVGRMAVEWL 209

Query: 246 AMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295
                 +           F++  KQ+++A                  +   H +R   AT
Sbjct: 210 HKWLKLRPLLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFAT 269

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              ++      +    G   +   + YT   D   L 
Sbjct: 270 HMLESSGDLRAVQELLGHADLSTTQIYTH-LDFQHLA 305


>gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           KD131]
 gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 81/288 (28%), Gaps = 28/288 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122
           +  +  +          + ++  ++ +            +    G      +    +R+ 
Sbjct: 10  RDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAW 69

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +       S  + L+++R    W   +E V     LS   PK + +  RP ++ D 
Sbjct: 70  MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADA 129

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +   S            ++       L   GLR S++                T K    
Sbjct: 130 KALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKE 189

Query: 233 I------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
                             L    +G    F       +N    +   +      G+    
Sbjct: 190 RLVPSLPVARAAVARYAALCPFDLGSGVLFRGARGGPLNPRLVARTMERARATLGLPPTA 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           + H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 250 TPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYT-AVDGARLM 296


>gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum
           SS9]
 gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 23/280 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
               EY +S     L+++++ +++     I  +   F+    T       + I S     
Sbjct: 22  QFFYEYIRSE--RELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 79

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS    L+++R  F + V+++ +  NP   V  P++     +    ++M Q  S  
Sbjct: 80  GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 139

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
            +     + R   E +  +GLR ++     V+ +  +   I+          V       
Sbjct: 140 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 199

Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           + +A             +   F++    +++             K  V  + + H +R  
Sbjct: 200 EWVANWLKVRGALASGDEVGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 259

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   ++      +    G   +   + YT   D   L 
Sbjct: 260 FATHMLESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 298


>gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175]
 gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175]
          Length = 376

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%)

Query: 21  IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F+    R++  +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                     ++   S   +   I    GD     +T +HI    +    +   A + L 
Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161

Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + V+ + A   EY              +    +        K       S         
Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +    L+ +G RC++ C       +   + +   KTG             L     + + 
Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
            F+  +  Q         +++       + +   H +R   A+I+         +    G
Sbjct: 282 LFWHQSPSQPFTPVCLDRFWRPFRQTIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    YT  A   R   + +  +S ++  +
Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373


>gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 318

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 94/293 (32%), Gaps = 25/293 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           +  +          ++++ ++     Q +R   D    ++   H+ S +   +      S
Sbjct: 24  LEAFLIWMKDAGYTIHTQKNYTGDVKQFLRTLRDKPLDQVKKIHVMSYLSKAREGGAGDS 83

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  +   ++   F+     E  + NP   +++ K +   +  +  E   Q      EG  
Sbjct: 84  TRNRKHAAVNSFFRALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLLAVEGKY 143

Query: 190 -SQPRLAFEFLLYSGLRCS---------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++    F  ++Y GLR            S       +       +T      +   +  
Sbjct: 144 ANRNMAIFLLMVYMGLRVGEIHSLNVSDYSRERRTLDVFGKGRKWRTLPVPAAVCDFVEH 203

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRK 291
              + L      ++  FI+   +++            F+      G+ +    S+H +R 
Sbjct: 204 ALEERLTPWRGKEDAMFISQKGRRLAVRSIQQIATETFERFQQDKGLERREAYSSHKLRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             AT+    GA    +    G  ++     YT   DR +   K   ++   + 
Sbjct: 264 TFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREK--EKAMDKLDIQIP 314


>gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
 gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B]
          Length = 402

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 110/351 (31%), Gaps = 28/351 (7%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYI 61
            +     R G+  + FR       + I+L          A   A             + I
Sbjct: 43  GLKIIINRQGRRRFLFRYTYNRVKKSIQLGEYPALDIATARQIANDHKREIALGNDPKAI 102

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              +    T +      Y   A    L   +  S           K G      I  + I
Sbjct: 103 RDEKCNVLTFQEFSELHYLPYAMMNKL---TAKSDAGSLKLHFYPKWGKKPLTDIGQQDI 159

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  ++       P++  +  + +  +F+ A+   YV  NP   + + K      R  ++ 
Sbjct: 160 QKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPGQYIRKLKENNVRQRFLSRA 219

Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTG 230
           ++  F    +E        A +F L +G+R  +   +  + L      N    +   K+G
Sbjct: 220 EVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITGSKWECLTVDDDGNWSLFLPHTKSG 279

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGV--NKS 285
              TV L +   +++      ++                +     F      AG+  N  
Sbjct: 280 LSRTVLLNNLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAHPKKAFARIKKAAGITDNFR 339

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            H +R   A+I  ++G AT +++    G ++   +  Y   A      +  
Sbjct: 340 IHDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREVSA 390


>gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
 gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC
           23134]
          Length = 296

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 28/278 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127
           I  + K       + N+  S+     Q      +              IRS V      K
Sbjct: 2   IKSFLKHILAKRYSQNTITSYNHDLQQFSTYLQEIHRLEEPEHADHNMIRSWVLQLTEEK 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
              +S  + + +++  +K+   Q ++  NP   ++  K   +      +E M Q      
Sbjct: 62  ANVTSINRKIATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTVQ 121

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVEL 237
                EG + +   E L  +G+R S+     +QH+      I+  +           + +
Sbjct: 122 YPAGIEGLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNISV 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA--GVNKSA 286
               + LL      K+  +                          K           KS 
Sbjct: 182 AKPLLDLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKSP 241

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT   + GA  HE+    G  T+   + Y+ 
Sbjct: 242 HVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSH 279


>gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum
           STM815]
 gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 92/294 (31%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y  S      L+ ++  ++     ++   +       +T   IR  V    
Sbjct: 1   MTSADPIATYLSSLEHERRLSAHTLRAYTHELGELKTLANGRPLESLTATDIRGAVARAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               SA      L++ R  ++W   +  +  NP  +V  PKR     +  + +D  +   
Sbjct: 61  AGGLSARSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALSVDDTHKLME 120

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
              +  +EG +     E    SGLR S+      Q+   + +  +              K
Sbjct: 121 TPATATAEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                 V +    ++ L                  F++    +M+        K  A  A
Sbjct: 181 GNRRRVVPVGSKALEALRAWLAVRGELVKHDPHPLFVSVRGNRMSPNVVRDRVKRAALTA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYT-GLDFQHLA 293


>gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 328

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                       + P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITIFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L       +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 373

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 27/347 (7%)

Query: 10  FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + +   G+  +Y++    G RI    P  + F       +          + P    
Sbjct: 18  HRVRRKLASGETAVYHYAWRGGPRIDAA-PGSAEF-------VAAYNAAHAARDRPVHHD 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R      + 
Sbjct: 70  GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 129

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA    + +  +  WA  +  + +NPC    R    +     WT+  +  F 
Sbjct: 130 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +        RL F   +++G R +D  +            ++  KTG  + + +     +
Sbjct: 190 AVAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLRE 247

Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +      +   T    +  Q   +  F   F      AG+   + H +R  + T  A A
Sbjct: 248 AMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALA 307

Query: 301 GATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342
           G +  E+ A  G  ++  AE      Y  G DR RLG     ++   
Sbjct: 308 GCSVPEIAALTGH-SLKDAEGILSKHYL-GRDR-RLGESAVAKLEKH 351


>gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
 gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580]
          Length = 304

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 84/286 (29%), Gaps = 33/286 (11%)

Query: 72  KWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
           + +  +Y   SA     +  +  ++ +          +    + +++   +R  V    +
Sbjct: 2   EQVFEDYLAYSAGVRHFSEKTIEAYRNDLKLFSAWLAENELPFTEVSKVQVRIFVADLGN 61

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S  + L+ +R L+++A+++     NP   +   K+  +  R    ++ ++F  F
Sbjct: 62  RHFAPASVNRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCEF 121

Query: 186 WSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
             E      A +  L+     +G R ++     +  L+      I   K      V   D
Sbjct: 122 PKEAGILWYARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFAD 181

Query: 240 GFMKLLAMTPIGKETFFIN-------------------NDKQKMNATQFSIWFKAKATKA 280
              + +      +                              +                
Sbjct: 182 FAQEAVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALL 241

Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 + H  R   A++    GA    +    G   +   + YT 
Sbjct: 242 PNYKKLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTH 287


>gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c]
 gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 17/280 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----------GDFDYRKITT 116
             ++    I  Y       + +  +  S+                     G  D R++ T
Sbjct: 2   DKSSFVEWIDRYHSYMQMRNYSEKTIQSYIRVVRLFGAYLIDRGATFDQVGGADDRRLIT 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            ++ +  +   ++  +  + ++++   +++   Q  VA+NP   ++RPK K + +R   K
Sbjct: 62  GYLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYL-K 120

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                         + +L    +  +G+R S+ C   ++H+  +  +I+ +  G  I   
Sbjct: 121 HRQVLKLIESMPSVRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTV 180

Query: 237 LPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
             D     L            FF+      ++       F+     A    + H +R   
Sbjct: 181 FIDEETCRLMEIYAGDRIFGPFFVGQQGHPLSPRTVQHLFEVY---APPGVTPHTIRHSY 237

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A+           +    G  ++   E Y       R G+
Sbjct: 238 ASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGV 277


>gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
 gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 93/275 (33%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD-FDYRKITTKHIRSGVESRKHT 129
           I E+     +  + +  +  S+        R     GD   +  + +  IR  +E     
Sbjct: 2   IEEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQITWESVDSDIIRGWMEDMMDR 61

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +SA    + L+++R L+++++ +  V +NP L +ERPK      +   + +M +     
Sbjct: 62  GNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDAS 121

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
           +  +       R        +G+R ++        +   N       K      V   D 
Sbjct: 122 TWDTSYQDALARTIIITFYETGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQRLVPFGDE 181

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFK--AKATKAGV-------NKSAHGVR 290
             ++L      +    +   K    +     +         K  +        ++ H +R
Sbjct: 182 LYQVLQEYLNQRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   + GA    +    G ++++  E YT  
Sbjct: 242 HTFATTMLNNGAGLENVQKLLGHESLETTEIYTHT 276


>gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
 gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084]
          Length = 321

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 96/306 (31%), Gaps = 45/306 (14%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--- 128
            EY          + N+  ++     + +      G  D   ++   I + +E+      
Sbjct: 8   DEYLNYLAIERGSSPNTLEAYGRDLGRYVAHLRGRGADDPDAVSRHDIEAYLETLAEGGL 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +PSS  + + +++   ++ V ++    +P   +  P++        + E + +      +
Sbjct: 68  SPSSVQRSVAAIKGFHRFMVSEQITENHPTADLPLPRKALHLPDTLSHEQVFRLLDEPFQ 127

Query: 189 GS----------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            +                      + +   E L   GLR S+ C   ++ +  +   ++ 
Sbjct: 128 DACRPAPRALADGGTDDSGAARFYRDKAILEVLYGCGLRVSELCSLELRDVLLDDEVLRI 187

Query: 227 -QKTGTIITVE-----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             K      V              + +  LL   P      F+ +   K++        +
Sbjct: 188 LGKGSKERVVPILGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGTKISRQAVFGIVE 247

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331
                 G+     H +R   AT   + G     +    G  ++   + YT   DR  +R+
Sbjct: 248 RYGRLTGIEGLHPHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTH-VDRTHVRM 306

Query: 332 GIKNSR 337
               + 
Sbjct: 307 AYLAAH 312


>gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           TXDOH]
          Length = 323

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 25/279 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH-TPSSA 133
           + +      L+ N+  ++        +         +       +   + +R     +S+
Sbjct: 43  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTEKPMLEGYIAARSDGKATSS 98

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 99  NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 158

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 159 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 218

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 219 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 278

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             + GA    +    G   +   + YT  A      +  
Sbjct: 279 LLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHA 317


>gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 33/293 (11%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH---TPSSAIQ 135
               ++ ++ ++     Q                 I  KHI+    S  +   T +S  +
Sbjct: 17  HKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYYKKLTRTSIAR 76

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------- 187
            L ++R LF++ ++  ++  NP + V  PK+  +       + +       +        
Sbjct: 77  KLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKGANNILKTSHT 136

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   +     E L  SGLR S++    V  ++     ++            L D  
Sbjct: 137 GLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNKERLAPLSDTS 196

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           +  L      +           F+    ++++  Q     +    +AG+  +   H +R 
Sbjct: 197 IVALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGLPLTTAPHTLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
             AT   + GA    +    G   +   + YT    D++      +   S  +
Sbjct: 257 SFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHPFSGTL 309


>gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 293

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 24/275 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---K 127
            +  +     +    + ++ +S+++  +Q        + D    T + +R+ V S    +
Sbjct: 2   FLERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEADILSATHRDVRNWVVSLMDDQ 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +  +  + +++++ L+ + +R+E + +NP   V  PK           E +     +  
Sbjct: 62  KSSRTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALLDYEG 121

Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL--- 237
                 EG + +L  EFL  +G+R S+      + +   N       K      + +   
Sbjct: 122 IFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKERIIPMSES 181

Query: 238 -PDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289
                   L     G      +     N   +          K       +   KS H +
Sbjct: 182 LICSIRDYLLKKKSGVIYNNSDALIVTNKGLQAYPEFIYRTVKRYLSIISSKEKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +AGA  + +    G  ++   + YT 
Sbjct: 242 RHTFATALLNAGADINAIKELLGHASLAATQVYTH 276


>gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
 gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 91/294 (30%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVE 124
            T    I+ Y  +      L+ ++   +    D++   +     + +T   IR   +   
Sbjct: 1   MTETDFIAAYLSNLEHERRLSAHTLRGYTHELDELRLLAKGRPLQSLTAVDIRGAVARAH 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   T  S    L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDANRLME 120

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                  EG +     E    SGLR ++     V+    + +                 K
Sbjct: 121 TPPAASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    ++ L      ++     +           +++        K  A  A
Sbjct: 181 GNRRRIVPVGSKALEALNAWLAVRDQMVRLDPHPLFLSARGNRLSPNVVRERVKRAALVA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa]
          Length = 302

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       ++ ++   +     +I+    K+G  D+  + T+ +R+ V       
Sbjct: 5   LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R L+++ +R+     +P   +  PK   +  R    +   Q      
Sbjct: 65  QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     ++ L      ++ +     +  + +     
Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184

Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L      +          FI    +++      +  +     + G +   H +R   A
Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281


>gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 322

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 91/299 (30%), Gaps = 42/299 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------------SGDFDYRK 113
           ++  + +   +    + ++  ++++   Q                               
Sbjct: 14  VLERFIQYLRYEKRFSSHTITAYQTDLYQFFTYTANSADHNLSPAEAELKVKLALSHIAD 73

Query: 114 ITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           IT + IR  +           S  + ++ +R  FK+A+R+  +  NP   ++ PK     
Sbjct: 74  ITYQDIREWIVQLMNDDQAAKSINRKISCLRTFFKFALREGIITANPASKIQAPKIPKRL 133

Query: 171 I------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FS 223
                  +  +     Q       G + +L  E L  +G+R ++        +       
Sbjct: 134 PVVVEEDKIVSLLSSSQIFDDSFTGLRDKLVIELLFGTGIRLAELVGLKETDIDIYEGTI 193

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFK 274
               K      + +      LL      K++   NN+              +    +  +
Sbjct: 194 KVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKGANAYSKMVYLIVQ 253

Query: 275 AKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
              +       KS H +R   AT   + GA  + +    G   +   + YT    +R++
Sbjct: 254 KYLSLISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLK 312


>gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 309

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR---SG 122
           +     + +      + +  +R ++   F   +    D        R + T  +R   + 
Sbjct: 2   EAAFDGFLRYLRHERNASELTRKAYAEDFASFLDYCEDRHGYFPEPRDVDTTFLRGYLAY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +    +  ++  + L  +R LF++ +R++    NP  ++  P+   +     T  ++ Q 
Sbjct: 62  LHDCGYQRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEVSQL 121

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                     G + R   E L  +GLR ++     ++    +   +    K        +
Sbjct: 122 LEAPPANHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERIAPV 181

Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                + L+                ++  F+N    ++         +     +G+    
Sbjct: 182 GSYAERALSRWLEIREVGPRANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGLSNKT 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S H +R   AT   D GA    +    G K++   + YT  +
Sbjct: 242 SPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVS 283


>gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
 gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120]
          Length = 300

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV 123
           +   L+    +Y  S    + +VN+  ++E+      + + +     Y+++T   +R  +
Sbjct: 3   QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIMAYQQVTFLDVRIYL 60

Query: 124 ESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              K    + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
                  E       + R+  E L  +G+R S+     +  L  +  +I    K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGNKERY 180

Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282
           V         +      +                N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071]
 gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208]
          Length = 300

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 89/284 (31%), Gaps = 27/284 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +   L+    +Y  S    + +VN+  ++E+      R   +           +  +   
Sbjct: 3   QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIIT 234
                  E       + R+  E L  +G+R S+           +    +   K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180

Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282
           V         +      +                N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 284


>gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 375

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 100/358 (27%), Gaps = 34/358 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKR--EYINSP 64
           FV K + + G I Y  R      G++       +       ++ L               
Sbjct: 5   FVHKRKGKTG-IGYAVRYADPLTGKKRTFGTFRKFREAQQKVNELRMLLDSGGTPLQKKE 63

Query: 65  RKKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           R  P T   +       + +      L+  +   +  +   +++  GD    +IT + I 
Sbjct: 64  RFTPLTFGEVAESLLAVWDERLKIRELSQKTHNDYVYWLRILMKVFGDKLLCQITKEDIE 123

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                +    +   A + L  +R +F   ++   VA NP  +V     +      +    
Sbjct: 124 EYRNQKAQEFSNVCANKHLLRIRNVFAHGIKILAVANNPAKAVPLLSERAHIRDTFVLPA 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA----GVQHLQNNIF------SIKTQK 228
             +     S+  + +     ++  G     S +         ++ +          +T+ 
Sbjct: 184 ELERILAASQKLRSKYYLPAVILLGAEHGASRQEILSLKWSKIKFDFQDIGLVEFFRTKT 243

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------TQFSIWFKAKA 277
                   +P     LL                                 +F   +K   
Sbjct: 244 GRKRTEYLMPRTKKALLEWQSHLDFMRHRKRITDIKTDLVFCHLDGSPFRRFDTAWKKAL 303

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             AG+     H +R    +    +G    +     G K +   + Y+   +   L ++
Sbjct: 304 DLAGIKGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNGRMLALQ 361


>gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
 gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y         L+ ++   +     ++   +       +T   IR  V    
Sbjct: 1   MTAADPIAAYLSHLEHERRLSEHTLRGYTHELAELKLLAKGRPLESLTAVDIRGAVARAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W      +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMD 120

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                  EG +     E    SGLR ++     V+    + +                 K
Sbjct: 121 SPPADSPEGLRDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    +  L      +E    ++           +++        K  A  A
Sbjct: 181 GNRRRVVPVGSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKRAALAA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT G D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293


>gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11]
 gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11]
          Length = 332

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 98/309 (31%), Gaps = 42/309 (13%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG---VESR 126
             IS +  +       A N+ +++      +              +   I S     ++ 
Sbjct: 9   QWISTFLDAQAADLGAAHNTLLAYGRDLKDVAAWLAARQIGFETASRDQIESYLIACDAE 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + L++++ ++++A  + +   NP + ++ P R+    +     ++ +     
Sbjct: 69  GLSRATRARRLSAIKQIYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAA 128

Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
            +  +            E L  +G+R S+     V   + +   +    K G    V L 
Sbjct: 129 RQSGRNLPDRIRNTCLMELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLS 188

Query: 239 DGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 LA     +                  F        +   +F +  K  A  AG+
Sbjct: 189 PPARDALAAWLAHRDKAEEAAVAKGAPPSRYLFPSRGKSGHLTRHRFYLLIKEFAVTAGI 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    S H +R   AT     GA    + A  G   +   E YT   D          R+
Sbjct: 249 SPEAVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD---------ARL 299

Query: 340 SSVVDSDDP 348
           S +V    P
Sbjct: 300 SELVLEHHP 308


>gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 275

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 97/257 (37%), Gaps = 13/257 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
            +I  +         +  +  ++  +  Q I    +    +IT   +   V     T   
Sbjct: 14  EIIVLWLA-----GKSKTTVKTYVCHVKQFIDFM-NQPLAEITLDDLVLWVNRLNLTYTP 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+ A + L  ++ LF + V+  Y++ N    ++ PK + +       +   +     +  
Sbjct: 68  PTVANKIL-CIKSLFSFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQATP 126

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + R+    +  +GLR S++       L+ N  +    K   +  + +PD  ++ L   P
Sbjct: 127 GRDRVLLCLIYTTGLRVSEAVNLTWSDLKGNKLA-VYGKGSKLRFIIVPDWLLEQLQTLP 185

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHEL 307
              E  F  +  + ++        K  A KAG++   SAH +R   A+ + + G     L
Sbjct: 186 KISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGCNVRLL 245

Query: 308 MATYGWKTVDQAETYTK 324
             + G   ++  E Y  
Sbjct: 246 QESLGHSKLETTEKYLH 262


>gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196]
 gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 318

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
             L S Y         L+  +  S+    D ++  S       +   HIR  +       
Sbjct: 25  AELASAYLAYLSVTRRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHIRRFLAQLHANG 84

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L++ R L+ +  R    A NPC  V  PK      R  + ++  +   F +
Sbjct: 85  FSGRSLARMLSAWRGLYNYLARHHGYACNPCAGVRAPKSPRSLPRTLSPDEALKLLEFDT 144

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQKTGTIITV 235
                 + +  FE    SGLR ++      +          +       +    G+    
Sbjct: 145 PDLVALRDKAMFELCYSSGLRLAELANLKPEDLSLAEGIVRVTGKGNKTRDVPVGSKAMQ 204

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
            + +   +   +   G+   F++   + ++        K +A K G++     H +R   
Sbjct: 205 VVREWIKQRATLAKPGETGLFLSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSF 264

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +      +    G  ++   + YT 
Sbjct: 265 ASHVLQSSGNLRAVQEMLGHASISTTQVYTH 295


>gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC
           23344]
 gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1]
 gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           K96243]
 gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344]
 gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 25  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 80

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 81  NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 140

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 141 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 200

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 201 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 260

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 261 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 294


>gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium
           ALC-1]
          Length = 376

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 9/256 (3%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           Y         A N+  S+   F+  I      +  +I    +R+ +        S     
Sbjct: 110 YLDKLQLKKYANNTVKSYILAFETFINYHKAKELIQINENDVRNYILKLIQENKSDSYIN 169

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  + K+         N    +ERP++  +  +  +KED+ +  +  +   + +    
Sbjct: 170 IAINSI-KFYYESVLGMPNRFYQIERPRKAKKLPKVLSKEDVLKVITNTN-NLKHKCIVS 227

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF 255
            L  SG+R ++     +  + +    I+    K        L    +K L       +  
Sbjct: 228 LLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHALLKDLRDYYKQWKPE 287

Query: 256 FINN---DKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMAT 310
                    ++ +A       K  A KA   +  + H +R   AT   + G    ++   
Sbjct: 288 KYIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRHSFATHLLEDGVDIRQIQVL 347

Query: 311 YGWKTVDQAETYTKGA 326
            G  +    E YT  A
Sbjct: 348 LGHSSTKTTEIYTHVA 363


>gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
 gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216]
          Length = 379

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 113/370 (30%), Gaps = 39/370 (10%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           ++ P  + +++  +G +  Y      G      L          A   A   +      I
Sbjct: 4   IKEPIRIRRKKLTNGNVSLYLDIYLNGKREYEFLKLYLIPEKTKADREANRQTLQLANSI 63

Query: 62  NSPR-----------KKPTTLKWLISEYRKSAHWGSL-AVNS--RISFESYFDQIIRK-- 105
            + R           K       L  +Y ++     L A ++    +++S    + +   
Sbjct: 64  KARRIVEVQNGEHGFKSAYASDTLFFDYYRAMCARRLGAESTGNWGNWKSCLKHLQKYEP 123

Query: 106 SGDFDYRKITTKHIR---------------SGVESRKHTPSSAIQFLTS---MRVLFKWA 147
           +    + +IT + ++                  +  K  P S    ++    +R     A
Sbjct: 124 NERIRFSQITQEWVQGFRDYLEKDACAWSCDERDRIKDHPLSRNSRVSYFNKLRACLNQA 183

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
                + INP   VE  K +       T E++Q+      E    + AF F   +GLR S
Sbjct: 184 YEDRIIPINPMRGVEGFKAEEGTRMYLTIEEVQRLAQTECEYPAIKRAFLFSCLTGLRRS 243

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           D  R     +       +        + +         A     +     +      + +
Sbjct: 244 DVIRLTWGDVHQQGEFTRIIFKQKKTSGQEYLDIPPQAAELMGERGKDAEHIFPNIHSPS 303

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +   K    +AG++K  + H  R   A +  D G   + +    G + +   + Y K 
Sbjct: 304 CTNETIKRWVLRAGIHKDITFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKV 363

Query: 326 ADRIRLGIKN 335
            D+ +     
Sbjct: 364 LDKNKQAAVA 373


>gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 97/293 (33%), Gaps = 34/293 (11%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126
             IS +  +       A N+ +++      +          + ++    I +     ++ 
Sbjct: 9   QWISTFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKGTSFAQMRQSDIEAYLISCDAE 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + L++++ ++++A  + +   NP L ++ P R+    +   + ++ +     
Sbjct: 69  GLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENEVDRLLGAA 128

Query: 187 S-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                   +  +     E L  +G+R S+     V   + +   +    K G    V L 
Sbjct: 129 RTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGKERMVPLS 188

Query: 239 DGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 L+     +                  F   + +  +   +F +  K  A   GV
Sbjct: 189 PPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGV 248

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                + H +R   AT     GA    + A  G   +   E YT   D  RL 
Sbjct: 249 SPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300


>gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
 gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2]
          Length = 317

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 19/259 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
              +  +  S+      +   S      ++   HIR  +     +     S  + L++ R
Sbjct: 38  RRYSKLTAESYARDLAHLFELSTGLALNELKVSHIRRYIAQLHSSGLGGRSLARLLSAWR 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             + + +R      NPC+ +  PK      +  + +   +     ++     + +  FE 
Sbjct: 98  GFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVDLPTDAPDSIRDKAMFEL 157

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMT------- 248
              SGLR  +      + ++++I       T K      V L    +  L          
Sbjct: 158 FYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLGGCAISALHEWLAVRPTL 217

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305
             IG+   F+     +++     +  K    K G+      H +R   AT    +     
Sbjct: 218 ANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHMLRHSFATHVLQSSGDLR 277

Query: 306 ELMATYGWKTVDQAETYTK 324
            +    G  ++   + YT 
Sbjct: 278 AVQEMLGHASISTTQVYTH 296


>gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
 gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 94/284 (33%), Gaps = 23/284 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            + +  + EY+        +A N+  S+     ++ ++      ++ T   +   V +  
Sbjct: 1   MSWEESLLEYQTYLKLEKHMANNTIESYMRDIKKL-QQFSPLLPQEHTYDSLVEFVHAMA 59

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
             ++  S  + L+ ++  F +   +E    NP   +E PK  T+     T++++ +    
Sbjct: 60  KEYSQRSQARILSGLKSYFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEKEIDRLVDV 119

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                 EG + R   E L   GLR ++     +  L      I+   K      V +   
Sbjct: 120 IDLSKPEGERNRAIIEMLYGCGLRVTELVNLRISDLFFEEGYIRVLGKGNKERLVPISPY 179

Query: 241 FMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNK--SAH 287
            +K + +                           +         K  +  AG+ K  S H
Sbjct: 180 TIKYIDLYRNEIRKHQPIQPGYEDILFLNRRGRNITRVMIFTIIKELSIIAGIQKNISPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             R   AT     GA    +    G + +   E YT   D+  L
Sbjct: 240 TFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTH-IDQEHL 282


>gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum
           HRM2]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 95/333 (28%), Gaps = 33/333 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + +  +GK             +    +         +     + + +  N  R      
Sbjct: 35  VRIKLSNGKW------------KSKQVNTLELAKKVEAKFKTQSIEEDVFNIHRAPVI-- 80

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + S+Y   A     +         +   I          KIT  H++  +        
Sbjct: 81  DGVWSKYLTWASLNKRS--WIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATKDT 138

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  P++  Q L  ++ +F W+++Q   +       +       +       +    
Sbjct: 139 PKGGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGLRS 198

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITV 235
                      +  L  +F LYSG R  +        +      +  Q          ++
Sbjct: 199 LMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSL 258

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            L +  M +L      K + ++           F   +K    +AG++   H +R   A+
Sbjct: 259 PLNNHCMTILERCRKLKVSDYVFPSTLGNYYNTFDETWKRIRKRAGISIRFHDLRHTYAS 318

Query: 296 ISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             A +G    + L    G  T++  + Y    +
Sbjct: 319 YLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351


>gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
 gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC
           25845]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
           + ++     +  + +  + I++     +  R   +      +  I +  +R+ +E     
Sbjct: 4   VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
            +SA    + L+++R  +++A+R++ +  +P   ++ PKR+    +   + +M++     
Sbjct: 64  GNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDSK 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
             +   +    R        +G+R S+      + + N       T K      V     
Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGKE 183

Query: 241 FMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
              + A     +          FF     ++M   Q     K   +K      +S H +R
Sbjct: 184 LADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278


>gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 322

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 90/310 (29%), Gaps = 34/310 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---- 109
               E +  P    + +   I+ +         L+  +  ++     Q +   G      
Sbjct: 3   AKLAEPLPDPACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGEL 62

Query: 110 ----DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                +  +    IR+ + +R+       S ++ L  +R   ++  R+    +    ++ 
Sbjct: 63  VTLERFAALEPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 122

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAG 213
            PK      +P      ++F        + R  + +            SGLR S++    
Sbjct: 123 APKVGKSLPKPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 182

Query: 214 VQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------K 263
            + +         + T K      V +    + L+             +           
Sbjct: 183 RRDVPLPGAGDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDGPIFVGARGGP 242

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + A    +         G+    + H +R   AT     G     +    G  ++   + 
Sbjct: 243 LRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQI 302

Query: 322 YTKGADRIRL 331
           YT G D  RL
Sbjct: 303 YT-GIDSERL 311


>gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160]
 gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160]
          Length = 397

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 34/344 (9%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T+     G   Y   +R   GR+    +                S    +   +P +  
Sbjct: 5   ITRITLSDGSARYRARYRDPGGRQHERRFV--RKVDAQRWLDEATSALVTQTWTAPARGR 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+      +  S     +  ++   + +     ++   G      +T   +   V    
Sbjct: 63  VTVADWADRWLASQ--TGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLL 120

Query: 128 HTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              S+A     + RV       AVR   +  NP   V  P+      R  T +++++   
Sbjct: 121 GQGSAAGTVRQAHRVFSLLLGLAVRDGRIPRNPAERVPLPRVIRSEPRFLTHDEVERLAD 180

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKT 229
                         L Y+GLR  +     V+ +      +                  KT
Sbjct: 181 AAGAEGD---VIRLLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRLEFGTPKT 237

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NK 284
               TV LP    + LA    GK+   +          +   W    F      AG+ + 
Sbjct: 238 HQQRTVPLPATLAEPLARRCEGKQGDDLLVTTASGTVLRLRNWRRVVFDPAVRAAGLSDV 297

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           + H +R  +A+++  +GAT   +    G  +     + Y+   D
Sbjct: 298 TPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMTLDVYSGLVD 341


>gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC
           39073]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 79/286 (27%), Gaps = 28/286 (9%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS-- 121
           T    +  +          +  +  ++ +  +Q                 +    +R   
Sbjct: 5   TFGEALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYL 64

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +       SS  + L ++R  +++ +R   V  +P   +  P+R+       +  +M+
Sbjct: 65  GWLNQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEME 124

Query: 181 QFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           +  S       G + R   E L  SG+R ++        L       +   K      V 
Sbjct: 125 KLLSIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVP 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGVN 283
           L    +K L                                              KA + 
Sbjct: 185 LGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALR 244

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +  S H +R   AT   + GA    +    G   +   + YT  + 
Sbjct: 245 RGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQ 290


>gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383]
 gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++   +    D++ + +       +T   +R   +   S   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRGYTHELDELKKLANGRPLEALTAADMRGAVARAHSGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNAPLANT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
           +EG +     E    SGLR ++     V + Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALTAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292


>gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168]
          Length = 311

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 92/276 (33%), Gaps = 26/276 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHT 129
           Y +       AV +  ++       +         +        +T + +   +  RK  
Sbjct: 20  YAELVSVERKAVMTAETYSGAVSLFLDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTV 79

Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +  + ++++R    + V +   + N    +ERPK +    R  + E ++ F +  
Sbjct: 80  GADELTIAKDISALRSFGNFLVARHVWSENCACLLERPKARRALPRVLSPEQVETFLNAI 139

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                 G + R  FE +   GLR S++    +Q+L      +    K      V   D  
Sbjct: 140 DVSEPLGVRDRALFELIYSCGLRISEASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAA 199

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
           ++ L+                   F+N     ++       F+    ++GV+   H +R 
Sbjct: 200 LRWLSSWLSEYRPQLVGSRQIPYVFVNYKGMPLSRKGIWKRFQEIEVRSGVSAKVHTLRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT     GA    +    G   +   + YT   D
Sbjct: 260 SFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDD 295


>gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 30/303 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YR 112
           R     L      +  S      +  +  ++      + R +                  
Sbjct: 4   RTADLDLAGATEAFCASLSAEGRSPATIAAYRRDLALLARVAEKLAAGIICREITPGLLD 63

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           ++ +    +  E    + +S  +   ++R  F WA+    V  NP  S+   +   +   
Sbjct: 64  QVFSSEAVADSERGPRSAASLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPV 123

Query: 173 PWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             T  + ++              + R   E LL +G+R  +     +  +  +   ++  
Sbjct: 124 FLTVGEKKRLLKELKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVW 183

Query: 228 ---------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                       T +   L     +         E  F++N   ++   Q +        
Sbjct: 184 AKGNVPQVKFIKTDLRTLLRRYLAERRRRGRPEMEALFLSNRDSRLCQRQIANRLAHWLR 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           KAG+ K  + HG+R   AT    A      +    G + V   + YT   D      +  
Sbjct: 244 KAGIEKELTPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEAL 301

Query: 337 RRI 339
            R+
Sbjct: 302 ERL 304


>gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 88/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRK 127
           +  Y +       L+  + ++++   + II  + +   +      +            + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R  F W V Q  +  NP   V  PK      +    +DM +      
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+     ++HL   +       K      + +    + 
Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRKPVA 187

Query: 244 LLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      ++ F   +D        ++ +A      F     K G+  +   H +    A
Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRXSARNVQKRFAEWGIKQGLNNHVHPHKLXHSFA 247

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 284


>gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC]
 gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC]
          Length = 299

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK- 127
            I  +  +      L+ N+  ++                          H+     +R  
Sbjct: 8   AIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHA 67

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +SA + LT +R  F WA+R+  +A +P + +   ++     +  T+  ++      
Sbjct: 68  QTRATSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAP 127

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                 G + R   E +  SGLR S+        L      ++    G     V   +  
Sbjct: 128 DTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLTEGVLRITGKGGKERLVPFGEEA 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + L                 +  F+      M+   F +  K  A  AG+    S H +
Sbjct: 188 RRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RERL 288


>gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 292

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 86/276 (31%), Gaps = 17/276 (6%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKH 128
           L+  I ++ +        +  +   + S    +  +  +F    + + +   +   +   
Sbjct: 5   LEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAFTLNSLREWLAHAVAEGK 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183
           + S+  +   ++R    WA R+ Y+  +    +  PK         +             
Sbjct: 65  SRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPTAAGELMGNAVS 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           +      +     EFL  +G+R ++     V  +  +  + +          V   D   
Sbjct: 125 TDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGNKQRVVPFGDAAH 184

Query: 243 KLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
             L                  F+     +++A Q     +  A   G    + HG+R  +
Sbjct: 185 DALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGAPGLTPHGLRHSA 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA    +    G  ++   + YT  + + 
Sbjct: 245 ATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR 280


>gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42]
 gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 311

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            + ++ A    L+ ++  ++E    Q +    G         D R++    +R+ + +R+
Sbjct: 18  AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADLRAFLAARR 77

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182
              S A    + L  +R L +   ++  V      ++  PK+     +P +         
Sbjct: 78  RQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITIVS 137

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
                       ++       L   GLR S++       L     +++    G       
Sbjct: 138 DEAQLHDEPWIAARDAAVMTLLYGCGLRISEALNLVPADLPKGATTLRITGKGNKTRLVP 197

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
              +  +  + +  L        E  F      K+ A       +      G+    + H
Sbjct: 198 LLPVVFDAVEKYRALCPYDLESGEPLFRGARGGKLQAAIIQRAMQKLRGALGLPETATPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1]
 gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1]
          Length = 333

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 72/272 (26%), Gaps = 28/272 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           K ++ E+  +      + ++  ++ S     +   G+   R IT + I      R     
Sbjct: 20  KDILEEFIFTLEAAGASEDTIKAYRSAIKDFLEFLGEKPLRDITLRDIILWRNYRLKHGF 79

Query: 131 ------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       ++   +   +   F+W      +        +      E +       
Sbjct: 80  SKAKTKDKKKWQTTLHYYSMFLNRFFEWLGLNFRIPRIRKPPRKIHVLNDEEVHKL---- 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236
                         +L    LL +GLR  +     V  +     +I     K      V 
Sbjct: 136 -----LESIRDPLDKLILSILLDTGLRSKELLGIRVSDIDFENRTITITSTKYDKERKVL 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
           +    M+L+            +     +  +      K    +A +       H +R   
Sbjct: 191 VTSRTMELIRSWIKLNNLEKEDRLI-PLTYSGLYKRIKRLGRRASIPAWKIRPHILRHTF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT +   G +   L    G   +   + Y   
Sbjct: 250 ATQALRKGLSLPYLQRLLGHSDIKTTQIYLHV 281


>gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           2.4.1]
 gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 80/288 (27%), Gaps = 28/288 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122
           +  +  +          + ++  ++ +            +    G      +    +R+ 
Sbjct: 10  RDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAW 69

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +       S  + L+++R    W   +E V     LS   PK + +  RP ++ D 
Sbjct: 70  MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADA 129

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +   S            ++       L   GLR S++                T K    
Sbjct: 130 KALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKE 189

Query: 233 I------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
                             L    +     F       +N    +   +      G+    
Sbjct: 190 RLVPSLPVARAAVARYAALCPFDLASGVLFRGARGGPLNPRLVARTMERARATLGLPPTA 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           + H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 250 TPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYT-AVDGARLM 296


>gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei
           DM98]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSA 133
           + +      L+ N+  ++        +         +                    +S+
Sbjct: 19  WLEH----GLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSS 74

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 75  NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 134

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 135 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 194

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 195 LRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATH 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 255 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 288


>gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC
 gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 322

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 34/300 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG------DFD-YRKITTKHIRSG 122
           L+   + +          + N+  ++     Q +          D      +  + +R+ 
Sbjct: 16  LREAAAAWLAVLKTERRFSENTVEAYGRDLRQFLAHLARSGAAPDIPALVALKPRDLRAF 75

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + +R+    +  S ++ L ++R   +   R+ +  ++   +V  PK +    RP      
Sbjct: 76  MAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSAVRSPKVERRLPRPLPVAAA 135

Query: 180 QQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK 228
               S      + R  +              +GLR  ++     +   + +        K
Sbjct: 136 VAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGIRRKDAPVGDIDTLTILGK 195

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281
                 V +       +A                F+      ++     +   +     G
Sbjct: 196 GQKTRMVPVIAPVQAAVADYLAVCPHPLPPDGPLFVGQKGGPLSPRIVQLAVASLRGALG 255

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL--GIKNSR 337
           +    + H +R   AT           +    G  ++   + YTK  D  RL      + 
Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTK-VDSARLLSAFDAAH 314


>gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens
           str. C58]
 gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC
 gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 35/296 (11%)

Query: 70  TLKW--LISE---YRKSAH-WGSLAVNSRISFESYFDQIIRKS--------GDFDYRKIT 115
           T     L++E   +  +      LA N+  ++E    Q +R             D   + 
Sbjct: 10  TFAEPDLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLR 69

Query: 116 TKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R+ + +R+   + A    + L  +R L     ++  V      ++  PK+     +
Sbjct: 70  PVDLRAFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPK 129

Query: 173 PWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           P T     +  +            ++       L   GLR S++             S++
Sbjct: 130 PLTDRQALKITTAEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLR 189

Query: 226 TQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA 277
                     V L     + +             ++   + A              +   
Sbjct: 190 ITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLR 249

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 250 GAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDTARL 304


>gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
 gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479]
          Length = 323

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 87/275 (31%), Gaps = 29/275 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140
            +L+  +  +++S    +     +  Y  I    I         ++K +P S  +   S+
Sbjct: 23  RNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDYFLYLQNNKKLSPRSIRRKYVSI 82

Query: 141 RVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQ-------------FKSFW 186
           +  F +   ++ V       S  + +      R  +K ++ Q                + 
Sbjct: 83  KQFFHYINVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLIATVSKEYKSASTDFYR 142

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVEL 237
               +     E L   GLR  +     ++          +       +     +I   + 
Sbjct: 143 RLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKGNKERMLFISSITVNQK 202

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
              +++      +  +  F+N   ++++       F      A +    + H +R   AT
Sbjct: 203 LQKWIRTRQEFNLQDDALFVNKYGKRLSIYSIENLFYKYRELAHINSEATPHYLRHSFAT 262

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              + GA    +    G  ++   + YT+ + + +
Sbjct: 263 QLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRK 297


>gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10]
 gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2]
 gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10]
          Length = 253

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 82/260 (31%), Gaps = 21/260 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           + EY +        +  +   + S   +         +  +T +  +  + +  K+TP++
Sbjct: 1   MDEYLEYLKVVKKRSERTLYQYRSILREF------TRFEPVTPETWKEYLNTISKNTPAT 54

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  ++    W   +  + I      E    +   +    + D  +      + S  
Sbjct: 55  QRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEACDNSLY 114

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           R  F+ L  +G+R S+     V  +            K      + +    ++ L  +  
Sbjct: 115 RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINISKELVEELMNSGF 174

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            ++         K +        K  A KAG+ K  + H  R   A    + G   +++ 
Sbjct: 175 FEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQ 225

Query: 309 ATYGWKTVDQAETYTKGADR 328
           A  G   +     Y K A  
Sbjct: 226 ALLGHANISTTSIYLKIASE 245


>gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
 gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 25/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            + +VN+R S+ +   + +            I    IR  + +   T     S  + +++
Sbjct: 23  RNFSVNTRQSYTNDLSRYLLYMQQQQKAVESIKLDDIREFIHTLSATGMEARSIARNISA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192
           +R L K+ V ++ V +N   ++ +PK      +  T ++  +                + 
Sbjct: 83  IRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVLTHDEAFKLLDAPLAKDSSSRYALRD 142

Query: 193 RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +   EFL  +G+R S+           +  F     K      V +    +  +      
Sbjct: 143 KAILEFLYATGVRVSELVDVCQNNCFLDEGFIRIFGKGSKERLVPIGSSAVSWIKRYLDE 202

Query: 252 KETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                 N+             ++            +  AG++K+   H +R   AT   +
Sbjct: 203 LRMRIANDRSADFLFLNARGGRLTRMTVYNIVTHYSLIAGISKTISPHTLRHTFATHLLE 262

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G  ++   + YT 
Sbjct: 263 GGADLRAVQEMLGHSSILATQIYTH 287


>gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
 gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVES 125
             TL   ++ Y       + + N+R S+ +   + +           + T  HIR  +E 
Sbjct: 9   RGTLDTFLN-YLTIE--RNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQFIEE 65

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   SS  + ++++R   K+ + +     NP  ++ +PK         T E+M   
Sbjct: 66  LHDIGLEASSVARNISAIRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMAL 125

Query: 183 KSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
                          + +   E L  +G+R S+    G  +L  +   I+          
Sbjct: 126 LEAPLRRHPPGSFMLRDKAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKERL 185

Query: 235 VELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK 284
           V +     K L           +          N+   K++        +  A  AG+ K
Sbjct: 186 VPVGRNATKWLKRYLEELRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIEK 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT   + GA    +    G  ++   + YT 
Sbjct: 246 PISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTH 287


>gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000]
 gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD
 gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15]
 gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus
           NA1000]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 27/282 (9%)

Query: 72  KWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVES--- 125
           +     + +       A  N+  ++    +           D      + I +  +    
Sbjct: 5   EAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGA 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  +P++A +  +++R  +++ + + +   +P   V  PK      +   ++++++  + 
Sbjct: 65  RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAA 124

Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
            S      G +     E +  SGLR S+     +  L  +    I   K G      L D
Sbjct: 125 ASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLND 184

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                +                     F       ++   +     +  A  AG+++   
Sbjct: 185 AARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 245 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 286


>gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
 gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 80/267 (29%), Gaps = 20/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
             L+  +  ++     ++     +     +  +   + + + +  +  +P S    L+++
Sbjct: 18  RQLSAYTVRNYLFELRRVEDMLAESTQLIEVSRDQLQSVMATLHRKGLSPRSLSLCLSAL 77

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFE 197
           +  F + +R+  V ++P  ++  PK+     +    + +    S   +     + +   E
Sbjct: 78  KQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMDVDAVSHLLSIEGDDPLSLRDKAIME 137

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
               SGLR ++        ++ +        K      V +    +  +      +    
Sbjct: 138 LFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVVPIGQVALTAIKTWLNCRNQLS 197

Query: 257 INN---------DKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADAGATAH 305
                         ++++                  V    H +R   AT   ++     
Sbjct: 198 CVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVKVHPHKLRHSFATHMLESSQDLR 257

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332
            +    G   +   + YT   D   L 
Sbjct: 258 AVQELLGHANLSTTQIYT-SLDFQHLA 283


>gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
 gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603]
          Length = 297

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 91/265 (34%), Gaps = 20/265 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
              + ++  S+     Q          D      K  R+ +    S+    ++  + +++
Sbjct: 16  RHFSDHTLKSYHDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R  +++ + Q+   +NP + +  PK++    + + +E+M+           +G + ++ 
Sbjct: 76  LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVDTDSKKGMRDKVI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248
            E L  +G+R S+      Q L           K      +   +   + +         
Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304
              +  +   +N   Q +              + +GV N   H +R   AT   + GA  
Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             + +  G   +     YT  +++ 
Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280


>gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1]
 gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I+ Y         L+ ++   +      +   +       +T   +RS V        SA
Sbjct: 6   IAAYLSYLQHVRQLSAHTLRGYAHELAALTAFASGRPLASLTAADMRSAVARAHAGGLSA 65

Query: 134 I---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
                 L++ R  ++W  ++  +  NP  +V  PKR     +  + +D    M+      
Sbjct: 66  RSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMESAFPDT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIIT 234
            EG + R   E    SGLR ++     V ++  + +                        
Sbjct: 126 PEGLRDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELSVLGKGGKERK 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVN--K 284
           V +    ++ L      +E +   +           +M         K  A  AG+    
Sbjct: 186 VPVGRKALEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPGVVRERVKRAARVAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223]
 gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223]
          Length = 376

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%)

Query: 21  IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F+    R++  +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                     ++   S   +   I    GD     +T +HI    +    +   A + L 
Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161

Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + V+ + A   EY              +    +        K       S         
Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +    L+ +G RC++ C       +   + +   KTG             L     + + 
Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
            F+  +  Q         +++       + +   H +R   A+I+         +    G
Sbjct: 282 LFWHQSPSQPFTPVCLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    YT  A   R   + +  +S ++  +
Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373


>gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 316

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 90/308 (29%), Gaps = 37/308 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKH 128
           +  +          A N++ ++       I        +   +T+  +R+ +   E R  
Sbjct: 9   LDAFLDMLAAERGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTSDGVRAYLASLEPRGM 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++  + ++++R   K+     +   +P  ++E P+R        +  ++ +  S   E
Sbjct: 69  SAATVARRISAIRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEVDRLLSVARE 128

Query: 189 GS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           G               +     E L  +GLR S+         +     I  +  G    
Sbjct: 129 GLDDEKRPLRERLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFITIRGKGGRER 188

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
                         + KLL  T  G             +       F       GV    
Sbjct: 189 LAPLTDRAKSALADYRKLLDATAPGLAEGPFLFPADSDSGHLTRQAFARDLKMLGVVAGL 248

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                  H +R   A+     GA    +    G   +   + YT   D     +   R +
Sbjct: 249 SAAQVHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAM--VRDL 306

Query: 340 SSVVDSDD 347
             + DS D
Sbjct: 307 HPLSDSGD 314


>gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
 gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068]
          Length = 323

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 97/313 (30%), Gaps = 37/313 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFD-YRKITTKHIRSGVESR 126
             I ++ +        A  +  S+      +        G      +IT   +R  V + 
Sbjct: 3   AAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSAL 62

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +S  + L S+R  +K+A R+     NP   +  P++  +       +++ +  
Sbjct: 63  HEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLL 122

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                    G + R   E L  +GLR S+      + L  +   ++ +          L 
Sbjct: 123 EAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLG 182

Query: 239 DGFMKLLAMTPIGKE--------------------TFFINNDKQKMNATQFSIWFKAKAT 278
              ++ +      ++                      F N   +++     +   +    
Sbjct: 183 SFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLK 242

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KN 335
             G++   + H +R   AT   D GA    +    G K++   + YT  +      + + 
Sbjct: 243 LTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYER 302

Query: 336 SRRISSVVDSDDP 348
           +   +       P
Sbjct: 303 AHPRARNKSGRPP 315


>gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230]
 gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230]
          Length = 368

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 16/300 (5%)

Query: 60  YINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            I+  R  P T+      ++  +            +  S+ +  +      G    R IT
Sbjct: 7   RIDVGRAPPGTIDEDPRIVVERFLTVLEASGADEKTVKSYRAALNDFFSFIGWKPIRSIT 66

Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +      R       +      +    ++ + +          L +E P  +    R
Sbjct: 67  IDDVYRWRAERLRKGFPNAKYNDRRSRESTMYYYMLFLRRFFRWLGLDIEIPGVRRPRRR 126

Query: 173 PWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228
                K +        S      L    LL +GLR  ++       +   N    ++  K
Sbjct: 127 EIQTLKPEEISRLFNASRDLMDLLILSLLLETGLRAEEALSITYGDIDLHNREIRVRNAK 186

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
            G    V + D  +++L+     K           ++ +      K+ A +AG++     
Sbjct: 187 YGEERIVFIGDLTLQVLSTITSIKPVAPDERVI-PISYSGLYKRLKSLAKRAGIDPQKVR 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT +   G     L    G + +   E Y     R  +  +  +   S++ +
Sbjct: 246 PHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLL-REDVKDQYLKSFRSILGN 304


>gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
 gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus
           gasseri 224-1]
          Length = 386

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/381 (15%), Positives = 131/381 (34%), Gaps = 51/381 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSP---- 64
           +T+ +T++GK  Y F+   G+                +Y  AL      ++ +       
Sbjct: 7   ITRYKTQNGKKRYRFKVYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKVAKGTYTG 66

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              K      L   + ++    ++ V++  + + +F   I+ + G+    KITT   +  
Sbjct: 67  NENKKHKFSELYEMWLENYK-NTVKVSTLSNTKLFFRLHILPELGNLYIEKITTFKCQKI 125

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177
           V       P +   +      +FK+AV  + +A NP  SV +PK + E            
Sbjct: 126 VNKWFKELPKTYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEKKPFTNFYSKNE 185

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230
            ++   ++   +G +  + F  L Y+G+R  ++       +  +  +IK  KT       
Sbjct: 186 LNIFLKEAKECKGLKVYMLFRLLAYTGMRRGEALALKWSDIDFSNQTIKINKTVTTAEHA 245

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267
                      +  T+ +    +K L+     +           ++              
Sbjct: 246 ALIIGTPKTKASYRTIAIDRQTIKYLSGWRKEQRKQLFQLGFNALSDDQLIFSNGDNTLI 305

Query: 268 ---QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                  W ++ +  AG+   + HG R   A++  +AG    ++    G  ++      Y
Sbjct: 306 RQATVRKWDQSISKHAGLKYITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTMNIY 365

Query: 323 TKGAD--RIRLGIKNSRRISS 341
           T      + +     ++ +  
Sbjct: 366 THVTKSAKKKTADNFAQFMEG 386


>gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
 gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626]
          Length = 311

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
             + E+         L+ N+  ++E   +         G  +   +T + + + +   + 
Sbjct: 5   QALKEFLAYVAVERGLSHNTLDAYERDLNGYSDWLSSCGIHNPCAVTQQILETYIAELRE 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181
               P+S  +   ++R   ++ V ++  A +P   +    R        ++E       Q
Sbjct: 65  IGLAPASVERHTAAIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISREKAAELLDQ 124

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + +   E L   GLR S+     V+ +  +   ++          V +   
Sbjct: 125 PFERSPRGIRDKAILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVFGKGSKERVVPIFGT 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVN-KSAHGV 289
             + L     G    F+ + +             +         A     G+     H +
Sbjct: 185 AQEALREYLEGARGAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAYGRAVGIENLHPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           R   AT   + GA    +    G   +   + YT   DR  
Sbjct: 245 RHSFATHLLEGGADLRSVQELLGHVDISTTQLYTH-VDRSH 284


>gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
 gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V + Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M         K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292


>gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
 gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK- 127
            I  +  +      L+ N+  ++                          H+     +R  
Sbjct: 8   AIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHA 67

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +SA + LT +R  F WA+R+  +A +P + +   ++     +  T+  ++      
Sbjct: 68  QTRATSANRRLTVLRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAP 127

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                 G + R   E +  SGLR S+        L      ++    G     V   +  
Sbjct: 128 DTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLAEGVLRITGKGGKERLVPFGEEA 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + L                 +  F+      M+   F +  K  A  AG+    S H +
Sbjct: 188 RRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 248 RHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RERL 288


>gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 303

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 35/296 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHT 129
           I  + +        + N+  ++    +Q   +     G  D   +     +   + R  +
Sbjct: 7   IDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALR----QLMADYRSLS 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SSA + L+++R  F + + +   A NP L + RP  +    R  T +++++        
Sbjct: 63  ASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAE 122

Query: 190 S----------QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELP 238
           +          +  L  E L  SGLR ++         L+   + I   K      V L 
Sbjct: 123 AEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVPLS 182

Query: 239 DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                              +   + K  ++  +     +  A +AGV+    S H +R  
Sbjct: 183 ARARAAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLRHA 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   + GA    L    G   +   E YT    R         R+  +V+   P
Sbjct: 243 FATHLLEGGADLRALQLMLGHADIATTEIYTHVDSR---------RLVELVNRRHP 289


>gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 28/288 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSG 122
           +  +  +          + ++  ++ +            +    G      +    +R+ 
Sbjct: 10  RDALEAWLTHQRVIEGASPHTIRAYAADVAGWLAFLAGHLGEGYGLPALASVPHADLRAW 69

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +       S  + L+++R    W   +E V     LS   PK + +  RP ++ D 
Sbjct: 70  MAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEGDA 129

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                  K    
Sbjct: 130 KALLLTVAEDGAEDWIRARDLAVVTLLYGCGLRISEALGLPATAHPLPEVLRILGKGSKE 189

Query: 233 ITVELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
             V       +       L    +     F       +N    +   +      G+    
Sbjct: 190 RLVPAIPAAREAVARYAALCPFDLTSGPLFRGARGGALNPRLVAKVMERARATLGLPPTA 249

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           + H +R   AT   +AG     +    G  ++   + YT   D  RL 
Sbjct: 250 TPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYT-AVDGARLM 296


>gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
 gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974]
          Length = 340

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 97/323 (30%), Gaps = 51/323 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109
           + G+  +      P      L   +  Y          + ++  S+    D+ +    + 
Sbjct: 1   MAGAADRVRTAEGPLTSDK-LSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFLRER 59

Query: 110 ---DYRKITTKHIRSGVES------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D  ++T+  I   +             SSA + L+++R L K+AV +   A +    
Sbjct: 60  SATDLAQVTSAQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHG 119

Query: 161 VERPKRKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           V+ P+      +    +          M   +S      +     E +  +G R S++  
Sbjct: 120 VKPPQPGRRLPKALPVDQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVG 179

Query: 212 AGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF--------------- 255
             +  +     S +   K      V L    +  L    +                    
Sbjct: 180 LNLLDVDFQARSARVLGKGDKERLVPLGGPAVAALDAYLVRGRPALLAARIPRGSASRSY 239

Query: 256 -------------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
                        F+N   ++ +        +  A KAGV    S H +R   AT   + 
Sbjct: 240 SREAPPGKATNALFLNARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEG 299

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G  +V   + YT
Sbjct: 300 GADVRVVQELLGHASVVTTQIYT 322


>gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 322

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT KH++  +         P++    +++
Sbjct: 38  QAEGFRKRTIDDYTKLFRYFMRELNIDKVEIITAKHVQMYINKLISRELAPATVNIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK    Q Y+  NP +   + +     I       +++           G +   A
Sbjct: 98  LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFCVVDKTTYAGYRDYCA 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +     L  +  +I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                      AG++K    S H +R   AT     
Sbjct: 218 SREYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 393

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 95/327 (29%), Gaps = 16/327 (4%)

Query: 14  ERTRHGKIIY--YFRKGHG-RRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65
                G+ +Y   +R G   RR+ +      T   A   A+                  R
Sbjct: 32  RVYPSGRKMYLAQYRAGGRSRRVNIGLHGAMTPEMARTEAMKYLSDVRLGADPAGERDRR 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           K   T+K     +           ++   +E   D  I  + G      IT   +    +
Sbjct: 92  KASPTIKEFSKRFLSDHVALHCKASTYGEYERSIDLFINPRFGSHRIIDITRADVVGLHQ 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180
           S +H P  A + L  + V+F  A              +  + + E    +   D      
Sbjct: 152 SMRHIPYQANRTLGVLSVMFTVAHAWGVRTDGVNPCWKVKRYREEKRERYLTPDELARLG 211

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELP 238
           +     +E  +       LL +G R S+      +++      ++   +     +     
Sbjct: 212 KVLDCATEEPEAANCIRLLLLTGCRLSEIQTLKWRYVDYRNGLLRLPDSKTGAKLVPIGK 271

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                L  +  I    + I    +  + T     ++    +AG++    H +R   A+ +
Sbjct: 272 AAIKVLKTIPKIDGNPYVITGRMEGQHLTDMQKPWRRLRKRAGLDDLRIHDLRHSFASDA 331

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     +    G   V     Y  
Sbjct: 332 LQLGQDLTMIGRLLGHTQVQTTARYAH 358


>gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 304

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 34/300 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQII----------RKSGDFDYRKITTKHIR 120
              +++Y +   +    + N+  ++                    +       +T   +R
Sbjct: 2   AEALAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLR 61

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             +        + ++  +  + M+  F+WA+R      +P   +  PK +        ++
Sbjct: 62  GWLSEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQD 121

Query: 178 D------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------- 220
                      +       + +L  E L  +G+R  + C   +  +  +           
Sbjct: 122 QAEQALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGD 181

Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
              ++                    L     G         K+    T   +  +  A +
Sbjct: 182 KQRAVPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQERVAEE 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           AG+     HG+R  +AT   + GA    +    G  ++   + YT    +R+R   + + 
Sbjct: 242 AGLPSLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAH 301


>gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis
           G4]
 gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 31/292 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESR 126
           L   I+ Y  +      L+ ++   +    D++ + +       +T   +R   +   + 
Sbjct: 2   LDDPIAAYLSNLKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDVRGAVARAHAG 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
             +  S    L++ R  ++W   +  +  NP  +V  PKR     +  + +D    M   
Sbjct: 62  GLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAP 121

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------G 230
               +EG +     E    SGLR ++       + Q + +                    
Sbjct: 122 LPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVRGKGN 181

Query: 231 TIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               V +    +  L                  F++    +M         K  A  AG+
Sbjct: 182 KERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAGI 241

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 242 PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292


>gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V +  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 366

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 77/269 (28%), Gaps = 15/269 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S
Sbjct: 92  EGYLELLEQKRYSPSTIKTYRAYFSDFMEYHKGRNIDRLKVADINKYILYLVNEKKISVS 151

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++    +  + +         + R K         ++ ++ +         +
Sbjct: 152 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSRNEVCRIL-SCLSNRK 207

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246
            R     +  +GLR S+      + + +    +     G      L          +   
Sbjct: 208 HRCMISLIYSAGLRRSELLNLTPKDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYFK 267

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F      +  +A+      K  A++AG+    H   +R   AT   + G   
Sbjct: 268 EYRPQKWLFEGETPGEPYSASALVKVLKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDL 327

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G   +     Y       +  I
Sbjct: 328 RTIQELLGHNDIKTTSIYLHVTSTHKSSI 356


>gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 330

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
           L+ E+    +   + + N+  ++       +R                + D   +    I
Sbjct: 20  LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLI 79

Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
            S                R +TP +  + + S+R  + +  ++ + ++ NP   +E PK 
Sbjct: 80  ESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139

Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                   T ++ ++  +        +        L  GLR S+     +  ++++  + 
Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276
              K     TV L D  +  +      +    + + K        ++++        K  
Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
              A +     SAH +R  +AT+    G      L    G   V   + YT   D +++ 
Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318

Query: 332 GIK 334
            + 
Sbjct: 319 AVN 321


>gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
 gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86]
          Length = 347

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 80/269 (29%), Gaps = 17/269 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
           +  I ++ K       + ++  ++       +         +IT + +           K
Sbjct: 72  REQIQKFSKWLFSKRYSPSTIKTYTEALQSFLLFFDQKPITEITNQDVIVYNNEYILKNK 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S   Q + ++++ FK               + RPKR        +KE+++       
Sbjct: 132 LSASYQNQIVNAIKLYFKTIKE----VKIEVDKIHRPKRSKLLPNVLSKEEIKLILEAH- 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245
              + +     +   GLR S+        + +      I+  K        L    + +L
Sbjct: 187 SNIKHKTMLSLIYSCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVML 246

Query: 246 AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                  +      + Q      +        K    KA +    S H +R   AT   +
Sbjct: 247 REYYSNYKPKSWLFEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSYATHLLE 306

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
           +G     +    G  +    E YT  + +
Sbjct: 307 SGTDLRYIQELLGHSSTKTTEIYTHVSTK 335


>gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
 gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 29/291 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L   +  +         +A N+ +++ +     +           G     ++T   +R+
Sbjct: 8   LTATLDHWLDHERALAGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLSDMRA 67

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +   +    +A    + L++++  ++W   +E       LS   PK + +  RP +   
Sbjct: 68  WMAHERGRGVAARSLARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPLSAPA 127

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                             ++       L   GLR S++     +          T K G 
Sbjct: 128 ASDMIDQIGLQACDPWVAARDTAVVTLLYGCGLRISEALSLQGRDAPLPPVLRITGKGGK 187

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284
              V + D     +A                F       +         +    + G+  
Sbjct: 188 QRIVPVLDIARDAVAGYLRLCPYEQAADAPLFRAIRGGPLAPRAIQKVVEQTRLQLGLPG 247

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   H +R   AT    AG     +    G  ++   + YT   D  +L  
Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYT-AVDAAQLMA 297


>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
           Nb-255]
 gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
 gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
          Length = 321

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 91/310 (29%), Gaps = 34/310 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK 113
             + E +  P    + +   I  +         L+  +  ++     Q +   G     +
Sbjct: 2   AKRAEPLPDPACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQ 61

Query: 114 IT--------TKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +T           IRS + +R+       S ++ L  +R   ++  R+    +    ++ 
Sbjct: 62  VTLEGFVALEPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAG 213
            PK      +P      ++F        + R  + +            SGLR S++    
Sbjct: 122 APKVGKSVPKPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 181

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------K 263
            + +           TG      +      +LA+          +   +           
Sbjct: 182 RRDVPPPGAGDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPHSLPPEGPIFVGARGGP 241

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + A    +         G+    + H +R   AT     G     +    G  ++   + 
Sbjct: 242 LRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQI 301

Query: 322 YTKGADRIRL 331
           YT G D  RL
Sbjct: 302 YT-GIDSERL 310


>gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 328

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-------------------------DYRKITTKHI 119
            + + N+   +       +R                                + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRNFLRYLKAKELNMLSQIEKIEDLENIDVSSFEIEKLKTLTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T E+ ++  S     ++ R      L+   GLR S+     +  +++++  I  +     
Sbjct: 141 TLEESKKLLSAIDGENKERDFAMITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L     + +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila
           L48]
 gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC
 gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++ +++    +++I    +          ++      +      
Sbjct: 5   LEAYCAHLRNERQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQLVARQHHHG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +  S  + L+++R L+++  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     ++HL           K G    + +     
Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELAGLDLEHLDLTGGLVQVLGKGGKSRVLPVGRKAC 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++     +  K    +  G +   H +R   A
Sbjct: 185 EALQEWFRLRGIAAPRDGAVFITRQGNRLSTRAIQMRVKTFGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHLLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 296

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 20/274 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L+  + +Y         L+  +  S++      +      G  D+R++    IR  +   
Sbjct: 2   LQDWLKKYWDYLRIERQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQG 61

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K +     S    L+S+R  F++ +R + + +NP   +  PK      +    E + Q  
Sbjct: 62  KKSGLHEHSLALRLSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLL 121

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
              S+     + +   E +  SGLR S+     ++ +           K      +    
Sbjct: 122 DIKSKDPLSLRDKAIMELMYSSGLRLSELRGLNLEDINFKARELKVLGKGNKERILPFGR 181

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
                L                 FI++   ++ ++      +    K G+N     H +R
Sbjct: 182 YAAGALHQWLEVRLQFNPQDNALFISHLGHRLTSSAIQQRLEQWGIKQGLNAHLNPHKLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   +A +    +    G + +   + YT 
Sbjct: 242 HSFATHMLEASSDLRAVQELLGHENLSTTQIYTH 275


>gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
 gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR----K 127
           L++ + K     + + ++  ++       +        +   +    +R  +  +    +
Sbjct: 6   LLNMWLKEREIQNQSKHTLQAYARDVSDFLEFCQREQLNLNDVEATDLRQFLAEKVEQHQ 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------ 181
            +PSS  + L+S+R   KWA + +++A NP    +  ++          E + Q      
Sbjct: 66  LSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIIDQPA 125

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
              +       + +   E L  SGLR ++     ++ +  N   ++          V   
Sbjct: 126 PENEIQQQMWLRDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTRIVPFG 185

Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 +         +          FI      + A Q     K +A +AGV  +   
Sbjct: 186 SKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVNVDLHP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+           +    G   +   + YT   D   L 
Sbjct: 246 HLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTH-VDFDHLA 290


>gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12]
          Length = 362

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFVLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L        T  +    +    M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSKSGGIMTPSLPRKWLLQIIKGIDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 328

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L     + +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|291536947|emb|CBL10059.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 416

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 108/357 (30%), Gaps = 32/357 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + GK    F   + + I+     +  F     +       +            T + L  
Sbjct: 8   KTGKWFAKFYYTNWQGIK-KQKWKRGFATKKEAL---GFERDFLEQQSANPDMTFQNLYE 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
            Y +      L  ++ ++ ++     I+   G     +I    +R        +P     
Sbjct: 64  IYMEDMAAR-LKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMSSPNNYSQ 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEG 189
           +   +  T +  +  +A R   +  NPC       +   E +  WT  +   F+    + 
Sbjct: 123 TYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYNEYIVFREGVKDK 182

Query: 190 SQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQKTGTII 233
               + FE L ++G+R  +                S     Q +         +   +  
Sbjct: 183 PLSYICFEVLYWTGMREGELLALSPADIDIDNKLISINRTYQRIGGKDVFTSPKTRKSKR 242

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           T+ +PD   + L+     +     +     +  +  S          G  K   H +R  
Sbjct: 243 TIPIPDFLCQELSDYIQSRYMLDADERLFPVTKSYLSHEMIRGCKITGAKKIRIHDIRHS 302

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            A++  + G  A  L    G + V     TY+      +   +    + S+  +D P
Sbjct: 303 HASLLINQGCDALMLADKLGHEKVSTTLNTYSHLFPHKQ--QELVHSLESLQATDSP 357


>gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068]
 gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068]
          Length = 314

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 26/278 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
           EY ++     LA NS  +++    +  R  GD    K+T + +   +   +     P S 
Sbjct: 29  EYLRTE--CHLAKNSVAAYQRDMTRFCRWLGDRFIPKLTVRDLTDYLAFMREENLDPKSI 86

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + + ++++  ++   +  +  NP   +   K         +     +            
Sbjct: 87  ARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQPYDPLF 146

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248
            + R   E L  +G R S+     V+ L+          K      V L D  +  +   
Sbjct: 147 RRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGDPALAAVEAY 206

Query: 249 PIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
                                +++  Q++   +     K  A + G     S H +R   
Sbjct: 207 LEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPASMSPHTLRHSF 266

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT     GA   ++    G  ++   + YT   D+ RL
Sbjct: 267 ATHLLSGGADLRQVQELLGHASIGTTQIYTH-VDQSRL 303


>gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
 gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759]
          Length = 323

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 83/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  +   +    ++++    +    KITT+ +R  +   + T + 
Sbjct: 47  DFLDMFLTAKHLEGCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTTNNC 105

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +      S+   F W   ++Y+  +P   + + K           E ++        
Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI-LRDNCN 164

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + R   +FLL +G+R  +  R  +  +  +                         L  
Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +    I      N    ++  +   +  +    K GV K   H  R+  AT + + 
Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMATRAIEK 284

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 285 GMPIEQVQKILGHEQIDTTLRYA 307


>gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 325

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 34/316 (10%)

Query: 65  RKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIR 120
              P +L   + EY +   +    + N+  ++       +   G     + T    + + 
Sbjct: 2   TSTPPSLSRALEEYEEHLQFVVGRSENTITAYRKDLKAALE--GLDSVDEFTLEHARDVL 59

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
                  H+ SS  + ++S++    +   + +V  NP  ++  PK      R    E   
Sbjct: 60  GWALDAGHSRSSMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQAT 119

Query: 179 --------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
                     +  +     ++     E L  +G+R ++     +  +      ++     
Sbjct: 120 AVLDRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKG 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKA 277
                V         +      ++      + Q            ++N  Q         
Sbjct: 180 NKQRVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELT 239

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI--K 334
             AG  + S HG R  +AT   + GA    +    G  ++   + YT         +  +
Sbjct: 240 DAAGAPRMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQ 299

Query: 335 NSRRISSVV--DSDDP 348
              R  S        P
Sbjct: 300 AHPRAESPAQQPIRRP 315


>gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC
 gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens]
 gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens]
 gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127
           +  Y +       ++ ++  ++    ++++        G +    I   + + + +  + 
Sbjct: 5   LDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWCQKQNIGSWAALDIQRLRSLIARLHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRALQLLEGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L   +       K      + +     
Sbjct: 125 EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGRKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L              +  F++   +++      +  KA   +  G N   H +R   A
Sbjct: 185 EALEQWLPLRALTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLA 281


>gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 339

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 115/335 (34%), Gaps = 19/335 (5%)

Query: 12  TKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             + T + +  +       F    GR+IR    +          AL      +    +  
Sbjct: 10  VYKVTGNRRKPWRAIKTIGFDICKGRQIRKTVGY----FETRKEALESLITFKFDPYNIE 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T+  + + + K  H+  L+  S+ ++ES +        D    ++ T H++  + +
Sbjct: 66  VENLTIDDIYNRW-KEMHFKKLSKLSQSNYESNYTHFKP-LKDRKIAELKTIHLQEFMNN 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + + SS       +  LFK+A++ + +  +    +E  K +    R    ++       
Sbjct: 124 LELSESSKRNIKRMLNQLFKYALKYDIIEKDYTQFIELGKVEKILERKIFTDEEISKLWK 183

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           + E  +       ++Y+G+R  +      Q +     +I+           L    MK+L
Sbjct: 184 YKE-LEWVDTILIMIYTGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMKIL 242

Query: 246 AMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
                            +     + + +  +FK    K  +  + H  R   A++ ++A 
Sbjct: 243 PFIKTRMTPSNEYLILSRKEKNLSYSSYITYFKKLMKKLDMEHTIHDCRHTFASLLSNAD 302

Query: 302 ATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIK 334
           A    +    G    D  E  YT    + ++  I 
Sbjct: 303 ANKVSIAKIIGHSNYDMTEKIYTHKDIEELKKAID 337


>gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp.
           X514]
 gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513]
 gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514]
 gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561]
 gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513]
          Length = 330

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
           L+ E+    +   + + N+  ++       +R                + D   +    I
Sbjct: 20  LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRRKVSPDVEFDEIDISDVDVDLI 79

Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
            S                R +TP +  + + S+R  + +  ++ + ++ NP   +E PK 
Sbjct: 80  ESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139

Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                   T ++ ++  +        +        L  GLR S+     +  ++++  + 
Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276
              K     TV L D  +  +      +    + + K        ++++        K  
Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
              A +     SAH +R  +AT+    G      L    G   V   + YT   D +++ 
Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318

Query: 332 GIK 334
            + 
Sbjct: 319 AVN 321


>gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
 gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L      ++T          +           K  A  A     G + S 
Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 329

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 48/295 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123
           Y ++      ++N+   +        R                 D D   I  + +R   
Sbjct: 23  YLETIKST--SINTIDGYRIDLTIFFRFMMIYKGKVNSDSVEFEDIDISVIDDEFLRGIK 80

Query: 124 ES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
                         R ++  +  + + +++  FK+   + + +  NP L +E PK     
Sbjct: 81  LRDLYAFLSFTEKYRDNSSYARARKVATLKSFFKFLFGKAKVITENPALELESPKINKRH 140

Query: 171 IRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               T           ++     S+      F L  G+R S+ C   +  ++++  +I  
Sbjct: 141 PVYLTLNQSIHLLESLNKNDKNYSRDYCILMFFLNCGMRLSELCSIQIDKIRDDTLTIIG 200

Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276
           +      TV L D  +K LA            P  K+  F+++    +N     I  K  
Sbjct: 201 KGN-KERTVYLNDACLKALANYLNVRDDSKALPDNKKFLFLSSRNGPINKRTVEIMIKKH 259

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
            T AG+     + H +R  +AT+    G      L +  G   +   + YT   D
Sbjct: 260 ITNAGLTDDKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVDD 314


>gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149]
 gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33]
          Length = 305

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 83/293 (28%), Gaps = 30/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITTKHIR 120
                  Y ++      + ++  ++    +++                    +       
Sbjct: 6   FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +  R     +  + L+S R    W V++  +  +P   ++ PK+     +   +E + 
Sbjct: 66  RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
           +      +G      +    FE +  SGLR S+        +  +  +   T K      
Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185

Query: 235 VELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKA-----GVNKSA 286
           V L    ++ L                   +           K  A  A     G + S 
Sbjct: 186 VPLVGKSVEALKNYLSLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 292


>gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 100/336 (29%), Gaps = 24/336 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSPRKKPTTLKWLI-SEYRKS 81
           G  R +++    + +   A   A                    +   T K  +  +Y   
Sbjct: 54  GRSREVKIGKAADISVEQARRKAKELRAQVALSGDPAGDKDKHRAVPTFKAFVTEQYLPF 113

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
           A     + + + S      ++I   G     +I T  I       +    +PS+  + + 
Sbjct: 114 AKDRLRSYSDQESMCRL--RLIPTWGAKRLDEIRTTDIVELQRRLRDENLSPSTVNRHVA 171

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
             + +F  A+R +              R+ +  R  T ++M++      +      A   
Sbjct: 172 LAKRVFNLALRWQAYEGRNPCQHVEFAREHQRERFLTPDEMRRLFQALDDEPSRSAANCI 231

Query: 199 LLY--SGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFMKLLAMTPIG 251
            L   +G R S++  A    +            +++                L+ + P  
Sbjct: 232 ALLALTGARKSEALNARFDDIDLPNRVWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEP 291

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
              +   N             +      A +      H +R   A++   +G + + +  
Sbjct: 292 DCPWLFPNAASDGPIENIRRCWNRLKAAATLPSDTRPHDLRHSFASLLVGSGQSLYSVQT 351

Query: 310 TYGWKTVDQAETYTKGADR----IRLGIKNSRRISS 341
             G  + +    Y+  ++       LGI+ S R  +
Sbjct: 352 ILGHASPNMTARYSHLSNTSLVDRVLGIQASDRAGA 387


>gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
 gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908]
          Length = 299

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTP 130
              Y  +     L+ ++  ++    +++ +   D   +  ++ + I+S +     R  +P
Sbjct: 9   FESYLSAE--RQLSKHTVRNYLFELNRVDQLLDDSTSWLSVSREQIQSAMSQLHRRGLSP 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  +  NP +++  PK+     +    + +        +  
Sbjct: 67  RSLSLTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVSHLLEIDGDDP 126

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q +        K G    + +    +  + 
Sbjct: 127 LSLRDKAIMELFYSSGLRLAELAALNISDIQFSERLVKVLGKGGKERILPIGKMAISAID 186

Query: 247 MTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                +      +D   +                          +    H +R   AT  
Sbjct: 187 KWLACRRLIPCEHDALFITNKGTRLAHRSIQARLSKWGQEQALNMRVHPHKLRHSFATHM 246

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++ A    +    G   +   + YT   D   L 
Sbjct: 247 LESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280


>gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           Bt4]
          Length = 312

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 26/293 (8%)

Query: 65  RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIR 120
           R   T++       + +      L+ N+  ++        +         +       + 
Sbjct: 18  RDSRTSIDLFCDAMWLEH----GLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTERPMLE 73

Query: 121 SGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             + +R     +S+ + L+  R  + WAVR+   A++P L +   K+        ++  +
Sbjct: 74  GYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQV 133

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +   +     +    + R   E +  SGLR S+        +  N   ++          
Sbjct: 134 EALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERL 193

Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
           V   +     +                    F+      M   QF    K  A +A V  
Sbjct: 194 VPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRA 253

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           + S H +R   AT   + GA    +    G   +   + YT  A      +  
Sbjct: 254 HLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHA 306


>gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
 gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4]
          Length = 320

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 31/294 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRS 121
           L   +  +    A    LA  + +S+E    Q +R   G         D  ++     RS
Sbjct: 17  LNTALGAWLDHLADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRS 76

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +  R+        S  + L+ +R   ++  ++  +      +V  P+      +P T  
Sbjct: 77  FLAKRRQADKAGSRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVP 136

Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228
           D ++        +S     ++       L   GLR S++           +      T K
Sbjct: 137 DAEEIVSGDLGLESETWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGK 196

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAG 281
            G    V +     + +             N    +       N        +   +  G
Sbjct: 197 GGKERLVPMLPVVTQAIETYIAQCPYPITANGPLFLGARGGALNPRLIQKAMEKMRSALG 256

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +    + H +R   AT     G     +    G  ++   + YT+      L  
Sbjct: 257 LPASATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAA 310


>gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972]
 gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 22/286 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS-- 121
           P +L   +  + +       L+++++ +++     + +        +   +    +R   
Sbjct: 9   PDSLGRPLERFYEYLRSEKGLSLHTQRNYKQQLTTMAQHLNHMGLNQWQQVDAGWVRQLA 68

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS    L+S+R  F + + +  +  NP   V  P++K    +    ++M 
Sbjct: 69  SKGMRDGMKASSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLPKNLDVDEMA 128

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           Q      +     + R   E +  +GLR ++     V+ +  +   I+            
Sbjct: 129 QLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIGKGNKERKAP 188

Query: 237 LPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 + +              +   FI+    +++             K  V  + S 
Sbjct: 189 FAGQAKEWVGKWLKVRSSLLKGDEPALFISQLGARISHRNVQKRMAEWGHKQSVASHISP 248

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 249 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
 gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ]
          Length = 311

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 87/278 (31%), Gaps = 33/278 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
             ++ N+  S++   + + +       + +   +         +  R ++ ++  + +++
Sbjct: 18  KGVSENTVCSYKCDLEDLSQFLRRNGLKIVDASYGDLCEYIRNLNGRAYSAATVARRVSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194
           ++ L  +  +   V  +  LS+E  +      R  ++ D+             EG +   
Sbjct: 78  IKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLLDIAKADLSAEGKRLYA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251
               L  SG+R S+    G   +   +          II  +     + LL    +    
Sbjct: 138 IVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIKGKGNRERLVLLNEVAMDSIR 197

Query: 252 -----------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
                            +  F      Q ++  +     K  A  AG++    S H  R 
Sbjct: 198 AYLEVRKCFIAGENTESRWLFPGAKYDQCISRQRVGQLLKELAISAGIDPEKVSPHKFRH 257

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + G+    +    G   +   + YT  A   
Sbjct: 258 SFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQ 295


>gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
 gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries]
 gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Florida]
          Length = 316

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 82/272 (30%), Gaps = 30/272 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130
                 + N+  ++E       R                +++ +   RS +  R      
Sbjct: 22  REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 81

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            +S  + ++ +R  F++   +  +  +   ++ +P  +    +   +  M++        
Sbjct: 82  SASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDL 141

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +       L   GLR S++       L+ +       K      + +      ++
Sbjct: 142 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 200

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                      ++               +++ T F+   K    + G+ ++   H +R  
Sbjct: 201 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 260

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G  ++   + YT 
Sbjct: 261 FATHLFLEGADIRVVQELLGHASLATTQVYTH 292


>gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
 gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 94/279 (33%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP 130
           +  +         L+  +  ++  +   +       G  +++ +    +R      +   
Sbjct: 12  VETFLHYLRVERRLSPLTITNYRRHLVVLASMSLDMGIHEWQALDPAKVRMFASRSRRAG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+S+R    W V Q  +  NP  +V  P++K    +    +++ Q  +   
Sbjct: 72  LQSASLALRLSSLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDEVNQLLNINL 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +HL+  +       K      V +    ++
Sbjct: 132 NDPLSVRDRTMMEVMYGAGLRLSELVGLDCRHLELASGEVWVQGKGSKERKVPVGRIALE 191

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E F   ++         ++++A      F+    + GV  +   H +R   
Sbjct: 192 WLQRWLEMRELFEPEDNAVFISTKSGKRISARNVQKRFEQWGVRQGVNSHIHPHKLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 252 ATHILESSGDLRAVQELLGHANLSTTQIYTH-LDFQHLA 289


>gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
 gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 28/285 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126
            L  EY +     + +  + + +    +Q ++     G  +  ++    +R  +      
Sbjct: 9   QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
           +    S  + ++S+R  +K+ +R+ + A NP      PK++ +      +E+     +  
Sbjct: 67  QLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREELEALFRVN 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
               + G +     E L  +G R S+ C   +  L     ++    K      V      
Sbjct: 127 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 186

Query: 242 MKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
            + L               P      F+N     +               A +  N S H
Sbjct: 187 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
            +R   AT   + GA    +    G   +   + YT    DR+R 
Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRR 291


>gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
 gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492]
          Length = 294

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130
           +Y       + +  +   + +   ++ R      GD     +  + +R  + S       
Sbjct: 9   DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMDKGLA 66

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            ++  + L+S+R  +K+ +R+  VA++P   V  PK+K        + +M +        
Sbjct: 67  SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240
              EG +  +  E    +G+R S+      + +  +      T K      +   +    
Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293
              + + +              +K     +         +          +S H +R   
Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT   + GA    +    G +++   E YT  
Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
 gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170]
          Length = 363

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 90/258 (34%), Gaps = 9/258 (3%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            EY         A ++  ++ S+F+  I      +   I    IR+ ++   H   S   
Sbjct: 96  EEYLLKLELKRYANSTVRTYVSFFELFINHYKYKELNAINESDIRAFLQKLIHRNVSNSY 155

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              S+  + K+         N    +ERP+++++  +  +K+++       +   + R  
Sbjct: 156 LNQSINAI-KFYYEVVLGMPNRFYEIERPRKESKLPKVISKDEILTIIENTN-NIKHRCI 213

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAMTPI 250
            + L  SGLR S+     +  + +          K  K    +  +     ++L      
Sbjct: 214 VQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLLSKTCLHDLRLYFTKYR 273

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +   F     +K +        K+ A +A +    + H +R   AT   ++G     + 
Sbjct: 274 PQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVLRHSFATHLLESGTDLRHIQ 333

Query: 309 ATYGWKTVDQAETYTKGA 326
              G  +    E YT  A
Sbjct: 334 VLLGHGSTKTTEIYTHVA 351


>gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Rv]
 gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           CDC1551]
 gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis
           AF2122/97]
 gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           F11]
 gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           H37Ra]
 gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           02_1987]
 gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T92]
 gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           GM 1503]
 gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T17]
 gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T46]
 gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           K85]
 gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17]
 gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85]
 gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92]
 gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           210]
 gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN R506]
 gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD
 gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD
 gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv]
 gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551]
 gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97]
 gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C]
 gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11]
 gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46]
 gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85]
 gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17]
 gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987]
 gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92]
 gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           EAS054]
 gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503]
 gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis
           T85]
 gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A]
 gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 311

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----- 128
           Y         +A N+  S+     +  +     G  D  K+    +   + + +      
Sbjct: 11  YLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDS 70

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA + L ++R L ++A  +    ++   +V  P       +  T +++    
Sbjct: 71  GTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLL 130

Query: 184 S--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                          + R   E L  +G R S++    +  +  +  S+    K G    
Sbjct: 131 EGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRL 190

Query: 235 VELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVN 283
           V +    +  L    +                F+N    +++        +  A +AG+ 
Sbjct: 191 VPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGIT 250

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 251 AGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
 gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574]
          Length = 293

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           I ++     +  + +  +  S+               G   +  + +  IR  +ES    
Sbjct: 3   IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMDK 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               +S  + L+++R  +++A+ +E V  +P   V  PK+K    +   + ++       
Sbjct: 63  GNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDSD 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                 +  + R        +G+R S+        +         T K      +     
Sbjct: 123 MWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQRIIPFGAE 182

Query: 241 FMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + LA                FF+ +    M   Q     K   ++      ++ H +R
Sbjct: 183 LAQTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLKKRTPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    L    G   +   E YT  
Sbjct: 243 HTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHT 277


>gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 292

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 88/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E ++ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++ +  +  +I+          V      +  L      +++   
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum]
          Length = 314

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 21/290 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127
           ++ L+  + +        + ++  ++        R  G+        + + +      R+
Sbjct: 5   VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHRE 64

Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R   ++  R+  +      ++  P+          +E++ +     
Sbjct: 65  DLAMRSRSRVLSAIRSWSRFLKRRG-LPAIDPDTLPVPRLPRNLPGVLDEEEILRLLEAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                EG + R        SGLR S+     +  L  N   I+            L    
Sbjct: 124 DPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDGLS 183

Query: 242 MKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
              L +                     +         +  K  A + G+++S   H +R 
Sbjct: 184 CARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             AT     G     +    G   +   E YT   D   L    ++    
Sbjct: 244 SFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAKYHPR 292


>gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse]
 gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse]
          Length = 315

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 89/288 (30%), Gaps = 33/288 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
            +I  + +        + ++  +++        +         + +      + S +   
Sbjct: 5   AVIDHFLEMMSAERGASTHTLAAYQHDLQWAQDELSLHSVSLFSAQKEDLIGLLSLMHIL 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172
               SS  + L+++R  +++   +     +P   ++ P++     +              
Sbjct: 65  GFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKLLDLA 124

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231
                             + ++  E L  +GLR S+     VQ ++   +SI    K   
Sbjct: 125 QLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRGKGKK 184

Query: 232 IITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV 282
              V L     ++L+     ++          F   ++   +     +   K  A +AG+
Sbjct: 185 ERIVLLSKKACQVLSQWLSLRDQRKDAASLYLFPARSETGYIARQVVARELKGLAKRAGI 244

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                S H +R   A+     GA    +    G   +   + YT   +
Sbjct: 245 KSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLE 292


>gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 312

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 27/280 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH 128
           L   ISEY K+      L   +  ++     Q         D+ + +T +    +  +K+
Sbjct: 7   LSNFISEYLKTCETIKKLDSKTIKAYRIDLSQFHTFMLPQEDFTEKSTLNSFLSLLHKKY 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------EGIRPW 174
            P +A + + +++  F + V +E ++ NP   +    R+                    +
Sbjct: 67  KPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVKFREPQVLPRIVPNTIIEIFLRTMY 126

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTI 232
            ++ +      ++   +     E L  +G+R S+ C   +  +    + I          
Sbjct: 127 KQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTYKIIINGKGSKER 186

Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           I     +   ++L+      +        FFIN   ++ +              A ++  
Sbjct: 187 ILQIGNEDVKEILSEYYAAFKTDISKTGWFFINRLHKRYSEESVRSMIVKYLKLAAIDMH 246

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + H  R   AT+  ++      +    G  ++   E YT
Sbjct: 247 ITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYT 286


>gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41]
 gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 632

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 12/263 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--T 129
           + +I+EY  S    +L+  +   +  + ++  +   +     +T + IR      +    
Sbjct: 355 RKIINEYLLSMKLENLSAGTIYQYRFFLNKFFKDKRENCLS-LTPEEIRKYFIPLQKGLK 413

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFWS 187
            ++  + LT +   + + V + Y+ ++P      P++     +   KE++   +      
Sbjct: 414 AATIKKQLTILSSFYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFLEKEEIAKVRQLCEKR 473

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              + R+  E LL SG R S+        +     + +    G  I          +L  
Sbjct: 474 NQLRNRVMVELLLTSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETCAILLE 533

Query: 248 TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN------KSAHGVRKFSATISADA 300
             +                T+  I   +    + G++         H  R   AT     
Sbjct: 534 RLLESYIDEHPALFISERGTRLGIRQMQKIVEQVGIDAKIKSSLHPHRFRHTFATELLTK 593

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           GA    +    G K +   + Y 
Sbjct: 594 GADLSFIADELGHKQLQTTKIYA 616



 Score = 39.7 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 54/213 (25%), Gaps = 13/213 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPS 131
           +I+E+  +        ++ I    +  Q  +     ++  IT   I           +  
Sbjct: 131 IINEFLVNLKNSGKRKSTIICKRVFLQQFFKDF-KKEFIYITITEIEDWFLKNGHLWSDK 189

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L+++R  + +      +          P R     R +  +     +        
Sbjct: 190 TGSGILSALRTFYDFCWETRIIENP-------PLRNKRKDRNFQDDGGFLIQIRLPNIEN 242

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            +   E+LL    +                +   T       T+     F   +      
Sbjct: 243 RKTINEYLLNLKHKNKSHRTIEEYRFILQAYFKDTDTHF---TLLKNYDFQNWIQSYKGV 299

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           K    ++N      +       K    ++ +  
Sbjct: 300 KNEKTLDNYMSIFRSFYIFCVRKKYLERSPIPY 332


>gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 328

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----- 116
           +P  +  +L      + +        A  +  ++            +     +T      
Sbjct: 10  APSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTL 69

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   + + +    P S  + L+ +R    + V +     +P + ++ P+      R  ++
Sbjct: 70  RAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSE 129

Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230
            ++              G + R+  E L  +GLR S+     +     +  +I    K  
Sbjct: 130 AEVDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGD 189

Query: 231 TIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFK 274
               V L       L                      +  F  +  +  +    F+    
Sbjct: 190 KERLVPLGLPARAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLG 249

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A +AG++    S H +R   A+     GA    +    G   +   + YT   D  
Sbjct: 250 ELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDR 307


>gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
 gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 89/272 (32%), Gaps = 25/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP-- 130
           +Y       + +  +   + +   ++ R      GD     +  + +R  + S       
Sbjct: 9   DYLLHE--RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMGKGLA 66

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            ++  + L+S+R  +K+ +R+  VA++P   V  PK+K        + +M +        
Sbjct: 67  SNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFG 126

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG--- 240
              EG +  +  E    +G+R S+      + +  +      T K      +   +    
Sbjct: 127 EGFEGCRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGR 186

Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFS 293
              + + +              +K     +         +          +S H +R   
Sbjct: 187 SMREYVNVRNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT   + GA    +    G +++   E YT  
Sbjct: 247 ATAMLNNGADLGSIKELLGHESLATTEVYTHT 278


>gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 361

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 98/303 (32%), Gaps = 37/303 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGV 123
             L++E+ ++      LA NS  ++E      +             D   +    + +  
Sbjct: 62  DQLVTEFLQAMAADRGLAANSIAAYERDLASCLESLSQAGRHFDSCDADDLR--CLLAEW 119

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------E 177
                   S  + L+++R +  W V +     +PC  ++ PK+     +  ++       
Sbjct: 120 TLSGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITALI 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236
              +  +  +E  +     E L  +GLR S+     V   +      I T K G    V 
Sbjct: 180 TAARALAPAAEALRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGKERLVA 239

Query: 237 LPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
           +        A                +     +  ++  QF+   K     AG++    S
Sbjct: 240 MGTPARDATAAWMAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAGIDPRRVS 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H VR   AT   + GA    L    G   +   + YTK             R++ +V +
Sbjct: 300 PHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRP---------DRLAGLVAA 350

Query: 346 DDP 348
             P
Sbjct: 351 AHP 353


>gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
 gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1]
          Length = 316

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 28/304 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107
            A  G+      + + R         +  + +      LA N+  ++        +    
Sbjct: 9   EAGDGTAAPSPALLASRASIDLFCDAL--WLEH----GLARNTLDAYRRDLTLFSQWLAA 62

Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D          +   + +R     +S+ + L+  R  + WAVR+   + +P L +   
Sbjct: 63  THDAALDAADETMLTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRIASA 122

Query: 165 KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K+        ++  ++            G + R   E +  SGLR S+        +  N
Sbjct: 123 KQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 182

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269
              ++          V   +     +                    F+      M   QF
Sbjct: 183 EGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQF 242

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A +A V  + S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 243 WNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 301

Query: 328 RIRL 331
           R RL
Sbjct: 302 RERL 305


>gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37]
 gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37]
          Length = 311

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 33/273 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  +++     +     D      T +           ++   + ++  + L++++ ++
Sbjct: 25  NTLAAYQRDLTHVADWLTDHALDFATAQKKDVESYLIDCDTLGLSRATRARRLSAIKQIY 84

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFL 199
           ++A  +     NP + +  P R+    +  + E + +          +E  + R A    
Sbjct: 85  RFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEADRARNACLMQ 144

Query: 200 --LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT-------- 248
               +G+R ++     V   + +   +    K G    V L     + L           
Sbjct: 145 VLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAWLSARDAAA 204

Query: 249 ---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                          F  +     +    F +  K  A +AGV     + H +R   AT 
Sbjct: 205 SEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPHTLRHAFATH 264

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               GA    +    G   V   E YT   +  
Sbjct: 265 LLANGADLRAIQTLLGHADVATTEIYTHVLEER 297


>gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae]
          Length = 297

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130
           I ++ +       L+  + I+++     ++  + D D     ++ T H+R  V   +   
Sbjct: 5   IDDFLRYLRVERQLSPVTLINYQRQLAVLVDMAIDMDINDWAQLETSHVRMMVAKCRRQG 64

Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             A      L+S+R    W V Q  +  NP  ++  PK K    +    +++ Q  +   
Sbjct: 65  LQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLNIDL 124

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E +  +GLR S+      QHL      ++          V L    ++
Sbjct: 125 ADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERKVPLGRIAVE 184

Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      ++ +              ++++A      F     + GV  +   H +R   
Sbjct: 185 WLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQGVRSHIHPHKLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 245 ATHILESSGDLRAVQELLGHANLSTTQVYTH-LDFQHLA 282


>gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 96/334 (28%), Gaps = 11/334 (3%)

Query: 21  IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F+    R++  +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                     ++   S   +   I    GD     +T +HI    +    +   A + L 
Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161

Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + V+ + A   EY              +    +        K       S         
Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +    L+ +G RC++ C       +   + +   KTG             L     + + 
Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
            F+  +  Q     +   +++       + +   H +R   A+I+         +    G
Sbjct: 282 LFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    YT  A   R   + +  +S ++  +
Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373


>gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 27/280 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSG-DFDYRKITTKHIRSG----VE 124
            ++Y +      L+  +   +    +                  ++ TKH+R       +
Sbjct: 12  FTDYLEIE--RGLSDGTVEGYRRDLNIFTQLMVREFFPQGMILDQLETKHVRRFLVYLKK 69

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
            R +   +  + L S+R  F +   Q YV  NP   ++  K         TK++    + 
Sbjct: 70  ERSNDAGTRNRKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKDESDRLIN 129

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
             +       +       LL +G R  +     +  L      ++          + L D
Sbjct: 130 AARMHNKPPYRDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRIIGKGNKERMIPLTD 189

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289
                LA            ++  F+N   ++++     + F     +AG+NK   + H +
Sbjct: 190 KTCAALAEYLAGRLPEDKNEQAVFLNQRGRRISHRGVQLIFNQTCKEAGLNKERLTVHKL 249

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R    T+  +AG     +    G + +   E Y     R 
Sbjct: 250 RHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQRE 289


>gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP
           105476]
 gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476]
          Length = 322

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 29/273 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH---TP 130
                ++  +  ++E    Q      +  G          +    +R+ +  R+    + 
Sbjct: 34  VKTRRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVSDLRAYLAYRRTNNVSA 93

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183
            S  + +  +R  FK+  R+  V +     ++ PK      +P   +          Q +
Sbjct: 94  RSLSRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPLAIQSALHIVKQENQLE 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241
           +     ++       L   G+R S++     +   +   +    T K      V L    
Sbjct: 154 NEPWINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGRKTRLVPLIKIV 213

Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            + +            +N           +         +      G+    + H +R  
Sbjct: 214 YEAVQNYLKCCPYPLRDNQPLFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHS 273

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT     G     +    G  ++   +TYT  
Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQTYTHV 306


>gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 376

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 95/334 (28%), Gaps = 11/334 (3%)

Query: 21  IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F+    R++  +   ++ T   A + A       R  +        TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102

Query: 80  KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                     ++   S   +   I    GD     +T +HI    +    +   A + L 
Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161

Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + V+ + A   EY              +    +        K       S         
Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +    L+ +G RC++ C       +   + +   KTG             L     + + 
Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
            F+  +  Q         +++       + +   H +R   A+I+         +    G
Sbjct: 282 IFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGRLLG 341

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    YT  A   R   + +  +S ++  +
Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373


>gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20]
 gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20]
          Length = 304

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 28/283 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRS 121
           TT + L  +Y +S      +  +  ++ S  D+ +               + +  +   +
Sbjct: 6   TTEEKLYRDYLQSE--RQYSALTLKAYLSDIDEFVAFLERNGGFQTFKTVQTLDVRVYLN 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  R    +S  + ++S+R+ +++ +   +   NP  +V   K +      + + +MQ 
Sbjct: 64  DLYERHLARTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQV 123

Query: 182 -----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SI 224
                +        +     E L  +G R ++     +  +                  +
Sbjct: 124 LFEIAYDQKDPLWQRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYV 183

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                      +        L          F+N+  Q + A   +        ++ +  
Sbjct: 184 PFGHYAQKAMQQYIAQLRPELVANCPENTVVFVNHRGQPITAAGITYILNTLMNRSTLTG 243

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G   +   + YT  
Sbjct: 244 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 286


>gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA]
 gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA]
          Length = 295

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D II+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis
           E264]
 gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264]
          Length = 333

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 103/326 (31%), Gaps = 28/326 (8%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISE-YRKSAHWGSLAVN 90
           R+P P  ++      +A +   P  E   SP  R   T++       + +      L+ N
Sbjct: 6   RIPAPGPASGGAGRGAAPSADRPADELAASPAWRDSRTSIDLFCDAMWLEH----GLSRN 61

Query: 91  SRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146
           +  ++        +         +       +   + +R     +S+ + L+  R  + W
Sbjct: 62  TLDAYRRDLQLFAQWLAARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRYYGW 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 122 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 181

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 182 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 241

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 242 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQL 301

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKN 335
             G   +   + YT  A      +  
Sbjct: 302 LLGHSDISTTQIYTHVARERLKALHA 327


>gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
 gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT 129
            I  Y         L+ N+ ++++           D    D R+++   +   ++    +
Sbjct: 4   FIERYWDHVRIARGLSRNTLLAYQRDVASFQHYLRDQQVSDVREMSPPLLAGFLDHLHQS 63

Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQF 182
                S  + L ++R LF++  ++  +A NP +S+    R     +  +       ++  
Sbjct: 64  GLASPSRARALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEVTRLLELP 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                E  + R   E L  +G+R S+     V     +  +   T K      V +    
Sbjct: 124 PRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQRVVPIGRPA 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           ++ +                    F++     +    F    +A+A +AG+ +  S H +
Sbjct: 184 IEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIARIPSPHML 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT     GA    + A  G   +   + YT  
Sbjct: 244 RHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHV 279


>gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270]
          Length = 362

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L        T  +    +    M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSKSGGIMTPSLPRKWLLQIIKGIDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12]
 gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 379

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 104/299 (34%), Gaps = 16/299 (5%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYF 99
           + F   Y++       K     +  +K  T++  L + + +       + ++   + +Y 
Sbjct: 67  ADFFDRYVNLAFIDYSKVTDTTNKPEKEKTIRPELPAGFLEKLKQMRYSDHTIRVYTTYI 126

Query: 100 DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
               +     + ++I+   I +     ++ +  +     Q + +++    +   +     
Sbjct: 127 GDFQQYFAGSNLKRISPDEINAYLLHLIDKKNISSCQQNQRINAIK----FYYEKVLGNE 182

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             C  V R KR+       +KE+++ F +   E  +    +  L  +GLR S+       
Sbjct: 183 RHCYKVNRAKREKTLPDVLSKEEVKDFLTVAKEDLRFYCMYSLLYSAGLRISELLNLKPD 242

Query: 216 HLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFS 270
            +  +     ++  K        L   F+  L    I  +      +++   + + +  S
Sbjct: 243 DINISRSLIHVRQGKGKKDRYTLLSKPFINKLEEYRIAYQPEKWLFEREAGVQFSESIVS 302

Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A +AG+ K    H  R   AT   + G     +    G + +   E Y   AD
Sbjct: 303 KKLKEIAHEAGITKRVYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIAD 361


>gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 305

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           I  + +        A N+  S+    +        G         +     + +R    +
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASGAIDGGLAGAAAADIRAYLDDIAARGFAAT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           S  + L+++R  FK+   +     +P  +++ PK+     +  ++ D  +     +    
Sbjct: 67  SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAAIEAG 126

Query: 189 -----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236
                        +     E L  +GLR S+     V   Q +  F +   K      V 
Sbjct: 127 DVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186

Query: 237 LPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
           L       +                   F   +D   ++   F+   K  A +AG+    
Sbjct: 187 LSAKARAAMKTWLAARAKVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H +R   A+     GA    +    G   +   + YT   +          R+  +V
Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRLV 297

Query: 344 DSDDP 348
           +   P
Sbjct: 298 NDHHP 302


>gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 28/281 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            + + ++  ++     Q  +           D   +  +H  + +++  +   +  + L 
Sbjct: 16  KNASPHTIRNYAEDLGQFFQFLEKEGASFPQDLDYLAIRHFLALMQAHGYERRTIARKLA 75

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R   +   R+ Y+A     ++  P+   +  +    +++ +  +        G +   
Sbjct: 76  AIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFLYVDEVFRLLAAPDSQTPAGLRDVA 135

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGK 252
             EFL  SG+R S+     +Q L  N              +          LLA    G+
Sbjct: 136 ILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCERLVHLGRFARRSLLAYLEQGR 195

Query: 253 ETF-------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                           ++N    +++        +    +  + K  S H +R   AT  
Sbjct: 196 PEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVRQVSLAKGISPHSIRHSFATHL 255

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            +AGA    +    G   +   + YT    D+++     + 
Sbjct: 256 LNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAH 296


>gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
 gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC
 gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str.
           Hartford]
          Length = 305

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 28/291 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVE 124
           ++ LI +++K      + +  + IS+ +     +               I    IR    
Sbjct: 6   IQELIDKWQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRS 65

Query: 125 SRK------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     T SS  + L++++  +++  +   +  +   S++ PK+     +  +++D
Sbjct: 66  WLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDD 125

Query: 179 MQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +                  + +     +  SGLR S++      HLQN  F     K   
Sbjct: 126 VVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGSK 185

Query: 232 IITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              +            ++++L       E  F     +K+    F+          G+  
Sbjct: 186 ERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRELIKLKHFYGLPQ 245

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             +AH  R   A+   + GA    +    G K++   + YTK + +    +
Sbjct: 246 HLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAV 296


>gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 29/275 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV----ESRKH 128
            Y  +      +  +  +++   +Q +         FD R +TT+ IR  +    E  K 
Sbjct: 7   RYLSAE--RRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREWIIFRTEEGKL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQF 182
           +  S  + + S+R  F+W  R   V  +    +   K            R  T       
Sbjct: 65  SAGSMNREVASLRAFFRWLHRTGAVEKDIFRMISTLKTSRRLPAFVPESRMTTIVSECGP 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
            S   +  +  L        GLR ++           +  S++ +        V + +  
Sbjct: 125 DSEDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKGDKQRMVPILEFL 184

Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + +       E   I           +  ++++ +      + + T+AGV   KS H +
Sbjct: 185 REKILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTRAGVQGKKSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   + GA   E+    G  ++   + YT 
Sbjct: 245 RHTFATHLLNGGADMREIQELLGHASLQATQVYTH 279


>gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 350

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 27/339 (7%)

Query: 18  HGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            GKI +Y++    G RI    P    F       +          + P     TL+ LI+
Sbjct: 3   SGKIAVYHYAWRGGPRIDAA-PGSPEF-------VAAYNAAHAARDRPVHHDGTLQALIT 54

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPS 131
            Y+K+  +  LA  +R  +  +  QI    GD   + +    +R      +      +  
Sbjct: 55  AYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDRLAQKSKR 114

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA    + +  +  WA  +  + +NPC    R    +     WT+  +  F +       
Sbjct: 115 SADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYAGSRADSIWTEAQIAAFLAAAPR--P 172

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RL F   +++G R +D  +            ++  KTG  + + +       +      
Sbjct: 173 VRLPFLLAIWTGQRQADILQLSWTAYDGKAIRLRQSKTGRHMLIPVAQPLRDAMEEARAR 232

Query: 252 KE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
           +   T    +  Q   +  F   F      AG+   + H +R  + T  A AG +  E+ 
Sbjct: 233 RRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGCSVPEIA 292

Query: 309 ATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342
           A  G  ++  AE      Y  G DR RLG     ++   
Sbjct: 293 ALTGH-SLKDAEGILSKHYL-GRDR-RLGESAVAKLERH 328


>gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
 gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84]
          Length = 311

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 88/284 (30%), Gaps = 30/284 (10%)

Query: 77  EYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            + +       L+ ++  ++E    Q +    G         D + +     R  + +R+
Sbjct: 18  RWLEVLGQERRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDIQALRPADFRGFLAARR 77

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
              + A    + L  +R L ++  ++  V      +V  PK+     +P +         
Sbjct: 78  KDGAGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPKSLPKPLSDTQAITVVS 137

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
              Q        ++       L   GLR S++       ++    +++    G       
Sbjct: 138 DEAQLHEEPWIAARDAAVLTLLYGCGLRISEALDLTPDDIRPGATALRITGKGNKTRLVP 197

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
              +  E  + +  +           F      K++        +   +  G+    + H
Sbjct: 198 LLPVVAEAVERYRAICPYHLDAGSPLFRGARGGKLHPGIIQRGMQKLRSAFGLPDTATPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D+ RL
Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDQSRL 300


>gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
 gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061]
          Length = 305

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 28/279 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127
           L  EY +     + +  +   +    ++ +R        G  +     T+   +    + 
Sbjct: 10  LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+         +E+         
Sbjct: 68  LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + +   E L  +G+R S+ C      L  ++ ++    K      V       
Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187

Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287
           + L                       F+N     +              KA   ++   H
Sbjct: 188 EALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  +
Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286


>gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 376

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 96/334 (28%), Gaps = 11/334 (3%)

Query: 21  IIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F+    R++  +   ++ T   A + A       R  + S      TL     E+ 
Sbjct: 43  YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPSLTLCAFAEEFF 102

Query: 80  KSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                     ++   S   +   I    GD     +T +HI    +    +   A + L 
Sbjct: 103 PRY-ARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP 161

Query: 139 SMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + V+ + A   EY              +    +        K       S         
Sbjct: 162 LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAV 221

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +    L+ +G RC++ C       +   + +   KTG             L     + + 
Sbjct: 222 MVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEH 281

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
            F+  +  Q         +++       + +   H +R   A+I+         +    G
Sbjct: 282 LFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLG 341

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    YT  A   R   + +  +S ++  +
Sbjct: 342 HALPETTLKYTHLA--KRDVQQAANVVSQLIAGE 373


>gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
 gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--- 126
           LI ++ +      + +  +   +     Q        G  + + +  + +R  +      
Sbjct: 8   LIDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDK 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K+   S  + L+++R   K+ + + +++ NP L    PK+KT       +E+M+ +    
Sbjct: 68  KYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLAL 127

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE----- 236
                   + +   E L  +G+R S+     +        +++          V      
Sbjct: 128 PANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMA 187

Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
                         L          F+N     ++        + +  +A +    S H 
Sbjct: 188 VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQKKISPHA 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R   AT   +AGA    +    G +++   + YT  +      +
Sbjct: 248 IRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAV 292


>gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546]
 gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546]
          Length = 342

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 100/324 (30%), Gaps = 29/324 (8%)

Query: 15  RTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + G K +   R    +G+R R     +     AY   +  +   +E++  P  K   L
Sbjct: 3   VKKDGEKWLVDLRPSGRNGKRFR-RKFDKKAEALAYEKHILSTHHNKEWLGLPVDKRR-L 60

Query: 72  KWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127
             LI   + KS         +  ++    + I R+ GD     I    I +      +R 
Sbjct: 61  SELIDIWWIKSGQLK----RTAANYRKKVELICRELGDPTVNNIDATLISNWQLERMARG 116

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              ++  +  + +  +F   +   ++   +P   +++P  +   +   T +  Q    + 
Sbjct: 117 QKANTVRRLTSCLSNVFSVLIETGDFTGAHPLKDLKQPAPEKSEMTYLTLKQTQDLLDYL 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +     E  L +G R  ++      +L          KTG   TV +       + 
Sbjct: 177 KNDWELLKIVEISLATGSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIY 236

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302
               G                   +       K G +       H +R   A+     G 
Sbjct: 237 PENGGNLFSEDP-----------QVRLVRIFDKLGFDLPKGQKVHVLRHTFASHFVMNGG 285

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               L    G  +++Q  TY   A
Sbjct: 286 DILTLKEILGHASINQTMTYAHLA 309


>gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
 gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909]
 gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1]
          Length = 301

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 93/281 (33%), Gaps = 25/281 (8%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR 126
             I +Y     +    + ++ +++E    +           +        +   +   + 
Sbjct: 3   EWILKYMDYLKYEKRYSEHTLLNYERDVKEWFSFCQREGINEFEFDYSDVRSYLNDCYTH 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182
           + + S+  + L+S+R  +++ ++++ V  NP L ++ PK+     +   +E+        
Sbjct: 63  QLSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDSI 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKT 229
                 G +     E L  +G+R S+ C+     L               + +    +  
Sbjct: 123 DQTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYVPIGEFA 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAH 287
              I   L     +LL  + +  +  F+N+    +                   +  + H
Sbjct: 183 VEAIEAYLQRSRPQLLKKSNLETDVLFLNHLGTPLTERGVRDILSRMTNQTAKHIKVAPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   AT   + GA    +    G + +   + YT  +  
Sbjct: 243 MIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKE 283


>gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 353

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 109/354 (30%), Gaps = 46/354 (12%)

Query: 17  RHGKII---YYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK     +Y+R   G   +              Y         +   + +      T 
Sbjct: 5   KDGKTWRAVFYYRDYTGTNIQTTKRGFATKREALDY--------EREFIMKATFNNRMTF 56

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---- 126
           + L   Y +      L  ++ ++ +   + +I+          IT   +R    +     
Sbjct: 57  QSLYELYMEDMTHR-LRKHTMMTKKKIIEDKILPFFSKLKLDSITPVKVRQWQNTLISGV 115

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
                 ++P+        +  +F +AV+   +  NPC       +K  E +  WT E+ +
Sbjct: 116 SIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTPEEFE 175

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           +F  F        + F  L ++G+R  +     ++ +     +I   K+           
Sbjct: 176 KFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGEDVIT 235

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                     V +PD  ++LL                       F    +  + KAG+ K
Sbjct: 236 APKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLFPYTKHLFENDLRIYSEKAGLKK 295

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---GADRIRLGI 333
              H +R   A+   + G     +    G + ++     Y      AD   L I
Sbjct: 296 IRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEKLLKI 349


>gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2]
          Length = 310

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 23/278 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140
            LA  +  ++                          + + +  R      ++A + LT  
Sbjct: 33  GLAPLTLAAYRRDLTLYAGWLARRHAKRLDDSREADLLAYIAERHTATRATTANRRLTVF 92

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196
           +  F+WA+R+  VA +P L ++  ++     +  ++  ++   +        G + R   
Sbjct: 93  KRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQVEALLAAPETDTALGLRDRAML 152

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------- 248
           E +  SGLR S+       HL      ++          V   +     L          
Sbjct: 153 ELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIVPFGEEAHGWLQRYLGEARAA 212

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F+      M    F +  K  A  AG+    S H +R   AT   + GA 
Sbjct: 213 ILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVPLSPHTLRHAFATHLLNHGAD 272

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              +    G   +     YT  A R RL   ++R    
Sbjct: 273 LRAVQMLLGHADIGTTTIYTHVA-RERLRQLHARHHPR 309


>gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 311

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 33/290 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VES 125
           +  IS + ++       A N+R+++                 +       + +     ++
Sbjct: 7   ERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADRAAVEAYLVFCDA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  +P++  + L+S+R L+++A  + + A NP + +  P R     +    E++ +    
Sbjct: 67  QGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVDRLLDA 126

Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +  +        R   E L  +G+R S+     V   + N   I    K G    V L
Sbjct: 127 ARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKERMVPL 186

Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                + LA                     +  F  +     +    F +  K  A  AG
Sbjct: 187 SPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQIAVLAG 246

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           V+    + H +R   AT     GA    +    G   +   E YT   D 
Sbjct: 247 VDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDE 296


>gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens
           FD-1]
          Length = 327

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 103/304 (33%), Gaps = 42/304 (13%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------------SGDFDYR 112
             ++EY         L+  +   +       +R                      + D R
Sbjct: 11  EFLNEYLVHIKLVQLLSERTIQGYYEDIRLFLRFIYMNSHNIDDSPENIDISDFPEDDLR 70

Query: 113 KITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
           KIT   I + +    + R +   +  + ++S+R  FK+  +    +  +P   ++ P  K
Sbjct: 71  KITVSDIYNFIFYVSDERHNNDKARYRKISSLRSFFKYLEKAAHIIEKDPTKDLDVPVPK 130

Query: 168 TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               +  +  +  +       ++  +        L  G+R S+     +  +      ++
Sbjct: 131 KSLPKFLSLNESMRLLQASDNADSKRDYCIITLFLNCGIRLSELVGINISDIDFYENRMR 190

Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKA 275
              K      + L +  +  L    I +            FI+N  ++++  +     + 
Sbjct: 191 VLGKGNKERMIYLNEACVDALNKYLIIRRDNQKAKAELALFISNQNKRISKRRVQQIVEN 250

Query: 276 KATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330
             T AG++    + H +R  +AT+    G A    L    G  +V   E YT  ++  +R
Sbjct: 251 TLTAAGLDGKGITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENVR 310

Query: 331 LGIK 334
             I+
Sbjct: 311 SAIE 314


>gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
 gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM
           20098]
          Length = 324

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 88/288 (30%), Gaps = 38/288 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS 132
           ++         L+  +  ++ S  D+        G  +   I+  H+   +       +S
Sbjct: 21  QFIAHIDVERGLSKATVTAYTSDLDRYCVWLREAGITEPASISRNHVEEYIAHLDSHGAS 80

Query: 133 AI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------------ 177
           A    + L S+    ++A+ Q  VA +   +V+ PK  +      T +            
Sbjct: 81  ARSKARNLASIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDCAPVP 140

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGT 231
                     +   + +   EF+  +G R S++    +  +  N    +     +++   
Sbjct: 141 APGCVMDVPHAVLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGKGSKQRLV 200

Query: 232 IITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKA 280
            +         + L       E             F+N   Q+M+             +A
Sbjct: 201 PVGEYACAAMTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVVNQAGKRA 260

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +      H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 261 HIGKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVS 308


>gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 326

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 20/291 (6%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFD 110
                   + +  +   + +     + K+     L   +   +++    ++R    G   
Sbjct: 16  EELDVLGELEAAEEYIESWEEAFGLFHKAGILKGLREATLFHYQAQLKSLLRALPVGIKP 75

Query: 111 YRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           Y ++T +HI          R   PS+    + + +  FK+    +++ INP   +++ K 
Sbjct: 76  Y-EVTKEHIEDAIVFCKVKRNLQPSTINIVIRANKTFFKFLFENKHIPINPIKDIKKLKA 134

Query: 167 KTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + + +   T + ++            G +       L+ +GLR ++     V  +     
Sbjct: 135 RAKEVEVLTPKQLKTLLSKVDRKTWNGIRDYAILLVLIETGLRQNEILNLSVLDVVWEQD 194

Query: 223 S--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKA 275
              +K  KT     V + D     L    + +   +       ++               
Sbjct: 195 LLLVKHTKTYHQRKVPITDNTKNALKRWLLIRGEVYTKRLFCGISGKALTNSGLRQMIYK 254

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  A +    S H  R   A+I    G     L    G   +     YT 
Sbjct: 255 YAKLANIQSRCSPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTH 305


>gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302]
 gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302]
          Length = 293

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
           I ++     +  + +  +  ++        +   D      +  + +  +R+ +E     
Sbjct: 3   IDKFLDYLRFERNRSELTVKNYGDDLRSFEKFFRDLENPVSWESVDSDVVRNWMERMMDE 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               +S  + L+++R  +++A+ ++ V  +P   +  PK+     +   +++M +     
Sbjct: 63  GNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLERK 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             +   E  + R        +G+R S+      + +    +    T K      +   + 
Sbjct: 123 CWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGEE 182

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
               L      ++          F+ ++ Q+M+A+      K   +K      +S H +R
Sbjct: 183 LCTTLRDYMECRDREVDRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLNKRSPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 243 HTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
 gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 89/275 (32%), Gaps = 30/275 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---K 127
             +Y       + +  + +++                +    +++   IRS + S    +
Sbjct: 8   FQDYL--LKEKNYSPLTALAYGKDLQFFQTFLEIKFDNTPLEEVSYTLIRSWIVSMVDAE 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182
            + +S  + + S++  +K+ ++ + + INP    +  K   +   P+++ +      Q  
Sbjct: 66  MSNTSVNRKIASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAELDTVLTQIQ 125

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT------- 234
                EG + +L  +    +G+R S+     + +            K             
Sbjct: 126 YKAGFEGMRDKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVI 185

Query: 235 ------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                        + L+            N   +       + +F   + K  V KS H 
Sbjct: 186 IKQIKVYLAERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEK--VKKSPHM 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT   + GA  + +    G  ++   + YT
Sbjct: 244 LRHTFATHMLNHGADLNSIKELLGHSSLASTQVYT 278


>gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c]
 gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 104/276 (37%), Gaps = 17/276 (6%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +  +L+ L+ +Y     +  +LA  S  +++     I +      + ++T  H+R  + 
Sbjct: 2   SEQPSLQPLLGKYFDYLKYERNLAAKSIENYQRQLASICQALTITAWPELTVDHVRQVLN 61

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KED 178
               +  +P S    L+++R    + V  E ++ NP  +V+ PK+ +   +         
Sbjct: 62  QARRQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLNVDEMHQ 121

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  F      G + +   E     GLR ++     ++ LQ++       K      + + 
Sbjct: 122 LLDFDDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDDGQLRVIGKGSKERILPVG 181

Query: 239 DGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
              +K L              +   F++  +++++  Q +   +  A +  +++  + H 
Sbjct: 182 KTALKCLGEWLKVRGVLADGDEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHK 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT   ++      +    G   +   + YT 
Sbjct: 242 LRHSFATHILESSGDLRGVQELLGHANLSTTQVYTH 277


>gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
 gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202]
          Length = 300

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 21/285 (7%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIR 120
             TL   I  Y         ++ ++  +++     +                    + I 
Sbjct: 2   DNTLYAQIQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQHQISSWQEVDASVIRWIL 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           S    +     S    L ++R  F + V+ E +  NP L ++ PK      +    E + 
Sbjct: 62  SQSHKQGLGAKSIGVRLVALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVA 121

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
           Q  +         +     E +  SGLR S+     +  +      ++   K      V 
Sbjct: 122 QLLNTEVTTPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKERIVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAH 287
           +    ++ +      + +F   ++         +++     +  +    K G+  +   H
Sbjct: 182 IGSKALEAIHRWLEVRMSFNPQDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   AT   +       +    G  ++   + YT   D   L 
Sbjct: 242 KLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTH-LDFQHLA 285


>gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX]
 gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX]
          Length = 321

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 95/312 (30%), Gaps = 40/312 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI------- 119
           L   +  Y         LA N+  S+    ++ +      G  D R +    +       
Sbjct: 8   LHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTL 67

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  R    +SA + + ++R L ++A+R+   A +P   V  P  +    +  T   
Sbjct: 68  REGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQ 127

Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           ++   +    G      + R   E L  +G R S+     V  +               +
Sbjct: 128 VEALLAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEVAAV 187

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------------NATQFSIW 272
                 G  +++ +    +        + +                              
Sbjct: 188 RFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGAWAV 247

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
             A A +AG+ + S H +R   AT   D GA    +    G  +V   + YT    DR+R
Sbjct: 248 LHAAAERAGLRDVSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 307

Query: 331 LGIKNSRRISSV 342
                +   + V
Sbjct: 308 EVYAAAHPRARV 319


>gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 393

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 120/368 (32%), Gaps = 40/368 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46
            L+ P  + +++   G I  Y   ++KG  ++  L          A              
Sbjct: 9   RLKEPVRIREKKIAGGNISLYLDIYQKGLRKKETLKLYLVPEINAATKLQNANTRKLAEQ 68

Query: 47  --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103
                 L          +  +K   TL   + ++ K  A     ++ ++ +  +  DQ +
Sbjct: 69  IKAQRILDIQREGLVDWDKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYL 128

Query: 104 RKSGD--FDYRKITTKHIR----------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              G   F  + +  +  +               ++ + ++   F+         AVR  
Sbjct: 129 LHIGKPEFLLKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAVRDG 188

Query: 152 YVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +  NP     + E+P+++       T E++++  +        + AF F  ++GLR SD
Sbjct: 189 LIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSD 248

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINNDKQKMN 265
                   +               +  +         +     P  +E          + 
Sbjct: 249 MKALNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLTIT 308

Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +T   +  K     AG+ K    H  R  +AT+    GA+ + +    G K++   E Y 
Sbjct: 309 STTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYA 368

Query: 324 KGADRIRL 331
           K  D+ +L
Sbjct: 369 KIVDKKKL 376


>gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
 gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522]
          Length = 297

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 89/286 (31%), Gaps = 26/286 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126
           +  LI ++         A N + +++++        +          ++   IR  +   
Sbjct: 2   VSELIKQFITYLQLEKQASNHTTLNYKNDILDFYAFTKSLKISTFVDVSYNDIRDYLTVL 61

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                S     + ++++R  + + +R+E V  NP  SV  PK        + +E+     
Sbjct: 62  HQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFFFEEELAKLF 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELP 238
               +    G +     E L  +G+R S+      + +  +        K      V + 
Sbjct: 122 DSTDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRGKGKKERYVPVG 181

Query: 239 DGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              M+ L                     F+N    +++              A      S
Sbjct: 182 SFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNIVRDASTASRIS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
            H +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 242 PHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLR 287


>gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
 gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a]
 gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b]
          Length = 368

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTVKTYRAYFSDFMEYHEGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++    +  + +         + R K         +K ++++         +  
Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
                +  +GLR S+      Q + +   S++            L    ++ L       
Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271

Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306
                        ++ +A+      K  A +AG+    H   +R   AT   + G   H 
Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G   +     Y   +   +
Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355


>gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
 gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155]
          Length = 318

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 42/301 (13%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128
           +Y K+    + +++++ ++     + I +  GD         +++I     +  + S + 
Sbjct: 15  KYLKTE--KNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQE 72

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175
           +  S    L   +S+R L+ +  R+E  + NP   ++  K+        +          
Sbjct: 73  SKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSS 132

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                  ++ K+     S+     E +   GLR  ++       +     ++K    G  
Sbjct: 133 PAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKK 192

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                        +           L  T      F    D ++++A       KA    
Sbjct: 193 QRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQS 252

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
             +    + H +R   AT   DAGA    +    G + +   + YT    DR+      +
Sbjct: 253 CQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQA 312

Query: 337 R 337
            
Sbjct: 313 H 313


>gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 399

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 12/319 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRKKPTTLKWLI 75
           + GK  Y F     R  R  +  +   + A     T    P    +         L+  I
Sbjct: 61  KTGKWKYKFEFQKKRYKREGFKTQKEALLAEAGKRTLVNAPSLGLMELEEPPSGYLEETI 120

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAI 134
             Y K      +  N+           ++  GD     I    I + +E R  +  S+  
Sbjct: 121 LNYLKYCKKRKMRSNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFN 180

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + L  +R +F W   +E +  NP   +E+     E        D+   K   +      L
Sbjct: 181 RDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIVAVKLMATRDEGDFL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------T 248
             E + Y+GLR  ++ R        +  S                   K +         
Sbjct: 241 --ETIFYAGLRRIEAIRLLWSR-DVDFESRTLISWTRKRKNGTLTPKPKAITKTLYTALK 297

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
              +    +++   + +    +   K    KAGV +   H +R   A+I          +
Sbjct: 298 NRYERRNKLDDRVFQFSVEYLNDMMKRLCEKAGVQHFGLHALRHLGASILLSENVPLPAV 357

Query: 308 MATYGWKTVDQAETYTKGA 326
               G + +    TY    
Sbjct: 358 QEYLGHERITTTNTYAHTL 376


>gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC
 gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 305

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 89/286 (31%), Gaps = 34/286 (11%)

Query: 73  WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHT 129
            +   Y   SA        +  S+++          + D    ++    IR  +      
Sbjct: 3   EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELDLNIFELKASDIRIFIAELADK 62

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S  + ++++R  +K+A+R     +NP  SV   K   +       +  Q+F    
Sbjct: 63  KIAPASINRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCRLP 122

Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240
           S       ++    F  L  +G R S+     ++ L     ++I   K      V   + 
Sbjct: 123 SNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEF 182

Query: 241 FMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             + L                          ++T FIN   Q + +             +
Sbjct: 183 AKEYLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGIRYIIDRYVELS 242

Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + S H  R   A+     GA    +    G ++V   + YT 
Sbjct: 243 PELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288


>gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 307

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 28/280 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           LK+ I ++ +   + +L+  S   ++    +        G  + + IT  HI+S     K
Sbjct: 3   LKFAIQDFIEDRKFKNLSPVSINGYQRDLQEFYNWITQQGILNIQDITPHHIKSYFMHLK 62

Query: 128 HT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK 176
           +     P +    LT++R  F + V+++ +   P    ++               +    
Sbjct: 63  NEKNNNPVTLNHKLTNLRAFFNYMVQEKILKETPVKIEKQKTDVKIEAFTDEQVYQMLRY 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
               + +       +  L     L +G+R S+      + +   N       K+    T+
Sbjct: 123 FRKLKQREKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITVYGKSRKQRTI 182

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG---V 282
            L +   +         +   IN                +     + F+      G   V
Sbjct: 183 PLQERLREEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGWKNV 242

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + H  R   A     +G     L    G ++++    Y
Sbjct: 243 KLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRY 282


>gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           HaA2]
 gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2]
          Length = 351

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 90/314 (28%), Gaps = 35/314 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109
           +  S P    I+ P      L    + +         L+  +  ++     Q +      
Sbjct: 29  MAKSQPMPPPIDLPCAAAD-LNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGH 87

Query: 110 --------DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                    + ++ T  +R+ + +R+       S ++ L  +R   ++  R+   ++   
Sbjct: 88  WGGEVTLGRFARLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGAL 147

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDS 209
            +V  PK K    +P      ++         + R              L  SGLR S++
Sbjct: 148 SAVRAPKIKKSLPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEA 207

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262
                + +            G      +      +LA      +                
Sbjct: 208 LGLKRRDVPAPGKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPLPPDGPMFVGA 267

Query: 263 ---KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               ++     +  +      G+    + H +R   AT     G     +    G  ++ 
Sbjct: 268 RGGPLSPRIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLS 327

Query: 318 QAETYTKGADRIRL 331
             + YT G D  RL
Sbjct: 328 TTQIYT-GIDTERL 340


>gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti
           MAFF303099]
 gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD
 gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
          Length = 305

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 89/305 (29%), Gaps = 40/305 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           I  + +        A N+  S+    +        G         +     +  R   P+
Sbjct: 7   IEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADIRAYLDDIAERGFAPT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------ 185
           S  + L+++R  FK+   +     +P  +++ PK+     +  ++ +  +          
Sbjct: 67  SQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLIDRAAVEAG 126

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKT 226
                        +     E L  +GLR S+     V   Q +              +  
Sbjct: 127 DAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
                 + +         +         F   +D   ++   F+   K  A +AG+    
Sbjct: 187 LSAKARVAMRAWLAARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H +R   A+     GA    +    G   +   + YT   +          R+  +V
Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEE---------RLVRLV 297

Query: 344 DSDDP 348
           +   P
Sbjct: 298 NDHHP 302


>gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155]
 gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155]
          Length = 306

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
              Y  +     L+ ++  ++    ++      D     +  +   + + + +  +  +P
Sbjct: 19  FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVNLLNVSREHWQQVLAKLHRKGLSP 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  + +NP   +  PK+     +    + +           
Sbjct: 77  RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q ++  ++   K      V +    +  L 
Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  V    H +R   AT  
Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +A A    +    G   +   + YT   D   L 
Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290


>gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20]
 gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20]
          Length = 299

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 98/280 (35%), Gaps = 26/280 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124
             L  E+ +        +  ++ +++   +     +++SG+ D   +  + +R   S + 
Sbjct: 4   DQLQEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R+++ +S  + + S+R  +++  + E V  NP   +   K+  +  R + +++M     
Sbjct: 64  ERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQ 227
                     + +   E L  SGLR S+     +  +               + +     
Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
                +   L  G  +L+       E  F+N+    + AT           K+ ++    
Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + Y   
Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 283


>gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
 gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis
           1221n]
          Length = 321

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 32/288 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K ++ E++ S      +  +  ++ S     +   GD   R +T + I +    R     
Sbjct: 7   KEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDR-LRNG 65

Query: 132 SAIQFLT--------------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              + ++               ++  F+W      V          P RK         +
Sbjct: 66  FPNRKISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVT---------PVRKPHASINVLSD 116

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITV 235
           +  +     +     +L    L+ +GLR  +     V+ +  +   IK    K G    V
Sbjct: 117 EEVEKLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYV 176

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
              +   K+L            +     +  +      K  AT+AG+       H +R  
Sbjct: 177 VATEETFKMLDAWIRLNGLMPGDRLFN-LTYSGLYKKLKRLATRAGIAPERVRPHVLRHT 235

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
            AT +   G +   L    G   +   + Y      D  +   +   +
Sbjct: 236 FATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDK 283


>gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
 gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD
 gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS]
          Length = 304

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
            +  +  +        + + N+R S+ +   + +    +      +     IR  ++   
Sbjct: 8   WRKTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELH 67

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + ++++R   K+ + +    +NP  ++ +PK         T E+M     
Sbjct: 68  EIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLD 127

Query: 185 FWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----I 232
              +         + +   EFL  +G+R S+       +L  +   ++    G+      
Sbjct: 128 APLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVP 187

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK-- 284
           +         + L     G  +   ++          ++        +  A  AG+ K  
Sbjct: 188 VGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPI 247

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H  R   AT   + GA    +    G  ++   + YT 
Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTH 287


>gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
 gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2]
          Length = 297

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 23/264 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
            + + ++   +E             G  D R++   H R+ V      K + ++  + ++
Sbjct: 18  KNYSEHTVHHYEHDLADFFLFLNAEGVPDIREVEYIHARNYVTKLYDAKLSRTTVSRKIS 77

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194
           ++R  F++A R+  +      S+  PK++    + + +E+     +          +   
Sbjct: 78  AIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLFKSVLGDDKLSIRNTA 137

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             E L  +G+R S+     +  L   +       K      +         L        
Sbjct: 138 LLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKERYIPYGQFAQDALEHYLEDAR 197

Query: 254 TFFINNDKQKM----------NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
              +                               KA VN S   H +R   AT   + G
Sbjct: 198 PKLMKKQDHDYLFVNSRGEAVTDRGIRHILSECMKKASVNSSIYPHMIRHTFATHLINNG 257

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
           A    +    G   +   + YT  
Sbjct: 258 ADIRTVQELLGHSHLSSTQVYTHV 281


>gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
 gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 99/292 (33%), Gaps = 28/292 (9%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTP 130
           LI +Y      +   +  +  ++  + +   R +       +    + +R+ +   +   
Sbjct: 11  LIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPSTRDVRAYLSELRAAG 70

Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +A      L+S+R  F+W   +     +P  ++  PK           + + +      
Sbjct: 71  YAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLAPDQLARLMDAPD 130

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238
                G +     E  + +G R S+     +  +  +  S++    G+      +     
Sbjct: 131 LASAGGKRDAAMLELFIATGARISELAALDLADVDVSRASVRLFGKGSKERLVPLYDRAC 190

Query: 239 DGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
               + L                + +FFI++  + M+A+     F A   +AG+    + 
Sbjct: 191 SVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRHRFDALKRRAGIPADITP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           H +R   AT     GA    +    G  ++   + YT    DR++  +  + 
Sbjct: 251 HAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAH 302


>gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1]
 gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1]
 gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 95/265 (35%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L     +     +LA N++ ++        R   D    ++  + +R+      ++RK T
Sbjct: 21  LRQRMLEDMGVRNLAPNTQSAYLKQVSAYARYF-DCSPDELGPEQVRAYQVYLTQTRKLT 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+      ++R L+K  +++ +        +  PKR  +     ++E++ QF     + 
Sbjct: 80  PSTVSVATGALRFLYKVTLKRAW----AVEEIPMPKRSFKLPVVLSREEVSQFL-ASVDH 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAM 247
              R        +GLR S++    V  + +    ++  +        V L    ++ L +
Sbjct: 135 LMHRTILMTAYAAGLRVSEATHLKVSDIDSQRMVLRVDQGKGRKDRYVMLSPRLLEALRV 194

Query: 248 TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F  +   Q +      +  +      G+ K  + H +R   AT   ++G
Sbjct: 195 YWKSARPTLWLFPGDVPGQPITRNAVGLACQKARRACGIRKPITPHSLRHAFATHLLESG 254

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y K A
Sbjct: 255 TDVRTIQLLLGHRSLATTSRYLKVA 279


>gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM
           10152]
 gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 316

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 43/292 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           I  Y          A N+  ++     +        G     ++    + +   + +   
Sbjct: 6   IDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVALRSGG 65

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   SS  + L ++R L ++A  +   + +   +V+ P       +    + + + 
Sbjct: 66  GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPYDQVLRL 125

Query: 183 KSFW----------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
                                 G + R   E L  +G R S+     V  L     ++  
Sbjct: 126 LEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTTERAVVL 185

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWF 273
             K G    V +    +  +    +                 F+N    +++        
Sbjct: 186 RGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQSAWQVL 245

Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 246 QTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 297


>gi|167628193|ref|YP_001678692.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
 gi|167590933|gb|ABZ82681.1| phage integrase family protein [Heliobacterium modesticaldum Ice1]
          Length = 368

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 107/366 (29%), Gaps = 41/366 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+  R       FR        R+ +     + +    Y         +         
Sbjct: 3   VYKDEKRK-TWYCAFRYKDWTGTTRQHKKRGFAKKSDAVQY--------ERDFIKKQSGG 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
                  ++  Y +      L   +    +   D +I+    D     IT   +R     
Sbjct: 54  CDMAFGSMVELYMEDCKTR-LRPTTYEGKKYLIDSKILPVFKDMPVNAITPATVRKWQNG 112

Query: 126 R-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
                  ++P+        +  +F +A R   +  NP        +K    ++ WT ++ 
Sbjct: 113 LLDDESDYSPTYLKTINNQLSAIFNYARRYYGLQTNPAAVCGSIGKKNAESMQFWTTDEF 172

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFS 223
           + F +  S+       F  L ++G+R  +                        + N    
Sbjct: 173 RLFAAAISDKPASYAIFNTLFWTGMRSGELLALTLNDIDFESKKISITKSYARVGNEDVI 232

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              +   +   +   +  +++L         +  ++          +         +GV 
Sbjct: 233 SPPKTPKSRRVITASEFLLEILKDYAGRLVDYEPSDRLFDYTKHFLASEMARGCKLSGVK 292

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
           K   H +R   A++  + G +   +    G ++V+   +TY           + + ++ +
Sbjct: 293 KIRIHDIRHSHASLLIELGFSPLLISERLGHESVETTLQTYAHLYPNKH--GEVADKLDA 350

Query: 342 VVDSDD 347
           +   ++
Sbjct: 351 LNSPEN 356


>gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           EO147]
          Length = 325

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133
           + +      L+ N+  ++        +         +   +                +S+
Sbjct: 45  WLEH----GLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSS 100

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 101 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 160

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 161 LRDRTMLELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 220

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 221 LRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 280

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 281 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 314


>gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 290

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 78/265 (29%), Gaps = 17/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L   + +      L   ++  +           G       T + +R+     K     A
Sbjct: 9   LRRRFIEDMRIKGLQPKTQTMYLRAMRDFTGFLGHSP-DSATPEELRAFQLDMKEKGVGA 67

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189
                 LT +   +     +  +  +        +   +     + E++ +        G
Sbjct: 68  PTFNNRLTVLSFFYATTCPRPEMKRHM----RYQRAAKKIPVVLSAEEVTRILEAAPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAM 247
            + R AF      GLR S+     +  + ++   I+  +        V L    + LL  
Sbjct: 124 LRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRKDRHVMLSPSLLVLLRD 183

Query: 248 TPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                      F   N    ++  QF+  F      A + K  S H +R   AT   + G
Sbjct: 184 YYREARPAGWLFPGRNRVDPISTRQFNRAFGVACDFAEIKKRVSPHTLRHSFATHLLEGG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G   ++    YTK A
Sbjct: 244 TDIRVIQVLLGHAKLETTTIYTKVA 268


>gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232]
 gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232]
          Length = 362

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L        T  +    +    M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
 gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V + Q + +                        
Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M         K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALTAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT-SLDFQHLA 292


>gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 328

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 89/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T  + ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLNESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L       +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12]
          Length = 336

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 48/303 (15%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           TL+ L ++Y   A     LA  + +++    D +++++      +I + HIR        
Sbjct: 13  TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAETLGAAQIESVHIRRWAAQLHA 72

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------- 175
              +P +    L++ R  F+W  R  +VA NP   V  PK      +  +          
Sbjct: 73  GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 132

Query: 176 -----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQH 216
                           Q + F +  ++     E L   GLR S+           A    
Sbjct: 133 SPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 192

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQK 263
             +   +  T K     +V +    +  L      +      +                +
Sbjct: 193 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGAR 252

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +   +  +  +  A  AG++     H +R   A+    +      +    G  ++   + 
Sbjct: 253 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 312

Query: 322 YTK 324
           YT+
Sbjct: 313 YTR 315


>gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4]
 gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 383

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 115/372 (30%), Gaps = 39/372 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46
             + P  +  +  ++G    Y   +R G      L         PA              
Sbjct: 9   KAKEPVRIRFKELQNGNKSIYLDIYRNGKRTYEFLKLYIVPEIDPASRAMNQHNMALANK 68

Query: 47  --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 +  +  ++   N+  +    L  L+  Y +         +S     S      +
Sbjct: 69  IKADRIIELTNSEKGVSNATLRGRIKLSELLDLYARWLEDNG-KKSSIRGVNSIRKATFQ 127

Query: 105 KSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVA 154
             GD   R +   +  + +   ++          + ++A  ++T +  +  WAVR +Y++
Sbjct: 128 FRGDVPIRMLDKDYCMAFMNFLRNDYKARTNRTISMTTATGYVTVLSAMLNWAVRNDYLS 187

Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSC 210
            NP   +       + E  R + + D  +        ++P  + AF F  Y  LR SD  
Sbjct: 188 ENPFTHIAAADRIHRPESKREFLQIDELKKLIATECPTRPAVKQAFLFSCYCALRISDVI 247

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +  +    +           +      + +   P   +    +      + ++ 
Sbjct: 248 GLTWGDIHKDGDQWRVFTVMEKTNDPIYLPLSKQAMKWLPERGDAKDEDKVFDLPSESRI 307

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            I     A  AG+NK    H  R   AT+        +      G K +   + Y K  D
Sbjct: 308 CIILDKWAKAAGINKHVTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIID 367

Query: 328 RIRLGIKNSRRI 339
           + +   +   R+
Sbjct: 368 QKK--DEAVNRV 377


>gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 374

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 42/352 (11%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K  +    G     G+R +       T   A   A      +    +    K  T
Sbjct: 6   RKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           L   + E+ ++     +  ++ I++    + +II   G    + +   H +  V+S    
Sbjct: 65  LSEYLQEWLENTAKQRVRDSTFINYRRAVNSRIIPVVGSHKLKDLKPLHGQRFVKSLIDE 124

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185
             +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F    
Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKIFLTYA 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228
             +       F   L +G+R  +      +++                     F+     
Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLIDGKVSVTETLIYDELGFRFTEPKTS 244

Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +         +              +       +  F   D + +     +  F+ 
Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGKPIYPRTLTTVFER 304

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               A V K   H +R   AT+    G     +    G  ++    +TY+  
Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHV 356


>gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
 gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374]
          Length = 310

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 83/298 (27%), Gaps = 35/298 (11%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVE 124
            +  EY         L+ ++  ++                   D     I +  +     
Sbjct: 4   QVFEEYCDYIRNVKGLSAHTEKAYRHDLFVFGEFLEKFSISVHDVSPSDIRSFLVWLPER 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  +P +  +  +++   + + VR+  +  NP   +              K + ++  +
Sbjct: 64  RKDFSPGTVQRLKSTINGFYTYVVRRGKIEKNPVALISLRSASRRLPTVLEKSETERLLN 123

Query: 185 FWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                    +  L    L  +G R S+     V  L+     I    K G    V L   
Sbjct: 124 LPWNDFSSLRDVLILNLLYSTGCRRSELLAIDVDDLETGQERILIHGKGGRERYVFLTPR 183

Query: 241 FMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             KLL                                    ++++    +  F     + 
Sbjct: 184 VTKLLGKYLSERKELLSRLEPAEKEGADWNALLLSNGRRKGKRLSTGIITSIFGKYKREL 243

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
            ++K  + H +R   AT   D  A    +    G   +   + YT   A+R+R     
Sbjct: 244 EIHKAFTPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDA 301


>gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 90/300 (30%), Gaps = 33/300 (11%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----------IRKSGDFDYR 112
            K   ++  + ++Y +   +    + N+  ++                      G     
Sbjct: 3   TKPEPSISEVFAQYERHLRFERGRSPNTVRAYLGDLRAYFGPARDETAPARDVLGAVTIA 62

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +      S + +   + ++  +  + M+  F+WAVR    A +P + +  PK +     
Sbjct: 63  DLR--GWLSEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPH 120

Query: 173 PWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIK 225
              K+  +Q  +     S      + +L  E L  +G+R  + C   V  +      +  
Sbjct: 121 VLRKDQAEQALTSAPAPSDGALLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATV 180

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFK 274
             K      V         ++                               T   +  +
Sbjct: 181 LGKGDKQRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHE 240

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A + G+     HG+R  +AT   + GA    +    G  ++   + YT  +      +
Sbjct: 241 RVAREPGLPDLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAV 300


>gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC
 gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23]
 gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99]
          Length = 300

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 27/284 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120
           +   L+    +Y  S    + +VN+  ++E+      R   +           +  +   
Sbjct: 3   QEGKLEQQFLDYLHSE--RNYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + ++ +  + ++  + ++S+R  + + +R+  +A NP   V   K +    + +  E+M+
Sbjct: 61  TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIIT 234
                  E       + R+  E L  +G+R S+           +    +   K      
Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180

Query: 235 VELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAGV- 282
           V         +      +                N+    +             +KA + 
Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHV 284


>gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 300

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 89/293 (30%), Gaps = 27/293 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ +          A N+  ++        +  GD           R G       P+
Sbjct: 9   EAVTAFLAMLSAERGAAANTLAAYRRDLAGAAQVLGDLALAD-RGALARLGEVWADLAPA 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           S  +  +++R  + + V +     +P  ++ R + +    R     ++    S       
Sbjct: 68  SLARKASALRQFYAFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGALFSLAEADAA 127

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELP 238
                  +     E L  SGLR ++     +  +  +   +       Q+    +     
Sbjct: 128 EGDPAALRLLALVELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQRLVPVGERAG 187

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                 L + P G    F +     +   +     +  A +AG++    S H +R   AT
Sbjct: 188 AALRDWLRVRPAGGRYVFPSPRGGHLTRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFAT 247

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              + GA    L    G   +   + YT              R+ S+V+   P
Sbjct: 248 HLLEGGADLRVLQTLLGHADIATTQIYTHVDG---------ARLVSLVNQRHP 291


>gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto
           Rico]
          Length = 312

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 82/272 (30%), Gaps = 30/272 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130
                 + N+  ++E       R                +++ +   RS +  R      
Sbjct: 18  REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 77

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            +S  + ++ +R  F++   +  +  +   ++ +P  +    +   +  M++        
Sbjct: 78  SASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDL 137

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +       L   GLR S++       L+ +       K      + +      ++
Sbjct: 138 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 196

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                      ++               +++ T F+   K    + G+ ++   H +R  
Sbjct: 197 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 256

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G  ++   + YT 
Sbjct: 257 FATHLFLEGADIRVVQELLGHASLATTQVYTH 288


>gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CNPAF512]
          Length = 317

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D I                       + + S+  
Sbjct: 9   VESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLASQGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L +MR  +K+   +     +P   ++ PK+     +    E++ +  S    
Sbjct: 69  KPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 128

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            +                 E L  +G+R S+        L       +   K      V 
Sbjct: 129 EADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPAGVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282
           L    +K L               + + +                 F+   K  A +AG+
Sbjct: 189 LSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM
           16994]
 gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM
           16994]
          Length = 273

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 77/264 (29%), Gaps = 19/264 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               EY        L+  +  ++     +I  ++       I +  +   + +  +   +
Sbjct: 6   EAFIEYITVIKA--LSPRTIEAYSRDLGEI-EQNAQKALVDIDSNTVFQILGTLSNK-RT 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSE 188
             + L++      +  R      +        K      +  T E +Q            
Sbjct: 62  LNRKLSAFNSFLDFCHRN--RFDSLSTKFSLSKVPKNLPKYVTYETIQAGLGMIDRSDWI 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G +      FL  +G R S++  A    ++     I+  K      V +    +K L   
Sbjct: 120 GLRDYALILFLYATGSRISEALIAEEGDIEIEWLRIRHGKGEKERYVPIAHEALKALRAY 179

Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                  K   ++N   + ++        +       +  S H +R   AT     GA  
Sbjct: 180 QEASPYNKPYLWLNYRGEPLSRISAFKITQKY-----LGVSPHALRHSYATALILGGADL 234

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
             +    G  ++   + YT    +
Sbjct: 235 RVVQELLGHASLLTTQIYTHVQKQ 258


>gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 343

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 106/351 (30%), Gaps = 19/351 (5%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           MT    LP +V  +R   G + +  R      +         F   Y   L G       
Sbjct: 1   MTRK-SLPKYVYNDR---GYLRFIRRSRGISVMMHEEAGTPEFWDHYNRLLKG------- 49

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +P       + LI  Y +S  +  L   +R  +  Y   I     + D  +I T HI 
Sbjct: 50  NPAPAPVRRNFEALILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIY 109

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDM 179
               +       A   +  M VL   A    ++        +      +    W    D 
Sbjct: 110 ELHRANADHWRQANYLVQVMVVLMNHARLIGFIKKEHGNPAKGIPLFKQQSDGWEPWPDD 169

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            + +       + RL +E  + +G R  D  +   +H  +  F     KT   + + L +
Sbjct: 170 VRAEFEALASKRARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTN 229

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSAT 295
                L        T   +   + ++    +   +    K    K      HG+RK +  
Sbjct: 230 RLKTHLEGIARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKTHGLRKNATI 289

Query: 296 ISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISSVV 343
               AG     + A  G   V+  + Y    +  +  +   +   ++    
Sbjct: 290 ELYLAGCDDEMVKAVTGHSGVEMLKKYGGPIRQRELAKRAQEARNQMERSK 340


>gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
 gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8]
 gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359]
          Length = 253

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 21/260 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           + EY +        +  +   + S   +         +  IT +  +  + +  K+ P++
Sbjct: 1   MDEYLEYLKVVKKRSERTLYQYRSILREF------TRFEPITPETWKEYLNTISKNAPAT 54

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  ++    W   +  +        E    +   +    + D  +      +    
Sbjct: 55  QRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIEACDNPLY 114

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           R  F+ L  +G+R S+     V  +            K      + +    ++ L  +  
Sbjct: 115 RAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINVSKELVEELMNSGF 174

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            ++         K +        K  A KAG+ K  + H  R   A    + G   +++ 
Sbjct: 175 FEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQ 225

Query: 309 ATYGWKTVDQAETYTKGADR 328
           A  G   +     Y K A  
Sbjct: 226 ALLGHANISTTSIYLKIASE 245


>gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 386

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 119/386 (30%), Gaps = 52/386 (13%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    +    + +     G+       G     + +  + +  T       A+  +  K 
Sbjct: 1   MARRSKGEGSIYQRSD--GRWQGRVVIGKDEQGKTKYQFFYGKTKAE-VTKAVKEAVGKV 57

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           E         TT       +  S    ++  ++  ++E+++   I    G     KI   
Sbjct: 58  EKGIDINAGKTTFTEWFEIWLASKK-NNIKPSTYDTYETFWRVHIKSALGHMKLDKIQPH 116

Query: 118 HIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIR 172
           H++  ++ ++    +P S     T++    K A++Q  +         +E PK       
Sbjct: 117 HVQKLLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKIKEV 176

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               +D  +     ++  +  +A+   L  G+R  +      +++     ++  +   T 
Sbjct: 177 KPLTQDDVKAFIATAKEDKFSVAYILSLALGMRKGEVLGLQWENIDFEQKTLTIKNNLTR 236

Query: 233 -----------------ITVELPDGFMKLLAMTPI--------------------GKETF 255
                              V LP+  + LL+                             
Sbjct: 237 VKGKGLVLTTPKTASSNRVVLLPEKILTLLSEHGRKQAVEREIAKASGKYSEAEGFDNMV 296

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
           F   + + +    F   FK    KAG+++   H +R    T+  +AG     + AT G  
Sbjct: 297 FTYEEGKPVCPRYFERKFKKVLEKAGLSQAGLHSLRHSYGTLQNEAGVNMKAIQATLGHS 356

Query: 315 TVDQAE-TYTK-GADRIRLGIKNSRR 338
                   YT+   +  R   +   +
Sbjct: 357 KASFTMSVYTQNTTELQREATQAVDK 382


>gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1]
 gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1]
 gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 314

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 28/281 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI---RSGVE 124
             ++ + K        +  +  ++               G   Y ++    +    S + 
Sbjct: 4   DYLTLFLKYIRVERQYSEETAAAYREDIQAFNDFLTANGGAKAYTEVDRLDVNVYLSHLY 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DM 179
            R  T +S  + ++S+R  + + V+ +   +NP + V+  K      R + ++       
Sbjct: 64  DRHLTRNSIARKVSSLRSFYNFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQ 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
             +      G++     E L  +G+R S+     +  +  ++  +    K      V   
Sbjct: 124 TVYADDSVMGARNAALLEVLYGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYVPFG 183

Query: 239 DGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 L           +            N     +              K+ +  + 
Sbjct: 184 RYAATALQHYETVCRQPVMAKYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLTADI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R   AT   + GA    +    G  ++   + Y   
Sbjct: 244 HPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHV 284


>gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 330

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 47/309 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTK 117
           LK  ++ Y ++      ++N+   +        R                  D   +  +
Sbjct: 13  LKDFLN-YLQTI--KGKSINTVQVYFYDLRVFFRFLKMDRNLVDKKLDFDKIDICDVDIE 69

Query: 118 HIRSGV------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164
            I++               +R +T  +  + + S++  F +   + + + +NP   +E P
Sbjct: 70  LIKTVTLSDLYSFMSYVSNNRDNTSYARARKVASLKSFFNYLFNKAKLLNVNPASELESP 129

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           K      R    E+ +Q  S  + G+   +        L  G+R S+     + +++N+ 
Sbjct: 130 KILKRLPRYLNVEESKQLLSSVNTGTYSERDYAMLTLFLNCGMRLSELVGININNIKNDT 189

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWF 273
            +    K     ++ L    ++ +      +           FI+  KQ+++        
Sbjct: 190 LT-VIGKGDKERSIPLNSACLEAIEAYMKVRPVNGVKDKNALFISGRKQRISKESVQKIV 248

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
           K    +AG++    S H +R  +AT+    G      L    G +++   E YT   D+ 
Sbjct: 249 KKYIKQAGLDPQRYSTHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTH-LDKE 307

Query: 330 RLGIKNSRR 338
           +L      +
Sbjct: 308 QL-KDAVDK 315


>gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7]
 gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 97/295 (32%), Gaps = 46/295 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123
           Y ++      + N+   ++       R                 +     I    +R   
Sbjct: 23  YLETI--KGKSQNTIKGYKIDLTMFFRFLKIYKGLINDETLDFEEIPIGDIDNSLLRKIT 80

Query: 124 ------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
                       + R+++  +  + + +++  FK+ + R + +  NP + +E PK     
Sbjct: 81  LADLYAFLSFTEKYRQNSTYARARKVATLKSFFKFLSSRAKVIDENPAVDLESPKISKRN 140

Query: 171 IRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               T ++ +            +        L  GLR S+ C   + +++ +I +    K
Sbjct: 141 PTYLTLDESKSLLKAVSGRNKERDYCIITLFLNCGLRLSELCSINISNIKGDILT-VIGK 199

Query: 229 TGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                TV L +  +K L              I K+  FI+ +  +M+     +  K    
Sbjct: 200 GNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMSKRTVEVMLKKHLI 259

Query: 279 KAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
            A ++    + H +R  +AT+    G      L    G + V   + YT   D  
Sbjct: 260 NAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEK 314


>gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
 gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++    D++ + +       +T   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D    M    +  
Sbjct: 66  RSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
           +EG + R   E    SGLR ++     V + Q + +                        
Sbjct: 126 TEGIRDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M         K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT-SLDFQHLA 292


>gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
 gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           6P18H1]
          Length = 295

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D II+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
 gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126
           + ++ +   +    + ++  S++   +             +  K   K IR+ +      
Sbjct: 13  LEKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFFLRTESSDNLAKADKKIIRNFIVELSEH 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  S  + L+S+R  + + ++   + ++P   +   K   E   P +KE+M       
Sbjct: 73  NISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLKFYAEKQIPMSKEEMADLNDRV 132

Query: 187 SEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
            E       +   E L  +G+R ++ C    +++      +K          V +     
Sbjct: 133 FEQVHDVLEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGNKERVVPISSELA 192

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA--GVNKSAHGVRKFS 293
           +LL      +           +N            +      +       KS H +R   
Sbjct: 193 ELLTSYLEIRNPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLITTKEKKSPHILRHSF 252

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   D GA   ++    G  ++   + YT
Sbjct: 253 ATHVLDNGAEISKVKKILGHSSLASTQVYT 282


>gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG]
 gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG]
          Length = 292

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 89/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++++  +  +I+          V      +  L      +++   
Sbjct: 138 LYSCGIRLSELSSVELKYISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
 gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731]
          Length = 311

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 27/273 (9%)

Query: 88  AVNSRISFESYFDQIIRKSG----DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSM 140
           +  +  ++ +              DF + ++T   IR   + +  R  +  +  + ++S+
Sbjct: 31  SPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRDLSRRTIARRISSL 90

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAF 196
           R  +++  R+  V  NP   V  PK + +      + ++             G + R   
Sbjct: 91  RSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPDCTTVLGRRDRAIL 150

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLAMTPIG 251
           EFL  +G R S+     +  +              ++    +           L  +   
Sbjct: 151 EFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCVAAMEDYLRHSRGT 210

Query: 252 KETFFINNDKQ---------KMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300
               +     Q          ++A                  + S H +R   AT   D 
Sbjct: 211 LMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDH 270

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    +    G  ++   + YT         +
Sbjct: 271 GADLRAVQELLGHVSLSTTQIYTHVTAERLTAV 303


>gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium]
          Length = 294

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 23/287 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHT 129
               +        +++  +  +++    +  +   D +++ +T  H R     +  R+ +
Sbjct: 5   FAEGFLHHLENERNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMS 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
             +      ++R  +K+ V +  +  NP   V+ PK   +     T + + +        
Sbjct: 65  KPTQRLHFAALRTFYKYLVERHGLETNPLKQVQLPKLDRKLPVVLTAKQVVELLEAPLKV 124

Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----II 233
                       +     E    SGLR ++     V  L     S++    G       +
Sbjct: 125 DKQKQAPVWMPFRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGRKERVVPV 184

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                    K      +     FI+  + ++   +  +  +       +    + H +R 
Sbjct: 185 GQPALLAVQKYRQEAKVHVGPLFISKLRTRLTPMRVWLVIQRYLPHTSIPVNVTPHKLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
             AT   D GA    + +  G  ++   + YT    +R++    ++ 
Sbjct: 245 SFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAH 291


>gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 299

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 88/287 (30%), Gaps = 28/287 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES-- 125
           ++ ++          + ++  ++ +     +  +G           +T +  R+ +    
Sbjct: 5   VLDQWGAHLRHSRGASAHTVRAYTADLAAFLAFTGTDPADPGAASALTLRAARAWLADSV 64

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTK 176
            R    S+  + + ++R    WA R+     +   ++   +      R           +
Sbjct: 65  ARGAARSTVSRHVAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALLE 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
               +  +      +     E +  +G+R S++C      +     +++   K     TV
Sbjct: 125 CARSRASADDPVSVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKERTV 184

Query: 236 ELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
                    L    +             F+      ++             +AGV + + 
Sbjct: 185 PFGVPARDALDQWTVRARPSLAVGTDALFVGAKGGPIDPRVVRAMIHRMCARAGVRDIAP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           HG+R  +AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 245 HGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTH-VDAGRLSD 290


>gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
 gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC
           15579]
          Length = 358

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 103/339 (30%), Gaps = 31/339 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   + ++GK          ++ +  +  +S    A    L       +    P  +  
Sbjct: 16  FIVSYKDKNGKW--------KQKSKQGFKKKSDAKKAADKLLDELKEMFKNNIDPSSENI 67

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T      +Y +       ++N+ ++F +  +   +   D D  KITT  I+  +++    
Sbjct: 68  TFGEFSDKYIEHLKLYR-SINTILAFNTVLNHF-KHLDDTDISKITTLDIQLVIDNLTKE 125

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              P++   ++  +  +FK A  +   +   P  +++    K    +       +     
Sbjct: 126 GLNPNTIHDYVRKLNTIFKAARDEYNLIYNLPTKNIKINANKKPTNKKALNNHDENKLLG 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233
             + S+  L     L  GLR  +      + +     +I   K    I            
Sbjct: 186 DFQNSKYYLIILLALKCGLRLGEILGLKWEDIDEVNNTITINKQWKQIDAGRSIYGYGRV 245

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                   +P   + L  +          N      N    SI   A   K G + + H 
Sbjct: 246 KGKNSNRTIPISQLTLNELKKYKNIVNINNRIFSFKNTDSVSICLNALLKKEGYDITIHE 305

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +R   AT     G     +    G        TY+   D
Sbjct: 306 LRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVND 344


>gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida
           U112]
 gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112]
 gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549]
 gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548]
 gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 292

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++ +  +  +I+          V      +  L      +++   
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48]
 gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 35/290 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + +  +R ++      +   +G          +       + +++R    S+  +   +
Sbjct: 17  RNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGLASSTLQRKRAA 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194
           +R  +++ VR+     +P   +   K+     +  +++++    +        + ++ + 
Sbjct: 77  VRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQC 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT----- 248
             E    SG+R S+     +  +Q +    I   K GT   V L       +        
Sbjct: 137 LIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSARAAIKDYLDIRP 196

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                        F     +  +   +        A +AG++    S H +R   AT   
Sbjct: 197 LFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPHVLRHAFATHLL 256

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           + GA    +    G   +   + YT  A           R+  VV++  P
Sbjct: 257 EGGADLRVVQTLLGHADISTTQVYTHVATE---------RLKEVVETHHP 297


>gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 327

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L       +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
 gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633]
          Length = 311

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 91/292 (31%), Gaps = 33/292 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--- 128
           I  +          A N+  ++    +   ++ G          T  +   +        
Sbjct: 6   IDLFLDMMAAERGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQTADVERFLSDLASDGL 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P++A + L++++  +++ +++   A +P  ++  PK+     +  ++  ++        
Sbjct: 66  SPATAARRLSALKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFDAADR 125

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSC-------------------RAGVQHLQNNIFSI 224
                G + R   E L   GLR S+                         + +     +I
Sbjct: 126 IEGADGFRLRALLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERLVPLTDSAI 185

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           +  +    +  +       +                   +   +F+   KA +  AG++ 
Sbjct: 186 RAVEAYKAVRADHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKALSLAAGLDP 245

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              S H +R   AT     GA    + +  G   V   E YT   +     +
Sbjct: 246 QQVSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKAL 297


>gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
 gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup]
          Length = 322

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 29/273 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKH---TP 130
                ++  +  ++E    Q +              D   +    +R+ +  R+    + 
Sbjct: 34  VQTRRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDLAHLRISDLRAYLAYRRTNNVSA 93

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFK 183
            S  + +  +R  FK+  R+  V +     +  PK      +P   +          Q +
Sbjct: 94  RSLSRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPKSLPKPLAIKSALHIVKQENQLE 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241
           +     ++       L   G+R S++     +   +   +    T K G    V L    
Sbjct: 154 NEPWISARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGGKTRLVPLIKVV 213

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHGVRKF 292
            + +           +NN      A              +      G+    + H +R  
Sbjct: 214 YEAVQNYLKCCPYPLVNNQPIFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHS 273

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT     G     +    G  ++   + YT  
Sbjct: 274 FATHLLSRGGDLRTIQELLGHASLSTTQIYTHV 306


>gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032]
 gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC
 gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032]
          Length = 305

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 28/279 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127
           L  EY +     + +  +   +    ++ +R        G  +     T+   +    + 
Sbjct: 10  LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
            T  +  + ++++R  +K+ +R++ V  NP L V  PK+         +E+         
Sbjct: 68  LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                G + +   E L  +G+R S+ C      L  ++ ++    K      V       
Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187

Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287
           + L                       F+N     +              KA   ++   H
Sbjct: 188 EALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    +    G   +   + YT  +
Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVS 286


>gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007]
          Length = 334

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    +         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTKETGN 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group
           II '5-way CG']
          Length = 314

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 21/296 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127
           ++ L+  + +        + ++  ++      + R  G+        + + +      R+
Sbjct: 5   VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFALARFLGEHGLSLLDFSPEDVTRYFTRRE 64

Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R   ++  R+  +      ++  P+          +E++ +     
Sbjct: 65  DLAMRSRSRVLSAIRSWSRFLKRRG-LPSIDPDTLPVPRLPRNLPGVLDEEEILRLLEAP 123

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                EG + R        SGLR S+     +  L      I+            L    
Sbjct: 124 DPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVAFLDGVS 183

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
              L +                F+   +         +  K  A + G+++  S H +R 
Sbjct: 184 CARLRLYLERVRPSTSTSDKTLFLTRRQTGFTRQGLWLLIKGYAKQCGIDRNVSPHTLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AT     G     +    G   +   E YT   D   L    +R        D 
Sbjct: 244 SFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLARYHPRGKQPDR 298


>gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 451

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 99/345 (28%), Gaps = 26/345 (7%)

Query: 26  RKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRK- 80
           R   G   R R+  P          +         +    PR+     TL      + + 
Sbjct: 52  RLPDGTPIRERVKAPVSGKSAALRWAQEREGQILAQKGRKPRQARVVPTLAEFKPRFIEG 111

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136
                 L  ++  ++ES F   +    G      I  + ++         +    S    
Sbjct: 112 HVKANRLKPSTAEAYESVFRTHLEPTFGSLRLDAIGDELVQRFKGELVEDEMANKSINNV 171

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           LT++ V+ K AV  + +   PC          E       E     +   +   +  L  
Sbjct: 172 LTALSVMLKRAVDWKVIDAMPCRIRLLKWELVEVPFYDFAEYRYLVEGAAAIDPRIELLV 231

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLL 245
                +GLR  ++       +            +    +   K G    + L +   + L
Sbjct: 232 LLGGDAGLRRGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRRLPLTERLAEAL 291

Query: 246 AMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                 K    +  D        +  +W +    +A +  +   H +R    +  A  GA
Sbjct: 292 RSHRHLKGPRVLYYDGGASPTNKEIRMWVQRAQRRAVLPATGAYHILRHTFCSHLAMQGA 351

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           TA  +    G + +   + Y   +   +     + R+      +D
Sbjct: 352 TAKAIQELAGHQDLTTTQRYMHLSPAHK---DAAIRLLDRRPVED 393


>gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans
           OCh 114]
 gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114]
          Length = 306

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 83/289 (28%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
              +  +          A N+ I+++      +           G      ++   +R+ 
Sbjct: 9   ADALQSWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADVSVTDMRAW 68

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   + T  +A    + L++++  +KW   +E       LS   PK + +  RP   +  
Sbjct: 69  MAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAA 128

Query: 180 QQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +                ++       L   GLR S++                + K G  
Sbjct: 129 RNLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLTAADAPLPATLRISGKGGKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285
             V +       +             +           +          A   + G+  +
Sbjct: 189 RIVPVLPAARDAVDAYVRMCPHPQTADAPLFRAVRGGPLRPGAIQKVMAAARMQLGLPAT 248

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT   +AG     +    G  ++   + YT   D +RL 
Sbjct: 249 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTVRLM 296


>gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 311

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            + ++ A    L+ ++  ++E    Q +    G         D R++     R+ + +R+
Sbjct: 18  AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADFRAFLAARR 77

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
              S A    + L  +R L ++  ++  V      ++  PK+     +P +         
Sbjct: 78  KQGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITVVS 137

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
              Q        ++       L   GLR S++       L+    +++          V 
Sbjct: 138 NEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKKGATTLRITGKGNKTRLVP 197

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287
           L       +              +     A              +   +  G+    + H
Sbjct: 198 LLSVVFDAVEKYRTLCPYDLEPGEPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|259417091|ref|ZP_05741010.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259345997|gb|EEW57811.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 391

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 84/347 (24%), Gaps = 23/347 (6%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            ++ K RT  G      R    G+   I L     +  I    +A+       +     +
Sbjct: 40  RYIYKYRTHGGGRRAQTRWMTIGNYGEIPLE---TARNIALECAAMVARGQDPQSDKIKK 96

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           ++  +L  L   + +S     L   +   + S +  I+    G      I+   +     
Sbjct: 97  REAPSLVDLWGRFEES-DMKRLKPATIRDYRSLWKNILEPALGKRRVADISRADVDRLHR 155

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S   TP  A + +  +  +   A   E+            + +      +   +  +   
Sbjct: 156 SMSDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRYVTRHREGKRERYLSTEELERLG 215

Query: 185 FWSEGSQPRLAFEFL--------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                                  L  G R S+        +      I    + T     
Sbjct: 216 AALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEWNWIDWERRIIALPDSKTGAKPL 275

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVR 290
                   +            +                S  +K    +A +     H +R
Sbjct: 276 FLSNEAITVLQNQKITTRHQSSKFVFPGAKANKAIVNLSKPWKLICEEAELENLRIHDLR 335

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
             +A+I+   G     +    G         Y    AD         
Sbjct: 336 HTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPALKAANAI 382


>gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM
           4136]
          Length = 318

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 84/307 (27%), Gaps = 27/307 (8%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-- 104
            +A    + K+        +      L  ++        S +  +  ++        +  
Sbjct: 2   AAAAPRKSGKKVVPARREPEGMARSELEMDFLTFMEVERSASPKTLENYRHAMSTFRKSQ 61

Query: 105 ----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                                         ++      ++R  FK+  R+  +  NP L 
Sbjct: 62  PACMTWESLTPDDFRLYLYEQMKAELGR--ATIRLHFAALRSFFKFLTRRRGLVKNPLLE 119

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDS 209
           V+ PK + +     T   ++   +                 +     E    +G+R S+ 
Sbjct: 120 VQLPKPEKKLPVVLTLSQVETLLNLPLNTPREKQAPAWAPERDAAILELFYSTGVRISEL 179

Query: 210 CRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKM 264
               V+ +     +++            +    ++ +        +     F +   ++M
Sbjct: 180 ASLNVEDVDVYSETLRVIGKGRKERICPVGGPAIRAMQRYQSRLGVYSGPLFRSKVGKRM 239

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +   +     +G+    + H +R   AT   + GA    +    G  ++   + Y
Sbjct: 240 TNQAINNVVEKYWKLSGLPVQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIY 299

Query: 323 TKGADRI 329
           T      
Sbjct: 300 THVTTER 306


>gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis
           C6786]
          Length = 325

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133
           + +      L+ N+  ++        +         +   +                +S+
Sbjct: 45  WLEH----GLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSS 100

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   A++P L +   K+        ++  ++   +     +   
Sbjct: 101 NRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLG 160

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 161 LRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERY 220

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 221 LRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 280

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 281 LLNHGADLRVVQLLLGHSDISTTQIYTHVA-RERL 314


>gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
 gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp.
           NAS-14.1]
          Length = 353

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 22/328 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           RT+  ++  Y     G R R        F  A   A+          N+ R    TL   
Sbjct: 4   RTKKTRVYQYDIVVGGHRFR-GSCGTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           +  Y      G  +  +  S        +   G     K+T   I       +     S+
Sbjct: 61  LGTYINDKIAGRPSEGTTKSQARVILSYMD--GKKRISKLTDADITQYAAKHRATCANST 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  +    +   +       P + ++  + K    R       +Q + F +   + 
Sbjct: 119 VNRHLQMLGRALRHMGKIYK-TEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQEF 177

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
                F L +G R S       + +      I  +  G  + +   +G +  L       
Sbjct: 178 HPIVAFALMTGARISTITGLLWRDVDMPNREISFRLKGDELMIFPINGELAALLSALPKS 237

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
                        +       +   +   F   ++     AGV     H +R   AT   
Sbjct: 238 NVMESRRYVFTRVDGHSAERIQIVASGGVFGTVWRKALLDAGVENFRFHDLRHTFATRML 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
                   +    G   ++    Y    
Sbjct: 298 RKTQNISLVSKLLGHTNIETTSRYAHVL 325


>gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
 gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces
           viscosus C505]
          Length = 307

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 33/302 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTK 117
           P T   L+  YR        L+ ++  ++    + ++   G         D     +   
Sbjct: 2   PRTRADLLDSYRSYLALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLA 61

Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +R  + +     H+ ++  +   S+R    WA     +  +    +  P+         
Sbjct: 62  DLRDWLAAMAASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVL 121

Query: 175 TKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           T +   Q                 +     E L  +G+R S+     V  L ++  +++ 
Sbjct: 122 TTQQASQLLKTASDLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRV 181

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAK 276
             K     TV       K L      +      +           ++++           
Sbjct: 182 LGKGRKERTVPYGLPAAKALETWLHRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRL 241

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
              A V     HG+R  +AT     GA    +    G  ++   + YT   A+R+R   +
Sbjct: 242 CAAAQVPDLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYE 301

Query: 335 NS 336
            +
Sbjct: 302 QA 303


>gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237]
 gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237]
          Length = 308

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFL 137
              ++N+  ++E+  ++ I    D        +++   IR+ + +         +  + +
Sbjct: 26  KKYSLNTIKAYENDLNEFILFCKDTSEVVNIDEVSYVMIRNWIVALVAAKIVNRTINRKI 85

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQP 192
            S++  +K+ ++ E +++ P    +  K   +   P+++ +M +           EG + 
Sbjct: 86  ASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAEMNEILVAIPFSEDFEGIRD 145

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG- 251
           +L  E L  +G+R  +     V ++     +IK         +      + LL    +  
Sbjct: 146 KLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIVPLVASLVLLFQEYLDA 205

Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300
                    KE  F+     K+  T              + V KS H +R   AT   + 
Sbjct: 206 RSSVVSVGAKEFVFLLKSGGKIYETLVYRVINHYFGLVSSKVKKSPHILRHTFATHLLNK 265

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 266 GADLNSVKELLGHASLASTQVYTH 289


>gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 385

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/357 (11%), Positives = 96/357 (26%), Gaps = 49/357 (13%)

Query: 15  RTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R R+ K  Y  R    G+          T   A ++A      +     + +    T   
Sbjct: 5   RKRNDKWEYRIRYKEMGKYKETSRGGFKTKKEAQLAA-AKVEERIANGGNIQDNKVTFNE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            + E+  +   G+++  +   +E      I+   G+   +++T    +  + +   K++ 
Sbjct: 64  YMYEWLNTFKKGNVSPRTYTVYEKNIRLHILPAFGELKLKELTRIKYQKFINNLLEKYSK 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
            +      +M      AV +  +      +  + +      +    +     +       
Sbjct: 124 KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTNHINPKQDEIKCYDIDELQQFLNY 183

Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------------- 222
                 G +    F FL  +GLR  +      + +                         
Sbjct: 184 ILKEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFVNKTLLSTKRNEGIIFG 243

Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQF 269
                           T + +     +   ++L            F   ++   ++ +  
Sbjct: 244 PPKNKSSKRTISIDPSTMSHLKKMKLEQNKQILKNGKYYKDHNFIFTHEDNSCMLHPSTL 303

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
               +    K      + HG R   A     +GA    +    G  ++D     Y  
Sbjct: 304 KF-LQQACKKGNFKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359


>gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 328

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 44/301 (14%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYF---------DQIIRKSGDFDYR---KITTKHIR 120
              +Y        +L+  +  ++++               +            +    IR
Sbjct: 13  YFDDYLIHLGTELNLSPRTIRNYKNDIIGNQQKGEPHGFFQYLEQHRLSFPSDVDKYVIR 72

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---------KRKT 168
             +          SS ++ L+++R LF++ +R+E +  +P     +          K   
Sbjct: 73  GYIAWLLEQGVVKSSVVRKLSAIRSLFRYLLREEIITESPLPVTRKHGGRLSAFSIKLDK 132

Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 T ++M++           G + +   E +  +GLR S+     V  +      +
Sbjct: 133 RLPSFLTVDEMERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVSQVDYYSREL 192

Query: 225 KTQKT-GTIITVELPDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIW 272
           +          V +                  LA      ++ F+N     ++       
Sbjct: 193 RVTGKGQKERLVIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGSLSVRSMQKL 252

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329
               A  AG+      H +R   AT   D GA    +    G  ++   + YT  + ++ 
Sbjct: 253 ILRYARIAGIRQEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQA 312

Query: 330 R 330
           R
Sbjct: 313 R 313


>gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 308

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 94/296 (31%), Gaps = 24/296 (8%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKIT 115
                 R     +   ++ +        +LA NS  ++      +           R   
Sbjct: 3   ATATPGRAARDPVDEDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDAD 62

Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +   +  R        S  + L+S+R  + +A R+ +   +P  S++          
Sbjct: 63  AADLSLFLAQRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPA 122

Query: 173 PWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227
             ++ ++    +        G +     E L  +GLR S+        L      +    
Sbjct: 123 VPSEGEVDALLAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLG 182

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKA 277
           K      + + +  ++ L           + + +            M+  +F    KA A
Sbjct: 183 KGSKERLIPVGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHA 242

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           TKAG+    S H +R   AT   D GA    +    G   ++  E YT  A + RL
Sbjct: 243 TKAGIRSAFSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIA-QARL 297


>gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 330

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 91/309 (29%), Gaps = 23/309 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R R  +P +S  + A+ + +     +       R+   TL  LI  + +       
Sbjct: 19  RGGKRFRKTFPLKSEAL-AWEAWVKSQVAQSPEWEPERRDLRTLAELIELWYQHHGCNLR 77

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
           +             +    G+    + + +        R  +  +A         +R +F
Sbjct: 78  SA---ADTLRRLLAMAEAMGNPVADRFSAEDFAKYRAQRLESGVTANNMNREHAYLRSVF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201
               R         L++ R  +  E    W   D  Q      E  + +   L  +  L 
Sbjct: 135 NELKRLGLWKKENPLAMVRQFKIPEKELSWLTVDQIQTLLAELENCRNKDALLVAKICLS 194

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  ++       L+N        K+G   TV + +G    L    +G          
Sbjct: 195 TGARWGEAEGLRKSQLRNQSLQFTGTKSGKNRTVPVAEGLYDELKAKDVGSTDRLFQYC- 253

Query: 262 QKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                      F+    + G+     +  H +R   A+     G     L    G +++ 
Sbjct: 254 --------WGAFRDAVERCGLVLPDGQMTHVLRHTFASHFVMNGGNILVLQKILGHQSLT 305

Query: 318 QAETYTKGA 326
               Y   A
Sbjct: 306 MTIRYAHLA 314


>gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 325

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 45/287 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY-------------------------RKITTKHI 119
            + + N+   +       +R     D                          + +T  ++
Sbjct: 21  KNKSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNL 80

Query: 120 RSGVESRKHT----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         P +  + + S+R  FK+   + + +  NP   +E PK      R  
Sbjct: 81  YEYFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140

Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T ++ ++  S        +        L  GLR S+     +  +++++  I  +     
Sbjct: 141 TLDESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGN-KE 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV-- 282
             + L       +      + T         F++  K++++        +     AG+  
Sbjct: 200 RIIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQ 259

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              SAH +R  +AT+    G      L    G +++   E YT   D
Sbjct: 260 KKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306


>gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4]
          Length = 414

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 103/354 (29%), Gaps = 45/354 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            GR +R  +   +      +  LT +  +            TL   ++ + ++   G L 
Sbjct: 60  DGRPVRKSFYART--REEAVKKLTQALHQASLGVLTAPARLTLGEWLATWLETYKKGKLR 117

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLF 144
             +  ++E+     I+   G    R +T   +++   S      SA         +    
Sbjct: 118 PTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSLSARGLSARTVRLVHVVLNACL 177

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K AV+   +  NP  + E PK K          +  +     + G +   AF   L +GL
Sbjct: 178 KQAVKNGLLVRNPAEATEPPKLKRRVPVRPLAREEVEAFLKAARGERLYPAFALALKTGL 237

Query: 205 RCSDSCRAGVQHLQNNIFSIK----------------------TQKTGTIITVELPDGFM 242
           R  +      + +      ++                       +   +  TV L    +
Sbjct: 238 RRGEVLGLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLVFQEPKTEKSRRTVPLTRDVV 297

Query: 243 KLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
            LL      +                 F     + +    F   F +   KAG+     H
Sbjct: 298 ALLKSHKARQNEEKLYFGEAYEDNGLVFCTELGKPIWPRNFLRAFHSVLKKAGLERHRFH 357

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339
            +R   AT+   +G     +    G + +      Y +   D  +  +      
Sbjct: 358 ALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEVLEDAKKKAVTRLDAF 411


>gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PA7]
 gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC
 gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       ++ ++   ++    +I+    K+G  D+  + T+ +R+ V       
Sbjct: 5   LDAFLEHLRSERQVSAHTLDGYQRDLLKILALAEKAGLTDWNALDTRTLRTFVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R  +++ +R+     +P   +  PK   +  R    +   Q      
Sbjct: 65  QSSRSLARLLSATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     ++ L      ++ +     +  + +     
Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L                 FI    +++      +  +     + G +   H +R   A
Sbjct: 185 QALEAWLPLRAQATPEDGAVFIGRGGKRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281


>gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 383

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 111 YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 170

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++    +  + +         + R K         +K ++++         +  
Sbjct: 171 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
                +  +GLR S+      Q + +   S++            L    ++ L       
Sbjct: 227 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 286

Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306
                        ++ +A+      K  A +AG+    H   +R   AT   + G   H 
Sbjct: 287 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 346

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G   +     Y   +   +
Sbjct: 347 IQELLGHNDIKTTTIYLHVSSAHK 370


>gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica URFT1]
 gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp.
           holarctica 257]
 gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 292

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++ +  +  +I+          V      +  L      +++   
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
 gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 81/275 (29%), Gaps = 30/275 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
              + ++  ++              D      TT  IR+ +          ++  + L++
Sbjct: 18  RGASRHTLDAYGRDLADFEDFLSVRDHGIDAATTDDIRAYLAELTDRGLKATTVARRLSA 77

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190
           +R L+++   +     +P   +E PKR     +    + + +      + +         
Sbjct: 78  IRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLIDTAHDRAGEDVSSPER 137

Query: 191 --QPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + R+     L   +GLR S+         +     + T K      V L       + 
Sbjct: 138 LRRLRVVCLVELLYATGLRISELVSLPAAAARARDVIMVTGKGSKERMVPLSGPAKAAMT 197

Query: 247 MT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
                       + K  F    +   +     +   K  A  AGV     S H +R   A
Sbjct: 198 AYLAARAESGLAVSKWLFPTAAESGHLTRQHAARELKDLAVAAGVPPQALSPHVLRHAFA 257

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +     GA    +    G   V   + YT   D  
Sbjct: 258 SHLLAHGADLRIVQTLLGHADVSTTQIYTHILDER 292


>gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
 gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1]
          Length = 393

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 16/325 (4%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68
           +V   R  +G+   Y    HG         +     A    A               +  
Sbjct: 45  YVVHYR-ANGRFRRYTIGHHGPW-----TADKARDEAIKILARVKDGNDPNTERGEERTS 98

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRK 127
            T+      + +      L   ++  ++   D  I +K G      +T   + +   + +
Sbjct: 99  PTISQFCKTFIERHVKTHLKSTTQAEYQRAIDLFIIKKIGSRMVATLTHSDVVAFHHAYR 158

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H P  A + L  +  +F  A+       N        + K +    +   +  Q      
Sbjct: 159 HIPYQANRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRERYLTTEEHQRLGKAL 218

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +  +  +     AF+ LL +G R  +  R   +++  +   I+   +             
Sbjct: 219 DDGRSAMPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGIIRLPDSKNGARTVQLGESA 278

Query: 243 KLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             L       E        +K   + T     ++    +AG+ +   H +R   A+ + +
Sbjct: 279 IGLLGDITRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLHDVRIHDLRHSFASDALE 338

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     +    G + +     Y  
Sbjct: 339 LGEDLVMIGKLLGHRDLKSTARYAH 363


>gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 293

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             L+ +++ S+E   DQ            Y   T +     +  ++   S+  Q ++  +
Sbjct: 18  RRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFK 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAF 196
              K+  R++             K+++        E  Q  ++   +       +     
Sbjct: 78  QFGKFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAII 137

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP------ 249
           E L  +G+R ++ C   +        F     K      V +    ++ L          
Sbjct: 138 EVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRKGV 197

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
               +   F++    +M   Q     K     +GV+K  + H +R   AT   + GA   
Sbjct: 198 GLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGADLR 257

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
            +    G +++     YT  + +R+R   + 
Sbjct: 258 AVQELLGHESLSTTGRYTHVSTERLRSIYQA 288


>gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782]
 gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782]
          Length = 362

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L     T       F +     M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12]
 gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12]
          Length = 308

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 83/281 (29%), Gaps = 23/281 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
              ++         L+ ++  ++     ++  K          + +I+ + I+  +    
Sbjct: 5   WFKQFESHLSSERQLSAHTVRNYLYELHRVTDKLDASASFPISWSEISHEQIQHVLGQLH 64

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +P S    L++++    + + +  +  NP  ++  PK+     +    + +     
Sbjct: 65  RQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMDLDSVTHLLE 124

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
             ++     + +   E    SGLR ++     V  ++  +       K      V +   
Sbjct: 125 IDADDPLSVRDKAIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGSKERIVPVGRC 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRK 291
            +  +      +E     ++   +                          +    H +R 
Sbjct: 185 AIDAIQAWLTFREAIPCQDEALFVTAKGNRLAHRSIQARLAKWGQEQALNMRVHPHKLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++ A    +    G   +   + YT   D   L 
Sbjct: 245 SFATHMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 284


>gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 293

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 29/299 (9%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVES 125
             T++  +  +          A N+  ++           G         + + R  +  
Sbjct: 2   RRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIG--PLATAGREDLARLAIAW 59

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  +  +++R  + + V +     +P  ++ RPK +    R      ++     
Sbjct: 60  SDLAASSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRT 119

Query: 186 WSEGSQ--------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----KTGTI 232
             E ++             E L  SGLR ++     +  +  +   +        +    
Sbjct: 120 AEEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVP 179

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           ++          L     G    F +     ++  +     +  A +AG++    S H +
Sbjct: 180 VSARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVL 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R   AT   + GA    L    G   +   + YT           ++ R+ ++V+   P
Sbjct: 240 RHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHV---------DAARLVTLVNERHP 289


>gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
 gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702]
          Length = 476

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 116/384 (30%), Gaps = 50/384 (13%)

Query: 14  ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++ ++G+     RK              + + +     +       + L     +    +
Sbjct: 6   KKRKNGEGTLRLRKDGRWEGRIVVGYNEKSLPITKCVTAKTKTECSTKLEALKEQYGRSS 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
              K        I  + ++    +L + +R  +E   ++ II + G     +++   ++ 
Sbjct: 66  DKIKPDMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRMSQSDLQQ 125

Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                             +  +  +      + R   + AV+   +  NP +  + P +K
Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQDGLIRTNPAVCCKLPPKK 185

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              ++  T+ ++ +F     E     L F   L +G+R  +        L      ++ +
Sbjct: 186 AREMQVLTQNEILRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIE 244

Query: 228 KTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQKMNAT 267
           +   II  E+                        +                ++ +  N +
Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPS 304

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                 +    +AG  K   H +R   AT++ + G     L A  G  + +     Y+  
Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHI 364

Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348
            D   R    +  R     D+  P
Sbjct: 365 TDTMQRQAAVHIDRKIGGTDARMP 388


>gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 304

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 84/298 (28%), Gaps = 31/298 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITTKHI 119
            T +  ++ + +       L+  +  ++      Y   + R  G      D   +T    
Sbjct: 1   MTSQDALAAWLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEA 60

Query: 120 RSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP- 173
           R+ +  R+         S  Q L ++R    +  R+  VA      V  PK K    RP 
Sbjct: 61  RAHLAERRSGDRPLNARSLSQTLAAIRGFHAFLDRRLGVATPQLALVRGPKVKPSLPRPV 120

Query: 174 -------WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                     E          E ++ R     L   GLR S++                T
Sbjct: 121 SEDQAKGLLHEPEADPDMEPWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPESLRIT 180

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK 279
            K      V +     +        +          F       ++A       +    +
Sbjct: 181 GKGDKTRMVPVLPEVREATQAYLALQPFVIDADQALFRARRGGPLSARHVQATVQRLRGR 240

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            G+    + H +R   AT    AGA    +    G  ++   + YT+      L    
Sbjct: 241 LGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYA 298


>gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644]
 gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644]
          Length = 442

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 102/323 (31%), Gaps = 31/323 (9%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFES 97
             S            +  +            TL  LI E+  S      ++ ++  +++ 
Sbjct: 110 GGSKAQARGSRKREPNGRRTPPGARDSSPKPTLHPLIVEFVTSLERNREVSEHTLRAYQE 169

Query: 98  YFDQIIRKSG--------------DFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRV 142
                 R                 D         +   S +  + + P +  + L S+R 
Sbjct: 170 DLGLFSRYLAESQPGCASSDREPIDPRLADARRLRGYSSWLSRQGYAPGTIARRLASLRT 229

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198
            ++   +  ++  +P  ++  PK      RP   + +++         S G + R   E 
Sbjct: 230 FYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIERLLEAVPTDQSLGVRDRAILEL 289

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGK- 252
           L   GLR  +     ++ L      ++ +  G       I  +  +   + L        
Sbjct: 290 LYGGGLRVGELVALDLEDLDLERNVVRVRGKGRRERLTPIGKQAAEWVRRWLTHRRPDHG 349

Query: 253 --ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                F+N   +++ A      F+  A   G++   + H +R   AT   D GA    + 
Sbjct: 350 GEHALFLNRYGRRLTARSVDRLFETHARGLGLDADATPHSLRHSFATHLLDRGADLRSVQ 409

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G + +   + YT    R RL
Sbjct: 410 ELLGHRRLTTTQIYT-QVTRERL 431


>gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 379

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 113/373 (30%), Gaps = 40/373 (10%)

Query: 6   RLPPFVTKERTRHG-KIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + PP   + R   G K  Y +       G+R +       T   A  +A+   +      
Sbjct: 11  KCPP--ERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLN-G 67

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                   T+   + ++ ++     +A N+     ++    I    G      +T  H++
Sbjct: 68  TYVEPTKLTVGEFLLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQ 127

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTK 176
               S +  +           +   F  AV+   ++ NP   V++P   RK   ++ WT 
Sbjct: 128 KFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTV 187

Query: 177 EDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGT 231
           ED ++F  +  +G +   + F   L SG+R  +        +                  
Sbjct: 188 EDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQR 247

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------------NATQFSIW 272
            + ++        +    + + T  +    +                             
Sbjct: 248 KLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQ 307

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                  AGV   + HG+R   AT    +      +    G  T+     TY+       
Sbjct: 308 LAKTIKGAGVPEITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPN-- 365

Query: 331 LGIKNSRRISSVV 343
           +    + ++ +V+
Sbjct: 366 MQKDAASQLGAVL 378


>gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC
 gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC
 gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1]
 gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32]
 gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200]
          Length = 302

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 90/274 (32%), Gaps = 20/274 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS 131
             Y  S     L+ ++  ++    +++           +  +   + + + +  +  +P 
Sbjct: 16  ERYLHSE--RQLSAHTVHNYLYELNRVSTLLPKDVTLLNVGREHWQQVLAKLHRKGLSPR 73

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S    L++++   ++ +R+  +A+NP   +  PK+     +    + +            
Sbjct: 74  SLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLLEIEGTDPL 133

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
             + +   E    SGLR ++     +  +Q ++  ++   K      V +    +K L  
Sbjct: 134 TLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKERIVPVGSYAIKALEA 193

Query: 248 TPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISA 298
             + ++     +         ++++                  V    H +R   AT   
Sbjct: 194 WLVCRQQIPCEDCALFVTGKGRRLSHRSIQSRMAKWGQEQALSVRVHPHKLRHSFATHML 253

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           ++ A    +    G   +   + YT   D   L 
Sbjct: 254 ESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 286


>gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
 gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och
           149]
          Length = 306

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 29/288 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGV 123
             +  +          A N+ I+++      +           G      I+   +R+ +
Sbjct: 10  DALQNWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADISVTDMRAWM 69

Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + T  +A    + L++++  +KW   +E       LS   PK + +  RP   +  +
Sbjct: 70  AQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAAR 129

Query: 181 Q-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                           ++       L   GLR S++                T K G   
Sbjct: 130 NLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLAAADAPLPATLRITGKGGKER 189

Query: 234 TVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
            V +       +                 F       +          A   + G+  + 
Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQTAEAPLFRAVRGGPLRPGTIQKVMAAARMQLGLPATA 249

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT   +AG     +    G  ++   + YT   D +RL 
Sbjct: 250 TPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTVRLM 296


>gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 346

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 99/300 (33%), Gaps = 47/300 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTS 139
            +L+ N+  ++    D  I       Y    IT + +R  + S         +  + L++
Sbjct: 36  RNLSHNTLRAYSIDLDAYIAWVLARQYDALSITHRQLREYLASLSSRGYATRTINRHLSA 95

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R  +KW V Q Y   +   ++  PK      R     D+    + +     EG + R  
Sbjct: 96  IRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHDITTLFNAFDESTPEGVRDRCF 155

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  +G R S++ +  +  +  +   I+   K   +  V +    +  L+        
Sbjct: 156 VEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGKGSKMRIVPVYKECLDELSEYITKARP 215

Query: 255 F----------------------------------FINNDKQKMNATQFSIWFKAKATKA 280
                                              FI+     M+AT     F +   KA
Sbjct: 216 RLLAARTATSRRRAAGKSAAVPTRGTAATGASNRLFISTRGNPMSATALRYVFDSYIEKA 275

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            +    S H +R   AT     GA    +    G  ++   + YT  + D ++  +K + 
Sbjct: 276 NLPATLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAH 335


>gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 309

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 87/286 (30%), Gaps = 28/286 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128
           K ++++Y +       L  ++  +++    Q +       +D +K +     + +     
Sbjct: 7   KEIVNQYLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYDIQKESLHAYITHLHKTYQ 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------------RPW 174
            P +  + + S+  LF + V  +++  NP   +    R+   +              R +
Sbjct: 67  KPKTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFSRVY 126

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTI 232
            +    +        ++     E L  +G+R S+ C      +      ++         
Sbjct: 127 DEMKDCKTSYQRKVCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKGAKER 186

Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
           I        +K+L       +        FFIN     ++     +          +   
Sbjct: 187 ILQIGNPDVLKILYSYRALFQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKILKIPQH 246

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H  R   AT   +       +    G  ++   + YT  +   
Sbjct: 247 LTPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNK 292


>gi|327439442|dbj|BAK15807.1| integrase [Solibacillus silvestris StLB046]
          Length = 363

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 40/356 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V K++ R+    Y+  + +G++++              + L       +          +
Sbjct: 3   VYKDKERN--TYYFITRINGKQVKRRGFKTKKEALLAEAQLENEGNVEQI--------IS 52

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
            +++  EY K         +S     S     +           I  + I    +     
Sbjct: 53  FEFIADEYMKWYKTRR-KESSFKKLRSVITVHLKPYFKKKALHTIRQRDIIKFHDHLIET 111

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K + ++A +    +  LF +A++ EY   NP   V   + K      +   D  +     
Sbjct: 112 KLSAATAKKIHQILSALFNFAIKNEYTKDNPARVVGNIEMKENKHMNYWTLDEFKAFIKQ 171

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------KTQKTGTIIT 234
            +       F  L YSG+R  +        +     +I             T+   +   
Sbjct: 172 VDNIVYHTLFMTLYYSGMRTGELVALTWSDIDFTNNTINVNKTLAGTKITTTKTESSTRI 231

Query: 235 VELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           + +P+  M LL                          + M+ T     ++     + V +
Sbjct: 232 ITMPNHIMHLLGKLKLHQASKYGFEPKMNYCVFGKFTRYMSKTALDNNYRKYIELSDVKR 291

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
              H  R   A+   + G     + A  G   V    +TY+       +  + +  
Sbjct: 292 IRLHDFRHSHASYLINKGVIISVVAARLGHANVSMTLDTYSHLYPSTEKEAVAHME 347


>gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu]
          Length = 315

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 86/275 (31%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH-TPSSA 133
           + +      LA N+  ++        +      D          +   + +R     +S+
Sbjct: 35  WLEH----GLARNTLDAYRRDLALFAQWLAATHDASLDVADEMMVTGYIAARSDGKATSS 90

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L+  R  + WAVR+   + +P L +   K+        ++  ++         +   
Sbjct: 91  NRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVDTPLG 150

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 151 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 210

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 211 LRHARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATH 270

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 271 LLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERL 304


>gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
 gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 311

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 86/284 (30%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            + ++ A    L+ ++  ++E    Q +    G         D R++     R+ + +R+
Sbjct: 18  AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDIRELRPADFRAFLAARR 77

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
              S A    + L  +R L +   ++  V      ++  PK+     +P +         
Sbjct: 78  KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVS 137

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
              Q        ++       L   GLR S++       L     +++          V 
Sbjct: 138 NEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPKGATTLRITGKGNKTRLVP 197

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287
           L     + +            N+      A              +   +  G+    + H
Sbjct: 198 LLPVVFEAVEKYRALCPYHLENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
 gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193]
          Length = 328

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 100/309 (32%), Gaps = 42/309 (13%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESR 126
             IS +  +       A N+ +++              D  + +   + I +      + 
Sbjct: 9   QWISTFLDAQAAELGAARNTLLAYGRDLKDAASWLAHHDNRFSEAAREDIEAYLISCNAE 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             + ++  + L+++R L+ +A  + + + NP + ++ P R     +     ++ +     
Sbjct: 69  GLSRATRARRLSALRQLYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLEVIEVDRLLDAA 128

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                  ++  +     E L  +G+R S+     V   + +   +    K G    V L 
Sbjct: 129 RQTGRKPADRLRNTCLMELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLS 188

Query: 239 DGFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV 282
               + L    + ++                 F     +  +    F +  K  A   GV
Sbjct: 189 PPAREALRAWLMQRDEADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGV 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    + H +R   AT     GA    + A  G   +   E YT   D          R+
Sbjct: 249 DPKKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD---------ARL 299

Query: 340 SSVVDSDDP 348
           S +V    P
Sbjct: 300 SELVLQHHP 308


>gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC
 gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 306

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 22/281 (7%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMR 141
           + ++  +++     +                  T + I +    +     S    L ++R
Sbjct: 26  SQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLVALR 85

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEF 198
             F + +RQE +++NP + ++ PK      +    E + Q  +         +     E 
Sbjct: 86  QWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAMMEL 145

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +  SGLR S+     +  +      ++   K      V +    ++ L      +  F  
Sbjct: 146 MYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQFKP 205

Query: 258 NNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
            ++         +++     +  +    K G+  +   H +R   AT   +A      + 
Sbjct: 206 QDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLRAVQ 265

Query: 309 ATYGWKTVDQAETYTKGADRIRLG--IKNSRRISSVVDSDD 347
              G   +   + YT   D   L      +   +     DD
Sbjct: 266 ELLGHSNLATTQIYTH-LDFQHLAKIYDAAHPRAKRKKQDD 305


>gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
 gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1]
          Length = 290

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 85/273 (31%), Gaps = 14/273 (5%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128
           I  + +        A N+ +++ +        +       +       +   +      +
Sbjct: 5   IESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPLHADEAALRGYLAAQSGAGN 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +  + L+++R  +++ + Q   + +P   ++ PK      +   + ++         
Sbjct: 65  GPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAEVDALLQAAPA 124

Query: 189 GSQPRLAFEFLLYSGLRCS-----DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 A E L  +GLR S      +           +     ++    ++         
Sbjct: 125 EPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRERMVPVSAAAISAVAA 184

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
           + +     +  F   +  + M    F++  K  A +AG++    S H +R   A+     
Sbjct: 185 MRSGAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLDPARVSPHVLRHCFASHLLAR 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GA    L    G   +   + YT         +
Sbjct: 245 GADLRSLQMLLGHVDIATTQIYTHVLSERLRAL 277


>gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498]
          Length = 321

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 83/277 (29%), Gaps = 30/277 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK- 127
           +         +A+++ +++E    Q      +  G          +    +R+ +  R+ 
Sbjct: 28  WLDHLTQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRAYLAYRRT 87

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178
              +  S  + + S+R  F +  R++ V +     V  PK      +P T        ++
Sbjct: 88  QNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIESALRIVKE 147

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
             Q ++     ++       L   G+R S++     +   +          K G    + 
Sbjct: 148 ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVNGKGGKTRLIP 207

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287
           L     K +           +N            +         +    + G+ ++   H
Sbjct: 208 LIPIVHKAIENYLKCCPYPLVNTQPIFLGVRGKPLQPAIIQRTVQNLRARLGLPETTTPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     G     +    G   +   + YT 
Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTH 304


>gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17]
 gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17]
          Length = 293

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 84/275 (30%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           I ++     +  + +  +  S+               G   +  + +  IR  +ES    
Sbjct: 3   IEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMDK 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               +S  + L+++R  +++A+ +E V  +P   V  PK+K    +   + ++       
Sbjct: 63  GNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDSD 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
                 +  + R        +G+R S+        +         T K      +     
Sbjct: 123 MWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQRIIPFGAE 182

Query: 241 FMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
               LA                FF+ +    M   Q     K   ++      ++ H +R
Sbjct: 183 LAHTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLKKRTPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    L    G   +   E YT  
Sbjct: 243 HTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHT 277


>gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5]
 gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5]
          Length = 278

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 28/283 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG 122
            KP  ++ L+  Y         + N+  ++ S      + +  +G  D        I   
Sbjct: 6   AKPEDIRALVENYLGVVKALR-SHNTYKTYASVLFAYAKFVEDTGKPDPA----AFISWL 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            ++     +S       +R   K+A     +              TE +R          
Sbjct: 61  EKNGWEKRTSIRTAYVVLRGFHKFAGLPWTLPPVKKPESVPKALGTEDVRKL-------- 112

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R    FLL +GLR S+   +  + +              K   +  V L 
Sbjct: 113 --LSVASPAEREVIVFLLKTGLRVSEFVHSRCEDVLVVGDGRYMLRVRGKGDKVRLVPLT 170

Query: 239 DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
              ++++     G          +  + ++A          A +AG+   + H +R   A
Sbjct: 171 KDVVEIIKARCTGRAGYIFPSPLDPDKPVSARSIQHLVSRVARRAGLQRVTPHTLRHTYA 230

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           T+  + G     +    G   +   + YTK  D  R+ +    
Sbjct: 231 TLLLNNGVDIRTIQTLLGHAQLTTTQVYTK-VDVARM-VDAID 271


>gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
 gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC
 gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 97/295 (32%), Gaps = 30/295 (10%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK----SGD-FDYRKITTKHIRSGVESRK- 127
           I  +R       +L+ ++  +++    Q         GD      +    +R  +     
Sbjct: 8   IRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLLLRRYLAQLGT 67

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS  + L ++R  ++  +R   V+ NP   +  PKR+         +         
Sbjct: 68  QIRKSSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQATALMETP 127

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
           +E    G + R   E L  SGLR S+     ++ +      ++    G     V L    
Sbjct: 128 TEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGKGGKERIVPLGSRA 187

Query: 242 MKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFS 293
           ++ +      +         F+N+   ++N    +    A      A  + S H +R   
Sbjct: 188 VRAIQEYLDSRGGGTATAPLFLNSRGDRINRRSVARIVDAHVHEIAAFKHISPHTLRHTF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    +    G  ++   + YT  +           R+  V D   P
Sbjct: 248 ATHMLEGGADLRAIQELLGHASLSTTQKYTHVS---------LDRLMEVYDKAHP 293


>gi|288959362|ref|YP_003449703.1| phage integrase [Azospirillum sp. B510]
 gi|288911670|dbj|BAI73159.1| phage integrase [Azospirillum sp. B510]
          Length = 418

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 100/360 (27%), Gaps = 28/360 (7%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKRE 59
                + T  G K      +  GR          R   P            L  S  +  
Sbjct: 30  KGFVLKVTPSGAKTYLVVYRMGGRDTPKQKVTIGRHGSPWTPDKARTEAEKLLASVKRGT 89

Query: 60  YINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
              + +K  T    T+  L  +Y           ++   F    ++ I    G     K+
Sbjct: 90  DPAAEKKARTKRGATVADLADDYLTQHVDVKNKPSTATGFRRLVEKEIKPPLGKLQVDKV 149

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T   I       + TP  A Q L  +  +F  A              +  + +      +
Sbjct: 150 TRADIAKLHHDMRDTPRQANQTLAVLSKMFSLAEVWGLRPDGTNPCKKIERYRENKRERF 209

Query: 175 TKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 +                     A   LL +G R  +        + +    I+ 
Sbjct: 210 LSVPEVERLGKALAELGETMEVHETILSAIRLLLLTGCRVGEVLALRWVDVVDGAVLIRD 269

Query: 227 QKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
            K G  +          L               + +  +  T  S  ++   +KAG+ + 
Sbjct: 270 AKAGGRVHPIGALAQAFLSELPRESEWVLPAPRSPRNPLPNTTISHGWEVVRSKAGLEDV 329

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSVV 343
             H +R    T +  AGA A  +    G KT+     Y  + AD IR   + S +I   +
Sbjct: 330 RLHDLRHTVGTYAGQAGANAFLVRDKLGHKTLAMTGRYVNRDADPIR---ELSDKIEGRI 386


>gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 405

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 83/269 (30%), Gaps = 10/269 (3%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126
           P + K L+  Y        L+  +   + ++  Q +    +     +  +  R+ +E   
Sbjct: 106 PQSHKALLKRYVHYLKGQRLSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAFIEEVI 165

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S       +  L K               ++RPK+  +     +++++       
Sbjct: 166 AFRRYSISSHRQCISAL-KHLSILLEFPKAHFDGLQRPKKDKKLPVVLSRKEVIDLLRAT 224

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
               + R     L  +GLR  +        +        IK  K     TV+L    + L
Sbjct: 225 -PNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283

Query: 245 LAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           L                 D Q  +A     + K   T+AG+ K  + H +R   AT   D
Sbjct: 284 LLNYMESYAPTHYLIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHSYATHMMD 343

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
            G     +    G    +    YT  + +
Sbjct: 344 HGVALRHIQELLGHAKPETTMIYTHVSQQ 372


>gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 304

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           ++ Y         L+ ++  ++    + +    G+      +  I T HIR  V      
Sbjct: 10  VNAYLDELAGQRRLSPHTVSNYRHDLETLCALIGELPSDSGFAAIETHHIRRFVAILHTR 69

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L++ R  ++W V++    +NP  SV  PK      +  + ++  +  +  
Sbjct: 70  GLGGRSLGRTLSAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEANRLLAAQ 129

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF 241
           SE     + +  FE    SGLR ++     +  L++          K   +  V +    
Sbjct: 130 SENLLEIRDQAIFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRIVPVGSQA 189

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
            + +A+    +           F+    +++      +    +    G+      H +R 
Sbjct: 190 REAVALWAGQRACLAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLPARVHPHMLRH 249

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A+    +      +    G  ++   + YT   D   L  
Sbjct: 250 SFASHVLQSSGDLRAVQEMLGHASIASTQVYTH-LDFQHLAA 290


>gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 347

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120
           + E+         ++ ++  ++      ++  +G+              D  ++ + H+R
Sbjct: 46  VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 105

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    +
Sbjct: 106 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 165

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 166 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 225

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 226 LVPVGSHAIAALRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHP 285

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 286 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 330


>gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 374

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%)

Query: 35  LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +     AY   SAL  + PK+    SP   P         Y ++      + ++ 
Sbjct: 59  LSGFFDRHVETAYIDYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTV 110

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ +YF +  +     + R I  + I + +    ++R  +       + S++  F    
Sbjct: 111 RAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 166

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +       C  V+R KR+       +KE+++          +    F  L  +GLR S+
Sbjct: 167 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 226

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263
                   +  +     ++  K        L    ++ L         +E  F     + 
Sbjct: 227 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 286

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  S   K  A +AG+ K    H +R   AT   + G     +    G   +   E 
Sbjct: 287 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 346

Query: 322 YTKGAD 327
           Y   AD
Sbjct: 347 YVHIAD 352


>gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 267

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 18/233 (7%)

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             + + +      +  +S+ + L++MR  F+   R++Y   +P   +  PK      +  
Sbjct: 23  DLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDL 82

Query: 175 TKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
           ++  +++             + +   E L  +GLR S+     +  +      ++     
Sbjct: 83  SEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 142

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
                V L +  +  L         +          F +   Q+M    F    K  A  
Sbjct: 143 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 202

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AG++    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 203 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 255


>gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 404

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 113/373 (30%), Gaps = 40/373 (10%)

Query: 6   RLPPFVTKERTRHG-KIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + PP   + R   G K  Y +       G+R +       T   A  +A+   +      
Sbjct: 36  KCPP--ERRRCTCGAKWYYRYDITDPKTGKRKQKEVGGFRTKEEAQEAAVRIQSELLN-G 92

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                   T+   + ++ ++     +A N+     ++    I    G      +T  H++
Sbjct: 93  TYVEPTKLTVGEFLLDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQ 152

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTK 176
               S +  +           +   F  AV+   ++ NP   V++P    +   ++ WT 
Sbjct: 153 KFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTV 212

Query: 177 EDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGT 231
           ED ++F  +  +G +   + F   L SG+R  +        +                  
Sbjct: 213 EDQRKFLDYAKDGPKLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQR 272

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------------KMNATQFSIW 272
            + ++        +    + + T  +    +                    +        
Sbjct: 273 KLYLKDMPKTESAIRTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQ 332

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                  AGV   + HG+R   AT    +      +    G  T+     TY+       
Sbjct: 333 LAKTIKGAGVPEITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPN-- 390

Query: 331 LGIKNSRRISSVV 343
           +    + ++ +V+
Sbjct: 391 MQKDAASQLGAVL 403


>gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
 gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 88/294 (29%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y  +      L+ ++   +    +++   +       +T   IR  V    
Sbjct: 1   MTAADPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLTAVDIRGAVSRAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLME 120

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------K 228
                  EG +     E    SGLR ++      +    + +                 K
Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKA 280
                 V +    ++ L      ++    ++           +++        K  A  A
Sbjct: 181 GNRRRVVPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293


>gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 369

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 118/352 (33%), Gaps = 37/352 (10%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++   G        G    G+R R+      T   A +        +     SP      
Sbjct: 5   KQLAKGNWKVTVSLGYGNDGKRQRVIKQGFKTKKDAEIFVTETLNQRNRGYISPSASNML 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----S 125
            K  I+++       ++ +N+R+ ++S     II   G++   +ITT  I+         
Sbjct: 65  FKDFITKWYTEYKQFNIGINTRVGYQSRIKTHIIPMLGNYKLNEITTPIIQDFYNIMISE 124

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K  P++  + +  +   FK+A + + +   P    ++ K +   I+ W K+ +Q F + 
Sbjct: 125 KKLKPATVKKSMDILISCFKYAKKNKLIYELPTEIEKQ-KIEKPKIKVWNKDHVQLFLNK 183

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229
             +G+         + +GLR S+ C      +  +   +                     
Sbjct: 184 I-KGTYLYTPIFIDVLTGLRLSELCGLRWCDVDLDNGYLTVNHQLIYDAITRTLLLGGLK 242

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAG- 281
              +   + +P   +  L      ++    +      +  K      S+ F  K  K   
Sbjct: 243 TESSHRKISIPTILINYLKELKEYRKAEKNDYLVLDRNDFKYTPKSLSMNFTKKIAKYKE 302

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + HG+R   ATI    G     +    G   +     TYT   + ++
Sbjct: 303 QLPQITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYTHVMEDMK 354


>gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
 gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC
           29176]
          Length = 377

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 101/367 (27%), Gaps = 44/367 (11%)

Query: 14  ERTRHGKIIYYFRKG--HGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKP 68
            + + G+    ++KG    ++I+  Y +             A          ++    + 
Sbjct: 8   YKRKDGRWEGRYKKGYDKNKKIKYGYCYGHSYRETKEKVTRAKIELMLNSPPVSKDIYRK 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
                   ++ K      L  ++   +     + I  + GD+ +  + +  I    +   
Sbjct: 68  R-FSEYCVQWIKINESR-LKKSTLAKYHFMLENHIKPQLGDYSFTDLNSDIIADFSKDLL 125

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K +P +    LT +  +  +   +    ++          + E      +E     +
Sbjct: 126 YQKKLSPKTVRDILTFVHKIISYIQAETNSNLSSITISYPRLERKELRVLSAEEQQNLIQ 185

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +    + +    L++GLR  + C    + +      +  + T   I     D   K
Sbjct: 186 YLVQDFDIYKFSVLIALFTGLRIGEVCALQWKDISVESGLLTVRHTVQRIKNPDSDSAKK 245

Query: 244 LLA--------------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            L                                 E F +  + Q ++        K   
Sbjct: 246 TLLQLGTPKTFSSARTLPVTNGLQKLFKLFQHDDPEAFILTGNHQFIDPRNLQRKLKKYT 305

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
              G+ +   H +R   AT   + G     L    G   +      Y     D  R   +
Sbjct: 306 KDLGIQDVHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKR---E 362

Query: 335 NSRRISS 341
           N  ++  
Sbjct: 363 NILKLEQ 369


>gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae
           WSM419]
 gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 31/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128
           +  + +        AVN+  S+E               G  D      +   S +     
Sbjct: 9   LEAFLEMMSAERGAAVNTLQSYERDLRDARSFLRSRGVGLVDASADDLRSYLSHLTGEGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L+++R  +K+   +      P   ++ PK+     +  + ED+ +       
Sbjct: 69  KSSSQARRLSALRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLIGQAET 128

Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKT 226
                        +     E L  +G+R S+        L             N   +  
Sbjct: 129 EAEKGGEDAVAKLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKGNKERLVP 188

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                I  +      +   A        F        +    F+   K+ A +AG+    
Sbjct: 189 LSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAARAGIRVAA 248

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 294


>gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
 gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 315

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 23/263 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLTS 139
            +A NS  ++    +Q +       +  +    ++      KH        S+  + L +
Sbjct: 37  GMAENSVKAYIRDLEQFLDWLKKKHWHDVRELTLQQLTAYLKHLHDEGLKASTVARKLVA 96

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195
           ++  F++ V +  +  +    +  PK      +  + E +               + R  
Sbjct: 97  LKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEKVDALLTAPSWEDEFPHRDRAI 156

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
              L  +G R S+     +  ++ +    K +        V L    +  L         
Sbjct: 157 LSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNPVAIAALETYLQRERP 216

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                  +   F++   + ++        K  A + G     S H +R   AT     GA
Sbjct: 217 ALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSPHTLRHSFATHMLAGGA 276

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               L    G   +   + YT  
Sbjct: 277 EIRALQEMLGHANIRTTQVYTHV 299


>gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
 gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family
           [Phascolarctobacterium sp. YIT 12067]
          Length = 378

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 108/379 (28%), Gaps = 59/379 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHEST-----FIPAYMSALTGSTPK-----REYINS 63
            + + G+         GR I+             +  +Y         +           
Sbjct: 9   YKRKDGRW-------EGRYIKSRSSTGKANYGYVYAKSYREVKAKLISQSSCTSNSVTVD 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P       + +  E+ ++     +  ++   + +     I+   G    R IT + I + 
Sbjct: 62  PEISSDQFEQVAMEWFQAICPK-VKESTSNKYRNLLSSYILPVFGSKQLRDITHEFIETQ 120

Query: 123 VE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +  +    L+ +R + ++A R          S++  ++  E    
Sbjct: 121 CNFFLVSGGLKENGLSSKTVSDILSLIRNVLQFATRNGKAISCDARSIQIKRQTKEMRVL 180

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              E  +  +  +S      +     L++GLR  + C    + +  + ++I   +T   I
Sbjct: 181 SRAEQEKLCQYLYSNLDSCNIGILVCLFTGLRVGEICALRWEDVSFSDYTIHVHQTLQRI 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND-------------------------KQKMNATQ 268
                  +   + +T                                     +  +    
Sbjct: 241 QDRTNSEYKTRIVVTTPKSACSIRTIPVPHGLMTILTAHKASSTGYILTNSDQNPLEPRT 300

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
               FK     +G+   + H +R   AT   + G     L    G  +V+     Y    
Sbjct: 301 MQNHFKKVLKNSGITSANYHSLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPS 360

Query: 326 ADRIRLGIKNSRRISSVVD 344
            D  R   +N +R+S ++ 
Sbjct: 361 MDLKR---ENMQRLSDLLA 376


>gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 343

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 89/286 (31%), Gaps = 30/286 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132
              Y  S      + ++R +++    Q      D        +   +R  +  +     +
Sbjct: 19  FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 76

Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               + L+++R L+++ VR+     NP  +V  PKR         +E++          +
Sbjct: 77  VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAT 136

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
                 + R   E L  SGLR S+     ++ L      ++   K      V        
Sbjct: 137 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAD 196

Query: 244 LLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            L                     +  F+N    ++ +   +         +G+ +    H
Sbjct: 197 ALRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 257 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301


>gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
 gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109]
          Length = 310

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK--HTPSSAIQFLT 138
            SLA ++  ++ S   Q +             ++T + +R+ +  R   +  +S  + L 
Sbjct: 28  RSLAAHTVRNYLSDIGQFMEFWNYRRPGHSLGELTYQDLRAFLAERHRLNCKTSIARKLA 87

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194
           ++R   K+  RQ  ++ N       PK +    +  T +++               + R 
Sbjct: 88  ALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLEQTWGQTVLAVRDRA 147

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT----- 248
             E     GLR ++     + +L      +    K G    V +    ++ L        
Sbjct: 148 ILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERLVIIGRQALQTLNSYLLVRR 207

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                     G+E  F+N    ++ +   +   +  A KAG+    S HG+R   AT   
Sbjct: 208 ELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAGLGQPLSPHGLRHTFATHLL 267

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           +  A    +    G   +   + Y   
Sbjct: 268 EGKADLRAVQELLGHAQLSTTQKYLHV 294


>gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 309

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 30/305 (9%)

Query: 69  TTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRS 121
            T +     + EY K       +  +  ++ S FD  I    D     D+ +++ + IR 
Sbjct: 1   MTFESYRKRLKEYIKDEKH--YSDQTLKAYLSDFDDFISFLRDELLISDFEQLSYRDIRL 58

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +   +    S     + L+S+R  F   + Q  V  NP   V+  K        + + +
Sbjct: 59  YLSHLQRKGLSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAE 118

Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           +           +   +     EFL  +G R S+     +  +           K     
Sbjct: 119 LDPLFEAAKGPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKDR 178

Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--G 281
            V       K L                 E  F+N+  + +  +  +        K+   
Sbjct: 179 YVPFGSYCKKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSASN 238

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           ++   H +R   AT   + GA    +    G  ++   + YT    +  L     +    
Sbjct: 239 LDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTH-MSKESLRNNYLKYFPR 297

Query: 342 VVDSD 346
              SD
Sbjct: 298 AKHSD 302


>gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
 gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1]
          Length = 308

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 31/291 (10%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITT 116
             P T     + +          +  +  ++      Y   + R  G+     D   +T 
Sbjct: 2   AAPLTAFDARAAWLGRLEHERRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTA 61

Query: 117 KHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +R+ +   +      +P S  Q L+++R   ++  R+  +       V  P+ K    
Sbjct: 62  GEVRAWLAHLRSGETPLSPRSLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAP 121

Query: 172 RPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           RP +++                  E ++ +     L   GLR S++              
Sbjct: 122 RPVSEDQAIGLIAEPAFDPDREGWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQL 181

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAK 276
             T K      V +     + +                 F       ++        +  
Sbjct: 182 RITGKGAKTRIVPVLPAVREAVDAYLTQVPFGLAPDEPLFRAKRGGPLSPRHVQATVQQL 241

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             + G+    + H +R   AT    AGA    +    G  ++   + YT+ 
Sbjct: 242 RGRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEV 292


>gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 330

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
           L+ E+    +   + + N+  ++       +R                + D   +    I
Sbjct: 20  LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLI 79

Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
            S                R +TP +  + + S+R  + +  ++ + ++ NP   +E PK 
Sbjct: 80  ESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139

Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                   T ++ ++  +        +        L  GLR S+     +  ++++  + 
Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276
              K     TV L D  +  +      +    + + K        ++++        K  
Sbjct: 199 VIGKGNKQRTVYLNDACIDAINTYLEVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
              A +     SAH +R  +AT+    G      L    G   V   + YT   D +++ 
Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318

Query: 332 GIK 334
            + 
Sbjct: 319 AVN 321


>gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 292

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 89/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++ +  +  +I+          V      +  L+     +++   
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLSRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
 gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216]
          Length = 368

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++    +  + +         + R K         +K ++++         +  
Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
                +  +GLR S+      Q + +   S++            L    ++ L       
Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271

Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306
                        ++ +A+      K  A +AG+    H   +R   AT   + G   H 
Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G   +     Y   +   +
Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355


>gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 25/271 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----------ESRKHTPSSAIQFL 137
           A N+R ++E    Q         ++++T K + +              +   P+S   F+
Sbjct: 34  AANTRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSKKPLAPASVAAFI 93

Query: 138 TSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPR 193
           T +R  +KW        +           P +        TK ++ +       +  +  
Sbjct: 94  TPLRSFYKWGSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQSLRNY 153

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLLAM 247
           L    L+  GLR S+           +        +I   K G    +++P    KL   
Sbjct: 154 LIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKALWKLYTE 213

Query: 248 TPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                        N     ++  Q     K+   ++G+    + H +R  +AT++   GA
Sbjct: 214 HAETLSESANPHANLQLFPISVRQIERIIKSAGIQSGIVKKLTPHWLRHTNATLALLQGA 273

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +  ++  T G   ++  + Y    ++++   
Sbjct: 274 SLQQVQETLGHSHINTTQRYLHTVEQMKKAA 304


>gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 342

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 18/325 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGS 86
            +G+R R     +     AY   +  +   +E++  P  K   L  LI   + KS     
Sbjct: 19  RNGKRFR-RKFDKKAEALAYEKHILSTHHNKEWLGLPVDKRN-LSELIDIWWIKSGQLK- 75

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVL 143
               +  ++    + I R+ GD     I    I +    R      A       + +  +
Sbjct: 76  ---RTATNYRQKLELICRELGDPTVNNIDATLINNWQLERMAKGQKANTVRRLSSCLSNV 132

Query: 144 FKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F   +   ++   +P   +++P  +   +   T    Q    +     +     E  L +
Sbjct: 133 FSVLIETGDFTGAHPLRGLKKPTPEKSEMTYLTLMQAQCLLDYLKNDWELLKIVEVSLAT 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  ++      +L          KTG   TV +       +     GK          
Sbjct: 193 GSRWRETVTLKSSNLSPYRIRFTNTKTGKPRTVPISKQLYDDIYPEIGGKLFSEDPQ--- 249

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +    F          +  H +R   A+     G     L    G  +++Q  TY
Sbjct: 250 ----KRLVKVFNELKFDLPKGQKVHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTY 305

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
              A    +       +S + D  +
Sbjct: 306 AHLAPDHLVDAIKLNPLSKLRDPQN 330


>gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 338

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
            K  I  +     +   L+  +  ++     Q    +      +++ + + + +E     
Sbjct: 40  FKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-----SELSKQSLWNYIEHLNKS 94

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------------RPKRKTEGIRPWT 175
           + P +  + L +++    + + ++ +  NP   +E             P      I  + 
Sbjct: 95  YKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILCFA 154

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GT 231
              +++  + + + S  R A    L   +G R ++ C    Q +     S+K        
Sbjct: 155 YTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGSKE 214

Query: 232 IITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
            I        + +L+      E        FF+N   +++          +     G+  
Sbjct: 215 RIIPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCGISM 274

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + + H  R   AT+  +       +    G  ++   + YT      
Sbjct: 275 HITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAK 321


>gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 294

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           I  +        + +  + IS+    +   R   + D    +  + T  +R  +E     
Sbjct: 4   IDMFLDYLRLERNYSPMTVISYRKDLEAFERFCQELDPQITWESVDTDVVRDWMEDMMDK 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               SS  + ++++R  +++A+R   V+ +P   ++ P+R+    +   + +M+Q     
Sbjct: 64  GNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPA 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             +   E    R        +G+R S+      + + +       T K      +     
Sbjct: 124 MWTDGYEDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKE 183

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + LA     ++          F     +++   Q     K   +K      ++ H +R
Sbjct: 184 LEETLAAYRCVRDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKKRTPHVLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 278


>gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6]
 gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6]
          Length = 294

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 94/273 (34%), Gaps = 24/273 (8%)

Query: 75  ISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP 130
           I ++  S       + ++  ++ +  +Q+       +      +T   I + + S +   
Sbjct: 5   IEQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLAAREVADWQAVTHDDILAFMISLRERG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
              S+  +   +M+  F + + Q+ +  +P   ++ PK   +  +  T+ DM +      
Sbjct: 65  YAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELLELPL 124

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
                E  + +   E L  +G+R S+     +  +  +  +++ +        + +    
Sbjct: 125 RSSGPESLRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRERVLPIGLTA 184

Query: 242 MKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV-NKSAHGVR 290
              L           + + +  +              F +  K  A + G+ + + H +R
Sbjct: 185 TTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLHDLTPHTLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              A      GA   E+    G  ++   + YT
Sbjct: 245 HSFAAHLVYEGADLREVQERLGHASLSTTQIYT 277


>gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium]
          Length = 311

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 87/282 (30%), Gaps = 29/282 (10%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSS 132
             +          +  +  ++     +          D   + +  I   + S +    +
Sbjct: 8   ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKA 67

Query: 133 AI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           A    +   ++R++ ++ + +     NP   V+  K  +   +  +++++ +  +     
Sbjct: 68  AKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGV 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244
            S   + R   EFL  +G R S++C   +  L      ++   K      V         
Sbjct: 128 DSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAA 187

Query: 245 LAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKA--GVNKSA 286
           L           + +++                 +++        +  A  A  G   S 
Sbjct: 188 LEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVSP 247

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   AT     GA    +    G  +V   + YT+  + 
Sbjct: 248 HVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNE 289


>gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 362

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLINLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L     T       F +     M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILLELRETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f]
 gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f]
          Length = 368

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 15/264 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S  
Sbjct: 96  YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQ 155

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++    +  + +         + R K         +K ++++         +  
Sbjct: 156 NMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSKNEIKRIL-AQISNIKHH 211

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
                +  +GLR S+      Q + +   S++            L    ++ L       
Sbjct: 212 CMISLVYSAGLRRSELLNLTPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREY 271

Query: 253 ETFFINN----DKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATAHE 306
                        ++ +A+      K  A +AG+    H   +R   AT   + G   H 
Sbjct: 272 RPQKWLFEGETPGEQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHT 331

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G   +     Y   +   +
Sbjct: 332 IQELLGHNDIKTTTIYLHVSSAHK 355


>gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
 gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702]
          Length = 338

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
            K  I  +     +   L+  +  ++     Q    +      +++ + + + +E     
Sbjct: 40  FKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFT-----SELSKQSLWNYIEHLNKS 94

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------------RPKRKTEGIRPWT 175
           + P +  + L +++    + + ++ +  NP   +E             P      I  + 
Sbjct: 95  YKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILCFA 154

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GT 231
              +++  + + + S  R A    L   +G R ++ C    Q +     S+K        
Sbjct: 155 YTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGSKE 214

Query: 232 IITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
            I        + +L+      E        FF+N   +++          +     G+  
Sbjct: 215 RIIPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCGISM 274

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + + H  R   AT+  +       +    G  ++   + YT      
Sbjct: 275 HITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAK 321


>gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3]
          Length = 331

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 100/318 (31%), Gaps = 53/318 (16%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E     +    G       +          + + ++  
Sbjct: 14  LESFLEMMSAERGAAANTLSSYERDLSDLREFLGGRGQSLMEAATADLSAYLTHLSTQGF 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+SMR  +++   +     +P  +++ PK+     +  +  D+ +     +E
Sbjct: 74  AATSQARRLSSMRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLLGIAAE 133

Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            +           +  L  E L  +G+R S+     V+ L+      +   K      V 
Sbjct: 134 EAALTGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVL 193

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------------TQFSIWF 273
           L    ++ +      +++      +   +                          F+   
Sbjct: 194 LSRAAIEAMEKYDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLPRQVFARDL 253

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K  A +AG+N    S H +R   A+     GA    +    G   +   + YT   +   
Sbjct: 254 KDIAIRAGLNPSAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEE-- 311

Query: 331 LGIKNSRRISSVVDSDDP 348
                  R+  +V +  P
Sbjct: 312 -------RLQELVQTHHP 322


>gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68]
 gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68]
          Length = 382

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 118/370 (31%), Gaps = 48/370 (12%)

Query: 13  KERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + + ++G+ ++ F+         G+++R       T   A   ALT    + E     + 
Sbjct: 6   QYKKKNGEKLWKFQTYLGVDPLTGKQVRTTRRGFKTKKEA-QLALTKLQLEYESNGLNKS 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  T + +   +  +        +   + E + + I+   G     KI+    +     +
Sbjct: 65  KELTFQEVYDLWIVNYEQTVKESSFVKTKEQFANHILPAFGALKINKISIDIAQKFANEK 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                   +F+ +   +  +A++  Y+  NP   +  PKRK       T     + +   
Sbjct: 125 VKKFVLYREFINNASRICDYAIKLGYLQDNPFKKITVPKRKVSVHEEDTLNFFNKEELEI 184

Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                      +    F  L ++G+R  +      + +  N   IK  KT          
Sbjct: 185 FLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLY 244

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269
                       + + D  M +L    + +  + +      ++  Q              
Sbjct: 245 VEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLS 304

Query: 270 --SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
               W +    +  + + + HG+R   A++  +AGA   ++    G  ++      Y   
Sbjct: 305 KPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHI 364

Query: 326 ADRIRLGIKN 335
            D+ +     
Sbjct: 365 TDKRKEKTAA 374


>gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 365

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 102/333 (30%), Gaps = 29/333 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +T +    G   Y  R       +     +             S    +   +P +   T
Sbjct: 5   ITVDVLSDGSKRYRSRYRDAGGRQHEKRFQRRVDAQRWLDEQTSAIVTQTWTAPERGRVT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
           ++    ++  +     L  ++   + S    QI+ + G      IT   + + V      
Sbjct: 65  VEAWAEQWLAAQ--TGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQLVAG 122

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +  Q    + ++   AVR   +  NP   V  P+ +    R  T+E++++     
Sbjct: 123 GLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRTRRADPRFLTREEVERLADAA 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------TV 235
            E          L Y+GLR  +     V+ +      +   ++ T +             
Sbjct: 183 GEYGD---VVRLLAYTGLRFGEMAALRVRRVDFLRRRLTVAESATEVGGTVEYGTPKTHQ 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------SIWFKAKATKAGV-NKSA 286
           +       +L      +      +D    +              +F   A  AG+ + S 
Sbjct: 240 QRTVPIPAVLVEPLSRRCGGKGRDDLVLTSPGGAVLRSGNFRRRFFDPAAKAAGLEDLSP 299

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R  +A++   +GA    +    G  +    
Sbjct: 300 HDLRHTAASLLVASGANVKAVQRMLGHASAAMT 332


>gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
 gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B]
          Length = 304

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 23/280 (8%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG- 122
             +L   IS++         ++ ++  ++    +              R I    +RS  
Sbjct: 2   TLSLGASISDFLDYQRDVRRMSHHTVSNYRRDLNHFEEFCRASNCTSPRDIKESVVRSWA 61

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++ +   P++  + L+S+R  FK    +     NP + +  P+R  +  +    + + 
Sbjct: 62  GQMQRQGKAPATIQRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIG 121

Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVE 236
                 +E +   + +   E L  SGLR ++     ++ L         T K     TV 
Sbjct: 122 ALFQRPAESTLEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATK--AGVNK 284
           +    +K L      +               N    ++         K  A     G N 
Sbjct: 182 VGVAALKALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNL 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   AT   ++      +    G   +   + YT 
Sbjct: 242 HPHMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTH 281


>gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
 gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9]
          Length = 295

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  ++  +         +  ++     +I +   D     +TT  ++    S    H+ S
Sbjct: 12  LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + +E+  ++       P +  +     T + +       ++  +
Sbjct: 71  TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
            ++ F  L   GLR  +     V  +  +     I+  K G    V +P   +  L    
Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185

Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +              N    M+        K      G+NK  S H +R   AT   + G
Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQG 245

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343
                L    G  +++    YT+    + R       R++  +
Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288


>gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 306

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKH 118
           P T   L++ Y +       L+ ++  ++      ++   G              +    
Sbjct: 2   PRTRADLLAAYHRYLSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLAD 61

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  + +     H+ ++  +   S+R    WA  +  +  +    +  P+         T
Sbjct: 62  LRDWLAALAASGHSRATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLT 121

Query: 176 KEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +   Q                 +     E L  +G+R S+     V  L ++  +++  
Sbjct: 122 AQQAAQLLQTAADLAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVL 181

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKA 277
            K     TV       + L      +E     +           ++++            
Sbjct: 182 GKGRKERTVPYGLPAARALEGWLSRREEICAPDAGTALFLGARGRRIDPRAARDIVHRLC 241

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
             AGV     HG+R  +AT     GA    +    G  ++   + YT   A+R+R   + 
Sbjct: 242 AAAGVPDLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQ 301

Query: 336 S 336
           +
Sbjct: 302 A 302


>gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 291

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 21/261 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139
             L+ N+  ++ +            +   + +    I   +   K    +P S  +   +
Sbjct: 14  RQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSPKSVFRKTQA 73

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196
           ++  +K+ +    +  +PC  +  PK   +     TKE++ +            +     
Sbjct: 74  VKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTIL 133

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E     GLR S+     ++ +      +    K      + + D  +K+L +    +E +
Sbjct: 134 ELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVLEIYLSEREKY 193

Query: 256 ----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                     FIN + +K++              AG+ +S   H  R   AT     GA 
Sbjct: 194 LKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTFATHLLIGGAD 253

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G   +   + YT 
Sbjct: 254 LRSLQEMLGHADLQTTQIYTH 274


>gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 374

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 104/352 (29%), Gaps = 42/352 (11%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K  +    G     G+R +       T   A   A      +    +    K  T
Sbjct: 6   RKRGEKWSFTIDIGRDLLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           L   + E+ ++     +   + I++    + +II   G    + +   H +  V+S    
Sbjct: 65  LSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDE 124

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185
             +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F    
Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLAYA 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228
             +       F   L +G+R  +      +++                     F+     
Sbjct: 185 KFDNPIYYHLFSLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKTS 244

Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +         +              +       +  F   D + +     +  F+ 
Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFER 304

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               A V K   H +R   AT+    G     +    G  ++    +TY+  
Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSHV 356


>gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAO1]
 gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
 gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC
 gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1]
 gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       ++ ++   +     +I+    K+G  D+  + T+ +R+ V       
Sbjct: 5   LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R L+++ +R+     +P   +  PK   +  R    +   Q      
Sbjct: 65  QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     ++ L      ++ +     +  + +     
Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184

Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L      +          FI    +++      +  +     + G +   H +R   A
Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281


>gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
 gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC
 gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ]
          Length = 317

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 93/308 (30%), Gaps = 45/308 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------------- 119
           ++ + +      S + ++  ++ +  +             ++TK +              
Sbjct: 8   VARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYLASLNG 67

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                +   +  SS  + L ++R  F W VR   + +NP   +  PKR+         + 
Sbjct: 68  GLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFHLNIDQ 127

Query: 179 MQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
                              +     E L  SGLR S+     V  L      ++ Q  G 
Sbjct: 128 TVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGG 187

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN- 283
               V +    ++ L     G+     +          ++N    +   K  A  +G+  
Sbjct: 188 KERIVPVGSAALEALEQYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWA--SGIPA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               S H +R   AT   + GA    +    G  ++   + YT              R+ 
Sbjct: 246 FRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHV---------GLDRLL 296

Query: 341 SVVDSDDP 348
            V D   P
Sbjct: 297 EVYDKAHP 304


>gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9]
 gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 328

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 43/303 (14%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
           L+ E+    +   + + N+  ++       +R                + D   +    I
Sbjct: 19  LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDVDLI 78

Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
            S                R +TP +  + + S+R  + +  ++ + +  NP   +E PK 
Sbjct: 79  ESVDLNDLYAYLNFVTNERSNTPPARARKVASLRSFYDYLYKKAKVINKNPTQELESPKL 138

Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                   T ++ ++           +        L  GLR S+     +  ++++  + 
Sbjct: 139 SVRQPIYLTLDESKKLLDSIDGPFKERDYAIITLFLNCGLRVSELVNINIDDIKDDKLT- 197

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276
              K     TV L D  +  +      +    + + K        ++++        K  
Sbjct: 198 VIGKGNKQRTVYLNDACINAINAYLRVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 257

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
              A +     SAH +R  +AT+    G      L    G   V   + YT   D +++ 
Sbjct: 258 LKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 317

Query: 332 GIK 334
            + 
Sbjct: 318 AVN 320


>gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans
           ATCC 17616]
 gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616]
 gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 316

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 92/304 (30%), Gaps = 28/304 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107
            A  G+      + + R         +  + +      LA N+  ++        +    
Sbjct: 9   EAGDGTAAPSPALLASRASIDLFCDAL--WLEH----GLARNTLDAYRRDLTLFSQWLAA 62

Query: 108 --DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D          +   + +R     +S+ + L+  R  + WAVR+   + +P L +   
Sbjct: 63  THDAALDAADETMLTGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRASADPTLRIASA 122

Query: 165 KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K+        ++  ++            G + R   E +  SGLR S+        +  N
Sbjct: 123 KQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLN 182

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQF 269
              ++          V   +     +                    F+      M   QF
Sbjct: 183 EGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQF 242

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A  A V  + S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 243 WNIIKRHAQHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 301

Query: 328 RIRL 331
           R RL
Sbjct: 302 RERL 305


>gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402]
          Length = 305

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 34/286 (11%)

Query: 73  WLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHT 129
            +   Y   SA        +  S+++          + D    ++    IR  +      
Sbjct: 3   EVFESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKELDLNVFELKASDIRIFIAELADK 62

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S  + ++++R  +K+A+R     INP  SV   K   +       +  Q+F    
Sbjct: 63  KIAPASINRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCRLP 122

Query: 187 SEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240
           S       ++    F  L  +G R S+     ++ L     ++I   K      V   + 
Sbjct: 123 SNAGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEF 182

Query: 241 FMKLLAMTPIGKETF--------------------FINNDKQKMNATQFSIWFKAKATKA 280
             + L +    +                       FIN   Q + +             +
Sbjct: 183 AKEYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGIRYIINRYVELS 242

Query: 281 G--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + S H  R   A+     GA    +    G ++V   + YT 
Sbjct: 243 PELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288


>gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 82/266 (30%), Gaps = 15/266 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             Y +       + ++  ++ +YF   +      +  ++    I   +      +K + S
Sbjct: 94  EGYLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVS 153

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++    +  + +         + R K         +K ++++         +
Sbjct: 154 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKTVPEVLSKNEIKRILD-QLSNIK 209

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA 246
                  +  +GLR S+      + + + + S++    G          +L +   +   
Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F      Q  +A+      K  A +AG+    H    R   AT   + G   
Sbjct: 270 EYRPKKWLFEGETPGQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHLLEQGTDL 329

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
           H +    G   +     Y   ++  +
Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSNAHK 355


>gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 378

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 104/352 (29%), Gaps = 42/352 (11%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K  +    G     G+R +       T   A   A      +    +    K  T
Sbjct: 6   RKRGEKWSFTIDIGRDPLTGKRKQKTVSGFKTKKEA-ERACNELIHQFNTGSLVDDKNLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           L   + E+ ++     +   + I++    + +II   G    + +   H +  V+S    
Sbjct: 65  LSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDE 124

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185
             +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F    
Sbjct: 125 ELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYA 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQK 228
             +       F   L +G+R  +      +++                     F+     
Sbjct: 185 KFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETLIYDELGFRFTEPKTS 244

Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +         +              +       +  F   D + +     +  F+ 
Sbjct: 245 GSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFER 304

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               A V K   H +R   AT+    G     +    G  ++    +TY+  
Sbjct: 305 FIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHV 356


>gi|113460570|ref|YP_718634.1| phage integrase [Haemophilus somnus 129PT]
 gi|112822613|gb|ABI24702.1| phage integrase [Haemophilus somnus 129PT]
          Length = 374

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 101/344 (29%), Gaps = 39/344 (11%)

Query: 12  TKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++  ++G       Y      +  +      +               K           
Sbjct: 4   YRDENKNGTWYCKLSYVNWKGQKLSKKKRGFSTKKEAVAW-------EKEFLNGQAGSIE 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES-- 125
            T +     Y++      +  N+  + E+  + +I+   GD     IT   I        
Sbjct: 57  LTFREFFELYKRDKKPR-IRENTWRTKEAIVNSKIMPYIGDLLMIDITNVTIIQWQNELM 115

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKE 177
                  R ++P+        +  +   A R   +  N    V     K  + +  WT+E
Sbjct: 116 KVKDDRGRNYSPTYLRSIHAQLSSILNHACRYYNLKTNVARDVGTMGEKEADEMSFWTQE 175

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNNI 221
           + ++F +   +  Q   AFE L + GLR  +      +                 +    
Sbjct: 176 EYEKFIAAIKDKPQSFYAFEILYWCGLRMGELLALTKEKFNFNTNTLKVDESLQKIDGEN 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                +   +I  + +PD   + +     G       +     + +         A KA 
Sbjct: 236 IITPPKTKKSIRKIVMPDFLAEEIQNYLDGFYKLKPKDLIFTFSKSYLHHEMDRGAKKAN 295

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V +   H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 296 VKRIRVHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAH 339


>gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I++Y  +      L+ ++  ++     ++ + +       +T   +R   +   +   + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ ++  +  +                     
Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVRGKGDKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC
           17982]
          Length = 315

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 33/288 (11%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124
           T+L+ L+ ++          + ++  ++     +     +  G  +   I+ + I     
Sbjct: 2   TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61

Query: 125 SRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +          +   ++R L K+A+ +  V  +    +  P++     +  + 
Sbjct: 62  RLASGRVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121

Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +++ +            G +     E L  +G R S++       L  +      +  G 
Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181

Query: 232 IIT--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                      LA    G   FF+N+    ++        +  A
Sbjct: 182 GRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241

Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A  G   S H +R   AT   + GA+  E+    G  +V   + YT
Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYT 289


>gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 312

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 87/291 (29%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L+     + K  A    L+  +  ++E    Q +           G  D   +    +R 
Sbjct: 12  LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIADLRPADLRG 71

Query: 122 GVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +R++  + A      L  +R L ++  R+         ++  P++     +P T  D
Sbjct: 72  FLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASD 131

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
            +                ++       L  SGLR S++       L +   +      K 
Sbjct: 132 AKHIVSIEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASAADTVLRVAGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V +    ++ +A                F       +N            +   +
Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIVQRDMAKLRSALNL 251

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301


>gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
 gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568]
          Length = 300

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 35/300 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           I  + +        + ++  ++            D         + + +          S
Sbjct: 5   IEAFLEMMAVERDASPHTLAAYGRDLADAQTWLNDVGGLMGAPQEALEAWFADLSRRGLS 64

Query: 133 AIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
           A        S+R  +++A+ + + A +P   ++ PK+     +  ++++++   +     
Sbjct: 65  AATAARRRASVRQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDEIEALLTAAGAA 124

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
             + G +  +  E    SGLR S+     V+ ++ +    I   K G      L     +
Sbjct: 125 DSTAGLRLIVLVEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKERLAPLNMPARE 184

Query: 244 LLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
            +               P     F  +     +   +F+      A  AG++    S H 
Sbjct: 185 AIKAWLNARDAARKPNTPDSAWLFPSHGKSGHLTPRRFAQLLDQAAVMAGIDPARVSPHV 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   AT   + GA    +    G   +   + YT              R+S VV ++ P
Sbjct: 245 LRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHV---------AVDRLSQVVHANHP 295


>gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 279

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 104/278 (37%), Gaps = 14/278 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           + L+ ++ +++     + ++  ++E Y  + +    + D  ++T   I   +   +    
Sbjct: 4   EKLLKDFIENSSNQH-SASTLETYERYIRKFLMSWKN-DLSEVTDDDIDDFLNEYEEKGY 61

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    + ++   F     ++Y+++ P + VE P  + +  +P ++  + + K+   +
Sbjct: 62  NSRTIHVIIAALHDFFSHLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKD 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIIT----VELPDGFM 242
             + R   E L ++G+R S+     ++ +  +     I+  K                 +
Sbjct: 122 HLRDRAIIEVLHWTGVRVSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYLI 181

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300
           + L          FI   K+       +      A KAG+    + H  R    T   + 
Sbjct: 182 EYLDTRSDDIPYLFITKRKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFITDLINK 241

Query: 301 GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           GA    +    G + + + + YT+ A  R +L  +   
Sbjct: 242 GAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279


>gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2]
 gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           LESB58]
 gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa
           PAb1]
 gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
 gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC
 gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC
 gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192]
 gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58]
 gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       ++ ++   +     +I+    K+G  D+  + T+ +R+ V       
Sbjct: 5   LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R L+++ +R+     +P   +  PK   +  R    +   Q      
Sbjct: 65  QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     ++ L      ++ +     +  + +     
Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAAR 184

Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L      +          FI    +++      +  +     + G +   H +R   A
Sbjct: 185 QALEAWLPLRAQAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281


>gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 387

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 8   PPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P  + ++R   G +  Y   + +G  ++  L          A       +    E I + 
Sbjct: 13  PVRIREKRLNDGNVSLYLDMYYRGARKKEGLKLYLVPETDAAAKLQNRNTRKLAEQIKAQ 72

Query: 65  R----------------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-- 106
           R                K   TL   +++Y  +A    L+  S  S  +   ++      
Sbjct: 73  RILDIQEKGLVNWEDVKKARMTLSAWVAKY--TAEENGLSPASMRSKRNAQARVEEYLLY 130

Query: 107 ---GDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYV 153
                   +++     +  +   K           + ++   F+  +      AV +  +
Sbjct: 131 IGKPTLALKEVDKDFCKGFIAFLKTCTFNQGKKTLSSTTCRIFMNRLAAALNKAVSEGML 190

Query: 154 AINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             NP     + E+P++ +      T E+++Q  +        + AF F  ++GLR SD  
Sbjct: 191 DRNPFKLLETKEKPQKLSAMREFLTIEELRQLMATPCRYDIVKKAFLFSCFTGLRYSDMM 250

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNAT 267
                 +               +  +         + L   P   +       + ++ +T
Sbjct: 251 TLKWSEIHTAADGKTLYIEHQQVKTKNTVTIPLSNEALKWMPRKSKDDDRVFHQLRITST 310

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +       +AG+ K    H  R  +AT+    GA  + +    G +++   E Y K 
Sbjct: 311 TVEVVLGEWMQEAGIQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKI 370

Query: 326 ADRIRL 331
            D+ ++
Sbjct: 371 VDKKKI 376


>gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC
          Length = 318

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126
             +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R
Sbjct: 24  RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 83

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   + A      L  +R   ++  R          +V  PK+     +  T  +  +  
Sbjct: 84  RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 143

Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
           +            ++       L   GLR +++           + S++    G     V
Sbjct: 144 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIV 203

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286
            +     + +              +     A              +      G+    + 
Sbjct: 204 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 263

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 307


>gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583]
 gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583]
          Length = 250

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 138/247 (55%), Gaps = 3/247 (1%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +++   G   Y+ I  KHI +GVE RK TP++A  FL ++  LFKWA+ Q  +  N  L 
Sbjct: 2   KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61

Query: 161 VERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V+ P  +  +G   W++ D+ ++   W  G+  R+  + LLY+GLR  D+ R G + + +
Sbjct: 62  VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121

Query: 220 NIFSIKTQK--TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           NI  IKT+K      + + +     + L + PIG+ETF    + +K+    F   F+   
Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             A V KSAHG+RK +AT +A+AGAT  +L A +GW   + A  YTK ADR RL ++  +
Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241

Query: 338 RISSVVD 344
           ++  + D
Sbjct: 242 KLQKMRD 248


>gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
 gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001]
          Length = 424

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 96/325 (29%), Gaps = 16/325 (4%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68
           +V   R  +G+   Y    HG         +     A    A               +  
Sbjct: 73  YVVHYR-ANGRFRRYTIGHHGPW-----TADKARDEAIKILARVKDGNDPNTERGEERTS 126

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRK 127
            T+      + +      L   ++  ++   D  I +K G      +T   + +   + +
Sbjct: 127 PTVSQFCKIFIERHVKTHLKSTTQAEYQRAIDLFITKKIGSRKMAAVTHSDVVTFHHTYR 186

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H P  A + L  +  +F  A+       N        + K +    +   +  Q      
Sbjct: 187 HIPYQANRTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRERYLAAEEHQRLGKAL 246

Query: 188 EGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           + ++        AF+ LL +G R  +  R   +++  +   I+   +             
Sbjct: 247 DDARSTMPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGVIRLPDSKNGARTVQLGESA 306

Query: 243 KLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             L       E        +K   + T     ++    +AG+ +   H +R   A+ + +
Sbjct: 307 IGLLGDIPRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLEDVRIHDLRHSFASDALE 366

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G     +    G + +     Y  
Sbjct: 367 LGEDLIMIGKLLGHRDLKSTARYAH 391


>gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 329

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 25/302 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           + L       +  +  +    T +  +S + ++    ++  +++  ++      I+  G 
Sbjct: 13  AVLEDVLKFLKQQSELKNNSITFQEFVSYWFEAYAKIAVKQSTQKRYKELLKPAIQAIGS 72

Query: 109 FDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                +    I+    S     S  + ++    +  +FK AV  EY++ NP   V  P  
Sbjct: 73  KPLSDVKPLDIQKIYISLTGKISDCTILKLHRLLHEIFKHAVMWEYISNNPVKKVLPPSP 132

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           + +    W  E  ++F       +         L++G+R  +        +      I  
Sbjct: 133 EKKVFDVWDAETAKRFLEVIRNETIYYPV-LIALHTGMRAGEIVSLKWCDVNFEARIISV 191

Query: 227 QKTGT---------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NA 266
            K+                   +V + D     L       +    +    ++       
Sbjct: 192 VKSVRNNRGLKTSDVKTKTSKRSVYINDVLYSELKNLYEITKPKPDDFVCPRLPTGNLTV 251

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              S  FK    +        H +R   AT+    G     +    G   +   A+TY+ 
Sbjct: 252 EYLSKRFKKLVKRYNFPVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 311

Query: 325 GA 326
             
Sbjct: 312 VL 313


>gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
 gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455]
          Length = 290

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 16/263 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESR---KHTPS 131
           EY ++      + N+  ++     Q      + +    +ITT  IR+ + S     +  S
Sbjct: 10  EYLRNNKAS--SENTVTNYAVDLAQFADFVENQETGPLEITTPLIRAFLRSLAGFGYANS 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSE 188
           S  + L++++    + + +  +A +P  S+  P+      R  +++ +    Q       
Sbjct: 68  SIARKLSAVKAFELYLLEKGLIAADPAASIRSPRLPERLPRALSRDGIERLIQEAWKIKP 127

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
             +     E +   G+R ++        +  +        K      V       + L  
Sbjct: 128 CLRNGTILEVMYGCGVRVAELVSLRWDDVDVDERWLKVRGKGDKERLVPFGRYAKEALTR 187

Query: 248 TPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGA 302
                          K    +            A  AG+   + H VR   AT   + GA
Sbjct: 188 WKAECLPEPGFLFPGKGGAAITVRTVHRLVVQAARNAGLENVTPHSVRHSFATHMLEGGA 247

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
           + + L    G +++   + Y K 
Sbjct: 248 SLNVLQELLGHESLLTTQRYLKV 270


>gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 345

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120
           + E+         ++ ++  ++      ++  +G+              D  ++ + H+R
Sbjct: 44  VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLR 103

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    +
Sbjct: 104 QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDAD 163

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 164 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 223

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 224 LVPVGSHAIAALRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 283

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 284 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 328


>gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195]
 gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678]
          Length = 306

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
              Y  +     L+ ++  ++    ++      D     +  +   + + + +  +  +P
Sbjct: 19  FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLAKLHRKGLSP 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  + +NP   +  PK+     +    + +           
Sbjct: 77  RSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q ++  ++   K      V +    +  L 
Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  V    H +R   AT  
Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +A A    +    G   +   + YT   D   L 
Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290


>gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           Bt4]
 gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis
           E264]
 gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264]
          Length = 306

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I++Y  +      L+ ++  ++     ++ + +       +T   +R   +   +   + 
Sbjct: 6   IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        + G+
Sbjct: 66  RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E    SGLR ++     V++ ++  +  +                     
Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVRGKGEKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR]
 gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR]
          Length = 302

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 95/289 (32%), Gaps = 32/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVE 124
            + ++        + +  +  S+++   Q++            +    ++    IR  + 
Sbjct: 4   YVDDFMVYLQVEKNASEKTLQSYQTDLFQMVDFISAEINITPENLQPDRVDHLVIRKFLA 63

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +      S+  + L +MR  F++  R+E +  NP + V  PK +    +   ++D++ 
Sbjct: 64  ELQRRGLSRSTIARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRN 123

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236
                +     G + R   E L  SG+R S+     +  +  N   ++    G     V 
Sbjct: 124 LIEAPERNTPRGLRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIWFKAKATKAGVNK 284
           L    +  L        T      K+             ++             K  + +
Sbjct: 184 LGQFAINALKAYLTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQ 243

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             S H +R   AT   DAGA    +    G   +   + YT    R  L
Sbjct: 244 RVSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVT-REHL 291


>gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
 gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309]
          Length = 315

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 33/288 (11%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124
           T+L+ L+ ++          + ++  ++     +     +  G  +   I+ + I     
Sbjct: 2   TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61

Query: 125 SRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +          +   ++R L K+A+ +  V  +    +  P++     +  + 
Sbjct: 62  RLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121

Query: 177 EDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +++ +            G +     E L  +G R S++       L  +      +  G 
Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181

Query: 232 IIT--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                      LA    G   FF+N+    ++        +  A
Sbjct: 182 GRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241

Query: 278 TKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A  G   S H +R   AT   + GA+  E+    G  +V   + YT
Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYT 289


>gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB18]
 gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 86/308 (27%), Gaps = 35/308 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------- 108
               +  P      +    + +         L+  +  ++     Q +    +       
Sbjct: 8   APAPLELPGAAADLVAEA-TRWLAYLRSERRLSPKTLEAYTRDLRQCLTFLNEHWDAQVS 66

Query: 109 -FDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +  +    IR+ + SR+       S ++ L  +R   ++  R+    +    ++  P
Sbjct: 67  IKRFAALEAGDIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAP 126

Query: 165 KRKTEGIRPWTKEDMQQFKSF---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           K      +P      ++                 ++       L  SGLR S++     +
Sbjct: 127 KVGKSLPKPIQIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKRR 186

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMN 265
            +           TG      +      +L++             +Q           ++
Sbjct: 187 DVPLPGKGDTLIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPLPQQGPIFVGARGGPLS 246

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                +  +      G+    + H +R   AT     G     +    G  ++   + YT
Sbjct: 247 PRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYT 306

Query: 324 KGADRIRL 331
            G D  RL
Sbjct: 307 -GIDSERL 313


>gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
 gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T]
          Length = 304

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 90/279 (32%), Gaps = 21/279 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
                +  +     ++  +  ++ +    ++R + +     +    IR  V         
Sbjct: 18  QAWLAWLATQ--RRVSPLTLTAYRAGLQALLRLAEEHPPESLQPADIRRFVARLHGEGQQ 75

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S  + L++ R  ++W VR+  V INP L +  PK  +   R  + E          + 
Sbjct: 76  GRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQANALLDPEPQN 135

Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +    FE    SGLR ++     +    +    + T          +P G   + A
Sbjct: 136 LLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTGKRQRQRTVPVGGKAIAA 195

Query: 247 MTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           + P  +             F+  D  +++    +     +A   G+  +   H +R   A
Sbjct: 196 LRPWLEIRAGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQALGLGVHVHPHMLRHSFA 255

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +    +      +    G  ++   + YT   D   L  
Sbjct: 256 SHLLQSSGDLRAVQELLGHASIRSTQIYTH-LDFQHLAA 293


>gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171]
 gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012]
 gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171]
 gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012]
 gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-]
 gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74]
          Length = 334

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    +         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C]
          Length = 312

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 42/310 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
             +I  + +        +V + ++++        K         + +     ++ S ++ 
Sbjct: 4   DAVIDHFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
                +S  + L+++R  F++   +     +P   ++ P++     +  +++ + +    
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123

Query: 184 ------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230
                         +    + ++  E L  +GLR S+     VQ ++     I    K  
Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281
               V L +   ++L      ++            A            +   K  A +AG
Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +   N S H +R   A+     GA    +    G   +   + YT   +          R
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE---------AR 294

Query: 339 ISSVVDSDDP 348
           +  +V+   P
Sbjct: 295 LHRLVNEYHP 304


>gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010]
          Length = 334

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    +         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGS 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 347

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 91/343 (26%), Gaps = 18/343 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-----ALTGSTPKREYINSPRKKPT 69
           R  +G     +R   G++    +        A           GS   R       +   
Sbjct: 6   RKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGSVQPRTPEAISEEVAV 65

Query: 70  T----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
           T    L  L   Y  S      ++ +    +S+    +I         +I    I   V 
Sbjct: 66  TGKLYLDQLAQMYINSRKVEGTSIRTLNEIKSFLKRHLIPVFAQRPVEEIKYDEIVKIVA 125

Query: 125 S--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +P +  ++L+ ++ +FK+ V  + +  NP     +P+         T +D+QQ 
Sbjct: 126 KAYENRSPVTRGRYLSYLKTVFKFGVEHDLIEKNPLRQWHKPRE-KPRDTKLTVDDLQQI 184

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGF 241
           K+         +   + L      S+        +                         
Sbjct: 185 KAAAEPHLAWAIEVAWNLGVRTGPSELLALTWDDISWAEKTINVFATKTNTRRTVPLSDE 244

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                             +       Q S   +    +AG+      + VR   AT   +
Sbjct: 245 FLARLQEKKATAQCERIVEYHGRPVKQISRAMRTACRRAGITYPVVLYDVRHLFATTLLN 304

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRIS 340
            G     +    G  ++      Y     D  R  I    R+ 
Sbjct: 305 EGGDLSAVSKLMGHSSIQMTANNYYHLLGDEKRRTIARLPRLE 347


>gi|254453365|ref|ZP_05066802.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267771|gb|EDY92041.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 385

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 88/299 (29%), Gaps = 15/299 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109
           L G  P  + + +      ++  L  +Y +             +  S  D++ + + G  
Sbjct: 84  LRGGDPVADAVTARTAP--SIADLAEQYYEIHALPKKRKKGAANDRSMLDRLVLPRLGKQ 141

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              ++  + I++   S K TP  A + L+ +  +F+ ++       NP   VE+   +  
Sbjct: 142 KVLEVCHRDIQTFHNSLKATPYQANRVLSLLSKMFELSISWGMRGENPAKGVEKFHEEK- 200

Query: 170 GIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             R  + +++ +  +        +   A    L +G R  +   A       +       
Sbjct: 201 RHRWLSSDELSRLGAALDRHRNQKAANAIRLQLLTGARIGEVLSAQWADFDLDRGVWVKP 260

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280
              T           K              +                    ++++    A
Sbjct: 261 SHHTKQKRTEHLPLAKAAVALLEKVHEAQRSGSNFVFPGRSKIKPLVDLKKFWRSLIADA 320

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
            + +   H  R   A+    +G +   +    G       + Y   AD  +R   +   
Sbjct: 321 DIVDYRIHDNRHTHASQLVSSGMSLAIVGRLLGHTNPMTTQRYAHIADEPLRAAAEVMA 379


>gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
 gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583]
          Length = 312

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 90/287 (31%), Gaps = 33/287 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           +I  + +        + ++  +++        K         + +      + S +    
Sbjct: 6   IIDRFLEMMSAERGASAHTLAAYQHDLQWAQDKLSSCSVSLFSARKEDLISLLSLMHKAG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------------ 175
              +S  + L+++R  +++   ++    +P   ++ P++     +  +            
Sbjct: 66  FAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLLDFAQ 125

Query: 176 --KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232
                 +     +    + ++  E L  +GLR S+     VQ ++     I    K G  
Sbjct: 126 LETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGKGGKE 185

Query: 233 ITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             V L     ++L+                 F  ++    +     +   K  A +AG+ 
Sbjct: 186 RMVLLSAKARQVLSEWLVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLAKRAGIR 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               S H +R   A+     GA    +    G   +   + YT   +
Sbjct: 246 GDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLE 292


>gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185]
 gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
              Y  +     L+ ++  ++    ++      D     +  +   + + S +  +  +P
Sbjct: 19  FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLSKLHRKGLSP 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  + +NP   +  PK+     +    + +           
Sbjct: 77  RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q ++  ++   K      V +    +  L 
Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALQ 196

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  V    H +R   AT  
Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +A A    +    G   +   + YT   D   L 
Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290


>gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
 gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031]
 gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC
           11116]
          Length = 299

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 292

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 88/255 (34%), Gaps = 15/255 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            + +  +  +++    Q+ +   D +   +T   I   ++      ++P +  + L+S+R
Sbjct: 18  KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKRLHAQGNSPKTLQRKLSSVR 77

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198
             F + +  E V+ NP   ++ PK      +    +++              +    F+ 
Sbjct: 78  SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI 257
           L   G+R S+     ++ +  +  +I+          V      +  L      +++   
Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKP 197

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
           ++D   ++     +  ++   +  +        +   H +R   A+   D+      +  
Sbjct: 198 SSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVKD 257

Query: 310 TYGWKTVDQAETYTK 324
             G   +   + YT 
Sbjct: 258 LLGHADISSTQIYTH 272


>gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 307

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 29/281 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSG--VESR 126
           +  +         L+  +  ++    +  +    +      D+  I +  +RS    + R
Sbjct: 12  LDAFCAHLALERRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSVDVRSFLVDQGR 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K +  +    ++ +R  + +  +Q  V  NP   V  PK      +  T+  M++     
Sbjct: 72  KVSRRTLHNQVSGLRAFYLYLRKQGQVESNPFAGVSLPKLDKPLPKFLTESQMRRLLDAP 131

Query: 187 -----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
                       +  +  L  E L   GLR S+ C      +       +          
Sbjct: 132 VELWKAGKLSEFDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKERL 191

Query: 235 VELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285
             L    ++ L              +      + ++M         K    +A +    +
Sbjct: 192 CPLGPVAIQCLKTFVDRFKLSAELDQAVACQRNGRRMEPRMVQKQLKLHLAQAELPSDMT 251

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   D GA    +    G   +   + YT  +
Sbjct: 252 PHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVS 292


>gi|238855032|ref|ZP_04645361.1| integrase [Lactobacillus jensenii 269-3]
 gi|282934072|ref|ZP_06339352.1| phage integrase [Lactobacillus jensenii 208-1]
 gi|238832403|gb|EEQ24711.1| integrase [Lactobacillus jensenii 269-3]
 gi|281301874|gb|EFA94138.1| phage integrase [Lactobacillus jensenii 208-1]
          Length = 367

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 109/355 (30%), Gaps = 31/355 (8%)

Query: 20  KIIYYF---RKGHGRRIRLPY-PHESTFIPAYMSALTG-STPKREYINSPRKKPTTLKWL 74
           +  +Y        G+++R     + + F     +A+       R        +   L   
Sbjct: 14  RSTWYITEIDPDTGKKVRKRKSKYVTGFATKRQAAIAASEFETRRNTGENILENPALFDY 73

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
             +Y +      +   + I++ +   +I     +   + IT    ++ +     K++ S+
Sbjct: 74  AEDYIELNVKNRVRPATLIAYRNSIKRIEDNFPNIPLKSITRSMFQAFLNQISIKYSKST 133

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q       + K A+    +  +    V+ P++  +  +                 S  
Sbjct: 134 VNQTAVVFSQIMKLALADGIIVRDVTSFVQIPEKAQDKRKIDYLSLSDVKALVQHIKSNL 193

Query: 193 RLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITV 235
             +     +      +G R S+        L      I  Q+             ++ TV
Sbjct: 194 STSKVGPYFILTAIQTGARLSEIAALTWNDLTPTSIKITKQRNRDGVVSKPKTESSVRTV 253

Query: 236 ELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291
            +      +L    + K+   F   +    + +  +   +    + G+ +     H +R 
Sbjct: 254 SITKELYNILQDLKVNKKDLIFEQPNGIVPDPSSLNFTLRRLLKECGIKRHGFHFHSLRH 313

Query: 292 FSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345
               +  +A      +    G K V    E Y    D  +   +  R+I SV+++
Sbjct: 314 THVALLLNADVDILTISQRLGHKNVSTTTEVYAYLLDEKKKSEE--RKIKSVLET 366


>gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421]
 gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421]
          Length = 289

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 86/269 (31%), Gaps = 13/269 (4%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVES 125
           L+  +  +        SLA N+  +++   ++  R          T      H  + +  
Sbjct: 3   LRDAVEHWLDHLIAARSLAGNTLKAYQRDLEEFARFVESEHLDWQTFGATGTHHFAQILQ 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + HTP SA + L+++R  ++ A+ Q +    P            G+         +    
Sbjct: 63  KTHTPRSAARKLSALRTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKLIE 122

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
            +         E L  +GL+  + C   V+ +                  V + +  +  
Sbjct: 123 SAASPLESAVLELLYATGLKAGELCELRVRDVAFAEAYLSVQPAASQPRVVPVGEPALAA 182

Query: 245 LAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           +         + +   F+    + +N        +  A ++ ++   +   +R   A   
Sbjct: 183 VEAYLGSEPVLPERWLFVGRQNRPLNRFHIYRIVREAAARSAIDWPVTPDTLRHSFAVHL 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + GA    +    G  ++     YT+ A
Sbjct: 243 LEGGADLATVRELLGHASLATTGIYTRLA 271


>gi|237811210|ref|YP_002895661.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
 gi|237503525|gb|ACQ95843.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
          Length = 443

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 111/354 (31%), Gaps = 25/354 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59
           P    + T  G+      Y    G  R+ ++    E T   A        A         
Sbjct: 29  PGFLCKVTASGRKVFMLQYRTNSGERRKPKIGLFGELTVDQARSIAQDWLADVRKGSDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
                 ++  T+K L +++ +         ++  +++   D+ I+ K G     ++T   
Sbjct: 89  AAKQAARQAPTVKELCTQFIEEYSKTRNKPSTVETYQDQIDRYIVPKLGRIKVPELTRMD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +       ++A + L  +R +   A    Y           PK +  G   +  ++
Sbjct: 149 VTAMMRDMVKISATANRVLACLRKMLNMAEVWGYRPDGSNPCRHVPKYRESGETRYITDE 208

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                  + + +         L   +R      A +  ++   ++     +  +      
Sbjct: 209 ELARLYAYLDRADIEGLEHPTLTLAIRLQFEFSARMSEIRMLQWAWIDFDSRRVAWPDSK 268

Query: 236 ------ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  + +   +LL+              I + +  ++   +   ++    +A V   
Sbjct: 269 TGGISKPMSEAAHQLLSNAHRIEGSPYVCPSIYDKEIPLSEGTYYNSWRRILQRAKVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             HG+R  +AT  A++G      MA    KTV     Y    D  +R   +   
Sbjct: 329 GTHGIRHRAATDIANSGVPVKVGMALTAHKTVSMFMRYVHTEDDPVRAAAEKVA 382


>gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 381

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 102/375 (27%), Gaps = 37/375 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIY----YFRKGHGRRIRLP-------YPHESTFIPAYMS 49
           M+  +R  P++     + GK  +     F+   G   R               +     S
Sbjct: 1   MSVKVR--PYI-----KRGKSGWEVDIMFKWPDGELYRERVKAPVSSKSGAKAWGEQRQS 53

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSG 107
            L     + +     +  P  L+  +  + +  A       ++ IS ES     ++ + G
Sbjct: 54  ELLARGKQAKEEVKRKAVPM-LEEFVPRFIEGYARANRQKPSTIISKESVLRIYLVPRFG 112

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                 +T + I+      K  +  +    LT    L K AV    +   P         
Sbjct: 113 QRRLDTLTHEDIQRLKADLKDLSTKTVNNVLTVFNKLLKVAVEWGVLDKLPVTIKLLKAP 172

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------- 218
           K        +E  +  ++      + +        +GLR  +        +         
Sbjct: 173 KPTMSFYDFEEYERLVEAASKLDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHI 232

Query: 219 ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                       +                L     +        ++ Q       S W  
Sbjct: 233 RQSEWQGHVTVPKGGRDRRVPMTKRLAALLATNRHLKGPRVLYRDNGQPATRAAVSRWMA 292

Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-L 331
               +AG+  +   H +R    +  A  GA A  +    G + +   + Y   +   +  
Sbjct: 293 KAQKRAGLPVTRALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHLSPAAKDA 352

Query: 332 GIKNSRRISSVVDSD 346
            I      +S +  D
Sbjct: 353 AISLLDEAASQISGD 367


>gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 97/305 (31%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFD-----------------QIIRKSGDFDYRKI- 114
           LI++Y         L+ N+   +    +                 +  ++  D +   I 
Sbjct: 9   LITDYLNYLKSIRGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNKEFNDDEINSII 68

Query: 115 ------------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161
                          ++      +  T S+  + +++++  +K+     E +  N    +
Sbjct: 69  NPSFFETLTLQDFYSYLSYLDNEKNDTASTRSRKISAIKSFYKYLYSEIEVINSNVSEKL 128

Query: 162 ERPKRKTEGIRPWTKE------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             PK         T        D    +      S+        L +G+R S+     + 
Sbjct: 129 TNPKISQRQPVYLTLTETERLLDTINNEKNDFLRSRDLAIVFTFLTTGMRLSELVSIDIT 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266
            + N+ F+I  +      TV L D  ++L+    + +  +         FI+  K++++ 
Sbjct: 189 DIVNDHFNIIGKGN-KERTVYLTDNCLQLIYSYILVRAKYIGDKDIDALFISTRKKRISN 247

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                       KAG +    S H +R  +AT+    G      L    G   V   + Y
Sbjct: 248 RAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIY 307

Query: 323 TKGAD 327
           T   D
Sbjct: 308 THLDD 312


>gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 391

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 106/351 (30%), Gaps = 32/351 (9%)

Query: 21  IIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPTTLKW 73
           +   +R    +    +L    + T   A + A             +     RK   T   
Sbjct: 47  VYLRYRNTSNKTAHAKLGTTLDLTLKDARVKARQLKAEIALGADPQAEAQQRKAVPTWHA 106

Query: 74  LI-SEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128
                Y   A        ++ ++++  D    ++  + G      IT + ++      + 
Sbjct: 107 FFTDSYLPHAKQ------TKRTWKNDADMHRLRLGPRFGATPINGITRQEVQQFHNELRE 160

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +   P++A   L  +R     AV    +  NP   V++     E  R  T  ++++    
Sbjct: 161 SGMAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLTDPELRRLLEV 220

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPD 239
               E      A  +LL +G R  ++  A    +           T      + ++ L D
Sbjct: 221 LKAHENRPVACAVLWLLATGARVGEALAAEWPDIDRGNRVWVVHATNSKSKKLRSIPLND 280

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
             + +L                          +  +      AG+   + H +R   A++
Sbjct: 281 VALGVLDELQTLPRYQPGGRLFIGKRGPLGTINKVWYGIRDAAGLESFTLHCLRHSHASL 340

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDS 345
             ++G + +E+    G         Y+  +           S RI + +  
Sbjct: 341 LVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQSAANSASDRIKAAMGE 391


>gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 28/282 (9%)

Query: 76  SEYRKSAHWGSLAV-NSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP- 130
             + +       A  N+  ++    D +       G           +   + +      
Sbjct: 8   EAFLEMMAVERAAAINTLDAYRRDLDDLDNYLTKRGGAPLSA-RPADLAGYMRALADAGM 66

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
              +  + L+ +R  + +   + + A +P   ++ P+      +  +++ +         
Sbjct: 67  ATRTQARRLSCLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVGDLLDAARA 126

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242
               +G       E L  +GLR S+        +  +    +   K      V L D   
Sbjct: 127 LESPQGEMMTALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGDKERMVPLSDPAR 186

Query: 243 KLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
             L +               +  F  +     +    F+        KAG++    S H 
Sbjct: 187 AALRVWLPLRQDLLGKKKTSRWLFPGSGKTGHLTRAGFARALLRVGMKAGIDPRRLSPHV 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +R   AT     GA    +    G   +   E YT   +  +
Sbjct: 247 LRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPK 288


>gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 326

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 95/317 (29%), Gaps = 27/317 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L       +  +  +    T +  ++ + ++    ++  +++  +       I+  G   
Sbjct: 12  LEDILKILKQHSDLKSSSITFQEFVNYWFEAYAKIAVKQSTQKRYRELLIPAIKAIGTKP 71

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              I    I+    +   K + S+ ++    +  +FK AV  EY++ NP   V  P  + 
Sbjct: 72  LSDIKPLDIQKIYMNLTGKLSDSTILKLHRLLHEIFKHAVMWEYISDNPVKKVLPPSPEK 131

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +    W  E  ++F       +         L++G+R  +        +      I   K
Sbjct: 132 KVFDVWDVETAKRFLEVIRNETIYYPV-LIALHTGMRAGEIVSLKWYDVNFEARIISVVK 190

Query: 229 TGT---------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQ 268
           +                   +V + D     L       +    +    ++         
Sbjct: 191 SVRNNRGLKTSDVKTKTSKRSVYINDVLFSELKNLYETIKPKPDDFVCPRLPTGNLTVGY 250

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
            S  FK    +        H +R   AT+    G     +    G   +   A+TY+   
Sbjct: 251 LSKRFKLLVKRYNFPVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHVL 310

Query: 327 DRIRLGIKNSRRISSVV 343
               +     +  S + 
Sbjct: 311 PT--MQESAMKEFSKLW 325


>gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 330

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 43/303 (14%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
           L+ E+    +   + + N+  ++       +R                + D   +    I
Sbjct: 20  LLEEFLNYFSTVKARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDVDLI 79

Query: 120 RSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166
            S                R +TP +  + + S+R  + +  ++ + ++ NP   +E PK 
Sbjct: 80  ESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKAKVLSKNPTQELESPKL 139

Query: 167 KTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                   T ++ ++  +        +        L  GLR S+     +  ++++  + 
Sbjct: 140 SVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKDDKLT- 198

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAK 276
              K     TV L D  +  +      +    + + K        ++++        K  
Sbjct: 199 VIGKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYTVKKH 258

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRL 331
              A +     SAH +R  +AT+    G      L    G   V   + YT   D +++ 
Sbjct: 259 LKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318

Query: 332 GIK 334
            + 
Sbjct: 319 AVN 321


>gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 392

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 25/343 (7%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR------EYINSPRKKPTTLKWL 74
                R     +       ++        A +G   +           +   +  TL   
Sbjct: 32  YRERVRVPVSGKTSAKRWADAREAEVISLARSGLDAEAIHAKLNGKGAANEARVPTLAEF 91

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132
             ++ + A       ++  + ES     ++   G     +IT   +++   +   H P +
Sbjct: 92  EKQFIEHARANRQKASTVYAKESILRVHLVPVLGTKRLDEITEADVQALKVTLAEHRPKT 151

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191
               L ++  L + A R   +   P  S E  K     +  +T E+      +      +
Sbjct: 152 VNNVLATLSKLLRVAKRLGVIDAVPVESFELVKAPLAAVPFYTFEEYAVLVAAARRLDPR 211

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDG 240
              A      +GLR  +     +  ++     I  ++                 V + D 
Sbjct: 212 ILAAVLLGGNAGLRAGEVVALELPDVRRANARITIERQAWRGVVDTPKGGKGRVVPMTDA 271

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
               LA     +    +  D      A     W K+    AG+  +   H +R    +  
Sbjct: 272 LKAALAAVRHLRGARVLVQDDGSDLTAKVLRGWMKSAQRLAGLRPTGNFHILRHTFCSHL 331

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           A  GA A  +    G   +     Y   A+  +   +  R + 
Sbjct: 332 AMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHK--EQAIRLLD 372


>gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis
           KC583]
 gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583]
          Length = 322

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 82/284 (28%), Gaps = 30/284 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128
           + +S  H   +A  +  ++E    Q      +  G          +    +RS +  R+ 
Sbjct: 29  WLESLLHIHRMATRTVEAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRSYMAYRRK 88

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------D 178
              +  S  + + SMR  F +  R+  V +     V  PK      +  T +        
Sbjct: 89  QMVSTRSLSRNMASMRSFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKAALTIVKQ 148

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
             Q +      ++       L   G+R S++     +   +   +      K G    V 
Sbjct: 149 GNQQEDEPWIAARNAAVLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVGKGGKTRLVP 208

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKS--AH 287
           L     + +            +N      A              +      G+ K+   H
Sbjct: 209 LIKTVYESVETYLKCCPYPLGDNQPMFRGARGGPLQPAIIQRAVQNLRASLGLPKTATPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT+      L
Sbjct: 269 ALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLL 312


>gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
 gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957]
          Length = 294

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 19/273 (6%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KHT 129
             + +        A N+  ++ +  + +   +           T+ +R  +        +
Sbjct: 6   EAFLEMLAAERGAARNTLAAYRADLEDVAGFARRQGGTLAGADTELLRRYLAGLTDAGLS 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           P +A + L+++R  +++   +   A +P   ++ P++ +   +   +E+++         
Sbjct: 66  PRTAARRLSALRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALLDAATRL 125

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM 242
               G       E L  SGLR S+      + L  +   +  + +     +        +
Sbjct: 126 PGKRGPLATALLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGNKERLVPISERARL 185

Query: 243 KLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
             L++    K + ++   +     +      +  K  A  AG++    S H +R   AT 
Sbjct: 186 AALSLQDPKKPSKWLFPSRGAAGHLTRQSLLLLVKQAALAAGLDPAKLSPHVLRHSFATH 245

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + GA    L    G   +   + YT+  +  
Sbjct: 246 LLEGGADLRALQMLLGHADIATTQIYTRVLEER 278


>gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
 gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor
           NM305]
          Length = 300

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
           I  Y         ++ ++  +++     +                    + I S    + 
Sbjct: 9   IQPYWDYLRAEKQVSPHTLSNYQRQLQAVCAMLKQQQISSWQEVDASVIRWILSQSHKQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
               S    L ++R  F + V+ E +  NP L ++ PK      +    E + Q  +   
Sbjct: 69  LGAKSIGVRLVALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEA 128

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
                 +     E +  SGLR S+     +  +  +   ++   K      V +    ++
Sbjct: 129 TKPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGSKALE 188

Query: 244 LLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            +      +  F   ++         +++     +  +    K G+  +   H +R   A
Sbjct: 189 AIHRWLEVRMRFNPQDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFA 248

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   +       +    G  ++   + YT   D   L 
Sbjct: 249 THMLEGSGDLRAVQELLGHSSLATTQIYTH-LDFQHLA 285


>gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 326

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 42/298 (14%)

Query: 74  LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFD----------------YR 112
           ++ ++          +  +   +       +       G  D                 +
Sbjct: 11  IVDDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAINIDILK 70

Query: 113 KITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRK 167
            I    I +        RK++  +  + ++S+R  F + + + + +  NP   ++ PK +
Sbjct: 71  SINKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKIE 130

Query: 168 TEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                  T E+ +      SE        ++        L  G+R S+     ++ + N+
Sbjct: 131 KRLPIYLTLEESKLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIKDVNND 190

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKA 275
                T K     T+ L +  +  L      +           N   +++  Q     + 
Sbjct: 191 NTLRVTGKGNKERTIYLNNACVNALKNYLNYRNDTDNKALFLSNRNTRLSNRQIQRMVEK 250

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
               +G++    + H +R  +A++    G A    L    G ++V   + YT   D+ 
Sbjct: 251 YINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQ 308


>gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
 gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1]
          Length = 264

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +S+ + L+++R LF++  R+++   +P   +  PK      +  ++  +++     
Sbjct: 32  GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 91

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + +   E L  +GLR S+     +  +      ++          V L +  
Sbjct: 92  LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 151

Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +  L         +          F +   Q+M    F    K  A  AG++    S H 
Sbjct: 152 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 211

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 212 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 252


>gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
 gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9]
          Length = 295

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 19/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  ++  +         +  ++     +I +   D     +TT  ++    S    H+ S
Sbjct: 12  LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + +E+  ++       P +  +     T + +       ++  +
Sbjct: 71  TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
            ++ F  L   GLR  +     V  +  +     I+  K G    V +P   +  L    
Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185

Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +              N    M+        K      G+NK  S H +R   AT   + G
Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGFATHLLEQG 245

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343
                L    G  +++    YT+    + R       R++  +
Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288


>gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 391

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 101/335 (30%), Gaps = 47/335 (14%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             +  +   P     TL      + +      LA ++    +    +I+   G +    +
Sbjct: 57  EREVRHDPQPVNHAMTLAAYTEHWLRDIAPDKLAASTYSRDQQDIRRILPALGHYKLTDL 116

Query: 115 TTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             + IR+  E+ +  P           S      ++  +   AV + Y+  NP   V +P
Sbjct: 117 RKETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVDEGYLTHNPAWRVYKP 176

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K   +      +E +Q+  +     S    + F+ +L +G+R  ++C      +     +
Sbjct: 177 KGVRKERPVADEETVQKMIAALETQSMKYEVYFKLVLATGMRRGEACGLRWSDIDWRHRT 236

Query: 224 IKTQKTGTI-----------------ITVELPDGFMKLLAMTPIGKETFF---------- 256
           I  Q+T                      V +     KLL                     
Sbjct: 237 IHVQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWKQECAWQMEQAEGQTLTE 296

Query: 257 -----INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
                       M  T F+  FK    + G+    S H +R  +A++    G     +  
Sbjct: 297 EDYLFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAG 356

Query: 310 TYGWKTVDQA-ETYTKGADR-IRLGIKNSRRISSV 342
             G        + Y    D+  R   +   ++  +
Sbjct: 357 LLGHSQPSTTLDIYAHAFDKTKREAQEKLGKVMRL 391


>gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
 gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353]
          Length = 415

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 96/408 (23%), Gaps = 77/408 (18%)

Query: 12  TKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R R     YYF+    +G R         T   A  +             + +    
Sbjct: 7   VSTRKRGKTWQYYFQLASVNGTRKWKTGSGYRTKAEAQATGTKALAEYNSTGIAFKVSEQ 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           ++      + +      LA  +  +++      I    G +  + +  + +R+ +     
Sbjct: 67  SVADYFDYWMEHYVEQELAETTVNTYKKRIRLYIKPYIGSYKLKNVQGETLRNFLAELHR 126

Query: 129 TPSSAIQ---FLTSMRVLFKWAVRQ---------EYVAINPCLSVERPKRKTEGIRPWTK 176
           T  S          +   F +A  Q           + +           + E      +
Sbjct: 127 TGMSRNTLTCIKGMLTSAFGYATVQAKFISVDPSYKLTLPNKRKDSEVGTRKENHIFVEE 186

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           +        + EG    LA     Y GLR  +        +     +I   K        
Sbjct: 187 DMWNAIIERFPEGHPSHLALMLGYYCGLRLGEVYGLTWDCVDFENKTITINKQMQEPSGC 246

Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                       T+E      +            +       ++
Sbjct: 247 GKWLLYVPKYDSSRTVTVGNNVLALLKRTLEFQLTDKETCGEYYQENYMNYDEETHSLLS 306

Query: 266 ATQFSIWFKAKATKAGV--------------------------NKSAHGVRKFSATISAD 299
                      A + G+                              H +R   ATI  +
Sbjct: 307 LNDLRPVHFVNAKQGGLLAHPRNMQHTSRSIHGKAKNCTLISEEWDFHSLRHTHATILYE 366

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AG     +    G   +   + YT    +  L +     +  V++ D+
Sbjct: 367 AGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSM-----LDEVINGDN 409


>gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
 gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10]
          Length = 303

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 24/283 (8%)

Query: 72  KWLISE-YRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESR-- 126
             ++   Y +        + ++   ++       +          +  + IR  +     
Sbjct: 9   DAVLERDYMRYLQIEKGASPSTISQYQKDICAFFQNMDHTKPVEDVNHQDIRRYLALLQK 68

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +   +  + L S+R L+++  R+  + +NP L V  PK   +      + +MQ     
Sbjct: 69  DGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDA 128

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
                  G++     E L  SG+R S+     ++ +  ++ ++    K      + +   
Sbjct: 129 IDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSF 188

Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            ++ L                 +  FIN     +               A +    + H 
Sbjct: 189 AVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLTPHV 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 249 IRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLR 291


>gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2]
 gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1]
 gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.2]
 gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1]
          Length = 362

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 3   IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 59  -SMTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 118 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 177

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 178 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 237

Query: 228 KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L     T       F +     M  +    W         + +
Sbjct: 238 TKSSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 298 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 342


>gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 366

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 78/269 (28%), Gaps = 15/269 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131
             Y +       + ++  ++ +YF   +      +   +    I   +      +K + S
Sbjct: 92  EGYLELLEQKRYSPSTIKTYRAYFSDFMEYHKGRNIDHLKVADINKYILYLVNEKKISVS 151

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + +++    +  + +         + R K         ++ ++ +         +
Sbjct: 152 QQNMRINAIKF---YYEQVKGGKRQYYGGITRAKEYKSLPEVLSRNEVARIL-ACLSNRK 207

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246
            R     +  +GLR S+      + + +    ++    G      L          +   
Sbjct: 208 HRCMISLIYSAGLRRSELLNLTPKDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYFK 267

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304
                K  F      ++ +A+      K  A++AG+    H   +R   AT   + G   
Sbjct: 268 EYRPQKWLFEGETPGEQYSASALVKILKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDL 327

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333
             +    G   +     Y       +  I
Sbjct: 328 RTIQELLGHNDIKTTSIYLHVTSAHKSSI 356


>gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 115/380 (30%), Gaps = 51/380 (13%)

Query: 13  KERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--YINSPRKKP 68
           + + ++ K  + F                          A       +      S +K+ 
Sbjct: 6   QYKDKNNKRKWLFSGYVATDPITEKKIVTTRKGFDTKAEARLEFDKLKASILKGSKKKRT 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T + L  ++ +     S+  ++  +   + +  ++ K G     +IT    +  V    
Sbjct: 66  ITFQELYDDWLEQHR-KSVKSSTVATNRRFIEGHVLPKFGKLKLDQITVSFCQKCVNEWH 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                      +   +  + V  E +  NP      P++K E  +P      +  +    
Sbjct: 125 DKYKQYHYIRRATAQVMNYGVSMELMESNPMKKTILPRKKEEEKKPNFYSKDELHEFMTF 184

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226
               +  +    F  L  +G+R S++    ++ L     +                    
Sbjct: 185 VKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDLNIFNKTLTIGKTIAIDEYDQVVLQTP 244

Query: 227 QKTGTIITVELPDGFMKLLAMTP------------------IGKETFFINNDKQKMNATQ 268
           +   +  T+ L D  +++L                          +   N+         
Sbjct: 245 KTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFSNMSNDLYYPQVIND 304

Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           +  W   KA K G+     S HG R  + ++  +AGAT +E+    G K V      Y+ 
Sbjct: 305 WLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSH 364

Query: 325 GADRIRLGIKNSRRISSVVD 344
              +       S+++++ + 
Sbjct: 365 VTPQQ--AENTSQKLANYLG 382


>gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
 gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136]
          Length = 388

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 112/385 (29%), Gaps = 43/385 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIR-------LPYPHESTFIPAYMSALTGST 55
             + P  + + +T  G I  Y     +G+R         +P  +         +      
Sbjct: 3   KSKEPIRLRQRKTASGNITLYLDIYLNGKRSYEYLKLYLIPETNRKDKEKNRQTLQLAEA 62

Query: 56  PKREYINSPRKKPTTLKWL-------ISEYRKSAHWGSLAVNSRISFESY---FDQIIRK 105
            K + +   +                +  YR           SR ++ ++      + R 
Sbjct: 63  IKAKRVVELQNGEYGFNAAYKLETNFLDYYRAMCEKRHGNPESRGNWGNWYSCLKHLERY 122

Query: 106 S-GDFDYRKITTKHIRSGVESRKH-----------------TPSSAIQFLTS---MRVLF 144
              +  ++ IT + I    E                      P S    ++    +R   
Sbjct: 123 CKPNTTFKDITPEWIIGFREHLDKNARCRDKRKIITTEEVTKPLSQNSKVSYFNKLRACI 182

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             A     +  NP   +E  K+        T E+++   +   +    + AF F   +GL
Sbjct: 183 NQAFEDRIIPHNPLRGIEGFKQAETERSYLTLEEVKAMAAAQCKYPALKNAFMFSCLTGL 242

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R SD  +   + +Q      +          +      K        +            
Sbjct: 243 RKSDIEKLRWREVQQQGDFTRIIFKQKKTGGQEYLDINKQAVQYMGVRREPDDRVFVGFK 302

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +       +  A +AG+  + + H  R   A +  D GA  + +    G K +   + Y
Sbjct: 303 YSAYMIAELRMWANRAGITKDITFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIY 362

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
            K  D+ +   +    I  +  +DD
Sbjct: 363 AKILDKKK--QEAVAMIPDIFGADD 385


>gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 280

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGV 123
           LK  I  +          +  S  ++E              + G      IT        
Sbjct: 6   LKEYIETFLDYLLDVRGYSEVSVTTYEIALRQMSGVSHFYEEDG-ISVLDITPFR----F 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K++  + ++ L+++R   K+   Q  + +           ++        E+    +
Sbjct: 61  NIVKNSKKTIVKKLSAVRSFVKYLEDQCNIPVKLIADESIKVPQSLPK---PIEEQYIEE 117

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + +L    L   GLR S+     ++ ++         K   +  + L     K
Sbjct: 118 VLAKANVEEKLLISMLYGLGLRISELSGLKLEDIKGEWIQ-IHGKGNKVRELPLMKSLQK 176

Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           L+   M   G + +        MNA Q          K G+  + H +R   AT   + G
Sbjct: 177 LIGVYMDQNGPKRYLFEKGNAPMNAAQLRYKLTKLFKKEGLKVTPHQLRHSFATHLLNHG 236

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A   ++    G +T+   + YTK     ++
Sbjct: 237 ARIADVSELLGHETMATTQVYTKLGSVKKM 266


>gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD
 gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 323

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 96/306 (31%), Gaps = 32/306 (10%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----- 106
               +R     P +        I  +         +A  +  S+    + + R       
Sbjct: 7   AERRQRAQQLPPLRAED--DQAIQRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGG 64

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G     +             ++ P S  + L+++R  +   +R    + +P   ++ P+ 
Sbjct: 65  GLQGADRSALFDYLRWRTEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRL 124

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                +  T+  +    +    G+    + R   E +  +GLR S+        +     
Sbjct: 125 PRSLPKALTESQIDALLAAPEIGTPLGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQG 184

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMN 265
            ++          V L +     L                     G+   FI+  ++ ++
Sbjct: 185 VLRVTGKGSKERLVPLGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLS 244

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             QF    K  A  AG++    S HG+R   AT   + GA    L    G  ++   + Y
Sbjct: 245 RQQFWGLVKRYAAVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIY 304

Query: 323 TKGADR 328
           T  A +
Sbjct: 305 TLVARQ 310


>gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
 gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum
           BKT015925]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 102/312 (32%), Gaps = 46/312 (14%)

Query: 62  NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRK-------------SG 107
              R+K  TL   ++ +   S      ++ +   +E       R                
Sbjct: 8   EDIREKTDTLPQCMTSFFNYSETIKGNSIGTIKGYEVDLTMFFRFLKIYKNLVPNKLEFE 67

Query: 108 DFDYRKITTKHIRS------------GVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVA 154
           +     I    ++               + R ++ ++  + +++++  FK+   + + + 
Sbjct: 68  EIPINDIDYNFLKELKLTDLYAFMSFTEKYRNNSSNTRARKVSTLKAFFKYLYGKIKVLD 127

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRA 212
            N    +E+PK +       T E+ ++  S        +        L  GLR S+ C  
Sbjct: 128 YNIAEELEKPKLEKRNPIYLTLEESRKLLSVIDGKNKERDYCILNIFLNCGLRISELCSI 187

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------------FINND 260
            +  ++ +  +    K     TV L    M  +      + +             F+N +
Sbjct: 188 QISKIKEDTLT-VIGKGNKERTVYLNKACMDSITDYLKVRNSCKARVPLEDKDILFLNKN 246

Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD-AGATAHELMATYGWKTV 316
              ++        K    KAG++    + H +R  +AT+     G    +L    G +++
Sbjct: 247 YGHISKRSVEKLVKKYVEKAGLDTTKYTPHKLRHTAATLMFKYGGVDIRKLQLILGHESI 306

Query: 317 DQAETYTKGADR 328
              + YT   + 
Sbjct: 307 STTQIYTHVDNE 318


>gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
 gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K]
          Length = 343

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 90/286 (31%), Gaps = 30/286 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132
              Y  S      + ++R +++    Q      D        +   +R  +  +     +
Sbjct: 19  FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 76

Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               + L+++R L+++ VR+     NP  +V  PKR         +E++          +
Sbjct: 77  VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAT 136

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
                 + R   E L  SGLR S+     ++ L      ++   K      V       +
Sbjct: 137 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAE 196

Query: 244 LLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            L                     +  F+N    ++ +   +         +G+ +    H
Sbjct: 197 ALRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 257 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301


>gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 314

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 80/284 (28%), Gaps = 30/284 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126
             ++  S      + ++   +       +    +             +     R+ +  R
Sbjct: 21  WRQWLGSE--KRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFRAFLARR 78

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  SS  + ++++R  FK+  R   V      +V+ P+      +P   ++  +  
Sbjct: 79  TQDGLGRSSLARLMSTLRGFFKFLDRHGLVHNPAIKAVKSPRPPKSIPKPLAPDEALEAL 138

Query: 184 -------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                        ++    F  L  +GLR  ++     + L      + T K      V 
Sbjct: 139 SSAGELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRDLPKGDTMVITGKGNKQRVVP 198

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVN--KSAH 287
           +       +A           + D          +N        +      G+    + H
Sbjct: 199 VLPVVRDAIADYLKRLPFPSESTDPVFLGARGGPLNPGVVQRQMRRLRQVMGLPDTATPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 259 ALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301


>gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424]
 gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 294

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 101/263 (38%), Gaps = 16/263 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRKH 128
            L+S +         +  S+ ++ S+  Q +   G    +++  +     + S   S+++
Sbjct: 25  QLVSIWLA-----GKSKTSQNTYASHIKQFLEYVG-KPLKELKLEDMQLWVSSLENSQRY 78

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187
             ++    + +++ L  +  +  Y+  N   +V+ P  K E   R  ++ ++       +
Sbjct: 79  KTATLKLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIEKAN 138

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKL 244
           +  + R+  + +   G+R S+      + L  N      I   K G    V +P+     
Sbjct: 139 QNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEKLWLD 198

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           +   P   +  FI+  K +++        K  A +AG+N   S H +R   AT S + G 
Sbjct: 199 IQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSHATHSIERGC 258

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
             H L  + G   +     Y   
Sbjct: 259 NLHLLQQSLGHSNLSITSRYLHA 281


>gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 368

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133
           Y +       ++++  +++ YF   +      D   +T + I       V+ +  + +  
Sbjct: 96  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  ++   + +          +            ++E+M+          + R
Sbjct: 156 NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 211

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248
                +  +GLR S+      Q + +    I+    G          +L +         
Sbjct: 212 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREY 271

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              K  F      ++ + +      K  A KAG+      H +R   AT   + G     
Sbjct: 272 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 331

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +     Y   ++
Sbjct: 332 IQELMGHTDIKTTAIYLHVSN 352


>gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
 gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244]
          Length = 310

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 27/281 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126
           + L+S + K     + + ++  +++       +           +    +R  + SR   
Sbjct: 9   EKLLSMWLKERVIQNQSAHTISAYQRDLTDFFKFCEYKQLQLEDVEASDLREYLASRVEQ 68

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + + SS  + LTS+R   KWA +  Y+  NP    +  ++          E + Q    
Sbjct: 69  DQLSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMIDIETVNQILDQ 128

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        + +   E L  SGLR ++     ++ +  N   ++          V 
Sbjct: 129 TAPEKLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVP 188

Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                 + L         +          FI+   + +   Q     K +A +AGV  + 
Sbjct: 189 FGLKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRAGVNVDL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R   A+    A      +    G   +   + YT  
Sbjct: 249 HPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHV 289


>gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 295

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 88/280 (31%), Gaps = 26/280 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESRK 127
           +  + +       L+   ++S     ++  R   + D   +    I         ++ R 
Sbjct: 5   LERFIRFLAAEKGLSTAYQLSVRQTLEEFARFL-EMDNTGLAQTGIDTLSAFLRHLQDRG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
              SS    +  +R+ F+W      +  +P + +E P++         ++ +        
Sbjct: 64  MARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESID 123

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                 G + R   E +   G+R S+     ++    +   ++   K      V +    
Sbjct: 124 IQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSA 183

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289
           +  L M              K   F+    + +   +     + +A  AG+ +    H +
Sbjct: 184 LDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVFPHIL 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT    + 
Sbjct: 244 RHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQR 283


>gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
 gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1]
          Length = 293

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 89/267 (33%), Gaps = 11/267 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
            ++ E+  S    + +V +  ++  Y ++      +     +++  I    +      + 
Sbjct: 18  EVVGEFLLSLKLANCSVETVRTYRWYLEKFFENREESFLT-LSSDTIHQWFQKYDGVKSD 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L  +   + + V +E +  +P  +   P+      +   K ++ + +    E +
Sbjct: 77  ATVKLRLCILSSFYNFCVIEELLEKSPIKTRWLPRLPQPIPQYLGKSELAKTRKQTEEST 136

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + R+  EF+L SG R S+        +     + +    G  I          +L    
Sbjct: 137 LRNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHFSEKCAILMERY 196

Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                   E  F+  + +++              +A ++K    H +R   AT     GA
Sbjct: 197 LTDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFPHRLRHTFATELLSKGA 256

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + Y +   + 
Sbjct: 257 ELSFIADELGHTDIRTTQIYARLPKQE 283


>gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 384

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 112/365 (30%), Gaps = 56/365 (15%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G   Y  Y+   +G + +L      T+  A          +     S      +LK  
Sbjct: 7   KKGNNYYIRYYETINGVKKQLERKGGYTYAEAEKKLNEIIYKQNNGYVSS---NMSLKKY 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           ++ + +     + +  +   +       II   G+     +   HI   +   ++T    
Sbjct: 64  LNMWLEEYIKTNYSQRTYEIYLDTVEKHIIPIIGNIKLSDLKVVHIEKYLNHLRNTKTIN 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++A     ++      A++ + +  NPC  VE PK+        T E+ ++        
Sbjct: 124 GTTANLHFRNLNTALNRAIKLQLLTNNPCTYVEPPKKNKFKGNYLTVEEFKKIYDSMIVN 183

Query: 190 SQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +   ++F+ LL     +G R  + C        +   +  T +   I T        KL 
Sbjct: 184 NYLNMSFKTLLNLAVETGCRRGEMCGLEWDKDIDLHNNTITFRRALIRTNSSGWIMGKLK 243

Query: 246 AMTPIGKETF---------------------------------------FINNDKQKMNA 266
             +                                               I  + + M  
Sbjct: 244 TQSSYRCLPISDFLSKQLKELKKEQMKNKLLFGEEYCKNIFNGIEYNLVCIQRNGKYMCP 303

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           T  +   +A   +  +NK    H +R  SAT+  ++G     +    G  +++     Y+
Sbjct: 304 TDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYS 363

Query: 324 KGADR 328
              ++
Sbjct: 364 HVTEK 368


>gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A]
 gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206]
 gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A]
 gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68]
 gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    +         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|307692278|ref|ZP_07634515.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 527

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 120/376 (31%), Gaps = 45/376 (11%)

Query: 1   MTPSLRLPPFVTKERTRH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M    +      + R      G+++  +      + +           A +  L G    
Sbjct: 1   MAGKRKKGEGTVRLRKDGRWEGRVVVSYDASGNPKTKNVLAKTKKECVAKLEKLKG--EC 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
               ++  +     +  ++E+ ++     L   +++ +E +    +I   G+    ++T 
Sbjct: 59  GSVRSTQVRPDMLFRDWLNEWYQNDAKPRLRPTTQLQYEGFLQHHLIPGLGEIPLNQLTQ 118

Query: 117 KHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWA----VRQEYVAINPCLSVE 162
              +      K          + P  A + + S   + + A    V ++ +  NP +  +
Sbjct: 119 GEFQQFFRHMKENGRKVQVERYGPGMADRSVRSCHAVCQMALDKAVEEKLIHANPAVGCK 178

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  K + ++  T E++Q+F           L F   L +G+R  +        L     
Sbjct: 179 LPPLKGKEMKILTLEEIQRFLIRAKAEGMYEL-FLLELTTGMRRGELLALRWDDLDFVTG 237

Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMT----PIGKETFFINNDKQ 262
            +   K                     T+ LP   ++LLA                  +Q
Sbjct: 238 KLHIDKQVYPVGGKLVISEPKTKAANRTIILPPAMVELLAEYKKGVFSDLMFPSRTKPEQ 297

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            ++        +    +AG NK   H +R   AT+S + G     L    G  + +    
Sbjct: 298 PIDPCYVRKRLQVILKRAGCNKVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLN 357

Query: 321 TYTKGAD--RIRLGIK 334
           TYT   D  R +  + 
Sbjct: 358 TYTHITDDMRRKAALN 373


>gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
 gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 28/281 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPS 131
           Y +     + +  +  +++           +       D R +  +   + +  ++++ S
Sbjct: 17  YLE--KERNYSAYTVAAYKQDIHDFQTFLKEEIIESLTDVRYLEVRVYLTRLREKEYSRS 74

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  + L+S+R  + + +R + +A NP   V   K      + +  E+M+   +   +   
Sbjct: 75  TVSRKLSSLRSFYTFLLRDQQIAENPFSYVSHSKNHLRLPKFFYSEEMEALFTVVYQDDK 134

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG----- 240
               + R   E L  +G+R S+     +  +     SI    K      V          
Sbjct: 135 LLTLRNRALLEILYGTGIRVSECADIRLADIDATYQSILIRGKGNKERYVPFGAYAEDAV 194

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                     L+       +  F+N+    +               A +      H +R 
Sbjct: 195 QLYLEASRKALMEKYHKEHDYLFVNHYGDPLTPRGIRYCLSKTIESAAMTRKIHPHMLRH 254

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   + GA    +    G  ++   + YT         
Sbjct: 255 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKA 295


>gi|328542142|ref|YP_004302251.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326411892|gb|ADZ68955.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 403

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 107/372 (28%), Gaps = 44/372 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPT 69
            + R+ +G   Y  R             +        +  T +  +R  + +  P  K  
Sbjct: 6   KRVRSDNGDSYYRVRVRVRGLPEKQKTFKRLTDAKLWAQQTEAAIRRGEVQNVVPAAKGK 65

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           TL  +I  Y+K       A +++ +  +Y     +  G +    IT + I + +E     
Sbjct: 66  TLADVIERYKKRVLPHR-AESTQRAAVTYLAYWEKALGTYGLTYITAELIEAELEKLAAA 124

Query: 128 ----------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                            +  +   +  ++ +L K A    +   NP   V       +  
Sbjct: 125 GDTRRKSDEGEPAGKPKSRKTIKHYRDTLALLMKHAKAWGWATQNPMEGVTPITNIRDER 184

Query: 172 -RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
            R  +  +              +L     F L +G R S+     +  +         + 
Sbjct: 185 TRFLSDAERAVLLDACKASDNDQLFNIVVFALSTGARKSEILGLTLADVDLQRGSAIFRD 244

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----------QFSIWFKA 275
            K G      L      LL       E  +                           ++ 
Sbjct: 245 TKNGDTRAAPLARHLRDLLTGQVAKAEALYAALPHAPKTRWLFPRADGVLPIDIRTAWEN 304

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              KAG+ +   H +R  +A+  A  GA+  E+    G +T+     Y        L   
Sbjct: 305 ARDKAGLVDFRFHDLRHSTASYLAMKGASLVEIAEVLGHRTLQMVRRYAH------LSES 358

Query: 335 NSRRISSVVDSD 346
           + + +   +  D
Sbjct: 359 HVKGLVESLGED 370


>gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 296

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 19/276 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE---SRK 127
           +SE+         ++ ++  ++      +   + D        +  + +R  +     R 
Sbjct: 8   VSEFLAYLRVERRMSAHTLDAYRRDLAALTTWAADNLLGEPAALGAEQLRQFIAAEHRRG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            +P S  + L++ R  + W ++  ++  +P  ++  PK   +  +    ++  +      
Sbjct: 68  LSPKSLQRRLSACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVEVPT 127

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMK 243
               G + R   E    SGLR S+ C    + L           K G    V +     K
Sbjct: 128 DVPLGLRDRALLELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGKQRLVPIGSHARK 187

Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            L+              F       + A    I  K  A + G+  +   H +R   A+ 
Sbjct: 188 ALSEWREEHCADAAAPVFPGRGGVPIGARAVQIRIKQLAARQGLFKHVHPHMLRHSFASH 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G   +   + YT   D   L 
Sbjct: 248 ILESSGDLRGVQELLGHADIATTQIYTH-LDFQHLA 282


>gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 327

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 92/290 (31%), Gaps = 30/290 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRS 121
           LK  + ++          +  +R ++     Q +              D  ++ TK  R+
Sbjct: 25  LKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFRA 84

Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  R+ +     S  + L+S+R  F+W  R+  +     L V  PK      +P T + 
Sbjct: 85  FLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVDG 144

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTG 230
                  +         ++       L  +GLR S++         L        T K G
Sbjct: 145 AAELVATKNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHITGKGG 204

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN 283
               V       + +A                F+      ++     +       + G+ 
Sbjct: 205 KDRLVPALPIISEAIAKYMRLCPFPLSGDGPLFLGARGGPLSPRLIQLAMARMRRELGLP 264

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT    AGA   ++    G  ++   + YT   DR RL
Sbjct: 265 ETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYT-EVDRDRL 313


>gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12]
 gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12]
          Length = 277

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 17/254 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRKHTPSSAIQFLTSMR 141
           + ++  ++      +I   G         +    +++       R  +P S  + L++ R
Sbjct: 2   SAHTLDAYRRDIGALIAWGGQQVVGDVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSACR 61

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198
             + W V+  ++A+NP   +  PK   +  R    ++     Q  +    G + R   E 
Sbjct: 62  GFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252
              SGLR S+ C      L  +        K      V +    +  L           +
Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
           +  F       ++A    +  K  A + G+  +   H +R   A+   ++      +   
Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241

Query: 311 YGWKTVDQAETYTK 324
            G   +   + YT 
Sbjct: 242 LGHADITTTQIYTH 255


>gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 316

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           LI E+          + ++  ++        + II      + + +    I+        
Sbjct: 25  LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 84

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  + ++S++  F+WA  ++  A N   ++  PK  ++     +++ + Q   
Sbjct: 85  QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILG 144

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
            +S        +    FE L  S +R S+     +  + +++ +++          V   
Sbjct: 145 NFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFG 204

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                 L +    + T   +            +++N                  +  H +
Sbjct: 205 KPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVL 264

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R  +AT   D GA    L    G  ++   + YT  +
Sbjct: 265 RHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVS 301


>gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 277

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 17/254 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRKHTPSSAIQFLTSMR 141
           + ++  ++      +I   G     +   +    +++       R  +P S  + L++ R
Sbjct: 2   SAHTLDAYRRDIGALIAWGGQQVVGEVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSACR 61

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEF 198
             + W V+  ++A+NP   +  PK   +  R    ++     Q  +    G + R   E 
Sbjct: 62  GFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLEL 121

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG-----K 252
              SGLR S+ C      L  +        K      V +    +  L           +
Sbjct: 122 FYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGAQ 181

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
           +  F       ++A    +  K  A + G+  +   H +R   A+   ++      +   
Sbjct: 182 QPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQEL 241

Query: 311 YGWKTVDQAETYTK 324
            G   +   + YT 
Sbjct: 242 LGHADITTTQIYTH 255


>gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
 gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y         L+ ++   +    D ++  +       +    +R   +   +   + 
Sbjct: 6   IAAYLSYLQHVRQLSEHTLRGYAHELDALLALADGRPLASLGAADMRGAVARAHAGGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186
            S    L++ R  ++W   +  +  NP  +V  PKR     +  + +D    M+      
Sbjct: 66  RSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMESPFPDT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIIT 234
            EG +     E    SGLR ++     V + Q + +   +                    
Sbjct: 126 PEGLRDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVSVLGKGGKERK 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVN--K 284
           V +    ++ L      +  +   +           +M+        K  A  AG+    
Sbjct: 186 VPVGRKALEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPGVVRERVKRAALVAGIPANV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 292


>gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
 gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 84/293 (28%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ K+      L+ N+  ++E    Q +                G+     + +
Sbjct: 15  LAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +   +      +  + L  +R L +   ++         ++  P++     +P T 
Sbjct: 75  --FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQ 227
           ED ++  +            ++       L   GLR S++       L ++       T 
Sbjct: 133 EDARRVVAADGQLAEEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALSITITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280
           K      V L     + +A            +      A              +      
Sbjct: 193 KGNKARLVPLLPVVHRAVAQYRTLCPFDLSADKPLFRGAKGGILHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304


>gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
 gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987]
          Length = 431

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 109/328 (33%), Gaps = 46/328 (14%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
               Y          +  I++    P  +   ++ Y K+      + N+   ++S  + +
Sbjct: 94  LKKEYDLDKYNEKNLKFEISTESNTPIRVNEFLN-YLKNI--KGRSPNTVKGYKSNLNLL 150

Query: 103 IRKS----GDFDYRKITTKHIRSGVES--------------------RKHTPSSAIQFLT 138
            +       +     I    IR+  ++                    RK+   S  + + 
Sbjct: 151 FKYLVSLKENTPGTDIENVCIRNVDDTFIKNITLMDLYNFLSYVDEVRKNGSYSRARLVA 210

Query: 139 SMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193
           +++  F +   + + +  N  L +E PK +       T +  +   +   +      +  
Sbjct: 211 AIKSFFLFLNSKLKIIDENIALELEFPKIEKRLPVYLTLDQAKAVLNSMDKTKRYYYRDY 270

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248
             F   L  G+R S+ C   +  ++ ++ +I  +      T+ L    +K +        
Sbjct: 271 CIFTLFLNCGMRLSELCGIKISDIRGDLLTIIGKGN-KQRTIYLNSECLKSIHDYLNVRG 329

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301
               P   +  F++   ++++        K     AG      + H +R  +ATI    G
Sbjct: 330 RGNTPEEDKYLFLSRIDKRISNRGVEKLVKKHIENAGFTDKKYTPHKLRHSAATILYKYG 389

Query: 302 -ATAHELMATYGWKTVDQAETYTKGADR 328
            A    L A  G +++   E YT   D 
Sbjct: 390 NADIRSLQAILGHESIATTELYTHVDDE 417


>gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330]
 gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1
           str. 9-941]
 gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar
           Abortus 2308]
 gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189024985|ref|YP_001935753.1| Phage integrase [Brucella abortus S19]
 gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC
           23457]
 gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6
           str. 870]
 gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3
           str. Tulya]
 gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str.
           513]
 gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str.
           686]
 gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M163/99/10]
 gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           B2/94]
 gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1]
 gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4
           str. 292]
 gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis
           M292/94/1]
 gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3
           str. Ether]
 gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1]
 gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94]
 gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9
           str. C68]
 gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99]
 gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC
 gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330]
 gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365]
 gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19]
 gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038]
 gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40]
 gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292]
 gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870]
 gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68]
 gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya]
 gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94]
 gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1]
 gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94]
 gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10]
 gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99]
 gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513]
 gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686]
 gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1]
 gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
 gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9]
 gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1]
 gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026]
 gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196]
 gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1]
 gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28]
 gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 75  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. 16M]
 gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC
 gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M]
 gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 75  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQLLFRGAKGGPLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13]
 gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
 gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13]
 gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2]
 gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 75  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
 gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1271]
          Length = 378

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 52/378 (13%)

Query: 15  RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R     +    G     G+R +       T   A  +A T  T   E       K  T
Sbjct: 6   RKRGNAWSFTIDIGIDPTTGKRQQKSKSGFRTKKEAQNAAATRITEI-EKGIYFDDKQLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +  +  K      L      S+E         I+        + I    I+S     
Sbjct: 65  VLDVWEK-LKPLRKAELK---ITSYEKDMSLVKLYILPPFSYKKIKSIKPVMIQSYYAEL 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K       +       +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F 
Sbjct: 121 KEKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221
            +  E   +  + F   +Y+G+R  +      + +  +                      
Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAI 240

Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                      S                 F +           F  N     ++      
Sbjct: 241 KTKSSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHR 300

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +      KAGV +   H +R   AT+   AG     +    G  ++    + Y+      
Sbjct: 301 FLNDHYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359

Query: 330 RLGIKNSRRISSVVDSDD 347
            +  + +    S++ S++
Sbjct: 360 -MQQQAAENFESIIKSNE 376


>gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21]
 gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 382

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 101/346 (29%), Gaps = 33/346 (9%)

Query: 10  FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            +   + ++G   Y    Y     G+R  +     ST   A  + +       +  +S  
Sbjct: 22  RIESYKKKNGTTAYKFLLYAGYVDGKRKYIRRSGFSTRQSARAALINLQAELEKPKSS-- 79

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T   L  ++ K             +  +    I+ K        I    +++  E 
Sbjct: 80  ---MTFGMLTKQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVTIGDINPLLVQNLTEE 136

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQ 180
                    + L  +R +   AVR  Y++ NP L +  PK K E           +    
Sbjct: 137 WCSQLKYGGKILGLVRNILNLAVRYGYISNNPALPITAPKIKRERKTGNNFYTLNQLKQF 196

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKT 226
                 ++  +    F  L ++G+R  +        L  N                   T
Sbjct: 197 LELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNRNTLSINKAVTRTQTGLEIDVT 256

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN 283
           +   +   + L D  +++L        +       +    M  +    W         + 
Sbjct: 257 KTKSSDRLISLDDETLEILQQLHETFPSSTFMFQSESGGIMTPSLPRKWLLQIIKGTDLP 316

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           + + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 317 QITVHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 362


>gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100]
          Length = 276

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 27/266 (10%)

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSAIQFLTSMRVLFK 145
           +++   D+     G+ +   +T+  I   +   ++          SSA + L S+R L  
Sbjct: 3   NYQRDIDRYQEWLGEREIADVTSNDIEQHLVWLQNDEPGHKGIARSSAARALASIRSLHD 62

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEF 198
           +  R++ +  N  ++V  PKR +   +  T E +          +       + R   E 
Sbjct: 63  FGEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDATPNDAAASLVDIRDRAVLEM 122

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           L  +G R S+     V  +      +    K      V L     + L    +       
Sbjct: 123 LYSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYVVRARPAMN 182

Query: 258 ---------NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                    N    +M            A +AG+   + H +R   AT     GA    +
Sbjct: 183 KKGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLPPVNPHALRHSFATHLLQGGADVRVV 242

Query: 308 MATYGWKTVDQAETYTKG-ADRIRLG 332
               G  +V   + YTK  AD +R  
Sbjct: 243 QELLGHSSVATTQIYTKVTADHLREM 268


>gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1]
 gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1]
          Length = 283

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 22/273 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           +  +  +         +  +   ++    + +   G     ++T   I            
Sbjct: 6   ESYVENFVSYMVGERKSKYTIKEYKFLVSKFLAFVGKTP-AEVTPMDIERYKTFLASKAH 64

Query: 131 -SSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S A Q+L   ++++ +K    +  V + P      P+R         +E+  +  S   
Sbjct: 65  YSKASQYLAIKAIKLFYKSLDLRYPVNLTP------PRRSMHMPVYLNEEEASRLLSASK 118

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245
           +  +       L Y+G+R  + C   +  +     I  +K+ K      V +P+  +  L
Sbjct: 119 KSVKYSAVISVLAYTGIRVGELCNLRIGDVDMQEGIIYVKSGKGDKDRIVVMPNECVSAL 178

Query: 246 AMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                         +  FI+N K + + +      K  + +AG+NK  + H +R   AT 
Sbjct: 179 KEYLNWRISVETPHDFLFISNKKSRYDPSTVERMVKRLSQEAGINKRVTPHVLRHTFATS 238

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               G     +    G  +V   + YT   D  
Sbjct: 239 VLRNGGDIRFIQQILGHSSVATTQIYTHLDDNA 271


>gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 476

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 117/384 (30%), Gaps = 50/384 (13%)

Query: 14  ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++ ++G+     RK              + + +     +       + L     +    +
Sbjct: 6   KKRKNGEGTLRLRKDGRWEGRIVVGYNEKSLPITKCVTAKTKTECSTKLEALKEQYGRSS 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
              K        I  + ++    +L + +R  +E   ++ II + G     +++   ++ 
Sbjct: 66  DKIKPDMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRLSQSDLQQ 125

Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                             +  +  +      + R   + AV++  +  NP +  + P +K
Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLPPKK 185

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              ++  T+ ++ +F     E     L F   L +G+R  +        L      ++  
Sbjct: 186 AREMQVLTQNEIIRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIG 244

Query: 228 KTGTIITVELPDGFMK--------------------LLAMTPIGKETFFINNDKQKMNAT 267
           +   II  E+     K                                   ++ +  N +
Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLIKTLAVYKETVDSEWMFPSPTDNGRPRNPS 304

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                 +    +AG  K   H +R   AT++ + G     L AT G  +     + Y+  
Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364

Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348
            D   R    +  R     D+  P
Sbjct: 365 TDTMQRQAAVHIDRKIGGTDAQMP 388


>gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
 gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753]
          Length = 314

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 91/299 (30%), Gaps = 41/299 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH--------IRSGV 123
              +  +   +        R                +     IT           +   +
Sbjct: 5   KGKSPKTVQEYFFDLRTFFRYMKIKKNLTAADTEFSEIPIDDITIDFLSMVSLTDVYEFM 64

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 R++  ++  +   S+R  F++   +   +  NP   +E PK+K    +  T E 
Sbjct: 65  NFVTIERENKNAARARKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPKYLTLEQ 124

Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                +      + R      L+   GLR ++     +  ++ +     T K      + 
Sbjct: 125 SIDLLNAVDGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDHTMRVTGKGNKERMIY 184

Query: 237 LPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN---K 284
           L     K +      +             I++  +++         +    K G++    
Sbjct: 185 LNSACQKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIVQKYLKKIGLDGQGY 244

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           SAH +R  +AT+    G      L    G + +   E YT  +++      ++  +S V
Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAADANPLSKV 303


>gi|114775560|ref|ZP_01451128.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114553671|gb|EAU56052.1| site-specific recombinase, phage integrase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 331

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 12/322 (3%)

Query: 11  VTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + K + ++G+  Y  +    G+ +             + + +     + +++++   + T
Sbjct: 3   IQKRKWKNGRTTYRVQVYHRGKVVADATFDFRRDAQLFEAEVKTKLQRGDFVDTRLAERT 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
                +  Y ++           +S      +           KI T  I    +SR  +
Sbjct: 63  LFGEALERYAENIVPRKKGARQEMSRVRTLSR--SSLVRLPLSKIRTPDIIKYRDSRLKE 120

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             P+S    L  +  LF  A R     Y++      V    ++T   R     +  Q   
Sbjct: 121 VGPNSVRLELAVISHLFTVASRDWGMNYLSNPVARGVMPSVKQTARDRRLQPGEEDQLMQ 180

Query: 185 FWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
              E G        F L + +R ++      + +  NI  +   K G    V L     +
Sbjct: 181 ACKEYGGVIGDIVMFALETAMRRAEIASLRWEDIHGNIARLHDTKNGERRDVPLSSRARE 240

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           ++      +                 S  F      AG+ +   H +R  + +   + G 
Sbjct: 241 IIHRRAKVRSLNDKRVFGIA--PNGISQAFSRVCKHAGIVDLRFHDLRHEATSRLFERGL 298

Query: 303 TAHELMATYGWKTVDQAETYTK 324
              ++ +  G KT+   + YT 
Sbjct: 299 NPMQVASITGHKTLQMLKRYTH 320


>gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 103/356 (28%), Gaps = 28/356 (7%)

Query: 6   RLPPF--VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            LP    +   +T  G   Y FR    +   L   +  +   A   A     P     + 
Sbjct: 29  NLPKGFRIEIRKTSKGIGTYRFRTK-VKDHNLGRTNALSLEQALQQA-AQLIPSPTPPHI 86

Query: 64  PRKKPT---------TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
           P   P          TL     +Y        L   +  + ES +  +I    G      
Sbjct: 87  PLSPPIAQASPTCTFTLNEFWEQYYWPHIKTRL--RTCRNIESMWRIRIQPTFGHQRLDD 144

Query: 114 ITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           I    +          + + S     +  +  +F  A++ E +  NPC  VE  K   + 
Sbjct: 145 IKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITKNPCDKVEYMKFDNQK 204

Query: 171 IRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            R  + ++  +F S   E       L   FLL +G+R   +       +      I    
Sbjct: 205 ERFLSSDEQTRFISVLMEHPERPVNLLMIFLLVTGVRSGVAKSLRWSWINMEKQIITVPP 264

Query: 229 ----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                    T+ L    M +L        T+   N   ++    F   FK     A ++ 
Sbjct: 265 SIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFINPMTQLPYNDFKKSFKTALKAAQISD 324

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
               H +R    +       +   +              Y K + D +R   + + 
Sbjct: 325 SVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLREACQIAA 380


>gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC]
 gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC
 gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila
           caviae GPIC]
          Length = 312

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------------------FDYRKIT 115
           +Y K+      + ++  ++    +                               +   T
Sbjct: 10  DYLKNIKTA--SPHTLRNYCIDLNSFKSFLEKQGELSPSSPICLLTKERKETELPFSLFT 67

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R  V           +  + L++++   ++ ++   +  +P  ++  P+   E   
Sbjct: 68  KDSVRLYVLELMQENKAKRTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPS 127

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T E ++   +        G + R   E    SGLR S+        +  N   I+ + 
Sbjct: 128 PITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT 278
                  V +     + L       E   +  D Q         ++        F+    
Sbjct: 188 KGKKERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRKFQKYLR 247

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++G++   + H +R   AT   + G     + A  G  +++    YT  + +++
Sbjct: 248 QSGLSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301


>gi|4186110|emb|CAA71790.1| putative integrase [Cupriavidus necator]
          Length = 401

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 108/370 (29%), Gaps = 28/370 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59
           L P    + T  G+      Y    G  R+  L    E T   A   A       R    
Sbjct: 27  LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86

Query: 60  --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+  L  ++ +         +++  +E    + I+   G    + +T 
Sbjct: 87  PGAAKTAARKAPTVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIVPMLGRMKVQDVTR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I   ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 147 PDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 206

Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++       + +           +   LA         R S+        +      +  
Sbjct: 207 DEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 266

Query: 227 QK-----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      ++ E        L            N+  Q +   ++   +     +AG
Sbjct: 267 PDSKTGGMSKPLSEEAYRLLCTALRQDDCPHVFPSPNHPGQHLTTGEYYGGWTRILKRAG 326

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRR 338
           V +   HG+R  SAT  A++G      MA    KTV     Y    D+ +R   +  + R
Sbjct: 327 VSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVANR 386

Query: 339 ISSVVDSDDP 348
              +  +  P
Sbjct: 387 RKKITGAHRP 396


>gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1]
 gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1]
          Length = 304

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 32/288 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----------------SGDFDYRK- 113
               +  +       + +  +   +     +  R                   +      
Sbjct: 6   FSEWLDRFSSYLRMRNYSPRTIEKYLQTIRRFARYAWLRQNSDGVSFDGAAFENAPLDAD 65

Query: 114 ------ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                 + T       E + + P +  + ++++   +K+   Q  V  +P L VERP+ K
Sbjct: 66  VNVSSALVTDFFSYLSEQQDYKPKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIK 125

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + ++   K           E  + RL    +  +G+R S+ C   V+ +     +I+ +
Sbjct: 126 NQELKYL-KHSQVLRLINTIESERDRLIVRLIYATGVRVSELCAICVEDIDFEEQTIRVK 184

Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK 284
                I TV + +  ++ +           +        ++       FK  A  +G+  
Sbjct: 185 GKGDKIRTVFIDEETLEEINRFIGNTIEGPLFSGQQGNHLSPRTVQHLFKQYAP-SGI-- 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR 330
           + H +R   A+           +    G  ++   E Y      +R R
Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKR 289


>gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 316

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 33/287 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             L+ ++          + ++  ++     + +R     G      ++   +   +    
Sbjct: 5   DALVRDWVDYLRVEKGASTHTVSNYLRDASRYVRDMESRGRATLTDVSAHDVEEHLAGLA 64

Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     PSS  +   ++R L ++A+ +  + ++    +  P++ +   +  + +++
Sbjct: 65  SGQVSGRPAAPSSVARACAAIRGLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALSVDEV 124

Query: 180 QQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +            G +     E L  +G R S++       L  +      +  G    
Sbjct: 125 GRLLDAAHADDTPIGLRDAALLELLYATGARVSEAVALSADDLDLDGQVPVVRLFGKGRK 184

Query: 235 VE--------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                  +LA    G    F+N+    ++        +  A  A
Sbjct: 185 ERIVPVGSFAIEALDAYRVRARPVLAARGSGSTALFLNSRGSALSRQSAWTAIRRAAQAA 244

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +    S H +R   AT   + GA+  E+    G  +V   + YT+ 
Sbjct: 245 NLAHRVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRV 291


>gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF]
 gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6]
 gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 382

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 119/365 (32%), Gaps = 48/365 (13%)

Query: 13  KERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + + ++G+ ++ F+         G+++R       T   A   ALT    + E     + 
Sbjct: 6   QYKKKNGEKLWKFQTYLGVDPLTGKQVRTTRRGFKTKKEA-QLALTKLQLEYENNGLNKT 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  T + +   +  +        +   + E + + I+   G +   KIT    +     +
Sbjct: 65  KELTFQEVYDLWIVNYEQTVKESSFVKTKEQFANHILPAFGAYKINKITIDIAQKFANEK 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                   +F+ +   +  +A++  Y+  NP   +  PKRK       T     + +   
Sbjct: 125 VKKFVLYREFINNASRICDYAIKLGYLQDNPLKKITVPKRKVSVHEEDTLNFFSKEELEI 184

Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                      +    F  L ++G+R  +      + +  N   IK  KT          
Sbjct: 185 FLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKDIDFNDNYIKINKTLARGKNRRLY 244

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269
                       + + D  M +L    + +  + +      ++  Q              
Sbjct: 245 VEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLS 304

Query: 270 --SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
               W +    +  + + + HG+R   A++  +AGA   ++    G  ++      Y   
Sbjct: 305 KPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHI 364

Query: 326 ADRIR 330
            D+ +
Sbjct: 365 TDKRK 369


>gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
 gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 385

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 121/382 (31%), Gaps = 51/382 (13%)

Query: 11  VTKERTRHGKIIY----YF--RKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63
           + +  T  GK  Y    Y    +  G  I++      +   A  + L       +     
Sbjct: 5   IKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIP 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
             K   T   L   + K     ++  ++  +   YF+  I+++ G     K+T    +  
Sbjct: 65  ESKGHITFNKLYEMWLKLYR-ETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKA 123

Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           V       P +  +F+     +  + +    +     ++   P +     +P+T    + 
Sbjct: 124 VNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNEPKPFTDFYSKD 183

Query: 182 FKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNI--------------- 221
             + +   ++      F+      YSG+R  ++       +                   
Sbjct: 184 ELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNN 243

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269
             +    +   +  T+++    M+ L    + ++   +      +N              
Sbjct: 244 ELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYL 303

Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                  W  A   K  + +   HG R   A++  +AGA+ +E+ A  G   ++     Y
Sbjct: 304 SMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIY 363

Query: 323 TKGADRIRLGIKNSRRISSVVD 344
           T   D  +     + ++  +V+
Sbjct: 364 THVTDDQK--KDTANKLVRLVE 383


>gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440]
 gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC
 gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440]
          Length = 299

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +  Y         ++ ++   +    +++     + G  D++ +  + +R  +    H  
Sbjct: 5   LEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHG 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +P S  + L+++R L+++  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     + HL           K G    + +     
Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++     +  K    +  G +   H +R   A
Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083]
 gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083]
          Length = 295

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 78/267 (29%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L +   +      ++  ++ +            G       T   +R+          S 
Sbjct: 9   LRTRMIEDMRIRGMSPKTQQTHIRAVRYFSEFIGRSP-DTATPDELRAYQLHMTDAGVST 67

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189
                 + S+R  F     +E +        +      +     + E++    +     G
Sbjct: 68  GVFNARIVSLRFFFGMTCGREEMKRFMQFRRKA----KKLPVVLSVEEVGDLLAAVPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + R A      +GLR S+ C   +  + ++     +   K        L  G + LL  
Sbjct: 124 LKYRAALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRD 183

Query: 248 TPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                         +      +  Q +  F +    AG+NK  + H +R   AT   +AG
Sbjct: 184 YWREARPEGWLFPGKPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEAG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G   +     YT  A +
Sbjct: 244 TDVRVIQVLLGHSKLSTTARYTHVATK 270


>gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
 gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica
           DFL-43]
          Length = 316

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 76/277 (27%), Gaps = 29/277 (10%)

Query: 76  SEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESR 126
             +         LA  +  ++E    Q +              D   +    +R+ +  R
Sbjct: 22  QRWLAQLTEERRLADKTAEAYERDLRQFLGFLTLHLGGPPKISDLADLRPLDLRAFMAER 81

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   + A      L  +R   +   R+         +   PK+     +P +  D ++  
Sbjct: 82  RREGAGARTLGRGLAGIRSFLRHLERKGLANAAGATATRAPKQPKSLPKPLSARDARRVV 141

Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
                        ++       L   GLR S++       +  +  S++    G      
Sbjct: 142 DADLQLSDEPWIAARDAAVLTLLYGCGLRISEALGLTRNDIPRDGESLRITGKGGKTRIV 201

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
               I       +++L    P      F       +         +A  +   +    + 
Sbjct: 202 PLLPIARSAISDYLELSPFRPAADAPMFRGARGCPLQPAIVQKAMRALRSALDLPETATP 261

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT     G     +    G  ++   + YT
Sbjct: 262 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 298


>gi|27817681|emb|CAD61108.1| putative site specific recombinase [Cupriavidus oxalaticus]
          Length = 402

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 108/370 (29%), Gaps = 28/370 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59
           L P    + T  G+      Y    G  R+  L    E T   A   A       R    
Sbjct: 28  LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 87

Query: 60  --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+  L  ++ +         +++  +E    + I+   G    + +T 
Sbjct: 88  PGAAKTAARKAPTVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIVPMLGRMKVQDVTR 147

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             I   ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 148 PDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 207

Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++       + +           +   LA         R S+        +      +  
Sbjct: 208 DEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 267

Query: 227 QK-----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      ++ E        L            N+  Q +   ++   +     +AG
Sbjct: 268 PDSKTGGMSKPLSEEAYRLLCTALRQDDCPHVFPSPNHPGQHLTTGEYYGGWTRILKRAG 327

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRR 338
           V +   HG+R  SAT  A++G      MA    KTV     Y    D+ +R   +  + R
Sbjct: 328 VSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVANR 387

Query: 339 ISSVVDSDDP 348
              +  +  P
Sbjct: 388 RKKITGAHRP 397


>gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445]
 gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445]
          Length = 315

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 75  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 133 DDARRLVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 304


>gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 373

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 94/317 (29%), Gaps = 19/317 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPTTLKWLISEYRKSA 82
           +R G  +              AY + +     K         R +    +  +  Y    
Sbjct: 34  YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139
             G  + +    +  +   I    GD    +I   HI      +  +  +P +    +  
Sbjct: 94  AKGKSSESHMRGYFEH--HIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIAL 151

Query: 140 MRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFE 197
           +R +++  V    Y   +P   VE PK     +R  T+ +           S+       
Sbjct: 152 VRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQWHDIAY 211

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
             LY+G+R  +     V H+                    +  G  ++LA    G++   
Sbjct: 212 LSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYMTAGVKEILAARCAGRDAKE 271

Query: 257 INNDKQKMNA-TQFSIWFKAKATK--------AGVNKSAHGVRKFSATISADAGATAHEL 307
               ++        S  F   A +        A      H +R    +  A  G   + +
Sbjct: 272 FVFVQRGGGRVRYISSVFSRVADELFNDGVTDARHKVVFHTLRHTFGSWLAQRGVPLYTI 331

Query: 308 MATYGWKTVDQAETYTK 324
               G  +++  + Y+K
Sbjct: 332 AVLMGHSSLEMTKRYSK 348


>gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
 gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum
           SK141]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 93/312 (29%), Gaps = 31/312 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYR 112
           +        K    +   I ++     H    A  +   + S    +        +FD  
Sbjct: 3   EDGKSAKTPKVEGQMAEAIEDFADFQLHVKGRAEATVRGYRSDLRDLARSVPTFAEFDLN 62

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +      +  E +  + S+  +   + +    WAVR+ ++  +    +  PK       
Sbjct: 63  SLRQWLAEAVAEGK--SRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPT 120

Query: 173 PWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKT 226
               E   +              +     E L  SG+R ++  R  +  +     +   T
Sbjct: 121 VLAPEQAGELMGNAVSADEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVT 180

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKA 277
            K      V         L                E  F+ +   +++  Q     +  A
Sbjct: 181 GKGNKQRVVPFGHAAEDALKQWIDKGRGEIAAAGTEAVFVGSRGGRIDQRQVRRIVEKAA 240

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              G    + HGVR  +AT   + GA    +    G  +++  + YT  +         +
Sbjct: 241 KVTGTQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVS---------A 291

Query: 337 RRISSVVDSDDP 348
           +R+  V D   P
Sbjct: 292 QRLQRVYDQAHP 303


>gi|251773381|gb|EES53930.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 344

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 111/334 (33%), Gaps = 30/334 (8%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           T+ G + +  + +  G  ++    +       +   + G   +  +++    + TT+   
Sbjct: 5   TKRGDLQWQVKIRRKGFTLQSRTFNSKAESETWARLVEGEMDRGVFVDRSESEKTTVAEA 64

Query: 75  ISEYRKSAHW--GSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129
              Y +         A    +IS+           G      I    + +  +   + H+
Sbjct: 65  FDRYEREVAVLKKGYAQEKYKISYWR-----KSSFGQRYIANIRPTDLAAWRDEYLKTHS 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           PS+  + L  +  LF  A+++  +    NP   + +P+      R     +     S   
Sbjct: 120 PSTVNRLLIVLSHLFTIAIKEWGMGNLVNPVQQIRKPRFPRGRDRRLLPGEENVLLSACK 179

Query: 188 E-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
             G    L   F L +G+R S+      Q +     ++     K G    V L    +++
Sbjct: 180 AYGGDLSLLVRFALETGMRRSEIAGMTWQMVDLKKRTVTLLVTKNGDKRIVPLSPEAVRI 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAK------ATKAG--------VNKSAHGVR 290
           L+  P   +          +      +  +A+        K G        ++ + H +R
Sbjct: 240 LSTLPRRLDDQVWEGKPGSITQAFMRVVTRARGAYEKECEKKGAKPDPTFLLDLTFHDLR 299

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +   + G    ++ A  G KT+   + YT 
Sbjct: 300 HEATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 333


>gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
 gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 49/303 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123
           Y ++      + N+   +E       R                 + D R I    +R   
Sbjct: 151 YLETI--KGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEFSEIDIRDIDNSFVRKIK 208

Query: 124 ------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
                       + R++   +  + + +++  FK+   + + +  NP L +E PK     
Sbjct: 209 LTDLYAFLSFAEKQRENGSYARARKVAALKSYFKFLNGKAKIIDDNPTLELESPKINKRH 268

Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               + ++     S   + +    +        L  G+R S+ C   +  ++ +  +I  
Sbjct: 269 PVYLSLDESVNLLSSLDKDNKNYYRDYCILTLFLNCGMRLSELCSIKLDKIKGDTLTIIG 328

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAK 276
           +      TV L +  +K +      ++T                 + +N     +  K  
Sbjct: 329 KGD-KERTVYLNEACLKAIDNYLAVRDTSKCTPEDKEYLLLSSRYKPINKRTVELLVKKH 387

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRL 331
              +G+     + H +R  +AT+    G      L +  G + +   + YT   +  +R 
Sbjct: 388 IFNSGLSNEKYTPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRD 447

Query: 332 GIK 334
            + 
Sbjct: 448 AVN 450


>gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
 gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597]
          Length = 310

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSG 122
           +  ++++          +  +  ++            + +    G     ++TT  +R+ 
Sbjct: 10  RDALADWLSGMKSLRGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAW 69

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +       S  + L++++  ++W   +E + + P LS   P+ +    RP  ++  
Sbjct: 70  MARERGAGLGARSLARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAA 129

Query: 180 QQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +          +     ++       L   GLR S++    V  L          K G  
Sbjct: 130 RAMIETVGSSDTRPWVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDSLRIRGKGGKE 189

Query: 233 IT-------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                     +  + +++++          F       ++A       +      G+  +
Sbjct: 190 RIVPLIAPARQAVEAYLEIMPHPVTSGAPLFRAIRGGALSARTVQKSMERARMGLGLPAT 249

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT    AG     +    G  ++   + YT G D  RL 
Sbjct: 250 ATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYT-GVDTARLM 297


>gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640]
 gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 29/291 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
                  Y ++      + ++  ++    ++++ +      G    + ++ +   + +  
Sbjct: 6   FAAHFDAYLENIVREGKSEHTVAAYRRDLEELLAQMPSEAEGGVP-QDLSRRDFTAALRR 64

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +  + L+S R    W V++  +  +P   +  PK+     +   +E + + 
Sbjct: 65  LSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLNRM 124

Query: 183 KSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236
                +G      +    FE +  SGLR S+        +  +  +   T K      V 
Sbjct: 125 LDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQVP 184

Query: 237 LPDGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHG 288
           L     + L      ++T          +           K  A  A     G + S H 
Sbjct: 185 LTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSPHM 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +R   A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 245 MRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 289


>gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 105/393 (26%), Gaps = 73/393 (18%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF      G+R R+     +T   A    +      +           ++ 
Sbjct: 7   RKRGKKWEYYFEIAKMDGKRKRISKGGFNTKAEAVSEGVKAMHEYQTAGTVNTPSELSMH 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + +     +L   +  +++ Y    I  K G +    IT + ++  +        
Sbjct: 67  DYLNYWIEMYCIPNLKPTTVANYKKYIRLHISPKIGKYRLATITAEQLQKLINDMVANGY 126

Query: 132 SAIQFL---TSMRVLFKW-AVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQ 180
           S    +     +     +      Y+  +P   V+ PK                 K+ + 
Sbjct: 127 SKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRTNYRSSQYKREVIEKDIID 186

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIFS 223
           +    + +GS   L   F  + G+R  ++      ++                     + 
Sbjct: 187 EIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFTDRTVTINKQLQWDLEKKFWY 246

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259
           +   K  +  T+++ +  ++LL      +                               
Sbjct: 247 LTPPKYNSSRTIDIDETIVELLKEMQEKQIRAKEYYADEYSLIYYDEELGINESTGNVID 306

Query: 260 ---------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                      Q       S              + H +R    T   +AG     +   
Sbjct: 307 FVNVYENGGFIQPRTIQHTSQVIHKFYPA----FTFHSLRHTHCTRLLEAGLPIKYVQER 362

Query: 311 YGWKTVDQAE-TYTK----GADRIRLGIKNSRR 338
            G K +      Y       A+  +  +++  +
Sbjct: 363 LGHKNISVTMDIYNHLTQSQAELSKRALEDVFK 395


>gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040]
          Length = 317

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 97/293 (33%), Gaps = 34/293 (11%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126
             IS +  +       A N+ +++      +          + ++    I +     ++ 
Sbjct: 9   QWISTFLDAQAAELGAARNTLLAYGRDLRNVTTWMRTKGQSFAQMQQADIEAYLISCDAE 68

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + L++++ ++++A  + +   NP L ++ P R     +   + ++ +  +  
Sbjct: 69  GLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAEVDRLLAAA 128

Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
            E         +     E L  +G+R S+     V   + +   +    K G    V L 
Sbjct: 129 REVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGKERMVPLS 188

Query: 239 DGFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 L    +                 +  F   + +  +   +F +  K  A   GV
Sbjct: 189 PPARAALGAWIVLRDSLEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGV 248

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                + H +R   AT     GA    + A  G   +   E YT   D  RL 
Sbjct: 249 SPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300


>gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 372

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 95/351 (27%), Gaps = 35/351 (9%)

Query: 15  RTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++ +GK      +Y   G  R               +  ++      ++  ++   K  +
Sbjct: 6   KSSNGKWRVRISWYDSTGTRRFKSKAGFSTKAEASRWARSM----EIKKDDSTITDKSVS 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
                 E+ ++     ++  +   +     ++    G     +IT +  +  +      H
Sbjct: 62  FAQYFDEWFRTYKENKISYITAGKYRVIQSKLAEFYGSRKIDEITRRDYQRFINEYGACH 121

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P S  +  + +R   K A+  + +  +   +VE         +       +  K     
Sbjct: 122 APESVKKTNSIIRSCVKSAILDDLITKDFTQNVELVWNSDREHKVDYLNVNEINKLAAYL 181

Query: 189 GSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            S+              + +G+R  +        +  N  +I   K    +  +      
Sbjct: 182 ESKLDPRYTSYYMIYTAIMTGMRLQEIAALTWDDINFNWKTIDINKAWDFVLKKYIPTKT 241

Query: 243 K---------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           +               +  +        F N       +   +   +    + G+NK   
Sbjct: 242 ESSTRIIRVNSKLLDIIAQLKSNHSGMVFCNASGTIPTSAGCNKTLRKSLRQLGINKPSY 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTV-DQAETYTKGADRIRLGIK 334
             H +R     +    G   + +    G   +      Y    D +R    
Sbjct: 302 HFHALRHSHVALLLYKGVDIYAISKRLGHSDLTTTTRRYAYLIDELRQKAD 352


>gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1]
 gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC
 gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1]
          Length = 299

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++ + +    +++I    +    +     I+      + +    
Sbjct: 5   LEAYCAHLRNERQVSEHTLLGYRRDLEKVIAYCKEHGIAEWQALQIQQLRQLIARLHHHG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +P S  + L+++R L+++  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     + HL           K G    + +     
Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++     +  KA   +  G +   H +R   A
Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123
             +         +  +  ++      + R +G+                ++ +    +  
Sbjct: 15  EAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSDGAVTES 74

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E    + +S  +   ++R  F WAV    V  NP  S+   +   +     T  + ++  
Sbjct: 75  ERGPRSAASVHRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R   E LL +G+R  +     +  +  +   ++ +  G +  V+  
Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287
              ++ L    + +       + +         ++   Q +        KAG+ K  + H
Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G+R   AT    A      +    G + V   + YT   D      +   R+
Sbjct: 255 GLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQ--LEEALERL 304


>gi|296444833|ref|ZP_06886796.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257781|gb|EFH04845.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 434

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 94/367 (25%), Gaps = 45/367 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-----SALTGSTPKREYINSP 64
           FV + R   G      R    RR+ +      T   A        A            + 
Sbjct: 42  FVVEYRPNGGG-----RGVAKRRVTIGKVGTLTPEQARKSAGELLARARLGADPAQEIAD 96

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R+K  T+  L   +      G L  ++R S+++   ++    G      +T   I +   
Sbjct: 97  RRKAQTVAALCDAFEVEHVDGKLKPSTRASYKAALARLKDAHGSAKAESVTRAQIATLHA 156

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174
               +P  A + L++   LF W + + +V      + E  + +      +          
Sbjct: 157 KLATSPYVANRALSTWAKLFAWGMTRSFVPKGDNPAREIDRYRESKRERFLTGDELGRLG 216

Query: 175 ---------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                                 K   +              A   L+ +G R  +   A 
Sbjct: 217 AALAEGETAGLPYAVDATKAKAKHAPKPENRLVKLDPFAVAAIRLLILTGARLREIMDAQ 276

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSI 271
              +      +    + T             +       E         K          
Sbjct: 277 WSQVDFQRGMLFLADSKTGRKPIYLGAAALAVLADLPRIEGNPHIIAGAKDGAPRADLQR 336

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
            + A    AG+     H +R   A++ A A      +    G       E Y    AD +
Sbjct: 337 PWAAVRQAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHMQAATTERYAHLDADPL 396

Query: 330 RLGIKNS 336
           R      
Sbjct: 397 RRAADTI 403


>gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 313

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 37/292 (12%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVE 124
             IS +  +       + N+ +++      +                  I    I    +
Sbjct: 9   QWISTFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTASQDDIEAYLI--SCD 66

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           ++    S+  + L++++ ++++A  + +   NP + +  P R+    +     ++ +   
Sbjct: 67  AQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLEVIEVDRLLE 126

Query: 185 FWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236
                     +  +     E L  +G+R ++     V   + +   +    K G    V 
Sbjct: 127 AARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGKERMVP 186

Query: 237 LPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           L     + LA                  P  +  F        +   +F +  K  A   
Sbjct: 187 LSPPAREALAQWLLVRDAAEDERELKGNPASRFLFPSRGKSGHLTRHRFYLLIKELAVTG 246

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G+     + H +R   AT     GA    + A  G   +   E YT   D  
Sbjct: 247 GLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDAR 298


>gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
 gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas
           elongata DSM 2581]
          Length = 352

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 26/334 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  TL+  
Sbjct: 6   KTPSGSWKAVIRKTGWP-TTAKTFRTKRDAQDWARRTEDEMVRGVYIQRSASERMTLEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----- 129
           +  Y           +++ S     + +I   G +    +T + I +  ++R ++     
Sbjct: 65  LKRYLADVTPTK-KPSTQKSERHKANTLIEHLGKYSLAALTPELIANFRDTRLNSLGRRG 123

Query: 130 -PSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            P SA      L  +  L+  A+++  +    NP  ++ +P       R  + ++ ++  
Sbjct: 124 QPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQNIRKPSPGEGRDRRLSADEEKRLF 183

Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235
           +   + S P LA+     L +G+R S+        +      ++   T         +T 
Sbjct: 184 AVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVRLTDTKNNEARLVPLTQ 243

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              + F + L       +   +   +     K     ++  +     +AG++    H +R
Sbjct: 244 AATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQAKKQAGLDDFRFHDLR 303

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +   +AG +  E+    G K++     YT 
Sbjct: 304 HEAVSRLVEAGLSDQEVATISGHKSMQMLRRYTH 337


>gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 395

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/389 (11%), Positives = 102/389 (26%), Gaps = 70/389 (17%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  YYF      G+R R+     +T   A    +      +           ++ 
Sbjct: 7   RKRGKKWEYYFEIAKMDGKRKRISKGGFNTKAEAVSEGVKAMHEYQTAGTVNTPSELSMH 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + +     +L   +  +++ Y    I  K G +    IT + ++  +        
Sbjct: 67  DYLNYWIEMYCIPNLKPTTVANYKKYIRLHISPKIGKYRLATITAEQLQKLINDMVANGY 126

Query: 132 SAIQFL---TSMRVLFKW-AVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQ 180
           S    +     +     +      Y+  +P   V+ PK                 K+ + 
Sbjct: 127 SKNTVIGIKGVLSSSLNYAVQPLHYLKTSPMAYVKIPKGSRTNYRSSQYKREVIEKDIID 186

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIFS 223
           +    + +GS   L   F  + G+R  ++      ++                     + 
Sbjct: 187 EIFVRFPKGSSTYLPLMFAYHCGMRLGEAFAITWDNVNFADRTVTINKQLQWDLEKKFWY 246

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------ 259
           +   K  +  T+++ +  ++LL      +                               
Sbjct: 247 LTPPKYNSSRTIDIDETIVELLKELQEKQIRAKEYYADEYSLIYYDEELGINESTGNVID 306

Query: 260 ---------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                      Q       S              + H +R    T   +AG     +   
Sbjct: 307 FVNVYENGGFIQPRTIQHTSQVIHKFYPA----FTFHSLRHTHCTRLLEAGLPIKYVQER 362

Query: 311 YGWKTVDQAE-TYTKGA-DRIRLGIKNSR 337
            G K +      Y     ++  L  +   
Sbjct: 363 LGHKNISVTMDIYNHLTQNQAELSKRALE 391


>gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +  Y         ++ ++   +    +++     + G  D++ +  + +R  +    H  
Sbjct: 5   LEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHG 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +P S  + L+++R L+++  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     + HL           K G    + +     
Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++     +  K    +  G +   H +R   A
Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 302

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 88/283 (31%), Gaps = 26/283 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSGV 123
           +  +         ++ ++  ++      ++  + +           D  ++ +  +R  V
Sbjct: 4   VEAFLAYLQVERQVSAHTLDAYRRDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQFV 63

Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +      SA    + L++ R  + W ++   +  +P  ++  PK   +  +    ++  
Sbjct: 64  AAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADEAV 123

Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVE 236
           +          G + R   E    SGLR S+ C    + L       +   K G    V 
Sbjct: 124 RLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLASGLVMVLGKGGKQRLVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKSAHGV 289
           +    +  L             +         ++     I  K  A + G+  +   H +
Sbjct: 184 VGSHAIAALREWQRDSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHML 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 RHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 285


>gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 300

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 86/279 (30%), Gaps = 27/279 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127
           + L  +Y +S      +  +  ++ +   +         G   + ++ T  +R  +    
Sbjct: 6   EQLYHDYLESE--RQYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLY 63

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
                 ++  + ++S+R+ +++ +  ++   NP  S+   K + +           +   
Sbjct: 64  EKKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFD 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQK 228
             +        +     EFL  +G+R ++     +  L             N        
Sbjct: 124 VAYNHEDYLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFG 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 ++     ++         E  F+N+  + +     +        ++ +      
Sbjct: 184 HFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282


>gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
 gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811]
          Length = 303

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 87/279 (31%), Gaps = 28/279 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES 125
            L   Y +S      +  +  ++ S  D+ +               + +  +   + +  
Sbjct: 7   QLYQVYIESE--RQYSPLTLKAYLSDIDEFVIFLTKNGGFINFKTVQILDVRVYLNDLYE 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQ 180
           RK   ++  + ++S+R+ +++ +  ++V  NP  +V   K +      +     T     
Sbjct: 65  RKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMTTLFDV 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
            +        +     EFL  +G R ++        L  +   +    K      V    
Sbjct: 125 AYNPEDLLWQRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGNKDRYVPFGH 184

Query: 240 GFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
              + L+              +  +  F+N+  + +     +        ++ +      
Sbjct: 185 FAAQALSQYLKETRPKLIAKQVPHDFVFVNHRGEPITTAGITYILNELMKRSTLTGKIHP 244

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 283


>gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 322

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT KH++  +         P++    +++
Sbjct: 38  QAEGFRKRTIDDYTKLFHYFMRELNIEKVEIITAKHVQMYINKLLSRELAPATINIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK    Q Y+  NP +   + +     I       +++           G +   A
Sbjct: 98  LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCA 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +     L  +  +I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKIAEELRMLIDE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                      AG++K    S H +R   AT     
Sbjct: 218 SREYFEGTTNVFLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSPHSLRHTFATNFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
 gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens NCTC 8239]
          Length = 361

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114
           Y ++    SL  N+   +        +                         GD   + I
Sbjct: 53  YLENVKGKSL--NTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 110

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           T   I + +      R ++  +  + + +++  FK+   + + +  NP + +E PK    
Sbjct: 111 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 170

Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                T +      +   +G+    +        L  G+R S+ C   ++ ++ +  +I 
Sbjct: 171 HPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 230

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275
            +      TV L +  +  +      +             F+++  + +N     I  K 
Sbjct: 231 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 289

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330
               AG      + H +R  +AT+    G      L    G + +   + YT   D  +R
Sbjct: 290 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 349

Query: 331 LGI 333
             +
Sbjct: 350 EAV 352


>gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           str. 13]
 gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 450

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114
           Y ++    SL  N+   +        +                         GD   + I
Sbjct: 142 YLENVKGKSL--NTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           T   I + +      R ++  +  + + +++  FK+   + + +  NP + +E PK    
Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259

Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                T +      +   +G+    +        L  G+R S+ C   ++ ++ +  +I 
Sbjct: 260 HPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275
            +      TV L +  +  +      +             F+++  + +N     I  K 
Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330
               AG      + H +R  +AT+    G      L    G + +   + YT   D  +R
Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438

Query: 331 LGI 333
             +
Sbjct: 439 EAV 441


>gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
 gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304]
          Length = 318

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 30/274 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLT 138
             LA  +  ++ES   + +             I+ +++   V S         S  + L 
Sbjct: 31  RGLAAATVKAYESDLIKYVSWLTHKKVTDPGQISQQNVEDFVASLSLAGESQKSIARRLA 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191
           S+    ++   +  +  +   +V+ PK         T +++ +     S          +
Sbjct: 91  SIHEYHRYLSSRGQIQTDVSQTVKPPKAAAHLPDVLTIDEVSRMMEMTSTERDTDPVILR 150

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI 250
            R   EFL  +G R S++    +  L  +    +   K      V L       L     
Sbjct: 151 DRALLEFLYATGARVSEAVGLNMTDLDLDSRCARLMGKGSKQRLVPLGSYACSALNRYLH 210

Query: 251 GKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           G   +              F+N   ++++        +A A +A ++K    H +R   A
Sbjct: 211 GPRQYLQDKARSGPELRAVFLNKRGKRLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCA 270

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T     GA    +    G  +V   + YT  + +
Sbjct: 271 THLIRGGADVRTVQELLGHASVTTTQLYTHISPQ 304


>gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 300

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 86/279 (30%), Gaps = 27/279 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127
           + L  +Y +S      +  +  ++ +   +         G   + ++ T  +R  +    
Sbjct: 6   EQLYHDYLESE--RQYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLY 63

Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
                 ++  + ++S+R+ +++ +  ++   NP  S+   K + +           +   
Sbjct: 64  EKKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFD 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------NIFSIKTQK 228
             +        +     EFL  +G+R ++     +  L             N        
Sbjct: 124 VTYNHEDHLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFG 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                 ++     ++         E  F+N+  + +     +        ++ +      
Sbjct: 184 HFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282


>gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
 gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2]
 gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M]
          Length = 316

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 26/275 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSA 133
           + +      LA N+  ++        +         +               R    +S+
Sbjct: 36  WLEH----GLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARRDGKATSS 91

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG 189
            + L+  R  + WAVR+   + +P L +   K+        ++  ++            G
Sbjct: 92  NRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLG 151

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            + R   E +  SGLR S+        +  N   ++          V   +     +   
Sbjct: 152 LRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERY 211

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                            F+      M   QF    K  A +A V  + S H +R   AT 
Sbjct: 212 LREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATH 271

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + GA    +    G   +   + YT  A R RL
Sbjct: 272 LLNHGADLRVVQLLLGHADISTTQIYTHVA-RERL 305


>gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2]
 gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2]
          Length = 268

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 97/260 (37%), Gaps = 13/260 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSA 133
             ++ K     + ++ +  ++E+   + +     + +   IT   +         +  + 
Sbjct: 9   AEKFLKFIAKTN-SLQTHRTYENVLKEALNFIELESNIIDITPYRLHIAN----LSKKTI 63

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + ++ +R  F +  ++ Y      +  E  K      +P + E++++            
Sbjct: 64  AKKVSVLRSFFDFLKQEGY--KFKIVGDEHIKVPKTLPKPISLENIKEALKV--ANMDEY 119

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIG 251
           LA   +   GLR S++    +  +  +   IK +       + L     + +        
Sbjct: 120 LAIIVIFSLGLRISEALNIKLSDIHGDWIEIKGKGN-KTRILPLHPKLKEFIQKYLKINP 178

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           K+ +    D +K +  Q     +    K G++ + H +R   AT   D GA  +++    
Sbjct: 179 KKEYLFEKDGKKYSENQLRYNIQKAFKKIGIHATPHQLRHSFATYMLDKGARINDVSELL 238

Query: 312 GWKTVDQAETYTKGADRIRL 331
           G + +   + YTK ++ ++L
Sbjct: 239 GHEFISTTQIYTKLSNSLKL 258


>gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999]
          Length = 304

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127
              +  + +        +++++ ++ ++            +  +T + ++  V   +   
Sbjct: 13  DKWVQAFAEQLKVERQYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLSKKAG 72

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L+++R    + V Q  +  NP  +V  PK      +    E ++   +F  
Sbjct: 73  LSARSIALRLSALRQFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLLNFTP 132

Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           E    ++ +  FE +   GLR S+     +  + ++       K G    + + +   + 
Sbjct: 133 ESVHEARDKAMFELVYGCGLRLSEVTGLNLLDVLDDHILNVNGKGGKQRRLPIGEHAWRA 192

Query: 245 LAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           +    + +  F  +               ++   Q +      ATK G++   S H +R 
Sbjct: 193 VQDWLLWRVQFITSAAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGIDTHISPHKLRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++      +    G   +   + YT   D   L 
Sbjct: 253 SFATHVLESSGDLRAVQELLGHANLATTQVYTH-LDFQHLA 292


>gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 369

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPNPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  EDYLNHWLE-IKSMSIERSTFVGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F     
Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                     +    N     +    F   F      
Sbjct: 244 TIPVPKETIECLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AGV     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 AGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
 gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo]
 gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A]
          Length = 317

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 17  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 76

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 77  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 134

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 135 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 194

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 195 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 254

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 255 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 306


>gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
 gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM]
 gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796]
          Length = 302

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 104/276 (37%), Gaps = 26/276 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIR---SGVESR 126
           L   Y ++      +  +  S+++     ++ ++++G ++ ++ IT + I+     +  R
Sbjct: 10  LFISYLQNE--RHYSSKTIASYKTDLLEVEKFLKENGGYNGWKNITERDIQLYLQHLSDR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
           K   SS ++ ++S+   +++  R++ V ++P   +   + + +    + + +++Q     
Sbjct: 68  KLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFDSL 127

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                   +    F+    +G+R S+     +  +   + +I    K      V   D  
Sbjct: 128 SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRYVAFDDKT 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            + L                +   F++N  + ++        +    +AG+      H +
Sbjct: 188 KRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G  ++   + YT  
Sbjct: 248 RHTFATAMINNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
 gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212]
          Length = 297

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 90/274 (32%), Gaps = 19/274 (6%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
            Y     +   L+  +  S+      ++   G  D  ++ + +IR  +           S
Sbjct: 11  AYIDHLAYERRLSPLTCKSYARDIRVLLEHLGTDDLAQVQSPNIRQAIAQLHGKGLGGRS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189
             + L++    + + +R+     NPC +V  PK   +     + ++  +   F  E    
Sbjct: 71  LARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQFPVENILL 130

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------TQKTGTIITVELPDG 240
           ++    FE    SGLR ++      + +     +I+             G      +   
Sbjct: 131 ARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGKARIVPVGEYALHSITTW 190

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
               L +        F++     ++    +   K++A + G+++    H +R   A+   
Sbjct: 191 LALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRARQQGLHQNVHPHVLRHSFASHVL 250

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +      +    G   +   + YT   D   L 
Sbjct: 251 QSSGDLRAVQEMLGHAHITSTQVYTH-LDFQHLA 283


>gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1]
 gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
 gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1]
 gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293]
 gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676]
          Length = 322

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT  H++  +    +    P++    +++
Sbjct: 38  RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK    Q Y+  NP +   + +     I       +++           G +   A
Sbjct: 98  LKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCA 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +     +  +  +I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                    T AG+ K    S H +R   AT     
Sbjct: 218 SREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 384

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 106/340 (31%), Gaps = 40/340 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + +       G+R +  +  +   I     AL           + R+    L   + ++ 
Sbjct: 22  RWVAEVTIATGKRKKFYFKTKQEAIKKKNEALRELEMGILATGTRRR----LGEYLEDWL 77

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQF 136
           ++ H G L V + ++++     +I   GD   +K+T +H+++    + +   S       
Sbjct: 78  ENVHKGRLRVGTYVNYKKLIKYVIADLGDIWLQKLTPQHVQTFYSKKLNEGLSSKLINNI 137

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              + V  + AVR      N C  V  P+  +  + P + E  + F     +  +  +  
Sbjct: 138 HGVLHVALENAVRWGLAPKNVCDLVTPPRIVSREVVPLSVEQARWFVDRVKKH-RLEVLL 196

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPD 239
              + +G+R  +        +                  +     + +       + LP 
Sbjct: 197 VTAVVTGMRRGELLALRWPDIDFERSRLLVLHSVDFIAGHGYVEGQPKTVAGRRVISLPS 256

Query: 240 GFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATKAGV-NKS 285
             + +L      ++    +    +              +       F+    +AG+    
Sbjct: 257 FLVDMLKQHRTLQQDARKSAKDWQDRDLVFPNLKGGYLHPAHMGEKFRKILAEAGLPPIH 316

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            H +R  +A+I    G     +    G   +      Y+ 
Sbjct: 317 FHDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSH 356


>gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 367

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 104/337 (30%), Gaps = 21/337 (6%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M         + +     G      R   G+RIR     ++     Y    T +   R  
Sbjct: 1   MARKGGKDRGIREIPPGSGVWWVDLRH-EGKRIRRKVGPKTAAKAVYERLKTEAREGRLV 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               ++   T++ +++E          +    ++ + Y    I K G+     +T   +R
Sbjct: 60  PREKKRIFPTVREVVTE-----RASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLR 114

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +SR  +P +   F   +R     A+R   +  +P             +R  T+
Sbjct: 115 KILNEARDSRDLSPQTINHFFGHLRAALNEALRDGKIDHSPMQGFSLLPTPRGRLRFLTE 174

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIIT 234
            +  + +   +          F + +GLR  +        +       +I   K G    
Sbjct: 175 GEELRLREVMTPA--DFRLVRFAILTGLRREEQFSLTWSDIDLQNRVLTIPRSKHGGTRH 232

Query: 235 VELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKA----KATKAGVNKS-AH 287
           V L D  +++L      +     +    +          +++        KAG+     H
Sbjct: 233 VPLSDEAVEILKAIRTERRVVSAWCFPSQNPATHIDPQNFYRRVYLPALEKAGIKDVIWH 292

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A+    AG     +    G KT+     Y+ 
Sbjct: 293 TLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSH 329


>gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 312

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 97/308 (31%), Gaps = 27/308 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYR 112
             + +++    P     L+++Y +       L+ +S  ++      +I      G  D  
Sbjct: 2   APDDVSADPSVPEDFAALLADYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLS 61

Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +  + +RS +          S+  +  T+ RV   WA R   +A +P   +  PK    
Sbjct: 62  ALDIRGLRSWLAKQQSLGKARSTMARRATAARVFTAWAQRTGRIATDPGALLASPKAHKT 121

Query: 170 GI--------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                     R                G +     E L  +G+R  + C   V  +  + 
Sbjct: 122 LPGVLGQADTRAVLDAAAVAADDGSPVGLRDLTIMELLYATGIRVGELCALDVDEVDRSR 181

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSI 271
             ++         +V       + L      +     +             +++      
Sbjct: 182 RVVRVFGKGRKERSVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRR 241

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
              A+       + S HG+R  +AT   + GA    +    G  ++   + YT   ++R+
Sbjct: 242 VVHARIGAVEAPDLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERL 301

Query: 330 RLGIKNSR 337
           R   + + 
Sbjct: 302 RSAYEQAH 309


>gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 309

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 81/296 (27%), Gaps = 32/296 (10%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTK 117
              T    +  + +       L+  +  ++       +                  +T  
Sbjct: 4   VELTAADALLAWLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAA 63

Query: 118 HIRSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +R+ +  R+         S  Q L+++R    +  R+          V  P+ K    R
Sbjct: 64  EVRAHMAERRSGDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPR 123

Query: 173 PWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           P T++              +   E ++ R     L   GLR S+                
Sbjct: 124 PVTEDQARGLLAEPNADPDAEPWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGETLR 183

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKA 277
              K      V +       +      +          F       ++        +   
Sbjct: 184 VLGKGSKTRIVPVLPAVRAAVDAYLALQPFPLQPSDALFRARRGGPLSPRHVQASVQRLR 243

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + G+ +  + H +R   AT    AGA    +    G  ++   + YT G D  RL
Sbjct: 244 GRLGLPERTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-GVDAERL 298


>gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1]
 gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1]
          Length = 308

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 34/283 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSS 132
           +  Y          A N+  S+    ++  +   D +   I     +   +         
Sbjct: 7   VDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRELTDIDRIREQDVSDFVIALRSGD 66

Query: 133 AIQFL------------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             + L             ++R   ++A  +   A++    V  P       +     ++ 
Sbjct: 67  PNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSLPVNEVL 126

Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
                             + R   E L  +G R S++    V  +     S+    K G 
Sbjct: 127 ALLEAVGGSGPADGPRAVRDRALLELLYSTGARISEAVGLDVDDVDTETRSVLLRGKGGK 186

Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282
              V +    ++ L    I              F+N    +++        +A A  AG+
Sbjct: 187 QRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQAAADAAGI 246

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +   S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 247 SSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 289


>gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti
           1021]
 gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 330

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126
             +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R
Sbjct: 36  RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 95

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   + A      L  +R   ++  R          +V  PK+     +  T  +  +  
Sbjct: 96  RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 155

Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
           +            ++       L   GLR +++           + S++    G     V
Sbjct: 156 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIV 215

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286
            +     + +              +     A              +      G+    + 
Sbjct: 216 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 275

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 276 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319


>gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33]
          Length = 309

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 9   LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 68

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 69  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 126

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 127 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 186

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 187 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 246

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 247 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 298


>gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 376

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%)

Query: 35  LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +     AY   SAL  + PK+    SP   P         Y ++      + ++ 
Sbjct: 61  LSGFFDRHVETAYINYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTV 112

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ +YF +  +     + R I  + I + +    ++R  +       + S++  F    
Sbjct: 113 RAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 168

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +       C  V+R KR+       +KE+++          +    F  L  +GLR S+
Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263
                   +  +     ++  K        L    ++ L         +E  F     + 
Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  S   K  A +AG+ K    H +R   AT   + G     +    G   +   E 
Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348

Query: 322 YTKGAD 327
           Y   AD
Sbjct: 349 YVHIAD 354


>gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
 gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269]
          Length = 293

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT 129
           I E+     +  + +  +  +++                  +  + +  IR  +ES    
Sbjct: 3   IEEFLDYLRYERNRSAQTVKNYDEDLKAFESYFKKINKELSWESVDSDVIRGWMESMMDK 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181
               +S  + L+++R L+++A+ + YV  +P   V  PKR     +   + +M       
Sbjct: 63  GNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKEREMDELLGLT 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
                 +  +          +G+R S+        +   N     + K      +   D 
Sbjct: 123 VWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGKRNKQRLIPFGDE 182

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
               L M    +           F+ ++ ++MN  Q     K   +K      K+ H +R
Sbjct: 183 LDTSLRMYLELRNESVGRKSDALFVTSEGKRMNQDQVRYEVKKNLSKVCTLKKKTPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G  +V   E YT  
Sbjct: 243 HTFATAMLNHDANIESVRKLLGHASVGTTEVYTHT 277


>gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773]
          Length = 302

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 86/280 (30%), Gaps = 28/280 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVE 124
             L  +Y ++      +  +  ++ +  +       +          + +  +   + + 
Sbjct: 6   AQLYQDYLQAE--RQYSDLTVKAYLTDIEAFTTFLAENGGFTTYRAVQTLDVRVYLNELY 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDM 179
            R+   ++  + ++S+R+ F++ +  ++V+ NP  +V   K ++           T    
Sbjct: 64  ERQLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELTTLFE 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQ 227
             +        +     EFL  +G R ++     +  L                  +   
Sbjct: 124 VAYAEDEPLWQRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGNKDRYVPFG 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                   +        L       +  F+N+  + + A   +        K+ +  +  
Sbjct: 184 HFAAQAMTQYLHELRPQLVAKQAPHDRVFVNHRGEPITAAGITYILNELMKKSALTGTIH 243

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + YT  
Sbjct: 244 PHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHV 283


>gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
 gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei
           F0204]
          Length = 308

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 99/296 (33%), Gaps = 24/296 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRK- 127
              I  +         +  +  S+ +   Q    + + G  + +KI  + I   + ++  
Sbjct: 5   DAFIEYFTNIKINEGKSKRTVSSYTNDLKQYMQFLDEQGITNTKKIKPELIEEFIANQSE 64

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  +   ++R   ++     +   +P L+++  K         T +++++    +
Sbjct: 65  YKASTSLARMTAAIRSFHQFMT-MMHDEPDPSLNLQVHKGPKTLPIYCTVDEIKRLMQSF 123

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
            +     +      E +   GLR S+ C   +  +  +   I+   K      V +P G 
Sbjct: 124 DDTNIQDNLDHTLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKERIVPIPKGS 183

Query: 242 MKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + LL                  FF+N   +K+ +    +  + K  +    K  + H +R
Sbjct: 184 IPLLKQYISITRVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKKHITPHKLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AT     GA    +    G   +   E YT    + +       + + +   +
Sbjct: 244 HSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHV--QNKQLFDAYNKFNPLASQN 297


>gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis]
 gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis]
          Length = 282

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 79/271 (29%), Gaps = 20/271 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR- 126
             I  + K       +  + I++    +   +   D     F   KITT  +R       
Sbjct: 4   DAIERFIKYLESTEKSPATLINYRRDLNAFAKWFEDNNGDAFLPAKITTTDLRQYKSMLI 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P +  + + S+R    W      +     L  +  K          K        
Sbjct: 64  DHPFKPKTINRRIGSLRSFINWLWDIGEINNKFPL-PKLVKENQPTPMWLDKNQQHALMR 122

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGV--------QHLQNNIFSIKTQKTGTIIT 234
                   R A    ++  +G+R  +              + +     S   +     + 
Sbjct: 123 HLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTLSDKKGIIMIRHSKANKYREIPLN 182

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
            +    F+KL   T  G + + +   +  +      +  K +     ++  S H +R   
Sbjct: 183 KDARYAFVKLGFKTHAGSDEYVLQGQRGNITTRGIQMMIKRRVAYTDLDYLSPHMLRHTF 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
                +AG +  ++    G +T++  + Y  
Sbjct: 243 CKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273


>gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
 gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11]
          Length = 318

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 94/300 (31%), Gaps = 34/300 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG 122
             P T    IS + ++       A N+ +++                 + +     I   
Sbjct: 2   AAPATQDLWISTFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRKSGFAEADRDQIEGY 61

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +++  + ++  + L++++ L+++A  + +   NP + ++ P R     +     ++
Sbjct: 62  LIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPEV 121

Query: 180 QQFKSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231
            +         +            E L  +G+R ++     V   + +   +    K G 
Sbjct: 122 DRLLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181

Query: 232 IITVELPDGFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKA 275
              V L       LA     ++                 F        +   +F +  K 
Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGYLTRHRFFLLVKE 241

Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A + GV     + H +R   AT     GA    +    G   V   E YT   D  RL 
Sbjct: 242 LAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLD-ERLA 300


>gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 325

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 91/307 (29%), Gaps = 39/307 (12%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------GDFD------YRKITTKH 118
            +I  + +      S + ++  ++ +     +          G          + I    
Sbjct: 19  AVIDAFERHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIRLAD 78

Query: 119 IRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R+ +    +     SS  +   S+R  F WA RQ +V ++P L +  PKR         
Sbjct: 79  LRAWLGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLA 138

Query: 176 KEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           K+D                    + R   E L  +G+R  +     +  +  +   ++  
Sbjct: 139 KDDAAGLLDVAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVI 198

Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAK 276
                   V         LA                   F+    ++++  Q        
Sbjct: 199 GKGDKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDM 258

Query: 277 ATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            T      +   HG+R  +AT   + GA    +    G  ++   + YT      RL   
Sbjct: 259 LTHVPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTH-VSIERLAAS 317

Query: 335 NSRRISS 341
            ++    
Sbjct: 318 YAQAHPR 324


>gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
 gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725]
          Length = 294

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH- 128
           I ++   A +  + ++N+  S +    Q+     +     D  KIT   +R  +   +  
Sbjct: 8   IKDFLYFAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEDISKITPVMLRGFIIELQKN 67

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 68  EVGKRSINRKLSSLRSFFKYLIKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLREVI 127

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +     G + RL  E L  SG+  ++    G Q    +  ++      T  TV       
Sbjct: 128 NIDNTNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSNGKTNRTVFFSQRTR 187

Query: 243 KLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +        K+  +                +++           A KAG+ +  S +  R
Sbjct: 188 EYFKRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G   + L    G  T++  + Y
Sbjct: 248 HTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279


>gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 311

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           +  IS + ++       A N+R+++           G      +T      +   +  E+
Sbjct: 7   ERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L+S+R L+++A  + + A NP + +  P R     +    E++      
Sbjct: 67  QGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEA 126

Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +  +        R   E L  +G+R S+     V   + +   I    K G    V L
Sbjct: 127 ARDKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPL 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281
                + LA     ++       K                  +    F +  K  A  AG
Sbjct: 187 SPPACEALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           V+    + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC
           51172]
          Length = 329

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 52/306 (16%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--------------GDFDYRKIT--- 115
           L+++Y         L+ ++   +    +  I                  DFDY+KI    
Sbjct: 9   LLTDYLNYLKSIKGLSESTIKEYAYDLETFIEYQIVRKIYNNNKKDYENDFDYKKINFFV 68

Query: 116 -------------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161
                           +      +  + ++  + +++++  +K+     E +  N    +
Sbjct: 69  DNIFFEKITIQDFYAFLSYLDNDKNDSATTRSRKISAIKSFYKYMYSEIEVINTNIADKL 128

Query: 162 ERPKRKTEGIRPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             PK         T        +    +      ++        L +G+R S+     + 
Sbjct: 129 TNPKISQRQPVYLTLSETERLIETISKEKNTFLKARDLAIVFTFLTTGMRLSELISIDLS 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266
            +  + F+I  +      TV L      L+    + +  +         FI+  K +++ 
Sbjct: 189 DVNKDSFNIIGKGN-KERTVYLTKNCQDLINNYIVIRSEYLKDDTVNALFISTRKNRISN 247

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                  +    KAG +    S H +R  +AT+    G      L    G  +V   + Y
Sbjct: 248 RAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIY 307

Query: 323 TKGADR 328
           T   + 
Sbjct: 308 THLDNE 313


>gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii
           HTCC2633]
          Length = 313

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 84/293 (28%), Gaps = 28/293 (9%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSG 122
              +S +         L+  +  +++     +     G             +++   R+ 
Sbjct: 13  DKALSAFLSHLEGERRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAW 72

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  R+     P +  + L++ R  F +  R+  +       VE PK +    RP ++   
Sbjct: 73  LADRRRDGVGPRTLQRGLSAARTFFSYGRRRWGLDNPALGLVESPKAQRRQPRPVSESAA 132

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +               G++       L   GLR S++     +            K G  
Sbjct: 133 KSLLKEAETGAKEPWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPEVLRVAGKGGKT 192

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285
             V +     + ++            ++          + A       +   ++ G+  +
Sbjct: 193 RIVPVLPAVRQAVSAYVDACPYQIERDEPLFRASRGGPLQARAMQSAMQTMRSRLGLPAT 252

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              H +R   AT     G     +    G  ++   + Y        + I  +
Sbjct: 253 ATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAA 305


>gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
 gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411]
 gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734]
          Length = 301

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 83/279 (29%), Gaps = 19/279 (6%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKHTPS 131
            + +Y +        + N+  ++    D  +      +   +   + +         + +
Sbjct: 15  ALDDYEQHLRHVVGRSENTIRAYRQNLDSALEGLERIEEFDLDRARDVLGWAVDNGASRA 74

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------- 184
           S  +  +SMR    +   + +V  NP  +++ PK +    R    +      +       
Sbjct: 75  SLSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGD 134

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  +     E L  +G+R S+     V  +  +   ++          V      +
Sbjct: 135 AATPSAIRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTVV 194

Query: 243 KLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
             L      +E         F+    ++++  Q             G   S HG+R  +A
Sbjct: 195 AALEKWLEVREDMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGPRLSPHGLRHSAA 254

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           T   + GA    +    G   +   + YT         +
Sbjct: 255 TAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAV 293


>gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 329

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 34  LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 93

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+S R    W V++  +  +P   ++ PK+     +   +E + +   
Sbjct: 94  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 153

Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
              +G      +    FE +  SGLR S+        +  +  +     K      V L 
Sbjct: 154 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 213

Query: 239 DGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVR 290
              ++ L      ++T          +           K  A  A     G + S H +R
Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 274 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 316


>gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  + +       ++ ++   +     +I+    K+G  D+  + T+ +R+ V       
Sbjct: 5   LDAFLEHLRSERQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R L+++ +R+     +P   +  PK   +  R    +   Q      
Sbjct: 65  QSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFM 242
           E      + +   E    SGLR S+     ++ L      ++ +  G     + +     
Sbjct: 125 EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVRELPVGKAAR 184

Query: 243 KLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L      +          FI    +++      +  +     + G     H +R   A
Sbjct: 185 QALEAWLPLRTQAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQRLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 245 SHLLESSGDLRAVQELLGHADIATTQIYTH-LDFQHLA 281


>gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 386

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 109/381 (28%), Gaps = 54/381 (14%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  Y +     +G + R       T   A          +           T LK
Sbjct: 6   RKRGSKWYYSYESYDSNGNKKRYERVGGKTKKEAQQKLNEALYKR--DCGYVEVDNTILK 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SRKH 128
             +  + K     +   N+   +ES     I    G+   + +   HI S +     +  
Sbjct: 64  DYLENWLKQYIKPTRKENTYYRYESIIKNSINPIIGNVQLKNLKAIHIESMLNSNKEKNL 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T ++     T +      AV+ + +  N C  V+RPKR+       + E+     +  S+
Sbjct: 124 TNTTLQNIYTVLNAALNRAVKLQLINNNVCKFVDRPKRERFIAETLSIEEFNYILNSLSD 183

Query: 189 GSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------- 235
                L        L  GLR  +       ++      IK                    
Sbjct: 184 SYNDYLMKLALTITLELGLRRGELAGLTWDNIDLKNNKIKIINNLIKTGKGVTVTTPKTE 243

Query: 236 -------------ELPDGFMKLL---------------AMTPIGKETFFINNDKQKMNAT 267
                         +     K+L                      +  F+  +   ++  
Sbjct: 244 ESKRTLIISDTLVSMLKQHKKILNQNKLKYGEFYTKDNFFNNKKYDFIFVWENGIYVDPN 303

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            ++  F        +NK    H +R  +AT+    G     +    G   ++     Y+ 
Sbjct: 304 YWTHRFGRILKSLNINKKIRWHDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSH 363

Query: 325 GADRIRLGIKNSRRISSVVDS 345
             +   +    + +IS+++ S
Sbjct: 364 VTEE--MQKDATNKISNLMKS 382


>gi|239948007|ref|ZP_04699760.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922283|gb|EER22307.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 397

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 25/315 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTLKWLISE 77
           RI++    + + + A   A    +                 E  + P  +  T K L  +
Sbjct: 58  RIKIGRFPDLSIVDARAKAAELKSQIAKGINPTKENSTVSNELTDLPISEELTFKELFDK 117

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136
           Y  +    ++         +  D+  +         I    I+       +    +A +F
Sbjct: 118 YINNYAKHNIKR--WQDRIATMDRQAKHFYSLKISDIQRADIQQTFNDLTNVGKYTANRF 175

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-- 194
           L ++  +F  A+  E +  NP   +++  ++    R  TKE+  +F     E +   +  
Sbjct: 176 LETLSSIFNKAIEWELLEKNPVTGIKK-HKEQSRDRYITKEEAPRFFQTLEEETNQLMKD 234

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
                LY+G R S+      +++     +     T       +      +  +     + 
Sbjct: 235 FILISLYTGARKSNVLSMRWENISFIDKTWYISDTKNGEPHTVVLIDEAIKILQDRKAQV 294

Query: 255 FFINNDKQKMNATQF----SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                   + +++         +K    KAG+     H +R+  A+  A  GA+ + +  
Sbjct: 295 INEWVFPSETSSSGHLQEPKKAWKRICQKAGLKNLRLHDLRRTCASWMAINGASQYVIGK 354

Query: 310 TYGWKTVDQAETYTK 324
               K       Y +
Sbjct: 355 ALNHKHPRSTAIYAR 369


>gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 306

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 24/277 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           LI E+          + ++  ++        + II      + + +    I+        
Sbjct: 15  LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 74

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  + ++S++  F+WA  ++  A N   ++  PK  ++     +++ + Q   
Sbjct: 75  QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILG 134

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
            +S        +    FE L  S +R S+     +  + +++ +++          V   
Sbjct: 135 NFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFG 194

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                 L +    + T   +            +++N                  +  H +
Sbjct: 195 KPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVL 254

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R  +AT   D GA    L    G  ++   + YT  +
Sbjct: 255 RHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVS 291


>gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
 gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 25/289 (8%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV 123
            P +L+ L  +Y         + ++  ++              +      +    IR+ V
Sbjct: 2   APDSLEQL-DDYLDRL-ARRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYV 59

Query: 124 ESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +R H       S  + L ++R  F   +++  + +NP  +V  P+      R    + +
Sbjct: 60  GTRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAV 119

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIIT 234
                  ++    ++ R  +E    SGLR S+     V  +        ++  K G    
Sbjct: 120 AGLLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179

Query: 235 VELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
           V +    ++ +              +   F++   +++      +  +    K G+    
Sbjct: 180 VPVGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERV 239

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             H +R   A+   +A      +    G  T+   + YT   D  RL  
Sbjct: 240 HPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTH-VDFQRLAA 287


>gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 360

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 42/369 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           L   + K++ +   ++ Y   G+G+RIR     +             +   +        
Sbjct: 3   LTGHIEKKKGKFQVVLEYGIDGNGKRIRKYKTFDKESEAKKYLIQMLANEGKFIP----- 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               L   +  + +      +A  + I ++     + +       +++ T  ++      
Sbjct: 58  ----LNEFLDRWLEEYAKNYVAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQKFFNQL 113

Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             T S A   +  + +    K A++   +  NP   V+ P++  E        +  +   
Sbjct: 114 SQTLSQASVRKIYSVLNNALKTAIKWNMLKENPLEFVKLPQKYEEKKIKVWDIETVKKFL 173

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
              +  +   A    L++GLR  + C     ++      I  ++                
Sbjct: 174 EDIKDEKIHTAVTLALHAGLRAGEICGLTWDNVDFEKKCIHIKQALQKIGKEIIIKPPKS 233

Query: 233 ----ITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKA 277
                T+ +     + L      +               I+          F+  FK   
Sbjct: 234 KTSIRTIYMTSYLYETLLEEYKRQEPLREAYKKLGNFVCIHETGNPFCPDYFTHTFKKLV 293

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKN 335
           +  G      H +R   ATI   A           G          Y    D  +  IK 
Sbjct: 294 SCLGYPEIRFHDLRHTFATILLQAQTNPKIAAEILGHSNTKLFLNLYAHVLDEQK--IKA 351

Query: 336 SRRISSVVD 344
           + +I  ++ 
Sbjct: 352 THKIEEILG 360


>gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
 gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8]
          Length = 324

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 21/268 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138
              +  +   ++    +++    D    D+ +++   +R  V        +  S  + L+
Sbjct: 29  KRHSPRTCEHYQRDLQRLVAWLADNGLNDWSELSAHDVRRYVARLSRDGLSGRSIARHLS 88

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195
           S+R  +++ +R+     NP L +  PK      R    + + Q      E     +    
Sbjct: 89  SIRRFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLDATPEDPLEIRDLAM 148

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
           FE +  SGLR ++   A +  L      I+   K      + +    +  L      +  
Sbjct: 149 FELMYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERVLPVGRKAVAALQQWLSCRRA 208

Query: 255 F--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
                    F++    +++               G ++    H +R   A+   ++    
Sbjct: 209 LVTEGEKALFVSQRGTRLSRRSIQSRLSRWGILHGADQRLHPHLLRHSFASHMLESSGDL 268

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332
             +    G   +   + YT   D   L 
Sbjct: 269 RAVQELLGHADIATTQVYTH-LDFQHLA 295


>gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 99/275 (36%), Gaps = 17/275 (6%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---G 122
              +L+ L+ +Y     +  +LA  S  +++  F  I +      +  ++ +H+R     
Sbjct: 3   AQPSLQPLLDKYFDYLKYERNLAAKSIENYQRQFASICQTLSISSWSALSVEHVRQVLNH 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDM 179
              +  +P S    L+++R    + V  E ++ NP  +V+ PK+     +         +
Sbjct: 63  ARRQGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLNVDEMHQL 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             F        + +   E     GLR ++     +  LQ++       K      + +  
Sbjct: 123 LDFDDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDDGQLRVMGKGSKERLLPVGK 182

Query: 240 GFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
             +  +              +   F++  +++++  Q +   +  A +  +++  + H +
Sbjct: 183 KALTCVGQWLKVRGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   ++      +    G   +   + YT 
Sbjct: 243 RHSFATHILESSGDLRGVQELLGHANLSTTQVYTH 277


>gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
 gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136]
 gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133
           Y +       ++++  +++ YF   +      D   +T + I       V+ +  + +  
Sbjct: 96  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  ++   + +          +            ++E+M+          + R
Sbjct: 156 NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 211

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248
                +  +GLR S+      Q + +    I+    G          +L +         
Sbjct: 212 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREY 271

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              K  F      ++ + +      K  A KAG+      H +R   AT   + G     
Sbjct: 272 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 331

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +     Y   ++
Sbjct: 332 IQELMGHTDIKTTAIYLHVSN 352


>gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289]
 gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289]
          Length = 292

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
           I  +        + +  + IS+    +   +  ++ G    +  + T  +R  +E     
Sbjct: 2   IDMFLDYLRLERNYSPMTVISYRKDLEAFERFCQELGPQITWESVDTDVVRDWMEDMMDK 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               SS  + ++++R  +++A+R   V+ +P   ++ P+R+    +   + +M+Q     
Sbjct: 62  GNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPA 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             +        R        +G+R S+      + + +       T K      +     
Sbjct: 122 MWTDGYGDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKE 181

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + LA     ++          F     ++M   Q     K   ++      ++ H +R
Sbjct: 182 LEETLAAYRCVRDARTGDSSPALFRTEKGERMTNAQVRALVKKNLSRVSTLKKRTPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 242 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 276


>gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
 gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T]
          Length = 309

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 101/314 (32%), Gaps = 29/314 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           ++G  P RE    P  +   L       + +      LA N+   + S   +        
Sbjct: 1   MSGRAPAREAGLQPAHRAE-LDRFADALWLEH----GLARNTLAGYRSDLARFAAWLETR 55

Query: 110 DYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             R                SR   P+S  + + + R  ++  +    +A +P L+++ P+
Sbjct: 56  AQRLPAAAGADLAAYLAEFSRAAKPASQRRLIAAWRRYYRLLLANREIAEDPTLAIDTPR 115

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                 +  ++  ++   +  +  +    + R   E L  +GLR S+     +  +  N 
Sbjct: 116 AAERFPKTLSEPQVEALLAAPALDTPQGLRDRCMLEVLYAAGLRVSELVGLKIFAVGVNE 175

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFS 270
             ++          V L +     L                 +  F+      M+   F 
Sbjct: 176 GVVRVMGKGSKERLVPLGEIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFW 235

Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A  AG+     S H +R   AT   + GA    +    G   +   + YT  A 
Sbjct: 236 RLIKHYALAAGIAPERISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA- 294

Query: 328 RIRLGIKNSRRISS 341
           R RL   ++R    
Sbjct: 295 RERLKQLHARHHPR 308


>gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH]
 gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH]
          Length = 325

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC
           49188]
 gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ K+      L+ N+  ++E    Q +                G+     + +
Sbjct: 15  LAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +   +      +  + L  +R L +   ++         ++  P++     +P T 
Sbjct: 75  --FLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           ED +       Q        ++       L   GLR S++       L ++       T 
Sbjct: 133 EDARRVVAADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLMGDALSDSTARSITITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280
           K      V L     + +A            +      A              +      
Sbjct: 193 KGNKARLVPLLPIVHRAVAQYRTLCPFDLSADKPLFRGAKGGVLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTERL 304


>gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
 gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799]
          Length = 296

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 24/281 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
                Y ++      +  +  ++    ++ +      G  D++ + T+H ++ +      
Sbjct: 6   QAFRGYLENE--RQYSAYTVRNYLKELERALPLLQAQGLTDWQGLRTQHCQALLAKLHRQ 63

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P S    L+++R L K+ +R+  +  +P + V+ PK+     +    + + +     
Sbjct: 64  GLSPRSLSLTLSALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQVNRLLELN 123

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
            +     + R   E    SGLR ++        L      ++    G     + + +   
Sbjct: 124 DDDPLVIRDRAMMELFYSSGLRLAELVALDCPQLSLTDREVRVMGKGGKERILPVGNKAS 183

Query: 243 KLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
           + LA                  F++N   +++                ++     H +R 
Sbjct: 184 EWLAKYLALRPALLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPHKLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   +A      +    G   +   + YT   D   L 
Sbjct: 244 SFATHLLEASKDLRAVQELLGHANLSTTQIYTH-LDFQHLA 283


>gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
 gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909]
          Length = 276

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 20/261 (7%)

Query: 91  SRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           +  S+      ++    + G   ++ +    +RS V   K      SS    L+++R   
Sbjct: 2   TITSYRRQLQALMEMGEQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFL 61

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLY 201
            W V Q  +  NP   V  P+      +    +++ +            + R   E +  
Sbjct: 62  DWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYG 121

Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKE 253
           +GLR S+      +H+   +       K      V +    +  LA             +
Sbjct: 122 AGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLELRELFEPVDD 181

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F+ N  ++++A      F     K GV  +   H +R   AT   ++      +    
Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241

Query: 312 GWKTVDQAETYTKGADRIRLG 332
           G   +   + YT   D   L 
Sbjct: 242 GHANLTTTQIYTH-LDFQHLA 261


>gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
 gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina
           NK-01]
          Length = 298

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  Y +       ++V++   +     +        G  D+ ++ T+++R  V       
Sbjct: 5   LDAYLEHLRRERQVSVHTLDGYRRDLGKVLAFCEAEGLSDWAELDTRNLRRLVARLHQQG 64

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + L++ R L+++ +R+     +P   +  PKR+    R    +   Q      
Sbjct: 65  LSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L      I+ +     +  + +     
Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVRELPVGSLAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L                 FI+   +++      +        + G +   H +R   A
Sbjct: 185 QALEQWLPLRKLANPSDGAVFISQQGRRLGPRAVQLRVHQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L     +   R      S+
Sbjct: 245 SHMLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLANVYDQAHPRAKRKGGSE 298


>gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916]
 gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916]
          Length = 387

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 111/383 (28%), Gaps = 59/383 (15%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++GK  +       R  +G+ IR  +   S       +         +   +   K T L
Sbjct: 9   KNGKKYFRVTASLGRDYNGKLIRKEFYGSSK--KEAENKRDEYLNGIKSGLNIDYKNTVL 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT 129
             L+  +        +  +S   +E  +   I+  +        + T  ++         
Sbjct: 67  GELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYSA 126

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQF 182
             ++         +R    +AV + Y+  NPCL  +      +  +        +     
Sbjct: 127 GKTSSVIENLNKLLRTFLNYAVNEGYILKNPCLGSKIIIPGNKDKKENEIEIFTDKEITA 186

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                EG + +      L SGLR  +        +  + F I+  K+             
Sbjct: 187 LKKALEGHRLKCLILLALGSGLRQGELLALRWSDINFDTFEIQVNKSIKHVKIISPDGTG 246

Query: 233 ---------------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQK 263
                            V +P   + +L                  I K   F N   + 
Sbjct: 247 ERKTIEQSPKSKTSNRIVPIPSKLINVLEEHKALQDIEKKAAGSSYIDKNLIFANEIGRP 306

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
           +        +K     AG+  K  H +R   AT   + G     +    G K +   A+ 
Sbjct: 307 ILVKNIFRIYKNILISAGIKHKKFHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADI 366

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           YT    + ++      +++ + D
Sbjct: 367 YTHVMPKEKVL--AVDKLNDLFD 387


>gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
 gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001]
          Length = 315

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 90/304 (29%), Gaps = 42/304 (13%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114
            T +  + ++ +        +  +  +++    + +                G    R  
Sbjct: 1   MTAEEAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMVGLGLISLRDF 60

Query: 115 TTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                    E+ K T           +  + ++++R  FK+  R++ V       +  P+
Sbjct: 61  RAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPR 120

Query: 166 RKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K    RP  K+        +        E  +    F  L   GLR S++    +  L 
Sbjct: 121 TKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLD 180

Query: 219 NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQF 269
               S   +   K G    V +     + L            +         +++     
Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAWRGRHPAPTPDAPLFVGIRGKRLQPAIA 240

Query: 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +     +G+    + H +R   AT   + GA    +    G  ++   + YT  AD
Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LAD 299

Query: 328 RIRL 331
             RL
Sbjct: 300 EARL 303


>gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 343

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 41/302 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVE----SRKHTPSS 132
            +L+ N+++S+   F  ++            +     ITT  I   ++     RK + SS
Sbjct: 28  RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183
               L +++   K+   +    I+ C  V     K    R  T  D  + +         
Sbjct: 88  RNNRLAAIKAFAKFLAWKSPEHIDWCHHVSLIPSKKTEKRMITYMDKSEIEALADAPLKT 147

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             +    S+  +   F+  +G R S+     V+ +               K        L
Sbjct: 148 CKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPMVTLHGKGRKERICPL 207

Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286
            + F  LL      K        N   Q M+        K  +    +N         S 
Sbjct: 208 WEDFWDLLKPFIDNKLPNDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRPSP 267

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R  +AT   ++GA    +    G  ++D    Y + +   +L  +  ++    V SD
Sbjct: 268 HVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL--EALKKCEQSV-SD 324

Query: 347 DP 348
            P
Sbjct: 325 TP 326


>gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
 gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035]
          Length = 323

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 91/295 (30%), Gaps = 33/295 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG---VES 125
              I  + ++       A N+ +++            +     + +T   I       ++
Sbjct: 5   ARWIDLFLEAQAAELGAAKNTLLAYARDLKDFSEWVENQGLALQTLTQPDIDRYLVFCDA 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178
           +    ++  + L+++R L+++A  +   A NP + ++ P +     +  ++       + 
Sbjct: 65  QGLARATRARRLSAIRQLYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDM 124

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                   SE S+       L  +G+R S+     +   + +   I    K G    V L
Sbjct: 125 APAHGRTASERSRNACLVALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMVPL 184

Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                  L+                        F        +   +F    K  + KA 
Sbjct: 185 SPPARAALSDWLAIRDAEESARRAKGVQSSPYLFASGGASGHLTRHRFYNLIKEISVKAH 244

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           V+    + H +R   AT     GA    +    G   V   E YT   +     +
Sbjct: 245 VDPDKVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQAL 299


>gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2866]
          Length = 295

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +      +  F              +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKGEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1]
 gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC]
 gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila
           psittaci 6BC]
          Length = 312

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKIT 115
           +Y K+      + ++  ++    +                            +  +  +T
Sbjct: 10  DYLKNIKTA--SPHTLRNYCIDLNDFKNFLEKHGELTPSPPICLVTKERQEAELPFSLLT 67

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R  +           +  + L++++   ++ V+   +  +P  +++ P+   E   
Sbjct: 68  KDAVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKHRILPEDPTETIQGPRLPKELPS 127

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T E ++   +        G + R   E    SGLR S+        +      I+ + 
Sbjct: 128 PITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFTSHLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKAT 278
                  V +     + L                +  F+N   +++        F+    
Sbjct: 188 KGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKRLTTRSIDRKFQKYLR 247

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++G+  N + H +R   AT   + G     + A  G  +++    YT  + +++
Sbjct: 248 QSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301


>gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 296

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 89/272 (32%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +  Y         ++ ++  +++    +   I++ +G   ++++T   +R  V      
Sbjct: 4   ALQHYFTYLRVERQVSPHTLSNYQRQLARVTAILQGAGITQWQQVTASVVRYVVAQSSKQ 63

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S    L+++R    + V+Q  + +NP   +  PK+     +    + +Q   + 
Sbjct: 64  DGLKEKSLALRLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLLLAN 123

Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + R   E L  SGLR S+     +  +      ++          V      
Sbjct: 124 DSKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKERVVPFGRYA 183

Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
              +                 F++    +M+     +  +    + G+  + + H +R  
Sbjct: 184 SHAIQQWLKVRLLFNPKDNALFVSQLGNRMSHRAIQMRLETWGIRQGLNSHLNPHKLRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   +A +    +    G   +   + YT 
Sbjct: 244 FATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275


>gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
 gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM
           20098]
          Length = 316

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 90/297 (30%), Gaps = 40/297 (13%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
           T +  I E+         L+ N+  S+ +     +      G     +IT   +R  +  
Sbjct: 5   TFEKHIREFETYLGANRGLSGNTLKSYRTDVLDCLTYLESQGIEALDEITIDDLRGWMGQ 64

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           R  +   SS  + + ++R  F W      +  NP  +++ PK         +++  ++  
Sbjct: 65  RSPSHARSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLM 124

Query: 184 SFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232
               E            +     E L  +G+R ++     +  +   N     T K    
Sbjct: 125 DREDETAAQSPDDPKALRDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQ 184

Query: 233 ITVELPDGFMKLLAMTPIG----------------------KETFFINNDKQKMNATQFS 270
             V         +                                F+    ++++     
Sbjct: 185 RVVPFGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMAR 244

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 A +AGV     H +R  +AT   D GA   E+    G  ++   + YT  +
Sbjct: 245 RVVHDAARRAGVPDVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVS 301


>gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
 gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++ ++ ++     +   L+  +  ++ +    ++   G     +++T  IR+ + ++   
Sbjct: 21  IEAILMDFLDELTYSRRLSGATVRAYRADLMPLLA--GLDHISELSTPVIRAHLGAKHAE 78

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  TS+R    W V ++ +  +P L +  PK+        + E +++     
Sbjct: 79  GAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKV 138

Query: 187 S-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
           S       ++     E L  +G+R  + C+A V  +  +   I    K      V     
Sbjct: 139 SSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAP 198

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGVNKSAHGVR 290
               L      +  F  +   +            N  Q        A     + S H +R
Sbjct: 199 AEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-----DVSPHALR 253

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             +AT   + GA    +    G  ++   + YT   ADR+R
Sbjct: 254 HSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294


>gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599]
 gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 290

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 21/286 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSG--- 122
           L   I  + +       +  +   ++       R             ++    I      
Sbjct: 6   LTQAIDIFLQYLSSIGRSEQTITGYKKDLSYFTRFLERKYNCEPYIDEVLVTDIEDFLLY 65

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               R + P+S  + L + R  F +A ++E+V+ N  LSVE+ K + +      +E    
Sbjct: 66  LKTERAYAPASRQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYL-EEAEVD 124

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPD 239
                 +    RL    L  +G+R S+     V  ++ +     +   K      + +  
Sbjct: 125 ELVSEIDHPLIRLVVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISP 184

Query: 240 GFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
             + +L    +          FF      K++    +        + G     +AH +R 
Sbjct: 185 RLLPMLKEYVLHHRPDSDSNRFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
             A+          ++    G  +++    YT    D++R  I + 
Sbjct: 245 SFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISHL 290


>gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331]
          Length = 324

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 43/297 (14%)

Query: 78  YRKSAH-WGSLAVNSRISFESYFDQII---RKSGD-FDYRKITTKHIRSGVESRKHT--- 129
           Y  S      L+ ++  ++     ++    +  GD + +  IT  HIR            
Sbjct: 13  YLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFHIRKFAAQLHSRGLN 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQ 181
           PSS  + L++ R  F+W   Q  +A NP   V+ PKR     +                 
Sbjct: 73  PSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVASGNPL 132

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
             +  S     +  FE L  SGLR S+     + + +                       
Sbjct: 133 ADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEVTVTGKG 192

Query: 230 GTIITVELPDGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKA 277
           G   +V +    ++ +A                     F+     +++     +  K  A
Sbjct: 193 GKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQLRLKHHA 252

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              G+  N   H +R   A+           +    G  ++   + YT   D  RL 
Sbjct: 253 QSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYT-SLDFQRLA 308


>gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1]
 gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC
 gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1]
          Length = 299

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH-- 128
           +  Y         ++ ++ + +    D++    ++ G  D++ +  + +R  +    H  
Sbjct: 5   LEAYCAHLRNERQVSEHTLLGYRRDLDKVIAYCKEHGIADWQALQIQQLRQLIARLHHHG 64

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
            +  S  + L+++R L+++  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     + HL           K G    + +     
Sbjct: 125 DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++     +  KA   +  G +   H +R   A
Sbjct: 185 EALQAWYRLRGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L         R      +D
Sbjct: 245 SHVLESSQDLRAVQELLGHADISTTQIYTH-LDFQHLAAVYDSAHPRAKRSKGND 298


>gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 374

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 15  IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 70

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++ K             +  +    I+ K        I    I+   E  
Sbjct: 71  -SMTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 130 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 189

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 190 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 249

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L        T  +    +    M  +    W         + +
Sbjct: 250 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 309

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 354


>gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 355

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 96/293 (32%), Gaps = 38/293 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE--SRKHT 129
           +  +          AVN+R+++E     + R             T+ +R+ +    +   
Sbjct: 41  LDAFLDMLTAERGAAVNTRLAYERDLADLGRWLAQRGVALEGAGTEDLRAYLAVQGKDGA 100

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           P +  + L++MR  +++ + +   + +P   ++ PK+     +  ++ ++    S     
Sbjct: 101 PRTVARRLSAMRQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEVGAMLSTAEAR 160

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMK 243
              EG +     E L  +GLR S+     +  +  +   +    K G    V L D  + 
Sbjct: 161 GGPEGLRLVALLEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERMVPLSDPALA 220

Query: 244 LLAMTPIGKETFFINNDKQKM------------------------NATQFSIWFKAKATK 279
            LA     +  F                                    +F+   K  A  
Sbjct: 221 ALAAYIPVRAHFIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGYLTRQRFAQLLKQLAID 280

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AG++    S H +R   AT   D GA    +    G   +   + YT      
Sbjct: 281 AGIDPEKVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTER 333


>gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1]
          Length = 312

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 33/290 (11%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
            +I  + +          ++  ++++       +         + +     ++ S + + 
Sbjct: 5   AVIDRFLEMMSAERGACAHTLSAYQNDLQWAHDQLCSRSVSLFSAQREDLINLLSLMHTA 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------------- 172
               +S  + L+++R  +++   +     +P   ++ P+++    +              
Sbjct: 65  GFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLLDRA 124

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
               +             + ++  E L  +GLR S+     VQ ++     I  +     
Sbjct: 125 QLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGKGEK 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAGV 282
              V L D   ++++   + ++            A            +   K  A +AGV
Sbjct: 185 ERMVLLSDKACQVISQWLVLRDQGKDAASFYLFPARSSTGYVARQFVARGLKELAERAGV 244

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 245 KSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEER 294


>gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str.
           'morsitans']
 gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 303

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  +         L+  +R S++        +I + G  ++R++    +R+     K   
Sbjct: 12  VDAFLHYLRVELQLSAKTRESYQRQLYTVIVLIDEMGLTEWRQLEVSQVRALAARSKRQG 71

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V  + +  NP   V  P+      +    +++       +
Sbjct: 72  LQSASLALRLSALRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDEVDHLLDIDT 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E +  +GLR ++        +      ++          + +    + 
Sbjct: 132 RDPLALRDRAMLEVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKLPIGATAVT 191

Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      ++ +       FI N  ++++A      F     K GV  +   H +R   A
Sbjct: 192 WLTRWLTLRDRYAPKDDAVFIANSGRRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   ++      +    G   +   + YT   D   L 
Sbjct: 252 THMLESSGNLRAVQELLGHANLSTTQIYTH-LDFQHLA 288


>gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd
           KW20]
 gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
 gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC
 gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20]
 gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW]
 gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127]
          Length = 295

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 376

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 96/304 (31%), Gaps = 30/304 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  + +     +   ++   ++     +++ + GD     I    + +  +     
Sbjct: 63  FSQLVEIWMQEKE-TTCRPSTLYQYKRILRSRVMPEFGDKKLSNIKPLTVHNFHQKMIKE 121

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +     +    ++ +    V  E ++ NP    +RPK K +    WT E    F    
Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMISSNPAKKAKRPKVKKKAQASWTIEQAMTFIDCA 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------G 230
                  +AF   L++G+R  +        +     +I  Q+T                 
Sbjct: 182 KLKGSYYIAFVLALHTGMRIGEVLALQWGDIDFEKKTIHVQRTLTLVDGKYVLGETKTEA 241

Query: 231 TIITVELPDGFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +   + + +  +  L      K+           +K+ ++        KA      V   
Sbjct: 242 SNRVIPMTEELVDELVEYQKYKKENPLDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVV 343
             H +R+   TI  D+   A  +    G   V      YT   +  +  I+ + ++ + +
Sbjct: 302 RFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQ--IEAAEKLQNAL 359

Query: 344 DSDD 347
            S  
Sbjct: 360 KSGR 363


>gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2]
 gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2]
          Length = 315

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 98/303 (32%), Gaps = 36/303 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG 122
           L++ ++E  K     + + N+  +F++  ++ I            D D++      I++ 
Sbjct: 13  LEFWLNEAIKDRKLLNQSENTIYTFKNSIEKFIEFCYLERINDYPDLDFKDFNKYFIKNY 72

Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   +   + PSS    L  +   FK+        ++    +++   K E    +T  + 
Sbjct: 73  ISYLKDLNYKPSSINTHLKYLYAFFKFISENNEDGVDLLYKLDKIFLKEEKNVIYTFSNE 132

Query: 180 ---------QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI---- 224
                        +     +  R AF   L   +G R S+        ++ N        
Sbjct: 133 ELEKIQLALINKLNLTKSYTTFRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYLKL 192

Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                  +         ++  +   +L     I  E F  +    K   T    + K   
Sbjct: 193 TGKGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITSIQSFNKTLL 252

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336
              G+  + H  R   ATI  + G   + +    G  ++      Y K  D+ +   +  
Sbjct: 253 KNLGIKGNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAK--QEAI 310

Query: 337 RRI 339
           R++
Sbjct: 311 RKL 313


>gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 330

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 30/285 (10%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126
             +  S A    L+  +  ++E    Q +    G         D   +    +R  +  R
Sbjct: 36  RRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQR 95

Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   + A      L  +R   ++  R          +V  PK+     +  T  +  +  
Sbjct: 96  RKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVV 155

Query: 184 SF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
           +            ++       L   GLR +++           + S++    G     V
Sbjct: 156 TADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLIPADFSGPVTSLRVTGKGGKTRIV 215

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286
            +     + +              +     A              +      G+    + 
Sbjct: 216 PMIAAAAEAVETYRKLCPYHIEPEEPIFRGARGAKLQPAIIQREMQKLRAALGLPDSATP 275

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 276 HALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 319


>gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
 gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87]
          Length = 297

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 93/264 (35%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
            + ++++  ++E+      + ++ +    D + +    IR+ + S   +     S  + +
Sbjct: 14  KNYSLHTLKAYEADLLSFHEFLLAEFECSDLKNVDYAQIRNWIVSLSESGVSNRSINRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPR 193
           +S++  + +  +   ++I+P       K   +   P++K      +    +   EG + +
Sbjct: 74  SSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDIDTDSFEGIRDK 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT----------VELPDGFM 242
              E    +GLR  +    G+  L           K                +EL     
Sbjct: 134 AIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLLKSVAKTIELYIEQR 193

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADA 300
             +          FI++   KM+ +          +K  A V KS H +R   AT   + 
Sbjct: 194 SHIVPDTAKTSRLFISSKGDKMSESLVYRIINTYFSKVSAKVKKSPHILRHSFATHLLNE 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 254 GANLNAVKELLGHSSLAATQIYTH 277


>gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 385

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 12/268 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHTPSSA 133
           I+ YR        + ++  ++ ++ ++ ++          +   + R           S 
Sbjct: 93  INAYRVYMKGLRYSQSTIKTYCTFTEKFLKFHNYK--TTFSQNDVSRFMEAEIALKSYSI 150

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 +  L K        A      + RPK+        +KE++       +   + R
Sbjct: 151 SSHRQCISAL-KHYFEFSDQAEFEISELVRPKKSRFLPTVLSKEEIIDLL-RLTRNLKHR 208

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIG 251
                +  SGLR  +     ++ +  +   I  K  K      V L + F+ LL      
Sbjct: 209 CILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAESFLPLLYNYLQT 268

Query: 252 KETFFIN---NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
            E         D +K +++    + K    +A +    + H +R   AT   + G     
Sbjct: 269 YEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTPHTLRHSFATHMLENGTDLRY 328

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIK 334
           +    G    +    YT  A +  + I+
Sbjct: 329 IQELLGHSKPETTMIYTHVAKKDLMKIQ 356


>gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810]
          Length = 295

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQIQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 92/312 (29%), Gaps = 31/312 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYR 112
           +        K    +   I ++     H    A  +   + +    +        +FD  
Sbjct: 3   EDGKSAKAPKVEGQMAEAIEDFADFQLHVRGRAEATVRGYRADLRDLARSVPTFAEFDLN 62

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +      +  E +  + S+  +   + +    WAVR+ ++  +    +  PK       
Sbjct: 63  SLRQWLAEAVTEGK--SRSTLARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPT 120

Query: 173 PWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKT 226
               E   +              +     E L  SG+R ++  R  +  +     +   T
Sbjct: 121 VLAPEQAGELMGNAVSADEVHFLRDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVT 180

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKA 277
            K      V         L                   F+ +   +++  Q     +  A
Sbjct: 181 GKGNKQRVVPFGHAAEDALKQWIDKGRGEIASAETEAVFVGSRGGRIDQRQVRRIVEKAA 240

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              G    + HGVR  +AT   + GA    +    G  +++  + YT  +         +
Sbjct: 241 KVTGAQGLTPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVS---------A 291

Query: 337 RRISSVVDSDDP 348
           +R+  V D   P
Sbjct: 292 QRLQRVYDQAHP 303


>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
           X14]
 gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
          Length = 300

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 85/288 (29%), Gaps = 34/288 (11%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRK 127
            +         L+  +  ++     Q    + +  G+      +  +    +R+ + +R+
Sbjct: 3   RWLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARR 62

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S ++ L  +R   ++  R+    +    ++  PK      +P      ++F  
Sbjct: 63  ADDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFAD 122

Query: 185 FWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 + R  + +            SGLR S++     + +           TG     
Sbjct: 123 ASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGNKT 182

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-- 283
            +      +LA+          +   +           ++     +         G+   
Sbjct: 183 RMVPVLQNVLALVHEYVAVCPHSLPPEGPIFVGARGGPLSPRIIQLTMARMRGALGLPDS 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 243 ATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDSERL 289


>gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 370

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 113/371 (30%), Gaps = 44/371 (11%)

Query: 12  TKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            K+  + GK  Y    G     GRR +       T   A   ALT    +          
Sbjct: 5   VKKNKKTGKYFYIVDIGIDPLTGRRKQKKKRGFITKKEAEN-ALTKLLSEVHTGTYVEPS 63

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
                  +  +  +  + S+ + +    + Y + +II   G+    K+T+ H+++ V S 
Sbjct: 64  KLLYGEYLESWFNTKKY-SVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSL 122

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +       +  + +  +R   + A+  E +  N     + PK   E +  W + ++Q F 
Sbjct: 123 RDEGLKRGTIEKIIKLIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEHEVQFFL 182

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                 S+  + F   L +G+R  +      + +      +   +T +            
Sbjct: 183 KAAQ-DSRYSIVFHMALVTGMREGELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLGGKT 241

Query: 233 ----ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFK 274
                 + LP   +  L                     +          +N         
Sbjct: 242 KSSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLN 301

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332
           A   K  V K   H +R   AT+    G     +    G   +    +TY+       + 
Sbjct: 302 ALIKKVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQ 359

Query: 333 IKNSRRISSVV 343
                +I  ++
Sbjct: 360 EDAVNKIEEIL 370


>gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
 gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23]
          Length = 383

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 15/264 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133
           Y +       ++++  +++ YF   +      D   +T + I       V+ +  + +  
Sbjct: 111 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGHDLDLLTVEDINSYMLHMVKEKHISATQQ 170

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  ++   +            +            ++E+M+          + R
Sbjct: 171 NMRINAIKFYYEKVRKGRRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLPNRKHR 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248
                +  +GLR S+      + + +    I+    G          +L +         
Sbjct: 227 CMISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREY 286

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              K  F      ++ + +      K  A KAG+      H +R   AT   + G     
Sbjct: 287 RPQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 346

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G   +     Y   ++  +
Sbjct: 347 IQELMGHTDIKTTAIYLHVSNAHK 370


>gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus
           HTA426]
 gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 289

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 28/280 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTP 130
           EY +     + +  + + +    +Q  R     G     +++   +R  +      +   
Sbjct: 2   EYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQQLAS 59

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + ++S+R  +K+ +R+   A NP      PK++ +       ++++       E +
Sbjct: 60  RSVARKISSLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVNDENT 119

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
               +     E L  +G R S+ C   +  +     ++    K      V       + L
Sbjct: 120 ALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPAREAL 179

Query: 246 AMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                                 F+N     +               A +  N S H +R 
Sbjct: 180 ERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPHVLRH 239

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             AT   + GA    +    G   +   + YT    DR+R
Sbjct: 240 TFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 279


>gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 370

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 116/357 (32%), Gaps = 35/357 (9%)

Query: 14  ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69
           ++ + GK  +Y R      G+  R+          A   A      K   I+  R +   
Sbjct: 10  KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARKEAELILARKLADISDARTETNI 69

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVES--R 126
           T+  L   +        +   +     +    +++  G+    K IT   +   ++S  +
Sbjct: 70  TIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLKYFGEDAIAKNITKPMVTKYLQSSLK 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183
           K T S+   +   M  ++ +A+   Y+  NP        +P++ T     +  ++     
Sbjct: 130 KKTNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNNL 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +       F+F+  +G+R  ++     +++ +    I                   
Sbjct: 190 FAVIDRPDYLRLFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLAS 249

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNK 284
             +V LP   ++++            ++                 +++ K K+ +AG+++
Sbjct: 250 FRSVFLPKQAVEIIKWFKQYDRNTEPDDFIFINQLKHVPFKMNTVALYLKNKSREAGIDR 309

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
             + H  R    +  A+ G   H +    G    +   E Y       +   +   +
Sbjct: 310 KITTHFFRHTHISKLAEQGVPLHVIQKRVGHTKAETTREIYLHVT---KKMQEEMEK 363


>gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
 gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei]
          Length = 543

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 28/287 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126
            L+S + K     + +V++  ++       I    D   + +++    +R  V  R    
Sbjct: 241 QLLSMWIKDRKIQNQSVHTLDAYFRDVSNFIDFCYDKQIELKQVEAADLREYVAYRVEKD 300

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + SS  + LTS+R   KWA +  Y+ IN     +  ++          E + Q     
Sbjct: 301 QLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLPGMIDIETVNQIMDQP 360

Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       + +   E L  SGLR ++     ++ +      ++          V  
Sbjct: 361 EPEKPIEKQLWLRDKAILELLYSSGLRLAEVQSLAIRDIDFTRHLLRITGKGNKTRIVPF 420

Query: 238 PDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                  L         +          FI      ++  Q     K +A +AGV  +  
Sbjct: 421 GSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIENRVKYQALRAGVNVDLH 480

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H +R   A+           +    G   +   + YT   D   L 
Sbjct: 481 PHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTH-VDFDHLA 526


>gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 363

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 88/325 (27%), Gaps = 21/325 (6%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + GK  +  F    G  IR        +  A                     P   + ++
Sbjct: 4   KRGKTWWISFTAADGTYIR-RSAGTEDYAAAKAIEQEHRGAAWRQKELGVDPPRMFEEVM 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSS 132
            EY   A     +  +   +      ++   G      +  K IR           + ++
Sbjct: 63  IEYLDHARQTQRSFAT-TQYR--VKALLEHFGGRVMNDLAGKDIRKYSSLRMKAGKSAAT 119

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSEG 189
             + L ++     W   +    +   +     +     +R  T+ ++    +       G
Sbjct: 120 VNRELAALSAAINWCAVELEWKLPNPVKGRTLREAESRVRWLTRAEVESLCREARRQRGG 179

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL 245
                     + +G R ++      + +      I       K G   ++ L +G M  L
Sbjct: 180 DMLEAFIRLAVNTGCRKNELVGLEWRRVDIANRLIYLEGANTKAGKRRSIPLNEGAMAAL 239

Query: 246 AMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                 +      +    +          S  F     +AG+ +   H +R   A   A 
Sbjct: 240 KGRMEFRAEHNPASPWVFIRKNGDKVLDLSEGFNGACDRAGIKDFVIHDLRHTCAAWLAT 299

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           AG    E+    G  T    E Y  
Sbjct: 300 AGVPLIEIRDLLGHSTTQMTEKYAH 324


>gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 353

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 113/332 (34%), Gaps = 21/332 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P V    ++ G    Y R    R           +  A  +    + PK       +++P
Sbjct: 7   PGVKVYVSK-GITYAYDRASGERLTPPHEIGTPGWWTALQAIRAKAKPK------VKEEP 59

Query: 69  TTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVES 125
            T   L+  YR S  + + LA  +R  +++  D +  K  D      T   +        
Sbjct: 60  GTWGALVISYRSSPRFLNDLAPRTRADYQTVLDHL-GKLHDRPISAWTRGFVAGLRDEAQ 118

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K     A   L+ + V+F   + +E  + NP   V++ +R     R       +++ + 
Sbjct: 119 KKKGRRFANYVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPEEWDAV 178

Query: 186 WSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFM 242
            +  S   R A       G R  ++  A          +    + K+G  + V+ P+   
Sbjct: 179 VAAASPELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKVQAPEIVA 238

Query: 243 KLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSAT 295
           + LA  P    T   +N+  Q      F   F                 + HG+R  +AT
Sbjct: 239 QALAALPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHGLRHTAAT 298

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                G     +    G +T   A  Y++ AD
Sbjct: 299 QMRQLGFDTRTIADMLGQETEGMAAHYSREAD 330


>gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
 gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare
           Y25]
          Length = 307

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 81/290 (27%), Gaps = 29/290 (10%)

Query: 71  LKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           L   +  +   S      A  + +++       +           G     +I    +R+
Sbjct: 6   LADALDRWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEVADMRA 65

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +   + T     S  + L++++  + W   +E       L+   PK +    RP   +D
Sbjct: 66  WMAQMRGTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRPLEVDD 125

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            ++               ++       L  SGLR S++     +          T K G 
Sbjct: 126 ARRLMDRVEVQSNEPWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPDVLRMTGKGGK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK 284
              V +       +           +              +        +    + G+  
Sbjct: 186 QRLVPVLPIAAAAVKDYVRRTPYAPVAGAPLFRGVRGGALSPRIIQKMIEQVRLQLGLPA 245

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + H +R   AT    AG     +    G  ++   + YT   D   L 
Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYT-AVDAAHLM 294


>gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 323

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 83/290 (28%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125
           ++++         L+  +  ++     Q ++              + ++    +R+ + +
Sbjct: 24  MAKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAA 83

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176
           R+       S ++ L  +R   ++  R+    +    SV  PK +    +P         
Sbjct: 84  RRADDIAGRSLMRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPLPIAAAKRL 143

Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              ++    +       +       L  SGLR S++     + +            G   
Sbjct: 144 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGN 203

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
              +      +L            N               ++     +  +      G+ 
Sbjct: 204 KTRMVPVLQNVLEQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 263

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312


>gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840]
 gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840]
          Length = 315

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 15  LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 74

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 75  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 132

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 133 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 192

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 193 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 252

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 253 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GIDTQRL 304


>gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 89/304 (29%), Gaps = 42/304 (13%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKI 114
            T +  + ++ +        +  +  +++    + +                G    R  
Sbjct: 1   MTAEEAVQKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMIGLGLISLRDF 60

Query: 115 TTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                    E+ K T           +  + ++++R  FK+  R++ V       +  P+
Sbjct: 61  RAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPR 120

Query: 166 RKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K    RP  K+        +        E  +    F  L   GLR S++    +  L 
Sbjct: 121 TKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLD 180

Query: 219 NNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQF 269
               S   +   K G    V +     + L            +          ++     
Sbjct: 181 VMRSSNVLRILGKGGKERLVPVLPVVQQALEAWRTRHPAPTPDAPLFVGVRGKRLQPAIA 240

Query: 270 SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +     +G+    + H +R   AT   + GA    +    G  ++   + YT  AD
Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LAD 299

Query: 328 RIRL 331
             RL
Sbjct: 300 EARL 303


>gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
 gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 89/290 (30%), Gaps = 24/290 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+ +I EY            +  +      Q+ R      G  +   I   H++  V ++
Sbjct: 3   LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEDINPLHLKQYVRTK 62

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DM 179
                 P S +     +R  F W  ++EY+  N    VE PK   + ++ +T +     +
Sbjct: 63  HKEGLQPQSIVSMFKMVRAFFSWCQKEEYLKGNIAKKVELPKVPKKLLKGFTIQEVSAMI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKT 229
             F       ++ +     L   GLR  +      Q+++          N    +     
Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEVRGLLTQNVKETTILVNGKGNKERIMFISPP 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
              I +       + L    +  + +F++     ++        K    +  V     S 
Sbjct: 183 LKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H  R F A      G     L    G   V   + Y +  +   L  K  
Sbjct: 243 HTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292


>gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 290

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 93/273 (34%), Gaps = 22/273 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126
           +  +          ++ +  ++        R   +FD    +  I +  +R+ VE     
Sbjct: 2   VDRFLDYLRLEKGYSLKTIDNYRDDLKGFERFYKNFDETLSWESIDSDIVRNWVEFMMDN 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQ 181
           K   +S  + L+++R L++++++  +V  +P   ++ PK+     +        +    +
Sbjct: 62  KAAAASVNRRLSALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQDE 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
             +   +    R     L  +G+R  +     +  +  +      T K      +   + 
Sbjct: 122 MWADTYQDLLARTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVIPFGEE 181

Query: 241 FMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292
               L      ++       FF     +++N  Q     K   +K      ++ H +R  
Sbjct: 182 LESSLKAYLGKRKAIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKRTPHVLRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   +  A    +    G +++   E YT  
Sbjct: 242 FATAMLNHNAGLESVRKLLGHESLSTTEIYTHT 274


>gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
 gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353]
          Length = 303

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 94/284 (33%), Gaps = 27/284 (9%)

Query: 71  LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128
           L+  I+ Y +   +   L  N+  ++     Q +    G+   ++   ++I    +  K 
Sbjct: 3   LQETINMYLEYCEYRKELDWNTLKAYRIDLRQFVEFIEGEEPSKEKIERYITYLHKKYKQ 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +  + + S++V + +   +E +  NP      + K +    R   +E++++  +   
Sbjct: 63  K--TVKRKIASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLNCMY 120

Query: 188 EGSQ-----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIIT 234
           +  +                E    +G R  +     ++++      I+         I 
Sbjct: 121 KELRESEKNQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKERIV 180

Query: 235 VELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
               +  ++LL                FFIN  K +       +  K    +A + +  +
Sbjct: 181 QIGEESVIELLNRYYTENKEEIHACGYFFINKRKSRFTEQSIRLMLKKYTKQAKIERNIT 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   AT   + G     +    G  ++   + Y   + + 
Sbjct: 241 PHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQK 284


>gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
 gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2]
          Length = 330

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 96/306 (31%), Gaps = 52/306 (16%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDY---RKITTKHIRSGVES 125
           L   +  + +        + ++  S+    D+      G        ++  + +R+ V S
Sbjct: 6   LAEHVDGFLRWLQVEKGYSPHTVSSYRRDLDEFAALDRGAGPLERVDQLDARRVRAFVYS 65

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              ++  SS  + L+++R  F++  +   +A +P  +V  PK +       + +++    
Sbjct: 66  LHGRNRSSSVARKLSALRTFFRYLQKNGVIAHDPAAAVAAPKAEGYLPTVLSVDEVFSLL 125

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                  +  ++ R   E L  +G+R ++     ++ L      ++ +        V + 
Sbjct: 126 EMPGPADTYAARDRAMLELLYSTGMRVAELAALNLEQLDLAEGMVRVRGKGNKERLVPIG 185

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM---------------------------------- 264
               + +      +E       +++                                   
Sbjct: 186 TPACEAVQAYLPQREVLLRAAKREREEPQEEKPPAPAGGKRSRPARREAAQEQPLLLNAR 245

Query: 265 ----NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        K  A +AG+    S H +R   AT   + GA    +    G  ++  
Sbjct: 246 GGRLTTRSIERLVKLYAERAGIAARVSPHALRHSFATHLLEMGADLRTVQELLGHASLST 305

Query: 319 AETYTK 324
            + YT 
Sbjct: 306 TQRYTH 311


>gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 334

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 86/301 (28%), Gaps = 44/301 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
           LI  Y          + N+  ++ +   ++ R   +    +       + +    R    
Sbjct: 16  LIDAYLAMMRAERGASANTVAAYAADLREMSRFLAERGETFAACARADLEAFFSDRAEAG 75

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA + L+ ++    + V ++    +P   ++  K +       T  ++        
Sbjct: 76  LLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPMTLTIAEVDLLLDAAH 135

Query: 188 --------------EGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTI 232
                            +     E L  +GLR S+         L +        K G  
Sbjct: 136 QAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFLGDRKMLTVKGKGGRE 195

Query: 233 ITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMNATQFSIWF 273
             + L      +L                         K  F    +   +   +F+   
Sbjct: 196 RIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSWGEDGHLTRQKFAQDL 255

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329
           KA   + G++    S H +R   AT   D G     L    G   +   + YT    DR+
Sbjct: 256 KALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRL 315

Query: 330 R 330
           R
Sbjct: 316 R 316


>gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1]
 gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
 gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1]
 gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33]
          Length = 308

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 86/293 (29%), Gaps = 35/293 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITT 116
           L     E+ KS      L+ N+ I++E    Q ++               G+     + +
Sbjct: 8   LAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLRS 67

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  +       +  + L  +R L +   ++  V      ++  P++     +P T 
Sbjct: 68  FLANRRND--GAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTA 125

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
           +D +       Q        ++       L   GLR S++       L +        T 
Sbjct: 126 DDARRVVSADGQMAEEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMTITG 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA 280
           K      V L     K +A                F       ++A       +      
Sbjct: 186 KGSKTRLVPLLPAVHKAVAQYRALCPFDLSAGQPLFRGAKGGPLHAAIIQREMQKLRAGL 245

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 246 GLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYT-GVDTQRL 297


>gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           86-028NP]
 gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
 gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC
 gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP]
 gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047]
          Length = 295

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQIQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 385

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 110/357 (30%), Gaps = 53/357 (14%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SA 82
           Y   G  RR+            A+  A      K     SP       K  I ++     
Sbjct: 20  YDNTGKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHT 77

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137
               L+VN+R  + S  +  +I   G++  + I+   +++        +   P++  ++L
Sbjct: 78  TSLKLSVNTRNDYLSRINTNLIPLLGNYKIKDISIDVVQNFYNTLINEKHLKPTTVKKYL 137

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +    K+A  ++ +   P   +++ K +   I  W +E++  F + + + +       
Sbjct: 138 DILSSCLKYAQSKDLIYKLPTSYIKKVKIQKPKIEYWNQEEVNFFLN-YIKNTYLYTPIF 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPD 239
             + +GLR  + C      +      I                        +  ++ +P 
Sbjct: 197 IDILTGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLLLADLKTSSSHRSITIPK 256

Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------TKAGVNK 284
             +  L            E   ++    K      S+ F  K            KA    
Sbjct: 257 ILIDYLKELKANRQATNTEYVVLDRQDFKYIPRSLSMNFTKKVAKYKKSIDDFKKANEEV 316

Query: 285 ----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                     S HG+R   AT+    G     +    G   +     TYT   D ++
Sbjct: 317 PHGYMQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 373


>gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
 gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST196]
          Length = 378

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 52/378 (13%)

Query: 15  RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R     +    G     G+R +       T   A  +A T  T   E       K  T
Sbjct: 6   RKRGNTWSFTIDIGINPTTGKRQQKSKSGFRTKKEAQHAAATMITEI-EKGIYFDDKQLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +  +  K      L      S+E         I+        + I    I+S     
Sbjct: 65  VLDVWEK-LKPLRKAELK---ITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAEL 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K       +       +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F 
Sbjct: 121 KEKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221
            +  E   +  + F   +Y+G+R  +      + +  +                      
Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAT 240

Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                      S                 F +           F  N     ++      
Sbjct: 241 KTKSSNRSISISSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHR 300

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +      KAGV +   H +R   AT+   AG     +    G  ++    + Y+      
Sbjct: 301 FLNDHYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359

Query: 330 RLGIKNSRRISSVVDSDD 347
            +  + +    S++ S++
Sbjct: 360 -MQQQAAENFESIIKSNE 376


>gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CFN 42]
          Length = 383

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D +                       + +  +  
Sbjct: 75  VESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGF 134

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
            PSS  + L +MR  +K+   +     +P   ++ PK+              R  ++   
Sbjct: 135 KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 194

Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
           +       +  + R+    E L  +G+R S+      + L       +   K      V 
Sbjct: 195 EADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 254

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282
           L    +  L               + + +                 F+   K  A +AG+
Sbjct: 255 LSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 314

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 315 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 364


>gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
 gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100]
          Length = 294

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 23/292 (7%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR-----SGV 123
           L   I +Y K   +  S +  +   +     Q    +      + I+   +      +  
Sbjct: 7   LSENIDKYLKYMTFIKSASPLTIKHYSLDLMQAFNYEDPSVKAKSISESELLSTARAAFN 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    + +S  +   +++  F WA  +     +  + +  PK   +     + ++     
Sbjct: 67  QWAHLSLASRNRKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHFVSVDEALSVL 126

Query: 184 SFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
             +   ++     ++ F  L   GLR S++C      +Q +   ++ +        V LP
Sbjct: 127 KSFDSETKIPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVLRVKGKGSKERVVALP 186

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
              +++L               ++ +N+       +    +AG+      H +R   AT 
Sbjct: 187 SLTVEVLLKWKKESSFDEYVFGEKPLNSRTAYEMVRQSGIRAGLLKPLHPHALRHSFATH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              +GA    L    G +++   E YT              +++  +++  P
Sbjct: 247 LLSSGANLRTLQELLGHESLQATEKYTHL---------GIDQLARTMENLHP 289


>gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
 gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32]
          Length = 310

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 30/282 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             +I+ Y          A N+  S+     +        G      +T+ H+ +   + +
Sbjct: 9   ADVIAAYLDHLVVERGTARNTLDSYARDLRRYAAHLDGLGVAKIADVTSAHVTAFGAALR 68

Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      SSA + L ++R L K+A  +     NP   V  P       +    +D+
Sbjct: 69  EGDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALPVDDV 128

Query: 180 QQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
            +             + R   E L  +G R S++    V  +     ++    K G    
Sbjct: 129 LRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGKGGKQRL 188

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVN 283
           V +    +  L    +        + +            +++        K  A +AG+ 
Sbjct: 189 VPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTAGRAGIT 248

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 249 AVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290


>gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 306

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 25/279 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT 129
           I  +  +       + N+  ++ +   Q      +        ++T   + + V   +  
Sbjct: 5   IERFLAALGRDRGFSPNTVSAYRNDLSQFCHFLCEQHVLQSWAELTGTILTNYVLYLRER 64

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
               ++  + + +++    + V    +  +P   +  PK      R  T E +     Q 
Sbjct: 65  GYANATVARKVAAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQVEALLAQP 124

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
            +    E  + +   E L  SG+R S+     V  L      ++   K      V L   
Sbjct: 125 ARERTPEALRDKAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNKPERQRWVPLSSS 184

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
            +  L         F          F+N+   ++    F +  K+ A  A + + + H +
Sbjct: 185 AIAALDEYLQLGRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAEAAELGDITPHTL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           R   A  +   G    E+    G  ++   + Y + A +
Sbjct: 245 RHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283


>gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 303

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 17/262 (6%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +     + ++N+++++        R         +  + +R         +K  PSS   
Sbjct: 21  EDMQVRNFSLNTQLAYLQQVSLFARYFSKSP-DLLGREDVRIYQVYLANEKKLAPSSIHT 79

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++++R L+K  + +++V        ++P    +     + +++Q F        +    
Sbjct: 80  AISALRFLYKVTLERDWVPEEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDPKHHAI 135

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S++ +     + +    ++    K      V L    +++L      + 
Sbjct: 136 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWKMRR 195

Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                       Q +               ++     + H +R   A    +AGA    +
Sbjct: 196 PKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 255

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G +++     Y + A   
Sbjct: 256 QLLLGHRSLATTAHYLRIATNK 277


>gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
 gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53]
          Length = 306

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 30/288 (10%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VES 125
              +  + ++       A N+++++                   ++T   I S      +
Sbjct: 2   ARWVQTFLQAQAAELDAATNTQLAYARDLQGFAEWLASRGLHFMQVTQDQIESYLIDCAA 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + L++++ LF++A  + + A NP L ++ P R     +     ++ +    
Sbjct: 62  DGLAKSTRARRLSAIKQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLDLAEVDRLLDA 121

Query: 186 WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------I 224
                +  L      E L  +G+R S+     V   + +                     
Sbjct: 122 ARASPRDGLRNGCLMELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKERLVPLSPP 181

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                   +        +   A  P  K  F  +     +    F    K  A  AG+  
Sbjct: 182 ARAAMAAWLAARDAAQEVAQKAGKPASKFLFPSHGKAGHLTRHAFFGLIKGFAVTAGLSP 241

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + H +R   AT     GA    +    G   +   E YT   D+ 
Sbjct: 242 ERVTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQR 289


>gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175]
 gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183]
 gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175]
          Length = 306

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
              Y  +     L+ ++  ++    ++      +     +  +   + + + +  +  +P
Sbjct: 19  FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLAKLHRKGLSP 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  + +NP   +  PK+     +    + +           
Sbjct: 77  RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q ++  ++   K      V +    +  L 
Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  V    H +R   AT  
Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +A A    +    G   +   + YT   D   L 
Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290


>gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
 gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola
           LSR1]
          Length = 252

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 18/234 (7%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +   +      +  +S+ + L++++  F++  R++    +P   +  PK      + 
Sbjct: 7   LDLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKD 66

Query: 174 WTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +++ ++   +  +       + +   E L  +GLR S+     +  +      ++    
Sbjct: 67  LSEKQVEALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLRVIGK 126

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKAT 278
                 V L +  +  +         +          F +N  QKM    F    K  A 
Sbjct: 127 GNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIKHYAI 186

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A ++    S H +R   AT   + GA    +    G   +   + YT  A   
Sbjct: 187 LANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATER 240


>gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 319

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 30/282 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV---ESR 126
           I  +         L+  +  ++ S        +  +    D   I+   I S +      
Sbjct: 22  IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYDERKIKDIATISQLDIESYIRTLNEL 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
                +  + L S+    ++ +    +  +    V+ PK+        + E++ +     
Sbjct: 82  GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                  +   +     EFL  +G R S++     + +  N   +K T K      V + 
Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201

Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              ++ L                    T F+N     ++             +A ++K  
Sbjct: 202 GCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPL 261

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303


>gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 351

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/338 (10%), Positives = 93/338 (27%), Gaps = 44/338 (13%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
           ++          A    L+      +Y      +   +K  +  + +     +L  N+  
Sbjct: 3   KVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTR---VKQYLDFWMEEYVKLNLKYNTYE 59

Query: 94  SFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVR 149
           ++       I    G      ++   +++ + +      S        + ++     AV 
Sbjct: 60  NYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKKGYSKKTMTITHSVLKNALNMAVY 119

Query: 150 QEYVAINPCLSVERPKRKTEGI------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +     +   +  +           +  + ED         EG    +      Y+G
Sbjct: 120 PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLEDFDHMLEITPEGHPFYIPLNIGFYTG 179

Query: 204 LRCSDSCRAGVQHLQNN----------------IFSIKTQKTGTIITVELPDGFMKLLAM 247
           +R  + C      +  +                      + + +  T+ +    + +L  
Sbjct: 180 MRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWVYGTPKTSSSNRTIFIGQTLLAILKK 239

Query: 248 TPIGKETFFINNDKQKM--------------NATQFSIWFKAKATKAGVNKSAHGVRKFS 293
               +    +   K  +                +      +  +    ++ + H +R   
Sbjct: 240 HKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSVVKWNTRRISNALSLSFNFHSLRHTH 299

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           AT+  + GA   E+    G   +     TY+   D++R
Sbjct: 300 ATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMR 337


>gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
 gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM
           17241]
          Length = 526

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 108/386 (27%), Gaps = 45/386 (11%)

Query: 1   MTPSLRLPPFVTKERTRH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M    +      ++R      G+++  + +    R +             +  L  +   
Sbjct: 1   MGKRRKKGEGSVRQRNDGRWEGRVVIGYDEKGLPRTKNVLAKTKRECQEKLKQLRETMTG 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITT 116
            +      +        +  + ++     +   ++ ++E   +  II + G     ++  
Sbjct: 61  SKTEK--VRPEMPFGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQ 118

Query: 117 KHIRSGVESRKHTPSSAIQ--------------FLTSMRVLFKWAVRQEYVAINPCLSVE 162
           K ++      K                         + R   + AV++  +  NP +  +
Sbjct: 119 KDLQQFYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAVGCK 178

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P ++   ++   +E++Q+F           L F   L +GLR  +        L     
Sbjct: 179 LPPKRGREMQVLGREELQRFLIQAQAEGYFEL-FLLDLCTGLRRGELLALQWDDLDFRTG 237

Query: 223 SIKTQKTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQ 262
           ++   K    +   L                                          +  
Sbjct: 238 ALTVNKQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSPVKEDV 297

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            M         +    +AG  +   H +R   AT+S + G     L A  G  +     +
Sbjct: 298 PMTPGAVRRRLQIILERAGCKRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLD 357

Query: 321 TYTKGADRIRLGIKNSRRISSVVDSD 346
            YT       +  + + +I   + ++
Sbjct: 358 IYTHVTGD--MQSEAAAKIDRGLGNE 381


>gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655]
 gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655]
          Length = 295

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR---SGVESR 126
            ++ Y         ++ ++  +++   D  I+     D     ++T   +R   +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTLTNYQHQLDATIKILAQQDIYAWAQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 71/265 (26%), Gaps = 19/265 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
              +  YR+   + +         +     +    G     +IT   +     +RK TP 
Sbjct: 3   DHYLEIYRQQKSFHNFK-------KQIVQTLTEAFGSTRLSQITYLDLEKHRNTRKATPT 55

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   +   + +  ++ +   AV    +   P    ++   K          + +  
Sbjct: 56  WRGETRSDARVNREMAVLKHMLNKAVEWGMLEGTPFKKGQKLMFKENNHSLRFLSEAEIE 115

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R   E  L +G+R  +      + + + +  +   K+G    + +    +
Sbjct: 116 ALLAVCPPHLRPIVETALLTGMRKEELLSLKWEQINHGLIHLIRTKSGNPRHIPISGRLV 175

Query: 243 KLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
           ++        +                     F     KAG+     H +R   A+    
Sbjct: 176 EIFQQLRHQNQLKSPYVFCDGEGRRFNSVKRSFATACRKAGIENFRFHDLRHTFASHLIM 235

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            GA    +    G   +     Y  
Sbjct: 236 RGAGLKTVQELLGHSDIKMNMRYAH 260


>gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
 gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453]
          Length = 348

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 98/317 (30%), Gaps = 41/317 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----G 107
             +   RE I +      +L+  +    K     +L   +   +    +  I       G
Sbjct: 7   RKTAGAREPIANVALPSYSLQEAVEFVVKIKRANNLKERTISGYIQNMNYFIEWITERYG 66

Query: 108 DFDYRKITTKHIRSG---------------------VESRKHTPSSAIQFLTSMRVLFKW 146
           +   R++T   +R                             +P+S    +   +  F  
Sbjct: 67  EITIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVFKTFFAV 126

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYS 202
              +E +  NP ++V   ++  + I P +    +  M+          +  +    +L +
Sbjct: 127 LHEEEVIDRNPAVNVSLLRQDIDTIMPLSDEELRRFMKSPDQRQWAQWRDYVIMTLILDT 186

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM------TPIGK 252
           GLR  + C      +     SI       K      + L     +LL             
Sbjct: 187 GLRLGEICALEKMEIDFVKKSITLPASKNKNRKSRMLPLSTETARLLKQLIAETERNFDT 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMAT 310
              F  N  ++++       F   A KA  G N S H +R   AT++A+ G +   L   
Sbjct: 247 TYVFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNVSPHVLRHNFATMAAENGMSVFHLQKL 306

Query: 311 YGWKTVDQAETYTKGAD 327
            G   +     Y + ++
Sbjct: 307 MGHADIATTRKYVQISE 323


>gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           PittEE]
 gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC
 gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021]
 gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE]
 gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           7P49H1]
 gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R2846]
          Length = 295

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b]
          Length = 508

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 35/322 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLIS--EYRKSAHW-----------GSLAVN 90
             A  +    +          +     +  L +   +  S                L+ N
Sbjct: 177 ARAVHACAADTAGGDAGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRN 236

Query: 91  SRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           +  ++        +         +                    +S+ + L+  R  + W
Sbjct: 237 TLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGW 296

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
           AVR+   A++P L +   K+        ++  ++   +     +    + R   E +  S
Sbjct: 297 AVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYAS 356

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF------ 255
           GLR S+        +  N   ++          V   +     +                
Sbjct: 357 GLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARA 416

Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
               F+      M   QF    K  A +A V  + S H +R   AT   + GA    +  
Sbjct: 417 ADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQL 476

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   + YT  A R RL
Sbjct: 477 LLGHSDISTTQIYTHVA-RERL 497


>gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
          Length = 298

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH- 128
           I ++   A +  + ++N+  S +    Q+     + +      KIT   +R  + + +  
Sbjct: 12  IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 71

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 72  EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 131

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +     G + RL  E L  SG+  ++    G Q    +  ++          V       
Sbjct: 132 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 191

Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +        K+  + +              +++           A +AG+ +  S +  R
Sbjct: 192 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G + + L    G  T++  + Y
Sbjct: 252 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283


>gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 294

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH- 128
           I ++   A +  + ++N+  S +    Q+     + +      KIT   +R  + + +  
Sbjct: 8   IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 67

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+S+R  FK+ ++   +  NP   +  P  + E     T E++ + +   
Sbjct: 68  EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 127

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +     G + RL  E L  SG+  ++    G Q    +  ++          V       
Sbjct: 128 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 187

Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +        K+  + +              +++           A +AG+ +  S +  R
Sbjct: 188 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G + + L    G  T++  + Y
Sbjct: 248 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279


>gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
 gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3]
          Length = 322

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT  H++  +    +    P++    +++
Sbjct: 38  RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK      Y+  NP +   + +     I       +++           G +   A
Sbjct: 98  LKSVFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCA 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +     +  +  +I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                    T AG+ K    S H +R   AT     
Sbjct: 218 SREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           ATCC 13124]
 gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 450

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 50/303 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114
           Y ++      +VN+   +        +                         GD   + I
Sbjct: 142 YLENV--KGKSVNTIKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           T   I + +      R ++  +  + + +++  FK+   + + +  NP + +E PK    
Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259

Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                T +      +   + +    +        L  G+R S+ C   ++ ++ +  +I 
Sbjct: 260 HPVYLTLDQSITVLNSMDKENKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275
            +      TV L +  +  +      +             F+++  + +N     I  K 
Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330
               AG      + H +R  +AT+    G      L    G + +   + YT   D  +R
Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438

Query: 331 LGI 333
             +
Sbjct: 439 EAV 441


>gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102]
 gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102]
          Length = 298

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130
           +  Y K+      + ++  ++     +++R   D     + T +   + ++         
Sbjct: 11  LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAALKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L++ R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               + +  FE +  SGLR S+         + +  +     K G    V L    +  L
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVAKSIAAL 190

Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                      G++  F N +  ++   Q     +A A + G   + S H +R   AT  
Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             A      +    G   +   + YTK
Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 344

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 106/327 (32%), Gaps = 16/327 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P  TK ++  GK          +R R+ +         Y  ++          ++P+   
Sbjct: 5   PHPTKSKSEPGKWWVIDIGRGNQRERITFNGSYEEAWRYERSIRQQPDHLVEGSAPK--- 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--- 124
             +K +++ + +     + ++N+         + II   G+F  +++T            
Sbjct: 62  --IKDVVTLFLEWYRTEN-SINTVNDMRFCLDNHIIPWFGNFQPKQLTIALFNKFKADLL 118

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R   P +  + ++ +  L KWA    Y            K+KT           Q    
Sbjct: 119 ERGLAPVTINKNMSYLSSLLKWASEHGYCQPLAFTIPRFSKKKTTAEPVQPLTRRQLDAL 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +     + RL F  +   GLR  ++    V+ +     +I+    G+   +         
Sbjct: 179 YECLDPEYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFLSVRFE 238

Query: 245 LAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299
             +  +  E                          A KAG+++    H +R    +++A+
Sbjct: 239 EELNKVLSERLEGFLVVNPATGKPYYSIRKVLTRAAKKAGLSRQVYHHLLRHTFGSLAAE 298

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKG 325
           AG   + L    G   ++   + YT  
Sbjct: 299 AGMNPYALQRIMGHSNIETTNKIYTHV 325


>gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73]
 gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans]
          Length = 324

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 96/290 (33%), Gaps = 31/290 (10%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              I ++  +A     LA  S  S+    +   R       G     +    +  +    
Sbjct: 25  AAAIQQFLDAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGADRQALFNYLAWRTE 84

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +T  S  ++L+S+R  F   +R+     +P   +E P+      +   +  +    + 
Sbjct: 85  LGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQIDALLAA 144

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                  G + R   E +  +GLR S+  +     +      ++          V L + 
Sbjct: 145 PDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKERLVPLGEE 204

Query: 241 FMKLLAMTPIGKE----------------TFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
               L                          FI+  ++ ++  QF +  K  AT AG++ 
Sbjct: 205 SQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYATLAGIDP 264

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              S HG+R   AT   + GA    L    G  ++   + YT  A R  L
Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVA-REHL 313


>gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42]
          Length = 317

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D +                       + +  +  
Sbjct: 9   VESFLEMMSAERGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
            PSS  + L +MR  +K+   +     +P   ++ PK+              R  ++   
Sbjct: 69  KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQT 128

Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
           +       +  + R+    E L  +G+R S+      + L       +   K      V 
Sbjct: 129 EADDPAPGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282
           L    +  L               + + +                 F+   K  A +AG+
Sbjct: 189 LSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863]
 gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863]
          Length = 356

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 97/335 (28%), Gaps = 65/335 (19%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---------------------------- 108
           +  S     S + ++  S+     Q                                   
Sbjct: 20  FLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDFAAQQEEP 79

Query: 109 ---------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                         +T +   + ++ ++ +  +  + L+ +R  +K+ VR + V  NP  
Sbjct: 80  VRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTNPVA 139

Query: 160 SVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            V  PK +        +E++     Q  +    G + R   E L  +GLR  +       
Sbjct: 140 GVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVALNRG 199

Query: 216 HLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------------------- 255
            +  +  + I   K      V +    ++ L                             
Sbjct: 200 DIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAKQPL 259

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
           F+N    +++            ++  +++  S H +R   AT   + GA    +    G 
Sbjct: 260 FLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGH 319

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            ++   + YT    + RL  +  R       +  P
Sbjct: 320 ASLSTTQIYTHVTTQ-RLRTEYLRAHPRQRRAAPP 353


>gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 410

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 106/350 (30%), Gaps = 26/350 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGSTPKREYINSPRKKPTT 70
           +    G + Y  ++     I      +     F  A    L     ++  +   ++    
Sbjct: 61  KTDDKGNVSYKPKRNENGVIICKSDLDKETMLFADAIRRKLQKEYDEQILLGDNQQLKQ- 119

Query: 71  LKWLISE----Y---RKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSG 122
            K L+ E    Y          + +   RI+++   + +   SG    + +I  K     
Sbjct: 120 -KELLDEDFVSYSEELLKKRHKNSSDAIRINWKRVIELLKLFSGGRVKFAQIDMKFSEDF 178

Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  P           +++  + +  + + K A    Y   +    ++    +    
Sbjct: 179 KNFLLSAPCGGNKKGTISVNTSATYFSIFKAILKQAFIDGYFLSDLSGKIKGIADRESRR 238

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              ++E++        +    R A  F   +GLR SD  R   + +  +   I+   T  
Sbjct: 239 EYLSEEELNILAKTPCDNDILRRASLFSALTGLRLSDIQRLKWKEIIEDNDKIELHFTQK 298

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      K        +        +   +    S   K   TKAG++K  + H  
Sbjct: 299 KTKGVEYKPISKQALELCGERRDLEDLVFENLPDPAWISRPLKKWITKAGIHKNITFHCF 358

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R   AT+    G   + +    G   V   + Y K  D+ ++      ++
Sbjct: 359 RHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIKAAEVIKL 408


>gi|310657614|ref|YP_003935335.1| phage integrase [Clostridium sticklandii DSM 519]
 gi|308824392|emb|CBH20430.1| Phage integrase [Clostridium sticklandii]
          Length = 376

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 109/368 (29%), Gaps = 43/368 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            K+ +++G     F   + +      +            +                    
Sbjct: 4   YKDESKNGTWFCKFTYTNWKGEKINKKKRGFATKKLAQEWEQEFLNE--------QSGTL 55

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T K     Y++      +  ++  + E   + +I+   G     +I +  I       
Sbjct: 56  EMTFKEFFEVYKRDKKPR-IREHTWKTKEYIVNTKILPYFGKIKMNEIKSITIIHWQNEL 114

Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTK 176
                    K++P+        +  L   A +   +  N    V     K    +  WT+
Sbjct: 115 MEKRDDKGQKYSPTYLRTIHAQLSSLLNHACKYYNLKTNAARDVGSMGEKEANEMLFWTQ 174

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           E+ ++F S   +  Q   AFE L + GLR  +      +        +K  ++       
Sbjct: 175 EEYEKFISAIKDKPQSFYAFEILYWCGLRIGELFALTKEKFDFENNIVKVDQSVQKLNGE 234

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                        T+ +P+   + +     G       +    ++ +           KA
Sbjct: 235 IVITPPKTKKSIRTIVMPEFLSREIQEYLSGFYKLKDKDLIFPISKSYLHHEMDRGCKKA 294

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            V +   H +R    ++  + G +A  +    G +++D    Y       +     ++ +
Sbjct: 295 SVKRIRVHDLRHSHVSLLIELGYSAIAIADRVGHESIDITYRYAHLFPSKQ--SDMAKSL 352

Query: 340 SSVVDSDD 347
             + D+ +
Sbjct: 353 MQLRDNSN 360


>gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
 gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641]
          Length = 315

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 93/300 (31%), Gaps = 35/300 (11%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127
           L++ Y +        + ++  ++ +     +R +   +   +   H         +++ +
Sbjct: 15  LVARYLEELTSTGRASAHTIRNYGNDLADWLRFAERSNINALEPSHRDIRLYLVDLDAAR 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
           +  ++  + L+S+R  F+W         NP  +V   K            DM +      
Sbjct: 75  YAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPHRIPPSDMVRILRVNG 134

Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
                           + +   EFL   G R S++    V  +  +  + +   K     
Sbjct: 135 PRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDLDRGTARLFGKGSKER 194

Query: 234 TVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V L                  L         FF++     MN       FK    +AGV
Sbjct: 195 VVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTDAIRKMFKTTLIQAGV 254

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
               + H +R   A+   + GA    +    G  ++   + YT    A   ++  +   R
Sbjct: 255 RAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHPR 314


>gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 337

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 86/312 (27%), Gaps = 15/312 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G     +R    R  R+               +     + ++     K+  T   +   
Sbjct: 8   NGTWGIDYRYKSKRYKRV-VAITRKLALDIERKILTDIKEGKFFPDLDKQDVTFAEIAER 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135
           Y       +    +       FD I+ + G      ITT+ I+        + +PS+A +
Sbjct: 67  YWSLHGRKTRGAQTFK---YTFDIILSRFGHMKVADITTEDIQKFYNDTWERTSPSTANR 123

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             +  R +         +       +   +++    R              +  ++ +  
Sbjct: 124 HFSLFRAIIN-KALNLKLYKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTAENRLKPI 182

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
             F + +G R  +      + +      I+    K+G    + L +    +L       +
Sbjct: 183 IAFAVLTGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLANDLRPILLAMHTNPQ 242

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
               N              F     K G      H  R   A++         +L    G
Sbjct: 243 DKVFNI-----TVPALKYSFNKLLKKLGFEGYCFHTCRHTFASLYMQNDGNITDLQRILG 297

Query: 313 WKTVDQAETYTK 324
             T++    Y+ 
Sbjct: 298 HATIELTMRYSH 309


>gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
 gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21]
          Length = 295

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +Q+  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQRLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    + G+  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNNHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
 gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14]
          Length = 309

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 91/276 (32%), Gaps = 23/276 (8%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS---GVESRKHTP 130
           EY +S     L+++++ +++     +          +   +    +R             
Sbjct: 21  EYLRSE--KGLSLHTQRNYQQQLQAMAGHLHHLGVSEWQHVDAAWVRQLASKGMRDGMKA 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS    L+S+R  F + + +  ++ NP   V  P+++    +    ++M Q         
Sbjct: 79  SSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDNDP 138

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              + R   E +  +GLR ++     ++ L  +   I+          V       + + 
Sbjct: 139 LSIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVPFSGQAKEWVG 198

Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                +++         FI+    +++             K  V  + S H +R   AT 
Sbjct: 199 KWLKVRDSLLKGEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHISPHKLRHSFATH 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++      +    G + +   + YT   D   L 
Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLA 293


>gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 398

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 105/379 (27%), Gaps = 62/379 (16%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  Y F      G+R ++      T   A  +             +      +  
Sbjct: 7   RKRGDKWQYQFEAATIDGKRKQISKSGFRTKKEALEAGTKALAEYNNCGLTFVPSEISFN 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + K     +L   +  ++       I  K G +  + +T   ++S +  + +   
Sbjct: 67  DYLDYWIKEYAQVNLKETTVDNYNKKIKLYIKPKLGIYKLKSLTPAILQSFINEKFNEGF 126

Query: 132 SAIQFL---TSMRVLFKWAVRQ-EYVAINPCLSVERP--------KRKTEGIRPWTKEDM 179
           S    L     +     +AV    Y+  +P  +V  P          + +     ++E M
Sbjct: 127 SRNTLLVLKGILSGSLNYAVEPLGYIKFSPMAAVRLPLKRAVPNTPTRKKEKYIVSEEQM 186

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSI 224
           +     +  G    L  +     GLR  ++       +                N  +  
Sbjct: 187 EGIFERFPFGHSSYLPLQLAYRCGLRLGEAFAITWDDVDLKNQKLDINKQVQYKNKQWYF 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------- 259
              K  +   ++L +  + +L      +    I                           
Sbjct: 247 TPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKKQIKETDGTEIHL 306

Query: 260 -----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
                +   +        F     K G+     H +R   AT+   +GA    +    G 
Sbjct: 307 INIRENGTYIQPRVMQHCFHIIHHKLGIKELDYHSLRHTHATMLLSSGANIKAVQERLGH 366

Query: 314 KTVDQA-ETYTKGADRIRL 331
           K +D   + YT   D +R 
Sbjct: 367 KKLDMTLDVYTHVTDEMRR 385


>gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
 gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162]
          Length = 334

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 34/285 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             ++ E++ S      +  +  ++ S     +   G    R++T K + +    R     
Sbjct: 20  DEILEEFKVSLEASGASSETVKAYLSAVKDFLSFIGGKPLREVTLKDVVAWRNERLRNGF 79

Query: 127 -------KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +      + + T  ++  F+W      V+              E I       
Sbjct: 80  PNRKMEGREKWQVTLHYYTMFLKRFFEWLGLNIGVSSVKKPPARINALSDEEIEKL---- 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVE 236
                   +     +L    L+ +GLR  +     V+ +  +   I+    K G    V 
Sbjct: 136 -----MNAARTPLDKLILRLLVDTGLRSRELLGLRVEDVDFHSRVIRVSSAKYGKERYVT 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                 ++L            +     +  +      K  A +AG+       H +R   
Sbjct: 191 ATGETFEMLRSWIALNGLKPGDRLFN-LTYSGLYKKLKRLAARAGIPPEKIRPHVLRHTF 249

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AT +   G +   L    G   +   + Y        L I++ ++
Sbjct: 250 ATRALRRGLSLPSLQRLLGHADIKTTQVYLH------LSIEDLKK 288


>gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
 gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685]
          Length = 329

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK 127
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 34  LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPPNCTRGDFVQALRRLS 93

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+S R    W V++  +  +P   ++ PK+     +   +E + Q   
Sbjct: 94  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 153

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
              +       +    FE +  SGLR S+        +  +   ++          V L 
Sbjct: 154 LPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 213

Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
              ++ L      ++T       F   +  +++  Q     ++ A + G   + S H +R
Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 273

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A+    +      +    G  ++   + YTK      L   +  R+
Sbjct: 274 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 316


>gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 102/321 (31%), Gaps = 41/321 (12%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITT 116
           KPT    L++EY  S      +++ N+  S+   F  +++               + I  
Sbjct: 2   KPTDFSKLLTEYLTSYLPSLKNVSKNTISSYCDTFRLLLKYCRDVHNLSIEKISMKDIDA 61

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +   +    E R    S+  Q L ++R  F++   ++   +  C  V     K + + 
Sbjct: 62  DLVSQFMLWLEEERHCGISTRNQRLMAIRSFFRYVQGEQPQNLLNCQKVLNIPPKKKSLP 121

Query: 173 PWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             T   +++ K       +   EG +       L  +G R  +     V++++    +  
Sbjct: 122 VVTYLTVEEMKLLLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPAKV 181

Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFK 274
               K      V L    ++LL    I              F N    K+  +  S    
Sbjct: 182 HLTGKGRKSREVPLLPRTVQLLERYMIEHRLLAPEKQDHPLFCNRHNSKLTRSGISYILN 241

Query: 275 AKATKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A  A         + S H +R   A     AG     +    G  +VD  + Y     
Sbjct: 242 KYAELASSQSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANT 301

Query: 328 RIRLGIKNSRRISSVVDSDDP 348
           +++       ++      + P
Sbjct: 302 QMKRA--ALEKLGDSPAPEFP 320


>gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10]
 gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10]
          Length = 311

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 96/295 (32%), Gaps = 24/295 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---I 134
           +         A +++ ++       +         ++T   +   +   + + + A    
Sbjct: 17  FLSYMKDREYAKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGARYRN 76

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
           +  +++R+ +K  +R +  + NP + +E+ K +      + ++ +        EG    +
Sbjct: 77  RCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGRYRIR 136

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                  + Y+GLR S+  +  V  +     SI     G+          +  L    + 
Sbjct: 137 DVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAELNKLLQMYLE 196

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGVNKSAHGVRKFSA 294
           +     ++       +QF      +  +                 +G + SAH +R   A
Sbjct: 197 ERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLSAHKLRHSFA 256

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDDP 348
           T     GA    +    G + +   + YT   D      +   R    ++ S  P
Sbjct: 257 TELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAIPLLFSSKP 311


>gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12]
 gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 29/285 (10%)

Query: 75  ISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVES 125
           +  +         +  ++  +++      +      D         R+IT   +R+ + +
Sbjct: 14  LETWLTHLRALDDSPASTLSAYQRDVAGFLGFLARHDGGLASPARLRRITQSDMRAWMAA 73

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +       S  + L++++  F+W   ++       L+   PK + +  RP  ++   + 
Sbjct: 74  ERRRGLGARSLARALSAVKSFFRWVGERDGFEPTAVLAARSPKYQRKLPRPLAEDAALEM 133

Query: 183 KSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +            ++       L   GLR S++                  K      V
Sbjct: 134 IAQVELQAADSWIAARDVAVVTLLYGCGLRISEALGLTGAAAPLPEVLTIRGKGDKERIV 193

Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            +       +                 F      ++N    +   +    + G+    + 
Sbjct: 194 PVLPAARTAVDTYLRLSPHPLEKDGPLFRGKRGGQLNPRVIAKVMEQARMQLGLPSSATP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT    AG     +    G  ++   + YT   D  RL
Sbjct: 254 HAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT-AVDATRL 297


>gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 318

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 25/293 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131
           +  +      G   ++++ ++     Q +R   +    ++   H+ S +   +      S
Sbjct: 24  LEAFLIWMKDGGYTIHTQKNYMGDVKQFLRTLREKPLDQVKKIHVMSYLSKAREGGAGDS 83

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  +   ++   FK     E  + NP   +++ K +   +  +  E          EG  
Sbjct: 84  TRNRKHAAVNSFFKALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAVEGKY 143

Query: 190 -SQPRLAFEFLLYSGLRCS---------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++    F  ++Y GLR            S       +       +T      +   +  
Sbjct: 144 ANRNMAIFLLMVYMGLRVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLPVPEAVCDFVEH 203

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--------HGVRK 291
              + L      ++  F++   +++              +   +KS         H +R 
Sbjct: 204 ALEERLTPWRGKEDAMFVSQKGRRLAVRTIQQIATETFERFQQDKSIERREAYSSHKLRH 263

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             AT+    GA    +    G  ++     YT   +R +   K   ++   + 
Sbjct: 264 TFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREK--EKAMDKLDIQIP 314


>gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B]
 gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B]
          Length = 355

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 22/323 (6%)

Query: 21  IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKW 73
           +    R G  +    +L    + T   A   A             +     RK   T   
Sbjct: 13  VYLRHRNGSNKTAHTKLGTTLDLTLKEARTKARQLKAAIALGADPQADARQRKAVPTWNA 72

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             +E Y   A     A  +  +       ++  + G     +IT + ++      +    
Sbjct: 73  FFTESYLPHAKQ---AKRTWKNDADMHRLRLGPRFGATPINRITRQEVQQFHNELREDGL 129

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FW 186
            P++A   L  +R     AV    + +NP   V++   +    R  + E+ ++       
Sbjct: 130 APATADHHLKLLRHALNLAVDWGMLQVNPAAKVKQFNSENLVERYLSDEEFKRLMRVLRD 189

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
            E         +LL +G R  ++  A    +  +      +           V L D   
Sbjct: 190 HENRPMACIVLWLLATGARSGEAKAATWDDIARDQTVWTIRSEHSKSKKRRAVPLNDIAR 249

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
            +L        T       ++      S  ++    +A +     H +R   A++  ++G
Sbjct: 250 SVLQEIRASGCTSGHLFVGKRGPYKYLSKNWERICEEADLQGLRLHDLRHNYASMLVNSG 309

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
            + +E+    G         Y+ 
Sbjct: 310 HSLYEVQQALGHSDPKVTMRYSH 332


>gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 414

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 103/330 (31%), Gaps = 17/330 (5%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           ++ +       T                +         TT   +  +Y  ++       +
Sbjct: 65  KKAQRTGEGALTLAERREMENVRRAEDIKLKKEQEIASTTFNIIWEKYFLNSQHEKAYKS 124

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWA 147
                  Y   I    G+  + K+T  H+    +  +    +P S    L+ +R +F +A
Sbjct: 125 WDTERHLYKKWIQPFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYA 184

Query: 148 VRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLR 205
                   ++P   V+ P      IR  T  + +         SQ         L+ G R
Sbjct: 185 SDHGIFEGVDPVSLVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDIALIALHCGPR 244

Query: 206 CSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             +      Q +  +    + +  K   +  + +     K+L      + +  +  D+  
Sbjct: 245 AGEIFSLTWQDIDFSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSDDRSSALVFPDRNG 304

Query: 264 MNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWK 314
               + S  F+    + G NK           H +R   A+    AG   + +    G K
Sbjct: 305 GRRKKVSKAFERTIKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHK 364

Query: 315 TVDQAETYTKGA-DRIRLGIKNSRRISSVV 343
            + Q E Y   A D ++   +   +I+S  
Sbjct: 365 QISQTERYAHLAPDSLKQATEALNKINSHK 394


>gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 297

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 13/291 (4%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
              S   KP ++ WL+S Y +         + +  +     +  +++I          I 
Sbjct: 2   QKASEVAKPKSISWLVSSYLEYLEASVVAGTSSGKTLKKKRNLLNRLIEN--PDRVMLIP 59

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + +    +    TP+ A  F+ ++ V++ WA ++  V+ NP   +++   K +G  PW 
Sbjct: 60  QEKLIEMQDKMGSTPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWK 119

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTII 233
            +D+++F +    GS+  +A   LL++G R  D        + +   I +++ Q +    
Sbjct: 120 ADDVKKFFAKHKPGSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGS 179

Query: 234 TVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
           +         L   T                K   +    S  FK     A +   SAHG
Sbjct: 180 SEVSVPLLPALKTATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHG 239

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           VRK  A + A+ G + +E+MA  G      +E YT+  +R +L +    R+
Sbjct: 240 VRKGLAELLAEQGCSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERV 290


>gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
 gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36]
          Length = 353

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 88/328 (26%), Gaps = 22/328 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           RT+  ++  Y     G R R        F  A   A+          N+ R    TL   
Sbjct: 4   RTKKTRVYQYDIVVGGHRFR-GSCGTEDFEAA--KAVEADIRANAKRNAARGSDYTLSEA 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           +  Y      G  +  +  S        +   G     K+T   I       +     S+
Sbjct: 61  LGTYINDKIVGRPSEGTTKSQARVILSHMD--GKKRLSKLTDADITQYAAKHRATCANST 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  +    +   +  Y    P + ++  + K    R       +Q + F +   + 
Sbjct: 119 VNRHLQMLGRALRHMGK-VYKTEIPDIDLKAAETKEPRERVRELTTDEQTRLFAALPQEF 177

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
                F L +G R S       + +      I  +  G  + +   +G +  L       
Sbjct: 178 HPMVAFALMTGARISTITGLLWRDVDMPHREITFRLKGDELMIFPINGELAALLSALPKS 237

Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
                        +       +   +   F   ++     A ++    H +R   AT   
Sbjct: 238 NVMESRRYVFTRVDGHSAERIQIIASGGVFGTVWRKALLDAAIDNFRFHDLRHTFATRML 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
                   +    G   ++    Y    
Sbjct: 298 RKTQNISLVSKLLGHTNIETTSRYAHVL 325


>gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3]
          Length = 321

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 30/277 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128
           +         +AV++ +++E    Q      +  G          +    +R+ +  R+ 
Sbjct: 28  WLDHLTQTRRMAVHTVVAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRAYLAYRRT 87

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178
                 S  + + S+R  F +  R++ V +     V  PK      +  T         +
Sbjct: 88  QNINARSLSRNMASLRSFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIESALRIVRE 147

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVE 236
             Q ++     ++       L   G+R S++     +   +        T K G    + 
Sbjct: 148 DNQQETEPWIIARNTAILILLYGCGMRISEALALTPEKFSDPNIKSLPITGKGGKTRLIP 207

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287
           L       +           +NN           +         +      G+ ++   H
Sbjct: 208 LIPIAHTAIKNYLKCCPYPLVNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     G     +    G   +   + YT 
Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTH 304


>gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223]
 gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223]
          Length = 306

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
              Y  +     L+ ++  ++    ++      +     +  +   + + S +  +  +P
Sbjct: 19  FERYLSTE--RQLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLSKLHRKGLSP 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++++   ++ +R+  + +NP   +  PK+     +    + +           
Sbjct: 77  RSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDIEGTDP 136

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q ++  ++   K      V +    +  L 
Sbjct: 137 LSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLAIAALL 196

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  V    H +R   AT  
Sbjct: 197 NWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHSFATHM 256

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +A A    +    G   +   + YT   D   L 
Sbjct: 257 LEASADLRAVQELLGHANLATTQIYT-SLDFQHLA 290


>gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 281

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 93/272 (34%), Gaps = 23/272 (8%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESR 126
            I EY          + N+ IS++           +       +            +E  
Sbjct: 5   AIQEYITYLHDVKKTSYNTEISYKRDLKNAAAYLEEQRVSSFESATETNLYSYMLYLERE 64

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           K + ++  + + S+R  +++ +R+  +  +P   ++ P+ + +     T ++  +     
Sbjct: 65  KKSAATVSRSIASLRSFYQYLLREHKIDKDPSEHLKAPRVEKKVPEILTIDEADRLLAQP 124

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               ++G + R   + L  +G+R S+     ++ +  ++  I  ++      + +  G  
Sbjct: 125 DRKKNKGLRDRAMLQLLYCTGIRVSELVHMKMEDVNLDLGYITCRENSRERIIPMTQGTR 184

Query: 243 KLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +L                 E  F N    +M+   F    K  A  AG+ K  + H +R
Sbjct: 185 IILDEYLESARDSLLKGKESEYLFCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G   H +    G   V   + Y
Sbjct: 245 HSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMY 276


>gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
 gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 119/393 (30%), Gaps = 55/393 (13%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGS 54
           MT +   P  +   + + GK +Y F+         G+          T   A   AL   
Sbjct: 1   MTKNNSSP--IKSYQNKDGKTLYKFQVYLGVDELTGKAHSTTRRGYKTKKEA-ELALARI 57

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRK 113
             +       +K   T + +   +       ++  ++   +   + + I+   G +   K
Sbjct: 58  KLQVSEGTYKQKSTETYQEVYDLWITQYE-KTVEESTFVKTVGYFKNHILPSMGSYRIEK 116

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           IT    +            A    +  + +  +A+   ++  NP   VE   +K      
Sbjct: 117 ITIAICQKHYNEWASKVKKARTIKSYAKKVLDFAIVHGFIQTNPFTHVETKVKKAFTEST 176

Query: 174 WTKEDMQQFKS---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             + +    K                +    F  + Y+G+R S++       +      I
Sbjct: 177 EDENENFYTKEELISFLEKAKDHLNYKAYTLFRLIAYTGMRKSEALALTWNDVNFVENEI 236

Query: 225 KTQKTG----------------TIITVELPDGFMKLLAMTPIGKET-------------- 254
              K                     T++L +  + +L      ++               
Sbjct: 237 TINKAIGRGKQTQLYLKTTKTGKPRTIKLDETTLSILKEWNKLQKQQYIQLGINTLKKNQ 296

Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
             F N     +   Q   W  +   K  + K S HG+R    ++  +AGA+  E+    G
Sbjct: 297 LMFSNTKNDFIQPGQVQKWMYSVQNKYTLKKVSPHGLRHTHCSLLFEAGASIKEVQDRLG 356

Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
              V    + YT    + + G    ++  S ++
Sbjct: 357 HSDVKTTLDIYTHVTKKAKEG--AIQKFVSYLE 387


>gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22]
 gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22]
          Length = 376

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 25/306 (8%)

Query: 35  LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +     AY   SAL  + PK+    SP   P         Y ++      + ++ 
Sbjct: 61  LSGFFDRHVETAYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAV 148
            ++  YF +  +     + R I  + I + +     T           + S++  F    
Sbjct: 113 RAYTVYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYF---- 168

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +       C  V+R KR+       +KE+++          +    F  L  +GLR S+
Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263
                   +  +     ++  K        L    ++ L         +E  F     + 
Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  S   K  A +AG+ K    H +R   AT   + G     +    G   +   E 
Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348

Query: 322 YTKGAD 327
           Y   AD
Sbjct: 349 YVHIAD 354


>gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
 gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
              L+ +S  ++ +     +    D        T + +   +   +       S  + L+
Sbjct: 2   ARGLSEHSIAAYSTDIVGFLIFLNDHGAALEATTDETVLLYLMHLRSRGLASRSLARHLS 61

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194
           ++R  F +A  + +++ +P   +E PK         ++E++ +           G + R 
Sbjct: 62  ALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRLLDAPDTATPLGYRDRT 121

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             E L  +GLR S+     +         ++            +    M+ L+       
Sbjct: 122 MLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTPIHSLAMEFLSTYLSSIR 181

Query: 254 TFFINNDKQKM--------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
             F   D+                    K  A  A V    S H +R   AT   D GA 
Sbjct: 182 GAFGPKDQHVFLNRSGKGLTRQAVWKGIKRYALAAQVSTRISPHSLRHSFATHLLDGGAD 241

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333
              +    G   +   E YT       L +
Sbjct: 242 LRTVQMLLGHADISATEIYTHVQAGRLLAV 271


>gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624]
          Length = 322

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 90/300 (30%), Gaps = 44/300 (14%)

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122
           +   I   + +      L+ N+  ++        R   +                 + + 
Sbjct: 17  VDAFIDALWLEE----GLSRNTLAAYRRDLALYARWLAEPREGKASQTLDASGEPDLNAY 72

Query: 123 VESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +R      ++A + LT  +  F+WAVR+  +  +P L +   K+     +  ++  ++
Sbjct: 73  FAARHAQTRATTANRRLTVFKRYFRWAVRERRIQADPTLRLLSAKQPLRVPKTLSEAQVE 132

Query: 181 QFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
              +        G + R   E +  SGLR S+     + ++  N   ++          V
Sbjct: 133 ALLAAPDAATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERLV 192

Query: 236 ELPDGFMKLLAMTPIGKETF----------------------FINNDKQKMNATQFSIWF 273
              +     +                                  +   + M    F    
Sbjct: 193 PFGEVAADWMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSLV 252

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A  AGV    S H +R   AT   + GA    +    G   +     YT  A R RL
Sbjct: 253 KKYAVIAGVTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 311


>gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 315

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 75  ISEYRKSAHWGSLAVN-SRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128
           + ++ +       A   +  ++    D ++        G               +  R  
Sbjct: 19  VRQFLQMMAVERNAARPTLDAYGRDLDDLMATCKVTPQGLLGLSDGDLAGYFQDLSERGL 78

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFK 183
             SS  +  +++R  +++ V +     +P   +   K+  +  +  +++           
Sbjct: 79  ASSSLQRKRSAVRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALIAAADA 138

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFM 242
              ++  +     E    SG+R S+     +  +  +    I   K G    V L     
Sbjct: 139 IAPNQAVRLECLIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVERLVPLNPSAR 198

Query: 243 KLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
             +      + TF                 +  +   +        A  AG++    S H
Sbjct: 199 AAIKEYLDIRYTFLPAGDKANPYLFSSRGKEGHLTRRRVGQLLDQAAINAGIDPARVSPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
            +R   AT   + GA    +    G   +   + YT  A +R+R  ++    ++ 
Sbjct: 259 VLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHPLAK 313


>gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A str. ATCC 19397]
          Length = 387

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 109/384 (28%), Gaps = 59/384 (15%)

Query: 16  TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           T++GK  Y       R  +G+ IR  +   S       +         +   +   K   
Sbjct: 8   TKNGKQYYRVTASIGRDANGKLIRKEFYGASK--KEAENKRDEYLNGIKNGLNIDYKNII 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128
           L  L+  +        +  +S   +E  +   I+  +        + T  ++       +
Sbjct: 66  LGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYN 125

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKR----KTEGIRPWTKEDMQQ 181
              ++         +R  F +AV + Y+  NPC   +                  +   +
Sbjct: 126 NGKTSNVIKNLNKLLRTFFNYAVNEGYILKNPCSGSKIIIPGGKDMEVKEIEIFTDKEIK 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-- 239
                 EG++ +      L SGLR  +        +      IK  K+   + +   D  
Sbjct: 186 ALKKQLEGNRLKCLILLALGSGLRQGELLALRWDDIDFKTNEIKVTKSIKRVKIIENDGT 245

Query: 240 -----------------------------GFMKLLAMTPIGKETFFINNDK--------Q 262
                                           K L    I +      +          +
Sbjct: 246 GKRKTIEQSPKSIKSNRVVPIPSKLINALEEHKALQEKEIKEAGCSYVDKNLVFATKLGK 305

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            +        ++    +A +  K  H +R   AT   +       +    G K +   A+
Sbjct: 306 PIVVKNLFESYRRILIRAKIPHKKFHALRHTYATKLFEKDVQLKTVQKLLGHKNISITAD 365

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
           TYT    + +  I  + +++ + D
Sbjct: 366 TYTHVMPKEK--ISAADKLNDLFD 387


>gi|119898154|ref|YP_933367.1| phage integrase family site specific recombinase [Azoarcus sp.
           BH72]
 gi|119670567|emb|CAL94480.1| site-specific recombinase, phage integrase family [Azoarcus sp.
           BH72]
          Length = 358

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 26/339 (7%)

Query: 11  VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +TK + +HG       R          +        A   A    T  +   +    K  
Sbjct: 4   ITKRQGKHGTTYKVQIRLKGYPAETATFDR---LSDARTWAAQTETAIKAGKHFGVAKRR 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL  L  +Y ++      ++ S  +   +     +  G      ++   I    +     
Sbjct: 61  TLHELAEKYEQAVAD---SLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKR 117

Query: 130 P--------SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    ++  +++ ++  LF +AV++ ++V  NP   V +       +R  + ++  
Sbjct: 118 TTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSDQERA 177

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIIT 234
              +   E   P L  A    L +G R ++      Q +     +I       K G    
Sbjct: 178 ALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRV 237

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV-NKSAHGVR 290
           + L    + LL      ++               F+     +     +AG+ +   H +R
Sbjct: 238 LPLTGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLR 297

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +A+    AG  + E+    G KT+     Y+  +   
Sbjct: 298 HTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSPER 336


>gi|268611812|ref|ZP_06145539.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 366

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 110/356 (30%), Gaps = 42/356 (11%)

Query: 6   RLPPFVTKERTRH--GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +    + K +     G++   ++    ++ R  Y      +   M+ L           +
Sbjct: 3   KRGSNIYKRKDGRFEGRVHVGYKADGSKKYRSVYGKTLAEVKEKMADLYAV----RTEKN 58

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T++    ++  +A    +  +S  ++E+  +  I+   G      +TT  I   
Sbjct: 59  ISAIRLTVREAADQWLSAARLR-VKESSYANYENILNNHILPILGGEYISSLTTGRINDF 117

Query: 123 VESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +  +            +  +    +T  R + ++  R+  +        +      + + 
Sbjct: 118 IHYKLTNGRLKGQGGLSAKTVRDIMTVYRSVERYVYREYGIRETNFTMPKTESGNADVLN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              ++ ++ +     +  +  LA    L++GLR  + C    + +     ++  ++T   
Sbjct: 178 CEERKKLESYLIKNMD--RTNLAVLLCLFTGLRIGELCGLKWEDIDFEKNTLSVKRTVQR 235

Query: 233 --------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                TV +P   M LL         F I N  +          
Sbjct: 236 VSRNGKSQVIIGSPKSRTSIRTVPIPIFMMALLRKFRSIDSLFVITNLSKPTEPRTMQNR 295

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
           FKA     G+ N + H +R   AT+  + G     L    G          Y   +
Sbjct: 296 FKAILKLCGIRNVNFHSLRHTYATVCIEKGFDPKALSELLGHADASITLNRYVHSS 351


>gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 292

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 17/262 (6%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +     + ++N+++++        R         +  + +R         +K  PSS   
Sbjct: 10  EDMQVRNFSLNTQLAYLQQVSLFARYFSKSP-DLLGREDVRIYQVYLANEKKLAPSSIHT 68

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++++R L+K  + +++V        ++P    +     + +++Q F        +    
Sbjct: 69  AISALRFLYKVTLERDWVPEEVLPLPKKP---QKLPIILSPDEVQHFLG-CVLDPKHHAI 124

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S++ +     + +    ++    K      V L    +++L      + 
Sbjct: 125 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWKMRR 184

Query: 254 TFFINNDK----QKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                       Q +               ++     + H +R   A    +AGA    +
Sbjct: 185 PKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 244

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G +++     Y + A   
Sbjct: 245 QLLLGHRSLATTAHYLRIATNK 266


>gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83]
 gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83]
          Length = 292

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 85/262 (32%), Gaps = 18/262 (6%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +     + ++N++ S+        R  G      +  + IR+        +K  P+S   
Sbjct: 10  EDMQVRNFSLNTQHSYLQQVSLFARHFGKSP-DLLGREDIRTYQVYLANEKKLAPNSIHI 68

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++++R  F   + +++V     L    P++  +     + +++QQF        +    
Sbjct: 69  AISALRFFFSVTLERDWVPEEVLL----PRKPQKLPIILSPDEVQQFLG-CVLDLKHHAI 123

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S++       + +    ++    K      V L    +++L      + 
Sbjct: 124 LTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDYWRMRR 183

Query: 254 TFFI----NNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                   +     +               ++     + H +R   A    +AGA    +
Sbjct: 184 PKEWLFPGDRTGHPITRDAVGQACAKAHDLSRLSKPVTPHSLRHAFAVHLLEAGADVRTI 243

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G +++     Y + A   
Sbjct: 244 QLLLGHRSLATTAHYLRIATNK 265


>gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735]
 gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735]
          Length = 293

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           I ++     +  + +  +  ++        +   D      +  +    +R+ +E     
Sbjct: 3   IDKFLDYLRFECNRSELTVKNYGDDLRSFEKFFRDLKNPVSWESVDLDVVRNWMERMMDE 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               +S  + L+++R  +++A+ ++ V  +P   +  PK+     +   +++M +     
Sbjct: 63  GNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLERE 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
           + +   E  + R        +G+R S+      + +    +    T K      +   + 
Sbjct: 123 YWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGEE 182

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
               L      ++          F+ ++ Q+M+A+      K   +K      +S H +R
Sbjct: 183 LCTTLRDYMESRDREVGRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLKKRSPHVLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 243 HTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277


>gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
 gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703]
          Length = 298

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130
           +  Y K+      + ++  ++     +++R   D     + T +   + ++         
Sbjct: 11  LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  + L++ R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               + +  FE +  SGLR S+         + +  +     K G    V L    +  L
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVGKSIAAL 190

Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                      G++  F N +  ++   Q     +A A + G   + S H +R   AT  
Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             A      +    G   +   + YTK
Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 342

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 30/286 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSS 132
              Y  S      + ++R +++    Q      D        +   +R  +  +     +
Sbjct: 18  FDAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGA 75

Query: 133 AI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKS 184
               + L+++R L+++ VR+     NP  +V  PKR         +E+            
Sbjct: 76  VSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAAG 135

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243
                 + R   E L  SGLR S+     ++ L      ++   K      V       +
Sbjct: 136 EAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAE 195

Query: 244 LLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
            L     G                  F+N    ++ +   +         +G+ +    H
Sbjct: 196 ALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 256 VLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 300


>gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
 gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc
           kimchii IMSNU 11154]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 90/280 (32%), Gaps = 29/280 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            L   Y  S      +  +  ++ S  D+ I       G  ++R +    +R  +     
Sbjct: 7   QLYRIYLVSE--RQYSPLTLKAYLSDIDEFINFLAQNGGFTNFRAVQPLDVRVYLNDLYE 64

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
                +S  + ++S+R+ +++ V  ++V  NP  ++   K +      + + +M      
Sbjct: 65  RHLARTSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMATLFDT 124

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
            +        +     EFL  +G R ++     +  L  +   +    K      V    
Sbjct: 125 AYNQEDKLWQRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGNKDRYVPFGH 184

Query: 240 GFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
              + L               P   +  F+N+  + + A   +        ++ +     
Sbjct: 185 FAAQALMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQRSALTGKIH 244

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G   +   + YT  
Sbjct: 245 PHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 284


>gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 104/336 (30%), Gaps = 29/336 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP--- 68
           +   +     Y+ +K +G+  +      +        +    +  +   +++P K     
Sbjct: 12  RYLQKRDNTFYFRKKHNGKVFKRSLNTTDKRTARDLRNFYLRNLVEYGQLDAPEKVDYDV 71

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T   +  E+  S H   +  ++   + S  +  I+    D    +IT   +       K
Sbjct: 72  ITFGEVAKEW-ASIHKKEVRYSTWPDYVSSMNGHILPNFKDMPIAEITYGDVLKFRSGLK 130

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                A   L  M+ +F +A R+  +  N    ++R   +   I P++ +++ +      
Sbjct: 131 VGAKRANNILVPMKSVFDYADREGIIQDNVMRKIKRLSEEAPEIHPFSYDEVNRLLDAVH 190

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------I 232
              QP L      ++G+R  +           ++                          
Sbjct: 191 PWYQPYLIVA--FFTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYVYKKDGIPKTKKSK 248

Query: 233 ITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSAH- 287
             ++     ++ L+         +  F+  D ++M         +     KAG+      
Sbjct: 249 RYIKCLPQVLEALSEQRKLTGKNKHIFLTIDGRRMTPDHIRKEVWIPALEKAGIEYRPPI 308

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
             R   AT+   AG     +    G  ++    + Y
Sbjct: 309 QTRHTFATMMLSAGEDIGWVQNMLGHSSLQMIFQRY 344


>gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 329

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/307 (8%), Positives = 78/307 (25%), Gaps = 43/307 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGV--- 123
             I  + ++      + N+  S+                 K          +I       
Sbjct: 20  AYIKSFLEALVSSGKSKNTISSYFRDLKVFFDFKKSNPLLKKYKLEKLKPINITMYYSYL 79

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEY-----------VAINPCLSVERPKRKTEGI 171
              ++++  S  +    +++  ++    E            +      + + P       
Sbjct: 80  VADKQNSAVSIKRKKYVLKLFLEYLFEMEILEKTPIPKESVIKSKIKNNSKIPTYLEIEE 139

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                + ++         S+        L++GLR S+      + ++    +      G 
Sbjct: 140 IQKINQSIRDLYDDEFIRSRNFFIINLFLHTGLRISELVSLDFKDMEKTKKTDYLTVIGK 199

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------NATQFSIWF 273
                +    +  L+     ++         +                         +  
Sbjct: 200 GNKERIIPINVDELSKELGDEDNLIKVYLDDRKFIKSNTDALFISKKGGRLTQRYIQMEL 259

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K     + ++K  + H +R   AT     GA    +    G  ++   + YT      + 
Sbjct: 260 KKIIAYSNIDKRITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHS--DKQD 317

Query: 332 GIKNSRR 338
            +   ++
Sbjct: 318 LVNAMKK 324


>gi|226355111|ref|YP_002784851.1| Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115]
 gi|226317101|gb|ACO45097.1| putative Tyrosine recombinase xerC-like protein [Deinococcus
           deserti VCD115]
          Length = 379

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 106/371 (28%), Gaps = 43/371 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKR 58
           M        ++ + +   G    Y   G+G   + +  Y    T   A        + + 
Sbjct: 1   MAKRANGEGYIGRRKDGSG-WGGYVTLGYGPDGKQQRRYFSAKTQAEAREKLQALVSERN 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
               S   +  TL   +  +        +  N+  S+E      I  + G     K+T  
Sbjct: 60  GGCLSS--ETLTLAAYLDRWLTHKQ-RDVKFNTHRSYEMTARVHIKPRLGKVQLDKLTPL 116

Query: 118 HIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           HI   V +      SA   L     +R     AVR + V  N   SV  PK   + ++ W
Sbjct: 117 HIEELVSALLAEGQSAKVALGCVKLLRTALTQAVRWQLVGRNVAQSVTPPKHTPKEMQVW 176

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229
           T ++  +F    +   +    F   L +G+R  +      + +     ++  Q       
Sbjct: 177 TPDEASRFL-AVAREHRLYALFYLALATGMRRGELLGLKWESINMLAGTLVVQHNLIDRV 235

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------------M 264
                       +  T+ L    ++ L      +        ++               M
Sbjct: 236 SSVTLETPKTRASRRTIALSPDTVEALRAHRHSQWLEQCKAGEKWQEHGMVFPSDVGTLM 295

Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
                   F+    KA V     H +R  SA++   A      +    G          Y
Sbjct: 296 FPANLMGAFRRLCAKARVPAIRLHDLRHTSASLLIRANVPPKVVADRLGHTDPGFTLRVY 355

Query: 323 TKGADRIRLGI 333
               +  R   
Sbjct: 356 AHVYEEQRRAA 366


>gi|323143711|ref|ZP_08078381.1| site-specific recombinase, phage integrase family [Succinatimonas
           hippei YIT 12066]
 gi|322416514|gb|EFY07178.1| site-specific recombinase, phage integrase family [Succinatimonas
           hippei YIT 12066]
          Length = 355

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 100/341 (29%), Gaps = 36/341 (10%)

Query: 15  RTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + ++G       Y    G  +R              ++            +        +
Sbjct: 6   KEKNGTWRVVFVYQDWTGDRKRTTKRGFLTKREAKDWLD--------DFCLVKADDLNMS 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  Y +      L +N+ ++       +I+    D     I+   IR         
Sbjct: 58  FSSLVDAYFEDMAHR-LKLNTIMTKRQIVTTKILPYFKDKAVCDISAVDIRKWQAVMISK 116

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSF 185
            +S     T    +  +F +AVR   + +NPC        K       WT E+ + F   
Sbjct: 117 GNSETYLRTINNQLSTIFNYAVRFYDLKVNPCTKAGSIGSKNAVSKDFWTVEEFKTFADG 176

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNIFSIKTQKT 229
             +     + F  L ++G+R  +                      Q ++      K +  
Sbjct: 177 LYDNWDAYIGFNLLFWTGMRIGELLALNVKDFDLKAKTVSISKSYQRIKGKDVITKPKTL 236

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            +   V LP+  ++ L                       F+   +    + GV K   H 
Sbjct: 237 NSTRVVSLPNFLIEDLEDYFSHIYEVNDRYRLFPYTKHYFNYEMQQVCKRTGVKKIRLHD 296

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +R   A++  + G  A  +    G K ++    TY+    R
Sbjct: 297 LRHSHASLLVNMGLGAKVIADRLGHKRIETTLNTYSHLYKR 337


>gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 311

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 25/290 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---I 134
           +         A +++ ++       +         ++T   +   +   + + + A    
Sbjct: 17  FLSYMKDREYAKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGARYRN 76

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
           +  +++R+ +K  +R +  +INP + +E+ K +      + ++ +        EG    +
Sbjct: 77  RCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGRYKIR 136

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                  + Y+GLR S+  +  +        SI     G           +  L    + 
Sbjct: 137 DVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAELNKLLHMYLE 196

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGVNKSAHGVRKFSA 294
           +     +        +QF      +  +                 +G + SAH +R   A
Sbjct: 197 ERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLSAHKLRHSFA 256

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           T     GA    +    G + +   + YT   D  +   +   +I   + 
Sbjct: 257 TELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304


>gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
 gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6]
          Length = 299

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 90/295 (30%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127
           +  Y         ++ ++  ++    ++++            +  I++          + 
Sbjct: 5   LDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYCEKQQVSSWKSLDIQALRSLIARLHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +            +  FI+   +++      +  KA   +  G N   H +R   A
Sbjct: 185 EALQLWLPLRALANPQDDAVFISQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L         R   + DSD
Sbjct: 245 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKDSD 298


>gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756]
 gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756]
          Length = 309

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 31/286 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRK---------SGDFDYRKI 114
            T +  ++ +          +  +  ++     +Y + +             G+     +
Sbjct: 6   RTGRQALAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADL 65

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                          P S  Q L+S+R   ++  ++  VA      V  P+ K    RP 
Sbjct: 66  RGYLAFRRQGENALAPRSISQALSSIRAFHRYVDQRHGVANAAIGLVRGPRLKIGLPRPV 125

Query: 175 TKEDMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +++  +          +    E ++       L   GLR S++       +        T
Sbjct: 126 SEDQARDLIFEASGDTEREPWETARDEAVLTLLWGCGLRISEALSLTWSDVPLGAALRIT 185

Query: 227 QKTGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            K G      + D   +        L       E  F       ++        +    +
Sbjct: 186 GKGGKTRIAPVLDAVREAVAVYADELPFVLGPDEPLFRAKRGGPLSPRHVQALVQTLRGR 245

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            G+    + H  R   AT    AGA    +    G  ++   + YT
Sbjct: 246 LGLSDRVTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYT 291


>gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 20/335 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + R  +++ Y R    R   LP  H   F+ A+ +A    T              TL
Sbjct: 4   VRRQRRGERVVKYHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              I   + S  +  L+   +      FD +    G    + + ++HI + ++    +  
Sbjct: 63  AAAIRAEKTSRPFAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLDKL--SAD 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +A + L + R +   A R+  +  +P + V R K KTEG   WT+++++QF++ W  G+ 
Sbjct: 121 AANKRLKAWRRVMGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTV 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVE 236
            R  FE + ++G R +D+ R G  ++ +                +               
Sbjct: 181 QRACFELVCWTGARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAA 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
             +     LA    G      N   +  +           A  AGV KSAHG+RK+  T 
Sbjct: 241 ERETVKAALACLSGGFTFLEANGRVR--SVKGLGNVISEAARGAGVEKSAHGLRKYRLTA 298

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A+AG +AH +MA  G +T+ +AE YT+ ADR RL
Sbjct: 299 IAEAGGSAHAIMAWGGHQTLVEAEHYTRAADRRRL 333


>gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 325

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 103/344 (29%), Gaps = 36/344 (10%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   G      R     G R R  +  ++    AY   +       +      K    L 
Sbjct: 3   KKVDGGYFVDVRPAGRDGPRHRKTFKTQNE-AAAYQRYIIAEHANAKPWKEAPKDNRRLS 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            LI+ + K         N R ++    + +  + GD     IT K+  S   +R    + 
Sbjct: 62  QLINAWWKLHGQSLKRGNERKTY---LENLALQMGDPVANTITPKNFASFRSTRLKDVSA 118

Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WS 187
           ++A   L  ++ LF    R  ++   NP   + R K     +    +  + +  +     
Sbjct: 119 NTANHDLAYLKALFNELSRLGDWHQPNPFAEIRRLKTDETELTYLERSQIDELLTALDNC 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            GS   +     L +G R S++       ++NN  +    K+G +  V +      L+  
Sbjct: 179 RGSHAGIIARVCLATGARWSEAATLKPSQVKNNKVTFSKTKSGKVRAVPIAPELAALILN 238

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGAT 303
           +    + +                 FK    K  +        H +R   A+     G  
Sbjct: 239 SAPLVDGYS---------------AFKRTVGKLDLELPPGQLSHVLRHTFASHFVMNGGN 283

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              L    G   +     Y        L  ++      +    +
Sbjct: 284 ILTLQKILGHADIKMTMRYAH------LAPEHLNEAVQLNPLRN 321


>gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
 gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841]
          Length = 376

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 25/306 (8%)

Query: 35  LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +     AY   SAL  + PK+    SP   P         Y ++      + ++ 
Sbjct: 61  LSGFFDRHVETAYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAV 148
            ++  YF +  +     + R I  + I + +     T           + S++  F    
Sbjct: 113 RAYTVYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYF---- 168

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +       C  V+R KR+       +KE+++          +    F  L  +GLR S+
Sbjct: 169 EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263
                   +  +     ++  K        L    ++ L         +E  F     + 
Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEP 288

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  S   K  A +AG+ K    H +R   AT   + G     +    G   +   E 
Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348

Query: 322 YTKGAD 327
           Y   AD
Sbjct: 349 YVHIAD 354


>gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           BisB5]
 gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 329

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQII----RKSGDF----DYRKITTKHIRSGVES 125
            + +         L+  +  ++     Q +       G       + ++    +R+ + +
Sbjct: 30  FTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEATDVRAFMAA 89

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           R+       S ++ L  +R   ++  R+   ++    SV  PK K    +P      ++ 
Sbjct: 90  RRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPIQIAAAKRL 149

Query: 183 KSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                   + R              L  SGLR S++     + +            G   
Sbjct: 150 ADADERAGEDRETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDTLIVLGKGN 209

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
              +      +LA                           ++     +  +      G+ 
Sbjct: 210 KTRMVPVLQNVLAQIADYASACPHPLPPDGPMFVGARGGPLSPRIIQLAMERLRGSLGLP 269

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 270 DSATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 318


>gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 293

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 86/274 (31%), Gaps = 24/274 (8%)

Query: 76  SEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127
            ++     +  + +  +  S+            + D    +  +    IR+ +ES     
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAVDADLIRNWMESMMDKG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L+++R  +++ + + YV  NP   V  PKR     +   + +M +      
Sbjct: 64  CSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGEMDRLLDEVP 123

Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF 241
            G   R             +G+R ++        +           K      +   D  
Sbjct: 124 VGESYRDLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGKGSKQRLIPFADEL 183

Query: 242 MKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291
              L               + FF++   +++         +A      +   +S H +R 
Sbjct: 184 EAALKAYIARRDAEVARCDKAFFVDQRGERVKRGAVQNSVRASLAKVTSMKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   +  A    +    G +++   E YT  
Sbjct: 244 SFATAMLNNDAGLESVKKLLGHESLSTTEIYTHT 277


>gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
 gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 88/271 (32%), Gaps = 18/271 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
            +L  ++            +  ++     +I  +  D     +TT  ++         H+
Sbjct: 10  DYLYEQHLIHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       ++  FK  +++++  +N       P          T  ++    +  S+ 
Sbjct: 69  WSTVKINRNGLQFFFKHVLQRDWEWLNIVK----PPHVKTLPDILTPTEVSLLINATSQ- 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + ++ F  L   GLR  +     V ++ ++     I+  K G    + LP   +  L  
Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                +          N +   M+        KA     G+ KS   H +R   AT   +
Sbjct: 184 YWQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +    G  +++    YT   D  R
Sbjct: 244 RGLDLRSVQHLLGHNSLNTTAKYTHLTDISR 274


>gi|318065836|ref|YP_004123868.1| gp46 [Mycobacterium phage Wee]
 gi|315420919|gb|ADU15920.1| gp46 [Mycobacterium phage Wee]
          Length = 367

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 104/361 (28%), Gaps = 43/361 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---------Y 60
           F+   +  HG       K +G++  L    +      +  A+     ++           
Sbjct: 3   FIRPRKRAHGIGYAVLHKVNGQQTSLGTFDDEKEAEEFRDAVNSIGAEKAMLAWGITPTK 62

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHI 119
             + R    T+   +  Y  S     +   +   + SY    I    G      +T+  I
Sbjct: 63  QAARRSTAPTVSEWLERYINSR--TGVTKTTLHDYSSYLKHDIAPVLGAIPIDLLTSDDI 120

Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            + V+          +       +      AV    +  NP +    P+ + + +   T+
Sbjct: 121 AAWVQGLAARELAGKTIANRHGFLSAALNAAVAAHEIPHNPAIGTRIPRTERKEMCFLTR 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++     + +    + +    F++ SG R  +        +     ++   +        
Sbjct: 181 DEFNLLLAQF--APRWQPLVRFMVASGARFGEVSALRPADVDRTHNTVYIGRGWKRTYDG 238

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKAK 276
                       +V        LL       E  F N   + + A  F         +  
Sbjct: 239 AGYELGAPKTKRSVRTISVHPALLGDLDYSGEFLFTNTVGKPLRAPGFRSNVWYPAVEKA 298

Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRL 331
              AG+ K    H +R   A+     GA  + +    G +++      YT    +D  R 
Sbjct: 299 C-AAGLAKKPRIHDMRHTCASWMIAGGANMYAVQRHLGHESIQTTISLYTHLDRSDSERA 357

Query: 332 G 332
            
Sbjct: 358 A 358


>gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
 gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803]
          Length = 296

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 94/281 (33%), Gaps = 30/281 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVE 124
            +    +  Y +       A ++  ++++  +                +++   IRS + 
Sbjct: 1   MSFSAFLD-YLQLE--KKYAFHTITAYKADLNAFQDFIQNTFEQDTILEVSYSQIRSWIV 57

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +     +  + ++S++  +++ ++ + +  +P    +  K   +   P+++E++  
Sbjct: 58  ELSESGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVS 117

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQKTGTI 232
                     EG + RL  E    +G+R  +     +  L            ++++    
Sbjct: 118 VLENIDDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYIP 177

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVN 283
           +   + D  +K L                         +       + +F   + K  + 
Sbjct: 178 LISSVIDTAVKYLERRREEGVNHDSEFLFLTSKGDKIYESFVYRVINNYFSEVSGK--LK 235

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           KS H +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 236 KSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH 276


>gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 321

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 98/308 (31%), Gaps = 47/308 (15%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQII-----------------RKSGDFDYRKIT 115
           L+ ++         L++N+   +       +                 R         I 
Sbjct: 7   LLDDFLGYLVSTRGLSMNTVNGYYYDLKNFLVYIVARKLNFDTKELDDRYLEKMSLDLIK 66

Query: 116 T---KHIRSGVESRKHTP----SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRK 167
           T   + I +      HT     ++  +  +++R  F +   +   + ++P   ++ PK +
Sbjct: 67  TVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAIRTFFNYLTSKINVLEVDPSSDLDMPKVR 126

Query: 168 TEGIRPWT-----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                  +           ++     K+     S+      F L  G+R S+ C   +  
Sbjct: 127 RTIPTALSLDEAKRFLKTIEDFNYNGKNNDFLKSRDFCIATFFLNCGMRLSELCGINMFD 186

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSI 271
           L+++       K     ++ L    +  L      +            +K ++      +
Sbjct: 187 LEDDNTIKILGKGNKERSIYLNKACIHALDNYLEFRPEVESKALFLSRNKARITPRAVQM 246

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
                   +G++    S H +R  +AT+    G      L    G ++V   E YT  +D
Sbjct: 247 MIDKYIVMSGLDPDKYSVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSD 306

Query: 328 -RIRLGIK 334
            +++  I+
Sbjct: 307 EQVKRAIE 314


>gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
 gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1]
          Length = 278

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 95/270 (35%), Gaps = 12/270 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127
           L+  +  +++      +   + + ++    ++I       +++ITT+ IR  +   E + 
Sbjct: 3   LEKCLQLFQQEYE-RRIEKKTSVLYQRTVSEMITYC-SIPFQEITTRDIRKWLCHLEEKG 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++  + L  +R+ +K+ + ++ +A NP  ++  P+             +   +    
Sbjct: 61  RAPATISKKLFGLRLFYKYCLEEQLIAHNPVKAIRLPEINDRMPHYLLPNQLLLLQRMTE 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL 245
              + R   E L  +G+R S+     ++ +  +     I+  K      V       + L
Sbjct: 121 TNKRERAIVEVLYTTGVRLSELVAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYL 180

Query: 246 AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
                         F      + +        F   + + G+  S H +R   A   A  
Sbjct: 181 QAYLQERDSSCPYLFLNMRGTKPLGVRGIQHKFSDYSEELGIPFSPHTLRHTFAAHLAMK 240

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330
           G +   +    G +   Q + Y +  +  R
Sbjct: 241 GMSLDCIQTLLGHEDPHQTQIYARLYNHAR 270


>gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 374

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 114/372 (30%), Gaps = 44/372 (11%)

Query: 15  RTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K  +    G     G+R +       T   A   A      +    +    K  T
Sbjct: 6   RKRGEKWSFTIDIGKDPITGKRKQKTASGFKTKKEA-ERACNELIHQFNTGSLVDDKNFT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L   + E+ ++     +   +  +++   + +II   G    + +   H +  V+S    
Sbjct: 65  LSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLIDE 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             +P+        ++   + AVR E +  NP   VE P+ +      W+ E+ ++F +  
Sbjct: 125 GLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKFLNRT 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQK 228
             E       F   L +G+R  +      ++                      F+     
Sbjct: 185 KFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTEPKTH 244

Query: 229 TGTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +     +   +             L   +    +  F     Q +     +  F  
Sbjct: 245 GSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFNQ 304

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333
              KA V +   H +R   ATI    G     +    G  ++    +TY+     I +  
Sbjct: 305 FIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSHVT--IDMQE 362

Query: 334 KNSRRISSVVDS 345
               ++S  + S
Sbjct: 363 SAVLKLSEALKS 374


>gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi
           str. Ikeda]
 gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda]
          Length = 312

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128
           L+ +I+E+      + + ++N+  S+ +   Q +    D+ +  ++   H+ S       
Sbjct: 7   LEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMR 66

Query: 129 TPSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  S    L             +R  +K+  +   +      +V  PK      +    +
Sbjct: 67  SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQ 126

Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSI 224
           D            +    G++ +     L   GLR S++             +     + 
Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSESLIIKGKGNK 186

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                   IT +L   ++ L+  +       F+    +K+    F         +  +  
Sbjct: 187 IRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLPE 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AH  R   A+   + GA    +    G +++   + YTK
Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288


>gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 91/292 (31%), Gaps = 30/292 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123
             +         +  +  ++      + R +G+                ++ +    +  
Sbjct: 15  EAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTES 74

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E    + +S  +   ++R  F WA     V  NP  S+   +   +     T  + ++  
Sbjct: 75  ERGPRSAASLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R   E LL +G+R  +     +  +  +   ++ +  G +  V+  
Sbjct: 135 KELKGRTDFSTLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFI 194

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287
              ++ L    + +       + +         ++   Q +        KAG+ K  + H
Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G+R   AT    A      +    G + V   + YT   D      +   R+
Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304


>gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 312

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 26/276 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVESRKH 128
            E+ +        +  ++ +++         +++SG+ D   +  + +R   S +  R++
Sbjct: 21  EEFFRYLIVERGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVEYRDVRVYLSYLTEREY 80

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
           + +S  + + S+R  +++  + E V  NP   +   K+  +  R + +++M         
Sbjct: 81  SRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQSVAG 140

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQKTGT 231
                 + +   E L  SGLR S+     +  +               + +         
Sbjct: 141 DEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGSYAQA 200

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            +   L  G  +L+       E  F+N+    + AT           K+ ++     H +
Sbjct: 201 AVKRYLSSGRKQLMEKQNKEHEILFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHML 260

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G   +   + Y   
Sbjct: 261 RHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHV 296


>gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 317

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 40/301 (13%)

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +   A+++  ++       I    G    + I T  ++            P++  +    
Sbjct: 15  YKIYAISTWKNYYRSIKNHIFPALGHILLKDIKTDDVQRLYNKMAKAGLAPATIRRNHQI 74

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +      AV+ + ++ NP  +V+ PK     +R  T E+M +F     E      AF  L
Sbjct: 75  IHSCLNQAVKNKLLSWNPADAVKLPKLNDTPVRTMTPEEMAKFI-SVLENDLWGAAFLTL 133

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITVELPDGFM 242
           L +G+   +      Q +      +   +                      T+ +P+   
Sbjct: 134 LGTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKSKRTIPMPEPVA 193

Query: 243 KLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           + L    +                   F       ++   F+  F     KA V K  + 
Sbjct: 194 EALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLREKAKVPKDINL 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISSVVD 344
           H +R   AT   + G     +    G   +     TY+  + D  R       ++ +   
Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKLLTKKA 313

Query: 345 S 345
           S
Sbjct: 314 S 314


>gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654]
 gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654]
          Length = 315

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 37/291 (12%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVES 125
            IS + ++       + N+ +++                  G  D   +    I    E+
Sbjct: 9   WISAFLEAQAAELDASQNTLLAYGRDLKDFSGYLDRMGEDFGGADRATVEAYLI--DCEA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    S+  + L++++ ++++A  + +   NP L +  P +     +  +++D+++  + 
Sbjct: 67  QGLAVSTRARRLSAIKQIYRFAFEEGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNA 126

Query: 186 WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +         +     E L  +G+R S+     V   + +   +    K G    V L
Sbjct: 127 ARQHGRTDADRLRNACMMEVLYATGMRVSELVTLPVSAARGDPRMLLVMGKGGKERMVPL 186

Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                  LA                     +  F        +   +F    K  A  AG
Sbjct: 187 SPPARAALAAWLDVRDAAEDAARSKGAKPSRFLFPSTGKDGHLTRHRFHGLIKDIAVAAG 246

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           V     + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 247 VSPETVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDER 297


>gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 286

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 99/281 (35%), Gaps = 20/281 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I ++++  +    +  +   +             + +G      I +  I   + S K  
Sbjct: 7   IEQFQQYMNDIERSPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKSADIEGFLRSLKER 66

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P+S  ++L ++R  +K+A ++E V  +  L+V+  K  T+     +++++ +  +  
Sbjct: 67  NIAPNSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAE-LADT 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244
                 RL   FL  +GLR S+  +  +  +     I  + + K      V + +  + L
Sbjct: 126 ITNDLVRLIVIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINNKLLPL 185

Query: 245 LAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           L          + +N          ++ T  +   +      G  K  S H +R   AT 
Sbjct: 186 LIDYKDNWRDAYNSNFFFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHILRHSFATS 245

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
                    E+    G   +     Y     ++++  +   
Sbjct: 246 LVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQDAVNAL 286


>gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120
           + E+         ++ ++  ++      ++  +G+              D  ++ + H+R
Sbjct: 4   VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 63

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    +
Sbjct: 64  QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus
           S26/3]
 gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC
 gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3]
          Length = 312

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 96/294 (32%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKIT 115
           +Y K+      + ++  ++    +                            +  +  +T
Sbjct: 10  DYLKNIKTA--SPHTLRNYCIDLNSFKTFLEKHGELTPSPPICLLTKERQEAELPFSLLT 67

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R  +           +  + L++++   ++ V+Q  +  +P  +++ P+   E   
Sbjct: 68  KDTVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKQRILPDDPTETIQGPRLPKELPS 127

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T E ++   +        G + R   E    SGLR S+        +      I+ + 
Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINHWDIDFTSHLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKAT 278
                  V +     + L                +  F+N   +++        F+    
Sbjct: 188 KGKKERLVPITPHAAQWLQHYLTHPARTSIEKDAQAIFLNRFGKRLTTRSIDRKFQKYLR 247

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++G+  + + H +R   AT   + G     + A  G  +++    YT  + +++
Sbjct: 248 QSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301


>gi|85708192|ref|ZP_01039258.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689726|gb|EAQ29729.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 366

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 106/354 (29%), Gaps = 20/354 (5%)

Query: 9   PFVTKERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P         G   ++    ++G  RR+ L    ++T   A   A              R
Sbjct: 10  PGFGLRVHPSGCRTWFVMFRQRGKQRRVSLGTTRQNTATEARRIAREKLAEVALDGLPSR 69

Query: 66  KKPTT-------LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117
           K   +       ++     +           ++R    +  D+ I+   GD    +IT  
Sbjct: 70  KTTKSRAKEAPLMREYAERFWADY-AHHWKPSTRQRNRTGIDRDILPTFGDRRVDEITKA 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +       +  + +  + V+  +A +  Y +         P+ K + +  +   
Sbjct: 129 DISFWRDGFAERTGAFNRTIPILSVMMGYAEQIGYRSRGSNPCRGTPRYKRKRMERFLSA 188

Query: 178 DMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                       F +E S    A   L+Y+G RC +      + +Q     +   KTG  
Sbjct: 189 REYGQLATALDYFEAEHSAVVAAIRLLIYTGARCGEIENLSWEWVQEPRIMLPDSKTGAK 248

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           I          + ++           + +      +  + +     +A +     H +R 
Sbjct: 249 IVYLNRQAAEVITSIPDRKPTGLVFPSVRDPERPMKLGMHWPEIRNRAALPDVRLHDLRH 308

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             A+ +     +   +    G    +    Y   +D   +    + R+S  + S
Sbjct: 309 SFASTAIRDNISLMVIGKLLGHALAETTSRYAHLSDE--VIADAAERVSGSIAS 360


>gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
 gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247]
          Length = 313

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           ++ Y          A N+  S+    ++        G     ++T   IR  + + +   
Sbjct: 15  VARYLDHLTVERGAAHNTVTSYRRDLERYQNYLIARGISGLAEVTESDIREFLVALRRGD 74

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS  + L + R    +AV +  V+ +   +V  P+      +    +++ 
Sbjct: 75  EATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDEVL 134

Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                          + R   E L   G R S++    V  L     +++   K G    
Sbjct: 135 AILEASSTGDHPRALRDRALLELLYSCGARISEATSLDVDDLDTAARAVRLRGKGGKERI 194

Query: 235 VELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           V +       +    +              F+N    +++         + A +AG++K 
Sbjct: 195 VPVGGPAADAIDAYLVRGRPVLATRSAPALFLNARGGRLSRQSAWQVLVSAAERAGLDKA 254

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 255 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 294


>gi|221632578|ref|YP_002521799.1| putative integrase [Thermomicrobium roseum DSM 5159]
 gi|221156118|gb|ACM05245.1| putative integrase [Thermomicrobium roseum DSM 5159]
          Length = 359

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 99/346 (28%), Gaps = 41/346 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRR  +    E+         L     K     +P     T++ L   +  +      
Sbjct: 18  RDGRRFSVYGRTETEVRQK----LAELERKLAIDQAPPVGRVTVRELCERWLATER-KRW 72

Query: 88  AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
              +   +  + +  +    G     K+T   ++   +S   +  SA      +   F  
Sbjct: 73  KPKTYYDYRWHLEHHVYPVLGRVQLSKLTPDRLQRFFDSL--SGRSANLTFRLLHRCFVV 130

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLR 205
            +R  ++  NPC  V  P  +   I     + + +   +  E   P        L  GLR
Sbjct: 131 GIRWGFLGQNPCDRVVPPAYQAPPIELPDADALARLFRYCLESDDPYAGLVGLSLLCGLR 190

Query: 206 CSDSCRAGVQ----------------HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
             +                        +       + +      T+ + +  ++LL    
Sbjct: 191 RGEITALRWSDIDLQTGQLSVVRSGQWIAGRWVETEPKTRAGRRTIYVGEQGIRLLRRQK 250

Query: 249 -------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                               F   + Q ++ ++ +   +     +GV     H +R  SA
Sbjct: 251 ALVAQLKLQAGPAWQEHGLVFPGPNGQPLSPSRVAAAVQRICKASGVPPLRHHSLRHASA 310

Query: 295 TISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339
           +++  AG    E+    G   V      Y+      R   +   R+
Sbjct: 311 SLALLAGVPLPEVSRQLGHANVSITARVYSHCISDGRRVTEAIERV 356


>gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
 gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp.
           HGF5]
          Length = 346

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 102/317 (32%), Gaps = 41/317 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SG 107
             +   R+ I +      TL+  +    K     +L   +   +    +  I       G
Sbjct: 7   RKTVGTRQPIVNVALPSYTLQEAVDFVVKIKRANNLKERTISGYIQNMNYFIEWVTERYG 66

Query: 108 DFDYRKITTKHIRSG---------------------VESRKHTPSSAIQFLTSMRVLFKW 146
           +   R++T   +R                             +P+S    +  ++  F  
Sbjct: 67  EITIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVLKTFFAV 126

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYS 202
              +E +  NP  +V   ++  + + P + E++++F            +  +    +L +
Sbjct: 127 LFEEEVIDRNPAANVSLMRQDVDTVMPLSDEELRRFMKAPDQRQWAQWRDYVIMTLILDT 186

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM------TPIGK 252
           GLR  + C      +     SI       K     T+ L     +LL             
Sbjct: 187 GLRLGEICALEKPEIDFVKKSITLPASKNKNRKSRTLPLSTETARLLKQLIAETERNFDT 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
              F  N  ++++       F   A +A + ++   H +R   AT++A+ G +   L   
Sbjct: 247 TYVFTTNYGEQLSEKTIQKSFDNYAERAKLGRTVSPHVLRHNFATMAAENGMSIFHLQKL 306

Query: 311 YGWKTVDQAETYTKGAD 327
            G   +     Y + ++
Sbjct: 307 MGHADIATTRKYVQISE 323


>gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
 gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD]
          Length = 319

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 85/282 (30%), Gaps = 30/282 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV---ESR 126
           I  +         L+  +  ++ S        +  +    D   I+   I S +      
Sbjct: 22  IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYDERKIKDITTISQLDIESYIRTLNEL 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
                +  + L S+    ++ +    +  +    V+ PK+        + E++ +     
Sbjct: 82  GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                  +   +     EFL  +G R S++     + +  N   +K T K      V + 
Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201

Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              ++ L                    T F+N     ++             +A ++K  
Sbjct: 202 GCAVRALRNYMEKSRPELASKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPL 261

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303


>gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 4342]
 gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 369

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A    +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  EDYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDRG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F     
Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNQIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                     +    N     +    F   F      
Sbjct: 244 TIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AGV     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 AGVKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
             S  +
Sbjct: 362 NFSKSI 367


>gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 349

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 92/349 (26%), Gaps = 26/349 (7%)

Query: 14  ERTRHGK-IIY---YFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + GK   Y   Y    G+ ++++                +      +          
Sbjct: 3   YIEKRGKTWRYSISYVDDEGNRKKVQKGGYRTKQEAKR----IAEDLEYKMRNGYAVSND 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
            T      ++ +      ++ +++  +ES +  I         + I     +  +     
Sbjct: 59  ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGL 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            H+  +  +  + +R  F  A+ + YV  NP    E               +  +F    
Sbjct: 119 THSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASVPAKTEEMKFINESEFKKLK 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-------LQNNIFSIKTQKTGTIITV 235
             F  + +   L     L +G R S+  +   +        +       +T      I  
Sbjct: 179 HYFEQKNTTSSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDT 238

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                    +   P     +    D + +     +   +       +   + H +R    
Sbjct: 239 VTMKRIQSFIDSRPTNISGYIFTVDGKTITNAAVNKVLRKACANLNIKEITIHSLRHSFC 298

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADR--IRLGIKNSRRIS 340
           +I    G +   +    G       +  Y+        R   K  + + 
Sbjct: 299 SILIHHGFSILYISKHLGHSNPATTQSIYSHLLQETYEREDEKAMKLLE 347


>gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
 gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii
           CRIS 21A-A]
          Length = 292

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 93/273 (34%), Gaps = 22/273 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--- 126
           + ++          ++ +  S+    +         D     + I +  IR+ VE     
Sbjct: 4   VEQFLSYLSLEKGYSLKTIESYREDLNGFELFYKSCDEQLTLKSIDSDVIRNWVEYMMDN 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   SS  + L+++R L+++ ++  +V  +P   V  PK++        + +M       
Sbjct: 64  KAAVSSVNRRLSALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESEMDCLLRKE 123

Query: 187 SEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             G        R     L  +G+R S+     +  +     +   T K      + +   
Sbjct: 124 MWGGVYNDVLARAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQRIIPIGQE 183

Query: 241 FMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292
             + L      +      + FF+     ++NA Q     K   +K      ++ H +R  
Sbjct: 184 LEEELKSYLKKRVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLKKRTPHVLRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   +  A    +    G +++   E YT  
Sbjct: 244 FATAMLNHKAGLESVRKLLGHESLATTEVYTHT 276


>gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum
           magneticum AMB-1]
 gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 314

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 81/294 (27%), Gaps = 29/294 (9%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITT 116
                L   +  + +        + ++   +       +    +             +  
Sbjct: 9   AAKADLARAVESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGA 68

Query: 117 KHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              R+ +  R       SS  + ++++R  FK+  R + V      +V+ P+      +P
Sbjct: 69  GDFRAFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPRPPKSVPKP 128

Query: 174 WTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              ++  +               ++    F  L  +GLR  ++     + L      + T
Sbjct: 129 LAPDEALEALSSAGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDLPKGDTMVIT 188

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATK 279
            K      V +       +A             D          +N        +     
Sbjct: 189 GKGNKQRVVPVLPVVRDAIADYLKRLPYPAEPTDPIFLGARGGPLNPGVVQRQMRRLRQM 248

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            G+    + H +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 249 MGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301


>gi|148977143|ref|ZP_01813783.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963612|gb|EDK28874.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 375

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 100/324 (30%), Gaps = 12/324 (3%)

Query: 11  VTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +       G+ +++ R    G  R  +L    + +   A   AL      R         
Sbjct: 31  LYLRVYPSGRRVFFVRFQHNGLRRNHKLGSALDYSLRQARREALQVVQQVRS-PKMETLP 89

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             TL+    E+ K         N+    ES F  QI    GD + + I    +       
Sbjct: 90  SITLQAFGQEFFKRY-PRHWKPNTLKKNESAFRLQIAPYLGDREVQSIVRSDVEQWFTQL 148

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQ 181
            H   SA Q L  + V+ +     EY   N          +  + +    +   ++  + 
Sbjct: 149 SHVKGSANQALVLLSVMMQQCEAWEYRPKNTNPCRGFKRYKAGEVERYLSKDELRQLWRV 208

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +   +     +    L+Y+G R S+      +  +   + +   KTG           
Sbjct: 209 LDTLEGDNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGGHWHLLDSKTGAKTVYLCSQVR 268

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
             L A        F    + + ++  Q  I+++     AG+     H +R   A+I+  +
Sbjct: 269 AYLDAWQSESHYLFPAPCNTKPISTNQLGIFWRQARQLAGLEGVRLHDLRHTYASIAIQS 328

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
                 L    G    +    Y  
Sbjct: 329 KVNLIVLSRLLGHAEAETTLKYAH 352


>gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
 gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047]
          Length = 302

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
              +  + +S+ +   +  +         G     +   +     +  RK   SS  + +
Sbjct: 19  RHYSSKTVLSYRTDLLEAKKFWQENGGFNGWIKVNERDVQVYLQHLADRKLARSSQQRQM 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193
           +S+   +++  R+  + I+P  ++   + + +    + + +++Q             +  
Sbjct: 79  SSLHSFYRFLTRRRIIKIDPTQAITLRRGEKKLPEFFYQPEIKQVFDSLQGNKPLTVRNL 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248
             FE    +G+R S+     ++ +  ++ +I    K      V   D   K L       
Sbjct: 139 ALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKGNKDRYVAFDDRTKKSLVNYLENA 198

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    ++  F++N  + ++        +    +AG+      H +R   AT   + 
Sbjct: 199 RPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G   +   + YT  
Sbjct: 259 GADLRSVQELLGHSDLSATQIYTHV 283


>gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
 gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827]
          Length = 309

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRK 127
           +  + +       L+  +  ++      ++    + +  +         +++ +    + 
Sbjct: 17  VEAFLRYLQIERRLSPVTITNYRRQLTVVVEMLNEMNVSEWRQLDATKARNVAAKSRRKG 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +S    L+++R    W V+Q+ ++ NP  +V  PK K    +    +++ +  S  S
Sbjct: 77  LQAASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMDVDEVSKLLSMES 136

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + R   E +  +GLR S+     V+HL   +  ++          + L    + 
Sbjct: 137 GDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMGKGSKERKIPLGKTAVS 196

Query: 244 LLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
            L      +E +   +          ++++       F+    K GV  + + H +R   
Sbjct: 197 WLKRWLEMRELYEPEDGAVFISTKSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++      +    G   +   + YT   D   L 
Sbjct: 257 ATHILESSGNLRGVQELLGHANLSTTQIYTH-LDFQHLA 294


>gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 381

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 93/333 (27%), Gaps = 23/333 (6%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKPT 69
           R++ G  I     R   G+ +R     +    T    + +        +    +P KK  
Sbjct: 15  RSKRGGWICEIRIRLASGQIVRERVVAQVANKTEARLWAAKRRDQILAQGGTEAPVKKEV 74

Query: 70  -TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
            TL     ++ +  A       ++  + E  + + +   GD    ++    ++       
Sbjct: 75  LTLAEFWPKFIEGHAQANQQKPSTIATHERIWKKHLSSLGDRRLDEVDDAQVQLLKGRLS 134

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K  P S    +T +  + K  V    +   PC        K        +E  +   +
Sbjct: 135 AQKLKPKSVNNVVTVLSKMLKVGVEWRVIEAMPCRIRLLKSAKPVVEFYEDEELERLVSA 194

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TII 233
                 +  +A      +GLR  +        L      +K Q++               
Sbjct: 195 AGKVDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVTLPKGGKPR 254

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            V +       L      K    +    + +              +AG+ +    H +R 
Sbjct: 255 VVPMTARLKAALHAHRHLKGPRILYEGIEPITKWPLKWLIDVAERRAGLRQGGRVHILRH 314

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +  A        +    G ++V+    Y  
Sbjct: 315 TFCSRLAARNVPMLTIKGLAGHQSVETTMRYLH 347


>gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894]
          Length = 311

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D +     +                 + +  +  
Sbjct: 9   VESFLEMMSAERGAAANTLQSYERDLDDVSAFLKERGIRLTEAASADLAAYLASLARKGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L +MR  +K+   +     +P   ++ PK+     +    E++ +  S    
Sbjct: 69  KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAET 128

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            +Q                E L  +G+R S+      + L       +   K      V 
Sbjct: 129 EAQDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           L    +  L                       F   + +  +    F+   K  A +AG+
Sbjct: 189 LSQSAISALKSYGRLLAAENAAVKDPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 301

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 95/295 (32%), Gaps = 27/295 (9%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              I+++ +        A N+ +++ S         G       T      G E    + 
Sbjct: 4   SEAIAQFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGGEWMALSR 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S  +  + +R  F +   +     +P  ++ RP  +    R  +  D+++      E  
Sbjct: 64  TSVARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERLFDTLEERR 123

Query: 191 QPRLAF----------EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
           + R A           E L  SGLR ++        L+ +   +    K G    V + D
Sbjct: 124 RDRHADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKGGRERLVPISD 183

Query: 240 GFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293
                +A       T            ++  +     +  A +AG+     S H +R   
Sbjct: 184 RARMAVAEWGAHVPTDQPWLFPSGHGHLSRVRLFQLVRELAAEAGIPPQRISPHVLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    L    G   +   + YT           NS  +  +V++  P
Sbjct: 244 ATHLLEGGADLRALQTMLGHADIATTQIYTHV---------NSAHLVELVNARHP 289


>gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2]
          Length = 328

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 24/324 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +T  +   G+         G+R R  +  +        +A    +    +   P+ +   
Sbjct: 1   MTITKLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQIEANARQKCSENPNWTIKPKDRRR- 59

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTK---HIRSGVE 124
           L  L+  + +      L   +  + +        I +  GD     +       +RS   
Sbjct: 60  LSELVELWYE------LHGQTLANGKRCVAILRLIAKDLGDPVAVSLEPAKVACVRSLQV 113

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
           ++  +   A   L  ++ ++    +   +     +   RP +  E    +  +       
Sbjct: 114 AKGMSGKYANNRLGYLKSMYNELRQLGTIDYENPVGRMRPLKLQEKPLSYLTKHQVSELL 173

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                 +    P++     L +G R  ++    +  L+ N       K+  + +V + +G
Sbjct: 174 AALDARTTSPHPKMVARICLATGARWGEAQALTLDRLKGNTVIFANTKSKRVRSVPISEG 233

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K +         F             F I   + + K    +++H +R   A+     
Sbjct: 234 LAKEIRQHWQTHGPFTNCLGV-------FRIVLLSTSIKLPRGQASHVLRHTFASHFIMN 286

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    G  ++     Y  
Sbjct: 287 GGHIVTLQHILGHASLSMTMRYAH 310


>gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
 gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 10876]
          Length = 369

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSISIEKSTFAGYRAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKPPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  ++ L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIEALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
 gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1]
          Length = 311

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           +  IS + ++       A N+R+++           G      +T      +   +  E+
Sbjct: 7   ERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L+S+R L+++   + + A NP + +  P R     +    E++ +    
Sbjct: 67  QGLSSATRARRLSSIRQLYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEA 126

Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +  +        R   E L  +G+R S+     V   + N   I    K G    V L
Sbjct: 127 ARDKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPL 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281
                + LA     ++       K                  +    F +  K  A  AG
Sbjct: 187 SPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           V+    + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 297

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 22/264 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG--VESRKHTPSSAIQFLTSM 140
             L   S  ++ S   Q             K ++K I         + +  S  +FL SM
Sbjct: 19  RGLLPKSITAYLSDLHQFFCYLDSVGVEPAKFSSKDIEGFLASAKDRLSARSTARFLCSM 78

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196
           R    +   + Y   +P   ++ PK      +  ++  + +F +        G + R  F
Sbjct: 79  RAFSAFLKLENYRDDDPLSLIDNPKLPQSLPKIMSEATVDEFINAITTDTDVGLRDRAMF 138

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E +   GLR S+        L       I   K      V L D  +  +          
Sbjct: 139 ETVYSCGLRVSELVNLTFDSLNLVDGYLIIRGKGDKERLVPLGDNAVWWIKRYLAEGRIS 198

Query: 256 FINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
               ++              +   F    K  A+K G++K  S H  R   AT   +  A
Sbjct: 199 KDPKNQCPYVFLSGKGVGPLSREGFWYRVKYYASKIGLSKAPSPHTFRHAFATHLLNHDA 258

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G  ++   + YT  A
Sbjct: 259 DLRSVQLLLGHSSLTTTQIYTHVA 282


>gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 336

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 99/307 (32%), Gaps = 37/307 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK----------SGDFDYRKITTKHIRSGV 123
           L   YR++      +  +  +       +                    +         +
Sbjct: 32  LCQAYRRNLVLSGRSPKTLKAAMDDLALLAALEARLLEGGAGFLWERLDRPRALRFVKRL 91

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R + PSS  + L+S+R  + +   Q ++A +P   +  P+         T+ + +   
Sbjct: 92  HDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETLV 151

Query: 184 SFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231
           +                 + R   E    +G+R S+ C    +     I S++ +  G  
Sbjct: 152 TAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGGK 211

Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    +K L                  F + D   ++  Q S   K  A +AG+ 
Sbjct: 212 ERRVPVVGEALKALCALREFLLKSGVSPTGPLFADGDGGALSPWQVSRIVKKYAREAGLQ 271

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K+   H +R   AT   D  A   E+ +  G  ++   + Y           + +R++S 
Sbjct: 272 KTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTG-----LSEIARKLSK 326

Query: 342 VVDSDDP 348
           + D   P
Sbjct: 327 IRDETPP 333


>gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
 gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 96/289 (33%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127
            I  +  +     + A N+R+++                D+ ++    I +         
Sbjct: 5   WIDAFLDAQAAELNAAENTRLAYARDLMDFQGHIRRRGLDFDQVQRADIETYLIACSDAG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            + ++  + L+++R L+++A  + +   NP L ++ P R     +  ++ D+ +  +   
Sbjct: 65  LSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKRLPKTLSEADVDRLLAAAR 124

Query: 186 ---WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
               S   + R A    L   +GLR ++ C   V  ++ +   I    K G    V L  
Sbjct: 125 NTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVRGDPHLILVRGKGGKERMVPLST 184

Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                L                      K  F        +   +F    K  A  AGV+
Sbjct: 185 PARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKLGHLTRHRFYALIKDIAVAAGVD 244

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    + A  G   V   E YT   D  
Sbjct: 245 PSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDAR 293


>gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
 gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075]
          Length = 302

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
              +  +  S+++   +  +         G  + ++   +     +  RK   SS  + +
Sbjct: 19  RHYSELTISSYQTDLLEAKKFWQENGGFDGWKNVQERDIQIYLQNLADRKLVRSSQARQM 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +S+   F++  R++++ I+P   +   + + +    +   +++Q             +  
Sbjct: 79  SSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNELKQVFDSLKGNKPLTMRNL 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248
             FE    +G+R S+     ++ +  N+ +I    K      V   D   K L       
Sbjct: 139 ALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAFDDHTKKSLVRYLEDA 198

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    ++  F++N    ++        +    +AG+      H +R   AT   + 
Sbjct: 199 RPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G  ++   + YT  
Sbjct: 259 GADLRSVQELLGHSSLSATQIYTHV 283


>gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457]
 gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28]
          Length = 341

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+  +      +        I+ 
Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329


>gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIR 120
           + E+         ++ ++  ++      ++  +G+              D  ++ + H+R
Sbjct: 4   VDEFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLR 63

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK + +  +    +
Sbjct: 64  QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
 gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium
           multivorum AIU301]
          Length = 301

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 89/292 (30%), Gaps = 24/292 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           +  L     +      L   ++  +  +                T + IR     +  + 
Sbjct: 10  VSALRQRMLEDMAMRGLRSATQRDYIRFVQSFAAFL-RRPPDTATAEDIRRFQVHQHESG 68

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P +    ++++R  F   + +  ++    L+        +     + +++ +      
Sbjct: 69  VQPPTINCSVSALRFFFTVTLDRPDLSRRLVLAR----SPRKLPDVLSVDEVGRLLEAA- 123

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
            G + +        +GLR S+     V  + +    I+    K        L    + LL
Sbjct: 124 PGIKYKAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKGRKDRNAMLSPQLLALL 183

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            +                 F   +    ++  Q +      A  AG+ K  S H +R   
Sbjct: 184 RLWWTEGKRRGVMLPHGWLFPGRSAADPVSTRQINRAVHEAAEAAGIRKRVSPHTLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
           AT   +       +    G   +D    Y + A + IR       R++S+++
Sbjct: 244 ATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSVTSPLERLASLME 295


>gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
 gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542]
          Length = 310

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++ E+         L+ ++  ++ S          + G      +    +R  +      
Sbjct: 16  VLEEFSAHLTSQRGLSEHTVRAYASDLAGLSSFAHQVGAGPLAAVGLDTLRGWLAQMAGR 75

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
               S+  +   ++R  + WAVR   V  +P + +  P            +         
Sbjct: 76  DLARSTVARRGAAVRAFYGWAVRSGRVGSDPSVRLGSPTVSKTLPTVLAVDSATALMETA 135

Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
                       +     E L  +G+R  +     +Q +  +  S++          V  
Sbjct: 136 RTAAVDGDPAALRAWACVELLYATGVRVGELVSLDLQDVDLDTRSVRVVGKGDKERVVPF 195

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                  L                    F+    Q+    Q        +  A V+  + 
Sbjct: 196 GVPAATALRSWIEDGRPGLERGSGATAVFLGQRGQRWGQRQVRETVHRLSAAASVDDVAP 255

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           H +R  +AT   + G+    +    G  T+   + YT   A+R+R   +
Sbjct: 256 HDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQ 304


>gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
 gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131]
          Length = 353

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 24/341 (7%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++LP    +   R  +++ Y R    R   LP  H   F+ A+  A            +P
Sbjct: 1   MKLPR--VQRIRRGDRVLCYHRPTGTRLPDLPETH-PEFVAAWAKAEATKPDL-----AP 52

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                ++  ++   R S  W   A + R+S   + ++I  + G    R +  KH+   + 
Sbjct: 53  PVADKSVAKVVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVEMDLG 112

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P      L   R++F  A     +  +P   + +   K+ G   WT  ++  F++
Sbjct: 113 KLDPNPR--NVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRA 170

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-- 242
            W+ G++ R AFE L ++G R SD+CR    H+ ++      Q+    +        +  
Sbjct: 171 RWAVGTRQRAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPS 230

Query: 243 KLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
             L      +                    +  +    S +  A A +AG+  ++ HG+R
Sbjct: 231 WALRWEEERETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLR 290

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           KF  T  A+AG  AH +MA  G  ++ +AE YT+ A R  L
Sbjct: 291 KFRLTAIAEAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 331


>gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
 gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131]
          Length = 311

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
           +  IS + ++       A N+R+ +           G      +T      +   +  E+
Sbjct: 7   ERWISAFLEAQAAELDAARNTRLGYGRDLKDYAAWLGRRSEDFLTATRDTVEAYLTFCEA 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L+S+R L+++A  + + A NP + +  P R     +    E++ +    
Sbjct: 67  QGLSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEA 126

Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
             +  +        R   E L  +G+R S+     V   + N   I    K G    V L
Sbjct: 127 ARDKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPL 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAG 281
                + LA     ++       K                  +    F +  K  A  AG
Sbjct: 187 SPPAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAG 246

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           V+    + H +R   AT     GA    +    G   +   E YT   D
Sbjct: 247 VDPAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295


>gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium
           perfringens ATCC 13124]
 gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens ATCC 13124]
          Length = 354

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 89/334 (26%), Gaps = 22/334 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--KPT 69
            +++ +  + I  ++  +G+  +       T   A   A       ++ I +        
Sbjct: 7   YRQKDKGWQFIISYKDYNGKWRQKSKQGFKTKKEAKPIAEKMLQDLKKNIKTSNNSFGKI 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T K     Y +          +     +   +      D +  KIT   I+  +++    
Sbjct: 67  TFKAFSDMYLEHEKLYK-EPKTIDGLVTVLHRFQD-LNDKELCKITNLDIQKLIDNMTKE 124

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++   +L  +  +F  A  +  +         +  +     +    +D        
Sbjct: 125 HLNNNTIRYYLKILNSIFLCAKFKYNILDEVPSKYIKIGKPIPTKKKALNDDEINDLLLK 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239
            + ++  L     + +G+R  +        +  N   I   K   I+             
Sbjct: 185 FKNNKYYLVVYLAVNTGMRIGEILGLTWNDIDFNNCLISVNKQWKILKDNSWGLGSVKSK 244

Query: 240 GFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             ++++ ++                 N      +             + G N S H +R 
Sbjct: 245 NSIRIIPISNSVSEELLKYKTIINIDNRVFNFKSKNTILSRVNILLKEYGFNISLHELRH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT     G          G       + Y+  
Sbjct: 305 TYATKLIANGVDFKTAAKILGHSVEQTMKVYSHV 338


>gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 311

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 30/284 (10%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            + ++      L+ ++  ++E    Q +    G         D R++ +   R+ + +R+
Sbjct: 18  AWLENLASERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDIRELRSADFRAFLAARR 77

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
              S A    + L  +R L +   ++  V      +V  PK+     +P +         
Sbjct: 78  KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVS 137

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
              Q        ++       L   GLR S++       LQ    +++          V 
Sbjct: 138 DDAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVP 197

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287
           L       +              +     A              +   +  G+    + H
Sbjct: 198 LLSVIFDAVEKYRTLCPYHLEAGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 258 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300


>gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
 gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114]
          Length = 323

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 100/308 (32%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127
            IS + ++       A N+ +++                D+   T   + +     +++ 
Sbjct: 7   WISAFLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATATQGDVEAYLIACDAQG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L++++ L+++A  + + + NP L +  P R  +  +  ++ ++ +      
Sbjct: 67  LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126

Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSC-----RAGVQHLQNNIFSIKTQKTGTIITV 235
              +            E L  +G+R S+        A        I     ++    ++ 
Sbjct: 127 TSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV- 282
              D   + L +    +                       +   +F +  K  A  AGV 
Sbjct: 187 PARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGHLTRHRFYLLIKELAVNAGVS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT     GA    +    G   V   E YT   +          R+S
Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLE---------ARLS 297

Query: 341 SVVDSDDP 348
            +V +  P
Sbjct: 298 ELVLTHHP 305


>gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J]
 gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC
 gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J]
          Length = 328

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 93/298 (31%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y  +  +   L+ ++  S+      +     + + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  FKW   R   V  NP   V  PK      +  + E        
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                    + R   E     GLR S+     ++H++   +   +               
Sbjct: 139 LPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 230 GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
               TV +     + LA               P      F++   +++   Q  +  K  
Sbjct: 199 SKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315


>gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195]
 gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195]
 gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678]
          Length = 296

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 82/282 (29%), Gaps = 19/282 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++  +         +  ++     +I     D     +TT  ++         H
Sbjct: 9   FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +   + + +  +N       P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYFHVLNKSWQWLNIVK----PPQVKHLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    V  +        I+  K G    V LP   +  L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182

Query: 247 MTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          +                 K    +  ++K  S H +R   AT   
Sbjct: 183 YYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRI 339
           + G     +    G  +++    YT+  D   +   +   ++
Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQL 284


>gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 344

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 106/324 (32%), Gaps = 21/324 (6%)

Query: 33  IRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           +R+       +   Y           A+           +  +   T   L   + K+ H
Sbjct: 23  VRVTTGWSKDYKQQYKYLGYYTTRKDAMQALAEYNTNPYNIDESEITFGELHERW-KNKH 81

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +  L+VN+  ++ + F+   +   +    +I T H+++ ++       + +     +  +
Sbjct: 82  FKDLSVNTIKTYNTAFNY-CKPILNLKMTEIKTVHLQNFIDDLNKNHGTLMILKNVINQV 140

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F++A++ + +  +    +   KRK    +    +          +  +       ++Y+G
Sbjct: 141 FEYAMKLDIIQKDYSKFINVGKRKVLKEKSVFTDAEIDLLWDNLQNFKYADTILIMIYTG 200

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINN 259
           +R  +      Q +     +I  +++         + +     +L+ +         +  
Sbjct: 201 MRIGELLSLMKQDVDLIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEHSNIDNLIA 260

Query: 260 DKQKMNA----TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +         +F        +N + H  R   AT   DAG  A  +    G ++
Sbjct: 261 SATNKTSLEYVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAIKKMIGHES 320

Query: 316 VDQAE-TYTK-GADRIRLGIKNSR 337
               E  YT    D +R  ++   
Sbjct: 321 FTLTEKVYTHKKIDELRKALELVN 344


>gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis
           Fe/C-56]
 gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC
 gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 312

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI---IRKSG------------------DFDYRKIT 115
           +Y K+      + ++  ++    +     + K G                  +  +   T
Sbjct: 10  DYLKNIKAA--SPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLFT 67

Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +R  +           +  + L++++    + ++   +  +P  ++  P+   E   
Sbjct: 68  KDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELPS 127

Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T E ++   +        G + R   E    SGLR S+        +  N   I+ + 
Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278
                  + +     + L       E           F+N    ++        F+    
Sbjct: 188 KGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYLR 247

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +G+  N + H +R   AT   + G     + A  G  +++    YT  + +++
Sbjct: 248 LSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLK 301


>gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114]
 gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
 gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114]
 gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11]
          Length = 303

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 85/283 (30%), Gaps = 22/283 (7%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR 126
               +  + +       L++ ++ +++     I     + G   ++ +    +R      
Sbjct: 9   FSKHLDAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLVELGVESWQDVDAGWVRQVTSKG 68

Query: 127 KHTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 A    T +      F + V +  +  NP   V  P++     +    ++M Q  
Sbjct: 69  MREGLKASSLSTRLSSLRSFFDFLVLRNVLTANPAKGVSAPRKSRPLPKNIDVDEMGQLL 128

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
               +     + R   E +  +GLR ++     V+ +Q     ++          V    
Sbjct: 129 EVNEDDPLSIRDRAIMELMYGAGLRLAELVSIDVRDIQLRQGELRVIGKGDKERKVPFSG 188

Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              + L      +       +K         +++             K GV  + S H +
Sbjct: 189 QAKEWLGHWLRVRNQLAKPEEKGLFVSKLGVRISHRNVQKRMAEWGLKQGVNSHISPHKL 248

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   AT   ++      +    G + +   + YT   D   L 
Sbjct: 249 RHSFATHMLESSGNLRAVQELLGHENISTTQIYTH-LDFQHLA 290


>gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein
           [Leuconostoc fallax KCTC 3537]
          Length = 308

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 88/279 (31%), Gaps = 28/279 (10%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           +  YR    +  L +  +  ++     + +       G   Y K+ T  IR  +      
Sbjct: 6   LQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKVQTLDIRVYLNDLYER 65

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               ++  + ++S+R+ +++ V    +  NP  +V   K +      + +E+M+      
Sbjct: 66  SLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEEEMKVLFDTA 125

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSIKTQK 228
           +        +     E L  +G R ++     +  L                 +    + 
Sbjct: 126 YNQHTKLWQRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRGKGDKERYVPFGKF 185

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
              I+     +   +LL       +  F+NN    +     S        ++ +      
Sbjct: 186 ADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQLMKQSSLNGKIHP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   +   + YT  
Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHV 284


>gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 313

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 32/271 (11%)

Query: 90  NSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144
           N+++ +                D+   +   + +      ++    ++  + L+S+R L+
Sbjct: 25  NTQLGYGRDLADFADWLARQGGDFATASRATVEAYLVFCGAQGLAAATRARRLSSIRQLY 84

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFE 197
           ++AV + + A NP L ++ P +     +  +  ++++             E ++     E
Sbjct: 85  RFAVEEGWRADNPALRLKGPAQAQHLPQVLSLAEVERLLQAARDKGRTGAEQARNAALLE 144

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGK---- 252
            L  +G+R S+     V  ++ +   I    K G    V L       LA     +    
Sbjct: 145 LLYATGMRVSELVGLPVAAVRGDPRMILVRGKGGKERMVPLSPPARAALADWLAQRDTAE 204

Query: 253 ------------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
                         F   +    +    F    K  A +AGV+    + H +R   AT  
Sbjct: 205 AVAVKAGKPASKHLFPNRSAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHL 264

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
              GA    +    G   +   E YT   D 
Sbjct: 265 LAGGADLRVIQTLLGHADIATTEIYTHVLDE 295


>gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
          Length = 341

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+         +   R    I+ 
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329


>gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 324

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 55  TPKREYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----G 107
            P      +        +W      Y         +  +  ++   F+   R        
Sbjct: 10  EPANPKAEAALPAEVQAEWWQPFENYLAHE--RRYSAYTVRNYRQAFEDFYRWLVLAGVW 67

Query: 108 DFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +  +  +  + +R       R+    +    ++ +R  FK+ +R+  V  NP L V  PK
Sbjct: 68  ERGFDALQMRELRDFVIEAQRRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPK 127

Query: 166 RKTEGIRPWTKEDMQQFK-----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            +    +  T+E M +                    + RL  E L  +GLR S+      
Sbjct: 128 LEKRLPKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNY 187

Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNA 266
             +       +            +    + +L                  +     +M+ 
Sbjct: 188 GAIDLEAGVARIVGKGRKERLCPIGRVAVAVLRKFRDEFAPATAPDAPVIVTQRGTRMSP 247

Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +  +  K     A +    + H +R   AT   +AGA    +    G   +   + YT 
Sbjct: 248 REVQLMLKRYLALAELPMDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTH 307

Query: 325 GA 326
            +
Sbjct: 308 VS 309


>gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO]
 gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO]
 gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 380

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 48/361 (13%)

Query: 14  ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++G+  + F          G+ IR       +   A  +        +E        
Sbjct: 7   YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEAQTALNRLLVDFKEKQEFKINV 66

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V   
Sbjct: 67  -TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184
             T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F  
Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQ 184

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225
              E +  +L   F L  Y+G+R S++     + +     +                   
Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270
            +   +  T++L D  +K L +    +    I       +  QF               +
Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     
Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364

Query: 328 R 328
           +
Sbjct: 365 Q 365


>gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 376

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y ++      + ++  ++ +YF +  +     + R I  + I + +    ++R  +    
Sbjct: 98  YAETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 157

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + S++  F     +       C  V+R KR+       +KE+++          +  
Sbjct: 158 NLRINSIKFYF----EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 213

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248
             F  L  +GLR S+        +  +     ++  K        L    ++ L      
Sbjct: 214 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL 273

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              +E  F     +    +  S   K  A +AG+ K    H +R   AT   + G     
Sbjct: 274 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 333

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +   E Y   AD
Sbjct: 334 VKELLGHNQLKTTEMYVHIAD 354


>gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 332

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 38/283 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
              +  +   +     Q        D    T   I         + +  +    SS  + 
Sbjct: 30  KGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQHVGKSSMGRK 89

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189
           L+++R  F++  R+ ++   P   +  P++     R    +         ++        
Sbjct: 90  LSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTRTQAASRAQVH 149

Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228
                     ++     E L  SGLR S++    + H   +              I    
Sbjct: 150 VRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGKGSKERIVPLS 209

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             +   ++L     + L ++   ++  F+     ++N  Q     +     AG+ +  S 
Sbjct: 210 DTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCRAAGLPQAVSP 269

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT   +AGA    +    G + +   + YT    R 
Sbjct: 270 HALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRK 312


>gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 398

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 110/377 (29%), Gaps = 58/377 (15%)

Query: 25  FRKGHG---RRIRLPYPHESTFIPAY---------MSALTGSTPKREYINSPRKKPTTLK 72
           +R+  G    +I +           Y            +  +    +           LK
Sbjct: 16  YRRKDGLWCGQITIGRDESGKQKRQYFYGKTRQEVADKIAKALNDLKNGVYVDPARLLLK 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             ++ +       +L  ++   +ES  +  I+   G +  + +  +H+++   S+     
Sbjct: 76  DWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYNSKYGNGL 135

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       +      A++   V  N   +   PK KT+          QQ      E
Sbjct: 136 SLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKTKTKNEIRVLTLQEQQRFIAALE 195

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
           G + R AF   L SG+R  +        +     +I  +++                   
Sbjct: 196 GERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKNLPTKTMLAF 255

Query: 233 ---------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF 269
                     T+ +P   ++ L                        F       +    F
Sbjct: 256 QEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNNLVFATELGTPIEPRNF 315

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              F     KA ++ + H +R   AT   +A      +    G   +      Y+     
Sbjct: 316 LRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPE 375

Query: 329 IRLGIKNSRRISSVVDS 345
           I+     + +++++ ++
Sbjct: 376 IKKA--AAMKLNNLFEN 390


>gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 107/376 (28%), Gaps = 50/376 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G+   Y R   G++                +AL     ++E           LK  + 
Sbjct: 16  KDGRFAGYIRLEGGKKKYFYGSTRKEVQDKVRAALN----EKERGTLATGPNPLLKDYLP 71

Query: 77  EYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           E+ ++       A ++ + + S     II + G    R +T +HI+     +      P 
Sbjct: 72  EWLETVCKPPYRAPSTYLHYRSAMKKHIIPEIGHLKIRNLTPRHIQELYAKKIRDGAKPP 131

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +      A++ E V+ N    V  PK     I P T+E  +      + G +
Sbjct: 132 TIKLMHEVLSGSLNSALQWEMVSKNVASQVTVPKGVQREIVPLTEEQARVLLE-IARGHR 190

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVELP 238
                   + +GLR  +        +              +  F    +K       +  
Sbjct: 191 LEGMILLAVTTGLRRGEITALKWSDIDFDARLLFIKHTVSHVAFMGYVEKEPKTRAGKRT 250

Query: 239 DGFMKL----------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
               +                       L+        F         +       F   
Sbjct: 251 IHLPEAVIQTLQQHYSEQKAKAEEMGLSLSEWNPKGLVFLSKLRSYMHSPQTLKE-FHQI 309

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334
             +AG+ K   H +R  +ATI    G     +    G  ++      Y+     +R  + 
Sbjct: 310 VAQAGLPKMRFHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMPSMRKEVA 369

Query: 335 NSRR--ISSVVDSDDP 348
           +      S   + D+P
Sbjct: 370 SIMDTIFSEEKEGDEP 385


>gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus
           B4264]
 gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus
           B4264]
          Length = 369

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKVLINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1]
 gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1]
          Length = 296

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 85/266 (31%), Gaps = 28/266 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFL 137
              + ++ +++    +       +        K+    IR  +    ++     +  + +
Sbjct: 14  KKYSKHTALAYIRDIEMFQDFLEEHHDSEVLSKVGYSEIREWIVKLVNSGISNRTVNRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQP 192
           +S+   FK+ ++ + + INP    +  K   +   P+++E+         +    E ++ 
Sbjct: 74  SSLNTYFKFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEVHDFESARN 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT-------------VELP 238
            L  E    +G+R  +     +  +           K                       
Sbjct: 134 HLIIELFYATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLIDSLIISIKNYLKY 193

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
              ++ +    +   T       + +     + +F   +TKA    S H +R   AT   
Sbjct: 194 RSQLETINDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKA--KCSPHVLRHSFATHLL 251

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + GA  + +    G  ++   + YT 
Sbjct: 252 NQGADLNAVKELLGHTSLAATQVYTH 277


>gi|317473501|ref|ZP_07932793.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899012|gb|EFV21034.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 369

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 43/360 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRL----PYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
             +  ++G      R    +  R                +         ++  +      
Sbjct: 3   VYKTEKNGTWYAMVRYKDWKGERKQKCQRGFATKREAQEW--------ERQFQLQKQANM 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             TL+     Y        L  N+ ++ ES    +I+   G     +IT K +       
Sbjct: 55  DMTLESFCKLYEADVRPR-LKENTWLTKESIIQSKILPYLGQRKVSEITAKDVIDWQNEM 113

Query: 127 K---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176
           +          +P+        +  +F  A+R   ++INP          +++ +  WTK
Sbjct: 114 RSQKGKTGKPVSPTYLKTIHGQLSSIFNHAIRYYDLSINPARKAGTMGAEESKEMLFWTK 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           E+  +F     +      AFE L + G+R  +           +  ++   K+       
Sbjct: 174 EEYLKFAEAMMDKPLSYYAFEMLYWCGIREGELLALTPADFDFHNQTVAINKSYQRLKGR 233

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                         V++P    + +        +    +    +     S         A
Sbjct: 234 DVITSPKTKKSNRVVKMPQFLSEEMEDCMKLYYSLKSTDRLFPVTKHYLSHEMDRGCKAA 293

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           GV +   H +R    ++  D G TA  +    G ++      Y       +   + + R+
Sbjct: 294 GVKRIRIHDLRHSHVSLLIDMGFTALAIGDRVGHESEKITYRYAHLFPSKQ--TEMADRL 351


>gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9]
 gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9]
          Length = 291

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 86/291 (29%), Gaps = 26/291 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             + +YR        + N+  S+ S  ++ +R  GD   ++   + +       ++    
Sbjct: 2   DWVEKYRDVLQQSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQDAREYRNYLLN 61

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                PSS  + + +++   ++ ++           +         IR  ++ ++ + K 
Sbjct: 62  IIKLKPSSINRKMAALKNFNQFLIQTGTGTEANICGISVADIHDREIRTISRNELNRLKR 121

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233
                   R      L   +G+R S+     +Q +           +   I+  K G   
Sbjct: 122 AVYASGNKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKYR 181

Query: 234 TVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            + L     K L                  +  +         K     +G+   SAH +
Sbjct: 182 EIPLNSQVKKALEEYLAIRPSSSDRIFIGQRGPLRRESVDKIIKKYCRISGIEEISAHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339
           R    T     G     +    G   V      Y + +   ++      ++
Sbjct: 242 RHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRADKIA--AVEKL 290


>gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 86/353 (24%), Gaps = 23/353 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R  +GK     RK                       + G     E     +K+  TL   
Sbjct: 20  RLPNGKTHRERRKSPFSAKSASLRWGRE--RERHLLIHGLATASEDAGPTKKEVPTLAEF 77

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
              Y +  A       ++  +        +I   GD    +I ++ ++            
Sbjct: 78  APRYMEGYAKANGHKPSTLETKRQVLRLHLIPAFGDKRLDQINSELVQRLKAKLTEHMAN 137

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L  +  + K AV    +   P  +     +          E     K+  ++  
Sbjct: 138 KSINNVLGVLNTMLKCAVEWGVLEELPVRAKRMRVKNPSMDFYDFDEYAALVKAAAAQSP 197

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPD 239
           +  +       +GLR  +        +      +  +               I TV L  
Sbjct: 198 ECLVFVLLGGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRTVPLTR 257

Query: 240 GFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
                L   P   E          +   +        +     A + +   H +R    +
Sbjct: 258 RLADALGALPRDCELVLYRGSEGREIPTSRQTGRTMLEKAQDAAKLRRRGPHTLRHTFCS 317

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             A  GA A  +    G  ++   + Y   +            +        P
Sbjct: 318 HLAMRGAAARVIQQLAGHASLVTTQRYMHLSPGATEA--AIALLEQPAPILKP 368


>gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 400

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 110/365 (30%), Gaps = 50/365 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +GR+ R  +  ++         +  +                LK  +  +       
Sbjct: 31  RDENGRQKRQYFYGKT--RQEVADKIAKALNDLANGIYVEPARMLLKDWLHTWLWEYKKQ 88

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141
           +L  ++   +  Y    I    G +  +++  +H+++          + S+  Q  T + 
Sbjct: 89  TLRPSTFKDYLCYIERHINPTIGHYKLKELRPEHLQTLYNVKYQEGLSISTIKQIHTVLH 148

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
                A++   V  N   +   PK K +        + QQ      E  + + AF   L 
Sbjct: 149 SALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAALERERLKTAFLVELA 208

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------ITVE 236
           SGLR  +      + +      I+ +++                              V 
Sbjct: 209 SGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTALAFQEPKTEAGKRIVP 268

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           LP   ++ L                     +  F       ++   F   F     KAG+
Sbjct: 269 LPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDPRNFERLFYRIREKAGL 328

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           +KS   H +R   AT   +A      +    G K +      Y+     I+     + ++
Sbjct: 329 DKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKA--AAMKL 386

Query: 340 SSVVD 344
           +S+ +
Sbjct: 387 NSLFE 391


>gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
 gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82]
          Length = 218

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 16/200 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           M+  F +  ++  +  +P   ++ PK +    R  T E++       S  +    + +  
Sbjct: 1   MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKELRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            E L  +G+R S+     V  L   +  +          +   +   + L          
Sbjct: 61  LELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRDH 120

Query: 256 FINNDKQKM----------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303
            I+                +   F    K    KAG+    + H +R   A      GA 
Sbjct: 121 LISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGAD 180

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G   +   + Y+
Sbjct: 181 LKSVQEMLGHSDISTTQIYS 200


>gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797]
 gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797]
          Length = 316

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 86/287 (29%), Gaps = 25/287 (8%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRK 127
           +  +         +AVN+  ++ S   Q +            ++    +      +  RK
Sbjct: 25  LEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRK 84

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L ++++ F++ V +  +A +    +  PK      +  + E + Q  +   
Sbjct: 85  LAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPC 144

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE------ 236
                  + R     +  +G R ++     +  ++      +          V       
Sbjct: 145 RQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAV 204

Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289
                       +L      ++  F+N   ++++        K  A + G     S H +
Sbjct: 205 AAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHTL 264

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           R   AT     GA    L    G   +   + YT         +   
Sbjct: 265 RHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQM 311


>gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 374

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 115/366 (31%), Gaps = 39/366 (10%)

Query: 10  FVTKE-RTRHGKIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +  +E + + G    Y R     +I  +    +  T         +       Y N  +K
Sbjct: 4   YFKREFKKKDGTT--YTRWVGEEKINGKTKSVYGKTEKECKAKIKSLILEHEIYGNELKK 61

Query: 67  KPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV 123
              TL      +  +      +  ++   + S ++  I+    G      I    I++  
Sbjct: 62  NIYTLSEWTYKQLYEEVKPH-IQASTFERYMSIYNTHIKNSVIGKTSITDINQIDIQNFF 120

Query: 124 ESRKHTPSSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            S+    +  ++ +  ++R +F++A + + +  NPC+ ++ P  K +          +Q 
Sbjct: 121 NSKNDMATGVLKIMRYTIRRVFEYAKKHDVIRENPCIGIKIPPSKAKTRDIIIMTLDEQE 180

Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
           K   +  ++  +  F   L++GLR  +      +++     +I   ++            
Sbjct: 181 KFIEAASTRDNKALFLTALFTGLRMGELIALKWENVDLKNGTINVCESYKRVRAYTDNGD 240

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             V +P   + +L       E  F N   Q M         K  
Sbjct: 241 SEYIIDKKAPKTKNGNRIVPIPTKLLPILKEIRTDNELVFCNAKGQPMTEITIRREQKRI 300

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGI 333
             +A +   + H +R   AT   + G     +    G   +      Y     D  +  +
Sbjct: 301 CEQAQIRYINFHALRHTYATRLIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAV 360

Query: 334 KNSRRI 339
               + 
Sbjct: 361 NTLDKF 366


>gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10]
          Length = 302

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
              +  +  S+++   +  +         G  + ++   +     +  RK   SS  + +
Sbjct: 19  RHYSELTISSYQTDLLEAKKFWQENGGFDGWKNVQERDIQIYLQNLADRKLVRSSQARQM 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
           +S+   F++  R++++ I+P   +   + + +    +   +++Q             +  
Sbjct: 79  SSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFYGNELKQVFDSLKGNKPLTMRNL 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---- 248
             FE    +G+R S+     ++ +  N+ +I    K      V   D   K L       
Sbjct: 139 ALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAFDDHTKKSLVRYLEDA 198

Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    ++  F++N    ++        +    +AG+      H +R   AT   + 
Sbjct: 199 RPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGKVHPHELRHTFATAMLNN 258

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           GA    +    G  ++   + YT  
Sbjct: 259 GADLRSVQELLGHSSLSATQIYTHV 283


>gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314]
          Length = 300

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 92/296 (31%), Gaps = 23/296 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127
                 +Y  +      + ++  ++     Q+ R            +      + ++   
Sbjct: 6   FYRYFDDYLTALRQEGKSAHTVEAYRRDLSQLERLLMLRPSENGADVRRGDFLAALKKLS 65

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L+  R    W V++  +A +P  +++ PK      +   +E +    +
Sbjct: 66  QRNLSERSMARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPLNHLLN 125

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPD 239
                     + R  FE L  SGLR S+ C       L +  +   T K G    V L  
Sbjct: 126 QGCGEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGVTGKGGKQRRVPLVR 185

Query: 240 GFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRK 291
             +  L      +         F N + +++   Q     +  A + G   + S H +R 
Sbjct: 186 KSIDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KNSRRISSVVD 344
             A+    A      +    G   +   + YTK  D   L     +   R     +
Sbjct: 246 SYASHLLQASRDIRAVQELLGHSNLSTTQIYTK-LDLEHLAAVYDEAHPRAKRKKE 300


>gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407]
 gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407]
          Length = 380

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 115/365 (31%), Gaps = 50/365 (13%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + + G I Y +          G  +R+R    +         S L     +  + +
Sbjct: 2   INQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFNTKKEAKIAESQLLLKVEQDGFFD 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P +   T + +   + +       A             I+   G     KI+    +  
Sbjct: 62  KPDR--ITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQ 119

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWT 175
            +           F+   +++  +AV   Y+  NP   + +P+        + +    ++
Sbjct: 120 AQEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYS 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217
           +ED+Q+F    ++  +  +A  F L  ++G+R S+      + L                
Sbjct: 180 REDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYG 239

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------M 264
             N+I     +   +  T+ L    + +L      ++        +              
Sbjct: 240 ENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPTDLVFPAETGNAH 299

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           +    +   +    K  +   + HG R    ++  +AGA+  E+    G + +      Y
Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359

Query: 323 TKGAD 327
               +
Sbjct: 360 AHVTE 364


>gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
 gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8]
          Length = 331

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 90/318 (28%), Gaps = 41/318 (12%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDY 111
            PK           T L   +S + +        + ++   +      +           
Sbjct: 1   MPKTTQAQDTAPPETPLPDAMSAWLRHLETNRRYSPHTLDGYRRELHFLRELADHAKLPL 60

Query: 112 RKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            KI   HIR  V         P S  + L + R  ++W      +A NP   V  PK   
Sbjct: 61  DKIGNGHIRQFVARLHAQGRGPRSLARTLAAWRGFYQWWAPAIELAGNPVAGVRAPKAPR 120

Query: 169 EGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              +  + E  Q                 + +   E L  SGLR S+     +++ ++  
Sbjct: 121 GLPKALSVEQTQALLDRAPAQVATEPAALRDQAMLELLYSSGLRLSELVGLDLRYERSGN 180

Query: 222 FSIKTQ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262
           +  +              K G   +V +    ++ L      +        +        
Sbjct: 181 YESRGWLSLEEAEVIVLGKGGKRRSVPVGQAALEALRKWIAVRPQLTPFTAQPEDAAALF 240

Query: 263 ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
                 +++     +     A +AGV      H +R   A+    +      +    G  
Sbjct: 241 LGARGRRISPRVVQLQLARIAQQAGVPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHA 300

Query: 315 TVDQAETYTKGADRIRLG 332
            +   + YT+  D   L 
Sbjct: 301 NISTTQIYTR-LDFQHLA 317


>gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
 gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus
           172560W]
          Length = 369

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KEYLNHWLE-IKSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F S   
Sbjct: 125 ITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLSHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    +   + +    F   F     K
Sbjct: 244 TIPVPNETIVALKKHKTLINKEKLRFGSAYLDQDLINCDEFGRIIKRAHFRKSFIRATHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521]
 gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 323

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 98/288 (34%), Gaps = 42/288 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGVE------- 124
              +  +   + +      R                + +   I  + IRS          
Sbjct: 24  KGSSKKTLHVYTTDLILFFRFLKRDRNLVNIDIPFEEIEIYDINKEFIRSIDSSDIYSFL 83

Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 R ++  +  + +  ++  F++   +   +  + C ++ERPK K +      + +
Sbjct: 84  SYTEFERNNSNVTRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPKLPVYLKENE 143

Query: 179 MQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIK 225
                +  +  +  + R      + +GLR S+ C   +  +               +   
Sbjct: 144 CVSLLNNITGRNIVRDRCIITLFINTGLRLSELCSINISSIKDDTLVVLGKGNKERYIYL 203

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +   + + V L     K + +    ++  F++  KQ++N              A ++K 
Sbjct: 204 NESCLSQLEVYLRYRSEKYIPIKEGHEDALFLSEQKQRINPRSVENIVVKAVKSACLDKH 263

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            SAH +R   AT+   AGA    +    G ++V   + YT    D+IR
Sbjct: 264 YSAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIR 311


>gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 317

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D +     +                 S +  +  
Sbjct: 9   VESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIRLTEAASTDLAAYLSSLARKGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L +MR  +K+   +   A +P   ++ PK+     +    E++ +  S    
Sbjct: 69  KPSSQARRLAAMRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLLSRAEA 128

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            ++                E L  +G+R S+      + L       +   K      V 
Sbjct: 129 EAEDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           L    +  L                       F   + +  +    F+   K  A +AG+
Sbjct: 189 LSQSAISALKSYGRLLAVENAAVKEPQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 399

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 111/371 (29%), Gaps = 55/371 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F+         G  +R                 AL     + +  +
Sbjct: 2   IKKYKKKDGSTAYMFQIYLGVDPLSGKKKRTTKRGFKTQQEAK---LALARLQLESKEPD 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
              +   T + + + + +     ++  ++    +      I+   G     KIT +  + 
Sbjct: 59  FITETTKTFEEVCNMWLEQYR-NTVKASTYTIQKVAIDKHILPLFGHIRMSKITIQFCQK 117

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWT 175
            V             +     +F +A+    +  NP   V RPK++            + 
Sbjct: 118 QVNHWFSYYKKYSNLIGITTSVFNYAINIRLLNNNPMDGVIRPKKQQKVDEEDYIAPFYD 177

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217
           +E +  F S   E    +L   F +  Y+GLR  +      + +                
Sbjct: 178 REQLLTFLSVVKENYSEQLFVMFRILGYTGLRKGELHALRWKDIDFDKKTLTVKQTLATV 237

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------DK 261
               +     +   +I T+ L +  + L+    + ++ F                   + 
Sbjct: 238 QNWELVFQPPKTRKSIRTISLDNETLGLIKKWKLHQQKFLFQFGINSLSQEQLLFPSTEN 297

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + +     +        +  + K + HG R    ++  +AG +  ++    G   +    
Sbjct: 298 KPLYLDYLNHNLSKILKENRLPKMTVHGFRHTHCSLLFEAGVSIKDVQERMGHTDIKTTM 357

Query: 321 -TYTKGADRIR 330
             Y    ++ +
Sbjct: 358 NIYAHVTEQRK 368


>gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str.
           Virginia]
          Length = 311

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 81/272 (29%), Gaps = 31/272 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTP-- 130
                 + N+  ++E       R                +++ +   RS +  R      
Sbjct: 18  REERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQ 77

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            +S  + ++ +R  F++   +  +  +   + + P  +    +   +  M++        
Sbjct: 78  SASNARAISVVRSFFRYLHHKCGMKSSVVFNTK-PIVRRSLPKVLEEPQMRKVMEEPEDL 136

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +       L   GLR S++       L+ +       K      + +      ++
Sbjct: 137 HWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELR-VLGKGSKERVIPILPWVRCII 195

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                      ++               +++ T F+   K    + G+ ++   H +R  
Sbjct: 196 DEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHS 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT     GA    +    G  ++   + YT 
Sbjct: 256 FATHLFLEGADIRVVQELLGHASLATTQVYTH 287


>gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 292

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 87/272 (31%), Gaps = 24/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR 126
           I ++     +  + + N+  S +    Q+     +            +  +     ++  
Sbjct: 13  IKDFLYFEEFGNNKSPNTIKSMKKDLFQLAEYLNEIEKVDNCMAIDSVMIRGFIINLQEN 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T  +  + L+S+R  FK+ VR++ +  +P   +  P   T+     T E++ + +   
Sbjct: 73  GITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQKPDILTLEEINKLREVI 132

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           S     G + RL  E L  SG+   +    G      +   +      +   V   +   
Sbjct: 133 SLKNANGLRDRLILELLYSSGITSVEMLGVGEGVFDLDKRELYVSNGKSRRVVFFSERTR 192

Query: 243 KLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +        K+  +                +++           A KAG+ +  S +  R
Sbjct: 193 EFFKRYIKAKKEKYKEKYNPDILFVNGSATRLSDRSLRRIIDRYAVKAGIEREISPYSFR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A      G     L    G  T++  + Y
Sbjct: 253 HTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284


>gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 351

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 92/354 (25%), Gaps = 38/354 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y      +R+R  +      +      L                   L
Sbjct: 4   RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+ ++ +  H  SL+     +     + +    GD        +      + R     
Sbjct: 64  KTLVGQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF 120

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         ++  +    +R +F    R  +      L   R  R++E    +  
Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180

Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           ED  +      + S  +   +     L +G R S++ +     +  N  +    K+    
Sbjct: 181 EDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           TV +     KL+                       F              +  H +R   
Sbjct: 241 TVPISAELHKLIPKMKGRLFANA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           A+     G     L    G  T+     Y+           +     S+   D 
Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339


>gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 293

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 96/301 (31%), Gaps = 38/301 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVE 124
           ++E+     +    + ++ +S+++    +                +Y  + +  +    +
Sbjct: 2   VNEFLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYELSTPEHANYPMLRSWIVTLVDQ 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDM 179
             +  P S  + +  +R  + +  ++E++  +P L +   K K            T    
Sbjct: 62  ELE--PKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLD 119

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234
           +   +   EG + +L  E L  +G+R S+        +     +IK      ++    I 
Sbjct: 120 KFEFADSFEGLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERIIPIH 179

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-------KSAH 287
                              +          N  Q    F  +  +  ++       +S H
Sbjct: 180 DTFITLAKAYTIKKKSESFSNNTEFFVVTNNGEQVYPMFIYRLVRMYLDQVTTVDKRSPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R   AT   + GA  + +    G  ++   + YT           +  ++ ++ D   
Sbjct: 240 VLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH---------NSIDKLKAIFDQAH 290

Query: 348 P 348
           P
Sbjct: 291 P 291


>gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 299

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSGVESRK 127
            + ++ A    L+ ++  ++E    Q +    G         D R++     R+ + +R+
Sbjct: 6   AWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAFLAARR 65

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
              S A    + L  +R L +   ++  V      +V  PK+     +P +         
Sbjct: 66  KQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVS 125

Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
              Q        ++       L   GLR S++       LQ    +++    G       
Sbjct: 126 DEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVP 185

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287
              +  +  + +  L        E  F      K+ A       +   +  G+    + H
Sbjct: 186 LLSVVFDAVEKYRALCPYHLESGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 246 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 288


>gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
 gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM
           16608]
          Length = 297

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
           +  +        + +  +  S+    ++  R   D      +  + +  +R+ +E     
Sbjct: 7   VDMFLDYLRLERNYSPMTVTSYRKDLEEFERFFQDLEEQLSWETVDSDVVRNWMEDMMDR 66

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
               SS  + L+S+R  +++A+R+  V  +P   ++ PKR+    +   + +M++     
Sbjct: 67  GNAASSVNRRLSSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEMERLLEPG 126

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
             +   +    R        +G+R S+      + +         T K      +     
Sbjct: 127 MWTDSYKDVLARTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRDKQRIIPFGRE 186

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + LA     +           F      +M   Q     K   ++      ++ H +R
Sbjct: 187 LAETLAAYRQVRGAAVKGDSAALFRTEKGVRMTDGQVRALVKKHLSRVSTLKKRTPHVLR 246

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   +  A    +    G +++   E YT  
Sbjct: 247 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHT 281


>gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 334

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    R         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
 gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150]
          Length = 312

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 100/289 (34%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRK 127
            IS + ++       + N+ +++                D++  + + I       +++ 
Sbjct: 11  WISTFLEAQSAELDASENTLLAYARDLKDFQDWIARQKLDFQTTSREDIEKYLINCDAQG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
              S+  + L++++ LF++A        NP L ++ P R     +  +++++ +      
Sbjct: 71  LAKSTRARRLSAVKQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDEVDRLLASAS 130

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                 S+ ++     + L  +G+R ++     V   + +   I    K G    V L  
Sbjct: 131 SLGRKDSDRARNTCMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKERLVPLSP 190

Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVN 283
              +  A     ++      +K+                 +   +F +  K  + +AGV+
Sbjct: 191 PAREATATWLNIRDATQKLAEKKGAAPSRFLFPSSGKLGHITRHRFYLLIKEISVQAGVD 250

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    +    G   +   E YT   D  
Sbjct: 251 PSKVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDER 299


>gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 103/367 (28%), Gaps = 37/367 (10%)

Query: 13  KERTRHGKIIY----YFRKGHGRRIRLP-------YPHESTFIPAYMSALTGSTPKREYI 61
           ++  ++GK  +          G R+R               +  A  + +    P R+  
Sbjct: 5   RKWKKNGKEGWEVDIRVTMPDGTRMRERVKSPVTSKSGTLKWAQARETEILVRGPARKEE 64

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               K+  TL     ++ +     +    +++ + ES F   +    D     IT + ++
Sbjct: 65  EPEAKEVPTLAQFWPDFVEGYVNANRGKFSAQRARESIFKHHLAPWHDLPLSAITDEEVQ 124

Query: 121 SGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  + +  +    L  + V+ K AV  + +   PC        K      + +  +
Sbjct: 125 KLKGRLANRSAKTTNNVLVCLSVILKTAVEWKRLPALPCRIRLVKVPKNVKPDFYDEGQL 184

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTI 232
            Q  +  SE +   +       +GLR  ++       +              +     T 
Sbjct: 185 AQLVAAASENTGDLVTVLLGADAGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVGTTK 244

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------ 286
              E      + L    +                       +  +  AG+          
Sbjct: 245 GNAERVVPLTERLRDALLAHRHLAGRRVLTGATDESIRSVMERLSRHAGLPAGTRMKRGK 304

Query: 287 ---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                    H +R    T  A AG     + A  G  +++    Y   +   R  ++  R
Sbjct: 305 EVPRWAGLYHKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVS--ARAPVEAIR 362

Query: 338 RISSVVD 344
            + +   
Sbjct: 363 ALDAARG 369


>gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
 gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b]
          Length = 314

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 37/296 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SR 126
           LI  +          A N+  ++    +  +      G      +TT  +R+ +    SR
Sbjct: 9   LIGAFLDMLAAERGAARNTLDAYRRDLEDYVAHLERTGAEPL-GVTTDGLRAYLATLQSR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T +++ + L+++R   K+     Y A +P   +E P+R+         +++++     
Sbjct: 68  GMTAATSARRLSALRQFHKFLYVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLETA 127

Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231
            EG               +     E L  +GLR S+         ++   F     K   
Sbjct: 128 REGLEDESRAAGERLRAARLYALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGSK 187

Query: 232 IITVELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                +       L +                  F  +  +  +    F+   K  A  A
Sbjct: 188 ERLAPMTPRAKAALTVFRALLAKHAPGLADSHFLFPSDAAEGHLTRQAFARDLKTAAAAA 247

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           G+   + S H +R   A+     GA    +    G   +   + YT   D     +
Sbjct: 248 GLSARDISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAM 303


>gi|253752228|ref|YP_003025369.1| putative phage integrase [Streptococcus suis SC84]
 gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7]
 gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84]
 gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7]
 gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1]
 gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 114/365 (31%), Gaps = 50/365 (13%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + + G I Y +          G  +R+R              S L     +  + +
Sbjct: 2   INQYQLKDGSIRYSYIAYVGIDPLTGKEKRVRKRGFKTKKEAKIAESQLLLKVEQDGFFD 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P +   T + +   + +       A             I+   G     KI+    +  
Sbjct: 62  KPDR--ITFEEVYKIWLEHYKNTVKASTYARQKAQADLHIVPVFGACYVDKISLPMCQKQ 119

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWT 175
            +           F+   +++  +AV   Y+  NP   + +P+        + +    ++
Sbjct: 120 AQEWFKGYKKYANFIGMTKMVLDFAVNLGYIHDNPMKKIIKPRKSSEVDEEEKKKENFYS 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHL---------------- 217
           +ED+Q+F    ++  +  +A  F L  ++G+R S+      + L                
Sbjct: 180 REDLQKFLDCVAKEDKEEIACIFRLLAFTGMRKSEVLALRWKDLDLFTSRLSVSQIVAYG 239

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------M 264
             N+I     +   +  T+ L    + +L      ++        +              
Sbjct: 240 ENNSIVYQTPKTKKSKRTITLDPITVSILKKWEKTRQFLNFPQRVKPTDLVFPAETGNAH 299

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           +    +   +    K  +   + HG R    ++  +AGA+  E+    G + +      Y
Sbjct: 300 SFDYINYNLRCILKKYDLPYITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIY 359

Query: 323 TKGAD 327
               +
Sbjct: 360 AHVTE 364


>gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
 gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus
           95/8201]
          Length = 369

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  EDYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDRG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F     
Sbjct: 125 IANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                     +    N     +    F   F      
Sbjct: 244 TIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHN 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AGV     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 AGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19]
 gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33]
 gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94]
 gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99]
 gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99]
 gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365]
 gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445]
 gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19]
 gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti
           str. Cudo]
 gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus
           str. 2308 A]
 gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99]
 gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 341

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+         +   R    I+ 
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329


>gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510]
 gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510]
          Length = 376

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y ++      + ++  ++ +YF +  +     + R I  + I + +    ++R  +    
Sbjct: 98  YAETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 157

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + S++  F     +       C  V+R KR+       +KE+++          +  
Sbjct: 158 NLRINSIKFYF----EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 213

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248
             F  L  +GLR S+        +  +     ++  K        L    ++ L      
Sbjct: 214 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKL 273

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              +E  F     +    +  S   K  A +AG+ K    H +R   AT   + G     
Sbjct: 274 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 333

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +   E Y   AD
Sbjct: 334 VKELLGHNQLKTTEMYVHIAD 354


>gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
 gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10]
          Length = 356

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 93/267 (34%), Gaps = 16/267 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTP 130
              +++       + ++  ++   F Q++         +++ + +R+      E+ K + 
Sbjct: 85  FKRFQEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHPVNELSPERLRAYFLYCHENLKLSE 144

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S     + +++  F     Q          + RPK+K +  +  +K ++++      E  
Sbjct: 145 SEIHSRINAVKFYF----EQVLHRHKMFFDIPRPKKKQQLPKMLSKAEIKKIILSV-ENP 199

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248
           +  +  +     GLR S+     +  +      ++ ++          LP+  +  L   
Sbjct: 200 KHLMILKVCYGMGLRVSEVVALKLTDIDGAGKRVRIEQAKGKKDRITVLPESLLPELRAY 259

Query: 249 PIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +         + Q     +       FK    KAG+++    HG+R   AT   + G  
Sbjct: 260 YLAYRPKTFLFEGQHGGQYSVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTD 319

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
              +    G  ++   + YT   D  +
Sbjct: 320 IRFIQELLGHNSIKTTQIYTHVTDIAK 346


>gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%)

Query: 14  ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++G+  + F          G+ IR       +   A   AL       +     +  
Sbjct: 7   YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V   
Sbjct: 66  VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184
             T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F  
Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225
              E +  +L   F L  Y+G+R S++     + +     +                   
Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALGLQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270
            +   +  T++L D  +K L +    +    I       +  QF               +
Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     
Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364

Query: 328 R 328
           +
Sbjct: 365 Q 365


>gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649]
 gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649]
          Length = 299

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---- 129
           +         L+ N+  ++     +        G  D  K+T +H+   +   +      
Sbjct: 4   WLTHLDVERGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDEDH 63

Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA + L S+R L K+   +  V  +P  +V  P   +   +  +  ++++  + 
Sbjct: 64  PALAANSAARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLLNA 123

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
            + G      + +   E L  +G R S++    +  +  +   ++   K G    V L  
Sbjct: 124 AAVGDTPASLRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQRLVPLGS 183

Query: 240 GFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                L    +                F+N    +++        +A A +A +  + S 
Sbjct: 184 YARTALTAYLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADLSGHLSP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G  +V   + YT
Sbjct: 244 HTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 280


>gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 305

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120
           + E+         ++ ++  ++      ++  + +              D  ++ + H+R
Sbjct: 4   VDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLR 63

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157]
          Length = 316

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VESRK 127
            IS + ++       A N+ +++                 + +     I +     +++ 
Sbjct: 10  WISAFLEAQAAELGAATNTLLAYGRDLKDFAGWLSRHGAGFAQADQARIEAYLIDCDAQG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L++++ L+++A  + +   NP + ++ P R+    +     ++ +      
Sbjct: 70  LSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKGPGRQKRLPKTLDVAEVDRLLQAAR 129

Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
           +  + +          E L  +G+R ++     V   + +   +    K G    V L  
Sbjct: 130 QTGRTQADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVLGKGGKERMVPLSP 189

Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                LA                     +  F        +   +F +  K  A   GV 
Sbjct: 190 PARDALAAWLGARDAVEEASVAKGGQRSRFLFPSRGKSGHLTRHRFFLLVKELAVCGGVS 249

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 250 PEKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298


>gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 393

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 120/368 (32%), Gaps = 40/368 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-------------- 46
            L+ P  + +++   G I  Y   ++ G  ++  L          A              
Sbjct: 9   RLKEPVRIREKKIAGGNISLYLDIYQNGLRKKETLKLYLVPEINAATKLQNANTRKLAEQ 68

Query: 47  --YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103
                 L          +  +K   TL   + ++ K  A     ++ ++ +  +  DQ +
Sbjct: 69  IKAQRILDIQREGLVDWDKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYL 128

Query: 104 RKSGD--FDYRKITTKHIR----------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              G   F  + +  +  +               ++ + ++   F+         A+R  
Sbjct: 129 LYIGKPEFLLKDVDKEFCKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAIRDG 188

Query: 152 YVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +  NP     + E+P+++       T E++++  +        + AF F  ++GLR SD
Sbjct: 189 LIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSD 248

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINNDKQKMN 265
                   +               +  +         +     P  +E          + 
Sbjct: 249 MKTLNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLTIT 308

Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +T   +  K     AG++K    H  R  +AT+    GA+ + +    G K++   E Y 
Sbjct: 309 STTVEVVLKEWMEVAGISKHITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYA 368

Query: 324 KGADRIRL 331
           K  D+ +L
Sbjct: 369 KIVDKKKL 376


>gi|228932649|ref|ZP_04095524.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228827021|gb|EEM72780.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 369

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 115/368 (31%), Gaps = 43/368 (11%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + G   YY     K +G+R +       T   A  +         +            
Sbjct: 5   VKKDGNSWYYVLELGKVNGKRRQKKKRGFKTKREAQNALTEVEHALLKDGTFSEPSKMLY 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           K  ++ + +      +  ++  ++       II   G+ +  KI    I+       +  
Sbjct: 65  KEYLNSWLEDKRIL-IKESTFKTYSWLINKYIIPNLGNIELSKIRPIDIQKLYNEIINNN 123

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +  +  + +    K A R   +  N    V+RPK     ++ W   +++ F    
Sbjct: 124 LLSRENVQKIHSLINDSLKKAERWGLIKCNVASLVDRPKAYKSELKVWDIGEVKSFLKVA 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
            E S+  +AF   L +G+R  +      + +  N  ++  ++T                 
Sbjct: 184 -ESSRYYIAFLLALTTGMRQGEILALRWKDIDFNNNTLSIKQTLNHAGNKIIAGAKTKSG 242

Query: 232 IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
             ++ LP+  +  L                     +     N             F +  
Sbjct: 243 QRSIALPNETINFLVKHKETIDNEKRVAGILYTHHDLVVCTNIGTPCLPRNLLRSFYSLI 302

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
            K  + K   H +R   AT+    G     +    G   +    +TY+     ++L  + 
Sbjct: 303 EKIDITKIRFHDLRHTHATLLLKEGVHPKVVAERLGHSNIRVTLDTYSHVLPSMQL--ET 360

Query: 336 SRRISSVV 343
           + +I++++
Sbjct: 361 ANKINNLL 368


>gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 289

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 12/269 (4%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              TLK               + ++  S+     + +    +     +T   ++    S 
Sbjct: 11  VEITLKQASER-LLEMWLDGHSPHTVDSYRRSARRFLDFV-NKPLHLVTLADLQLWRASL 68

Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            H  PSS    + +++ L  +  +   +  N  ++++ PK K         E+       
Sbjct: 69  THLAPSSQGTAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIA 128

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELP 238
                + R+    L   GLR S+ C    + L++   S +    G         +   + 
Sbjct: 129 NEPDERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFGKGGKTRTVLLPSGVW 188

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
               ++   +      F        ++ TQ     KA A++AG+    S H +R   A+ 
Sbjct: 189 QELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHASH 248

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
           S D GA  H + AT G  +V   E Y   
Sbjct: 249 SLDRGAPLHLVQATLGHSSVATTERYLHA 277


>gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
 gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock1-15]
          Length = 369

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYKAAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKTTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSIYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
 gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 83/279 (29%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++ + +    D++I    +          I+      + +    
Sbjct: 5   LEAYCAHLRSERQVSEHTLLGYRRDLDKVIAYCKEQGIADWQALQIQQLRQLVARLHHHG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
               S  + L+++R L+++  R+     +P   +  PK + +  +    +   Q      
Sbjct: 65  QASRSLARLLSAVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRALQLLDGGV 124

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  + +   E    SGLR S+     + HL           K G    + +     
Sbjct: 125 DDDFIARRDQAMLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAR 184

Query: 243 KLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L                 FI     +++        KA   +  G +   H +R   A
Sbjct: 185 EALKEWYRLRGIGNPRDRAVFITRQGNRISPRTVQQRVKAVGERELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 307

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 81/289 (28%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
           +  +  +          A ++  ++ +     +        G      +T   +      
Sbjct: 10  RDALEAWLTQLRALDGAADHTITAYSADVAGYLSFLSLHRGGTEGLAALTAVPLADLRAW 69

Query: 126 RKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             H      +P S  + L++++    W   +E       LS   PK + +  RP + +  
Sbjct: 70  MAHEKGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARAPKFRRKLPRPLSVDAA 129

Query: 180 QQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                            ++       L   GLR S++                T K G  
Sbjct: 130 ADVLDRVGDQSLEPWIAARDAAVVTLLYGCGLRISEALGLTGATHPLPEVLRITGKGGKQ 189

Query: 233 ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             V +       +A                F       +N  Q ++  +    + G+   
Sbjct: 190 RLVPVLPAARAAVARYVSLCPFELAATGPLFRGARGGALNPRQIALVMEKTRAQLGLPAS 249

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            + H +R   AT    AG     +    G  ++   + YT   D  RL 
Sbjct: 250 ATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYT-AVDTQRLM 297


>gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 324

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 20/281 (7%)

Query: 65  RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121
           R+ P  ++ L+  + +        A N+  ++ +      R              + +  
Sbjct: 3   RRPPDEVERLLDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREGVSLLDFDGEALTP 62

Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +E R   +  S  +FL+S+R   ++      V  +P  +   P+      +  ++++++
Sbjct: 63  YLERRGDLSVRSRARFLSSVRAWTRFL-ELSGVRKDPRETPPAPRLPRSLPKILSQDEVE 121

Query: 181 Q----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235
           +          EG + R    F   SGLR S+        +     +++    G      
Sbjct: 122 RLIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKERIA 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--NKS 285
            L +    LL+         F     +         +         K     AG+    S
Sbjct: 182 FLDERTRHLLSDYLTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGITSPLS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   + G     +    G + +   E YT  +
Sbjct: 242 PHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVS 282


>gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
 gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05]
          Length = 319

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 84/282 (29%), Gaps = 30/282 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFDYRKITT------KHIRSGVESR 126
           I  +         L+  +  ++ S           +   + ITT      +     +   
Sbjct: 22  IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYIRTLNEL 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
                +  + L S+    ++ +    +  +    V+ PK+        + E++ +     
Sbjct: 82  GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                  +   +     EFL  +G R S++     + +  N   +K T K      V + 
Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201

Query: 239 DGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              ++ L                    T F+N     ++             +A ++K  
Sbjct: 202 GCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLDKPL 261

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   AT     GA    +    G  +V   + YT  +
Sbjct: 262 HPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303


>gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 383

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 114/376 (30%), Gaps = 52/376 (13%)

Query: 13  KERTRHGKIIYYFRKGH------------GRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           + R  HG+   Y ++              G+R R  Y +  +   A          + + 
Sbjct: 4   RRRRAHGEGSVYEQRPGVWAAVIDLGWIDGKRKR-KYVYAKSEAEAVRK-RDELRRQLQL 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
                 +P T++  ++E+ +          ++   +       ++   G     ++T + 
Sbjct: 62  GVDLTAQPRTVEAWLTEWLRDVKAHDGTRPSTLARYRLAVTKHLVPGLGRVKLDRLTPRE 121

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           ++  +   +    P+S I+    +RV    A R + VA N   + + P       R  T 
Sbjct: 122 VQRFLTGLRGKLAPASIIKVHAVLRVALADAERMDLVARNVAKAAKPPALGRVERRALTP 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------- 222
           E+ +Q  S  + G +    F   L +GLR ++        +                   
Sbjct: 182 EEAKQLLSVLT-GDRLESLFVLALATGLRRAELLGLRWSDVDLPGKALFVRQTVQRTDRG 240

Query: 223 --SIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNA 266
              +  +   +   + L    ++ L                        F +     M  
Sbjct: 241 LEFVPPKTHRSSRPLPLSALAVRALEAQRVRQARERLAAGELWSDLGLVFASTIGTAMEP 300

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
              +  F+     AG++    H +R   AT   D G     +M   G  T+     TY  
Sbjct: 301 RNVNRRFEQLRAAAGLDWLHLHDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTYGH 360

Query: 325 GA-DRIRLGIKNSRRI 339
               R R       R+
Sbjct: 361 VLPARARQAASAIDRV 376


>gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9]
 gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9]
          Length = 295

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 90/283 (31%), Gaps = 19/283 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  ++            +  ++     +I +   D     +TT  ++    S    H+ S
Sbjct: 12  LYEQHLYQLTAAGKRPATIDAYSRAVRRISQFF-DRCPDAMTTADLKQYFASLIQTHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + +E+  ++       P +  +     T + +       ++  +
Sbjct: 71  TVKLDRNGLQFFYRHTLEKEWQWLDIVK----PPQSKKLPDIITAQQVAL-LISMTKQKR 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
            ++ F  L   GLR  +     V  +  +     I+  K G    V +P   +  L    
Sbjct: 126 YQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 185

Query: 250 IGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +              N    M+        K      G+NK  S H +R   AT   + G
Sbjct: 186 LTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQG 245

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343
                L    G  +++    YT+    + R       R++  +
Sbjct: 246 LDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 288


>gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 317

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 83/289 (28%), Gaps = 34/289 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
             L+ EY         L   S  +++   +         +   +T +          +  
Sbjct: 11  ASLLREYMTHLRVERGLRPLSCEAYQRDLEMFAEFLEGANATLLTARQESVSGFMQHLRE 70

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
                 S  + L+ +R  ++W +  + +  +P +++E P       +   + ++ +    
Sbjct: 71  HGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLPKSLAETEVNEMLER 130

Query: 185 ---------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIIT 234
                          +     E L   GLR  +      + L+  +       K      
Sbjct: 131 TGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLESASVQVRGKGDKERI 190

Query: 235 VELPDGFMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGV 282
           V +    ++ L           +                  +   +     ++  + A  
Sbjct: 191 VPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQKVWQMVRSVNSHA-- 248

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             S H +R   AT   + GA    +    G   +   + YT  A DR++
Sbjct: 249 --SPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLK 295


>gi|319760989|ref|YP_004124926.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317115550|gb|ADU98038.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 454

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 25/358 (6%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P    + T HG+      Y    G  R+ ++    E T   A   A       R+  +  
Sbjct: 29  PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGDDPS 88

Query: 65  RKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
             K       T+K L  ++ +          +  S++ Y    I+   G      +T  H
Sbjct: 89  AAKLAARMAPTVKELCEQFIEEYSRPRNKPRTVDSYQGYIDRHILPALGKLKVPDVTRAH 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I + ++ +     +A + L  +R +F  A    Y           PK + +G   +   +
Sbjct: 149 ITTLMKDKARIGVTANRVLACLRKMFNMAEVWGYRPDGSNPCRHVPKYREDGETRYINNE 208

Query: 179 MQQFKSFWSEGSQP------------RLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIK 225
                  + + +              RL FEF    + +R  +      ++ +      K
Sbjct: 209 ELARLYAYLDRADAQGLEHPTVTLAVRLQFEFSARMTEIRTLEWAWVDFENRRVVWPDSK 268

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           T      ++            +         I + K+ +  + +   +K    +A V + 
Sbjct: 269 TGDMSKPMSEAAYQLLRNAPRIDDSPYVCPAIFDAKKPLPDSTYYNGWKRILGRAEVAHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341
             HG+R  +AT  A++G      MA    KTV Q   Y    D  +R   +    +  
Sbjct: 329 GTHGIRHRAATDIANSGIPIKVGMALTAHKTVTQFMAYVHAEDDPVRAAAEKVATLRR 386


>gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 341

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+  +      +        I+ 
Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329


>gi|134283292|ref|ZP_01769993.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217424779|ref|ZP_03456276.1| phage integrase family protein [Burkholderia pseudomallei 576]
 gi|134245487|gb|EBA45580.1| phage integrase [Burkholderia pseudomallei 305]
 gi|217392235|gb|EEC32260.1| phage integrase family protein [Burkholderia pseudomallei 576]
          Length = 348

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 108/340 (31%), Gaps = 22/340 (6%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G      RK       +           +         +  Y++    +  T+   +  
Sbjct: 9   SGNWKAIVRKNGWP-TTIKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAALKR 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136
           Y +          ++ S       +    G +    ++ + +    + R     S     
Sbjct: 68  YMEEVSITK-KATTQRSERFTSQHLAAFFGKYSMAAVSAELVAKYRDERLAAGKSNNTVR 126

Query: 137 --LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             L  +  LF+ A+++  +    NP  ++ +P       R  T E+ Q+  +     S P
Sbjct: 127 IELAMLGHLFRVAIQEWGIGLTFNPVANIRKPSPGAGRDRRLTPEEQQRLFAAADAHSNP 186

Query: 193 RLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
            L +   L   +G+R S+        +  N   +     K G++  V L    +++L   
Sbjct: 187 ILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDTKNGSVRLVPLTRVAVEILRSA 246

Query: 249 PIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                         F       K     F   + +    AG+ +   H +R  + +   +
Sbjct: 247 LDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQTAGLADLHFHDLRHEAVSRLVE 306

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AG +  E+ +  G K++   + YT    R    ++   R+
Sbjct: 307 AGLSDQEVASISGHKSMQMLKRYTHL--RAEDLVEKLDRL 344


>gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1]
 gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168]
 gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1]
 gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168]
          Length = 334

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    R         +        +     +  +          EG   
Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLEGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIRTRETGN 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|218783046|ref|YP_002434364.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764430|gb|ACL06896.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 408

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 98/375 (26%), Gaps = 45/375 (12%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTT 70
           +  R  ++ Y+  +R   G++ R           A          +   +     ++  T
Sbjct: 29  KAKRSKRVRYWIAYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMT 88

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123
            + L   Y        L    R   E          G    + I    +           
Sbjct: 89  FEDLAKWYLALPKVNGLKSFWR--IEMNLKTFNETFGKTKIKNIMAVDLEKFQVDGLAQG 146

Query: 124 ---------ESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERP 164
                    E +K   +S         Q LT  R +   A   + V    +     V+  
Sbjct: 147 FKKRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNL 206

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +      R       +  K   +  +  +       Y+G+R  +        +      I
Sbjct: 207 QGGNANARDRVLTHDEFEKIMANLPAHAKPIIATAYYTGMRSGEIFPLTWDRVDLKERVI 266

Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +      K      V + +   ++L+  P    T  +     +          K  A KA
Sbjct: 267 RLEAADTKDKEPRVVPICNELYEVLSGLPRAIHTDNVFLRYGEPIKK-LRNSLKEAAKKA 325

Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRL 331
           G+          + H  R    T    AG     +M   G  T    + Y T  AD  + 
Sbjct: 326 GIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDAKN 385

Query: 332 GIKNSRRISSVVDSD 346
            +         VD +
Sbjct: 386 AVNIMSSFLQPVDQN 400


>gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107]
 gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107]
          Length = 311

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  + ++         A  N+  ++     + +           G     +I+T  +R+ 
Sbjct: 14  RDALEQWLAGLAALQGAAENTITAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAW 73

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
           + + + T + A    + L++++  + W   ++       LS   PK + +  RP  ++  
Sbjct: 74  MAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAA 133

Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 ++   +     ++       L   GLR S++                T K G  
Sbjct: 134 RAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGADAPLPAVLRITGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK- 284
             V +       +                                        + G+   
Sbjct: 194 RIVPVLHAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLIRSAMAQARAQLGLPAS 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   +AG     +    G  ++   + YT   D   L  
Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 302


>gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354]
          Length = 299

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 23/274 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH-- 128
           ++ +         L+ ++  ++    ++++ ++   D     ++    +R+ +  R+   
Sbjct: 2   LARWESHLATERRLSPHTVRAYIRAAERLLEETPATDWQGVARLGAPALRAQLARRRADG 61

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------ 181
            +  SA + L+++R    +A  +          +  P+ K    RP T ++         
Sbjct: 62  LSNRSAARELSALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLAERIG 121

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +     G + R     L  +G+R  ++     +H Q       T K G      +   
Sbjct: 122 EERREEWTGLRDRAVLLLLYGAGMRLGEALSLTGEHAQIGETIRVTGKGGKTRVAPILPA 181

Query: 241 FMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
               +A                F       ++             + G+    + H +R 
Sbjct: 182 IRSAIAAYVAACPHDLAPDKPLFRGQRGGPLSPGLVQKAMAQVRGEIGLPANATPHALRH 241

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT    AGA    L    G  ++   + YT+ 
Sbjct: 242 SFATHLLGAGADLRSLQELLGHASLGSTQIYTEV 275


>gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
 gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens
           NRL30031/H210]
          Length = 316

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 93/271 (34%), Gaps = 17/271 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHT 129
             + +  Y K+      + ++  ++     +++R   D     + T +   + ++     
Sbjct: 25  FAFHLERYLKTLLQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQK 84

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               SS  + L+  R    W V+ E +  +P  +++ P+      +   +E +       
Sbjct: 85  GLSESSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHA 144

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241
                   + +  FE +  SGLR S+     +  +  +  +     K G    V L    
Sbjct: 145 PVDDELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPLVAKS 204

Query: 242 MKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +  L           G++  F N +  ++   Q     +A A + G   + S H +R   
Sbjct: 205 IAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSY 264

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT    A      +    G   +   + YTK
Sbjct: 265 ATHLLQASGDIRAVQELLGHSNLSATQVYTK 295


>gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida
           LFI1238]
 gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238]
          Length = 303

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH 128
           K L + Y    +   L++ ++ +++     I     + G   ++ +    +R        
Sbjct: 11  KHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMR 70

Query: 129 TPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   A    T +      F + V +  +  NP   V  P++     +    ++M Q    
Sbjct: 71  SGLKASSLSTRLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEV 130

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
             +     + R   E +  +GLR ++     V+ +Q     ++          V      
Sbjct: 131 NEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSGKA 190

Query: 242 MKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            + L      +       +K         +++             K GV  + S H +R 
Sbjct: 191 KEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVNSHISPHKLRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++      +    G + +   + YT   D   L 
Sbjct: 251 SFATHMLESSGNLRAVQELLGHENISTTQIYTH-LDFQHLA 290


>gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
 gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis
           L2-32]
          Length = 389

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 107/342 (31%), Gaps = 38/342 (11%)

Query: 11  VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + +  T+ GK     +RK  G               A+ +A   +         P+    
Sbjct: 5   IRQYTTKSGKRYEVRYRKPDGSSTGRRGFKRKMDADAWGAANVTAAKSVGAYIDPQAGRR 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
            ++     +  +    +   +   S E  +   +  + G  + + IT   ++  V     
Sbjct: 65  LVEDFWEPWLAAKKTKA-KPSYIKSLEDAWRVHVEPQWGMREMQSITRDEVQRWVTDLAG 123

Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA   + +   +R L + A     +  NPC  +E P+++       + +++ +    
Sbjct: 124 R-RSASVTIRAENLLRSLMERAKADRCIHDNPCDGIELPRKQVRKHVYLSADELSRVAMQ 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
                        L   G+R  +     V+ +      +   ++ T              
Sbjct: 183 CGWREP---IVLTLGLCGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDPKTH 239

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKA 280
              +V  P     LLA    G+ +                    N T+   WF     +A
Sbjct: 240 DGRSVMFPLVLRPLLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVALRRA 299

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           GV++   + H +R  +A++   +GA    +    G K+    
Sbjct: 300 GVDRGHMTIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMT 341


>gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
 gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2]
          Length = 313

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 67  KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG- 122
              T+   +  + ++         N+++++           G     +   +  H+ S  
Sbjct: 4   TNQTMARWVQVFLEAQAAELDATTNTQLAYARDLQDFAGWLGPKGLHFSDASRDHVESYL 63

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              E+     S+  + L++++ L+++A  + +   NP + ++ P R+    +  + E++ 
Sbjct: 64  IDCEAEGLAKSTRARRLSAIKQLYRFAFEEGWRDDNPAIQIKGPGREQRLPKTLSIEEVD 123

Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235
           +          E  +     E L  +G+R ++     V   + +   +    K      V
Sbjct: 124 RLLDAARNTPKEALRNACLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERLV 183

Query: 236 ELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            L       LA                  P  K  F        +   +F    K  A  
Sbjct: 184 PLSPPARAALATYLTARDKAEDAGRKDGKPASKFLFPSRGKSGHLTRHRFFGLIKEFAVA 243

Query: 280 AGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            GV     + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 244 GGVSPAKVTPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDER 296


>gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 380

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 48/361 (13%)

Query: 14  ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++G+  + F          G+ IR       +   A  +        +E        
Sbjct: 7   YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEAQTALNRLLVDFKEKQEFKINV 66

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V   
Sbjct: 67  -TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKS 184
             T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F  
Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEDEQPLKFYTKDQLQLFLQ 184

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225
              E +  +L   F L  Y+G+R S++     + +     +                   
Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTVTIGKTIAQDEFNHVVLQV 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270
            +   +  T++L D  +K L +    +    I       +  QF               +
Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     
Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364

Query: 328 R 328
           +
Sbjct: 365 Q 365


>gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
 gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174]
          Length = 378

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 113/382 (29%), Gaps = 43/382 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKR 58
           M+        + K +    +  Y   +    +I+  Y +  T+    + +  +       
Sbjct: 1   MSRKG---ENIYKRKDGRWEGRYCKTRDESGKIKYGYVYARTYTDTKSKLELVKKECLSL 57

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
              ++      T   +  E+        L   S   + +  +  ++    + D   IT +
Sbjct: 58  PEKSTGNFSIHTFADVAGEWLLYKK-RILKETSISKYNNIINIHLLPFFREQDIHNITLE 116

Query: 118 HIRSGVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            + +   +   T         P + +  L+ M+ +  +A  ++Y+ I P L  E      
Sbjct: 117 QMEAFYNALLMTKTAKGTALAPKTTLDILSVMKAILFYATTKKYMNILPVLRFEYRAVPK 176

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           + +    +             +   L     +Y+G+R  ++C    + +      I   K
Sbjct: 177 KLVVLSGRNQKILSTYLCLNLTYRNLGLLICMYTGIRLGEACALTWEDISLTEGYIYIHK 236

Query: 229 TGTIITVELPDGFMKLLAMTP------------------------IGKETFFINNDKQKM 264
           T   I  E       ++   P                          +      + ++ +
Sbjct: 237 TMQRIQKEHNGKKTMIIIAEPKTQSSIRTIPLPRQLIQLIKSSKLPMQGYLLTGSYERYI 296

Query: 265 NATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
               +   FK    +  + ++  H +R   AT   + G     L    G   ++     Y
Sbjct: 297 EPRNYQYHFKKILQQCKIPQTNFHTLRHTFATRCVELGFDVKTLSEILGHSNINITLNRY 356

Query: 323 TK-GADRIRLGIKNSRRISSVV 343
                +  +  +    ++ +V 
Sbjct: 357 VHPSFNLKKQNMNKMNKLIAVK 378


>gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
 gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1]
          Length = 328

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 34/289 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP- 130
           I  + +        A N+  ++    +                TT+ IR+ V        
Sbjct: 23  IETFLEMMAVERGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATTEDIRAYVGRLAARGF 82

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             +S  + L+++R  +++   +     +P   +E  +RK    +  +++++ +       
Sbjct: 83  AETSRSRRLSALRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLLDRAAA 142

Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
                          ++     E L  +G+R S+        L+     I  +       
Sbjct: 143 EAVDPERSPAGLVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGKGDKER 202

Query: 234 TVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            V + +     L                   F   ++   +    F+   KA A + G+ 
Sbjct: 203 MVPIGEAARDALIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAAREGIP 262

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 263 AERISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEER 311


>gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 390

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 119/383 (31%), Gaps = 59/383 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYI 61
           + K + ++G I Y F+         G  R               AY   +          
Sbjct: 2   IKKYKKKNGTIAYMFKAYLGIDPVTGKKRYTTKRGFKTQREAKQAYSRLMVKVQENDVVT 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           +S +        L  E+ K     ++  ++ +         I+   G+    KIT    +
Sbjct: 62  DSNKL----FSELAEEWMKQYK-NTVKESTYVVQRLAMEKHILPIFGELKISKITIPFCQ 116

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRP 173
             V +     +     +     +FK+A+    V  NP   + RPKRK +           
Sbjct: 117 KQVNNWYSYYTKYSNLIGLTSSVFKYAISLRLVRSNPMNGIIRPKRKKKIDEEAFVAPYY 176

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------- 218
              E ++      +        F  L ++GLR  +      + +                
Sbjct: 177 AKDELLEFLDIVKAFPEPIYPMFRILAFTGLRKGELLGLRYKDIDFQNKTLSVKQTLATV 236

Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----------------D 260
               +     +   ++ T+ L D  +K++    I ++ FF+ +                +
Sbjct: 237 DGWKLEFQVPKTEKSLRTISLDDETLKVIKKHMIKQKAFFLEHGLKTKENGEQLLFATFE 296

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +       +   +    +  + + + HG R    ++  ++GA+  E+ A  G   +   
Sbjct: 297 NKPYYLDFVNHNLERIIKEHNLKRITPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTT 356

Query: 320 E-TYTKGADRIRLGIKNSRRISS 341
              Y   +   R   + + R ++
Sbjct: 357 MDIYNHLS--KRQTEETANRFAN 377


>gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii
           NGR234]
 gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234]
          Length = 313

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 31/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KH 128
           +  + +        A+N+  S+E      +             T   ++  +        
Sbjct: 9   LEAFLEMMSAERGAAINTLQSYERDLRDALAFLRSSGARLNSATADDLKRYLSHLAGEGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---------- 178
             SS  + L+++R  +K+   +     +P   ++ PK+     +  + +D          
Sbjct: 69  KSSSQARRLSALRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLIGQAEA 128

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
                        +     E L  +G+R S+        L  N   +  +  G       
Sbjct: 129 EAAAGGEDAFARLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNKERLVP 188

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                   +      ++  A        F  +     +    F+   K+ A +AG+    
Sbjct: 189 LSQAAIRAMRTYGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARAGIRVAV 248

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER 294


>gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1]
 gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1]
          Length = 353

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 110/364 (30%), Gaps = 40/364 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M+        V       G+    F         +RI     +       Y         
Sbjct: 1   MSAEKEKIKGVY-----TGRWNARFTIKLLNNKSKRIFKRGFNSKKEALEY--------E 47

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           K+  +++        K  +++Y +      +   + ++  +  + I     +     IT 
Sbjct: 48  KKVILDNSLGSNIPFKVAVNQYLEFKKLR-IKELTYMNMSNILNSI-TYFDNLLISDITA 105

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             + +       K+  SS       +++LF W VR + +A NP   V+R K +T+     
Sbjct: 106 IQVSNFQNDLLKKYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDI 165

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
              D              +L F+ L ++GLR  ++    +  +  N  +I   K+ T   
Sbjct: 166 ITVDEFNQIIKQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTHLS 225

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-A 277
                           +++ D  +  +            +N   + N   +   FK    
Sbjct: 226 GKSIITTPKTKGSIRVIKIDDVLLSEIKDYIDKASYILEDNFIFRFNKASYRYNFKNATI 285

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335
              G +   H +R   A+   + G     +               Y+    D+    IK 
Sbjct: 286 KVLGRDLRVHDLRHSHASFLINNGVDILLISKRLEHSNTAMTLNVYSHLYPDKESEAIKL 345

Query: 336 SRRI 339
             ++
Sbjct: 346 INKL 349


>gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53]
          Length = 323

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 28/292 (9%)

Query: 71  LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR 126
           +   + +Y             +  S++    +               I  + I+S +   
Sbjct: 3   IHEALQDYLHYIQAVDQKALATIHSYQQDLQEYEVWLIGKHKQVMEDILPQDIQSFLSEL 62

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       SS    LTS+ +  ++   Q    ++P + +   K++ +    +   D
Sbjct: 63  EDGQKGEDGRKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHD 122

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +++    + E  +    +   E L   GLR S+ C   +  +      ++          
Sbjct: 123 IERLLDSFGEDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRVIGKGDKERM 182

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN-- 283
           V +    +  L +        +      ++                  K +     ++  
Sbjct: 183 VPMHKRCVLALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQRLHMLNLDER 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIK 334
            SAH  R   AT   D GA    +    G + +   + YT   +R  +  I+
Sbjct: 243 LSAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIE 294


>gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 278

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 82/254 (32%), Gaps = 13/254 (5%)

Query: 77  EYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSS 132
           E+ +S   +   +  +  S++    + +R        + T   I       K +   P +
Sbjct: 11  EFLQSLEDFRGYSELTIKSYDEAITEALRYVEI--IEEDTHTTINLMPYRIKISQLNPKT 68

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L+++R   K+    +        + E  K      +P + + + +           
Sbjct: 69  ISKKLSAIRTFVKYLNDNKI--KIYLKADESVKVAKTLPKPISHKHILEALEH--AEFYE 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PI 250
           R     L   GLR S+     +  + +        K      V L     +L+       
Sbjct: 125 RFVVTMLYSLGLRISELASLKLSDISDEWIR-VLGKGNKHRDVPLLRTTRELIDEYLSNN 183

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
             + F    + ++++             + G+  + H +R   AT   ++ A   ++   
Sbjct: 184 CPKIFLFEANDERLSENSLRYTVNKVFKRVGLKVTPHQLRHSYATALLNSSAPIADVSEL 243

Query: 311 YGWKTVDQAETYTK 324
            G  ++   + YTK
Sbjct: 244 LGHSSMATTQIYTK 257


>gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 329

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 99/320 (30%), Gaps = 57/320 (17%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISF-----------------ESYFDQIIRKS-------- 106
               ++ +      + + ++  ++                 ES  + I  K         
Sbjct: 4   AACYQFLEHLKVVKNASEHTIRNYAIDLNLFKNYQEKQIFAESKLEHISPKICARESYQQ 63

Query: 107 ------GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                 G      I  K IR  +      +    +  + L+S+R  F++   Q  + INP
Sbjct: 64  RQSCHDGILKLEDIDRKTIRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQNLIQINP 123

Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
              +E PK   +     + E      +Q  +    G + R   E    SGLR S+     
Sbjct: 124 TEELESPKLNKKLPVSLSYEQVSLLFEQPDTTSYLGFRDRTIMELFYSSGLRVSELVSLD 183

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------------- 257
            Q    +  +IK   K      + +     K +    +  E +                 
Sbjct: 184 RQDFDYSNLTIKLKGKGKKQRLIPITKNAAKWIQSYLLHIERYQNLETHSAESDSNAIFL 243

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           N    ++        F    TK+G+    + H +R   AT   + G     +    G ++
Sbjct: 244 NKWGTRLTTRSVDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQLLLGHRS 303

Query: 316 VDQAETYTKGADRIRLGIKN 335
           +     YT+ + +++  +  
Sbjct: 304 LSTTTIYTQVSTKLKQKVYA 323


>gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
 gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296]
          Length = 358

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 33/303 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
            + ++  + +   +    +  +  S+ S  +         G      I    IR  + S 
Sbjct: 56  FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+  +  +++R  F WA  +E V  NP   +  PKR+       ++E M Q  
Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175

Query: 184 SFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
           +   E            +     E L  SG+R S+     +Q +     +++   K    
Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKS------ 285
             V L    +K L          +I    Q + A           A +   + +      
Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295

Query: 286 -------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                  AH +R  +AT   D GA    +    G  ++   + YT      RL    +R 
Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYARA 354

Query: 339 ISS 341
              
Sbjct: 355 HPR 357


>gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
 gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus cereus AH187]
 gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26]
          Length = 304

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 90/290 (31%), Gaps = 24/290 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+ +I EY            +  +      Q+ R      G  +   I T H++  V ++
Sbjct: 3   LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEAINTLHLKQYVRTK 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DM 179
                 P S +     +R  F W  ++EY+  N    VE PK   + ++ +T +     +
Sbjct: 63  YKEGLQPQSIVSMFKLVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTIQEVSAMI 122

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKT 229
             F       ++ +     L   GLR  +      Q+++          N    +     
Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETTILVNGKGNKERIMFISPP 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
              I +       + L    +  + +F++     ++        K    +  V     S 
Sbjct: 183 LKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H  R F A      G     L    G   V   + Y +  +   L  K  
Sbjct: 243 HTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292


>gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019]
 gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019]
          Length = 334

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   R    +  R+    +   +         +  ++       +   TL  
Sbjct: 4   KKLEDGRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDRRTLND 63

Query: 74  LIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+   +         A   R    +  +++       D  K+     RS   +    PSS
Sbjct: 64  LLELWWMYHGQHRRKAEEDRKQLCNIINELGADMQAVDLDKLKIIAWRSQKIAAGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F    R         +        +     +  +          +G   
Sbjct: 124 ANRYMNRLSGMFTVLKRIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTLDGDYW 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R+A    L +G R S++C+   + + +N  +    K G   TV +     + +     G 
Sbjct: 184 RVALLC-LSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F +  K         ++AH +R   A+     G     L    G
Sbjct: 243 LFEVK--------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
 gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis IBL 200]
          Length = 356

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 110/362 (30%), Gaps = 50/362 (13%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++                + +     K  Y +  +        ++  + K      
Sbjct: 2   TGKRKQKSKGGFRTKKEAQNAAANMITEIEKGIYFDDKQFS------ILDIWEK-LKPIR 54

Query: 87  LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            A     S+E         I+   G    + I    I+S     K       +       
Sbjct: 55  KAELKITSYEKDISLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTISNIHRC 114

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198
            R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E   +  + F  
Sbjct: 115 FRCIFKHAVEWEILHDNIMNKVKKPREEQVEMKTWSSEECNRFLHYLKEKNKKYYMFFLL 174

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI---------------------KTQKTGTIITVEL 237
            +Y+G+R  +      + +  +   I                      + ++ +I +  +
Sbjct: 175 AIYTGMRRGELLALTWKDIDFDNQRILVNKSLVKTEEGLFKAATKTKSSNRSISISSFVV 234

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
            +     L                   F  N     ++      + K    KAGV +   
Sbjct: 235 IELQTYYLYKKKEFFRWGISLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R   AT+   AG     +    G  ++    + Y+       +  + +    S++ S
Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFESIIKS 352

Query: 346 DD 347
           ++
Sbjct: 353 NE 354


>gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu]
          Length = 306

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 90/288 (31%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I+ Y  +      L+ ++  ++     ++ + +       ++   +R   +   +   + 
Sbjct: 6   IAAYLSNLKHVRQLSDHTLRAYTHELGELKKLAAGRPLEALSAVDMRGAVARAHAAGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L++ R  ++W  ++  +  NP  +V  PKR     +  + +D          G+
Sbjct: 66  RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDAPLPGT 125

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234
               +     E L  SGLR ++     V++ Q + +                        
Sbjct: 126 TEGLRDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVTVRGKGNKERK 185

Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284
           V +    +  L                  F++    +M+        K  A  AG+    
Sbjct: 186 VPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAHV 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT    +      +    G  +V   + YT   D   L 
Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT-SLDFQHLA 292


>gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 84/315 (26%), Gaps = 30/315 (9%)

Query: 46  AYMSALT-GSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII 103
           A  +A   G  P  +            +  I  +         ++  + I++     +  
Sbjct: 2   ARPAARAIGGAPAPDDAARTIPASGDARTEIRNWYSHLMGERRMSEATLINYHRDLTRFF 61

Query: 104 RKS-----GDFDYRKITTKHIRSGVESRKHTP------SSAIQFLTSMRVLFKWAVRQEY 152
                   G    + +    +R                 S  + L+S+R  F++  R   
Sbjct: 62  EFLVDHLGGPATLKDLGRLELRDFRAFVSQRRKDGLQSRSLARMLSSVRSFFRFLDRTHV 121

Query: 153 VAINPCLSVERPKRKTEGIRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           ++     ++  PK      +P T        ++ +        G++       L   GLR
Sbjct: 122 LSNASATALRSPKLPHAIPKPLTAAGARELLDEAEIAHEEPWIGARDIAVLTLLYGCGLR 181

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
            S++                T K G    V +       +             +D   + 
Sbjct: 182 VSEALGLNRSEAPLKDVLRITGKGGKERVVPVLPAARMAVDDYLRLCPHGLAKDDPLFVG 241

Query: 266 ATQ-------FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +                   + G+    + H +R   AT     G     +    G  ++
Sbjct: 242 SRGARLGQRQVRETMTRLRRRLGLPESATPHALRHSFATHLLAGGGDLRSIQELLGHASL 301

Query: 317 DQAETYTKGADRIRL 331
              + YT   D  RL
Sbjct: 302 STTQMYT-EVDAARL 315


>gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 318

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 33/283 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR------- 126
           Y          + ++  ++     + I      G     ++T   + S   +        
Sbjct: 20  YLDYLAVERGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPVLESFARALEAGFGDY 79

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               PSSA + + S+R   ++A     V  NP   +   K         T E++Q     
Sbjct: 80  AAVAPSSARRVIASVRSWHRYAYETGVVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEA 139

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239
                     + R   EFL  +G R S++    V  +  +      +  G      L   
Sbjct: 140 ASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLSML 199

Query: 240 -------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNK 284
                             LA     +   F+N   + ++        +A A +A   V  
Sbjct: 200 GHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITVPV 259

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   AT     GA    +    G  +V   + YTK ++
Sbjct: 260 GPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 302


>gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
 gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus
           G9842]
          Length = 369

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   ++  +  
Sbjct: 66  KDYLNHWLE-IKSMSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAINKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 ITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTSIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRATHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
 gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis
           2.10]
          Length = 311

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 29/290 (10%)

Query: 72  KWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           +  + ++         A  N+  ++     + +           G     +I+T  +R+ 
Sbjct: 14  RDALEQWLAGLAALQGAAENTVTAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAW 73

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
           + + + T + A    + L++++  + W   ++       LS   PK + +  RP  ++  
Sbjct: 74  MAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAA 133

Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 ++   +     ++       L   GLR S++                T K G  
Sbjct: 134 RAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGADAPLPAVLRITGKGGKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK- 284
             V +       +                                        + G+   
Sbjct: 194 RIVPVLSAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLIRSAMAQARAQLGLPAS 253

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   +AG     +    G  ++   + YT   D   L  
Sbjct: 254 ATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT-AVDTAHLMD 302


>gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355]
          Length = 301

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 6   LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+S R    W V++  +  +P   ++ PK+     +   +E + Q   
Sbjct: 66  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 125

Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
              + S     +    FE +  SGLR S+        +  +   ++          V L 
Sbjct: 126 LPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 185

Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
              ++ L      ++T       F   +  +++  Q     ++ A + G   + S H +R
Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A+    +      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 288


>gi|325983587|ref|YP_004295989.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533106|gb|ADZ27827.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 345

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 17/316 (5%)

Query: 17  RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  F   +G R+R      + T    +   L       E + +  K+  T    
Sbjct: 5   KRGKTWWIRFTAPNGERVRCSAATEDKTQAQEFHDKLKAELWLVERLGN--KQKRTWDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSS 132
             ++            +    +     + +        +I    I   +  ++++ +PS+
Sbjct: 63  ACKFLLETQHK----ATHERDKEKLRWLQQFLRKKLLNEIDRMLIDHIAHTKAKETSPST 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A + L  +R + + A        +    +         +R  T   ++          Q 
Sbjct: 119 ANRHLALIRAILRKACYDWE-WTDKVPKIRLFPEPKHRVRWLTPGQVKMLLKELPVHQQD 177

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + F   L +GLR S+        +      +                     LA+    
Sbjct: 178 MVIFA--LSTGLRQSNVINLEWSQVDLERKAAWVHPDQAKARKAIHVPLNSIALAVLFRQ 235

Query: 252 KETFFINNDKQKMNATQF--SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
                      K  +  +  +  ++    +AG++    H +R   A+  A  G   + L 
Sbjct: 236 SGKHPSRVFTYKDRSISWANTSAWRNALKRAGIDNFRWHDLRHTWASWLAQQGTPMNVLQ 295

Query: 309 ATYGWKTVDQAETYTK 324
              GW++ +    Y  
Sbjct: 296 ELGGWESEEMVRRYAH 311


>gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
 gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201]
          Length = 304

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 36/288 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128
           ++ Y         LA N+  ++     + ++            R IT  H+R+ V   + 
Sbjct: 1   MARYLDHLVVERGLAANTVSAYRRDLARYLQHLTATAAHVRVPRDITADHVRAFVRRIRE 60

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   +  S+ + L ++R    + V +  V  +    V  P       +     +++
Sbjct: 61  GDAAHPALSARSSARVLAAVRGAHAFWVTESSVDTDVASRVSPPMPPQRLPKAIGVTEVE 120

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGT 231
              +     +    + R   E L  +G R S++    V  L             T K   
Sbjct: 121 NLLAAPDPDTPAGLRARAFLELLYATGARISEAVALDVDDLAGLHDEDLALIRVTGKGAK 180

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKA 280
              V +    +  L    I        + +            +++        K  A   
Sbjct: 181 QRLVPVGSFAVAALDRYLIRARPELARHGRGSPAVFLNARGTRISRQTAWNMVKDAARTI 240

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 + H +R   AT   + GA    +    G  ++   + YT+ +
Sbjct: 241 HQEERITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVS 288


>gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
 gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1]
          Length = 339

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 37/316 (11%)

Query: 51  LTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108
            T + P+ E   +P R    +   L   +          + N+  ++      +      
Sbjct: 9   RTAALPEPEAQAAPLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSR 68

Query: 109 FDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                    T  +RS +    +     SS  + L+++R LF++ + +   A +P   +  
Sbjct: 69  RRLSIGSADTAALRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAG 128

Query: 164 PKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCR 211
           PKR     +  +           +Q       G++ R A    L      +GLR S+   
Sbjct: 129 PKRGRSLPKVLSIADVDRLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVS 188

Query: 212 AGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------------PIGKETFF 256
             +   + +   I  +        V L  G  + +A                P  K  F 
Sbjct: 189 LPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWLFP 248

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313
              +   +    F+   K  A +AG++    S H +R   A+     GA    +    G 
Sbjct: 249 SFGESGYLTRQHFARDLKDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGH 308

Query: 314 KTVDQAETYTKGADRI 329
             +   + YT   +  
Sbjct: 309 SDISTTQIYTHVVEER 324


>gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 332

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 14/262 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
           Y  S     LA+ +   +    ++        +   +TT  IR  + S   T     +  
Sbjct: 60  YLASKKIDGLAMRTLEGYSRNLNRFA-YYMRKNVEDVTTMDIRMYLASYAKTGVKNGTIG 118

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +R  F+W   +EY+  +P   ++  K +    +  T E+M+       +  + + 
Sbjct: 119 TETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEI-LRDGCKTYRQKA 177

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             EF   +G R  +        +           K     TV +       +    + + 
Sbjct: 178 LLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVHIQKYLMARL 237

Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
                      N  +K+        F      +G+ KS   H +R   AT   ++GA   
Sbjct: 238 DEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRHTMATHLLNSGADLG 297

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            + A  G +     + Y + ++
Sbjct: 298 TVQAILGHEDASITQIYAQISN 319


>gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521]
 gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521]
          Length = 380

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 111/352 (31%), Gaps = 48/352 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SA 82
           Y   G  RR+            A+  A      K     SP       K  I ++     
Sbjct: 20  YDNTGKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHT 77

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFL 137
               L+VN+R  + S  +  +I   G++  + I+   +++        +   P +  ++L
Sbjct: 78  TSLKLSVNTRNDYLSRINTNLIPLLGEYKIKDISIDVVQNFYNTLINEKHLKPVTVKKYL 137

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +    K+A  ++ +   P   +++ K +   I  W ++++  F ++  + +       
Sbjct: 138 DILSSCLKYAQSKDLIYKLPTNYIQKVKIQKPKIEYWNQDEVNFFLNYI-KNTYLYTPIF 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPD 239
             + +GLR  + C      +      I                        +   + +P 
Sbjct: 197 IDVLTGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLMLTDLKTSSSHRRITIPK 256

Query: 240 GFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWF-KAKAT------KAGVNK--- 284
             +  L       +        ++ +  K      S+ F K  A       K   +K   
Sbjct: 257 ILIDYLKELKADRSATDNGYVVLDRNDYKYTPRSLSMNFTKKVAKFSDSKEKHKDDKNYM 316

Query: 285 -----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                S HG+R   AT+    G     +    G   +     TYT   D ++
Sbjct: 317 QLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 368


>gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 314

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 88/279 (31%), Gaps = 24/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124
           L+  +  +         LA NS  ++     + +      G   + ++    I++ +   
Sbjct: 20  LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHLAEL 79

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  +P S  + L+++R L +    +   + +P   +E P+         + +++ +  
Sbjct: 80  VRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLL 139

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
           +        G + R   E L  +GLR S+     +  +      +  +        V + 
Sbjct: 140 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVG 199

Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286
                 +                 +  F+     +M    F+      A+        S 
Sbjct: 200 APAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 259

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   V   + YT  
Sbjct: 260 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 298


>gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 339

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 45/295 (15%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           + ++          +  +  ++ +   Q                ++   H +       H
Sbjct: 15  VEQFLTWMTDQKGFSPATISAYRTDLLQFEEWLHREQHSLARPGELEKYHFQDYSAHLFH 74

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
                SS  + L+++R LF++ ++ + +  NP   V  PKR+         + M      
Sbjct: 75  EGQARSSIGRKLSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLDE 134

Query: 184 -----------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                                     +  ++     E L  SGLR S++    V  +   
Sbjct: 135 ASVESGGAAGLDGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDPA 194

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSI 271
              I+            L D  ++ L +         P  ++  F+ N  +++N  Q + 
Sbjct: 195 SGFIRVIGKGSKERIAPLSDTSVRALFLWLRVRALIAPPAEKALFVGNRGKRLNRRQAAR 254

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   AG+    S H +R   AT   + GA    +    G  ++   + YT 
Sbjct: 255 ILDEIRKSAGLPQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTH 309


>gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 336

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 87/320 (27%), Gaps = 57/320 (17%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKHIRSGVE 124
           ++ + K      +++  +  ++     Q +             D     + T  IR  + 
Sbjct: 14  LTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLFLG 73

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------ 175
                     S  + L S++  FK+ V   ++  +P  +V  PK K              
Sbjct: 74  ELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQT 133

Query: 176 --------------------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                               K +      +    ++ R   E     GLR ++     + 
Sbjct: 134 LFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIM 193

Query: 216 HLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------ 262
            L     F     K      + L +   K L      K+ FF                  
Sbjct: 194 ELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEK 253

Query: 263 --KMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++         K           KS H +R   AT   + GA    +    G   +  
Sbjct: 254 GKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLST 313

Query: 319 AETYTK-GADRIRLGIKNSR 337
            E YT    +R++   + + 
Sbjct: 314 TEIYTHISFERLKQVYQQAH 333


>gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
 gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium
           etli CIAT 652]
          Length = 383

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D I                       + +  +  
Sbjct: 75  VESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLARQGF 134

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L +MR  +K+   +     +P   ++ PK+     +    E++ +  S    
Sbjct: 135 KPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSRLLSQAQA 194

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            +                 E L  +G+R S+      + L       +   K      V 
Sbjct: 195 EADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 254

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA--------------TQFSIWFKAKATKAGV 282
           L    +K L               + + +                 F+   K  A +AG+
Sbjct: 255 LSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGL 314

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 315 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 364


>gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 419

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 86/284 (30%), Gaps = 17/284 (5%)

Query: 77  EYRKSAHWGSLAVNSRI---SFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-- 130
            Y  S      A +S+    ++E   + +   S G   + +I ++            P  
Sbjct: 132 RYIASVAAKRHARSSKSIMINWERTIEFLKSYSKGRLVFSQIDSRMAEDFKLFLLAAPLG 191

Query: 131 ---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++A ++ +  +   K A    Y+ ++    ++    +       T +++  
Sbjct: 192 GGKKGILSRNTAARYFSIFKAALKQAFIDGYLTVDLSSKIKGIPEQESRREYLTIKELNV 251

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 E    + A  F   +GLR SD  +   + +       K   T            
Sbjct: 252 LAEMPCEKDVLKRAALFSALTGLRHSDIQKLRWKEISLEDDMAKLHFTQKKTRGVEYMPI 311

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +                 +   + +  S   K     AG+ K  + H  R   AT+   
Sbjct: 312 SEQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLS 371

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           +G   + +    G   V   + Y K  D  +     + ++ S+ 
Sbjct: 372 SGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRASQAIQLESLK 415


>gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 302

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 93/286 (32%), Gaps = 26/286 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           L+ ++ E+        L+  +   +      +F  I ++    D  KI    I + +   
Sbjct: 3   LEDVLEEFIFDCKLRRLSEKTIKGYRNNNLRFFTFIKKEYDIDDLGKIQGNVINAYIAYL 62

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 PS     + S R  +K+   ++YV+ NP   V   K+    I+ +  ++++   
Sbjct: 63  TSIGRKPSYINGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV 122

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++        + +L    LL +G+R S+ C   +  ++ +   I+ +     +    P 
Sbjct: 123 RYYGSVRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDHILIRGKGNKERVVPISPI 182

Query: 240 GFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAG----VNK 284
               L+    +           Q           K+            A        +  
Sbjct: 183 LNKILIKYKRVRNLYIKDKFAYQIEYLFLSQKGKKLTPETVERVVLECAEACKVRKTIRC 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           S H  R + A      G   + L    G   ++  + Y +  D  R
Sbjct: 243 SPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDER 288


>gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 321

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 85/293 (29%), Gaps = 16/293 (5%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A   +   R        +  + +  + E+         +  +   +  +     R   D 
Sbjct: 4   AKKKTRLVRIVEQEELTRSVSWEEALQEFLLLKKAEGKSERTIKDYGYHIKHFFRLYPDT 63

Query: 110 DYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           D     I  + I   +   +  P+     L  M+  F W V++  +  NP    +R K  
Sbjct: 64  DLADAGILKRRIIDYMAE-EVKPAYYNNKLVYMKTFFNWCVKERVLIENPVKEFKRRKAD 122

Query: 168 TEGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---- 220
              ++      K+ +         G +        L SG+R  ++    +  +       
Sbjct: 123 ERIVQFDLELLKKLLAIPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEV 182

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFK 274
               +  KT    T+ +     K +        +       F + +  KM    +     
Sbjct: 183 YIRAENAKTRVSRTLPISPITAKAIQKLINVRPSDWNDVPIFCSCEGNKMLGNTWYKRLS 242

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K G     + +R   A      G  +  L  T G   ++  + Y   AD
Sbjct: 243 KYGEKLGTKLYPYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSLAD 295


>gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2]
 gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 347

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 94/331 (28%), Gaps = 42/331 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD- 110
            +          R    +   L   +          + N+  ++      +    G    
Sbjct: 16  ATAAGEREAAPLRPTSYSDAGLSELFLDMIAAEQGASANTLDAYRRDLADLSHYLGRRRK 75

Query: 111 -YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                 T+ +R  +          +S  + L+++R LF++ + +     +P   +  PKR
Sbjct: 76  SIASADTEALRGYLADLDTRGFASTSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKR 135

Query: 167 KTEGIRPWTKEDMQQFKSFWS------------EGSQPRLAFEFLLYSGLRCSDSCR-AG 213
                +  +  D+ +                    ++     E L  +GLR S+      
Sbjct: 136 GRGLPKVLSIADVDRLLGCARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPR 195

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------------------PIGKET 254
                +    +   K      V L       +                      P  K  
Sbjct: 196 TAARGDARMIVVRGKGDKERLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAPASKWL 255

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311
           F    +   +    F+   K  A +AG+     S H +R   A+     GA    +    
Sbjct: 256 FPSFGESGHLTRQHFARDLKELAARAGLPPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 315

Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
           G   +   + YT    DR++  +++   ++ 
Sbjct: 316 GHSDISTTQIYTHVVEDRLKSLVRDLHPLAE 346


>gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
 gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516]
          Length = 315

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESRK 127
            I  + ++       A N+++++                 +      H+ +     E+  
Sbjct: 11  WIQAFLEAQAAELDAATNTQLAYARDLKDFAAWLERRPAHFADAAQSHVEAYLIDCEAIG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L++++ L+++A  + + A NP + +  P R+    +  + E++ +  +   
Sbjct: 71  LARATRARRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEEVDRLLAAAR 130

Query: 188 EGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
              +  +    L      +G+R S+     V   + +   +    K G    V L  G  
Sbjct: 131 TTPRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQGAR 190

Query: 243 KLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
             +A                     +  F  +     +   +F    K  A   GV    
Sbjct: 191 AAVAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGHLTRHRFFTLIKEIAVLGGVSPEK 250

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT   + GA    +    G   V   E YT   D     +
Sbjct: 251 VTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRAL 300


>gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens
           SM101]
 gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens SM101]
          Length = 450

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 50/303 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS-----------------------GDFDYRKI 114
           Y ++    SL  N+   +        +                         GD   + I
Sbjct: 142 YLENVKGKSL--NTAKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIKDI 199

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           T   I + +      R ++  +  + + +++  FK+   + + +  NP + +E PK    
Sbjct: 200 TLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENPTVELESPKINKR 259

Query: 170 GIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                T +      +  ++ +    +        L  G+R S+ C   ++ ++ +  +I 
Sbjct: 260 HPVYLTLDQSITVLNSMNKSNKNYYRDYCILTLFLNCGMRLSELCNIEIEKIKGDTLTII 319

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKA 275
            +      TV L +  +  +      +             F+++  + +N     I  K 
Sbjct: 320 GKGN-KERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPINKRSVEILVKK 378

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IR 330
               AG      + H +R  +AT+    G      L    G + +   + YT   D  +R
Sbjct: 379 HIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLR 438

Query: 331 LGI 333
             +
Sbjct: 439 KAV 441


>gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236]
 gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236]
          Length = 345

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 93/354 (26%), Gaps = 38/354 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y      +R+R  +      +      L                   L
Sbjct: 4   RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLAQRGDLDIDYTLAETAAQRL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+S++ +  H  SL+     +     + +    GD        +      + R     
Sbjct: 64  KTLVSQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF 120

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         ++  +    +R +F    R  +      L   R  R++E    +  
Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180

Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           ED  +      + S  +   +     L +G R S++ +     +  N  +    K+    
Sbjct: 181 EDDIKRLLHECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           TV +     KL+                       F              +  H +R   
Sbjct: 241 TVPISTELHKLIPKIKGRLFGNA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           A+     G     L    G  T+     Y+           +     S+   D 
Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339


>gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676]
 gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1]
 gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676]
          Length = 330

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A        +         +    T    I+ + K     +L   +   + +     +  
Sbjct: 2   ARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61

Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
             + +               +    I      R     S    L ++R  + +  +Q+++
Sbjct: 62  LTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121

Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             NP  +++  K +   I  ++KE       Q       G +       +L +G+R ++ 
Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINEL 181

Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262
               V+ ++       I+  K+     V +       L      +        F+  D  
Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDGT 241

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++               A +     S H  R   A +S   GA   EL A  G   ++  
Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301

Query: 320 ETY 322
           +TY
Sbjct: 302 KTY 304


>gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
 gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301]
          Length = 320

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 89/304 (29%), Gaps = 30/304 (9%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG 122
           K    L+  I  + +S       A N+ +++++                 +     +   
Sbjct: 14  KNTMALERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADY 73

Query: 123 VESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +        SA    + L+S+R   ++ +R    A +P      PK      +  ++ ++
Sbjct: 74  LGGLATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEV 133

Query: 180 QQFKSFW-----SEGSQPRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQ 227
               +         G       E L  +G+R S       ++       L       + +
Sbjct: 134 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 193

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
                         ++ +      +  F        M    F+   K  A  AG++    
Sbjct: 194 IVPLSAAARDAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARV 253

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           S H +R   AT     GA    L    G   +   + YT            + R+  +V+
Sbjct: 254 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVL---------AERLQKLVE 304

Query: 345 SDDP 348
              P
Sbjct: 305 EHHP 308


>gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 283

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHT 129
           +        L+V +  ++ +      +                 +     R  + ++   
Sbjct: 4   FLDHLKARGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRK 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P++    L ++   F WAV      I+P   V R   +    R  T+ ++        + 
Sbjct: 64  PATVNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKH 123

Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK 243
             S+ R     LL++GLR S++    VQ           +++  K      V L     K
Sbjct: 124 GASRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNATARK 183

Query: 244 LLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
           ++        G E  F   +   M         K  A  AGV  + H +R     +  DA
Sbjct: 184 MIQEWLDGHPGGEYLFPGRNGGPMTPRAVQKRLKELARLAGVEVTPHKLRHTFCKMLVDA 243

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           G +   +    G   ++    YT+ G   +   ++   
Sbjct: 244 GESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKLA 281


>gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 305

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120
           + E+         ++ ++  ++      ++  + +              D  ++ + H+R
Sbjct: 4   VDEFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLR 63

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408]
 gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408]
          Length = 223

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191
            ++S+R   ++  ++     +P   ++ PK+  +     T  ++++           G +
Sbjct: 1   MISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIR 60

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT-- 248
            R   E +  +G+R S+     +  L  ++       K      + L D  ++ L     
Sbjct: 61  DRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLD 120

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
                      +   F+NN  + ++        K    +AG+    + H +R   AT   
Sbjct: 121 EARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLL 180

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT    + 
Sbjct: 181 ENGADLRTVQELLGHADISTTQIYTHITKKR 211


>gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 330

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A        +         +    T    I+ + K     +L   +   + +     +  
Sbjct: 2   ARRKNTLDESELAVIKKQSKSYVETFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61

Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
             + +               +    I      R     S    L ++R  + +  +Q+++
Sbjct: 62  LTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121

Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             NP  +++  K +   I  ++KE      +Q       G +       +L +G+R ++ 
Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFRQPNLRTFTGVRDYTIMMLMLETGIRINEL 181

Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262
               V+ ++       I+  K+     V +       L      +        F+  D  
Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESSALFVTVDGT 241

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++               A +     S H  R   A +S   GA   EL A  G   ++  
Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301

Query: 320 ETY 322
            TY
Sbjct: 302 RTY 304


>gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
 gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp.
           PE36]
          Length = 288

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 18/290 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + L+ ++ +       +  +R S+    +Q+ +  G      I+ K +            
Sbjct: 2   RQLLQQFNEEITLRGYSERTRNSYRYAINQLYKYFGQ-PLDTISDKQLEMYFRYLNLEKH 60

Query: 132 SAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                  ++++       + +  +  +  +SV  PKRK +  +  T++D+     +    
Sbjct: 61  ---HCRATLKLHLNGIHFLFEHVLHRSFTISVCLPKRKEKLPQLLTQQDISAVIYYCKTN 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
              R         GLR S+     V  +      +K  +        V +    ++ +  
Sbjct: 118 KH-RAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPVLLQFMRQ 176

Query: 248 TPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                           +     ++ + F       A KAG+    S H +R   AT    
Sbjct: 177 YWQQYHPDTWLFGSRWHGVIYPIHESTFRKGLTCAAKKAGITKPCSPHSLRHAYATHQLQ 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSDDP 348
           AG   ++L    G +++   E Y   +  +   G      +   +    P
Sbjct: 237 AGMPLNQLQQQLGHQSIQSTERYLHWSPELGHQGTDLLANLGGGLSWQHP 286


>gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18]
 gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18]
          Length = 422

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 106/347 (30%), Gaps = 34/347 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-G 85
           +       LP  +  T  P  + +                     + ++  + +   +  
Sbjct: 77  RDEAPSTTLPVTYTRTLAPEQVESSALPDSALPESALGVSGEV-FRPVLDRFERFLRYEK 135

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
             +  +  S+ S  +         G      I    IR  + S        S+ ++  ++
Sbjct: 136 HRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSLHLRQAARSTVVRRGST 195

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +R  F WA  +E V  NP   +  PKR++      ++E M Q  +   E           
Sbjct: 196 LRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQERRAQDPRDARL 255

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248
            +     E L  SG+R S+     +Q +     +++   K      V L    +K L   
Sbjct: 256 LRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVPLGTPALKALNRW 315

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKS-------------AHGVRKFSA 294
                  +I    Q + A           A +   + +             AH +R  +A
Sbjct: 316 VSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQASGAHVLRHSAA 375

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           T   D GA    +    G  ++   + YT      RL    +R    
Sbjct: 376 THLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYARAHPR 421


>gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
 gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306]
          Length = 281

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 81/270 (30%), Gaps = 16/270 (5%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH 128
             I ++ +   +    +  +   + S    +         F+   + +    +    +  
Sbjct: 3   EAIYDFAEHQRYVLGRSEATIKGYTSDLLDLAQTTEDFASFNLAHLRSWLASAVAAGKAR 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
           +  +  +   + +    WAV+Q Y+  +    +  PK   +  +   +++          
Sbjct: 63  S--TLARRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNAHS 120

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                  +     E L  +G+R S+     +  + ++  +I+   K      V       
Sbjct: 121 VDELHSLRDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQ 180

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           K L +    +     +     +            +     AG   S H +R  +AT   +
Sbjct: 181 KALDLWLARRAEMAKDPSALFVGTRGGRIDQRQVRRVVEAAG-QVSPHALRHSAATHMLE 239

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI 329
            GA    +    G  ++   + YT      
Sbjct: 240 GGADLRVVQELLGHSSLQTTQVYTHVTSER 269


>gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 286

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 17/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           L           +L+  ++ S+     +  R  G     ++  + +R+       +  S 
Sbjct: 7   LRRRMIDDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 65

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q + ++R  F   +    +           +   +       +++ +F        
Sbjct: 66  PALNQTVCALRFFFGVTLGHGEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + R A      +GLR S++    V+ +      I+    K G    V L    + +L + 
Sbjct: 121 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 180

Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                     F   ++ + ++        ++  T AG++K  + H +R   AT   ++G 
Sbjct: 181 WRLARPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGT 240

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G   +     YTK ++
Sbjct: 241 DIRIIQVLLGHNNLSTTARYTKVSN 265


>gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
 gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131]
          Length = 313

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 13/300 (4%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
               P +++A      +   +   R +  T+      Y  S  +  L+   R     + +
Sbjct: 2   PEDDPRFVAAWLAEEQRAPTV-RSRSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVE 60

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +I  +      + +  +HIR+ +E    +P  A   L + R L ++ + +  +  +P   
Sbjct: 61  RIKEQGEKALLKDLLPRHIRADLEPL--SPPVASSRLKAWRKLAEFWLLKGMLDADPSEG 118

Query: 161 VERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217
           V+R K     G   WT ED++ F++ W  G+  RLA E   ++G RC D  R G Q +  
Sbjct: 119 VKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGR 178

Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                              T     L +    L+   P+G   + +    +       S 
Sbjct: 179 DGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQ 238

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           WF A A +AG+  ++AHG+RK+     A+ GA+   + +  G  T+ + + YT+ ADR R
Sbjct: 239 WFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 298


>gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5]
 gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 351

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 101/331 (30%), Gaps = 42/331 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDF 109
            + P        R    +   L   +          + N+  ++      +         
Sbjct: 20  AAEPANRETAPLRPASYSDAGLSELFLDMIAAEQGASANTIDAYRRDLADLSHYLTRSRK 79

Query: 110 DYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                 T+ +R   + +++R    SS  + L+++R LF++ + +     +P   +  PKR
Sbjct: 80  SIASADTEALRGYLADLDARGFKSSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKR 139

Query: 167 KTEGIRPWTKEDMQQFKSFWS------------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                +  +  D+ +   +                ++     E L  +GLR S+      
Sbjct: 140 GRGLPKVLSIADVDRLLGYARQQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPS 199

Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT-------------------PIGKET 254
              + +   I  +        V L     + +                         K  
Sbjct: 200 SAARGDARMIVVRGKGDKERLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWL 259

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311
           F    +   +    F+   K  A +AG++    S H +R   A+     GA    +    
Sbjct: 260 FPSFGESGHLTRQHFARDLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 319

Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
           G   +   + YT    DR++  +++   ++ 
Sbjct: 320 GHSDISTTQIYTHVVEDRLKSLVRDLHPLAE 350


>gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
 gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1]
          Length = 307

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 88/294 (29%), Gaps = 28/294 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPS 131
           I  + +        A+N+  ++      +      G    R      +R+ +        
Sbjct: 6   IDAFLEMQAAERGAALNTLAAYARDLADMTAVLHAGGVTARTAGEADLRAYLAGLAGQGL 65

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +A    + L+ ++  F +  R+     NP   +E P+  T   R  ++ +++   +  + 
Sbjct: 66  AARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGEVEALLAACAP 125

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236
                          R A E L  SGLR S+                +   K G    V 
Sbjct: 126 EPDATPARQRRLQVARAALEMLYASGLRISELLALPRRALDAAPGMMLVRGKGGRERMVP 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN---KSAH 287
           +     +                          M    F       A +AG++    S H
Sbjct: 186 MSARAREAARALMEADAARRSPFLFPGRGVARPMTRQGFDRILHDVALRAGLDPARLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
            +R   AT     GA    L    G   +   + YT    DR+R  + +   +S
Sbjct: 246 VLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHPLS 299


>gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2]
 gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2]
          Length = 298

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 102/285 (35%), Gaps = 26/285 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKIT----TKHIRSG 122
            TL+     +        SL+ ++  ++    +     +  + +   +      K IR  
Sbjct: 1   MTLQDACQSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSLLNKDDLRKFIRHL 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQ 181
            E RK    +  + +  +++LF+W  ++  ++INP  +  ER +      R    E+++ 
Sbjct: 61  REERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKL 120

Query: 182 FKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSI 224
                +  +  +        +A + LL +G+R  +  +  ++          +Q      
Sbjct: 121 LTGAINLEATDKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNRQ 180

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +          +    ++ +        +  FI          +  I     A+KAG+ +
Sbjct: 181 RLVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTTQKTRILLGDLASKAGIER 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + H +R  +AT   +AG     +    G +++   E YT   D
Sbjct: 241 RITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285


>gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114]
 gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114]
          Length = 298

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 17/267 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHTP--- 130
           +  Y K+      + ++  ++     +++R   D     + T +   + ++         
Sbjct: 11  LELYLKTLLQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS ++ L+  R    W V+ E +  +P  +++ P+      +   +E +           
Sbjct: 71  SSLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130

Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245
               + +  FE +  SGLR S+     +  +  +  +     K G    V L    +  L
Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPLVAKSIAAL 190

Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                      G++  F N +  ++   Q     +A A + G   + S H +R   AT  
Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             A      +    G   +   + YTK
Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277


>gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99]
 gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99]
          Length = 330

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 26/303 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A        +         +    T    I+ + K     +L   +   + +     +  
Sbjct: 2   ARRKNTLDESELAVIKKQSKSYVETFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNL 61

Query: 106 SGDFDYR------------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
             + +               +    I      R     S    L ++R  + +  +Q+++
Sbjct: 62  LTEQEIDVSLLRPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHI 121

Query: 154 AINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             NP  +++  K +   I  ++KE       Q       G +       +L +G+R ++ 
Sbjct: 122 PRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRVNEL 181

Query: 210 CRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQ 262
               V+ ++       I+  K+     V +       L      +        F+  D  
Sbjct: 182 VGLSVKDIRWEDSLLVIRNAKSYRERQVPIQRDMKNQLKKYIAIRGYVESTALFVTVDGT 241

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++               A +     S H  R   A +S   GA   EL A  G   ++  
Sbjct: 242 RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIV 301

Query: 320 ETY 322
           +TY
Sbjct: 302 KTY 304


>gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619]
 gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC
 gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619]
          Length = 299

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 88/281 (31%), Gaps = 25/281 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES 125
           +  Y         ++ ++ +++    +++I           G    +++    + +    
Sbjct: 5   LEAYCAHLRNERQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLR--QLIARQHH 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +  +  S  + L+++R L+++  R+     +P   +  PK +    +    +   Q    
Sbjct: 63  QGQSSRSLARLLSAVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDTDRALQLLDG 122

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
                    + +   E    SGLR S+     ++HL           K G    + +   
Sbjct: 123 GVDDDFIARRDQAILELFYSSGLRLSELTNLDLEHLDLAAGLVQVLGKGGKARVLPVGRK 182

Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKF 292
             + +                 FI+    ++      +  KA   +  G +   H +R  
Sbjct: 183 AREAMQQWLRLRGIGGPRDGAVFISRQGNRLGPRAIQMRVKAAGERELGQHLHPHMLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A+   ++      +    G   +   + YT   D   L  
Sbjct: 243 FASHVLESSQDLRAVQEMLGHADISTTQIYTH-LDFQHLAA 282


>gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 296

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE---S 125
            I  + +        A  + IS+ +   Q     +      +  ++    IR  +     
Sbjct: 3   YIDSFLEYLLLEKKYAKLTIISYATDLAQFQVFILETYDTREMSEVNYPMIRQWIVGFIE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQ 181
              T  +  + L++++  FK+ ++ + +A+NP +  +  K        ++    ++    
Sbjct: 63  LGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPMVQHKSLKLPKRQQEAFSVLELEKVSDY 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII------- 233
           F+    EG +  L  E L  +G+R  +     +  L           K            
Sbjct: 123 FEDVTFEGLRDHLIIELLYATGMRRQELIDLQLSSLDLKQQQLKVRGKRNKERLIPLLDS 182

Query: 234 ----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                         LL        T         +       +F+  +TK  +  S H +
Sbjct: 183 ISFLIERYLQERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVSTKKKL--SPHLL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   D GA    +    G  ++   E YT  
Sbjct: 241 RHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHS 276


>gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193]
 gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193]
          Length = 306

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 80/267 (29%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L            +   ++ S            G       T + +R+          TP
Sbjct: 20  LRQRMIDDMRIRGMGEKAQKSHIRAIKDFAAFLG-RPPDTATPEDLRAYQLHMTDSGVTP 78

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189
           S+    + ++R  F     +E +        E      +    ++ E++          G
Sbjct: 79  STFNVRIVALRFFFSMTCGREEMKRYMQFRTEP----RKLPVVFSVEEVSDILMAAPGPG 134

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM 247
            + R A      +GLR S+ C   +  + ++   I  +  K      V L  G ++LL  
Sbjct: 135 LKYRAALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRA 194

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                               ++  Q S  F +    AGV K  + H +R   AT   +A 
Sbjct: 195 WWREARPEGWLFPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 254

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G   +     YT  A +
Sbjct: 255 TDVRVIQVLLGHAKLTTTARYTHVATK 281


>gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 375

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 99/351 (28%), Gaps = 40/351 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---RKKPTTL 71
           R R  K  +    G             +       A           N+      K  TL
Sbjct: 7   RKRGEKWSFTIDIGRDPLTDKRKQKTVSGFKTKKEAERACNELIHQFNTGSLVDDKNLTL 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              + E+ ++     +   + I++    + +II   G    + +   H +  V+S     
Sbjct: 67  SEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLIDEE 126

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFW 186
            +P         ++   + AV+ E +  NP   VE P+ +      W+ E+ + F     
Sbjct: 127 LSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTYAK 186

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229
            +       F   L +G+R  +      +++                     F+      
Sbjct: 187 FDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKTAG 246

Query: 230 GTIITVELPDGFMK-------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              +         +              +       +  F   D + +     +  F+  
Sbjct: 247 SKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFERF 306

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              A V K   H +R   AT+    G     +    G  ++    +TY+  
Sbjct: 307 IKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSHV 357


>gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita]
 gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita]
 gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3]
          Length = 297

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 3/266 (1%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           ++ +R      SL+  +     +   ++    G         + +    E    +  +  
Sbjct: 2   VNRWRTWQFAQSLSARTVEERVATVRRMAAWCGVEPEFAQVEQIVSWLAEGGNWSARTRW 61

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +  ++   F W  +Q +   NP + + RPKR     RP +  D+Q+         + + 
Sbjct: 62  TYYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLL-AVRAHKRTKA 120

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
                 + GLR  +  +   +HL     ++     G +         +  +A     +  
Sbjct: 121 MILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMPRRGH 180

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           +F   D+        S   K    +AGV  SAH +R +  T   +AG     +      +
Sbjct: 181 WFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMRHQ 240

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
           ++   E YT+  D+ R   +   R+ 
Sbjct: 241 SLTSTEIYTRVTDQRR--AEGIERLD 264


>gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 369

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLKFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 347

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 53/322 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------------- 119
             I  Y       + +  +   +   FD   +   +     I  + I             
Sbjct: 32  DFIRSYIDHLASKNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGI 91

Query: 120 ----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                    ++++ PS   + L++++ LF+  +    ++ NP   + RPK+        T
Sbjct: 92  AAYAEYLALTKQNAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLT 151

Query: 176 KEDMQQFKS-------------FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNN 220
           K +  +                   E  + R    F L  YSG+R S+  +     +  +
Sbjct: 152 KREWDELMQLLPSNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFH 211

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWF 273
             +I+          + L       L              +          +        
Sbjct: 212 EGTIRVIGKGNKERVIPLAKPVRVALRKFAAHYSLTMRGPEPIFQKQGKALSPRAVQHIL 271

Query: 274 KAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K    +             + H +R   AT  A  G     +    G ++V   + Y   
Sbjct: 272 KRHVDRLRPVLPFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHI 331

Query: 326 ADRIRLGIKNSRRISSVVDSDD 347
            DR +      +R   + DS+ 
Sbjct: 332 GDREK------KRAIELFDSER 347


>gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans
           743B]
 gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 311

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 88/284 (30%), Gaps = 34/284 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR---- 120
           L+ +Y        + + N+ + +                    D ++ +I  + I+    
Sbjct: 9   LVEQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINL 68

Query: 121 --------SGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGI 171
                      ++   +  +  + + S+R  +K+   +   +  N    +E PK      
Sbjct: 69  NDMYSFISYCQKTLNSSAGTRARKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    E   +      +  +        L   LR S+     +  + N+  S+  +    
Sbjct: 129 KYLNLEKSFRLLMECKKSIRDHCIITIFLNCALRLSELASLNIDQVNNDTLSVVGKGN-K 187

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN- 283
              + L     K +      + +        FI+ +  ++         K     +G++ 
Sbjct: 188 ERKIFLTPAAKKAINNWLHIRNSINVDTNALFISRNSNRITTRAIQNIIKKYVLSSGLDS 247

Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
              S H +R  +AT+    G      L    G ++V   E YT 
Sbjct: 248 KSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTH 291


>gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 339

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 90/336 (26%), Gaps = 24/336 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R            + +                K    L  LI  +
Sbjct: 9   GRWKVDVEPIKGRRFR-KTFKTKGEAQRFEATCRAKVINAPEWAPKPKDRRKLSELIDRW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQ 135
             + H  +L+     +     D + ++ G+    K+T       R+        P +   
Sbjct: 68  -ATLHAHTLSDG--EARRRLLDTMAKELGNPVAIKMTGNEYAEYRTQAIKAGANPKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQ 191
            L  +R +F    +   +     L+  RP R  E    +  +   +        +     
Sbjct: 125 RLGYLRSVFNVLHQLGEIDYANPLARVRPLRLQEKELAYLTDSQIETLFATIHRYCRTPH 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +     L +G R  ++       ++N + +    K   + ++ +     + +      
Sbjct: 185 VAMVAAICLATGARWGEAQALTPDRVRNQLVTFVNTKGKRVRSIPIALELEQQIHRHFKQ 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              F             F              +S+H +R   A+     G     L    
Sbjct: 245 HGQFSNCL-------NSFDKALGESRLPVPAGQSSHVLRHTFASHFVMNGGNILTLQKIL 297

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G  T+     Y        L   + + +     + D
Sbjct: 298 GHTTLAMTMRYAH------LAPDHLQDVVRFGPASD 327


>gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
 gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K]
          Length = 298

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 24/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124
           L+  +  +         LA NS  ++     + +      G   + ++    I++ +   
Sbjct: 4   LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAEL 63

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  +P S  + L+++R L +    +   + +P   +E P+         + +++ +  
Sbjct: 64  VRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLL 123

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
           +        G + R   E L  +GLR S+     +  +      +  +        V + 
Sbjct: 124 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIVPVG 183

Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286
               + +                 +  F+     +M    F+      A+        S 
Sbjct: 184 APAAEAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   V   + YT  
Sbjct: 244 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 282


>gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032]
          Length = 370

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 115/357 (32%), Gaps = 35/357 (9%)

Query: 14  ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69
           ++ + GK  +Y R      G+  R+          A   A      K   I+  R +   
Sbjct: 10  KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARKEAELILAQKLADISDARTETNI 69

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVES--R 126
           T+  L   +        +   +     +    ++   G+    K IT   +   ++S  +
Sbjct: 70  TIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLNYFGEDAIAKNITKPMVTKYLQSSLK 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFK 183
           K + S+   +   M  ++ +A+   Y+  NP        +P++ T     +  ++     
Sbjct: 130 KKSNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNNL 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +       F+F+  +G+R  ++     +++ +    I                   
Sbjct: 190 FAVIDRPDYLRLFKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTLAS 249

Query: 233 -ITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             +V LP   ++++                F              +++ K K+ +AG+++
Sbjct: 250 FRSVFLPKQAIEIVEWFKQHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKSKEAGIDR 309

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
             + H  R    +  A+ G   H +    G    +   E Y       +   ++  +
Sbjct: 310 KITTHFFRHTHISKLAEQGVPLHVIQKRVGHIKAETTREIYLHVT---KKMQEDMEK 363


>gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 296

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 82/282 (29%), Gaps = 19/282 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++  +         +  ++     +I     D     +TT  ++         H
Sbjct: 9   FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +   + + +  +N       P +        T  ++    S   +
Sbjct: 68  SWSTVKLDRNGLQFFYFHVLNKSWQWLNIVK----PPQVKHLPDILTPCEVAIVISLTRQ 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246
             + ++ F  L   GLR  ++    V  +        I+  K G    V LP   +  L 
Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182

Query: 247 MTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                          +                 K    +  ++K  S H +R   AT   
Sbjct: 183 YYWRTHRHPRWLFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHSYATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRI 339
           + G     +    G  +++    YT+  D   +   +   ++
Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITRKNTCEAINQL 284


>gi|28871096|ref|NP_793715.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854346|gb|AAO57410.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 347

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 109/327 (33%), Gaps = 14/327 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           PF+     R        R+     +             + + L G   +  +++    + 
Sbjct: 21  PFMAYYEKRGDAWRAQIRRKGYPTLS-ATFDTKAEAQRWAAELEGDMSRARFVDVREAEA 79

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+L   +  Y   +        ++         +  K        + +  + S  ++   
Sbjct: 80  TSLATALERY--ESEVTESKKGAKQERVRIKKWMESKFAGKSLASLRSSDMASYRDAEIK 137

Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 +    L  +  L+  A +   +    NPC ++  PK   +  R  T ++++   
Sbjct: 138 AGRSTATVRLDLAVISHLYTVATKDWGIEGLTNPCRALRMPKGSKQRERRPTADELKSLY 197

Query: 184 SFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               E S    +  E  + + +R S+        +Q  +  ++  K G   +V L     
Sbjct: 198 KAAGEISPELPVIIELAVETAMRRSELVTLRKDQIQGKVAFLEDTKNGERRSVPLSSRAR 257

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           +L+   P   +   +     ++ A   S +F     KA +     H +R  + +   + G
Sbjct: 258 ELIEGVPAPIKGGPLF----RLKADTVSNYFPLACEKANIQGLRLHDLRHEATSRLFERG 313

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
            T  E+ +  G KT+   + YT  + +
Sbjct: 314 FTMMEVASITGHKTLAMLKRYTHLSPQ 340


>gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           CGA009]
 gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX
           (xerC) [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125
           ++++         L+  +  ++     Q ++              + ++    +R+ + +
Sbjct: 72  MTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEATDVRAFMAA 131

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176
           R+       S ++ L  MR   ++  R+    +    SV  PK K    +P         
Sbjct: 132 RRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRL 191

Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              ++    +       +       L  SGLR S++     + +            G   
Sbjct: 192 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDTLIVHGKGN 251

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
              +      +LA           N               ++     +  +      G+ 
Sbjct: 252 KTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 311

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 312 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 360


>gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 95/327 (29%), Gaps = 15/327 (4%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL--KWLIS 76
           G     +R       R  Y  +      Y +                 K  TL    L  
Sbjct: 9   GNWYVQYRVPGLVSPRKEYFGKGEAGMNYAAKRADEIKSGHVFTIASLKGKTLYLDELAQ 68

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAI 134
            Y           + R S  S  +   +         +++ + +          + ++  
Sbjct: 69  VYLDFLKSQGKNESWRKSIASLVNNHFLPVLSYCPVDQLSFQDVMLVANRFSLKSIATRN 128

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           ++L  +R +  + + Q     NP  + ++ +      +  T +D+Q+         +  L
Sbjct: 129 RYLECLRTILNFGINQGLTTNNPMRTWKKAREPKREFK-LTFDDLQRILDKAQPHLKWAL 187

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAMTPI 250
              + L +    S+  R   + +  +   I+ + T T     +         +LL     
Sbjct: 188 EVLWELGTRPGNSELFRIKWEDIDYDGDVIRIRGTKTQTSDRLIPLTEYFKTRLLERQNQ 247

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
            +  + I  +  K+        F++   +AG+      + VR   A+     GA    + 
Sbjct: 248 AQSEYVIEYNGHKVT--NVKRSFRSALKEAGISYPVRLYDVRHLFASTMLANGADLKAVS 305

Query: 309 ATYGWKTVDQAE-TYTKGAD-RIRLGI 333
              G  T       Y        +  +
Sbjct: 306 KLLGHSTTRMTADVYYHELKGEKKRAL 332


>gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 331

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 78/291 (26%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126
           L+  I+++ +  H     +  +   + S      +      DF    +      +    +
Sbjct: 40  LQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCQHAHTFEDFTLVNLRAWLGAAVDAGK 99

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQ 181
                +             W  RQ Y+  N    +  PK         T        +  
Sbjct: 100 SRATIARRAAAAR--SFSSWCERQGYLDTNVAARLAVPKSGRSLPTVVTPTAAETLMVSS 157

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
             +   E  +     E L  +G+R S+ C   +  +         T K      V   + 
Sbjct: 158 QATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKVTGKGNKQRVVPFGNP 217

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGVN-KSAH 287
               L           +N  K   N                         + GV+    H
Sbjct: 218 AASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVVARAGKQLGVDGLGPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            +R  +AT   D GA    +    G  ++   + YT  +  R++     + 
Sbjct: 278 SLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAH 328


>gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 360

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 119/347 (34%), Gaps = 27/347 (7%)

Query: 10  FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + R   GKI +Y++    G RI    P    F       +          + P    
Sbjct: 5   HRVRRRLASGKIAVYHYAWRGGPRIDAA-PGSPEF-------VAAYNAAHAARDRPAHHD 56

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL+ LI+ Y+K+  +  LA  +R  +  +  QI    GD   + +    +R      + 
Sbjct: 57  GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 116

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  SA    + +  +  WA  +  + +NPC    R    +     WT+  +  F 
Sbjct: 117 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +        RL F   +++G R +D  +            ++  KTG  + + +     +
Sbjct: 177 AAAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLRQSKTGRHMLIPVAQPLRE 234

Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +      +   T    +  Q   +  F   F      A +   + H +R  + T  A A
Sbjct: 235 AMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIEGVTFHDLRGTAVTFLALA 294

Query: 301 GATAHELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342
           G +  E+ A  G  ++  AE      Y       RLG     ++   
Sbjct: 295 GCSVPEIAALTGH-SLKDAEGILSKHY--LGRDRRLGESAVAKLERH 338


>gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
 gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis IBL 200]
          Length = 369

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGIVALHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 329

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 83/290 (28%), Gaps = 36/290 (12%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVES 125
             +  +        + + ++  ++ +    ++                I   ++R  +  
Sbjct: 25  DALDRFHNELTVHKNASEHTVRNYIADATNLMEFLARDGNGDPIHLADIEIGNLRQWLLH 84

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +P +  + +  +R  F +  R    A NP   +  PK+ T       +   +  
Sbjct: 85  LSAQGASPGTLARRIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTVLQQSHTEDV 144

Query: 183 KSFWSE---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKT 226
            +   E                ++     E L  +G+R S+        +          
Sbjct: 145 LTQPFEPPAEDAKLTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVDWTAGLITVL 204

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAK-A 277
            K      +       + L      +           F+     ++N  Q         A
Sbjct: 205 GKGNKQRRIPFGGPSQRALTEWLEVRNHLASEGQEALFVGVRGGRINQRQVRDVVHKATA 264

Query: 278 TKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +A     S HG+R  +AT   + GA   ++    G  T+   + YT  +
Sbjct: 265 KRAKSPEISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVS 314


>gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
 gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA]
          Length = 328

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 86/298 (28%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y  +  +   L+ ++  S+      +     + + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALKFERQLSPHTLESYTRELAVLQRLGAQHAANVDLTQLQSHHIRRMMAQLHGD 78

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  FKW   R   V  NP   V  PK      +  + E        
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
                 E  + R   E     GLR S+     ++H++   +   +               
Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276
                          +         LA      E         +       Q  +  K  
Sbjct: 199 SKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315


>gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20]
 gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%)

Query: 14  ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++G+  + F          G+ IR       +   A   AL       +     +  
Sbjct: 7   YKLQNGEKYWGFEAYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V   
Sbjct: 66  VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184
             T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F  
Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225
              E +  +L   F L  Y+G+R S++     + +     +                   
Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270
            +   +  T++L D  +K L +    +    I       +  QF               +
Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     
Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364

Query: 328 R 328
           +
Sbjct: 365 Q 365


>gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
 gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473]
          Length = 276

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 83/261 (31%), Gaps = 20/261 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
           +  S+      ++  +G  +      +    +RS V   K      +S    L+++R   
Sbjct: 2   TITSYSRQLQALMELAGQMELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLSALRSFL 61

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLY 201
            W V Q  +  NP   V  P+      +    +++ +            + R   E +  
Sbjct: 62  DWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDLNDPLAVRDRAMLEVMYG 121

Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKE 253
           +GLR ++      +H+   +       K      V +    +  L              +
Sbjct: 122 AGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPMGATAVTWLQHWLALRDLFAPSDD 181

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
             F+ N  ++++A      F     K GV  +   H +R   AT   ++      +    
Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241

Query: 312 GWKTVDQAETYTKGADRIRLG 332
           G   +   + YT   D   L 
Sbjct: 242 GHANLTTTQIYTH-LDFQHLA 261


>gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12]
 gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15]
 gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
 gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330]
 gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12]
 gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15]
 gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium PC4.1]
          Length = 380

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 116/361 (32%), Gaps = 48/361 (13%)

Query: 14  ERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++G+  + F          G+ IR       +   A   AL       +     +  
Sbjct: 7   YKLQNGEKYWGFETYLGKDPKTGKDIRTKRRRFKSKAEA-QIALNRLLVDFKEKQEFKIN 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V   
Sbjct: 66  VTTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEW 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184
             T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F  
Sbjct: 125 HKTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLK 184

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IK 225
              E +  +L   F L  Y+G+R S++     + +     +                   
Sbjct: 185 NTKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQV 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------S 270
            +   +  T++L D  +K L +    +    I       +  QF               +
Sbjct: 245 PKTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVN 304

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     
Sbjct: 305 DWLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTP 364

Query: 328 R 328
           +
Sbjct: 365 Q 365


>gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 328

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++T+ GK +    +    R+R            +          R+          TLK 
Sbjct: 4   KQTKDGKWLVEIDRKGIPRVRKSIVV-KEDAERFEREYLSMHLARKKDEPTDL--RTLKE 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+  + K     +L+     S +   D +    G+    ++T +        R  +    
Sbjct: 61  LVELWYK-YQGINLSDG--ESRKRKLDDMASALGNPQACRLTAEQFVEHRYKRLQSGISA 117

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +       +  +F    + + +     ++  +  K +   +   + + ++        G
Sbjct: 118 KTVNNQHGYLSAVFNKLRKLKVIDYGNPINEVDFIKIQERQLSYLSVDQIKLLLDTIKIG 177

Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                     +  L +G R  ++ R   + L N   + +  K+    T+ L   F   L 
Sbjct: 178 CVNQSTWYVAQICLRTGARWGEAERLRFKQLHNCRVTYEFTKSKKTRTIPLDGEFYNDLI 237

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGA 302
                K                    F+   T++ +      ++H +R   A+     G 
Sbjct: 238 RWAGYKNPDDRVFTNCIG-------AFRRAVTRSEIELQKGQNSHVLRHSFASHFIMNGG 290

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G   + Q  TY        L  ++      +  
Sbjct: 291 NILTLQKILGHADISQTMTYAH------LAPEHLADAVRLNP 326


>gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18]
 gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18]
          Length = 304

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 30/303 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YR 112
           R     L      +         +  +  ++      + R +G+                
Sbjct: 4   RTADLDLTGAAEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAPGVVCREVTVGFLD 63

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           ++ +    +  +    + +S  +   ++R  F WA     V  NP  S+   +   +   
Sbjct: 64  QVFSAEAVTESKRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPV 123

Query: 173 PWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             T  + ++              + R   E LL +G+R  +     +  +  +   ++ +
Sbjct: 124 FLTTAEKKRLLKELKGRTDFSTLRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVR 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT 278
             G +  V+     ++ L    + +       + +         ++   Q +        
Sbjct: 184 AKGNVPQVKFIKTDLRTLLRRYLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLR 243

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           KAG+ K  + HG+R   AT    A      +    G + V   + YT   D      +  
Sbjct: 244 KAGIEKELTPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEAL 301

Query: 337 RRI 339
            R+
Sbjct: 302 ERL 304


>gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str.
           Houston-1]
 gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1]
          Length = 326

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQI----IRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133
             +A  +  ++E    Q      +  G           R I  +   +       +  S 
Sbjct: 37  RRMATYTAQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRAYLAYRRKHDISARSL 96

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186
            + +  +R  F +  R+   +I     V  PK      +P   +          Q ++  
Sbjct: 97  SRGMAGIRSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKSALHLVKQENQQENEP 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKL 244
              ++       L   G+R S++     +   +   +    T K G    V L     + 
Sbjct: 157 WIIARNTAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTGKGGKTRLVPLIKVVYEA 216

Query: 245 LAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHGVRKFSAT 295
           +           ++N      A              +      G+    + H +R   AT
Sbjct: 217 IQNYLKCCPYPLLDNQPMFRGARGGPLQPAIIQKTVRNLRAYLGLPETATPHTLRHSFAT 276

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                G     +    G   +   + YT   D   L
Sbjct: 277 HLLSRGGDLRTIQELLGHACLSTTQVYTH-VDTKHL 311


>gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC]
 gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
 gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC]
 gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601]
          Length = 320

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 37/292 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS- 132
           +Y +       LA  +   +     ++   + D      ++T  H+R  V        S 
Sbjct: 17  QYLEHVRVEKRLAARTLTLYTLDLQRLAAFAADAGLPLLRLTGAHVRRFVAQMHAAGRSG 76

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 L+  R  + WA RQ  V  NP   V  PK      +    ++  +       G+
Sbjct: 77  RGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHEESGA 136

Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232
            P L        E L   GLR  +     V          +                   
Sbjct: 137 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWIDLQAGEAHVFGKGAKR 196

Query: 233 ITVELPDGFMKLLAMTPIGKETFF----------INNDKQKMNATQFSIWFKAKATKAGV 282
            +V +     + L      +   F          +     +++A    +  + ++ +AG+
Sbjct: 197 RSVPVGRAAAEALRGWLAVRAQPFGGAAADAALFVGRRGARLSAQSVWLRLRQRSQRAGL 256

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 257 TTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 307


>gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
 gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436]
          Length = 317

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 94/296 (31%), Gaps = 35/296 (11%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG 122
           +   T   +++ +          + ++   +    ++ + + G  D    ++ T  I + 
Sbjct: 5   RANGTSSDVLNGFLDYLTVEKGASAHTVAGYRRDLERFLVERGIADTPLAQVDTVAIDAH 64

Query: 123 VESR----KHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +          P     S  +   S+R LF++AV ++ ++ +P   V++ K      +  
Sbjct: 65  LTQLSLGFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAI 124

Query: 175 TKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT 226
           + E++              G +     E L  +G R ++        L            
Sbjct: 125 SLEEIAAMLEVAGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLF 184

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW 272
            K      V L    ++ L    +      +   K ++              +       
Sbjct: 185 GKGRKERLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEI 244

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               A  AG     S H +R   AT   + GA+  ++    G  +V   + YTK +
Sbjct: 245 ISQTAVAAGCVSEVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVS 300


>gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
 gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
          Length = 378

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 128/374 (34%), Gaps = 46/374 (12%)

Query: 14  ERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPT 69
           E+  +G I    YY     G+R R     +     +   A        E  I S   +  
Sbjct: 4   EKQANGNIKFIEYYKDPYTGKRQRAYVTLDRYTKQSETKARRLLNEIIEYRIKSSGDQFV 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128
               L+ E++ S    ++   +   +    ++I    GD    + I  + ++  ++  K 
Sbjct: 64  RFGQLVEEWKTSHS-KTVKARTMKVYRHPIEKIKDFIGDDVLVKNIDARLLQKFIDYLKD 122

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------- 178
             S  +       + ++  +AVR EY+  NP  +V  PKRK    +              
Sbjct: 123 RYSDNTINLIKQPLNMMLDYAVRMEYIMSNPMKNVVTPKRKKMSKKQLEDRYLETEQNQK 182

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
           + +       G+      E +  +G+R  +       H+      IK +           
Sbjct: 183 IIEQLRNPIYGNHIANFSEIIFLTGMRPGELLALRWDHIDFEKLKIKIEYTLDYTTNGHA 242

Query: 229 ---------TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIW 272
                     G+  T+++P    +LL      + T        FI N  + ++    +  
Sbjct: 243 NAELGSVKNDGSYRTIDIPLRVKELLVEELNYQNTNDLRSDFVFITNKGKHLSINTINRR 302

Query: 273 FKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            K  + K  G+  ++H  R    T+ A+ G     +M   G   V+   + YT   D  +
Sbjct: 303 IKKTSEKLYGIVITSHSFRHAHITLLAELGIPLKSIMDRVGHTDVNTTIKVYTHATD--K 360

Query: 331 LGIKNSRRISSVVD 344
           +G +   +I+  V 
Sbjct: 361 IGKQMMDKINKFVP 374


>gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 83/276 (30%), Gaps = 19/276 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +++ TT   L     +     ++   ++              G       T   +R+   
Sbjct: 22  KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               T    S+    + S+R+ F     +E +        +            + E++  
Sbjct: 79  HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134

Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             +     G   R A      +GLR S+ C   V  +     +  +   K G      L 
Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194

Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            G + LL             F        ++  Q +  F +    AG+NK  + H +R  
Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +AG     +    G   +     YT  A +
Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 290


>gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 29/341 (8%)

Query: 18  HGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           HG   + F         RL   +E     A   A    T   E     +K+      +  
Sbjct: 21  HGSHWFRFTYRGKTYTKRLGRVNELPLTSAKHIAGKLRTQIIENQYLEKKEVPLFSEVAE 80

Query: 77  EYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           +Y +       + +  +    E    +++   GD      +   I S  + R      PS
Sbjct: 81  KYFEWYKTERANASRRTIRETERRVKKLVEVFGDKTLDYFSEFLIDSYKQDRIKEGVKPS 140

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L  +R + +  V++  +       ++  K   E +R  + E+++       +  +
Sbjct: 141 TVNRELNILRAILR-KVKEWGMYSGDLPRIKTYKVDDERVRYLSPEELKALIDACPDWFK 199

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVELP 238
           P    +F   +GLR S+        +                  + +       + V   
Sbjct: 200 P--VVKFACLTGLRASELFSLTWDMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLRE 257

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               +       G            +    +   FK    KAG+ +   H +R   A+  
Sbjct: 258 VKARQEERWIDYGYVFTNRMGKPYSVEGQGYKRVFKTACEKAGIRDFRFHDLRHTFASYL 317

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             +G   + +       +    + Y        L  ++ R+
Sbjct: 318 VMSGVDFYTVQELMRHSSPRMTKRYAH------LSPEHIRK 352


>gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
 gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRS---GVESRK 127
            I+ +  +       A N+ +++        +   +       +    + +     +++ 
Sbjct: 6   WIALFLDAQAAEMGAAKNTLMAYARDLSDFSQWVENKSLSLATLQQSDVEAYLVHCDAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              S+  + L++++ L+++A  +     NP L ++ P R     +  ++ ++        
Sbjct: 66  LAQSTRARRLSAVKQLYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAEVDGLLQAAR 125

Query: 186 -WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
               G   RL      E L  +GLR ++     V   + N    +   K G    V L  
Sbjct: 126 SHGRGPADRLRNTCLMELLYATGLRVTELVSLPVAATRGNPELLMVRGKGGKERMVPLSP 185

Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV- 282
                L      ++       ++                 +   +F +  K  A  AGV 
Sbjct: 186 PAQVALRDWLAHRDAMEETARQKGLPASPFLFPSRSKDGHLTRHRFYLLIKDLAVAAGVS 245

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    +    G   V   E YT   +  
Sbjct: 246 PSKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER 294


>gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 394

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 96/332 (28%), Gaps = 19/332 (5%)

Query: 25  FRKGHG-RRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPT---TLKWLISEY 78
           +R G   RRI +    + +   A   A  L             R       T++ L   Y
Sbjct: 47  YRIGGRQRRITIGSYPDWSVAAARTEAGNLKREVDLGNDPMGERHADRAAPTMRDLWDRY 106

Query: 79  RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS---AI 134
           ++       A  S+      ++++ +   G      +T   I +       +  +   A 
Sbjct: 107 KRDHLPRK-AARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALHRDITVSRGTPVRAN 165

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + +  +R  F  A+R E++  NP       P+ K +      +                 
Sbjct: 166 RVIEVVRRAFNLAIRWEWIEKNPASGQLRNPEEKRQRYLSPEELSRLSAALTAHHEPVSA 225

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            A   L+ +G R S+   A  +    +     K                   L +    +
Sbjct: 226 DAIRMLMLTGARKSEVLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIR 285

Query: 253 ETFFINNDKQKMNATQ----FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
           ET             Q        + A    A +     H +R   A++    GA+   +
Sbjct: 286 ETAEGPYVFPGKGGDQPLTDVKRSWAAVCKAADITGARIHDLRHSFASLLVSGGASLPII 345

Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRR 338
            A  G   V   + Y    D  +R    +  +
Sbjct: 346 GAMLGHTQVQTTQRYAHLYDEPLRAAADHVGK 377


>gi|269203657|ref|YP_003282926.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262075947|gb|ACY11920.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 345

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + +        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRNGFNIDNGITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   +++    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E     +    + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEKEKFISVTEYEMLKEHVKKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +     +   K+      +   ++H +R    +     G
Sbjct: 242 DVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 329

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 99/295 (33%), Gaps = 48/295 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTKHIRSGV 123
           Y ++    + + N+  +++       R                 D D   I  + ++S  
Sbjct: 23  YLETI--KNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKSIK 80

Query: 124 ES------------RKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
                         R ++  +  + + +++  FK+   + + +  NP   +E PK     
Sbjct: 81  LRDLYAFMSFIEKYRNNSAYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQ 140

Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               T +      S   + +    +        L  G+R S+ C   ++ ++N+I  I  
Sbjct: 141 PVYLTLDQSIHLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILVIIG 200

Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276
           +      TV L +  +K +                K+  F+++  + +N     I  K  
Sbjct: 201 KGN-KERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKH 259

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              AG+     + H +R  +AT+    G      L    G + +   + YT   +
Sbjct: 260 IKNAGLTDGKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 373

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 93/287 (32%), Gaps = 37/287 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127
           LI  +          +  +R ++     Q+       +        +T +H+++ +    
Sbjct: 66  LIEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLF 125

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 SS  + L + R  F++ +R   VA N    V  P+++    R    ++      
Sbjct: 126 RKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLD 185

Query: 185 F-----------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                                  +     E L  SGLR S++    V  +Q +   ++  
Sbjct: 186 SATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVM 245

Query: 228 KTGTI-----ITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKAT 278
             G+      ++          L   P      +   F+     ++N  + +   +    
Sbjct: 246 GKGSRERLAPLSDTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCR 305

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AG+  +   H +R   AT   +AGA    +    G + +   + YT
Sbjct: 306 RAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYT 352


>gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
 gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597]
          Length = 315

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 103/301 (34%), Gaps = 33/301 (10%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSG---VESRK 127
            IS + ++       + N+ +++                     T   + +     +++ 
Sbjct: 9   WISSFLEAQAAEAGASRNTLLAYGRDLKDFAGWLERQHHAIDSATRADVEAYLTDCDAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L+++R LF++A  + + + NP + +  P R  +  R  T +++        
Sbjct: 69  LSQATRARRLSAIRQLFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLDAAR 128

Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                  +  +     E L  +G+R ++     +   + +   +    K G    V L  
Sbjct: 129 TKGRNESDRLRNTCLMELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERMVPLSP 188

Query: 240 GFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
              + LA                    +  F   + +  +   +F I  K  A  AGV  
Sbjct: 189 PAREALAAWLAAREARDEALPRGARPSRALFPSRSAEGHLTRHRFYILIKEIALAAGVSP 248

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
              + H +R   AT   + GA    +    G   +   E YT   + R+R  ++    ++
Sbjct: 249 AKVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHPLN 308

Query: 341 S 341
            
Sbjct: 309 R 309


>gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
 gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B]
          Length = 391

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 103/337 (30%), Gaps = 22/337 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPK-----REYINSP 64
            ++ +  G     ++   G+   +++    + +   A   A    T        +     
Sbjct: 38  VRDTSLVGTYYQRYKNAAGKTAHVKIGRASDISLKAARARAQQLRTDIQSGSDPQADTRQ 97

Query: 65  RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           RK   T     +  Y   A        +         ++  + G     +I+ + ++   
Sbjct: 98  RKAVPTWNAFFTHSYLPHAKQKKRTWKNDADMHRL--RLGPRFGATPINRISRQEVQQFH 155

Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + +   P++A   L  +R     AV    +  NP   V++     E  R  ++ +++
Sbjct: 156 NELRESGIAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLSEVELR 215

Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
           +  +     E      A  +LL +G R  +   A    +           T      + +
Sbjct: 216 RLLAVLKSHENRPVSCAVLWLLCTGSRVGEMLAAEWPDIDRGNRVWVVHATNSKSKKLRS 275

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRK 291
           + L D  + +L                          +  +      AG+   + H +R 
Sbjct: 276 IPLNDVALGVLDELQTLPRYQPDGRLFIGKRGPLGTINKVWYGIRDAAGLENFTLHCLRH 335

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A++  ++G + +E+    G         Y+  +  
Sbjct: 336 SHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQE 372


>gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 288

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 17/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           L           +L+  ++ S+     +  R  G     ++  + +R+       +  S 
Sbjct: 9   LRRRMIDDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 67

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q + ++R  F   +    +           +   +       +++ +F        
Sbjct: 68  PALNQTVCALRFFFGVTLGHGEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 122

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + R A      +GLR S++    V+ +      I+    K G    V L    + +L + 
Sbjct: 123 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 182

Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                     F   ++ + ++        ++  T AG++K  + H +R   AT   ++G 
Sbjct: 183 WRLARPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGT 242

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G   +     YTK ++
Sbjct: 243 DIRIIQVLLGHNNLSTTARYTKVSN 267


>gi|322378156|ref|ZP_08052641.1| prophage L54a, integrase [Streptococcus sp. M334]
 gi|321280886|gb|EFX57901.1| prophage L54a, integrase [Streptococcus sp. M334]
          Length = 379

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 122/370 (32%), Gaps = 48/370 (12%)

Query: 18  HGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------YINSPRKKP 68
           +GK  YY   F     +  ++     S    A   A      K E             K 
Sbjct: 8   NGKYRYYEKYFDLEESKWKQVSITLTSKTRQAQKQARMLLEEKIENKKENIEKEKTEVKK 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+K +  EY K      L  ++  S +      IRK  D+    +T++ +++ +     
Sbjct: 68  ITVKEVYEEYLKIRE-SELKRSTFKSQKYTIIGEIRKLEDYLLVNVTSRIVQNILLELPC 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180
           +          + + FK+ +   Y++ NP  +V  PKRK    +   K++          
Sbjct: 127 SAEHRKNKKVLLNLFFKYCLNVGYISENPIDNVVLPKRKKNLKKVRKKQNKYLTRVEVVQ 186

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
              F     +  + RL  EF+  +GLR  +     ++ +     +++ + T         
Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTLEDIDFENKTLEVKHTLHTSGSKAE 246

Query: 232 -----------IITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         + + D  ++++        +  F    +        F+ + K    
Sbjct: 247 IFLDSPKSLASYRVIGISDRVLEIIEEYLLMEKEGRFIFTKNGNPFMIFSFNDFLKRSFK 306

Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           ++G+ K      + H  R    ++ A+       +M   G          YT   ++++ 
Sbjct: 307 RSGIQKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTEKMKS 366

Query: 332 GI-KNSRRIS 340
            I +   ++ 
Sbjct: 367 NITEKLDKLD 376


>gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 341

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 95/354 (26%), Gaps = 38/354 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y      +R+R  +      +      L                   L
Sbjct: 4   RKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEALRFEREQLVQRGDLDIDYTPAESAAQRL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+S++ +  H  SL+     +     + +    GD        +   +  + R     
Sbjct: 64  KTLVSQWYE-LHGRSLSDG--KARLDKLNILCDNLGDPAVADFDREVFANYRKQRLAGEF 120

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                         ++  +    +R +F    R  +      L   R  R++E    +  
Sbjct: 121 SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY 180

Query: 177 EDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           ED  +   +  + S  +   +     L +G R S++ +     +  N  +    K+    
Sbjct: 181 EDDIKRLLYECDNSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           TV +     KL+                       F              +  H +R   
Sbjct: 241 TVPISAELHKLIPKMKGRLFANA---------YDAFGQAIDRAKLVLPTGQLTHVLRHTF 291

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           A+     G     L    G  T+     Y+           +     S+   D 
Sbjct: 292 ASHFMMNGGNILVLQQILGHSTIQMTMRYSH------FAPDHLEAAVSLNPYDR 339


>gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 354

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 16/318 (5%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G + +  FR+      +       T   AY+  L      R   + PR +    +  +
Sbjct: 6   RRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHR---FEEAV 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
             Y +          +  S+ S    +          +IT + I   V +RK T    ++
Sbjct: 63  ERYFQETRVR---PKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTT 119

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  + V+     R  ++  NP  +  +   +    R       +  +   +     
Sbjct: 120 IRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSL 179

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAM 247
           R A    + +G+R  +     +  +  N   +  ++T T     +P     +     L  
Sbjct: 180 RPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLD 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
            P    + ++               F     +A V N   H +R   A+     G   + 
Sbjct: 240 EPGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYR 299

Query: 307 LMATYGWKTVDQAETYTK 324
           L    G   +     Y  
Sbjct: 300 LSRILGHSGLQMTARYGH 317


>gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
 gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b]
          Length = 323

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 33/291 (11%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS---GVES 125
           +  IS + ++       A N+  ++                   +     + +     ++
Sbjct: 5   RHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGDTIEQADQSRVEAYLVHCDA 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++  + L++++ L+++A  +     NP ++++ P R  +  +  +++++      
Sbjct: 65  QGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLSEKEVDLLLGA 124

Query: 186 WSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                +            E L  +G+R S+     V   + N   +    K G    V L
Sbjct: 125 ARTHGRSATDRVRNTCLMELLYATGMRVSELVALPVAAARGNPQMLLIRGKGGKERMVPL 184

Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 ++                   P     F  +     +   +F +  K  A   G
Sbjct: 185 SPDARDVMVEWLKLRDAADAAARKAGKPGSPFLFPSSGKIGHLTRHRFYMLIKELAVAGG 244

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           V     + H +R   AT     GA    +    G   V   E YT   +  
Sbjct: 245 VSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEER 295


>gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510]
 gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510]
          Length = 321

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 30/283 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYR-----KITTKHIRSGVES 125
              + +S     ++ ++  ++ +        +    G           +     R+ +  
Sbjct: 26  WRRWLESEKV--VSRHTLSAYTADVAEFLRFLTEFHGGSPPSLNDLGDLKAADFRAWMSR 83

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
                   +S  + L ++R LF+W  R   +      ++  PK K    RP T       
Sbjct: 84  LAMDGLVGASRARKLAAVRNLFRWMDRGGRLHNPAVATLATPKVKRPAPRPLTEIDADRL 143

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E+ ++ +     G + R  F  L   GLR S++     +          T K      +
Sbjct: 144 LEEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAPLGDTLRVTGKGRKDRMI 203

Query: 236 ELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
            +     + +                 F+     ++NA+      +      G+    + 
Sbjct: 204 PILPAVTEAVRAYLDSCPFTLAPDGPLFVGTRGGRLNASIAQHQMQKLRALMGMPDNATP 263

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT     G     +    G  ++   + YT   +  
Sbjct: 264 HALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ 306


>gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
 gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp.
           wRi]
          Length = 328

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 94/307 (30%), Gaps = 45/307 (14%)

Query: 74  LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG----VESR 126
            I+ Y  +      A  N+  S+ S   Q              +   +I+         +
Sbjct: 14  YITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQK 73

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQF 182
           K+  SS  + +++M+  +K       +  NP  +     + PK      +  + E++   
Sbjct: 74  KYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLL 133

Query: 183 KSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIK 225
                +            +     + L  SG+R S+     +  + +         + I 
Sbjct: 134 MDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIII 193

Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274
             K+G    +   +  ++ L                    F  +   + +   +     K
Sbjct: 194 KGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMK 253

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329
             A K  ++    S H +R   AT   ++GA    +    G   +   + YT  A+    
Sbjct: 254 ELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLK 313

Query: 330 -RLGIKN 335
            +L   +
Sbjct: 314 DKLADSH 320


>gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris
           TIE-1]
 gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1]
          Length = 323

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 34/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125
           ++++         L+  +  ++     Q ++   +          + ++    +R+ + +
Sbjct: 24  MTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEATDVRAFMAA 83

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176
           R+       S ++ L  MR   ++  R+    +    SV  PK K    +P         
Sbjct: 84  RRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRL 143

Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              ++    +       +       L  SGLR S++     + +            G   
Sbjct: 144 ADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDTLIVHGKGN 203

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN 283
              +      +LA           N               ++     +  +      G+ 
Sbjct: 204 KTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGARGGPLSPRIIQLAMERLRGGLGLP 263

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 264 DSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYT-GIDTERL 312


>gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3]
 gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1]
 gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1]
 gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3]
          Length = 394

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 117/389 (30%), Gaps = 59/389 (15%)

Query: 12  TKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            K +T+ G+   +          G+R         T   A ++A      +       + 
Sbjct: 5   QKYKTKDGEKWMFKMDVGIDPATGKRKTTTRRGFKTKKEAQLAA-AKLYDEINNGGYVKD 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
                K    E+       +  +++  + +     ++R  G+   + +T K  +  +   
Sbjct: 64  TNILFKDFAQEWLAIYSETA-KISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDL 122

Query: 127 KHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K    +        T+ R++FK A+  E +  NP    + PK+K       +     +F 
Sbjct: 123 KKKGYADNTLDGIHTTGRMIFKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMKFL 182

Query: 184 SFWSEGSQPRLAFEFLL-----------YSGLRCSDSCRAGVQHLQNNIFSI-------- 224
                    + A E  L           Y+G+R  +      + +     +I        
Sbjct: 183 EKHELALFLKTAQEHGLAMDYVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTLYS 242

Query: 225 -----------KTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINN 259
                        +  G+I T+++    + LL                        F   
Sbjct: 243 PRNNERYYQLLPPKTQGSIRTIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARP 302

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                   +  I  K     A ++K  + H +R    ++  +AG    E+    G   ++
Sbjct: 303 SGFPEVPKKIEIRMKRLLRIANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIE 362

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVDS 345
                Y        L  + S++ S ++ +
Sbjct: 363 TTMNIYAHLT--KDLEERASQKFSELMSN 389


>gi|300114658|ref|YP_003761233.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540595|gb|ADJ28912.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 321

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 16/316 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        RK   ++I      +      ++  +     +  + ++   +  T   +
Sbjct: 5   RKRGNSWNVQIRKRGHKQIT-KSFKDRKLALTWIKKVENEMERGVFQDTTEAQRITFNTI 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           + +Y++ A             ES    +    GD+    IT   +    + R  + +  +
Sbjct: 64  LDKYKQRALITKRG---IAQEESRIKYLKEWLGDYSLAGITPAVLSKFRDWRGLSVAAQT 120

Query: 133 AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
               L+ +  +  +A++         NP   +  PK      R     + +      SE 
Sbjct: 121 VKHDLSLISRIINYAIKDLGYSLPYGNPVQQIRMPKIPRGRTRRLEPGEQELLLENASES 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            QP     F L + +R  +      + +     ++   +T T I   +P     +     
Sbjct: 181 LQP--VILFALETAMRRGEIANMEWRDVDLKQRTLHIPETKTGIPRTIPLSSEAI----K 234

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           I KE         K++A   +  F     KAG+ +   H +R  + +   + G    E+ 
Sbjct: 235 ILKEIPLGFGPIFKVHADSMTKAFDRATNKAGIEDLRFHDLRHEATSRLFEKGLNHTEVA 294

Query: 309 ATYGWKTVDQAETYTK 324
           +  G K +     YT 
Sbjct: 295 SITGHKDLKMLLRYTH 310


>gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 288

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 92/263 (34%), Gaps = 20/263 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130
               +Y K+     L+ N+  S++    Q +      +    ++    I + +   KH  
Sbjct: 6   QAFIDYLKND--KKLSDNTVDSYKRDIIQFLEYLEKINIGCFEVKKATIINYMNLLKHKN 63

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +  + L+S++  +++      +   P  +++ PK + +     + + + +  S+  
Sbjct: 64  RSQATISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQVDKLLSYEF 123

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +GL+ S+     +  +  N       K+     + + +  + 
Sbjct: 124 EKSEKGLRDKAIIEVLYATGLKVSELISLRIDDVNLNYGY-IYCKSAKERFIPIGESAVD 182

Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295
            L             +  F+N   + +         K        G + +   +R+  A 
Sbjct: 183 ALQNYMSVRKNIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGFDITPSILRRSFAK 242

Query: 296 ISADAGATAHELMATYGWKTVDQ 318
              + GA    +    G+K+V+ 
Sbjct: 243 HLLENGADIRSVQEMLGYKSVNS 265


>gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp]
 gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp]
          Length = 335

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 90/313 (28%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R  +  +        +          +   P+ +   L  L + Y
Sbjct: 9   GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIESPAWTPKPKDRRR-LSELCTRY 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
            +  H  +LA     +       + +  GD    K+T         +         +   
Sbjct: 68  HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRNALLKAGIQGKTLNN 124

Query: 136 FLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR- 193
            L  ++ +F    R   +   NP   V   + +   I   +   + +      E +    
Sbjct: 125 RLGYLKAMFNELHRLGDIDYPNPLAKVRPLRLQERPISFLSTCQIAELLDALDERTTSPG 184

Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L     L +G R  ++     + ++N + +    K+    ++ +     K L +    
Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDSALEKALHVYFKR 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              F             FS   +  + K    ++ H +R   A+     G     L    
Sbjct: 245 HGLFTNCML-------TFSRVLEKTSIKLPAGQATHVLRHTFASHFVMRGGNILTLQKIL 297

Query: 312 GWKTVDQAETYTK 324
           G  ++     Y  
Sbjct: 298 GHTSLAMTMRYAH 310


>gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
 gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata]
          Length = 323

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 98/315 (31%), Gaps = 42/315 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
           ++  +         LA NS +++     + +      G      +    +     + +  
Sbjct: 8   VVERFLDHLAGERGLARNSVLAYRRDLRRYLEHLSLRGVRSLADVDESEVAEFAATLREG 67

Query: 130 P--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    SS  + L S+R L ++A R+  V  +    V  P       R  T + +  
Sbjct: 68  AGEHPPLAASSVARMLVSVRSLHRFAAREGEVTSDVSRPVRPPTPPRRLPRALTVDQVVA 127

Query: 182 FKSF------------WSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                            +EGS+   A    E L  +G R S++    V  L  +  S++ 
Sbjct: 128 VLRAASTSAAGGPGGDPAEGSRQLRAVALLELLYGTGARISEAVGLDVDDLDLDAASVRL 187

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKA 275
             K G    V L     + LA   +       +                +        + 
Sbjct: 188 LGKGGRARVVPLGRYAGEALAAYLVRARPVLASRRASPAVFLSRRGTRLSRQSAWTVLRT 247

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRL-- 331
            A  AGV   S H +R   AT   D GA    +    G  +V   + YT    DR+R   
Sbjct: 248 AAVAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVY 307

Query: 332 GIKNSRRISSVVDSD 346
              + R + +   + 
Sbjct: 308 ATSHPRALGTSRPAQ 322


>gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae
           WSM419]
 gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 30/284 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRK 127
            +  S A    L+  +  ++E    Q +    G         D R +    +R  +  R+
Sbjct: 20  RWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDIRALRPADLRGFLAQRR 79

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
              + A      L  +R   ++  +          +V  PK+     +P T  D      
Sbjct: 80  KGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPKSLPKPLTDRDALKVVT 139

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236
              Q        ++       L   GLR +++             S++    G     V 
Sbjct: 140 TDSQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFTETARSLRVTGKGGKTRIVP 199

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAH 287
           L     + +              +     A              +   +  G+    + H
Sbjct: 200 LIAAAAEAVTTYRKLCPYHIEAGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPH 259

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 260 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 302


>gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 284

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 85/268 (31%), Gaps = 16/268 (5%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
           +  + ++          +  +  ++E    Q+++       G      I     R     
Sbjct: 2   EEYVDDFLDYLFRIRGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPLRRRIASN- 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              TP +  + L+++R   ++   Q  +        E  K      +P  +  +++    
Sbjct: 61  ---TPRTVAKKLSAVRSFVRYLQDQRNL-SILLEGDESVKVPRTLPKPIEERYIREVLEA 116

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  RL    L   GLR S+      + +          K G    + LP   +++L
Sbjct: 117 --ADPTERLILGLLYGMGLRISELAGLRREQIDREWIR-IHGKGGKTRQLPLPQAVLQML 173

Query: 246 AMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                      +     K  ++A Q     +      G+  + H +R   AT   D GA 
Sbjct: 174 DHYLALHPAGVYLFEKGKAPLSAAQIRYRVQKLFRSRGIKATPHQLRHSFATHLLDHGAR 233

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331
             ++    G  ++   + YT+     +L
Sbjct: 234 ISDVSELLGHASMATTQIYTQLGSSRKL 261


>gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M]
 gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M]
          Length = 385

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 96/349 (27%), Gaps = 34/349 (9%)

Query: 6   RLPPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            +P  + K     G+  Y  R          G               A+ +   G     
Sbjct: 4   SVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIG 63

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
                PR    +L  + ++Y  S     ++  +   +  +++ +I  + G     +I+ K
Sbjct: 64  ARRFDPRLGRASLSAIWTQYSASKQPA-VSPKTWSGYAQHWELRISPRFGHVPVDEISRK 122

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            ++  +      P + +  L  +R +   A     + INP   V   +        +   
Sbjct: 123 DVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSA 182

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIK 225
                 +              L ++GLR S+     V  +              ++    
Sbjct: 183 TEVAALAHACGDQGD--IVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI 240

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAK 276
                            +++      +       ++   +                +   
Sbjct: 241 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA 300

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
             K G+   + H +R   A+++  +GA    +  T G  T       Y+
Sbjct: 301 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-PSS 132
           Y         +A N+  S+     +  +   D    D  K+    +   + + +   P +
Sbjct: 13  YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSEFLVALRRGDPDT 72

Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                    A + L ++R L ++   +    ++   +V  P       +  T + +    
Sbjct: 73  GAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132

Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                          + R   E L  +G R S++    V  +     S+    K G    
Sbjct: 133 EAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRL 192

Query: 235 VELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V +    +  L    +                F+N    +++        +  A +AG+ 
Sbjct: 193 VPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIT 252

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|52841304|ref|YP_095103.1| integrase, phage related [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52628415|gb|AAU27156.1| integrase, phage related [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 393

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 111/371 (29%), Gaps = 35/371 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYM-------SALTGSTPKRE 59
            +       G   +++R    G  +++ L      +   A             G  P   
Sbjct: 25  GLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIEN 84

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                 K+  T   LI  + ++    +         ++   + II   GD    K+ TK 
Sbjct: 85  TKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIK-YQIDSE-IIPLLGDTVLDKLQTKD 142

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKT 168
           I   ++       P  A + L++++ +  +AV + Y+  NP  ++         +P+ + 
Sbjct: 143 ITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERV 202

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                                   RLA + ++ +G+R  +   A                
Sbjct: 203 LSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPP 262

Query: 229 TGTI----ITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +     + + L +   KLL                     M+        K    + G
Sbjct: 263 EHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNRVG 322

Query: 282 VN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNS 336
           +   +AH +R+  AT   ++       +    G K      TY K      R       +
Sbjct: 323 IPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWA 382

Query: 337 RRISSVVDSDD 347
             I+ ++ S D
Sbjct: 383 NHIARLISSKD 393


>gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 370

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 85/267 (31%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
            I+ +         + ++  ++       +R  G      IT   +          +K +
Sbjct: 97  AIAVFVAYMQRTRYSESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIAKKLS 156

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S   Q L ++++      +           V+RP+         +K++++Q     +  
Sbjct: 157 ASYQNQVLNAVKLF----CKVHAGVKLDPELVKRPRSAKTLPNVLSKQEVKQLLYATT-N 211

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
            + R+    +   GLR S+      + + ++     I   K      V L    ++ L  
Sbjct: 212 LKHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQLRE 271

Query: 248 TPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                             +K       +  K   TK  + K  + H +R   AT   ++G
Sbjct: 272 YYKIYRPIKWIFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHSYATHLLESG 331

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G K+    E YT  +++
Sbjct: 332 TDIRFIQELLGHKSSTTTEIYTHVSNK 358


>gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424]
 gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424]
          Length = 364

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 107/354 (30%), Gaps = 38/354 (10%)

Query: 11  VTKERTRHGKIIYYFR---------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + +   +  K  Y  +          G  +RI             Y   L         +
Sbjct: 2   IKEYIDKDNKKYYEIKNHYIGKDIFTGKEKRISKKGFRTKKEAENYCIKLKSEF---LEV 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                +  T + +   + +      +   +  S   YF   I+    +   + I     +
Sbjct: 59  GFKTNQDYTFQDVYDLFIEQYK-RKVKDTTYYSNTKYFKQHILPFFANIKIKDIKLVVCQ 117

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +     K   S+  ++ T + ++  +A++ E ++ N     + P+   +    +  ++
Sbjct: 118 KFINDLAKKFKKSTIQRYRTLVNLVLDYAIKLEIISTNYMKYTDIPRAIEKRKDNYYSKN 177

Query: 179 M---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
                      +   +    F  L ++G+R  + C    + +     ++   K       
Sbjct: 178 ELLEFLRLVKDNFSFEIYCIFRVLAFTGVRRGELCALTWKDVDLKNKTLTVSKNMTFIKG 237

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                      +   + L D  + +L           I+     +  ++   + K    K
Sbjct: 238 GYRISETKTQASNRVIYLDDETVNVLKQLRKESTFLPIDTSIFDLTISRICYYSKLIHEK 297

Query: 280 A-GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              + K S HG R   AT+  ++G    ++    G   +    + YT   +  +
Sbjct: 298 LPNLKKISVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKK 351


>gi|254451033|ref|ZP_05064470.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265439|gb|EDY89709.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 114/343 (33%), Gaps = 18/343 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+          
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345
            +        +    + YT+   D +R  ++     + + +D+
Sbjct: 326 IVGRLLNHTPLSITGQRYTRPSLDALRPSMEIACAELLNRIDN 368


>gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 376

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 106/360 (29%), Gaps = 37/360 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +   +G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           I S R    T              L   +  Y++         N+    +S  D +   +
Sbjct: 69  IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYA 126

Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           G+     +I        ++             + S+   +          AVR + +  N
Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKN 186

Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P       E+PK         T E+++   +   +    + A+ F  + GLR SD     
Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            +++  +    +                  + L   P   +    ++       +  +  
Sbjct: 247 WKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 371

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%)

Query: 15  RTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
             R+GK  Y          +G++IR  +    ++  + +     +   +   NS      
Sbjct: 15  VIRNGKTYYKANITVGWDSNGKQIRKSFG---SYKKSVVLDKMNTAKYQAKTNSLSNSDI 71

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +   L  ++  +     ++ N+   +E       +          +IT K ++      +
Sbjct: 72  SFGELFKDWIFNFKKIEVSPNTFYEYEASYRLRLMNYSIARKKANQITLKDLQQYFNELQ 131

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS 184
              T ++  +    +    K+A+ Q  +  + C  V  +   K E I  ++K++ +    
Sbjct: 132 KDFTANTIKKTYIQIHSCIKFAIIQGIMMKDFCPGVTLQKITKKENINVFSKQEQEMVLR 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
              +         F  Y+GLR  +        +++N+  I  Q                 
Sbjct: 192 TLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMVKITRQYRRNVDVDKVDDRKLTY 251

Query: 232 ---------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                              ++ L      +     +N  + +   +      +   K  +
Sbjct: 252 TFKELKTKNSAREIPLPDKVQELLKDIPRQGNLIFSNLGKPIEPKKPQRRIASICKKLNI 311

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340
              S H +R   AT   +       +    G   +      YT      +L  +   +++
Sbjct: 312 PHRSFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKL--EVLDKLN 369

Query: 341 SV 342
           ++
Sbjct: 370 NL 371


>gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
 gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-2]
          Length = 369

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKQTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|168214027|ref|ZP_02639652.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
 gi|170714519|gb|EDT26701.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens CPE str. F4969]
          Length = 368

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 110/347 (31%), Gaps = 36/347 (10%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G        G+     +RIR+      T   A       S+        P+ K   LK 
Sbjct: 9   KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127
            I ++  +    S+ +N+R ++ S  +  II   G++   ++ T  I++           
Sbjct: 69  FILDWFHNHKVLSIGINTRNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNP 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSSA + + ++    K+A + + +   P    +    +   I  W+K+ +  F +   
Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +           +G+R  + C      +      +   +              + L  
Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFRRGYLNITRQVISDKSTNTLVCTENLKT 246

Query: 248 TP--------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           T                        +   ++ + +  N    S+ F  K  K        
Sbjct: 247 TKSDRTISIPKILLKEFEKNLKDPNDFIVLSRENKMCNPRNISMDFTKKVNKYKDRLPQI 306

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           S HG+R   AT+    G     +    G   +     TYT   + ++
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353


>gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 304

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 88/299 (29%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
           L+  I  + +S       A N+ +++++                 +     +   +    
Sbjct: 3   LERHIEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLA 62

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SA    + L+S+R   ++ +R    A +P      PK      +  ++ ++    +
Sbjct: 63  TAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLT 122

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCS-------DSCRAGVQHLQNNIFSIKTQKTGTI 232
                    G       E L  +G+R S       ++       L       + +     
Sbjct: 123 AAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLS 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
                    ++ +      +  F        M    F+   K  A  AG++    S H +
Sbjct: 183 AAARDAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARLSPHSL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R   AT     GA    L    G   +   + YT            + R+  +V+   P
Sbjct: 243 RHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVL---------AERLQKLVEEHHP 292


>gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 88/270 (32%), Gaps = 30/270 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            + ++N+  +++    ++     +        +T H+ S +          SS  + ++ 
Sbjct: 6   RASSINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISV 65

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----------WSE 188
           +R  + +   +     NP  ++E PK+     +   K+ +                   +
Sbjct: 66  IRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWK 125

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +  L  E L  +G+R S+        L       I   K      V L    +  L M
Sbjct: 126 RVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQM 185

Query: 248 TPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294
                 +  +  +             ++   F+   KA A +AG+ K   S H +R   A
Sbjct: 186 YKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + GA    +    G   +   + YT 
Sbjct: 246 SHLLEGGADLRTIQILLGHTDISTTQIYTH 275


>gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 290

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 86/267 (32%), Gaps = 21/267 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
             LA N+  ++ +           G  D    T + +   +   +       +  + L++
Sbjct: 12  RGLAENTLAAYAADLADFAGFLAQGGIDLEAATEQTLFLYIVDLRRRGLTSRTLSRHLSA 71

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           +R LF   V Q  +A +P   +E PK         T+++M    +        G + R  
Sbjct: 72  LRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVLARPDLSDRLGFRDRTM 131

Query: 196 FEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            E L  SGLR S+ C                  K      V + D   KLL+        
Sbjct: 132 LELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKERIVPVHDTAAKLLSAYIRDWRP 191

Query: 255 FFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
            F   +                     K    +AG+ K  S H  R   AT   D GA  
Sbjct: 192 AFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRKDISPHTFRHSFATHLLDGGADL 251

Query: 305 HELMATYGWKTVDQAETYTKG-ADRIR 330
             +    G   +   E YT   ADR+R
Sbjct: 252 RTVQMLLGHADIAATEIYTHVQADRLR 278


>gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 378

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 110/378 (29%), Gaps = 52/378 (13%)

Query: 15  RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R     +    G     G+R +       T   A  +A T  T   E       K  T
Sbjct: 6   RKRGNAWSFTIDIGIDPTTGKRQQKSKSGFRTKKEAQNAAATMITEI-EKGIYFDDKQLT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +  +  K      L      S+E         I+        + I    I+S     
Sbjct: 65  VLDVWEK-LKPLRKAELK---ITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAEL 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K       +       +R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F 
Sbjct: 121 KGKGLSNGTISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFL 180

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------- 221
            +  E   +  + F   +Y+G+R  +      + +  +                      
Sbjct: 181 QYLKEKNIKYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAT 240

Query: 222 ----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                      S    +            F +           F  N     ++      
Sbjct: 241 KTKSSNRSISISSFVIEKLQSYYSYKKKEFFRWGIHLNEEAFIFTGNTIHSPLHIDAPHR 300

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +      KA V +   H +R   AT+   AG     +    G  ++    + Y+      
Sbjct: 301 FLNDHYKKADVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN- 359

Query: 330 RLGIKNSRRISSVVDSDD 347
            +  + +    S++ S++
Sbjct: 360 -MQQQAAENFESIIKSNE 376


>gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
 gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82]
          Length = 334

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LK  I++Y     +   L   +  ++++  +Q I   G+ +  K    +       R + 
Sbjct: 25  LKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK-EVLNAYLVYLHRMYK 83

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IRPW 174
             +  + + S++ LF +   +E + INP   V+   R+                      
Sbjct: 84  QKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYK 143

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
            +   +  +       +     E L  +GLR S+ C    +++           K G   
Sbjct: 144 ERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKER 203

Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVN 283
            +++ +         + K        +  FF+N     ++           A   +A +N
Sbjct: 204 YLQIGNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADIN 263

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H  R   AT   +       +    G  ++   + YT      
Sbjct: 264 ITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEK 309


>gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11]
 gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11]
          Length = 295

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L     +      L   S+ S            G      +TT+ +R           TP
Sbjct: 9   LRERMIEDMRIRGLGDKSQQSHIRAVKDFAAFLGRSP-DTVTTEELRVYQLHMTDAGVTP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEG 189
           S     +T++R  F     +E +        +   +  +     + E++ +        G
Sbjct: 68  SVYNARITALRFFFSMTCGREEMKRYM----QFRTQPRKLPAVLSAEEVSELLAVAPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + R A      +GLR S+ C      + ++     +   K      V L    + LL  
Sbjct: 124 LKYRAALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRD 183

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                               ++  Q +  F +    AG+NK  + H +R   AT   +AG
Sbjct: 184 YWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAG 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G   +     YTK A +
Sbjct: 244 TDVRVIQVLLGHAKLTITAQYTKVATK 270


>gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter
           tengcongensis MB4]
 gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC
 gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 353

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 100/305 (32%), Gaps = 45/305 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKIT------- 115
           L+  ++ Y  +      + N+  ++        R           D  + +I        
Sbjct: 46  LEEFLN-YFSTVKAR--SPNTIKAYAYDLILFFRFLKKRRGKVSDDIPFDEIDISDVDID 102

Query: 116 ----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164
                       ++      R +TP +  + + S+R  + +  R+ + ++ NP   +E P
Sbjct: 103 LIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESP 162

Query: 165 KRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           K         T E+ ++  +        +        L  GLR S+     +  ++ +  
Sbjct: 163 KLSVRHPIYLTLEESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKL 222

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK 274
           +    K     T+ L +  +K ++     +    + + K        ++++        K
Sbjct: 223 T-VIGKGNKQRTIYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVK 281

Query: 275 AKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RI 329
                A +     SAH +R  +AT+    G      L    G   V   + YT   D ++
Sbjct: 282 KHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQL 341

Query: 330 RLGIK 334
           R  + 
Sbjct: 342 REAVN 346


>gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
 gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489]
          Length = 296

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137
              + ++  +++    +     G          +    +R+ +    S++ +  S  + +
Sbjct: 14  KKYSTHTVTAYKKDISEFTEFCGVNYQLTSIDDVPYAFVRNWIVVLVSKEISNRSINRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQP 192
            S++  +K+  +   V +NP    +  K   +   P++ E+      +       EG + 
Sbjct: 74  ASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEEVEAALNEVDFEAGFEGERD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFMKLLAM 247
           RL    L  +G+R  +     ++++     +I     + ++    +   +       L  
Sbjct: 134 RLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNKERVVPLAPFVCPWVYSYLEN 193

Query: 248 TPIGKETFFINNDKQKMNATQFS-----IWFKAKATK--AGVNKSAHGVRKFSATISADA 300
                            +  +              +K  +    S H +R   AT   + 
Sbjct: 194 REALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSSKQKNSPHILRHTFATHLLNE 253

Query: 301 GATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338
           GA  + +    G  ++   + YT    A+  ++ +    R
Sbjct: 254 GADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHPR 293


>gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC
 gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 320

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 86/300 (28%), Gaps = 34/300 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFD----YRKITTKHIRSG 122
           ++  ++ +    A     + N+  ++     Q +     +G          +  + +R+ 
Sbjct: 16  VREAVASWLTLLARERRFSPNTVEAYARDLRQFLAHRARAGTQPDIPSLVALKPRDLRAF 75

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + +R+       S ++ L S+R   +   R+ +  ++   +V  PK +    RP      
Sbjct: 76  MAARRAEGIGGRSLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLPVAAA 135

Query: 180 QQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               S      + R           LA  +     +  +   R     +          K
Sbjct: 136 VALASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLDTLTIVGK 195

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281
                 V +       LA                F+      ++     +   +     G
Sbjct: 196 GQKTRMVPVIAPVQAALAEYLAACPYALAPDGPLFVGQKGGPLSPRVVQLAVASLRGALG 255

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL--GIKNSR 337
           +    + H +R   AT           +    G  ++   + YTK  D  RL    + + 
Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTK-VDSARLMSAFEAAH 314


>gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2]
 gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2]
          Length = 310

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 99/294 (33%), Gaps = 33/294 (11%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHI 119
            TL   I  +         L+ ++  ++           G    +         I T H+
Sbjct: 1   MTLSKPIVSFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHL 60

Query: 120 RS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R+    +  RK + ++  + L  +R  F++   +  +         +  ++    R  ++
Sbjct: 61  RAYLEHMTERKLSAATVRRRLACLRSFFRYLEDRGTMPNPFDGWRLKLPKRKRLPRTLSR 120

Query: 177 EDMQQFKSFWSEGSQPRLA----------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++  Q           R A             ++ +G+R  + C+     + ++  +I+ 
Sbjct: 121 DETTQLLKSARAPGAARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRI 180

Query: 227 QKTGTIITVELPDGF---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
              G+   +                 L   T  G    F+N +  K+    F    +  A
Sbjct: 181 HGKGSRDRMVYVTDNGLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFA 240

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +AGV +  + H +R  +AT+  ++G     +    G  ++   E YT  +D  
Sbjct: 241 GQAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 294


>gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 477

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 95/350 (27%), Gaps = 40/350 (11%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
              G+R R     ++         LT      E   +   +  T+   + E+        
Sbjct: 110 WVDGKRSRKTVYGKTE--KECREKLTKVQRAAELGVNVTAERRTVAVWLGEWLDIKEGDG 167

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
              ++  ++    +  I+   G     K+T   +R  V S K +     S     + +R 
Sbjct: 168 TRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVASAKKSGLSAGSVRHVHSLIRN 227

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A R + VA N   +V+ P      +R   + +  +       G +    F   L  
Sbjct: 228 ALAEAERLDLVARNVAKAVKAPPTPHREVRAL-RPEEARRLVEVLRGERLEAVFACGLML 286

Query: 203 GLRCSDSCRAGVQHL------------------------------QNNIFSIKTQKTGTI 232
           GLR  +        +                                 +       T   
Sbjct: 287 GLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSLMFVPAKTERSHRRLPIPPKLVTILR 346

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                       L          F ++    +     +  F     +AG+     H +R 
Sbjct: 347 RHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNRRFDVLRRQAGLPWLRLHDLRH 406

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339
             A++    G  A  +M   G  T+     TYT    +  R  +    RI
Sbjct: 407 AFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVGRLDRI 456


>gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 379

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 103/354 (29%), Gaps = 49/354 (13%)

Query: 15  RTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R ++G        +     +R  +     +        AL+     RE           +
Sbjct: 13  RRKNGGWMGQYVVYTAEGRKRKTVYGKTRAEVAKKLNKALS----DREDGLFFDAGNLKV 68

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127
              +  + + +  G++   +  +++      I    G+   + +T  H++     +    
Sbjct: 69  GEYMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQGLYRQKLDAG 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSS       +      A+R   V  N   +V+ PK  +E +   T E+ ++F    +
Sbjct: 129 LAPSSVRYIHAVLHRALTQALRWGLVPRNVSEAVDLPKLVSEEVDALTPEEARKFLDA-A 187

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------------------SIKTQ 227
            G +    +   + +G+R  +        +                              
Sbjct: 188 RGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNAPATLRVGRQLQRMRDGSGLKFVAP 247

Query: 228 KTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQF-SIW 272
           K G   T+ LP   ++ L                    +   F +     +  +      
Sbjct: 248 KGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGLVFASEVGTPLEPSNIDRRS 307

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           FK    KAG+     H +R   AT+    G     +    G   +     TY+ 
Sbjct: 308 FKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKFVQELLGHADIKLTLGTYSH 361


>gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
 gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411]
          Length = 276

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             EY  S +    + N+  ++ +   + ++ +  FD   +    ++     R  + S+  
Sbjct: 8   FEEYLNSKYS---SKNTIKAYLTDTQEFLKNTKGFDRDDVEVFLVKLF--DRGLSSSTIT 62

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + L S+ + F++   +  V INP   +++PK+K    +   + D         +  + R 
Sbjct: 63  RKLASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFL-EVDDVVALLEGIKDKRDRA 121

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            FE +  S LR S++    +  +      I+ ++ G  +           L +    K+ 
Sbjct: 122 LFELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPISQ-RAALFLKDYLKDR 180

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMA 309
                   +        + +    K  +     + S H +R   AT   ++G     L  
Sbjct: 181 KEGPLFLNRYGKRLSDRYLRRLIKKYALSSIFKDVSPHTLRHSKATHLLNSGMDIRLLQR 240

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
             G  ++   + YT           N + ++   DS  P
Sbjct: 241 LLGHSSIKATQIYTHL---------NLKELAQTYDSTHP 270


>gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA2]
 gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL044PA1]
 gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA3]
          Length = 315

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---H 128
           + ++         + N+   + +     +      GD    KI T  +R+ +   +    
Sbjct: 22  VEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLADTRLAGA 81

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
           +P++  +  ++ RV F+WA  +  +  +P  ++               +  +        
Sbjct: 82  SPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVA 141

Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
                   +G++     E L   GLR  + C   +  +       I T K     TV + 
Sbjct: 142 QARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMG 201

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK--AGVNKSAH 287
              +  +      +  +   +  Q         +++         A         +   H
Sbjct: 202 TPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312


>gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
 gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC
           23834]
          Length = 307

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 11/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  +  S    + + ++  ++      +          +         +  +   P S  
Sbjct: 9   IEAWLHSLQQQNHSPHTLAAYRRDLTWLADFQPQSKLARPLFTAALRQLGQQNQHPRSIA 68

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQ 191
           + L++ R   +W V+  Y+  +P   ++ PK      +    E + Q      E    S+
Sbjct: 69  RRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLLDQAPENPLDSR 128

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
               FE L  SGLR +++C   +  L   + +   T K      + L    ++ LA    
Sbjct: 129 DLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQRHLPLTAQSIRALAGYLK 188

Query: 251 GKETFFIN------NDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGAT 303
            +               +++ A Q     +  AT  G  + S H +R   A+        
Sbjct: 189 TRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHHGSRHLSPHMLRHSYASHLLQNARD 248

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G   +   + YTK
Sbjct: 249 IRAVQELLGHSQLATTQHYTK 269


>gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C]
          Length = 321

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 30/277 (10%)

Query: 78  YRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRK- 127
           +         +A+++ +++E    Q      +  G          +    +R+ +  R+ 
Sbjct: 28  WLDHLIQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRAYLAYRRT 87

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178
              +  S  + + S+R  F +  R++ V +     V  PK +    +P T        ++
Sbjct: 88  QNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIESALRIVKE 147

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
             Q ++     ++       L   G+R S++     +   +        T K G    + 
Sbjct: 148 ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLIP 207

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287
           L     K +           +N            +         +      G+ ++   H
Sbjct: 208 LIPIVHKAIENYLKCCPYPLVNTQPIFLGVRGKPLQPAIIQRAVQNLRAHLGLPETTTPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     G     +    G   +   + YT 
Sbjct: 268 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTH 304


>gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
 gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893]
          Length = 317

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 89/284 (31%), Gaps = 22/284 (7%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES 125
           TL   ++ + +        +  +  S+     +            +R +T+  +R  V  
Sbjct: 13  TLAEPVAAFLRYLASEKRHSPRTCDSYRDDLKRFAVWVEHQPSPAWRSVTSHDLRRYVAQ 72

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    S  + L+++R  +++ +R+     NP L +  PK      R    + +   
Sbjct: 73  LSREGLGGRSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHL 132

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
                +     +    FE +  SGLR S+     +Q +      ++   K      + + 
Sbjct: 133 LDAAPDDPLEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLLPVG 192

Query: 239 DGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              ++ LA     +           +++    +++               G ++    H 
Sbjct: 193 RRALEALAQWLEVRGAMAPDGENALYVSRRGDRLSTRSIQSRLSRWGMSKGADQRLHPHL 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 253 LRHSFASHMLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 295


>gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
 gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185]
          Length = 334

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 90/314 (28%), Gaps = 10/314 (3%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G+ +   R    +  R+    +   I         +  ++       +   TL  
Sbjct: 4   RKMHDGRWLLDIRPCGRKGKRIRRIFDKKSIATATERYIIANAEKREFIQGYRDRRTLSD 63

Query: 74  LISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L+  +           N+ +       +++       +  K+     RS   +    PSS
Sbjct: 64  LLELWWVYHGQHRRKANTDKQQLGKIINELGADMFAVELDKLKIIAWRSQKIAEGLKPSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A +++  +  +F  A+++  +          P    +          +            
Sbjct: 124 ANRYMNRLSGMFT-ALKKIGLWDAEHPVRGIPVLYVKQREMAFLSKNEVTLLLDGLNGDQ 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R      L +G R S++ R   + + +N  +    K G   TV +       +     G+
Sbjct: 183 RRVALLCLCTGARWSEASRLHGEQIVHNRITFLETKNGRKRTVPVSQEICDAVKTKETGR 242

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                          +F    K         ++AH +R   A+     G     L    G
Sbjct: 243 LFDVK--------YREFCRALKKIKPDLPRGQAAHVLRHTFASHFVMNGGNILALQKILG 294

Query: 313 WKTVDQAETYTKGA 326
             T+ Q   Y   A
Sbjct: 295 HATIQQTMAYAHFA 308


>gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 293

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 92/287 (32%), Gaps = 25/287 (8%)

Query: 76  SEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---K 127
            ++     +  + +  +  S+            + D    +  I    IR  +ES     
Sbjct: 4   EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAIDADIIRDWMESMMDKG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L+++R  +++ + + YV  NP   +  PKR     +   + ++ +      
Sbjct: 64  CSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAEIDRLLDDVP 123

Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241
            G   R             +G+R ++        +           K      +   D  
Sbjct: 124 AGDSYRELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGKGSKQRLIPFADEL 183

Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291
            + L      ++         FF++   +++         +A      +   +S H +R 
Sbjct: 184 EEGLKTYITRRDAEVTRKSKAFFVDRHGERVKRGAVQNSVRASLAKVTSMKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             AT   +  A    +    G +++   E YT    +++R     + 
Sbjct: 244 SFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAH 290


>gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486]
 gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 10/261 (3%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++ E+         + ++  +++S     +   GD   +++T + + +    R  +   
Sbjct: 21  EILQEFIMLLESTGASKDTVKAYQSAISDFLDFIGDKPLKEVTLRDVLAWRNERLKSGFP 80

Query: 133 AIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--KEDMQQFKSFWSE 188
             + L  +  +    +                R     +     T   ++        + 
Sbjct: 81  RKKTLDKSRWQATLHYYTLFLKRFFEWLGLQLRVPSVKKPSSRITVLTDEEVGKLFQAAR 140

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLA 246
               +L    LL +GLR  +     V  +  +  +I+  +   G    V   +   KL+ 
Sbjct: 141 NPLDKLILRLLLDTGLRSKEVLNIKVGDIDFDGRTIRVVEGKYGKERYVTASNETFKLIE 200

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303
                      +     +         K  A KAG+       H +R   AT +   G +
Sbjct: 201 AWVKLNNLGRDDRLVD-LTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGIS 259

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G   +   + Y  
Sbjct: 260 LPSLQRLLGHTDIRTTQVYLH 280


>gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii
           ATCC 12478]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 36/293 (12%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG 122
              TL   +  Y         +A N+  S+     +  +   D    D   +    +   
Sbjct: 2   TTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHLEDRGITDLAAVGEDDVSDF 61

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + + +              SA + L ++R L ++A  +    ++   +V  P       +
Sbjct: 62  LVALRRGDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPK 121

Query: 173 PWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             T + +                   + R   E L  +G R S++    V  +  +  S+
Sbjct: 122 SLTVDQVLALLEGAGGDNPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTHARSV 181

Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272
               K G    V +    +  L    +                F+N    +++       
Sbjct: 182 LLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQV 241

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  A  AG+    S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 242 LQDAAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70]
 gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---K 127
           L  EY +     + +  + + ++   +Q        G     ++T   +R  +      K
Sbjct: 10  LFIEYLQ--VEKNYSQYTIVCYQRDVEQFFEFMNEQGIHHLHEVTYNDVRLYLTKLYEQK 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183
            +  S  + ++S+R  +K+ +R++ V  NP      PK++ +      +++         
Sbjct: 68  QSSRSISRKISSLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYVND 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
              + G + +   E L  +G+R S+ C   +  +  ++ +I    K      V       
Sbjct: 128 VNTAIGQRNQAILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQRYVPFGRFAK 187

Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
           + L                      F+N     +              KA +  N S H 
Sbjct: 188 EALERYIHHGRRELLQKAKSAHAYLFVNARGNPLTPRGVRYILDEIVKKAALTQNISPHV 247

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           +R   AT   + GA    +    G   +   + YT    DR+R
Sbjct: 248 LRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLR 290


>gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
 gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098]
          Length = 327

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 102/316 (32%), Gaps = 39/316 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-- 109
           G   +++ +       TTL+  I  +         L+  ++I++ +   Q+         
Sbjct: 2   GRHIEKDTMEEELDPRTTLE--IESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGA 59

Query: 110 ---DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                 +++ KHI++ +          S+  + L + R  F++  R      N    V  
Sbjct: 60  SLARPAEVSKKHIQAWLARLYALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRN 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-----------------EGSQPRLAFEFLLYSGLRC 206
           PK++    R    +                             ++     E L  SGLR 
Sbjct: 120 PKQEQRHPRVLNVDQAFAVLDTPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRI 179

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK--------ETFFI 257
           S++    V  L+ +   ++    G       L D  +  L      +        +  F+
Sbjct: 180 SEALGLDVTDLRLDESVVRVFGKGARERMSPLSDTSVTALRAWLEQRGTLAPEGEKALFV 239

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                +++  +     +     AGV   S H +R   AT   DAGA    +    G + +
Sbjct: 240 GARGGRLDRREAMRRIERLCRNAGVEPVSPHALRHSFATHLLDAGADLRSVQELLGHQRL 299

Query: 317 DQAETYTKGADRIRLG 332
              + YT+     RL 
Sbjct: 300 TTTQRYTR-VSLERLM 314


>gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217]
 gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217]
          Length = 296

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 18/263 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  ++  +         +  ++     +I     D    K+TT  ++         H+ S
Sbjct: 12  LYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYF-DCCPDKLTTADLKRYFADLIASHSWS 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       ++  ++  + Q +  ++       P +        T  ++    S   +  +
Sbjct: 71  TVKLDRNGLQFFYRHVLNQAWQWLSIVK----PPQVNHLPDILTPAEVSMVISLTHK-LR 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            ++ F  L   GLR  ++    +  +  Q     I+  K G    + LP   ++ L    
Sbjct: 126 YQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYYW 185

Query: 250 IGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                       +                 K   ++  ++KS   H +R   AT   + G
Sbjct: 186 QTHRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLLEQG 245

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G  +++    YT+
Sbjct: 246 LDLRSVQQLLGHNSLNTTARYTR 268


>gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865]
          Length = 305

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIR 120
           + ++         ++ ++  ++      ++  + +              D  ++T+  +R
Sbjct: 4   VEDFLAYLQVERQVSAHTLDAYRRDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQLR 63

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     R  +P S  + L++ R  + W ++   +A +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L       +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLESGLVMVLGKGEKQR 183

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L             +         ++     I  K  A + G+  +   
Sbjct: 184 LVPVGPHAITALREWLRDSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
 gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus
           m1550]
          Length = 369

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KGYLNHWLE-IKSMSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S+   L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 ISSNSILLMHRILKSALNLAVKQNIMSRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund]
 gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund]
          Length = 397

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 110/390 (28%), Gaps = 52/390 (13%)

Query: 1   MTPSLRLPPFVTKE----RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M+        + K     + +  +           +++    +  T     +  +T    
Sbjct: 1   MSKKANGEGSIQKYYQNGKDKGWRASITVGYDDKGKLKRKQFYGKTKSE-VLKKMTEYQH 59

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKI 114
           K+     P     TL+     +       +L  +S   ++  + + I     G+    ++
Sbjct: 60  KKNVGILPSDDKITLQQWFKTWLYEFRVNNLKPSSFERYDGIYRKYILNSPIGEIKLSEL 119

Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             K I++   +      + S        +    + A++Q Y+  N C  V  PK   +  
Sbjct: 120 RAKDIQTYYNNLYDNGISSSVINTINGFLYTCLESALKQNYIYQNYCKLVTLPKIVKDDK 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                   Q       +G +  +AF   L +GLR  +        +  +  ++   +   
Sbjct: 180 FTVFTLQDQNIFLNNIQGHKYEMAFILALGTGLRLGELLGLKWSDIDFDNNTLSVSRAIK 239

Query: 232 I-------------------------ITVELPDGFMKLLAMTPIGK-------------- 252
                                      TV +P   M+ L                     
Sbjct: 240 RTTIINKQGDRKSQIIEQLPKTKTSIRTVPIPTNIMEKLKEYKQKHSVIKKENEDLYNNT 299

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
           +  F +     ++  +    FK+   KAG+ +   H +R   AT   + G     +    
Sbjct: 300 DYIFCDKLGNPLDPKRIPRNFKSVLKKAGLKDIKFHSLRHTYATRLFEVGVPIKTVQTLM 359

Query: 312 GWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339
           G   +      YT    +      +    +
Sbjct: 360 GHSDITTTMNIYTHVMPEEKNKAAEKINVL 389


>gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
 gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus
           AH187]
 gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus
           BDRD-ST26]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT  H++  +    +    P++    +++
Sbjct: 38  RAEGFRKRTIDDYSKLFRYFMRELNIEKVEIITVAHVQMYINKLLNRELAPTTVNIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK    Q Y+  NP +   + +     I       +++           G +    
Sbjct: 98  LKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCT 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +  V  +  + F+I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEVNDIDFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                    T AG+ K    S H +R   AT     
Sbjct: 218 SREYFGGITNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
 gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 37/303 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + ++S Y         L+ N+  S+     + +      G     ++    + + + + +
Sbjct: 6   EAVLSSYLNHLAVERGLSANTVASYRRDLRRYLDHLKARGLRTLAEVREDDVAAFLTALR 65

Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      SSA +  +++R L ++A+R+     +P  ++  P++     +  + E++
Sbjct: 66  EGDADHPALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEV 125

Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++  +           + R   E L  +G R S++    V  +     +   +    +  
Sbjct: 126 ERLIAACGPDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQVRLRG 185

Query: 235 VELPDGFMKL------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                  + L                  LA    G    F+N    ++         +A 
Sbjct: 186 KGGRTRIVPLGRYARQALDAYLVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEVLQAA 245

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334
           A +AG+   S H +R   AT   D GA    +    G  +V   + YT    DR+R    
Sbjct: 246 AERAGLSGVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYA 305

Query: 335 NSR 337
            + 
Sbjct: 306 AAH 308


>gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 390

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 104/345 (30%), Gaps = 18/345 (5%)

Query: 14  ERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---K 67
                G   ++ R   +G  RRI L    E     A   A              R     
Sbjct: 43  RVRPSGNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKA 102

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T+   +  Y            ++ +++++   I    GD     I    I    +   
Sbjct: 103 TPTMTDFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCA 162

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185
             +     + +  +  L K+A   +            P+ K +   R  T  + ++  + 
Sbjct: 163 GESEVKFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVERYLTPAEYRRIGAA 222

Query: 186 WSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             E    R         LL++G R  +      + ++     +   KTG  +        
Sbjct: 223 LREAEADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKVIWLNSQAQ 282

Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
             + ++      +  F     K+ +N  Q+   F+ +   A  +   H +R   A+ +  
Sbjct: 283 DVLAVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC--ALPDVRIHDLRHSFASTAIM 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                  +    G K V+    Y   +D   +  + + RIS  + 
Sbjct: 341 ENVPLSTIGKLLGHKLVETTAKYAHLSDD--VIGEAAERISGSLA 383


>gi|49486813|ref|YP_044034.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49245256|emb|CAG43729.1| integrase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|319894719|gb|ADV76530.1| integrase [Staphylococcus phage TEM126]
          Length = 345

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+   ++  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +     +H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|319743915|gb|EFV96301.1| integrase [Streptococcus agalactiae ATCC 13813]
          Length = 362

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 33/351 (9%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            +   + ++G   Y FR       G++  +     ++   A  + +          N   
Sbjct: 2   RIESYKKKNGTTAYRFRVYIGVIDGKKKYIKRSGFTSKKLAKQALINLQQEIE---NPKD 58

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K     K L   +  +            +  +  + I+   G +  + +T   I+   + 
Sbjct: 59  KSTLLFKDLTKIWLDNYEKTVQGSTYLKTKRNIENHILPSLGSYQIKDLTPLIIQKYADE 118

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180
                  + + +  +R +   AV+ +Y+  NP   V  PK +    +     +       
Sbjct: 119 WSTKLKYSSKIVGIVRNILNHAVKFQYITSNPSAPVSAPKIQRTINKKKDYYNKDELKEF 178

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKT 226
               + ++       F  L ++GLR  +      +  +N                    T
Sbjct: 179 VQLVYNTDDINIIATFRLLAFTGLRKGEMLALTWKDYRNGTLDVNKAITRDIAGEHIGPT 238

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAG-- 281
           +   +   + L    M +L              +    + ++ TQ   W       +   
Sbjct: 239 KNKSSDRLISLDPETMNVLDNLHKTYPKTKYILESASGRWISPTQPRRWLVQILRDSISK 298

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                 HG R   A++  ++G T  ++    G + +     TY    +  +
Sbjct: 299 LEPIRIHGFRHTHASLLFESGLTLKQVQHRLGHEDLKTTMNTYVHITETAK 349


>gi|294795094|ref|ZP_06760229.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
 gi|294454456|gb|EFG22830.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Veillonella sp. 3_1_44]
          Length = 403

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 109/381 (28%), Gaps = 60/381 (15%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK    F      ++       ++ +  Y          ++  +    K T LK L + +
Sbjct: 21  GKWRGQFSITKDNKLIRRAFSGNSKLEVYKLGKQWIEATQQNTSIFSSKNTKLKDLCNYW 80

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128
            +     S+   +   ++S     I+   G+     IT + +++ + +  +         
Sbjct: 81  LQDVKKVSVKPKTFQKYDSTLRLYILPLLGEIKITSITPQQVQTVLNNWSNGTLKGKKGH 140

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
             + S+       +  LF++AV    +  NP    + P+  T  I   + +++ Q     
Sbjct: 141 IISSSTIRCTRRYLSELFEYAVNIGLLLKNPIKLTKPPRLITTEIHTLSLDEIHQLTSIM 200

Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223
                      +        +A +  L +G+R  +        +                
Sbjct: 201 KQQVSNNISSPYRINYYASYIAMKIALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTG 260

Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269
                   T+   +   + +       L      +  +      +  ++           
Sbjct: 261 TKGQIFQDTKTKTSRRCIPISQELQSELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGK 320

Query: 270 --------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
                   S +F     +  +   + H +R   AT+          +    G  T+    
Sbjct: 321 ILSTSNFKSRYFIPILKQLNLEHITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTL 380

Query: 320 ETYTKGA-DRIRLGIKNSRRI 339
           +TY+    D  +  +K    +
Sbjct: 381 DTYSHLVPDIQKEAVKALDNL 401


>gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2]
 gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2]
          Length = 348

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 42/303 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           L  ++  Y +       LA  +   +     ++   +     +   +   HIR       
Sbjct: 16  LPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMH 75

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
               SA      L+  R  F+WA ++E V  NP   V  PK      +    +D      
Sbjct: 76  GAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
               ++     ++     E L   GLR ++     ++  Q +    +             
Sbjct: 136 FHNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQ 195

Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271
                   V +    ++ L                     +   F+    ++++A     
Sbjct: 196 GKGSKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEAALFVGRRGERLSAQSVWS 255

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K +  +AG+      H +R   A+    +      +    G  ++   + YT+  D  
Sbjct: 256 RLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR-LDFQ 314

Query: 330 RLG 332
            L 
Sbjct: 315 HLA 317


>gi|257899112|ref|ZP_05678765.1| phage integrase [Enterococcus faecium Com15]
 gi|257837024|gb|EEV62098.1| phage integrase [Enterococcus faecium Com15]
          Length = 379

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 115/376 (30%), Gaps = 44/376 (11%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +   R     Y   ++K  G+  ++      T   A  +A        + +    +K 
Sbjct: 1   MARLVKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLK-GDRKN 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
             L     ++ +    G+++  +   +E     I +         +     +  +     
Sbjct: 60  LLLSDYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAK 119

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            H  S+ I+F   +R   K AV +  +  +P        + +   +       +  +   
Sbjct: 120 DHVKSTVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLM 179

Query: 184 SFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
               E    + +   L+     +G+R ++      + +      I   KT          
Sbjct: 180 KLVEENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGK 239

Query: 233 -------ITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIW 272
                    + +    + LL                       F N     +++   S +
Sbjct: 240 TKNETSNRKISIDKHTIDLLKKFKINQKELFDNFEVKNPHNFVFFNLKNGLVSSNAVSKY 299

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
            + K  + G+ K  + HG+R   A+I    G     +    G  +++    TY       
Sbjct: 300 LRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--R 357

Query: 330 RLGIKNSRRISSVVDS 345
            L  ++  +I++V DS
Sbjct: 358 ELEDQDKEKINAVFDS 373


>gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700]
          Length = 295

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT 129
            + +Y         ++ ++  +++    +I+     +G   ++++T   +R  +      
Sbjct: 4   ALQKYWTYLKIERQVSPHTLSNYQRQLVRIVEILQHAGIQQWQQVTPSVVRFVIAQSHKD 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+   + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLHEKSLALRLSALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E L  SGLR S+     +  +   +  ++          V L     
Sbjct: 124 SKEPIDIRDRAIIELLYSSGLRLSELQGLNLNSINIRVREVRVIGKGNKERVVPLGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293
             +              E  F++    +M+     +  +      +   + + H +R   
Sbjct: 184 HAIQQWLKVRLLFNPKDEALFVSQLGNRMSHRAIQMRLETWGIRQRLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016]
 gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 355

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 46/293 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--------------------------DFDYRKITTKH 118
              + N+   ++      +R                                   +    
Sbjct: 55  KGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFEKIKIKDIDIDIIKQITLSDL-FAF 113

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           I      R +   +  + + S++  FK+   + + ++ NP L +E P+         + +
Sbjct: 114 ISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSLK 173

Query: 178 DMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +            +      F L  G+R S+ C   + +++ +  +    K     T+
Sbjct: 174 ESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLT-VIGKGNKERTI 232

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            L    ++ L      ++ +          FI+ +  ++N     I  K    KA ++  
Sbjct: 233 YLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSE 292

Query: 284 -KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGI 333
             + H +R  +AT+    G      L    G + V   + YT   D R+R  I
Sbjct: 293 KYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAI 345


>gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +++ TT   L     +     ++   ++              G       T   +R+   
Sbjct: 22  KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               T    S+    + S+R+ F     +E +        +            + E++  
Sbjct: 79  HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134

Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             +     G   R A      +GLR S+ C   V  +     +  +   K G      L 
Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194

Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            G + LL             F        ++  Q +  F +    AG+NK  + H +R  
Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   +AG     +    G   +     YT  A
Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
 gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196]
          Length = 341

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+         +   R    I+ 
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329


>gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri
           A1501]
 gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC
 gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501]
 gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK 127
           +  Y +       L+ +S  ++    D+++         G  D +    +H+ +    + 
Sbjct: 5   LDAYFEYLRSARQLSGHSLDAYRRDLDKVLTYCERERIAGWRDLQGRHLRHLIAEQHRQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+S+R L+++  ++     +P   +  PK +    R    +   Q      
Sbjct: 65  QSSRSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQLLDGGV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L      ++   K   +  + +     
Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNKVRELPVGSKAR 184

Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L      +          FI    +++ A    +  +     + G +   H +R   A
Sbjct: 185 EALQAWLPLRTLAGPADGAVFIGQQGRRLGARAVQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L         R     D+D
Sbjct: 245 SHLLESSQDLRSVQELLGHADIGTTQIYTH-LDFQHLAKVYDHAHPRAKRKQDTD 298


>gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
 gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4]
          Length = 310

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           ++  I+ Y          A N+  S+     +        G     ++T  H+ S   + 
Sbjct: 8   VRGAIATYLDHLVVERGTARNTLDSYSRDLRRYAAHLEAAGVVRLAEVTPAHVTSFGAAL 67

Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +           SSA + L ++R L K+A        +P   V  P       +     D
Sbjct: 68  REGDEEHQPLAASSAARALVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVAD 127

Query: 179 MQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           + +             + R   E L  +G R S++    V  + +   ++    K G   
Sbjct: 128 VLKLLDTPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKGGKQR 187

Query: 234 TVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGV 282
            V +    ++ L    +                F+N    +++        K  A +AG+
Sbjct: 188 LVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAERAGI 247

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 248 TAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290


>gi|307943606|ref|ZP_07658950.1| putative phage integrase [Roseibium sp. TrichSKD4]
 gi|307773236|gb|EFO32453.1| putative phage integrase [Roseibium sp. TrichSKD4]
          Length = 414

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 87/331 (26%), Gaps = 15/331 (4%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLP---------YPHESTFIPAYMSALTGSTPKRE 59
           P     R   G   Y+     G R R                    A   A        +
Sbjct: 40  PGFGVYRNATGPARYFVHFRVGTRQRKKMIGLVTEMSLSDARAEAGALKVAARQGRDVIQ 99

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 ++  TL      +  +      +  +   +   +   + K        I+   I
Sbjct: 100 ERKEELQRGITLSEAYLAFLDALERKGGSPRTVKGYSQNWRTRLSKHSSTPLGDISKADI 159

Query: 120 RSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           R+  +      P++A Q L   R ++  A+R          +     R+    +    E 
Sbjct: 160 RAWHKKWGECGPTAANQSLRLFRAIYNHAIRTSDGLPPNPSNAVDQFRERGERKWLEWEA 219

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                      E    R  + FLLYSGLR SD+       +        + K G +   +
Sbjct: 220 LPAWMADVERLENPIRRALWPFLLYSGLRRSDAASIRWDEVGETSIHRPSPKGGRLRAFD 279

Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                 +  +        T           A       +    K   + S H +R+  AT
Sbjct: 280 LPLSSKLSEILEDAREAHTLLFPMSPYVFPANSAYGHVETLKEKTIPHVSPHMLRRTFAT 339

Query: 296 ISADAGATAHELMATYGW--KTVDQAETYTK 324
              +AG   +             D    Y +
Sbjct: 340 ACVEAGLDPYTTKRLLNHTVARGDVTALYVR 370


>gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 356

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 42  EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 100

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 101 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 160

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 161 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 220

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 221 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 280

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 281 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 340

Query: 329 IR 330
            +
Sbjct: 341 QK 342


>gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +++ TT   L     +     ++   ++              G       T   +R+   
Sbjct: 22  KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78

Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               T    S+    + S+R+ F     +E +        +            + E++  
Sbjct: 79  HMTDTDVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134

Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             +     G   R A      +GLR S+ C   V  +     +  +   K G      L 
Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194

Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            G + LL             F        ++  Q +  F +    AG+NK  + H +R  
Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   +AG     +    G   +     YT  A
Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 401

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 93/325 (28%), Gaps = 19/325 (5%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLIS 76
            Y  + G  RR+ L    + T   A   A                    +   T+  L +
Sbjct: 44  QYRSQTGRTRRMALGQVGKITLDEARTLAQRVFSDVAKGLDPSANRKQGRTAPTVAELCA 103

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR-KHTPSSAI 134
            Y            S++      ++ I  + G      ++   +     +  + TP  A 
Sbjct: 104 RYLAEHAQAKKKPASQVRDRRLIERFIIPQLGGEKVNTLSRADVAKLHNAIGRETPIQAN 163

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSF 185
           + L  +  +   A+R            +  +R  E  R             + +   ++ 
Sbjct: 164 RTLAVVSKMMTLAIRWGLRDEAKGNPAQFIERFREAKRERYLSADELAQLGQALAAAENE 223

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                    A  FLL +G R  ++     + +      I    + T        G +  +
Sbjct: 224 GWGFRPAIDAIRFLLLTGARVGEALSLRWEWIDRERACIFLPDSKTGRKALPIGGAVLAM 283

Query: 246 AMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
                 +         Q +       +  ++    +AG+     H +R   A++ A +G 
Sbjct: 284 LDGLAKQAGNPHVFPGQSLGRPLVDINTTWRKVRARAGLEGVRLHDLRHSYASVGAASGL 343

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
           +   + A  G         Y+  A+
Sbjct: 344 SLTLIGAILGHSEPSTTARYSHLAN 368


>gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
 gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella
           multiformis DSM 16608]
          Length = 330

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 83/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKH 128
            L++ +  +      +  +   + S  + ++ K  +     I T  IR       E R  
Sbjct: 54  ELLNAFIAAKKIEGCSDKTLHYYRSSIEALLAKL-NKKIDVIVTNDIRNYLSDYQEERLS 112

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +           F W   ++Y+  +P   + + + ++      + E+M+  +    E
Sbjct: 113 SRVTIDNLRRIFSSFFAWLEDEDYIGKSPVRRIHKVRTESLVKEVLSDENMEVLRDTCHE 172

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +   + +                  V         L  
Sbjct: 173 -IRDLAMIDLLASTGMRVGELAKMNREDIDFQERQCVVFGKGNKEREVYFNARTKIHLKR 231

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++          ++   ++  +   +  +    KAG+     H  R+  AT++ D 
Sbjct: 232 YLESRKDNNPALFVSLSSPHNRLTISGVEVRLRQLGRKAGISKVHPHKFRRTLATMAIDK 291

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 292 GMPIEQVQKLLGHVKIDTTLHYA 314


>gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 293

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 24/286 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           ++ E+ K   +  LA+++  +++       +   D          +T+  +R      + 
Sbjct: 8   VLGEFLKEIRYNGLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYMQS 67

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++  + + ++    +WA  + YV   P    +  + +    +   + +  +   
Sbjct: 68  VQDLRPATINRRMAALEKYIRWAHEKGYVDRLPTF-PKIVREQKTPPKALGRVEQNRLLR 126

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPD 239
                 + R      L    GLR S+     +  L     +       K      V +P 
Sbjct: 127 EAERRGKVRNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPVPP 186

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
              K +    I +   + ++D          + A       K     AG++   H +R  
Sbjct: 187 EARKAIREWMIERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIHPHVLRHT 246

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +AT     GA    +    G   ++    YTK  DR  +  +   +
Sbjct: 247 AATNMIRTGADLVTVAQILGHANLNTTAIYTK-PDRKTMM-EALEK 290


>gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21]
 gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21]
          Length = 299

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 23/276 (8%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIR--KSGDFD-YRKITTKHIRSGVESRKH 128
            ++  +      G   + ++  ++    ++++      +FD   +++   +R+ + SR+ 
Sbjct: 5   EVLGAWHDHLAHGLRRSPHTVRAYHKAAERLLSRLHLHEFDQIAELSAGKLRTHLASRRS 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +SA + L++++    +A  Q          +  P+ K    RP T +D       
Sbjct: 65  DGLSNASAARELSALKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAET 124

Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                     G++ R     L  +G+R S++       L        T K      V L 
Sbjct: 125 IEELAVDGWVGARDRAVLLLLYGAGMRISEALSLKGGDLPLGETLTVTGKGNKQRVVPLL 184

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGV 289
                 +A             D           +               G+    + H +
Sbjct: 185 PLVRDSVATYVKQCPWPLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHAL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT    AGA    L    G  ++   + YTK 
Sbjct: 245 RHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 280


>gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
 gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1]
          Length = 254

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 17/226 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
            P +  + L+S+R  ++  V     + +P   VE P+         T+  ++   +    
Sbjct: 25  RPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGALTERQVEALLAAPDT 84

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
               G + R   E L  +GLR S+     V  +      ++    G              
Sbjct: 85  GDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVRVIGKGDRERLVPLGEEAVD 144

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291
            V      ++ L +     E  F+    + +    F    K  A  AG++   S H +R 
Sbjct: 145 WVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVKRYAAAAGIDPAISPHTLRH 204

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             AT   + GA    +    G   +   + YT  A +    +  + 
Sbjct: 205 SFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAH 250


>gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
 gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 38/278 (13%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  ++      +            T      +   + +++R    SS  + L++MR LF
Sbjct: 17  NTLDAYRRDLSDLSEFLAGKANSFTTADTQALRDYLADLDTRGFKSSSVARRLSAMRHLF 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190
           ++ + +   + +P   +  PKR     +  +  D+ +  +   E                
Sbjct: 77  RFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTRAKELTETADASPAQRLRAL 136

Query: 191 QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248
           +     E L  +GLR S+           +    +   K      V L     + +A   
Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGNKERLVPLNQASRQAMADYL 196

Query: 249 --------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
                           GK  F    +   +    F+   K  A  +G+     S H +R 
Sbjct: 197 AALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKELAVASGLPARLVSPHVLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT   +  
Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294


>gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
 gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1]
          Length = 301

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 80/272 (29%), Gaps = 22/272 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  Y     +   L   +  ++    +Q        + +      +        + P + 
Sbjct: 6   VENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLKNKKDISVYIQQLHTTYKPRTV 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG--- 189
            + + +++  + +  +Q+++  NP   ++   ++     +  T  ++             
Sbjct: 66  KRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHELNHLYQSLYAYSKQ 125

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG-- 240
                 ++     E L+ +G+R S+       ++     +I           + + +   
Sbjct: 126 TSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKGSKERIIYIDNQNL 185

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                 + +L          FFIN     ++                ++   + H  R  
Sbjct: 186 IQSLLSYQRLFQDEIEKSPYFFINRLGHHLSEQSIRFMIVKYCHLFHIDSHITPHMFRHT 245

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT+  +       +    G  ++   + YT 
Sbjct: 246 FATMMLEEDVDIRYIQEILGHSSITTTQIYTH 277


>gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104]
 gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104]
          Length = 313

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 36/282 (12%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT-PSS 132
           Y         +A N+  S+     +  +   D    D  K+    +   + + +   P +
Sbjct: 13  YLDHLTIERGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSDFLVALRRGDPDT 72

Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                    A + L ++R L ++   +    ++   +V  P       +  T + +    
Sbjct: 73  GAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALL 132

Query: 184 SFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234
                          + R   E L  +G R S++    V  +     S+    K G    
Sbjct: 133 EAAGGESPADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRL 192

Query: 235 VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           V +    +  L    +                F+N    +++        +  A +AG+ 
Sbjct: 193 VPIGRPAVAALDAYLVRGRSELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGIT 252

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 253 SGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294


>gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 391

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 98/373 (26%), Gaps = 43/373 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M         + ++R   G+                  Y    T     +  L       
Sbjct: 1   MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKKNGDPIHRYVLARTQKELIVK-LHDCIEMY 58

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
              +       TL   +  +       ++  ++  S+++    QI    GD     +TT+
Sbjct: 59  RDADLTEDSNMTLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQ 118

Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++    + K                          +      AVR   +  NP +    
Sbjct: 119 ELQKFYNTVKKKGRVKPDKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTI 178

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           PK      +    E +++F     +  +    F   L +GLR  + C    +        
Sbjct: 179 PKNNYPPKQILNDEQLERFMKRIRQDKRWYDFFYTELTTGLRRGEICGLKWEDFDAENGK 238

Query: 224 IKTQKTGTIIT-----------------VELPDGFMKLLAMTPIG----KETFFINNDKQ 262
           +K +++                      + LP    +LL               I   + 
Sbjct: 239 LKVRRSVAKRKGGGLNIGETKTETGTRTIVLPPSTAELLRKRKETAVSEWIFPNIYEPEN 298

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            M+        K    +A +     H +R   AT +   G  A  L    G        +
Sbjct: 299 PMHPDYAYHRLKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLD 358

Query: 321 TYTKG-ADRIRLG 332
           TYT    D  R  
Sbjct: 359 TYTHVTTDMQRNA 371


>gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus
           ATCC 19977]
 gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus]
          Length = 304

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 98/307 (31%), Gaps = 38/307 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG--- 122
           L  ++ E+ +        +V+++ ++      +         +     ++   +RS    
Sbjct: 5   LAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGA 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +    S+  +  +++++   WA R+  +  +P + +++PK +        ++     
Sbjct: 65  QARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA 124

Query: 183 KSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
                 G         + RL  E L  +G+R S+ C   +  +      ++   K     
Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184

Query: 234 TVELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAG-- 281
           TV   D     L+                         ++++  Q         +     
Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +   HG+R  +AT   + GA    +    G  T+   + YT              R+ +
Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVT---------VARLRA 295

Query: 342 VVDSDDP 348
           V D   P
Sbjct: 296 VHDQAHP 302


>gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
 gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304]
          Length = 322

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 50/301 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKH 128
              ++        L+ ++R ++    D     +   G     K+ T  +R  +  ESR+ 
Sbjct: 9   AYEDFLAENQ--GLSQHTRTAYRGDVDQCLHFLSLRGVDSIEKVNTDLLRMWMAYESRRL 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
             SS  + + ++R  F +         +P   +  P+         TK+           
Sbjct: 67  AKSSLARKIVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKKQASALMDKAEE 126

Query: 185 -----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232
                        +   +     E L  +G+R ++        +  +      T K    
Sbjct: 127 VYQTDRKEQSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSRTVKVTGKGNKQ 186

Query: 233 ITVELPDGFMKLLAMT--------------------------PIGKETFFINNDKQKMNA 266
             V         L                                 E  F+ +   ++N 
Sbjct: 187 RVVPFGAPASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAVFVGSRGGRINQ 246

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            Q        A +AGV   S H +R  +AT   D GA   E+    G  ++   + YT  
Sbjct: 247 RQVRQVVHRLAAEAGVPDISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHV 306

Query: 326 A 326
           +
Sbjct: 307 S 307


>gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469]
 gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469]
          Length = 270

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 21/267 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            LI +  +       +  +  ++       +R        ++T +       S   + S+
Sbjct: 15  ELIGKLIEEIKLRKYSYRTGKAYIYVVKNYLR-------SELTPREFLLKYYS-DKSKST 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q   +++  ++  + + +    P    +      +     +++++++         + 
Sbjct: 67  IRQAYFALKFFYRNVLHERFNEEIPLAKKK-----EKLPVVLSRDEVKRMIYGTH-NIKH 120

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           RL   FL Y+G+R  +      + ++       IK  K      V L       L +   
Sbjct: 121 RLVLMFLYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGR 180

Query: 251 GKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
             + +   + + +K +     +  K  A +A +NK  + H +R   AT   + GA    +
Sbjct: 181 KSKGYVFMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYI 240

Query: 308 MATYGWKTVDQAETYTKGADR--IRLG 332
               G K +   + YT  A++   +L 
Sbjct: 241 QQLLGHKHLKTTQIYTHVANKDIKKLA 267


>gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
 gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2]
 gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 310

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 86/279 (30%), Gaps = 30/279 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ ++       + +  +  + ++  +     + +    +I    IR+ +  R       
Sbjct: 7   LLKKWLDEYLLANKSNETIYTLKNSLNLFFEYT-NLALEEIEASDIRTFIAYRAQNGVGV 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187
           S+  + ++++R  F +  +++ +  NP   ++  K      +      + +         
Sbjct: 66  STLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKSSKVLPKFHEVTVINEVLDSNKNLE 125

Query: 188 --------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234
                      +     E     GLR  +     +++++     ++      +     + 
Sbjct: 126 FERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIENVEVKRKQVRVTGKGNKTRIIPLG 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAG--VNK 284
            +  + +++ L +                         +  Q +   K     AG  +  
Sbjct: 186 SKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGAQLSRVQINKRIKNAFKLAGYPIQS 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + H +R   AT   +      E+    G   ++  + YT
Sbjct: 246 NPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYT 284


>gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
 gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343]
          Length = 294

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 88/261 (33%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133
           Y ++      + ++  ++ +YF +  +     + R I  + I + +    ++R  +    
Sbjct: 16  YAETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQ 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + S++  F     +       C  V+R KR+       +KE+++          +  
Sbjct: 76  NLRINSIKFYF----EKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLF 131

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT--- 248
             F  L  +GLR S+        +  +     ++  K        L    ++ L      
Sbjct: 132 CMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL 191

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              +E  F     +    +  S   K  A +AG+ K    H +R   AT   + G     
Sbjct: 192 YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKI 251

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +   E Y   AD
Sbjct: 252 VKELLGHNQLKTTEMYVHIAD 272


>gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009]
 gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas
           palustris CGA009]
          Length = 338

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 96/319 (30%), Gaps = 42/319 (13%)

Query: 53  GSTPKREYINSPRKKPTTLK-------WLISEYRKSAHW-GSLAVNSRISFESYFDQIIR 104
            +  +   +  P  +  TL+        L   +          + N+  ++      +  
Sbjct: 5   RTISRAAPLREPEAQAATLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSH 64

Query: 105 KSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                        T  +RS +    +     SS  + L+++R LF++ + +   A +P  
Sbjct: 65  FLSRRRLSIGSADTAALRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAA 124

Query: 160 SVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCS 207
            +  PKR     +  +           +Q       G++ R A    L      +GLR S
Sbjct: 125 ILAGPKRGRSLPKVLSIADVDQLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVS 184

Query: 208 DSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK-------------E 253
           +     +   + +   I  +        V L  G  + +A                    
Sbjct: 185 ELVSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKW 244

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310
            F    +   +    F+   K  A +AG+     S H +R   A+     GA    +   
Sbjct: 245 LFPSFGESGYLTRQHFARDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTL 304

Query: 311 YGWKTVDQAETYTKGADRI 329
            G   +   + YT   +  
Sbjct: 305 LGHSDISTTQIYTHVVEER 323


>gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D]
 gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D]
          Length = 328

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 86/298 (28%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y  +  +   L+ ++  S+      +     + + + D  ++ + HIR  +      
Sbjct: 19  IAAYLDALRFERQLSPHTLESYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  FKW   R   V  NP   V  PK      +  + E        
Sbjct: 79  GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
                 E  + R   E     GLR S+     ++H++   +   +               
Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198

Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276
                          +         LA      E         +       Q  +  K  
Sbjct: 199 SKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 315


>gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999]
          Length = 383

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 103/355 (29%), Gaps = 26/355 (7%)

Query: 6   RLPPF--VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM--------SALTGST 55
            LP    +    T  G   Y FR    +   L   +  +   A          +A   ++
Sbjct: 29  NLPKGFRIEIRNTSKGIGTYRFRTKD-KDHHLGRTNTISLEQALQQTTQLIPSAAPPHNS 87

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
                + +P     TL     +Y        L   +  + ES +  +I    G      I
Sbjct: 88  LLPPIVQTPPTCALTLNEFWEQYYWPHIKTRL--RTFRNIESMWRLRIKPIFGKQRLDDI 145

Query: 115 TTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               +     S      S       +  +  +F  A++ E +  NPC  VE  K   +  
Sbjct: 146 KVLELERFQTSLIEKRLSGSHVTGHIKLISRMFTLAIQWELITKNPCDKVEYMKFDNQKE 205

Query: 172 RPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK- 228
           R  + E+ ++F             L   FLL +G+R   +       +  +   I     
Sbjct: 206 RFLSTEEQKRFIEVLMLHPQRPVNLLMIFLLVTGVRSGVAKALKWSWINMDKQIITVPPS 265

Query: 229 ---TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                   T+ L    M +L        T+   N    +    F   FK     A ++  
Sbjct: 266 IAKNKKQNTIFLNTTAMDILKRLAGTDPTYVFINPMTHLPYNDFKKSFKTALKAAQISDS 325

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
              H +R    +    +  +   +              Y K + D +R   + + 
Sbjct: 326 VRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVSQDTLRQACQIAA 380


>gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
 gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421]
          Length = 307

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 90/285 (31%), Gaps = 34/285 (11%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT-- 129
             +Y          +  + IS+ +          D    + ++    IR  V   +    
Sbjct: 7   FEKYLDYIAGIKHFSKQTVISYRNDLLLFDSWLTDSELKFTELGVSDIRIFVADLREKKF 66

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+S  + L ++R L+++AVR      NP L+V+  K   +  R    E  ++F +    
Sbjct: 67  APASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFLFPEQAKEFYNLPVN 126

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                 ++    F  L  +G R S+     ++++ +    +I   K      V   D   
Sbjct: 127 KGLLWEARDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVLGKGSKERKVFFADFAK 186

Query: 243 KLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           + L +                        ++  FIN     ++           A  +  
Sbjct: 187 EYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSVQGIQYIIDRYAAVSPD 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               S H  R   A+     GA    +    G + +   + YT  
Sbjct: 247 LKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHV 291


>gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 107/342 (31%), Gaps = 15/342 (4%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--- 70
           +R+ +G     +R G+GR+    +                    +         P T   
Sbjct: 5   KRSNNGTYYVAYRDGNGRQHTRSFGKGRDGKREAEKFDEQVKAHKVIEVPLEPAPPTSGK 64

Query: 71  ---LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
              L  L   Y  +      ++             II         +I    I S V   
Sbjct: 65  KIFLDELSQMYINAKKAEGKSIRRLKELAVILERHIIPAFAQRPVEQIRFDEIISLVGKV 124

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFK 183
             K +P +  ++L  ++ +F++ V  E +  NP    ++PK R  +     T  +  +  
Sbjct: 125 YAKRSPVTRGRYLAYLKTVFQFGVDNELIEKNPLRRWKKPKERPRDTRLTVTDLNKIKAA 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +         +A+   + +G     + +      +N   ++   KT T   + + D F+ 
Sbjct: 185 AEPHLAWAIEVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTKTRRIIPISDEFLA 244

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
            L       ++ FI   + +    Q S   +    +AG+      + VR   AT     G
Sbjct: 245 RLREVKEAAQSPFIVEYQGRP-VKQISRAMRTACRRAGITYPVVLYDVRHLFATTLLREG 303

Query: 302 ATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISS 341
                +    G  ++      Y     D  R  I    R+  
Sbjct: 304 GDLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKLPRLEQ 345


>gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366]
 gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366]
          Length = 294

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 97/287 (33%), Gaps = 28/287 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES 125
            T++  ++ Y +       + ++  S+++   Q         +    ++   HIR+ + +
Sbjct: 1   MTVEHFLT-YLQHE--KRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVA 57

Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177
                 + +S  + L+++R  +K+ +R+  ++ NP   V+ PK          +      
Sbjct: 58  LMEDEISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLL 117

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            D ++F        + +   E L  +G+R ++        +     +I+     +     
Sbjct: 118 LDSEEFFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIV 177

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284
                          +K L          F+ +              +   T       K
Sbjct: 178 PIGKTLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKK 237

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           S H +R   AT   + GA  + +    G  ++   + YT    +R++
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLK 284


>gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 290

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 75/268 (27%), Gaps = 18/268 (6%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130
           +  +        + + ++  ++++   Q I        D+R    +  R+ + S+ +   
Sbjct: 6   LQRFLTYLKNERNFSDHTVTAYKNDVLQFIAFLEQEQLDFRTFEYRDARNYLVSQYNKGL 65

Query: 131 --SSAIQFLTSMRVL--FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             ++  + ++++R    F +   +    +      ++                       
Sbjct: 66  ERTTVSRRISALRSFYGFLYDGDESNPFVQLVHPKQKKYLPEFFYEKEMTLLFNSIDMSK 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245
               + +   E L  +G+R S+             +      K      +       + L
Sbjct: 126 PFAVRDKFILEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKERIIPYGAYAHRSL 185

Query: 246 AMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATI 296
                 + +  I +D          + A   +        +  A  +   H +R   AT 
Sbjct: 186 LDYMDFRNSMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSADGHIHPHKLRHTFATH 245

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + GA    +    G   +     YT 
Sbjct: 246 LLNNGADLRTVQELLGHVNLSTTSKYTH 273


>gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 329

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 99/295 (33%), Gaps = 48/295 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115
           Y ++    + + N+  +++       R    +                        + I 
Sbjct: 23  YLETI--KNKSTNTIAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKSIK 80

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
            + + + +    + R ++  +  + + +++  FK+   + + +  NP + +E PK     
Sbjct: 81  LRDLYAFMSFIEKYRNNSAYARARKVATLKSFFKFLQGKAKIIVDNPTIELESPKINKRQ 140

Query: 171 IRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               T +                ++        L  G+R S+ C   ++ ++++I +I  
Sbjct: 141 PVYLTLDQSIHLLNSLDQSNKNYARDYCILILFLNCGMRLSELCGISIEKIRDDILTIIG 200

Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276
           +      TV L    +K +                K+  F+++  + +N     I  K  
Sbjct: 201 KGN-KERTVYLNAACLKAIENYMRIRDDSKALPENKKFLFLSSHNKPINQRTVEIMIKKH 259

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              AG+     + H +R  +AT+    G      L    G + +   + YT   D
Sbjct: 260 IKNAGLTDGKYTPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDD 314


>gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
 gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM
           17565]
          Length = 343

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 41/302 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVE----SRKHTPSS 132
            +L+ N+++S+   F  ++            +     ITT  I   ++     RK + SS
Sbjct: 28  RNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFLDYLEIERKVSVSS 87

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183
               L +++   K+   +    I+ C  V     K    R  T  D  + +         
Sbjct: 88  RNNRLAAIKAFAKFLAWKSPEHIDWCHHVTLIPSKKTEKRMITYMDKSEIEALADAPLKT 147

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVEL 237
             +    S+  +   F+  +G R S+     V+ +               K        L
Sbjct: 148 CKYQGIRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPMVTLHGKGRKERICPL 207

Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286
            + F  LL      K        N   Q M+        K  +    +N         S 
Sbjct: 208 WEDFWDLLKQFIDNKLPDDYLFLNRYNQPMSRFCIYEMIKKYSQDVILNHPSLANKRPSP 267

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           H +R  +AT   ++GA    +    G  ++D    Y + +   +L  +  ++    V SD
Sbjct: 268 HVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKL--EVLKKCEQSV-SD 324

Query: 347 DP 348
            P
Sbjct: 325 TP 326


>gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti
           MAFF303099]
 gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC
 gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC
           [Mesorhizobium loti MAFF303099]
          Length = 312

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 87/291 (29%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR- 120
           L+     + K  A    L+  +  ++E    Q +           G  D   +    +R 
Sbjct: 12  LQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRG 71

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +   +      +  + L  +R L ++  R+  V      ++  P++     +P T  D
Sbjct: 72  FLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPRQPKSLPKPLTASD 131

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
            +Q               ++       L  SGLR S++       L +   +    T K 
Sbjct: 132 AKQVVSVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASETDTVLRVTGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V +    ++ +A                F       +N            +   +
Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPYHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNL 251

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTARL 301


>gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 103/360 (28%), Gaps = 37/360 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +   +G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           I S R    T              L   +  Y++               +S  D +   +
Sbjct: 69  IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTDILKEYA 126

Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           G+     +I        ++             + S+   +          AVR + +  N
Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186

Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P       E+PK         T E+++   +   +    + A+ F  + GLR SD     
Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            + +  +    +                  + L   P   +    ++       +  +  
Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 341

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +       H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+  +      +        I+ 
Sbjct: 298 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329


>gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A]
 gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis]
 gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis]
 gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 108/361 (29%), Gaps = 34/361 (9%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
              ++ P  +  ++   G    Y   +R G      L                  +    
Sbjct: 7   PTKVKEPVRLRTKKLADGSQSLYLDIYRFGKRTYEYLKLYLIPETDNNARRQNQATMNAA 66

Query: 59  EYINSPRKKPTT-------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
             I S R    T             L   ++ Y+++          +I        +   
Sbjct: 67  NAIKSKRIIELTNGEAGIETKERVYLLDWMNTYKENQAKRGKKDGYQIDI--TIRILKDY 124

Query: 106 SGDFDY-RKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           +G+     +I     ++ ++           + +  +   +   +      AVR E +  
Sbjct: 125 AGERMLMDQIDKTFCQNYLDYLQSEYRSRGKRVSNYTLHTYYRVLNGALNAAVRAEIIKS 184

Query: 156 NPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           NP   +   E+ +         T E+++   +   +    + A+ F  + GLR SD  + 
Sbjct: 185 NPFTKISKSEKIRLPESKRSYMTIEEVRALIATPMKNESVKGAYLFSCFCGLRISDIIKL 244

Query: 213 GVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             + +  +    + +                + L   P   +    ++     +    +I
Sbjct: 245 QWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGDKTPDDHVFDLPSPAMVNI 304

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  AG+NK  + H  R   AT+    GA  +      G   V   + Y K  ++ 
Sbjct: 305 LIKPWAKAAGINKRFTFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINQK 364

Query: 330 R 330
           +
Sbjct: 365 K 365


>gi|320139614|gb|EFW31483.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 345

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +  +++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNSAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2]
 gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2]
          Length = 377

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 116/370 (31%), Gaps = 37/370 (10%)

Query: 10  FVTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            + +   ++G+  Y F+          + IR       T   A ++             S
Sbjct: 9   RIKEYVKKNGEKAYMFKLYLGIDQDTKKPIRTTRRGFRTQREARLAIADLELNGLSKPES 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +   T + + + + +       A     +   + + I+   G+   + I     ++ +
Sbjct: 69  EPQMIHTYEQIYNLWYEEYKTTVKASTLLKTERVFKNHILPAFGNKPIQDIKPMDAQNQM 128

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                    A   +    ++F +A+R + + +NP   +++P RK             + +
Sbjct: 129 NIWHKKLVRASMVMNYAGLIFDYAIRMQLINMNPTKVIKKPVRKESVREDKDMNFYDKDE 188

Query: 184 SFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------- 221
                         +  + F  L ++G+R  +S       +                   
Sbjct: 189 LKKFMAALENNNNFRAFVYFRLLAFTGMRKGESLALKWSDIDLEKQTLYINKAVSRSATG 248

Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKAT 278
            +    +   +I  + + D  + +L           +   +     +  +   W+     
Sbjct: 249 LYIQTPKTPSSIRRISIDDKTVSILQEYKKESPDGLVFQSEDGGILSPAKPRKWYLTAMK 308

Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334
               +    S HG R   A++  +AGA+  ++ +  G   +      YT  +   +   +
Sbjct: 309 NLPDDFKQISIHGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHVSKTAK--EQ 366

Query: 335 NSRRISSVVD 344
            + R ++ VD
Sbjct: 367 LANRFNNYVD 376


>gi|255292018|dbj|BAH90501.1| tyrosine recombinase [uncultured bacterium]
 gi|255292879|dbj|BAH89979.1| tyrosine recombinase [uncultured bacterium]
 gi|255292943|dbj|BAH90041.1| tyrosine recombinase [uncultured bacterium]
 gi|255293213|dbj|BAH90303.1| tyrosine recombinase [uncultured bacterium]
          Length = 399

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 104/365 (28%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59
           L P    + T  G+      Y    G  R+  L    E T   A   A       R    
Sbjct: 27  LVPGFLCKITPSGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 86

Query: 60  --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+K L +++ +         +++  ++S  D+ I+   G    + +  
Sbjct: 87  PSADKAVARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 147 PDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLIS 206

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         E  +          LA         R  +        +      +    
Sbjct: 207 DEDMGKLFRHLERLEAEGLENYVIPLAIRLQFEFAGRRGEIVTLQWDWVDFENRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           + T    +        L                 N+  Q +   ++   +      AG  
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQDDCPYVLPSPNHPGQHLTTGEYYNGWSRALKAAGAA 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   HG+R  SAT  A++G      MA    KTV     Y    D         R+ + +
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380

Query: 343 VDSDD 347
           V +  
Sbjct: 381 VANRR 385


>gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica]
          Length = 303

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRS-GVESRKHT 129
           I  + +       L+  + I++  +   +           +  +    +R   + SR+  
Sbjct: 12  IEAFLRYLRVERRLSPVTIINYRRHLSALAEMVLAIDVRQWEDLDPAKVRMLVIRSRRAG 71

Query: 130 PSSAIQFLTSMRV--LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             SA   L    +     W V Q  +A+NP  +V  P  K    +    +++ Q  +   
Sbjct: 72  LQSANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNIDVDEVNQLLNINF 131

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 + R   E +  +GLR S+      +HL   +     + K      V L    ++
Sbjct: 132 NEPLSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWVSGKGSKERKVPLGQTAVE 191

Query: 244 LLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L      +E F       FI+N  ++++       F     + G+  +   H +R   A
Sbjct: 192 WLNRWLEMRELFKPGDNAVFISNRGRRISTRNVQQRFAQWGIRQGINSHIHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T   ++      +    G  ++   + YT 
Sbjct: 252 THILESSGDLRAVQELLGHASLSTTQVYTH 281


>gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424]
 gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 94/264 (35%), Gaps = 13/264 (4%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R    T   +I  +         +  + IS++ +  Q +   G    R +T   +   V 
Sbjct: 6   RATSDT--EIILLWLN-----GKSKTTIISYQCHIKQFLEFVG-KPLRDVTLDDLSLWVN 57

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               T  P +    + +++ LF +A R  Y+ +N    ++ PK K        ++   + 
Sbjct: 58  RLNLTYQPVTVANKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKR 117

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               +   +  +    +   GLR S+ C      L+N   +    K      V +P    
Sbjct: 118 LINATPNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKAT-VFGKGAKTRVVIIPPNLW 176

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
             L   P   E  F++    ++  T      K    K+GV    S+H +R   A+ + +A
Sbjct: 177 DRLMQLPRDGEAVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEA 236

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L  + G   ++  E Y  
Sbjct: 237 GCNLRLLQQSLGHSKLETTEKYLH 260


>gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
 gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469]
          Length = 305

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 28/278 (10%)

Query: 78  YRKSAHWGS-LAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y +   +   L  N+  ++     Q       D   ++    +I    +  K    +  +
Sbjct: 10  YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIEVYITELHKKYKQK--TVKR 67

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-------------KTEGIRPWTKEDMQQF 182
            + S++  + +   +E ++ NP   ++   +               + +        +  
Sbjct: 68  KIASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLNYMYDCLKKNV 127

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
            + +    +     E L  +G R  +        +  N   I+    G     V++ +  
Sbjct: 128 LTGYKYQLRDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIMGKGGKERYVQISNSS 187

Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           +  +      +          FFINN   +          K  A +AG+  N + H  R 
Sbjct: 188 VLAVLRKYYKQNENEIKKSGCFFINNRGNRYTEQSIRSMLKKYAKQAGIARNITPHMFRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT   + G     +    G  ++   + Y   A + 
Sbjct: 248 SFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKK 285


>gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 45/302 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115
           Y  +     L+ N ++S     +   R     +                        ++T
Sbjct: 11  YLATE--RGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVAPGEVT 68

Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            + I    +  +    + +S    + ++++ F+W   ++ +  +    +  P+ +     
Sbjct: 69  HQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTERYLPE 128

Query: 173 PWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--- 225
              +  + +           G + R   E L  SGLR S+   A +++L  +   I+   
Sbjct: 129 TMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARIIRVTG 188

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKA 277
              +     +  +  D     L             ++    +              KA A
Sbjct: 189 KGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIVKACA 248

Query: 278 TKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             AG++ +   H +R   AT     GA    +    G   +   + YT   D+ RL   +
Sbjct: 249 KNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTH-VDQQRLKAVH 307

Query: 336 SR 337
            R
Sbjct: 308 HR 309


>gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII]
 gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII]
          Length = 295

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 87/271 (32%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
            ++ Y         ++ ++  +++   D  I+     D    T       + I +  + +
Sbjct: 4   ALNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVMRFILAESKKQ 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V+Q  + +NP   +  PK+     +    E +QQ  +  
Sbjct: 64  GLKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLAND 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E +  SGLR S+     +  +   +  ++          V       
Sbjct: 124 SKEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYAS 183

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              E  F++    +++        +    +  +  + + H +R   
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQDLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456]
 gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456]
          Length = 406

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 17/265 (6%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----SSAIQFL-TSMR 141
           +  +  ++ +     +   GD    +I +  + + +  R         SS    L    R
Sbjct: 35  SPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRRPRSSGNNLLDARSR 94

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPRLAFE 197
                            L ++      +  R         +  +     +      L   
Sbjct: 95  QATMHYYTLFLRGFLAWLGLDVKVPVVKKPRGARVEALSREEVEKLLAAARDPLDLLIVA 154

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETF 255
            L  +GLR  ++    +  +      I+ +  K G    V         + +        
Sbjct: 155 LLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDM 214

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYG 312
             ++    ++ +      K  A +AG++      H +R   AT +   G     +    G
Sbjct: 215 KPDDKLLGISYSGLYKRLKTLAKRAGLDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLG 274

Query: 313 WKTVDQAETYTKGADR--IRLGIKN 335
            K +   + Y    +    RL  + 
Sbjct: 275 HKDIKVTQVYLHLVNEDIRRLYQQA 299


>gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC
 gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58]
 gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385]
 gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76]
          Length = 301

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 26/289 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127
           L   +  Y ++      + ++  ++     +++    +         T       +    
Sbjct: 6   LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + L+S R    W V++  +  +P   ++ PK+     +   +E + +   
Sbjct: 66  GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 125

Query: 185 FWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
              +G      +    FE +  SGLR S+        +  +  +     K      V L 
Sbjct: 126 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 185

Query: 239 DGFMKLLAMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKA-----GVNKSAHGVR 290
              ++ L      ++T          +           K  A  A     G + S H +R
Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 245

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A     A      +    G  ++   + YTK      L   +  R+
Sbjct: 246 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK------LDFDHIARL 288


>gi|288941419|ref|YP_003443659.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288896791|gb|ADC62627.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 398

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 98/347 (28%), Gaps = 21/347 (6%)

Query: 8   PPFVTKERTRHGKI--IYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           PP         G+   +  +R    +R + +      T   A + A             P
Sbjct: 28  PPGFGLRIYPSGRKAFVLSYRSQGRKRLMTIGTYGVLTLDQARIQARAELAKVETQGADP 87

Query: 65  RKKPT------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                      T + L   Y +       +             ++   G      +T   
Sbjct: 88  LAVRQRQAQGETFRDLCQTYMERHGQAKKSGT--DDQRRIDRHLLPLWGSLKVPAVTRAD 145

Query: 119 IRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWT 175
           + +         P  A + L  +  +F  A R  +V            R    +  R  T
Sbjct: 146 VAALHSKIGKAHPYEANRVLALLSKMFDLARRWGFVPEGHPNPARDIDRFKEAKRDRWVT 205

Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            E++ +     +E      R      L +G R S+  RA    +      ++   T    
Sbjct: 206 PEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDVDWTRAELRIPDTKAGR 265

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV-NKSAHGV 289
              +P     L  +  I +     +    K++       +  +      AGV +   H +
Sbjct: 266 VHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLVNINKPWDRVRRAAGVEDVRVHDL 325

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           R+   +  A AG + H +              Y + G D +R  ++ 
Sbjct: 326 RRTVGSWLAQAGNSLHLIGRVLNHSNQSTTAIYARFGEDSVRAALEQ 372


>gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39]
 gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39]
          Length = 294

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 27/280 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES 125
            T+   ++ Y K       + ++  S+E+   Q      D             +R  +  
Sbjct: 1   MTIAEFLT-YLKHE--KRYSPHTIQSYETDLLQFEAYLSDVYELALPDAGRAQVRDYMVW 57

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    S  + L+++R  +K  V    +A +P   V  PK             + Q 
Sbjct: 58  LMERQIAERSVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQL 117

Query: 183 KSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
                         + +L  E L  +G+R S+     +Q +           K      +
Sbjct: 118 LDSTEIFNDSFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERII 177

Query: 236 EL---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284
            +              K L       E  F+ N    +          +  T       K
Sbjct: 178 PIGKTLTSLLKVYIDTKTLQDFNNKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQDKK 237

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH 277


>gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 432

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/376 (13%), Positives = 110/376 (29%), Gaps = 37/376 (9%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
              ++ P  +  +    G    Y   +R G      L                  +    
Sbjct: 61  PKKVKEPVRLRMKDLSDGSKSLYLDIYRNGKRTYEYLKMYLIPETDENARRRNKATMNAA 120

Query: 59  EYINSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             I S R    T              L   +  Y+++              +     I  
Sbjct: 121 NAIKSKRIIEMTNGEAGIENEKEKVFLLDWMQTYKENQEKRGKKD--ENQIKVAIRIIED 178

Query: 105 KSGDF-DYRKITTKHIRSGVES--RKHTPS-------SAIQFLTSMRVLFKWAVRQEYVA 154
            +G      +I     +  ++    ++ P        +   +   +      AVR E + 
Sbjct: 179 YAGKKVTLDQIDKAFCQGYIDYLMMEYRPRGKRVSNFTLKNYYRVLNSALNAAVRAELMR 238

Query: 155 INPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            NP   +++    +         T E+++   +   +  + + A+ F  + GLR SD  R
Sbjct: 239 SNPFDKIDKSDKIRLPESKRSYMTIEEVKALIATPMKYEEIKCAYLFSCFCGLRISDVKR 298

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFS 270
              + +  +    +   +       +      + L   P   +    +      +  + +
Sbjct: 299 LQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLVFDLPSGNEIN 358

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  AG+NK  S H  R   AT+    GA  +      G   V   + Y K  ++
Sbjct: 359 RLLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINK 418

Query: 329 IRLGIKNSRRISSVVD 344
            +   +    ++ + D
Sbjct: 419 KK--DEAVNLVNGLFD 432


>gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 348

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 96/322 (29%), Gaps = 45/322 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK 127
           L  ++  Y +       LA  +   +     ++  + ++ D +   +   HIR       
Sbjct: 16  LPEVVHSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQPAHIRRFAAQMH 75

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
               SA      L+  R  F+WA ++E V  NP   V  PK      +    +D      
Sbjct: 76  SAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            Q   +     ++     E L   GLR ++     ++  Q ++   +             
Sbjct: 136 FQIPDADPWIEARDVAMTELLYSCGLRVAELVGLDLRPDQQSLQQGRGWIDLEAGDAHVQ 195

Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271
                   V +    ++ L                     +   FI    +++       
Sbjct: 196 GKGSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQDETALFIGRRGERLGGHSVWS 255

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K +  +AG+      H +R   A+    +      +    G  ++   + YT+  D  
Sbjct: 256 RLKQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTR-LDFQ 314

Query: 330 RLGI---KNSRRISSVVDSDDP 348
            L     K   R      ++ P
Sbjct: 315 HLAQAYEKAHPRAQRSSAAEKP 336


>gi|320105374|ref|YP_004180964.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319923895|gb|ADV80970.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 394

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 114/365 (31%), Gaps = 39/365 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +T+E+ ++G  ++ +R            R+  +    +     A    + G       I 
Sbjct: 13  LTREKRQNGSDVWVYRWRENGSSGQRINRKRIVGTVADLRSKAAAQKLVEGLRLDINAIV 72

Query: 63  SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
                  T+  LI+ Y ++  A   +    +R  +  + ++I +   G +  + + T  I
Sbjct: 73  QTAPHSYTVAELITHYLETELAEKANKTALTRKVYRYHLEKIILPVWGKYRLQDVRTVAI 132

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +ESR   PSS  +       LF+  +R E+V  NP   V +  ++       T+ ++
Sbjct: 133 ERWLESRPGAPSSKAKTRNIFSTLFRHGMRYEWVFSNPIELVRQGAKRLVEPDILTEAEI 192

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QK 228
           +            R        +GLR  +      Q +     +I+             K
Sbjct: 193 RTLIE--GLDEPARTMVLVAAVTGLRRGELFGLRWQDVDFQGLTIRIACSLVDQVEGAPK 250

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKAKA 277
           T T  T       +            F   +D    +                      A
Sbjct: 251 TVTSRTSIPLSPELARALGEWKRTTHFTGESDWVFSSPASLGKQPYWPGMILRRHIAPAA 310

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGI 333
            + G+NK    H  R+ +AT+   AGA+           +       Y +   +  R   
Sbjct: 311 QRLGINKKIGWHTFRRTTATLLFSAGASVKTTQELMRHASPSITLGLYAQAVTEDKRAAH 370

Query: 334 KNSRR 338
               +
Sbjct: 371 NALSK 375


>gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1]
          Length = 307

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 88/285 (30%), Gaps = 31/285 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------G 122
           + ++ +Y          A N+  S+    D+ +    D     +                
Sbjct: 5   ERVVEDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLADAGIDDLGRVRETDVAGFVTALR 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              R    SSA + L ++R L ++AV +  V  +    V  P   +      T + + Q 
Sbjct: 65  TGERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQVDQL 124

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237
            +        G + R   E L  +G R S+   A +  L     +I    K      V +
Sbjct: 125 LAGCVADGPTGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQRIVPV 184

Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
               +             LA    G     +N    +M+        +A A  +G+    
Sbjct: 185 GRPALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASGLGPAV 244

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               S H +R   AT     GA    +    G  +V   + YT  
Sbjct: 245 VAAVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHV 289


>gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 304

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 88/292 (30%), Gaps = 30/292 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123
             +         +  +  ++      + R +G+                ++ +       
Sbjct: 15  EAFCARLSAEGRSPATISAYRRDLALVARVAGELTPGIVCRAVTAGLLDQVFSAGAVIES 74

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + +S  +   ++R  F WA     V  NP  S+   +   +     T  + ++  
Sbjct: 75  VRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLL 134

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R   E LL +G+R  +     +  +  +   ++ +  G +  V   
Sbjct: 135 KELKGRTDFFALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFI 194

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287
              ++ L    + +       + +         ++   Q +        KAG+ K  + H
Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G+R   AT    A      +    G + V   + YT   D      +   R+
Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304


>gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 298

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 89/289 (30%), Gaps = 23/289 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRK 127
                ++        + +  + I++     +  +      ++++T  H R        R 
Sbjct: 7   DRFADDFFTFLEVERNASPRTLINYRHALAEFRQVPNLPAWKELTADHFRRYLFECSKRG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               +      ++R  +K+   +  +  NP   V+ PK + +     T + + +  S   
Sbjct: 67  IARPTIRLHFAALRTFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLSAPL 126

Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
                        ++     E    SGLR ++     V ++     S++   K      V
Sbjct: 127 RIEKSAKAPVWMPARDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKERVV 186

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKA--TKAGVNKSAHGV 289
            +    +  +                 K+          +  +     T   +  S H +
Sbjct: 187 PVGAPALTAIQKYRQEANVHAGPLFLSKVRRRLTAANVWLVIRRYLPHTSIPLKVSPHKL 246

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
           R   AT   DAGA    + +  G  ++   + YT    +R++     + 
Sbjct: 247 RHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAH 295


>gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016]
 gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016]
          Length = 296

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 19/286 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
              L  ++            +  ++     +I     D     +T + +R        + 
Sbjct: 9   FDDLYQQHLTQLKLQGKRAKTISAYSLAVRRITEYF-DRCPDTLTIEDLRRYFSQLIGQV 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+       ++  +K  + +++      + + +P +        + E + Q  +   E
Sbjct: 68  SWSTIKLDRCGLQFFYKHTLNKQW----EWIGIIKPPKVKRLPNIISPEQVAQIINTTRE 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + R+ F  L   GLR +++    +  +   N    I+  K G    V LP   +  L 
Sbjct: 124 -PRYRVLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGKDRLVPLPHRTLHALR 182

Query: 247 MTPIGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                                   N        K    + G++K  + H +R   AT   
Sbjct: 183 RYWCTHRHPKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGIHKRITPHSLRHCFATHLL 242

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVV 343
           + G     L    G  +++    YT+          +   +++  +
Sbjct: 243 EQGLDLRSLQILLGHASLNTTARYTQLTQLKLHDANQALNQLADRL 288


>gi|21283668|ref|NP_646756.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912911|ref|ZP_07130349.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205109|dbj|BAB95804.1| integrase [Staphylococcus aureus subsp. aureus MW2]
 gi|300885689|gb|EFK80896.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 345

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 98/328 (29%), Gaps = 22/328 (6%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-PRKKPTTLKWLISE 77
           GK   Y  K  G+R R              +   G     E  +        TL+     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK-----REANYAGLDKLNELRSGFNIDNYITLEEYFEN 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSAI 134
           + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   +  
Sbjct: 63  WIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIR 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   ++R     A+   ++  NP   V      P +  +       E          + +
Sbjct: 123 KTNGAIRSALDDALYDGFIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRT 182

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFMK 243
           +  LA   ++ +G R S +     +H+     +I               I        M 
Sbjct: 183 RSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMD 242

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           +++   I  + +        +N    +   K+      +   ++H +R    +     G 
Sbjct: 243 VISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGV 302

Query: 303 TAHELMATYGWKTVD-QAETYTKGADRI 329
           + H +    G K +      Y+   +  
Sbjct: 303 SIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 390

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 98/277 (35%), Gaps = 23/277 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
            +   G+ +  +  +++     +IR +G     ++T    ++      E ++ + ++   
Sbjct: 123 NALQIGNYSYRTLKNYKQALIALIRYAGSIPLDELTRAQYQAYLLFLTEKKRLSSATINV 182

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + +    +K+   +          ++ P++ T+    ++ ++++      +   + R  
Sbjct: 183 HINA----YKFYQEKVLQRDKLYFDIDYPRQPTKLPTVYSVDEVRAIIKATT-SLKYRTL 237

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG----FMKLLAMTP 249
           F  +  +GLR S++    +  L  +    +++  K      V L +         L    
Sbjct: 238 FRLIYSTGLRLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKLDLDINTYLNQYR 297

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307
             +  F   + ++ ++       +      AG+ K    H +R   AT   ++G     +
Sbjct: 298 PHRYLFEDASTREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATHLLESGVDIRHI 357

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               G +++     YT              ++ S +D
Sbjct: 358 QELLGHESILTTMRYTHVT------ADKISKLRSPLD 388


>gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM
           15897]
          Length = 340

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 82/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128
            LI ++  S      +  +   ++S    ++    D  +  +TT H+R+ +   +     
Sbjct: 64  ELIDKFIASKEIEGCSKRTTQYYKSTL-VMLENRTDIHFTHMTTDHLRTYLTDYQKINNC 122

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  S      ++   F W   + Y+  +P   + + K         + E ++       +
Sbjct: 123 SKVSIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETLSDESLEC-LRDSCD 181

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +     ++ +                  V         L  
Sbjct: 182 NLRDLAIIDLLASTGMRVGELVNINIEDIDFENRECVVFGKGNKERPVYFDARTKIHLKN 241

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +           +    ++  +   I  +    + G+++   H  R+  AT + D 
Sbjct: 242 YLKSRTDDNPALFVSLDKPFNRLQISGVEIRLRNLGRRLGIHRVHPHKFRRTVATRAIDK 301

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++ +  G   +D    Y 
Sbjct: 302 GMPIEQVQSLLGHSQIDTTMHYA 324


>gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29]
          Length = 279

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 9/262 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           ++  + K       A N+  S++ Y    ++    +    +I    I + +  +      
Sbjct: 6   ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           ++ +   +    K               +   +  ++  + ++KE+++          + 
Sbjct: 66  SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250
           +     +   GLR S+     ++ ++++   I+  ++       V LPD  +  L     
Sbjct: 125 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 184

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
             +      + +K    +     +  K    KA V    S H +R   AT    +G    
Sbjct: 185 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 244

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G + +     YT   D
Sbjct: 245 IVKELLGHENIKTTMIYTHITD 266


>gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
 gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259]
          Length = 299

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 78/284 (27%), Gaps = 24/284 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           K L   +          +  + + +    +              ++ I    +R  +  R
Sbjct: 6   KALTQRFLSYLASDKGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWR 65

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKED 178
                   +  + L+++R  +++ +    +  +P   V+ PK               +  
Sbjct: 66  MDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLF 125

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL 237
            +       EG +  L       +G+R ++        +  +   ++   K      +  
Sbjct: 126 DKTHFPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPF 185

Query: 238 PDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKA-GVNK-SAH 287
                +        +     +         + + +  TQ         +    + K S H
Sbjct: 186 GAELAEAFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT   + GA    +    G   ++    YT       L
Sbjct: 246 VLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELL 289


>gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 384

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 121/387 (31%), Gaps = 57/387 (14%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K  T+ GKI Y F+         G  +  R             +S L     KR    
Sbjct: 4   IKKYTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQE 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             R+     + + +E+ +      +  ++    +   +  ++   GD     IT    + 
Sbjct: 64  DERRF---FRDVCAEWMEQYRLT-VRESTLEKTQRIINIHVLPAFGDMVINNITPNVCQK 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            V        S  ++L    ++F +A+R EYV  NPC  V  P+ + +          + 
Sbjct: 120 VVNKWFLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRD 179

Query: 182 FKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
             + +          +    F  L YSG+R  +      + +     +++  KT T    
Sbjct: 180 ELNTFFDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLG 239

Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINN---------------DKQK 263
                          T++L D  M+ L      +   F+                     
Sbjct: 240 GKLIVQPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHF 299

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK---TVDQA 319
            +    + W        G+   S HG R   A++   +G    E     G     +    
Sbjct: 300 RSMNTPTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTL 359

Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSD 346
           + YT   ++  +     +R  + V++ 
Sbjct: 360 DVYTHTTEQQNVA--ALQRFENYVEAK 384


>gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 353

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 110/358 (30%), Gaps = 35/358 (9%)

Query: 16  TRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           TR GK     +Y+    G R +       T   A          +       +      +
Sbjct: 4   TRDGKTWRSQFYYEDWQGIRHKKNKRGFKTKAEAE------EWERNFRQQQRKDLDINFE 57

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             +  Y        L  ++  +    FD ++          +I T  IR+         +
Sbjct: 58  NFVEIYFADVENR-LRESTIKNKRYVFDLKVTPYFKKKKMCEIKTSDIRAWQNELIKQGY 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187
            P+        +  LF +AVR   +  NPC       +   + +  WTK++ +QF     
Sbjct: 117 APTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQFLPSMD 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232
           +  + R+AF  L ++G+R  +      + +      I   K+                  
Sbjct: 177 KKPEARMAFMLLYWTGMRIGELLALTYEDIDLEKRIISISKSYQRLDGKDVITPPKTPKS 236

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
              + +P    + L            N    +   +           + GV +   H +R
Sbjct: 237 NRKITIPPFLAEELKEYCSHLYGIMSNERMFRFTKSYMEHEIVRGIKETGVKRIRIHDLR 296

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
              A++  + G     +    G + ++    TY+      +   + + R+    + DD
Sbjct: 297 HSHASLLVELGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELADRLELENEEDD 352


>gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a]
 gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni
           ACN14a]
          Length = 349

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 100/318 (31%), Gaps = 53/318 (16%)

Query: 66  KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS 121
            +  T   +I+ Y         LA NS +++     + +      G      +    +  
Sbjct: 3   SQRGTPGNVIARYLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQGLCSLDAVGEAEVAG 62

Query: 122 GVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              + +           +S  + L ++R L ++A  +  V+ +    V  P    +  + 
Sbjct: 63  FAAALRLGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKA 122

Query: 174 WTKEDMQQFKSFWSEGSQPRLAF----------------------------EFLLYSGLR 205
            + + +    +  +   +  +A                             E L  +G R
Sbjct: 123 LSVDQVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGAR 182

Query: 206 CSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMT----------PIGKET 254
            S++    V  L     +++   K G    V L    +  L             P     
Sbjct: 183 ISEAVGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAA 242

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            F++    +++        +  A +AGV+  S H +R   AT   D GA    +    G 
Sbjct: 243 VFLSRRGNRLSRQSAWTVLRTAADQAGVDGVSPHVLRHSFATHLLDGGADVRVVQELLGH 302

Query: 314 KTVDQAETYT-KGADRIR 330
            +V   + YT    DR+R
Sbjct: 303 ASVSTTQIYTLVTVDRLR 320


>gi|306833437|ref|ZP_07466564.1| phage integrase [Streptococcus bovis ATCC 700338]
 gi|304424207|gb|EFM27346.1| phage integrase [Streptococcus bovis ATCC 700338]
          Length = 354

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 113/340 (33%), Gaps = 38/340 (11%)

Query: 13  KERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++  R GK +  +R     G+ ++      +       ++         +  ++      
Sbjct: 4   EKDKRTGKWLIQYRYTDWQGNRKKSTKRGFNTKREAEEWLR--------QFLLSQSCDFN 55

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
                 I  Y K      L  N+ I+     + +I+   G+    +IT  +IR       
Sbjct: 56  MKFSNFIDLYFKDCDAR-LKRNTIINKRYIINLKILPYFGNKKMNEITPANIREWQNIMI 114

Query: 128 HTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
               S   +L ++      +F  AV+   +  NPC  V    +K  + ++ +TK++ + F
Sbjct: 115 GKGYSQ-TYLKTINNQITTIFNHAVKLYGLQSNPCHKVGSMGKKKAKEMKFYTKDEFKLF 173

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
            +   +     + F  + ++G+R  +     V  +     +I   K+             
Sbjct: 174 INQLMDKRLSYVCFMVMYWTGIRVGELLALDVGDVDVKHKTISITKSYQRLEGEDVVTLP 233

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   +++PD   + L             +    ++           A +AG+ K  
Sbjct: 234 KTDASNRVIDIPDFLAEDLKDYLDYLYMPEPTDRLFTVSKYYLRRKLARGAKQAGIKKIR 293

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            H +R   A +  +       +    G ++++   +TY  
Sbjct: 294 IHDMRHSHAALLINMDKPILAISRRLGHESIETTLDTYGH 333


>gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 383

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 87/293 (29%), Gaps = 42/293 (14%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
            +I  Y         LA NS +++     +        G      +    I     + + 
Sbjct: 24  QVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAALRE 83

Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    P+S  + L ++R L ++A ++  V+ +    V  P       R  T + + 
Sbjct: 84  GDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVS 143

Query: 181 QFKSFWSEGSQPRL------------------AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              +    G                         E L  +G R S++    +  L  +  
Sbjct: 144 AVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRS 203

Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSI 271
           +++   K G    V L    +  L           +               +++      
Sbjct: 204 AVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQSAWS 263

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +A A  AGV   S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 264 ALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYT 316


>gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO]
 gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO]
          Length = 276

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 10/260 (3%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L+  +        L+  +  ++ S   +  +   + +  +I      +   +    PS+
Sbjct: 6   DLLKRFEAVLRSQKLSSMTVRAYMSAVRKFTQSIEELNVEEILKW---AETTAEGRKPST 62

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGS 190
              +  ++R   +    +  + +   L V+                +   +    + E  
Sbjct: 63  VNLYYCAIRRFLEEVSPEILLDLRNKLKVKGRSSTIPKALSEREFLKLWNKAVKIFDEDY 122

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTP 249
           +  L      Y+GLR S+     V H+      I    K   +  V +P      +    
Sbjct: 123 RQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPIPSKLKPYIFKIV 182

Query: 250 IGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
              +           + + +   S   K  A K G+   S H +R  +AT     G    
Sbjct: 183 PKLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIKHISPHVLRHTAATNLLKKGVNLK 242

Query: 306 ELMATYGWKTVDQAETYTKG 325
            +    G  ++   E Y + 
Sbjct: 243 IVQEFLGHSSLATTERYLRV 262


>gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
 gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp.
           2_A_57_CT2]
          Length = 304

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 80/281 (28%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRS---GVE 124
           LK+ I ++     + ++  N+  S++      +  + ++   + +++T  HI+      +
Sbjct: 2   LKFAIQDFLDDREFKNVTPNTLESYKLIIGQLNDFLTENEVVNVQEVTPNHIKKFILHYQ 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTK 176
            + +  ++    L  +R  F + +  E +  NP   ++                 +    
Sbjct: 62  KKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIKIDVFTDYHIKQMLNY 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               + +       +       L+ +G+R S+        +     ++            
Sbjct: 122 YRRIKQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRKRETM 181

Query: 237 LPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                          + +         E  F N   + +        FK  +        
Sbjct: 182 PITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMNFKDV 241

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             SAH  R         AG +   +       ++   E Y 
Sbjct: 242 RLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282


>gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
 gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826]
          Length = 301

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 23/295 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           I ++     +    A  +  ++     Q      D D   +  + +++ +       K++
Sbjct: 4   IDDHLAYLRYERGKAAQTLATYRRLLYQFAEAHRDRDLHALEPRDLQNYLTKTLGGGKYS 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188
           P++  Q   ++R  ++W  R   +  +P  +++ P++  +      T E +       + 
Sbjct: 64  PATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTLLEAPAT 123

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
            +    +     E    +GLR ++      + L  +      +  G     + +     +
Sbjct: 124 DNPNLIRDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVERLIFIGSKARE 183

Query: 244 LLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKF 292
            LA     +            F+N +  ++     ++  KA A     GVN   H +R  
Sbjct: 184 ALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALRLKAYAAERLPGVNVHPHMLRHT 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            A+    +      +    G K +   + YT   D   L      +        D
Sbjct: 244 FASHILQSSGDLRSVQELLGHKNLATTQIYTH-LDYQHLARTYDEKHPRAKKKRD 297


>gi|187930268|ref|YP_001900755.1| integrase family protein [Ralstonia pickettii 12J]
 gi|187727158|gb|ACD28323.1| integrase family protein [Ralstonia pickettii 12J]
          Length = 351

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 25/347 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  Y++    +  T+   
Sbjct: 6   KTPSGTWKAVIRKLGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVAGA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +          ++ S       +    G +    ++   +    ++R     S  
Sbjct: 65  LKRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGKSNN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A+++  +    NP  ++ +P       R  + ++  +  +  S  
Sbjct: 124 TVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRDRRLSLDEQARLFAAVSAH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245
           S P L +   L   +G+R S+        +  N   +  +  K G+   V L      +L
Sbjct: 184 SNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKNGSARVVPLTRAAADVL 243

Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                            F       K     F   + +     G+ +   H +R  + + 
Sbjct: 244 QLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMGLADLHFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             +AG +  E+ A  G K++   + YT              ++ +V+
Sbjct: 304 LVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVEKLDAVI 345


>gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis Bt407]
 gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 369

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   +++  +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAVYKAVINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPAEFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 98/341 (28%), Gaps = 29/341 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---EYINSPRKKP 68
            +++ +  ++I  ++  +G+  +           A  +A       +   E   +     
Sbjct: 7   YRKKDKGIQVIISYKV-NGKWKQKSKQGFKKKNDAKRAADKLLDDLKCNIENSLNTDYGN 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T K     + +          +  S+    ++      D +  KI T  I++ V++   
Sbjct: 66  ITFKDFTIMFLEHEILYK-EPGTIRSYRFALNRFKE-LNDLELTKINTMQIQTCVDNMIK 123

Query: 129 TP---SSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           T    S+   +++ +  +F         +A NP   ++  K K +       +   +   
Sbjct: 124 TGLASSTTKLYVSKLNTIFSNAIKPYNLIAKNPVDGIKILKSKKQEKIKALDKAKLKDLL 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
                 +  +A       GLR  +        +     ++   K                
Sbjct: 184 GKITYKKYYIASLIAATCGLRIGEVLGLTWADIDEINSTLTVNKQWKKLKSGNWGFGSVK 243

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
                  V +    +K L        T   N      ++   S   +    + G N S H
Sbjct: 244 SKNSNRVVPISPNTLKELKNFKKNFVTDIHNRIIVCADSINLSRGLRDCYKRNGYNISIH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327
            +R   AT+    G          G  T++     Y    D
Sbjct: 304 DLRHTYATMLIGNGVDFKTAAKLLGH-TIEMTMKTYAHVND 343


>gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
 gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH1134]
          Length = 369

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIQKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     A++Q  ++ NP    E PK++   I+ WT++++++F     
Sbjct: 125 ITNNSILLMHRILKSALNLAIKQNILSRNPAAFAEIPKKEKTPIQTWTEDEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|199599691|ref|ZP_03213060.1| integrase [Lactobacillus rhamnosus HN001]
 gi|199589415|gb|EDY97552.1| integrase [Lactobacillus rhamnosus HN001]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 29/337 (8%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + GK+  Y   ++   G+  ++          A ++A +        I   +    TL  
Sbjct: 6   KRGKVWQYEISYKDLDGKFKKIRKSGFPRKSDAELAA-SQVKSVYLDIKQYQAGAITLSE 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131
               +       S+   + I +E+    I +  G    R +T    +  +   ++ H P 
Sbjct: 65  YFERWIHLYKKNSVTEVTFIKYENTLSHIKQLFGGVLLRDLTRTLYQERLNIFAQNHAPR 124

Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   F   +R  L      +         ++   +  +   R    ++ +Q        +
Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATKRALDYQEWRQLIQGLDTSN 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKL 244
             ++       +G+R ++        +      I   KT                    +
Sbjct: 185 TEQMIIYIAAVTGMRYAEVLGLTKSDIDLTGGEISINKTWDYKYHTGFKKTKNTSSVRAV 244

Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289
           +  T    +                              +     K    G+ + + HG+
Sbjct: 245 VLDTASIMKLAKFLKLHAPETPQTPIFVSNGHSPVSAEINKILTKKLKSLGLPRITFHGL 304

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           R   A+I    G +   +    G   +   + TY   
Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341


>gi|29028668|ref|NP_803356.1| integrase [Staphylococcus phage phi13]
 gi|88195912|ref|YP_500723.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|156604018|ref|YP_001429963.1| integrase [Staphylococcus phage tp310-3]
 gi|258444472|ref|ZP_05692805.1| integrase [Staphylococcus aureus A8115]
 gi|18920592|gb|AAL82331.1| integrase [Staphylococcus phage phi13]
 gi|87203470|gb|ABD31280.1| integrase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|154818104|gb|ABS87530.1| integrase [Staphylococcus phage tp310-3]
 gi|257850363|gb|EEV74312.1| integrase [Staphylococcus aureus A8115]
 gi|329724941|gb|EGG61443.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2]
 gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2]
          Length = 351

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 90/343 (26%), Gaps = 36/343 (10%)

Query: 7   LPPFVTKERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +P +   +  + GK     YY    + RR +      +        AL            
Sbjct: 5   MPAY---KDDKTGKWEALFYYTDYKNERRKKHRRGFNTK-----REALEFEREFLTQSQF 56

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T K L S Y        +   +  + E   + +I+        + I   HIR  
Sbjct: 57  SI--EMTFKSLYSLYHNDMKSR-IKKTTMETKEYIVNTKILPFFEKMKVKDIKPIHIRKW 113

Query: 123 VE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  +++ +        +  +F +A+R   +  NPC       +K            
Sbjct: 114 QTDLLKMEYSKTYLKTIYNQLTAIFNYAIRFHNLDKNPCHIAGSIGKKDADEMQILSLQE 173

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
                      + +  +  L ++G+R  +      + +     +I   K           
Sbjct: 174 FNKMIDCVTDKENKFFYIILFWTGMRKGELLALTYEDVDFENKTITINKNFQIVKKERLI 233

Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      + + D  +  +             +    ++             KAGV 
Sbjct: 234 TDPKTPRGRRVIAVNDVVLNCIKDLWNTSYKPNKTDKIFYLSKDSLKRQLDTACKKAGVP 293

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R   A+     G     L    G + V      Y  
Sbjct: 294 RIRVHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCH 336


>gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 337

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 42/301 (13%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT 129
            L+  Y +       LA  +   +     ++ +++     +  ++   HIR  V      
Sbjct: 20  DLVERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQNSHIRRWVAQMNAG 79

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQ 180
             S       L+  R  + W  R+  ++ NP   V  PK      +  + +         
Sbjct: 80  GRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLASFA 139

Query: 181 QFKSFWSEGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              +     ++     E L          +GL    S  A          +    K G  
Sbjct: 140 SGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHVLGKGGKR 199

Query: 233 ITVELPDGFMKLLAMTPIGKETF-------------------FINNDKQKMNATQFSIWF 273
            +V +    +  +      ++                     F+  +  +++A       
Sbjct: 200 RSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQSIWQRL 259

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + ++ +AG+      H +R   A+    + +    +    G  ++   + YT+  D   L
Sbjct: 260 RQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTR-LDFQHL 318

Query: 332 G 332
            
Sbjct: 319 A 319


>gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08]
          Length = 310

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRK---H 128
           + ++         + N+   + +     +      GD    KI T  +R+ +   +    
Sbjct: 17  VEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLADTRLAGA 76

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
           +P++  +  ++ RV F+WA  +  +  +P  ++               +  +        
Sbjct: 77  SPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVA 136

Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
                   +G++     E L   GLR  + C   +  +       I T K     TV + 
Sbjct: 137 QARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMG 196

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATK--AGVNKSAH 287
              +  +      +  +   +  Q         +++         A         +   H
Sbjct: 197 TPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 257 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 307


>gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 380

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 50/363 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKP----- 68
           R  + + Y+    G+R    +           A+  A+  +  K   I  P         
Sbjct: 6   RSERWMVYYHDDLGKRHDKSFGRGELGKAKAEAFEKAVQEANEKLLPIPDPETVTAGIRV 65

Query: 69  --------------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQ 101
                                      TL  L  +Y               + E    +Q
Sbjct: 66  AAKAAGAGTEATVPPASQVIEKKPTGITLSELGKKYLDHMRASGRTEKHIRNVERLLDNQ 125

Query: 102 IIRKSGDFDYRKITTK--HIRSGVESRKHTPSS--------AIQFLTSMRVLFKWAVRQE 151
            +   G+     +T +   +   +  +  + S+          ++   +  +F + +   
Sbjct: 126 FVPVIGNKPVDSLTYQGDMVPFILHFKGVSGSTGKERSQYTVNKYCDYLSFIFNFGIDNG 185

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +  +NP  + ++PK +   ++  T +D ++         +  +   F L +    S+   
Sbjct: 186 FTRVNPLKNWKKPKVQPWDLK-LTLDDARKIMEHAEPHLKWAMEVCFNLGTRPGESELLS 244

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFS 270
                +     +++   + T     +P     L  M    +E+      +      T   
Sbjct: 245 LRWDDVDFAAGTVRIYASKTKTYRTVPINPEFLKRMEIEKQESVSGFVIEYMGRGLTTIR 304

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
             FK    +AG+      + +R   AT   + GA    +    G  TV   A+TY     
Sbjct: 305 KSFKNACQRAGITYPTRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLTADTYYHYMS 364

Query: 328 RIR 330
             +
Sbjct: 365 GEK 367


>gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
 gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 84/299 (28%), Gaps = 37/299 (12%)

Query: 72  KWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              I+ +   +     LA  S  ++    + + R       G     +       +    
Sbjct: 26  ARAIARFLDATWAERGLARASLDAYRRDLELLARWRDGTGGGLVGADREALFGYLAWRAG 85

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + P S  +    +R  +   V       +P   ++ P+      +  ++  ++     
Sbjct: 86  HGYGPRSNARLRACLRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGV 145

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
                 EG + R   E +  +GLR S+        +      ++ +        V L + 
Sbjct: 146 PDVSIPEGLRDRAMLELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEE 205

Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------------MNATQFSIWFKAKATKAGVN 283
               L                                        F    K  A  AG++
Sbjct: 206 SQDWLERYLRESRPALTGGRPVPADASGEVPLFIGASRSAPTRQDFWRAIKRHAAAAGID 265

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               + HG+R   AT   + GA    L    G  ++   + YT       +  ++ +R+
Sbjct: 266 PRTVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYT------LVAREHLQRL 318


>gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 328

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 41/292 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVE 124
              +        +++ ++  ++ +  DQ          ++    FD  ++T   +R  + 
Sbjct: 21  AERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMG 80

Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P S  + L S++  +++      +  +    V  P+         T++  ++
Sbjct: 81  DLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEK 140

Query: 182 FKSFWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
                  G           +     E L   GLR S+        +      +K      
Sbjct: 141 IFEQEDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQ 200

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKA 275
               V L     + +      +  FF  N                  K+         K 
Sbjct: 201 KQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQRITKK 260

Query: 276 KATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                     K+ H +R   AT   + GA    +    G  ++   E YT  
Sbjct: 261 YLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHV 312


>gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 386

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/383 (13%), Positives = 124/383 (32%), Gaps = 42/383 (10%)

Query: 5   LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPA-----YMSALTGSTP 56
           ++ P  + +++  +G I  Y   +R G      L          A       +    ++ 
Sbjct: 4   IKEPIRLRQKKLANGNISLYLDIYRNGKREYEFLKMYLIPERSKADKEMNRQTLQLANSI 63

Query: 57  KREYINSPRKKPTTLKW------LISEYRKSAHWGSL----AVNSRISFESYFDQIIRKS 106
           K + I + +              L  +Y ++          +  +  ++ S    +++  
Sbjct: 64  KSKRIVALQNGEYDFNDHYNTEVLFYDYYRAMCAKRRGNEESRGNWGNWYSCLRHMLKYE 123

Query: 107 GDFDY--RKITTKHIRSGVESRKH---------------TPSSAIQFLTS---MRVLFKW 146
            +      +IT + ++   +  +H                P +    L+    +R     
Sbjct: 124 PNERITFAQITPEWVQGFKDYLEHDAVAWGNDYRKRIKDKPLARNSKLSYFNKLRACLNQ 183

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A  +  +  NP   +E  K +       T E++++      E    + AF F   +GLR 
Sbjct: 184 AFEERVIPYNPMRGIESFKPEDGMRMYLTLEEVRRLAQTDCEYPNIKRAFLFSCLTGLRR 243

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           SD  R     +       +          +         A     +     +   +  + 
Sbjct: 244 SDIIRMTWSEVFQQGEYTRIIFKQKKTNGQEYLDITGQAAELMGKRGRPEEHVFDEIHSP 303

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           T  +   +    +AG+NK  + H  R   A +  D G   + +    G + +   + Y K
Sbjct: 304 TCTNTAIREWVLRAGINKKITFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAK 363

Query: 325 GADRIRLGIKNSRRISSVVDSDD 347
             D+ +   K    I +++++++
Sbjct: 364 VLDKNK--QKAVSSIPNILENEN 384


>gi|257431426|ref|ZP_05607800.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257277872|gb|EEV08536.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G   S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCHVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans
           LB400]
 gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400]
          Length = 307

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 86/294 (29%), Gaps = 31/294 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T    I+ Y  +      L+ ++   +    +++   +       ++   IR  V    
Sbjct: 1   MTAADPIAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLSAVDIRGAVSRAH 60

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +A      L++ R  ++W   +  +  NP  +V  PK+     +  + +D  +   
Sbjct: 61  AGGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLME 120

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-----------HLQNNIFSIKTQKT 229
                  EG +     E    SGLR ++      +            ++ +   ++    
Sbjct: 121 SPPAASPEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVEVLGK 180

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280
           G    V              +      + +D   +         +        K  A  A
Sbjct: 181 GNRRRVVPVGSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVA 240

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           G+      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 241 GIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-ALDFQHLA 293


>gi|258454466|ref|ZP_05702433.1| integrase [Staphylococcus aureus A5937]
 gi|437117|gb|AAA91615.1| integrase [Staphylococcus phage phi-42]
 gi|257863323|gb|EEV86084.1| integrase [Staphylococcus aureus A5937]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|282925002|ref|ZP_06332667.1| integrase [Staphylococcus aureus A9765]
 gi|282592696|gb|EFB97703.1| integrase [Staphylococcus aureus A9765]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +     +H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKTEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 398

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 106/378 (28%), Gaps = 62/378 (16%)

Query: 15  RTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K  Y F      G+R ++      T   A  +             +      +  
Sbjct: 7   RKRGEKWQYQFEAATIDGKRKQITKSGFRTKKEALEAGTKALAEYNNCGLTFTPSEISFN 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  + K     +L   +  ++       I  K G +  + +T   ++S +  + +   
Sbjct: 67  DYLDYWIKEYAQVNLKETTVDNYNKKIKLYIKPKLGIYKLKSLTPAILQSFINEKFNEGF 126

Query: 132 SAIQFL---TSMRVLFKWAVRQ-EYVAINPCLSVERP--------KRKTEGIRPWTKEDM 179
           S    L     +     +AV    Y+  +P  +V  P          + +     ++E M
Sbjct: 127 SRNTLLVLKGILSGSLNYAVEPLGYIKFSPMAAVRLPLKRAVPNTPTRKKEKYIISEEQM 186

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSI 224
           ++    +       L  +     GLR  ++     + +                   +  
Sbjct: 187 KKIFERFPFEHSSYLPLQLAYRCGLRLGEAFAITWEDVDFENGKLDINKQVQYKNKYWYF 246

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------------------------- 259
              K  +   ++L +  + +L      +    I                           
Sbjct: 247 SPPKYDSYRIIDLDNTIIDILKKYKQQQRKDKIYYGELYTELKINDKKQINEFDGTEIHL 306

Query: 260 -----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
                +   +        F     K G+     H +R   AT+   +GA    +    G 
Sbjct: 307 INIRENGTYIQPRVMQHCFHIIHHKLGIKELDYHSLRHTHATMLLSSGANIKAVQERLGH 366

Query: 314 KTVDQA-ETYTKGADRIR 330
           K +D   + YT   D++R
Sbjct: 367 KKLDMTLDVYTHVTDKMR 384


>gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer
           RA-YM]
          Length = 293

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 92/270 (34%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128
           + ++          ++N+  S+               G      +  K IR+ V      
Sbjct: 4   VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVKETEGADTLISVDKKVIRNFVVYLSEN 63

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKS 184
             +  +  + L+++R  + + V+   ++ +P  +V   K   E   P+++++M+  Q   
Sbjct: 64  NLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLL 123

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
              +    +L  E L  +G+R S+ CR  ++ +      I+       +  + + +   +
Sbjct: 124 NEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNKMREIPISENIKR 183

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATK--AGVNKSAHGVRKFS 293
            L +    +      N                          +   +   KS H +R   
Sbjct: 184 ELKLYLEKERKPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA   ++    G  ++   + YT
Sbjct: 244 ATHVLENGAEIAQVKEILGHASLASTQVYT 273


>gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555]
 gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555]
          Length = 287

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125
           LK  +++Y+K       +  +   + ++  ++     +        + IT  ++   ++S
Sbjct: 4   LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 63

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       +S  +    +R  + +  R+E V  N  L++E  K K +     TK ++   
Sbjct: 64  QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEVIV- 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG 240
                E    +     + ++G+R S+     ++ +        I   K      + + D 
Sbjct: 123 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 182

Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             K+L      +     +N         +++    +        + G  K  SAH +R  
Sbjct: 183 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            A+          ++    G   +     YT  + + +R  +   
Sbjct: 243 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVNVI 287


>gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 291

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 20/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG---VESRK 127
           I ++        +   N+  ++     +      +    +   IT   I S     E   
Sbjct: 5   IEDFLIYQKNIKNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQEKEG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L S+R    + ++   +  +P   ++ PK +    R  TKE +    S   
Sbjct: 65  KSKATVNRNLVSIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPD 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +    + +   E +  +G++ S+      + +      +  ++      V        
Sbjct: 125 SNTKRGLRDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVRELKKNRVVPFGQAARA 184

Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
            L                 F+    + M         K    + G+  + +   +R   A
Sbjct: 185 SLEAYLASEDDVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
               + GA  + +    G   +   + YTK
Sbjct: 245 IHMIENGADLNSMKELMGHANITATQHYTK 274


>gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 292

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 87/275 (31%), Gaps = 17/275 (6%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
              L   + +  H    L+ N+  S++    Q      D     I     R  + +    
Sbjct: 7   FDVLRKSFLRYVHIERQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARRYLFALYDQ 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K + S+  Q ++ ++   ++  R     +NP   ++ PKR           + ++F   +
Sbjct: 67  KASKSTIAQKVSCLKQFGRFVTRDTN-DVNPFEGLKAPKRVQTLPTFLVPSEYERFLEVF 125

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF 241
                 G +     E L  +G+R S+     V+ L ++  +     K        +    
Sbjct: 126 RTSDALGVRNVALIELLYATGMRVSELAGLNVKDLDSDLEYVHVYGKGRKERITPIGSFA 185

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKATKAGV----NKSAHGVRKFSA 294
            K L      ++          ++ +   +     +    KA      + + H +R   A
Sbjct: 186 RKALTDYLAERQPTEDEEQAVFLSRSGRRLTTDGIRKILKKADPFLSKHVTPHALRHSFA 245

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G  ++     YT      
Sbjct: 246 TDLLERGADLRAVQELLGHASLSTTGQYTHVTTER 280


>gi|78776442|ref|YP_392757.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78496982|gb|ABB43522.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 377

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 93/368 (25%), Gaps = 44/368 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHG----RRIRLPYPHE-------STFIPAYMSALTGSTPKR 58
            V       G   YY R        +R+++    +              ++A        
Sbjct: 12  GVQYYIKADGTKSYYVRYKDEENRLKRVKIGDETDGTTEVYCKNKRIEILNAQNKGEQPP 71

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           + + + RKK  TL  +  +Y  +      + ++      Y   I    G      IT   
Sbjct: 72  KIVKNHRKKVLTLNEVADKYFTT---KDSSRSTFDRISKYKKHIAPVLGHRGVTGITKND 128

Query: 119 IRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + S  +     +  +P +A   +     +F +  ++E           +  +       +
Sbjct: 129 LISIQDSIIKEQNLSPQTANMVIELFGTIFIYGFKEEMYEAVNPTLKVQKFKVRNTRERF 188

Query: 175 TKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +   +             + G    L  +  L +G R           +      I+ 
Sbjct: 189 LNKLEIEELFDAAKQYDEKNANGGVLELFTKLALTTGARMESVLNIKKCDIDLQNDIIRL 248

Query: 227 QKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK 279
                   +         + L         F         N     A Q     K     
Sbjct: 249 VDLKNGGEVYSGYITDTTRELLYQKSKAIKFTDYLISFNNNGKKIGARQLQTRLKPLLDD 308

Query: 280 A---GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
               G++          H +R   A+  A A     ++        + Q   Y K   D 
Sbjct: 309 LFNQGLDVKDRKNRIVIHSLRHTCASQLAMANVPILQIQELLNHADISQTVRYAKLQGDA 368

Query: 329 IRLGIKNS 336
            +  I+  
Sbjct: 369 NKKAIQGV 376


>gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD
 gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 84/279 (30%), Gaps = 38/279 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++           G       D    T +   + +++R    +S  + L++MR L
Sbjct: 26  PNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKSTSVARRLSAMRHL 85

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------G 189
           +++ + +     +P   +  PKR     +  +  D+ +      E               
Sbjct: 86  YRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRRARELSEAEDASPSKRLRA 145

Query: 190 SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E L  +GLR S+          ++    +   K      V L +   + +A  
Sbjct: 146 LRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGNKERLVPLNEASRQAMADY 205

Query: 249 ---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                             K  F    +   +    F+   K  A  +G+     S H +R
Sbjct: 206 LAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVASGLQARLVSPHVLR 265

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 266 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 304


>gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
 gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC
           23834]
          Length = 344

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 113/342 (33%), Gaps = 29/342 (8%)

Query: 2   TPSLRLPPFV--TKERTRHGK--IIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           + +  LP  +   +   ++GK  + YY+  +  GRR  +P   +        S L  +  
Sbjct: 6   SANSNLPDRMLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQEWSKLEAA-- 63

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRK 113
                  P+    T       Y ++      + N+  S  +   ++ +  G        +
Sbjct: 64  -----KLPKSARVTFPVAAERYLQNIISHR-SRNTISSANNAVRKLSKFFGGENPAPLDE 117

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           I   H+R  ++ RK TP  A   +  +  +F +A  Q + +          K+ ++  R 
Sbjct: 118 IEPAHVRRYLDWRKDTPGGANNEIGYLSAIFNYAREQGWTSKEN--PCRNVKKHSKKRRE 175

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              ED      + +   Q R   +    +G R  D       H+   I  I  QKTG  +
Sbjct: 176 VYIEDYLYQAVYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKL 235

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------KAGVNKS- 285
             E+     +++          F+N+  + ++    S  F            +     S 
Sbjct: 236 RFEISGKLKEIIDRIHQDNGYLFLNSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSA 295

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +R  +AT    A A         G  +    + Y + 
Sbjct: 296 FQFRDLRAKAATDIYLA-ADTRSASDQLGHASEQMTKIYIRR 336


>gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 29/352 (8%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALT------ 52
           T   ++ P +    +R G+    F K   +   ++ +    + +   A   A        
Sbjct: 27  TIKDKIEPGLQLRISRSGRKTCSFEKKFRKEGIKMTIGVFPDLSIKEARKKARELKRLMA 86

Query: 53  -GSTPKREYINSPRKKP---------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
            G  P+ E       +           T K L  +Y +        +  +       +  
Sbjct: 87  KGIDPREEKRQQQIAEDEKRLKARQDITFKELCYKYIEEY-AKIYTIYWQKDTARIHNYA 145

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                      I +  I             ++A QFL ++  +F  A++ E +  NP L 
Sbjct: 146 KPLF-LKKISDIKSNDIEQIFNDISKDGKYATANQFLITLSSIFNKAIKWELIDRNPTLK 204

Query: 161 -VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             +   +  E    + +                R      LY+G R ++       ++  
Sbjct: 205 IDKHKMQARERRLSYDEMSKFLHVLCGEATPLIRDFALLALYTGARKTNVLEMEWDNIDF 264

Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKA 275
              I+ I   K G    + L D  +++L    +  ++ ++ +  +  +      +  +  
Sbjct: 265 VRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK 324

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              KAG+     H +R+  A+  AD GA  + + A      +     YTK +
Sbjct: 325 ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDIKSTSIYTKVS 376


>gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 86/328 (26%), Gaps = 29/328 (8%)

Query: 26  RKGHGR--RIRLPYPHESTFIPAYM-SALTG--------STPKREYINSPRKKPTTLKWL 74
           R  +G+  R R   PH S                          E    P+K+  T    
Sbjct: 20  RLPNGKSHRERRKSPHSSKAASLRWGRERERYLLVHGPMRRASGEDTAQPKKEVPTFAEF 79

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              Y +          +   S E +    I+   GD    ++  + +         T   
Sbjct: 80  APRYVEGQVKGNGAKPSHVESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKN 139

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +     T++  L K AV  + +   P         + +       E  +  +      S
Sbjct: 140 KTINNIQTTLSTLLKAAVAWKVIEEVPVEIKRLRVVRKKMDFFDFDEFARLREFAAKAPS 199

Query: 191 QPRLAFEFLLYS--GLRCSDSCRAGVQ-----------HLQNNIFSIKTQKTGTIITVEL 237
                   LL    GLR  +                          I T K   I  + +
Sbjct: 200 DATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTVEWAEWRGQITTPKHDKIRVLPM 259

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                K L   P  ++          +     S   +    +AG+ +K  H +R    + 
Sbjct: 260 TQRLQKALRQLPRDRKLVLAQPSGDPLTVGLLSKRLRRVEKRAGLRDKGPHTLRHTFCSH 319

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  G  A  +    G  ++   E Y  
Sbjct: 320 LAMRGIPARVIQQLAGHSSLVTTERYMH 347


>gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
 gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 93/304 (30%), Gaps = 39/304 (12%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES 125
           IS + ++       +  +  ++E    Q +    D+        D+  +    +RS + +
Sbjct: 16  ISAWLEALRNERQASEETVEAYERDVRQFMIFLTDYHARPSELDDFADLKPMDLRSFLAA 75

Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
           R+   + A    + L+ +R   +   ++   +     ++  PK+     RP +       
Sbjct: 76  RRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTKGLPRPLSVAGALDV 135

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII 233
            E+   F +    G++       L   GLR S++       L + +        K G   
Sbjct: 136 TEEADAFSTEPWVGARDVAVLTLLYGCGLRISEALTLRGDALTDEMARSMTIRGKGGKTR 195

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284
            V L     + +A                        +                G+    
Sbjct: 196 LVPLIPAVHEAVATYRRLCPHDLDAGHPLFRGVRGGPLRPQIVQRNMARLRGAFGLPPSA 255

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           + H +R   AT    AG     +    G  ++   + YT         +    R+ SV D
Sbjct: 256 TPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYT--------AVDA-DRLLSVYD 306

Query: 345 SDDP 348
           +  P
Sbjct: 307 NAHP 310


>gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
          Length = 376

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 106/360 (29%), Gaps = 37/360 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +   +G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           I S R    T              L   +  Y++         N+    +S  D +   +
Sbjct: 69  IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYA 126

Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           G+     ++        ++             + S+   +          AVR + +  N
Sbjct: 127 GERFTLNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKN 186

Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P       E+PK         T E+++   +   +    + A+ F  + GLR SD     
Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            +++  +    +                  + L   P   +    ++       +  +  
Sbjct: 247 WKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens
           str. C58]
 gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD
 gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58]
          Length = 331

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 97/318 (30%), Gaps = 53/318 (16%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS---GVESRKH 128
           +  + +        A N+  S+E     +    G       +  T  + +    + ++  
Sbjct: 14  LESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQGF 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----- 183
             +S  + L+SMR  +++   +     +P   ++ P++     +  +  D+ +       
Sbjct: 74  AATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLAAQ 133

Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                        +  L  E L  +G+R S+     V+ L+      +   K      V 
Sbjct: 134 EAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVL 193

Query: 237 LPDGFMKLLAMTP-----------------------IGKETFFINNDKQKMNATQFSIWF 273
           L    ++ +                                F  N+ +  +    F+   
Sbjct: 194 LSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDL 253

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K  A +AG+     S H +R   A+     GA    +    G   +   + YT   +   
Sbjct: 254 KDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEE-- 311

Query: 331 LGIKNSRRISSVVDSDDP 348
                  R+  +V +  P
Sbjct: 312 -------RLQELVQTHHP 322


>gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
 gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026]
          Length = 341

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 114/339 (33%), Gaps = 24/339 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A        +    P       + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMDSLQEA-------NDSWVIPDASK--FRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R   AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +   +    GW+         +   R    +   ++I  
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIVATIKQIDE 336


>gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
 gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 29/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           +  ++ +          A ++  ++ S     +                  +    +R+ 
Sbjct: 10  RTAMALWISHLRAIDGAASHTLTAYSSDVAGFLAFLHRHRGESLGLAQLAGLGQSDMRAW 69

Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
           +     R  +  S  + L++++   +W   +E       LS + PK + +  RP + E  
Sbjct: 70  MAHERNRGLSGRSLARALSAVKNFIRWLAAREGFDATHVLSAKAPKYQRKLPRPLSVEAA 129

Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 ++         ++       +   GLR S++                  K    
Sbjct: 130 AEVLEQVEVQAQEPWIAARDSAVMTLMYGCGLRVSEALALKGSDAPLPEVLRIRGKGDKE 189

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS 285
             V +     K +A             +          +N    +   +      G+  +
Sbjct: 190 RLVPVLPAARKAVADYLRLCPFPMSRYEPLFRGARGGPLNPRLVAKSMERARLGLGLPAT 249

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H +R   AT     G     +    G  ++   + YT   D+ RL 
Sbjct: 250 ATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYT-AVDQARLM 297


>gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 95/298 (31%), Gaps = 39/298 (13%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127
             +  Y  +      L+  +  S+     +++  +    G+     I+   IR       
Sbjct: 8   AYLDGYLDNLISQRQLSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLH 67

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L++ R  F W   Q  VA NP   ++ PKR     +    +D  +  S
Sbjct: 68  AKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVS 127

Query: 185 FWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230
             S G           R  FE L  SGLR S+     +++ Q N ++             
Sbjct: 128 SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAM 187

Query: 231 ------TIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAK 276
                  + +  +    +  L            +     F++    +++A    +  KA 
Sbjct: 188 VTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAH 247

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A   G+      H +R   A+    +      +    G  ++   + YT   D  RL 
Sbjct: 248 AQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLA 304


>gi|15927578|ref|NP_375111.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|30043990|ref|NP_835517.1| integrase [Staphylococcus phage phiN315]
 gi|258413679|ref|ZP_05681953.1| integrase [Staphylococcus aureus A9763]
 gi|258447832|ref|ZP_05695967.1| integrase [Staphylococcus aureus A6224]
 gi|282928804|ref|ZP_06336397.1| integrase [Staphylococcus aureus A10102]
 gi|13701797|dbj|BAB43090.1| integrase [Staphylococcus aureus subsp. aureus N315]
 gi|257839632|gb|EEV64102.1| integrase [Staphylococcus aureus A9763]
 gi|257858929|gb|EEV81797.1| integrase [Staphylococcus aureus A6224]
 gi|282589539|gb|EFB94627.1| integrase [Staphylococcus aureus A10102]
 gi|285817688|gb|ADC38175.1| Integrase, phage associated [Staphylococcus phage phiN315]
 gi|312830375|emb|CBX35217.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44]
 gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44]
          Length = 348

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 90/303 (29%), Gaps = 42/303 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK 127
           L  ++  Y +       LA  +   +     ++    ++   +   +   HIR       
Sbjct: 16  LPEVVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMH 75

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
               SA      L+  R  F+WA ++E V  NP   V  PK      +    +D      
Sbjct: 76  GAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLAS 135

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            Q  ++     ++     E L   GLR ++     ++  Q +    +             
Sbjct: 136 FQNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQ 195

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNATQFSI 271
                   V +    +  L      +                  F+    ++++A     
Sbjct: 196 GKGSKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEAALFVGRRGERLSAQSVWS 255

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K +  +AG+      H +R   A+    +      +    G  ++   + YT+  D  
Sbjct: 256 RLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR-LDFQ 314

Query: 330 RLG 332
            L 
Sbjct: 315 HLA 317


>gi|253315027|ref|ZP_04838240.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 341

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200]
 gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200]
          Length = 385

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 92/355 (25%), Gaps = 45/355 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R+ K  Y  R     + +               A      K    ++ +    T    
Sbjct: 5   RKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFNEY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           + E+      G++A  + + +E      I+   G+   + +T    +  + +   K++  
Sbjct: 65  LYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYSKK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           +      +M      AV +  +      +  + +      +    +     +        
Sbjct: 125 TVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQFLTYI 184

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------SIK 225
                G +    F FL  +GLR  +      + +                          
Sbjct: 185 LNEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKILFGP 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------------- 272
            +   +  T+ L    +  L    I +    + N K                        
Sbjct: 245 PKNRSSKRTISLDSSTISHLRKMKIEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHPATLK 304

Query: 273 -FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +    K  +   + HG R   A     +GA    +    G  ++D     Y  
Sbjct: 305 FLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359


>gi|307277175|ref|ZP_07558279.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|312905113|ref|ZP_07764234.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|306506105|gb|EFM75271.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|310631503|gb|EFQ14786.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 17  ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +QI+   G      I+  + +  V+
Sbjct: 77  APDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDL 195

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVII 255

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375

Query: 327 DRI 329
           +  
Sbjct: 376 NNA 378


>gi|218780651|ref|YP_002431969.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762035|gb|ACL04501.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 408

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 98/373 (26%), Gaps = 45/373 (12%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTT 70
           +  R  ++ Y+  +R   G++ R           A          +   +     ++  T
Sbjct: 29  KAKRSKRVRYWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMT 88

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------- 123
            + L   Y        L    R   E   +      G    + IT   +           
Sbjct: 89  FEDLAKWYLALPKVKGLKSFWR--IEMNLNTFNETFGKTKIKNITALDLEKFQVDGLAQG 146

Query: 124 ---------ESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYV---AINPCLSVERP 164
                    E +K   +S         Q LT  R +   A   + V    +     V+  
Sbjct: 147 FKKRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNL 206

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +      R       +  +   +  +  R       Y+G+R  +        +      I
Sbjct: 207 QGGNANARDRVLTHDEFERIMANLPAHARPVIATAYYTGMRSGEIFPLTWDKVDLKERVI 266

Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +      K      V + +   ++L+  P    T  +   K +             A KA
Sbjct: 267 RLEAADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFLKKGEPIKK-LRNSLSTAAKKA 325

Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRL 331
            +          + H  R    T    AG     +M   G  T    + Y T  AD  + 
Sbjct: 326 NIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDAKN 385

Query: 332 GIKNSRRISSVVD 344
            +         VD
Sbjct: 386 AVNIMSSFLQPVD 398


>gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 348

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 100/305 (32%), Gaps = 45/305 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKIT------- 115
           L+  ++ Y  +      + N+  ++        R           D  + +I        
Sbjct: 41  LEEFLN-YFSTVKAR--SPNTIKAYAYDLILFFRFLKKRRGKVSDDIPFDEIDISDVDID 97

Query: 116 ----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164
                       ++      R +TP +  + + S+R  + +  R+ + ++ NP   +E P
Sbjct: 98  LIESVDLNDLYAYLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESP 157

Query: 165 KRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           K         T E+ ++  +        +        L  GLR S+     +  ++ +  
Sbjct: 158 KLSVRHPIYLTLEESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKL 217

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFK 274
           +    K     T+ L +  +K ++     +    + + K        ++++        K
Sbjct: 218 T-VIGKGNKQRTIYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVK 276

Query: 275 AKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RI 329
                A +     SAH +R  +AT+    G      L    G   V   + YT   D ++
Sbjct: 277 KHLKHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQL 336

Query: 330 RLGIK 334
           R  + 
Sbjct: 337 REAVN 341


>gi|315651061|ref|ZP_07904095.1| phage integrase [Eubacterium saburreum DSM 3986]
 gi|315486651|gb|EFU76999.1| phage integrase [Eubacterium saburreum DSM 3986]
          Length = 352

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/361 (11%), Positives = 102/361 (28%), Gaps = 40/361 (11%)

Query: 11  VTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+  + G       Y    GH ++             ++         +    +   +
Sbjct: 3   VYKDNNKKGSWFVSCYYKDYVGHKKQKVKRGFTTKKEAQSW--------ERDFLEHYSNQ 54

Query: 67  KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                K L+  Y +       L+       ++    I+   G+     IT   +R  + +
Sbjct: 55  PTILFKALVDVYLEDYKAKYKLSSYYVKE-KNIQSHILPYFGETKINNITPNMVRDWLNN 113

Query: 126 RKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +       +  +    L ++  +  +A +   +  NPC  V+  K  T+  + +   + 
Sbjct: 114 LQAKQGNTLSTETKNGILRNLSAILSYACKYYGLGSNPCKLVDALKDNTKKEKIFLTLEQ 173

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFS 223
            +         + ++ F+ L ++GLR  +        +  +                  +
Sbjct: 174 YKAFRSNITDIRDKVIFDLLFFAGLRRGELMALTFGDVDMDNKLLHISKTKGYAAGSYVT 233

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + T +   V LP   +  +                  +               AG+ 
Sbjct: 234 TPPKTTTSNRVVTLPGFLIDEIKEYKEHCLDTDAKTSLFSIGKASIEYKKDKYLKLAGLP 293

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
               H  R     +  + G     +    G   +     TY       +   + ++++ +
Sbjct: 294 YMRIHDFRHSHVALLVELGENPLLIANRLGHSDIKMTLNTYAHLYPNKQ--KELAQKLEN 351

Query: 342 V 342
           +
Sbjct: 352 L 352


>gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 328

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 33/279 (11%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKH 128
           + ++      L+  +  S+E    Q +         K      R+++   IR+ +  R+ 
Sbjct: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179
                 S  + L+ ++   K+  +++    +  L++   K+     R   ++        
Sbjct: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                        ++       L   GLR S++     Q++ ++  +++ Q     I  V
Sbjct: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200

Query: 236 ELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
            L     K +                   F     + +N   F  + +      G+    
Sbjct: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AH +R   AT     G     + +  G   +   + YT
Sbjct: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299


>gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 374

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 95/329 (28%), Gaps = 31/329 (9%)

Query: 26  RKGHGR--RIRLPYPHESTFIPAYM-SALTG--------STPKREYINSPRKKPTTLKWL 74
           R  +G+  R R   PH S                          E    P+K+  T    
Sbjct: 20  RLPNGKSHRERRKSPHSSKAASLRWGRERERYLLVHGPTRRASGEDTAQPKKEVPTFTEF 79

Query: 75  ISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              Y +          +   S E +    I+   GD    ++  + +         T   
Sbjct: 80  APRYVEGQVKGNGAKPSHTESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKN 139

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +     T++  L K AV  + +   P   ++R +   + +  +  ++    + F ++  
Sbjct: 140 KTINNIQTTLSTLLKAAVAWKVIEEVPVE-IKRLRVVRKKMDFFDFDEFAWLREFAAKAP 198

Query: 191 QPRLAFEFLLYSG---LRCSDSCRAGVQHLQN-----------NIFSIKTQKTGTIITVE 236
              +    +L  G   LR  +        L                 I T K   I  + 
Sbjct: 199 SDGIDLAIVLLGGDAGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLP 258

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           +     K L   P   +        + + A       +    +AG+ +K  H +R    +
Sbjct: 259 MTQRLNKALRQLPRECKLVLPQPSGEPLTAGLLDKRLRRVEKRAGLRDKGPHTLRHTFCS 318

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
             A  G  A  +    G  ++   E Y  
Sbjct: 319 HLAMRGIPARVIQQLAGHSSLVTTERYMH 347


>gi|69244690|ref|ZP_00602954.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257879459|ref|ZP_05659112.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257881742|ref|ZP_05661395.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890218|ref|ZP_05669871.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260558834|ref|ZP_05831023.1| phage integrase [Enterococcus faecium C68]
 gi|293560447|ref|ZP_06676939.1| integrase [Enterococcus faecium E1162]
 gi|294621631|ref|ZP_06700796.1| integrase [Enterococcus faecium U0317]
 gi|314937844|ref|ZP_07845160.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314941335|ref|ZP_07848228.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950094|ref|ZP_07853380.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953752|ref|ZP_07856621.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314992804|ref|ZP_07858205.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314997963|ref|ZP_07862859.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68196281|gb|EAN10710.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus
           faecium DO]
 gi|257813687|gb|EEV42445.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817400|gb|EEV44728.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826578|gb|EEV53204.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260075293|gb|EEW63606.1| phage integrase [Enterococcus faecium C68]
 gi|291598796|gb|EFF29848.1| integrase [Enterococcus faecium U0317]
 gi|291605595|gb|EFF35037.1| integrase [Enterococcus faecium E1162]
 gi|313588024|gb|EFR66869.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592608|gb|EFR71453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594271|gb|EFR73116.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313599758|gb|EFR78601.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642702|gb|EFS07282.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643535|gb|EFS08115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 379

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 115/376 (30%), Gaps = 44/376 (11%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +   R     Y   ++K  G+  ++      T   A  +A        + +    +K 
Sbjct: 1   MARLVKRGNSWQYEISYKKDDGKYTKIRKSGFKTKGEAKDAANELEYNLNKGLK-GDRKN 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
             L     ++ +    G+++  +   +E     I +         +     +  +     
Sbjct: 60  LLLSDYFEDWMQLYKEGTVSPITYRKYEDTLMNIKKYMPAVLISDLDRVGYQRFLNKYAK 119

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            H  S+ I+F   +R   K AV +  +  +P        + +   +       +  +   
Sbjct: 120 DHVKSTVIKFNNHIRASLKDAVEEGLIPFDPTRKAVIKGKDSLKPKEDKYLDYDQFKSLM 179

Query: 184 SFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
               E    + +   L+     +G+R ++      + +      I   KT          
Sbjct: 180 KLVEENLSAQYSSPMLVLVAGATGMRFAELLGLTWEDIDFEDQIITINKTWNYKLNEWGK 239

Query: 233 -------ITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIW 272
                    + +    + LL                       F N     +++   S +
Sbjct: 240 TKNETSNRKISIDKHTIDLLKKFKINQKELFENFEIKNPHNFVFFNLKNGLVSSNAVSKY 299

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
            + K  + G+ K  + HG+R   A+I    G     +    G  +++    TY       
Sbjct: 300 LRKKLKELGIEKQFTLHGLRHTHASILLYQGVNILSVSKRLGHSSLETTMSTYLHIV--R 357

Query: 330 RLGIKNSRRISSVVDS 345
            L  ++  +I++V DS
Sbjct: 358 ELEDQDKEKINTVFDS 373


>gi|294789661|ref|ZP_06754894.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate
           phosphoketolase [Simonsiella muelleri ATCC 29453]
 gi|294482373|gb|EFG30067.1| LOW QUALITY PROTEIN: xylulose-5-phosphate/fructose-6-phosphate
           phosphoketolase [Simonsiella muelleri ATCC 29453]
          Length = 350

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 106/350 (30%), Gaps = 23/350 (6%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKRE 59
           M+        + +   R+G      R   G R+R      +        S L       +
Sbjct: 1   MSKKQSKNNGIYQ---RNGTWYMDIRTPSGERVRRSLGTQDKQKAQELRSKLEH--EFWQ 55

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 K          ++ +       +        S    +  +       ++T   I
Sbjct: 56  QSRLGIKPKKLWDEAALKWLEEKKHEKKS---IDDDISRLRNL-PQLRGIFLDELTRDII 111

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            + +E +K  PS+  +++  +R +  +  R E+  I+    +++ K     IR     + 
Sbjct: 112 MAAIEPKKCKPSTKNRYIALVRAIL-YKARDEWGWIDEVPKLKQYKETGGRIRWLKPHEA 170

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV 235
           Q+      +    R    F L +GLR  +      + +    +         K    I V
Sbjct: 171 QRLIDALPDNF-WRQMAIFSLCTGLRQGNVFGLKWEQVDLARRIAWIYADETKANKAIGV 229

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
            L    +++L+        F   N             ++    KA +     H +R   A
Sbjct: 230 PLNKTAIQILSERLGKHPIFVFTNSVNNRIKELDDRVWERSLKKAQIKNFRWHDLRHTWA 289

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +     G     L    GW+ ++    Y        L  ++ +  + ++D
Sbjct: 290 SWLVQKGVPLLALKEMGGWEKLEMVMRYAH------LATEHLQSHADILD 333


>gi|269796152|ref|YP_003315607.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542]
 gi|269098337|gb|ACZ22773.1| site-specific recombinase XerD [Sanguibacter keddieii DSM 10542]
          Length = 370

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 115/363 (31%), Gaps = 34/363 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            RT  G   +  R   GRR       ++        A   +         P+   T ++ 
Sbjct: 4   RRTPSG--RWQVRVKDGRRDVASKTFDTKRSAQAWEAEQKAKLSGGAWVDPKAGRTPVRE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPS 131
           +I EY  +   G ++  + ++      ++    G      +T + +++   V++     S
Sbjct: 62  VIDEYLAT-RPGIVSSKTLLTEHLLLGKVTPALGRLPVSAVTREDVQTDLGVQALGLATS 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFWS 187
           S  ++   +  LF ++V +     NP    + P      +   + P+T E++++  +   
Sbjct: 121 SVKRYRGILSALFTYSVARRLRETNPVSGTKLPSGAEGHERTEMAPYTLEELREVAAACM 180

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           E S       FL  +GLR  +     V+ +                   + +        
Sbjct: 181 EQSPDGDITLFLGLTGLRWGEMAALRVKDVLEVPRRAIRVSRSAPTGHAIRETTKGGRDR 240

Query: 248 TPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNK-------SAHGVRKF 292
                E  +    ++ +                +     K GV+          H +R  
Sbjct: 241 FVPLVEDVWQIVARRMVGRAPDDLLFVNPSGRIWGGWNWKCGVSWAQHARGRRVHDLRHT 300

Query: 293 SATISADAGATAHELMATYGWKTVDQA----ETYTKGADR---IRLGIKNSRRISSVVDS 345
           +AT+   +G     + A  G  T          Y   ++    +RL  +   R++     
Sbjct: 301 AATLWLSSGVPPKTVQAWLGHSTATMTLDLYAHYLPASEADAGLRLMNE---RLAGGARG 357

Query: 346 DDP 348
           D P
Sbjct: 358 DRP 360


>gi|237811004|ref|YP_002895455.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
 gi|237503562|gb|ACQ95880.1| phage integrase family protein [Burkholderia pseudomallei MSHR346]
          Length = 349

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 25/351 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      R+                   +         +  +I     + TT+   
Sbjct: 6   KTPSGTWKATIRRVGWP-TAAKTFRTKRDAEDWARRTEDEMVRGVFIQRAPSEKTTVADA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +         +++    +   ++    G +    +T   +    + R     +  
Sbjct: 65  LDRYEREIVPTK-KASTQRREGARIRELKANFGKYSLAAVTPDLVSRYRDDRLARGKANN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF  A+++ ++    NP  ++ +P       R  ++ +  +  +   + 
Sbjct: 124 TVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRNRRLSESEQAKLLATVDQH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
           S P L +   L   +G+R S+        +      ++   T       +P   +  L  
Sbjct: 184 SNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDTKNNAARTVPLTKLAALVL 243

Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                            F       K  A QF+  +     + G ++   H +R  + + 
Sbjct: 244 QNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKRTGLIDFRFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             +AG T  E+ +  G K++     YT              ++ +   S  
Sbjct: 304 LVEAGLTDQEVASISGHKSMQMLRRYTHL-----RAEDLVSKLDAFASSRR 349


>gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment']
          Length = 349

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 92/305 (30%), Gaps = 55/305 (18%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------------------------GD 108
           I  Y        + + ++  ++     Q                              GD
Sbjct: 28  IEAYLLYLQAERAASPHTLKNYAIDLQQFRTFLRAGESSQLEPTVSAVERPVVRDTGRGD 87

Query: 109 FDYRKITTKHI--------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             +R+I    I         + +  R    SS  + L ++R  F++  R+  VA NP   
Sbjct: 88  ALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAANPAKL 147

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           V  PK         T +++ +  +   E    G++     E    SG+R S+     V+ 
Sbjct: 148 VSTPKLPKRLPAYLTVDEVDRLLASPGEQDLPGARDLAILELFYASGIRLSELTGLDVRD 207

Query: 217 LQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI--------------NNDK 261
           +      ++ +  G     V +    +  L      +                   N   
Sbjct: 208 VDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPESVALFLNRQG 267

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +++    +        ++GV    + HG+R   AT    AGA    +    G   +   
Sbjct: 268 GRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTT 327

Query: 320 ETYTK 324
           + YT 
Sbjct: 328 QRYTH 332


>gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 28/286 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LK  I++Y     +   L   +  ++++  +Q I   G+ +  K    +       R + 
Sbjct: 3   LKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDK-EVLNAYLVYLHRMYK 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IRPW 174
             +  + + S++ LF +   +E + INP   V+   R+                      
Sbjct: 62  QKTVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYK 121

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233
            +   +  +       +     E L  +GLR S+ C    +++           K G   
Sbjct: 122 ERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKER 181

Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVN 283
            +++ +         + K        +  FF+N     ++           A   +A +N
Sbjct: 182 YLQIGNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADIN 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + H  R   AT   +       +    G  ++   + YT      
Sbjct: 242 ITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEK 287


>gi|52081940|ref|YP_080731.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52787324|ref|YP_093153.1| YdcL [Bacillus licheniformis ATCC 14580]
 gi|52005151|gb|AAU25093.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52349826|gb|AAU42460.1| YdcL [Bacillus licheniformis ATCC 14580]
          Length = 364

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 96/340 (28%), Gaps = 32/340 (9%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           V K++ R     YYF      R G  ++I+      S        A   +  + E  +  
Sbjct: 3   VYKDKERG---TYYFIISYTNRNGEYKQIKRRGFKSSGEAK---RAEAETLLRLETDDGE 56

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +   T +++  EY K       A +   +       +I + G      I ++ I     
Sbjct: 57  NEDNPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQN 116

Query: 125 SRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + A   +    +  +F +A++QEY   NP         + +    +   D  + 
Sbjct: 117 DLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKA 176

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +       F  L YSG+R  +        +  +  +I   KT     V  P    
Sbjct: 177 FIQHVDDQLYYALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTS 236

Query: 243 KLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            +  +                                ++ T     +      A V K  
Sbjct: 237 SIRKIMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIR 296

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            H  R   A+   +       +    G K V      Y+ 
Sbjct: 297 LHDFRHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSH 336


>gi|282919848|ref|ZP_06327580.1| integrase [Staphylococcus aureus subsp. aureus C427]
 gi|282316486|gb|EFB46863.1| integrase [Staphylococcus aureus subsp. aureus C427]
          Length = 345

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKKAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 291

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 86/271 (31%), Gaps = 18/271 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
            +L  ++            +  ++     +I  +  D     +TT  ++         H+
Sbjct: 10  DYLYEQHLTHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       ++  FK  +++++  +N       P          T  ++    +  S+ 
Sbjct: 69  WSTVKIDRNGLQFFFKHVLQRDWEWLNIVK----PPHVKTLPDILTPSEVSLLINATSQ- 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + ++ F  L   GLR  +     V  + ++     I+  K G    + LP   +  L  
Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183

Query: 248 TPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                           N +   M+        KA     G+ KS   H +R   AT   +
Sbjct: 184 YWQTHKNSRYLFPSQFNLNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +    G  +++    YT   D  R
Sbjct: 244 RGLDLRSVQHLLGHNSLNATAKYTHLTDISR 274


>gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 399

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 29/352 (8%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALT------ 52
           T   ++ P +    +R G+    F K   +   ++ +    + +   A   A        
Sbjct: 27  TIKDKIEPGLQLRISRSGRKTCSFEKKFRKEGIKMTIGVFPDLSIKEARKKARELKRLMA 86

Query: 53  -GSTPKREYINSPRKKP---------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
            G  P+ E       +           T K L  +Y +        +  +       +  
Sbjct: 87  KGIDPREEKRQQQIAEDEKRLKARQDITFKELCYKYIEEY-AKIYTIYWQKDTARIHNYA 145

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                      I +  I             ++A QFL ++  +F  A++ E +  NP L 
Sbjct: 146 KPLF-LKKISDIKSNDIEQIFNDISKDGKYATANQFLITLSSIFNKAIKWELIDRNPTLK 204

Query: 161 -VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             +   +  E    + +                R      LY+G R ++       ++  
Sbjct: 205 IDKHKMQARERRLSYDEMSKFLHVLCGEATPLIRDFALLALYTGARKTNVLEMEWDNIDF 264

Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKA 275
              I+ I   K G    + L D  +++L    +  ++ ++ +  +  +      +  +  
Sbjct: 265 ARKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK 324

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              KAG+     H +R+  A+  AD GA  + + A      +     YTK +
Sbjct: 325 ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDIKSTSIYTKVS 376


>gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 296

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124
            +LK  +  Y +     + +  +  ++    +   +           +      IRS + 
Sbjct: 1   MSLKAFVD-YLELE--RNYSQLTIKAYSKDIEAFQKYLKKNHETTTIKTANYSQIRSWIV 57

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                K +  +  + ++++   +K+ ++ E +  NP    +  K   +   P+++ ++  
Sbjct: 58  QLVESKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAM 117

Query: 182 -----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITV 235
                      +G + +L  E    +G+R  +     ++ +     +     K      V
Sbjct: 118 AIDDLQHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYV 177

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKA--GVNK 284
            L D   K +      ++      D++         K+  T          + A   V K
Sbjct: 178 PLLDSVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKK 237

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H +R   AT   + GA  + +    G  ++   + YT 
Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH 277


>gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
 gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73]
          Length = 312

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 42/310 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125
             +I  + +        +V +  +++        K   +     + +     ++ S +++
Sbjct: 4   SAVIDRFLEMMSAERGASVRTLFAYQHDLQWAQNKLSSYSLSFFSAQREDLINLLSLMQT 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------------- 172
                +S  + L+++R  F++   +     +P   ++ P++     +             
Sbjct: 64  AGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123

Query: 173 -PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTG 230
                +  +     +    + ++  E L  +GLR S+     VQ ++     I    K  
Sbjct: 124 AQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGKGE 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG 281
               V L +   ++L+   + ++            A            +   K  A +AG
Sbjct: 184 KERVVLLSEKARQILSKWLVLRDQGKDAKSFYLFPARSSTGYIARQFVARGLKDLAKRAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +   N S H +R   A+     GA    +    G   +   + YT   +          R
Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLE---------AR 294

Query: 339 ISSVVDSDDP 348
           +  +V+   P
Sbjct: 295 LHRLVNEHHP 304


>gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPSSA 133
           Y +       ++++  +++ YF   +      D   +T + I       V+ +  + +  
Sbjct: 36  YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 95

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++  ++   + +          +            ++E+M+          + R
Sbjct: 96  NMRINAIKFYYEKVRKGKRQYYGGIARAKE---YKALPEVLSREEMKS-IFAQLSNRKHR 151

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMT 248
                +  +GLR S+      Q + +    I+    G          +L +         
Sbjct: 152 CMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREY 211

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
              K  F      ++ + +      K  A KAG+      H +R   AT   + G     
Sbjct: 212 RPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRT 271

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   +     Y   ++
Sbjct: 272 IQELMGHTDIKTTAIYLHVSN 292


>gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
 gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 322

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
                   +   +   F   +R+        IT KH++  +         P++    +++
Sbjct: 38  QAEGFRKRTIDDYTKLFRYFMRELNIDRVEIITAKHVQMYINKLISRDLAPATVNIRISA 97

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195
           ++ +FK    Q Y   NP +   + +     I       +++           G +   A
Sbjct: 98  LKSIFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCA 157

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG 251
              +L+ GLR ++  +  V  L  +  +I       K      V +     + L M    
Sbjct: 158 MLLMLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRVAEELRMLIEE 217

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
              +F       +                      AG++K    S H +R   AT     
Sbjct: 218 SRDYFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRN 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + + LM   G   +     Y +  D  
Sbjct: 278 GGSVNALMRIMGHADITTTMRYVRLNDEA 306


>gi|148268476|ref|YP_001247419.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394539|ref|YP_001317214.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257793278|ref|ZP_05642257.1| integrase [Staphylococcus aureus A9781]
 gi|258419785|ref|ZP_05682748.1| phage integrase [Staphylococcus aureus A9719]
 gi|147741545|gb|ABQ49843.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946991|gb|ABR52927.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787250|gb|EEV25590.1| integrase [Staphylococcus aureus A9781]
 gi|257844196|gb|EEV68582.1| phage integrase [Staphylococcus aureus A9719]
 gi|315128690|gb|EFT84692.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728069|gb|EGG64512.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 345

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N]
 gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N]
          Length = 325

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 83/299 (27%), Gaps = 42/299 (14%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKH--- 128
           + ++ +        + ++  ++    + +  +        + ++  HIR  +        
Sbjct: 8   LEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGL 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            P S  + L + R  ++W      +A NP   V  PK      +  + +  Q        
Sbjct: 68  GPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPA 127

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------KTQK 228
                    +     E L  SGLR S+       + ++                     K
Sbjct: 128 QLSTDPVSLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEAEVVVLGK 187

Query: 229 TGTIITVELPDGFMKLLAMTPI-------------GKETFFINNDKQKMNATQFSIWFKA 275
            G    V +    +  L                       F+     +++     +    
Sbjct: 188 GGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLAR 247

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            A +AGV      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 248 LAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTR-LDFQHLA 305


>gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
 gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492]
          Length = 376

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 25/306 (8%)

Query: 35  LPYPHESTFIPAY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           L    +     AY   SAL  + PK+    SP   P         Y ++      + ++ 
Sbjct: 61  LSGFFDRHVETAYIDYSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTV 112

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++ +YF +  +     + R I  + I + +    ++R  +       + S++  F    
Sbjct: 113 RAYTTYFKEFQQYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNLRINSIKFYF---- 168

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +       C  V+R KR+       +KE+++          +    F  L  +GLR S+
Sbjct: 169 EKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISE 228

Query: 209 SCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQK 263
                   +  +     ++  K        L    ++ L         +E  F     + 
Sbjct: 229 LLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEP 288

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +  S   K  A +AG+ K    H +R   AT   + G     +    G   +   E 
Sbjct: 289 FTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEM 348

Query: 322 YTKGAD 327
           Y   +D
Sbjct: 349 YVHISD 354


>gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3]
 gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3]
          Length = 443

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 92/334 (27%), Gaps = 56/334 (16%)

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV 123
             T   +I  Y         LA NS +++     +        G      +    +    
Sbjct: 86  RGTPAGVIERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFA 145

Query: 124 ESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +           +S  + L ++R L ++A  +  V  +    V  P       +  +
Sbjct: 146 AVLRTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALS 205

Query: 176 KEDMQQFKSFWS-----------------------------EGSQPRLAFEFLLYSGLRC 206
            + +    +  +                                +     E L  +G R 
Sbjct: 206 IDQVVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARI 265

Query: 207 SDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264
           S++    V  L     S++   K G    V L    +  +A          +        
Sbjct: 266 SEAVGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAV 325

Query: 265 ---------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                    +        +  A  AGV   S H +R   AT   D GA    +    G  
Sbjct: 326 FLSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHA 385

Query: 315 TVDQAETYT-KGADRIRL--GIKNSRRISSVVDS 345
           +V   + YT    DR+R      + R + + + S
Sbjct: 386 SVSTTQIYTLVTVDRLREVYAASHPRALGAALGS 419


>gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 326

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 97/300 (32%), Gaps = 47/300 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITT 116
           L   +  Y  S+     + N+   +       +R                 + D  K+  
Sbjct: 7   LDDFLD-YLSSS--KGHSENTIKEYYYDLRIFLRYMILRKTNFYDNVKSLDEVDIDKVDE 63

Query: 117 ------------KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163
                        +I    + RK +  S  + ++++R  F +   + + + INP  SV+ 
Sbjct: 64  DLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDL 123

Query: 164 PKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK +         +                   ++        L  G+R S+  +  +  
Sbjct: 124 PKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISS 183

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSI 271
           +++ +      K      + L +  +  +    + +        FI+  K++M+      
Sbjct: 184 IKDEMIR-VLGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMSNRSIQH 242

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             +     +G++    + H +R  +AT+    G A    L    G +++   + YT   D
Sbjct: 243 MIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVND 302


>gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium
           matruchotii ATCC 14266]
          Length = 331

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 77/291 (26%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126
           L+  I+++ +  H     +  +   + S      R      DF    +      +    +
Sbjct: 40  LQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCRHAHTFEDFTLVNLRAWLGAAVDAGK 99

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +             W  RQ Y+  N    +  PK         T    +      
Sbjct: 100 SRATIARRAAAAR--SFSSWCERQGYLDTNVAARLAVPKSGRSLPTVVTPTAAETLMVSS 157

Query: 187 SEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG 240
              +     +     E L  +G+R S+ C   +  +         T K      V   D 
Sbjct: 158 QATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKVTGKGNKQRVVPFGDP 217

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN------------ATQFSIWFKAKATKAGVN-KSAH 287
               L           +N  K   N                         + GV+    H
Sbjct: 218 AASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVVARAGEQLGVDGLGPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            +R  +AT   D GA    +    G  ++   + YT  +  R++     + 
Sbjct: 278 SLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAH 328


>gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens]
          Length = 298

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 88/278 (31%), Gaps = 22/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT-KHIRSGVESRK 127
           +  Y +       ++ ++  ++    ++++        G +    I   + + + +  + 
Sbjct: 5   LDAYCEHLRSERQVSPHTLSAYRRDLEKVVGWCQKQNIGSWAALDIQRLRSLIARLHQQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRALQLLEGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L   +       K      + +     
Sbjct: 125 EDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGRKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L              +  F++   +++      +  KA   +  G N   H +    A
Sbjct: 185 EALEQWLALRALTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERELGQNLHPHML-HSFA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +   ++      +    G   +   + YT   D   L 
Sbjct: 244 SHLLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLA 280


>gi|15924992|ref|NP_372526.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49484247|ref|YP_041471.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|118725054|ref|YP_908790.1| integrase [Staphylococcus phage phiNM3]
 gi|156980319|ref|YP_001442578.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253729788|ref|ZP_04863953.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255006790|ref|ZP_05145391.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258434312|ref|ZP_05688713.1| integrase [Staphylococcus aureus A9299]
 gi|297589939|ref|ZP_06948579.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|14247775|dbj|BAB58164.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49242376|emb|CAG41088.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|104641819|gb|ABF73161.1| integrase [Staphylococcus phage phiNM3]
 gi|156722454|dbj|BAF78871.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726523|gb|EES95252.1| phage integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257849260|gb|EEV73241.1| integrase [Staphylococcus aureus A9299]
 gi|269941477|emb|CBI49874.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|297577067|gb|EFH95781.1| integrase [Staphylococcus aureus subsp. aureus MN8]
          Length = 345

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 307

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 27/282 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           ++  +  +          + N+  ++ +   + +      G  D   +    +   V + 
Sbjct: 8   VERAVDAFMAHLAVERGSSPNTLRAYGNDLRRYVAHLRERGVDDLAAVQEADVSGFVAAL 67

Query: 127 KHTPSSAIQFLTS-----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +  P+       +     +R L ++A R   V  +   +V  P       R  T ++++Q
Sbjct: 68  RSGPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLTVDEVEQ 127

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236
             +        G + R   E L  +G R S++    V  L     ++    K G    V 
Sbjct: 128 LLAGCIGDGPTGLRDRALLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGKQRVVP 187

Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283
                              LA    G     +N    +++        +  A  AGV   
Sbjct: 188 VGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSAWHVLRGAAEVAGVRAE 247

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            S H +R   AT     GA    +    G  +V   + YT  
Sbjct: 248 VSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHV 289


>gi|296444917|ref|ZP_06886879.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257585|gb|EFH04650.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 430

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 100/380 (26%), Gaps = 46/380 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRK- 66
           FV + R   G      R    RR+ L               + +           + +  
Sbjct: 42  FVVEYRPHGGG-----RSVAKRRVTLGKTTQLTPEQARRAAADMLAQVRLGADPAAEKAS 96

Query: 67  --KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             +  T+  LI  +      G L  ++  S+ +  D +    G      +T   + +   
Sbjct: 97  HREALTVAGLIEAFEAEHVAGKLKDSTGRSYRAGLDALKGAHGSLKAEALTRGQVAALHA 156

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174
             + T  +A + L +   +F W +++  V      + E  + K +    +          
Sbjct: 157 KMRATRYAANRALATWSKMFAWGMKRGLVPKGDNPAREIDRYKEDKRERFLTSEELARLG 216

Query: 175 ---------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                                 K   +              A   L+ +G R  +   A 
Sbjct: 217 DALREGETSGLVYEVDESKPKAKHAPKLENRRVKLDPLAAGAIRLLILTGARLREILDAQ 276

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSI 271
              + +    +    + T           + +       E         K          
Sbjct: 277 WSQVDSERGILFLSDSKTGRKSIYLSAAAQAVLANLPKIEGNPHVIAGAKDGEPRADLKK 336

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
            + A    AG+     H +R   A++ A A      +    G         Y    AD +
Sbjct: 337 PWSAVKRAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHTQAATTARYAHLDADPL 396

Query: 330 RLGIKNSRR-ISSVVDSDDP 348
           R  +      I++ +D   P
Sbjct: 397 RRAVDTIGATIAAAMDGGKP 416


>gi|758229|emb|CAA57755.1| integrase [Staphylococcus phage phi13]
          Length = 345

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL     
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLAEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 339

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 23/278 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRI-------SFESYFD--QIIRKSGDFDYRKITTKH 118
             T +  ++ + ++    + + ++          ++   +   I     D     +  K 
Sbjct: 35  RLTWEEAVNLFIQARRAETSSDDTIKFERNSLKCYQRILEEQDIEPDIYDISIDLLRNKF 94

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   VE + +  ++    + +++  F +   + ++  NP   ++  K     I  +T+E 
Sbjct: 95  VMFMVEKKGYKLNTINNRIKAIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQ 154

Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTI 232
                +Q       G +  +    +L +GLR  +  +     +            K+   
Sbjct: 155 VVALFKQPDQNTFTGFRDFVMLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKP 214

Query: 233 ITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284
             +   D   KLL            + FF+    +++    F          AG+     
Sbjct: 215 RDIPFCDDVRKLLIRYIKARGDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRV 274

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           S H +R   A +        + L    G  + D  + Y
Sbjct: 275 SPHTLRHTFAKMYILQDGDPYSLQDILGHTSQDMVKKY 312


>gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage
           phBC6A52]
 gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 369

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTRKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P+  +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|17547341|ref|NP_520743.1| integrase protein [Ralstonia solanacearum GMI1000]
 gi|254241660|ref|ZP_04934982.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192]
 gi|17429644|emb|CAD16329.1| integrase-tyrosine recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|126195038|gb|EAZ59101.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192]
          Length = 400

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 102/365 (27%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYGELTVEQARSLAQEWLAQVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+K L +++ +         +++  ++S  D+ I+   G    + +  
Sbjct: 87  PAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 147 PDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLIS 206

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         E  +          LA         R  +        +      +    
Sbjct: 207 DEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEFAGRRGEIVTLQWDWVDFENRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           + T    +        L                 N   Q +   ++   +      AG  
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQHLTTGEYYNGWSRALKAAGAA 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   HG+R  SAT  A++G      MA    KTV     Y    D         R+ + +
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRKAAEL 380

Query: 343 VDSDD 347
           V +  
Sbjct: 381 VANRR 385


>gi|282917353|ref|ZP_06325108.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282318980|gb|EFB49335.1| phage integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 345

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSLLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 314

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 100/294 (34%), Gaps = 38/294 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH 128
           + +++          + ++  +++    Q       + GD   + I+  H+R+ +     
Sbjct: 8   VANQFLAYIQLEKRYSAHTFTAYQQDLTQFFIFLRSQYGDVSLQGISHLHVRTWLAWLME 67

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 S  + +++++  FK+A+R   V  +P   V  PK          ++ M+  +  
Sbjct: 68  EGIVAKSVNRKISTLKSFFKYAMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVEDN 127

Query: 186 WS---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229
            S               EG   RL FE L ++G+R S+      +H+  +  +     K 
Sbjct: 128 RSMRRGQEGRPIFADDLEGKTHRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGKG 187

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATK 279
                + +       +    + ++      DK          +K+         K   T 
Sbjct: 188 NKERIIPISKNLRDEIKGYRVMRDKALEMPDKEVLLVNPRSGKKLYPRYVYNVVKGYLTD 247

Query: 280 AGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +     +S H +R   AT   + GA  + +    G  ++   + YT  +   
Sbjct: 248 HEITTISRRSPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEK 301


>gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 385

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 92/355 (25%), Gaps = 45/355 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R+ K  Y  R     + +               A      K    ++ +    T    
Sbjct: 5   RKRNDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKIEEKLVNGSNIQDGKITFNEY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           + E+      G++A  + + +E      I+   G+   + +T    +  + +   K++  
Sbjct: 65  LYEWLNVFKKGNVAPRTYMVYEKNIRLHILPVFGELKLKDLTRIKYQKFINNLLEKYSKK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188
           +      +M      AV +  +      +  + +      +    +     +        
Sbjct: 125 TVETINVTMHHALDTAVNELGILEKNPTTKIKLRTTRVSSKNDDIKCYDIDELHQFLTYI 184

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------SIK 225
                G +    F FL  +GLR  +      + +                          
Sbjct: 185 LNEKGGFKYFSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFINKTLITTKRNEKILFGP 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------------- 272
            +   +  T+ L    +  L    + +    + N K                        
Sbjct: 245 PKNRSSKRTISLDSSTISHLRKMKMEQNKNTLKNGKYYKEYNFVFTHEDNSCMLHPATLK 304

Query: 273 -FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +    K  +   + HG R   A     +GA    +    G  ++D     Y  
Sbjct: 305 FLQQACKKGNLKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTANVYLH 359


>gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
 gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1]
          Length = 348

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 132/333 (39%), Gaps = 22/333 (6%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   R  +++ Y R    R   LP  H   FI A+  A            +P     ++ 
Sbjct: 2   QRIRRGDRVLCYHRPTGTRLPDLPETH-PDFIAAWAKAEASKPDL-----APPVADKSVA 55

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++   R S  W   A + R++   + ++I  + G    R +  KH+   +      P  
Sbjct: 56  KVVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVEMDLGKLDPNPR- 114

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L   R++F  A     +  +P   + +   K+ G   WT  ++  F++ W+ G++ 
Sbjct: 115 -NVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQ 173

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           R AFE L ++G R SD+CR    HL +     F  +       +          L     
Sbjct: 174 RAAFELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEE 233

Query: 250 IGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
                  +           +  +  +    S +  A A +AG+  ++ HG+RKF  T  A
Sbjct: 234 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 293

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +AG  AH +MA  G  ++ +AE YT+ A R  L
Sbjct: 294 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 326


>gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 327

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 42/304 (13%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG------------------DFDYRK 113
            ++ +Y        +++  +   +        R                     D D   
Sbjct: 11  AILKDYLIYKQTIKNMSKKTVDEYFIDLRTFFRFLKVMRGLVPDGTEFDEIKIDDVDLDL 70

Query: 114 ITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPK 165
           I T ++    +        R +  +S  +  +S++  FK+    +++   NP   +E PK
Sbjct: 71  IKTVNLELAYDYMNFLYRDRNNKSASRARKCSSLKGFFKYITNNKHLLDTNPVEQLESPK 130

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFS 223
            K    +  T E   +  +     ++ R      L+   GLR S+        + ++   
Sbjct: 131 NKKALPKYLTLEQSIELLNAVDGNNKQRDYCILTLFLNCGLRVSEMAGLNYNDIHSDGTM 190

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKA 275
               K      V L    +         +           FI+ + ++M+          
Sbjct: 191 RVVGKGNKERIVYLNSACIDAYNEYMKVRPIDEVKDKKALFISRNHRRMSVKTIQAMVYK 250

Query: 276 KATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIR 330
              K G++    S H +R  +AT+    G      L    G + +   E YT   +++++
Sbjct: 251 YLEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMK 310

Query: 331 LGIK 334
               
Sbjct: 311 NAAD 314


>gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 384

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 120/378 (31%), Gaps = 55/378 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + KE+ +     +YFR         G  ++         T     +  +        Y  
Sbjct: 7   LIKEKKKG----FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFK 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
              +        +  +  +++  ++ + +  S E      I++        +ITT  I S
Sbjct: 63  ESTED---FSMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDS 119

Query: 122 GVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +  T  S     Q    +   F  AV+   V +NP  + + PK K+E    WT ++
Sbjct: 120 FYVDKLDTGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDE 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
           + +F +   + S   + +   +++G+R  +        +      I+ +++   +     
Sbjct: 180 VNRFLNLIKDSSME-IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGL 238

Query: 234 --------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                       +  +   + L +           +D + ++  
Sbjct: 239 IFKEPKTKKSKRQISISQHVVNVLKKHKQKQEFQKEKLGVQYQDNNLIVCTDDGKPLDPR 298

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
                F     +A V + S H +R   ATI    G     +    G   V    + Y+  
Sbjct: 299 NLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHV 358

Query: 326 ADRIRLGIKNSRRISSVV 343
           +D   L  + + +  + +
Sbjct: 359 SDD--LQEQAAEKFENAL 374


>gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum
           H10]
 gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 330

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 109/311 (35%), Gaps = 49/311 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------------------- 110
           LK  ++ Y ++      + N+   +       +R                          
Sbjct: 13  LKDFLN-YLQTI--KGKSKNTIQVYFYDLRIFLRFLKIHRNLVDKNIEFNSIDITDVDIS 69

Query: 111 -YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164
             + +T   + + +      R +T  +  + + S++  F + + + + + INP + +E P
Sbjct: 70  LLKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESP 129

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           K      R    ++ ++  +  ++       +        L  G+R S+     + ++++
Sbjct: 130 KILKRLPRYLNFDESKKLLTSVNKADHEYAIRDYAIITIFLNCGIRLSELVGINLHNIKD 189

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSI 271
           N       K G   ++ L    ++ +      +           FI+   Q+++      
Sbjct: 190 NTLI-VFGKGGKERSIPLNRACLQAIDDYLKVRPVNGLKDKSALFISRRNQRISKESVQK 248

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             K   T+AG++    S H +R  +AT+    G      L    G +++   E YT   D
Sbjct: 249 IVKRYITEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LD 307

Query: 328 RIRLGIKNSRR 338
           + +L  +   +
Sbjct: 308 QQQL-KEAVDK 317


>gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 296

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 92/276 (33%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126
                Y +       + ++  ++ +  ++      + D      K+    IRS +     
Sbjct: 3   DAFENYLRLE--KKYSPHTVTAYLTDVEEFAAFLKEEDPTVELSKVNYPLIRSWIIHLVE 60

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K T  S  + + S++  + + VR   +   P       K + +   P+++++++   S 
Sbjct: 61  SKITNRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKEIEDVLSI 120

Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
            +E       + R+  E    +G+R S+     +  +  +        K      + L  
Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---------VNKSAHGVR 290
             ++ L    + ++    + +   +      ++ K                  KS H +R
Sbjct: 181 TVVESLEKYLLIRKDVETSEEFLFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHVLR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   D GA  + +    G   +   + YT  +
Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSS 276


>gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 359

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 29/356 (8%)

Query: 11  VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +  +  R+GK  Y     Y   G     R           A  S         E      
Sbjct: 11  LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 70

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123
                L   +  Y +           +I        I+++         ++     +  +
Sbjct: 71  TDKIYLLDWMQTYLEYQEKRDKKGIGQI---KAVTHILKEYAGERFILDRVDLAFCQGYI 127

Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171
           +    T          S+   +          AVR + +  NP       E+PK      
Sbjct: 128 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 187

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230
              T E+++   +   +  + + A+ F  + GLR SD      +++  +    +      
Sbjct: 188 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 247

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                       + L   P  ++    +        +  + + +  A  AG+ K  + H 
Sbjct: 248 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 305

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 306 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 359


>gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 410

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 17/308 (5%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISF 95
               ++       A      +R+   +  ++  T      ++Y   A       + R + 
Sbjct: 74  GEGATSLAEKRKLAEAKREEERQQEEARARENITFADYCANDYLPLARVTKKPESIRKTE 133

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY 152
           E   + +    G    + I   H++  + +      +P S      + R ++  A    +
Sbjct: 134 EHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMANAGRSPRSIQYVFATFRAIWNHARNNGF 193

Query: 153 VAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSC 210
           V +  P   V  PK   E  R  ++ +     +  +  S          L +G+R S+  
Sbjct: 194 VQVQSPTKGVALPKVNNERKRYLSRPEADALLAELATRSPQTHDLALLSLDTGMRFSEVT 253

Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                 +        I   K      + +     +L      G     I   +      +
Sbjct: 254 GLTWGCVDLDKGRIDILNAKGEKDRAIPMTARVKELFESMTPGASNELIFKSRVGGQIGK 313

Query: 269 FSIWFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            S  F     K G+NK         S H +R   A+   +AG   + +  T G  T    
Sbjct: 314 ISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVT 373

Query: 320 ETYTKGAD 327
           + Y+  AD
Sbjct: 374 QRYSHVAD 381


>gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 255

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 23/255 (9%)

Query: 109 FDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                +  + + S  E       +S  + + ++R    +A  +     NP   V  PK  
Sbjct: 1   MQISDVRPEDVASFAECLEGMARASVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIP 60

Query: 168 TEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           +   +    +D                 + R   E L  +G R S++    V  +     
Sbjct: 61  SRLPKAMDIDDVAALIAAGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGA 120

Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFS 270
           S +   K      V L    ++ +    +                F+N   + ++     
Sbjct: 121 SARLFGKGRKERVVPLGGYAVEAIDAYLVRARPSLASSGPGTPSLFLNTRGRPLSRQSAW 180

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---KG 325
              +  A +A +  + S H +R   AT     GA    +    G  ++   + YT   + 
Sbjct: 181 AIIQNAAERAKLSVHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRD 240

Query: 326 ADRIRLGIKNSRRIS 340
             R    + + R +S
Sbjct: 241 TVREVYALAHPRALS 255


>gi|254437019|ref|ZP_05050513.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252465|gb|EDY76779.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 368

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+        + 
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMAVRRHQD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G      +  ++    
Sbjct: 156 MTGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIEDLKHWRKTID- 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +Q +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLRWEQIQEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    S           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRHLSRDWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345


>gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 332

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 19/318 (5%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR     +      +   +  +   +E+++ P  K   L
Sbjct: 4   KKLTDGRYEVDVRPQGSEGKRIR-RKFDKKAEAQTFERYVLANFHNKEWVDKPADKRV-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             LI  + K     +     +        +I R+  +     IT K +      R     
Sbjct: 62  SELIELWWK-YQGQNTKHGEKEKLR--LYKIDREMSNPRIYMITRKFLMEYRSQRLSSGL 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P++  + L+ +  +F   +  E       +      R       +  ED        + 
Sbjct: 119 SPATVNRDLSVLSGMFSTLIEAEEFHSENPICAVSKLRLKNSEMSFLSEDEIVDLLSKAT 178

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G Q R+A    L +G R  ++     +H+  N  +    K G I ++ + D  + ++   
Sbjct: 179 GDQRRIALLC-LSTGARWGEAKNLRGEHIVGNKVTFVETKNGKIRSIPISDEMLTIIKTK 237

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G+               +F    K         +++H +R   AT     G     L 
Sbjct: 238 KSGQLFNAD--------YNEFRSLLKELKPDLPKGQASHALRHTFATHFMMNGGNIITLQ 289

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   + Q   Y   A
Sbjct: 290 RILGHSNIQQTMNYAHFA 307


>gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 319

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L++ +  +      +  +   +ES    + +        +I +  +R         R   
Sbjct: 44  LLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYLNRYENERHAG 102

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       M   F W   ++Y+  +P   + R K         + E+++  +      
Sbjct: 103 KVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLETLRDRCGT- 161

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +     +  +         T K      V         L   
Sbjct: 162 LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFDARTKLHLTAY 221

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +           N D  +++        +     AG+++   H  R+  AT + D G
Sbjct: 222 LQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRRTLATHAIDKG 281

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + R + 
Sbjct: 282 MPIEQVQKLLGHARIDTTMHYA-MVNQNNVKASHRRYLE 319


>gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
 gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock4-18]
          Length = 369

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KEYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAMDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F     
Sbjct: 125 IANNSILLTHRILKSALNLAVKQNIISQNPAAFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                     +    N     +    F   F      
Sbjct: 244 TIPVPRETIESLKRHKITINKEKLRFGSAYQDFDLINCNEFGMIIKKANFRKNFIRATHN 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337
           AG+     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 AGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISLTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium
           botulinum B1 str. Okra]
 gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B1 str. Okra]
          Length = 354

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 88/334 (26%), Gaps = 22/334 (6%)

Query: 12  TKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +++ +  + I  ++   G  ++               +  +     K     +      
Sbjct: 7   WRKKDKGWQFIISYKDSIGKWKQKSKQGFKTQKDGKPVIDKMLKELKKNVKTVNKSYNKL 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T       Y +       ++ +  S  +   +        +  KITT  I+  V+     
Sbjct: 67  TFSEFADIYVEHEKLYK-SIKTIESLITVLHKF-EDLNKKEMCKITTLDIQKIVDKVTKE 124

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++   +L  +  LFK A  +  +  +      +  +     +    ++  +     
Sbjct: 125 GLNNNTTRYYLKRLNTLFKSAKEEYNIIDSMPTKNIKVGKPVPTKKKALTDNEIKNLLED 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------- 238
            + ++  L     + +G+R  +       ++     +I   K    I   +         
Sbjct: 185 FKNNKYYLLNFLAVNTGMRLGELLGITWDNVDFKNNTITVNKQWKKIEKGVWGFGDVKSK 244

Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
                     + +  +          N      +          K  K G   + H +R 
Sbjct: 245 NSNRTIPVSNIVIKELMNHRNVININNRVLNFRSTNSVCAIVNGKFKKHGYTITFHELRH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT     G          G       +TY+  
Sbjct: 305 TYATRLIANGVDFKTAAQILGHSVEQTLKTYSHV 338


>gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7]
 gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7]
          Length = 314

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128
           L S+Y K       + ++   + S              D+  +  +HIR    + +    
Sbjct: 21  LFSDYLKFE--KQYSAHTVNQYVSQLGFAALYFNKLCDDWFGVQAEHIRRYSMALRAKQL 78

Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  +    L+ +R L+K+     + Q+    NP   ++ PK      +    + M +   
Sbjct: 79  SGRTISLKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPLPKNLDVDQMARLLE 138

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
              +     + +   E +  SGLR S+   A +Q +      I    K      + +   
Sbjct: 139 IPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDINAKSGEILVRGKGNKERLIPVGTK 198

Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            ++ L      +  F   +         K +++  Q  +  +    K G+      H +R
Sbjct: 199 ALEALKKWLTVRPQFAKPDEPGVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+   ++      +    G  ++   + YT   D   L 
Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299


>gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 304

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 9/262 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           ++  + K       A N+  S++ Y    ++    +    +I    I + +  +      
Sbjct: 31  ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           ++ +   +    K               +   +  ++  + ++KE+++          + 
Sbjct: 91  SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 149

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250
           +     +   GLR S+     ++ ++++   I+  ++       V LPD  +  L     
Sbjct: 150 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 209

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
             +      + +K    +     +  K    KA V    S H +R   AT    +G    
Sbjct: 210 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 269

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G + +     YT   D
Sbjct: 270 IVKELLGHENIKTTMIYTHITD 291


>gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether]
 gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 341

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+  +      +        I+ 
Sbjct: 298 SECVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 329


>gi|254452471|ref|ZP_05065908.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
 gi|198266877|gb|EDY91147.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
          Length = 368

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 112/343 (32%), Gaps = 18/343 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  ++I   +     ++        +I+          
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++        +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345
            +        +    + Y +   D +R  ++     + + +D+
Sbjct: 326 IVGRLLNHTQLSITGQRYVRPSLDALRPSMEIACAELLNRIDN 368


>gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM
           555]
 gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 328

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 46/293 (15%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG--------------------------DFDYRKITTKH 118
              + N+   ++      +R                                   +    
Sbjct: 28  KGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFEKIKIKDIDIDIIKQITLSDL-FAF 86

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           I      R +   +  + + S++  FK+   + + ++ NP L +E P+         + +
Sbjct: 87  ISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSLK 146

Query: 178 DMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +            +      F L  G+R S+ C   + +++ +  +    K     T+
Sbjct: 147 ESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLT-VIGKGNKERTI 205

Query: 236 ELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            L    ++ L      ++ +          FI+ +  ++N     I  K    KA ++  
Sbjct: 206 YLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSE 265

Query: 284 -KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGI 333
             + H +R  +AT+    G      L    G + V   + YT   D R+R  I
Sbjct: 266 KYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAI 318


>gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 308

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 27/281 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR--- 126
           + L+S + K     + + ++  +++       R         + +    +R  + SR   
Sbjct: 9   EKLLSMWLKERIIQNQSAHTISAYQRDLSDFFRFCEYKQLQLQDVEASDLREYLASRVEQ 68

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + + SS  + LTS+R   KWA + +Y+  NP   ++  ++          E + Q    
Sbjct: 69  DQLSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMIDIETVNQILDQ 128

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        + +   E L  SGLR ++     ++ +  N   ++          V 
Sbjct: 129 AAPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVP 188

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGV--NK 284
                 + L         +  +               +   Q     K +A +AGV  + 
Sbjct: 189 FGTKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRAGVNVDL 248

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R   A+    A      +    G   +   + YT  
Sbjct: 249 HPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHV 289


>gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 321

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 28/287 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--------- 122
           + +I  +  +      A N+R ++    +   +      +R +T + I +          
Sbjct: 26  EQIIQMFLTACA---KAPNTRRNYFRALEHFRQFLSGMRFRDVTWREIEAYKIYLTKGFY 82

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +   P+S   F+  ++  +KW       +   NP  +V  P       R +   + 
Sbjct: 83  RDGQKPLAPASVAAFIAPLKSFYKWGSDSSIGFFDHNPAQNVRIPAIAVTSRRHYLTRNE 142

Query: 180 QQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITV 235
                     +  +  L    L+  GLR S+ C    +    ++       T        
Sbjct: 143 VGKLLEALRRQSLRNYLIGLSLVLLGLRVSELCGIKWKDFHADMLETSIWLTVSHAKRGK 202

Query: 236 ELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
                  + L                         +   Q     K     +G+ K  + 
Sbjct: 203 TREVKIPRELWNMYQEHARRLAKGHEPDPELKLFAITPRQIERIIKQAGIASGIQKQPTP 262

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R  +AT++   GA+  ++  + G   ++  + Y    ++I+   
Sbjct: 263 HWLRHTNATLALLQGASLQQVQESLGHSHINTTQRYLHTVEQIKKAA 309


>gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
 gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213]
          Length = 339

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 67/314 (21%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y ++     L+ N+  ++    +    +    G     +IT   +RS +  ES  H  SS
Sbjct: 13  YLRAN--RGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSS 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185
             +   ++R  F W      V +NP  ++  P          T+   +Q           
Sbjct: 71  MARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEAL 130

Query: 186 -----------------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                                         +E  +     E L  +G+R ++     ++ 
Sbjct: 131 QRKNRDISNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRD 190

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF-------------------- 255
           +  +  +++          V       + L                              
Sbjct: 191 VDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEG 250

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
             F+    +++N           A +AGV   S H +R  +AT   D GA   E+    G
Sbjct: 251 ALFLGMRGKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLG 310

Query: 313 WKTVDQAETYTKGA 326
             ++   + YT  +
Sbjct: 311 HSSLKTTQRYTHVS 324


>gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
 gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4]
          Length = 280

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 79/261 (30%), Gaps = 33/261 (12%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQFLTSMRVLFKWAV 148
            +Y   +        +++     I    +            PSS      ++R  F +  
Sbjct: 2   RNYVQPLKEFFSFVKWQQCKEPKIEECRDYLYFLCKRPDLKPSSIRVRFAALRSFFNFFY 61

Query: 149 RQEYVAINPCLSVER-PKRKTEGIRPWT------------------KEDMQQFKSFWSEG 189
           R++ +      S    PK      R  +                  KE  ++ +    + 
Sbjct: 62  REKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKKSRWNEWQW 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKL 244
            + +   E L  +GLR  +      ++   +  ++  +         +            
Sbjct: 122 KRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEVATASLCSY 181

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
           L   P   E  F+++  + +    F +  K     AG+++S   H +R   AT   + GA
Sbjct: 182 LESCPFESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKLRHTFATHLLEGGA 241

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G   +   + YT
Sbjct: 242 DLRSIQELLGHAHLSTTQIYT 262


>gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 392

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 85/347 (24%), Gaps = 28/347 (8%)

Query: 28  GHGRRIRLPYPHESTFI-------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           G   R R   P  +                + G     +     +K+  TL      Y +
Sbjct: 24  GQTHRERRKSPFSAKSASLRWGRERERHLLIHGLATASDDAGPIKKEVPTLAEFAPRYME 83

Query: 81  -SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136
             A       ++  +        +I   GD    +I ++ ++             S    
Sbjct: 84  GYAKANGHKPSTLETKRQVLRLHLIPAFGDKRLDQINSELVQRLKAKLTEHMANKSINNV 143

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  +  + K AV    +   P  +     +          E     K+  ++  +  +  
Sbjct: 144 LGVLNTMLKCAVEWGVLEELPVRAKRMRVKSPSMDFYDFDEYAALVKAAAAQSPECLVFV 203

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPDGFMKLL 245
                +GLR  +        +      +  +               I T+ L       L
Sbjct: 204 LLAGDAGLRAGEIRGLHWAAVDLRRRQLTVEHSEYKGELTTPKYDKIRTIPLTRRLADAL 263

Query: 246 AMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
              P   E          +   +        +     A + +   H +R    +  A  G
Sbjct: 264 GTLPRDCELVLYRGSEGREIPTSRQTGRTMLEKAQDAAKLRRRGPHTLRHTFCSHLAMRG 323

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           A A  +    G  ++   + Y   +            +        P
Sbjct: 324 AAARVIQQLAGHASLVTTQRYMHLSPGATEA--AIALLEQPAPVLKP 368


>gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
 gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341]
          Length = 365

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 103/357 (28%), Gaps = 43/357 (12%)

Query: 11  VTKERTRHGKIIYYFR---------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + +   +  K  Y  +          G  +RI             Y   L         +
Sbjct: 2   IKEYIDKDNKKYYEVKNHYIGKDVFTGKEKRISKKGFRTKREAENYCIKLKSEF---LEV 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKH 118
                +  T + +   + +      +   +   + +       I+        + I    
Sbjct: 59  GFKSNQDYTFQDVYDLFDEQYK-RKVKDTTY--YRNTLHFNKHILPFFACMKVKDIKLVV 115

Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +  +         ++   +     ++  +AV+ E +A N     E P+ K E  +    
Sbjct: 116 CQKFINGLSESFKKATVKHYSILASMILDYAVKLEIIATNYMKYTEIPRMKEETKQDNYY 175

Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------H 216
              +  +       +   +    F  L ++G+RC + C    +                +
Sbjct: 176 TKSELLEFLEVVKNNYSLELYCTFRVLAFTGIRCGELCALTWKDFDLKNKTLSVNKNLTY 235

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           ++      +T+   +   + L +  +++L      +    ++             +    
Sbjct: 236 VKGGYTVSETKTKSSNRIIYLDNETVEVLKQFRKQRSFVPLDTSVFNKKPELLKYYLNGI 295

Query: 277 A-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              K  + + + HG R   AT+  ++G    ++    G   +    + YT   +  +
Sbjct: 296 CAKKPNLKRITLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKK 352


>gi|295407330|ref|ZP_06817128.1| phage integrase [Staphylococcus aureus A8819]
 gi|297246409|ref|ZP_06930251.1| phage integrase [Staphylococcus aureus A8796]
 gi|294967775|gb|EFG43806.1| phage integrase [Staphylococcus aureus A8819]
 gi|297176680|gb|EFH35941.1| phage integrase [Staphylococcus aureus A8796]
          Length = 353

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      +   ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 301

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 86/262 (32%), Gaps = 9/262 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           ++  + K       A N+  S++ Y    ++    +    +I    I + +  +      
Sbjct: 28  ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 87

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           ++ +   +    K               +   +  ++  + ++KE+++          + 
Sbjct: 88  SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 146

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250
           +     +   GLR S+     ++ ++++   I+  ++       V LPD  +  L     
Sbjct: 147 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 206

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
             +      + ++    +     +  K    KA V    S H +R   AT    +G    
Sbjct: 207 AFKPKEYLFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIR 266

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G + +     YT   D
Sbjct: 267 IVKELLGHENIKTTMIYTHITD 288


>gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265]
          Length = 325

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 90/292 (30%), Gaps = 39/292 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT-- 129
            + E+  +     +L+ ++ +++ +   Q         D + +T   IR  +        
Sbjct: 19  FLEEFLFARRGRGNLSEHTVLAYRTDIRQFFSILSPPDDLQLLTAADIRFFMAELIRRGL 78

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P S  + L S+R  F +   +  +  +   ++  P+ +       +  + ++       
Sbjct: 79  QPRSIARKLASVRSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVP 138

Query: 189 GSQPR----------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
            ++ R                 A E L   GLR S+        L+     +K T K   
Sbjct: 139 AARYRKGEAGLLDSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRK 198

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----------FSIWFKAKATKA 280
              V L    +  L      +  FF      ++               + +  +    K 
Sbjct: 199 QRIVPLGLAAVSALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTRKY 258

Query: 281 GVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +  +       H +R   AT   ++GA    +    G   +   E YT  +
Sbjct: 259 LLPVTEQKKKNPHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVS 310


>gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 109/313 (34%), Gaps = 15/313 (4%)

Query: 27  KGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHW 84
             +  R R+  P  + T   A   A       RE    P           + +  K   +
Sbjct: 49  IDNRTRTRILAPVSALTVKAAREKATEQLQAWREEHAQPSMSASPRFDVFVEQTWKPMIF 108

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142
                +++ S       +++   G +    I  K +++  +    T   +A + L +++ 
Sbjct: 109 DHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           +FK A+RQ +   NPC+ + +  ++    R  +  +MQ+      +     GS  + A  
Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADI 227

Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L   +G R S+      ++++ N   +   KTG  +           +      K   
Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   K   + +     +     + G+ +   H +R   A+ +   G +   + +  G K
Sbjct: 286 ELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345

Query: 315 TVDQAETYTKGAD 327
            V     YT   D
Sbjct: 346 KVTMTLRYTHVGD 358


>gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
 gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294]
          Length = 398

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 109/342 (31%), Gaps = 27/342 (7%)

Query: 30  GRRIR--LPYPHESTFIPAYMSALTGSTPKREYIN-------SPRKKPTTLKW-LISEYR 79
           G++I   L     + F       ++      + I           K   TL+   ++ Y 
Sbjct: 53  GKKISKSLGTFSHADFDQNLEKLISQMQRFHQRIAQGLAPFEDEVKPANTLREFALTIYM 112

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQF 136
            SA     +     +       I+   GD+ +  I    +   +   +      +S  + 
Sbjct: 113 PSAEMRKKSYKDDEAKLRM--HILPVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRV 170

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEG 189
              + V+F  A+  + + +NP   V + K   +  R    +++++             + 
Sbjct: 171 RALLSVMFNMAINHDLIQVNPVSKVSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDN 230

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
                  +FLL +G+R  ++       +            K+G    + L    + +L  
Sbjct: 231 LIIVAIVKFLLLTGVRKREAMDMKWTDVDLTTGVWLLGENKSGKARRITLNQDALAILHS 290

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
            P      F N    +         F++    A + N   H +R   A+I+ ++G + + 
Sbjct: 291 LPQQHAFIFANPMTGQPF-NDMRKTFQSIMKAASIRNIRIHDLRHNFASIAVNSGQSLYV 349

Query: 307 LMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
           +    G  +    + Y    +  ++   ++         S  
Sbjct: 350 VQHLLGHASPQTTQRYAHLQSSTLKQASEDVAAAIRAQSSHH 391


>gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083]
 gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 422

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 120/385 (31%), Gaps = 56/385 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68
           +V   R    +         G+   L           Y    + G+ P  E  +  +   
Sbjct: 41  YVFSYRNAANRKR---NITIGKVGTLTPTEARKQAELYRFKIINGNDPLEEKYDPTKSF- 96

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVES-- 125
            T+  LI EY KS  + + A ++R          I    G+     I  + +        
Sbjct: 97  -TVTNLIDEYLKSVAYLNKADSTRYTDICRIDRHIKPLVGNRLVSSIDMRFVEKLFRDIA 155

Query: 126 ----RKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
               ++  PS              +A   +   R +  W  +   V  N   +       
Sbjct: 156 SGKTKRDKPSGKKFGRSTVRGGEGAARSTIRLFRAILSWGEKAALVDHNIVRAARNVDIG 215

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-----------------PRLAFEFLLYSGLRCSDSC 210
            +G R    +D + ++  W    +                    A + ++ +G R  +  
Sbjct: 216 RDGKRETILDDPEAYEQLWHTLDRLSDPDQENENHAPIQQEATDAIKVIMLTGARKGEIT 275

Query: 211 RAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
               + +         +       ++TG    + LP   +++L+   +      +   K+
Sbjct: 276 NLLWEQVDLESGIISIDPHLHKTGRRTGDRRIIGLPQLAIEILSSYSVELRAGLVFKSKR 335

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +    S  ++    +A +  +   HG+R   A+  A  GA+A E+M   G + +   +
Sbjct: 336 SSDVIDLSKIWRRVREEANLPPTLGLHGLRHSLASHMAMDGASASEIMTALGHRDITSTQ 395

Query: 321 TYTK--GADRIRLGIKNSRRISSVV 343
            Y     A R  L      +++  +
Sbjct: 396 RYIHWALASRQSLAENAVSKLTEGI 420


>gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae]
          Length = 302

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
            ++ E+ +        + ++R ++      ++           +++   +RS + +    
Sbjct: 7   AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 66

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     + +++++    WA  +  +A +P   ++ P+          ++   Q  +  
Sbjct: 67  GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 126

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G         + RL  E L  +G+R S+ C   +  +      ++   K     T   
Sbjct: 127 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKS 285
                  L           +  +                    ++  +  A  AG  +  
Sbjct: 187 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            HG+R  +AT   + GA    +    G  ++   + YT  A  R+R+    + 
Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAH 299


>gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
 gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC
 gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC
 gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4]
 gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3]
          Length = 299

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 90/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130
              Y +S     L+ ++  ++     +      +  D   +  +H +  +        +P
Sbjct: 12  FETYMQSE--RQLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S   +L++++   ++ +R   + +NP   +  PK+     +    + +    +      
Sbjct: 70  RSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDP 129

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q +   ++   K      V +    ++ ++
Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAIS 189

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  +    H +R   AT  
Sbjct: 190 AWLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++ A    +    G + +   + YT   D   L 
Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283


>gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245]
 gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245]
          Length = 337

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 84/301 (27%), Gaps = 50/301 (16%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT 129
           I  +        +++ ++  ++ +  DQ         G  D R    + +          
Sbjct: 21  IERFLDYLKSQKNVSSHTLTAYRNDLDQFSIFIASHLGIGDMRNFLPEQLAVVDVRLYMG 80

Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P S  + L +++  +++      +  +    V  PK         T++  ++
Sbjct: 81  YLLKNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYVTTPKYPRTVPGFLTEQQTEK 140

Query: 182 FKSFWSEGS-------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                  GS                   + R   E L   GLR S+     + +L     
Sbjct: 141 LFGEVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSCGLRISELTGLEMHNLSLENG 200

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFS 270
            +K          V L    ++ L      +  FF            +    K     + 
Sbjct: 201 YVKITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLKGDAGALAHVFVTKKGKKIYP 260

Query: 271 IWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +    K     +       H +R   AT   ++GA    +    G  ++   E YT 
Sbjct: 261 MLVQRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTH 320

Query: 325 G 325
            
Sbjct: 321 V 321


>gi|138894424|ref|YP_001124877.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265937|gb|ABO66132.1| DNA integration/recombination/invertion protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 387

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 109/369 (29%), Gaps = 57/369 (15%)

Query: 17  RHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK  Y          +G+RI+                L     + E     +    +L
Sbjct: 7   KRGKNSYRLVYSMGFDANGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSL 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              I  +R +     L+  +  ++ +Y + +II + G      I   H+   + + K   
Sbjct: 67  SDFIQLWRDNYAEKQLSPKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDE 126

Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKE 177
                     + ++   +   ++ +F  AV  +++ +NP     +  +   +G      E
Sbjct: 127 TRLDGKKGSLSEATINYYRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGDVYDENE 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NN 220
                K    E  + RL F   L  GLR  +      + +                    
Sbjct: 187 TRLLLKCLEKEDLKWRLYFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSYTKEKG 246

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA----------------MTPIGKETFFINNDKQKM 264
            F  + +   +   + +P   + LL                          F   + +  
Sbjct: 247 FFLKEPKSKKSKREIAIPSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPH 306

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE--- 320
           + +     ++    +  +     H +R  SATI  + G     +    G  +        
Sbjct: 307 HHSYPRTKWERFLKRNNLRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFY 366

Query: 321 -TYTKGADR 328
              TK ADR
Sbjct: 367 VHRTKEADR 375


>gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 342

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 83/294 (28%), Gaps = 31/294 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFD----YRKITTKHIRS 121
           +   I  +         L+  +  ++         ++    G          +TT  +R+
Sbjct: 24  VGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTADVRA 83

Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
            + +R+     P + ++ L + R   +   R+    +    +V  PK      +P +   
Sbjct: 84  VLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAA 143

Query: 176 ------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQK 228
                               ++       L  +GLR S++     + +  +      T K
Sbjct: 144 ARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGK 203

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281
                 V L     + +A                F       ++     +  +      G
Sbjct: 204 GRKTRMVPLIAPVRRSIAEYRAICPHALGPEGPLFRGTRGGPLSPRIVQLAVERMRGALG 263

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           + +  + H +R   AT     G     +    G  ++   + YT+      +  
Sbjct: 264 LPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAA 317


>gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 300

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 6/234 (2%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R   +SR+ TP++A   L ++R LF WAV  +    +P   V+R +  ++G   W+  +
Sbjct: 1   MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++    G++ RLA   LLY+  R  D  R G +H+          K      V + 
Sbjct: 61  VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120

Query: 239 DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                     + ++ P    +F   +  +  +   F   FK    +A +   SAHG RK 
Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +A   A+ GAT H++MA  G +T+++ E YT+ A R RL       +     SD
Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 234


>gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 476

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 116/384 (30%), Gaps = 50/384 (13%)

Query: 14  ERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++ ++G+     RK              + + +     +       S L          +
Sbjct: 6   KKRKNGEGTLRLRKDGRWEGRIVVGYSEKSLPITKCVTAKTKTECSSKLEALKEPYGRSS 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
              K        I  + ++    +L + +R  +E   ++ II + G     +++   ++ 
Sbjct: 66  DRIKADMPFGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKILLNRLSQSDLQQ 125

Query: 122 GVES--------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                             +  +  +      + R   + AV++  +  NP +  +   +K
Sbjct: 126 FYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLLPKK 185

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              ++  T+ ++ +F     E     L F   L +G+R  +        L      ++ +
Sbjct: 186 AREMQVLTQNEIIRFLHQAKEEGCYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIE 244

Query: 228 KTGTIITVELPDGF--------------------MKLLAMTPIGKETFFINNDKQKMNAT 267
           +   II  E+                        +                ++ +  N +
Sbjct: 245 RQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPS 304

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                 +    +AG  K   H +R   AT++ + G     L AT G  +     + Y+  
Sbjct: 305 SVRKRLQLILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364

Query: 326 AD-RIRLGIKNSRRISSVVDSDDP 348
            D   R    +  R     D+  P
Sbjct: 365 TDTMQRQAAVHIDRKIGGTDAQMP 388


>gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 356

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 57/304 (18%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR------- 126
           Y +       + N+   +     Q +    ++    ++ +I     RS +          
Sbjct: 36  YYEEVIL-GKSFNTIRGYRRDLLQFMEYLDEYEKIHNFEEIEMMTFRSFIAYLNSPKRLM 94

Query: 127 -----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
                                          +  S  + ++++R  FK+      +  N 
Sbjct: 95  ENDKNKTENSENLKSIKNLKKCKKKAKPKPVSRRSINRKISALRTFFKYLQEINVIETNK 154

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAG 213
              +  PK + E      ++D+ + +   +     G + RL  E L  SGLR  +     
Sbjct: 155 ASYISMPKFEKELPNVLNRDDLNKLRHVINTEKITGIRDRLIIELLYSSGLRSIELINLS 214

Query: 214 VQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QK 263
              +      I+              +   K L      K+  + N  +         +K
Sbjct: 215 EFMIDIEEREIRVIGKGEKERVTFFSENAKKWLIKYIDEKKKQYENYTREVLIVNSKGKK 274

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +              +AG+ K  + H  R   A    + G     L    G  ++   + 
Sbjct: 275 LTTRSLRRLISGHVHEAGIEKEITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQV 334

Query: 322 YTKG 325
           YT  
Sbjct: 335 YTHV 338


>gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
 gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens E str. JGS1987]
          Length = 368

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 108/347 (31%), Gaps = 36/347 (10%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G        G+     +RIR+      T   A       S+        P+ K   LK 
Sbjct: 9   KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127
            I ++  +    S+ +N+R ++ S  +  II   G++   ++ T  I++           
Sbjct: 69  FILDWFYNHKVLSIGINTRNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNP 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSSA + + ++    K+A + + +   P    +    +   I  W+K+ +  F +   
Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +           +G+R  + C      +      +   +              + L  
Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFGRGYLNITRQVIADKSTNTLVCTENLKT 246

Query: 248 TPIGKETFFIN--------------------NDKQKMNATQFSIWFKAKATKAGVNK--- 284
           T   +                           + +  N    S+ F  K  K        
Sbjct: 247 TKSDRTISIPKVLLKEFEKNLKAPNDFIVLSRENEMCNPRNISMDFTKKVNKYKDKLPQI 306

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           S HG+R   AT+    G     +    G   +     TYT   + ++
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353


>gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi
           35000HP]
 gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC
 gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP]
          Length = 304

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127
              Y         ++ ++  +++     I                    + I +    + 
Sbjct: 12  AQAYWDFLRIEKQVSPHTLTNYQRQLLAISEMLIAAQIDDWQAVDASVVRWILTQSHKQG 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
               S    L  +R  F + V++ YV +NP + ++ PK      +    E M Q      
Sbjct: 72  LGAKSIGLRLVVLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQLLDVEV 131

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------TQKTGTIITVE 236
                 +     E +  SGLR ++  R  +  +      ++                 + 
Sbjct: 132 DEPADIRDLAMMELMYSSGLRLAELQRLDLGDMDLIDAEVRLLGKGNKERIVPIGSRALT 191

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               ++ +           F+N    +++     +  +    + G+      H +R   A
Sbjct: 192 ALQAWLTVRPSFNPQDNALFLNKRGGRLSHRSIQLAMQKWGERQGLATRLHPHKLRHSFA 251

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           T   +A      +    G  ++   + YT   D   L 
Sbjct: 252 THLLEASTDLRAVQELLGHSSLSTTQIYTH-LDFQHLA 288


>gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 296

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 92/264 (34%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
            + + ++ +++E              G+ D  K+    IR+ + S      +  S  + +
Sbjct: 14  KNYSKHTVLAYEKDVTSFFVFLENNYGERDPVKVAYAQIRAWIISLVDAGLSSQSVNRKV 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQP 192
           +S++  +K+ ++   + ++P +  +  K       P++++++                + 
Sbjct: 74  SSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKEVAIVLEELRESQDFTSLRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
            L  E L  +G+R ++     +  +  +        K      + L  G +  L    + 
Sbjct: 134 LLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVKGKRDKERFIPLLPGVITTLERYVVE 193

Query: 252 KETFFINNDKQK---------MNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADA 300
           +     + + +          + +T          ++A      S H +R   AT   + 
Sbjct: 194 RAQVAQSGNSEPLLVTLKGLKVYSTLVYRIINRYFSEASDKFKTSPHILRHSFATHLLNQ 253

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA  + +    G  ++   + YT 
Sbjct: 254 GADLNVVKELLGHASLASTQVYTH 277


>gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 84/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        A N+  S+E   D +     +                 S +     
Sbjct: 9   VESFLEMMSAERGAAANTLQSYERDLDDVRSFLTERSIRLTEAASADLAAYLSSLAREGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L +MR  +K+   +     +P   ++ PK+     +    E++ +  S    
Sbjct: 69  KPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGRLLSQAEA 128

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
            ++                E L  +G+R S+      + L       +   K      V 
Sbjct: 129 EAEDTAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           L    +  L                       F   + +  +    F+   K  A +AG+
Sbjct: 189 LSHSAISALKSYGRLLAAENAAVKERQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
 gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17]
          Length = 303

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 71/274 (25%), Gaps = 26/274 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            + L   Y         +  +   +     Q+          +++T  ++          
Sbjct: 9   FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCP-DQLSTDQLQQYFMHLVEHR 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S       +++  +++ + + +  +    + +    +             +     + 
Sbjct: 68  SWSLVKIARNALQSFYQYVLGKPWEYVPIVKAPKVQTLQDVL-----SLKEVERLISRTR 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               ++ F      GLR S+S    +  +        ++  K      V LP   +K L 
Sbjct: 123 KLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALR 182

Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNKS--AHGVR 290
                     +                    M         K  A   G+ K    H +R
Sbjct: 183 RYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + G     +    G  +      YT+
Sbjct: 243 HSFATHLLENGVNLRSIQTLLGHASPVTTARYTR 276


>gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
 gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424]
          Length = 273

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 13/264 (4%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R    T   +I  +         +  + IS++ +  Q +   G    R +T   +   V 
Sbjct: 6   RATSDT--EIIILWLN-----GKSKTTVISYQCHVKQFLEFVG-KPLRDVTLDDLSLWVN 57

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               T  P +    + +++ LF +A R  Y+ +N    ++ PK K             + 
Sbjct: 58  RLNLTYQPVTVANKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILDPSEVKR 117

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               +   +  +    +   GLR S+ C      L+N   +    K      V +P    
Sbjct: 118 LINAAPNERDSVLLSLMYGCGLRVSEVCGLNWSDLKNGKAT-VFGKGAKTRIVIIPPNLW 176

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
             L   P   E  F++    ++  T      K     +GV    S+H +R   A+ + +A
Sbjct: 177 DRLMKLPRDGEAVFMSRRGNRLERTYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEA 236

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L  + G   ++  E Y  
Sbjct: 237 GCNLRLLQQSLGHSKLETTEKYLH 260


>gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
 gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100]
          Length = 292

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 85/267 (31%), Gaps = 22/267 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I  + +  +    + N+ +++    +  +           T       ++  K +  S 
Sbjct: 6   WIDFFDELQNVRGRSQNTVMAYRRDLELYLEYRKTGK----TVPGFYEFMKKNKLSTRSQ 61

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + ++S+R  FK+      +       +  PK K    +  T ++ QQ            
Sbjct: 62  ARVISSLRTYFKFC-ETRGMKCPELRELRPPKVKVGLPKVLTPQEFQQLFDAAEVPDAVK 120

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             + +L   FL   G R S+     V    Q + +     K      V L +   + L +
Sbjct: 121 TARNQLTLLFLYGLGCRVSELIGLNVVDFNQTDRWIKVLGKGNKERLVPLTEKLAENLTV 180

Query: 248 TPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                             IN+   + +      W  A + +AG     + H  R   AT 
Sbjct: 181 YLKEHRMALVKENSPSILINDRGHRPSRVDVWRWLAAWSARAGFAEPVNPHRFRHGCATA 240

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
             ++GA    +    G  ++   + YT
Sbjct: 241 LLESGADLRSIQMLLGHASIQTTQIYT 267


>gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046]
          Length = 313

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 82/290 (28%), Gaps = 40/290 (13%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI-------------- 119
           Y  +      +  +R  +E      +R       D    ++ T  I              
Sbjct: 13  YLTTI--TGKSQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLE 70

Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172
                       R ++ S+  + + +++  FK+   ++  +  NP   +E PK       
Sbjct: 71  DLYLFMEYCEVQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPV 130

Query: 173 PWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                + + F       S   +      F L  G+R S+ C   +  +   + ++  +  
Sbjct: 131 YLNYNEAKDFIGAVQTQSYSARDECMMVFFLNLGIRVSELCSLNIDSINGRMLTVIGKGN 190

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282
                         L               +   ++        ++ A    V       
Sbjct: 191 KERHVYLNDACMNALDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSHS 250

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                + H +R  SAT+   +GA    L    G  +V   + YT   D  
Sbjct: 251 PKEKLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQ 300


>gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
 gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B]
          Length = 326

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 96/300 (32%), Gaps = 47/300 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITT 116
           L   +  Y  S+     + N+   +       +R                   D  K+  
Sbjct: 7   LDDFLD-YLSSS--KGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDKVDE 63

Query: 117 ------------KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163
                        +I    + RK +  S  + ++++R  F +   + + + INP  SV+ 
Sbjct: 64  DLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDL 123

Query: 164 PKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK +         +                   ++        L  G+R S+  +  +  
Sbjct: 124 PKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISS 183

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSI 271
           +++ +      K      + L +  +  +    + +        FI+  K++M+      
Sbjct: 184 IKDEMIR-VLGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMSNRSIQH 242

Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
             +     +G++    + H +R  +AT+    G A    L    G +++   + YT   D
Sbjct: 243 MIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVND 302


>gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
 gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393]
          Length = 296

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 21/271 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH-- 128
           + +Y         ++ ++  +++    +   I++ +G   ++++T   +R  +       
Sbjct: 5   LQKYLTYLRIERQVSPHTLTNYQHQLVRVIAILQDAGIQQWQQVTLSVVRYVLAQSSKQD 64

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V Q  + +NP + V  PK+     +   ++ +Q   +  
Sbjct: 65  GLKEKSLALRLSALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQLLLAND 124

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
                  + R   E    SGLR S+     +  +   +  ++          V L     
Sbjct: 125 SKEPIDIRDRAMIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGNKERIVPLGRYAS 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
             +              +  F++    +M+     +  +    + G+  + + H +R   
Sbjct: 185 HAIQQWLKVRLLFNPKDDALFVSQLGNRMSTRTIQMRLERWGIRQGLNSHLNPHKLRHSF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 245 ATHMLEASSDLRAVQELLGHSHLSTTQIYTH 275


>gi|257428815|ref|ZP_05605210.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257434137|ref|ZP_05610488.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282914862|ref|ZP_06322643.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282925359|ref|ZP_06333015.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|293507876|ref|ZP_06667718.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510848|ref|ZP_06669548.1| integrase [Staphylococcus aureus subsp. aureus M809]
 gi|293545448|ref|ZP_06672124.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|296277052|ref|ZP_06859559.1| phage integrase [Staphylococcus aureus subsp. aureus MR1]
 gi|257274459|gb|EEV05971.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257281063|gb|EEV11207.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|282312993|gb|EFB43393.1| phage integrase [Staphylococcus aureus subsp. aureus C101]
 gi|282321256|gb|EFB51586.1| integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290919759|gb|EFD96831.1| integrase [Staphylococcus aureus subsp. aureus M1015]
 gi|291094939|gb|EFE25207.1| phage integrase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466320|gb|EFF08846.1| integrase [Staphylococcus aureus subsp. aureus M809]
          Length = 345

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2]
          Length = 313

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 81/293 (27%), Gaps = 31/293 (10%)

Query: 70  TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126
           TL   +  +         LA  +   +     ++   +     + R     H+R  +   
Sbjct: 4   TLPDDVQRWLDHLGVERRLAPRTLALYRDALGRLAASAAADGVELRAAQPHHVRRWMAQL 63

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +     P S    L++ R L++W  R+  V  NP   ++ PK      +    +      
Sbjct: 64  RTAGLAPRSIALVLSAWRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALA 123

Query: 184 SFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQ-------HLQNNIFSIKTQKTG 230
              +E    RLA             GLR  +     +         +     S      G
Sbjct: 124 EHENEDGDARLAARDHAIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDASAHVLGKG 183

Query: 231 TIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAG 281
                              +              F++   ++++        K  A +AG
Sbjct: 184 RKRRSVPVGAKALEALAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARLKQIALQAG 243

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +      H +R   A+    +      +    G  ++   + YT   D   L 
Sbjct: 244 LPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYT-QLDFQHLA 295


>gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 344

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121
           ++  ++ +          A N+  ++E    Q +      D           +T    RS
Sbjct: 41  VRDAVAGWLAYLRDAHRYADNTLEAYERDSRQFLAHLAGKDARPVTLARLNALTPHDFRS 100

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  R+       S  + L+++R LF+   R   +     L+V  PK      +P T+  
Sbjct: 101 FLADRRDDGAQSRSLSRTLSALRSLFRTLERTGALQNRSILAVALPKLPPRLPKPVTEAK 160

Query: 179 MQQFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKT 226
            ++                 G++ +     L  SGLR S++         L         
Sbjct: 161 AKEVVDEAALDGELSAHPWTGARNQAVLLLLYGSGLRISEALGLNRKDAPLGPRDVLRIR 220

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATK 279
            K G      +       +A                       ++N     +      T 
Sbjct: 221 GKGGRERLAPVLPVAQTAIADYIEQCPHKLEPQGPLFVGVKGGRLNPRIVQLLLARLRTN 280

Query: 280 AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +  +   H +R   AT     GA    +    G  ++   + YT   DR RL
Sbjct: 281 LALPATATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYT-AVDRDRL 333


>gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans
           CH34]
 gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 106/331 (32%), Gaps = 44/331 (13%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
            T  PA   A             P   P  +++L  ++  ++    LA ++  S+     
Sbjct: 2   RTRQPARNRAHAVDEADEASAEKPAPDPLVVRYL--DWLATS--RKLAAHTLTSYGHDLS 57

Query: 101 QI----IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEY- 152
            +    IR +       + T+HIRS          +  +  + L++ R  + WA R  + 
Sbjct: 58  VLQSQAIRLAPGVALLALETRHIRSFAARLHGNGLSARTIARTLSAWRGFYLWAARHGHG 117

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208
           V  NP   V  PKR     +  + E      +   + +    + +  FE    SGLR S+
Sbjct: 118 VQSNPVDGVRAPKRGRPLPKALSVEHAVALVAHRQDDTNESLRDQAVFELFYSSGLRLSE 177

Query: 209 SCRAGVQHLQNNIFSIKTQKT------------GTIITVELPDGFMKLLAMTPIGKETFF 256
             +  V++ ++  +                       TV +    ++ L      +E   
Sbjct: 178 LIQLDVRYTEDGDYRSSGWLDLDGAEVTVLGKGSRRRTVPVGSKAIQALKAWIHVREMML 237

Query: 257 IN-------------NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301
                             +++  +      K +A  AGV      H +R   AT    + 
Sbjct: 238 RPGALPEDAHALFLGTRGRRLPISTVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSS 297

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                +    G  ++   + YT   D   L 
Sbjct: 298 GDLRAVQEMLGHASISTTQIYT-SLDFQHLA 327


>gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 291

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%)

Query: 90  NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144
           N+  ++    D  +            +    +R+ +   E+R    SSA + L+ +R   
Sbjct: 11  NTLSAYRRDLDDYLGYLARSGTALGDVDAGTLRAFLIDLETRGLKASSAARRLSCVRGFH 70

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSEGSQPRLAF 196
           K+   +     +P ++V  P+R     +  +  ++ +  +            G   R   
Sbjct: 71  KFLYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAAAGADQPPGPARRARR 130

Query: 197 EFLLY-----SGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248
              L      +GLR S+              + I   K G    V L +     +A    
Sbjct: 131 MVCLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLVPLTEAARAAMAAHLP 190

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                    F  ++D   +    F+   K  A  AG++    S H +R   A+     GA
Sbjct: 191 AVPEDSPWLFPADSDSGYLTRQAFARDLKVLAAAAGLHPDRVSPHVLRHAFASHLLQNGA 250

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               +    G   +   + YT   D     +
Sbjct: 251 DLRIVQELLGHADISTTQIYTHVLDERLKAM 281


>gi|254450597|ref|ZP_05064034.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265003|gb|EDY89273.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 358

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 28  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 87

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+          
Sbjct: 88  IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 146 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 204

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +  +   +   K G    + +     ++L
Sbjct: 205 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 264

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 265 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 315

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 316 IVGRLLNHTPLSITGQRYTR 335


>gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
 gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M]
          Length = 336

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 6   KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 54

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 55  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 115 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 173

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 174 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 232

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +       H  R  +AT    AG 
Sbjct: 233 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 292

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+  +      +        I+ 
Sbjct: 293 SERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 324


>gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 322

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKH 128
            LI  +  +      +  +   +ES     + K  D D  KITT  +R       E    
Sbjct: 46  DLIQLFLAAKRVEGCSNKTVHYYESTIRNAVEKI-DKDVVKITTDDLRMFLDGYQEENNI 104

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +       +   F W   ++Y+  +    + + K        +T E ++  +    +
Sbjct: 105 SKVTVDNIRRILSSFFAWLEDEDYIVKSSVRRIHKVKTCKTVKETYTDEALEIMRD-ECD 163

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247
           G +     + L  +G+R  +  +     +           K      V         L  
Sbjct: 164 GLRDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNKQRRVYFDARTKLHLQK 223

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +E               ++  +   I  +    K  ++K   H  R+  AT + D 
Sbjct: 224 YLNSREDSNEALFVSLQKPYNRLLISGVEIRLRNLGEKLNLHKVHPHKFRRTLATTAIDK 283

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G +++D    Y 
Sbjct: 284 GMPIEQVQQLLGHQSIDTTLQYA 306


>gi|314947728|ref|ZP_07851135.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
 gi|313645708|gb|EFS10288.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0082]
          Length = 393

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 17  ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +QI+   G      I+  + +  V+
Sbjct: 77  APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375

Query: 327 DRI 329
           +  
Sbjct: 376 NNA 378


>gi|241664436|ref|YP_002982796.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240866463|gb|ACS64124.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 351

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 107/346 (30%), Gaps = 25/346 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  Y++    +  T+   
Sbjct: 6   KTPSGTWKAVIRKIGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRGPSEKLTVAGA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +          ++ S       +    G +    ++   +    + R     S  
Sbjct: 65  LRRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDVRLAAGKSNN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A+++  +    NP  ++ +P   T   R  + ++  +  +  S  
Sbjct: 124 TVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGTGRDRRLSLDEQARLFAAVSAH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245
           S P L +   L   +G+R S+        +     + +++  K G+   V L      +L
Sbjct: 184 SNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTKNGSARVVPLTRAAADVL 243

Query: 246 AMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
            +               F       K     F   + +     G+ +   H +R  + + 
Sbjct: 244 RLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRDIGLADLHFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +AG +  E+ A  G K++   + YT              ++ +V
Sbjct: 304 LVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVEKLDAV 344


>gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 336

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 89/316 (28%), Gaps = 38/316 (12%)

Query: 53  GSTPKREYINSPRKKPTTLKWL------ISEYRKSAH-WGSLAVNSRISFESY----FDQ 101
              P+      P   P             + + ++       + ++  ++          
Sbjct: 10  RKAPRPATEARPLPGPAFFSAAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRF 69

Query: 102 IIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVA 154
           +    G          +    +R+ +  R++      S ++ L ++R   ++  ++    
Sbjct: 70  LTEHLGAKPDAAALSAMQPADLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLAR 129

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLR 205
            +   +V  PKR     +  T  D +          + R              L   GLR
Sbjct: 130 TDVFGAVRAPKRPHSLPKALTVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLR 189

Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FI 257
            S++         +        T K G   T+ + +   + +                F+
Sbjct: 190 ISEALSIQRADAPIGRTDRVTITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGGPLFV 249

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++     +  +      G+    + H +R   AT     G     +    G  +
Sbjct: 250 GARGGPLSPRIVQLAIQRLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHAS 309

Query: 316 VDQAETYTKGADRIRL 331
           +   + YT   D+ RL
Sbjct: 310 LSTTQIYT-AVDKKRL 324


>gi|314938400|ref|ZP_07845691.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942325|ref|ZP_07849173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951459|ref|ZP_07854509.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314993130|ref|ZP_07858516.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314996013|ref|ZP_07861091.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313589767|gb|EFR68612.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592370|gb|EFR71215.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596416|gb|EFR75261.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598942|gb|EFR77787.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642298|gb|EFS06878.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|315579058|gb|EFU91249.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0630]
          Length = 393

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 17  ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +QI+   G      I+  + +  V+
Sbjct: 77  APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 135

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375

Query: 327 DRI 329
           +  
Sbjct: 376 NNA 378


>gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 291

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 92/270 (34%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128
           + ++          ++N+  S+               G      +  K IR+ V      
Sbjct: 2   VEKFLDYITIEKRYSLNTLASYSRDLQDFSDFVKETEGVDTLISVDKKVIRNFVVYLSEN 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKS 184
             +  +  + L+++R  + + V+   ++ +P  +V   K   E   P+++++M+  Q   
Sbjct: 62  NLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLL 121

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
              +    +L  E L  +G+R S+ CR  ++ +      I+       +  + + +   +
Sbjct: 122 NEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNKMREIPISENIKR 181

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATK--AGVNKSAHGVRKFS 293
            L +    +      N                          +   +   KS H +R   
Sbjct: 182 ELKLYLEKERKPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT   + GA   ++    G  ++   + YT
Sbjct: 242 ATHVLENGAEIAQVKEILGHASLASTQVYT 271


>gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
 gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453]
          Length = 347

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 26/348 (7%)

Query: 1   MTPSLRLPPFVT--KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55
           M     LP  +   K + ++GKI+ Y+      +G+R+ +           Y  A+    
Sbjct: 1   MKAPNNLPSGMRARKRQRKNGKIVIYYFGEVSQNGKRVEISLGT------EYFVAVKKWA 54

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYR 112
                  SP  +  T      +Y          VN+    ++    +        D    
Sbjct: 55  EINIEKISP-SQSITFSQAADKYFSEVIEPKGKVNTINGVKNSIKSLKTFFSTPKDAPLH 113

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +IT +H+   +  R   PSSA   +     +F+ A +  Y+       V+  K+     R
Sbjct: 114 EITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKNKIEKR 173

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                D      +     Q R   +  L +G R  D C      + + I +IK  KT   
Sbjct: 174 DNYINDKLFDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILNIKQVKTSAR 233

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----------GV 282
           +  E+     +++          F+N   + +N    + WF     +             
Sbjct: 234 LRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQERPELEEELR 293

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           N     +R  +AT +              G  + +    Y +     +
Sbjct: 294 NFQFRDLRAKAATDAYLQN-DKETARELLGHTSTNMTNRYIRQVKVQK 340


>gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
 gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus
           F65185]
          Length = 369

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 119/367 (32%), Gaps = 43/367 (11%)

Query: 15  RTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R  K       G     G+R +  +    T   A  + +     +            T
Sbjct: 6   RKRGNKYCIVVDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVT 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           LK  ++ + +     S+  ++ + + ++ +  +I   G     K+   HI+   ++    
Sbjct: 65  LKEYLNHWLE-IKSMSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDK 123

Query: 130 PSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +    L     ++     AV+Q  ++ NP    E PK++   I+ WT++++++F    
Sbjct: 124 GIANNSILLMHRILKSALNLAVKQNIISRNPAAFAEIPKKERTSIQTWTEDEVKKFLLHS 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTI 232
            E S+  + +   + +G+R  +      Q +     ++   +                + 
Sbjct: 184 QE-SRYHIGYLLAITTGMRMGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSK 242

Query: 233 ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            T+ +P   ++ L                  + ++    N   + +    F   F     
Sbjct: 243 RTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSFIRMTH 302

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           K G+     H +R   AT+    G     +    G   +      Y+       +  +  
Sbjct: 303 KVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAV 360

Query: 337 RRISSVV 343
           +     +
Sbjct: 361 KNFGKSI 367


>gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016]
 gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 293

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125
           LK  +++Y+K       +  +   + ++  ++     +        + IT  ++   ++S
Sbjct: 10  LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 69

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       +S  +    +R  + +  R+E V  N  L++E  K K +     TK ++   
Sbjct: 70  QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEVIV- 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG 240
                E    +     + ++G+R S+     ++ +        I   K      + + D 
Sbjct: 129 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 188

Query: 241 FMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             K+L      +     +N         +++    +        + G  K  SAH +R  
Sbjct: 189 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            A+          ++    G   +     YT  + + +R  +   
Sbjct: 249 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVNVI 293


>gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 337

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 89/311 (28%), Gaps = 44/311 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----------- 119
           L   I ++         +  +   +        R        ++  + I           
Sbjct: 27  LPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHA 86

Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                        ++ PS   + L++++ LF + +      +NP  +VERPKR       
Sbjct: 87  GAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVY 146

Query: 174 WTKEDMQQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            T+ +   F                 +    ++  L  + L  +G+R S+        + 
Sbjct: 147 LTESEWLDFSTLVRSNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDIN 206

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKA 275
               +I+          + +    + LL+           F N   Q++         K 
Sbjct: 207 LETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHTSSEGAVFQNEKGQRIAVRTVQHMLKG 266

Query: 276 KATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +             + H +R   A+  A  G     +    G ++V   + Y    D
Sbjct: 267 HIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGD 326

Query: 328 -RIRLGIKNSR 337
            R +  I   +
Sbjct: 327 ERKKHAISGLQ 337


>gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 331

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 85/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           + L++ +  +      +  +   +++   +++    D    +ITT  +R       E  +
Sbjct: 54  EELLTMFTAAKKVEGCSERTLNYYQTTLLKVLGSF-DKHITRITTDDLRKYLSEYQEEHR 112

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+       +   F W   + Y+  +P   + + K        +T E ++Q +   +
Sbjct: 113 CSKSNIDNIRRILSSFFAWLEEENYILKSPVRRIHKIKTAKVVKETYTDEALEQMRDNCT 172

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246
             S+     + L  +G+R  +  R     +       I   K      V         L 
Sbjct: 173 -NSRDLAMIDLLASTGMRVGELVRLNRSDVDFESRECIVFGKGSKERPVYFDARTKIHLK 231

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +                +++ +   I  +    K G+ K   H  R+  AT + D
Sbjct: 232 NYLDSRIDDNPALFVSLQKPHNRLHISGVEIRLRDMGKKLGIPKVHPHKFRRTLATRAID 291

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 292 KGMPIEQVQQLLGHSKIDTTMEYA 315


>gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 306

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 76/281 (27%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---- 122
           LK+ I E+ +   + +L   +   +E                 +   +   HI++     
Sbjct: 3   LKFAIQEFLEDRKFKNLTEITVKGYERSLKAFHDYIIQQHQILNIEDVRPYHIKAYLSYR 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWT 175
            +  K+   +    + +++  F + V++  +  NP     +               +   
Sbjct: 63  KKELKNNAETINHEIRNLKAFFNYFVKERVINENPVTVPVQKTDTKIETFTDYHIRQMLR 122

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT 234
               Q+ +       +  +    LL +G+R  + C    + +           K     T
Sbjct: 123 YYRKQKQRGDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQRT 182

Query: 235 VELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKATKAG 281
           + L D   K L                              + +   F    K       
Sbjct: 183 IPLTDNLKKELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNFRD 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V  S H  R   A     +G     L    G  T++    Y
Sbjct: 243 VRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKY 283


>gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 308

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 82/267 (30%), Gaps = 22/267 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
              + ++  ++ S                    +         ++ +    SS  +    
Sbjct: 33  RGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEENELTLFLRELQRQGLAASSVQRRAAC 92

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           +R   ++   Q   A +    +  P R     +  T+ ++ +             + R  
Sbjct: 93  LRSFLRFLQEQGEPAASR-EPLSLPDRPAPLPQILTEGEVGRLLETCDGSASLDLRDRAL 151

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
           FE +   GLR S++C   ++ +     +++ Q        V L     K +         
Sbjct: 152 FELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKTRIVPLLGEVRKAVERYLAAGRG 211

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303
             P   E   ++ +++ +         + +  +AG+       H +R   AT     G  
Sbjct: 212 EAPGDPEALLLSRNRRPLRREDLWRIVRRRGVQAGIPSSRLHPHILRHSFATHLLRHGMD 271

Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330
              L +  G  ++   E YT     +R
Sbjct: 272 LRTLQSLLGHASLGTTEKYTHFDQELR 298


>gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 369

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 115/368 (31%), Gaps = 48/368 (13%)

Query: 17  RHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + G               G  R+      +      A ++       +  +I   +    
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYNTKKEAQADVAKKITELNEGTFIEPSK---V 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TLK  ++ + +     S+  ++   + ++ +  +I   G     K+   HI+   +S   
Sbjct: 64  TLKDYLNHWLE-IKSMSIEESTFACYRAFINQHVIPSIGMITLHKLNVMHIQKCYKSSID 122

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F   
Sbjct: 123 KGITNNSILLMHRILKSSLNLAVKQNVLSRNPAAFAEIPKKEKTSIQTWTEEEVKKFLLH 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGT 231
             E S+  + +   + +G+R  +      Q +     ++   +                +
Sbjct: 183 SQE-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFEKHTVTINQTSGHNNKIKKTAKTNSS 241

Query: 232 IITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKA 277
             T+ +P   ++ L    I                     N     +    F   F    
Sbjct: 242 KRTIPVPKETIESLKKHKITINKEKLRLGSAYQDLELINCNEFGMVIKRATFRNHFIRTT 301

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
             AG+     H +R   ATI    G  A  +    G   +      Y+       +  + 
Sbjct: 302 HNAGIKEIKFHDLRHTHATILLKQGVNAKIISERLGHTDISMTLNVYSHVLPN--MQEEA 359

Query: 336 SRRISSVV 343
            +     +
Sbjct: 360 VKNFGKSI 367


>gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134]
 gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134]
          Length = 339

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 95/317 (29%), Gaps = 44/317 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           ++  Y         LA ++  S+            + +       + T+HIR+       
Sbjct: 14  IVQRYLAWLEGSRKLAGHTISSYRRDLTVLQAHAAKHAPGIALLALQTRHIRAFAARMHG 73

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                +S  + L++ R  + WA +    V  NP   V  P+      +  + E     + 
Sbjct: 74  EGLAGTSIARTLSAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVALVS 133

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
                 +   + +  +E    SGLR ++  +  V++ + + +                  
Sbjct: 134 HPAGTDAAALRDQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGAELTVTGK 193

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWFKA 275
                TV +    M+ L      +E                      +++     +  K 
Sbjct: 194 GSRRRTVPVGSKAMEALRAWLGVREQLLRPGAAPEDASALFLGARGHRLSMRVVQMRLKQ 253

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG- 332
           +A +AGV      H +R   AT    +      +    G  ++   + YT   D   L  
Sbjct: 254 QAIRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYT-SLDFQHLAK 312

Query: 333 --IKNSRRISSVVDSDD 347
              K   R      S D
Sbjct: 313 VYDKAHPRAGRAAPSKD 329


>gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
 gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein
           [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 87/305 (28%), Gaps = 37/305 (12%)

Query: 72  KWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128
                 + +       A  N+  ++                D    T + + +       
Sbjct: 6   AAWTEAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRDLSDATAEDVEAYFADLGA 65

Query: 129 TPSSAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              SA             +++ + + +   +P   VE PK+     +  ++E+M +  + 
Sbjct: 66  RGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREEMDRLIAA 125

Query: 186 W------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
                  S   +     E    SGLR S+     +  L  +    I   K G      L 
Sbjct: 126 AGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKERLAPLN 185

Query: 239 DGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
           +     +                     F       ++   +F+      A  AG++   
Sbjct: 186 EPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFAQLLDEAAADAGIDPGR 245

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H +R   AT   + GA    +    G   +   + YT  A           R+S VV
Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVAS---------DRLSEVV 296

Query: 344 DSDDP 348
            S  P
Sbjct: 297 RSKHP 301


>gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b]
 gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b]
          Length = 313

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 81/297 (27%), Gaps = 36/297 (12%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
                L+ +S  ++        +        D           +   E +  +P++  + 
Sbjct: 14  REQLGLSEHSLRAYRQDLAAFAKFKQKAKLNDPPLAADIIDFQKDLREEQGVSPATIRRR 73

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------------------EGIRPWTKE 177
           L ++R  + W    +    +P   +    R                     + I      
Sbjct: 74  LVTLRSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVDRPTLGAVFRSAQHIVQLDPS 133

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQK 228
           D               L    L+ +GLR  +     V           ++      +T  
Sbjct: 134 DELSVPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDVSGAATQIRVRGKGDRERTVY 193

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                       F +        +   F N+   ++    F    +  +    +  + + 
Sbjct: 194 VANDRLQTDFKRFWEDRCDAAGSQAWLFTNSMGDRLTPQAFRKRLRTLSKSLRIEPHLTP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSV 342
           H  R  +AT+  + G     +    G  ++   E YTK +D  +   +  +  ++ V
Sbjct: 254 HRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSLSSAVSAADTLAKV 310


>gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003]
          Length = 344

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 20/323 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y R    R   LP  H   F+ A+ +A    T              TL   I   + S  
Sbjct: 4   YHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTLAAAIRAEKTSRP 62

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           +  L+   +      FD +    G    + + ++HI + ++    +  +A + L + R +
Sbjct: 63  FAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLDKL--SADAANKRLKAWRRV 120

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              A R+  +  +P + V R K KTEG   WT+++++QF++ W  G+  R  FE + ++G
Sbjct: 121 MGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTG 180

Query: 204 LRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            R +D+ R G  ++ +                +                 +     LA  
Sbjct: 181 ARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACL 240

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G      N   +  +           A  AGV KSAHG+RK+  T  A+AG +AH +M
Sbjct: 241 SGGFTFLEANGRVR--SVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIM 298

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
           A  G +T+ +AE YT+ ADR RL
Sbjct: 299 AWGGHQTLVEAEHYTRAADRRRL 321


>gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 330

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 49/305 (16%)

Query: 70  TLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD-----YRKITT 116
           TL     + E+ +        + ++  ++     Q          G+         +I  
Sbjct: 10  TLSEYYALGEFVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGEKAADPGLVTRIDM 69

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE------- 169
           +     +  +   P S  + L S++  + + +    + ++    V  P+           
Sbjct: 70  RLFLGFLLKKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVTPRFSKTVPGFLNE 129

Query: 170 ------------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                         +  +              S+ R   E L   GLR S+      + +
Sbjct: 130 EQTETLFDHILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQV 189

Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------------Q 262
                 +K          + L    ++ L      K  FF                    
Sbjct: 190 NIEQGFMKINGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGI 249

Query: 263 KMNATQFSIWFKAKATKA-GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +         K   +    +  K+ H +R   AT   + GA    +    G   +   E
Sbjct: 250 GIYPVLVQRLTKKYLSAVTELKYKNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTTE 309

Query: 321 TYTKG 325
            YT  
Sbjct: 310 IYTHV 314


>gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4]
 gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4]
          Length = 293

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 95/276 (34%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH- 128
           ++E+ +   +  + + ++ +S+ +   Q          +FD   + ++ I+  + S    
Sbjct: 2   MNEFLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDEFDPNSVNSQQIQQWILSLMSV 61

Query: 129 --TPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +  +  + +++++  + +       +            ++P          T      
Sbjct: 62  DLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDNS 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDG 240
            K    E ++ RL  E    +G+R S+      + + ++  +I+   K      + +   
Sbjct: 122 MKPDSFEYTRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERIIPIDKS 181

Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
            +  +            I +   F+ N+ +KM             ++      +S H +R
Sbjct: 182 LINDIERYITLRNESIDIFEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKRSPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   + GA  + +    G  ++   + YT  +
Sbjct: 242 HTFATSLLNGGADINAVKELLGHSSLSATQVYTHTS 277


>gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 166

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SI 224
            +    +    G + R   E L  +G+R S+        +   +                
Sbjct: 1   MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +    + I         K L  +   ++  F+N+   K+         K     AG+NK
Sbjct: 61  ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + H +R   AT   + GA    +    G   +   + YT
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161


>gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
 gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC
           43063]
          Length = 309

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 85/275 (30%), Gaps = 32/275 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--------KHTPSSA 133
              + ++  ++     + I      G     ++T   + S   +            PSSA
Sbjct: 19  RGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFGDYAAVAPSSA 78

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSE 188
            + + S+R   ++A     V  NP   +   K         T E++Q             
Sbjct: 79  RRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLLEAASAPGDDN 138

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--------- 239
             + R   EFL  +G R S++    V  +  +      +  G      L           
Sbjct: 139 ALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLSMLGHLAKDAL 198

Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKF 292
                     LA     +   F+N   + ++        +A A +A   V    H +R  
Sbjct: 199 EAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITVPVGPHTLRHC 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AT     GA    +    G  +V   + YTK ++
Sbjct: 259 FATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 293


>gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium
           breve DSM 20213]
 gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 319

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 83/279 (29%), Gaps = 15/279 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L++ +  +      +  +   +ES    + +        +I +  +R         R   
Sbjct: 44  LLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYLNRYENERHAG 102

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       M   F W   ++Y+  +P   + R K         + E+++  +      
Sbjct: 103 KVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLETLRDRCGT- 161

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +     +  +         T K      V         L   
Sbjct: 162 LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFDARTKLHLTAY 221

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +           N D  +++        +     AG+++   H  R+  AT + D G
Sbjct: 222 LQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRRTLATHAIDKG 281

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               ++    G   +D    Y    ++  +   + R + 
Sbjct: 282 MPIEQVQKLLGHARIDTTMHYV-MVNQNNVKASHRRYLE 319


>gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis
           str. MC2 155]
 gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC
 gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155]
          Length = 300

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 93/292 (31%), Gaps = 31/292 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130
              Y         + ++R ++      +        G+    +++   +RS +  +  + 
Sbjct: 8   FDAYLGLE--RGHSDHTRRAYRGDLTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASG 65

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +   +  +  +S++    WA+R+  + ++P   ++ PK +        ++         +
Sbjct: 66  AARTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVN 125

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            G         + RL  E L  +G+R S+ C   +  +  +   ++   K     TV   
Sbjct: 126 SGAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFG 185

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG--VNKSA 286
           +     L              +              +  Q         +      +   
Sbjct: 186 EPAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
           HG+R  +AT   + GA    +    G  ++   + YT    +R+R     + 
Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAH 297


>gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 351

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 95/320 (29%), Gaps = 23/320 (7%)

Query: 19  GKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK     +     GRRIR           AY   +     ++ ++   +    T+  L+ 
Sbjct: 9   GKWQVQCFPNGRDGRRIR-KQFSTKGEALAYERHVKDEAEQKPWLGDKQD-KRTVSDLVD 66

Query: 77  EYRKSAHWG-----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRK 127
            + ++                 ++ES    +  +     + +   K +    +     +K
Sbjct: 67  TWHRAHGVTLEDGDRRKDAMTYAYESMGKPLATEFNAKLFSQYREKRLSGELQRNTRVKK 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKS 184
            +P +    L   R +F   +R +       L   RP R            + D    + 
Sbjct: 127 VSPRTVNLELAYFRAMFNELIRLDEWKAEHPLKNVRPYRTDESEMAFLRLEEIDTLLKEC 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             S  S      +  L +G R S++    +  +  +  +    K     T+ + +  +K 
Sbjct: 187 ANSSASDLLTVVKICLATGARWSEAESLSLSQITKDRITFIKTKGKKNRTIPVSEELIKS 246

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +     G+  F           + F    K         + +H +R   A+    AG   
Sbjct: 247 IPKKESGEPLFVSC-------YSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAGGNI 299

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G   +     Y+ 
Sbjct: 300 LVLQRILGHTDIKMTMRYSH 319


>gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
 gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister
           microaerophilus UPII 345-E]
          Length = 372

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 118/355 (33%), Gaps = 33/355 (9%)

Query: 17  RHGKIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G    +   G       R+      T     +  L  +   +          T     
Sbjct: 19  RKGHFRAFLDLGKHPVTHKRVRKTFSGTSRAEVLKKLQNALADKNKGVLTHTSNTPFNVF 78

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR----KHT 129
              + +     ++  ++   ++++ ++  I    D    +I    I   +       K++
Sbjct: 79  ALHFLE-LKKNTIKESTFTYYKTHIEKDFIPILKDTPISRIDVNKINQLLNYMLNVKKNS 137

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           P+S     T++  +FK A+ +  +  NP     +  +    + I P+TK+++    +   
Sbjct: 138 PTSIKTKKTTLHAIFKQAIYESLITKNPVEFSIKLSKSRAKKEIIPFTKQEISSLLAASK 197

Query: 188 EGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
           + +           ++ +G+R  +        +     +I  +++ +             
Sbjct: 198 DNNSLYTLYPIIRLVIETGMRRGEVLGLHWDDIDYTKNTITIKRSVSSFGVTSTKTTSSY 257

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            T+ +    +++L          F+N     ++    S  FK    + G+ N+  H +R 
Sbjct: 258 RTLIVSKDTLEMLKKYKKHDTKVFVNAIYSYLSPNLLSKKFKILCDELGIVNQHFHNLRH 317

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
            +AT   + G     +    G   +     TYT          +  ++ S+++ S
Sbjct: 318 TNATWLINQGVDIATVSRRLGHSNISTTLNTYTHFI------PEADKKASTIIGS 366


>gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
 gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60]
          Length = 345

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 26/278 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---- 126
            L++ +         +  +  S+       +        +   IT + +   +  R    
Sbjct: 49  ALVNRWLAELSNKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRRLDVD 108

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           K + SS+   LT +R L+KW + Q+ + +NP  ++   +           + + Q     
Sbjct: 109 KISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQLLDQA 168

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QK 228
                       + +   E L  SGLR  +     +  +  +   ++             
Sbjct: 169 APEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTRIVPI 228

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                   +     + L +       F       +++     +  K +A +AGV  +   
Sbjct: 229 GEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGVAQDLYP 288

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+           +    G   +   + YT 
Sbjct: 289 HLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTH 326


>gi|257090583|ref|ZP_05584944.1| phage integrase [Enterococcus faecalis CH188]
 gi|294619912|ref|ZP_06699288.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|256999395|gb|EEU85915.1| phage integrase [Enterococcus faecalis CH188]
 gi|291593849|gb|EFF25347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 380

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 4   ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +QI+   G      I+  + +  V+
Sbjct: 64  APDMTFEDLYNEWIAHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNDL 182

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGNVII 242

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362

Query: 327 DRI 329
           +  
Sbjct: 363 NNA 365


>gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 384

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 108/383 (28%), Gaps = 52/383 (13%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INS 63
           + K   + G   Y F          G++ R       T   A  +         E  + +
Sbjct: 4   IKKYTKKDGSKAYMFNLYLGTDPVTGKQRRTTRRGFRTIAEAKTALSRLELEVIENGLPT 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
            ++K  T       + +     ++  ++  +  +  + QI+   G     KI T   +  
Sbjct: 64  SKRKIMTFDEAYKMWFEQYK-TTVKESTAYTQNNIINVQILPYFGSLRVDKIDTAFCQKQ 122

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           V        +    +   R +  +A   + +  NP   V  PK++        + +    
Sbjct: 123 VNRIFKNLKNYNNVINITRQILDYAKIMKQIKTNPMNDVIVPKKRKTLDDTDNQVNFYTK 182

Query: 183 KS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------- 221
           +               Q  + F  L ++G+R  +        +  N              
Sbjct: 183 EQLKVFLGALKKHTTYQMYVVFRVLAFTGMRKGELAALKWSDIDFNNETITIDKTVAIDS 242

Query: 222 ----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------SI 271
                    +   +I T+ + D  +  L               K       F        
Sbjct: 243 NGGLHIQAPKTRKSIRTISVDDTTLNALRTWKNELRKELFKQGKNIDKGDGFIFHRNNGN 302

Query: 272 WFKAK--------ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
           +              K  + +   HG R   A++  ++GA+  E+    G + +      
Sbjct: 303 FINKYIDQFLPSFLRKYNLPQIKPHGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDI 362

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           YT      R   K + + +  +D
Sbjct: 363 YTHVTKSAR--EKTAEKFAKYID 383


>gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
 gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp.
           1_1_41FAA]
          Length = 371

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 121/376 (32%), Gaps = 39/376 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY--FRKGH---GRRIRLPYPHESTFIPAYMSALTGST 55
           M              T +GK  Y      G    G++I+  +    ++  + +       
Sbjct: 1   MQKKKSNGEGSIITTTLNGKPYYKASVTIGFDSAGKQIKKSFG---SYKKSVVLEKMNKV 57

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK-SGDFDYRK 113
                 N       T   L  ++  +     ++ N+   +E+ +  +I+     +    +
Sbjct: 58  KYEAKNNLLSNSNITFGDLFKQWIFNHKKVEVSDNTFGEYETAYRLRILPYNISNKRVNQ 117

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEG 170
           IT   ++        K + ++  +    +   FK+A+ Q  +  NPCL V  + ++K E 
Sbjct: 118 ITLNDLQMYFNELQEKFSTNTIKKAYIQIHSCFKFAIIQGILNKNPCLGVTLQKEKKKEK 177

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------- 221
              ++K++ +   +  ++         F  ++GLR  +        ++  I         
Sbjct: 178 YNVFSKQEQELILNTLNKKDIVDCLIYFTFFTGLRLGEVLALKWTDVKGKILSVERQYNR 237

Query: 222 -------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                        +  K  KT              ++            +++ + +   +
Sbjct: 238 TVTIKDIGVSKLTYEFKDLKTKNSKREIPLPDKALVILEGIPKTYELIFSDEGKPIERKR 297

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
                 A   K  + ++S H +R   AT   +       + +  G   +D     YT   
Sbjct: 298 PQRRITALCKKLNLEHRSFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVM 357

Query: 327 DRIRLGIKNSRRISSV 342
              ++  +   +++++
Sbjct: 358 QDKKM--EIIDKLNNL 371


>gi|238917723|ref|YP_002931240.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238873083|gb|ACR72793.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 400

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 117/373 (31%), Gaps = 46/373 (12%)

Query: 5   LRLPPFVTKERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           + +P +   + ++ G     F      G  ++I+            Y         +   
Sbjct: 1   MNMPAY---KDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDY--------ERNYK 49

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
           I        T       Y +      + +N+ ++ E   D +I+    +    +IT   +
Sbjct: 50  IRQENNLDMTFGEFWKLYTEDVK-NYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDV 108

Query: 120 RSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTE 169
           R                ++ +        +  +F  A R   +  NP        + + +
Sbjct: 109 RKWQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKK 168

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  WT E+ ++F     +      AFE L ++G+R  +     ++       +++  K+
Sbjct: 169 EMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKS 228

Query: 230 GTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                               T++LP    + +             +    +  +      
Sbjct: 229 YQRLQGQDVITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEM 288

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +     +GV K   H +R    +   D G +A  +    G +++D    Y+      ++ 
Sbjct: 289 ERGCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVA 348

Query: 333 IKNSRRISSVVDS 345
           +  + R+ +V  S
Sbjct: 349 M--ADRLDAVNAS 359


>gi|269926039|ref|YP_003322662.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789699|gb|ACZ41840.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 363

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 97/348 (27%), Gaps = 40/348 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K   R        +  +G R  +     +         L  +         P +   T+ 
Sbjct: 8   KIIKRGNAYRAQVQI-NGVRHSITGKTRAEVQRKRRELLAAADQ----GIMPARTRVTVA 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             +S + +      +   +   +++     I+   G     K+   H++           
Sbjct: 63  EFLSHWLEIIKPQ-VRPATLADYQNSVRNHIVPALGTIKLTKLEPAHLQELYSQLLAKGL 121

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +      ++    K A R   +  N       PK   + ++  T E ++        
Sbjct: 122 SAKTVRNIHGTIHKAIKDAARWGMLPRNVADIARPPKVSRQELQCLTPEQVRLLMQA-CA 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITV 235
           G++        + +G R  +        +      ++  +  T               +V
Sbjct: 181 GTRYEPLLGLAIATGARQGELLGLRWADIDLQRGVVQITRQLTRQGTFSEPKTSSGKRSV 240

Query: 236 ELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            +P   ++LL                    +   F N     M+A      +     +AG
Sbjct: 241 HVPVSTVELLRRHRSLQLQERLSAGDRWQDQGLVFANTLGGPMDARNLIRAWHRILQQAG 300

Query: 282 VNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           + +   H +R  SA++    G +   +    G   +    + Y    +
Sbjct: 301 LPRMPFHSLRHTSASLLLRQGVSPRLIQQRLGHADIAVTLQVYAHLVE 348


>gi|254451305|ref|ZP_05064742.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198265711|gb|EDY89981.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 371

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 102/320 (31%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+          
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R             
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWWKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++        +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    S           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSREWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345


>gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 328

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 101/307 (32%), Gaps = 45/307 (14%)

Query: 74  LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKS---GDFDYRKITT---KHIRSGVESR 126
            I+ Y  +      A  N+  S+ S   Q+       G        T    +++S    +
Sbjct: 14  YITYYIDALVSERSATQNTLESYRSDLHQLEDFLLKSGTTLVGASKTNIKDYVKSLCTQK 73

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDM--- 179
           K+  SS  + +++M+  +K       +  NP  +     + PK      +  + ++M   
Sbjct: 74  KYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEMLLL 133

Query: 180 ------QQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQN-------NIFSIK 225
                    +      S+   A   +LYS G+R S+     +  + +         + I 
Sbjct: 134 IDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYIII 193

Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274
             K+     +   +  ++ L                    F  N   + +   +     K
Sbjct: 194 KGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDWLFPGNKPNKPITRQRIGQLVK 253

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329
             A K  ++    S H +R   AT   D+GA+   +    G   +   + YT  A++   
Sbjct: 254 ELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLK 313

Query: 330 -RLGIKN 335
            +L   +
Sbjct: 314 DKLANSH 320


>gi|301062332|ref|ZP_07202995.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443536|gb|EFK07638.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 389

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 99/351 (28%), Gaps = 35/351 (9%)

Query: 14  ERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++ + GK + Y   +R   G++ + P         A          + +  +       T
Sbjct: 29  DKAKSGKRLMYWISYRLPSGKQKQEPVGASIDDARAADGKKKILKKEGKLFDIRDDTKMT 88

Query: 71  LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
              L S Y       +L + ++        ++     G     KIT   + +    R   
Sbjct: 89  FNELTSWYLGLEKVKALASYHTIKI---SIEKFNAVFGGMIVAKITPADLENYQAKRAKA 145

Query: 127 KHTPSSAIQFLT-----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              P++    +       ++      +  E +     +     K      R  T ++   
Sbjct: 146 GKAPATIDHEIGKTKTMILKAFDNGKISGETLRTFKKIKKTLKKGADVRDRILTHDEFS- 204

Query: 182 FKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITV 235
                 E S   +        Y+G+R  +  +     +     +I       K     T+
Sbjct: 205 ---RLCENSTQHICGMLTMGYYTGMRRGEILKLTWDKVDMKNRTINLEAADTKDRERRTI 261

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AH 287
            + D   K+L           +   + K  +            KAG+            H
Sbjct: 262 PIYDELFKMLKNVTRHINDKHVFLFRGKPVSD-IRTGLVKACKKAGITYGRFEKGGFIFH 320

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
            +R    T    AG     +MA  G  T +  + Y T   D  R  ++   
Sbjct: 321 DLRHTFNTNMRKAGVPESVIMAITGHSTREMFDRYDTVDLDDTRQALQALE 371


>gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1]
 gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1]
          Length = 313

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 81/285 (28%), Gaps = 31/285 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK 127
           E+  S      LA  +  ++E    Q ++          G  D   +    +R+ + +R+
Sbjct: 19  EWLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLRAFLAARR 78

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182
              + A      L  +R   ++  ++         ++  P+      +P T  D ++   
Sbjct: 79  IDGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAADAKRVTS 138

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
                       ++    F  L  SGLR  ++       +    +     T K      V
Sbjct: 139 GEGQLAEEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLRVTGKGSKTRVV 198

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSA 286
            +     + +A                   A              +   +   +    + 
Sbjct: 199 PVLPVVGEAVAEYQRLCPYHLEAEAPLFRGARGGALQPAIIQREMQKMRSALNLPDTATP 258

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H +R   AT     G     +    G  ++   + YT   D  RL
Sbjct: 259 HALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYT-AVDTSRL 302


>gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 335

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 91/323 (28%), Gaps = 43/323 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF 109
           +  ++       + +     L   +  + +        + ++   +       + +  D 
Sbjct: 1   MDQTSHNAPPPGAAQADTAALPEPMRAWLRHLETNRRYSPHTLDGYRREL-HFLHELADR 59

Query: 110 ---DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                 KI   HIR  +         P S  + L + R  ++W      +A NP   V  
Sbjct: 60  AKLPLDKIANGHIRQFIARLHAQGRGPRSLARTLAAWRGFYQWWAPAVDLAGNPVAGVRA 119

Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           PK      +  + E  Q                 + +  FE L  SGLR S+     +++
Sbjct: 120 PKAPRGLPKALSVEQTQALLDRPAAKVANEPVALRDQAMFELLYSSGLRLSELVGLDLRY 179

Query: 217 LQNNIFSIKTQ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
            +   +                 K G   +V +    +  L+     +      +     
Sbjct: 180 TRTADYESAGWLKLDEAEVEVLGKGGKRRSVPVGQAALAALSKWIAARPQLAPPSPAPQD 239

Query: 263 -----------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
                      +++     +     A  AG+      H +R   A+    +      +  
Sbjct: 240 AAALFLGARGKRISPRVVQLQLAQFAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQE 299

Query: 310 TYGWKTVDQAETYTKGADRIRLG 332
             G   +   + YT+  D   L 
Sbjct: 300 MLGHANISTTQIYTR-LDFQHLA 321


>gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
 gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum
           ATCC 6940]
          Length = 299

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 22/296 (7%)

Query: 62  NSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTK 117
               +    L   I ++ +        +  +   + S    +         FD   +   
Sbjct: 3   KRVEEPTGQLAEAIEDFAEHQLLVRGRSAATVKGYRSDLRDLARSVPDFASFDLNALRAW 62

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +   ++  + ++  +   + R    WAVR+ ++  +    +  PK      +     
Sbjct: 63  LGEAV--AQGKSRATLARRTAAARAFSTWAVREGHLQADVAARLVSPKVGKHLPKVLAAT 120

Query: 178 DM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGT 231
           +                 +     E L  +G+R ++     V  L  +  +   T K   
Sbjct: 121 EAGELVGNAASHDEVHFLRDSAMLELLYATGMRVAELVGLDVGDLDLHRRTALVTGKGNK 180

Query: 232 IITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAG-V 282
              V   D     LA                 F+     +++  Q     +  A   G  
Sbjct: 181 QRVVPFGDAASDALATWIEKGRLQLAGDTDAVFVGTRGGRIDQRQVRRVVEKAAQITGAT 240

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
             + HG+R  +AT   + GA    +    G  ++   + YT   A R++     + 
Sbjct: 241 GLTPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAH 296


>gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 331

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 23/318 (7%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
             +    R  R+     S      + A   +          R     L  ++  Y K   
Sbjct: 14  QVQVDGRRLHRILPAGSSARDAKQVEARLRAELTSARPLPERAGDPPLAAVMPLYLKHLE 73

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
               +  +      +  +I      +   +      +     +  + P++  + L +++ 
Sbjct: 74  HLR-SPETA---RFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYAPATINRSLGALKK 129

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A  QE    N    ++R     E     T E +   +           A    L++
Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVN--ELASHASDPVAAAIWIALFT 187

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G R  +  +   + +     +I+    KT    TV +       L   P+          
Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +NA      F+    KAG+     H +R   A+I   +GA  + +    G  +    
Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295

Query: 320 ETYTK-GADRIRLGIKNS 336
           E Y     D   + ++ +
Sbjct: 296 ERYAHLQTDAQSIALERA 313


>gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
 gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC
           700755]
          Length = 379

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 16/253 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
              + N+  +++S      +   +   + +T + I       +   K + S+    + ++
Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKYKISESAQNTIINAI 164

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +  ++  +       N     +               +  +         + +     + 
Sbjct: 165 KCYYEHTLGLPREYYNITRPKKSQDLPNILH-----INEVRRIINSPSNLKHKTILHTIY 219

Query: 201 YSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR  +  R  V  +++      IK  K        L    ++LL       +  +  
Sbjct: 220 GAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLLELLREYYKIYKPAYWL 279

Query: 259 NDKQ---KMNATQFSIWFKAKATKA-GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
            + Q   + ++T     ++    +  G    + H +R   AT   + G +   + A  G 
Sbjct: 280 FEGQTGGQYSSTSIQSIYRKAVKETNGNPWSTPHTLRHSFATHLMERGTSLRHIQAALGH 339

Query: 314 KTVDQAETYTKGA 326
            +    E YT+  
Sbjct: 340 NSSKTTEIYTRVL 352


>gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 83/287 (28%), Gaps = 26/287 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VESR 126
            ++  +     +    + ++  ++      ++  +G        +    +R+       R
Sbjct: 3   DVLVAFADHLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVEVGDLDLPLLRAWLAEHARR 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++  + ++S +    WAVR+  +  +P   ++ PK           E         
Sbjct: 63  GAARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGA 122

Query: 187 SEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           +  S         + R+  E L   G+R  + C   +  +  +   I+         +V 
Sbjct: 123 AGDSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVP 182

Query: 237 LPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   L        +                  +++              AG +   
Sbjct: 183 YGGPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAGQSVGP 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H +R  +AT   + GA    +    G  ++   + YT  +      +
Sbjct: 243 HALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAV 289


>gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 367

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 106/359 (29%), Gaps = 37/359 (10%)

Query: 5   LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           ++ P  +  +   +G    Y   +R G      L                  +      I
Sbjct: 1   MKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANAI 60

Query: 62  NSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            S R    T              L   +  Y++         N+    +S  D +   +G
Sbjct: 61  KSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRG-KKNT-GQIKSVTDILKEYAG 118

Query: 108 DF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +     ++        ++             + S+   +          AVR + +  NP
Sbjct: 119 ERFTLNQVDLTFCHGYIDYMLTSYRPKGKPLSASTRNTYYQIFNGALNAAVRAKRILKNP 178

Query: 158 ---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                  E+PK         T E+++   +   +    + A+ F  + GLR SD      
Sbjct: 179 FNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQW 238

Query: 215 QHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +++  +    +                  + L   P   +    ++       +  +   
Sbjct: 239 KNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQLI 296

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 297 KPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 355


>gi|151222137|ref|YP_001332959.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295428587|ref|ZP_06821214.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|150374937|dbj|BAF68197.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|295127569|gb|EFG57208.1| phage integrase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 353

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      +   ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|62912537|ref|YP_227613.1| putative integrase [Haemophilus phage Aaphi23]
 gi|273809608|ref|YP_003344846.1| putative integrase [Aggregatibacter phage S1249]
 gi|31408042|emb|CAD90776.1| putative integrase [Haemophilus phage Aaphi23]
 gi|261410515|gb|ACX80346.1| putative integrase [Aggregatibacter phage S1249]
          Length = 348

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 102/318 (32%), Gaps = 18/318 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R     Y F   +G R+R      S    A   A               +   + +  
Sbjct: 9   KKRGEIWHYSFTSPNGERVR-RSARTSDKNQAQQLASKEYNECWRVFKLGERPNYSWQEA 67

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPS 131
           + ++               +       + +  GD    +I     K I+           
Sbjct: 68  VVQWLDEKPKRKQD----RNMLYGLVWLDKYLGDKKLNEIDRTLIKFIQYEKAKEGVKAR 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +RV+ + AV  +++   P +  +        +R  T+ +  +      E  +
Sbjct: 124 TINAVLQQIRVILRAAVEWDWLDKCPAI--KFLPEPKRRVRWLTQHEEIRLIEELPEHLK 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           P    +F + +GLR S+  +     +    +    + +  KTG  I V L D  ++++  
Sbjct: 182 P--IVQFAILTGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVS 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                +        + +     +  F+A   +AG+ +   H +R   AT    +G   + 
Sbjct: 240 QFGKHKENVFTYKGKPVRIAN-TKAFRAALQRAGIKDFRFHDLRHTWATRHIMSGTPLYV 298

Query: 307 LMATYGWKTVDQAETYTK 324
           L    GW   D    Y  
Sbjct: 299 LQELGGWSKSDTVRKYAH 316


>gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 451

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 110/313 (35%), Gaps = 15/313 (4%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84
             +  R R+  P  +  + A     TG     + E               + +  K   +
Sbjct: 49  IDNRTRTRILAPVSALTVKAAREKATGQLQAWREENTQPSMSASPRFDVFVEQTWKPMIF 108

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142
                +++ S       +++   G +    I  + +++  +    T   +A + L +++ 
Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQS 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           +FK A+RQ +   NPC+ + +  ++    R  +  +MQ+      +     GS  + A  
Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADI 227

Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L   +G R S+      ++++ N   +   KTG  +           +      K   
Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   KQ  + +     +     + G+ +   H +R   A+ +   G +   + +  G K
Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345

Query: 315 TVDQAETYTKGAD 327
            V     YT   D
Sbjct: 346 KVTMTLRYTHVGD 358


>gi|221140347|ref|ZP_03564840.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452366|ref|ZP_05700376.1| phage integrase [Staphylococcus aureus A5948]
 gi|282904663|ref|ZP_06312538.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282909331|ref|ZP_06317147.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958775|ref|ZP_06376221.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284025051|ref|ZP_06379449.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304379190|ref|ZP_07361933.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|257859953|gb|EEV82791.1| phage integrase [Staphylococcus aureus A5948]
 gi|282326899|gb|EFB57196.1| phage integrase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282594912|gb|EFB99888.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789815|gb|EFC28637.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|302333670|gb|ADL23863.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751899|gb|ADL66076.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304342236|gb|EFM08132.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|320143657|gb|EFW35435.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 345

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
 gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM
           17241]
          Length = 339

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 45/304 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---------------------GDFDYRKITTKHIRSGV 123
              +  +  ++       +R                        D     I++  +    
Sbjct: 22  KGRSKRTVDAYYIDLRTFLRYIKCVKHYVADPDDIDAFSQVSIADIPLETISSIKLGDVY 81

Query: 124 ESRKHTPS-------SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   +  S       +  + ++S+R  F +  V+   + INP  ++E P  K    R  T
Sbjct: 82  QYLNYAASERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRYLT 141

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            E+  +  +     S  R      L+   G+R S+     +Q ++ +   +   K     
Sbjct: 142 LEECLELLTHIESSSYERDFCIATLFLNCGMRLSELVGINLQDIRGDTIRL-LGKGNKER 200

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-- 282
            V + D   + L      + T      +          +++  +          +AG+  
Sbjct: 201 IVYINDACKRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIARCLEQAGLAG 260

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              S H +R  +AT+    G      L    G  ++   E YT  +DR       S  +S
Sbjct: 261 QGYSPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKAAKSSPLS 320

Query: 341 SVVD 344
           SV  
Sbjct: 321 SVAP 324


>gi|148360267|ref|YP_001251474.1| integrase [Legionella pneumophila str. Corby]
 gi|296106689|ref|YP_003618389.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148282040|gb|ABQ56128.1| integrase, phage related [Legionella pneumophila str. Corby]
 gi|295648590|gb|ADG24437.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 393

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 113/371 (30%), Gaps = 35/371 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYM-------SALTGSTPKRE 59
            +       G   +++R    G  +++ L      +   A             G  P   
Sbjct: 25  GLGIRVMPSGNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIEN 84

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                 K+  T   LI  + ++    +         ++   + II   GD    K+ TK 
Sbjct: 85  TKLEKLKEDNTFSKLIQSWYENYAVKNRKQPRPIK-YQIDSE-IIPLLGDTVLDKLQTKD 142

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKT 168
           I   ++       P  A + L++++ +  +AV + Y+  NP  ++         +P+ + 
Sbjct: 143 ITIALDKIVQRGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERV 202

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                                   RLA + ++ +G+R  +   A                
Sbjct: 203 LSPEEIRIIWKFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPP 262

Query: 229 TGTI----ITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +     + + L +   KLL                     M+        K   T+ G
Sbjct: 263 EHSKGGITVKIHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQTRVG 322

Query: 282 VN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337
           V   +AH +R+  AT   ++       +    G K      TY K     + +  +    
Sbjct: 323 VPEWTAHDLRRTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDAWA 382

Query: 338 -RISSVVDSDD 347
             I+ ++ S D
Sbjct: 383 SHIAKLISSKD 393


>gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016]
 gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 99/358 (27%), Gaps = 45/358 (12%)

Query: 20  KIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTP----------KREYINSPRKKP 68
           K   Y+R    +R   L   +  T   A   A   +            + E     ++  
Sbjct: 41  KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQDTRHEAKKREQRNS 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            TL   + E+  +      A  ++ S         +        +IT   I+  V  R  
Sbjct: 101 LTLSKFLEEHYSAYLMSINAKTAQKSLMCIQSNF-KHLSTKPLVEITAWDIQQWVAERSK 159

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++       +R +F  AV   ++  +   +V+ P+   + IR  +  +       
Sbjct: 160 AGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLES 219

Query: 186 WSEGSQ--------------PRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNN 220
                                RL  +             L +G+R  +       H+   
Sbjct: 220 LKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEILSLKWSHINME 279

Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              +  +          T+ L +    +L           +  ++       +   +++ 
Sbjct: 280 DRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWESL 339

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             +AG+     H +R   A+      A  + +    G   +     Y   A   +   
Sbjct: 340 LKEAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASA 397


>gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 341

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +        T +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIRTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+         +   R    I+ 
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329


>gi|254438003|ref|ZP_05051497.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253449|gb|EDY77763.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 368

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+          
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKSMAVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + Y +
Sbjct: 326 IVGRLLNHTPLSITGQRYVR 345


>gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 10/250 (4%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVL 143
            + + N+  ++   F Q +         +++T HI    +        SA     S+  +
Sbjct: 34  KNYSKNTTKTYMHMFKQFLTYMYPMPLHQVSTAHIMYYHKELVTKQNVSASYQNQSINAI 93

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            K+ + +            RP++  +  +  + +++    +  +   + +   + +   G
Sbjct: 94  -KFYIEKVLNLPKVQYDFCRPRKAKKLPKVLSLQEVADIITVTN-NIKHKTILKMIYGCG 151

Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-- 259
           LR S+     V+ +   N    ++  K        L    +  L    I  +        
Sbjct: 152 LRISECVNLKVEDIDSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYYIVYKPKKWLFEG 211

Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
            D ++ +A+     F     KA V+   + H +R   AT   DAG     +    G  + 
Sbjct: 212 ADGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSS 271

Query: 317 DQAETYTKGA 326
              E YT  +
Sbjct: 272 KTTEIYTHVS 281


>gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN]
 gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae
           Br4923]
 gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC
 gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 297

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
            ++ E+ +        + ++R ++      ++           +++   +RS + +    
Sbjct: 2   AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 61

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     + +++++    WA  +  +A +P   ++ P+          ++   Q  +  
Sbjct: 62  GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 121

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G         + RL  E L  +G+R S+ C   +  +      ++   K     T   
Sbjct: 122 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKS 285
                  L           +  +                    ++  +  A  AG  +  
Sbjct: 182 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            HG+R  +AT   + GA    +    G  ++   + YT  A  R+R+    + 
Sbjct: 242 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAH 294


>gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13]
 gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
 gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653]
          Length = 307

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233
                        +  +     E L  +GLR S+     V   + +   +    K     
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
            V L     + L           G +           +       F  +           
Sbjct: 186 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
 gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17]
          Length = 361

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 102/338 (30%), Gaps = 29/338 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TL 71
           K   + G   Y  +     R       +        +  T +  +             TL
Sbjct: 6   KRAGKDGSTSYRAKVRLKGRNTESATFDRLTDAKRWAIQTEAAIREGRYFQSAAGKGKTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
              I  Y +     +L  + R    +       + G    + I+   I    +  K TP 
Sbjct: 66  ADAIDRYARD-TLPALKDSDRR--LAQLQWWRFQIGAVPIKDISASMIAKYRDELKSTPF 122

Query: 131 -----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178
                      +S  ++L ++  +   A  +  ++A NPC  V+R K      R    ++
Sbjct: 123 KTGKTEKQRTDASTNRYLAALSPVMAAAADEWEWIADNPCRKVKRGKEAKGRTRFLFDDE 182

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233
            ++      + ++    ++     + +G R S+      + +     S+    T      
Sbjct: 183 RKRLLEACDKATETPELKIIVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETR 242

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGV-NKSA 286
              L    +  +      +     ++               F   +     +A V +   
Sbjct: 243 AAPLVGPALHAMTEWAKVRPLNDSSHVFSGRTEKTKNKPLDFQRAWMTALKRAEVKDFRF 302

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R  +A+  A  GA   E+    G KT+   + Y+ 
Sbjct: 303 HDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSH 340


>gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 24/281 (8%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-GDFD---YRKITTKHIRSGV 123
            T   ++  +          + ++  ++ +   + +R   G+ D     +I    +R+ +
Sbjct: 1   MTTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHL 60

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             R+       SA + L++++    +A  Q          +  P+ K    RP T ++  
Sbjct: 61  ADRRADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAV 120

Query: 181 Q-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                     +     ++ R     L  +G+R +++       L        T K G   
Sbjct: 121 NLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALPASALPLGEAVTITGKGGRQR 180

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKS- 285
            V L       +             +      A                     G+  + 
Sbjct: 181 VVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA 240

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R   AT    AGA    L    G  ++   + YT+ 
Sbjct: 241 TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRV 281


>gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2]
          Length = 317

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 86/300 (28%), Gaps = 44/300 (14%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYF---------DQIIRKSGDFDYRKITTKHIRSGVESR 126
             + K     + + ++  +++            D + +   +   +           +  
Sbjct: 5   QRFIKQLKLENKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLDQFDDW 64

Query: 127 ------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                                  S  + L+++R  + + + Q     NP   ++ PK+  
Sbjct: 65  QAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKAPKQPK 124

Query: 169 EGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIF 222
              +    +  +Q         +  + +  FE L   GLR S+     +    +   + +
Sbjct: 125 ALPKSLDVDLTRQLLEQPLKTWQDVRDQAIFEILYSGGLRVSELVELDLSPGLDGLASGW 184

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFK 274
                K        +     K L      +  +        F+N   +++          
Sbjct: 185 VRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVRSIQTQLD 244

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +  +AG+    S H +R   AT   ++      +    G   +   + YTK  D   L 
Sbjct: 245 KRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTK-LDLQHLA 303


>gi|291457638|ref|ZP_06597028.1| phage integrase [Bifidobacterium breve DSM 20213]
 gi|291380691|gb|EFE88209.1| phage integrase [Bifidobacterium breve DSM 20213]
          Length = 376

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 102/342 (29%), Gaps = 38/342 (11%)

Query: 11  VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + +  T+ GK     +RK  G               A+ +A   +         P+    
Sbjct: 5   IRQYATKSGKRYEVRYRKPDGTPTGKRGFRRKMDADAWGAANVTTAKSVGAYIDPQAGRR 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
            ++ L   +  +    +   +   + E  +   +  K G  + + IT   ++  V +   
Sbjct: 65  LVEDLWEPWLAAKKTKA-KPSYIETLERAWRVHVAPKWGMREVQSITHDEVQMWVSALAE 123

Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  SA   L +   +R L   A   + +  NPC  +E P+++ +     +   + Q  + 
Sbjct: 124 S-KSASVVLRAEGILRALLAKAKADKCIHDNPCDGLELPRKRRKKHVYLS---IDQLLAL 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------- 235
                  R     L   GLR  +     V  +  +   I  +++ T +            
Sbjct: 180 ADASDWRRPIVLTLGLCGLRWGELVGLQVGDVDLDRQRIHVRRSATEVNHQIVVDAPKTG 239

Query: 236 ------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                     LL             +     ++  +    ++  
Sbjct: 240 EERTVIFPRMLQSCLEEACDGRRQSDLLFPDRRTGSYLRKTHGPCSTSSWFYWAKKRSLG 299

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +   + + H +R   A++   AGA    +    G K+    
Sbjct: 300 DEIADSMTIHDLRHTCASLLVHAGANVKAVQRQLGHKSATMT 341


>gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/395 (13%), Positives = 105/395 (26%), Gaps = 64/395 (16%)

Query: 10  FVTKERTRHGKII--YY----FRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60
            + + +T+ GK+   ++    ++   GR  R+      +       Y   +  +     +
Sbjct: 4   RLRQWKTQEGKVQEAWWVDVKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTF 63

Query: 61  INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                     TL   +  +   +   +   +S ++     D  +I   G+     I    
Sbjct: 64  GKENGAGRVLTLGEFVPRFLTYSENNN-KHSSVVTKRQILDDHLIPAFGNMPLDAIGPAE 122

Query: 119 IRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVR 149
           I     + +  PS                             S    LT +  L   A  
Sbjct: 123 IEDFKAAMRKKPSGARARKEAPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQE 182

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           Q  +   P         KT+          +  +   +   + R      L +GLR  + 
Sbjct: 183 QGVLQHVP----RVKLFKTDKPAFDFLSFEEAERMSNAAEPEWRTLILVALKTGLRLGEL 238

Query: 210 CRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFI 257
                  L                 +   K G   TV+LP   ++ L           F 
Sbjct: 239 IGLQWADLDLQRGKLNVRRTIWRGVVGLPKGGRERTVDLPTSAVEALKAHRHLCGPYVFC 298

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYG 312
             D + + A            +AGV++       H +R    +  A  G     +    G
Sbjct: 299 QTDGRPLTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMG 358

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             T++    Y   +   R      + +   +    
Sbjct: 359 HATIEMTMRYAHLSPEAR--ESAVQELDRPIPQPR 391


>gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 331

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 23/318 (7%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
             +    R  R+     S      + A   +          R     L  ++  Y K   
Sbjct: 14  QVQVDGRRLHRILPAGSSARDAKQVEARLRAELTSASPLPERAGDPPLAAVMPLYLKHLE 73

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
               +  +      +  +I      +   +      +     +  + P++  + L +++ 
Sbjct: 74  HLR-SPETA---RFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYAPATINRSLGALKK 129

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A  QE    N    ++R     E     T E +   +           A    L++
Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVN--ELASHASDPVAAAIWIALFT 187

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G R  +  +   + +     +I+    KT    TV +       L   P+          
Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +NA      F+    KAG+     H +R   A+I   +GA  + +    G  +    
Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295

Query: 320 ETYTK-GADRIRLGIKNS 336
           E Y     D   + ++ +
Sbjct: 296 ERYAHLQTDAQSIALERA 313


>gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 402

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 113/373 (30%), Gaps = 36/373 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49
            ++ P  +  +   +G    Y      G+R         +P           T + A  +
Sbjct: 30  KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQTTMDAANA 89

Query: 50  ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98
             +    +     +    RK  T L   +  Y ++         S+          +   
Sbjct: 90  IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 149

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              + +  GDF    IT        + +  +  +   +  ++      AVR++ +  NP 
Sbjct: 150 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 209

Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                   + +P+     +     + +        E    + A+ F  + GLR SD  + 
Sbjct: 210 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 269

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
               +  +    +   +       +      + L   P        +N     +A    +
Sbjct: 270 KWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 329

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  AG++K    H  R   AT+    GA  + +    G   V   + Y K  ++ 
Sbjct: 330 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 389

Query: 330 RLGIKNSRRISSV 342
           +   +    ++ +
Sbjct: 390 K--DEAVNLVNGL 400


>gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
 gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001]
          Length = 367

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 94/330 (28%), Gaps = 39/330 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---- 105
           A+           + R      +  +      A    +A N+  ++E    Q +      
Sbjct: 9   AVDAEALLPPGDAALRAAMLGWREAL------ARERRMAANTVEAYERDLRQFLAYRAAR 62

Query: 106 SGDFDYR---KITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            G         +  + +R+ + +R+       S ++ L  +R   ++  R+ + ++    
Sbjct: 63  FGTPTIAGLIALKPRDLRAFMAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALG 122

Query: 160 SVERPKRKTEGIRPWTKE---------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           +V  PK +    RP                         ++       L  SGLR S++ 
Sbjct: 123 AVRSPKVERRLPRPLPVPAALAMTAPGTRPDDSREPWVLARDAAVIALLYGSGLRISEAL 182

Query: 211 R--AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------- 261
              A    +        T K G +  V +     + +A                      
Sbjct: 183 GLAARDAPVPGIDEVRVTGKGGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKG 242

Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++         A     G+    + H +R   AT           +    G  ++   
Sbjct: 243 GPLSPRVVQYAVAALRGALGLPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTT 302

Query: 320 ETYTKGADRIRL--GIKNSRRISSVVDSDD 347
           + YTK  D  RL    +++   +  +    
Sbjct: 303 QIYTK-VDAARLMSAFEDAHPRARRLPEPR 331


>gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
 gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1]
          Length = 300

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 39/308 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG-- 122
            T+      Y +       + ++R ++      +     +         +T   +RS   
Sbjct: 2   DTVLEEFDRYLELE--RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLA 59

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              +     S+  +  +S++    WAVR+  +  +P   ++ PK +        ++  + 
Sbjct: 60  AHAAADTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARD 119

Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
                  G+        + RL  E L  +G+R S+ C   V  +  +   ++   K    
Sbjct: 120 ALEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG- 281
            TV   +     L              D              +  Q         +  G 
Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +   HG+R  +AT   + GA    +    G  ++   + YT              R+ 
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLR 290

Query: 341 SVVDSDDP 348
           +V D   P
Sbjct: 291 AVHDQAHP 298


>gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 280

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 94/264 (35%), Gaps = 12/264 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKH 128
           L  L   Y +     + +  +  S+      +IR  GD +   +T  H+++    E ++ 
Sbjct: 3   LSELWLHYEQDKTLENYSKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEEQKRL 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS       +R  F+WA   + ++ NP + V+ PK      +P  +E ++  +    +
Sbjct: 63  KPSSFQHRCKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLRIAS-K 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                L  EF+  +G+R  +            N       K      V         +  
Sbjct: 122 SPLEGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQR 181

Query: 248 TPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                           N   ++M+  Q    FK  A KA V+++   H +R   A+   +
Sbjct: 182 YFDSRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLRHSYASHLIN 241

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            GA+   +    G K  +    YT
Sbjct: 242 RGASLEMVRDMLGHKRTETTRVYT 265


>gi|224371854|ref|YP_002606020.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694573|gb|ACN17856.1| Phage integrase family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 360

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 99/338 (29%), Gaps = 31/338 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  + +  F    G+R  +  P  +T   A                   KK  T   + 
Sbjct: 6   KRRDRYVLDFYDLEGKRKWITMPKGTTLKAAKEELRKVEDDLATGNYISPKKTPTFDQVA 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
            E+       ++  ++   +E +      +  +    +IT + +   +  R+      S+
Sbjct: 66  QEWLDHKKM-NIRASTWAVYEGHTKNHFPEFKNLKIHQITIQRVEKFITDRQAAGMNLST 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDMQQFKSFW 186
             + L S+R +F  AV++ Y   NP    + PK +       + I+  T + +  F    
Sbjct: 125 LRKILVSLRQIFNLAVKRGYCPRNPLDYADMPKSQGEETDGADKIQILTHDQITAFLEVV 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG----- 240
           +E  +  + F   ++SG R  +        +   +      +        +         
Sbjct: 185 TE-QKYHVLFSLAIFSGARQGELLGLKWSDILWGDSQIHIQRSFNNQRFYDTKTKGSNRK 243

Query: 241 ------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                         +L          F         +    + +F      A + +   H
Sbjct: 244 IDIGPVMLKKLKKWRLACPPGGLDLVFPTAKGNPMNHNNMVNRYFLPGLKAAKLERIRFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +R   A++  D G     + A  G          Y  
Sbjct: 304 DMRHTYASLLIDQGENIKYIQAQLGHSNPTVTLNVYAH 341


>gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum
           PYR-GCK]
 gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC
 gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK]
          Length = 300

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 39/308 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG-- 122
            T+      Y +       + ++R ++      +     +         +T   +RS   
Sbjct: 2   DTVLEEFDRYLELE--RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLA 59

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              +     S+  +  +S++    WAVR+  +  +P   ++ PK +        ++  + 
Sbjct: 60  AHAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARD 119

Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
                  G+        + RL  E L  +G+R S+ C   V  +  +   ++   K    
Sbjct: 120 ALEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQ 179

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG- 281
            TV   +     L              D              +  Q         +  G 
Sbjct: 180 RTVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGG 239

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +   HG+R  +AT   + GA    +    G  ++   + YT              R+ 
Sbjct: 240 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLR 290

Query: 341 SVVDSDDP 348
           +V D   P
Sbjct: 291 AVHDQAHP 298


>gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
 gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07]
          Length = 329

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y  +  +   L+ ++  S+      +     + +   D  ++   HIR  +      
Sbjct: 20  IAAYLDTLKFERQLSQHTLASYARELAVLQQLGAQFAAGIDLMQLQPHHIRRMMAQLHGG 79

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  ++W   R   V  NP   V  PK   +  +  + E        
Sbjct: 80  GLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALMEQ 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKT 229
                 E  + R   E     GLR S+     ++H++   +             +   K 
Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREVMVLGKG 199

Query: 230 GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
               TV +     + L                P      F++   +++   Q  +  K  
Sbjct: 200 SKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHALFLSARGKRLAQRQIQMRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
 gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis BMB171]
          Length = 369

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++   ++++ +  +I   G     K+   HI+   ++     
Sbjct: 66  KDYLNHWLE-IKSMSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  ++ NP    E PK++   I+ WT+E++++F +   
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   +  L                  + ++    N   + +    F   F     K
Sbjct: 244 TIPVPIETIAALKRHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSFIRMTHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
            G+     H +R   AT+    G     +    G   +      Y+       +  +  +
Sbjct: 304 VGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
 gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149]
          Length = 323

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 98/308 (31%), Gaps = 42/308 (13%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127
            IS + ++       A N+ +++              +       +   +      ++  
Sbjct: 7   WISAFLEAQAAELGAARNTLLAYGRDLKDFDSFLTHRNLDFHAAAQADVEAYLIACDAEG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + ++  + L++++ L+++A  + + + NP L +  P R  +  +  ++ ++ +      
Sbjct: 67  LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126

Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
              +            E L  +G+R ++     V   + +   +    K G    V L  
Sbjct: 127 SSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186

Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                 +                  P  +  +        +   +F +  K  A  AGV 
Sbjct: 187 PARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGHLTRNRFYLLIKELAVDAGVS 246

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT     GA    +    G   V   E YT   +          R+S
Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLE---------ARLS 297

Query: 341 SVVDSDDP 348
            +V +  P
Sbjct: 298 ELVLTHHP 305


>gi|237745754|ref|ZP_04576234.1| phage integrase [Oxalobacter formigenes HOxBLS]
 gi|229377105|gb|EEO27196.1| phage integrase [Oxalobacter formigenes HOxBLS]
          Length = 354

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 16/320 (5%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  F    G+RIR                 L      R+Y+  P +   T    
Sbjct: 5   KRGKTYWISFTAPDGKRIRCSAGTSNRQKAQQLFDKLKHEAWNRKYLGIPER--HTWDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
              + +          S     S    +          +IT   I    E +K   TP+ 
Sbjct: 63  ALLWIREKTDKK----SLKDDVSMLRWLTPFLRSRYLDEITRPMIARIGEIKKAESTPAR 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A ++L+ +R +F  AV+     +    ++   +     +R  T    +  + F       
Sbjct: 119 ANRYLSLLRAIFNRAVKIWE-WLPKAPTITLYREPKLRVRYLT--PEEIRRVFDELPDHQ 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           +  F F + +GLR S+        +     +I                    +    + +
Sbjct: 176 KPIFTFSIMTGLRRSNVLNLRWDQVDFMQDAIIISGNEMKAGKTHVVPMSATVKQILMDQ 235

Query: 253 ETFFINNDKQKMNAT--QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
                                 F+    + G+ +   H  R   A+I    G   +EL  
Sbjct: 236 VGKHPQYVFTYRGRRIGDIKTAFRKALKRTGITDYRWHDNRHTWASILIQNGVPLNELQE 295

Query: 310 TYGWKTVDQAETYTKGADRI 329
              W + +  + Y   + + 
Sbjct: 296 MGAWNSAEMVKRYAHLSPQK 315


>gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
 gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 110/347 (31%), Gaps = 36/347 (10%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G        G+     +RIR+      T   A       S+        P+ K   LK 
Sbjct: 9   KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAEKFVNEYSSKVDNGFLLPKSKDIYLKD 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127
            I ++  +    S+ +N++ ++ S  +  II   G++   ++ T  I++           
Sbjct: 69  FILDWFYNHKVLSIGINTKNNYLSRIETYIIPLLGNYKLTELDTLTIQNFYNYLLTKDNP 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSSA + + ++    K+A + + +   P    +    +   I  W+K+ +  F +   
Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQQLDFFLN-EI 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +           +G+R  + C      +      +   +              + L  
Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFGKSYLNITRQVISDKSTNTLVCTENLKT 246

Query: 248 TP--------------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           T                        +   ++ + +  N    S+ F  K  K        
Sbjct: 247 TKSDRTISIPKILLKEFEKNLKDPNDFIVLSRENEMCNPRNISMDFTKKVNKYKDKLPQI 306

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           S HG+R   AT+    G     +    G   +     TYT   + ++
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353


>gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601]
          Length = 316

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 91/310 (29%), Gaps = 32/310 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P+    T+      + K+     L  ++  ++ S+    I  K GD     ++   +R  
Sbjct: 2   PQTMTKTVTDACESWLKTCERNQLERSTLKAYRSHARVHIEPKIGDLLLGDLSRGQVRDF 61

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKED 178
           +        + +   + + S+R +   AV +E++  +    V+  +R+            
Sbjct: 62  MHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRSESDERVIPTK 121

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKTQKT 229
            +      +  +  R  F   +++G+R S+                H++           
Sbjct: 122 DEIRLIVENAPASHRAMFIAAIFTGMRISELRGLTWDNVDLDRGLVHVRQRADEHCVLGK 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKATK 279
                         L+  T    +       +  +              ++  FK     
Sbjct: 182 PKSRAGHRDIPMTPLVRDTLAQWQRTVPVTVQNLVFPNGAGKIQNYSNIYNRVFKPMLVA 241

Query: 280 AGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
            G+           H +R  +A++  + G    ++    G  ++      Y    +    
Sbjct: 242 NGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQTLLGHASITMTMDVYGHLFENAEE 301

Query: 332 GIKNSRRISS 341
            +    ++ S
Sbjct: 302 DVSMFAKLES 311


>gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 384

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 119/378 (31%), Gaps = 55/378 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + KE+ +     +YFR         G  ++         T     +  +        Y  
Sbjct: 7   LIKEKKKG----FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKAQVDDGSYFK 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
              +        +  +  +++  ++ + +  S E      I++        +ITT  I S
Sbjct: 63  ESTED---FPMFMERWFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDS 119

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +    ++ +   Q    +   F  AV+   V +NP  + + PK K+E    WT ++
Sbjct: 120 FYVDKLDNGYSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDE 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
           + +F +     S   + +   +++G+R  +        +      I+ +++   +     
Sbjct: 180 VNRFLNLIKNSSME-IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGL 238

Query: 234 --------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                       +  +   + L             +D + ++  
Sbjct: 239 IFKEPKTKKSKRQISISQHVVNILKKHKQKQEFQKEKLGTQYQDNNLIVCTDDGKPLDPR 298

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
                F     +A V + S H +R   ATI    G     +    G   V    + Y+  
Sbjct: 299 NLLRQFYRLIEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHV 358

Query: 326 ADRIRLGIKNSRRISSVV 343
           +D   L  + + +  + +
Sbjct: 359 SDD--LQEQAAEKFENAL 374


>gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 376

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 37/360 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +   +G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           I S R    T              L   +  Y++               +S    +   +
Sbjct: 69  IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTGILKEYA 126

Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           G+     +I        ++             + S+   +          AVR + +  N
Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYHPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186

Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P       E+PK         T E+++   +   +    + A+ F  + GLR SD     
Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            + +  +    +                  + L   P   +    ++       +  +  
Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6]
 gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6]
          Length = 402

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 99/358 (27%), Gaps = 45/358 (12%)

Query: 20  KIIYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTP----------KREYINSPRKKP 68
           K   Y+R    +R   L   +  T   A   A   +            + E     ++  
Sbjct: 41  KYYLYYRIHGKQRNFLLGSANALTPAQARDLAKEKAGQVAAGEDVQVTRHEAKKREQRNS 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            TL   + E+  SA+  S+   +            +        +IT   I+  V  R  
Sbjct: 101 LTLSKFLEEHY-SAYLMSINEKTAQKSLMCIQSNFKHLSTKPLVEITAWDIQQWVAERSK 159

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++       +R +F  AV   ++  +   +V+ P+   + IR  +  +       
Sbjct: 160 AGRAPATISYAYNRLRAVFNRAVEWGFIDSHSLDNVKIPRIDNKRIRYLSVSEEAALLES 219

Query: 186 WSEGS--------------QPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNN 220
                                RL  +             L +G+R  +       H+   
Sbjct: 220 LKARDARLKDEALQRYGKRAQRLVSQRYVDFLEPLIVLALNTGMRKGEMLSLKWSHINME 279

Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
              +  +          T+ L +    +L           +  ++       +   +++ 
Sbjct: 280 DRYLTIRSENAKSKNKRTIPLNNTVYTMLQAWHEQNPDTELVFERNGKPLDSYQYQWESL 339

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AG+     H +R   A+      A  + +    G   +     Y   A   +   
Sbjct: 340 LKDAGIENFRFHDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHLAPEHKASA 397


>gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676]
 gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676]
          Length = 387

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 87/356 (24%), Gaps = 47/356 (13%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R  K  Y  R     + +               A      K     + +    T    
Sbjct: 5   RKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKDSKITFNEY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           + E+  +   G++A  + + +E      I+   G+   + +T    +  +     K++  
Sbjct: 65  LYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEKYSKK 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +      +M      AV +  +      S  + +      +    +     +        
Sbjct: 125 TVETINVTMHHALDIAVNELGILEKNPTSKIKLRTTRVTSKDDEIKCYDIDELQQFLNYV 184

Query: 192 PRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIF--------------------- 222
            +    F  +        +GLR  +      + +                          
Sbjct: 185 LKEKGGFKYFSLFMFLSRTGLRIGECLALQWEDVDFEEQKLFINKTLINTKRSEKILFGP 244

Query: 223 ------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                          T      + +E     +K           F   ++   ++ +   
Sbjct: 245 PKNKSSKRTISLDPSTISHLKKMKIEQNKQVLKNGKYYKDYNFVFTHEDNSCMLHPSSLK 304

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                 + K      + HG R   A     +GA    +    G  ++D     Y  
Sbjct: 305 FLL-EASKKGNFKYITLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTANVYLH 359


>gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 291

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 85/291 (29%), Gaps = 26/291 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             + ++ +       + N+ IS+ +   + ++   D   ++   + +   V   ++    
Sbjct: 2   DWLEKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQDVREYRNYLLN 61

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                PSS  + + +++   ++ ++           +         IR  ++ ++ + K 
Sbjct: 62  IAKLKPSSINRKMAALKNFNQFLIQTGTGIEADICGISVADIHDREIRTISRNELNRLKR 121

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233
                   R      L   +G+R S+      + +           +   I+  K     
Sbjct: 122 AVYASGNKRDIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENYSYIVIRNGKGNKYR 181

Query: 234 TVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            + L     K L    + +           +  +         K     AG+   SAH +
Sbjct: 182 EIPLNSQVKKALEEYLVTRSHLSGRIFIGQRGPLRRESVDKIIKKYCRMAGIEEISAHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339
           R    T           +    G  ++      Y + +   +       ++
Sbjct: 242 RHTFCTRLMSENVPIPIISKLAGHSSIQTTMDFYVRVSRADKTA--AVEKL 290


>gi|258425113|ref|ZP_05687983.1| phage integrase [Staphylococcus aureus A9635]
 gi|257844696|gb|EEV68740.1| phage integrase [Staphylococcus aureus A9635]
          Length = 344

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      +   ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
 gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380]
          Length = 263

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 17/247 (6%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           I    G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP 
Sbjct: 3   IAEPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANPA 62

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQ 215
             V  P+      +    +++ +            + R   E +  +GLR S+      +
Sbjct: 63  KGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCK 122

Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNAT 267
           H+   +       K      V +    +  L              +  F+ N  ++++A 
Sbjct: 123 HVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISAR 182

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                F     K GV  +   H +R   AT   ++      +    G   +   + YT  
Sbjct: 183 NVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH- 241

Query: 326 ADRIRLG 332
            D   L 
Sbjct: 242 LDFQHLA 248


>gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 330

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
             L+  Y  +      +  +   ++S  D +           +TT  IR+      E RK
Sbjct: 53  AELLQAYLSAKKIEGCSEKTIGYYQSTIDTLFVAVC-KPVCDVTTNDIRNYLSGYQEQRK 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++++  +P   + R + ++      T E+M+  +    
Sbjct: 112 VSRVTIDNMRRIFSSFFAWLEDEDFIVKSPVRRIHRVRTESLVKEVLTDENMEVLRDSCQ 171

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +      + +  +               V         L 
Sbjct: 172 E-IRDIAMIDLLASTGMRVGELVNLNREDIDFHERQCVVFGKGNKEREVYFNARTKIHLQ 230

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                +           +N   +++ +   +  +    K  +     H  R+  AT++ D
Sbjct: 231 NYLSSRTDDNPALFVSLSNPHSRLSISGVEVRLRTLGRKVNIAKVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPIEQVQRLLGHVKIDTTLHYA 314


>gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
 gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505]
          Length = 287

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 13/260 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I+++         + +S+ ++       I    D      T  H R+  E    +  + 
Sbjct: 23  AINQWL-----YGKSNHSKRNYTRVIRSYISYLSDIHIANSTAAHFRNYQEYLYQSGKTI 77

Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               T    ++  F +   +  +  N    V+ PK  +                     +
Sbjct: 78  NTINTYTNIIKSFFTFLRDESVLPTNITHRVKSPKPVSALRERILTRAEIDAMITLETNT 137

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAM 247
           + RL  + L + GLR S+        +++N    +   T K     T+ +P      L  
Sbjct: 138 RNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWASLKS 197

Query: 248 TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                E+    + K  + +         +  + + G++ S H +R   A+++   GA  +
Sbjct: 198 HKTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGISASPHWLRHTHASLALHNGADIN 257

Query: 306 ELMATYGWKTVDQAETYTKG 325
           ++  + G  +V     Y   
Sbjct: 258 QVSTSLGHSSVATTTKYLHA 277


>gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 386

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 104/362 (28%), Gaps = 51/362 (14%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K++ ++G   Y++R  H    R    +  T         + +      + + + +    
Sbjct: 6   YKKKVKNGNTYYFYRLNHKNLKRPRDLYGKTVQELVEKIDSLTYQLDRNVTTTKVR---F 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHT 129
              +  +    H  +    +   + S FD  I+     +     +T   ++  + S    
Sbjct: 63  GDYMKNWLDKVHGINKKAGTIQGYSSLFDNYIKDSSLYNIQLTDLTALDVQDYLNSLLRK 122

Query: 130 PSSAIQFLTSMRVL------FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             S    ++S++ L      + +  ++  V  +  + +++P    +G         +Q +
Sbjct: 123 GKSFN-VVSSVKKLIGPCIRYAYTQQKILVDFSRSIKIQKPSEIDDGTNVNPMTKEEQEE 181

Query: 184 S-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                EG+     F   L +G R  +        +    F IK  KT      +    ++
Sbjct: 182 FIKAIEGATYEPLFLMALNTGARVGELLALTWDDVDFINFEIKITKTLEYQKDKETKKYI 241

Query: 243 KLLAMTPIGKETFFINNDKQKM------------------------------------NA 266
            ++           +   +                                       N 
Sbjct: 242 HIINSPKTKAGNRTVPFPEFMAPYLKNLRAKELEKKMRLQNKYADRNLVFANRLGDFLNN 301

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   +   +   ++G+     H +R   AT   + G +   +    G   V      YT 
Sbjct: 302 SSVRVSMDSILKESGLPHFRFHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTH 361

Query: 325 GA 326
             
Sbjct: 362 VL 363


>gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 298

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 24/279 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124
           L+  +  +         LA NS  ++     + +      G   + ++    I++ +   
Sbjct: 4   LEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAEL 63

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  +P S  + L+++R L +    +     +P   +E P+         + +++ +  
Sbjct: 64  VRRGLSPRSQARALSAIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDEVDRLL 123

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIFSIKTQK 228
           +        G + R   E L  +GLR S+     +  +             N   I    
Sbjct: 124 AAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIVPVG 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSA 286
                 V+      +   +     +  F+     +M    F+      A+        S 
Sbjct: 184 APAAAAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R   AT   + GA    +    G   V   + YT  
Sbjct: 244 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHV 282


>gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
 gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12]
 gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 376

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 37/360 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +   +G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRTKELANGSKSLYLDIYRNGKRTYEYLKMYLIPETDRNARQQNETTMAAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           I S R    T              L   +  Y++               +S    +   +
Sbjct: 69  IKSKRIIELTSGEAGIMNHKDKVYLLDWMQLYKEEQKKRGKKN--IGQIKSVTGILKEYA 126

Query: 107 GDF-DYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           G+     +I        ++             + S+   +          AVR + +  N
Sbjct: 127 GERFTLNQIDLTFCHGYIDYMLTNYRPKGKPISASTRNTYYQIFNGALNAAVRAKRILKN 186

Query: 157 P---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P       E+PK         T E+++   +   +    + A+ F  + GLR SD     
Sbjct: 187 PFNEMEKSEKPKMPESVRSYMTIEEVRSLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQ 246

Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
            + +  +    +                  + L   P   +    ++       +  +  
Sbjct: 247 WKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGDKTADDHVFDL--PSGINQL 304

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K  A  AG++K  + H  R   AT+    GA  + +    G  +V   + Y K  ++ +
Sbjct: 305 IKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364


>gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 345

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 90/297 (30%), Gaps = 39/297 (13%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
           L++ Y         LA  +   + +  +++   +         +   H+R  V       
Sbjct: 18  LVTRYLAYVRVEKRLASRTVELYMADLEKLQANARKAGVALTDVKHTHLRRWVAQMHSRG 77

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S       L+  R  + W  R+  V  NP   V  PK      +  + ++  Q  SF  
Sbjct: 78  RSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLPKALSVDEAVQLASFEL 137

Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGT 231
           E +        + +   E L   GLR S+           A          +    K   
Sbjct: 138 EATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGWIDMQGGDAHVLGKGEK 197

Query: 232 IITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKA 277
             +V +    +K L      +  +              FIN    ++      +  K ++
Sbjct: 198 RRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQRGSRLTPQHIRVRLKQRS 257

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AG+      H +R   A+    +      +    G  ++   + YT+  D   L 
Sbjct: 258 QQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTR-LDFQHLA 313


>gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1]
 gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1]
          Length = 305

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 15/286 (5%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
              P    F+  Y+                  KP TL WL+SEY  SA +  L+VN++  
Sbjct: 2   KSKPDTPAFMHEYLRL-------TRDRKIAEAKPKTLAWLVSEYLASADYQKLSVNTKRD 54

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           +E     I  K G    + +  +  R       +  + TP SA   +T +  +  WA  +
Sbjct: 55  YERMTGVISIKFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNR 114

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           E +  NP     +  +       W    + +F +            +  L++  R  D  
Sbjct: 115 EIIIRNPLEKAGKLHKSNRKDIIWMPSQLSKFLNEAPAHLSD--VVKMALWTMQRKGDVL 172

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQF 269
                   +++  I   KTG  + ++  D  + +L        T    N+      ++ F
Sbjct: 173 GMPTIAYSDDLLWITQGKTGARVRIKPADEILPILRTAKEKNRTRVLANSFGDMWTSSGF 232

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
              FK +  +  +   + H +R  + T +   G     +    G  
Sbjct: 233 DSSFKKEMNRLEIKGVTFHDLRGTAITYAYANGMDVERIAEISGHS 278


>gi|66395519|ref|YP_239890.1| ORF011 [Staphylococcus phage 42E]
 gi|62636012|gb|AAX91123.1| ORF011 [Staphylococcus phage 42E]
          Length = 345

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKHDGKRYRKKGFRTK------REANSAGLDKLYELRSGFNIDNGITLEEYFK 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   +++    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKEPVVKENTYRHYKNALQHIQQHKIGKMELSKINKQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E     +    + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAHKVNYKAGKPTKSEQEKFISVTEYEILKEHVKKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRHISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            +++   I  + +        +     +   K+      +   ++H +R    +     G
Sbjct: 242 GVISSFAISYDGYIFKESGFIITLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|114331486|ref|YP_747708.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114308500|gb|ABI59743.1| phage integrase family protein [Nitrosomonas eutropha C91]
          Length = 341

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 109/342 (31%), Gaps = 30/342 (8%)

Query: 7   LPPFVTKE-------RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            PP++ K        R R  KI YY+  G   R  +    +      Y  A+        
Sbjct: 3   RPPYIHKNLPARMRARQRGKKIYYYYDTGGKPRKEISLGTD------YAIAVKKWAELEI 56

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117
                  +  T +++   Y +       A  ++    S  + + R   D      +I   
Sbjct: 57  DAKPKHNQIITFRYVAERYMREIMATK-APRTQKDNLSEIEWLYRFFDDPPAPLEEIEPI 115

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HIR  ++ R+     A +       ++    R+      P         + +G +    E
Sbjct: 116 HIRQYLDQRQAKTR-ANREKALFSHIWN-KAREWGYTSLPNPCAGIKGNREKGRKDVYIE 173

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           D      +       R A +    +G R +D        L +   ++K QKTG  + ++L
Sbjct: 174 DEIYMAVYKVASHPLRDAMDMAYLTGQRPADILALRESDLTDGRINVKQQKTGKKLRIKL 233

Query: 238 PDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK---SAH 287
                 L+      K    I +         QK++ T     F      AG+ K      
Sbjct: 234 EGELAALIDRIKSRKVKHTIRSLYLIVDETGQKLSYTTLRSHFDKARELAGIKKEEFQFR 293

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R  + T  A++     +     G   +   ETY +  DR 
Sbjct: 294 DLRAKAGTDKAESSGDIRQAQKQLGHANITMTETYIR--DRK 333


>gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152]
 gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 311

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           I ++       +   N+  ++            D     +T   +R  +       P++ 
Sbjct: 20  IEQFLTDLANANRPANTLRAYRGDLTGFAEHV-DGGIDGVTVAAVRGFLSGIADLAPATR 78

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189
            +   ++    +WAVR + +A NP   V+         RP    D+ +  +         
Sbjct: 79  KRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVPKTLPRPAPAADIAKVFAAICARRPRK 138

Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------I 232
                  + R+ FE     G R S+ C   V+     +     +  G             
Sbjct: 139 DVALDVLRDRVLFETAYVCGARASEVCELYVEDFDLRLDDEHVRLHGKGGTVRTVLLDDR 198

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
             V +   ++     T        IN     ++ +     +      AGV+   H +R  
Sbjct: 199 GYVAMLRLYLDRTGYTAGPMFRASINGRGGPLSYSAAHHRWSRYCAAAGVDIDIHQLRHS 258

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   +AG +   +    G  + +  + Y   AD+
Sbjct: 259 HATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294


>gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
 gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A]
          Length = 381

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 112/373 (30%), Gaps = 36/373 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49
            ++ P  +  +   +G    Y      G+R         +P             + A  +
Sbjct: 9   KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQATMDAANA 68

Query: 50  ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98
             +    +     +    RK  T L   +  Y ++         S+          +   
Sbjct: 69  IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 128

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              + +  GDF    IT        + +  +  +   +  ++      AVR++ +  NP 
Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188

Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                   + +P+     +     + +        E    + A+ F  + GLR SD  + 
Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
               +  +    +   +       +      + L   P        +N     +A    +
Sbjct: 249 KWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  AG++K    H  R   AT+    GA  + +    G   V   + Y K  ++ 
Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368

Query: 330 RLGIKNSRRISSV 342
           +   +    ++ +
Sbjct: 369 K--DEAVNLVNGL 379


>gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1]
 gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1]
          Length = 307

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|307693102|ref|ZP_07635339.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 377

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 107/351 (30%), Gaps = 51/351 (14%)

Query: 23  YYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWL 74
           YY      R  +G+RI+      +       +A  G          P+    +  TL   
Sbjct: 19  YYVSMDLGRDENGKRIKQYRTFPT-----LAAARNGLKEFHATREQPQFVPAQEMTLSQW 73

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           +  +  S    + A  +  +++    + I    GD    K++ K ++            +
Sbjct: 74  LEYWMDSIVRPNRAETTVYAYQKIIDNHIDPALGDTPLTKLSAKQVQEYYTTTQREANLS 133

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  +    +    + AVRQE + ++P   VE P+        +      +      +G
Sbjct: 134 SNTMRRHHDLLSSALRSAVRQEMIPVSPMNRVEPPRP-RPKETSFYDNLELKQLYQLIQG 192

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKTGTIITVEL 237
               L  +     G+R  + C     ++                 +   QK         
Sbjct: 193 KPLELPVKLAGSLGMRREEICGLKWDNVDLQRRLVIIREARTAYGANIVQKETKNRASVR 252

Query: 238 PDGFMKLLA------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  L                        +    +++ ++  +    S+ F     +
Sbjct: 253 TLYLADELCLLLEQEQSRQEALRCQDPDNFNPEGYVVLDHKQRPYSPNALSLAFTRFVRR 312

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
             + + + HG+R   ATI++  GA+  ++    G  T       YT   DR
Sbjct: 313 NNLPRLTFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHLVDR 363


>gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 341

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 25/333 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +    G+  YY     G  +R   P  + F+ +   A           +      +  + 
Sbjct: 11  KVNAKGRTYYYA-WRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128
           +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR        
Sbjct: 60  VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+   
Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC- 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245
              +   A +   ++GLR  D  R    H+ +N   +     +      + L      LL
Sbjct: 179 -SPEVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
              P        N  K       F   F     +A +   +   H  R  +AT    AG 
Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +   +    GW+         +   R    I+ 
Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 329


>gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
 gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62]
          Length = 310

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRK 127
            IS + ++       A N+++++      +          +   T   I +     +++ 
Sbjct: 8   WISSFLEAQAAELDAARNTQLAYARDLTDVADWLKSKGLHFSSATQGDIENYLIFCDAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  + L++++ L+++A  + + A NP + ++ P +     +  + E++ +      
Sbjct: 68  LAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEEVDRLLEASR 127

Query: 188 -------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
                  +  +     E L  +G+R ++     V   + +   +    K      V L  
Sbjct: 128 TSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKERMVPLSP 187

Query: 240 GFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                LA                        F        +   +F +  K  A   GV 
Sbjct: 188 PARTALADWIKRWDALQDAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKEFAVAGGVV 247

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 296


>gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 315

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 82/274 (29%), Gaps = 19/274 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +++ TT   L     +     ++   ++              G       T   +R+   
Sbjct: 22  KEEKTT--ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSP-DTATPDELRAYQL 78

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               T    S+    + S+R+ F     +E +        +            + E++  
Sbjct: 79  HMTDTEVTTSTFNTRIVSLRLFFGVTCGREEMKRYMQFRRKP----RRLPVVLSVEEIGD 134

Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238
             +     G   R A      +GLR S+ C   V  +     +  +   K G      L 
Sbjct: 135 LLAAVPGPGLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLS 194

Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
            G + LL             F        ++  Q +  F +    AG+NK  + H +R  
Sbjct: 195 PGLLDLLREYWLEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHS 254

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   +AG     +    G   +     YT  A
Sbjct: 255 FATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVA 288


>gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1]
 gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 338

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +       G+R R            + + +     ++   N  ++    L  LI  +
Sbjct: 9   GRWLADVEPIKGKRFRKR-FKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135
                    ++ S    ++    I  + GD   ++ TT  +   R         P S   
Sbjct: 68  Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQ 191
             + ++ +F    R   +     L   +P +  + +  +  +D                 
Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L  E  L +G R S++    +  +++        K+  + +V +       L     G
Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           +  F             F+   K         +  H +R   A+     G     L    
Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297

Query: 312 GWKTVDQAETYTK 324
           G  +++    Y  
Sbjct: 298 GHSSLNMTMRYAH 310


>gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18]
 gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 320

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 39/297 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125
             LI  +            N+  ++      +    G      +       +   + ++ 
Sbjct: 9   ARLIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADTEVLRGYLAELDE 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R +  +S  + L++ R LF++ + +   A +P   +  PKR     +  +  D+ +    
Sbjct: 69  RGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVDRLLQH 128

Query: 186 WS--------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
                             ++     E L  +GLR S+     +   + +   I  +    
Sbjct: 129 AKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGN 188

Query: 231 TIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKA 275
               V L +   + +A                    K  F    +   +    F+   K 
Sbjct: 189 KERLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFARELKD 248

Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A  AG++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 LAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31]
 gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31]
          Length = 352

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 110/349 (31%), Gaps = 35/349 (10%)

Query: 19  GKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           G+    F      G+ +RI             Y         K   +++        + +
Sbjct: 14  GRWNARFTIKLINGNSKRIYKRGFKSKKEALEY--------EKNMILDNSLGSNIQFRKI 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           + +Y +      +  +S ++  S F  I     +F   +IT K I          + PS+
Sbjct: 66  VDKYLEYKKMR-VKESSFLNLTSIFKNI-TFFDNFILSEITPKIISDFQNELIKTYKPST 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++R+LF W VR   ++ NP   VER K +T         D              
Sbjct: 124 VKIININLRMLFTWCVRYRNLSNNPFDMVERLKIETSKKINIITVDEFNQIVEQVNNEDM 183

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVE 236
           +L F+ L ++GLR  ++    +  +     +I   K  T                   + 
Sbjct: 184 KLMFKLLFWTGLRIGEARALKIDDIDFENKTISVTKNYTKLHGKESLTSPKTKRSNRIIR 243

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
           + D  ++ +            ++   +   T ++  FK    K    +   H +R   A+
Sbjct: 244 IDDKLVEDIKEYLDKALYIIDDDFIFRHQKTSYTAKFKKIVLKVLKKDLRIHDLRHSHAS 303

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSV 342
              + G     +    G   +      Y+     +    I+   ++  V
Sbjct: 304 FLINNGVDILLISQRLGHSNIAMTLNVYSHLYPSKENEAIELINKLKGV 352


>gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11]
 gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11]
          Length = 325

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 19  RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 76

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 77  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 193 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 248

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 249 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305

Query: 323 TKGA 326
              A
Sbjct: 306 AHLA 309


>gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC
 gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 336

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 49/290 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRSGVESRKHTP---SS 132
            +L+ N+ I++ +   Q                FD  ++TT  +R  + +         S
Sbjct: 31  KNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAALIERGVRQRS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------- 182
             + L S++  +++     ++  +   ++  P+         T++  ++F          
Sbjct: 91  IARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFFNELLPQSAQ 150

Query: 183 ---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
                            + R   E L  SGLR S+     V  L      +K T K    
Sbjct: 151 GFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYVKLTGKGRKQ 210

Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV 282
             V +    +  L      +  FF            +     +  +       + T+  +
Sbjct: 211 RIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPMLVQRLTRKYL 270

Query: 283 -------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   K+ H +R   AT   ++GA  + +    G   +   E YT  
Sbjct: 271 TSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHV 320


>gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
 gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus
           fusiformis ZC1]
          Length = 376

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 94/349 (26%), Gaps = 53/349 (15%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
              T   A                  + +  TL   +  + K      L  N+  ++ES 
Sbjct: 22  GAHTKAEAEAILRRKILEYENAGTVFKPQEITLHDYLDFWMKEYVDLKLEPNTYYNYEST 81

Query: 99  FD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT----SMRVLFKW------A 147
               I    G +  + +T   ++  +   K     A Q L+     +             
Sbjct: 82  IRNHIAPHLGKYKVKSLTPHVLQQFIN-LKTREGYARQTLSIIIGILSKALNHAVYPYKY 140

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +++  +     +  ++ K   E ++  TKE+++   S   E     L F   L+ GLR  
Sbjct: 141 IKENPMHYVELMKDKKRKPTREELKLQTKENLRLINSILDEEHPFYLPFHIGLHCGLRVG 200

Query: 208 DSCRAGVQHLQN---------------------NIFSIKTQKTGTIITVELPDGFMKLL- 245
           + C    +H+                              +      T+   +   ++L 
Sbjct: 201 EVCGLEWKHINFEEMTLEVEQQLVGIKDENGKAQWQPRPPKSKAGYRTIPFGNTLAEMLK 260

Query: 246 ----------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                                  +      + +    +      +  + K  ++ + H +
Sbjct: 261 RIKKAQIENRLKYGEFYQKDPEHDYVCKKENGEHCTPSVIKYNTRKISEKLNISFNDHSL 320

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
           R   AT   + G     +    G       E  Y    +  ++    + 
Sbjct: 321 RHTHATTLIENGTPVKTVQKRLGHSRAAVTEDRYVHLTE--KMARDAAN 367


>gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 319

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 91/291 (31%), Gaps = 36/291 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128
           +  + +        AVN+  S+E   D +     +   R             SG+  +  
Sbjct: 10  MEAFLEMMSAERGAAVNTLQSYERDLDDLHSFLSERSVRLTEAGSNDLGAYLSGLSRQGF 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS  + L++MR  +K+   +     +P   ++ PK+     +    E++ +  +   +
Sbjct: 70  KPSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLLTQAEK 129

Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                        +  +  E L  +G+R S+      + L       +   K      V 
Sbjct: 130 EAAEESPDQLQRLRMLVLLELLYATGMRVSELVTLPAKVLDQEGRFLMIRGKGNKERLVP 189

Query: 237 LPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           L    +  L                  P     F   + +  +    F+   K  A +AG
Sbjct: 190 LSQSAIAALKTYGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLKDLAIRAG 249

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +     S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 250 LTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 300


>gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
 gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 316

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVES 125
           I  +         L+  + +++E    Q +R          G  + R +     R+ +  
Sbjct: 20  IGAWLDHLGDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLAR 79

Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
           R+   +   S  + L  +R    +  R+  V      ++  P++     +P +  D +  
Sbjct: 80  RRRAGAQSRSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAI 139

Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQKTGTII 233
                  ++     ++       L   GLR +++          +         K G   
Sbjct: 140 VSGELAMEAEPWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKER 199

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVN--K 284
            V +     + +             +           +N     +  +   +   +    
Sbjct: 200 IVPVLPVVCEAVDAYLKLCPYTPEPDGPLFLGARGGPLNPRLVQLAMQKLRSALALPDSA 259

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           + H +R   AT     G     +    G  ++   + YT   D  RL ++   +
Sbjct: 260 TPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYT-EVDTARL-LEAYDK 311


>gi|257426155|ref|ZP_05602571.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257437048|ref|ZP_05613089.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257271063|gb|EEV03232.1| phage integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283642|gb|EEV13768.1| phage integrase [Staphylococcus aureus subsp. aureus M876]
          Length = 349

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      +   ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 370

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 112/370 (30%), Gaps = 42/370 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHES---TFIPAYMSALTGSTPKREYINSPRKKP 68
            K+  + GK  Y                +    T      +ALT    +           
Sbjct: 5   VKKDKKTGKYFYIVDIDIDPLTGKRKQKKKRGFTSKKEAENALTNLLSEVHTGTYVEPSK 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            +    +  +  +    S+ + +    + Y + +II   G+    K+T+ H+++ V S +
Sbjct: 65  LSYGEYLESWFNTKR-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + +  +R   + A+  E +  N     + PK   E +  W ++++Q F  
Sbjct: 124 DEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEQEVQLFLK 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
              +G +  + F   L +G+R  +      + +      +   +T +             
Sbjct: 184 AAQDG-RYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLIISQTLSHDGKTFLVGGKTK 242

Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                + LP   +  L                     +          +N         A
Sbjct: 243 SSLRKILLPASTIAKLKKHRAVILKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
              KA V K   H +R   AT+    G     +    G   +    +TY+       +  
Sbjct: 303 LIQKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360

Query: 334 KNSRRISSVV 343
               ++  ++
Sbjct: 361 DAVNKMEEIL 370


>gi|66395739|ref|YP_240105.1| ORF010 [Staphylococcus phage 37]
 gi|62636162|gb|AAX91273.1| ORF010 [Staphylococcus phage 37]
          Length = 342

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 107/326 (32%), Gaps = 20/326 (6%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK  Y F+  + +R R           A  + +      ++  +       TL   +++
Sbjct: 8   KGKWQYEFKYNN-KRYRKKGFRTKK--EAEYAGIEKLNELQQGYSP--DNTLTLHQYLTQ 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSA--I 134
           +  +    S++ ++   ++S    +      D    K+T   +++ + +   T S     
Sbjct: 63  WVITYKRNSVSKSTYGGYKSNLKILKSFKIADIPIAKLTRLDVQNFLTAYTETRSQVTGR 122

Query: 135 QFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +  + ++      ++   +++  V      +   PK++T+      +    +        
Sbjct: 123 KMRSLLKTSLDDAVYDGLIKRNPVYRITFKAGHEPKKETDKFISIEEYKRLKN-KLMQSN 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----VELPDGFMKLL 245
            +  L    ++ +G R S +      ++  +++  + +   +        E      K++
Sbjct: 182 KRMDLILFIMICTGCRVSGAINMKSSYIGKDLYIDEQKTDSSPRYVDVAKEDMQHIRKVI 241

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
           +   +  + +   +        + +        +  + K + H +R    +     G + 
Sbjct: 242 STWAVSMDGYIFKDRGILPRVKRVNARLGELCEELDIKKITTHALRHTHCSYLLSQGVSI 301

Query: 305 HELMATYGWKTVD-QAETYTKGADRI 329
             +    G K +    E Y+   +  
Sbjct: 302 QYISKRLGHKNMRITLEVYSHLLEEQ 327


>gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 409

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 111/366 (30%), Gaps = 36/366 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-T 69
           V +E+     + + F    G R       +   +            ++  + +P K    
Sbjct: 4   VVREKDSGSGVWWVFVNEDGHRTSRKVGSKRLALEVAEKIKAKLVLRKCGLVAPEKVKLP 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRS---GVES 125
             +     + +     +    +   +     + +  K G     +I+   +R    G+ S
Sbjct: 64  LFRDYAQIWLEGFIKHTRRPATYERYRDVLKKYVTPKLGSLPLDQISRGQVRDLLLGIYS 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQ 181
           +  + +S      ++  +  +AV +E +  NP + + +     +     + P T E++  
Sbjct: 124 KGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGITKRLNLGRDDGNTVEPMTHEEVAL 183

Query: 182 FKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
           F    ++    R  F    + +G+R  +        +  +   I  +++           
Sbjct: 184 FLETCAKHYPERYPFFLTAFRTGMRLGELLALQWGDIDWHGRFIVVRRSFKGGYTTSTKT 243

Query: 232 --IITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKA 277
                V++ +   + L      ++                +     +        FK   
Sbjct: 244 GKARRVDMSNQLFETLCALQTKRKREAVGAGRGELAPLIFHKGGLPIAQNSARNHFKRIL 303

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334
            KAG+     H +R   A++   AG +   +    G  ++    + Y        R  + 
Sbjct: 304 QKAGLREMRVHDIRHTFASLLLSAGQSPVYVKEQLGHSSISMTVDIYGHLIPSSNRDAVN 363

Query: 335 NSRRIS 340
                +
Sbjct: 364 QLDEAA 369


>gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223]
 gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223]
          Length = 451

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 111/313 (35%), Gaps = 15/313 (4%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84
             +  R R+  P  +  + A     TG     + E+              + +  K   +
Sbjct: 49  IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIF 108

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142
                +++ S       +++   G +    I  K +++  +    T   +A + L +++ 
Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           +FK A+RQ +   NPC+ + +  ++    R  +  +MQ+      +     GS  + A  
Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEKVGGSIAQCADI 227

Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L   +G R S+      ++++ N   +   KTG  +           +      K   
Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   KQ  + +     +     + G+ +   H +R   A+ +   G +   + +  G K
Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345

Query: 315 TVDQAETYTKGAD 327
            V     YT   D
Sbjct: 346 KVTMTLRYTHVGD 358


>gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
 gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284]
          Length = 396

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 119/384 (30%), Gaps = 57/384 (14%)

Query: 14  ERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             T+ GKI Y F+         G  +  R             +S L     KR      R
Sbjct: 19  YTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQEDER 78

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           +     + + +E+ +      +  ++    +      ++   GD    ++T    +  V 
Sbjct: 79  RF---FRDVCAEWMEQYRLT-VRESTLEKTQRIIRVHVLPAFGDMLIDQVTPNVCQRVVN 134

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  ++L    ++F +A+R EYV  NPC  V  P+ + +          +   +
Sbjct: 135 KWFLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELN 194

Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
            +          +    F  L YSG+R  +      + +     +++  KT T       
Sbjct: 195 TFFDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKL 254

Query: 232 ----------IITVELPDGFMKLLAMTPIGKETFFINN---------------DKQKMNA 266
                       T++L D  M+ L      +   F+                      + 
Sbjct: 255 IVQPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSM 314

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK---TVDQAETY 322
              + W        G+   S HG R   A++   +G    E     G     +    + Y
Sbjct: 315 NTPTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVY 374

Query: 323 TKGADRIRLGIKNSRRISSVVDSD 346
           T   ++  +     +R  + V++ 
Sbjct: 375 THTTEQQNVA--ALQRFENYVEAK 396


>gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13]
 gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13]
          Length = 309

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233
                        +  +     E L  +GLR S+     V   + +   +    K     
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
            V L     + L           G +           +       F  +           
Sbjct: 188 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707]
          Length = 407

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SYFDQIIRKSGDFDYR-KITTKH 118
             TL+  I  Y +     + +  +  ++            +    +    D    +    
Sbjct: 11  EQTLEAFIE-YLRLE--RNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDLVRNW 67

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   ++  + T ++  + L++++  +K+   +  V  NP   +  PKR+       T+  
Sbjct: 68  IMQQMDD-ELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQ 126

Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
           +++               + RL  E +  +GLR ++      Q +     S++    G  
Sbjct: 127 IEEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRK 186

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN 283
                      E    ++ L          FF+    + ++                G+ 
Sbjct: 187 ERIVPFGEALKEQMKAYLTLKEQKVGQSRYFFVTLKCRPLSGADVYQVVHKALDIVPGLP 246

Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
           +  AH +R   AT   +AGA    +    G   ++    YT    ++++       R  S
Sbjct: 247 RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQS 306

Query: 342 VVDS 345
            V S
Sbjct: 307 QVPS 310


>gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium
           acetobutylicum EA 2018]
          Length = 328

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 99/313 (31%), Gaps = 52/313 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK------------SGDFDYRKITTKHI------ 119
           Y ++      +  +  +++       R               D     I +  +      
Sbjct: 23  YLRTIRAK--SERTIYNYKIDLILFFRFLKLYRGLSKDADFEDIVINDIDSSFLDSITLE 80

Query: 120 -----RSGVESRKHTPSSAI-QFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIR 172
                 S  E  ++  S A  + + ++R  FK+   + + +  NP L +E P        
Sbjct: 81  DLFAFLSFTEEFRNNGSYARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRNPI 140

Query: 173 PWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             T E+ Q   +        +        L  GLR S+     +  ++ +  +    K  
Sbjct: 141 YLTLEESQALLNSIDGPFKERDYCIITLFLNCGLRLSELVSIDISKIKGDTLT-ILGKGN 199

Query: 231 TIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKAT 278
              T+ L +  +K +      +               FI+    ++N     +  K  A 
Sbjct: 200 KERTIYLNEMCLKAIEDYIPVRNQKASSIKIEDKDALFISRKLTRINQRTIELMVKKYAL 259

Query: 279 KAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           KA ++    + H +R  +AT+    G      L    G ++V   + YT   D      +
Sbjct: 260 KANLDYEKLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDD------E 313

Query: 335 NSRRISSVVDSDD 347
           N R+       ++
Sbjct: 314 NLRKAVKSNPLNN 326


>gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 275

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
           + L+  Y K      L+  + ++++S     +    D   +  +T + I    E  + + 
Sbjct: 6   RELVERYLKFC--SGLSETTLVNYKSTMKIFLNYYDDSLSFENLTIEDIIEFFEVYEASR 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ I  + S+   ++WA + +Y+  NP  S     +  +  R +  +             
Sbjct: 64  NTKIYRIRSLNRFYEWANKHKYITGNPVRSFLNTLKPDKKERDYLTQKQSDDLLRSIIDV 123

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMT 248
              +   F + +G+R S+     +  +  N     I+  K      V         L   
Sbjct: 124 NFYIFTMFFIKTGVRVSEFQNILLDDVDFNEQTIFIRGGKGRKDRFVFFDLDMGINLKRW 183

Query: 249 PIGKETFFINNDKQKMNATQ-----------FSIWFKAKATKAGVNKSAHGVRKFSATIS 297
              ++          +N               +        K     + H +R   AT  
Sbjct: 184 LRERDILKPKAPNLFLNRRGKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATTC 243

Query: 298 ADAGATAHELMATYGWKTVDQAET 321
            D G     L    G + +     
Sbjct: 244 VDKGMDLRTLQDILGHEDIKTTSI 267


>gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 328

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 95/307 (30%), Gaps = 45/307 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG----VESR 126
            I+ Y  +     S A N+  S+ S   Q              +   +I+         +
Sbjct: 14  YITYYIDALASERSAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQK 73

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQF 182
           K+  SS  + +++M+  +K       +  NP  +     + PK      +  + E++   
Sbjct: 74  KYKSSSISRKISAMKNFYKCLFNNGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLL 133

Query: 183 KSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIK 225
                +            +     + L  SG+R S+     +  + +         + I 
Sbjct: 134 IDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIII 193

Query: 226 TQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFK 274
             K+G    +   +  ++ L                    F  +   + +   +     K
Sbjct: 194 KGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRVGQLMK 253

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-- 329
             A K  ++    S H VR   AT   ++GA    +    G   +   + YT  A+    
Sbjct: 254 ELARKCNIDENKISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLK 313

Query: 330 -RLGIKN 335
            +L   +
Sbjct: 314 DKLADSH 320


>gi|289627096|ref|ZP_06460050.1| phage integrase family protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868191|gb|EGH02900.1| phage integrase family protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 404

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 104/358 (29%), Gaps = 27/358 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPTLGLFGELTVEQARSLAQEWLAQVRLGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +   T+  L  ++ +         +++  +++  D+ I+   G    + +  
Sbjct: 87  PSADKAIARSAPTVADLCKKFMEDHSKQRNKPSTQRGYQAVIDRCIVPMLGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + S ++   H P+ A +  + MR +F  A    Y +         P            
Sbjct: 147 PDVASAMKKMVHKPAEANRTFSVMRKMFNLAEVWGYRSDGTNPCRHVPMYPNGKATHLIS 206

Query: 177 EDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++       +           + +   LA         R S+        +      +  
Sbjct: 207 DEEMGKLFRYLAFLETDGLGQDHAILPLAIRLQFEFAGRRSEIVALQWDWVDLENRRVVW 266

Query: 227 QKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             + T    +        L                 N+  + M   ++   +     +AG
Sbjct: 267 PDSKTGCMSKPLSEEGHRLLSTAPRKDGCPYVFPSPNHPGKHMTTGEYYGGWTRILKRAG 326

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           V +   HG+R  SAT  A++G      MA    KTV     Y    D+ +R   +   
Sbjct: 327 VTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVA 384


>gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6]
 gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6]
          Length = 381

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 113/373 (30%), Gaps = 36/373 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPYPHE------STFIPAYMS 49
            ++ P  +  +   +G    Y      G+R         +P           T + A  +
Sbjct: 9   KVKEPIRLRMKSLSNGSKSLYLDIYRDGKRTYEYLKMYIIPETDSNSRRQNQTTMDAANA 68

Query: 50  ALTGSTPKREYINSP---RKKPTTLKWLISEYRKSAHWGSLAVNSR--------ISFESY 98
             +    +     +    RK  T L   +  Y ++         S+          +   
Sbjct: 69  IKSKRIIELTSNEAGIVFRKDKTFLLDWMQVYMEAQESAGKKDGSQIKIAMRILKDYAGE 128

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              + +  GDF    IT        + +  +  +   +  ++      AVR++ +  NP 
Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188

Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                   + +P+     +     + +        E    + A+ F  + GLR SD  + 
Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
               +  +    +   +       +      + L   P        +N     +A    +
Sbjct: 249 KWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  AG++K    H  R   AT+    GA  + +    G   V   + Y K  ++ 
Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368

Query: 330 RLGIKNSRRISSV 342
           +   +    ++ +
Sbjct: 369 K--DEAVNLVNGL 379


>gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
 gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus
           phage 6180.1]
          Length = 374

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 101/345 (29%), Gaps = 33/345 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   +  +G+  Y    Y    +G+R  +      T      +A       +  ++ P+ 
Sbjct: 15  IKSYKKENGETAYKFLLYAGYVNGKRKYIRREGFKT----KQAARETLISLQAELDKPKS 70

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L  ++               +  +    I+ K        I    I+   E  
Sbjct: 71  -SMTFGVLTKQWLNEYEKTVQGSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEW 129

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQ 181
            +      + L  +R +   AVR  Y+  NP L +  PK K +           +     
Sbjct: 130 CNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFL 189

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQ 227
                ++  +    F  L ++G+R  +        L  N                   T+
Sbjct: 190 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTK 249

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK 284
              +   + L D  +++L        T  +    +    M  +    W         + +
Sbjct: 250 TKSSDRLISLDDETLEILQELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQ 309

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            + HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 310 ITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 354


>gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1]
 gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1]
          Length = 307

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 86/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTII 233
                        +  +     E L  +GLR S+     V   + +   +    K     
Sbjct: 126 LEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
            V L     + L           G +           +       F  +           
Sbjct: 186 MVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 402

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 123/380 (32%), Gaps = 41/380 (10%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYI 61
           P     PFV + R  +G +  YFR+G  R   L  P           + L       + I
Sbjct: 10  PETVRVPFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAI 69

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P     T+  ++  Y KSA + SLA  ++  ++ Y D++I  +GD    ++T   +  
Sbjct: 70  ARP--AAGTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIG 127

Query: 122 GVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAI------NPCLSVERPKRKTEGIRPW 174
             ++       +A + +  ++     A+  +          +    V RP    E    W
Sbjct: 128 MRDAWALRGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAW 187

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC---------RAGVQHLQNNIFS 223
              +++          QP LA    L  Y G R                  +        
Sbjct: 188 ELAEVEIAIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLV 247

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
             T K   +           ++A TP    T   N      +  QF    +    +    
Sbjct: 248 WITSKRQVLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAAD 307

Query: 282 ------------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                                + HG+R       A+AGA+  E+MA     +   A+ Y 
Sbjct: 308 GKIRATIKRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYR 367

Query: 324 KGADRIRLGIKNSRRISSVV 343
           + A R ++      RI +VV
Sbjct: 368 RQAQRRKMADAGQDRIDNVV 387


>gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
 gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei]
          Length = 319

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 89/310 (28%), Gaps = 47/310 (15%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRS 121
           L   I  +  +  +    +  +  ++      +             + D  ++  + +R 
Sbjct: 3   LGTAIDGFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRD 62

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + SR+      S+  + + +++   KW  +   VA NP   +  PK  +   R  + + 
Sbjct: 63  WLWSRQEQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQ 122

Query: 179 MQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           + +                 + R   E L  + LR S+ C   +  L     +++    G
Sbjct: 123 ISRILDRAESLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKG 182

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------------------- 269
                V         L        +  +N      ++                       
Sbjct: 183 AKERVVPFGAPAALALEEYLSSARSELMNVATDAASSAGLVRESATTAVFLSASGSRIQA 242

Query: 270 SIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  A           +  H +R  +AT   + GA    +    G  ++   + YT 
Sbjct: 243 HQIYRLVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTH 302

Query: 325 GADRIRLGIK 334
                RL   
Sbjct: 303 -VSTERLAQS 311


>gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
 gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1]
 gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1]
          Length = 309

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM
           20548]
 gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 329

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 93/306 (30%), Gaps = 52/306 (16%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYF-----------------DQIIRKSGDFDYRKI- 114
           +I++Y         L+ N+   ++                    +       +    +I 
Sbjct: 9   IITDYLNYLKSIRGLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIV 68

Query: 115 ------------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161
                           +      +  + ++  + +++++  +K+     E +  N    +
Sbjct: 69  NPKFFESLTLQDFYAFLSFLDNEKNDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKL 128

Query: 162 ERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             PK         T  + +        +       +        L +G+R S+     ++
Sbjct: 129 SNPKISQRQPVYLTLNETELLLDTIKNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINME 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266
            +  + F+I  +      TV L +   +LL    + +  +         FI+  K++++ 
Sbjct: 189 DIIYDHFNIIGKGN-KERTVYLTNNCRELLDQYILIRNKYIKDLKIDALFISTRKKRISN 247

Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                       KAG +    S H +R  +AT+    G      L    G   +   + Y
Sbjct: 248 RAVQSTIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIY 307

Query: 323 TKGADR 328
           T   D 
Sbjct: 308 THLDDE 313


>gi|69245857|ref|ZP_00603674.1| Phage integrase [Enterococcus faecium DO]
 gi|257879174|ref|ZP_05658827.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257882007|ref|ZP_05661660.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257890004|ref|ZP_05669657.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258615572|ref|ZP_05713342.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260560179|ref|ZP_05832356.1| phage integrase [Enterococcus faecium C68]
 gi|261208049|ref|ZP_05922724.1| phage integrase [Enterococcus faecium TC 6]
 gi|289565520|ref|ZP_06445968.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293563460|ref|ZP_06677908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294615159|ref|ZP_06695043.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|294620828|ref|ZP_06700032.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|68195559|gb|EAN10001.1| Phage integrase [Enterococcus faecium DO]
 gi|257813402|gb|EEV42160.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257817665|gb|EEV44993.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257826364|gb|EEV52990.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260073746|gb|EEW62071.1| phage integrase [Enterococcus faecium C68]
 gi|260077633|gb|EEW65349.1| phage integrase [Enterococcus faecium TC 6]
 gi|289162718|gb|EFD10570.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291591979|gb|EFF23604.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|291599613|gb|EFF30626.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium U0317]
 gi|291604462|gb|EFF33948.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|323481381|gb|ADX80820.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 380

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 4   ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +QI+   G      I+  + +  V+
Sbjct: 64  APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQILPAFGKLKLSNISVPYCQKVVD 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 182

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 242

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362

Query: 327 DRI 329
           +  
Sbjct: 363 NNA 365


>gi|167829962|ref|ZP_02461433.1| phage integrase family protein [Burkholderia pseudomallei 9]
 gi|226199441|ref|ZP_03794999.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225928517|gb|EEH24546.1| phage integrase family protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 350

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 102/328 (31%), Gaps = 20/328 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      R+     +             +         +  +I     + TT+   
Sbjct: 6   KTPSGTWKATIRRVGWPTV-AKTFRTKRDAEDWARRTEDEMVRGVFIQRAPSEKTTVADA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +         +++    +   ++    G +    +T   +    + R     +  
Sbjct: 65  LDRYEREIVPTK-KTSTQRREGARIRELKAHFGKYSLAAVTPDLVGRYRDDRLAQGKANN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF  A+++ ++    NP  ++ +P+      R  +  +     +   + 
Sbjct: 124 TVRLELALLGHLFNVAIKEWHIGLVYNPVANIRKPRPGEGRNRRLSGREQALLLAAIDKH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--- 244
           + P L +   L   +G+R S+        +      ++   T       +P   +     
Sbjct: 184 TNPMLGWIVRLAIETGMRQSEIVGLRRGQIDLERRVVRLTDTKNNAARTVPLTKLAASVL 243

Query: 245 -------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                  +         F       K  A QF+  + A   + G ++   H +R  + + 
Sbjct: 244 QSALANPIRPIDTDLVFFGEPGRDGKRRAYQFTKVWNAIKKQTGLIDFRFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             +AG +  E+ +  G K++     YT 
Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLRRYTH 331


>gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 306

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 68/281 (24%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123
           LK+ I E+++   +  ++  +  ++     +      + +  ++T         ++    
Sbjct: 3   LKFAIKEFQEDREFRQISKATLTNYMGCLKEFHTYCLEKEIIEVTDITSNTIKSYLIYCQ 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----------KTEGIRP 173
           + R + P++    L S+++ F +    E          +                +    
Sbjct: 63  KERGNNPTTINSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVKIEVFSDKQINEM 122

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            +     + +       +       LL +G+R  + C      +      I         
Sbjct: 123 LSYYRRIKTRDKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQTQ 182

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN- 283
           T       +K                             ++       FK          
Sbjct: 183 TSIPMADKLKSELQEYKLFCQKQFGKLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFPN 242

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               A+  R   A      G     L       +    E Y
Sbjct: 243 VRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERY 283


>gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC]
 gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118]
          Length = 302

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 93/276 (33%), Gaps = 25/276 (9%)

Query: 75  ISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126
           + ++     +    +  +  S+ +   +  +         G     +   +     +  R
Sbjct: 8   LDQFISYLQFERYYSKKTISSYATDLHEAKKFWQENGGFAGWKKVTERDIQIYIQHLGDR 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K   SS  + ++S+   +++  R+  V I+P  +V   + + +  + + + +++Q     
Sbjct: 68  KLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKKLPQFFYQPEIKQVFDSL 127

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                   +    FE    +G+R S+     +  +  ++ +I    K      V   D  
Sbjct: 128 QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLKTILVHGKGNKDRYVAFDDRT 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
              L                ++  F++N  + ++        +    +AG+      H +
Sbjct: 188 KNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQYVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G  ++   + YT  
Sbjct: 248 RHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHV 283


>gi|254439723|ref|ZP_05053217.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198255169|gb|EDY79483.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 360

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 105/320 (32%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 28  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 87

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  ++I   +     ++        +I+          
Sbjct: 88  LGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMAVRRHHD 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 146 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 204

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +Q +   +   K G    + +     ++L
Sbjct: 205 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQIQEDRIHLPMTKNGRSFDLPISQLHHEIL 264

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    S           +  + H  R+  AT++ +AG    
Sbjct: 265 APLRPLSRDWVF------PSPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 315

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 316 IVGRLLNHTPLSITGQRYTR 335


>gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
 gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus
           torridus DSM 9790]
          Length = 276

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 88/268 (32%), Gaps = 20/268 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
             I  +         ++N+   ++S     I          I    I           ++
Sbjct: 2   DYIKNFENYMIGERKSLNTIKEYKSLVRDFINYINKKP-EDINDFDIEDYKRHLAVDKRY 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + SS    + ++++  +         I    ++  P+R  +        + +      S 
Sbjct: 61  SKSSQYLSMKAIKLFLQ------SRDIKIPRTLNAPRRNKKIPVYLNTNEAKNLIKASSN 114

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             +       LLYSG+R S+ C   ++ +    NI  +++ K G      +PD   ++L 
Sbjct: 115 NRKHLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSEILR 174

Query: 247 MTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                +  +  +         + + +      K  A +AG+ K  + H +R   AT    
Sbjct: 175 SYYNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATSVLR 234

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G     +    G  +V   + YT   D
Sbjct: 235 NGGDIRFIQQILGHASVATTQIYTHIDD 262


>gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 303

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 103/301 (34%), Gaps = 11/301 (3%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L       +  +  +    TL  ++  YR+S  +  LA +++  +  + D+I  K G   
Sbjct: 4   LALIMKAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAP 63

Query: 111 YRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                       I     +    P +A +   +M  +  WA  +  + +N    + +   
Sbjct: 64  IAAFEDQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHH 123

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLL--YSGLRCSDSCRAGVQHLQNN 220
             +  + W     +  +    +  +      L     L   +GLR  D  R   + +   
Sbjct: 124 VNKADQIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASLTGLRLGDLVRVAWEDVGEK 183

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              + T+K      + +      LL     G      N+  +    +     F+      
Sbjct: 184 AIILTTRKRKGRAIIPILPDLRGLLDSIGTGAGPILRNSRGEPWTESGLGSVFQKAKPD- 242

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G +++ H +R   AT  A  G T  E+  T GW     +E  ++  D  R+ +    R+S
Sbjct: 243 GFDRTMHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLS 302

Query: 341 S 341
           +
Sbjct: 303 A 303


>gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615]
 gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615]
          Length = 324

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 19  RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 76

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 77  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 193 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 251

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 252 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305

Query: 323 TKGA 326
              A
Sbjct: 306 AHLA 309


>gi|307290557|ref|ZP_07570469.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306498412|gb|EFM67917.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315030231|gb|EFT42163.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX4000]
 gi|315144768|gb|EFT88784.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2141]
          Length = 393

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 17  ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 76

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +Q++   G      I+  + +  V+
Sbjct: 77  APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKVVD 135

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 136 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 195

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 196 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 255

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 256 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 315

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 316 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 375

Query: 327 DRI 329
           +  
Sbjct: 376 NNA 378


>gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
 gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254]
          Length = 257

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 15/242 (6%)

Query: 106 SGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               ++ +I  K I   +E+   K   +S ++ +++++  +K+    + V  +P   ++ 
Sbjct: 7   FAQKNFSEIEEKDIFEYIENLNEKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKT 66

Query: 164 PKRKTEGIRPWT---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            KR+       T    + +        EG Q +L  + L+ +G R S++    ++ ++N 
Sbjct: 67  LKREQRLPEILTLKEMKQIVDNCPHTPEGMQNKLIIKILIATGARISETLNLEIKDVENQ 126

Query: 221 IFSIKT------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWF 273
            +          +     I   L +     LA+     +    +          +F    
Sbjct: 127 DYEFIKVLGKGSKYRIIPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREKFWKDL 186

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K  A  A + K+   H  R   ATI    GA    +    G   +   E YT   ++ +L
Sbjct: 187 KTIAKNAKIEKNVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTH-VEKSKL 245

Query: 332 GI 333
            I
Sbjct: 246 KI 247


>gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
 gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A]
          Length = 340

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 101/327 (30%), Gaps = 40/327 (12%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           + F+ A  S  +        + S +   T L  L  +   +        N+  ++    +
Sbjct: 2   TRFLDANRSFTSLENAIGGGMTSDKVSDTKLAALFLDMLAAEQGAG--ENTLDAYRRDLE 59

Query: 101 QIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            +                 T +   + ++ R    SS  + L++MR LF++ + +   + 
Sbjct: 60  DLSAFLARARRSFVIADTQTLRDYLNDLDLRGFKSSSVARRLSAMRHLFRFLLSERVRSD 119

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------------QPRLAFEFLLY 201
           +P   +  PKR     +  +  D+ +  +     +              +     E L  
Sbjct: 120 DPAAILSGPKRGRSLPKILSIADVDRLLARAKADAESPDISPARRLRAARLYCLLEVLYA 179

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT------------ 248
           +GLR S+     +   + +   I  +  G     V L D   + +A              
Sbjct: 180 TGLRVSELVSLPLSAARRDARMIVVRGKGGKERLVPLNDASRQAMANYLVAIDDQRGAGK 239

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                 K  F    D   +    F+   K  A  AG+     S H +R   A+     GA
Sbjct: 240 TAATRPKWLFPSFGDSGHLTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGA 299

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +   + YT   +  
Sbjct: 300 DLRIVQTLLGHTDISTTQIYTHVVEER 326


>gi|269797506|ref|YP_003311406.1| integrase family protein [Veillonella parvula DSM 2008]
 gi|269094135|gb|ACZ24126.1| integrase family protein [Veillonella parvula DSM 2008]
          Length = 403

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 110/381 (28%), Gaps = 60/381 (15%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK    F      ++       ++ +  Y          ++  +    K T LK + + +
Sbjct: 21  GKWRGQFSITKDNQLIRRAFSGNSKLEVYKLGKQWIEATQQNTSIFSSKNTKLKDICNYW 80

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128
            +     S+   +   ++S     I+   G+     IT + +++ + +  +         
Sbjct: 81  LQDVKKVSVKPKTFQKYDSTLRLYILPLLGEIKIASITPQQVQTVLNNWSNGTLKGKKGH 140

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
             + S+       +  LF++AV    +  NP    + P+  T  I   + +++ Q     
Sbjct: 141 IISSSTIRCTRRYLSELFEYAVNIGLLLKNPIKLTKAPRLITTEIHTLSLDEIHQLTSTM 200

Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---------- 223
                      +        +A +  L +G+R  +        +                
Sbjct: 201 KQQVSNNISSPYRINYYSSYIATKIALGTGMRLGEVFGLCWDCVDLIHGHISVRRTIQTG 260

Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269
                   T+   +   + +       L      +  +      +  ++           
Sbjct: 261 TKGQIFQDTKTKTSRRCIPISQELQSELTTYKEFQSNYAKELGDKWTDSYGVVISGTFGK 320

Query: 270 --------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
                   S +F     +  ++  + H +R   AT+          +    G  T+    
Sbjct: 321 ILSTSNFKSRYFIPILKQLNLDHITFHDLRHTHATLLLSQKINPKIVQERLGHSTITLTL 380

Query: 320 ETYTKGA-DRIRLGIKNSRRI 339
           +TY+    D  +  +K    +
Sbjct: 381 DTYSHLVPDIQKEAVKALDNL 401


>gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 304

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKHIRSGV 123
             +         A  +  ++      + R +G+                ++ +    +  
Sbjct: 15  EAFCARLSAEGRATATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSAGAVTES 74

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E    + +S  +   ++R  F WAV    V  NP  S+   +   +     T  + ++  
Sbjct: 75  ERGPRSAASLHRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLL 134

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R   E LL +G+R  +     +  +  +   ++ +  G +  V+  
Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287
              ++ L    + +       + +         ++   Q +        KAG+ K  + H
Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G+R   AT    A      +    G + V   + YT   D      +   R+
Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304


>gi|295108956|emb|CBL22909.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 363

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 104/343 (30%), Gaps = 38/343 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  ++ R            +         + + ++S R     L   I  Y  S     L
Sbjct: 22  GEKKKRRKRGFETKREALEF--------ERSKKLSSERSMDMKLSDFIEIYF-SDKQNDL 72

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVL 143
              +  +        I+   G+    +I    I       +    S          +  L
Sbjct: 73  KDRTIKNKRYMMQQHIVPYFGNQMMSEIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSL 132

Query: 144 FKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F  A +   + +NPC  V+R     +  +  WT ++ +QF      G++  L FE L ++
Sbjct: 133 FTHAAKIYDLPVNPCKKVKRMGNSDSRSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWT 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA 246
           G R  +        +      +   KT                    T+E+P+   + + 
Sbjct: 193 GCRIGELLAITKADINFEKNQLSINKTYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIK 252

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
               G            +         K +   AGV K   H +R        + G    
Sbjct: 253 EFVDGHYGMPDTERLFPVVQEAVQHKMKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPL 312

Query: 306 ELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +    G K +     TY        L     R+I++++D+++
Sbjct: 313 LIRDRLGHKDIRITLNTYGH------LYPNQQRKIANLLDNEN 349


>gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
 gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus
           sp. M334]
          Length = 381

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 116/382 (30%), Gaps = 50/382 (13%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K  T+ G+  Y F+         G  +R                  L     +  + N
Sbjct: 2   IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKVAERDLLLDVEENGFSN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121
           +   +  T   +   +  S    ++   +  + +   D +I     D   ++I+  + + 
Sbjct: 62  NEDFQNPTFAEVAELWLDSYK-NTVKPTTYQNVKKKLDVMIDLYFTDMKIQQISVAYCQK 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179
                 +       + + +  +FK+    + +  NP   + +PK +        +TK+++
Sbjct: 121 VAIQLSNRYILYANYYSVISRIFKYTTSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQEL 180

Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------- 223
            +F   +           F  L +SGLR  ++       +                    
Sbjct: 181 TEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVVNKKQ 240

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTP---------------IGKETFFINNDKQKMNA 266
                +   +   + L D  + +L                         F N+    ++ 
Sbjct: 241 TVQDPKTKMSKRVITLDDETLNVLKFWKRQQIKEYFRASVPYKHDSNYIFTNSFGGWISP 300

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           +      +    +       + HG R   A++  +AG TA  +    G   V    + YT
Sbjct: 301 SAVKERLRRFFYEHKDVKKITPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYT 360

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
              D  R  ++   ++ + + S
Sbjct: 361 HINDNQR--VEVVDQLMTFIRS 380


>gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
 gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC
           35098]
          Length = 329

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 52/306 (16%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---------RKITTKHIRSGV 123
           ++++Y         L+ N+   +    + +IR                 +   + I   V
Sbjct: 9   ILTDYLNYLKSIRGLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDEQFDPESINKIV 68

Query: 124 ESRKHT---------------------PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSV 161
           + +                         S+  + ++++R  +K+     E +  N    +
Sbjct: 69  DPKFFETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEIEVIDTNISDKL 128

Query: 162 ERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             PK         T ++ ++               +        L +G+R S+     ++
Sbjct: 129 TNPKISQRQPVYLTLQETEKLLETVKGEQNEFLKCRDLAIIFTFLTTGMRLSELVSVNLR 188

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNA 266
            + N+ F+I  +      T+ L    + L+      +  +         FI+  K++++ 
Sbjct: 189 DISNDHFNIIGKGN-KERTIYLTSNCIDLIEKYIEVRGKYVKNIDIDALFISTRKKRISN 247

Query: 267 TQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
                       KAG + S    H +R  +AT+    G      L    G   V   + Y
Sbjct: 248 RAVQSTIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIY 307

Query: 323 TKGADR 328
           T   D 
Sbjct: 308 THLDDE 313


>gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 389

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 103/380 (27%), Gaps = 60/380 (15%)

Query: 16  TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            ++G   +           G+RI L   +  +   A            +   +   K   
Sbjct: 8   KKNGTNYFRVSAVLGTDSKGKRI-LKEFYGKSKSEAEEKKRE-YLEGIKNGLNIDTKRVL 65

Query: 71  LKWLISEYR-KSAHWG-SLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR 126
           L  LI  +  ++      +   +   +E  +   ++          ++    ++      
Sbjct: 66  LGELIHTWLFETIRVSDRIKPTTFEKYEGLYRNYVKDSPLYSIKLSELKALQVQRYYNGL 125

Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQ 180
                S          ++  F +AV + Y++ NPCL  +      +  R   +       
Sbjct: 126 SDIGKSRNLIENLNKLLKQFFNYAVDEGYLSKNPCLGKKIVIPGEKKPRKEVQHFSDEEI 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      + ++ R      L +GLR  +      + +      +K  K+   + +   DG
Sbjct: 186 EILVSNLKDNRYRELILLSLGTGLRRGELLALTWEDIDLKNKIVKVNKSLAKVYIIAGDG 245

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF------------------------------- 269
             +   +  + K    I       N T                                 
Sbjct: 246 SKERKQIIQVPKTRGSIREVSFPDNLTSIFKDIRIKQRRDRLKCGESYEVSDHVFTTSSG 305

Query: 270 --------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   S  ++    K  +  K  H +R   AT   +       +    G  ++D   
Sbjct: 306 SLIDVTNLSHAWEHLLKKCKLPHKKFHALRHTFATKLFENEVALKTVSELLGHSSIDMTA 365

Query: 321 -TYTKGADRIRLGIKNSRRI 339
            TYT    + +       ++
Sbjct: 366 NTYTHVIPKQK--SDAVEKL 383


>gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii
           DSM 18315]
          Length = 327

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI  +  +      +  S   + S  +  IRK G  + R ITT  +R+ +   + T  
Sbjct: 50  SELIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKIG-KNIRHITTDDLRNYLNDYQQTSG 108

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    
Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           EG +     + L  +G+R  +  +     +       I T K      V         L 
Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARAKIHLQ 227

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +                ++  +   I  +    +  + K   H  R+  AT++ D
Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G +++D    Y 
Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311


>gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg]
 gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss]
 gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum
           MopnTet14]
 gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC
 gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum
           Nigg]
          Length = 315

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 43/301 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-------DYR---------- 112
           +    +  Y K+      + ++  ++      +                           
Sbjct: 4   SFYAFLD-YLKNMKAA--SPHTLRNYSIDLSSLKCFLEKKGELTPTPPLSLQEDSRSSSQ 60

Query: 113 ----KITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                 T ++IR  +  +    H+  +  + L++++   K+ V+ +++  NP   +  P+
Sbjct: 61  LSFSLFTKENIRLYLLEQIQTTHSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPR 120

Query: 166 RKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              E   P T E +    S        G + R   E    SGLR S+        +    
Sbjct: 121 LPKELPSPLTYEQVLALMSAPDLDKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQS 180

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSI 271
             ++          V +    ++ L                +  F+N   ++++      
Sbjct: 181 NLLRICGKGKKERIVPMTKVAVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDR 240

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            F+    K G+    + H +R   AT   + G     +    G  +++    YT  + ++
Sbjct: 241 KFQQYLLKTGLSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKL 300

Query: 330 R 330
           +
Sbjct: 301 K 301


>gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 323

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 44/303 (14%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR 126
            ++  + S Y +       L+ ++  ++     Q +  +G       I  K +    +  
Sbjct: 2   DSISRIASRYLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKTSVNAIDKKDLHKFHDYL 61

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182
             +    SS  + L  +R +F+W  ++E + + P        K      R   K D+++ 
Sbjct: 62  ADSELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNTSIKLPKRLPRNVNKSDLKRM 121

Query: 183 KSFWSEGSQPR---------------------------LAFEFLLYSGLRCSDSCRAGVQ 215
            +        +                           LA E +L +G+R S+     + 
Sbjct: 122 LTQGRRTLDQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQLD 181

Query: 216 HLQNNIFSIKTQKTGTIITVEL---------PDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            +      IK    G+                  + K   +       F +N+  Q  + 
Sbjct: 182 DIFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVESDSSNFLLNSRGQPAST 241

Query: 267 TQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +  A ++   ++ + H +R  +A    ++G     +    G  ++   E YT 
Sbjct: 242 QFIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTH 301

Query: 325 GAD 327
             D
Sbjct: 302 VTD 304


>gi|163813874|ref|ZP_02205268.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759]
 gi|226322754|ref|ZP_03798272.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758]
 gi|158450744|gb|EDP27739.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759]
 gi|225208915|gb|EEG91269.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758]
          Length = 363

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 104/343 (30%), Gaps = 38/343 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  ++ R            +         + + +++ R     L   I  Y  S     L
Sbjct: 22  GEKKKRRKRGFETKREALEF--------ERSKKLSNERSMDMKLSDFIEIYF-SDKQNDL 72

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVL 143
              +  +        I+   G+    +I    I       +    S          +  L
Sbjct: 73  KDRTIKNKRYMMQQHIVPYFGNQMMSEIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSL 132

Query: 144 FKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F  A +   + +NPC  V+R     +  +  WT ++ +QF      G++  L FE L ++
Sbjct: 133 FTHAAKIYDLPVNPCKKVKRMGNSDSRSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWT 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLA 246
           G R  +        +      +   KT                    T+E+P+   + + 
Sbjct: 193 GCRIGELLAITKADINFEKNQLSINKTYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIK 252

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
               G            +         K +   AGV K   H +R        + G    
Sbjct: 253 EFVDGHYGMPDTERLFPVVQEAVQHKMKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPL 312

Query: 306 ELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +    G K +     TY        L     R+I++++D+++
Sbjct: 313 LIRDRLGHKDIRITLNTYGH------LYPNQQRKIANLLDNEN 349


>gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99]
 gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99]
          Length = 308

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 87/279 (31%), Gaps = 24/279 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH- 128
              Y +S     L+ ++  ++     ++  K  +     F + +++ + I+  +      
Sbjct: 9   FESYCRSE--RQLSAHTVRNYLYELHRVSAKLEENACLSFLWSEVSHEQIQHVLGQLHRQ 66

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P S    L++++    + + +  +  NP  S+  PK+     +    + +       
Sbjct: 67  GLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSVTHLLEID 126

Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242
           ++     + +   E    SGLR ++     V  ++          K      V +    +
Sbjct: 127 ADDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQVKVLGKGSKERIVPVGRCAI 186

Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFS 293
           + +      +E+    ++   +                          +    H +R   
Sbjct: 187 QAIQAWLALRESILCQDEALFVTAKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSF 246

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AT   ++ A    +    G   +   + YT   D   L 
Sbjct: 247 ATHMLESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 284


>gi|78485001|ref|YP_390926.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363287|gb|ABB41252.1| Phage integrase [Thiomicrospira crunogena XCL-2]
          Length = 372

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 112/370 (30%), Gaps = 41/370 (11%)

Query: 1   MTPSLR-----LPPFVTKERT-RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTG 53
           M+P  R     LPP +  ++  R+GK+ Y ++    G+              A       
Sbjct: 1   MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60

Query: 54  STPKREYINSPRKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
               ++      KKP     +     Y  S +   L  N+  + +S ++      G+   
Sbjct: 61  YDAIQKSRVEKLKKPACILFRDFWQIYFDSMNDRKLKPNTIKTRKSQYEACYPFIGNTPL 120

Query: 112 RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++  K +   +     +    +A    ++++  FK A+ Q  V  NP      P    +
Sbjct: 121 NEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVEDNPAEKTRAPSVPVK 180

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R     D        ++ +    A    L +G R SD  +   +        +  +K 
Sbjct: 181 RQRF--NLDQVLKVLEINKETWLENAILLALITGQRVSDIAKMKFKDFDGEYLYVIQKKN 238

Query: 230 GT----IITVELPDGFMKLLAMTPIGKETFFINN---------------------DKQKM 264
                        D  +  L+MT         +N                       ++ 
Sbjct: 239 RQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGLAKKGTSCHEQT 298

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +F+   +       +  + H +R  SA     A     E     G K+    E YT 
Sbjct: 299 ISKRFTWLVREVVDGQNLP-TFHELRSLSA-RLYKAQGNISE-QKVLGHKSAKSTEIYTD 355

Query: 325 GADRIRLGIK 334
                 + ++
Sbjct: 356 ARGSEWVAVE 365


>gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 409

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 105/396 (26%), Gaps = 56/396 (14%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMS------------ 49
           P +R     T++  R     +  R    G+ +       S    A  +            
Sbjct: 10  PGVRFREHETRKDNRRPDRYFSIRYRCRGKNMEEGIGWASEGWTAEDASRILGEIRQNIR 69

Query: 50  -------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQ 101
                      +   R   ++    P T   L   Y     W     +S    E     +
Sbjct: 70  RGTGPQSLRDMARAARGEADAAEAAPLTFGELARRYLD---WAKRNKSSWKEDEYLLAKR 126

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKW---------AV 148
           ++          +T        ++       +P +    L  +R ++ W           
Sbjct: 127 VLPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVIRRVYNWAASTPVADDPG 186

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCS 207
              +   NP   +  P    E IR  T+E+  +      E            L +G+R  
Sbjct: 187 HMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLPEMHDIILLALLTGMRRQ 246

Query: 208 DSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--DK 261
           +      Q +    +      +  +        L +    +L       ++ F+      
Sbjct: 247 EILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQARREHAQSPFVFPGAVD 306

Query: 262 QKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYG 312
            + +    +  F A     G+             H +R   A+  A AGA  H LM   G
Sbjct: 307 GRRDPDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFASWLAQAGADIHHLMELTG 366

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            K++   + Y                + S   S  P
Sbjct: 367 HKSISTMQRYAHLMPGKTRA---IASLVSRRASPAP 399


>gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6]
 gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6]
          Length = 295

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 28/281 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS---SAIQFLT 138
            +L+ ++R ++    + ++  +   G  +   +    +R  + ++  + +   +  +   
Sbjct: 12  RALSPHTRRAYLGDLESLLAFAASEGAAELEDLELGTLRRWLGAQSQSGAARATLARRSA 71

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190
           ++R    WA+R+EY+  +P L ++ PKR+           +++      +G+        
Sbjct: 72  TIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLLKELEDGAADGDPMAV 131

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           + R   E L  +G+R  +     V +L  +  +++         TV         +    
Sbjct: 132 RNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWL 191

Query: 250 IGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                    +              ++  Q            G       H +R  +AT  
Sbjct: 192 RRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDTSASGPHALRHSAATHL 251

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            D GA    +    G  ++   + YT    DR+R   + + 
Sbjct: 252 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 292


>gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
 gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum
           CFBP2957]
          Length = 329

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 89/298 (29%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y     +   L+ ++  ++      +     R +   D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFAAGVDLTRLLPHHIRSMIAHLHGN 79

Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E        
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 E  + R   E     GLR S+     ++H++   ++           V +    
Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199

Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276
            K   +    K    +                              ++   Q  I  K  
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAVRPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|291536854|emb|CBL09966.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 398

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 116/371 (31%), Gaps = 46/371 (12%)

Query: 7   LPPFVTKERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +P +   + ++ G     F      G  ++I+            Y         +   I 
Sbjct: 1   MPAY---KDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDY--------ERNYKIR 49

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
                  T       Y +      + +N+ ++ E   D +I+    +    +IT   +R 
Sbjct: 50  QENNLDMTFGEFWKLYTEDVK-NYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRK 108

Query: 122 GVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGI 171
                          ++ +        +  +F  A R   +  NP        + + + +
Sbjct: 109 WQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEM 168

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             WT E+ ++F     +      AFE L ++G+R  +     ++       +++  K+  
Sbjct: 169 LFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQ 228

Query: 232 I----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                             T++LP    + +             +    +  +      + 
Sbjct: 229 RLQGQDVITTPKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMER 288

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
               +GV K   H +R    +   D G +A  +    G +++D    Y+      ++ + 
Sbjct: 289 GCKLSGVKKIRIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVAM- 347

Query: 335 NSRRISSVVDS 345
            + R+ +V  S
Sbjct: 348 -ADRLDAVNAS 357


>gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
 gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P]
          Length = 301

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 81/262 (30%), Gaps = 22/262 (8%)

Query: 85  GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
              + ++ I++                      +    +R  + S      + S+  + +
Sbjct: 19  KGYSKHTIIAYRKDLIDFSSFCALHFDQESITVVAYAQVRRWIVSLVAADISNSTINRKV 78

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192
           +S++  +K+  +   +  NP    +  K       P+T +++             E  + 
Sbjct: 79  SSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINAVLENMAGGQNFEACRN 138

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           RL  E L  +G+R ++        +   +       K      V +    ++ +      
Sbjct: 139 RLLVELLYSTGMRRAELISIQEVDVNCADQTIKVVGKRNKERYVPILSSVLQTIKEYQGL 198

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302
           K T    +    + +               +      + V KS H +R   AT   + GA
Sbjct: 199 KATIDGGSGFFLITSKGNKLYETLVYRIINSYFSKISSKVKKSPHILRHSFATHLLNEGA 258

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             + +    G  ++   + YT 
Sbjct: 259 DLNSVKELLGHSSLASTQVYTH 280


>gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
 gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580]
          Length = 297

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSA 133
           Y  SA     A  +  ++ +      ++ G                         T  + 
Sbjct: 12  YLISAEAR--AQLTAKTYINTMRLFQQQLGSERLIEDASADDCIGFLLARAEEGITGRTL 69

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            +   ++R  +++   +   A NP   +E P+R+    R    +++ +  +     +   
Sbjct: 70  AKDQAALRSFYRFLQLENVRADNPAEQLESPRREKNLPRALELDEVDKLLAAIPLDTPNG 129

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT 248
            + R  FE +  +GLR S++    ++ +  N        K G    V       + L + 
Sbjct: 130 IRDRALFELIYSAGLRVSEAVTLSLEDIFFNEQLLKVRGKGGKERIVPFGAQAEERLTVY 189

Query: 249 PIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                                  F+N+  +++         +     +GV    H +R  
Sbjct: 190 LKTARPLLLKPAHSENTETTGAVFLNHHGERLTRKGIWKRLQEIEQLSGVTTKIHTLRHS 249

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT     GA    +    G  ++   + YT   D+
Sbjct: 250 YATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDK 285


>gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 383

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 117/377 (31%), Gaps = 39/377 (10%)

Query: 4   SLRLPP--FVTKER-TRHG--KIIY--YFRKGHGRRIRLPYPHESTFIPAYMS------- 49
             R P   ++ + R  +HG  K  Y  Y R G  + I  P   ES+ + A  +       
Sbjct: 8   KTRYPGVYYIFQRRLDKHGVEKTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLR 67

Query: 50  ----ALTGSTPKREYINSPRKKPTTLKWLISEY-RKSAHWGSLA-VNSRISFESYFDQII 103
                L+    +++     + +  TL+ +  +Y    +   SL    SR+ + S      
Sbjct: 68  AIGKELSNVEKRKKEKEKQQNQKVTLQTIWDKYQLIYSEKKSLKQDISRVKYLSDLMHKS 127

Query: 104 RKSGDF-DYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                  D   +  K   +       +  P+S    L  ++ L  + +++        L 
Sbjct: 128 PDILTTNDIDTLRKKLTLTKSSKGGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLY 187

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++ PK   +     +K  ++                     L +G+R S           
Sbjct: 188 IDMPKVDNQKTEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCD 247

Query: 219 NNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                I       K G    + + +    +L   P G   F           T      K
Sbjct: 248 FENNIITLSGNYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTYNQRLIK 307

Query: 275 AKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIR 330
               KA + K     HG+R   A+  A +G    + +      +T    + Y        
Sbjct: 308 RIKEKAKLPKDFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAH------ 361

Query: 331 LGIKNSRRISSVVDSDD 347
           L     ++ ++++D + 
Sbjct: 362 LHNDALKKAAAIIDDEF 378


>gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/395 (13%), Positives = 106/395 (26%), Gaps = 64/395 (16%)

Query: 10  FVTKERTRHGKII--YY----FRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60
            + + +T+ GK+   ++    ++   GR  R+      +       Y   +  +     +
Sbjct: 4   RLRQWKTQEGKVQEAWWVDVKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTF 63

Query: 61  INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                     TL   +  +   +   +   +S ++ +   D  +I   G+     I    
Sbjct: 64  GKENGAGRVLTLGEFVPRFLTYSENNN-KHSSVVTKQQILDDHLIPAFGNMPLDAIGPAE 122

Query: 119 IRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVR 149
           I     + +  PS                             S    LT +  L   A  
Sbjct: 123 IEDFKAAMRKKPSGARARKETPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQE 182

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           Q  +   P         KT+          +  +   +   + R      L +GLR  + 
Sbjct: 183 QGVLQHVP----RVKLFKTDKPAFDFLSFEEAERMSNAAEPEWRTLILVALKTGLRLGEL 238

Query: 210 CRAGVQHLQ-----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFI 257
                  L                 +   K G   TV+LP   ++ L           F 
Sbjct: 239 IGLQWADLDLQRGKLNVRRTIWRDVVGLPKGGRERTVDLPTSTVEALKAHRHLCGPYVFC 298

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYG 312
             D + + A            +AGV++       H +R    +  A  G     +    G
Sbjct: 299 QTDGRPLTAGMTKHPLLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMG 358

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             T++    Y   +   R      + +   +    
Sbjct: 359 HATIEMTMRYAHLSPEAR--ESAVQELDRPIPQPR 391


>gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004]
 gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004]
          Length = 354

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 90/324 (27%), Gaps = 24/324 (7%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  +GK +   Y    +GRRIR  +  +   I      L  +  K       ++    L 
Sbjct: 5   KQPNGKWLVELYPNGRNGRRIRKQFTTKGEAIACERHILDETVEKP--WLGEKQDKRLLS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGVESR 126
            LI  + ++     L+         +F         + +  +  +     K +    +  
Sbjct: 63  ELIDIWYRAHGIT-LSDGEHRKKRMFFACKEMDHPFVTEFDNKLFSIYREKRLNGYADKL 121

Query: 127 KH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K   PS+    L   R +F    R         L   R     E    +           
Sbjct: 122 KPVAPSTVNNELAYFRAMFNELHRLGEWKAGNPLKNIRAFNTGEKEMAFLSNQQIITLLN 181

Query: 186 WSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +   S+ +   +  +  L +G R S++       +     +    K     TV +     
Sbjct: 182 FCAKSRAKDLLIIVKIALSTGARWSEAAGLTDSQITPYKITFTKTKGKRNRTVPITKELY 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
             +        +              F    K    +   ++S+H +R   A+    +G 
Sbjct: 242 DEIPKRKGKLFSSC---------YNAFRTAVKQAGIELPSHQSSHVMRHTFASHFMMSGG 292

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               L    G   +     Y   A
Sbjct: 293 NIIVLQRILGHTDIKMTMRYAHFA 316


>gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
 gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria
           bacterium BBFL7]
          Length = 295

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 23/275 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVE---SRK 127
           +  Y     +    + N+  ++E   +Q      D    + +  +   IR+ +     ++
Sbjct: 3   LKSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLMDEYDLEIQNASYPIIRTWLALLLDQQ 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +  + + +++  FK+ +  E +  +P  + +  K       P++K+++QQ  +   
Sbjct: 63  LSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEVQQILNASY 122

Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL---- 237
                E  +  L  E    +G+R  +     ++++   +       K      + +    
Sbjct: 123 DSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKERLIPMLESV 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRK 291
                  L +    +          +     +                  V  S H +R 
Sbjct: 183 KFKVEAYLLLKESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQKVKTSPHILRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             AT   D GA  + +    G  ++   + YT  +
Sbjct: 243 SFATHLLDEGADLNAVKELLGHASLASTQVYTHSS 277


>gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
 gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC
 gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7]
          Length = 299

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 90/275 (32%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130
              Y +S     L+ ++  ++     +      +  D   +  +H +  +        +P
Sbjct: 12  FETYMQSE--RQLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S   +L++++   ++ +R   + +NP   +  PK+     +    + +    +      
Sbjct: 70  RSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDP 129

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q +   ++   K      V +    ++ ++
Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAIS 189

Query: 247 MTPIGKETFFINND-------KQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                ++     ++        ++++                  +    H +R   AT  
Sbjct: 190 AWLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++ A    +    G + +   + YT   D   L 
Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283


>gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
 gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 28/299 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131
           +  + +        A+N+  ++    D +            + + + + + +        
Sbjct: 6   VDAFLEMLAAERGAALNTLKAYRRDLDDLGTALAVEGASLPQASARQLGAYLSGLAQAGL 65

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           SA    + L+ +R  + + VR+     NP   +E P+      R  ++ D+    +    
Sbjct: 66  SARTQARRLSCLRQYYLFLVREGRRPDNPASMLEAPRLGATLPRFLSEGDVDALLAACVA 125

Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVE 236
            +             R A E L  SGLR S+          +     +   K G    V 
Sbjct: 126 RADAGAHEVRRMLVARTALEILYASGLRISELLSLPRAALERTTGMLLVRGKGGRERMVP 185

Query: 237 LPDGFMKL---LAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAH 287
           L          L        + F+   +     M    F       A KAG++    S H
Sbjct: 186 LSSRARDAADELMRMDRPLRSMFLFPGRNPLRAMTRQGFDRILHDVALKAGLDPQRLSPH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345
            +R   AT     GA    L    G   +   + YT    +R++  +++   +S    +
Sbjct: 246 VLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHPLSEHAPA 304


>gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
 gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58]
          Length = 338

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +       G+R R            + + +     ++   N  ++    L  LI  +
Sbjct: 9   GRWLADVEPIKGKRFRKR-FKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQ 135
                    ++ S    ++    I  + GD   ++ TT  +   R         P S   
Sbjct: 68  Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQ 191
             + ++ +F    R   +     L   +P +  + +  +  +D                 
Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L  E  L +G R S++    +  +++        K+  + +V +       L     G
Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
           +  F             F+   K         +  H +R   A+     G     L    
Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297

Query: 312 GWKTVDQAETYTK 324
           G  +++    Y  
Sbjct: 298 GHSSLNMTMRYAH 310


>gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii
           ATCC 12478]
          Length = 302

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 28/294 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
             ++ E+          + ++R ++      +     D       ++   +R+ + S   
Sbjct: 6   DAILEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRGSALETLSLPLLRAWLASASG 65

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  +  ++++    WAVR+  +  +P   ++ PK          ++      + 
Sbjct: 66  AGVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
              G         + RL  E L  +G+R S+ C   +  +      ++   K     TV 
Sbjct: 126 AKSGAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQRTVP 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------------NK 284
                 + L           +  +                     V            + 
Sbjct: 186 YGRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNGAPDI 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             HG+R  +AT   + GA    +    G  ++   + YT  A +R+R     + 
Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAH 299


>gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
 gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus
           H3081.97]
 gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH187]
 gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-ST26]
          Length = 369

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + ++ +      +  ++  S+ S     II   G     K+   HI+   +S     
Sbjct: 66  KDYLVQWLEIKKMC-VEKSTFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYKSALDNG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S    L     ++     AV+Q  ++ NP   VE PK++   I+ WT+E++++F     
Sbjct: 125 VSNNSILLLHRILKTALNLAVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKRFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  +A+   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIAYLIAITTGMRLGEVLGLRWQDVDFRNHTVTINQTVGGDDKVKNTAKTNASKR 243

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFSIWFKAKATK 279
           T+ +P   ++ +    I      +       +                 F   F  +   
Sbjct: 244 TIPVPVETIEAIKKHRIQINKEKLRMGSAYQDLDLINCNESGGVLKRDAFRRKFYKEINN 303

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337
           A V K   H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 AKVKKIKIHDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC
           23457]
 gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3
           str. Ether]
 gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457]
 gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28]
 gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90]
          Length = 307

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|170701053|ref|ZP_02892031.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170134033|gb|EDT02383.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 332

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 93/328 (28%), Gaps = 19/328 (5%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +     R          +P        +  A+     +  ++++   + TTL  L+ +Y 
Sbjct: 15  RWQAKVRLKGFPAQSKSFP-TKVQAEDWARAVETEMRRGTFVDTAAARETTLGDLLQKYA 73

Query: 80  KSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136
           +       +        +S           +    IT   +    + R    + S+  + 
Sbjct: 74  ERVSPTKKSGAGEAKRIQSMLKWF---LCKYAVVNITPAVLAEWRDERLQSVSGSTVNRE 130

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQP 192
           L  +  +F  A+ +  + +         + K    R    E  ++    ++   +     
Sbjct: 131 LNLLSHVFSTAMIEWDIHLPVNPVSRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHL 190

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             A    + +G+R S+       ++             +              A      
Sbjct: 191 YPAVLLAIETGMRRSEVVGIEWPNIDLKRR--VLWLPDSKNGEGRAVALSTRAAQALAAI 248

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
            T         +        ++    +A ++    H +R  + +   + G    E+ +  
Sbjct: 249 ATDRNGPVFPGLTVDAIKCAYRRARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASIT 308

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G KT+   + YT            ++++
Sbjct: 309 GHKTLSMLQRYTHL-----RAEDLAKKL 331


>gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 319

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 31/288 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128
            + Y          +  +  ++     Q                 +T +  R  +     
Sbjct: 18  AAAYLDHLRVEKGYSPATLAAYAEDLAQFEESLAGRGLTLAAPGAVTLEAARGFLAELHR 77

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------TK 176
                SS  + L+++R LF +  R++ V  +P   ++ PK      +           T 
Sbjct: 78  RRVAKSSMGRKLSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTP 137

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
                      E  +     E L  SGLR S++    V  L  +   ++           
Sbjct: 138 GPESPAADGSREACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLA 197

Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
                           +        +  FF+     +++  Q +    A A  AG+  + 
Sbjct: 198 PLSDAARVRLGEYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHA 257

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             H +R   AT   ++GA    +    G   +   + YT   D  RL 
Sbjct: 258 HPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH-LDLARLM 304


>gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
 gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum
           UW551]
 gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum
           IPO1609]
          Length = 329

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 89/298 (29%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y     +   L+ ++  ++      +     R +   D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79

Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E        
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 E  + R   E     GLR S+     ++H++   ++           V +    
Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199

Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276
            K   +    K    +                              ++   Q  I  K  
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
 gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium
           Broad-1]
          Length = 320

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 88/295 (29%), Gaps = 29/295 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRK 127
             L+ +Y +       L+ ++  ++      ++  +G     D   I  + +RS +  ++
Sbjct: 23  AALLGDYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGRTDPEGIDLRTLRSWLAKQQ 82

Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTK 176
            T  S     +  T+ RV   W VR     ++   ++  PK                   
Sbjct: 83  TTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVESLIA 142

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
             +   +   + G +     E L  +G R  +     +  +      ++   K      V
Sbjct: 143 AAIAAAEDGTAVGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRKERMV 202

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG--VN 283
                  + L    +      +                 +          +        +
Sbjct: 203 PFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLDQRAVRTLVHRRLADVPGAPD 262

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              HG+R  +AT   + GA    +    G  ++   + YT   +DR+R   + + 
Sbjct: 263 LGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAH 317


>gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
 gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas uenonis 60-3]
          Length = 403

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 106/301 (35%), Gaps = 26/301 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE 124
           L+  +  + +      + +  +  ++    +  +       + ++         +R+ + 
Sbjct: 6   LEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLVRNWIM 65

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +     + ++  + L+++R  +K+   + +V  NP   ++ PKR+       T+  +++
Sbjct: 66  QQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQAQIEE 125

Query: 182 FKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
             +     +      + RL  E +  +GLR ++      Q +     S++          
Sbjct: 126 ALATIPIETDNFLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKGRKERI 185

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKS- 285
           V       + +      ++     +    +         A  + +  KA +   G+ +  
Sbjct: 186 VPFGTDLREKMQDYITLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPGLPRRG 245

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344
           AH +R   AT   +AGA    +    G   ++    YT    ++++       R  S V 
Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQVS 305

Query: 345 S 345
           S
Sbjct: 306 S 306


>gi|299136538|ref|ZP_07029721.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601053|gb|EFI57208.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 381

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 108/365 (29%), Gaps = 42/365 (11%)

Query: 11  VTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V +   ++G  ++ FR       GRR+       +    A  +A+  +T    Y  + R 
Sbjct: 6   VIQMTRKNGPGVWQFRWSDKDLNGRRVYHRQVIGTIDQYADEAAVRHATLPLIYEVNSRS 65

Query: 67  K-----PTTLKWLISEYRKSAHWGS----LAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                   T+  L   + +   + S     +V +  ++  Y  + I  + G     +I  
Sbjct: 66  PHDHVGAITVDQLCEHFEQ-WEFRSSISLRSVATIKTYRGYIRRWIRPQWGSRKLDEIKA 124

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + + S      S  +  + + +LF  A R E    NP   V +  ++       T 
Sbjct: 125 TDVEAWLRSLNLARGSRSKLRSILSILFNHACRHELFDHNPIRFVRQGAKRLHTPDVLTG 184

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSI 224
            +++      S   + R        +GLR  +      + +                   
Sbjct: 185 SEIK--LLVESLPLRERTLVLLAASTGLRQGEIFGLKWRDVDFEHGELNVIRSMVCGVVG 242

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFK 274
             +   +   V L       L            ++                      + +
Sbjct: 243 ACKTESSQRPVPLHHRLAAALLAWRPNCNFKTQDDWVFASRLHNGRKPYWGPVILRKYIQ 302

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
             A K G++K    H  R+  AT+    G     +       ++    + YT+     + 
Sbjct: 303 PAAQKLGIHKQIGWHTFRRTYATLLRSLGVEFKVMQELMRHSSLRTTLDVYTQAVGPAKR 362

Query: 332 GIKNS 336
             + +
Sbjct: 363 AAQAA 367


>gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 296

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           +  + +        + ++  S+    +             +Y ++  K IR+ + +    
Sbjct: 2   VDRFLEYIAVEKRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYVEVDKKIIRNFMAALGEK 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R  + + ++   V  +P  +++  K   E   P++ ++M   +   
Sbjct: 62  AIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMNDLQKEE 121

Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
            +  +      L  E L  +G+R ++     + H+      +K          V + D  
Sbjct: 122 FQPLKTNFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQRIVPVSDDL 181

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKA--TKAGVNKSAHGVRKF 292
              L      ++          ++A                      +   KS H +R  
Sbjct: 182 CAQLEQYLEFRKPLKEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSKKKKSPHILRHS 241

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA   ++    G K++   + YT
Sbjct: 242 FATHVLEEGAEISKVKLLMGHKSLASTQVYT 272


>gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
 gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 90/298 (30%), Gaps = 39/298 (13%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRK 127
             +  Y  +      LA  + +S+     +++  +           +T   IR       
Sbjct: 8   AYLDGYLDNLISQRQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAAQLH 67

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S  + L++ R  F W   Q  +  NP   ++ PKR     +    +D  +  +
Sbjct: 68  AQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVA 127

Query: 185 FWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGV------------QHLQNNIFSI 224
             + G              FE L  SGLR S+     V                +    +
Sbjct: 128 EHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHEVM 187

Query: 225 KTQKTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAK 276
            T K   + TV +    M  L            +     F++    +++A    +  KA 
Sbjct: 188 VTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPHPLFLSERGTRVSARVVQLRLKAH 247

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               G+      H +R   A+    +      +    G  ++   + YT   D  RL 
Sbjct: 248 GQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYT-SLDFQRLA 304


>gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str.
           513]
 gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M163/99/10]
 gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           B2/94]
 gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis
           M292/94/1]
 gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33]
 gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1]
 gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94]
 gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915]
 gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99]
 gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840]
 gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445]
 gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915]
          Length = 307

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
 gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638]
          Length = 263

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 17/245 (6%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + G   ++ +    +RS V   K      SS    L+++R    W V Q  + +NP   
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  P+      +    +++ +            + R   E +  +GLR S+      +H+
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124

Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269
              +       K      V +    +K L              +  F+ N  ++++A   
Sbjct: 125 DLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLELRELFEPQDDAIFLANTGKRISARNV 184

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              F     K GV  +   H +R   AT   ++      +    G   +   + YT   D
Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243

Query: 328 RIRLG 332
              L 
Sbjct: 244 FQHLA 248


>gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2]
          Length = 292

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 89/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
             L+ ++  ++++  +Q+           +    T+K +RS +           S  + +
Sbjct: 13  KRLSSHTICAYQTDLNQLFSYLQTNFQIAELSHATSKLLRSWIMELAKQGLNNRSINRKI 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192
            S++  + +  ++EY+  +    +   K K        ++++             EG + 
Sbjct: 73  ASLKAFYGFLYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLLDEHPFTDDFEGWRA 132

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251
           RL  E L  +G+R  +      + +     +I+   K      + LP   + ++      
Sbjct: 133 RLILELLYSTGIRLQELINLQDRDINFYDRTIRVLGKRNKERILPLPKHILPIIEGYLQQ 192

Query: 252 KE--------TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301
           +          FF+  + +           K+           S H +R   AT   + G
Sbjct: 193 RNTIIANAPAHFFVTTNNKPCYPMLIYKLVKSYLASYTQADRHSPHILRHTFATHLLNRG 252

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A    +    G  ++   + YT  +   
Sbjct: 253 ADLQAIKELLGHTSLAATQVYTHNSMEK 280


>gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp.
           NBC37-1]
 gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp.
           NBC37-1]
          Length = 379

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 104/377 (27%), Gaps = 41/377 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYY--FRKGHGRRI-----RLPYPHESTFIPAYMSALTGS 54
               R+   + K     G+IIY   FR   G+       R        +   Y S +   
Sbjct: 5   RKRERVATGIYKRIDAKGEIIYDINFRDEFGKNKFLKVGRKSDGVTVAYCKQYRSKIINM 64

Query: 55  TPKREYINSPRKKP-TTLKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDY 111
               E +++ RKK   T   +  +Y +   +       +    +    D I    G    
Sbjct: 65  KYLGEDVSNIRKKSSITFDDITEDYFEYVKYADFKEPQSFANRYR---DHIKDSLGHLPV 121

Query: 112 RKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             IT   I + +   K     P++  +    +   F  A+ +E    NP           
Sbjct: 122 ESITKNDINNLIMLLKDKNLAPATIDRIRQQVSATFNVAIGKEKCRNNPASVSRVDSSSL 181

Query: 169 EGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
             +   +  + ++      E +                    L +G R  +  +   + +
Sbjct: 182 MRLNKKSINNARERYLSKDEANLLLSELKLRRFDVYFMALLALTTGARAGEILKIQYKDI 241

Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
              N   ++   K G+   +++      +L          ++    +  +       +  
Sbjct: 242 DLENRYINLVETKNGSSRKIKITSKVYDILNEIEFESPNKYLFAGSKHDHLQAIPNIYSI 301

Query: 276 KA----------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                                H +R   A+  A  G     +    G K ++    Y K 
Sbjct: 302 IVGELFNSELDSRDTKHRVCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKL 361

Query: 326 ADRIRLGIKNSRRISSV 342
           +     G++    +   
Sbjct: 362 SPDA--GVEAVNSLEEK 376


>gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 329

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 107/310 (34%), Gaps = 47/310 (15%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------------------- 110
            ++ ++          ++N+   +        R                           
Sbjct: 11  AVLRDFLNYMQTIKGKSINTIQVYFYDLRIFFRFLKIHRNIVDKNLEFDTIEITDIDIPL 70

Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPK 165
            + +T   + + +      R +T  +  + + S++  F + + + + + INP + +E PK
Sbjct: 71  LKTVTLSDLYTYMSFVSNKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPK 130

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                 R    ++ ++  +  +E +     +        L  G+R S+     + ++++N
Sbjct: 131 ILKRLPRYLNFDESKKLLTSVTEANHEYSVRDYAIITIFLNCGIRLSELVGINLYNIKDN 190

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIW 272
             +    K G   ++ L    ++ +      +           FI+   Q+++       
Sbjct: 191 TLT-VFGKGGKERSIPLNKACLQAIEDYMKIRPVNGLKDKSALFISRRNQRISKESVQKI 249

Query: 273 FKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR 328
            K    +AG++    S H +R  +AT+    G      L    G +++   E YT   D+
Sbjct: 250 VKRYIKEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQ 308

Query: 329 IRLGIKNSRR 338
            +L  +   +
Sbjct: 309 QQL-KEAVNK 317


>gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
 gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2]
          Length = 329

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 90/298 (30%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y     +   L+ ++  ++      +     R +   D  ++   HIRS +      
Sbjct: 20  IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79

Query: 129 --TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L+  R  +KW A+R+  V  NP   V  PK      +  + E        
Sbjct: 80  GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 E  + R   E     GLR S+     ++H++   ++  +        V +    
Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREVMVLGKG 199

Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276
            K   +    K    +                              ++   Q  I  K  
Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHALFLSARGKRLTQRQIQIRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136]
 gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 376

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 27/355 (7%)

Query: 11  VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +  +  R+GK  Y     Y   G     R           A  S         E      
Sbjct: 28  LYLDIYRNGKRTYEYLKLYLIPGTDNNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87

Query: 66  KKPTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                L   +  Y +              +      +   +   F   ++     +  ++
Sbjct: 88  TDKVYLLDWMQTYLEYQEKRDKKGIGQIKAVTHILKEYAGE--RFLLDRVDLAFCQGYID 145

Query: 125 SRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIR 172
               T          S+   +          AVR + +  NP       E+PK       
Sbjct: 146 YMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRS 205

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231
             T E+++   +   +  + + A+ F  + GLR SD      +++  +    +       
Sbjct: 206 YMTIEEVRALIATPVQDGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQK 265

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      + L   P  ++    ++       +  + + K  A  AG+ K  + H  
Sbjct: 266 TKEPIYLPLSNEALKWMPEREDKAADDHVFSL--PSNINQYLKPWAEAAGITKRFTFHTA 323

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           R   AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 324 RHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 322

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
             +  +  +      +  +   ++   + ++    +   RKITT+ IR+ +       K 
Sbjct: 46  DFLEMFLDAKKIEGCSERTIQYYKVTVEHLLSHI-ETSVRKITTEEIRTYLAEYQKNNKC 104

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +      ++   F W   ++Y+  +P   + + K KT      T E +++      +
Sbjct: 105 SNVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIER-LRDNCK 163

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +     V  +       I   K      V         L  
Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               ++          +    ++  +   I  +    +  + +   H  R+  AT + D 
Sbjct: 224 YIAHRKDNNSALFVTLDAPHDRLKISGVEIRLRELGKRIDLERIHPHKFRRTMATRAIDK 283

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306


>gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 81/294 (27%), Gaps = 40/294 (13%)

Query: 70  TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGV 123
           +   L   +         ++ ++  ++    +       D      + +++   HIRS +
Sbjct: 3   SFSELADSFLAMLRDERGVSAHTLRAYTRELNDFTAFLADLLGNEAEVKQVEHLHIRSYL 62

Query: 124 ESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   S      +   +R  FKW  ++  V  NP L V  PK      R  + E++ 
Sbjct: 63  AVLYDRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVN 122

Query: 181 QFKSFWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------- 221
           +      +            + R+ +E L   G+R S+     +  +             
Sbjct: 123 RVLDSIEQTGKKDESASWPERDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILVLGKG 182

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSI 271
                +                    L     GK                 ++       
Sbjct: 183 RKERYVPLGDAANSAMRAYMPQREAKLQAAGKGKWMHSGPLLINLVARGDCRLTTRSVGR 242

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             KA A   G+      H +R    T   + GA    +    G + +   + YT
Sbjct: 243 IVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYT 296


>gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1]
          Length = 280

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 85/268 (31%), Gaps = 26/268 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
              +  +      +  +   ++      +    + D   I    + +        ++++ 
Sbjct: 10  FERFMITER---KSYYTIKEYKFLISGFLSYC-NKDLSSIDFDDVENYKNFIVTEKQYSK 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +S    + ++R+ +K+  +     +        P R+++ +  +  +         ++  
Sbjct: 66  ASQYLAMKALRLYYKFKNKNTPPNL-------IPPRRSQKMPVYLNQKDAGVLINGAKSI 118

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           +        LY+G+R S+     +  +  +   I     K      V +PD   + +   
Sbjct: 119 RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKSY 178

Query: 249 PIGKETFFINNDKQKMNAT-------QFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              +     +N+   ++               K  A  AG+ K  + H +R   AT    
Sbjct: 179 MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRHTFATSILR 238

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G     +    G  ++   + YT   D
Sbjct: 239 NGGDIRFIQQILGHSSLATTQIYTHIDD 266


>gi|75761863|ref|ZP_00741791.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490646|gb|EAO53934.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 363

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 99/368 (26%), Gaps = 43/368 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K++ R G   +  R     G  ++++              + +               
Sbjct: 3   IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TN 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T   +   Y           +S  + ++   + ++++ G      IT KH+ +    
Sbjct: 54  SSLTFAQVADSYFDWY-CQRRKQSSINAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNK 112

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               ++  +  Q  T +  +F +A++   +  NP       + ++     + + D  Q  
Sbjct: 113 LLNNYSADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRF 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239
               +       F  L YSG R  +        +     +I   KT     V  P     
Sbjct: 173 IDTVDDLLYNAFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSS 232

Query: 240 -----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                                 L          F          +     +K     AGV
Sbjct: 233 NRIILLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIAT-STLDERYKKYVATAGV 291

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            K   H  R   A+   + G +   +    G   V     TY+      +   +    I 
Sbjct: 292 KKILLHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQ--AEALAFIE 349

Query: 341 SVVDSDDP 348
             +    P
Sbjct: 350 DDLAKKLP 357


>gi|168210485|ref|ZP_02636110.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
 gi|170711435|gb|EDT23617.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium perfringens B str. ATCC 3626]
          Length = 368

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 110/347 (31%), Gaps = 36/347 (10%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G        G+     +RIR+      T   A       S+        P+ K   LK 
Sbjct: 9   KGNWQVVISLGNDPVTKKRIRVKKQGFKTKKEAERFVNEYSSKVDNGFLLPKSKDIYLKD 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----K 127
            I ++  +    S+ +N++ ++ S  +  I+   G++   ++ T  I++           
Sbjct: 69  FILDWFYNHKILSIGINTKNNYLSRIETYIVPLLGNYKLTELDTLTIQNFYNYLLTKDTP 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             PSSA + + ++    K+A + + +   P    +    +   I  W+K+++  F +   
Sbjct: 129 LKPSSAKKVIEALSNCLKYAKKLKLITYLPTDIEK-VNIEKPKIEFWSKQELDFFLN-EI 186

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +           +G+R  + C      +      +   +              + L  
Sbjct: 187 KDTYLYFPVLICALTGVRVGELCGLKWCDVDFKRGYLNITRQVISDKSTNTLVCTENLKT 246

Query: 248 TPI--------------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
           T                            ++ + +  N    S+ F  K  K        
Sbjct: 247 TKSDRTISIPKVLLREFEKNLKAPNNFIVLSRENEMCNPRNISMDFTKKVNKYKDRLPQI 306

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           S HG+R   AT+    G     +    G   +     TYT   + ++
Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHIMEEMK 353


>gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct]
          Length = 328

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 94/317 (29%), Gaps = 18/317 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   G+         G+R R  +  +        +A         +   P+ +   L  L
Sbjct: 5   KLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQFEATARQKCAENPCWTLRPKDRRR-LSEL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPS 131
           +  + +  H  +L+   R    +    + +  GD     +    +   RS   +   +  
Sbjct: 64  VELWYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGK 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187
           +A   L  ++ ++    +   +     +   RP +  E    +  +             +
Sbjct: 121 TANNRLGYLKSMYNELRQLGVIDHENPVGRMRPLKLQERPLSYLTKHQVSELLTALDART 180

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               P++     L +G R  ++     + L+ N       K+  + +V + +     L  
Sbjct: 181 TSPHPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                  F             F +   + + K    +++H +R   A+     G     L
Sbjct: 241 HWQTHGPFTNCLGV-------FRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTL 293

Query: 308 MATYGWKTVDQAETYTK 324
               G  ++     Y  
Sbjct: 294 QHILGHASLSMTMRYAH 310


>gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
 gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73]
          Length = 322

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 30/277 (10%)

Query: 78  YRKS-AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITTKHIRSGVESRKH 128
           + +S      +   + I++E    Q      +  G          +     R+ +  R+ 
Sbjct: 29  WLESLVQTRRMTAQTAIAYERDTRQFLFFLCQHLGYQPTLNDLANLRVADFRAYLAYRRT 88

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------ED 178
                 S  + + S+R  F +  R++ V +     V  PK      +  T        ++
Sbjct: 89  QNINARSLSRNMASLRSFFNYLSREKEVNVPAAKLVRTPKYPKSLPKALTIESALRIVKE 148

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
             Q ++     ++       L   G+R S++     +   +        T K G    V 
Sbjct: 149 ENQQENEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLVP 208

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS--AH 287
           +     + +           +NN           +         +      G+ ++   H
Sbjct: 209 MIPIVHEAVENYLKCCPYPLLNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     G     +    G   +   + YT 
Sbjct: 269 ALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTH 305


>gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 322

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 14/271 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K+  T    +  +  +      +  +   +    D++++K      RKI+T+ IR  + 
Sbjct: 38  QKEEVTNDEYLQLFLDAKRIEGCSERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLV 96

Query: 125 SRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +     +  +      ++   F W   ++Y+  +P   + + K K       + E ++
Sbjct: 97  DYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIE 156

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELP 238
             +       +     + L  +G+R  +     +  +                       
Sbjct: 157 MLRDHCQC-PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDA 215

Query: 239 DGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              + LL      K+              ++  +   I  +    K  + K   H  R+ 
Sbjct: 216 KAKLHLLNYLSERKDNNPALFVTLDVPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRT 275

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT + D G    ++    G   +D    Y 
Sbjct: 276 MATRAIDKGMPIEQVQKLLGHSQIDTTMQYA 306


>gi|283771168|ref|ZP_06344059.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459762|gb|EFC06853.1| phage integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 349

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKHEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      +   ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNTLKSACRVNNIPIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 82/283 (28%), Gaps = 18/283 (6%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSAI 134
                  +L+ +++ S+     Q  R             + T  +      +K  P S  
Sbjct: 15  INDMQVRNLSPHTQDSYLLQVSQFARHFAKSPALLCQEDVRTYQVY-LTNEKKLAPKSIH 73

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             ++++R L++  +  E+        +  P+         + E++  F     E  + + 
Sbjct: 74  VAVSALRFLYRVTLGFEWDFDRI---IPCPRVPKTLAVILSPEEVLHFLG-CVESLKHQT 129

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTP--- 249
                  +GLR S++     + +      ++  +        V L    ++ L       
Sbjct: 130 ILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDYWRAV 189

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
                 F      + ++              +G+    + H +R   A    +AG     
Sbjct: 190 RPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHLLEAGTDIRT 249

Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSRRISSVVDSDDP 348
           +    G +++     Y + A             +   V    P
Sbjct: 250 IQLLLGHRSLSTTSQYLRIATSKVCAATSPLELLPRPVPKAAP 292


>gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1]
 gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1]
          Length = 256

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 21/260 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132
           + EY +        +  +   + S   +            +T    R  +     + P++
Sbjct: 4   VEEYLEYLRVVKKRSERTLYQYRSILKEFAEY------EPVTLDSWREYLHRISSNAPTT 57

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  ++    W   +  + +      E    +   +    + +  +      +    
Sbjct: 58  QRNKLVVVKNYLNWKADRGILNVKDRFWNEAEPPRYAVLPKAVELEEIKRIIEACDHRMY 117

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +  F+ L  +G+R S+     +Q +   +        K      + +    ++ L  +  
Sbjct: 118 KAIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGNKERIINVSRDLVEELVRSGF 177

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            ++         K +        K  A KAG+ K  + H  R   A    + G   +++ 
Sbjct: 178 FEK---------KPSVRSIQRAVKRYARKAGIRKKVTPHIFRHSFAVALIERGIPLNKIQ 228

Query: 309 ATYGWKTVDQAETYTKGADR 328
           A  G   +     Y K A  
Sbjct: 229 ALLGHANISTTSIYLKIASE 248


>gi|307711353|ref|ZP_07647773.1| phage integrase family protein [Streptococcus mitis SK321]
 gi|307616869|gb|EFN96049.1| phage integrase family protein [Streptococcus mitis SK321]
          Length = 384

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 109/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61

Query: 64  PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+ K+       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFKAYVGTVEETTSSQTKNIYRI---HILPIFGDKFVDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|254452140|ref|ZP_05065577.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198266546|gb|EDY90816.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  +++   +     ++        +I+          
Sbjct: 98  IGAPTLEATMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345


>gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 25/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L +         +L   S+ S      +     G       T   ++   +    +  S 
Sbjct: 28  LRARMIADMSGRNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLVESGVSI 86

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q +T ++ LF+  +R+  +        E  K         +K+++++     +   
Sbjct: 87  CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKI----PLVLSKKEIKRIL-AMAPSL 141

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248
           + R+        G+R  +  R  V  + ++   I+  ++       V LP   + LL   
Sbjct: 142 KARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQW 201

Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
              + T    +                 ++ Q S  FK  A +AG+    + H +R   A
Sbjct: 202 WKERPTGQDRDVPAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T   + G     + A  G   +     Y   A
Sbjct: 262 THLLERGVDIRVIQALLGHSKLTTTARYASVA 293


>gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
 gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143]
          Length = 312

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 85/299 (28%), Gaps = 25/299 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
            +  I  +         L+ ++  ++    ++                H   +R  +   
Sbjct: 13  WQTAIDSFLTYQEVARQLSPHTLSNYRRDLEKFADYCRHRAIVDHHHAHNSDVRQWIALL 72

Query: 127 KHTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                S      S+      +K++ +Q     NP + ++ P+ +    +    + MQQF 
Sbjct: 73  HRNGLSGTSLSRSLSSLRSFYKYSNKQGG-DHNPAIGIKAPRGEKRLPKTLDIDSMQQFL 131

Query: 184 S---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD 239
           S         + R   E    SGLR S+      +         I T K     T+ +  
Sbjct: 132 SIDGDDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVGS 191

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGV--NKSAHGVR 290
             +  L      +      N+   ++A              K  + + G+      H +R
Sbjct: 192 HAIAALKNWFSVRSDAHPINNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQKIHPHMLR 251

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
              A+   ++      +    G   +   + YT   D   L         R       +
Sbjct: 252 HSFASHMLESSGDLRAVQELLGHANITTTQVYTH-LDFQHLAKVYDTAHPRAVRKKPKE 309


>gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 311

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 102/314 (32%), Gaps = 18/314 (5%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
           T+     + L    P    + +   +   L   + +Y  +        N++   +    +
Sbjct: 2   TWAEETEALLRAGQPLPGELPANDLR---LNEAVEKYTMAVAPRK-KRNTQRLDQEIGGR 57

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC- 158
           +IR       + IT+K I +  + R  +  PSS IQ L+ +  +++ A  +  + +N   
Sbjct: 58  LIRYFDGKSLQTITSKDIAAYRDYRLQQVGPSSVIQDLSFLSCMYRMARIEWGLDVNDPG 117

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQH 216
             + RP      +   T + +     +       +L    LL   + +R S+        
Sbjct: 118 AEIRRPSAPKNRLSLLTPKQIDTLLDYCCVSKSEKLYCYVLLLLHTAMRPSEGAGLRWDQ 177

Query: 217 LQNNIFSIK-------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
           +      I         ++     T+      M++      G          +      F
Sbjct: 178 VLIGQGMIDLTETKTDPRRVPMTRTIRKMFERMRVAGEGENGFVFLPPGKGYRDQPHRYF 237

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              F      AG+ N + +G+R  +A+     G     +    G + + Q   YT   D 
Sbjct: 238 RRSFDNACRYAGICNFTLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTHFLDD 297

Query: 329 IRL-GIKNSRRISS 341
            +L  I     +  
Sbjct: 298 HKLSAIGAIDNLGR 311


>gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 20/317 (6%)

Query: 16  TRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + GK        +  +G+R R            Y   +  +   +E++  P     +L 
Sbjct: 4   KKEGKKWLVDLRPQGRNGKRYR-RQFDTKFEATQYEKHVLATAHDKEWLEKP-ADRRSLS 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
            LI  + K   +   +  +  ++      + ++ G     +IT K +     ++ +    
Sbjct: 62  ELIELWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGRA 118

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +  +F   +  +       +S  + K        +   D          G
Sbjct: 119 MTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVLSG 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              ++A    L +G R  ++       + +   +    K G   TV +       +    
Sbjct: 179 DSYKVAKLC-LATGARWGEAEELKGSTVSHCKVTFLDTKNGKDRTVPISQELQDEIVTGK 237

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G+       +        F +  K         ++AH +R   A+     G     L  
Sbjct: 238 SGRLFKDCYAE--------FYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQK 289

Query: 310 TYGWKTVDQAETYTKGA 326
             G  T+ Q  TY   A
Sbjct: 290 ILGHATIQQTMTYAHFA 306


>gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ]
 gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC
 gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 83/279 (29%), Gaps = 21/279 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK--- 127
           +  +         ++ ++   +     ++       G   +  +    +R  +       
Sbjct: 5   LDAFLDHLRNERQVSQHTLDGYRRDLAKVHAHCEREGLDAWSALDAGRLRRLIARLHLQG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+  S  + L+++R  +++ +R+     +P   +  PK +    R    +  QQ      
Sbjct: 65  HSSRSLARLLSALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L      ++          + +     
Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDLPIGSKAR 184

Query: 243 KLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294
           + L                 F+    +++      +  +     + G +   H +R   A
Sbjct: 185 EALRAWLSLRAQARPADGALFVGRTGRRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   ++      +    G   +   + YT   D   L  
Sbjct: 245 SHLLESSQDLRAVQELLGHADIATTQIYTH-LDFQHLAA 282


>gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
 gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella
           piezotolerans WP3]
          Length = 317

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 32/289 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------------RS 121
           +  Y +       + ++  +      + I    + +   I   ++             R 
Sbjct: 13  VEYYLELCLAKGQSSDTVRNKRGGLKKFIIWCQERNISTIDHINLDLMDDYAAYLNSYRK 72

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
            +++    P+     LT ++   K+  R+  ++ N    +E P +  +  +     +   
Sbjct: 73  KLDNEPLGPAQKRNLLTYVKTFVKYMHRKGLLSKNTLSDIELPSKGHQIPKALYSVEEIE 132

Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
               Q   F  +G + R   E    +G+R  +  +  V  +           K      V
Sbjct: 133 VILEQPLLFGIKGLRDRATLEIFFATGIRRGELVKLNVDDIDFTGKMVCVHGKGKKERLV 192

Query: 236 ELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKS 285
            +     + LA         F            N+ ++    + S         AG +++
Sbjct: 193 PISQRGCEWLAFYTGKIRPRFAFISSGKALFLANNGKRYVPGKLSDMASQYVKLAGFDRT 252

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              H  R  +AT   D GA    +    G  ++   + YT    R +L 
Sbjct: 253 GACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTH-VSRKKLS 300


>gi|302185959|ref|ZP_07262632.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 354

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 104/355 (29%), Gaps = 30/355 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK     +             +         +  YI     +  TL+  
Sbjct: 6   KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
           +  Y            ++    S   ++I   G +    ++ + I    + R + PS   
Sbjct: 65  LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEPSRGG 123

Query: 132 -----SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +    L  +  L+  A+++  +    NP L++ +P       R  + E+ +   +
Sbjct: 124 TISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGRDRRLSPEEERLLLA 183

Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232
             +  S P L +     L +G+R S+        +                 +T      
Sbjct: 184 AVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKR 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            T          +         F       K     F+  +     K  +     H +R 
Sbjct: 244 ATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGHLKKKLDLPDFRFHDLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            + +   + G +  E+ A  G K++   + YT              R+ S+ + +
Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVVRLDSLKEKN 353


>gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
 gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996]
          Length = 299

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 90/269 (33%), Gaps = 19/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           +  Y K       + ++  ++        +++ +      + +T +   + ++       
Sbjct: 10  LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTEGSSETAQDLTRRDFVAALKRLSQQGL 69

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L++ R    W V+   +  +P ++++ P+      +   +E++         
Sbjct: 70  SERTLARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPA 129

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 +    FE +  SGLR S+     +  +  +  +   T K      V L    ++
Sbjct: 130 DDGLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQVPLSGKSVE 189

Query: 244 LLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295
            L      +         F   +  ++   Q     +A A +  +G + S H +R   A+
Sbjct: 190 ALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYAS 249

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               +      +    G   +   + YTK
Sbjct: 250 HLLQSSRDIRAVQELLGHSNLSTTQIYTK 278


>gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium]
          Length = 320

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 81/297 (27%), Gaps = 37/297 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             LI  Y +       LA  +   +    D++ + +   D     +   H+R  V     
Sbjct: 12  AALIERYLEHVRVEKRLAARTVTLYGLDLDKLGQFAVQDDVGLTAVQGTHVRRWVARMHA 71

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S       L+  R  + W  RQ  +A NP   V  P++     +    ++  Q    
Sbjct: 72  GGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLAEH 131

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCR------------AGVQHLQNNIFSIKTQ 227
                     ++     E L  SGLR  +                               
Sbjct: 132 VAESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAEVQVQG 191

Query: 228 KTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           K      V L    +  L                 +  FI     ++ A       K ++
Sbjct: 192 KGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQRLKRRS 251

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 252 LQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTR-LDFQHLA 307


>gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
 gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo]
 gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94]
 gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94]
 gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33]
 gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10]
 gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99]
 gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513]
 gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1]
 gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1]
 gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026]
          Length = 309

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
 gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444]
          Length = 309

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 29/281 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPS 131
           I  + +        + N+  ++                           + + +R   PS
Sbjct: 7   IGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAARGMAPS 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L+++R  F++  ++     +P   ++ P  + E     ++E++ +         +
Sbjct: 67  TQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKR 126

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244
            +   E L  +GLR ++     V +L              I      D    L       
Sbjct: 127 LKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLGRAALIA 186

Query: 245 ----------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
                           L  +      F     +  +   +     +  A +AG+      
Sbjct: 187 LSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGLRSERVY 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT     GA    +    G   +   + YT   
Sbjct: 247 PHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVL 287


>gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104]
 gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104]
          Length = 301

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130
             EY         + ++R ++      ++  +G+       ++   +RS + +       
Sbjct: 11  FDEYLALQ--CGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVA 68

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181
            ++  +  ++++    WAVR+  +  +P   ++ PK          ++            
Sbjct: 69  RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNG 128

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + RL  E L  +G+R S+ C   +  +      ++   K     +V     
Sbjct: 129 AAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAP 188

Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKSAHG 288
             + L            N +                    ++  +  A  +G  +   HG
Sbjct: 189 AGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHG 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 249 LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 293


>gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
 gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405]
          Length = 274

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 73/251 (29%), Gaps = 24/251 (9%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPC 158
                 D      T       +  R  +   A      + ++   F++ + +     NP 
Sbjct: 4   FQEHMSDSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPS 63

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGV 214
            S+ERPKR+    R  + +++    +     S    + R  FE +  +GLR S+     +
Sbjct: 64  ESIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKM 123

Query: 215 QHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------- 265
           + +  +      T K      V         L    +   T  +     +          
Sbjct: 124 EDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFL 183

Query: 266 --------ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                              +  +G+    H +R   AT     GA    +    G   + 
Sbjct: 184 NNRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDIS 243

Query: 318 QAETYTKGADR 328
             + YT   D+
Sbjct: 244 TTQVYTHIEDK 254


>gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 301

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 90/285 (31%), Gaps = 28/285 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130
             EY         + ++R ++      ++  +G+       ++   +RS + +       
Sbjct: 11  FDEYLALQ--CGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVA 68

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQ 181
            ++  +  ++++    WAVR+  +  +P   ++ PK          ++            
Sbjct: 69  RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTG 128

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240
                    + RL  E L  +G+R S+ C   +  +      ++   K     +V     
Sbjct: 129 AAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAP 188

Query: 241 FMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNKSAHG 288
             + L            N +                    ++  +  A  +G  +   HG
Sbjct: 189 AGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHG 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 249 LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 293


>gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 310

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 35/285 (12%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
           L   +          + ++  ++               G+     +   HIR  +     
Sbjct: 7   LADGFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGERGIGAVEHLHIRGYLSVLYA 66

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L S+R  FKW  ++  V  NP L V  PKR     R  + E++ +    
Sbjct: 67  RGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSAEEVNRVMDS 126

Query: 186 WSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                      + R+ FE L   G+R S+ C   + ++Q    ++    K      V L 
Sbjct: 127 LESADGGTWPERDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVRGKGKKERLVPLG 186

Query: 239 DGFMKLLAMTPIGKE------------------TFFINNDKQKMNATQFSIWFKAKATKA 280
           D     +      +                            ++         KA A   
Sbjct: 187 DEAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRSVGRIVKAIAQSR 246

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           G+  +   H +R    T   + GA    +    G + +   + YT
Sbjct: 247 GLAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYT 291


>gi|292491157|ref|YP_003526596.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291579752|gb|ADE14209.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 400

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 108/362 (29%), Gaps = 30/362 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGS---------TPK 57
            +    +  G+  + F    G    RI L    E +   A                    
Sbjct: 27  GLRLRVSTVGRKSWLFTYRKGGKLNRITLGVYPEMSLARAREEVSQRRSLLNRGLDPAHI 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                   ++  T+  L   Y +   +      S    E    + ++ + G    + I  
Sbjct: 87  ERIHKEEERQAPTMAQLAELYLE--RYAKAKKRSWREDERLLKKDVLPRWGHRKAKDIVR 144

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + + + ++    + +P  A + L  +R +F +A+ +  + +NPC +V+ P ++ +  R  
Sbjct: 145 RDVVALLDDIIDRGSPIVANRTLACVRKMFNYALERSLIEMNPCSAVKMPGKERKRDRVL 204

Query: 175 T---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                                RLA +  L +     +  RA   H    +         T
Sbjct: 205 NEEEIRTFWHGLKEARISLPIRLALQLQLVTAQCKGELIRAEWSHFDFALGWWTISAERT 264

Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
              +        L                F   N ++ +  T      +      G+   
Sbjct: 265 KNHLAHRVPLSPLALESIEGLRGFHSLFLFPSRNGEKPLLDTSIDHAVRKNLDVLGIAPF 324

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNS-RRISS 341
           + H +R+ +A+     G +   +              Y + +     R  ++   +++ +
Sbjct: 325 TPHDLRRTAASHMTGMGISRLVVSKILNHAESGVTAVYDRHSYDSEKRHALEAWGKKLEA 384

Query: 342 VV 343
           ++
Sbjct: 385 II 386


>gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
 gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A]
 gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           SD2112]
          Length = 322

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           +  I++Y  +      +  +   +++    +    G    +KITT+ +R       +SR 
Sbjct: 45  ESYITDYLAAKQVEGCSEKTINYYQATLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRN 103

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++ +  +P   + + K   +    ++ ED+++      
Sbjct: 104 SSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLER-LRDHC 162

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     + L  +G+R  +        +  +        K      V         L 
Sbjct: 163 NSERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQ 222

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                ++          +   Q+M+        K    +AG+     H  R+  AT + D
Sbjct: 223 NYLAKRKDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAID 282

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G + +D    Y 
Sbjct: 283 KGMPIEQVQKLLGHERIDTTLHYA 306


>gi|158522916|ref|YP_001530786.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511742|gb|ABW68709.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 94/354 (26%), Gaps = 23/354 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V     +     Y F     R     +  +     A           +  + +P      
Sbjct: 3   VYSVTGKG--WRYDFTHMGTRYTEAWFKTKKEANQAEAEKRKEIKNPKPVLETPTD--MA 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHT 129
              L+++        + + +  IS+     +     G     ++T   I+    +  K +
Sbjct: 59  FLELVNQKLDHVKAYN-SKSHYISYLYMARRWANLWGHLPCGELTGDMIQKHLYQRHKVS 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +A Q L  +R +F + V Q+ +  +P   +     + +       ED+ +  +     
Sbjct: 118 AYTANQDLRYLRAVFNFGVGQKMIYTDPTAGIRFFPVEKKIKYVPCSEDIDKVIAAADPD 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           +Q  L         +   +          +         K     T   V + +    +L
Sbjct: 178 TQDYLWAIRETLGRVSEINRLVWEDINLDERFIILYTRKKRGGHLTPRKVPMTEKLHDVL 237

Query: 246 AMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                 +          +                   + K+   KAGV     H +R   
Sbjct: 238 QNRFNRRSPDVPWVFWHRFWNKRNGEFNIGPYKDRKRFMKSLCEKAGVRYFRFHALRHSG 297

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDSD 346
           A+I          +    G +     E Y     D  R  I    R      +D
Sbjct: 298 ASIMDGNDVPIAAIQRILGHENRKTTEIYLHSMGDMERNAIAVFERARGKSHTD 351


>gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 304

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 82/286 (28%), Gaps = 26/286 (9%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130
           ++ E+          + ++  ++      +I  +G        I    +R+ +       
Sbjct: 11  VLDEFADHLRLEMGRSPHTVRAYVGDVRGLIAFAGARGVATADIDLTLLRAWLAEHTRRG 70

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +   +  + ++S++    WAVR+  ++ +P   +  PK             +    +   
Sbjct: 71  AARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDVIAAAA 130

Query: 186 ------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                      +  +  E L   G+R  + C   V  +  +   ++         TV   
Sbjct: 131 AERPQGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKERTVPYG 190

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-KSAH 287
                 L                           +++             +AG      H
Sbjct: 191 APAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAGGPAMGPH 250

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           G+R  +AT   + GA    +    G  ++   + YT  +      +
Sbjct: 251 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAV 296


>gi|225351903|ref|ZP_03742926.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157150|gb|EEG70489.1| hypothetical protein BIFPSEUDO_03507 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 358

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 97/341 (28%), Gaps = 41/341 (12%)

Query: 16  TRHGKIIYYFRKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             +G     FR    +  R                +                      T 
Sbjct: 7   KANGTWYVQFRYTDWKGERQQKLKRGFATKKEAQTWEREFLMQKQA--------DVNMTF 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
           +     Y K      L +N+ ++ ES    +I+   G     +IT K +     + +   
Sbjct: 59  ESFAQLYEKDMKPK-LKLNTWLTKESIIQKKILPYFGKRKLSEITAKDVMDWQNAIRELT 117

Query: 128 ------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQ 180
                 ++P+        +  LF  AVR   + +NP          +   +  WTK++  
Sbjct: 118 DAKGKPYSPTYLKTVHNQLSALFNHAVRYYGLQVNPAAKAGNMGVEERREMLFWTKDEYL 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           +F     +      AFE L + G+R  +              ++   K+           
Sbjct: 178 KFADAMMDKPLSYYAFEMLYWCGIREGELLALTPTDFDFEAGTVSISKSYQRLKGKDVIT 237

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                     +++P      +        +   N     ++           A  AGV +
Sbjct: 238 TPKTKKSNRVIKMPKFLCGEMEDYLKMFYSTGANERIFSVSKHYLHHEMDRGAKAAGVKR 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R    ++  D G TA  +    G +++D    Y  
Sbjct: 298 IRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 338


>gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b]
 gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b]
          Length = 390

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 100/329 (30%), Gaps = 29/329 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLISEYRK-- 80
            G  R I+L    E +   A    L               +   K  TL     ++    
Sbjct: 50  DGKMRVIKLGCFPELSAEDARQLCLKHKREISVGASADELAKSTKSITLDQFYEDHYLPW 109

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFL 137
              +   + N    + S       + G      I+   ++      K   + P S    +
Sbjct: 110 YKTYRRASANIVQMYRS---NFHLRFGHRQLHSISQTDLKQLTNEMKQLGYAPGSVNTTV 166

Query: 138 TSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR 193
             +R + + A       +  +               R  ++++ Q+ +    +   +   
Sbjct: 167 VVLRGMLRRADDWGLCRIHHSLHKPPNLLPDTKRHERFLSRDEAQKLQVVLRKRGATPVN 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIG 251
           LA  FLLY+G R S+   A  + +  +    +    K G   TV L    + +L      
Sbjct: 227 LAILFLLYTGARKSEVLNAEWRSINMDRCEWRIPLSKNGQPRTVILSQKAVAILQSARSY 286

Query: 252 KETFF----------INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           ++  +            N +  +        +K    +A +     H +R   A+   +A
Sbjct: 287 QQRHYGKQAKQVSAVFANPQTLLPYHNIWETWKRVRIEADLPDLRLHDLRHSYASTLINA 346

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G + +E+    G   +   + Y   A   
Sbjct: 347 GVSIYEVQKLLGHSHIATTQRYAHLASER 375


>gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1
           str. 16M]
 gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
 gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD
 gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M]
 gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M]
 gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether]
 gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9]
          Length = 309

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|228902069|ref|ZP_04066233.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|228857495|gb|EEN01991.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 362

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 100/368 (27%), Gaps = 43/368 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K++ R G   +  R     G  ++++              + +         +     
Sbjct: 2   IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKM--------LVEKETN 52

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T   +   Y           +S  + ++   + ++++ G      IT KH+ +    
Sbjct: 53  SSLTFAQVADSYFDWY-CQRRKQSSINAIKNAIYNHLLKEFGKMKIDTITAKHVMNYQNK 111

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               ++  +  Q  T +  +F +A++   +  NP       + ++     + + D  Q  
Sbjct: 112 LLNNYSADTLKQIHTILSAIFNFAIKFYGLTSNPARIAGNFELESNKRMSYWEFDEFQRF 171

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239
               +       F  L YSG R  +        +     +I   KT     V  P     
Sbjct: 172 IDTVDDLLYNAFFSTLYYSGARKGELLALTWADVDFVGKTININKTEYNRQVTKPKTKSS 231

Query: 240 -----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                                 L          F          +     +K     AGV
Sbjct: 232 NRIILLPTLIINLLKKLKEHATLTAPVKNDYVVFGEFYNSIAT-STLDERYKKYVATAGV 290

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            K   H  R   A+   + G +   +    G   V     TY+      +   +    I 
Sbjct: 291 KKILLHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSHLYPSKQ--AEALAFIE 348

Query: 341 SVVDSDDP 348
             +    P
Sbjct: 349 DDLAKKLP 356


>gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
 gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family
           [Veillonella sp. 3_1_44]
          Length = 357

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 106/362 (29%), Gaps = 42/362 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R        +  +G+R       +     A    +  +     +         +L   
Sbjct: 3   KKRSDGRYQVSKMINGKRKYFYGSTKKAAAEAMEKYVNANQSCANF-----DDTISLNTW 57

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132
           I+ + +     S+   +  S+    ++ I  K G     +I    +R   ES    +  +
Sbjct: 58  INIWLQ-LKEKSITPATYQSYTGIINRYIRDKIGGVKLAEIKPNTLRYVFESMDGLSSRT 116

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +T +  + + AV+ + +  N   +++RPK            D  +        S+ 
Sbjct: 117 ISYTMTILSSILEQAVKDDIIPKNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNISNSEH 176

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------------FSIKTQKTGTIITV 235
              F+    +G+R S+        +                      S  T+ T +   +
Sbjct: 177 HALFKLAFATGMRRSELLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTTSSKRII 236

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-------------KMNATQFSIWFKAKATKAGV 282
            +    ++ L       +   I                       + S   K  A   G 
Sbjct: 237 AIDTDTIQELMKHKTTIDKRRIKTMNWINNNLVFPGIKGAPRCPDEVSKLCKKYANLIGK 296

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340
              + HG R   AT+  + GA    +    G  +  +   TY+      ++      RIS
Sbjct: 297 PTFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTP--KMEDDIVERIS 354

Query: 341 SV 342
            +
Sbjct: 355 KI 356


>gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
 gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989]
          Length = 343

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128
            LI+++  +      +  +   + +   ++       +   +TT  +R  +   +     
Sbjct: 67  ELINKFIAAKEIEGCSERTTKYYYATLIKMDSMI-TKNVTHLTTDDLRMYLTEYQKINNC 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +S      ++   F W   + Y+  +P   + + K        ++ E ++        
Sbjct: 126 SKASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLEL-LRDNCN 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  R  +  +                  V         L  
Sbjct: 185 NLRDLAIIDLLSSTGMRVGELVRLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLRN 244

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +    +      +    ++N +   I  +    K G+NK   H  R+  AT + D 
Sbjct: 245 YINSRNDDNVALFVSLDAPHDRLNISGVEIRLRQLGRKLGINKVHPHKFRRTVATKAIDK 304

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++ +  G   +D    Y 
Sbjct: 305 GMPIEQVQSLLGHSQIDTTMHYA 327


>gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 307

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 90/297 (30%), Gaps = 36/297 (12%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS----------GDFDYRKITTKHIRSG 122
            +  + +       L+  +  ++E+  +   +            G    R+     I   
Sbjct: 11  WVEPFVRHLSGERRLSAYTVRNYEAALETFFQFLDTDSKWGGNLGKVSLREARDFVIEQ- 69

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              R+ +  +   +++ +R  FK+ +RQ  +  NP + +  PK   +     T++ ++  
Sbjct: 70  --QRRVSRRTLHNYVSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAFMTQKQVKLL 127

Query: 183 KSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
                           +  + RL  E L  +G R S+ C      +  +    +    G 
Sbjct: 128 LDGPMLLLENESITAFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEGVARIVGKGG 187

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGVN 283
                 L    M +L                    N + K       +  K     A + 
Sbjct: 188 KSRICPLGRVAMAVLDKWRREFAVGTAFADPVVLSNRRVKWTPRGVQLLLKKYLALADLP 247

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
              + H +R   AT   D GA    +    G   +   + YT     R++     + 
Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAH 304


>gi|251772728|gb|EES53290.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 326

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 105/319 (32%), Gaps = 21/319 (6%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  + +  G   +           ++ + +     +  +++    + TTL   +
Sbjct: 6   KRGDLQWEVQIRRKGFPPQSRTFSAKAEADSWAAVIESEMARGVFVSRTEAENTTLSEAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +                 Y+              I +  + +  ++R  + + S+ 
Sbjct: 66  DRYEREISLLKKGAAVETVRIRYWKNY--PLSARPLAGIRSSDLAAWRDARLSEVSSSTV 123

Query: 134 IQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            + +  +  +F   +++  +      ++       P+ +   ++    E + +       
Sbjct: 124 NREMNLISHVFTICIKEWGMASLVNPVSQIRRPRNPESRERRLQFGELEKILEHTDSQIL 183

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLA 246
           G   R A    L +G+R  +       H+        I   KTG   TV L    +++L 
Sbjct: 184 GPVVRFA----LETGMRRGEIASMRWDHVDVKKRVLLIPETKTGKSRTVPLTTEALRILN 239

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
             P   +                +  F+    +AG+ + + H +R  + +   + G    
Sbjct: 240 DLPRRLDGSIWGMTD----PHTMTRAFERACKRAGIEDLTFHDLRHEATSRFFEKGLNPM 295

Query: 306 ELMATYGWKTVDQAETYTK 324
           ++ A  G KT+   + YT 
Sbjct: 296 QVAAITGHKTLQMLKRYTH 314


>gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens
           SBW25]
 gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC
 gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25]
          Length = 299

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 85/295 (28%), Gaps = 24/295 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRK 127
           +  Y         ++ ++  ++    ++++               I+      + +    
Sbjct: 5   LDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSLRSLIARLHQAG 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L+++R L+ +  R+     +P   +  PK +    +    +   Q      
Sbjct: 65  QSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAV 124

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
           E      + +   E    SGLR S+     +  L           K      + +     
Sbjct: 125 EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAR 184

Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATK-AGVNKSAHGVRKFSA 294
           + L +    +      +D   ++            +  KA   +  G N   H +R   A
Sbjct: 185 EALQLWLPLRLLTNPADDAVFVSQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFA 244

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346
           +   ++      +    G   +   + YT   D   L         R   +   D
Sbjct: 245 SHMLESSQDLRAVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKGGD 298


>gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12]
 gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697]
 gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12]
 gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 29/356 (8%)

Query: 11  VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +  +  R+GK  Y     Y   G     R           A  S         E      
Sbjct: 28  LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123
                L   +  Y +            I        I+++         ++     +  +
Sbjct: 88  TDKIYLLDWMQTYLEYQEKRDKKG---IGQIKAVTHILKEYAGERFILDRVDLAFCQGYI 144

Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171
           +    T          S+   +          AVR + +  NP       E+PK      
Sbjct: 145 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 204

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230
              T E+++   +   +  + + A+ F  + GLR SD      +++  +    +      
Sbjct: 205 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 264

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                       + L   P  ++    +        +  + + +  A  AG+ K  + H 
Sbjct: 265 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 322

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 323 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 327

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 46/319 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K  ++ +       +L  ++   +ES  +  I+   G +  + +  +H+++   S+  +
Sbjct: 3   VKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHES 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               S+       +      A++   V  N   +   PK KT+        + Q+     
Sbjct: 63  GLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVAA 122

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
            EG + + AF   L SG+R  +        +     +I  +++                 
Sbjct: 123 LEGERLKPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTKTML 182

Query: 233 -----------ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNAT 267
                       T+ +P   ++ L                        F       +   
Sbjct: 183 AFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGSLYEDNNLVFATELGTPIEPR 242

Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            F   F     KA ++ + H +R   AT   +A      +    G   +      Y+   
Sbjct: 243 NFLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVM 302

Query: 327 DRIRLGIKNSRRISSVVDS 345
             I+     + +++++ ++
Sbjct: 303 PEIKKA--AAMKLNNLFEN 319


>gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
 gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 81/293 (27%), Gaps = 31/293 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD----YRKITTKHIRSGVESRKH 128
           +Y        +A  +  ++ S     +       G          +  + IR+ +  R+ 
Sbjct: 9   DYLT--RERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRR 66

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQE--------YVAINPCLSVERPKRKTEGIRPWTKE 177
                ++  + L+S++ L++W  R          Y+               +  +    E
Sbjct: 67  EGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISE 126

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
              +       G++       L   GLR S++       +          K G +  V L
Sbjct: 127 AENEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPERLRIKGKGGKVRIVPL 186

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHG 288
                  + +           +            N        +      G+    + H 
Sbjct: 187 IPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPDTATPHA 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +R   AT     GA    +    G  ++   + YT G D  RL   ++     
Sbjct: 247 LRHAFATHLLANGADLRAIQTLLGHASLSTTQVYT-GIDSSRLREVHAAAHPR 298


>gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae]
          Length = 316

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 38/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT----------PS 131
            S+A N+  S+     +  +   D    D  K+    +   + + +              
Sbjct: 21  RSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAV 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           SA + L ++R L ++AV +  V ++   +V  P       +  T +++          S 
Sbjct: 81  SAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESG 140

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                  + R   E L  +G R S++    V  +     ++    K G    V +    +
Sbjct: 141 ADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAV 200

Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
           + L                  +     F+N    +++        +  A  AG+    S 
Sbjct: 201 QALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSP 260

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G  +V   + YT
Sbjct: 261 HMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297


>gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255]
 gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255]
          Length = 319

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 88/297 (29%), Gaps = 39/297 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
             LI+ +            N+  ++    + +                 T +   + ++ 
Sbjct: 9   AKLIALFLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRNFVIAETQTLRDYLNDLDL 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R    SS  + L++MR LF++ + +   + +P   +  PKR     +  +  D+ +    
Sbjct: 69  RGFKSSSVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKVLSIADVDRLLGR 128

Query: 186 WSEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
               +              +     E L  +GLR S+     +   + +   I  +    
Sbjct: 129 AKADAESLDAPPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 188

Query: 231 TIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNATQFSIWFKA 275
               V L +   + +A                       F    +   +    F+   K 
Sbjct: 189 KERLVPLNNASRQAMADYLQTMADQRGAGKAASPRQSWLFPSFGESGHLTRQHFARELKE 248

Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A  AG+     S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 LAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
 gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559]
          Length = 265

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 18/256 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
             LA N+   +       +R        +IT   ++              +   Q +  +
Sbjct: 4   KRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIGNGFGVAYQNQCINGI 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +    +  +   +         RPK+  +     +KE++ Q         + +     L 
Sbjct: 64  KKFVSFLGKPLVLDTLV-----RPKKPQKLPVVLSKEEISQ-LFNVINNLKHKALLALLY 117

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFIN 258
            +GLR  ++ +   + + +    I+ ++          L + F+ LL M     +     
Sbjct: 118 SAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESFLTLLRMYYKKYKPKTYL 177

Query: 259 NDKQK---MNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312
            + Q      ++      K     AG+ +   + H +R   AT   ++G     +    G
Sbjct: 178 FEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTLRHSFATHLLESGTDLRYIQELLG 237

Query: 313 WKTVDQAETYTKGADR 328
             +      YT  + +
Sbjct: 238 HNSPKTTMIYTHVSSK 253


>gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
 gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21]
          Length = 293

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 95/282 (33%), Gaps = 25/282 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
            +  +     +    + ++  ++E      ++        + ++  K +R  +     + 
Sbjct: 2   YVERFMSFLRFEKHYSEHTLKAYEKDVRSYLQFWVAEQISFEEVGHKQLRYYLSILMDSG 61

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQQ 181
              SS  + L+S+R  +K+  R+     NP L V+  K+  +      ++      D   
Sbjct: 62  LEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKLNQLLDHDH 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 EG + RL  E L  +G+R ++  +   + +     +I+         +      
Sbjct: 122 IFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNKERIVPMLPH 181

Query: 242 MKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKA--TKAGVNKSAHGV 289
           +KLL    +  +     ++           ++                  +   KS H +
Sbjct: 182 LKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIRYLSLITSQQKKSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
           R   AT   + GA  + +    G   +   + YT    +R++
Sbjct: 242 RHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLK 283


>gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 322

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 14/271 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K+  T    +  +  +      +  +   +    D++++K      RKI+T+ IR  + 
Sbjct: 38  QKEEVTNDEYLQLFLDAKRIEGCSERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLV 96

Query: 125 SRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +     +  +      ++   F W   ++Y+  +P   + + K K       + E ++
Sbjct: 97  DYQKINDCSKVTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIE 156

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELP 238
             +       +     + L  +G+R  +     +  +                       
Sbjct: 157 MLRDHCQC-PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDA 215

Query: 239 DGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
              + LL      K+              ++  +   I  +    K  + K   H  R+ 
Sbjct: 216 KAKLHLLNYLSERKDNNPALFVTLDAPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRT 275

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT + D G    ++    G   +D    Y 
Sbjct: 276 MATRAIDKGMPIEQVQKLLGHSQIDTTMQYA 306


>gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509]
          Length = 317

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQLHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T  +   R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPIQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
 gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333]
          Length = 323

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 41/290 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GD------FDYRKITTKHIRSGVESR---KHTP 130
             L+  +  ++ +   +++        GD                IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPTAQQLRVDLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           ++  + + S R    WA  ++ V  +   ++   +         +  D            
Sbjct: 86  ATLARRVASFRTFSSWAQVRDIVPGDAGQNLRAMRPDNALPTVLSATDAAHLLETARVAA 145

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        +   A E L  +G+R S+     + ++  +  +I+          V 
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTIRVTGKGDKQRVVP 205

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283
                   L           +N +K  +N                         +AGV  
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              HG+R  +AT   D GA    +    G  ++   + YT  +      +
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315


>gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7]
          Length = 420

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 165 SQGQPIPFKTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 285 RWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 359

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 26/337 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--L 71
            R + G  +  + +  G  IRLP        P ++SA       +   ++P+    T  L
Sbjct: 7   RRQKRGDKVIRYHRATG--IRLPDDI-PETHPDFVSAWARCEAGQGQPDAPKAPAPTGSL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTP 130
                 +R S  +   +   R       + I  + G    + I  KHI + +       P
Sbjct: 64  AAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLAKLAGTRP 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    L + R +   A R   +  +P L+V+ PK K +G + WT+ D++ F+  W  G+
Sbjct: 124 LS---RLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGT 180

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKTGTIITV 235
             R  FE LL++  R  D+ R G QH+                  +    T         
Sbjct: 181 VQRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWA 240

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
           +     M+ L     G         +   +    S    A A +A +  ++AHG+RK   
Sbjct: 241 DERREMMEALRCLAGGLTFLQARGAR-PRSEKGLSNLISAAAREAKLEGRTAHGLRKARL 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           T  A+AG +AH + +  G KT+ +A  YT+ AD  RL
Sbjct: 300 TRIAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRL 336


>gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638]
 gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638]
          Length = 357

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 112/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +  R     
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R       TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLNDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  I + L 
Sbjct: 186 IEIYHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKIAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L               G ET   +   + ++    S +F      +G+       
Sbjct: 246 LTIDALNISLVDTLQKCREASGSETVIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190
           + + ++R  +K+ ++++ ++ +P  +++ PK         + ++M        +    G 
Sbjct: 5   RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGL 64

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE----------LPD 239
           +     E L  +GLR S+     ++++      I+          V              
Sbjct: 65  RNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWI 124

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
              + + +  I     F+    + M    F    K  +  +G+    + H  R   AT  
Sbjct: 125 MHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHSFATHL 184

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + GA    +    G   +   + YT  +
Sbjct: 185 LEGGADLRSVQTMLGHSDISTTQIYTHVS 213


>gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330]
 gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365]
 gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str.
           686]
 gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330]
 gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365]
          Length = 307

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
 gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 35/291 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIR---SGVESRK 127
           L   +          + N+  ++      +               T  +R   + ++ R 
Sbjct: 22  LTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGAADTAALRGYLADLDKRG 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              SS  + L+++R LF++ + +   A +P   +  PKR     +  +  D+ +  +   
Sbjct: 82  FATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLLACAR 141

Query: 188 E-------GSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +        ++ R A    L      +GLR S+     +   + +   I  +        
Sbjct: 142 QEADAAEGAARLRAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGKGDKERL 201

Query: 235 VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAG 281
           V L  G  + +A                  K  F    D   +    F+   K  A +AG
Sbjct: 202 VPLNAGAKQAMARYLEEVAAVAKDPKGASSKWLFPSFGDSGHLTRQHFARDLKDLAARAG 261

Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           ++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 262 LSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 312


>gi|256617053|ref|ZP_05473899.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256853752|ref|ZP_05559117.1| phage integrase [Enterococcus faecalis T8]
 gi|256596580|gb|EEU15756.1| phage integrase [Enterococcus faecalis ATCC 4200]
 gi|256710695|gb|EEU25738.1| phage integrase [Enterococcus faecalis T8]
          Length = 380

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 112/363 (30%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPR 65
           ++K + ++G++ + ++       R             +   A       R  I      +
Sbjct: 4   ISKYKKKNGQVAWMYKGHIATDPRTGEKINTTRRGFSSKQEAQKDYDEYRHQILYGVKKK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T + L +E+       S+  ++   S     +Q++   G      I+  + +  V+
Sbjct: 64  APDMTFEDLYNEWITHQR-TSVKASTIAISVRYANNQVLPAFGKLKLSNISVPYCQKVVD 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
                  S          + ++ V  +Y+  NP      P++K      + ++KE++   
Sbjct: 123 EWHSKYESYDYMRKQTAQILRYGVAMQYIDNNPMEKTLLPRKKEYEKNRKFYSKEELNNL 182

Query: 183 KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------- 225
              + +    +    F  L Y+G+R S+      + +      +                
Sbjct: 183 LDAFKDFGNMKQYAFFRLLAYTGMRKSEVLALQWKDIDTFNKELHVNKTLAVDEFGKVII 242

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQ 268
              +   +   + L    + +L    + ++  ++       +                  
Sbjct: 243 QSPKTRASRRVISLDTETLSILNNWKLQQKEEYLKLGYNTSSKEQHVFTTVKNTLYIPNT 302

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            + W +    K  + + + HG R   A++  +AG +   +    G +      + Y    
Sbjct: 303 VNDWLRYILKKYNLPRITPHGFRHTHASLLLEAGESVKVVQQRLGHENSKVTLDIYAHIT 362

Query: 327 DRI 329
           +  
Sbjct: 363 NNA 365


>gi|297626642|ref|YP_003688405.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 308

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 95/290 (32%), Gaps = 29/290 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           L ++Y +       + N+  ++ +   ++       G  D   +    +R  + S++ + 
Sbjct: 17  LFADYLRLQ--RRRSANTERAYLTDLRELALFLQGRGVHDPDHVRLTDLRRWLASQQASE 74

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
            P++  +   + RV F WA     +  +P   +  PK      +  T+ ++++     + 
Sbjct: 75  APATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAAAA 134

Query: 188 --------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
                    G +     E L  SGLR S+ C   V  L      ++          V L 
Sbjct: 135 AAAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVPLG 194

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAG--VNKSAH 287
              ++ +      ++ +                ++N                   +   H
Sbjct: 195 LPGLRAIDAWRAVRDQWVAPASANALFLGTRGGRINQRVVRRVVHESMRAVPEAPDIGPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNS 336
           G+R   AT   + GA    +    G  ++   + YT  +D   R   + +
Sbjct: 255 GLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQA 304


>gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 398

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 94/295 (31%), Gaps = 26/295 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESR-- 126
           I  +     +  + + ++  ++E    Q +R   +    +          IR  + S   
Sbjct: 6   IERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDLIRGFLSSLIE 65

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L+S++  +++ V+   +  +P   V  P+ ++      +++++      
Sbjct: 66  QGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQEISNLLYA 125

Query: 186 WSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                      + +L  E    +G+R S+        +  +   ++    G         
Sbjct: 126 QEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRKERIIPFG 185

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKS-AHGV 289
                    ++ L        + FF++   Q ++          +     G+ +   H +
Sbjct: 186 DRLAARISEYLALKHQKVGLSQIFFVSLGNQPLSGEVVYQIVHERLQSIPGLARRGPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
           R   AT   + GA    +    G K+V     YT      ++       R S   
Sbjct: 246 RHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYNAHPRASKKK 300


>gi|153955537|ref|YP_001396302.1| Phage integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855933|ref|YP_002473055.1| hypothetical protein CKR_2590 [Clostridium kluyveri NBRC 12016]
 gi|146348395|gb|EDK34931.1| Phage integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569657|dbj|BAH07641.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 392

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 114/391 (29%), Gaps = 59/391 (15%)

Query: 11  VTKERTRHGKIIYYF-----RKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +   + ++GKI+Y       RK  G R  +R            Y   +     K     +
Sbjct: 5   IKSRKLKNGKIVYDIIVDLPRKSDGSRNQLRKRGFKSKKEAQLY---IADVIMKSSNGYN 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                  LK  +  + K+    SL+ +++  +  +   I    G+    K+T   I+   
Sbjct: 62  FSGDKILLKEYLKRWLKT-EGSSLSPSTQKRYNEFCVHISNHLGEIPISKLTGLQIKEFY 120

Query: 124 E-----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +            +  + S+ ++    +      AVR   +      +++    +    +
Sbjct: 121 KNLEQPQVYSNFKKGLSRSTILKVHRMLHKALTDAVRDGTIDRTVISNIKYGSVEKTETK 180

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            W       F     E     L       +GLR S+      + +  N   +  ++    
Sbjct: 181 VWDNSTFYSFLDKIKEELI-YLPVLLAFETGLRQSEITGLKWEDIDINKKLLTVKRNYGY 239

Query: 233 ------------------ITVELPDGFMKLLAMTPIGKE--------------TFFINND 260
                               + L D  ++ L      +                    ++
Sbjct: 240 DALKKSLSDKKTKTKSSLRVINLFDNTIENLKKQKQQQRLNKLLYGKAYIESGYICTTSN 299

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
              +N    S  F     K    K   H +R   AT+          +    G  ++   
Sbjct: 300 GNPINPLYISKRFAQLVKKHNFKKIRFHDLRHSHATMLLKENVHPKIVSQRLGHSSIAIT 359

Query: 319 AETYTKGA-DRIRLG-IKNSRRISSVVDSDD 347
            +TYT  + D  +   +  + +IS  ++  +
Sbjct: 360 LDTYTHVSTDIEKNALLSANEKISQYIEEKE 390


>gi|258509091|ref|YP_003171842.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149018|emb|CAR87991.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259650380|dbj|BAI42542.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 360

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 94/337 (27%), Gaps = 29/337 (8%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + GK+  Y   ++   G+  +L          A ++A +        I   +    TL  
Sbjct: 6   KRGKVWQYEISYKDLDGKFKKLRKSGFPRKSDAELAA-SQVKSFYLDIKQYQAGAITLSE 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131
               +       S+   + I +E+    I +  G    R +T    +  +   ++ H P 
Sbjct: 65  YFDRWIHLYKKNSVTAVTFIKYENTLSHIKQLFGGILLRDLTRTLYQERLNIFAQNHAPR 124

Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   F   +R  L      +         ++   +  +   R    ++ +Q        +
Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRPISATKRALDYQEWRQLIQGLDTSN 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKL 244
             ++       +G+R ++        +      I   KT                    +
Sbjct: 185 TEQMIIYIAAVTGMRYAEVLGLTKSDIDLTSGEISINKTWDYKYHTGFKKTKNTSSVRSV 244

Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289
           +       +           ++                 +     K    G+ + + HG+
Sbjct: 245 VLNPASIMKLAHFLELHNPESSQTPIFASNGHSLVSAEINKVLTQKLKSLGLPRITFHGL 304

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           R   A+I    G +   +    G   +   + TY   
Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341


>gi|310779869|ref|YP_003968201.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749192|gb|ADO83853.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 362

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 102/345 (29%), Gaps = 41/345 (11%)

Query: 11  VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           V K+  +  +++Y F + G  ++ +            +             +   +    
Sbjct: 3   VYKD-GKKWRVVYTFNQCGELKQSQKRGFKTKKEASLW--------ESEHKLKGSKSVNM 53

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
           T       Y        +A  +    E  F   I+    +    KIT   IR        
Sbjct: 54  TFTSFYDLYMGDIKPR-VAETTYHLKELIFKNSILPYFQNMKMSKITPIIIRDFQNKLIT 112

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKE 177
                    +      +    +  L   AV    +  NPC      K R  + I  WT E
Sbjct: 113 GTNPKTGNPYKAHYIQKINAQLSALMNHAVNFYELKENPCKKAGPLKLRYDKKINFWTLE 172

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           + ++F            AF  L ++G+R  +     +  +      +K  K+        
Sbjct: 173 EFEKFTEVIEHKPMSYTAFNILFWTGIRVGELLALTLSDVDLKKGIMKIDKSYARLKGKN 232

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                       T++LP   ++LL             +    M    F         KAG
Sbjct: 233 IIKSTKNESSERTIKLPQNLVELLKKYVKMMYGLTQEDRLFPMTKEVFKNDLVRYCDKAG 292

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V K + H +R   A++  ++G     +    G   VD    TY+ 
Sbjct: 293 VKKITPHDLRHSHASLLINSGINPLAISKRLGHAKVDMTLNTYSH 337


>gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
 gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 88/272 (32%), Gaps = 32/272 (11%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+++++              ++  +T      +      +++    S+  + L++++ L+
Sbjct: 28  NTQLAYGRDLKDFDAFLARQNHDFLTASRGEVEDYLVYCDAQGLAKSTRARRLSAIKQLY 87

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-------AFE 197
           ++A  +     NP + +  P +     +  ++E++ +         +            E
Sbjct: 88  RFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVDRLLDAARNSGRALADQLRNTCLME 147

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT-------- 248
            L  +G+R S+     V   + +   +  + K G    V L +     LA          
Sbjct: 148 LLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRERLVPLSEPARDALAAWLVVRDKAD 207

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
                   P  +  F        +   +F +  K  A   GV     + H +R   AT  
Sbjct: 208 EAAQAKGKPPARHLFPSRGVMGHLTRHRFYLLIKEFAVTGGVPPEKVTPHTLRHAFATHL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              GA    +    G   V   E YT   +  
Sbjct: 268 LANGADLRAIQTMLGHADVATTEIYTHVLEER 299


>gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
 gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969]
          Length = 263

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 78/245 (31%), Gaps = 17/245 (6%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP   
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANPAKG 64

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  P+      +    +++ +            + R   E +  +GLR S+      +H+
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124

Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269
                      K      V +    +  L              +  F+ N  ++++A   
Sbjct: 125 DLVGGEVWVMGKGSKERKVPIGRTAVTWLNHWLALRELFEPQDDAIFLANTGKRISARNV 184

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              F     K GV  +   H +R   AT   ++      +    G   +   + YT   D
Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243

Query: 328 RIRLG 332
              L 
Sbjct: 244 FQHLA 248


>gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
 gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein
           [Vibrionales bacterium SWAT-3]
          Length = 434

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 103/335 (30%), Gaps = 22/335 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V       G+  +Y          L    + T                +    P +   
Sbjct: 32  GVRVYTD--GR-RFYVTHLSIPNKTLAAVGQLTLKKVRQHVRALQASFLDKETKPIRLIR 88

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128
               L+ E           ++++ +  S   + ++ + G F    I + H+    +    
Sbjct: 89  -FDALVKEEWADKVCKGWKLSTQGTASSALKKNLLPEFGRFPVSCIDSCHVHRWFDELSQ 147

Query: 129 T-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +   +A + L  +R +FK+AV+Q Y   NPC  +++ +++         E  +  K+   
Sbjct: 148 SYAGTANRNLDVLRSIFKYAVKQGYCIDNPCDGLKQNRKRKLNRFLSLDELARLHKALTV 207

Query: 188 EGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              Q  L           L +G R S+        ++   + +   KTG  +        
Sbjct: 208 VSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGREWHLPDSKTGAKVVYVGK-EA 266

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGV-NKSAHGVRKF 292
            +LL+  P         +               T+ S+ ++     A + +   H +R  
Sbjct: 267 QQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSMVWQQVRALAHIEDVRIHDLRHT 326

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            A+ +   G     +    G   +     Y    D
Sbjct: 327 FASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDD 361


>gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 456

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 111/313 (35%), Gaps = 15/313 (4%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84
             +  R R+  P  +  + A     TG     + E+              + +  K   +
Sbjct: 49  IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIF 108

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142
                +++ S       +++   G +    I  K +++  +    T   +A + L +++ 
Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQS 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           +FK A+RQ +   NPC+ + +  ++    R  +  +MQ+      +     GS  + A  
Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECEAVGGSIAQCADV 227

Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L   +G R S+      ++++ N   +   KTG  +           +      K   
Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   KQ  + +     +     + GV +   H +R   A+ +   G +   + +  G K
Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345

Query: 315 TVDQAETYTKGAD 327
            V     YT   D
Sbjct: 346 KVTMTLRYTHVGD 358


>gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 327

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 90/291 (30%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 L  +    E     + +  + + L+  +  +      +  +   + +    ++ 
Sbjct: 23  ERLQEVLQYTLFDYEVTKIKKDEELSEQNLVESFLSAKRIEGCSEKTLKYYNATIQSMLD 82

Query: 105 KSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             G    + I T  IR         +K +  +       +   F W   ++Y+  +P   
Sbjct: 83  GIG-KSIKYIVTDDIRCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 141

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + + K  T     ++ E ++  +   +E  +     + L  +G+R  +      + +  N
Sbjct: 142 IHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFN 200

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273
                          V         L      ++           +   +MN     +  
Sbjct: 201 ERECVVFGKGDKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRL 260

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    + G+NK   H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 261 RQLGKRLGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311


>gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx
           [Methylobacterium extorquens DM4]
 gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens DM4]
          Length = 365

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 35/312 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122
           L+  +  +R++ A    +A N+  ++E    Q +                 +  + +R+ 
Sbjct: 23  LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175
           + +R+       S ++ L  +R   ++  R+ + ++    +V  PK +    RP      
Sbjct: 83  MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228
                 E            ++       L  SGLR S++    A    +        T K
Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281
            G +  V +     + +A                        ++         A     G
Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNS 336
           +    + H +R   AT           +    G  ++   + YTK  D  RL        
Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLMSAFEDAH 321

Query: 337 RRISSVVDSDDP 348
            R   +  S+ P
Sbjct: 322 PRARRLPPSEPP 333


>gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 420

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
 gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118]
          Length = 305

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYR------KITTKHIR 120
           + E+         ++ ++  ++      +         ++G  D        ++ + H+R
Sbjct: 4   VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQATEAGVQDAAVPGETAQLDSAHLR 63

Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V +      SA    + L++ R  + W ++   ++ +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
 gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 88/304 (28%), Gaps = 48/304 (15%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR 126
              ++ EY +       L+ N+  ++     +              ++TT  +R  +   
Sbjct: 11  FAPMVEEYARYLRANMGLSENTVRAYAKDAVRCCTALHAMGISGFEQVTTDALRDWMAQE 70

Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               + +S  +   ++R  F W       A +P  ++  PK          ++  Q    
Sbjct: 71  AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLME 130

Query: 184 -----------------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                                           +   +     E L  +G+R ++     +
Sbjct: 131 QVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLNM 190

Query: 215 QHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQK 263
             +  +  +I+          V       + L                    F+ +   +
Sbjct: 191 ADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGGR 250

Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++          +A +AGV   S H +R  +AT   D GA   E+    G  ++   + Y
Sbjct: 251 IDQRIVREVVHREAQRAGVPDISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRY 310

Query: 323 TKGA 326
           T  +
Sbjct: 311 THVS 314


>gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 332

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128
             +  +  +      +  +   + S  ++++R   +   RKI+T+ IR  +   +     
Sbjct: 56  EYLQLFLDAKKIEGCSARTIQYYSSTVERMLRNI-EQPIRKISTEEIRKYLVDYQKINNC 114

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +      ++   F W   ++Y+  +P   + + K K       + E ++       E
Sbjct: 115 SKVTVDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKQPVKETISDEAIEL-LRDSCE 173

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247
            S+     + L  +G+R  +     +  +       I   K      V         L  
Sbjct: 174 CSRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECIVFGKGDKERKVYFDAKAKLHLQN 233

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +           +    ++  +   I  ++   K  + K   H  R+  AT + D 
Sbjct: 234 YLKTRADDNPALFVSLDEPHDRLKISGVEIRIRSLGRKLNMEKIHPHKFRRTMATRAIDK 293

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 294 GMPIEQVQKILGHSQIDTTMQYA 316


>gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 29/291 (9%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
           I  +     +    +  +   +    ++      +     F+  +      R+ + S   
Sbjct: 8   IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLME 67

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L++++  +K+ V+   +  +P   +  PK++         ++M++  + 
Sbjct: 68  AGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNDEMEKVLNK 127

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                  E  + RL  E L   GLR S+        +++    I+               
Sbjct: 128 PIREDDFEAVRDRLILETLYEVGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGK 187

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288
              ++ D +  +        + FF++ D + +         +     A V      S H 
Sbjct: 188 RLQDMIDNYRNIREEKVGKSDFFFVSLDGRPLTGEVVYKIVRTAL--ANVPHLTKRSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
           +R   AT   + GA    +    G  ++     YT    +++R       R
Sbjct: 246 LRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYNAHPR 296


>gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6]
          Length = 420

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVTQQALQLCGIRPDDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2]
          Length = 338

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 91/335 (27%), Gaps = 40/335 (11%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G+ +   R     G+RIR           AY   +      + ++   +     L
Sbjct: 4   RKLDSGEWLCDLRPNGVKGKRIR-KKFVTKGEALAYEKFINAELEDKPWLGEKQDNRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------ 125
             LI+ +       +L+ ++R    S    I    GD     IT        E       
Sbjct: 62  SDLINLWYDLYG-RTLSDSNR--MMSKLKAICAGMGDPIASNITAADFSEYREGRLKGEI 118

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      P +      ++  +F    +  +  +   L+     +  E +  +    
Sbjct: 119 PDITGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWQLPNPLAGIPTFKVDEKMVSFLYPA 178

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             +    +   S      L  +  L +G R S++       +     + +  K   + +V
Sbjct: 179 EIKTLLEYLNESNSSSVLLVAKICLATGARWSEAENLEGAQVTPYRITYRNTKNKKVRSV 238

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291
            + +     +        T                  F+    KAG++       H +R 
Sbjct: 239 PISEKLYNEIPKKRGRLFTPC-------------RKTFERVIQKAGIDLPEGQCTHVLRH 285

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     L    G   +     Y   A
Sbjct: 286 TFASHFMMNGGNILVLKDILGHSDIKMTMIYAHFA 320


>gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 30/294 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHI 119
           +P    + L   +  Y            +  S     ++ +R   +       ++T   +
Sbjct: 24  TPEHVESALMVFVKGYLDWLAVTGRTEQTVRSRFVALERFVRWCAERSLSRPQELTRSVL 83

Query: 120 RSGV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +           + +  T  +    LT +R   +W  R+ +V  N    +  P+     
Sbjct: 84  EAYQRYLYLYRKQDGKPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELVLPRAPKLL 143

Query: 171 IRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +        +      +     G++ R   E L  +G+R  +     V  +  +  ++ 
Sbjct: 144 PKVVLSVVQVERLMDQPDVGGLTGARDRAILEVLYSTGMRRMELIGLTVSDIDLSGGTVM 203

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWF 273
            ++        +P G      +                  T F+ +  +     + S   
Sbjct: 204 IRQGKGRRDRYIPLGERACYWVEWYCDQIRPSLAVRADEWTLFLTDYGEPFGKGRLSDLV 263

Query: 274 KAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           K     AG+ + A H +R   AT   + GA    + A  G   +   + YT+ A
Sbjct: 264 KRYMEMAGIREGACHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVA 317


>gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3]
 gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3]
          Length = 346

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 119/343 (34%), Gaps = 24/343 (6%)

Query: 12  TKERTRHGKIIYY-FRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            K+    GK IYY +    G  ++     P +        +       +R         P
Sbjct: 12  VKKTLTSGKTIYYCYAWRGGPLLKNDKGEPIQPGDHLIKSAFRRAHDERRA------PSP 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVE 124
           T L  LI+ YR S+ +    + +R  ++ Y D+I  +       ++    T    +   +
Sbjct: 66  TDLSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWRD 125

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S   TP +A      +  +  +A  +  +++N      R  R T   R W+  D+  F++
Sbjct: 126 SLADTPRTADFAWMVLVRVLSFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAFEA 185

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                SQ RLA +  L++G R  D  R                       +        +
Sbjct: 186 V--APSQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQ-SKTKARVLVPMGYLADV 242

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           L            +       +  F+  ++    KAG+ + + H +R  + T  A AG T
Sbjct: 243 LCSQKGTGAILRTSRGS-AWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAGCT 301

Query: 304 AHELMATYGWK--TVDQA--ETYTKGADRIRLGIKNSRRISSV 342
             E+ A  G     V+      Y  G  R  L     R++ +V
Sbjct: 302 VPEIAAVTGHSLKDVEAILDMHYLGG--RTELAASAMRKMVAV 342


>gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5]
 gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5]
          Length = 420

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNR-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVGTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 303

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 88/283 (31%), Gaps = 19/283 (6%)

Query: 68  PTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG 122
           P T   L   +  Y         + ++  ++     Q+            +     +   
Sbjct: 5   PMTPDELPHHLDPYLAELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQSVGRNDFVAVLKK 64

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +  +  S  + L++ R    + +RQ+ +  +P + ++ PK      +    E + + 
Sbjct: 65  LSQQNQSERSLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRL 124

Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237
                       +    FE L  SGLR ++        +  +  +     K G    V L
Sbjct: 125 LDHAPAENGLDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVRGKGGKHRQVPL 184

Query: 238 PDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGV 289
               +  L      +         F  +  +++   Q     +  A K G   + S H +
Sbjct: 185 GSRSVSALRAYLPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHMM 244

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           R   A+    +      +    G   +   + YTK  D  RL 
Sbjct: 245 RHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTK-LDFDRLA 286


>gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 324

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/320 (10%), Positives = 87/320 (27%), Gaps = 47/320 (14%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
            ++      + ++     L  N++ ++ +     I  + G +    I    ++  +    
Sbjct: 1   MSVANYFDYWFENYVEKKLKYNTQKNYLNIINKYIKPEIGKYYLSSIGPSRLQDLMNKLP 60

Query: 128 HT------PSSAIQFLTSMRVLFK---WAVR----QEYVAINPCLSVERPKRKTEGIRPW 174
           +         S    LT ++  FK   +  +       V +       +PK+  + ++  
Sbjct: 61  NGFDRPLAKHSVEIVLTVLKGAFKRAVYPWQAINSNPMVYVEMPAFENKPKQTRDDMKII 120

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
           T +  Q+   F    S  RL      ++GLR  + C      +  +  +I   +      
Sbjct: 121 TMDQYQKILEFNPPSSPFRLPLMIGFHTGLRRGEVCGLQWSDISLDERTITVDRIMLQDK 180

Query: 232 ---------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                          +                      ++ + +
Sbjct: 181 HGIQLGTPKTQASFRTIAIDDVLAAELRRARKSQSENKLRYGKFYYDSTFVCTKDNGEPV 240

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYT 323
                         + G++ + H +R   AT+  + G     +    G   +    + Y 
Sbjct: 241 TPNSIKWHSSRIKKELGIDFNFHSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYV 300

Query: 324 KGADRIRLGIKNSRRISSVV 343
                 ++  +     +  +
Sbjct: 301 HVT--RKMKTEAVDIFAQRL 318


>gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666]
 gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666]
          Length = 358

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 82/297 (27%), Gaps = 39/297 (13%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
           L+  Y +       LA  +   +     ++   +        ++ + H+R  V       
Sbjct: 25  LVERYLEHVRVEKRLASRTVELYALDLHKLEANARQAGVALTEVHSTHMRRWVAQMHGAG 84

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQ 180
            S       L+  R  + W  R+  V  NP   V  PK      +  + +          
Sbjct: 85  RSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSPKVAKPLPKALSVDEAVQLASYQS 144

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGTI 232
             +      ++ +   E L   GLR  +           A      +   +    K    
Sbjct: 145 DDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRASAQARGWVDMDAAEAHVLGKGSKR 204

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKAKA 277
            +V +    ++ L      +  +                      ++      +  K ++
Sbjct: 205 RSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQALFISQRGARLTPQHIRLRLKRRS 264

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            KAG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 265 LKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 320


>gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 329

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 84/313 (26%), Gaps = 18/313 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+         GRR R  +  +        +          +   P+ +   L  L + Y
Sbjct: 9   GRWKVDVEPIKGRRFRKTFKTKGEAQRFEATCRANCIDSPAWTPKPKDRRR-LSELCTRY 67

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
            +  H  +LA     +       + +  GD    K+T                   +   
Sbjct: 68  HE-LHGHALADG--AAILRTLQNLAKDLGDPIAVKLTGNAFCETRSELLKAGIQGKTMNN 124

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193
            L  ++ LF    R   +     L   RP R  E    +             +       
Sbjct: 125 RLGYLKALFNELHRLGDIDYPNPLVNVRPLRLQERPISFLSTCQIAELLDALDDRTTSPG 184

Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             L     L +G R  ++     + ++N + +    K+    ++ +     K L +    
Sbjct: 185 IGLIARVCLSTGARWGEAQALTPERVRNGMVTFANTKSKRTRSIPIDRELEKALQIYFKR 244

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
              F             FS      + K    ++ H +R   A+     G     L    
Sbjct: 245 HGLFTNCML-------TFSRVLDKTSIKLPAGQATHVLRHTFASHFVMRGGNILTLQKIL 297

Query: 312 GWKTVDQAETYTK 324
           G  ++     Y  
Sbjct: 298 GHTSLAMTMRYAH 310


>gi|327393403|dbj|BAK10825.1| site-specific recombinase, phage integrase family hypothetical
           protein [Pantoea ananatis AJ13355]
          Length = 337

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 102/336 (30%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64
           +PP V +     GK  Y F   +G  +RL            AY + +  +   + Y +  
Sbjct: 13  MPPRVYR-----GKSAYEFHPKNGGAMRLCDLGSPQSKVWAAYEALINETPDIKNYKS-- 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                    L   + KS  +  LA  ++  +  Y  +++   GD     I  +HIR  ++
Sbjct: 66  ---------LAERFFKSPDFYELAAETQKDYRKYSLKVLSVFGDMPSDSIKPEHIRKYMD 116

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A +    M  +F+W   +  V  NP   V+   +  E  R     D +   
Sbjct: 117 KRGLRSRTQANREKAFMSRVFRWGYERGLVKQNPTKGVK---QFKEKARDRYVTDAEYSS 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +       ++A E       R +D        + +    IK  KT              
Sbjct: 174 LYSVAPDMVKIAMELAYLCCARQADILELKKSQIIDEGILIKQSKTSVSQIKGWSPRLQD 233

Query: 244 LLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289
           ++A        + +            K     F+  +      A         + + H +
Sbjct: 234 VIAQASTLPLKSGMSSIFVIHQPSGAKYTRDGFNSRWLKAKQDAKAAFPELDFDFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +    +         +      G K V Q   Y + 
Sbjct: 294 KAKGISDL---DGNIYTKQEISGHKDVKQTARYNRK 326


>gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas
           gingivalis W83]
 gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit
           interface protein [Porphyromonas gingivalis W83]
          Length = 400

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 29/291 (9%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
           I  +     +    +  +   +    ++      +     F+  +      R+ + S   
Sbjct: 8   IERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLME 67

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L++++  +K+ V+   +  +P   +  PK++          +M++  + 
Sbjct: 68  AGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKVLNK 127

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                  E  + RL  E L   GLR S+        +++    I+               
Sbjct: 128 PIREDDFEAVRDRLILETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGK 187

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288
              ++ D +  +        + FF++ D + +         +     A V      S H 
Sbjct: 188 RLQDMIDNYRNIREEKVGKSDFFFVSLDGRPLTGEVVYKIVRTAL--ANVPHLTKRSPHV 245

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
           +R   AT   + GA    +    G  ++     YT    +++R       R
Sbjct: 246 LRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYNAHPR 296


>gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1]
 gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
          Length = 327

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 94/317 (29%), Gaps = 18/317 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   G+         G+R R  +  +        +A         +   P+ +   L  L
Sbjct: 5   KLPDGRWFVDVEPIKGKRFRKRFKTKMEAQQFEATARQKCAENPCWTLRPKDRRR-LSEL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPS 131
           +  + +  H  +L+   R    +    + +  GD     +    +   RS   +   +  
Sbjct: 64  VELWYE-LHGQTLSNGHRCV--AILRLVAKDLGDPVAVSLEPAKVARLRSRQIANGMSGK 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187
           +A   L  ++ ++    +   +     +   RP +  E    +  +             +
Sbjct: 121 TANNRLGYLKSMYNELRQLGVIDYENPVGRMRPLKLQERPLSYLTKHQVSELLTALDART 180

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               P++     L +G R  ++     + L+ N       K+  + +V + +     L  
Sbjct: 181 TSPHPKMVARICLATGARWGEAQALTPERLKGNTVIFANTKSKRVRSVPISEELGADLRR 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                  F             F +   + + K    +++H +R   A+     G     L
Sbjct: 241 HWQTHGPFTNCLGV-------FRLVLLSTSIKLPKGQASHVLRHTFASHFIMNGGHIVTL 293

Query: 308 MATYGWKTVDQAETYTK 324
               G  ++     Y  
Sbjct: 294 QHILGHASLSMTMRYAH 310


>gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
 gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD
 gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40]
 gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686]
          Length = 309

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 84/289 (29%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---- 283
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
 gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 29/356 (8%)

Query: 11  VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +  +  R+GK  Y     Y   G     R           A  S         E      
Sbjct: 28  LYLDIYRNGKRTYEYLKLYLIPGTDSNTRRQNEITMAAANAIKSKRIIELTSGEAGIVNH 87

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV 123
                L   +  Y +            I        I+++         ++     +  +
Sbjct: 88  TDKVYLLDWMQTYLEYQEKRDKKG---IGQIKAVTHILKEYAGERFILDRVDLAFCQGYI 144

Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171
           +    T          S+   +          AVR + +  NP       E+PK      
Sbjct: 145 DYMLTTFRPKGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVR 204

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG 230
              T E+++   +   +  + + A+ F  + GLR SD      +++  +    +      
Sbjct: 205 SYMTIEEVRALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQ 264

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                       + L   P  ++    +        +  + + +  A  AG+ K  + H 
Sbjct: 265 KTKEPIYLPLSNEALKWMPEREDKAADDPVFNL--PSNINQYLRPWAEAAGITKRFTFHT 322

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            R   AT+    GA  + +    G  +V   + Y K  ++ +   +    ++ + D
Sbjct: 323 ARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376


>gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 286

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 16/279 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           +++++       LA  +   +      +   +    G+ D   +T+  +           
Sbjct: 6   LNDFQNHLLGRGLAPATAGVYLGHVRRFLAWVEGTHGEADVAAVTSLDVADYRRHLLKDR 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P++    L ++   F WA     V  +P   V R + +    R  T+ ++        +
Sbjct: 66  KPATVNNALDALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAVQK 125

Query: 189 GS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242
               + +     LL++GLR S++     Q            ++  K      V L     
Sbjct: 126 HGSKRDQALVTLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYREVPLNVTAR 185

Query: 243 KLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           K L        G    F    +  +        F      AGV  + H +R     +  D
Sbjct: 186 KALQDWLAAHPGGPWLFPGRGEAPLTRWAAEKMFAKLGRLAGVEVTPHKLRHTFCKMLVD 245

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           AG +   +    G   ++    YT+ G   +   ++   
Sbjct: 246 AGESLDRVAVLAGHANLNTTARYTRPGVQDLERAVEKLA 284


>gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis]
 gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis]
          Length = 314

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 89/306 (29%), Gaps = 40/306 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
            +  Y           N+   +E+   + I+   D +        IT   ++   +    
Sbjct: 6   FMENYIIWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLME 65

Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     + S+    +  ++  FK+         N    V++PK + +    W    
Sbjct: 66  VAKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRI 125

Query: 179 MQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +     +            +  +       +L +GLR S+  +  +  +++   S++  
Sbjct: 126 SKNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDG 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAK 276
           K G    + +    +  +      ++      + Q            ++       FK  
Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               G+   + H +R          G     +    G   ++  + Y     + +   + 
Sbjct: 246 RKHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEA 303

Query: 336 SRRISS 341
             +++S
Sbjct: 304 VEKLAS 309


>gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis
           Fe/C-56]
 gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 23/264 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ NS  ++       ++ S      +I+   +      +  R+ + S+  + L +++
Sbjct: 22  RGLSRNSISAYSQDITLFLKISAITSIEEISQDSVYLFVQQLHKRQESESTLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRL 194
           V F++    E +   P +  E PK         T +         +  ++     ++   
Sbjct: 82  VFFRFLKETELLDHPPLI--EHPKIWKRLPSVLTPKEVDALLAIPKTSETSPMISARDSA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---KLLAMTPIG 251
               L  +G+R S+ C   +  + ++   +  + + T +              L      
Sbjct: 140 ILHTLYSTGIRVSELCGLCIGDVSDDFLRVTGKGSKTRLVPLGERACKTIDAYLCPFRET 199

Query: 252 KETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
            +          ++                  A +    + S H +R   AT   D  A 
Sbjct: 200 FQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQITHKQVSPHSLRHAFATHLLDNKAD 259

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +   E YT  A 
Sbjct: 260 LRVIQEMLGHARIASTEIYTHVAS 283


>gi|307704159|ref|ZP_07641083.1| phage integrase family protein [Streptococcus mitis SK597]
 gi|307622265|gb|EFO01278.1| phage integrase family protein [Streptococcus mitis SK597]
          Length = 384

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+  +       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
 gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus
           NVH0597-99]
          Length = 370

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 110/370 (29%), Gaps = 42/370 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
            K+  + GK  Y    G           +         A    T     +++      + 
Sbjct: 5   VKKDKKTGKYFYIVDIGIDPLTGKRKQKKKRGFITKKEAENALTKLLSEVHAGTYVEPSK 64

Query: 71  --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
                 +  +  +    S+ + +    + Y   +II   G+    K+T+ H+++ V S +
Sbjct: 65  LLYGEYLESWFNTKK-HSVGIQTAKVLKGYLKSRIIPTLGNIKLAKLTSLHMQNYVNSLR 123

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + +  +R   + A+  E +  N     + PK   E +  W + ++Q F  
Sbjct: 124 DDGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAAKTKLPKGDKEELIVWNEHEVQSFLK 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
                S+  + F   L +G+R  +      + +      +   +T +             
Sbjct: 184 AAQ-DSRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242

Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                + LP   +  L                     +          +N         A
Sbjct: 243 SSLRKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
              KA V K   H +R   AT+    G     +    G   +    +TY+       +  
Sbjct: 303 LIKKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360

Query: 334 KNSRRISSVV 343
              ++I  ++
Sbjct: 361 DVVKKIEEML 370


>gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 373

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 18/313 (5%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
            +P P  +T     +  ++ +      +   +    TL  L   Y               
Sbjct: 51  TIPDPETATASVQVVKTVSTTDAPTGEVLGQKPVGITLLELGHRYLDHMRASGRTDKHIR 110

Query: 94  SFESYF-DQIIRKSGDFDYRKITTK--HIRSGVESRKHTPSS--------AIQFLTSMRV 142
           + E    +Q +   GD     +T +   ++  +  +  + ++          ++   +  
Sbjct: 111 NIERLLENQFVPVIGDKPVDSLTYQGDMVQFILHFKGVSGTTKKTRSQYTVNKYCDYLSF 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +F + +      +NP  + ++PK +   ++  T +D ++  +      +  +   F L +
Sbjct: 171 IFNFGIDNGLTKVNPLKNWKKPKVQPWDLK-LTLDDAKKIMACAEPHLRWAMEVCFNLGT 229

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINND 260
               S+      +++     +++   T T    TV +   F+K L       ++ ++   
Sbjct: 230 RPGESELLSLRWENIDFTAGTVRIYATKTKTYRTVPINPSFLKRLEEEKASSQSEYVIEY 289

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
             +   T     FK    +AG+      + +R   AT     GA    +    G  TV  
Sbjct: 290 MGRK-LTTIRKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMGHSTVKL 348

Query: 318 QAETYTKGADRIR 330
            A+TY    +  +
Sbjct: 349 TADTYYHYMEGEK 361


>gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 276

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPS 131
           + ++         ++N+  S++    Q +         +IT + I    E       +  
Sbjct: 4   LDKWIIKMREEDKSINTIESYKGDVIQFMNFIEKEP-EEITKEDILKYKEYLALNEMSVK 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEG 189
           SA +   S+   F +   +    +   +  ++ + +        KED +     +     
Sbjct: 63  SANRKYISVNSFFSFLQTELEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVASSYND 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +    F  L Y+G+R S++ +     + N++  IK + +     V +P     +L    
Sbjct: 123 YRAVAIFNTLFYTGMRISEALQLKTTDISNDVVVIKGKGS-KHRNVFIPQKLKSILNTYM 181

Query: 250 IGKETFF----INNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
           I +            K  +N        K  A  AG+      AH  R        + G 
Sbjct: 182 IYRLPCKSDALFTGKKGPINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLYCLTLIEKGL 241

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
           T   +    G   ++    YT+ 
Sbjct: 242 TIDTVADLAGHSNINTTRIYTRK 264


>gi|29566149|ref|NP_817718.1| gp41 [Mycobacterium phage Che9c]
 gi|29424874|gb|AAN12601.1| gp41 [Mycobacterium phage Che9c]
          Length = 400

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 108/377 (28%), Gaps = 59/377 (15%)

Query: 1   MTPSLRLPPFVTK---ERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSAL 51
           M     LPP + +   E    G+ +  +          G+R RL   + +        AL
Sbjct: 1   MAERRHLPPQIKRVELEARSGGRPVVRYELIVDVGVVDGKRKRLRRRYPTE--KEARDAL 58

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
                +            T++    ++       + A ++   +E     +I + G+ + 
Sbjct: 59  AQIRGQVAQGTYVHPTQRTVREACDDWLAGKRAANRAESTVDGYEEKLTVVIEQLGEIEI 118

Query: 112 RKITTKHIRSGVESRK--------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +K+T +H+   V + +               +P S    L  +  + +   +Q +   N 
Sbjct: 119 QKLTKRHLDDLVTALREGGLPSPNGKPRKPWSPRSVNYLLGLLVSILESEQKQGHTVRNV 178

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              V+R +       P T E   +       G +  +A+E  L  G R ++        +
Sbjct: 179 AALVDRIEANPTPPDPLT-ESEVETLLAHIAGDRYAIAWELALA-GFRLAEISGLRWCDV 236

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------------LLAM 247
             +  ++  Q T      +  +   K                               L  
Sbjct: 237 DLDARTVTVQNTRLQRGKKRIEKTPKSRASRRELPLPDDLFAAFKAARKIQAADQLRLGE 296

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                    +N     +        +      AG+ +   H  R    T+    G     
Sbjct: 297 AYEASGYVVVNEAGTPLTPNAIENRWARVLKAAGLRHVRLHDARHTCGTLMHLRGVPTAL 356

Query: 307 LMATYGWKTVD-QAETY 322
           + A  G  +     +TY
Sbjct: 357 ISAWLGHASKAFTLQTY 373


>gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175]
 gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175]
          Length = 451

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 112/313 (35%), Gaps = 15/313 (4%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHW 84
             +  R R+  P  +  + A     TG     + E+        +     + +  K   +
Sbjct: 49  IDNRTRTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASSRFDVFVEQTWKPMIF 108

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRV 142
                +++ S       +++   G +    I  + +++  +    T   +A + L +++ 
Sbjct: 109 EHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQS 168

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFE 197
           +FK A+RQ +   NPC+ + +  ++    R  +  +MQ+      +     GS  + A  
Sbjct: 169 VFKLALRQGHCLTNPCIGIRQ-NKRRVLNRFLSVAEMQRLSVALDECETVGGSIAQCADI 227

Query: 198 FLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L   +G R S+      ++++ N   +   KTG  +           +      K   
Sbjct: 228 LRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVD--ILSRYHCKANT 285

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   KQ  + +     +     + G+ +   H +R   A+ +   G +   + +  G K
Sbjct: 286 ELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHK 345

Query: 315 TVDQAETYTKGAD 327
            V     YT   D
Sbjct: 346 KVTMTLRYTHVGD 358


>gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15]
          Length = 329

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 86/298 (28%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I+ Y  +  +   L+ ++  S+      +     R +   D  ++   HIR  +      
Sbjct: 20  IAAYLDALKFERKLSEHTLASYARELAVLQQLGARFAAGIDPMQLQPHHIRRMMAQLHGG 79

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  +KW   R   V  NP   +  PK      +  + E        
Sbjct: 80  GLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALMEH 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 E  + R   E     GLR S+     ++H +   ++  +        V +    
Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREVTVLGKG 199

Query: 242 MKLLAMTPIGKETFFINNDKQ-------------------------KMNATQFSIWFKAK 276
            K   +    K    +                              ++   Q     K  
Sbjct: 200 NKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHALFLSARGKRLTQRQIQTRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 321

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 85/279 (30%), Gaps = 30/279 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---------ES 125
           Y            +  S     ++ +R   +       ++T   + +           + 
Sbjct: 7   YLDWLAVTGRTEQTVRSRLVALERFVRWCAERSLSRPQELTRSVLEAYQRYLYLYRKQDG 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  T  +    LT +R   +W  R+ +V  N    +  P+      +        +    
Sbjct: 67  KPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELVLPRAPKLLPKVVLSVVQVERLMD 126

Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +     G++ R   E L  +G+R  +     +  +  +  ++  ++        +P G
Sbjct: 127 QPDVGGLTGARDRAILEVLYSTGMRRMELIGLTISDIDLSGGTVMIRQGKGRRDRYIPLG 186

Query: 241 FMKLLAMTPIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNKSA-H 287
                 +          +            +  +     + S   K    +AG+ + A H
Sbjct: 187 ERACYWVEWYCDRIRPSHAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMERAGIREGACH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + GA    + A  G   +   + YT+ A
Sbjct: 247 VLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVA 285


>gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR]
 gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR]
          Length = 300

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 81/284 (28%), Gaps = 23/284 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGV 123
           L     ++ +       LA  +  +++      +         +     +        G 
Sbjct: 3   LHDWQQKWMQQLQGERGLAELTLKNYQRLIAADLTALELQKITEPKALRVPVIERLLVGW 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQ 180
                   S    L++ R   ++ V    +  NP +SV  PK      +     +   + 
Sbjct: 63  RRNGLGERSIALKLSAWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLDVDSISHLL 122

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
              +      +     E L  SG+R ++     + H+ + +  ++          V    
Sbjct: 123 DLPTDDDLAIRDAAMMELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSKTRIVPFGR 182

Query: 240 GFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NKSAHG 288
              K L      ++ +     +         Q+++             + GV  +   H 
Sbjct: 183 CAEKALKKWLSVRQAWLNQKPELALFVSKRLQRISPRTVQQRLNYWGKQQGVVGDLHPHK 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R   A+   ++      +    G   +   + YT   D  RL 
Sbjct: 243 LRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTH-LDFKRLA 285


>gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 89/306 (29%), Gaps = 40/306 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
            +  Y           N+   +E+   + I+   D +        IT   ++   +    
Sbjct: 6   FMENYIVWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLME 65

Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     + S+    +  ++  FK+         N    V++PK + +    W    
Sbjct: 66  VAKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRI 125

Query: 179 MQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +     +            +  +       +L +GLR S+  +  +  +++   S++  
Sbjct: 126 SKNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDG 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAK 276
           K G    + +    +  +      ++      + Q            ++       FK  
Sbjct: 186 KGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTI 245

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               G+   + H +R          G     +    G   ++  + Y     + +   + 
Sbjct: 246 RKHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEA 303

Query: 336 SRRISS 341
             +++S
Sbjct: 304 VEKLAS 309


>gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi]
          Length = 267

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 29/240 (12%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            SR ++P++  + ++++R L+ +      +  +P  +++  K      +  T +++ +  
Sbjct: 17  NSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLL 76

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
                    EG +       L  SG+R S+    G   +++ +   ++            
Sbjct: 77  CAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAG 136

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         I   L      ++      +  F      Q ++  +     KA A 
Sbjct: 137 RERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAI 196

Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
            AGV+    S H +R   AT   + G+    +    G  ++   + YT  A DR++  ++
Sbjct: 197 VAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQ 256


>gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 387

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 106/346 (30%), Gaps = 43/346 (12%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
            +RK    +         +F+ A    +       E  ++      ++      Y K+  
Sbjct: 23  RYRKTKTIKCSFTGLKLKSFMNAKELDVIQEL-YAEIGSASYAANLSIFNFGQWYIKNHK 81

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSS 132
              L  N+   + SY   QI    GD   + IT + ++                 + P +
Sbjct: 82  ---LEENTISWYNSYLKNQINSFFGDKPIKNITERDVKDFNNHLMNYISERTKKPYAPKT 138

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +T ++ LF  AV +  +  NP  +V+  K +      +      +    ++     
Sbjct: 139 IKHNITVLKSLFNVAVEEGILEKNPAENVKNVKVQKSVQDKYYSPSEMKKALKYAFKEDD 198

Query: 193 RLAFEFLLYS---GLRCSDSCRAGVQHLQN----------------NIFSIKTQKTGTII 233
                 ++ +   GLR ++        ++                   +  K  K     
Sbjct: 199 VNFILCIVLTVTYGLRPAELRGLKWTKIEWTSKRVMIDDTITVVNYYGYDEKGTKNNEPR 258

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNK- 284
              L     +LL +    ++  F    +  +++          F   +K    K G+   
Sbjct: 259 VGILTPMIEELLKLQIKEQKKLFGKKCEFVVHSTTGDHLANKTFRDNWKKFCKKIGLRYL 318

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             +G+R  +AT+ A    +   +    G K +   E Y    +  +
Sbjct: 319 PPYGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEK 364


>gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653]
 gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13]
 gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653]
          Length = 333

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 119/287 (41%), Gaps = 14/287 (4%)

Query: 6   RLP-PFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTPK 57
           R+P  + +++  RHG   +Y R     + R+              F   Y   L G   +
Sbjct: 14  RVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGRGE 73

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           +  +   R +P +++WL+  Y +S  + S +  ++   +S  ++     G+  ++KI   
Sbjct: 74  KA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIRKS 132

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I +    R  TP +A + +  ++ LF WA+  E     P   V +  +   G   W++ 
Sbjct: 133 DIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTKIHQSP-GFHTWSEA 191

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTII 233
           ++ ++++ +  GS  RLA E +L  G+R SD  + G ++L  +      +    K    +
Sbjct: 192 ELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEKGSGKYAQSL 251

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           ++ + D   + L      + TF I    +  +   F    +    + 
Sbjct: 252 SLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNKMRQWVQRC 298


>gi|29377419|ref|NP_816573.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344886|gb|AAO82643.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 381

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 107/380 (28%), Gaps = 49/380 (12%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y F          G+ +        T   A ++         E     
Sbjct: 4   INKYTKKDGTTAYMFNAYVGRHPKTGKNVYRKRQGFKTKKQAQIALAEILKDIEENGLDN 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           +    T K L  ++        +  +S    + +    I+   GD    +IT    +  V
Sbjct: 64  KPSVLTFKQLYEKWLAQQRLT-IKPSSIAVNKRFAEKHILPYLGDCKLDEITVIQCQDLV 122

Query: 124 ESRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +       F   +   + ++    E +  NP      PK K E  +       +  
Sbjct: 123 NKWFNQGHKQYSFYRKLTAQIMRYGESMELMNTNPMRKTILPKWKEEETKLEYYTKQELN 182

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221
             F         +    F  L ++G R S+      + L                   NI
Sbjct: 183 HFFDCLKQYGNFKQLAFFRLLAFTGCRKSEVLALQWKDLDITNKSVYIGKTVAQDEFYNI 242

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------DKQKMNA 266
            +   +   +  ++ L +  ++++A     + + +                    + ++ 
Sbjct: 243 LTQTPKTASSTRSISLDNETLQIMAKWRTIQRSDYFQMGFNTSSEEQYIFTNNHNKLLSP 302

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              +IW      K  +   + H  R   A++   +G    E+    G  +       Y+ 
Sbjct: 303 NVVNIWLNCLIKKYDLPSITPHHFRHTHASLLLQSGVPIKEVAERLGHTSTAITDRIYSH 362

Query: 325 GADRIRLGIKNSRRISSVVD 344
                +   K + + +  V 
Sbjct: 363 VMPEEK--EKTADKFAQFVG 380


>gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 87/292 (29%), Gaps = 30/292 (10%)

Query: 62  NSPRKKPTTLKW-LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114
                   T+   LI  +  +     +++ N+  ++        +          D    
Sbjct: 2   ARQADPAQTVADPLIMMFLDALVAMRAVSANTLAAYRRDLADTSQLLHASKTTLTDCNAD 61

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             + + S    R  +  S  + L+++R    WAV  +    NPC  ++ P       +  
Sbjct: 62  DLRQVISLWHQRGLSARSVARRLSALRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSL 121

Query: 175 TKEDMQ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227
           +++++             +   +     E L  +GLR S+     V   +    SI    
Sbjct: 122 SEDEVMKLLAAANAMQPPALSCRAVAMLEILYATGLRVSELVHLQVSQFRRQPDSILVAG 181

Query: 228 KTGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFK 274
           K G    V L     +  A                              M   +F+   K
Sbjct: 182 KGGRERLVPLGLAAKRAAADWLELRDATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLK 241

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             A  A ++    + H +R   AT   + GA    L    G   +   + YT
Sbjct: 242 TIAVAAQIDPRRVTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYT 293


>gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 87/279 (31%), Gaps = 25/279 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRK 127
           +SEY          + N+  ++     + +    D    D   +T++H+      +  + 
Sbjct: 22  VSEYLTYLQLERGSSRNTVDAYARDLAKYVTYLADTGVNDLGSVTSEHVAGFIEHIAHQN 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              +S  +   ++R L  +   +     +P   V+ P       +  + + + +      
Sbjct: 82  FAVTSRARITVAVRRLHHFTAGETG-GTSPADDVQPPTDTMRLPKALSVDQVSRIIHAAG 140

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                     +     EFL  +G R S++       +  +    +          V L  
Sbjct: 141 DPQSADPAQLRAVALIEFLYATGARISEAVGVDRDDVDVDAGIARVYGKGNKERLVPLGS 200

Query: 240 GFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
             ++ L          +         N    +++        K  A  A V + +AH +R
Sbjct: 201 HAIEALGAWLTRGRPAWAASSPAVFLNARGGRLSRQSAWAIVKKAAEIADVPRVTAHSLR 260

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + GA    +    G  +V   + YT+   + 
Sbjct: 261 HSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQA 299


>gi|312193924|ref|YP_004013985.1| integrase family protein [Frankia sp. EuI1c]
 gi|311225260|gb|ADP78115.1| integrase family protein [Frankia sp. EuI1c]
          Length = 397

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 104/352 (29%), Gaps = 40/352 (11%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG- 85
              G+R R    +  T   A    +               KP T+   +S +        
Sbjct: 45  WIDGKRRR-RTVYGRTQKEARGK-MNALREAAGKGQDLAAKPQTVAEWLSYWLDEIKGHD 102

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142
               ++   +    D  I+   G     K++   +R    +R+    P+S  +    +RV
Sbjct: 103 GTRPSTLSRYRYAIDGHIVPVLGKIRLDKLSPADVRRLHAARRDSMKPASLAKIHAVLRV 162

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
               A R + V+ N   SV+ PK      R    ED ++F      G +    F   L  
Sbjct: 163 ALADAERMDLVSRNVAKSVQPPKLGDSDPRDLAVEDARRFLEVA-AGDRLEALFVVALTM 221

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGTIITVELPDGFMKLLA 246
           GLR  +        +  +  +++                T+  G+   V +P   ++ L 
Sbjct: 222 GLRRGELLGLRWDDVDLDAATLRVVRSAQRVSGTLRLVDTKTRGSRRPVPIPAMTLEALK 281

Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN-KSAHGVRK 291
                ++    +  K                +     +   +    +  +     H  R 
Sbjct: 282 RHRKRQDQERADAGKAWKENGLVFASTVGTLIEPRNVTRRVQQLRGRVNLPTLRLHDFRH 341

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRISS 341
             A+    AG     +M   G  T+      Y     +R+R       ++  
Sbjct: 342 ACASFLLAAGIEPRTVMEILGHATMRMTMERYGHALPERLRAASDAMDKLMG 393


>gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 85/296 (28%), Gaps = 32/296 (10%)

Query: 67  KPTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDF----DYRKITTK 117
              T    ++ + +       L+  +  ++      Y   + R  G+     D   +T  
Sbjct: 9   PDLTAAGALAAWLEHLAHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLPDLGTVTAA 68

Query: 118 HIRSGVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +R+ +  R+         S  Q L+++R    +  R+          V  P+ K    R
Sbjct: 69  ELRAHLAERRSGDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGPRVKATLPR 128

Query: 173 PWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           P + +  +               E  +       L   GLR S++               
Sbjct: 129 PVSADQARGLLAEPGLDPDVEPWEALRDTAVLSLLYGCGLRISEALSLTRADAPLPETLR 188

Query: 225 KTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            T K G    V +       +              +  F       ++A       +   
Sbjct: 189 ITGKGGKTRLVPVLPVVRSAVDAALAAQPFPLSPPDALFRARRGGALSARHVQATVQRLR 248

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + G+    + H +R   AT    AGA    +    G  ++   + YT   D   L
Sbjct: 249 GRLGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-AVDAAHL 303


>gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
 gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01]
          Length = 302

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 25/276 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126
           + ++          +  + +++++   +  R         G    R+   +     +  R
Sbjct: 8   LDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAER 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           K   SS ++ ++S+   +++  R++ VAI+P   +   + + +  + + + +++Q     
Sbjct: 68  KLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQVFDSL 127

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                   +    FE    +G+R S+     +  L  ++ +I    K      V   D  
Sbjct: 128 KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKT 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            K L                ++  F+NN    + +       +    +AG+      H +
Sbjct: 188 KKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G  ++   + YT  
Sbjct: 248 RHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
 gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1]
          Length = 319

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 80/277 (28%), Gaps = 30/277 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136
              + ++  ++E    Q +    D+        D   + T  +R  + +R+   + A   
Sbjct: 28  RRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRGFLAARRRDGAGAKTM 87

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFKSFW 186
              L  +R   +   R+   +     ++  PK+     RP T +D          F +  
Sbjct: 88  GRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDDAMAVTEEAGAFAADA 147

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL 244
              ++       L   GLR S++       L +          K G    V L    ++ 
Sbjct: 148 WIAARDVAILTLLYGCGLRISEALSLPGDALGDATARSMPVAGKGGKTRLVPLLPAVLEA 207

Query: 245 LAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
            A                F       +                G+    + H +R   AT
Sbjct: 208 AAEYRRRCPYPLTADNALFRGARGGPLQPQIVQRAMARLRGVLGLPDSATPHALRHSFAT 267

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                G     +    G  ++   + YT   D+ RL 
Sbjct: 268 HLLAGGGDLRTIQDLLGHASLSTTQNYT-AVDQARLM 303


>gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22]
 gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171]
 gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171]
 gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241]
 gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241]
          Length = 308

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 28/281 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRS---GVE 124
           LK+ + ++     + ++   +  S+     Q      + D      IT   ++      +
Sbjct: 6   LKFAVLDFLDDREFKNVTPKTLQSYRDILKQFEDFCLEHDVINVEDITASIMKRYILHYQ 65

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTK 176
            + +  ++    L  +R    + +  E +  NP   ++                 +    
Sbjct: 66  KKGNNATTTNSKLQRIRAFLNYMIECEVIKNNPAKKIQKAREDVRIDVFTDYHIKQMLNY 125

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               + +       +       LL +GLR S+ C      +     ++            
Sbjct: 126 YRRIKQREKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRESI 185

Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                          F +   +     E  F N   +++        FK  A        
Sbjct: 186 PVADKVLMELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKDV 245

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             S+H  R         +G +   +       ++   E Y 
Sbjct: 246 RLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYA 286


>gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2]
 gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII]
 gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2]
 gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII]
 gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866]
          Length = 337

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 28/330 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TT 70
            ++ T++GK +      +G+R+R  +  +   +  Y  A   +T   + +          
Sbjct: 3   VRKDTKNGKWLAEV-YVNGKRLRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPA 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L + + E+    H  +L+     +  +    +    GD    +   +      + R    
Sbjct: 62  LSFYVQEWFD-LHGKTLSDG--EARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      ++  +    +R +F              L   R  ++ E    +  E  
Sbjct: 119 FSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                   + S+     L     L +G R S++       +     +    K+    TV 
Sbjct: 179 IYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFVNTKSKKNRTVP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +      +L                       F         +    +  H +R   A+ 
Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G  T++    Y   A
Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319


>gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 280

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 96/274 (35%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           + + ++ R +A+  +L  ++  ++ +     +  +   D   +TT  + + +  +K    
Sbjct: 3   EEIFNQIRSAANKRNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDTFLTEKKLSGI 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + + +R  +K  ++  +   +            +     TK ++         
Sbjct: 62  SPETYNHYHSGIRFFYKKVLKMNWDDDDIPRMKRD----RKLPAVLTKAEISAILDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +   GLR S+        +   N    I+  K+ +     L D  +++L 
Sbjct: 117 NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILT 176

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                                  +      +F+  A +AG+  + S H +R   A+   +
Sbjct: 177 EYWFQCGRPRGILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + A  G +     E Y   +++  LGI
Sbjct: 237 SGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 270


>gi|315611996|ref|ZP_07886914.1| phage integrase [Streptococcus sanguinis ATCC 49296]
 gi|315315985|gb|EFU64019.1| phage integrase [Streptococcus sanguinis ATCC 49296]
          Length = 381

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 48/367 (13%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K  T+ G+  Y F+         G  +R             A    L     +  + N
Sbjct: 2   IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121
           +   +  T   +   +  S    ++   +  + +   + +I     D   ++I+  + + 
Sbjct: 62  NEDFQNPTFAEVAELWLDSYK-STVKPTTYQNVKKKLNVMIDSYFTDMKIQQISVAYCQK 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179
                 +       + + +  +FK+A   + +  NP   + +PK K        +TK+++
Sbjct: 121 VAIKLSNRYILYANYYSVISRIFKYAASLDIIKSNPLDKIIKPKNKPLKGKENYYTKQEL 180

Query: 180 QQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------- 223
            +F   +           F  L +SGLR  ++       +                    
Sbjct: 181 TEFLKVYKANCKPVDYTFFHLLAFSGLRTGEAIGLMWSDVDFENKRLSISRTAVVIGKKQ 240

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------SIWFKA 275
                +   +   + L D  + +L      +   +        + + +        W  A
Sbjct: 241 TVQDPKTKRSKRVITLDDETLNVLKFWKRQQIKEYFQAGVPYKHDSNYIFTNNSGGWLLA 300

Query: 276 KATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
              K  +             S HG R   A++  +AG TA  +    G   V    + YT
Sbjct: 301 ATMKVKLSRFFCKHKDLKKISPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQITLDMYT 360

Query: 324 KGADRIR 330
              D  R
Sbjct: 361 HINDNQR 367


>gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 365

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 42/303 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRK 127
           L   +  Y +       LA  +   +     ++    +    +   +   HIR  V    
Sbjct: 28  LPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQPAHIRRFVAQMH 87

Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
               S       L+  R  F+WA +Q  V  NP   V  PK      +    +D      
Sbjct: 88  SRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLAA 147

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
               ++     ++     E L   GLR  +     V   Q+     +             
Sbjct: 148 FSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAHVQ 207

Query: 230 ---GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSI 271
              G   TV +    ++ L                     +   FI    +++ A     
Sbjct: 208 GKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSVWT 267

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + +  +AG+      H +R   A+    +      +    G  ++   + YT+  D  
Sbjct: 268 RLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTR-LDFQ 326

Query: 330 RLG 332
            L 
Sbjct: 327 HLA 329


>gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7]
 gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii
           str. 7]
          Length = 284

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 31/270 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----------- 123
             E+  +      + N+   +       +      D R +TT  + + +           
Sbjct: 15  FDEFITALMIAGASENTIRLYSIAISDFLSYI-RKDPRTVTTYDLNNWIRNILSRETKSK 73

Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                E R+    +A  ++ ++    KW                 P+ + + IR  ++E+
Sbjct: 74  NENEIEKRRKKSVTARHYIIAVLRFLKWLGVDV--------KPTIPRIRRKEIRALSEEE 125

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
           + + K    +  + RL  + LL +GLR  +        +      I  +  K G    V 
Sbjct: 126 IVKIKENVKK-LKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTKNGEERIVF 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
             +   +LL       E   I  +             K    K G++   H +R   AT 
Sbjct: 185 FTEETARLLKSYLRNIEDNGILFNM---TYHALYRKLKRLGKKLGIDLRPHILRHTFATQ 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
           +   G     +    G K +   + YT   
Sbjct: 242 AIRKGMPLPVVQKLLGHKDIRTTQIYTHLV 271


>gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49]
 gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 82/263 (31%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
            + + ++ +++E   +   +       + D   +    IRS +        +  S  + +
Sbjct: 14  RNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNVNYSMIRSWIVCLVEQGISNRSINRKV 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192
           +S++  +K+ ++ + +   P    +  K   +   P+ + ++ +           + ++ 
Sbjct: 74  SSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYETEIDEVITLLDHPTDFKTARD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK----LLAM 247
           +L       +G+R ++     ++ +           K      + L    +K     L  
Sbjct: 134 KLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKERLIPLLPSVLKSVDLYLKF 193

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGVNKSAHGVRKFSATISADAG 301
                                +                  V KS H +R   AT   + G
Sbjct: 194 RKEIVVVDSDYLLLTNKGLKIYETLVYRLINGYFSTTSQKVKKSPHILRHSFATHLLNEG 253

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           A  + +    G  ++   + YT 
Sbjct: 254 ADLNSVKELLGHASLASTQVYTH 276


>gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISENLFEKIKKRGGKLVFPTLDYPL- 238

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|87162325|ref|YP_494623.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510228|ref|YP_001575887.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|87128299|gb|ABD22813.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369037|gb|ABX30008.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|315196780|gb|EFU27125.1| bacteriophage integrase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 345

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      ++  ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSVYSHLLEEK 330


>gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833]
 gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833]
          Length = 292

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 26/289 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG---VESR 126
                Y +      L+ ++  ++      +       G     ++    +R+        
Sbjct: 3   AAFERYLRLE--RDLSPHTVRAYLGDVASLFAHLRATGRERIAELDITDLRAWLGEQHRA 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + +   R    +  R+ ++A +P   +   K +       T+E  Q   S  
Sbjct: 61  GLSRTTLARRIACARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPP 120

Query: 187 SEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
             G     +     E L  +G+R S+ C   +  +     +I+         TV      
Sbjct: 121 VSGDPKELRDHAIMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQPA 180

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKA--KATKAGVNK----SAHGV 289
            + L    +     ++ +                    +    A  AGV        HG+
Sbjct: 181 ARALDAWCVRGRPQWVRDGTPPALFLGVRGGRIDPGTVRRVVHARLAGVPGAPGMGPHGI 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           R   AT   + GA    +    G  ++   + YT  + +R+R   + + 
Sbjct: 241 RHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAH 289


>gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
 gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix]
          Length = 316

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 86/270 (31%), Gaps = 21/270 (7%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           I+ +          + ++  +++     + R      + ++    +R     +  + H P
Sbjct: 22  IAAFLAHLRDVRGHSPHTIKAYQRDLAHLRR-LHSGPWDQLKAADMRRIAGQLARQGHHP 80

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----F 185
            S  +FL++ R  F   V    +  NP   +  P+      R    +  QQ  +      
Sbjct: 81  RSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGPRAGRALPRDLDVDQTQQALTPAEDLD 140

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244
               ++ +   E L  SGLR S+     +  L  +   ++   K     +V +       
Sbjct: 141 PILAARDQAMLELLYSSGLRLSELTGLDLTDLDLDAGLVRVLGKGRRERSVPVGRMARDA 200

Query: 245 LAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294
           L      +  +   +          Q++              +AG++     H +R   A
Sbjct: 201 LRNWLKCRGDWAAPDAHAVFVSRRGQRIGNRAVQRRVAEAGRRAGLDVRLHPHRLRHAFA 260

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   ++      +    G   ++  + YT 
Sbjct: 261 SHLLESSGDLRAIQELLGHANLETTQIYTH 290


>gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 28/285 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
              ++Y         A ++  ++ +  D          G+F         IRS +     
Sbjct: 4   EAFAKYLTLE--KKYAAHTVKAYLADLDAFSEYCREEQGEFALADQPYPVIRSWIIHLME 61

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     S  + + S++  +K+ +RQ  +  +P  + +  K       P+++ +M+     
Sbjct: 62  SGLNNRSVNRKVASLKSYYKYQLRQGRIDASPLAAHKPLKIPRRVEIPFSESEMEGLLGE 121

Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD 239
           W      E  + +L  E L  +G+R ++     +  +     +++   K      + L  
Sbjct: 122 WEPSEGYEAHRDKLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKERILPLLP 181

Query: 240 GFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHG 288
           G ++ +               +   F+ +   K+                 A   +S H 
Sbjct: 182 GIVREIRAYLELRGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKSKRSPHI 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRL 331
           +R   AT   + GA  + +    G  ++   + YT    A+  R+
Sbjct: 242 LRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRI 286


>gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
 gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540]
          Length = 322

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           +  I++Y  +      +  +   ++     +    G    +KITT+ +R       +SR 
Sbjct: 45  ESYIADYLAAKQVEGCSEKTINYYQVTLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRN 103

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++ +  +P   + + K   +    ++ ED+++      
Sbjct: 104 SSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLER-LRDHC 162

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              +     + L  +G+R  +        +  +        K      V         L 
Sbjct: 163 NSERDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQ 222

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                ++          +   Q+M+        K+   KAG+     H  R+  AT + D
Sbjct: 223 NYLAKRKDANSALFVSLHAPHQRMSINGIENRLKSLGKKAGIAKVYPHKFRRTLATNAID 282

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G + +D    Y 
Sbjct: 283 KGMPIEQVQKLLGHERIDTTLHYA 306


>gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70]
 gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 329

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 22/271 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSGVE 124
            + ++ +     +    +   + +      +   +              I    I     
Sbjct: 31  ALEKFLEDCEIRNCRPQTIQYYRNELSVFYKILREQGIEVNIYRMTPEIIKQNVILYMKN 90

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +     +    L ++R  F +  R++ ++       E    K       T    +    
Sbjct: 91  QKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKKAVPTFTKEEIHIL 150

Query: 185 ------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVE 236
                     G +       LL +G+R S+     +  +      I  +  K      V 
Sbjct: 151 FKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDFQRSRILIQNTKGYRQRYVP 210

Query: 237 LPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
           +     + L         +  +  F++ D   +   Q     ++   K G++ + H  R 
Sbjct: 211 IQKQMKEQLKKYLAIRGTLDHDYLFVSVDDTPLTKRQMQAQIESYGKKCGIHATCHKFRH 270

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A +S +AGA   EL A  G  +++  + Y
Sbjct: 271 TFARLSVEAGAGIFELQAVLGHSSMEMVKHY 301


>gi|329314680|gb|AEB89093.1| Phage integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 345

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 24/329 (7%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLIS 76
           GK   Y  K  G+R R               A +    K   + S        TL+    
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNYITLEEYFE 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSA 133
            + K+     +  N+   + +    I +   G  +  KI  +  +  +    ++H   + 
Sbjct: 62  NWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETI 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +   ++R     A+    +  NP   V      P +  +       E          + 
Sbjct: 122 RKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKR 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFM 242
           ++  LA   ++ +G R S +    ++H+     +I               I        M
Sbjct: 182 TRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIM 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
            +++   I  + +        +N    +   K+      +   ++H +R    +     G
Sbjct: 242 DVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKG 301

Query: 302 ATAHELMATYGWKTVD-QAETYTKGADRI 329
            + H +    G K +      Y+   +  
Sbjct: 302 VSIHYISKRLGHKNIAITTSMYSHLLEEK 330


>gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
 gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957]
          Length = 307

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 87/288 (30%), Gaps = 31/288 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGV 123
           + L  ++ +       + ++  ++ +   + +    R  G        + +    +R+ +
Sbjct: 11  RALWLDWLE--KERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAFL 68

Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             R        ++  + L ++R   ++  ++  +       +  PK      RP T +  
Sbjct: 69  AERAMRDGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIAGLRGPKVVPPAPRPLTPDQA 128

Query: 180 QQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231
                     ++      +    F  L   GLR S++         +         K   
Sbjct: 129 LDVTRDAGSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGKGDK 188

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVN-- 283
              V +     + +A     +     +          +++A       +      G+   
Sbjct: 189 ERVVPVLPAVEQAIAAYLRLRGGGEPDAPLFLGARGGRLDAGMAQRALRNYRRLVGLPES 248

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            + H +R   AT    AGA    +    G  ++   + YT   D  RL
Sbjct: 249 ATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYT-SVDSARL 295


>gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14]
 gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180]
          Length = 356

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 112/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREY 60
              LPP +     R+     Y     G+   L          A  +    L+G+  +   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLI 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L               G ET   +   + ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
 gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter
           turnerae T7901]
          Length = 317

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 44/312 (14%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESR-- 126
           +K     +     +   L+ +S  ++E      +   G      KI  K I   V++   
Sbjct: 3   VKEACGRFLDYCQYTKKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITKFVDACFA 62

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKS 184
              + ++  + L  ++ LFKW   +E +  +P    E   R      R  + +++ +   
Sbjct: 63  DGLSHATVKRRLACLKALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLLR 122

Query: 185 FW------SEGSQPRL------------------AFEFLLYSGLRCSDSCRAGVQHLQ-- 218
                    + S  R+                    E L  +G+R  +     +Q +   
Sbjct: 123 ICRSRLGLPKNSDYRVGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYLQ 182

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSI 271
                I+ +                L+      ++     +         +   +    I
Sbjct: 183 EKFIHIRGKGQRERRVFVTDKSIRNLIESYIQLRKITTPIDQNLLVNSRGRPATSQMVRI 242

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GAD 327
           W K  +  A + +  + H  R  +AT   + G     +    G +++   + Y     +D
Sbjct: 243 WLKNCSKAANLTRVATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSD 302

Query: 328 RIR-LGIKNSRR 338
            +R + + N R+
Sbjct: 303 VMRNVALANIRK 314


>gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
 gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136]
          Length = 420

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103
            Y SA+  +  + E      +         +    S    + + +  +++       +I 
Sbjct: 106 EYDSAVLYTDKENEIAAQNERSEQDFIKYFNR-IISKRHPNSSNSIIVNWTRVGELLKIY 164

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +     ++ I+ K +          P           ++A  + + ++   K A   EY
Sbjct: 165 SQGNPIPFKTISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFVDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+            T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIETPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQAL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +             +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAIVIQQKTKRPDYKPVIQQALQLCGERPSNDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              KA    +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKAWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|120609369|ref|YP_969047.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587833|gb|ABM31273.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 401

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 104/358 (29%), Gaps = 27/358 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           L P    + T  G+      Y    G  R+  L    E T   A   A       R   +
Sbjct: 27  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 86

Query: 63  SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
               K       T+  L  ++ +         +++  +++  D+ I+   G    + +  
Sbjct: 87  PSADKAMARSAPTVAELCKKFMEDHSKQRNKPSTQRGYQAVIDRCIVPMLGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + S ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 147 PDVASTMKKMVHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLIS 206

Query: 177 EDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           ++       + +           +   LA         R S+        +      +  
Sbjct: 207 DEEMGKLFRYLDFLETDGLGLDHAILPLAIRLQFEFAGRRSEIVTLQWDWVDLENRRVVW 266

Query: 227 QKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             + T    +        L                 N+  + M   ++   +     +AG
Sbjct: 267 PDSKTGGMSKPLSEEAHRLLSTASRQDGCPHVFPSPNHPGKPMTTGEYYSGWTRILKRAG 326

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           V +   HG+R  SAT  A++G      MA    KTV     Y    D+ +R   +   
Sbjct: 327 VTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVA 384


>gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 335

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 90/330 (27%), Gaps = 41/330 (12%)

Query: 15  RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   GK     +     G+RIR  +      +      +       +          TLK
Sbjct: 5   KLPSGKWLCQCFPYGRDGKRIRKQFSTRGEALSYERRLMA-----DKKGIDTTTSNITLK 59

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            L+  +    H  +L+     S  +    I  + GD     +         E R      
Sbjct: 60  DLVQRWYD-MHGKTLSSG--DSRYTKLLAICERLGDPFAIDVDKNMFAVYRERRLKGEWN 116

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++  +  + +R +F    R         L   R  ++ +    +   +  +
Sbjct: 117 PKGKAVLKEATVNREYSYLRAVFSELKRMGEWDKENPLDGIRQFKEGDQELAFLYPEEIK 176

Query: 182 FKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 + S  +   +     L +G R S++       +  N  +    K     TV + 
Sbjct: 177 RLLAACDESDNKDLGIIVRLCLATGARWSEAQDLKQSQILPNRVTFTKTKGNKNRTVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294
           +    LL        T    +             FK    +AG+   +    H +R   A
Sbjct: 237 EKMRSLLPKKRGALFTPAYES-------------FKYAIKRAGIELPSGQLTHVLRHSFA 283

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +     G     L    G  T+     Y  
Sbjct: 284 SHFMMNGGNILVLQQILGHSTITMTMRYAH 313


>gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 86/272 (31%), Gaps = 25/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L +         +L   S+ S +    +     G       T   ++   +    +  S 
Sbjct: 28  LRARMIADMSGRNLGPASQSSHQRACKRFAAWLGRSP-ETATPDDVKYFQQHLVESGVSI 86

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q +T ++ LF+  +R+  +        E  K         +K+++++     +   
Sbjct: 87  CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSL 141

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248
           + R+        G+R  +  R  V  + +    I+  +        V LP   + +L   
Sbjct: 142 KARVMLSLAYGCGMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREW 201

Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
              + T    +                 +A Q S  FK  A +AG+    + H +R   A
Sbjct: 202 WKERPTGQDKDLPTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T   + G     + A  G   +     Y   A
Sbjct: 262 THLLERGVDIRVIQALLGHSKLTTTARYASVA 293


>gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 295

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 90/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
            + + ++ I++E    + +        + +   I    IRS + S      +  +  + +
Sbjct: 14  KNYSKHTVIAYEKDVLEFLAFVKITFDESNLVDIHYAQIRSWIVSLVDNDVSNRTVNRKI 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFWSEGSQP 192
           +S++  +K+ ++   V  +P       K       P+++        +  ++      + 
Sbjct: 74  SSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFDRLKEADDFATLRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL----PDGFMKLLAM 247
            L  E L  +G+R ++     V  +     +IK   K      V +       + + +A+
Sbjct: 134 LLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERIVPMLSSVVVTYDRYIAV 193

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAG 301
                 +           A  +S        +        +  S H +R   AT   + G
Sbjct: 194 RSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDKLKTSPHILRHSFATHLLNQG 253

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
           A  + +    G  ++   + YT  + + 
Sbjct: 254 ADLNIVKELLGHASLASTQVYTHNSVQA 281


>gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 317

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128
           +  + +        AVN+  S+E   D +                       + +  +  
Sbjct: 9   VESFLEMMSAERGAAVNTLQSYERDLDDVHAFLTGRSVRLTEAASADLAAYLASLARKGF 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L +MR  +K+   +     +P   ++ PK+     +    E++ +  S    
Sbjct: 69  KASSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAEA 128

Query: 189 G-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236
                        +     E L  +G+R S+      + L       +   K      V 
Sbjct: 129 EAGDAAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 188

Query: 237 LPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           L    +  L                       F   + +  +    F+   K  A +AG+
Sbjct: 189 LSQSAISALKSYGRLLAAENAAAKNPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGL 248

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 249 TPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 298


>gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 393

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 103/369 (27%), Gaps = 42/369 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-------KREYINSPRKKPTTL 71
           G     F    G R R                     P       K         K  TL
Sbjct: 21  GHWYLDFYLPSGERQR-GTTKLRATAENLKVIKRQVIPDIYEGLGKEPIGIEEEAKTWTL 79

Query: 72  KWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           +    E+ +      +  ++   +   Y + I    G  +  +IT   I         K+
Sbjct: 80  QDFAEEFFE-LQKTQIRPHTLERNIMHYNNHIAPYFGKRELGRITPLEIERWQNQLLQKY 138

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
              +  +F + +  ++  A+  + V  NP   V  PK +            ++  +    
Sbjct: 139 KHLTVQKFRSILFSIYDKALHNDLVLKNPLEKVTAPKVQNNIKIEEINPFTEKELNQIIE 198

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227
                 +   + +  +G+R  +        +     +IK +                   
Sbjct: 199 HANGYMKNFIKLMAATGMRPGEIIALKWSDIDFEKRTIKVERTRLRAKKGEDIVDGLTKI 258

Query: 228 ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   +     D  M  L +T   +  F   ++    N     + F+    ++GV  
Sbjct: 259 KSSNRFVDMLNATHDSLMAQLELTSNSEYIFLNQSNMPFYNHDIIGVNFRKILKQSGVKA 318

Query: 285 SA-HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK---GADRIRL-GIKNSRR 338
              + +R   A+     GA    +    G K V    + YTK     D  RL  I    +
Sbjct: 319 RPLYNLRHTFASQMISKGADITWVSKMLGHKDVSITLKIYTKFIQEDDETRLKKIAQMDK 378

Query: 339 ISSVVDSDD 347
                D+ D
Sbjct: 379 FMVKFDNSD 387


>gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
 gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1]
          Length = 302

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 25/276 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR 126
           + ++          +  + +++++   +  R         G    R+   +     +  R
Sbjct: 8   LDQFLSYLQNERHYSAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAER 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           K   SS ++ ++S+   +++  R++ VAI+P   +   + + +  + + + +++Q     
Sbjct: 68  KLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQVFDSL 127

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241
                   +    FE    +G+R S+     +  L  ++ +I    K      V   D  
Sbjct: 128 KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKT 187

Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            K L                ++  F+NN    + +       +    +AG+      H +
Sbjct: 188 KKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT   + GA    +    G  ++   + YT  
Sbjct: 248 RHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283


>gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 93/295 (31%), Gaps = 35/295 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHI---RSGVESRK 127
           LI+ +          A N+  ++         +         + T   I    + +E R 
Sbjct: 10  LIAAFLDMVAAERGGAKNTLEAYARDLADYAGRLKAAKKSPIEATGDDIGAYIASLEKRG 69

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P+S+ + L+++R L ++ V + Y + +P   +E P+R     +  +  ++ +  +   
Sbjct: 70  LKPASSARKLSAIRQLHRFLVAESYRSDDPAAIIEGPRRGRGLPKTLSIAEVDRLLAVSK 129

Query: 188 EGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTI 232
           EG               +     E L  +GLR S+         +          K G  
Sbjct: 130 EGLDAAARSPGEQLRALRTACLIELLYATGLRVSELVSLPKSIARGKDPLIPIRGKGGRD 189

Query: 233 ITVELPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFK---AKAT 278
               +     + +A               G   F  +++   +    F+   K   A A 
Sbjct: 190 RLAPISTKAREAIAAYRALLDRLAPGAASGPWLFPADSESGHLTRQAFARDLKTAAAAAG 249

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +    S H +R   A+     GA    +    G   +   + YT   D     +
Sbjct: 250 LSAARVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAM 304


>gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola
           CNS-205]
 gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205]
          Length = 345

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 93/299 (31%), Gaps = 40/299 (13%)

Query: 65  RKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR 120
           R     L+  +  Y         LA N+  S+     + +      G  +   +    + 
Sbjct: 27  RAPVPALQHAVRGYLDHLAVERGLAANTLASYRRDLGRYLDTLASVGVTELASVDPGQVE 86

Query: 121 SGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +   +           SSA +  +++R L ++A+R+    ++P   +          R
Sbjct: 87  VHLARLRAGDDGHPPLAASSAARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPR 146

Query: 173 PWTKEDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
               +D+ +                   + R   EFL  +G R S++    V  L  +  
Sbjct: 147 ALPVDDVLKLLEAAGSVAATGDGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTG 206

Query: 223 SIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFS 270
           ++  +  G     V +    +  L    +                F+N     ++     
Sbjct: 207 AVLLRGKGGRNRLVPIGGYAVAALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAW 266

Query: 271 IWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +  A +AG+        S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 267 AILRGAARRAGLPGVGAEAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 325


>gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 255

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 91/261 (34%), Gaps = 21/261 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            +       +  +  ++       +R        ++T +       S   + S+  Q   
Sbjct: 6   IEEIKLRKYSYRTGKAYIYVVKNYLR-------SELTPREFLLKYYS-DKSKSTIRQAYF 57

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +++  ++  + + +    P    +      +     +++++++         + RL   F
Sbjct: 58  ALKFFYRNVLHERFNEEIPLAKKK-----EKLPVVLSRDEVKRMIYGTH-NIKHRLVLMF 111

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           L Y+G+R  +      + ++       IK  K      V L       L +     + + 
Sbjct: 112 LYYAGMRLQEVRNIRWEDVEFEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYV 171

Query: 257 INNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
             + + +K +     +  K  A +A +NK  + H +R   AT   + GA    +    G 
Sbjct: 172 FMSQRGKKYSPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGH 231

Query: 314 KTVDQAETYTKGADR--IRLG 332
           K +   + YT  A++   +L 
Sbjct: 232 KHLKTTQIYTHVANKDIKKLA 252


>gi|116492801|ref|YP_804536.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102951|gb|ABJ68094.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 357

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/332 (10%), Positives = 97/332 (29%), Gaps = 17/332 (5%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R +  +++    +   RR              +   +      +    S      T  
Sbjct: 5   EKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEA---DKLQNRSIIASSMTFA 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TP 130
                + ++     +  ++  ++ S    I           +T   ++S +++     + 
Sbjct: 62  DYFKMWMETYKKNDIRPSTYNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLSK 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187
            +    ++ ++   K A+  +Y+  +    ++    +          T+ +  Q   + S
Sbjct: 122 GTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSKKTNALSVTEFEKLQDYLYHS 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  +  LA    L +G+R  +      + +     +I   K+ +   V  P     +  +
Sbjct: 182 KLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRDI 241

Query: 248 TPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                       E                     +  +K  +   + HG+R   A+    
Sbjct: 242 KITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLLY 301

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            G + + + A  G       +  Y       +
Sbjct: 302 KGVSINYVSARLGHANTSITQKVYAHMLKEEK 333


>gi|228912160|ref|ZP_04075875.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL 200]
 gi|228847497|gb|EEM92436.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL 200]
          Length = 353

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/344 (10%), Positives = 98/344 (28%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K+  R     Y+  +     G  ++++              + +         +    
Sbjct: 3   IYKDEQRG--TYYFVTRIRQFDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKET 52

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               T       Y           +S  + ++   + ++ + G+    +I  KH+ +   
Sbjct: 53  TSSLTFSQAADSYFNWYSQRR-KQSSIETIQNVIYNHLVIEFGNLKVDQIIPKHVMNYQN 111

Query: 125 SRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  S+    +    +  +F ++++   +  NP       ++++     + + +  + 
Sbjct: 112 KIINKYSAKHLKKIHAVLSAIFNFSIKFHGLTNNPAKITGNFEKESNKRMNFWEFEEFKQ 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240
                +    +  F  L YSG R  +        +  +    +I   +    +T      
Sbjct: 172 FILAVDDPLYKTFFSVLYYSGARKGELMALTWSDINFDEKTININKTEYNRQVTEPKTKA 231

Query: 241 FMKLLAMTPIGKETFFINN------------------DKQKMNATQFSIWFKAKATKAGV 282
             +++ +     +                            ++++     F      A V
Sbjct: 232 SNRIIMLPSFIMDMLHDIKKTAALNAPVKNDYVVFGEFYNSISSSTLRQKFIKYVKIAQV 291

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 292 KKIVLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335


>gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 330

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 107/316 (33%), Gaps = 19/316 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G+     R    +  R+       +    +   +  +   + +   P  +   L 
Sbjct: 4   KQLKDGRYQVDVRPQGAQGKRIRKIFALKSKAQEFEKYILQNFHDKPWQAKPADQRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
            L+  +               ++    +++IR+ GD    ++T K +      +      
Sbjct: 63  ELLDVWW---MLNGRNQAYGDTYRVRLEKVIREMGDPRASQMTRKFMLEYRSDKLQAGLM 119

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           PSS  + L ++  +F   +  + +   NP   + + K +   +   + +++++       
Sbjct: 120 PSSINRDLCALSAMFTVLIDAEVFHNENPVHGIRKLKVRNTEMAFLSDDEIERLLER--L 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R      L +G R +++     +H+  N  +    K G   +V + +  + L+   
Sbjct: 178 EGDARRVAILCLSTGARWNEAAGLRGEHIVGNRVTFFNTKNGKSRSVPVANSVLSLIKTH 237

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G+          +++  QF    +         ++ H +R   AT     G     L 
Sbjct: 238 RTGQLY--------RVDYLQFREILREVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQ 289

Query: 309 ATYGWKTVDQAETYTK 324
              G  T+ Q  TY  
Sbjct: 290 RILGHATIQQTMTYAH 305


>gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 320

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|94310181|ref|YP_583391.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354033|gb|ABF08122.1| tyrosine-based site-specific recombinase CMGI-2 [Cupriavidus
           metallidurans CH34]
          Length = 399

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 103/371 (27%), Gaps = 35/371 (9%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREY---- 60
           P    + T  G+ ++   +R   G  R+  L    E T   A + A       R      
Sbjct: 29  PGFLCKITPTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAEVRRGGDPG 88

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+  L  ++ +         +++  ++   D+ II   G      +    
Sbjct: 89  GAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLLGRKKVHDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   +E   + P+ A +    +R +F  A    Y           P            ++
Sbjct: 149 IAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMYPPGKETRLIVDE 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      L      +    + 
Sbjct: 209 EMVRIFRHLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWLDFENRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284
                +        L  T   +E           +    +       +      AGV   
Sbjct: 269 VGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGEHYGGWCRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  S T  A++G      M   G KTV     Y    D+            R  I
Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388

Query: 334 KNSRRISSVVD 344
             +R+++    
Sbjct: 389 TGARQLAEAAA 399


>gi|228950790|ref|ZP_04112918.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228808877|gb|EEM55368.1| Phage integrase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 355

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/358 (10%), Positives = 107/358 (29%), Gaps = 30/358 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K++ R     YY +  +          +         A+       +  N       +
Sbjct: 3   IYKDKERG---TYYVKIVYRDYEGNKKQKKKRGFKKKNDAVAWEKEFHKKHN--ESSDMS 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
              L+  Y +      +  N+  + +   + +I+         +I   HIR    +    
Sbjct: 58  FASLVELYMEDI-VHRIRPNTFENKKYIINSRILPFFSKIAINEIKPMHIRKWQNTLISQ 116

Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S     T    +  +  +AV+   ++ NP   V    +K      +   +        
Sbjct: 117 GFSQTYLKTINNQLNAILNFAVKFYGLSANPSKVVGSIGKKQADSMNFWTLEEFNLFYEQ 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTG 230
            E  + ++ F  L ++G+R  +      + +                         +   
Sbjct: 177 LEKKESKVIFSILFWTGIRSGELLGLQWKDIDLLSNTISITKSLQKVNGETVINPPKTPK 236

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           +   + +P     L+            N+     +        +    KA + K   H +
Sbjct: 237 SKRIIHIPLALSALIVKYKNKLYKPKHNDFLFDCSKYYVLYELRRGIKKANIKKIRVHDL 296

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   A++  + G +   +    G + ++   + Y+         +  +++++++++  
Sbjct: 297 RHSHASLLIELGYSPLLISERLGHEKIETTLQVYSHLYPNKHDAV--AKKLNNLMEQK 352


>gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 235

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 305

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 73/281 (25%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHI----RSGV 123
           LK+ I ++ +   + +L   +   + +   +      + +      +T  HI        
Sbjct: 3   LKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCK 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRP 173
           +++ + P+S    L ++++ F +    E ++     + +                +  + 
Sbjct: 63  KNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQM 122

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                  + +       +      FLL +G R  +        +     +I         
Sbjct: 123 LDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKREY 182

Query: 234 TVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           +       +K   M                 F N   +K+        FK          
Sbjct: 183 SSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNFKN 242

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              S H  R   A            L      K +     Y
Sbjct: 243 VRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRY 283


>gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 293

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 83/269 (30%), Gaps = 21/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           ++ +  +      L+ N+   +       +         ++  +  R      +  +K +
Sbjct: 7   VLQQMTEDLRLRGLSPNTVDVYTRAARIFLEFC-KRPVDQLDVQDARRFLLFLICEKKRS 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++   +  ++R LF   + + +  +                +  ++ ++          
Sbjct: 66  AATVNVYNAAVRFLFAVTLNRTFNPLQIPRQK----MPKTLPQVLSRPEIASILEHCH-N 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + +  F  +  SGLR S++     QH+ +    +  Q           L    ++LL  
Sbjct: 121 LKHKALFALIYGSGLRVSEAAAIKTQHIDSRTMRVFVQGGKGAKDRYTVLSHTALQLLRE 180

Query: 248 TPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                                  + +   S  F     +A ++K  S H +R   AT   
Sbjct: 181 YWKAYRPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVSIHSLRHSFATHLL 240

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
           + G +  ++    G  ++     Y   A+
Sbjct: 241 EDGVSLLQIKELLGHASIRSTTVYLHLAN 269


>gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75]
 gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238]
 gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 317

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141
            +L   S+ S      +     G       T   ++   +    +  S     Q +T ++
Sbjct: 39  RNLGPASQSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQHLIESGVSICTRNQTMTGVK 97

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L +  +R+  +        E  K         +K+++++     +   + R+       
Sbjct: 98  FLLRVTLRRHDLVAEIFHLKEPVKV----PLVLSKKEIKRIL-AMAPSLKARVMLSLAYG 152

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINN 259
            G+R  +  R  V  + ++   I+  ++       V LP   + LL      + T    +
Sbjct: 153 CGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKD 212

Query: 260 DKQKM------------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                            +A Q S  FK  A +AG+    + H +R   AT   + G    
Sbjct: 213 VPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIR 272

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            + A  G   +     Y   A
Sbjct: 273 VIQALLGHSKLTTTARYASVA 293


>gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269]
 gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQEFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT   +   VE  +       A       + + ++A+  E +  +PC  V     +  
Sbjct: 167 DLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF F LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQTLIQCHYENENPNVRRAFIFCLYCGLRFCDVKDLTYKNIDYTNRLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L            ++     +        K    +AG+N
Sbjct: 287 EQNKTKGHSAHSGVVIPLNDGLLSLIGDAPDDLNSSIFNLPSYESCCKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 319

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 25/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L +         +L   S+ S      +     G       T   ++   +    +  S 
Sbjct: 28  LRARMIADMSGRNLGPASKSSHLRACKRFAAWLGRSP-ETATPDDVKYFQQYLVESGVSI 86

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q +T ++ LF+  +R+  +        E  K         +K+++++F    +   
Sbjct: 87  CTRNQTMTGVKFLFRVTLRRHDLVAEIFHLKEPVKI----PLVLSKKEIKRFL-AMAPSL 141

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMT 248
           + R+        GLR  +  R  V  + ++   I+  ++       V LP   + LL   
Sbjct: 142 KARVMLSLAYGCGLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDW 201

Query: 249 PIGKETFFIN------------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
              + T                   + ++A Q S  FK  A +AG+    + H +R   A
Sbjct: 202 WKERPTSQDRDVPVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T   ++G     + A  G   +     Y   A
Sbjct: 262 THLLESGVDIRVIQALLGHAKLTTTALYASVA 293


>gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58]
          Length = 290

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 22/280 (7%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128
            +I  Y         L+ N+  S+     + +        +   I    I S +   +  
Sbjct: 2   DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + ++S++    +         NP   +++PK K E I   T+E++++  +F 
Sbjct: 62  NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
              +    + +  FE L  +G++ S+     ++ +  +I  I           + L D  
Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181

Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
              L               +         Q+          K  +  A ++K+     +R
Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              A    + GA    +    G   +   + Y    D+ R
Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKR 281


>gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
 gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972]
          Length = 322

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 20/317 (6%)

Query: 16  TRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + GK        +  +G+R R            Y   +  +   +E++  P     TL 
Sbjct: 4   KKEGKKWLVDLRPQGRNGKRYR-RQFDTKFEATQYEKHVLATAHDKEWLEKP-ADRRTLS 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
            LI+ + K   +   +  +  ++      + ++ G     +IT K +     ++ +    
Sbjct: 62  ELIALWWK---YEGQSKKTAEAYLKEVKLVDKELGFPKAHQITHKLLADYRMAQLNKGRA 118

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +  +F   +  +       +S  + K        +   D          G
Sbjct: 119 MTTFNRKMNCLSNVFTALIAVKEFHNPHPVSGFKLKVPKTREMAFLSVDEMNHLLSVLSG 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              ++A    L +G R  ++       + +   +    K G   TV +       +    
Sbjct: 179 DSYKVAKLC-LATGARWGEAEELKGSTVSHGKVTFLDTKNGKDRTVPISQELQDEIVTGK 237

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
            G+       +        F +  K         ++AH +R   A+     G     L  
Sbjct: 238 SGRLFKDCYAE--------FYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGGNILTLQK 289

Query: 310 TYGWKTVDQAETYTKGA 326
             G  T+ Q  TY   A
Sbjct: 290 ILGHATIQQTMTYAHFA 306


>gi|217965870|ref|YP_002351548.1| Int [Listeria monocytogenes HCC23]
 gi|217335140|gb|ACK40934.1| Int [Listeria monocytogenes HCC23]
 gi|307569587|emb|CAR82766.1| integrase [Listeria monocytogenes L99]
          Length = 392

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/393 (14%), Positives = 115/393 (29%), Gaps = 58/393 (14%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M    R   F T E+ + G        G    G  IR+P    +         L     +
Sbjct: 1   MAKKKRY--FGTIEKLKTG-WRMRVTVGYNEKGTPIRVPRFTTTKNAAQREKELAAFIDE 57

Query: 58  REYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKIT 115
            E          T +  +  E+       +L+ ++    +E    +I    G     KIT
Sbjct: 58  LEKTGYTAPSNLTFREFVETEWLVKHVPANLSYDTGHDYYEQIKRRIYPVLGGVALSKIT 117

Query: 116 TKHIRSGVESRKHTP-------------------SSAIQFLTSMRVLFKWAVRQEYVAIN 156
           T  I + ++  + +                     S      ++  + + A +   ++IN
Sbjct: 118 TLQIVNLIDDLQKSGKRLEDSDNKRGVKDKPLSAHSIRNIYYALSSVLEVARKWRVISIN 177

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQ 215
           P   V+ P RK      +  E ++Q                ++   +G R ++      +
Sbjct: 178 PAKGVDLPSRKKRAHTIYQGESLEQMYEALKTEPLQFQVMIYIAVVTGCREAELVALERK 237

Query: 216 HLQNNIFSIKTQKTG---------------------TIITVELPDGFMKLLAMT------ 248
           H+      I  ++T                        I   L D  ++ L         
Sbjct: 238 HIDELSNKILFEQTIIDVVGEGVRVVSDTKNSVFGKVDIPQWLTDLIIQYLQDVEPGTGA 297

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
             G    F +   +          ++    +  + +   H +R  SAT+    G     +
Sbjct: 298 WTGHHFLFADETGKPKRPDSVYQRWRRFMERHHLPRIRFHDLRHTSATLLISQGEHIKVV 357

Query: 308 MATYGWKT-VDQAETYTKGADR-IRLGIKNSRR 338
                 K+ +  A+TY        +   ++ ++
Sbjct: 358 QERLRHKSMITTADTYAHVLQETHKKAAESFKK 390


>gi|218667058|ref|YP_002425468.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519271|gb|ACK79857.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 349

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 97/316 (30%), Gaps = 18/316 (5%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + GK  +  F   +G+RIR      +    A     +        +    +   T     
Sbjct: 4   KRGKTWWISFTTPNGQRIR-RSAGTTEKAQAEELHDSLKAQAWRQVQLGDRPAYTWDDAG 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--GVESRKHTPSSA 133
             +            S ++ E +   +         R +    I +   ++  + + S+A
Sbjct: 63  VRWLDEKAHK----ASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQIKKTQTSASTA 118

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             ++  +R + + AV   ++   P L        T+ +R  T    Q            R
Sbjct: 119 NHYMALIRSMLRAAVEWGWLDYPPLL--RPYPTPTQRVRWLT--PEQAVLLLNELPPHLR 174

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
               F L +GLR S+        L              K    ITV L D  + +L    
Sbjct: 175 DMAAFSLATGLRRSNVTGLEWSQLDLGRKIAWIHADQAKARKPITVPLDDVAISILRAQI 234

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
                +      +++     +  +K    +AG+     H +R   A+    AG   + L 
Sbjct: 235 GNHPIYVFTYCGKRVTQVN-TKAWKKALERAGIENFRWHDLRHTWASWHIQAGTPLNTLQ 293

Query: 309 ATYGWKTVDQAETYTK 324
              GW + +    Y  
Sbjct: 294 DLGGWHSSEMVRKYAH 309


>gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91]
 gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91]
          Length = 321

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 97/290 (33%), Gaps = 32/290 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRS 121
           L+ EY        SL+V ++  +      ++R           K  D    ++ +  IR 
Sbjct: 16  LLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRH 75

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +     +     S  + L++ R  +++ +R  +   NPCL V  PK   +     + ++
Sbjct: 76  FIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDE 135

Query: 179 -----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTI 232
                     S     ++    FE    SGLR ++  +     +     +++        
Sbjct: 136 AAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKT 195

Query: 233 ITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN- 283
             V + +  ++ L      +  +        F++   ++++    +     +A    ++ 
Sbjct: 196 RIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQNLDS 255

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H +R   A+    +      +    G  ++   + YT   D   L 
Sbjct: 256 RVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH-LDFQHLA 304


>gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
 gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19]
          Length = 303

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 87/299 (29%), Gaps = 30/299 (10%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISF----ESYFDQIIRKSGDFDYRKI---TTKHIR 120
            TL    + +          + ++  ++      Y D + +  G+     +   T+  +R
Sbjct: 1   MTLDDARTAWFGWLKGQRRCSAHTLAAYGHAFRGYTDYLRQHWGEASLDDVARVTSADLR 60

Query: 121 SGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   +      +  S  Q L++++    +              +  P+ K    RP  
Sbjct: 61  GWMAYLRGKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRGPRLKATLPRPLN 120

Query: 176 KED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           ++                  E S+    +  L   GLR S++    V           T 
Sbjct: 121 EDQAIGLLAETRMDADRDDWENSRDEAVYMLLYGLGLRISEALSLTVADTPLGDSLRITG 180

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKA 280
           K   +  + + +   + +      +       D+          +        +   ++ 
Sbjct: 181 KGNKMRVLPVLEAVREAIERYKSQQPFILAATDRLFRAKRGGELSPRHVQATMQHLRSRL 240

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           G+    + H +R   AT    +GA    +    G  ++   + YT+      L    + 
Sbjct: 241 GLSDRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAA 299


>gi|282882199|ref|ZP_06290838.1| phage integrase [Peptoniphilus lacrimalis 315-B]
 gi|281297964|gb|EFA90421.1| phage integrase [Peptoniphilus lacrimalis 315-B]
          Length = 360

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 97/365 (26%), Gaps = 44/365 (12%)

Query: 11  VTKERTRHG--KIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T +R ++   K    FR     G  ++ +            Y         +    N  
Sbjct: 1   MTSKRMKNNFNKWYCSFRYVNLDGETKQKKKEGFSTKKEADEY--------ERNFLNNIK 52

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
                  K L   Y +      +  ++  S E    ++I+    D     I +  ++   
Sbjct: 53  FNPEMNFKSLYKMYLEDMKPR-IKEHTLASKEYITENKILPYFKDMKISGIGSIEVQRWQ 111

Query: 124 E----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                      ++ + P+        +  +F +AV+   +  NP   V     K    + 
Sbjct: 112 NLLLQAKNPKTNKPYAPTYLKTINNQLTAIFNYAVKFHNLKNNPVHKVGTIGEKNAPEKE 171

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
               +         E     L F  L +SG R  +        +      I   K+    
Sbjct: 172 IWSIEEFNEFINLVEDKTLHLGFNILYWSGCRIGELLALTWNDIDFKNNIINIDKSYQRL 231

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                            + +    +K +            ++        +F        
Sbjct: 232 NCKDVITEPKTKKSIRKITVVSDVIKEIESYKKLFYKPGDDDRIFNCTKHKFEHAIINIC 291

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
            +  + +   H +R   A++  + G     L    G + V     TY+         +  
Sbjct: 292 KRNNLKRIRIHDLRHSHASLLLNEGINIVALSKRLGHEKVSTTLNTYSHMIPSEDKILNV 351

Query: 336 SRRIS 340
             ++S
Sbjct: 352 MEKLS 356


>gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 312

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 78/288 (27%), Gaps = 29/288 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
            TL+     +            +  ++E          G+    +IT   ++        
Sbjct: 2   ITLQNAKELFLMENQLKGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSS 61

Query: 125 -----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                       R  +  +   +   +RV   WA  +  +  +    ++ PK   + I  
Sbjct: 62  KKAEFKFTDKIDRTLSKKTIQTYTRQIRVFLNWAYAESLLKEDIGSKIKLPKAPKKVIEI 121

Query: 174 WTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQK 228
            + E+     +        G + +     +L SGLR  +     +  +           K
Sbjct: 122 LSDEEIELLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVHGK 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKA 280
                 + L     KLL     G          +         +      +       + 
Sbjct: 182 GEKERIIPLGVYTKKLLFKYLNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           G+     H +R   AT    AG  A  L    G  +++    Y+  A 
Sbjct: 242 GIQRLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289


>gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN]
 gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae
           Br4923]
 gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD
 gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae]
 gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae]
 gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923]
          Length = 316

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 38/277 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT----------PS 131
            S+A N+  S+     +  +   D    D  K+    +   + + +              
Sbjct: 21  RSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAV 80

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA + L ++R L ++AV +  V ++   +V  P       +  T +++          S+
Sbjct: 81  SAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESR 140

Query: 192 P--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242
                    R   E L  +G R S++    V  +     ++    K G    V +    +
Sbjct: 141 ADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGGKQRLVPVGRPAV 200

Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286
           + L                  +     F+N    +++        +  A  AG+    S 
Sbjct: 201 QALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSP 260

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H +R   AT   + GA    +    G  +V   + YT
Sbjct: 261 HMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297


>gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411]
 gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411]
          Length = 370

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 102/330 (30%), Gaps = 26/330 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSL 87
           HG+R+R      +      + A   S          R+     +  +  +Y   A     
Sbjct: 41  HGKRVRQTVSGTNLQGAKEIEAKIKSELVSGEYYDRRQAKIAFEQFVKEKYLPYAKEKK- 99

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVL 143
              S    ES     I           I+   I    +     +  P +    +  MR +
Sbjct: 100 ---SYNREESLLRLWIFPIIDKKTLNNISPLDIEKVKKEMIKNEKAPRTIEYAIAVMRQV 156

Query: 144 FKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLY 201
           F  A+    Y   NP   V++PK+    +R  TKE+ ++  S   + S          LY
Sbjct: 157 FNKAIEWGFYFGANPAAKVKKPKKDNRRMRFLTKEEAEKLLSELKKHSIQVYEMAYLSLY 216

Query: 202 SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +G+R  +      Q +       +IK  K        + D    LL      ++    + 
Sbjct: 217 TGMRFGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKYKREKPKNSSG 276

Query: 260 DKQKMNATQFSIW---FKAKATKAGV---------NKSAHGVRKFSATISADAGATAHEL 307
                N   +      FK    K G+             H +R   A+  A  G   + +
Sbjct: 277 FVFHRNGKPYKQIPGTFKTVVRKLGLNDGITDPRDKVVFHTLRHTFASWLAIQGTPIYTI 336

Query: 308 MATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
               G KT+   E Y+    D  R  ++  
Sbjct: 337 KELMGHKTLAMTERYSHLIPDAKREAVEKL 366


>gi|296107529|ref|YP_003619230.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649431|gb|ADG25278.1| hypothetical protein lpa_02800 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 410

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 95/332 (28%), Gaps = 34/332 (10%)

Query: 31  RRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           +RI L    + T   A   A      +             + K  TLK    +Y K+   
Sbjct: 59  KRITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKAR-- 116

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142
             L   +   ++S   Q+I    D     IT + I         T S   A   +  +R 
Sbjct: 117 KDLKPLTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRA 176

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGS------ 190
           +F +A  +  +     +    P       R W               + W +G       
Sbjct: 177 VFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHQGLTRLGEQ 236

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                    +  F  +L++GLR +++     + +                +       F+
Sbjct: 237 EDYSQAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             L +     +                         A  +GV+ + H +R+  AT +   
Sbjct: 297 YELFLRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESL 356

Query: 301 GATAHELMATYGWK-TVDQAETYT-KGADRIR 330
              A+ L      K   D    Y  +  +R+R
Sbjct: 357 DLPAYALKRLLNHKMNTDVTAGYIVRDVERLR 388


>gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 297

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 24/276 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128
           +I E+     +    ++ +  S+            + D    +  IT   +RS +ES   
Sbjct: 2   IIDEFLNYLKYEKRRSLLTVESYSEDLKAFQSYFTNLDSLLSWETITANDVRSWIESMMD 61

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++A    + L+++R  +++A  +     +P  +V  PK++    +   + +M++    
Sbjct: 62  KGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLLDD 121

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
             +G      + R+       +G+R S+        +         T K      V   +
Sbjct: 122 VLQGDDFESVRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQRIVPFGE 181

Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGV 289
                L    + +       D          +M +T      +   ++      +S H +
Sbjct: 182 KLSLELRAYILIRGERENIVDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLKKRSPHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R   AT+  +  A    +    G +++   E YT  
Sbjct: 242 RHTFATVMLNNDADIESVRHLLGHESLKATEVYTHT 277


>gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 26/281 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESR 126
            T + ++  +       +L+  +   ++    + I    D D     + T   R  V   
Sbjct: 1   MTNEQMVKMFLIYQESRNLSPRTLEWYKYITAKFINYCNDNDIQIDSLKTPEARQWVNWL 60

Query: 127 K------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +      +  +S    + +++ +F + +  EY+  NP   V + K     I  +  ++++
Sbjct: 61  QKGSETQYKGNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIK 120

Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
           +  +  ++ +    +  L    +   GLR S+     +  +  +        K      V
Sbjct: 121 KMLAQLNKNTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMV 180

Query: 236 ELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                  + L      +                N    ++        +     AG+   
Sbjct: 181 PFGRSVKRELVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGK 240

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             S H  R   A     AG     L    G  +++    Y 
Sbjct: 241 RLSPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYI 281


>gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 336

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 21/319 (6%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR    +  +   AY   +  +   +E+ + P  +   L
Sbjct: 10  KKLDDGRYEVDVRPRGTSGKRIR-RKFNRKSEAQAYEKYVLTNFHDKEWQDKPADRRL-L 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             LI+ +     +     N   S++   ++I R+ G+    ++T   +     SR H   
Sbjct: 68  SDLIALWW---SYHGKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGV 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +  +   +M  +F+  +  E +   NP   V + + +   +   ++E+++       
Sbjct: 125 SAGTVNRDFCTMSSMFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMA-- 182

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R  ++     +H+ +N  +    KTG   TV +       +  
Sbjct: 183 LTGDDRRVVVLCLNTGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILT 242

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              GK            N  +     +         ++ H +R   AT     G     L
Sbjct: 243 RKSGKLFDT--------NYERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITL 294

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  T++Q  TY   A
Sbjct: 295 QRILGHTTIEQTMTYAHFA 313


>gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16]
 gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16]
          Length = 359

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 94/299 (31%), Gaps = 41/299 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           L++ Y         LA ++  S+            R +       + T HIR+       
Sbjct: 28  LVTRYLDWLRGSRKLAEHTLTSYSRDLRVLQGHAARYAPGVALLALQTHHIRNFAARLHG 87

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
                +S  + L++ R  F+WA R  + V +NP   V  P+      +  + E       
Sbjct: 88  AGLVGTSIARTLSAWRGFFQWAARHGHGVTVNPVDGVRAPRSGHALPKALSVEHAVALVA 147

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
                 ++  + +   E    SGLR S+  +  +++   + +                  
Sbjct: 148 HPAGTDAQALRDQAVHELFYSSGLRLSELVQLDLRYADADGYRSSGWLDLAGAEVTVTGK 207

Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                +V +    ++ L                P      F+    ++++     +  K 
Sbjct: 208 GSRQRSVPVGSKAIEALRAWLAVRDTLLRPGALPEDAHALFLGPRGRRLSMRTVQLRLKQ 267

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +A +AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 268 QALRAGVPADVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYT-ALDFQHLA 325


>gi|301168983|emb|CBW28580.1| DLP12 prophage; predicted integrase [Haemophilus influenzae 10810]
          Length = 347

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 96/317 (30%), Gaps = 16/317 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R     Y F   +G RIR      S    A   A               +   + +  
Sbjct: 9   KKRGEIWHYSFTSPNGERIR-RSARTSDKNQALQLASKEYNECWRIFKLGERPEYSWQEA 67

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPS 131
           + ++ +         N           + +  GD    +I     K I+S          
Sbjct: 68  VLQWLEEKPKRKQDRNMIYG----LVWLDKYLGDKKLSEIDRNLIKFIQSEKAREGVKAR 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +RV+ + AV  E++   P +  +        IR  ++ +  +      E  +
Sbjct: 124 TINAVLQQIRVVLRAAVEWEWIDKCPAI--KFLPEPKRRIRWLSEYEEIRLMQELPEHLK 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           P    +F + +GLR S+  +     +      +  + +              K + +   
Sbjct: 182 P--IVQFAILTGLRMSNITQLKWSQIDLPKKMAWISSEQSKTGNGIGIPLNDKAIEVIVA 239

Query: 251 GKETFFINNDKQKMNATQF--SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                  N      NA +   +  F+    +AG+ +   H +R   AT    +G   + L
Sbjct: 240 QFGKHKENVFTYNGNAVKIANTRAFRESLKRAGIKDFRFHDLRHTWATRHIMSGTPLYVL 299

Query: 308 MATYGWKTVDQAETYTK 324
               GW   D    Y  
Sbjct: 300 QELGGWTKTDTVRKYAH 316


>gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009]
          Length = 312

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPITESLFEKIKKRGGKLVFPTLD---- 235

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 236 ---YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|167760713|ref|ZP_02432840.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
 gi|167661600|gb|EDS05730.1| hypothetical protein CLOSCI_03098 [Clostridium scindens ATCC 35704]
          Length = 354

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 110/360 (30%), Gaps = 40/360 (11%)

Query: 13  KERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++  + GK +  +R       RR        +               +   I        
Sbjct: 4   EKDKKTGKWLIQYRYTDWQGKRRKSTKRGFATKLEAEEWL-------RNFLITQNADFDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
             +     Y        L  ++  + +   + +I+   G      IT   IR        
Sbjct: 57  KFEEFWKMYCADMETR-LREHTMRTKKYIVELKILPYFGKKRVNDITAADIRQWQNELIK 115

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKS 184
             ++P+        +  +F +AVR   +  NPC+      +   E +  WT E+ ++F  
Sbjct: 116 KGYSPTYLKTINNQLSAIFNYAVRYYDLKSNPCVKAGSMGKSKAEEMDFWTGEEFRKFID 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
                    +AF  L ++G+R  +      + +     +I   K+               
Sbjct: 176 SIMNKRLSYMAFMTLYWTGMRLGELLALTPKDVDLEKRTISITKSYQRLGRKDVITPPKT 235

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                 + +P+     +            ++    +         +    ++GV +   H
Sbjct: 236 PKSKRVITIPEFLAADIKDYMDSLYDLQEDDRLFPITKYYLEHEMQRGIKESGVKRIRLH 295

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R   A++  + G +  E+    G + V+    TY        L      +++  +DS+
Sbjct: 296 DLRHSHASLLIELGFSPLEIANRLGHEKVETTLNTYAH------LYPNKQAKLADRLDSE 349


>gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 307

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 33/301 (10%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKH 118
            T   L++ YR        L+ ++  ++      ++   G         D     +    
Sbjct: 3   RTRADLLASYRSYLALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLAD 62

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  + +     H+ ++  +   S+R    WA     +A +    +  P+         T
Sbjct: 63  LRDWLAAMAASGHSRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLT 122

Query: 176 KEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +   Q                 +     E L  +G+R S+     V  L ++  +++  
Sbjct: 123 TQQASQLLKTAADLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVL 182

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKA 277
            K     TV       + L      +      +           ++++            
Sbjct: 183 GKGRKERTVPYGLPAARALEEWLRRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLC 242

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
           + A V     HG+R  +AT     GA    +    G  ++   + YT   A+R+R   + 
Sbjct: 243 SAAQVPDLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQ 302

Query: 336 S 336
           +
Sbjct: 303 A 303


>gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
 gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130]
          Length = 342

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 38/303 (12%)

Query: 76  SEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESR 126
             + +       +A  +  +++    Q      D         D+  +    +R+ +  R
Sbjct: 40  ERWLRWMETERRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYLAQR 99

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----- 178
           ++T   P +  + L  +    +   RQ   +     ++  P++     +P   +      
Sbjct: 100 RNTGAGPRTLARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQALRLT 159

Query: 179 --MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +Q        ++       L   GLR  ++       L     +  T  T T+    
Sbjct: 160 ETSEQLHEEPWIAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDTLRITG 219

Query: 237 LPDGFM----------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                 +L           F       +    F           
Sbjct: 220 KGGKTRLVPLLPVVGEAIASYLRLCPHVIEADAPIFRGMRGGPVQPAVFQRAMARMRGAL 279

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+    + H +R   AT     G     +    G  ++   + YT   D   L    +  
Sbjct: 280 GLPSTATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYT-AVDTESLMASWAAA 338

Query: 339 ISS 341
              
Sbjct: 339 HPR 341


>gi|229103030|ref|ZP_04233719.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
 gi|228680445|gb|EEL34633.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-28]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 106/365 (29%), Gaps = 43/365 (11%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A    +     +            TL
Sbjct: 7   KRGNKYCIVIDIGADPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNDGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + E+ K      +  ++   +E      +I   G   + K+    I+    +     
Sbjct: 66  KDYLLEWLK-VKEMEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYRNLTGKL 124

Query: 131 SSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           S++   L    +      A+ Q  +  NP     +PK++   I+ WT+E+++ F      
Sbjct: 125 SNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTFLLHSQ- 183

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------GTIIT 234
            S+    F   + +G+R  +      Q +  +  ++   +T               +  T
Sbjct: 184 NSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRT 243

Query: 235 VELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKAKATKA 280
           + +P   +  L    +  +                        +    F   +     KA
Sbjct: 244 LPIPIETINALKEHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKA 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            V K   H +R   AT+    G     +    G   +      Y+       +     + 
Sbjct: 304 NVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSHVLPN--MQEDAVKN 361

Query: 339 ISSVV 343
            +  +
Sbjct: 362 FAKNI 366


>gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53]
 gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 326

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 46/302 (15%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRK 127
           LI  +            N+  ++ S    +    G          T  +R+ +   ++R 
Sbjct: 11  LIELFLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAKTSLSGADTHALRAYLIDLDARG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
           +  +S  + L+++R LF++ + +   A +P   +  PKR     +  +  D+ +      
Sbjct: 71  YKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMSIADVDRLLEHAK 130

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
                          ++     E L  +GLR S+     V   + +   I  +       
Sbjct: 131 RLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRGKGNKER 190

Query: 234 TVELPDGFMKLLAMTPI-----------------------GKETFFINNDKQKMNATQFS 270
            V L +   + +A                            K  F  + +   +    F+
Sbjct: 191 LVPLNESSKRAMAAYLEAIAAQDRERDKEKGKAKPGKAAAQKWLFPSSGESGHLTRQHFA 250

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K  A  AG++    S H +R   A+     GA    +    G   +   + YT   +
Sbjct: 251 RELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310

Query: 328 RI 329
             
Sbjct: 311 ER 312


>gi|256617839|ref|ZP_05474685.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256854186|ref|ZP_05559550.1| predicted protein [Enterococcus faecalis T8]
 gi|256960097|ref|ZP_05564268.1| integrase [Enterococcus faecalis Merz96]
 gi|256597366|gb|EEU16542.1| integrase [Enterococcus faecalis ATCC 4200]
 gi|256709746|gb|EEU24790.1| predicted protein [Enterococcus faecalis T8]
 gi|256950593|gb|EEU67225.1| integrase [Enterococcus faecalis Merz96]
          Length = 382

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 2   IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 59  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+        Q  V        +      + I+ +T
Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E+    G   +    
Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358

Query: 320 ETYTKGAD 327
           +TYT   +
Sbjct: 359 DTYTHLTN 366


>gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
 gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970]
          Length = 267

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 17/252 (6%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153
               ++  + G   ++ +    +RS V   K      SS    L+++R    W V Q  +
Sbjct: 2   QALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVM 61

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSC 210
             NP   V  P+      +    +++ +            + R   E +  +GLR S+  
Sbjct: 62  QANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELV 121

Query: 211 RAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQ 262
               +H+   +       K      V +    +  L              +  F+ N  +
Sbjct: 122 GMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLYHWLALRELFEPQDDAIFLANTGK 181

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +++A      F     K GV  +   H +R   AT   ++      +    G   +   +
Sbjct: 182 RISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQ 241

Query: 321 TYTKGADRIRLG 332
            YT   D   L 
Sbjct: 242 IYTH-LDFQHLA 252


>gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
 gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 87/289 (30%), Gaps = 30/289 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130
            Y +       + ++  ++ S       +    G  D   I    +R         + + 
Sbjct: 19  RYLEGERAR--SPHTVRAYLSDVHSLLTVAAADGATDLDGIELATLRRWLGAQSEARMSR 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           S+  +   + R    WAVR+E +  +P L ++ PKR+        ++ + +         
Sbjct: 77  STLARRAATARSFTSWAVREELLGSDPALRLKAPKRERSLPGVLHQQQVLRVVDHLKAAA 136

Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                   + R   E L  +G+R  +     V  L  +  +++         TV      
Sbjct: 137 EDGGPLALRDRAMVELLYATGVRVGELAGMDVDDLDPDRRTLRVVGKGNKERTVPYGLPA 196

Query: 242 MKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAHGV 289
              +             +              ++  Q     K      G       H +
Sbjct: 197 AVAVDDWLRRGRPVLAVDGSGPALFLGARGRRVDQRQVRTVVKDVLDALGDTAATGPHAL 256

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           R  +AT   D GA    +    G  ++   + YT    +R+R   + + 
Sbjct: 257 RHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAH 305


>gi|257415531|ref|ZP_05592525.1| integrase [Enterococcus faecalis AR01/DG]
 gi|257157359|gb|EEU87319.1| integrase [Enterococcus faecalis ARO1/DG]
          Length = 382

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 2   IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 59  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+        Q  V        +      + I+ +T
Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 179 KDQLQIFLKSIEQSESAYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E+    G   +    
Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358

Query: 320 ETYTKGAD 327
           +TYT   +
Sbjct: 359 DTYTHLTN 366


>gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43]
          Length = 389

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/391 (12%), Positives = 116/391 (29%), Gaps = 57/391 (14%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P  + ++R  +G   +++R  H    +    +  T           +       ++ + 
Sbjct: 1   MPKSIYRKRVINGTEYFFYRLRHDNLRKPKDLYARTEKELKAKIKKLNYELD---HNIQS 57

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE 124
              +     SE+     +  +  +++I +E+ +   I+  +  D   +++T+K I+    
Sbjct: 58  NKNSFGVFFSEWLFDIKFMEIKPSTKIKYETVYRNHIKNSEISDIKIKELTSKDIQIYYN 117

Query: 125 SRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +      S          +    K+A   +++  +   S+  PK   +         +  
Sbjct: 118 NLIKKGKSTTLVKTIHKLIAPCIKYAYNNDFIIKDFTGSLIIPKETEKDKLNKESSVIPF 177

Query: 182 FKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233
                 E      G++    F   L SGLR  +        +      I   K   ++  
Sbjct: 178 TLEEQKEFIKAIKGNKFEALFITALNSGLREGELLALTWNDINLKEKYINVNKNLGVVTE 237

Query: 234 -------------------------------------TVELPDGFMKLLAMTPIGKETFF 256
                                                  +        LA         F
Sbjct: 238 VSKDGRGVSKLEVQTPKTRKGKRQVSIPNFLITVLKEYKKQQSKNRLKLANKYTNNNLIF 297

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315
            +     +N  + +  +K    ++ +     H +R   AT   + G  A  +    G   
Sbjct: 298 CDEYGNYLNRDKVTYQYKKLLKESKIKTRKFHDLRHTYATRLFELGEQARTVQELLGHSD 357

Query: 316 VDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           V     TYT   D ++   K   ++ ++ ++
Sbjct: 358 VSVTLNTYTHVLDDMK--EKAVSKLDNLFNA 386


>gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5]
          Length = 349

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 90/296 (30%), Gaps = 29/296 (9%)

Query: 59  EYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +    +    L  L++    +       + + ++  ++ +  +Q+             
Sbjct: 27  AELAITIEADAALSELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGKRLTWTR 86

Query: 116 ------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                  +HI   ++  K + +S  Q L+++R  + W + ++   INP    +  +    
Sbjct: 87  CDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRP 146

Query: 170 GIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  + + Q        +        + +  FE L  SGLR  +     +  +    
Sbjct: 147 LPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLAD 206

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSI 271
             ++          V L       +      +  +    D+          +++      
Sbjct: 207 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQ 266

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             K  AT+AG+ ++   H +R   A+           +    G   +   + YT  
Sbjct: 267 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHV 322


>gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 109/350 (31%), Gaps = 54/350 (15%)

Query: 18  HGKIIYYFRK-GHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           HG + + FR    G    +L    E     A+ +         +  N    +      L 
Sbjct: 6   HGNV-WRFRIMKDGIPYTKLFEGTEKKAKEAHEA----FKVDVKRGNVGTNENMKFNELC 60

Query: 76  ----SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRK 127
                +Y K     +   ++   +++ ++  ++   GD     I   HI+     +    
Sbjct: 61  QLVTDQYVKV----NCKYSTVEFYKNTYNTHLLPFFGDKKLSSIKPLHIQQFVTHLSELD 116

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW 186
             PS+    L+ ++  F+ AV+ E +  NPC+ V+RP+++    R      D  +     
Sbjct: 117 LAPSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRGQLMTVDEMKKLLEI 176

Query: 187 SEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230
            E          + AF   L  GLR S+     +  +      I+  K            
Sbjct: 177 YENLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEKGKVV 236

Query: 231 ----------TIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWF 273
                     +I  +  PD  +  +       +        F+     + +     S +F
Sbjct: 237 EGYITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCLSTFF 296

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   +     H +R   AT+ A  G     L    G   ++    Y
Sbjct: 297 TNILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIY 346


>gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 300

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 88/277 (31%), Gaps = 27/277 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSG-DFDYRKITTKHIRSG----VESR 126
           +Y +      L+  +   +                       ++ TKH+R       + R
Sbjct: 14  DYLEIE--RGLSDRTVDGYRMDIGVFARLMVREFFPQGMVLNQLETKHVRRFLVYLKKER 71

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +  + L S+R  FK+     YV  NP   +   K         T ++  +  +  
Sbjct: 72  DNNAGTRNRKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDESDRLINAA 131

Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
            +      +       LL +G R  +     + +L      ++          + L D  
Sbjct: 132 KKQAKPPYRDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGKGNKERMIPLTDKT 191

Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
              LA            ++  F+N+   ++      + F     +AG+N+   + H +R 
Sbjct: 192 CAALAEYLEARVPKDEKEKAVFLNHLGMRITYPGVQLVFNRLCEEAGLNRGRLTVHKLRH 251

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              T+  +AG     +    G +++   E Y     R
Sbjct: 252 TCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288


>gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
 gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243]
          Length = 284

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 78/286 (27%), Gaps = 23/286 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            T + ++  Y  +    S     R  +     ++    G      +    +R  V  R  
Sbjct: 1   MTFEEIVGIYLSAKDHRS---KQRDMY--SLKRLQPYFGGRAISALKRVDVRKYVAVRLA 55

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FK 183
                S+  + L  +     +   +   +  P  +        E    W           
Sbjct: 56  DGVQESTVKRELKFLSAAINFVRLECDCSDLPNPAQSLGLNGGEHRVRWISRAEASALIL 115

Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
           S  +   +P LA    L   +G R ++        +      ++      K G    V L
Sbjct: 116 SASAYAKRPHLANFVRLALSTGCRKNELLALDWCRVDFEHSFLRLNAEHTKNGKRRVVPL 175

Query: 238 PDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
               +  L       E       ++               F A   + G+     H +R 
Sbjct: 176 NSAALSALRDQRDWVERKCSGSEWVFPAWSGKRIQTLQKGFNAACARVGIENFRIHDLRH 235

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
             A+     G + + +    G  ++   E Y   + D+ R  ++  
Sbjct: 236 TFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKL 281


>gi|107024205|ref|YP_622532.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688470|ref|YP_834093.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105894394|gb|ABF77559.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116646559|gb|ABK07200.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 347

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 107/346 (30%), Gaps = 25/346 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  Y++    +  T+   
Sbjct: 6   KTPSGTWKAVIRKIGWP-TSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +          ++ S       +    G +    ++ + +    + R     S  
Sbjct: 65  LKRYMEEVSVTK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A+++  +    NP  +V +P       R  ++++ Q+  +     
Sbjct: 124 TVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEHQRLFAAADAH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245
           S P L +   L   +G+R S+        +  +   +  +  K G+   V L     ++L
Sbjct: 184 SNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRVVPLTREAAEVL 243

Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296
                            F       K     F   +       G V+   H +R  + + 
Sbjct: 244 RAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLGMVDLHFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +AG +  E+ +  G K++   + YT             +++ ++
Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLKRYTHL-----RAEDLVQKLDTL 344


>gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 112/366 (30%), Gaps = 44/366 (12%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY--MSALTGSTPKREYINSPRKKP 68
           V ++    G    +      R+ +L    ++    A    +AL       E    P    
Sbjct: 5   VREKVKGSGAWWVFVNHDGKRKSKLVGDKKAAKEAARKIEAALASGKFIVEDEAMP---- 60

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T   L  E+       +   ++   ++    + I+R+ G     +IT   I+  +  + 
Sbjct: 61  -TFGELAKEWIALTVPATCKASTLKDYQRLLANHILRRFGSKPVDQITRLMIKDFLLQKG 119

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    S+    L  +  +   AV   Y+A NP   + R   + +  +   +    Q   
Sbjct: 120 KSGLAGSTVRHMLNVISGVMTRAVEAGYIAHNPGQRMGRGVIRIKDRKADIEPLTTQELD 179

Query: 185 FWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNN-----------IFSIKTQK 228
              E  + R          L  +G+R  ++       +                 ++T K
Sbjct: 180 HLLEVVRDRFPNAFPMILTLARTGMRLGEARGLEWGDIDFRGGFIMIRRGVSRERMETPK 239

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFK 274
           +G    V++      +L      ++   +     K+    F              +  + 
Sbjct: 240 SGKGRRVDMSRQLAAVLLDLRARRKREALAKGWGKVPDRVFLSAEGKPVHDYHFRNRIWY 299

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRL 331
                AG+ +   H +R   A++    G +   +    G  ++    +TY   A D  R 
Sbjct: 300 KALEYAGLRRVRIHDLRHTFASLLIQNGESLAYVRDQLGHCSISLTVDTYGHLAPDGNRN 359

Query: 332 GIKNSR 337
            +    
Sbjct: 360 AVDKLD 365


>gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
 gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 336

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 94/312 (30%), Gaps = 25/312 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
               +      +  +  + E   +           +  +  +      +  +   +    
Sbjct: 31  SIAQMKKLQEVILQTFAENEAEKAEIAN----DKFLEMFLDAKTIEGCSERTIKYYRETV 86

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             ++ ++ +   RKITT+ IR  +   +     +  +      ++   F W   ++Y+  
Sbjct: 87  QHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILK 145

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +P   + + K KT      + E +++ +   +E  +     + L  +G+R  +     + 
Sbjct: 146 SPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTGIRVGELVNLNID 204

Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQ 268
            +       I   K      V         L      +           +    ++  + 
Sbjct: 205 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYINTRTDKNKALFVTLDAPHDRLKISG 264

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---- 323
             I  +    K  + +   H  R+  AT + D G    ++    G   +D    Y     
Sbjct: 265 VEIRLRKLGRKLSLERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQ 324

Query: 324 ---KGADRIRLG 332
              K A +  L 
Sbjct: 325 NNVKTAHQKYLA 336


>gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 442

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 105/354 (29%), Gaps = 46/354 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN------------SPRKKPT 69
            Y  + G    + +                 G  P  E                  K   
Sbjct: 61  YYKIKIGDFPDLTVAEAR-KKIQQLKRDIAKGINPMDERRKINKERREKREKRLKLKNEL 119

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR 126
           T + +         +   + +   S++   +++        +    +IT + I+   +  
Sbjct: 120 TFRQV------HEKYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEI 173

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +A   L ++  +F  A+    +  NP   ++R K+++       +E  +  K 
Sbjct: 174 TARKHYVTANNILMNLSPIFNKAIEWGLIDKNPVHGIKRHKQESRSRYVTNEEMERLMKV 233

Query: 185 FWSEGSQPR------------LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228
              + +               L     L++  R  +        +    +         K
Sbjct: 234 LVEKENSQLTEEQKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSK 293

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN- 283
            G  + + L D  + +L    +  ++ +I     ++ + ++++     +     KAG+  
Sbjct: 294 NGKQLYIGLADKLIAVLQNRKLCSKSEWILPSVKDNSKHISSSTIHRAWAKIRKKAGIPN 353

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
            + H +R+  AT   + G T   +    G    +  + Y        ++     
Sbjct: 354 VTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIYIIHSLAMAKIATNKV 407


>gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 295

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 81/267 (30%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L     +      +   ++ S            G       T + +R+          TP
Sbjct: 9   LRQRMIEDMRIRGMGDKAQKSHIRAIKDFAAFLGRSP-DTATPEDLRAYQLHMTDTGITP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEG 189
           S+    + ++R  F     +E +        E      +    ++ E++          G
Sbjct: 68  STFNTRIVALRFFFGMTCGREEMKRYMQFRTEP----RKLPVVFSVEEVSDILMAAPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + R A      +GLR ++ C   +  + ++     ++  K      V L  G ++LL  
Sbjct: 124 LKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRA 183

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                               ++  Q +  F +    AGV K  + H +R   AT   +A 
Sbjct: 184 WWRETRPEGWLFPGKPKINPISPRQLNRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 243

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G   +     YT  A +
Sbjct: 244 TDVRVIQVLLGHAKLTTTARYTHVATK 270


>gi|329910273|ref|ZP_08275268.1| site-specific recombinase, phage integrase family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546222|gb|EGF31261.1| site-specific recombinase, phage integrase family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 108/338 (31%), Gaps = 31/338 (9%)

Query: 11  VTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIP---AYMSALTGSTPKREYINSPRK 66
           + K  +  GK   Y  +     R+R   P  +TF     A   A       +   +    
Sbjct: 4   IEKRVSDDGKETAYRVKI----RLRGQAPETATFERLTDAKEWAKKTEADMKAGRHFGIS 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  T++ L+  Y KSA     +  S  +     D    + G      +T   I    +  
Sbjct: 60  KRHTVEELLDRYEKSALPALKSAESVKAK---LDFWRERHGKNLLSDMTPDVIAKARDKL 116

Query: 127 KHTPSS----------AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175
             TP              + L ++     +AV++  ++  NP   V +       +R  +
Sbjct: 117 ASTPKQRGGGIRSAADVNRTLAALSSACGFAVKELGWLERNPMERVRKGAEAKGRVRFLS 176

Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231
            +++  F     +   S   LA    L +G R S+      + +     +      K G 
Sbjct: 177 SDELPLFLKACRDSANSHLYLAVVLALTTGGRKSEVMSLRWRQIDMKRRTAMLGDTKNGD 236

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV-NKSA 286
              + L    + LL  +   +          K             F      AG+ +   
Sbjct: 237 ARALPLSGEALALLQASATVRALDDDRLFPPKPRGKSEFMDLRAPFDGALKVAGITDFHW 296

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R  +A+  A AG +  E+    G +T+     Y+ 
Sbjct: 297 HDLRHTAASYLAMAGTSPLEIAKVLGHRTMAMVARYSH 334


>gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003]
 gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 101/365 (27%), Gaps = 40/365 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKP 68
                 R G ++ Y   G  +R  +        T        L     + E     RK  
Sbjct: 33  CVYTTGRKGFVLIYRIAGQQKRFTIGVWPTWSVTAARDEAKRLIREIDRGEDPLDTRKAA 92

Query: 69  T---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI----- 119
               T+K L   + +      LA  +    +S  +++ + +  +     IT   +     
Sbjct: 93  RGAPTVKELAERFIEEH-LPKLAKTNASDQKSMLEKLVLPEWKNRKVADITPTDVDRLLT 151

Query: 120 ------------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                             R  +   K TP  A +    +R +F  A+  +    NP    
Sbjct: 152 KIAAGRARPSKKKPTQKRRKKLAPPKPTPVRANRAGEMLRKMFNLAMLWKMRTDNPAFGF 211

Query: 162 ER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---- 216
            R P+   +    + + +         E  +        + +G R  +   A        
Sbjct: 212 RRRPEVARDRFLSFEEIERLANALAVDEDQRAASIIRLCMLTGARLGEVRTATFDQFNLD 271

Query: 217 --LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIW 272
             +     +   Q+    + +      +  L    + K   F+                W
Sbjct: 272 LAIWTKQAAYTKQRRIHRVPISHEAVALIRLRREIVPKGCPFLFPGDVPDQPVGDPKRFW 331

Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRL 331
            K +      +   H +R   A++    GA+   +    G   +   + Y    D  +R 
Sbjct: 332 PKMQKVALIPDVRIHDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHLIDAPLRA 391

Query: 332 GIKNS 336
           G+   
Sbjct: 392 GVNAV 396


>gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
 gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium
           rectale ATCC 33656]
          Length = 336

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 94/312 (30%), Gaps = 25/312 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
               +      +  +  + E   +           +  +  +      +  +   +    
Sbjct: 31  SIAQMKKLQEVILQTFAENEAEKAEIAN----DKFLEMFLDAKTIEGCSERTIKYYRETV 86

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             ++ ++ +   RKITT+ IR  +   +     +  +      ++   F W   ++Y+  
Sbjct: 87  QHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILK 145

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +P   + + K KT      + E +++ +   +E  +     + L  +G+R  +     + 
Sbjct: 146 SPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTGIRVGELVNLNID 204

Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQ 268
            +       I   K      V         L      +           +    ++  + 
Sbjct: 205 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYIDTRTDKNKALFVTLDAPHDRLKISG 264

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT---- 323
             I  +    K  + +   H  R+  AT + D G    ++    G   +D    Y     
Sbjct: 265 VEIRLRKLGRKLSLERVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQ 324

Query: 324 ---KGADRIRLG 332
              K A +  L 
Sbjct: 325 NNVKTAHQKYLA 336


>gi|75762077|ref|ZP_00741984.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228902796|ref|ZP_04066941.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|74490430|gb|EAO53739.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228856805|gb|EEN01320.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 353

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/344 (11%), Positives = 96/344 (27%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K+  R     Y+  +     G  ++++              + +         +    
Sbjct: 3   IYKDEQRG--TYYFVTRVRQLDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKVT 52

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               T   +   Y           +S ++  +   + +I + G     +IT KHI +   
Sbjct: 53  TSSLTFSQVADSYFDWYSQRR-KQSSIVTIRNVIYNHLITEFGKLKIEQITPKHIMNYQN 111

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +++     +    +  +F ++++   +  NP       ++++     + + +  + 
Sbjct: 112 KIINQYSAKHLKKIHAVLSAIFNFSIKFHGLTTNPARITGNFEKESNKRMNFWEFEEFKQ 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234
                +    +  F  L YSG R  +        +     +I   KT             
Sbjct: 172 FIAVVDELLYKAFFSTLYYSGARKGELLALTWSDINFEEKTIDINKTEFERKVTKPKTKA 231

Query: 235 -------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGV 282
                         +K L      +     +        +       S  ++     + V
Sbjct: 232 SNRIIMLPTHCIDLLKELHCEKSKEFPVKNDYVVFGEFRSSIAVSTLSRNYQKYLKMSDV 291

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 292 KKILIHEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSH 335


>gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5]
 gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5]
          Length = 313

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 83/276 (30%), Gaps = 30/276 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140
            +L V +  ++++  D +++      Y  +    I           + +P S  +   S+
Sbjct: 23  RNLGVKTLYAYKNDVDNMVKWIDMRGYSDLDADTIMMYFLYLQNEIELSPRSIRRKYVSI 82

Query: 141 RVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTK-------------EDMQQFKSFW 186
           R    +  ++  +       S  + +      +  +K                   +   
Sbjct: 83  RQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSLISSVSAEFQSVSSEYHR 142

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVEL 237
               +     E L   GLR  +     V+          +       +     + I  + 
Sbjct: 143 RLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGKGKKERMLFISSPIVCQK 202

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
            + ++             F+N    +++       +      + +  + + H +R   AT
Sbjct: 203 LNNWILTRQEMSPADSAMFVNKSGGRLSIFSIENIYYKYRELSQINPHSTPHYLRHSFAT 262

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
              + GA   ++    G  ++   + YT+ + +R +
Sbjct: 263 QLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKK 298


>gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058]
          Length = 294

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 33/281 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126
           + EY +   +  + +  +  S+    +Q            D  K     IR  +      
Sbjct: 2   LEEYLRYLQYEKNYSSRTVSSYRKDINQFTAYYSRINNSTDISKAEIDDIRLWIAELISV 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----- 180
            K T  S  + L+SM+  +K+ +++  +  +P   V  PK        +T++D+      
Sbjct: 62  NKITSRSVCRKLSSMKSFYKFLLQKNIIDSSPV-DVVAPKIIKSLPVFFTEKDINLLGTD 120

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                   E ++  L  E    +G+R  +     +  +     +IK          E   
Sbjct: 121 EILPDDSFETARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLG---KRRKERFV 177

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--------------GVNKS 285
            F + L        +          +    +   +    KA                  S
Sbjct: 178 PFGEALENQIKHYLSIRQKRITTDNDYLFVTKHGRQLYDKAVYNIVTRELGSITTKTKHS 237

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   D GA  + +    G  ++   + YT  +
Sbjct: 238 PHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTS 278


>gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------------ITTKHIR 120
           + E+         ++ ++  ++      ++  + +                    + H+R
Sbjct: 4   VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQTTDDGVQDAAVPAETAQFDSAHLR 63

Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V +      SA    + L++ R  + W ++   ++ +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|222147672|ref|YP_002548629.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221734660|gb|ACM35623.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 349

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 107/309 (34%), Gaps = 17/309 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K++   G  + YF    G       P +  F+ AY +A++              +  TL
Sbjct: 17  VKKKLADGTPVTYFYAWKGGPPLPGKPGDPEFMAAYNAAISRKVEP---------QAGTL 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126
           + +++ ++ S+ W  LA  ++  +      I ++ G F    +  +      +    E  
Sbjct: 68  QSILNAFQVSSDWDDLAPRTKSDYVKLIKVIEKEFGTFPISGLKNRRAKSIFLSWRDERA 127

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + +   A      +  +  WA+ +  +  NPC    R  + +     WT +D   F +  
Sbjct: 128 RASRRQADYGWQVLARILSWALGRGLIEANPCEKGGRLYQGSRAEFVWTGDDEANFLAS- 186

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  LA    L++G R  D               +K  KTG  + + +      +L 
Sbjct: 187 -APPHLHLALILALWTGQRQGDLLALTWPQYDGERIRLKQGKTGARVVIPVGGPLKAMLD 245

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAH 305
                     +  D     +  FS  ++     AG V  + + +R  + T  A AG T  
Sbjct: 246 PIRQKVGHVLLTLDGTPWTSGGFSSSWRKACAAAGVVGVTFNDLRGTAVTRLALAGCTEA 305

Query: 306 ELMATYGWK 314
           E+    G  
Sbjct: 306 EIATISGHS 314


>gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2]
          Length = 319

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 42/304 (13%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKIT 115
           PTT+  ++S Y        ++ ++  ++ +        +                   I 
Sbjct: 4   PTTIAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63

Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +RS +   +      S+  + + +++  F + V Q  ++ NP   +  PK+ +    
Sbjct: 64  LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123

Query: 173 PWTKEDMQQFKSFWS---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               +      S                  +  +     E L  + +R S+        +
Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183

Query: 218 QNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNAT 267
            +         K      V         L      ++TF         F+     ++ A 
Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243

Query: 268 QFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           Q             +  +   HG+R  +AT   D GA   ++    G  T+   + YT  
Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHV 303

Query: 326 ADRI 329
           + + 
Sbjct: 304 SMQR 307


>gi|322517694|ref|ZP_08070557.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
 gi|322123682|gb|EFX95274.1| phage integrase family site-specific recombinase [Streptococcus
           vestibularis ATCC 49124]
          Length = 384

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 107/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+  +       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +     T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQNSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium]
          Length = 321

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 88/289 (30%), Gaps = 39/289 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGV-- 123
              +R+       L+ N+  ++    +   R               R++  + +R+ +  
Sbjct: 8   AEAFRRHLAVERRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGM 67

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +      S+  + + S+R  F++  R+     NP   V  PK+     R  T+ED  + 
Sbjct: 68  GQREGAAKSTLQRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARL 127

Query: 183 K--------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227
                                 +     E L  SGLR  + C      L      ++   
Sbjct: 128 IESLPPPGPQSPLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLG 187

Query: 228 KTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           K G    V L    ++ L             P      F      ++N  +         
Sbjct: 188 KGGKERLVPLGSMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLR 247

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + G+    + H +R   AT    AGA    +    G  ++   + YT 
Sbjct: 248 RRLGLPEKVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTH 296


>gi|159184306|ref|NP_353464.2| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|159139630|gb|AAK86249.2| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 342

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 118/339 (34%), Gaps = 25/339 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
               G + YY     G R+   +P  + F+ +Y  A+                    + +
Sbjct: 12  VKAKGNVYYYA-WRGGPRLD-GHPGTAAFMASYNEAIANRMEPESGR---------FRSI 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHT 129
           I+ Y+ +  +  LA +++  +  + D+I    G+    +          IR        T
Sbjct: 61  ITHYKAT-EFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDT 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +A   +  +  +    V     ++ NP   ++           WT  D+ Q K+  S+
Sbjct: 120 PRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSD 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLA 246
               +   +   ++GLR SD  +    H+  +   I T K+       +P      ++L 
Sbjct: 180 E--VKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILE 237

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGAT 303
             P        ++ K+    +  +  F     KA +   +   H +R  +AT   +AG +
Sbjct: 238 RIPKRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLS 297

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              +     W+     +   +   R    +++   ++S 
Sbjct: 298 VRVIAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNSK 336


>gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
 gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3]
          Length = 319

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 33/290 (11%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESR 126
             IS +  +       A N+ +++                         + +     +++
Sbjct: 10  QWISTFLDAQAAELGAANNTLLAYGRDLKDFTDWLERRGATLNGAERDTVEAYLVDCDAQ 69

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++  + L++++ L+++A  + + A NP + ++ P R     +     ++ +     
Sbjct: 70  GLARATRARRLSAIKQLYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLEVIEVDRLLEAA 129

Query: 187 S-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238
                   +  +     E L  +G+R S+         + +   +    K G    V L 
Sbjct: 130 RQTGRTSADRLRNTCLMELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGKERMVPLS 189

Query: 239 DGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 LA                        F        +   +F +  K  A   GV
Sbjct: 190 PPARAALAAWLTVRDAAEEDGARRGIARSPHLFPSRGKSGHLTRHRFYLLIKELAVAGGV 249

Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                + H +R   AT     GA    +    G   V   E YT   D  
Sbjct: 250 SPDTVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDAR 299


>gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
 gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 33/299 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP- 130
           I  + +        A N+   +            +          +H+R  +     +  
Sbjct: 7   IESFLEMMSAERGAAANTLSGYGRDLADYSAHCRNTRTTVMDAGAEHVRGWMARLADSGC 66

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             S+  + L+++R L+++         +P  +V+RPK      +  ++ D+ +      +
Sbjct: 67  AASTQARKLSAVRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRLLGAAQD 126

Query: 189 GSQP-------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234
            ++                  E L  SGLR S+        +         T K      
Sbjct: 127 AARKGETSAARLRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGKGAKERL 186

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN-- 283
           V +    ++ +                           +    F+   KA AT AG+   
Sbjct: 187 VPISAAALEAVEAYRQAARDHKQAPSAWLFPSRSAAGHITRQHFARDLKALATSAGLPAS 246

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRIS 340
             S H +R   A+     GA    +    G   +   + YT    +R+R  ++ +  ++
Sbjct: 247 KLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHPLA 305


>gi|239948273|ref|ZP_04700026.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922549|gb|EER22573.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 395

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 97/314 (30%), Gaps = 23/314 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTLKWLISE 77
           RI++    + + + A   A    +                 E  + P  +  T K L  +
Sbjct: 58  RIKIGRFPDLSIVDARAKAAELKSQIARGINPIEESSKVSNELNDLPISEELTFKELFDK 117

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQF 136
           Y  +    ++         +  ++  +         I    I+    +  K    SA +F
Sbjct: 118 YINNYAKHNIKR--WRDCIATMNRQAKHFYPMKISAIQKADIQQTFHNLTKFGKYSANKF 175

Query: 137 LTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L  +  +F  A+  E +  NP     +  ++  +      +           +    +  
Sbjct: 176 LEMLSAIFNKAIEWELLGKNPVTGLKKHKEQSRDRYITKEEAPQFFQALKEEQNQLMKDF 235

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               LY+G R S+      +++     +     T       +      +  +    KE+ 
Sbjct: 236 ILISLYTGARKSNVLSMRWENVSFGNKTWYIADTKNGDPQTVVLIEEAIKILEARKKESE 295

Query: 256 FINNDKQKMNATQF----SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
                  + +++         +K   T+AG+ +   H +R+   +  A  GA+ + +   
Sbjct: 296 SEWVFPSEASSSGHLQEPKKAWKRICTRAGLKDLRLHDLRRTCGSWMAINGASQYVIGKA 355

Query: 311 YGWKTVDQAETYTK 324
              K+      Y +
Sbjct: 356 LNHKSPTSTAIYAR 369


>gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 317

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 85/269 (31%), Gaps = 18/269 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +                      +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR S+        +   N    ++  K        L    + LL 
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                             +         + +FK  A  AG+  + S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
           +G     + +  G       + Y   +++
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
 gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13]
          Length = 327

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI  +  +      +  S   + S  +  IRK G  + R ITT  +RS +   + T  
Sbjct: 50  SELIDIFLSAKRVEGCSDKSMHYYRSTLNNAIRKIG-KNIRHITTDDLRSYLNDYQLTSG 108

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    
Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           EG +     + L  +G+R  +  +     +       I T K      V         L 
Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +                ++  +   I  +    +  + K   H  R+  AT++ D
Sbjct: 228 RYFAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G +++D    Y 
Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311


>gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
 gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185]
          Length = 328

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 82/262 (31%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+  +  +      + NS   + S  +  + K G  +   ITT  +R  + + +     +
Sbjct: 53  LVENFISAKKVEGCSPNSIAYYRSTINNALIKLG-KEVIHITTDDLRHYLNTYQSESGAS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        +T E ++  +      
Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLELMRDHC-SN 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  +     +  +    I T K      V         L   
Sbjct: 171 PRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDKQRKVYFDARTKIHLQKY 230

Query: 249 PIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +                ++  +   I  +       + K   H  R+  AT++ D G
Sbjct: 231 INSRTDNNEALFVSLLAPYDRLQISGVEIRLRQMGKDLNIPKVHPHKFRRTLATMAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G +++D    Y 
Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312


>gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
 gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium
           damselae subsp. damselae]
          Length = 499

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 99/319 (31%), Gaps = 13/319 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLI 75
            G+ +Y  R     +++     ++  +    + L       E++ +     +  TL   +
Sbjct: 35  KGRKVYQVRTRTDNKVKTRTLGDTATLALKEARLMAKKQVNEWLEAQSDISQSPTLGTFM 94

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSA 133
               K   +      ++++   Y    ++   GD+    +  + +    E+    T   A
Sbjct: 95  QCEWKEQVFNRWKPRTQVTASHYMTKWLLPSLGDYALVNLGYREVNEWFENMSLTTKGGA 154

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + L  ++ +F  A+R  Y   +PC  + R  +K         E     +      S   
Sbjct: 155 NRALDVLKSVFVLAMRLGYCHHDPCRLINRNPKKRFNRFLSRSELKNLGEILARLESESA 214

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              Q       LL +G R S+        ++ N+  +   KTG        D    L   
Sbjct: 215 SYQQQANIVRMLLLTGCRVSEILTLQWTMIKPNLIDLPDSKTGARTVYLSEDANAILRLQ 274

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             +    F      +       S +++     A V     H +R   A+ +A  G +   
Sbjct: 275 PRMTPWVFPAPRTDKPYT--SISAFWQKVRNLANVPEVRIHDLRHTFASYAALQGNSVPM 332

Query: 307 LMATYGWKTVDQAETYTKG 325
           +    G         Y   
Sbjct: 333 IAKMLGHSRFSMTLRYAHV 351


>gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR]
 gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR]
          Length = 282

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 18/264 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKH 128
            L+ + + +      +  +   +  +     +  G      +    +R  +      RK 
Sbjct: 3   ELLRKMQMNLVIAGFSPKTHDDYLRHVKHFQKHFG-KPLEHMGYDEVREFLHHAITQRKL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S   Q  +++R  ++  +  ++        V R KR+       + ++++      ++
Sbjct: 62  SCSYVNQTYSAIRFFYETVLGWDW----NMKQVPRVKREKTLPAVLSIDEVKA-IFNVTK 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA 246
             + +        +GLR  +  R  +  + +    I  K  K        L    + +L 
Sbjct: 117 NIKHKAILMTTYAAGLRVGEVTRLKISDIDSKNMQILIKLGKGKKARYSLLSPANLSILR 176

Query: 247 MTPIGKETFFINND----KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    +         + ++       F      AG+  + S H +R   AT   +A
Sbjct: 177 QYWRQYRPSYWLFPGKPSDKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEA 236

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     +    G  ++     Y  
Sbjct: 237 GTDILHIQQLLGHTSIHTTCIYLH 260


>gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578]
          Length = 299

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH 128
           + L+  YR         +  +  ++    ++          +   ++ +     +   + 
Sbjct: 6   ERLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVETVSRRTCEEFIVDERG 65

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +  + ++++R  F++ V +     NP   ++ P+      R   +E+++     
Sbjct: 66  EGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                 EG + R   E L   GLR S++C   +Q +  +   +K +              
Sbjct: 126 VDTTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKE 185

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
               +         +         ++  F+N   ++++     I  K     +GV+   H
Sbjct: 186 AGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             R   AT     GA   E+    G   +   + YT   D  RL 
Sbjct: 246 TFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289


>gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
 gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella
           parvula ATCC 17745]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/346 (10%), Positives = 101/346 (29%), Gaps = 24/346 (6%)

Query: 13  KERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTT 70
           +++ +  +II  ++ G   ++              Y    +               K  T
Sbjct: 8   RKKDKGYQIIVSYKDGIKWKQKSKQGFSTQREAKLYGQKIIDELRKTVTNPLDDSLKNIT 67

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L   Y +      ++ N+++ ++     +         R I+ + I   +   +   
Sbjct: 68  FIELCELYMREKI--GISENTKLVYQYIIKNL-SVLHQKRVRDISHQMIFKTLSDIEFAN 124

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +    +T ++ +F +A++   +  +           +  + +  +T ++M      + +
Sbjct: 125 RTKNMHITFLKSVFNFAIKPYRIIRSNPVADIKRFTTKTYKSLTTFTIDEMDLLLKTYID 184

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITV 235
             +         Y+G R  +        +     +I+  K  +                 
Sbjct: 185 NKKLYTLLCIARYTGARYGEILALTWLDIDLAYNTIRINKQWSRTSNNTFGVKEPKTRNS 244

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                   +L+   +  ++         +N +  +            NK+ H  R   AT
Sbjct: 245 IRTLPIPPILSNILLEYKSISNTERLFNINTSS-TGNVNYAIRTIVPNKTIHAFRHTYAT 303

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRLGIKNSRRI 339
                G     + +  G   ++     Y   +D   +   ++  +I
Sbjct: 304 TLLANGVDIKTVASLLG-DNINTVMNVYVHYSDEMRKNAAQDVSKI 348


>gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas
           aeruginosa PA7]
 gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas
           aeruginosa PA7]
          Length = 404

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 100/374 (26%), Gaps = 52/374 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPH-------ESTFIPAYMSALTGSTPKREYIN 62
            +    T +G   Y  R   G++  L               +     A     P    + 
Sbjct: 29  GLFVRVTANGHKAYVLRWARGKKRTLGRVGVLTLDQARKEALQDLAEAREHGEPLAVALG 88

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--- 119
                  TL+  I ++        L   S+    +  +    +       +IT + +   
Sbjct: 89  RKNSTTPTLRDFIDDHYSPWMDTHLKSASKT--LNLINVGFAEIMSKRLTEITQRDLETL 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R   ++  +T S+A + + S+R     AV   ++  +P   +++ K    G   +   D 
Sbjct: 147 RISWQAAGNTDSTANRKMASLRGALSRAVEWGFLDDHPMARLKQIKTDRAGRVRYLLPDE 206

Query: 180 QQFKSFWSEG-------------------SQPRLAFEFL--------------LYSGLRC 206
           ++      E                     + RLA                  L +G+R 
Sbjct: 207 EKRLRQAMEDRQESIRTDRDSANQWRAERKKERLADLREVLFVDHLKPLVLLSLNTGMRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            +        +      +  +    K+G    + L    ++ L                 
Sbjct: 267 GEVFNLTWADIDLTNKLVTVEGEGAKSGQTRHIPLNKEALETLKGWRKQHPRNTGYVFPG 326

Query: 263 KMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K           ++     A V     H +R   A+    AG   + +    G   +   
Sbjct: 327 KDGERLDNVKKSWEGLLKLANVTGFRWHDLRHTFASKLVMAGVPLNTVRELLGHSDITMT 386

Query: 320 ETYTKGADRIRLGI 333
             Y   A   +   
Sbjct: 387 LRYAHLAPDSKAAA 400


>gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia fergusonii B253]
          Length = 357

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +  R     
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R       TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADVITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG        
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245

Query: 233 -ITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L       L       G ET   +   + ++    S +F      +G+       
Sbjct: 246 LRIDALNISLADTLQKCRKASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022]
 gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase
 gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022]
 gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022]
 gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69]
 gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83]
          Length = 357

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREY 60
              LPP +     R+     Y     G+   L          A  +    L+G+  +   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLI 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKSASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +             +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQQCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC
 gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 89/286 (31%), Gaps = 29/286 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK-------------ITTKHIR 120
           + E+         ++ ++  ++      ++  + +                    + H+R
Sbjct: 4   VDEFLTYLQVERQVSAHTLDAYRRDLAALVVWASEQKTDDGVQDAAVPAETAQFDSAHLR 63

Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V +      SA    + L++ R  + W +++  ++ +P  ++  PK   +  +    +
Sbjct: 64  QFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLDAD 123

Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTII 233
           +  +          G + R   E    SGLR S+ C    + L  +    +   K     
Sbjct: 124 EAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQR 183

Query: 234 TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
            V +    +  L               F       ++     I  K  A + G+  +   
Sbjct: 184 LVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH-LDFQHLA 288


>gi|294849556|ref|ZP_06790298.1| phage integrase [Staphylococcus aureus A9754]
 gi|294823693|gb|EFG40120.1| phage integrase [Staphylococcus aureus A9754]
          Length = 353

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 13  KERTR--HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKP 68
           + +TR   GK   Y  K  G+R R               A +    K   + S       
Sbjct: 8   RMKTRCYDGKKWQYEFKYEGKRYRKKGFRTK------REANSAGLDKLNELRSGFNIDNY 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES-- 125
            TL+     + K+     +  N+   + +    I +   G  +  KI  +  +  +    
Sbjct: 62  ITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYS 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQ 181
           ++H   +  +   ++R     A+    +  NP   V      P +  +       E    
Sbjct: 122 KEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEIL 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIIT 234
                 + ++  LA   ++ +G R S +    ++H+     +I               I 
Sbjct: 182 KDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIA 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                  M +++   I  + +        +N    +   K+      ++  ++H +R   
Sbjct: 242 KSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHTH 301

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            +     G + H +    G K +      Y+   +  
Sbjct: 302 CSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEK 338


>gi|254437403|ref|ZP_05050897.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252849|gb|EDY77163.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 372

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 106/320 (33%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  ++I   +     ++        +I+   +    ++
Sbjct: 98  IGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLSLHLKDWMRLPLDEISKGMMVRRHQA 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +A  P +++E  + K +G R        +    
Sbjct: 156 MSGSPSAANHVLRSFRAIYNHARRTCDLAECPTMAIEWFEDKPDG-RIIENLRHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++        +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSRDWVF------PSPKSETGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + Y K
Sbjct: 326 IVGRLLNHTPLSITGQRYVK 345


>gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
 gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A]
          Length = 386

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49
           MT      + P  + +++  +G +  Y   +R G  ++  L                  +
Sbjct: 1   MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60

Query: 50  ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99
             T    K + +   +    +           +  YRK          +  +  ++ S  
Sbjct: 61  LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESEGNWGNWRSCL 120

Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139
             +     +   ++ IT + I    +          ++  P          S    ++  
Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R     A  +  + +NP   +E  K         T E+++Q  +        + AF 
Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F   +GLR SD  +     +Q      +          +               +     
Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                       S+  +  +  A +NK  + H  R   A +  D GA  + +    G K 
Sbjct: 301 PVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360

Query: 316 VDQAETYTKGADRIR 330
           +   + Y K  D+ +
Sbjct: 361 LATTQIYAKVLDKNK 375


>gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
 gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 28/291 (9%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE-- 124
              ++++Y         L+ ++  S+      +       G  D   +T + +RS +   
Sbjct: 8   WAQILADYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLRSHLATL 67

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S     ++  +  T++RV   W  R     ++    +  P  +       +  DM++  
Sbjct: 68  KSLGRARATLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMREVL 127

Query: 184 SFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
              +         G++     E L  +G+R  +     +  +  +   ++   K     T
Sbjct: 128 DAATAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRVLGKGRKERT 187

Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-GV- 282
           V         L             PI      +     +++          +     GV 
Sbjct: 188 VPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHDRLGAVDGVA 247

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +   HG+R  +AT   + GA    +    G  ++   + YT  ++      
Sbjct: 248 DLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAA 298


>gi|160937668|ref|ZP_02085028.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439313|gb|EDP17065.1| hypothetical protein CLOBOL_02558 [Clostridium bolteae ATCC
           BAA-613]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 102/398 (25%), Gaps = 69/398 (17%)

Query: 13  KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + R R     + F   K +G+R  + +    T   A  +                    +
Sbjct: 5   RTRKRGSTWEWSFEGAKINGKRNPISHGGYRTKAEAITAGTQAKAEYDSAGRRFTPSDIS 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   +  +  +    +L+ N++  +E      +    G +    + T  I+  ++  K  
Sbjct: 65  VSDYLDYWYDNYVKTNLSYNTQKDYEKKIRVHLKPAFGKYRLASLETDVIQKWIDGMKRQ 124

Query: 130 PSS---AIQFLTSMRVLFK---WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             S       L+ +        +  +           + +     E         +++  
Sbjct: 125 GYSRSMVKNTLSCLSGALGYAVYPCKYIKYNPCDYARIPKIVMSDEAKAHTEYICVKEDF 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------FS 223
           +   E   P   F   L +G  C             +                     + 
Sbjct: 185 AAIIERFGPDSNFYVPLMTGYHCGTRLGEAYGIDLLHDVDFERHTITIQHQLTNEGGKWY 244

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------- 264
            +  K  ++ T+++   + K+L      ++   +   +                      
Sbjct: 245 YRPPKYDSVRTIKILPEYEKILKTEIHNRKKNMLRYGQYFTKTYQMDDGLIFQAPSNVKI 304

Query: 265 -----------------NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                                F    K    + G     +H +R    T+ A+ GA    
Sbjct: 305 VGKEIMPISAKENGELLTPYSFKYCAKVIHEELGNPLFHSHCLRHTHGTLLAENGAQPKT 364

Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           +M   G K +      Y    +  ++       ++  +
Sbjct: 365 VMERLGHKDIKTTMDRY--VFNTEKMQNDAIVILADAI 400


>gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922]
 gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 355

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 94/265 (35%), Gaps = 16/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
              ++       S + N+  ++ + F   +    D     +T   +++         K +
Sbjct: 82  AFKQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDDVAVENLTPDQLQAYFLVCATQHKLS 141

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++    + +++    +   +          + RPK+  +  +   ++++       ++ 
Sbjct: 142 EATINSRMNAVK----FYYEKVLKYERMFFDIPRPKKPLQLPKTLNRKEILL-LFSVTDN 196

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            +  +  +     GLR S+  +  +  + +   +++ ++        V LP   ++ L +
Sbjct: 197 LKHLMILKLCYGMGLRVSELAKLKIIDIDSQTMTVRIERGKGKKDRFVTLPQSILEDLRL 256

Query: 248 TPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
             +     +   + +    ++       FK    KA + K+   H +R   AT   + G 
Sbjct: 257 YYVTYRPSYFLFEGRGGSEISTRTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGT 316

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G +++    +YT  ++
Sbjct: 317 DISHIQKLLGHESIKTTLSYTHVSN 341


>gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2]
 gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2]
          Length = 405

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 103/385 (26%), Gaps = 62/385 (16%)

Query: 20  KIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           K  Y +       G+R +       T   A   A        +      +K  T +    
Sbjct: 22  KWYYRYDIVDPTTGKRKQKEVGGFRTKAEAEEEAKRIQYELLQ-GTYIEEKEITFEEFAK 80

Query: 77  EYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           E+           V++    +    +++        + IT K  +  +   K    +   
Sbjct: 81  EWLIWYENTGKVKVSTIRVRKHEISRLMDYFQYLKMKDITRKQYQEALNDLKARGYAENT 140

Query: 136 F---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---------GIRPWTKEDMQQFK 183
                 + R++FK A+  E +  +P      PK +             +   KE++  F 
Sbjct: 141 IDGAHRTGRMIFKRAIELEVIKTDPTEYAIVPKVQKTVEELEREKELPKYLEKEELAHFL 200

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------- 230
                     +    F  L Y+G+R  + C      +     +I   KT           
Sbjct: 201 SIIPDHQMDIRDYPIFLTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRNAIKEY 260

Query: 231 ---------------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                           E+     K               N    
Sbjct: 261 ELLTPKTKKSKRVIDVTKDVLIELDKLRKAQKEVQMKHRKTYHNEGFVFAQLDEVNAGYP 320

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                  I  K     A +N   + H +R    ++ A+AG +  ++M   G    D  + 
Sbjct: 321 AYVKLIEIRMKRLLKIANLNPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDDDTTKN 380

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y       +   + S + S ++ S
Sbjct: 381 IYLHITKPKK--KEASHKFSELMRS 403


>gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 93/300 (31%), Gaps = 22/300 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-------FDQIIRKSGDFDYR--KITT 116
           K  TT      +Y +       A  S   +  Y        + +  K G  D    ++T 
Sbjct: 104 KVKTTFVEFYDKYLEDIKAQVGAGKSIALYHKYSAARSHFVNFLHAKYGRKDLMPGELTH 163

Query: 117 KHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             I       K       +SA + L   + +  +A +   +  +P L+      +     
Sbjct: 164 LIIHDFEIYLKTVVSLKSNSATKTLKFFKTVVIFAQKCGVMTHDPFLNH-HFHLEPVDRG 222

Query: 173 PWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             T E++Q+      E  +    R  F F  + GL   D      +++            
Sbjct: 223 FLTDEEIQRIMQKDFEIPRLEMVRDVFIFSCFCGLAYIDVAHLTQENIITLDNRPWIIIN 282

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSA-- 286
                V+     +++  M     +    +N    + +  + + + K  A   G+ K    
Sbjct: 283 RQKTNVQSNIPLLEIPQMILDKYKGKTKDNRLLPVLSNQKINAYLKEIADLCGIKKRLSY 342

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVVD 344
           H  R   AT+    G     +    G   +   + Y +  ++   +  ++ + +     +
Sbjct: 343 HLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQVADKFDGFKN 402


>gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
 gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787]
          Length = 327

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 77/263 (29%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKH 128
             +  +  +      +  +   +    + ++   G     ++TT+ +R         RK 
Sbjct: 51  DAVEAFITAKRIEGCSEKTLRYYRKTIESMLSAIGKK-ASQVTTEDLRKYLTTYQTQRKS 109

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +       +   F W   ++++  +P   + + K        +T E ++  +   + 
Sbjct: 110 SKVTIDNIRRILSSFFSWLEDEDFILKSPVRRIHKVKTAKLVKDTYTDEALELMRDNCTT 169

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
            ++     + L  SG+R  +      + +  N               V         L  
Sbjct: 170 -TRDLAIIDLLASSGMRVGEMVMLNREDIDFNERECVVIGKGNKERLVYFDARTKIHLQN 228

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +           N    ++         +    +  + K   H  R+  AT + D 
Sbjct: 229 YLNERTDTNPALFVSLNPPHDRLMIGGVETRLRELGKRLNLPKVHPHKFRRTLATSAIDK 288

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 289 GMPIEQVQQLLGHQKIDTTMHYA 311


>gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 84/274 (30%), Gaps = 24/274 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            + +      +      + A ++  ++     ++          ++  + ++        
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ S+      ++   +++ +++E+  +          R        ++++     S  
Sbjct: 62  TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
            +  + R     +   GLR S+  R     +  +     ++  K      V LP    ++
Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176

Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L    +      +   +              M+       FKA    +G+ K  S H +R
Sbjct: 177 LRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   +AG     +    G  +      Y+ 
Sbjct: 237 HSYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270


>gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 76/273 (27%), Gaps = 21/273 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125
             L+ ++          + N+ +++       +          +   +   +  +  +  
Sbjct: 7   DQLLDDFLDYLFLERGCSENTILAYNRDIKAWLDFCDKNDQPAYPPNQTYLERYQRSLHE 66

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + + S+R   ++   ++ V     L    P +         + ++++    
Sbjct: 67  EGKKRSSQQRAIASLRSWLRYLDSEKLVEEEVTLPT-LPLKGDSLPHILNEGEVERIFEA 125

Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    + R   E     GLR S+ C   ++ +  +  +++    G     +     
Sbjct: 126 CSGNSFLALRDRAILETAYGCGLRASELCTICLRDIDFSGRTLRIFGKGGKERIIPFLGE 185

Query: 241 FMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVNKS---AHGVRK 291
             + +                        +         K +   AG++ S    H +R 
Sbjct: 186 VSRRVGFYMEKARPDAHVQELFISKTGNPLRREDIWRIVKKRGAAAGISSSRLFPHILRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT     G     L    G  T+   E Y  
Sbjct: 246 SFATHLLRRGMDLRTLQELLGHATIATTEKYVH 278


>gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
 gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641]
          Length = 263

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 17/247 (6%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           I  + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP 
Sbjct: 3   IGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPA 62

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQ 215
             +  P+      +    +++ +            + R   E +  +GLR S+      +
Sbjct: 63  KGISTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCK 122

Query: 216 HLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNAT 267
           H+   +       K      V +    +  L              +  F+ N  ++++A 
Sbjct: 123 HVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISAR 182

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                F     K GV  +   H +R   AT   ++      +    G   +   + YT  
Sbjct: 183 NVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH- 241

Query: 326 ADRIRLG 332
            D   L 
Sbjct: 242 LDFQHLA 248


>gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320]
 gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320]
          Length = 327

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%)

Query: 11  VTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T ++   G+     R    +G+RIR    ++     A+   +  +  K+E+    +   
Sbjct: 1   MTIKKLEDGRYEVDIRPTGRNGKRIR-RKFNKKHEAIAFERYVMANHSKKEWGTKLKDIR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             L  L+  +     +G  + N + ++ +   ++ +     +  ++T+K I      R  
Sbjct: 60  P-LDELVELWWN--MFGKHSENGKSNYNNAM-RVCKGMHSSNVSQVTSKSISFYQNERFA 115

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               PS+  + L ++R +F   ++   Y A NP +  ++ K     +   T ++ ++   
Sbjct: 116 KGIKPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKINASEMSYLTLDETRKLL- 174

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +          F L +G R  ++ +   +H+  N       KT     V +       
Sbjct: 175 -ANLEGDYYNIAVFCLSTGARWGEAMKLKREHIIENKVRFTYTKTRKARIVPISKELCDQ 233

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +                  ++   F    K+        ++ H +R   AT     G + 
Sbjct: 234 ICKGKKDLLFSS-------VSYQVFRKILKSVKPSLPDGQATHVLRHTFATHFMINGGSI 286

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G  ++ Q  TY   A
Sbjct: 287 ITLQRILGHASLKQTMTYAHFA 308


>gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 420

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103
            Y SA+  +  + E      +         +    S    + + +  +++       ++ 
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNG-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
                  ++ I+ K +          P           ++A  + + ++   K A   EY
Sbjct: 165 SHGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQSL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I          +   +A+  S
Sbjct: 285 KWKQIQQTNKGTWQAVVVQQKTKRPDYKPVIQQALQLCGIRPNDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|293383852|ref|ZP_06629758.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|293388673|ref|ZP_06633167.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|307286791|ref|ZP_07566875.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|312906933|ref|ZP_07765930.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|312978812|ref|ZP_07790538.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|291078769|gb|EFE16133.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis R712]
 gi|291081990|gb|EFE18953.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis S613]
 gi|306502103|gb|EFM71388.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|310627187|gb|EFQ10470.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 512]
 gi|311288249|gb|EFQ66805.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis DAPTO 516]
 gi|315032392|gb|EFT44324.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0017]
 gi|323480155|gb|ADX79594.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 384

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 110/368 (29%), Gaps = 54/368 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 4   IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 61  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+        Q  V        +      + I+ +T
Sbjct: 121 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 300

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E+    G   +    
Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360

Query: 320 ETYTKGAD 327
           +TYT   +
Sbjct: 361 DTYTHLTN 368


>gi|257084635|ref|ZP_05578996.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992665|gb|EEU79967.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 377

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/377 (12%), Positives = 103/377 (27%), Gaps = 49/377 (12%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y F          G+ +        T   A ++         E     
Sbjct: 4   INKYTKKDGTTAYMFNAYVGRHPKTGKNVYRKRQGFKTKKQAQIALAEILKDIEENGLDN 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
           +    T K L  ++       ++  ++      +    ++   GD     IT    +  V
Sbjct: 64  KHSVLTFKQLYDKWLAQQRL-NVKPSTIALNRRFVERHVLPYIGDCLLSDITVIQCQDLV 122

Query: 124 ESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +       +       + ++A   E +  NP      PKR  E  +       +  
Sbjct: 123 NEWFNQGYKQYTYFRKVTAQIMRYAEAMEIMLSNPMSKTILPKRPKEEEKLKYYTKEELM 182

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221
             F         +    F  L ++G R S+      + L                  NN+
Sbjct: 183 HFFKCLKEFGNFKQLAFFRLLAFTGCRKSEILSLQWKDLDLINKSVSIGKTLALDEDNNV 242

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------A 266
                +   +  ++ L D  ++++      + + +        +                
Sbjct: 243 IIQTPKTESSNRSISLDDETVRIMTKWRTIQRSDYFQMGFNTSSEEQYIFTNDRNELYYP 302

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              + W K    K  +   + H  R   A++   +G    E+    G K        Y+ 
Sbjct: 303 QVVNDWLKYLIKKYKLPIITPHHFRHTHASLLLQSGVPMKEVSERLGHKDTTITDRIYSH 362

Query: 325 GADRIRLGIKNSRRISS 341
                +   K + + +S
Sbjct: 363 VMPEEK--EKTADKFAS 377


>gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 86/271 (31%), Gaps = 21/271 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRK--SGDFDYRKITTKHIRSGVES 125
           + ++ E+ K       A N+  ++    + Y   +       D    +I    ++   + 
Sbjct: 4   EHILKEFEKQLIEQRYAPNTIRAYLDYSKLYLQHVQPYESLQDVPLSEIE-SFVKQKSDQ 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +      +   +    K               +   ++     + ++KE++++    
Sbjct: 63  ISIS------YQKGLVGAIKKIHDLVGKQKLELKFLYPKRKFESLPKYFSKEEIKRIFDA 116

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK 243
                + +     +   GLR SD     +  ++ +    SI++ K      V LPD  +K
Sbjct: 117 T-PNVKHKAILMIIYSCGLRVSDLINLKMSDIKTHDKLLSIRSTKNSKDRWVTLPDPLIK 175

Query: 244 LLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298
           +L       +      +     + +     +  K      G+    + H +R   A    
Sbjct: 176 ILRSYYNEYQPKNYLFENPDGGQYSERSVQLILKRALKNGGIKTAGTVHSLRHSFAIHLL 235

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +G   H + +  G +++   E Y +     
Sbjct: 236 QSGTDLHTVQSLMGHQSIKTTEIYAQMIQSK 266


>gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 270

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 83/256 (32%), Gaps = 17/256 (6%)

Query: 77  EYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----P 130
           E+ K        +  +  S++   + I       ++ +    HI   +   +       P
Sbjct: 2   EFLKYLEDIRGYSDLTIKSYD---ESITEALKSIEFVQ-DKNHILLNLMPYRIKISTLNP 57

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L+++R    +    E          +  K      +P +  ++ +  +  S   
Sbjct: 58  KTISKKLSAIRSFADYLNDNEI--SVMLKGDDSIKVAKTLPKPISHVNIIEAINLASLD- 114

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248
             R+        GLR S+     ++++ +        K      V L +   K+L     
Sbjct: 115 -ERVVVTLFYTLGLRISELASLELKNVSDEWVR-VIGKGSKQRDVPLLEQSKKVLDEYLS 172

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
               + F    + +K++             + G+  S H +R   A+   +  A   ++ 
Sbjct: 173 KSPHKKFVFEKNGEKLSENSLRYIITKVFRRVGLKVSPHQLRHSFASQLLNGNAPIADVS 232

Query: 309 ATYGWKTVDQAETYTK 324
              G  ++   + YTK
Sbjct: 233 ELLGHSSMATTQIYTK 248


>gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1]
 gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC
 gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 87/275 (31%), Gaps = 20/275 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH---TP 130
              Y +S     L+ ++  ++     +      +  D   +  +H +  +        +P
Sbjct: 12  FEAYMQSE--RQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKLHRKGLSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S   +L++++   ++ +R   + +NP   +  PK+     +    + +           
Sbjct: 70  RSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLEIDGNDP 129

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
              + +   E    SGLR ++     +  +Q +   ++   K      V +    +  ++
Sbjct: 130 LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRYAIDAIS 189

Query: 247 MTPIGKETFFINNDK-------QKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATIS 297
                +      ++        ++++                  +    H +R   AT  
Sbjct: 190 AWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHM 249

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            ++ A    +    G + +   + YT   D   L 
Sbjct: 250 LESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283


>gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 288

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 93/260 (35%), Gaps = 20/260 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127
               ++ K+     L+ N+  S++    Q I    +     +D  KIT     + ++ + 
Sbjct: 6   QAFIDFLKNE--KKLSDNTVESYKRDITQFIGYLKENNIEYYDVNKITIISYLNFLKHKN 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  + L+S++  +++    +++   P  +++ PK + +     + E + +  S   
Sbjct: 64  MSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQVDKLLSHEF 123

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           E    G + +   E L  +GL+ S+     ++ +  N       K+     + + D  + 
Sbjct: 124 ENSEKGLRDKAILEVLYATGLKVSELISLHIKDVNLNYGY-IYCKSSKERFIPIGDSALN 182

Query: 244 LLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295
            L      +     +           +         K        G + +   +RK  A 
Sbjct: 183 ALQNYISVRRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGFDITPSILRKSFAK 242

Query: 296 ISADAGATAHELMATYGWKT 315
              + GA    +    G+K+
Sbjct: 243 HMLENGADIRSVQEILGYKS 262


>gi|228905038|ref|ZP_04069077.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
 gi|228854583|gb|EEM99202.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis IBL
           4222]
          Length = 353

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/344 (10%), Positives = 98/344 (28%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K+  R     Y+  +     G  ++++              + +         +    
Sbjct: 3   IYKDEQRG--TYYFVTRIRQFDGTLKQVKRRGFKTKKEAREAEAKM--------LVEKET 52

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               T       Y           +S  + ++   + ++ + G+    +I  KH+ +   
Sbjct: 53  TSSLTFSQAADSYFNWYSQRR-KQSSIETIKNVIYNHLVIEFGNLKVEQIIPKHVMNYQN 111

Query: 125 SRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  S+    +    +  +F ++++   +  NP       ++++     + + +  + 
Sbjct: 112 KIINKYSAKHLKKIHAVLSAIFNFSIKFHGLTNNPAKITGNFEKESNKRMNFWEFEEFKQ 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240
                +    +  F  L YSG R  +        +  +    +I   +    +T      
Sbjct: 172 FILAVDDPLYKTFFSVLYYSGARKGELMALTWSDINFDEKTININKTEYNRQVTEPKTKA 231

Query: 241 FMKLLAMTPIGKETFFINN------------------DKQKMNATQFSIWFKAKATKAGV 282
             +++ +     +                            ++++     F      A V
Sbjct: 232 SNRIIMLPSFIMDMLHDIKKTAALNAPVKSDYVVFGEFYNSISSSTLRQKFIKYIKIAQV 291

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            K   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 292 KKIVLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335


>gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 378

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 52/365 (14%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+        +G+R  L              AL     +++          T+K  +  +
Sbjct: 17  GRWAAVISLDNGKRKTLYGKTRKEVQEKLKKAL----HEQQEGRLITAPQQTIKHYLEYW 72

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
            +  H  ++ + +   +E      ++   G    +K+  +H+++   S+     SA   +
Sbjct: 73  LEEVHRQNIRIRTYERYEEIVRLHLVPALGHHMLQKLAPQHLQTFYNSKLREGLSATTVI 132

Query: 138 T---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    +      A+R   +A N C  V  P+RK   +     E  QQF S          
Sbjct: 133 SFHNVLHKALDHAMRWRLMAYNVCDLVSPPRRKHIELETLNMEQAQQFLSAV-RDHPQEA 191

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------------------ 230
            F   + +G+R  +      + +      ++ ++                          
Sbjct: 192 LFLLAIGTGMRRGEIMGLKWRDIDLATRRLQVRRVLTRIPSRISGKGYIEDEPKSEKSRR 251

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                           V   +  +K           F  +              FK    
Sbjct: 252 NIVLPSFVLEGLKQHRVRQLEAKLKAGPRWEEHDYVFCTSVGTHVNPDRDIQEPFKKLLK 311

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-----DRIRL 331
           KAG+     H +R  +AT+    G     +    G   ++   + Y+        D +RL
Sbjct: 312 KAGLPNIRFHDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHVLPTMQKDAMRL 371

Query: 332 GIKNS 336
                
Sbjct: 372 LDDAL 376


>gi|229096923|ref|ZP_04227892.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
 gi|228686533|gb|EEL40442.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Rock3-29]
          Length = 368

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 106/365 (29%), Gaps = 43/365 (11%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A    +     +            TL
Sbjct: 7   KRGNKYCIVIDIGADPETGKRRQKWFSGYKTKKEAEKD-VAKKITELNDGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + E+ K      +  ++   +E      +I   G   + K+    I+    +     
Sbjct: 66  KDYLLEWLK-VKEMEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYRNLTGKL 124

Query: 131 SSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           S++   L    +      A+ Q  +  NP     +PK++   I+ WT+E+++ F      
Sbjct: 125 SNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTFLLHSQ- 183

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------GTIIT 234
            S+    F   + +G+R  +      Q +  +  ++   +T               +  T
Sbjct: 184 NSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKTSSSKRT 243

Query: 235 VELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKAKATKA 280
           + +P   +  L    +  +                        +    F   +     KA
Sbjct: 244 LPIPIETINALKKHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYYTIIQKA 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            V K   H +R   AT+    G     +    G   +      Y+       +     + 
Sbjct: 304 NVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSHVLPN--MQEDAVKN 361

Query: 339 ISSVV 343
            +  +
Sbjct: 362 FAKNI 366


>gi|124515110|gb|EAY56621.1| putative phage integrase [Leptospirillum rubarum]
 gi|206603735|gb|EDZ40215.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 325

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 93/315 (29%), Gaps = 12/315 (3%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G      ++    RI            A+   +     +  +++    + TTL   +
Sbjct: 6   KRSGSWRAIVKRKGFDRIT-RTFDTKASAEAWARQIEAEMDRGVFVSRKEAESTTLSEAL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y +             +  S +                   + +  + R     SA  
Sbjct: 65  DRYEREVSSSKKGHRREKTRISIWKN--HPLAKRVLASFRGNDLAAYRDERIKAGYSANT 122

Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF+ A ++  +    NP  ++  P       R     ++++     SE  
Sbjct: 123 IRLELAIISHLFEIARKEWGMEGLTNPVKAIRMPSPPAGRDRRLQPGELEKLLESSSEEM 182

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                  F L + +R  +      + +     ++   +T       +P  F+  L++   
Sbjct: 183 NQ--VIRFALETAMRRGELAGMTWEMVDMKKRTVTLPETKNGQKRIVPLSFV-ALSILKE 239

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
              T  ++     +     S  F      AG+     H +R  + +   + G    E+  
Sbjct: 240 RLGTRRLDGKVWDIGLDAISQDFAKACRNAGISGLHFHDLRHEATSRLFEKGFDTMEVRT 299

Query: 310 TYGWKTVDQAETYTK 324
             G KT+     YT 
Sbjct: 300 ITGHKTLQMLARYTH 314


>gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium
           chlorochromatii CaD3]
 gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium
           chlorochromatii CaD3]
          Length = 338

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 49/300 (16%)

Query: 75  ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH- 128
           I  + +  A    L+ N+ +++     Q            D R    + +          
Sbjct: 23  IQAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLELLDLRAFQPESVTPMDVRLFMG 82

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     S  + L +++V +++      +      S+  PK         T+E   +
Sbjct: 83  FLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSSLGSPKFPQRVPNFLTEEQTSK 142

Query: 182 FKS--------------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                                       ++     E L  SGLR S+     +  L    
Sbjct: 143 LFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLYSSGLRVSELVNLRMDELDVER 202

Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSI-------- 271
            +     K      V +    ++ L      +  FF  N + +   +   +         
Sbjct: 203 GYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMNKEVEPFTSVFVTQKGAKIYPM 262

Query: 272 -WFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +  A    +      K+ H +R   AT   ++GA    +    G   +   E YT  
Sbjct: 263 LVQRVTARHLSLVTEQKKKNPHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHV 322


>gi|310825725|ref|YP_003958082.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308737459|gb|ADO35119.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 412

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 113/383 (29%), Gaps = 62/383 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-- 66
            ++T  +  HGK IY        R  +    E+    +   A      K++  N P    
Sbjct: 19  RYITGYKEIHGKAIYRSIYADTYREIVALLEEAEKSVSEKVAFERLIRKQKRNNLPVTSL 78

Query: 67  --------------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
                           TTL+  + ++ +     S+  +S   + S     I+ + GDF  
Sbjct: 79  EHMAENYSFRNSVQGGTTLRQCLVQWLEEHKKFSVKASSYTRYCSIVYKHIVPQLGDFPV 138

Query: 112 RKITTKHIRSGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
             +T   ++  +   +          PS+    L  +   F+  +  E V  NPC +V  
Sbjct: 139 ADVTAAVVQDYIHYLRTDANKHKGLAPSTIKIHLVLLSSFFEKMIELEMVQNNPCEAVRI 198

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI 221
           P  + +      + + Q+ +    +    + A   LL   +G+R  +        +    
Sbjct: 199 PPSQKKKPNYLKQNEYQKLEKVLEDKICDKRARAILLALKTGIRLGELAALRWTDIDLQS 258

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------- 262
            +I  + +   +  + P      +            +                       
Sbjct: 259 KTIHVRHSIQRVKAKSPGKNKTEIVFGQTKSVCSQRDIPMNDGIYTLLYSYQKVLKKSGI 318

Query: 263 --------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
                          ++   +  +F     KAG+   + H +R   ATI+A        L
Sbjct: 319 FTEESFVFSNRQGSYLDPRAYQNYFSKLLKKAGIRCVNFHALRHTFATIAASKNMQISTL 378

Query: 308 MATYGWKTVD-QAETYTKGADRI 329
               G  T     + Y    D  
Sbjct: 379 SRILGHSTPTITLQIYVHAVDEQ 401


>gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 424

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/387 (13%), Positives = 112/387 (28%), Gaps = 61/387 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + + +   GK    F    G R  +     S       +A+     + +   +      
Sbjct: 13  GLYQRKD--GKYCGRFYDRFGIRRYVYGKTISETKEKLNTAMY----EDKMEMNVADNTV 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS---GVES 125
           TL     ++ +   +  +A ++R+ +ES +   I    G    + I    IR     ++ 
Sbjct: 67  TLDEWYQKWLEIYKYKVIAPSTRVQYESIYKKHIQTDFGHMKLKDIQPLQIRGKLVNLDK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     +  +    +  +F  AV       NP  +++  + + +  R  + E+   F   
Sbjct: 127 KGFGYETQNKVRILLLDMFNKAVADNVAMKNPVRNIKVVRDEEKEPRVLSTEEQSAFFDT 186

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------------NIFS 223
             +G+     F   + +GLR  +      + L                            
Sbjct: 187 -CKGTFYDNLFNVAISTGLRPGELYALEAEDLDFEKKVIHITKSLSYQKFEGDTGKTFHM 245

Query: 224 IKTQKTGTIITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNAT 267
            KT+   +   V +       L                      +   F       +NA 
Sbjct: 246 GKTKTKSSYRDVPMNRRCEIALKKQLLQKRVVSGRNGAKTLKGFENLIFTTKYDTPLNAQ 305

Query: 268 QFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   K    +  +           S H  R   AT   +AG     +    G  T+  
Sbjct: 306 IYADAIKVIVEQINLMREELEQFETFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQM 365

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVD 344
               YT   +   L  +   ++ S ++
Sbjct: 366 TMDLYTHVLEN-HLSDE-MDKLDSRLE 390


>gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
 gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus
           R309803]
          Length = 370

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 112/370 (30%), Gaps = 42/370 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
            K+  + GK  Y    G           +         A    T     +++      + 
Sbjct: 5   VKKDKKTGKYFYIVDIGIDPLTGKRKQKKKRGFTTKKEAENALTMILSEVHTGTYVEPSK 64

Query: 71  --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
                 +  +  +    S+ + +    + Y + +II   G+    K+T+ H+++ V S +
Sbjct: 65  LLYGEYLESWFNTKK-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + +  +R   + A+  E +  N     + PK   E +  W ++++Q F  
Sbjct: 124 DDGLKRGTIEKIIKFIRNSLEHAIDLELITKNVATKTKLPKGDKEELTVWNEQEVQLFLK 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
              +G +  + F   L +G+R  +      + +      +   +T +             
Sbjct: 184 AAQDG-RYSMVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242

Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                + LP   +  L                     +          +N         A
Sbjct: 243 SSLRKILLPASTVAGLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
              KA V K   H +R   AT+    G     +    G   +    +TY+       +  
Sbjct: 303 LIRKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQE 360

Query: 334 KNSRRISSVV 343
               +I  ++
Sbjct: 361 DAVNKIEEIL 370


>gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 407

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 108/404 (26%), Gaps = 67/404 (16%)

Query: 2   TPSLRLPP------FVTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSA 50
            P  R P             T++GK  Y           G+ IR  +          +  
Sbjct: 5   QPKKRKPRSKANGEGTIYATTKNGKTYYKATLTVGTNEDGKLIRKSFCSYKK--QEVIDR 62

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGD 108
           +     +     +      TL      +        L   S   +E  +   I+    G 
Sbjct: 63  MAEYRTQSNSGLTSSNDKITLNQWFYTWLFEFRINELKDTSFERYEGIYRNYIKGSALGK 122

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPK 165
                I T HI+S   +      +         +++     AV+Q Y+  N C  V  PK
Sbjct: 123 RKLVDIRTAHIQSYYNALAEQGKTTNTIKVLNKTLKTCLNDAVKQGYIVRNYCSLVTMPK 182

Query: 166 R------KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                    +    +   + Q+      E ++ R+ F   L SGLR  +       ++  
Sbjct: 183 CEGAAGTDKDNDITFFTPEEQKTFIGSLEKNKNRMLFILALGSGLRLGELMALKWDNVDM 242

Query: 220 NIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMT------ 248
              ++      +                            + LP   +K L         
Sbjct: 243 VNNTLSVTHAISRLSKVGKDGSRTWSVLEHDPKTKSSTRIIPLPTKIIKELKKHKAEQDK 302

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                          F  +    ++    +  +      AG+ +K  H +R   AT   +
Sbjct: 303 LILKYGDLYQKNNLVFCTDLGGYLDTRNLTRSYARALANAGIEHKKFHSMRHTYATRLFE 362

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
                  + +  G   +      YT    +        ++++ +
Sbjct: 363 NDVPIKTVQSLMGHNDITTTMNIYTHVTPQQ--MTDEVQKLNKI 404


>gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 327

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI  +  +      +  S   + S  +  IRK  + + R ITT  +R+ +   + T  
Sbjct: 50  SELIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSG 108

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    
Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           EG +     + L  +G+R  +  +     +       I T K      V         L 
Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +                ++  +   I  +    +  + K   H  R+  AT++ D
Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G +++D    Y 
Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311


>gi|262201179|ref|YP_003272387.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084526|gb|ACY20494.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 463

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 102/381 (26%), Gaps = 73/381 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLI 75
           G   Y    G                     A+     +   + +      +  TL   +
Sbjct: 10  GSWYYVVDLGRDPATNKRRQERKRGFRTKREAVDALDERLSEVRTGIVAVDQRLTLAQYL 69

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG------------ 122
           + +  +     +   +  S+  + D  I+   G+   R +   H+               
Sbjct: 70  ASWLTAKEQAGIRATTLRSYRQHVDSYIVPTIGNVRLRDLRATHVEHMLSEIAKPPKKPA 129

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        +  +P++  +   ++R     A R+  V+ N    +E P+     ++
Sbjct: 130 KGVAIGKGKRRNPKALSPATQRRVHATLRSALTSAKRKHLVSFNAAADMELPRASRPKVK 189

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           PW   D+  F    ++  +    FE +  +GLR  ++       +      +   +    
Sbjct: 190 PWEASDLGAFLDHATKD-RLGAFFETIAMTGLRRGEALGIRWPDVDFEKARVTVNQQLVE 248

Query: 233 I--------------------------------------------TVELPDGFMKLLAMT 248
           +                                                 +   +     
Sbjct: 249 VDGTGIDCPFCGGEHKQFRFGPCKTASGEARIVDLDSGTLGVLMAQRLRQEQEREQWGDA 308

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               +  F   D   +     +  F A   +AG+ +   H +R   A++   AG     +
Sbjct: 309 YNDHQLVFAREDGSPIPPADVTAKFHALTDEAGLRRIRLHDLRHGQASLMLAAGVPIAVV 368

Query: 308 MATYGWKTVDQA-ETYTKGAD 327
               G  ++    +TY+   D
Sbjct: 369 SKRLGHSSISITSDTYSHLLD 389


>gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 352

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 113/348 (32%), Gaps = 21/348 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
             V +     G     +++G   +R ++    +   I  Y    T      +   + R K
Sbjct: 11  RGVYEREPGSGVWWICYKQGTVRKREKVGRKGD--AIELYRQRKTELRAGAKLAPNLRHK 68

Query: 68  PTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L  E    SA +         +       +  + G      +T + I S +   
Sbjct: 69  GVTFGVLAEEALAWSAEFH---PKDIKTVMGRMKMLTGEFGLVAASDLTPQMIDSWLTDY 125

Query: 127 KHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +        P++  ++   + ++++  +R   V  NP   V         +R    ++ +
Sbjct: 126 RTKGKNVLAPATKNRYRALISLVYRQGMRNGKVKANPARLVAARAENNARVRYLLPDEEK 185

Query: 181 QFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237
             ++    G    + A +  L SG+R S+      + +      I     K G+   + +
Sbjct: 186 ALRTAMENGRLCYIPALDVALNSGMRLSEQFSLTWEAIDFGRKEIVLDETKNGSSRHIPM 245

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                       +  +         +          WF+A A +AG+ + + H +R    
Sbjct: 246 NSTCEAAFRSLVVAGQKPADRVFSSRHGKAINTPRKWFEASAEEAGITDLTWHSLRHTFC 305

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +  A AG     +    G KT+  A  Y+  +    L      ++ +V
Sbjct: 306 SRLAMAGVDIRTIAQLAGHKTLAMAMRYSHLSPSHNL--SAIEKLVAV 351


>gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 28/274 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR--- 126
           + ++         +  +   + +            +       ++T   +R         
Sbjct: 4   LEQFEVWLQEQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGWLQAV 63

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
            +   ++  + L ++R   +W V  E +  +P   V+ P+ +T       K++  +    
Sbjct: 64  KRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQYRLLRE 123

Query: 185 ------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228
                             + R    FLL +GLR +++C   V+ +Q         ++  K
Sbjct: 124 AERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWVVVRGGK 183

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                 V L     + L      +     +        +           +AGV    H 
Sbjct: 184 GNKSRKVPLNVEVRRALNAWREERGDGEGSVFDL--TPSGAYRRLVEMGRRAGVEVHPHT 241

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +R   A    DAG   HE+ A  G  +++    Y
Sbjct: 242 LRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVY 275


>gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
 gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075]
          Length = 312

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 86/291 (29%), Gaps = 31/291 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR- 120
           L+     + K  A    L+  +  ++E    Q +           G  D   +    +R 
Sbjct: 12  LQAAREGWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLRG 71

Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +   +      +  + L  +R L ++  R+         ++  P++     +P T  D
Sbjct: 72  FLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTASD 131

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229
            +   S            ++       L  SGLR S++       L +   +    T K 
Sbjct: 132 AKHVVSVEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASEADTVLRVTGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V +    ++ +A                F       +N            +   +
Sbjct: 192 GKTRLVPVLPVALRAIAEYRRLCPHHLDPKGLLFRGARGGPLNPAIIQRDMAKLRSALNL 251

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
               + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 252 PDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYT-GVDTTRL 301


>gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 357

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 102/358 (28%), Gaps = 50/358 (13%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++                + +     K  Y +  +        ++  + K      
Sbjct: 2   TGKRKQKSKSGFRTKKEAQQAAATMITEIKKGMYFDDKQLS------VLDIWEK-LKPIR 54

Query: 87  LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            A     S+E         I+   G    + I    I+      K       +       
Sbjct: 55  KAELKITSYEKDMSLVRLYILPTFGYKKIKSIKPVMIQCYYAELKEKGLSNGTISNIHRC 114

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198
            R +FK AV  E +  N    V++P+ +   ++ W+ E+  +F  +  E   +  + F  
Sbjct: 115 FRCIFKHAVEWEIIHNNIMNKVKKPREEQGEMKTWSSEECNRFLHYLKEKNKKYYMFFLL 174

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------------- 230
            +Y+G+R  +      + +  +   I   K+                             
Sbjct: 175 AIYTGMRRGELLALTWKDIDFDNRRILVNKSIVKTEEGLFNAATKTKSSNRSISISSFVV 234

Query: 231 ---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                  V     F +           F  N     ++      + K    KAGV +   
Sbjct: 235 TELQSYYVYKKKEFFRWGIHLNEEAFIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           H +R   AT+   AG     +    G  ++    + Y+       +  + +    +V+
Sbjct: 295 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFENVI 350


>gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
 gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM
           16841]
          Length = 323

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 80/263 (30%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128
             +  +  + H    +  +   +    ++++    +    KITT+ +R  +   +     
Sbjct: 47  DFLDMFLTTKHLERCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTINNC 105

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +      S+   F W   ++Y+  +P   + + K           E ++        
Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI-LRDNCN 164

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             + R   +FLL +G+R  +  R  +  +  +                         L  
Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +    I      N    ++  +   +  +    K GV K   H  R+   T + + 
Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMDTRAIEK 284

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 285 GMLIEQVQKILGHEQIDTTLRYA 307


>gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357]
          Length = 374

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 69  RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++R +
Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALRAM 182

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 301

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 302 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355

Query: 323 TKGA 326
              A
Sbjct: 356 AHLA 359


>gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 341

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 101/323 (31%), Gaps = 18/323 (5%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISE 77
           GK   Y  K  G+R R           +      G     E       +P  TL      
Sbjct: 8   GKKWQYEFKYEGKRYRKKGFRTKREANS-----AGLDKLSELKQGIEYEPNLTLYDYFKT 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSAI 134
           + ++    ++   +  S+ S  + I     G    + ++  H +  +    + H+  S  
Sbjct: 63  WCETFKKSTVTPKTYKSYASAIEHINNHPIGKKKLKDLSRYHYQDFINEFSKHHSKESIR 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +    +R     AV +  +A NP   V      P +  +      K+     +   ++ +
Sbjct: 123 KLNGYIRTSLDDAVYEGLIAKNPTFKVSYRASKPNKSEDSKYINLKDYEILKQHLMTKDN 182

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAM 247
              L    ++ +G R S +     +++      I+  + +   +   V +    M  +  
Sbjct: 183 ASSLVLFIMICTGCRISGALNLKREYINQVKSEIYIDEHKTDSSPRYVSISQKDMNHIIK 242

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
           +              ++     +   K      G+   ++H +R    +     G + + 
Sbjct: 243 SIDQLPRTIDGTVFGELTNNAVNKRLKVYCNNLGIKEITSHALRHTHCSYLLAKGISIYY 302

Query: 307 LMATYGWKTVD-QAETYTKGADR 328
           +    G K +    E Y+   + 
Sbjct: 303 ISKRLGHKNISVTTEVYSHLLEE 325


>gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
 gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta
           thermophila DSM 6192]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 93/285 (32%), Gaps = 25/285 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH 128
           + L+  YR         +  +  ++    ++              ++ +     +   + 
Sbjct: 6   ERLLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVGTVSRRTCEEFIVDERG 65

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +  + ++++R  F++ V +     NP   ++ P+      R   +E+++     
Sbjct: 66  EGKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEA 125

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                 EG + R   E L   GLR S++C   +Q +  +   +K +              
Sbjct: 126 VDTAPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKE 185

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
               +         +         ++  F+N   ++++     I  K     +GV+   H
Sbjct: 186 AGHWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLH 245

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             R   AT     GA   E+    G   +   + YT   D  RL 
Sbjct: 246 TFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289


>gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 420

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-- 103
            Y SA+  +  + E      +         +    S    + + +  +++    + +   
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNS-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 --------RKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEY 152
                   +         I    +R+ +   K    + ++A  + + ++   K A   EY
Sbjct: 165 SQGQPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +             +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGERSSNDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 451

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/391 (11%), Positives = 100/391 (25%), Gaps = 80/391 (20%)

Query: 11  VTKERTRHGKII---YYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           + + + ++GK I   +          G  +R++                +     +   I
Sbjct: 10  IYQAKDKNGKPIPNCWRISVSFGSAGGDRQRVQCTVRGTKAEAKKKRDEIRRQHEEGLAI 69

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +       T+   I  + ++       +  +  ++ +    I    G     K+T   I 
Sbjct: 70  D---AGKVTVSEFIETWLEARQTTGKVSEFTIKNYHARLKTIEPYIGKKKLNKVTAAEIE 126

Query: 121 SGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 K   S    +  +    ++ +F+ A   + +  NPC  VE P       +  T+
Sbjct: 127 RAYAQLKAKKSLSDTTLNKLHILLKSVFEKACDYDLILRNPCNKVESPSVDKPDRKSLTQ 186

Query: 177 EDMQQFKSFWSEGSQPRLAFEFL---------------------------------LYSG 203
           E+              R+  E                                   L +G
Sbjct: 187 EEGATLLHKLDLEE-ARIIQEMDEKEERQVKKGNQFGRSSIRGLANLGFTIGTRIALATG 245

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKT---------------------------GTIITVE 236
           L   +      +++     +I   +T                              +  +
Sbjct: 246 LHRGEVFGLTWKNVNLRQNTITVAQTLTKEGEIKDPKTGAGRRTISIDESTAAHLRMWRK 305

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                +  LA+          +   + +N   F  W+++    AG      H +R   AT
Sbjct: 306 RQREELAKLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFEGLRFHELRHSQAT 365

Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTKG 325
           +    G     +    G          Y   
Sbjct: 366 LLLANGTDLKTVQDRMGHANGAITLNWYAHA 396


>gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 355

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 108/360 (30%), Gaps = 37/360 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRK 66
           + +++ +     Y      G + +              +A+  S  + E        P  
Sbjct: 6   LIRKKDKG--YQYIITYKVGNKWKTKSKQGFKKRQDAQTAMDKSLVELEKSVKNNMDPSM 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T K     Y +         N+ ++F++  +  +    + +  KI+   I+  V+S 
Sbjct: 64  SEITFKQFTDMYLEHMKIYRTT-NTILAFKTVLNHFV-TLSNKELTKISNIDIQHIVDSL 121

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQF 182
             T   PS+  +++  +  +FK A+    +    P  +++  K K +  +    E+ +  
Sbjct: 122 TLTGLNPSTIQEYIRKLNTIFKSAMDDYNIIDKLPTKNLKFNKSKQQVNKRALNENEENK 181

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                + ++  L     L  GLR  +        +     +I   K              
Sbjct: 182 LLEDFKSNKYYLVILLGLKCGLRLGEILGLTWSDIDEVNKTIIINKQWKQVNPTKYNFGE 241

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                    + +    +  L                +  N++             G + +
Sbjct: 242 LKSKNSNRIIPISKNTLDELKKHKKIVNINNRIFKFKNTNSSCI--CLNRLLKLKGYDIT 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT     G     +    G       +TY+   D         ++ + ++++
Sbjct: 300 VHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVND------DMMKKATKIIEN 353


>gi|330815343|ref|YP_004359048.1| phage integrase [Burkholderia gladioli BSR3]
 gi|327367736|gb|AEA59092.1| phage integrase [Burkholderia gladioli BSR3]
          Length = 347

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 107/346 (30%), Gaps = 25/346 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  Y++    +  T+   
Sbjct: 6   KTTSGTWKAVIRKTGWP-TTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLTVSAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y K          ++ S       +    G +    ++ + +    + R     S  
Sbjct: 65  LKRYMKEVSATK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGKSNN 123

Query: 135 QF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A+++  +    NP  +V +P       R  ++++ Q+  +     
Sbjct: 124 TVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRDRRLSRDEQQRLFAAADAH 183

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245
           S P L +   L   +G+R S+        +  +   +  +  K G+   V L     ++L
Sbjct: 184 SNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKNGSSRMVPLTREAAEVL 243

Query: 246 A--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                            F       K     F   +       G+ +   H +R  + + 
Sbjct: 244 RAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRDLGMADLHFHDLRHEAVSR 303

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             +AG +  E+ +  G K++   + YT             +R+ S+
Sbjct: 304 LVEAGLSDQEVASISGHKSMQMLKRYTHL-----RAEDLVQRLDSL 344


>gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 324

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 76/295 (25%), Gaps = 49/295 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGVESRKHTPS 131
              +  +  ++     + +   G                   +         ++ +  P 
Sbjct: 18  RRASPRTTEAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFEHDQALRPRPG 77

Query: 132 -----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176
                      +  + ++++R  F++  R   V       +  P+ K    RP +     
Sbjct: 78  HRVTTRDRAARTRARRVSALRSFFRYLARHHGVDNPAPALLAAPRVKKTLPRPLSHEDAL 137

Query: 177 ---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------FSI 224
              + + +         +    F  L   GLR S++    V  L   +            
Sbjct: 138 EVPQGVGEIAHTPMARMRDGALFLLLYGCGLRISEALSLDVADLDRAMALGGGADEGVLR 197

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKAT 278
              K G    V L     + L                                  +    
Sbjct: 198 IMGKGGKERMVPLLPVVGRALREWRRHHPAPVAGAPLFPGVRGGRLQAAVAQRAMRTWRH 257

Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AG+    + H +R   AT   + GA    +    G  ++   + YT  AD  RL
Sbjct: 258 MAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LADESRL 311


>gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 282

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +                      +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKILWDDDTVPAMKRE----RNLPVVLSRDEINAIIDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR S+        +   N    ++  K        L    + LL 
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                             +         + +FK  A  AG+  + S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
 gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287]
          Length = 307

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 73/267 (27%), Gaps = 29/267 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKH---TPSSAI 134
             + ++  +++       +           D    +   + I+  +        +  S  
Sbjct: 15  KYSDHTVEAYKHDLRSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSIN 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188
           + L++++  + +  + + + I+P        +  +  +         K           +
Sbjct: 75  RKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFD 134

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247
             + R   E L  +G+R S+     V  +           K      + +       L  
Sbjct: 135 EVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKE 194

Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFSATI 296
                  +  E         K     +S                  + S H +R   A+ 
Sbjct: 195 YLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASH 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
             D GA  + +    G  ++   + YT
Sbjct: 255 LLDNGADLYTVKELLGHSSLASTQVYT 281


>gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 307

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 73/267 (27%), Gaps = 29/267 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKH---TPSSAI 134
             + ++  +++       +           D    +   + I+  +        +  S  
Sbjct: 15  KYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSIN 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188
           + L++++  + +  + + + I+P        +  +  +         K           +
Sbjct: 75  RKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFD 134

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM 247
             + R   E L  +G+R S+     V  +           K      + +       L  
Sbjct: 135 EVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKE 194

Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAKATK------AGVNKSAHGVRKFSATI 296
                  +  E         K     +S                  + S H +R   A+ 
Sbjct: 195 YLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASH 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
             D GA  + +    G  ++   + YT
Sbjct: 255 LLDNGADLYTVKELLGHSSLASTQVYT 281


>gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 308

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 89/305 (29%), Gaps = 40/305 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH- 128
           +  Y           N+   +E+   + I+   D +        IT   ++   +     
Sbjct: 1   MENYIVWLKEQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEV 60

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    + S+    +  ++  FK+         N    V++PK + +    W     
Sbjct: 61  AKTNSGKQLSVSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRIS 120

Query: 180 QQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +     +            +  +       +L +GLR S+  +  +  +++   S++  K
Sbjct: 121 KNRLMRYLEDVELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGK 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKA 277
            G    + +    +  +      ++      + Q            ++       FK   
Sbjct: 181 GGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIR 240

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              G+   + H +R          G     +    G   ++  + Y     + +   +  
Sbjct: 241 KHTGLEELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAV 298

Query: 337 RRISS 341
            +++S
Sbjct: 299 EKLAS 303


>gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
 gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1272]
 gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           [Bacillus cereus AH1273]
          Length = 379

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 100/358 (27%), Gaps = 50/358 (13%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++                + +     K  Y +  +        ++  + K      
Sbjct: 24  TGKRKQKSKGGFRTKKEAQNAAANMITEIEKGMYFDDKQLS------VLDIWGK-LKPIR 76

Query: 87  LAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
            A     S+E         I+   G    + I    I+S     K       +       
Sbjct: 77  KAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNGTISNIHRC 136

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEF 198
            R +FK AV  E +  N    V++P+ +   ++ W+ ++  +F  +  E   +  + F  
Sbjct: 137 FRCIFKHAVEWEILHDNIMNKVKKPREEQGEMKTWSSKECNRFLHYLKEKNKKYYIFFLL 196

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI-------------------------------FSIKTQ 227
            +Y+G+R  +      + +  +                                 S    
Sbjct: 197 AIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEEGLFKAATKTKSSNRSISISSFVV 256

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                        F +           F  N     ++      + K    KAGV +   
Sbjct: 257 TELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKKAGVPRIRI 316

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           H +R   AT+   AG     +    G  ++    + Y+       +  + +    +V+
Sbjct: 317 HDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQN--MQQQAAENFENVI 372


>gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 417

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 110/337 (32%), Gaps = 26/337 (7%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +  P        Y   +      R  +   R K  TL+    EY +     +   + + S
Sbjct: 74  ITLPDAVQKAQLYRQMIQEGLDPRRTLTERRIK--TLEKFCHEYFEDFIDQNHK-HPKKS 130

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMRVLF 144
                  I+   G    ++I ++ +   V+           R+ + S+A Q L+ +  LF
Sbjct: 131 RHMLKRWILPVFGHIPLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKLF 190

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS 202
           + A+ Q  V  NPC  V RPK      R  + ++  +F              A   L   
Sbjct: 191 QCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAVL 250

Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           GLR S+        +   +N   IK  K G    V L      LL      ++   +   
Sbjct: 251 GLRPSEVLGLAWCDVHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLYDARKKRAVWVF 310

Query: 261 KQKM-----NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
             +      +    S  F+     A +   + + +R+  AT    +G     +      K
Sbjct: 311 PSRGKSSTGHLQSVSKTFERICNMAELPEFNLYDLRRSHATFLLQSGVDLFTIKEALHHK 370

Query: 315 TVDQAETYTKGADRIRLGIK---NSRRISSVVDSDDP 348
           T+     Y + +    +        R + ++    +P
Sbjct: 371 TLASTMVYARVSSESMVNANELAAQRALEAISGQFEP 407


>gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4]
 gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4]
          Length = 288

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 97/289 (33%), Gaps = 24/289 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHI---RSGV 123
              +S +  S     L+ +S  ++     + +          FD R +T   +   R  +
Sbjct: 2   SDWLSGFEVSCLRRGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYL 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R   P++    L +++  F+W   +  +  NP   V++        R  T+ ++    
Sbjct: 62  RGRGLKPATVNFNLEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGLLA 121

Query: 184 SFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
                    + R  F  LL++GLR S++    ++ +          ++  K G    V L
Sbjct: 122 RAVQRYGTVKDRALFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGKGGKYREVPL 181

Query: 238 PDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                ++L       P     +     K  M         K     AGV  + H +R   
Sbjct: 182 NVTVRRVLKEYLAELPPQGGGWLFPGKKGPMTPRAVQKRLKFFGRIAGVEVTPHKLRHTF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRIS 340
                DAG +  ++    G   +D    YT+    D  R       ++S
Sbjct: 242 CKWLIDAGESLDKVALLAGHARLDTTAVYTRPGRTDLER----AVEKLS 286


>gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
 gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748]
          Length = 357

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 110/346 (31%), Gaps = 41/346 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+     +  +G+R       +   I    + +        Y         T + 
Sbjct: 3   KKRADGRYQVS-KLINGKRKYFYGTTKKAAIAERDAYVESLAQCANY-----DNTITTER 56

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPS 131
               + +     +++ N+  S++      I+   G     +++  ++R+ ++S  H +  
Sbjct: 57  WCEYWIR-LKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSHLSAR 115

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    LT +R + K AV  E ++ N    V++PK++ +       ++  +      +  +
Sbjct: 116 TISYTLTVLRAILKQAVMDEIISKNVATLVKKPKQERKREMVTLSKEEVETFLEQIDDVE 175

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------------- 235
               F+    +GLR S+        +     ++   +T   I                  
Sbjct: 176 WHALFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDEVTTISKTTKNSSSRRS 235

Query: 236 --------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                                +L A         F        +  + S+  K  AT  G
Sbjct: 236 ISLDDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKFGNPRDPAKVSLKCKKFATAIG 295

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
             + + H  R   AT+  +AG     +    G  +  Q   TY+  
Sbjct: 296 RPDFTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQTMDTYSHV 341


>gi|307710046|ref|ZP_07646491.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307619231|gb|EFN98362.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 381

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 113/367 (30%), Gaps = 48/367 (13%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K  T+ G+  Y F+         G  +R             A    L     +  + N
Sbjct: 2   IKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121
           +   +  T   +   +  S    ++   +  + +   D +I     D   ++I+  + + 
Sbjct: 62  NEDFQNPTFAEVAELWLDSYK-STVKPTTYQNTKKKLDVMIDSYFTDMKIQQISVAYCQK 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDM 179
                 +       + + +  +FK+A   + +  NP   + +PK +        +TK+++
Sbjct: 121 VAVKLSNRYILYANYYSVISRIFKYATSIDIIKSNPLDKIIKPKNRPLKGKENYYTKQEL 180

Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----------------NI 221
            +F   +    +P     F  L +SGLR  ++       +                    
Sbjct: 181 TEFLKVYKANCKPVNYTFFHLLAFSGLRTGEAIGLMWSDVDFENKLLSISRTAVVIGKKQ 240

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKA 275
                +   +   + L D  + +L +    +   +        +            W  A
Sbjct: 241 TVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQAGVPYKHDLNYIFTNNDGGWLLA 300

Query: 276 KATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              K  +             S HG R   A++  +AG TA  +    G   V    + YT
Sbjct: 301 ATMKVKLLRFFRKHNNLKKISPHGFRHTHASLLFEAGITAKIISDRLGHNNVQTTLDMYT 360

Query: 324 KGADRIR 330
              D  R
Sbjct: 361 HINDNQR 367


>gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 336

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 93/338 (27%), Gaps = 46/338 (13%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G+ +   R     G+RIR           AY   +     ++ ++   +     L
Sbjct: 4   RKIDSGEWLCDLRPTGVKGKRIR-KKFATKGEALAYEKYIASEMEEKPWLGEKQDNRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125
             LI ++        L   +    +        I    GD    +IT+       E    
Sbjct: 62  SELIEQW------HDLYGRTLSDADRMMSKLKGICAGMGDPIAAQITSADFSQYREGRLK 115

Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174
                         P +      ++  +F    +   +   NP   +   K   + +   
Sbjct: 116 GEIPDVNGRLMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLAGIPTFKVDEKMVSFL 175

Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             E+++    + SE S     +  +  L +G R S++       +     + K  K G +
Sbjct: 176 YPEEIKSLLQYLSESSSDSVLIITKICLATGARWSEAENLEGAQVTPYRITYKNTKNGRV 235

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHG 288
            ++ +       +        T                  F+    KAG+        H 
Sbjct: 236 RSIPISKELYDEIPKKRGRLFTPC-------------RKTFERVVAKAGIELPDGQCTHV 282

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   A+     G     L    G   +     Y   A
Sbjct: 283 LRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320


>gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 329

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 57/310 (18%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--------------------- 108
                  + +      + + ++  ++    + +                           
Sbjct: 2   FIEAAYRFLEYLRIIKNASEHTVRNYAIDLNALKEYLEHDLLPEEEDEKLPPKIRYNEPF 61

Query: 109 ----------FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                          IT K IR  +      +    + ++ L+S+R  FK+ + Q++++ 
Sbjct: 62  SERLKTYDAALVLDTITRKTIRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISA 121

Query: 156 NPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           NP   +E P+ + +     + +       Q  +    G + R+  E    SGLR S+   
Sbjct: 122 NPTEELESPRVEKKVPNSLSYDQVQTLFDQPDTKTFLGFRDRVIMELFYSSGLRVSELVA 181

Query: 212 -AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
               +    N+      K      V +       +       E     +           
Sbjct: 182 LDRQEFDPKNLLIKLKGKGKKERIVPITKNAADWINAYLTHPERCVEIDGHFAQQDSNAI 241

Query: 263 -------KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313
                  ++        F    T +G+    + H +R   AT   + G     +    G 
Sbjct: 242 FLNRLGTRLTTRSVDRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGH 301

Query: 314 KTVDQAETYT 323
            ++     YT
Sbjct: 302 ISLATTTIYT 311


>gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1]
 gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1]
          Length = 408

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 100/385 (25%), Gaps = 63/385 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + ++    G     +    G+R  L   + S+       A           N       
Sbjct: 13  GIRQKVD--GIYSARYVDKFGKRKELYDRNLSSLKRKLNEAKYN----DAIGNVILDDSL 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL      + +   +  +  N+R+ ++  F   I    G    + IT  HIR+ ++    
Sbjct: 67  TLSVWFDNWLEIYKYNVIRDNTRVYYKQVFKKHIEPLLGHKRLKDITQLHIRALLKELDK 126

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +  +    +  ++  A+   Y   NP   +  PK      R ++ E+   F   
Sbjct: 127 QGLQFQTQNKVRVMLLDMYNKAILDNYAVRNPAKGIRLPKHNKRNKRVFSVEEQIDFFD- 185

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNIFS 223
             +G+     F   + +GLR  + C      +                            
Sbjct: 186 CCKGTFYDNLFTVAVNTGLRQGELCALTWDDIDLEKKEINVEKTLLYQKLEGDTGKTFHI 245

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------MNATQFSIWFKA 275
              +   +   V +       L    I +         +               +     
Sbjct: 246 NPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAKPEKGFENLLFTTKYATPICDQ 305

Query: 276 KATKAGVNK------------------SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               A + K                  + H  R   AT   +AG +   +    G  T+ 
Sbjct: 306 ILIDA-IKKIVNEINSVRSEIEQFEMFTPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQ 364

Query: 318 QAE-TYTKGADRIRLGIKNSRRISS 341
                YT          K   R+S 
Sbjct: 365 MTMDLYTSVF--KHCEEKAISRLSE 387


>gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
 gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753]
          Length = 414

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 98/372 (26%), Gaps = 58/372 (15%)

Query: 20  KIIYY----FRKGHGRR------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           K  YY    +     +R        LP         A +  +  +      I        
Sbjct: 21  KGYYYAVLSYYDSKNKRHVKYISTGLPEKGNKRKAEAELVKIRNAFEPPAEIG-ELCSNM 79

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFD--YRKITTKHIRSGVESR 126
                +  + +      +   +  S+ES   Q I     +     + +  +HI+     +
Sbjct: 80  LFADYLLGWLEIVKVR-VKPTTFGSYESMVKQTIEPYFRNKPITLKDLEARHIQQFYSEK 138

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P+S I +   +    K+A++ + VA N  + V+RPK+           ++Q    
Sbjct: 139 LKTVKPNSVIHYHAVIHQALKYAMKTDLVAQNVAMKVDRPKKNDFQPVFLDAAELQH-LF 197

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------------- 221
              +G++  L      + GLR  +        +                           
Sbjct: 198 DVVKGTKLELPVLVAAFYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVNVGGKTQVIEQ 257

Query: 222 -------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNAT 267
                          G            + L     G    +  +         ++M   
Sbjct: 258 ESAKTKSSMRTLPLVGRFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFVDELGERMKTD 317

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
             +  F A   + G+ K   H +R   A++    G    ++    G          Y   
Sbjct: 318 YLTSQFPAFIQRHGMKKMRFHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHL 377

Query: 326 ADRIRL-GIKNS 336
               +L   +  
Sbjct: 378 DYSSKLSSAQAM 389


>gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2]
          Length = 337

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 28/330 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TT 70
            ++ T++GK +      +G+R+R  +  +   +  Y  A   +T   + +          
Sbjct: 3   VRKDTKNGKWLAEV-YVNGKRLRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPA 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L + + E+    H  +L+     +  +    +    GD    +   +      + R    
Sbjct: 62  LSFYVQEWFD-LHGKTLSDG--EARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      ++  +    +R +F              L   R  ++ E    +  E  
Sbjct: 119 FSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                   + S+     L     L +G R S++       +     +    K+    TV 
Sbjct: 179 IYRLLVECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +      +L                       F         +    +  H +R   A+ 
Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G  T++    Y   A
Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319


>gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 408

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 109/324 (33%), Gaps = 20/324 (6%)

Query: 24  YFRKGHGRRIRLPYP------HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y   G  R I +                 Y   L+     ++     +++  TL  L   
Sbjct: 57  YLWHGRKRAIAIGRFPDVDLNTAREIATEYKRLLSQGIDPKQLKED-KRQELTLYELFQL 115

Query: 78  -YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
            Y   A     +   +   + + D +    G     +I  +  ++   S   +  P++  
Sbjct: 116 HYLPYAKHHKRS--WQNDEQRFRDHLQPPMGSRLLSEINLEQGQALQTSLMSQCKPATNN 173

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +  T ++ +  W+VR  Y+  +P + ++      +  R   K ++++             
Sbjct: 174 RITTLLKAILTWSVRMGYLEQHPLVYLKTLPENNQRTRFLDKAEIRRLFMAADADENRYA 233

Query: 195 AFEFLLY--SGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPI 250
                L   +GLR  +   A  +H+        I   K G    + +    M++L  TP+
Sbjct: 234 GQYVKLLLLTGLRKDELRLAKWEHIDKVHQTLFIPHTKNGKSRILHMNHMAMQVLQDTPV 293

Query: 251 GKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                ++   ++        +  F     +A +      H  R   A +   +G T +++
Sbjct: 294 IAGNAYLFPGQKPGQPLNNVTKPFNRMLKRAQIEGQVCIHTCRHSVAALIVSSGGTLYDV 353

Query: 308 MATYGWKTVDQAETYTK-GADRIR 330
            A  G  +   ++ Y    A R+R
Sbjct: 354 QAQLGHSSSQSSQRYAHLHASRLR 377


>gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 294

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 84/274 (30%), Gaps = 24/274 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            + +      +      + A ++  ++     ++          ++  + ++        
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ S+      ++   +++ +++E+  +          R        ++++     S  
Sbjct: 62  TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
            +  + R     +   GLR S+  R     +  +     ++  K      V LP    ++
Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176

Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L    +      +   +              M+       FKA    +G+ K  S H +R
Sbjct: 177 LRDYWVIHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   +AG     +    G  +      Y+ 
Sbjct: 237 HSYATHLVEAGVNLRVIQEILGHSSPATTAIYSH 270


>gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028]
          Length = 392

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 114/379 (30%), Gaps = 46/379 (12%)

Query: 2   TPSLRLPPFVTKERTR-HGKIIYYFRKGHGRR----------IRLPYPHESTFIPAYMSA 50
               +  P V   +   +G+  YY R   G R                 E+    A  + 
Sbjct: 6   REKSKKYPGVYWRKNPENGEKTYYIRYRLGGRGSKEIEEPVGKSTSAMTEAKASQARAAR 65

Query: 51  LTGSTPKREYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           +TG T       +  K          T++ +  EY  +    + A        SY ++++
Sbjct: 66  MTGQTLPNTERRTQEKAAQEAITGRWTVQKIWDEYDDAHKDRACA----KPDASYANRLL 121

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYV 153
            + G+    +I T  +     +   T S          +    L  ++ + +WA    ++
Sbjct: 122 PELGEKTPSEIVTLDLERLRRNLAKTKSPRTRKTLSAQTQKHVLALLKRMLRWAADMGHI 181

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCR 211
                L    P    E     T++ +  +     E S    A  F   L +G+R +    
Sbjct: 182 DPPVHLKFRMPTVDNEKTEFMTEDQLSAYLKALDEESNQHCAAFFRIALLTGIRRTALLN 241

Query: 212 AGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                +      +                       +    +   + +I   +       
Sbjct: 242 VMWSDVDLENGFLTLRGATAKNEKTQTIPLSPGAVEVLKGIVRPNSPYIWPGQNGGARED 301

Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +    KAG+       HG+R   A+  A +GA+ +E+        +   + Y   
Sbjct: 302 MRRMGRRLRDKAGLPADFRPVHGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHL 361

Query: 326 ADRIRLGIKNSRRISSVVD 344
           +D+        RR +S+ D
Sbjct: 362 SDQ------ALRRAASLAD 374


>gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC
           43243]
          Length = 282

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 85/269 (31%), Gaps = 18/269 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +                      +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKIVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR S+        +   N    ++  K        L    + LL 
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                             +         + +FK  A  AG+  + S+H  R   A+   +
Sbjct: 177 EYWFKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
           +G     + +  G       + Y   +++
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265


>gi|312899212|ref|ZP_07758550.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
 gi|311293646|gb|EFQ72202.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0470]
          Length = 384

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 117/385 (30%), Gaps = 56/385 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 4   IKQYQKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 61  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  +  +FK+        Q  V        +      + I+ +T
Sbjct: 121 VNTWHSKGSSKQYPLFINYINQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 300

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E+    G   +    
Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360

Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344
           +TYT   +  +   K + ++S  + 
Sbjct: 361 DTYTHLTNDGK--EKTTEKLSKYIG 383


>gi|240146968|ref|ZP_04745569.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257200880|gb|EEU99164.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 112/358 (31%), Gaps = 36/358 (10%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++ T+     ++     G + +      ST   A          +++ +NS R     L
Sbjct: 4   KEKDTKKWTAQWFETNAKGEKKKRRKRGFSTKKEAL------EYERQKKLNSSRSMDMKL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              +  Y +      L   +  +     +  II   G+    +I+   I       +   
Sbjct: 58  SEFMEVYFEDKQ-NELKERTMKNKRYMMEQHIIPYFGNQMMSEISASQIIQWQNEMQTKG 116

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFW 186
            S          +  LF  A R   +  NPC  V+R     +  +  WT E+ QQF    
Sbjct: 117 FSESYLRMIQNQLTSLFTHASRIYDLHTNPCKKVKRMGNSDSRSLDFWTTEEYQQFIQTI 176

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
             G++  L FE L ++G R  +        +      I   KT                 
Sbjct: 177 EPGTRYYLIFEILFWTGCRIGELLALTPADINFERNQISITKTYYRTERKDVITEPKTKQ 236

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
              T+E+P+   + +     G      N     +         K    KAGV K   H +
Sbjct: 237 SVRTIEIPEFLKQEIKQFIEGHYGMPENERLFPIVQEAVQHKMKQNMVKAGVKKIRVHDL 296

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R        + G     +    G K +     TY        L     RRI+ ++D++
Sbjct: 297 RHSHVAYLINKGIEPILIKERLGHKDIRITLNTYGH------LYPNQQRRIADLLDNE 348


>gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31]
 gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 31/285 (10%)

Query: 70  TLKWLISEYRKSA-HWGSLAVNSRISF----ESYFDQIIRKSGD----FDYRKITTKHIR 120
           T +  +S + +   H    +  +  ++     +Y + + R  G+     D   IT   +R
Sbjct: 4   TARAALSAWLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAAELR 63

Query: 121 SGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           + +  R+      +P S  Q L+S+R   ++   +          V  P+ K    RP +
Sbjct: 64  AYLAFRREGENGLSPRSLSQSLSSIRAFHRYLDHRLDTPNAAIGLVRGPRIKVGAPRPVS 123

Query: 176 KEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           ++      +  S  S        +       L   GLR S+      +          T 
Sbjct: 124 EDQAHGLIAEISLDSDREDWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAESLRITG 183

Query: 228 KTGTIIT-------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           K G            E  D ++  L       +  F       ++        +   ++ 
Sbjct: 184 KGGKTRIVPVLDIVRERIDAYLAALPFALEPDDPLFRAKRGGPLSPRHVQATMQHLRSRL 243

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           G+    + H +R   AT    AGA    +    G  ++   + YT
Sbjct: 244 GLSDRATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYT 288


>gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
 gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B]
          Length = 327

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 L  +    +   S ++K T+ +  +  +  +      +  S   ++S  + ++ 
Sbjct: 23  EKLQEVLQYTLASYDVTESKQQKKTSEQNFVELFLSAKRIEGCSEKSLKYYKSTIEAMLD 82

Query: 105 KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +    D ++I T  IR       E +K +  +       +   F W   ++Y+  +P   
Sbjct: 83  EL-KKDVKRIVTDDIREYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 141

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + + K  T     ++ E ++  +   +E  +     + L  +G+R  +        +  N
Sbjct: 142 IHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFN 200

Query: 221 IF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273
               I   K      V         L      +            +           +  
Sbjct: 201 ERECIVFGKGSKERVVYFDARTKIHLQNYLKSRTDDNPALFVSLKSPHERLKIGGVEVRL 260

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    K G+     H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 261 REYGKKLGLQKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 362

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 111/350 (31%), Gaps = 27/350 (7%)

Query: 11  VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +  +   +G   Y F K        +I      ++  +   + A      +     + + 
Sbjct: 21  LYLDIYVNGTRSYEFLKLYLQPETSKIAKEKNKQTLLLADAIKAKRIVEIQTGEFRALKN 80

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              TL  LI              +    + S   ++  K  D +  KIT K +    +  
Sbjct: 81  NKVTLMSLIESRLA------RKDSVIDKYLSKILRVYLKDKDIELSKITPKWVERFFDFL 134

Query: 127 KH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +H             SSA      +      AV+ + +  NPC  V   K +       T
Sbjct: 135 EHEFKSFIKKTPLKASSARLLGNRLSGALAEAVKMDIIKDNPCQKVRAIKAQESQRTYLT 194

Query: 176 KEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +E++++  S   E G +   AF F   +GLR SD  +     +  +   I   +  T   
Sbjct: 195 QEELKRLASTPYERGERVTKAFLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGL 254

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
             L         +         +  D  + +         +   +AG+NK  S H  R  
Sbjct: 255 EYLDLSEGATKILKERKNNGGLVFYDLPRESGNA-GKLLNSWRVRAGINKKISFHTARHT 313

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            AT+        + +    G K +   + Y K  D+ +       +I  +
Sbjct: 314 FATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKKK--QDAVNKIPQL 361


>gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514]
 gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514]
          Length = 337

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 91/306 (29%), Gaps = 40/306 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
           +  I  +          ++ ++ ++     +              +  +     R  +  
Sbjct: 29  EKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRF 88

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 + ++      ++R  +K+ +R   V+ +P  +V  PK +    +  T + M + 
Sbjct: 89  LGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVEL 148

Query: 183 KSFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                +                    +     E +   GLR S+ C    Q +  N   +
Sbjct: 149 LGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLV 208

Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFK 274
           + +        V + +  +  +       E          +         +        K
Sbjct: 209 RVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLK 268

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
                AG++   + H +R   AT   DAGA    +    G   +   + YT  + +R++ 
Sbjct: 269 KYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKR 328

Query: 332 GIKNSR 337
              ++ 
Sbjct: 329 AYDSAH 334


>gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
 gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4]
          Length = 365

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 35/312 (11%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122
           L+  +  +R++ A    +A N+  ++E    Q +                 +  + +R+ 
Sbjct: 23  LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175
           + +R+       S ++ L  +R   ++  R+ + ++    +V  PK +    RP      
Sbjct: 83  MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228
                 E            ++       L  SGLR S++    A    +        T K
Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281
            G +  V +     + +A                        ++         A     G
Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNS 336
           +    + H +R   AT           +    G  ++   + YTK  D  RL        
Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLMSAFEDAH 321

Query: 337 RRISSVVDSDDP 348
            R   +  S+ P
Sbjct: 322 PRARRLPPSELP 333


>gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574]
          Length = 407

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 97/362 (26%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MVGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT   +   VE  +       A       + + ++A+  E +  +PC  V     +  
Sbjct: 167 DLITKDMMEYFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L            ++     +        K    +AG+N
Sbjct: 287 EQNKTKGHSANSGVVIPLNNGLLSLIGEAPDDLDSSIFNLPSYESCCKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
 gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501]
          Length = 310

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 39/296 (13%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------------DFDYRKIT---- 115
           L+ ++ +        A ++  ++E      +R                    ++I     
Sbjct: 6   LMEDFLQWIEVEKGYADSTIKAYEYDILLFLRWYDGGEIIQGENKEDLKIKLKRIELENV 65

Query: 116 -----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                 K +    +   ++ ++  + + S++  + +  +   +  N    +  PK++   
Sbjct: 66  TLEELRKFVVYLAQELDYSNTTRCRKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPTT 125

Query: 171 IRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                ++++ Q      E S+     +     LLY+G+R S+     +  +      ++ 
Sbjct: 126 EIYLKQKEINQLFVAIDEISRNIIRDKSILAVLLYTGIRVSECINLNLSDIDLESRILRI 185

Query: 227 QKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKA 277
            K        + +    M  +      ++   I  +         ++N       FK   
Sbjct: 186 VKGKGGKSRMIGINKELMPYIKDYLQKRQQVLIEGNPLFLSERGNRLNKRTLQYHFKRWV 245

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AG+    + H  R    +     GA+  E+    G K +   + Y    D+ RL
Sbjct: 246 EEAGLPDEVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHN-DQKRL 300


>gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 282

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +                      +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR S+        +   N    ++  K        L    + LL 
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                             +         + +FK  A  AG+  + S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
 gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1]
          Length = 308

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKH 128
           + E+  +       +  +  ++E    Q          G      IT  H+R  +     
Sbjct: 1   MDEFLTALAAVKGYSPATVAAYEDDLAQFEAFLRGRGLGLDAPEAITRDHVRGFLAELHR 60

Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------TK 176
             ++     + L+++R  FK+ ++++ +A +P   ++ PK +  G R           T 
Sbjct: 61  RRAAKSSMGRKLSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALVTP 120

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                     +   +     E L  SGLR S++    +  L  +    +           
Sbjct: 121 PPAAPAADGSAAACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKERLA 180

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV--NK 284
            L D   + L      +        +          +++  Q +    A A  AG+  + 
Sbjct: 181 PLSDASRERLREYLRRRGELGPGPMELALFLGNRGGRLDRRQAARIVDALAKGAGLARHA 240

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R   AT   ++GA    +    G   +     YT
Sbjct: 241 HPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYT 279


>gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3]
 gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron]
 gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23]
 gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3]
          Length = 279

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 85/262 (32%), Gaps = 9/262 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           ++  + K       A N+  S++ Y    ++    +    +I    I + +  +      
Sbjct: 6   ILETFEKRLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKI 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           ++ +   +    K               +   +  ++  + ++KE+++          + 
Sbjct: 66  SVSYQKGLVGAIKKMYELILDKKIQLDYLYPKRSFSKLPKFFSKEEVRNILDNTQ-NLKH 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPI 250
           +     +   GLR S+     ++ ++++   I+  ++       V LPD  +  L     
Sbjct: 125 KAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQ 184

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
             +      + +K    +     +  K    KA V    S H  R   AT    +G    
Sbjct: 185 AFKPKEYLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRHSYATHLIQSGIDIR 244

Query: 306 ELMATYGWKTVDQAETYTKGAD 327
            +    G + +     YT   D
Sbjct: 245 IVKELLGHENIKTTMIYTHITD 266


>gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           ATCC 824]
 gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum
           EA 2018]
          Length = 299

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 105/293 (35%), Gaps = 31/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG 122
           ++  +  Y K+      +  +R  + +      R   +         D+  I  + I+  
Sbjct: 3   VEERLEMYEKNLLVK--SEGTRKQYLNDLKVWFRYMKNKKRQITKDEDFVNIDYREIKKF 60

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTK 176
           +          ++  + + S+++ F++  +++ V  NP   +++   PK      +  + 
Sbjct: 61  INYLIKNGRAATTIRRKIISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIPKRLPKSLSI 120

Query: 177 EDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E+ ++  +  +  +  + +      L +G+R S+     V ++      I  ++      
Sbjct: 121 EECKRLINSVNSRNTIRDKCIIIIFLSTGMRLSELISLNVDNILEEEIRIIGKEN-KERV 179

Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
           V L D   K++ +    +         F++    ++         +     AG+      
Sbjct: 180 VYLTDQAKKIVKLYIKQRPKNLKTKALFLSERNGRIARGTVQNAIRNAMYNAGIKGDNDV 239

Query: 286 -AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
             H +R   AT+   +G     +L    G + V     YT  + ++++  ++ 
Sbjct: 240 LVHILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQLKNAVEA 292


>gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
 gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein
           [Streptococcus oralis Uo5]
          Length = 321

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 90/293 (30%), Gaps = 14/293 (4%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F+          + +R  ++  +K+  +   L+  +  +      +  +   ++   + +
Sbjct: 15  FLNNEQLLALRESLERHLVDGKKKQKHSNNNLLQLFITAKQVEGCSAKTIRYYQRTIENL 74

Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                     ++TT  +R    +    +  + ++       +   F W  ++EY+  NP 
Sbjct: 75  FHHI-KESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPI 133

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +++ K +      +T E ++  +    E  +     + L  +G+R  +  +     + 
Sbjct: 134 RRIKKIKTEQTVKETYTDEHLEIMRD-NCENLRDLAMIDLLASTGMRVGELVQLNRSDID 192

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK------QKMNATQFSI 271
                            V         L      ++              Q++      I
Sbjct: 193 FENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLLGKAQRLGIAGVEI 252

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +    K G+     H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 253 RLRKLGQKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305


>gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA]
          Length = 285

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 97/274 (35%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           + + ++ R +A+  +L  ++  ++ +     + ++   D   +TT  +   +  +K    
Sbjct: 8   EEIFNQIRSAANKRNLKDSTIHAYCTSVAHFLNRTA-KDIDALTTDDVDIFLTEKKLSGI 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + + +R  +K  +++ +   +            +     TK ++         
Sbjct: 67  SPETYNHYHSGIRFFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKAEISAILDAT-P 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +   GLR S+        +   N    I+  K+ +     L D  +++L 
Sbjct: 122 NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILT 181

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                                  +      +F+  A +AG+  + S H +R   A+   +
Sbjct: 182 EYWFQCGRPRGILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFE 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + A  G +     E Y   +++  LGI
Sbjct: 242 SGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 275


>gi|27383115|ref|NP_774644.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27356289|dbj|BAC53269.1| blr8004 [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 110/359 (30%), Gaps = 41/359 (11%)

Query: 12  TKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K+R   G    Y + +  G+ ++   P    FI +Y +A  G                T
Sbjct: 11  VKKRLADGSTKTYRYHRATGKLLQ-GEPGSPEFIESYGAAARGQK------RPQTASSDT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              L+ +Y+ S  +  LA  ++  +      +  + G      +    +       +   
Sbjct: 64  FAALVVKYKASEVFKLLADRTQSEYARLLKAVESEFGTLPSSALNDPDVLGDFLEYQDAV 123

Query: 131 SSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + A         L +   +  WA  ++ +  N     +R          W  E +  F  
Sbjct: 124 AKASGAREADNRLAATSAMLTWAKDRKNIRFNHLRGFKRLHYADRSEILWLPEHVLAFMD 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELP 238
                 QP L      ++ LR SD         ++    ++  K+           +   
Sbjct: 184 KAEPELQPALILA--AHTALRESDLLGLKWTAYRDGCLVVRISKSRRNRGNGRLVDIPCT 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----------SAH- 287
               ++L   P   E        ++     FS  +      AG++K          S H 
Sbjct: 242 KSLRQMLDKMPRTSEYILTTRTNRRFKIRYFSRLWHETMVAAGIDKIKLEGVEEPVSLHF 301

Query: 288 -GVRKFSATISADAGATAHELMATYGWKTVD----QAETYTKGADRIRLGIKNSRRISS 341
             +R  + T+ ++AG T  E+    G  ++       E Y   A    L  K   +  S
Sbjct: 302 NDLRGTAITLLSEAGCTPQEIATITGH-SLKYVNHILEKY--LARTKGLARKAIEKFES 357


>gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18]
 gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18]
          Length = 340

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 80/310 (25%), Gaps = 10/310 (3%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
                  +     A          +           T L   I +  ++  W +     +
Sbjct: 25  KSTGKFTKKEAKHAEAMERQKMMEQASLTPQEIAARTLLSEAIEQVYQT-RWKNNKDG-K 82

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVR 149
            S      ++I   GD     I    +R  +      K   ++  ++L  ++ + ++  +
Sbjct: 83  QSRTRAL-RLIELIGDVQVGAINEDVVRKIIFKLEATKVKSATVNRYLEVLKTILRYKRQ 141

Query: 150 QEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +              R   K E  +           S      Q     E LL +G R S
Sbjct: 142 EWDFIHLKKQPKGRIRVLSKPEEDKAIRLLRETDHCSRRHFYPQVADLVEILLDTGCRLS 201

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           +        +  +   I            +P  +     +    K             A 
Sbjct: 202 EVLNLPYDDVNFDTNLISIWINKGDRPRSIPMTYRVRRILQERQKTNKKKPFSVTIYQAG 261

Query: 268 QFSIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +   W + +   +       H +R   AT   + G   + +    G  ++   E Y   A
Sbjct: 262 KAWAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLA 321

Query: 327 DRIRLGIKNS 336
               L    +
Sbjct: 322 PDK-LAHAAA 330


>gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 326

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 20/278 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVE 124
              L+S + +     +L   +   + +   ++ +  G  +     +T    +  I   + 
Sbjct: 19  WSELVSLFLQDCRSRNLTNETIRRYRNGLKKLQQHLGSQNLKLNDLTDLLLSHRIIPSML 78

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180
                  +    L  ++  FK+         N    +   K KT     +T         
Sbjct: 79  DEGLALRTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHLQRLFV 138

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q       G +  +    LL +G+R  +     V ++  +  +++  +        +P  
Sbjct: 139 QPDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVPIQ 198

Query: 241 FMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVR 290
            +    +     E         ++  D          +        A   GV  S H  R
Sbjct: 199 HVAAFELKQYMFERGTLETDRLWVTLDNHPFYEAGIRVMISRYCIAANIQGVQCSCHTFR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A      G     L +  G + ++  E Y +   R
Sbjct: 259 HTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSR 296


>gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 378

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 100/365 (27%), Gaps = 26/365 (7%)

Query: 1   MTPSLRLPPF-VTKERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSA------LT 52
           + P  +L    +T ER+++G  +Y       G RI      ES  +    +        T
Sbjct: 16  LAPGKKLAEHGITVERSQNGDAVYRINIMVDGERIHRVVGRESDGVTRQHAEDMIATLRT 75

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
            +  +R  +   RK     K     Y K          +    E   +  +    G    
Sbjct: 76  RAREERLDLPKGRKIAIPFKEAAESYIKRLKEEG--GKTIERKERTLELYLTPALGTKPL 133

Query: 112 RKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            KIT+  +      R    +   +  + +  +  L+  AV   +VA  P +   +     
Sbjct: 134 SKITSSDLAVYRAQRLKAGAKDATINREMAVVSHLYSKAVDWGWVAAKPKIIRAKEGDGR 193

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                  +       +               L + +R S+      +HL  +   I    
Sbjct: 194 IAYLTPDQCARIIAAARNDLSPHIHPFCVIALSTSMRMSEVLSIKPEHLDFDKRRIFIPS 253

Query: 229 TGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                  +             L   P   E  F N+  +           +     AG+N
Sbjct: 254 AKAGQREQPMTKGLSDFLKAQLESLPDDAEWLFPNSASKSGRVMTIRKAHRRVVKAAGLN 313

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                  H  R  + T    AG     +    G KT+     Y   A+   +       +
Sbjct: 314 PDEVLR-HTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAH-ANGEHI-DAAMDNL 370

Query: 340 SSVVD 344
              + 
Sbjct: 371 EQRIA 375


>gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 319

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 39/302 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRK 127
             EY         + ++R ++      +     +       R +T   +RS      +  
Sbjct: 27  FDEYLALE--RGRSEHTRRAYLGDVRALFDFLAERRPGTGLRGLTLPVLRSWLAAQATAG 84

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              S+  +  ++++    WAVR+  +  +P   ++ PK +        ++  ++      
Sbjct: 85  AARSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAK 144

Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
            G         + RL  E L  +G+R S+ C   +  +      ++   K     TV   
Sbjct: 145 SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYG 204

Query: 239 DGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKA--KATKAGVNKSA 286
           D     L           +               +++  Q          A     +   
Sbjct: 205 DPAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGP 264

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           HG+R  +AT   + GA    +    G  ++   + YT              R+ +V D  
Sbjct: 265 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVT---------VARLRAVHDQA 315

Query: 347 DP 348
            P
Sbjct: 316 HP 317


>gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 297

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 24/284 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVES 125
            + E+ +      +LA +++ ++                         +    +R  +  
Sbjct: 4   WLDEFSRYLSVERNLASHTQTAYLRDVQAFCDFICGEHREQLKTLLPAVEKHTLRRWMAQ 63

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               +   +  + + S+R  + +  RQ +V  NP L V  P+ +         + M    
Sbjct: 64  LLKNNKKVTVARKVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDYMYHLL 123

Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238
               + +    + R AFE L  SGLR  +     V  L  +   ++   K G    V + 
Sbjct: 124 DAPGDSTLQSLRDRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGKGGKQRIVPVG 183

Query: 239 DGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
              ++ L      +           N    +++A       K K  + G+    + H +R
Sbjct: 184 SKALQALMAYLERRGVTERDEPLLVNRQGTRLSARTVQRNLKKKLLQLGLPTTATPHSLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              AT   D GA    +    G +++   + YT      R+  +
Sbjct: 244 HSFATHLLDEGADLRAIQEMLGHQSLSTTQKYT-QVSTDRMMKE 286


>gi|307691640|ref|ZP_07633877.1| hypothetical protein RbacD_01570 [Ruminococcaceae bacterium D16]
          Length = 357

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 109/358 (30%), Gaps = 41/358 (11%)

Query: 12  TKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +E+T   + +Y +    G  ++ +           A+         + +   +      
Sbjct: 5   KEEKTNTWRAVYRYTDWNGERKQTQKRGFKTKREAQAW--------EREQLNKTSADLDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T K  +  Y        L  N+  + +     +++   G      IT + I +       
Sbjct: 57  TFKSFVDLYTADMKTR-LKENTWATKDHIIRTKLLPYFGRLKMCNITAQQIITWQNEMLN 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178
                   ++P         +  +F  AVR   +  NPC       K+K   +  WTKE 
Sbjct: 116 HKDENGKPYSPVYLKTVHNQLSAIFNHAVRYYNLRENPCKKAGSMGKKKKREMMFWTKEQ 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
             +F     +      AFE L + G+R  +              ++   K+         
Sbjct: 176 YLKFAEVMMDKPLSFYAFEMLYWCGIREGELLALTPADFDFEKRTVTINKSYQRLNGQDL 235

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                       + +P    + +            ++    +  +         A +AGV
Sbjct: 236 ITTPKTEKSNRVITMPQFLAEEIQDYIKMLYGIGPDDRMFTITKSYLQREMDRGAKEAGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +   H +R  + ++  D G +A  +    G +++D    Y       +   + + ++
Sbjct: 296 PRIRIHDIRHSAVSLLIDMGFSATAIADRVGHESIDITYNYAHLFPSKQ--AEMADKL 351


>gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein
           [Flavobacterium johnsoniae UW101]
          Length = 419

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 86/282 (30%), Gaps = 16/282 (5%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP------- 130
            +      + + RI++E    + ++    G  ++ +I ++            P       
Sbjct: 138 AAKRHNRSSKSIRINWER-LAEFLKSFSNGSLNFSQIDSRMAEDFKLFLLGAPQGGGKKG 196

Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++A  +    +   K A    Y+ ++    ++    +       T E++    S  
Sbjct: 197 TISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESRREYLTIEELNALASTD 256

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E    + A  F   +GLR SD  +   + +       K   T             +   
Sbjct: 257 CEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQKKTKGVEYMPISQQAL 316

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                         +   + +  S   K     AG+ K  + H  R   AT+   +G   
Sbjct: 317 QLCGEPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDI 376

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           + +    G   V   + Y K  D  +     + ++ S+   +
Sbjct: 377 YTVSKMLGHTNVKTTQIYAKVVDEKKNKASEAIQLVSLKKKE 418


>gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 410

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 24/296 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFES------YFDQIIR-KSGDFDY--RKITTKHI 119
           TT      +Y +          +  ++        +F+  ++ K G  D    ++T   I
Sbjct: 107 TTFLDFYGKYLEDIKAQVGKGKTLATYHKYSAAGKHFENFLKLKYGRKDIMPSELTHVII 166

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  +      P+SA + L   + +  +A +   +  +P         ++      T
Sbjct: 167 HDFDIYLRTVVSLKPNSATKTLKFFKTVVIFAQKCGVLTHDPFAQHRF-HLESVDRGFLT 225

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            +++ +         +    R  F F  + GL   D       ++               
Sbjct: 226 DDEITRIMEKEFSTPRLESVRDIFIFSCFCGLAYIDVANLTQDNIVTLDGKKWIMTRRQK 285

Query: 233 ITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
             VE     + + L +    K           ++  + + + K  A   G+ K    H  
Sbjct: 286 THVESNILLLDIPLMIINKYKGKTKDGKLLPILSNQKMNAYLKEIADLCGIKKRLTYHLA 345

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVD 344
           R   AT+    G     +    G   +   + Y +  ++    I++    +S  +D
Sbjct: 346 RHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKK---IEHDMMNLSEKLD 398


>gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
 gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236]
          Length = 263

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 17/245 (6%)

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + G   ++ +    +RS V   K      SS    L+++R    W V Q  +  NP   
Sbjct: 5   EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           V  P+      +    +++ +            + R   E +  +GLR S+      +H+
Sbjct: 65  VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124

Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQF 269
              +       K      + +    +K LA             +  F+ N  ++++A   
Sbjct: 125 DLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLELRELFEPQDDAIFLANTGKRISARNV 184

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              F     K GV  +   H +R   AT   ++      +    G   +   + YT   D
Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH-LD 243

Query: 328 RIRLG 332
              L 
Sbjct: 244 FQHLA 248


>gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72]
 gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72]
          Length = 303

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 20/277 (7%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
              Y          A  +  ++     ++ R         +    IR  V        + 
Sbjct: 16  CEAYLAYLGDQRRAAPLTLENYRRDLHRLERLGDGRALMTLGAADIRRFVARLHGEGLSG 75

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  + L+  R L++W +R+  +  NP   +  PK      R  + +  Q      +E +
Sbjct: 76  RSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKSPRLLPRALSPDQAQALLDPPAEAA 135

Query: 191 ---QPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              +    FE    SGLR S+      G              K G   +V +       L
Sbjct: 136 LEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEGMVTVLGKRGKTRSVPVGAHAWAAL 195

Query: 246 AMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295
                 +       +         ++M+ +        +A     GV+   H +R   A+
Sbjct: 196 KAWDTVRAAIAPAAEPALFVTRSGRRMSPSAIRDRLARRARSVGLGVHVHPHMLRHSFAS 255

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               +      +    G  ++   + YT   D   L 
Sbjct: 256 HLLQSSGDLRAVQELLGHSSIRSTQVYTH-LDFQHLA 291


>gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4]
 gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169]
 gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1]
          Length = 330

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127
           +       + + ++  ++++   Q           G          +T     + +E  K
Sbjct: 30  WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
             P SA   L+++R+ +++ ++Q  +A+NP    +      +          +    +  
Sbjct: 89  IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229
            +  +      + +  FE +  SGLR S+     +  +  +I  ++              
Sbjct: 149 PEDTAKACLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              +         + L      K  F       +++     +  K  AT AG+  +   H
Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   A+    +      +    G + +   + YT  
Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306


>gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 321

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 83/317 (26%), Gaps = 41/317 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             L+ +Y +       LA  +   +     ++  ++       R +   HIR  V     
Sbjct: 6   SALVEKYLEFVRVEKRLAARTVELYSLDLGRLSEQATRAGVTMRDVRNHHIRRWVAQMHS 65

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----KEDMQ 180
              S       L+  R  + W  R+  V+ NP   V  PK      +        +    
Sbjct: 66  AGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQFADF 125

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--------AGVQHLQNNIFSIKTQKTGTI 232
           +        ++     E L  SGLR  +           A          +    K    
Sbjct: 126 ESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHVLGKGSKR 185

Query: 233 ITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMNATQFSIWF 273
            +V +    M+ L                             F   +  ++ A       
Sbjct: 186 RSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTAQSVWQRL 245

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           K ++  AG+      H +R   A+    +      +    G   +   + YT+  D   L
Sbjct: 246 KRRSQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTR-LDFQHL 304

Query: 332 GIKNSRRISSVVDSDDP 348
                          +P
Sbjct: 305 AKAYDAAHPRAKLKREP 321


>gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355]
          Length = 220

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 19/215 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLA 195
           MR LF++  R++    +P   +  PK      +  ++  + +             + +  
Sbjct: 1   MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254
            E L  +GLR S+     +  +      ++          V L +  +  L         
Sbjct: 61  LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 120

Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301
           +          F +N  Q+M    F    K  A  AG++    S H +R   AT   + G
Sbjct: 121 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 180

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           A    +    G   +   + YT  A +R+RL  + 
Sbjct: 181 ADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQ 215


>gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 309

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVAVLEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 239 ------VRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|320352610|ref|YP_004193949.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121112|gb|ADW16658.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 387

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 92/328 (28%), Gaps = 16/328 (4%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGST-----PKREYINS 63
           + +      K    ++K  G+  R+ +    E T   A   A                  
Sbjct: 36  LVQITESGRKTFQLYKKHMGKPIRVTIGTFPELTVEQARKKAREIKVSLTNGENPNDKLK 95

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +++  T   L   Y +          +    E+YF + +   G      IT   I +  
Sbjct: 96  QQRQEMTFADLFEIYLERHAKPRKK--TWREDETYFKRHLASFGKKRLSTITKGDIAAIH 153

Query: 124 ESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            S  K  P+ A + L  +  +    +              +   +    R  + +++ +F
Sbjct: 154 SSIGKDRPTHANRVLALVSSIIGRGIEYGLYESLNPCRGIKKFSEQARDRFLSGDELARF 213

Query: 183 KSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    S  R  F   L +G R ++        L       +  +T       +P  
Sbjct: 214 FQALEQEPNSTARDFFLVALLTGARRANVLSMRWSDLDLKGQIWRIAETKNGTPQNVPLV 273

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNK-SAHGVRKFSATI 296
              L  +    K T                     ++     AG+     H +R+   + 
Sbjct: 274 GPVLEILQDRRKATSSFFVFPGPGKTGHLVEPKKAWQRICQAAGIKGARIHDLRRTMGSW 333

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  GA+   +  +   K+      Y +
Sbjct: 334 QAKTGASLPIIGKSLNHKSASTTSIYAR 361


>gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
 gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1]
          Length = 372

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 13/273 (4%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVE 124
            +L  L   +  +    + +  +   +  +  Q +      D + I    IR    +  +
Sbjct: 91  DSLGKLKDMFLATLIVENKSNRTIEQYNLHLTQFVNYFTGKDAKDIDATGIRSFLYAYKK 150

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R  +  S     +++   F W V +EY+  +P   +++ K   +  + +T ++M++ + 
Sbjct: 151 NRGISNLSLNNKRSAISSFFSWLVDEEYIDKDPTRKIKKIKVTKKKKKAFTADEMERMRI 210

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
             +   + R   E L  +G R S+     +  +      ++         TV + D  M 
Sbjct: 211 ACT-DIRDRALIEMLACTGCRVSELSNISLNDVDFLRKKVRIVGKGDKERTVFISDTAMI 269

Query: 244 LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
            L      ++   I           ++         +       V    H  R+   T  
Sbjct: 270 YLNRYLETRQDNNIALFVSKRFPYDRLRKDGIERVVRDLGRMCNVYAHPHKFRRTLCTNL 329

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
              G     +    G   ++     Y   +DR 
Sbjct: 330 IMRGMPLQNVAILMGHADINMTANVYYDASDRA 362


>gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
 gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483]
          Length = 420

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 18/302 (5%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQII 103
            Y SA+  +  + E      +         +    S    + + +  +++       ++ 
Sbjct: 106 EYDSAILYTDKENEIAAQNERSEQDFIKYFNG-IISTRHPNSSDSIIVNWRRVGELLKMY 164

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +     ++ I+ K +          P           ++A  + + ++   K A   EY
Sbjct: 165 SQGEPIPFKAISVKLLEDIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEY 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + ++    V+      +     T  ++Q       +    + AF F + +GLR SD    
Sbjct: 225 LTVDISAKVKGITNIEKPRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTL 284

Query: 213 GVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             + +Q                   +      + L +  I  +       +   +A+  S
Sbjct: 285 KWKQIQQTSKGTWQAVVIQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTDASWIS 344

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K     +G+ K  + H  R   A++  + G   + + +  G   V   + YT   + 
Sbjct: 345 RPLKVWIEASGIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNE 404

Query: 329 IR 330
            +
Sbjct: 405 QK 406


>gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012]
 gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012]
 gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74]
          Length = 357

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLI 65

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R       TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLVDTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium
           EB000_37G09]
          Length = 302

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 23/280 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
           LI+ +  +      ++ N+   +++    +        +  +T   IR  V+        
Sbjct: 9   LITHFLSALAAERGVSENTLFGYKNDLMALHDSMA-VSFVVMTADDIRQSVQKFYIEGLA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + L+++R    W V       NP L ++ PK      +   + D+    +  S+ 
Sbjct: 68  ARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEADVSSLITACSKL 127

Query: 190 SQPRLAFEF-----LLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             P           +  +GLR S+           +    +   K G    V L    + 
Sbjct: 128 EPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERMVPLTAIAIA 187

Query: 244 LLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                   ++    +           Q+M   +FS+  K  A  A ++    SAH +R  
Sbjct: 188 TARRWRDARDADGPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDERKVSAHVLRHS 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            AT   + GA    L    G   +   + YT+   + RL 
Sbjct: 248 FATHLLNRGADLRSLQMLLGHADIATTQIYTRT-RQDRLA 286


>gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54]
 gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
 gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54]
 gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 88/281 (31%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT 129
           LIS Y         L+ ++  ++++   Q    + D       ++T  +I          
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNSNYDNVESYIEELTQSNI---------K 55

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183
            ++  + +  ++V + +   Q  +  NP   +    + +    +    + ++        
Sbjct: 56  TNTLRRKIACIKVFYNYLKYQHIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFSYLEQ 115

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                       +  +  L    LL +G+R S+ C   ++ +   N    I  +     I
Sbjct: 116 RVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175

Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     LL               F   +  + ++     +  K    + G++K+  
Sbjct: 176 LFLGDQTTFNLLETYINKNGKESNDFLFPGKHSPKPLSEQSVRLILKRIVEQNGLSKTIT 235

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H  R   AT+  D       +    G  ++   + YT  +
Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii]
          Length = 305

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 98/292 (33%), Gaps = 29/292 (9%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRK--- 127
           + ++          +  +  ++ +  + +   + D       +I    +RS +   +   
Sbjct: 11  LEDFCVHLRADLRRSPRTVTAYRTDLESLFDHAADNGVTRLAEIDVSALRSWLADGRGAA 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P++  +   S RV F+WA  +  + ++P   ++  K      R    +  ++      
Sbjct: 71  EAPATLQRHWASARVFFRWACAEGLIGVDPAARLKAAKVPRRLPRTLGVDQARRLLDDAV 130

Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                    +G++     E L  SG+R  + C   +  L     +++   K     TV L
Sbjct: 131 ASASTDDSPQGARDAAILEVLYGSGIRVGELCGLDLSSLDRARDTLRVLGKGSKERTVPL 190

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKAT-KAGVN-KSA 286
            D   + +      +  +   +  Q         +++              + G      
Sbjct: 191 GDPGWRAIDGWLSRRSEWQTASSGQALFLGARGARIDPRVVRRMVHQHLRSEPGFPDLGP 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           HG+R   AT   + GA    +    G +++   + YT  + +R+R     + 
Sbjct: 251 HGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAH 302


>gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 391

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/373 (12%), Positives = 111/373 (29%), Gaps = 56/373 (15%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K++ ++GK  Y+ R  H    +    +  T           +      I + +    T
Sbjct: 5   IYKKKLKNGKEYYFHRLRHKNLRKPKDIYAKTVKELEEKIKLITHDLDYNIQNNKDCFET 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---S 125
                S++    H+  L  ++++ +E+ +   I+  +  D   ++IT+K I++       
Sbjct: 65  F---FSDWLFDVHFMGLKPSTQMRYETIYRNHIKNSELSDIKIKEITSKDIQTYYNNKIK 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  + +        +    ++A    ++  N   ++  PK   +         +      
Sbjct: 122 RGCSVTLVKSIHKIITPCIRYAYNNNFIIKNFTSALILPKETEKDKLNKKSSVIPFTLEE 181

Query: 186 W------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233
                    G++  + F   L SGLR  +      + +      I   K  +++      
Sbjct: 182 QKKFISVIRGNKFEMIFLTALNSGLREGELLALTWKDINFKDKYINVNKNLSVVTEISKE 241

Query: 234 ----------------------------------TVELPDGFMKLLAMTPIGKETFFINN 259
                                               +        +          F + 
Sbjct: 242 NGRGGSTLEVQTPKTKKGIRKVSIPSFLATALKQYKKQQIKNRLKMNQFYNDNNLVFCDE 301

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +N  +    FK       +     H +R   AT   + G +A  + +  G   +  
Sbjct: 302 LGNYLNRDKIVYRFKKVLEDNKMKEIKFHDLRHTYATRLFELGESAKTVQSFLGHSDISV 361

Query: 319 A-ETYTKGADRIR 330
             +TYT   D ++
Sbjct: 362 TLDTYTHVLDSMK 374


>gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
 gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702]
          Length = 391

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 98/373 (26%), Gaps = 43/373 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M         + ++R   G+                  Y    T     +  L       
Sbjct: 1   MAKRRPSGDGMVRKRE-DGRWEGRIVVGHKKNGDPIHRYVLARTQKELIVK-LHDCIEMY 58

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
              +        L   +  +       ++  ++  S+++    QI    GD     +TT+
Sbjct: 59  RDADLTEDSNMMLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQ 118

Query: 118 HIRSGVESRKHTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++    + K                          +      AVR   +  NP +    
Sbjct: 119 ELQKFYNTVKKKGRVKADKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTI 178

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           PK      +    E +++F     +  +    F   L +GLR  + C    +        
Sbjct: 179 PKNNYPPKQILNDEQLERFMQRIRQDERWYDFFYTELTTGLRRGEICGLKWEDFDAENGK 238

Query: 224 IKTQKTGTIIT-----------------VELPDGFMKLLAMTPIG----KETFFINNDKQ 262
           +K +++                      + LP    +LL               I   ++
Sbjct: 239 LKVRRSVAKRKGGGLNIGETKTETGTRTIVLPPSTAELLRKRKETAVSEWIFPNIYEPEK 298

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            M+        K    +A +     H +R   AT +   G  A  L    G        +
Sbjct: 299 PMHPDYAYHRLKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLD 358

Query: 321 TYTKG-ADRIRLG 332
           TYT    D  R  
Sbjct: 359 TYTHVTTDMQRNA 371


>gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 310

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 16/300 (5%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
              + +         L       E I    ++  T   LI  +           N++ ++
Sbjct: 5   RSENSAELRKIRSVILRSPESGDEVIGPVVQQADTDDQLIELWL-----HGRPKNTQTAY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYV 153
                + +        R +    +++  +    +   SS  + LT+++ LF +  R  Y+
Sbjct: 60  GREIVRFMDWV-KKPLRTVKLGDVQAFADELSDSLKESSLHRALTAVKSLFAFGFRLGYL 118

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           + +   +++ P  + E       E             + R     L   G R S+ C   
Sbjct: 119 SFDVGRAMKLPTFRDELADRILGETDVLRIISLEPQPRNRALLLTLYAGGFRVSELCSLK 178

Query: 214 VQHLQNNI---FSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNAT 267
             HLQ            K G   TV +P    +    L  +   +   F +     ++ +
Sbjct: 179 WCHLQERDSAGQITVFGKGGKTRTVLMPQSVWEAVMKLRDSDSSEAPVFRSRKNGHLDES 238

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K  A +AG++K  S H  R   A+ + D     H + AT G  ++     Y   
Sbjct: 239 AVWRIVKKAAERAGIDKNVSCHWFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLHA 298


>gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 281

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 15/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           L+  +         + N+  S+  +  +++    +     +T   I++   +  + +  S
Sbjct: 13  LLDLWL-----HGRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + +++ L  +  +   + +N  L V     K         E   Q         + 
Sbjct: 68  QRTAIFAIKSLLSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIASETDPRN 127

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKLL 245
           R+    L   GLR S+ C    + L+             K  KT  ++      G +  L
Sbjct: 128 RVMLRLLYSGGLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPGIWGGLIQL 187

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                    F        ++ +      KA A +AG+    S H +R   A+ S D GA 
Sbjct: 188 GPGQPDDPVFHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHWLRHAHASHSLDRGAP 247

Query: 304 AHELMATYGWKTVDQAETYTKG 325
            H +  T G  ++     Y   
Sbjct: 248 IHLVQQTLGHSSLATITRYLHA 269


>gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
 gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis
           29755]
          Length = 261

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 13/227 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
               T + I S    +  +  S    L ++R    + V+Q  + +NP L ++ PK     
Sbjct: 13  LDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHL 72

Query: 171 IRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +    E + Q  +         +     E +  SGLR S+     +  +      ++  
Sbjct: 73  PKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLL 132

Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            K      V +    +  +                 F+N    +++     +  K    K
Sbjct: 133 GKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQK 192

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             ++     H +R   AT   +A      +    G  ++   + YT 
Sbjct: 193 QALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239


>gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
 gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991]
          Length = 403

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/389 (12%), Positives = 101/389 (25%), Gaps = 72/389 (18%)

Query: 1   MTPSLR-LPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M    + +P + T   TR G + Y  R     G+++ L              A       
Sbjct: 1   MAKKKKNIPQYGT--VTRKGVLYYRTRILDADGKQVSLYGTTCEELYDKEQEARRQVAEI 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
             +   P     T+     ++        ++  +   + S     II+  GD    ++T 
Sbjct: 59  IFHREHP-----TVAEYCEKWLL-MQSAKVSPATLKGYASNMKNYIIKPLGDMYMEEVTA 112

Query: 117 KHIRSGVESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             IR  +    +   S    +   ++ +F  A R + +  NPC  +     K    +   
Sbjct: 113 DDIRLALIPLSNKSESLHNTVNMLLKCIFYSAERSQLLEYNPCEGISAKGGKPTQKKDSL 172

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +   +      +G  P L     LY+GLR  ++       +  +  +          + 
Sbjct: 173 TDQQVEVLLETVKGLPPYLFTMIGLYAGLRREEALALQWDCVFLDAPTPYISVRRAWRSE 232

Query: 236 ELPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFK 274
                    L      ++                           + Q ++ +QF   ++
Sbjct: 233 HNRPVISTTLKTKAARRDIPIPKCLVNCLREAKAASKSEYVIADSEGQPLSYSQFKRVWQ 292

Query: 275 AKATK-------------------------------------AGVNKSAHGVRKFSATIS 297
               +                                        + + H +R    T  
Sbjct: 293 YIVVRSTKERTYYKYVNGQSIKYTVQPSLGGHQKNNPNIVYSLDFDVTPHLLRHTYITNL 352

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKG 325
             AG     +    G +        Y + 
Sbjct: 353 LYAGVDPKTVQYLAGHENSKTTMDIYARV 381


>gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC
           2396]
 gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 86/273 (31%), Gaps = 23/273 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT 129
                Y  S      +V++  S+     ++      +G   ++ + T  +R  +      
Sbjct: 8   EAFIAYLHSE--RRYSVHTVSSYNRDLRRVVAYCDANGVASWKDLHTPQLRQALSEFHRR 65

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+++R  +++ +R+  V  NP   V  PK           +  +Q     
Sbjct: 66  GLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLLDSP 125

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
            E      + +   E    SG+R S+     + HL  +    +   K G    V +    
Sbjct: 126 VEEEELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKERLVPVGGQA 185

Query: 242 MKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            K L      +           F++    +++        +  A K G +     H  R 
Sbjct: 186 RKALRDWLQARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSGRLYPHLFRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   ++      +    G   +   + YT 
Sbjct: 246 SCASHLLESSGDLRAVQELLGHADISTTQIYTH 278


>gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99]
 gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99]
          Length = 389

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 96/347 (27%), Gaps = 34/347 (9%)

Query: 8   PPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           P  + K     G+  Y  R          G               A+ S           
Sbjct: 6   PRGIRKRLNAAGEPRYQVRYLIRDPDAPSGWVETSATFPTLREAKAFKSERDNEAALGAR 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              PR   T L  + +++  S     ++  +   +  +++ +I  + G     +IT   +
Sbjct: 66  RFDPRLGRTPLSRIWTQFSDSKKPA-VSPKTWSGYNQHWELRIKPRFGHVPVDEITRADV 124

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R+ V+     P + +  L  +R +   A +   +  NP L V   +        +     
Sbjct: 125 RAFVDGLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYLTAQE 184

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227
            +  +              L Y+GLR S+     V+ +               +      
Sbjct: 185 VRMLATACGDQGD--VVTILAYTGLRWSEPVGLRVKDIDLTARRLYVRRAAPEVEGHIVI 242

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------SIWFKAKAT 278
                          +++     G+ T    +     +                +     
Sbjct: 243 GPPKTRAGIRTVPLPQVVVDIFKGRITGQAPDQPAVTSTNGAMLRSNNWRRHTHWNKALK 302

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
              +   + H +R   A+++  +GA    +  T G  T       Y+
Sbjct: 303 STDLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1]
 gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 386

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49
           MT      + P  + +++  +G +  Y   +R G  ++  L                  +
Sbjct: 1   MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60

Query: 50  ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99
             T    K + +   +    +           +  YRK          +  +  ++ S  
Sbjct: 61  LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESDGNWGNWRSCL 120

Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139
             +     +   ++ IT + I    +          ++  P          S    ++  
Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R     A  +  + +NP   +E  K         T E+++Q  +        + AF 
Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F   +GLR SD  +     +Q      +          +               +     
Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                       S+  +  +  A +NK  + H  R   A +  D GA  + +    G K 
Sbjct: 301 PVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360

Query: 316 VDQAETYTKGADRIR 330
           +   + Y K  D+ +
Sbjct: 361 LATTQIYAKVLDKNK 375


>gi|322436114|ref|YP_004218326.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163841|gb|ADW69546.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 381

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 81/327 (24%), Gaps = 30/327 (9%)

Query: 22  IYYFRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            YY     G R R            T   A  +                    T   L  
Sbjct: 27  RYYEDAATGGRTRKALFVGTTDKYKTEAQARKAVEAILLKLNAEKPMHHLGTVTFGGLCD 86

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            Y         +  +R S+ S  +  I  + G++    +    +    +    +P +   
Sbjct: 87  RYIAEELPERYS--TRKSYLSNINLHIKPRWGEYLIEAVRPMAVEGWFKEMDKSPKTKAH 144

Query: 136 FLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
             + M V+F    +W +  E       + V+   ++ +     T +      +   E  +
Sbjct: 145 IRSVMHVIFECAARWELFNERRNPIEMVRVKDSTKRRKRPMILTNDTFDAVLAGLPEPFR 204

Query: 192 PRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243
             +     L       +GL+  D      Q L                         +  
Sbjct: 205 TMVVVAQCLGLRVSEITGLQWGDLDTERRQLLVQRSIVNGRVDDVKTEYSHDHVPIHESL 264

Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFS--IWFKAKATKAGVNKS-----AHGVRKFS 293
              LLA +    ET         +++  +      K     AG+         H  R   
Sbjct: 265 LEVLLAWSEQCPETEEGWMFPNPLSSKPYYSTEIQKRYLKPAGIKLGLGPIGWHTFRHTY 324

Query: 294 ATISADAGATAHELMATYGWKTVDQAE 320
            +   + GA            ++    
Sbjct: 325 RSWLDETGAPMKVQQELMRHASIQTTM 351


>gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC
           14018]
 gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
 gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019]
          Length = 357

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 80/323 (24%), Gaps = 65/323 (20%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
             L   Y         L   +  ++     Q +   G  D   +    T  +R  +    
Sbjct: 23  SDLSDRYIDYLRSNKGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMYWLN 82

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             H  SS  + + ++R  F W      ++ NP   +  PK   E      +   ++    
Sbjct: 83  KNHARSSLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKLLDC 142

Query: 186 WSEGSQPRL---------------------------------------------AFEFLL 200
             + S+                                                  E L 
Sbjct: 143 AEDRSEDYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILELLY 202

Query: 201 YSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            +G+R  +            N     T K      V       K          +     
Sbjct: 203 ATGMRVGELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSALQEK 262

Query: 260 ------------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                         ++++           A  A V   + H +R  +AT   + GA   E
Sbjct: 263 SAASSQALFLGVRAKRIDQRIVRSIVHEAAAAANVPDVAPHALRHSAATHMLNGGADLRE 322

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G  +++  + YT  + + 
Sbjct: 323 VQELLGHSSLNTTQRYTHVSIQA 345


>gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 89/274 (32%), Gaps = 18/274 (6%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
            +     +L+  ++ S+     +  R  G     ++  + +R+          +  S  Q
Sbjct: 2   IEDMTVRNLSPATQRSYLHAVAKFSRFFGRSP-DRLGLEDVRAFQVHLVSTGISWPSLNQ 60

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + ++R  +   +    +       +   +   +     + +++ +F        + R A
Sbjct: 61  TVCALRFFYGVTLGHGEIP----ERIPYAREPRKLPVVLSADEVVRFLEAV-ASLKSRAA 115

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S+     V  + +    I+    K G    V L    + +L        
Sbjct: 116 LTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLAR 175

Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                   +     ++        ++    AG++K  + H +R   AT   ++G     +
Sbjct: 176 PEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRII 235

Query: 308 MATYGWKTVDQAETYTKGADRI-RLGIKNSRRIS 340
               G   +     YT+ ++ + R       R++
Sbjct: 236 QVLLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269


>gi|255103342|ref|ZP_05332319.1| integrase [Clostridium difficile QCD-63q42]
 gi|255652432|ref|ZP_05399334.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   FR     + +                L          +       TL 
Sbjct: 6   RKRNKNYVVYLEFRDDESGKRKQKNMGAFDKKRDANKRLAEVKDSIYKDSFLVPNEITLA 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++ +     +++ ++  S+ +     I    G +  +++   HI++ ++       
Sbjct: 66  GFLLDFLEKYK-DNISASTYKSYIAICKNHINPSIGKYRLQELRNIHIQNYIDDLAGNLN 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P +    +  +R+  K A R + +  N    +E P+ K      + KE M +      +G
Sbjct: 125 PQTIKVHINVLRLAIKRAYRIKLIKENIIDGIESPRIKKFKNEIYDKEQMLKLLEVA-KG 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           +   L     +  GLR S+       ++  +  +I   K  +                  
Sbjct: 184 TNLELPISLAIGLGLRLSEVLGLTWDNIDFDENTITVNKITSRLDGSVILKEPKTESSVR 243

Query: 234 TVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL                       F +     +     S  F+      
Sbjct: 244 KIFAPIELMNLLKNYRLEQNKKLLRSIVRNEYNLLFFDRKGNPIAEDVMSKKFRKFLENN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   ++     Y+       +  + S R
Sbjct: 304 DLPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNINTTLNVYSHVL--KEMDKEASDR 361

Query: 339 ISSVV 343
           IS  +
Sbjct: 362 ISENL 366


>gi|239621773|ref|ZP_04664804.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514964|gb|EEQ54831.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 396

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 95/357 (26%), Gaps = 50/357 (14%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            VT+ +T  G+  Y   +RK  G +              + +              P+  
Sbjct: 3   NVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKVDAENWAAKRVTVAKAEGTYIDPQAG 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
             T+  L   +       +   +   + E  +   +  + G+     +T +  +  V   
Sbjct: 63  KATVGELAPAWLAKKKLST-KPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGI 121

Query: 127 KH---------------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                             P SA   L +   +  +   A +   +  NP   +E P+++ 
Sbjct: 122 SQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRR 181

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---- 224
           +     T E + +     +   +  +        G+R  +     V  +      I    
Sbjct: 182 KKHVYLTAEQLDRLAGSVTPWRRDLVLVLG--LCGMRWGELIPLRVMDVDLEKHRIYIGV 239

Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276
                        T         +  +L              D       +  +  +   
Sbjct: 240 SAPMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWG 299

Query: 277 ------------ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                         +AG+    + H +R  +A++   AGA    +    G K+    
Sbjct: 300 NASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356


>gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82]
 gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 357

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +  R     
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R       TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRVIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +V  NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVETNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  + +        RLA +  + +G R  D CR     + +N   I+  KTGT + + L 
Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGTKLAIPLM 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L               G ET   +   + ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNVSGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|328466756|gb|EGF37877.1| integrase/recombinase XerC [Listeria monocytogenes 1816]
          Length = 357

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 105/354 (29%), Gaps = 41/354 (11%)

Query: 15  RTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + ++G     FR     G  ++              +         ++           T
Sbjct: 5   KDKNGTWFTSFRYINWQGEKKQKVKRGFSTRKEALEW--------ERQFLQQKTADLTMT 56

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--- 126
                  Y+K      +  ++  +  S  ++ I+    +    +I  K I          
Sbjct: 57  FLSFWEIYKKDMKNR-IRESTWETKISIVERKILPYFKNRKMSEIAPKDIIQWQNEMISY 115

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179
                  ++P         +  +F  AVR   +  NP        ++    +  WTKE+ 
Sbjct: 116 RDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMGKEKSVEMLFWTKEEY 175

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
           Q+F     + +    AFE L + G+R  +           N  ++   K+          
Sbjct: 176 QKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKGTLSISKSCQRLKGMDVI 235

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      +++P+   + +         +  +     +  +         A +  + 
Sbjct: 236 TEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPITKSYLHSEMTRGAKEQKIK 295

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +   H +R    ++  D+G +A  +    G +++D    Y       ++ I N 
Sbjct: 296 RIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYRYAHLFPTKQMEIANM 349


>gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 419

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 77/279 (27%), Gaps = 19/279 (6%)

Query: 78  YRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP-- 130
           Y KS       + + +  +++   +  ++  + +    +  I TK +          P  
Sbjct: 134 YFKSIIDIRHRNSSDSIIVNWNRVYALMLIFTDNQPMIFANIDTKLVEDFRLFLLDAPQG 193

Query: 131 ---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++A  +    +   K A    Y   +    ++  K K       T E++ +
Sbjct: 194 GNKKGTISQNTASTYFAIFKAGLKQAFVDGYFVSDIAAKIKGIKEKEARREHLTLEELNR 253

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 + +  + A  F   +GLR  D  +   + L       +                
Sbjct: 254 LVCTPCDNATIKRAALFSALTGLRHCDIMKMTWKELTKEGTHYRINFDQKKTKGVEYMPI 313

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
            +                 +     +  S         +G+ K  + H  R   AT+   
Sbjct: 314 SEQAYDLCGEPGHPDQLVFEGLPAPSWISKPLARWIEASGITKHITFHCFRHTYATLQLS 373

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSR 337
            G     +    G   V   + YTK  D  +       +
Sbjct: 374 NGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADAIK 412


>gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 347

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 93/304 (30%), Gaps = 11/304 (3%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           +G+R           I      L    P     +       TLK       KS +W   A
Sbjct: 32  NGKRKTKTVDTLEEAIIERQKMLNNDVPTSFTKDPDDTSGWTLKQAYDR-TKSLYWEDSA 90

Query: 89  VNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
            + +++  S F  I    G+     KIT   I   V +     ++  +  + L  +  +F
Sbjct: 91  WSYKVA--SNFKSISTYFGETMPIGKITLDDIDDYVNTLLTKGNSNGTINRKLAILSRIF 148

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           + AV +  + + P + + +            +E+        +  +     F  LLY+G 
Sbjct: 149 RTAVERGKLEVVPKIPLRKEAHHRVRFLTQEEENAFVKAFIQNGYNTHAEVFLILLYTGF 208

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  +  R   + +   + +I   KT       +P        +     E           
Sbjct: 209 RLGECWRIECRDINLELGTITAWKTKNGHPRTIPIVDKIRPILERKIFEAGENGKLFPTA 268

Query: 265 NATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +   F   +       G+ K      H +R   A+  A  G +   +    G   +    
Sbjct: 269 DNRWFESAWNRIKRLLGLEKDVQLVPHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTM 328

Query: 321 TYTK 324
            YT 
Sbjct: 329 RYTH 332


>gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088]
 gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088]
          Length = 271

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 80/262 (30%), Gaps = 9/262 (3%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           ++  I +        + +  +  ++    +  +R   D +  K     I+          
Sbjct: 5   IREAIDDLILDMEIRNYSDGTIRTYSYILNSFLRFIEDKEINK-KRDLIKQMKRYLVLLK 63

Query: 131 SSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                 ++   + V+F+  ++   +  N   + + PK   + I     E   +     +E
Sbjct: 64  RKNRSERYRHLVAVVFRNLLKTLNMDPNNLKTPKVPKSIPKSI----SEKEVKRLFKAAE 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
             + ++    L  +GLR S+     ++ +           K      V   +    LL  
Sbjct: 120 KLRDKVILMLLYKTGLRVSELVNLKLKDIDFTDRSIKVRGKGNKERVVFFDEECKTLLEK 179

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                       D       +  +   AK  K     + H +R   AT   + G     +
Sbjct: 180 YIKNNSVNEKLIDISVRQIQRI-VKKTAKKAKIKKRVTPHVLRHSYATHLLEKGLNIRYI 238

Query: 308 MATYGWKTVDQAETYTKGADRI 329
               G  ++   E YTK  ++ 
Sbjct: 239 QKLLGHSSLSTTEIYTKVTNKK 260


>gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 337

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 88/334 (26%), Gaps = 38/334 (11%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +T  G+ +   R     G+RIR           AY   +T    ++ ++   +     L
Sbjct: 4   RKTGSGEWLCDLRPTGVKGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125
             LI  +        L   +    +        I    G+    +IT        E    
Sbjct: 62  SELIELW------HDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLK 115

Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                         P +      ++  +F    +  + ++   LS     +  E +  + 
Sbjct: 116 GEIPDVNGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFL 175

Query: 176 KEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +  +    +   S      +  +  L +G R S++       +     + K  K+  +
Sbjct: 176 YPEEIKTLLQYLSESNSPSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKV 235

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            ++ +       +        T              F         +    +  H +R  
Sbjct: 236 RSIPISKELYNEIPKKRGQLFTPC---------RKTFERTVAKAGIELPEGQCTHVLRHT 286

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G   +     Y   A
Sbjct: 287 FASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320


>gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           CB15]
 gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus
           NA1000]
 gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15]
 gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus
           NA1000]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 86/283 (30%), Gaps = 31/283 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDF----DYRKITTKHIRSG 122
           +   + +          +  +  ++     +Y + +    G+        +I+   +R  
Sbjct: 4   RQAYAAWLDHLTLERRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGY 63

Query: 123 VESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  R+       P S  Q L+S+R   ++  ++  VA      V  P+ K    RP +++
Sbjct: 64  LAWRRQGEHALAPRSLSQALSSIRAFHRYLDQRHGVANAAVDLVRGPRLKIGLPRPVSED 123

Query: 178 DMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +          +    E ++       L   GLR S++    +           T K 
Sbjct: 124 QARDLITQAAEDTERDPWETARDEAVLTLLWGCGLRISEALSLRMSDAPLAATLRITGKG 183

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV 282
           G    V + D     +                 F       ++        +    + G+
Sbjct: 184 GKTRIVPVLDAVRDAIEAYLDELPFNLAPDEALFRAKRGGPLSPRHVQGLVQTLRGRLGL 243

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               + H  R   AT    AGA    +    G  ++   + YT
Sbjct: 244 SDRVTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYT 286


>gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302]
 gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302]
          Length = 418

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 88/308 (28%), Gaps = 16/308 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +A   S  + E      +          +        + +V+ + ++E     +  
Sbjct: 104 REYDNASLYSDTETEQAEQKERLQQNFIKYFDK-VADKRHRNSSVSIQTNWERVHVLLKM 162

Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +GD     +I  +            P           ++A  + +  +   K A    Y
Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + I+    ++  + +       T +++ +  +   E    + A  F   +GLR  D  + 
Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +       K   T             +                 +   N +  S  
Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +A   KAG+  + S H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402

Query: 331 -LGIKNSR 337
                  +
Sbjct: 403 NKAANAIQ 410


>gi|228956231|ref|ZP_04118107.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803440|gb|EEM50183.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|324328863|gb|ADY24123.1| YdcL [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 353

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K+  + G   +  R     G  ++++              + +         +     
Sbjct: 3   IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 53

Query: 67  KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              T + +   Y    +      ++N+  +  + ++ ++++ G      IT +H+     
Sbjct: 54  SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 111

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +++     +F T++  +F + ++   +  NP       +++++    + + +  + 
Sbjct: 112 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240
                +    +  F  L YSG R  +      + +       +I   K    +T      
Sbjct: 172 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 231

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282
             +++ +                + A                  T     F      A V
Sbjct: 232 SNRIIMLPNFVMNLLKSIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 291

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 292 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335


>gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 351

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 107/356 (30%), Gaps = 45/356 (12%)

Query: 16  TRHGKII----YYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           TR GK+     YY      RR +             +         +       +    +
Sbjct: 4   TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEW--------ERNFLQQQQKNLDIS 55

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +  +  Y        L  ++ I+    FD ++          +I T  IR+        
Sbjct: 56  FENFVEIYFADMENR-LRESTIINKRYVFDLKVTPYFKHKKMCEIQTSDIRAWQNELIKK 114

Query: 130 PS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
                   S    L ++   F +AVR   +  NPC       +   + +  WTK++ ++F
Sbjct: 115 GYAPTYLKSINNQLAAL---FNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEF 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                   + R+AF  L ++G+R  +      + +      I   K+             
Sbjct: 172 LPSMDSKPEARMAFLLLYWTGMRIGELLALTYEDIDLEKRCITINKSYQRLNGKDMITPP 231

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   + +P   ++ L            N    +   +           + GV +  
Sbjct: 232 KTPKSNRKISIPPFLVEELKEYCSMLYGITENERMFRFTKSFMEHEMVRGIKETGVRRIR 291

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            H +R   A++  + G     +    G + ++    TY+      +   + + ++ 
Sbjct: 292 LHDLRHSHASLLVEMGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELAEKLE 345


>gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 100/312 (32%), Gaps = 19/312 (6%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                         A      K E +         L   ++  RK+              
Sbjct: 60  ARTLRKAEDIRRERAEALLNAKVEAVPESTSSDMLLSDWMAIVRKNHEHRG--ARDLNGI 117

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFK 145
           ++    +++   D     +  +     ++  +           +P +A  + T++R    
Sbjct: 118 DNARKNLLKFRVDVRLCDVDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALN 177

Query: 146 WAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            AVR+  +A NP   +E     K         T E++++  +      Q R A+ F  + 
Sbjct: 178 EAVRENLIASNPWYRLEMTEKIKVPESKRDFLTIEEIKRMMATPFFNEQVRQAYLFSCFC 237

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINND 260
           GLR SD  +   + L  +    +     T     V +P     +  +   G  T      
Sbjct: 238 GLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDGLVF 297

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               N     +  K  A KAGV K  + H  R   A +    GA  + +    G ++V  
Sbjct: 298 GGLPNEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRS 357

Query: 319 AETYTKGADRIR 330
            + Y K  D+ +
Sbjct: 358 TQVYAKIVDKKK 369


>gi|307701389|ref|ZP_07638409.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
 gi|307613404|gb|EFN92653.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
          Length = 368

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63
            +T+ R + G+++Y  R   G+               +   +                N 
Sbjct: 3   GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121
                 TL  +   Y + A   +    +   + +     I  K       R +T + I +
Sbjct: 63  DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121

Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171
            V   +  P          +  + +  +  LF + +    +  NP   +  P        
Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T + +++            +   FL  +GLR  ++       +     +I   K   
Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238

Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270
                               TV +    + LL    +    F  +   +         F 
Sbjct: 239 QGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298

Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              +K            H +R    +    AG     +    G K +      Y     +
Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINIYGHITPK 358

Query: 329 -IRLGIK 334
             R    
Sbjct: 359 DARAAAD 365


>gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM
           20547]
 gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM
           20547]
          Length = 316

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 33/285 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
            + E+         L+ N+  ++       +      G   +  +    +R  +     +
Sbjct: 8   AVEEWLAHLGVERGLSANTTSAYRRDLVAWVAHLDAAGRTSWPSVQAADVRQHLADLTAS 67

Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + + ++R    +A+ + +V ++    V  P       +  + +++ +     
Sbjct: 68  GRARSTVTRMVVAVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLIEST 127

Query: 187 SE------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
                           + R   E L  +G R S+     V  +  +   ++   K     
Sbjct: 128 GPVEGGADAVELAVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLVGKGSKER 187

Query: 234 TVE-----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            V                   +LA    G     +N   +++          A   +AG+
Sbjct: 188 HVPLGGAAAAAVGDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTAAGRRAGL 247

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             + S H +R   AT     GA    +    G  +V   + YT+ 
Sbjct: 248 GEHLSPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRV 292


>gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
 gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296]
          Length = 438

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S  + + ++R    + V    V  +P   V  PK      +  + ED+Q+  + 
Sbjct: 188 LPLGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAV 247

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQ 227
                  G + R   EFL  +G R S+   A +  +                  +     
Sbjct: 248 PDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFG 307

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFSIWFKAK 276
           K      V +     K +    +     F+ +              ++      +  K  
Sbjct: 308 KGNKERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWLILKEA 367

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A  AG+  + S H +R   AT     GA    +    G  ++   + YTK 
Sbjct: 368 AEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKV 418



 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126
           L+  I +Y          + ++  S+     +        G  D  +ITT  +RS +   
Sbjct: 49  LQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMATLGVIDPERITTAQVRSFMREL 108

Query: 127 K 127
            
Sbjct: 109 A 109


>gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 413

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SYFDQIIRKSGDFDYR-KITTKH 118
             TL+  I  Y +     + +  +  ++            +    +    D    +    
Sbjct: 17  EQTLEAFIE-YLRLE--RNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDLVRNW 73

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   ++  + T ++  + L++++  +K+   +  V  NP   +  PKR+       T+  
Sbjct: 74  IMQQMDD-ELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQ 132

Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
           +++               + RL  E +  +GLR ++      Q +     S++    G  
Sbjct: 133 IEEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRK 192

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN 283
                      E    ++ L          FF+    + ++                G+ 
Sbjct: 193 ERIVPFGEALKEQMKAYLTLKERKVGQSRYFFVTLKCRPLSGADVYQVVHKALDVVPGLP 252

Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
           +  AH +R   AT   +AGA    +    G   ++    YT    ++++       R  S
Sbjct: 253 RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQS 312

Query: 342 VVDS 345
            V S
Sbjct: 313 QVPS 316


>gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 18/274 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           K +    R  A   +L   +   + S     +R  G  +   +T +   S + +++    
Sbjct: 3   KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +P +   + ++++ L+K  ++  +                      +++++         
Sbjct: 62  SPETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRE----RNLPAVLSRDEINAIIDAT-P 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +     +  SGLR S+        +   N    ++  K        L    + LL 
Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176

Query: 247 MTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                                    T  + +FK  A  AG+  + S+H  R   A+   +
Sbjct: 177 EYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFE 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +G     + +  G       + Y   +++  LGI
Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270


>gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 75/258 (29%), Gaps = 13/258 (5%)

Query: 75  ISEYRKS-----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH 128
           I++Y+K        +   +  +  ++     +  +          T  ++          
Sbjct: 5   INKYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTVFNLMPYRIYIAGL 64

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L+++R   ++   Q            +  +                ++    
Sbjct: 65  NAKTISKKLSAIRSFVEFLNEQGLHVALQADESIKVAKTLPKPVS----HAHILEALSQS 120

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             Q +L    L   GLR S+     + ++ N        K      + L      L+   
Sbjct: 121 DLQEKLLAVMLYTLGLRISELASLELHNITNEWIR-VIGKGNKQRDIPLLGTTRALIDEY 179

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                 + F    + ++++             +  +  + H +R   A+   + GA   +
Sbjct: 180 LSTFVVKKFLFEKNGERLSENSLRYMITKIFKRVALKVTPHQLRHSYASSLLNGGAPIVD 239

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G  ++   + YTK
Sbjct: 240 VSELLGHSSMATTQIYTK 257


>gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 361

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 114/351 (32%), Gaps = 39/351 (11%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G+       G     ++ R    +  T   A +  +       E   +      T
Sbjct: 7   YKRKDGRWECRISLGSESGHKKYR--SFYGKTKEEAELKMVMACQ--SEEHCNEEITEMT 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K L  E+  S     +  ++  ++       II   G  +   I  K +   +E + H 
Sbjct: 63  VKELALEWF-SVSKNRIKESTAANYRMKIEKHIIPPFGGMNAALIKAKAVYEFMEKKLHD 121

Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA      +  ++ +F++A R+  +  N    +  PK+    I   +K++ ++  ++ 
Sbjct: 122 GLSARYISDIMVVLKSIFRYAAREYRIN-NVIDGIIMPKKAKPEITIMSKDEQKRLVTYI 180

Query: 187 SEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           ++  S   L     LY+G+R  + C    +++      +  + T   I     D   K++
Sbjct: 181 NDNRSTSTLGVALSLYTGMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCFEGDNKTKVI 240

Query: 246 AMTPIGKETFFINNDKQ-----------------------KMNATQFSIWFKAKATKAGV 282
              P  + +                                +        FK     AGV
Sbjct: 241 IAEPKSQSSRREIPIPDCLIPMLKELKGKNSAFILTGTEKPIEPRTMQYRFKRILENAGV 300

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
              + H +R   A+ + + G     L    G  +V    + Y   +   + 
Sbjct: 301 REYNYHVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHKR 351


>gi|27375981|ref|NP_767510.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 gi|27349120|dbj|BAC46135.1| bll0870 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 103/333 (30%), Gaps = 17/333 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKW 73
           R   G+     R+      R       T    +   L     +  ++   R    TTL  
Sbjct: 5   RKLRGRWQAQVRRRGVP-PRAKSFDTKTAAERWARDLEAEADRSGWVADTRAAEKTTLGE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
           L+S Y            S  +  +    +          K+T+  +    + R  T  P+
Sbjct: 64  LLSRYANEVTPAKRGAVSEKARINSI--VRCPISHRTLAKLTSSDVAGYRDERLKTVAPA 121

Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + ++ L ++    + A R+   +V  NP   V RP       R   + + Q+       G
Sbjct: 122 TVVRELNTISHAIEVATREWGLWVPRNPVKLVRRPPVPRGRTRRLKEGEEQRLLDACDRG 181

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P L    +L   +G+R  +      +H+           T             + +  
Sbjct: 182 RTPLLKPLIILAIETGMRRGELLDLRWEHIDLKRGVAHLPLTKNG-DSRDVPLSCRAVQT 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
               +     ++    M      + F+    +AG+ +   H +R  + +   + G    E
Sbjct: 241 LQELRSAGVRHDRVFSMTGNSVRLAFEHLRVRAGMSDLHFHDLRHEAISRLFEKGLNIAE 300

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           + A  G + +   + YT         +    R+
Sbjct: 301 VSAISGHRELKMLQRYTHL-----RAVDLVARL 328


>gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 399

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 117/394 (29%), Gaps = 74/394 (18%)

Query: 18  HGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            GK  +  R        G  +               Y         K  ++        T
Sbjct: 11  RGKDKWLVRIFLGYDENGKRKYHNKTIYGSKKDAEKYKIEKLNEINKGIFV---EPANIT 67

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESR 126
           LK  + E+ K++  G +   +  S+    +  I    GD+   K+    I+     + ++
Sbjct: 68  LKEYLDEWIKTSLKGRVKATTYQSYVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMNK 127

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +     T ++     AV+ + ++ NPC +V+ PK+  + ++  T E  ++F    
Sbjct: 128 NLSARTIRYTHTILKNALNQAVKWQIISNNPCNNVDLPKQTKQEMKVLTPEQAKKFLEAC 187

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTG 230
               +  + FE LL SG+R  ++     + +                       + +   
Sbjct: 188 VYN-RWGILFEVLLTSGMRPGEALGLKWEDIDFKNNRIYVKRNLTRTNDGWKLEEPKTPR 246

Query: 231 TIITVELPDGFMKLLAMTPIG-----------------------------------KETF 255
           +  T+ LP   MK L                                            +
Sbjct: 247 SRRTIPLPKEVMKSLKEHKKNQTEEKLKAKETLNYDKDKDKFKPEEWQEKLKDPKVYIDY 306

Query: 256 FINNDKQKMNATQFSIWFKAK----ATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
                 Q  +        +        +A +     + +R   AT+   AG     +   
Sbjct: 307 GFVFAAQNGSPLDMRKVVERYFKPLLKEANLPDIRLYDLRHTCATLLLAAGENPKVVSER 366

Query: 311 YGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
            G   +    +TY+       +  + + ++  ++
Sbjct: 367 LGHANITLTLDTYSHVLPD--MQKEAAAKLEEML 398


>gi|225023696|ref|ZP_03712888.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC
           23834]
 gi|224943578|gb|EEG24787.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC
           23834]
          Length = 285

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 90/250 (36%), Gaps = 13/250 (5%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +++ +        +T   I   V  +  + S+  ++   +R +    V +    ++    
Sbjct: 18  RLLPELRGVLLSDLTRDFIHQVVNQKNCSSSTKNRYFALIRAILNKCVNEWD-WLDKAPK 76

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  K   + IR    E+ Q+  +        +    F L +GLR ++      + +   
Sbjct: 77  LKLHKEPKKRIRWLYPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLR 136

Query: 221 IFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                           I V L    M++L   P   +  F ++   ++ +   S  ++  
Sbjct: 137 RQVAWIYPDQAKAGKAIGVPLNHTAMQVLMDRPRVSDYVFTHSKGARVKSIS-SRVWREA 195

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             KAG+ +   H +R   A+     G     L    GW++V+  + Y        L  ++
Sbjct: 196 LEKAGITDFRWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAH------LAPEH 249

Query: 336 SRRISSVVDS 345
             + + ++DS
Sbjct: 250 LSQHARLIDS 259


>gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45]
 gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45]
          Length = 308

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 90/291 (30%), Gaps = 33/291 (11%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              I  + ++       A N+  ++        R       G    ++   +      E+
Sbjct: 4   AHWIGGFLEAQAAERGAADNTTAAYARDLADFTRWLTARGAGLDTAQRADVEDYLVTCEA 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + L+S++ L+++A  +   + NP + +  P +     +  + E++ +    
Sbjct: 64  EGLAISTRARRLSSIKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIEA 123

Query: 186 -----WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                 +E  + R A    L   +G+R ++     V   + +   +    K G    V L
Sbjct: 124 AASQGRTEDDRLRNACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERMVPL 183

Query: 238 PDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSIWFKAKATKAG 281
                  LA     +                  F        +    F +  K  A  AG
Sbjct: 184 SPPARVALATWLSRRDEQEAVAHAAGKPASVHLFPSRGKAGHLTRHAFYLLIKEIAVSAG 243

Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           V     + H +R   AT     GA    +    G   V   E YT   +  
Sbjct: 244 VSPGKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEER 294


>gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 307

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLA 245

Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3]
 gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3]
          Length = 305

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 27/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122
           L+++I +Y +      LA  +  S+    ++  R         +   IT   I       
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPPVIKGYLLYC 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172
            + R +T  +    L  ++  F++   +            +         +     +  +
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231
                   + +       +       L  +G+R  +        +     +I    K   
Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283
            ++  L D   + L    +  E ++         ++    +      + F   + + G  
Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGFK 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH  R   A+    AG   + L        +   E Y   
Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 326

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 78/309 (25%), Gaps = 42/309 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS- 132
            Y +       LA  +   +     ++   + D      ++ T HIR  V        S 
Sbjct: 17  RYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRSG 76

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
                 L+  R  F WA RQ  V  NP   V  P+      +    +D  +   F     
Sbjct: 77  RGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSG 136

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 ++     E L   GLR  +          +     +           +     K
Sbjct: 137 SDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKGSK 196

Query: 244 LLAMTPIGKETFFINNDKQ------------------------KMNATQFSIWFKAKATK 279
             ++         +    +                        ++         + ++  
Sbjct: 197 RRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSRLRQRSQL 256

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKN 335
           AG+      H +R   A+    +      +    G   +   + YT+  D   L      
Sbjct: 257 AGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLAKVYDA 315

Query: 336 SRRISSVVD 344
           +   +    
Sbjct: 316 AHPRARRKP 324


>gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 400

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 113/360 (31%), Gaps = 38/360 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  T++  
Sbjct: 42  KTPSGTWKALVRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPSERMTIEDA 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            S  S   +   +++  G +    +T + I    + R        
Sbjct: 101 LKRYLSEISPTK-RPASADSDARHAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLDRKD 159

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176
                     +P++    L  +  LF  A+++  +    NP  S+ RP       R  T+
Sbjct: 160 AKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTR 219

Query: 177 EDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228
           E+  +  +     S P L +     L +G+R S+        +  +   ++      T  
Sbjct: 220 EEETRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQETKNTMS 279

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN- 283
               +TVE    F + L       +T  I         K  A QF+  +      AGV  
Sbjct: 280 RTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTRIKKDAGVPD 339

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R  + +   +AG +  E+ A  G K++   + YT              ++  VV
Sbjct: 340 FRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVGKLDQVV 394


>gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
 gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18]
          Length = 437

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P+S  + + ++R    + V    V  +P   V  PK      +  + ED+Q+  + 
Sbjct: 187 LPLGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAV 246

Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQ 227
                  G + R   EFL  +G R S+   A +  +                  +     
Sbjct: 247 PDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFG 306

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAK 276
           K      V +     K +    +                F+N    ++      +  K  
Sbjct: 307 KGNKERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEA 366

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A  AG+  + S H +R   AT     GA    +    G  ++   + YTK 
Sbjct: 367 AEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKV 417



 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126
           L+  I +Y          + ++  S+     +        G  D  +ITT  +RS +   
Sbjct: 40  LQKAIDQYLIHLRVERGSSEHTIASYARDLRRYSAYMATLGVIDPERITTAQVRSFMREL 99

Query: 127 K 127
            
Sbjct: 100 A 100


>gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
 gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573]
          Length = 266

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 81/251 (32%), Gaps = 18/251 (7%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             + + + G   + ++    +R  V   + +    SS    L+S+R    + + +  +  
Sbjct: 1   MARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQA 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P+++    +    ++M Q      +     + R   E +  SGLR ++    
Sbjct: 61  NPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSI 120

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------QK 263
            V+ +      I+          V       + +      +     +++          +
Sbjct: 121 DVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTR 180

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++             K  V  + S H +R   AT   ++      +    G + +   + 
Sbjct: 181 ISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQI 240

Query: 322 YTKGADRIRLG 332
           YT   D   L 
Sbjct: 241 YTH-LDFQHLA 250


>gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
 gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125]
          Length = 315

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128
           L S+Y K       + ++   + S              D+  +  +HIR    + +    
Sbjct: 22  LFSDYLKFE--RQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQGEHIRRYSMALRSKQL 79

Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  +    L+ +R L+K+     + ++    NP + ++ PK      +    + M +   
Sbjct: 80  SGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLE 139

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
              +     + +   E +  SGLR S+   A +Q +      I    K      + +   
Sbjct: 140 IPDDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGSK 199

Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            +  L    I +  F   +         K +++  Q  +  +    K G+      H +R
Sbjct: 200 ALNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+   ++      +    G  ++   + YT   D   L 
Sbjct: 260 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 300


>gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 303

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 24/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKH- 128
           I  Y +       + +S  ++ES   Q +      D        I    +R  +      
Sbjct: 13  IVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREWLAGLYRD 72

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
             +  +  + L ++R LF++ +R+  V +N    V  PK   +     T + +       
Sbjct: 73  DLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVNSLIDGV 132

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELP 238
              +      ++ R  FE L   G+R S+     ++ +      ++ +        V LP
Sbjct: 133 GGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKKERQVPLP 192

Query: 239 DGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVR 290
               + L            +   F+N+ + ++     S   K  AT          H  R
Sbjct: 193 GQAAQSLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDPGIHPHSFR 252

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT     GA    +    G   +   + YT
Sbjct: 253 HAYATHLLADGADLRAIQELLGHARLSTTQKYT 285


>gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii
           M21/2]
          Length = 357

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 86/312 (27%), Gaps = 25/312 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKI 114
           +   +    K   T++     ++K     +L+  S   + +      R  GD       I
Sbjct: 37  RNRDLRPAAKANPTIQQAFERFQKYNRLKNLSQGSLDFYVAKGRSFFRFLGDTEQPINTI 96

Query: 115 TTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPK 165
           T + +   +   K      ++    L  +R    W + + Y+   P         ++ P 
Sbjct: 97  TEETVEDYIFYMKDQQLHDTTINTNLRMVRAFLYWCMEKGYLEKYPIRLVRADDPIKEPY 156

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              E  +   + D +          +  +   FLL +G R S      +  L     +  
Sbjct: 157 TTDELQKLLKEPDCKTCSFAEY---RNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGT-V 212

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKA 277
             +       ++      L+ +     E    +            +M             
Sbjct: 213 FFRHMKARNQQIVPLSKALVKIMEEYLEHRTSDPTAPLFVSEYGNQMTLNSLGNAIWNYN 272

Query: 278 TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335
              GV K+  H  R   A +   AG     L    G   +     Y    AD +R     
Sbjct: 273 HSRGVEKTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDA 332

Query: 336 SRRISSVVDSDD 347
              +  +   + 
Sbjct: 333 LNPLEQLTRQNR 344


>gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462]
          Length = 182

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL 245
             G + R  FE +  +GLR S+     +  L   +     T K      V +       +
Sbjct: 9   PLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAADWV 68

Query: 246 AMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                            +  F+N     +         KA     G+ K  + H +R   
Sbjct: 69  NRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRHSF 128

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   + GA    +    G   +   + YT  +++  + +
Sbjct: 129 ATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168


>gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 358

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 116/341 (34%), Gaps = 28/341 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPY-PHESTFIPAYMSALTGSTPK 57
            + LP  V       G+  +Y+++G G      RIRLP  P    F  A   A     P 
Sbjct: 3   KISLPRHVH-HVISGGRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPT 61

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                       T+  LI  Y  +       L+  ++  +        +  GD   R + 
Sbjct: 62  P---------TDTVGALIDAYEGAWPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARDLR 112

Query: 116 TKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            KH+ + +       P +A   L +++ L +WA     +  +          K  G  PW
Sbjct: 113 PKHVDALIRKIGAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHRFEKGAGHEPW 172

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230
           T+  +   +  ++     R  +    Y+G R SD  R     + +  FS++ +    K  
Sbjct: 173 TEAQLAFAEQTFT--GPLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGVKPW 230

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
             I  EL                     +  +  +  Q    F A+  K  +      HG
Sbjct: 231 CPIFAELETEMATWERRLGPYLLQEIGKSAGKPFSTNQMWKAFDAERAKHPILAGAVPHG 290

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R  +       G +A ++    G  +V+  E Y + +DR 
Sbjct: 291 LRANAVIRLRVGGYSALQISDMVG-MSVEMVEHYCRHSDRK 330


>gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 369

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 117/366 (31%), Gaps = 44/366 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +   +T   A    +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYNTKKEAEKD-VAKKITELNEGTFIEPSKVTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  ++ + +     S+  ++ + + +  +  +I   G     K+   HI+   ++  +  
Sbjct: 66  KEYLNHWLE-IKSMSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYKTAINKG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     ++     AV+Q  +  NP    E PK++   I+ WT+E++++F     
Sbjct: 125 IANNSILLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKKFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +     ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKR 243

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T+ +P   ++ L                    ++    N   + +    F   F  +  K
Sbjct: 244 TIPVPKETIESLKRHKILINKEKLRFGSAYQDQDLINCNEFGKIIKKAHFRKCFIRETHK 303

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AG+     H +R   ATI    G     +    G   +      Y+       +  +  +
Sbjct: 304 AGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVK 361

Query: 338 RISSVV 343
                +
Sbjct: 362 NFGKSI 367


>gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus 98/2]
 gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
           solfataricus P2]
 gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2]
          Length = 291

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 30/272 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123
             L + +  +         +   + +     +    + D RK+T++ +   +        
Sbjct: 12  GDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFI-NKDPRKVTSEDLNRWISSLLNREG 70

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E ++    +   ++ ++R   KW         N  +    PK + + ++   +
Sbjct: 71  KVKGDEVEKKRAKSVTIRYYIIAVRRFLKWI--------NVSVRPPIPKVRRKEVKALDE 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
             +Q+  +     ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    
Sbjct: 123 IQIQKVLNACKR-TKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERI 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V   D    LL     GK+      D +           K    K G++   H +R   A
Sbjct: 182 VFFTDETKLLLRKYIKGKKAEDKLFDLK---YDTLYRKLKRLGKKVGIDLRPHILRHTFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T+S   G     L    G K +   + YT   
Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270


>gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 104/360 (28%), Gaps = 46/360 (12%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGST--------PKREYINSP 64
            R G+ + ++    G+R    +           A+  A++ +         P  + I+SP
Sbjct: 5   DRDGRWMVFYHDETGKRRDKSFGRGEEAYAQAEAFNKAVSDAKKLCTALPLPPTDLISSP 64

Query: 65  RKKP-------------------TTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIR 104
              P                    T + L  +Y           N ++   +   +Q   
Sbjct: 65  APAPVKMIEEITLPEKTIQSGQGMTFRELAGKYLAHLKVSGRTENNTKKLAKMIDNQFNP 124

Query: 105 KSGDFDYRKITTK-------HIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVA 154
             GD     +T                 +++ P    +  ++   +  +F + V      
Sbjct: 125 IIGDRVVNSMTYIDDMVPFIQFFQETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGLTT 184

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           +NP    ++  R+       T +D+++         +  +   F L +    S+      
Sbjct: 185 VNPMKGRKK-SREKPRDVQLTVDDVKRIMDHAEPHVRWAMEVCFSLGTRPGESELLALKW 243

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWF 273
            H+  +    K   + T     +P     L  M  +  E+      + +          F
Sbjct: 244 DHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKEVKTESQSGYVIEWRGQPIGMIRKGF 303

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           +    +AG+      + +R   AT     GA    +    G   +      Y    +  +
Sbjct: 304 RRACERAGITYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLEGEK 363


>gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1]
 gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 73  WLISEYRKSAHWGSLA-VNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRK 127
             I+ Y  +A     A  N+ +++          + +  G     +   +   +G+E++ 
Sbjct: 9   DWIALYLDAAAAEQGAARNTLLAYGRDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQG 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
              ++  + L+S++ L+++A  + +   NP L +  P R  +     + E++        
Sbjct: 69  LAAATRARRLSSLKQLYRFAHEEGWREDNPTLQITGPARTRKLPGTLSLEEVDALLEASA 128

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKT 229
                 ++  +     + L  +GLR ++     +  L+ +              +     
Sbjct: 129 TYGRNDADRLRNHCLMQILYATGLRVTELVSLPITALRGDPNMLLVLGKGGKERMVPLSP 188

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                +      +      P     F  +     +   +F    K  +  AG++    + 
Sbjct: 189 PARTAMAAWLDHLDATQEEPRSLFAFPSHGKSGHLTRVRFFTLIKELSASAGIDPARVTP 248

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT     GA    +    G   +   E YT   D  
Sbjct: 249 HTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDER 291


>gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist]
 gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist]
          Length = 349

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 86/299 (28%), Gaps = 59/299 (19%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140
            L+  +  ++ +     +   G+       ++ +  I        R    S+    + ++
Sbjct: 34  GLSDATLQTYRNSLGIYLSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAAL 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRL 194
           R   +  V +    +NP   +++PK       P + +++                 + R 
Sbjct: 94  RTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQAREISLRDRA 153

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDG 240
             E L  +G R S++    V                       +        +   L   
Sbjct: 154 LIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQHS 213

Query: 241 FMKLLAMTPIGKE--------------------------------TFFINNDKQKMNATQ 268
             KLLA + + +                                   F++N  +++   Q
Sbjct: 214 RPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQQ 273

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     A + +  S H +R   AT    AGA    +    G  +++    YTK 
Sbjct: 274 AGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKV 332


>gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
 gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913]
          Length = 314

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128
           L S+Y K       + ++   + S              ++  + ++HIR    + +    
Sbjct: 21  LFSDYLKFE--RQYSAHTVNQYVSQLGFAALYFNKLCDNWFAVQSEHIRRYSMALRAKQL 78

Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  +    L+ +R L+K+     + ++    NP   ++ PK      +    + M +   
Sbjct: 79  SGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGIKGPKFAKPLPKNLDVDQMARLLE 138

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
              +     + +   E +  SGLR S+   A +Q +      I    K      + +   
Sbjct: 139 IPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDINARNGEILVRGKGAKERLIPVGSK 198

Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            ++ L      +  F   ++          +++  Q  +  +    K G+      H +R
Sbjct: 199 ALEALKKWLAVRPLFMGADEHAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+   ++      +    G  ++   + YT   D   L 
Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299


>gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 345

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 104/305 (34%), Gaps = 21/305 (6%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
             YY  +G G       P    F   Y+                  +  T+  LI E+RK
Sbjct: 22  TYYYAWRGKGAPRMHAKPGTKAFTQEYVRLTREREKA--------SEDGTIGSLIDEFRK 73

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSAIQF 136
           +A +  LA ++R  +E  F  I  K   F  + I    + +   +  ++ + +P SA   
Sbjct: 74  TAGYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMH 133

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +  +  LF WA   E +  NP   VER    T     WT + + +  +        R   
Sbjct: 134 IALLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDDQLAKLLTEGV--PHLRNVA 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L++  R +D              SI+  KTG  + V      + +L           
Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251

Query: 257 -INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-----GATAHELMA 309
            +N+  Q   ++ F   ++ +  + G+   + H +R  + T +              +  
Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311

Query: 310 TYGWK 314
             G  
Sbjct: 312 ISGHS 316


>gi|262046512|ref|ZP_06019473.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260572961|gb|EEX29520.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 388

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/362 (9%), Positives = 92/362 (25%), Gaps = 45/362 (12%)

Query: 15  RTRHGKIIYYFRKGHG-------------RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           R R       F K                ++         +    Y   +  ++     +
Sbjct: 5   RKRGKTWYVRFSKRETQWDPEKQKNVSILKQKSKGGFKTKSEAQQYGIKMEAASIDGVDV 64

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                K          +  +  +  +  +++  + + +  + +  G    + I+    +S
Sbjct: 65  ----VKNPVFADYFEHWYLTFKFPIIRKSTQKRYITNYHYLEKYFGSTKIKDISRAKYQS 120

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKE 177
            +      H P++  +    ++     A+    +  N          +          + 
Sbjct: 121 FLNWLGKNHAPATVRKTNIMVKACAGNAIEDGLIVKNFTNRTTITGNQDNVRAIEYLNEG 180

Query: 178 DMQQFKSFWSEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           +M +          PR   ++     L++G R  +        +      I   KT    
Sbjct: 181 EMNKLVQLCLTNLTPRYTSKYLVLAGLFTGARLGELTALKWTDIDFKNKIIDINKTWNPN 240

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKA 277
                          +++    +  L    I    F     +     +++  + + +   
Sbjct: 241 LKILGPTKTESSVRKIKVNSFLLDKLKQLKINNSEFIFAIPRTGLPPSSSAVNQFLRKAI 300

Query: 278 TKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
            + G+NK     H +R    +     G     +    G   +      Y    D  +   
Sbjct: 301 KEIGLNKPDFHFHSLRHTHVSYLISQGIDIAAISKRLGHANIAITLSIYAHLLDEYKDQQ 360

Query: 334 KN 335
             
Sbjct: 361 DA 362


>gi|307708146|ref|ZP_07644613.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis NCTC 12261]
 gi|307615592|gb|EFN94798.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis NCTC 12261]
          Length = 384

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+  +       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KTNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica]
 gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica]
          Length = 472

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 115/362 (31%), Gaps = 47/362 (12%)

Query: 10  FVTKERTRHGKII--------------YYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           ++ + R  +G+                ++      ++  +P    +T            T
Sbjct: 73  YLARYRKTNGQPYTPDSQRRRLRALRLWFDWL--QQQHAIPTSPAATLAAPDRKKRPSVT 130

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112
                 ++   +  TL+  ++ + ++     L+  ++ S+E             G     
Sbjct: 131 ETHGQPDAIPARFATLRQHLAAWLEAVRGQGLSERTQESYEERLLPFISWCEARGVMTAP 190

Query: 113 KITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +++   + S     +         ++P S    L+ +R  F+W +++ ++  NP  ++  
Sbjct: 191 QVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPTDNMVL 250

Query: 164 PKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           P+ +            T   +         G + R   E L  +G+R  +     +  + 
Sbjct: 251 PREEKRLPAQVMNEDETHTVLAATDINTPTGLRNRAILEVLWSTGIRRMEVANLLLSEVD 310

Query: 219 NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA- 275
                +  +  K G    V + +  +  L+     +       D   +  T+        
Sbjct: 311 FGRGVVLVRQGKGGKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFITKKGRGLARG 370

Query: 276 ---------KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                       +A +    + H  R   AT   + GA    + A  G + ++  + YT+
Sbjct: 371 TLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTR 430

Query: 325 GA 326
            A
Sbjct: 431 VA 432


>gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRSINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEYYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT + +   VE  +       A       + + ++A+  E +  +PC  V     +  
Sbjct: 167 DLITKEMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L             +              K    +AG+N
Sbjct: 287 EQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLPTYESCCKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
 gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911]
          Length = 260

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 18/237 (7%)

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           D      +   + +  +K +  SA + ++S+R  +K+  R++    NP  +V  PK +  
Sbjct: 11  DVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSLPKLEKR 70

Query: 170 GIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
               +         +  ++    G + +   E L  +G+R S+  +  ++ +   + ++ 
Sbjct: 71  LPEFFYEEELNCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISLKDIDMALSTVL 130

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273
              K      +         L +                +  F+N     +         
Sbjct: 131 VHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGRESHDRLFVNFRGGPLTPRGIREIL 190

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                K+ +  +   H +R   AT     GA    +    G   +   + YT   + 
Sbjct: 191 NKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNE 247


>gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 314

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 93/282 (32%), Gaps = 26/282 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH--- 128
           L S+Y K       + ++   + S              D+  +  +HIR    + +    
Sbjct: 21  LFSDYLKFE--KQYSAHTVNQYVSQLGFAALYFSKLCDDWFGVQGEHIRRYSMALRSKQL 78

Query: 129 TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  +    L+ +R L+K+     + ++    NP + ++ PK      +    + M +   
Sbjct: 79  SGRTISLKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPLPKNLDVDQMARLLE 138

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG 240
              +     + +   E +  SGLR S+   A +Q +      I    K      + +   
Sbjct: 139 IPDDEPLAIRDKAMMELMYSSGLRISELVGANMQDISAANGEILVRGKGNKERLIPVGTK 198

Query: 241 FMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
            +  L      +  F   +         K +++  Q  +  +    K G+      H +R
Sbjct: 199 ALDALKKWLTIRPQFAKPDEIAVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+   ++      +    G  ++   + YT   D   L 
Sbjct: 259 HSFASHILESSGDLRAVQELLGHSSLSATQVYTH-LDFQHLA 299


>gi|218290561|ref|ZP_03494670.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239464|gb|EED06660.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 379

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 110/355 (30%), Gaps = 45/355 (12%)

Query: 15  RTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
             + G    +     R  +G+R +  +   +T   A   A+     +        +   T
Sbjct: 5   VRKRGNKWCFVIDVGRDENGKRKQKWFSGYATKKEA-EKAMAAKLQEIVSGVYVAENNDT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           ++  +  + +      +  ++   +E      II   G  +   +  +H+++     +  
Sbjct: 64  VETYLRNWLEDKRSQ-VRPSTYRGYEWLVRVHIIPHLGGIELSDLRPQHLQALYRKLQSL 122

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  + +     +      AV+   VA N   +V+ P+ +      WT ED++ F S
Sbjct: 123 DKPLSNRTILHIHLLLHEALDRAVKWGMVARNVADAVDPPRPEVRRSIVWTPEDVRAFLS 182

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
              E  ++   AF   + +G+R  +        +  +   ++  +T T            
Sbjct: 183 ANEEAEARYYAAFVLAVMTGMRKGEILGLRWSEIDWDSAVVRINQTLTWTKQGPILQEPK 242

Query: 232 ------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                  L      L        +  F   + + ++       +
Sbjct: 243 TDRSRRSVALSPETIVALRRHHALQAQERLLYGTEYKDHDLVFARPNGEPLHPRTLDNAW 302

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                +A V +   H +R   A++    G     +    G  T++   +TY+   
Sbjct: 303 YRALKRANVPRIRFHDLRHTHASLLLAQGVHPKIVSERLGHSTINITLDTYSHVL 357


>gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 91/292 (31%), Gaps = 30/292 (10%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT-- 129
             +         +  +  ++      + R + +       R IT   +     +   T  
Sbjct: 15  EAFCARLSAEGRSPATIAAYRRDLALVARVADELAPGIICRAITAGLLDRAFSAGAVTES 74

Query: 130 ---PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              P SA    +   ++R  F WA     V  NP  S+   +   +     T  + ++  
Sbjct: 75  GRGPRSAASLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLL 134

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R   E LL +G+R  +     +  +  +   ++ +  G +  V+  
Sbjct: 135 KELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFI 194

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAH 287
              ++ L    + +       + +         ++   Q +        KAG+ K  + H
Sbjct: 195 KTDLRTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPH 254

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G+R   AT    A      +    G + V   + YT   D      +   R+
Sbjct: 255 GLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQ--LEEALERL 304


>gi|254437180|ref|ZP_05050674.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252626|gb|EDY76940.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 369

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 104/320 (32%), Gaps = 16/320 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL+  +  Y         +  ++I   +     ++        +I+          
Sbjct: 98  IGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLGEISKTMTVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + S+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSSSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDG-RIIEDLKHWRQTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +Q +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQIQEDHIHLPMTKNGRSFDLPILQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        +         +    S           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSRDWVFP------SPKSESGHITRPER---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK 324
            +        +    + YT+
Sbjct: 326 IVGRLLNHTPLSITGQRYTR 345


>gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 343

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 112/314 (35%), Gaps = 23/314 (7%)

Query: 12  TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            K +   G    YY+    G +I    PH   F   Y      +TPK            T
Sbjct: 11  VKRKLADGSTRVYYYAWRGGPKIE-AKPHTEAFALEYAKLKALATPKIVE---------T 60

Query: 71  LKWLISEY-----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRS 121
           L+ LI  +     +++  + +LA  ++      F  I  K      R          IR 
Sbjct: 61  LETLIDRFTGPEDKRNPDFLALADTTQTDHLYAFRLIKEKWPKLPVRLTQQKGMKAEIRK 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              S    P  A + L S+  +F +AV  E +  NPC  +ER    +     W++E ++ 
Sbjct: 121 WHRSFAANPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQIKA 180

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F+      +   LAFE  L++G R  D      +         +  K G  + V +    
Sbjct: 181 FR--AGAPAHLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHSKL 238

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
             +L +    K    +N+ K+      F   +  + T+  +   + H +R    T  A  
Sbjct: 239 KAMLDVLDKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERARE 298

Query: 301 GATAHELMATYGWK 314
           G++  ++    G  
Sbjct: 299 GSSVEDIAKISGHS 312


>gi|302188726|ref|ZP_07265399.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 344

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 106/329 (32%), Gaps = 20/329 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K + R G + YY+  G   R  +P   +        + L     K    ++  ++  
Sbjct: 13  RLRKRKQRSGVVYYYYDLGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           T  ++  +Y         +  ++        Q+++   D       I  +H+   +  R 
Sbjct: 69  TFAYVAEKYMAEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127

Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            T P  A +    +  ++ +   +              K   E  R    ED      + 
Sbjct: 128 KTAPVRANREKALLSAIWNF--ARSAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYS 185

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A +    +G R +D+ +   + ++     ++  KT     +E+      ++ 
Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIREGRLWVQQGKTNAKRRIEITGELKVVID 245

Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
                KE   I        ++ Q M ++     F A    AGV K       +R  + T 
Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAGTD 305

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            A++     +     G  TV   E Y + 
Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 397

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 111/357 (31%), Gaps = 34/357 (9%)

Query: 18  HGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYM--SALTGSTPKREYINSPRKKPTT 70
            GK  Y     Y      R  +           A      +        + N+ + K   
Sbjct: 45  GGKRQYEFLKLYLIPEKTREDKAKNETTLALAKAIQSKRIVELQNDAHGFQNTNKSKANV 104

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHT 129
           + +L++   +S   GSL  N   +  +   ++    GD   +R I    + + V+  K  
Sbjct: 105 IDYLVNMRNQSKERGSL--NYEKTIGNTIRELKLFRGDYIAFRDIDKDFLSNFVDFLKQA 162

Query: 130 PSSAIQ----------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EG 170
             ++                  +   +R     A ++  + INP        +       
Sbjct: 163 KKASKYGLAKAGGVLSNNSVVAYYGVLRTALNKAFKEGIITINPTKEFNFADKVKAEASR 222

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229
               T E+++   +   +    + AF F    GLR SD  +     LQ +   I+   K 
Sbjct: 223 REYLTIEELKLLIATECKYEIMKQAFLFSCLCGLRVSDIRKLKWSDLQKSGERIRIEIKM 282

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                        + L   P   E    +      +    +   +  A  AGV K  S H
Sbjct: 283 QKTKEPLYLPISDEALKWLPQRGEAKDDDFIFPLTHEGTINNILQKWAKAAGVTKHISFH 342

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             R   AT+    GA  + +    G K +   + Y K  D+ +   +    I ++ D
Sbjct: 343 VARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397


>gi|225023328|ref|ZP_03712520.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC
           23834]
 gi|224943973|gb|EEG25182.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC
           23834]
          Length = 355

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 112/336 (33%), Gaps = 22/336 (6%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
             LP  + +++T  GK+ +Y+      R  LP    S F  A            + + + 
Sbjct: 6   RNLPMRMRQKKTSSGKVYFYYDTCAKPRKWLPL--GSDFFEALRKYADYEQEYSQELTAR 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD--FDYRKITTKHIRS 121
            ++  T + +   Y ++    +L+  ++  +      +     GD      +I +  I  
Sbjct: 64  IEREATFRVVAERYVRTV-LPTLSPRTQSDYLYQLKFLYEYFDGDNPAPINQILSVDIYE 122

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E R+     A + +    V+F WA +  Y             ++T      T  D Q 
Sbjct: 123 YLEWRQAAKIRANREIALFSVIFNWARKWGYTNNENPCRGVNKYQETGRHVYIT--DEQY 180

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           ++ +       +L      + G R +D  +     +++    I+  K  T + ++L    
Sbjct: 181 WRLYECAERHLQLLMLVAYFIGQRVADCLKIRTTDIKDGELWIEQNKVQTKVRIKLTGEL 240

Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288
            ++L              +        +  Q M              KAG+ K+      
Sbjct: 241 AEVLDLILRERGEQKHDYLFVSLGRQRHRGQPMTYAMLRGAMDRAREKAGIEKAAFQFRD 300

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R  +AT + DA           G  T +  + Y +
Sbjct: 301 LRAKAATDTDDA-VGIEAARVLLGHTTQNMTKRYIR 335


>gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC]
 gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC]
          Length = 317

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110
           T+    +  Y K+    SL  ++  ++      +                          
Sbjct: 5   TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 61

Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +   T  +IR  +  +    H+  +  + L++++   ++ V+ + +  NP   +  P
Sbjct: 62  PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGP 121

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +   E   P T E +    +        G + R   E    SGLR S+        +   
Sbjct: 122 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 181

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270
                   K      V +    ++ L                +  F+N   ++++     
Sbjct: 182 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 241

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             F+    K G++   + H +R   AT   + G     +    G  +++    YT  + +
Sbjct: 242 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 301

Query: 329 IR 330
           ++
Sbjct: 302 LK 303


>gi|78045014|ref|YP_360522.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997129|gb|ABB16028.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 371

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 117/368 (31%), Gaps = 47/368 (12%)

Query: 17  RHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + G              G  +   +            ++ +        +I   +    T
Sbjct: 7   KRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEK---IT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           LK  ++ + ++    +L+  +   +E+  +  II    + + +K+    I+    S++  
Sbjct: 64  LKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDE 123

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  + +Q    +   F +A++ + +  NP   V+ PK K    +    ++++   +   
Sbjct: 124 LSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSPKAKKYKAKILDLKEIKTLLNA-L 182

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------------- 233
           + +   +     L  GLR  +      + +     +I+ ++                   
Sbjct: 183 KDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSETS 242

Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                             +       +L             N+ + +N + FS  F    
Sbjct: 243 IRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSDFL 302

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
            K G+     H +R  +AT+   +   A    +  G  TV    + Y+       +  + 
Sbjct: 303 KKHGLPDIRLHDLRHTNATLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTD--MDEEV 360

Query: 336 SRRISSVV 343
           + +I  ++
Sbjct: 361 ANKIDDII 368


>gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
 gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8]
          Length = 293

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 86/273 (31%), Gaps = 12/273 (4%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T+      +        L+ N+   +      +++  GD    ++T   +R+ +    
Sbjct: 2   RGTITDWAEAWLLDCRARGLSPNTIGYYRDAVKAMVKVVGDKPMAELTADDLRAFLVKSF 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +P        + R   +WAV++  +           + P+     +R W  + +  
Sbjct: 62  EDGLSPGGVAARWRAARAFVRWAVKEGALGVDPTGKIRPPKVPEADLPVVREWEVKKLLA 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +     L  +GLR S+     V  ++     ++ +             +
Sbjct: 122 AAEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEAVRVRRKGGAVQWVPVSLPTY 181

Query: 242 MKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
             +LA     +     +      +          +  +  A  AG+  K  H  R+ +A 
Sbjct: 182 RAILAYARAERPPSDHDALFLTRSGLPLAYDGLKMVLRRLAEYAGLPPKPPHAFRRGAAV 241

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                G  ++ L A  G K+      Y + A++
Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEK 274


>gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606]
 gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606]
          Length = 407

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MAGKPKV--HIKHNRRKENLQLYLIAKPRTPVERQQNKETLELAAKIHAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMVKIALNRFKDFLKEQYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT   +   VE  +       A       + + ++A+  E +  +PC  V        
Sbjct: 167 DLITKDMMEHFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMQKDPCKGVVCKVDDQV 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQALIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNHLLKF 286

Query: 227 QKTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++           +     + L            ++     +    S   K    +AG+N
Sbjct: 287 EQNKTKGHSAHSGVIIPLNEGLLSLIGEAPEDLSSSIFNLPSYESCSKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L       + +
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEDAINSLPA 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 307

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 88/280 (31%), Gaps = 23/280 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124
           L +++ +   +    + +S  ++ +   + I   G+     I            IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180
            R+ +    SS  + ++ +R   ++       AI      +  P+  +        ++  
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +  S     ++       L  SGLR S++     + L          K   I  V L + 
Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +          F  +            +A       +      G++   + H +R 
Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHALRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+     GA    L    G  ++   + YT   D  RL
Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1
           str. 9-941]
 gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar
           Abortus 2308]
 gi|189025091|ref|YP_001935859.1| Phage integrase [Brucella abortus S19]
 gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6
           str. 870]
 gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3
           str. Tulya]
 gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4
           str. 292]
 gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9
           str. C68]
 gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
 gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19]
 gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya]
          Length = 307

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 6   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 65

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 66  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 125

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 126 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                            L  +  G +           +       F  +           
Sbjct: 186 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 245

Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 246 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 294


>gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118]
          Length = 322

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 98/291 (33%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A +  L     K    + P KK  + +  ++++ ++      +  +   ++   +Q++R
Sbjct: 18  AAQLKRLQEVLLKHLVKDEPEKKKISNQEYLTKFLEAKKIEGCSERTIKYYKVTVEQLLR 77

Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   RK+TT+ +R  +   +       ++      ++   F W   ++Y+  +P   
Sbjct: 78  KVLD-PIRKVTTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRR 136

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + + + +       T ED+++      +  +     + L  +G+R  +  R     +  +
Sbjct: 137 IHKIRAEKLVKNVITDEDIER-LRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRSDINFS 195

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273
                          V         L      +           +    ++  +   I  
Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKIHLINYLKSRTDANPALFVSLDRPYSRLKISGVEIRL 255

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    K  +++   H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 256 RQLGRKLNLDRVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae
           SmR1]
 gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 87/304 (28%), Gaps = 46/304 (15%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVES 125
           LI +Y         L+ ++   +     ++         +  D D RK T   IR     
Sbjct: 12  LIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIRKCAAR 71

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PW 174
                    S  + L++ R  F W   Q  +A NP   V+ PK+     +          
Sbjct: 72  LHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRL 131

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229
             +         +  +  R  FE L  SGLR S+     V  ++   +            
Sbjct: 132 VSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAE 191

Query: 230 -------GTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFS 270
                  G    V +       LA                     F+N    +++     
Sbjct: 192 VTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQ 251

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  KA      +  +   H +R   A+    +      +    G  ++   + YT   D 
Sbjct: 252 LRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYT-ALDF 310

Query: 329 IRLG 332
            RL 
Sbjct: 311 QRLA 314


>gi|320352532|ref|YP_004193871.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121034|gb|ADW16580.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 94/335 (28%), Gaps = 23/335 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +G+R R       +F+    + L  S    + I   +     L    +EY + A   
Sbjct: 19  RIVNGKRQR------KSFLTKKEALLWESEQLPDEIAEQKTHSVCLLDWATEYLRHAE-Q 71

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS--GVESRKHTPSSAIQFLTSM 140
           +    +       F Q    SG        ++T   ++     +S   + ++A +   ++
Sbjct: 72  NFTGKTFDEKRMAFRQFFAYSGINPKESANRLTALQVQKALQRQSISRSGNAANKDRKNL 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              + W V+   +      S           R     D            Q +L     L
Sbjct: 132 SAAWSWGVKFLQLPSENPFSKVEKFASERFERYVPTLDDFWKVFHSLVQDQDKLMLYCYL 191

Query: 201 YSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            +G R  +  R     +          +            + + D   + L     G   
Sbjct: 192 QTGARRDELFRLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSIKDDLAEWLLRHKKGNSD 251

Query: 255 FFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
              +      +        W K    +AGV     HG+R   A+I A       E+    
Sbjct: 252 LKEHVFVSYRSLAYQYRQHWLKKVCKEAGVKPFGFHGIRHLFASILAAQNVPLVEIQYML 311

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              ++   + Y       +   +    +  +  S+
Sbjct: 312 RHTSLATTQRYIHRL--KKENREVLAALPGLTASE 344


>gi|66395462|ref|YP_239821.1| ORF012 [Staphylococcus phage 2638A]
 gi|62635889|gb|AAX91000.1| ORF012 [Staphylococcus phage 2638A]
          Length = 345

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/327 (11%), Positives = 102/327 (31%), Gaps = 20/327 (6%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK   Y  K  G+R R           +  + L      R+  N       T +     +
Sbjct: 8   GKKWQYEFKHEGKRYRKKGFRTKREANS--AGLDKLNELRQGFNFE--NNLTFEDYFKNW 63

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS--SAIQ 135
            ++     ++ N+   +      I R   G  +  KI  +  +  +       +  +  +
Sbjct: 64  IETYKENIVSENTFRHYRFTLKHIQRHKIGKVEISKINKQMYQKFINDFSENRAKETIRK 123

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQ 191
              +++   + AV    +A NP   +     KT          ++++    +    + S+
Sbjct: 124 TNGAIKSALEDAVYDGLIAKNPTYKITFKAGKTTKSEEEKYISLEEYKALKEYLKDKSSK 183

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKL 244
             LA   ++ +G R S      ++++               +      +        + +
Sbjct: 184 SALALYIMICTGCRVSGVRSMKLEYINEFRSELYIDEHKTDSSPRYVAVGKNDLRHIINV 243

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           +  + I  + +   +  + ++    +   K      G+N  ++H +R    +       +
Sbjct: 244 IKNSTISYDGYIFKDSGKLISINAINKTLKKACESLGINYITSHALRHTHCSYLLAKDIS 303

Query: 304 AHELMATYGWKTVD-QAETYTKGADRI 329
            + +    G K +      Y+   +  
Sbjct: 304 IYYISKRLGHKNISITTSIYSHLLEEK 330


>gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 282

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 85/266 (31%), Gaps = 16/266 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRK 127
           K    +Y  +      +  +  S+    D+++    + D       I    +R  + S K
Sbjct: 10  KEAFLKYLDTI--RGYSPLTIRSYNDAIDEML-TFAEMDASSNLLSINLMPLRLKISSLK 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +A   L+++R   K+   +           E  K      +P T E +     +  
Sbjct: 67  AKSIAAK--LSAIRSFVKYL--RSQGKTVELRGDESIKTPKTLPKPITHEQILHALQY-- 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              Q  LA   L   GLR S+     +  +          K      + + D    ++  
Sbjct: 121 AEPQAALAITLLYTMGLRISELTHLRLSDISEGWSR-IHGKGSKERDIPMMDNIRTMVQE 179

Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                 +         +K++             K G+  + H +R   AT   + GA   
Sbjct: 180 YQKINPSREYVFELKGEKLSENSLRYTIIKAFAKVGLKVTPHQLRHTYATELLNNGARIA 239

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
           ++    G  ++   + YTK  + +++
Sbjct: 240 DVSELLGHASMATTQIYTKLGNALKM 265


>gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
 gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum
           Bf]
          Length = 355

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 108/360 (30%), Gaps = 37/360 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRK 66
           + +++ +     Y      G + +              +A+  S  + E        P  
Sbjct: 6   LIRKKDKG--YQYIITYKVGNKWKTKSKQGFKKRQDAQTAMDKSLAELEKYIKNNIDPSM 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T K     Y +         N+ ++F++  +       + +  KI+   I+  V++ 
Sbjct: 64  SEITFKQFTDMYLEHMKIYRTT-NTILAFKTVLNHF-TLLSNKELDKISNIDIQRIVDNL 121

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQF 182
             T   PS+  +++  +  +FK A+    +    P  +++  K K +  +    E+ +  
Sbjct: 122 TLTGLNPSTIQEYIRKLNTIFKSAMDDYNIIDKLPTKNLKFNKSKQQVNKRALNENEENK 181

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                + ++  L     L  GLR  +        +     +I   K              
Sbjct: 182 LLEDFKSNKYYLVILLGLKCGLRLGEILGLTWSDIDEVNKTISINKQWKQVNPTKYNFGE 241

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                   T+ +    +  L                +  N++             G N +
Sbjct: 242 LKSKNSNRTIPISQSTLDELKKYKKIVNIDNRLFKFKNTNSSCI--CLNRLLKLKGYNIT 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R   AT     G     +    G       +TY+   D         ++ + ++++
Sbjct: 300 VHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVND------DMMKKATKIIEN 353


>gi|66046081|ref|YP_235922.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256788|gb|AAY37884.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 344

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 108/329 (32%), Gaps = 20/329 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K + R G + YY+  G   R  +P   +        + L     K    ++  ++  
Sbjct: 13  RLRKRKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           T  ++  +Y         +  ++        Q+++   D       I  +H+   +  R 
Sbjct: 69  TFAYVAEKYMIEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127

Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            T P  A +    +  ++ +A+                K   E  R    ED      + 
Sbjct: 128 KTAPVRANREKALLSAIWNFAM--SAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYS 185

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A +    +G R +D+ +   + +++    ++  KT     +E+      ++ 
Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVVID 245

Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
                KE   I        ++ Q M ++     F A    AGV K       +R  + T 
Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRERFDAAREAAGVEKGEFQMRDLRAKAGTD 305

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            A++     +     G  TV   E Y + 
Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|94311976|ref|YP_585186.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|160898186|ref|YP_001563768.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|93355828|gb|ABF09917.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
 gi|160363770|gb|ABX35383.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 415

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           L P    + T  G+      Y    G  R+  L    E T   A   A       R   +
Sbjct: 43  LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 102

Query: 63  SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
               K       T+K L +++ +         +++  +++  D+ I+   G    + +  
Sbjct: 103 PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 162

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++   H P+ A +  + MR +F  A    +           P            
Sbjct: 163 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLIS 222

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         E  +          LA         R S+        +  +   +    
Sbjct: 223 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 282

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282
           + T    +        L                 ++  + +   ++   +      AG  
Sbjct: 283 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 342

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340
           +   HG+R  SAT  A++G      MA    KTV     Y    D    +     + R  
Sbjct: 343 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 402

Query: 341 SVVDSDDP 348
           ++ ++  P
Sbjct: 403 TITEAQRP 410


>gi|28867763|ref|NP_790382.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850998|gb|AAO54077.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 413

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 100/351 (28%), Gaps = 30/351 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK     +             +         +  YI     +  TL+  
Sbjct: 53  KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 111

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
           +  Y            ++    S   ++I   G +    ++   I    + R + PS   
Sbjct: 112 LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSADIIAGYRDKRLNEPSRGG 170

Query: 132 -----SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +    L  +  L+  A+++  +    NP L++ +P       R  + E+ +   +
Sbjct: 171 TISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGRDRRLSPEEERLLLA 230

Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232
             +  S P L +     L +G+R S+        +                 +T      
Sbjct: 231 AVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDGSRTVPLSKR 290

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            T          +         F       K     F+  +     K  +     H +R 
Sbjct: 291 ATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQLKKKLDLPDFRFHDLRH 350

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            + +   + G +  E+ A  G K++   + YT              R+  +
Sbjct: 351 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVARLDRI 396


>gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168]
 gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168]
          Length = 391

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 104/361 (28%), Gaps = 51/361 (14%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           + G  +R       +          +T    K             L   +  + +     
Sbjct: 29  QTGKQKRKYFYGKTKKEVAKK----MTELKMKLFNGTYSEPSEMKLIDWLHRWIEGRK-S 83

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAI 134
           +LA ++  +++   +  +    G+   + +  + ++  +  +            +P +  
Sbjct: 84  TLAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVK 143

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              +++    + AV++  +  N C +VE PK++ E       +         +   +  +
Sbjct: 144 YIYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFI 203

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------- 232
                L +G+R  +      + +      I+ ++                          
Sbjct: 204 LHYLALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPIT 263

Query: 233 --------ITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN 283
                               L      K      N     ++       FK    + G+ 
Sbjct: 264 DNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETGLP 323

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
               H +R   AT+  +A      L    G  ++    +TY+   +   + I+  R++ +
Sbjct: 324 EIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEE--MLIEAERKMET 381

Query: 342 V 342
           +
Sbjct: 382 M 382


>gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 414

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 28/313 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
               +      ++   T   L  +Y          +    +   +E              
Sbjct: 92  LERIKSEYLGKKEDVETFMTLFEKYNNDVRQQVGYTKTPATLQKYEVCRKHFQAFLKTKY 151

Query: 108 ---DFDYRKITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   I       +       ++A + L +++ +  +      +  +P  +
Sbjct: 152 RRSDLKIAELTVLVIHDFELYLRTAAKQKQNTANKTLKTLKTIVLFGKSIGVINHDPFRN 211

Query: 161 VER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            +    P  +         +   +  S        R  F F  ++GL   D      +H+
Sbjct: 212 HQFTSTPVDRGFLSEEEVMDIATKDLSDIPRLELVRDIFVFSCFTGLAYIDVANLKSEHI 271

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW 272
                                +  + LL +          +T   +     ++  + + +
Sbjct: 272 VTLDGKEWIMT---RRQKTKVESNVLLLEVPKSIIAKYEGQTAREDMLFPILSNQKMNSY 328

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI- 329
            K  A   G+ K  + H  R   AT+    G     +    G   +   + Y +  ++  
Sbjct: 329 LKEIADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388

Query: 330 -RLGIKNSRRISS 341
                + + ++  
Sbjct: 389 EHDMEQFADKLGK 401


>gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 323

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 110/323 (34%), Gaps = 24/323 (7%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y+    G  +R   P  + F+ +   A           +      +  + +I+ Y+ S  
Sbjct: 2   YYAWRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRAVITAYKSSHD 51

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLT 138
           +  LA +++ ++  + D+I +K GD    +          IR         P +A   + 
Sbjct: 52  YQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQ 111

Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +  +  +AV     ++ NPC  +++  +       WT +D+ + K+      +   A +
Sbjct: 112 VLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKC--SPEVAWAVD 169

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETF 255
              ++GLR  D  R    H+ +N   +     +      + L      LL   P      
Sbjct: 170 LAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIV 229

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYG 312
             N  K       F   F     +A +   +   H  R  +AT    AG +   +    G
Sbjct: 230 LTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMG 289

Query: 313 WKTVDQAETYTKGADRIRLGIKN 335
           W+         +   R    I+ 
Sbjct: 290 WEEETVRNIIRRYVSR-TAAIEA 311


>gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 278

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 73/255 (28%), Gaps = 28/255 (10%)

Query: 97  SYFDQIIRKS-----GDFD---YRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145
                +I        G+ +    + ++   +RS + SR     +A    + L+ +R  FK
Sbjct: 2   RDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFK 61

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFE 197
           +      +      S+ RP ++    +  +  +++                  +      
Sbjct: 62  YIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIV 121

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            L  +GLR S++    V  + N      T K      V +     K +            
Sbjct: 122 LLYGTGLRISEALNLRVSDINNESLI-VTGKGDKQRQVFILPVVKKCIQEYIKACPYLDE 180

Query: 258 NNDKQ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
                      K+  T  +   +       +    S H  R   AT           +  
Sbjct: 181 AQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQ 240

Query: 310 TYGWKTVDQAETYTK 324
             G  +++  + YT 
Sbjct: 241 LLGHSSLETTQIYTH 255


>gi|303245432|ref|ZP_07331716.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493281|gb|EFL53143.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 89/316 (28%), Gaps = 11/316 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  R             ++       +  +     K +++++   +  TL   +
Sbjct: 6   KRGNLQWEARIRKRGYPTTCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAEGYTLGECL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y++          S I       +  R  G      I +K I      R+    SA  
Sbjct: 66  DRYKEEYLPRLKNPQSEIYRADRLKK--RALGLRIMATIRSKDIADYRREREKEGVSANT 123

Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF +A     +    NP     +PK      R   + + ++         
Sbjct: 124 IRLELALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLEQGEEEKLFEAIGNDF 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +     +  L + +R  +  +   + +     +    +     T        K + +   
Sbjct: 184 EFSAIIKIALETAMRRGEILKLTWKDVDLRNKA-VFLQDTKNGTCRTVPLSKKAIEVFQG 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELM 308
                              S        +AG+ +   H +R  + +   +       E+ 
Sbjct: 243 LHRHISGKVFPSCTVPQSLSKKMAKACQRAGLADLRFHDLRHEATSRFFEHTDLDVMEIK 302

Query: 309 ATYGWKTVDQAETYTK 324
           A  G K++     YT 
Sbjct: 303 AITGHKSLQMLARYTH 318


>gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4]
 gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4]
          Length = 386

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 45/375 (12%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49
           MT      + P  + +++  +G +  Y   +R G  ++  L                  +
Sbjct: 1   MTKKTTIQKEPVKLREKKLANGNVSLYLDIYRNGKRQKEYLKLYLIDATTPLEREQNRQT 60

Query: 50  ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSL---AVNSRISFESYF 99
             T    K + +   +    +           +  YRK          +  +  ++ S  
Sbjct: 61  LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEERHKNPESDGNWGNWRSCL 120

Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139
             +     +   ++ IT + I    +          ++  P          S    ++  
Sbjct: 121 RYLEIYCDEKTTFKDITPEFINGFKDFLNNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R     A  +  + +NP   +E  K         T E+++Q  +        + AF 
Sbjct: 181 NKLRACINQAYDERIIPVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F   +GLR SD  +     +Q      +          +               +     
Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPED 300

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                       S+  +  +  A +NK  + H  R   A +  D GA  + +    G K 
Sbjct: 301 LVFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360

Query: 316 VDQAETYTKGADRIR 330
           +   + Y K  D+ +
Sbjct: 361 LATTQIYAKVLDKNK 375


>gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
 gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222]
          Length = 305

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 81/282 (28%), Gaps = 27/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122
           L+++I +Y +      LA  +  S+    ++  R         +   IT   I       
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVVEKEIINIEDITPPVIKGYLLYC 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172
            + R +T  +    L  ++  F++   +            +         +     +  +
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231
                   + +       +       L  +G+R  +        +     +I    K   
Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283
            ++  L D   + L    +  E ++         ++    +      + F   +++ G  
Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMGFK 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH  R   A+    AG   + L        +   E Y   
Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 368

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 112/362 (30%), Gaps = 43/362 (11%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + ++ +     S+  +S   ++S     II   G     K+   HI+   +S  ++ 
Sbjct: 66  KDYLIQWLEIKKM-SVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQSALNSG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     +      AV+Q  +  NP      PK++   I+ WT+E+++QF     
Sbjct: 125 IANNTILFQHRILTAALNLAVKQNIIPRNPATLAVIPKKEKSSIQTWTEEEVKQFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +  N  ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAKNNSSKR 243

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKATK 279
           T+ +P   ++ L    +      +       +                  +  F      
Sbjct: 244 TIPIPLEVIEELKKCKLQVNKDKLRIGPAYHDLDLIICNKLGEVTTRTTFTRHFDKVIKN 303

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNS 336
           AG+ K   H  R   AT+    G     +    G   +      Y+    +     +K  
Sbjct: 304 AGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSHVLPNIQEDAVKAF 363

Query: 337 RR 338
            +
Sbjct: 364 AK 365


>gi|303231738|ref|ZP_07318461.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513687|gb|EFL55706.1| site-specific recombinase, phage integrase family [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 396

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 85/326 (26%), Gaps = 58/326 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-------- 122
           +   I E+  +    S+   +   ++     I +        ++    +++         
Sbjct: 70  INEWIKEWLTTYVKNSVRPATYKVYKVTLAPIQKAFQGRRLDQLDPTQLQNFFNDQLIHG 129

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +  +P +              A++      NP    + PK+      P ++ +   
Sbjct: 130 GHNQKGLSPYTVRNQRRYFAHCIDTALKLGLTTKNPVRLTKSPKQTKAENHPLSQYEAHN 189

Query: 182 -------FKSFWSEGSQPRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIFSIKT 226
                         G   RL     LY        +G+R  +        +  + +    
Sbjct: 190 LLQQAQDELEAAHSGPIDRLMTTSDLYIGVYIALETGMRLGEIMALRWGDIVLDSYITVQ 249

Query: 227 QKTGT----------------------------IITVELPDGFMKLLAMTPIGKETFFIN 258
           +                                       +   +LL             
Sbjct: 250 RSKSEIKEQNITLPKTGVGRKIQISQRLVNALTQHRAIQSNYKKELLGYYQDDHHIIGGL 309

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      S  FK  + +AG+++    H +R   AT+   AG     +    G  ++
Sbjct: 310 QGNGYHARHYSSRLFKKLSQRAGIHRRVRFHDLRHTHATLLLLAGVNPKIVQERLGHASI 369

Query: 317 DQA-ETYTKG--ADRIRLGIKNSRRI 339
           +   + Y+    AD+  + I    R+
Sbjct: 370 NVTLDIYSHVALADQA-VAINALDRL 394


>gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 298

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 94/294 (31%), Gaps = 28/294 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VES 125
           + ++ E+ +        + ++R ++      ++    D       ++   +RS      +
Sbjct: 2   EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLTFLADRGAGLDGLSLPLLRSWLSAGAA 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  +  ++++    WA R+  +A +P   ++ PK          ++      + 
Sbjct: 62  AGAARTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAMAA 121

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
              G         + RL  E L  +G+R S+ C   V  +      ++   K     TV 
Sbjct: 122 AKSGAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284
                   L           +  +        A    +  +   T             + 
Sbjct: 182 FGMPAADALRAWLDDGRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVSAVDGAPDM 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
             HG+R  +AT   + GA    +    G  ++   + YT  A  R+R   + + 
Sbjct: 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAH 295


>gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 316

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 83/274 (30%), Gaps = 31/274 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTPS----SAIQF 136
            L+  S  +++     ++               +  + +++              + +++
Sbjct: 27  GLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVEKQLDDDTYVKY 86

Query: 137 LTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQ 191
           ++++R    +   ++  +     + + +       I+  + +D++            G +
Sbjct: 87  ISALRSFVNYLHDEDLTSLTRDDIKLPKSHMDVSSIKALSVDDVRALLMAPDPSTPWGKR 146

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFMKL 244
            R     L  +G+R ++ C      L                 K      V +     +L
Sbjct: 147 DRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEILEVSIIGKGRKPRVVFVDAVAQRL 206

Query: 245 LAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +                + ++      +  K  A KAG+    + H +R   A
Sbjct: 207 LKEYLQLRTDENPALFVSFKGPTAEDRLTPRAIQMSIKKYAKKAGLKTIPTPHTMRHTFA 266

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                 GA    + A  G  ++   + YT+  DR
Sbjct: 267 VHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDR 300


>gi|228975030|ref|ZP_04135589.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784551|gb|EEM32571.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|326942751|gb|AEA18647.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 353

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K+  + G   +  R     G  ++++              + +         +     
Sbjct: 3   IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 53

Query: 67  KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              T + +   Y    +      ++N+  +  + ++ ++++ G      IT +H+     
Sbjct: 54  SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 111

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +++     +F T++  +F + ++   +  NP       +++++    + + +  + 
Sbjct: 112 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240
                +    +  F  L YSG R  +      + +       +I   K    +T      
Sbjct: 172 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 231

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282
             +++ +                + A                  T     F      A V
Sbjct: 232 SNRIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 291

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 292 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 335


>gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
 gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24]
          Length = 305

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 81/282 (28%), Gaps = 27/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122
           L+++I +Y +      LA  +  S+    ++  R         +   IT + I       
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYLLYC 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172
            + R +T  +    L  ++  F++   +            +         +     +  +
Sbjct: 64  SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKAIKVYSDEQIKQ 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231
                   + +       +       L  +G+R  +        +     +I    K   
Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283
            ++  L D   + L    +  E ++         ++    +      + F   + + G  
Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSLRMGFK 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH  R   A+    AG   + L        +   E Y   
Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
 gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 93/276 (33%), Gaps = 21/276 (7%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV---ESRK 127
           ++ EY         L+ N+  S+     + +    + +     +    I S +   E   
Sbjct: 3   VLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYLNERNINLSDVVENDIISYLIELEKED 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S  + ++S++    +    + +  +P  ++++PK K   +   T++++ +   F  
Sbjct: 63  ISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEVDKLLKFED 122

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +    + +  FE L  +G++ ++     ++ +   I  I          + L +    
Sbjct: 123 LSTPKRIRDKAIFEILYGTGIKVTELIDMNLEDVDLEIDYIYCGSGKNQRVIPLCETTEF 182

Query: 244 LLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            L                         Q+          K  A +A +NK+     +R  
Sbjct: 183 YLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEADINKNINPTVLRNS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A    + GA    +    G   +   + Y K  D+
Sbjct: 243 FAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDK 278


>gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 419

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 92/328 (28%), Gaps = 21/328 (6%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           R             A               +   K           Y +  ++   A   
Sbjct: 33  RKEHRDVLAEAQDKARQIEKDLVRNPAGVFDRKVKAADDFIEFYRRYAEKDNYPKYA--- 89

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWA 147
             +      +     G   +  + +  +             + ++A  +LTS++ + + A
Sbjct: 90  --NVLPILRRFS--LGVIHFASLNSAWLERFKFYLLSLESISQNTAGGYLTSVKTVLRQA 145

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            R+ Y+  +    V   K+          E ++      S     + AF F  +SGLR S
Sbjct: 146 FREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEALHKAKSNNEMIKQAFLFACFSGLRLS 205

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINND 260
           D      + +     +   Q                     ++ +            +  
Sbjct: 206 DVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSEQAATILQEVRALHAEYAPSGSDKV 265

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +  + +   +    +AG+      H  R   AT++  AG   + +    G + +  
Sbjct: 266 FILPSRERIAQVLEVWGIRAGLPFKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKT 325

Query: 319 AETYTKGADRIRL-GIKNSRRISSVVDS 345
            + Y +  D  +L  ++    +   + +
Sbjct: 326 TQIYGRIVDSKKLDAVQALPVLQGAIGN 353


>gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59]
          Length = 309

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPTFSESGHLARQVFARELKGLAARAGLA 247

Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
 gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117]
          Length = 334

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 98/313 (31%), Gaps = 46/313 (14%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVES 125
               +++Y +        + N+  +++     +       +GD   ++I+ + +R  +  
Sbjct: 19  FSEPVADYLEYLQRERGRSENTLRAYDVDLRNLGQFLNEHAGDPALKQISVQMLRDWLAY 78

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +    ++  + +++++  F WA++   V  +P L +  PK++           + + 
Sbjct: 79  LHESEVSRTTLARRISAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRL 138

Query: 183 K------------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                       +   + R+  E L  SGLR S+     +  + 
Sbjct: 139 LSEHAGLTEENEAARQKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDID 198

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267
               +++   K      V       +++                +          ++N  
Sbjct: 199 FERRTLRVLGKGNKERMVPFGKPAERVIIEWIRSYRRVVAAEQAEDALLVGVRGSRLNVR 258

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
           Q      +     G       H +R   AT   D GA    +    G  ++   + YT  
Sbjct: 259 QAREVIASALRSLGDTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHV 318

Query: 325 GADRIRLGIKNSR 337
             DR+R   + + 
Sbjct: 319 SVDRLRQSYRQAH 331


>gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72]
          Length = 331

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127
           +       + + ++  ++++   Q           G          +T     + +E  K
Sbjct: 30  WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
             P SA   L+++R+ +++ ++Q  +A+NP    +      +          +    +  
Sbjct: 89  IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229
            +  +      + +  FE +  SGLR S+     +  +  +I  ++              
Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              +         + L      K  F       +++     +  K  AT AG+  +   H
Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   A+    +      +    G + +   + YT  
Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306


>gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 382

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 19/287 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124
           L  L S+Y               + E   +   I   GD     ++ +      I     
Sbjct: 96  LSELGSKYLAHMKASGRTEKHIRNIEHLVNHVFIPVLGDKPVDSLSYQENMIPFILHFQG 155

Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               T       +  ++   +  +F + +   + ++NP    ++PK +   ++  T +D 
Sbjct: 156 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKIWKKPKVQPWDMK-LTLDDA 214

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237
           ++         +  +   F L +    S+      + +     +++    KT +  TV +
Sbjct: 215 KKIMVNAEPHLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKSYRTVPI 274

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
              F+K L       +T ++     + N T     FK    +AG+      + +R   AT
Sbjct: 275 NPEFLKRLEKEQAESQTGYVIEYMGR-NLTTIRKAFKNACKRAGITYQTRMYDLRHLFAT 333

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGIKNSRRIS 340
                GA    +    G  TV     TY    +      +     + 
Sbjct: 334 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEKERAVNLLPALE 380


>gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 423

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 110/378 (29%), Gaps = 46/378 (12%)

Query: 6   RLPPFVTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           R P  + +   ++GK      Y      ++                + +  +        
Sbjct: 35  RYPIGLKETIDKNGKPCCKTVYKSIYGKKKTGPGGVM---------AEMRNALAALGKGT 85

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRS 121
                  TL     E+ ++     L  N+R+ +E+   ++ R    D   + ++ + I+ 
Sbjct: 86  YIDPSDKTLIVWCQEWYETYKEPKLKTNTRLKYETSITRLKRYSIADMQLKNLSLELIQK 145

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRP 173
                     +  +     + +    + A     +  NP   V  P+   +       + 
Sbjct: 146 DYNRMAKDGLSEETIKATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKA 205

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
                +  F       S+  +   F+L +GLR  ++       +      IK  KT    
Sbjct: 206 LNDTQLDAFLYQIGRRSKYFMYAFFMLNTGLRPGEALALTRSDIDFTTNKIKVTKTYIEK 265

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIW 272
                       +   V +P   + LL    + +      +         + +       
Sbjct: 266 LKKVQNSTKTASSRRKVPIPSEMISLLKEYMLQQPKKEPTDPLFQTATGKRPSQGYLRKR 325

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           FK     AG    + H +R   A+           +    G K V    + Y    D   
Sbjct: 326 FKYAGASAGCEWVNLHTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVHFIDN-- 383

Query: 331 LGIKNSRRISSVVDSDDP 348
           +  ++ + ++S +  + P
Sbjct: 384 IVEESVQVLNSDIPENLP 401


>gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1]
 gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1]
          Length = 434

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 106/373 (28%), Gaps = 42/373 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +      +HG+     R   G+   L            ++ +  +    +      +   
Sbjct: 54  YGVNYTDKHGRKT---RFTIGKHGTLTTDEARKAAKKRLAEIVVNDANPQQQRQKDRNEL 110

Query: 70  TLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L +EY  S  +   A  ++      + + I+   G     ++  + +R        
Sbjct: 111 TVSELFAEYFLSEQFREKAPLTQRGDQGRFGNHILPLIGRLRLSEVNAEKVRKMRREIAE 170

Query: 129 TPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +          +A   +  +  ++ WA +         +               T   
Sbjct: 171 GKTATSTVKGGEGTARMAVRLLSAVYGWACKNV---EGFAIDNPCRGVNLGRDGERTAIL 227

Query: 179 MQQFKSFWSEGSQPRL------------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               +      +  RL                L  +G R S+ C    +++     +I  
Sbjct: 228 KDAEEYRRLFEALDRLTATRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVL 287

Query: 227 QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
             T      +       LL                + +    ++   +    S  +    
Sbjct: 288 APTEHKTGRKTGAKKTILLPAPALAIVAKRERGQPDDYVFRGEQGSGHTWLNSKIWVRIR 347

Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGI 333
            +A +      H +R   AT+ A  GA A +LM   G   +     Y   A+  + R   
Sbjct: 348 REANLPDGITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQRRFLE 407

Query: 334 KNSRRISSVVDSD 346
           +++  IS+ ++  
Sbjct: 408 QHTAGISAALEGR 420


>gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 306

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 97/306 (31%), Gaps = 41/306 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
           I  + +        + ++  ++     D     +      +   + +             
Sbjct: 5   IEAFLEMMAVERDASPHTLSAYGRDLADAEAALAEAGGLMQADQEALEVWFADLSRRGLS 64

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            ++A +  +S R  +++A+ + +   +P   ++ PK+     +  +++++ +  +  +  
Sbjct: 65  AATAARRRSSARQFYRFALAEGWRTDDPSRRLDAPKQGRPLPKLLSRDEIDRLLAAAAAR 124

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
               G +     E    SGLR S+     V  ++ +    I   K G      L     +
Sbjct: 125 DAAGGLRLVALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERLAPLNTAARE 184

Query: 244 LLAMT------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            +                     P     F  +     +   +F+      A  AG++  
Sbjct: 185 AIKAWLTARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEAAPVAGIDPA 244

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             S H +R   AT   + GA    +    G   +   + YT            + R++ V
Sbjct: 245 RVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHV---------ATDRLAQV 295

Query: 343 VDSDDP 348
           V  + P
Sbjct: 296 VQQNHP 301


>gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
 gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium
           botulinum BKT015925]
          Length = 357

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 97/342 (28%), Gaps = 31/342 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---- 67
            +++ +  + I  ++   G+  +       T   A  +A       +    +        
Sbjct: 7   YRQKDKGWQFIISYKDNMGKWKQKSKQGFKTKKDAKPAAEKMLKELKNTTKNVPVNNDLI 66

Query: 68  PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L + Y      +     ++  S+++ F +      +   ++I    I+S V+  
Sbjct: 67  KVTFNQLTTIYLDHITLYKEY--HTVKSYKNCFSKFKD-LNNKRIKEIKKHDIQSIVDKL 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  S+  +++  + + F +       +   P ++++ PK K    +    +     
Sbjct: 124 LKEHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNIKIPKEKEYSNKIALTKKQLNK 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------- 231
                + ++  +       +G+R  +        +     SI   K              
Sbjct: 184 LLKELQDNKYYMVAFIAANTGMRLGEVLGLTWDSIDFKRSSITVNKQWKVLKTRKSGFGS 243

Query: 232 ------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                   T+ L    +K L        T   N       ++            AG+  +
Sbjct: 244 LKSKNSYRTIPLSPNTLKELKNYKKNNPTDINNRVTPFNASSIDKYLNPKLKELAGI--T 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R   AT     G          G       + Y+   D
Sbjct: 302 MHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTD 343


>gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           A/HAR-13]
 gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           434/Bu]
 gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70]
 gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s]
 gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           D(s)2923]
 gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           L2tet1]
 gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC
 gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC
 gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC
 gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC
 gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia
           trachomatis A/HAR-13]
 gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu]
 gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2]
 gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/150]
 gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9768]
 gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11222]
 gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/11074]
 gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           E/11023]
 gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           G/9301]
          Length = 315

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110
           T+    +  Y K+    SL  ++  ++      +                          
Sbjct: 3   TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 59

Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +   T  +IR  +  +    H+  +  + L++++   ++ V+ + +  NP   +  P
Sbjct: 60  PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGP 119

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +   E   P T E +    +        G + R   E    SGLR S+        +   
Sbjct: 120 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 179

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270
                   K      V +    ++ L                +  F+N   ++++     
Sbjct: 180 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 239

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             F+    K G++   + H +R   AT   + G     +    G  +++    YT  + +
Sbjct: 240 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 299

Query: 329 IR 330
           ++
Sbjct: 300 LK 301


>gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
 gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145]
          Length = 302

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 87/285 (30%), Gaps = 25/285 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRS---G 122
           L  +   + +       LA  +  +++       +Q+  + G     ++T         G
Sbjct: 3   LHEIQHRWLQQLEGERGLAQLTIKNYQRLTGIDIEQL-DRQGVEHAHQLTRSIFERLLVG 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDM 179
                    S    L++ R   ++ +  +++  +P   ++ PK      +     +   +
Sbjct: 62  WRRDGLGERSIALKLSAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLDVDSISHL 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            +         +     E L  SGLR ++     +  +      ++    G+        
Sbjct: 122 LELPLDDELAIRDSAMMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVGKGSKTRIVPVG 181

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              I        ++   +    +   FI+   Q+++             + GV  N   H
Sbjct: 182 KIAIKAIQRWLKVRANWLAMRPEVALFISQRNQRISQRTVQQRLNFWGKQQGVVGNLHPH 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            +R   A+   ++      +    G   +   + YT   D  RL 
Sbjct: 242 KLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTH-LDFKRLA 285


>gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 323

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 82/290 (28%), Gaps = 41/290 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKI------TTKHIRSGVESR---KHTP 130
             L+  +  ++ +   +++        GD    +           IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           ++  + + S R    WA  +  V  +   ++   +         +  D            
Sbjct: 86  ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        +   A E L  +G+R S+     + ++  +  +++          V 
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283
                   L           +N +K  +N                         +AGV  
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAGVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              HG+R  +AT   D GA    +    G  ++   + YT  +      +
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315


>gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
 gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50]
 gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50]
          Length = 351

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 L  +  K E   +  K+  + +  +  +  +      +  S   +++  + ++ 
Sbjct: 47  EKLQEVLRYTLAKYEVTENQNKEKYSEQNYVELFLSAKRIEGCSEKSLKYYKATIEAMLD 106

Query: 105 KSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           +    D + I T  IR       E +K +  +       +   F W   ++Y+  +P   
Sbjct: 107 EL-QKDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRR 165

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + R K  T     ++ E ++  +   +E  +     + L  +G+R  +        +  N
Sbjct: 166 IHRVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRDDIDFN 224

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273
                          V         L      +            +           +  
Sbjct: 225 ERECVVFGKGSKERVVYFDARTKIHLQNYLESRRDNNPALFVSLKSPHKRLKIGGVEVRL 284

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    + G+NK   H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 285 REFGKQLGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 335


>gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 326

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 36/334 (10%)

Query: 1   MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  +   LPP +     +HG    Y+    G+  RL   ++   + AY   + G    
Sbjct: 1   MRPRKKDRHLPPCMY---MKHG---AYYLVRKGKWERLDKDYQGALL-AYAKIMGGKGQG 53

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                           LI +   +     LA N+   +E+  +++ +   +F+ R++  +
Sbjct: 54  EMPR------------LIDDALDAMR-KRLAENTIKQYEAAAEKLKKYLAEFEPRQVLPR 100

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+ +       TP+ A + ++ +R++F +A+ Q+ V  NPC  ++R   K        +E
Sbjct: 101 HVAALKLHMSDTPNMANRVISFLRMVFNYALEQQIVDSNPCTGIKRHTEKKRDRYITDEE 160

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                 +        R   E    +G R  D     +  +     +   QKTG  + V +
Sbjct: 161 FAAICDAA---SPYIRSILEMCYLTGQRIGDVLAIKLSDISEKGIAFDQQKTGAKLIVGM 217

Query: 238 PDG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                      K +     G   F      + ++       FK    KA V   + H +R
Sbjct: 218 TPDLEQLIARTKAIPRKVRGLTLFCTRGGGKPVSYETVKDAFKKACEKAKVTGATIHDLR 277

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S T + D G          G       E Y +
Sbjct: 278 AKSLTDTDDQGND---AQKLGGHTNAKMTERYLR 308


>gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
 gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326]
          Length = 320

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 80/304 (26%), Gaps = 54/304 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I EY +S      A  +  ++  +  + I  SG     K+    +   +         A 
Sbjct: 9   IKEYMQS---RRYAPKTIQAYLLWITKFIAYSGMQHPSKLKEHEVEQFLTYLAVEEKVAA 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +          +  R+ +        ++  K   +   P      +  +       + +L
Sbjct: 66  KTQALALNAINFLYREYFRTPLSVE-MKFQKSLLDRKLPVVLNKQEMRRFVQHIDPRYKL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------------- 227
               L  SGLR  +  R  +Q +  +  +++                             
Sbjct: 125 HIMLLYGSGLRVMECVRLRIQDVDFHYKALRIWQGKGGKNRVVTLADELLPLLKQQQSVA 184

Query: 228 --KTGTIITVE-----------LPDGFMKLLAMTPIGKETFF--------INNDKQKMNA 266
                  I                      L                   +   +  +N 
Sbjct: 185 LAYYNKDIHSPGYEGVHLSNSLQRKYPGAELDFNWHFMFPSHKLSIDPESMGWKRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           T      K  A  AG++K  + H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 TALQRAVKRSAQDAGIDKNVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTH 304

Query: 325 GADR 328
             +R
Sbjct: 305 VIER 308


>gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH]
 gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH]
          Length = 269

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 95/259 (36%), Gaps = 11/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+++       + + N+  ++E+  ++      + +   I     R  +        +  
Sbjct: 9   INKFLNFVK-KTKSHNTYKTYETVLNE-AINFIEIENNIINITPYRLHIAELNKK--TIA 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + ++++R  F++   +        +  E  K      +P + E +++     +      L
Sbjct: 65  KKVSALRSFFEFL--ETEGHKFKIIGDEHIKVPKTLPKPVSMEHIKKALKSATMD--EYL 120

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGK 252
           A   +   GLR S++    +  ++ +   I+ +       + +       +        K
Sbjct: 121 AIITIFSLGLRISEAAGITLSDIKGDWIEIRGKGA-KTRLLPVHPKLKDFINKYLEIHPK 179

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
           + +    +   + A +     +    K G++ + H +R   AT     GA  +++    G
Sbjct: 180 KEYLFEKEGVPLGADKIRYLIQRAFKKHGIHVTPHQLRHSFATYMLQNGARINDVSELLG 239

Query: 313 WKTVDQAETYTKGADRIRL 331
            + +   + YTK ++ ++L
Sbjct: 240 HEFISTTQIYTKLSNSLKL 258


>gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
 gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus
           parasuis SH0165]
          Length = 261

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 13/227 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
               T + I S    +  +  S    L ++R    + V+Q  + +NP L ++ PK     
Sbjct: 13  LDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHL 72

Query: 171 IRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
            +    E + Q  +         +     E +  SGLR S+     +  +      ++  
Sbjct: 73  PKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLL 132

Query: 227 QKTGTIITVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            K      V +    +  +                 F+N    +++     +  K    K
Sbjct: 133 GKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQK 192

Query: 280 AGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             ++     H +R   AT   +A      +    G  ++   + YT 
Sbjct: 193 QALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239


>gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 297

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 97/285 (34%), Gaps = 24/285 (8%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122
           L+ LI ++     +G   ++N+  SF+    Q+              D +++  +     
Sbjct: 6   LEKLIKDFIYFEEFGDGKSLNTIKSFKKDLGQLRDYLSKKENINNPKDIKEMALRGFLVE 65

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++       S  + ++S+R  FK+   Q Y+  NP + +  P  K +     TKE++ + 
Sbjct: 66  LQKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRI 125

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +         G + RL  E L  SG+R S+    G          ++         V   
Sbjct: 126 REVIDIEKTNGIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTGGKQPRIVFFS 185

Query: 239 DGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNK--SA 286
           +   +        K+  +                +++        +  A KA + K  S 
Sbjct: 186 ERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQKEISP 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H  R          G     L    G  +V+  + Y +  ++ ++
Sbjct: 246 HTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKI 290


>gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
 gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726]
          Length = 305

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 22/278 (7%)

Query: 72  KWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127
              I ++     H    A  +   + +    +        DF+   +  + + + V   K
Sbjct: 18  DEAIEDFADFQLHVKGRAEATVRGYRADLKNLAQEIDTFADFNLNNL-RQWLGNAVAEGK 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182
              + A +   S++    WA R+ Y+  +    +  PK           +          
Sbjct: 77  ARATLARRT-ASVKAFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV 135

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
               +   +     E L  +G+R ++  R  ++ +     + +          V      
Sbjct: 136 SVDEAHFQRDSAILELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAA 195

Query: 242 MKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
              L     G        + Q         +++  Q        AT  G    + HGVR 
Sbjct: 196 TDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +AT   + GA    +    G  ++   + YT  + + 
Sbjct: 256 LAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR 293


>gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 98/362 (27%), Gaps = 30/362 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MMGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLKLAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFD 110
                + +          Y  S     L        +   ++              G   
Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPVYEFGIKP 166

Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              IT   +   VE  +       A       + + ++A+  E +  +PC  V     + 
Sbjct: 167 -DLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQ 225

Query: 169 EGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              +      +        + +E    R AF   LY GLR  D      +++      +K
Sbjct: 226 ILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNRLLK 285

Query: 226 TQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            ++  T          + L   L            ++     +    S   K    +AG+
Sbjct: 286 FEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCSKSVKRWIKRAGI 345

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           NK  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    + 
Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLP 403

Query: 341 SV 342
            +
Sbjct: 404 EL 405


>gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
 gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno]
          Length = 308

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 85/293 (29%), Gaps = 31/293 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRK---HTPSSAI 134
             ++++  +++       +           +    +   + I+  +        +  S  
Sbjct: 15  KYSIHTVEAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMSFRSIN 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKSFWSE 188
           + L++++  + +  + + + ++P        +  +  +         K           +
Sbjct: 75  RKLSALKTYYTFLKKTKQIEVSPFEKGIFLLKTEKRQKLPFSEAEIEKVLSYFSSKSSFD 134

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
             + R   E L  +G+R S+     +  +         + K      + +     + L  
Sbjct: 135 EVRDRAVIEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYIPIIPELEETLKE 194

Query: 248 T-----PIGKETFFINNDKQKMNATQFSIWFKAK------ATKAGVNKSAHGVRKFSATI 296
                  +  E         K     +S            A     + S H +R   A+ 
Sbjct: 195 YLKLREEVANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDVSPHVLRHSFASH 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDD 347
             D GA  + +    G  ++   + YT    A+  +   K   R     + D+
Sbjct: 255 LLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADRKEEDDN 307


>gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 89/310 (28%), Gaps = 47/310 (15%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI 119
            T   L   +          +  +  ++    D+ +   G             +++   +
Sbjct: 1   MTGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADL 60

Query: 120 RSGVESRKHTPSSAIQF------------------LTSMRVLFKWAVRQEYVAINPCLSV 161
           R+ +        +  Q                   +++MR  +++  R+  V       +
Sbjct: 61  RAWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLL 120

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P+ K+   RP ++           +        ++    F  L   GLR S++    V
Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180

Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268
           + L +        +   K G    V +     ++L            +            
Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240

Query: 269 ----FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    +A    AG+    + H +R   AT   + GA    +    G  ++   + Y
Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300

Query: 323 TKGADRIRLG 332
           T  AD  RL 
Sbjct: 301 T-LADEARLM 309


>gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1]
 gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1]
 gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1]
 gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 89/278 (32%), Gaps = 31/278 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127
           +       + + ++  ++++   Q           G          +T     + +E  K
Sbjct: 30  WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
             P SA   L+++R+ +++ ++Q  +A+NP    +      +          +    +  
Sbjct: 89  IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229
            +  +      + +  FE +  SGLR S+     +  +  +I  ++              
Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTRQVPVG 208

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              +         + L      K  F       +++     +  K  AT AG+  +   H
Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   A+    +      +    G + +   + YT  
Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306


>gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
          Length = 179

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SI 224
            +    +    G + R   E L  +G+R S+        +   +                
Sbjct: 1   MINMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 60

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +    + I         K L  +   ++  F+N+   K+         K     AG+NK
Sbjct: 61  ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINK 120

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             + H +R   AT   + GA    +    G   +   + YT
Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161


>gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27]
 gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27]
          Length = 349

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 59/299 (19%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140
            L+  +  ++ +     +   G+       ++ +  I        R    S+    + ++
Sbjct: 34  GLSDATLQTYRNSLGIYLSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAAL 93

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRL 194
           R   +  V +   A+NP   +++PK       P + +++                 + R 
Sbjct: 94  RTFHRHLVLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLRDRA 153

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDG 240
             E L  +G R S++    V                       +        +   L   
Sbjct: 154 LIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQHS 213

Query: 241 FMKLLAMTPIGKE--------------------------------TFFINNDKQKMNATQ 268
             KLLA + + +                                   F++N  +++   Q
Sbjct: 214 RPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQQ 273

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +     A + +  S H +R   AT    AGA    +    G  +++    YTK 
Sbjct: 274 AGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKV 332


>gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
 gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2]
          Length = 319

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 41/296 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKH 128
           I  +            N+  ++ S  + +         D+    T+ +R  +   + R  
Sbjct: 10  IDLFLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGF 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L+SMR LF++ + +     +P   +  PKR     +  +  D+ +      E
Sbjct: 70  KSSSVARRLSSMRHLFRFLLNERKRTDDPAAILSGPKRGRALPKVLSIADVDRLLGKARE 129

Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSC-------------------RAGVQH 216
                          +     E L  +GLR S+                         + 
Sbjct: 130 FADRDQPPLQKVRAMRLWCLLEVLYATGLRVSELVALPLSAARRDARMIVVRGKGDKERL 189

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
           +  N  S               +   +     P  K  F  + +   +    F+   K  
Sbjct: 190 VPLNQSSRDAMAAYLAAAGTAKEEKGEKAKSEPASKWLFPSSGESGHLTRQHFARDLKEL 249

Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A  AG++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 250 AVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
 gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165]
          Length = 395

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 93/307 (30%), Gaps = 46/307 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTK-------- 117
           I EY +        + N+  S+        R           D + + I  K        
Sbjct: 23  IVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPADTEIKDIDPKGLDTAFWG 82

Query: 118 ---------HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
                    ++        +  SS  + L S+   + + V Q   +  NP  S++ PK+ 
Sbjct: 83  SVSKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQD 142

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +  T E            S    +        L  G+R S+     +  +      
Sbjct: 143 KVLPKYLTAEQSMDLLESTQYQSDFPERDYCMVVLFLNCGMRLSELVGMDLGDIDLEQRQ 202

Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSI 271
           I+   K      V L +  ++ L +    + T                 K++++  +   
Sbjct: 203 IRLFGKGHKERMVYLNEACVEALQLYLAKRNTMEGLNPKEKAVFVTRRRKERISNRRVEQ 262

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328
                   AG+   S H +R  +AT+    G      L    G  +V   + YT   + +
Sbjct: 263 LVTGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322

Query: 329 IRLGIKN 335
           +R  I+ 
Sbjct: 323 VRAAIEQ 329


>gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 418

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +A   S  +        +          +        + +++ + ++E     +  
Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162

Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +GD     +I  +            P           ++A  + +  +   K A    Y
Sbjct: 163 FAGDTLLFSQIDNRLAEDFKFFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFVDGY 222

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + I+    ++  + +       T +++ +  +   E    + A  F   +GLR  D  + 
Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +       K   T             +                 +   N +  S  
Sbjct: 283 KWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPKQLVFEGLPNPSWISRP 342

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +A   KAG+  + S H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402

Query: 331 -LGIKNSR 337
                  +
Sbjct: 403 NKAANAIQ 410


>gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 352

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 101/344 (29%), Gaps = 18/344 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS---------PR 65
           R  +G     +R   G +    +        A                S           
Sbjct: 10  RKNNGTYYVAYRNAEGNQTTKTFGKGREGRRAAQKFDKQVKDHGPVPPSTPEAISEVVAV 69

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122
                L  L   Y  +       V +     S+    +I         +I    I +   
Sbjct: 70  ADKIYLDQLAQIYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPIDEIRYDEILTIVG 129

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
                H+P +  ++L+ ++ +F++ V+Q+ +  NP    ++ K      +         +
Sbjct: 130 KAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRDTKLTVADLMKIK 189

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +         +A+   + +G     + +        +   +   KT +   + +   F
Sbjct: 190 AVAAPHLAWAIEVAWNLGVRTGESELFALKWADVDWAQSTVKVFATKTQSARVIPISPEF 249

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
           M  L       +T ++     +    QF + F++   +A +      + +R   AT    
Sbjct: 250 MARLREMQGRAKTEYLIEYAGRP-VKQFRMSFRSACKRAEIPYHVVLYDIRHLFATTLLQ 308

Query: 300 AGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341
            G     +    G  +V     + Y    D  R  I     +++
Sbjct: 309 EGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 352


>gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
 gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702]
          Length = 357

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118
             ++EY        + +  + +++ +     +R                +     +  K+
Sbjct: 16  ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165
           I++                R +   +  +   S+R  +K+    + + A +P L++E P 
Sbjct: 76  IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135

Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K    +  T ++  Q               +        L  G+R S+     V     
Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDFVE 195

Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261
           NI   +                   V L +  +  +              ++  FI+   
Sbjct: 196 NIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   +       +    G+     S H +R  +AT+    G     L    G + ++ 
Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315

Query: 319 AETYTKGAD-RIRLGIK 334
            + YT   + ++R  I 
Sbjct: 316 TQIYTHVVNTQLRDAIN 332


>gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 51/367 (13%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   +  + +Y FR         G  R IR             +  +       +Y  
Sbjct: 4   IIKYTNKDNETLYKFRFYAGIDEITGKQRYIRRQGFTSLKAAKDELLKIEYLVSTNQYFK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
           S +        ++ E+       ++  ++    E    + +     D    KIT +H + 
Sbjct: 64  SVKSGK--FGDVLDEWLALHK-ETVKASTWQFIELRANNHVRPYFKDMYVDKITLRHCQD 120

Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            V    K  P + +  L+ ++    +A+R   +  NP L V +PK++            +
Sbjct: 121 FVNKTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDNYYNK 180

Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
                          +    F  L YSG+R  +        L     +I   KT      
Sbjct: 181 DELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLARTNN 240

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267
                          + L +  +++L M  + +    +      M++             
Sbjct: 241 GIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFI 300

Query: 268 ---QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                 +  K  A KAG++  + HG R   AT+   +G    ++ A  G   V      Y
Sbjct: 301 IVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIY 360

Query: 323 TKGADRI 329
           T      
Sbjct: 361 THAMKEK 367


>gi|307275392|ref|ZP_07556535.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
 gi|306508026|gb|EFM77153.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX2134]
          Length = 384

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 117/385 (30%), Gaps = 56/385 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 4   IKQYQKKNGEKAWYFKIYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 61  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 120

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+        Q  V        +      + I+ +T
Sbjct: 121 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 180

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 181 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 240

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 241 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSHIFTNEEN 300

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E+    G   +    
Sbjct: 301 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 360

Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344
           +TYT   +  +   K + ++S  + 
Sbjct: 361 DTYTHLTNDGK--EKTTEKLSKYIG 383


>gi|307290990|ref|ZP_07570879.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306497947|gb|EFM67475.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
          Length = 387

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 109/371 (29%), Gaps = 51/371 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + + + + G+  +YF+   G     ++ +               AL     + E     +
Sbjct: 4   IRQYQKKSGEKAWYFKTYLGIDPLTKKKKYTTKRGFKTQKEAKIALARLEMEIERNGIKQ 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T + +   + ++        +   +   +   I    G  +  KI T + +  V +
Sbjct: 64  SSSITFQEIAVMWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKIEIAKINTAYCQKVVNN 123

Query: 126 RKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPC--------------LSVERPKRKTE 169
                +S     FL  M  +FK+A+     A NP                  +      +
Sbjct: 124 WHTNGTSKQYPLFLNYMNKVFKFAISMGVTAENPTTNVIIPKNKETANPKDTKIKFYNKD 183

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
            ++ + +   QQ +       +    F  L +SG R  +        L            
Sbjct: 184 QLQKFLECIHQQPQENNYITLRDYTLFRLLAFSGCRIGELLALTWDDLNLKTGELQINKT 243

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                    S   +   +   + L    ++ L      ++ F       + +        
Sbjct: 244 VTKSDTYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLFKLGFTQPSRIFTNDSN 303

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +K    KA +     HG R   A++  +AGA   E+    G   +    
Sbjct: 304 EFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADHKEVQERLGHANIKTTL 363

Query: 320 ETYTKGADRIR 330
           +TYT   D  +
Sbjct: 364 DTYTHLTDDRK 374


>gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735]
 gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735]
          Length = 418

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 16/308 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +A   S  +        +          +        + +V+ + ++E     +  
Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSVSIQTNWERVHVLLKM 162

Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +GD     +I  +            P           ++A  + +  +   K A    Y
Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + I+    ++  + +       T +++ +  +   E    + A  F   +GLR  D  + 
Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +       K   T             +                 +   N +  S  
Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRS 342

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +A   KAG+  + S H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402

Query: 331 -LGIKNSR 337
                  +
Sbjct: 403 NKAANAIQ 410


>gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
 gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9]
          Length = 307

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 85/291 (29%), Gaps = 26/291 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAI 134
           ++        + +++  + +    + R         I    + S +   +   +   +  
Sbjct: 13  FKIWMKDRGYSKDTQQGYLNDIQLLCRSLRGKPLPSIRKIDVMSHLTDARERGAGDGARN 72

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + L+++R+ FK  +  E +  NP   V +    K        +  +           + R
Sbjct: 73  RALSAIRLFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLRSVEGNFRVR 132

Query: 194 LAFEFLL--YSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVELPDGFM 242
                 L  Y GLR S+  +  +Q          +       +       I   L     
Sbjct: 133 DIAMLALMSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRYIPLQPSIITLLKQCLQ 192

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--------AGVNKSAHGVRKFSA 294
           + +      +  FF++   ++++        +    +        A    SAH +R   A
Sbjct: 193 ERIPPKRKNEHPFFVSRLGRRISRRTVQFIVERTFEQFKQQHEHMAERKFSAHKLRHSFA 252

Query: 295 TISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           T            L    G   +   + YT   D+ +   +    +   + 
Sbjct: 253 TNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKK--KQAMAAVQPNLP 301


>gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 290

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 26/276 (9%)

Query: 78  YRKSAHWGSL-AVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVESRK 127
           + +   +    + ++  S+++  +Q  +                  + +  +    E   
Sbjct: 5   FLEFLQFEKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKAPMLRSWVVSMMEEGLN 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPWTKEDMQQF 182
             PSS  + + ++R  + +  +++++  +P   +   K + +       +       +  
Sbjct: 65  --PSSINRKIAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLFEEGV 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241
            S    G + R+  E L  SG+R S+     ++ L     +I+          V +    
Sbjct: 123 FSEDFSGLRDRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKERIVPVSTSL 182

Query: 242 MKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV-------NKSAHGVRKFS 293
            +LL      +      +      +       F  +  K  +        KS H +R   
Sbjct: 183 AQLLHKYTEQRAPEEDTDVLLLTDSNKAIYPVFVQRKVKQYLSAVTTLSQKSPHVLRHTY 242

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT   + GA  + +    G   +   + YT  +   
Sbjct: 243 ATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEK 278


>gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8]
          Length = 331

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 31/278 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127
           +       + + ++  ++++   Q           G          +T     + +E  K
Sbjct: 30  WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
             P SA   L+++R+ +++ ++Q  +A+NP    +      +          +    +  
Sbjct: 89  IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229
            +  +      + +  FE +  SGLR S+     +  +  +   ++              
Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQVPVG 208

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              +         + L      K  F       +++     +  K  AT AG+  +   H
Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   A+    +      +    G + +   + YT  
Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306


>gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4]
          Length = 311

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 85/277 (30%), Gaps = 18/277 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESR 126
             +L  L+ E+  +     LA  +  ++       +R  G    Y ++    IR    +R
Sbjct: 8   RLSLPDLLEEFLLARKADGLAELTLSTYRKIVTAFVRFCGPLVGYEELRRAAIRYF--AR 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182
             +P      L  ++  F W VR+ ++  NP   +        R         K  + Q 
Sbjct: 66  PSSPGYHNIKLRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVRHAPLEALKRLLAQP 125

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------T 231
                 G +        L +G R  +  R     L      +  +              +
Sbjct: 126 DRKTYAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVS 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
            +T +     ++        +   F +   + MN T ++   +    +AGV  + +G+R 
Sbjct: 186 PLTAQALARLLRARPSWWGEEVPLFASETGKPMNPTYWAERVREYCQRAGVKVTPYGLRH 245

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A     A      L    G + +     Y +    
Sbjct: 246 TFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQE 282


>gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB]
 gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB]
          Length = 421

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 99/317 (31%), Gaps = 23/317 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF- 99
            T       A      K+  +    K+  T      +Y K  ++  +A       E +  
Sbjct: 89  KTISDMREKARKQEEAKQAEVEKKEKESITFG----KYFKDTYFPDMAHKKSKDVEQFIY 144

Query: 100 -DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAI 155
              I    G      +T  H++   ++ + +  +          +  ++  A + + V  
Sbjct: 145 DKWICPLIGKLRINDLTDFHLKKIKKNMEDSGKAVRTIHYAFAIVSQVWNRARKDKIVQR 204

Query: 156 NP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG 213
           +     V+ P+   +  R  + ++     ++    S+         LY+G R  +     
Sbjct: 205 DCPTRDVKLPRIDNQKKRFLSPQEANDLLAYLKNKSRQLYELAYLSLYTGARFGELAGLT 264

Query: 214 VQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
            + +         +  K+G   TV + +G   L    P GK    I  D++       S 
Sbjct: 265 WRRINLKDGSIIFRNTKSGKDRTVFMTEGVKALFEAMPEGKADDLIFPDRKGKRLFSVSA 324

Query: 272 WFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            F       G+NK         + H +R   A+   + G     +    G         Y
Sbjct: 325 TFDRAIADLGLNKGVVDPRDKITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRY 384

Query: 323 TK-GADRIRLGIKNSRR 338
           +   AD IR  +    +
Sbjct: 385 SHPAADSIRQAMVGLEK 401


>gi|85059151|ref|YP_454853.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779671|dbj|BAE74448.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 338

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 108/338 (31%), Gaps = 39/338 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSP 64
           LPP V +     GK  Y F    G  I L             Y  A      ++      
Sbjct: 13  LPPRVYR-----GKTQYEFHPASGGSISLCPLDSLIPVVWAKYEQANNYRNERKN----- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 L+ LI+++  SA + +LA  ++  ++    +++   G      +  +HIR  ++
Sbjct: 63  ------LEHLINQFFLSADFMALAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMD 116

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A      +  +++W   +     NPC  V    +  E  R     D +   
Sbjct: 117 KRGTKSKTQANHEKRFLSRVYRWGYERGITKGNPCSGVR---QFKEEARDRYITDAEYEA 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +    +  R+A E       R SD        L ++   I   KTG        +   K
Sbjct: 174 LYSVAPATVRIAMEIAYLCCARQSDVLSLTKSQLLDDGIFICQGKTGKKQIKAWTERLKK 233

Query: 244 LLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289
           ++           +         +  +     F+  +     KA V       + + H +
Sbjct: 234 VIDLADSLPASQGVNSIYVLHQPNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    +       +  E  A  G K++ Q   Y +  +
Sbjct: 294 KAKGISDL---EGSLSEKQAISGHKSIGQTARYNRKTE 328


>gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 353

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 90/325 (27%), Gaps = 78/325 (24%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------- 183
             +   ++R  F WA        +P  ++  P   +      T+   +Q           
Sbjct: 74  MARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAVAT 133

Query: 184 -------------------------------------------SFWSEGSQPRLAFEFLL 200
                                                         +E  +     E L 
Sbjct: 134 NQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQRNAAILELLY 193

Query: 201 YSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            +G+R ++     +  +   N     T K      V       + L              
Sbjct: 194 ATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVLART 253

Query: 260 DKQKMNATQFSIWF-----------------KAKATKAGVN-KSAHGVRKFSATISADAG 301
               + +   +  F                    A +AGV   S H +R  +AT   D G
Sbjct: 254 ATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGG 313

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
           A   E+    G  ++   + YT  +
Sbjct: 314 ADLREVQEMLGHSSLKTTQRYTHVS 338


>gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7]
 gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
          Length = 330

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 31/278 (11%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR----KITTKHIRSGVESRK 127
           +       + + ++  ++++   Q           G          +T     + +E  K
Sbjct: 30  WCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLTR-FFSTRLEEEK 88

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDM 179
             P SA   L+++R+ +++ ++Q  +A+NP    +      +          +    +  
Sbjct: 89  IKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLDQKT 148

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------QKT 229
            +  +      + +  FE +  SGLR S+     +  +  +   ++              
Sbjct: 149 PEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKGNKTRQVPVG 208

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
              +         + L      K  F       +++     +  K  AT AG+  +   H
Sbjct: 209 KKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMAGIELNMYPH 268

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   A+    +      +    G + +   + YT  
Sbjct: 269 LLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHV 306


>gi|315173382|gb|EFU17399.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1346]
          Length = 387

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 109/371 (29%), Gaps = 51/371 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + + + + G+  +YF+   G     ++ +               AL     + E     +
Sbjct: 4   IRQYQKKSGEKAWYFKTYLGIDPLTKKKKYTTKRGFKTQKEAKIALARLEMEIERNGIKQ 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T + +   + ++        +   +   +   I    G  +  KI T + +  V +
Sbjct: 64  SSSITFQEIAVLWLENYKNTVKDSSYSRTNIIFNKHIFPHFGKIEIAKINTAYCQKIVNN 123

Query: 126 RKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPC--------------LSVERPKRKTE 169
                +S     FL  M  +FK+A+     A NP                  +      +
Sbjct: 124 WHTNGTSKQYPLFLNYMNKVFKFAINMGVTAENPTTNVIIPKNKETANPKDTKIKFYNKD 183

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
            ++ + +   QQ +       +    F  L +SG R  +        L            
Sbjct: 184 QLQKFLECIHQQPQENNYITIRDYTLFRLLSFSGCRIGELLALTWDDLNLETGELQINKT 243

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                    S   +   +   + L    ++ L      ++ F       + +        
Sbjct: 244 VTKSDKYYVSSTPKTKKSNRIIILDRITLECLKKWRSEQKKFLFKLGFTQPSRIFTNDSN 303

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +K    KA +     HG R   A++  +AGA   E+    G   +    
Sbjct: 304 EFTINQSVTERYKIYQKKANLPNIGLHGFRHTHASLLYNAGADHKEVQERLGHANIKTTL 363

Query: 320 ETYTKGADRIR 330
           +TYT   D  +
Sbjct: 364 DTYTHLTDDRK 374


>gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei
           6A8]
 gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8]
          Length = 306

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 35/301 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI--------------------------IR 104
               +  YR      + +  +  S+E                                + 
Sbjct: 6   FSDWLKSYRNYLRMRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENARLD 65

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            S D     IT   +      R + P +  + ++++   +++   Q  V  NP   +ERP
Sbjct: 66  TSVDVPPSMIT-DFLSFVSTMRTYKPKTFHRIISTLSSFYRFLSVQGAVVANPLAGIERP 124

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           + K + ++   K +         E  + +L    +  +G+R S+ C   V+ +  +  +I
Sbjct: 125 RIKQQEVKYL-KHNQVLRLIDSIEDPRDKLIVRTIYSTGVRVSELCNMNVEDIDFDEHTI 183

Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG 281
           + +     I  V + D  +  +      +     FI    + ++       FK  A  AG
Sbjct: 184 RIRGKGDKIRIVFVDDETLAGIQKFVGNRIAGPLFIGQQGKHISPRAIQHIFKHYAP-AG 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
           +  + H +R   A+           +    G  ++   E Y     D  R   +    +S
Sbjct: 243 I--TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERRQVYQQFFPLS 300

Query: 341 S 341
           S
Sbjct: 301 S 301


>gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
 gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD
 gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD
 gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A]
 gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038]
 gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292]
 gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870]
 gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68]
 gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196]
          Length = 309

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 33/289 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---K 127
            I  + +        A N+  S+    +    +      +  +  T HIR  +++     
Sbjct: 8   AIENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAETGHIRMTLDTMAAQG 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  + L+++R  F++   + +   +P   +  PK++    +  + E++ +      
Sbjct: 68  FAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLLDRAA 127

Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQ 227
                        +  +     E L  +GLR S+         R   + L       K +
Sbjct: 128 LEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKDR 187

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                            L  +  G +           +       F  +           
Sbjct: 188 MVPLSRKARDALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLA 247

Query: 286 -----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 248 ASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 296


>gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 280

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 18/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     +  +   D   +TT  +   +  +K    +P +   + + +R
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  +++ +   +            +     TK ++           + +     +  
Sbjct: 75  FFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKTEISAILDAT-PNLKHKAMIATMYS 129

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            GLR S+        +        I+  K+ +     L D  +++L              
Sbjct: 130 GGLRVSEVTHLHYDDISRTKKNIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRGIL 189

Query: 260 DKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
                     +      +F+  A +AG+  + S H +R   A+   ++G     + A  G
Sbjct: 190 FPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLG 249

Query: 313 WKTVDQAETYTKGADRIRLGI 333
            +     E Y   +++  LGI
Sbjct: 250 HRDPKSTEVYLHVSNKTLLGI 270


>gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 307

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 23/280 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124
           L +++ +   +    + +S  ++ +   + I   G+     I            IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180
            R+ +    SS  + ++ +R   ++       AI      +  P+  +        ++  
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +  S     ++       L  SGLR S++     + L          K   I  V L + 
Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +          F  +            +A       +      GV+   + H +R 
Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGVDNKATPHALRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+     GA    L    G  ++   + YT   D  RL
Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
 gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185]
 gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483]
 gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492]
          Length = 327

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI  +  +      +  S   + S  +  IRK  + + R ITT  +R+ +   + T  
Sbjct: 50  SELIDSFLSAKRVEGCSDKSMHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSG 108

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    
Sbjct: 109 ATKVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           EG +     + L  +G+R  +  +     +       I T K      V         L 
Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +                ++  +   I  +    +  + K   H  R+  AT++ D
Sbjct: 228 RYLAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G +++D    Y 
Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311


>gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 79/290 (27%), Gaps = 31/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +  H    A  +   +     Q+   +G     ++T +H+R         R     S   
Sbjct: 61  EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVTEQHVRQFFLHLKNDRNFAYGSLRV 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             + ++  F    ++++  I         +  T      T E + +     +   +  + 
Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253
           F  +   GLR +++    V  +      +   +        V LP   ++LL        
Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234

Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295
                                     M+ T      K        G   S H +R   AT
Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
              +AG     +    G  ++     Y    D       +   R+   + 
Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344


>gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4]
          Length = 383

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 117/365 (32%), Gaps = 58/365 (15%)

Query: 15  RTRHGKIIYYFR----------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           R R GK   Y+            G  ++  L          A ++       +  YI+  
Sbjct: 6   RKRVGKRGVYYDVVFDIGRDPVTGKRKQKWLRGFRTKKEAEAALAQAIAEVERGTYIDPE 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
           +    TL   + E+  +     L++ +   +    +  +I   G    RK++  H+   +
Sbjct: 66  K---VTLAEYLKEWHAARKHK-LSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFI 121

Query: 124 ESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +           K +P++       +    + AV++  +  NP  +V++P++  +    
Sbjct: 122 SAMLEADRLDGKGKISPTTVRHAALVLNKALRDAVKKRLIPYNPMEAVDKPRKARKEPPA 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------- 225
             KE   +     +EG+         +Y+G R  +      + +      I         
Sbjct: 182 L-KEGELRRLMSAAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAGCIFILQALKRN 240

Query: 226 ---------TQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQ 262
                     +   +   +E+    +  L      +  +                  D  
Sbjct: 241 LKGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAWQETGLVCTREDGS 300

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
            ++   FS  F+  A+K G++ + H +R   AT+   AG     +    G  +V    + 
Sbjct: 301 PIDPHAFSSAFRKLASKLGIDANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDL 360

Query: 322 YTKGA 326
           Y+   
Sbjct: 361 YSHVL 365


>gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
 gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC
 gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW]
          Length = 341

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 82/289 (28%), Gaps = 30/289 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
              +  + +        + ++  S+ +     +    +          +    + +    
Sbjct: 17  AEALERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAW 76

Query: 126 RKHTPS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +      +  + ++ +R  F+WA R   +       +  PK +    RP   +D 
Sbjct: 77  LAARAADGAGAATRSRGVSGVRSFFRWADRSGLLHNPAIALLTAPKAQRPLPRPLAADDA 136

Query: 180 QQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231
                           G + R  F  L   GLR S++       L     S++   K G 
Sbjct: 137 ALLLEEAAAVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGK 196

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNK 284
              V +     + +A                F+     +++        +      G+  
Sbjct: 197 QRDVPVLPAVREAVAAYLAAVPWGGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPD 256

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + H +R   AT     GA    +    G  ++   + YT   D   L
Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYT-DVDAEHL 304


>gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
 gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 82/278 (29%), Gaps = 38/278 (13%)

Query: 90  NSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+  ++      +         G         +   + ++ R    SS  + L++MR LF
Sbjct: 17  NTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLF 76

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190
           ++ + +   + +P   +  PKR     +  +  D+ +  +   E                
Sbjct: 77  RFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRAL 136

Query: 191 QPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +     E L  +GLR S+           +    +   K      V L     + +A   
Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKERLVPLNQASRQAMADYL 196

Query: 250 IG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
                            K  F    +   +    F+   K  A  +G+     S H +R 
Sbjct: 197 AMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAAASGLPARLVSPHVLRH 256

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A+     GA    +    G   +   + YT   +  
Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294


>gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae
           TIGR4]
 gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae CGSP14]
 gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
 gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS69]
 gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP9-BS68]
 gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CGSP14]
 gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae SP195]
 gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 70585]
 gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104]
 gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200]
 gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS458]
 gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS457]
 gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae 670-6B]
 gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 321

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  +   ++   + +          ++TT  +R    +    +  +
Sbjct: 46  LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++       +   F W  ++EY+  NP   +++ K +      +T E ++  +    E 
Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  +     +                  V         L   
Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223

Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++              Q++      I  +    K G+     H  R+  AT + D G
Sbjct: 224 LNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKG 283

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305


>gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A]
 gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus
           HVE10/4]
          Length = 291

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 30/272 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123
             L + +  +         +   + +     +    + D RK+T++ +   +        
Sbjct: 12  GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E R+    +   ++ ++R   KW         N  +    PK + + ++   +
Sbjct: 71  KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
             +Q+  +   + ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    
Sbjct: 123 SQIQKVLN-MCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V   D   +LL     GK+      D             K    K  +    H +R   A
Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T+S   G     L    G K +   + YT   
Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270


>gi|256957153|ref|ZP_05561324.1| integrase [Enterococcus faecalis DS5]
 gi|256947649|gb|EEU64281.1| integrase [Enterococcus faecalis DS5]
          Length = 382

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 119/385 (30%), Gaps = 56/385 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 2   IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 59  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKWAVR-----QEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+A+      Q  V        +      + I+ +T
Sbjct: 119 VNTWHSKGSSKQYPLFINYMNQVFKFAINIGVTSQNPVINVIVPKNQDIITSEKKIKFYT 178

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     K+ +     HG R   A++   AGA   E+    G   +    
Sbjct: 299 EFTINQAITDRYNIYRKKSNLPNIGLHGFRHTHASLLYYAGADHKEVQERLGHANIKTTL 358

Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344
           +TYT   +  +   K + ++S  + 
Sbjct: 359 DTYTHLTNDGK--EKTTEKLSKYIG 381


>gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 327

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 40/295 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132
            Y + A     LA  +   +    D++ R +        ++ + HIR  V        S 
Sbjct: 17  RYLEHARVEKRLAARTLTLYALDLDKLARFAAAVQVPLLQLGSAHIRRFVAQMHSGGRSG 76

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 L+  R  F WA RQ  ++ NP   V  P+      +    +D  +   +   G+
Sbjct: 77  RGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAEYDHSGA 136

Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232
            P L        E L   GLR  +          ++    +                   
Sbjct: 137 DPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEAHVFGKGSKR 196

Query: 233 ITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWFKAKATK 279
            +V +    M  L      +   F             +     ++ A    +  + ++ +
Sbjct: 197 RSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIWLRLRQRSQQ 256

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 257 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 310


>gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 289

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 14/255 (5%)

Query: 72  KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K L+ EY +        +  +  S+    D  +          I  +  +  +  +  +P
Sbjct: 20  KRLVEEYEQWLVLRKQASPRTVRSYLKDVDDFLAFVEQERSTDI--ELFKQFLHDKGLSP 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+  + L+++     +  RQ          V+ P++  +        +         +  
Sbjct: 78  STVARKLSAVSSFSAFLRRQGIALEFERPKVKIPQKLMQVP----NWNDLDQLVDEVQDH 133

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + RLA   +L+ GLR S+        + ++   ++ +       + + +     +     
Sbjct: 134 EVRLALRMMLHCGLRASEVLELRWSDIGDDYMLVRGKGG-KQRMLPVSEAIRTDIESIKR 192

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                F +   +K +          + T+A +    H +R   AT   +  A    +  +
Sbjct: 193 KGSYVFCDKKGKKRSRVWLW-----RKTRAFLGTHPHILRHAFATELTNY-ADIRVVQES 246

Query: 311 YGWKTVDQAETYTKG 325
            G   +   + YT  
Sbjct: 247 LGHSDITTTQRYTHV 261


>gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4]
          Length = 304

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 33/284 (11%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYF----DQIIRKSG----DFDYRKITTKHIRS--- 121
           LI  +          ++ +   ++           R  G    +   + IT    R    
Sbjct: 4   LIDRFIIHLQTEKGASLRTLTEYQKDLLEGLSFFARLLGVAEAELSPQSITPSLFRRFLG 63

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  R  + ++  + L + R  F++  R+  +  +P   V  PKR+    R     + + 
Sbjct: 64  YLHERSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYPHEAEA 123

Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236
             +       +  + R   E L  +GLR S+     +  +      ++    G       
Sbjct: 124 LVTAPKGTDPKAWRDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGGKERIAL 183

Query: 237 LPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGV 282
           L    +  L                        F+N+  ++++A    +   + A K GV
Sbjct: 184 LHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSYAAKTGV 243

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               + H  R   AT   D GA    +    G K +   + YT+
Sbjct: 244 KGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTR 287


>gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 336

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 82/296 (27%), Gaps = 50/296 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE-----------SRKHTPSS 132
            +L+ N+  ++     Q        F    +    +                 R   P S
Sbjct: 31  KNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVKAVDVRLFMGALIERGVKPRS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----------- 181
             + L S++  +++      +  +    +  P+         T++  ++           
Sbjct: 91  IARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPAFLTEQQTEKLFNEELSSGRA 150

Query: 182 --------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
                            + R   E L   GLR S+        L  +   +K T K    
Sbjct: 151 PFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLTTDRLDLDGGYVKLTGKGRKQ 210

Query: 233 ITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAG 281
             V +    ++ L      +  FF                 K     + +  +    K  
Sbjct: 211 RIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFVTKKGKQLYPMLVQRLTRKYL 270

Query: 282 VNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
           V+ +       H +R   AT   ++GA    +    G   +   E YT    DR++
Sbjct: 271 VSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLK 326


>gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 420

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 104/317 (32%), Gaps = 34/317 (10%)

Query: 45  PAYMSALTGSTPKREYINS-----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
            AY  A+    P              +   T + L + Y        LA  +  ++ +  
Sbjct: 79  DAYQEAIIQQKPLTPENIRNTFLGQDEAAHTFQDLFN-YHNEYEKQVLAKGTMKNYYTTQ 137

Query: 100 DQIIRKS------GDFDYRKITTKHI-------RSGVESRKHTPSSAIQFLTSM---RVL 143
           D I++          +D  +++ K I       R+  +     P +    +  +   + +
Sbjct: 138 DYILQFLKKSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPLNNNGVMKHLERFKKM 197

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLL 200
              AV  E++  +P +  +            T+E++   ++   +  +    R  F F  
Sbjct: 198 INMAVTIEWLDKDPFVKHKLKFTSK-ERGYLTEEELAVVETKELKTDKLIYVRDLFLFGC 256

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTIITVELPDGFMKLLAMTPIGKETF 255
           Y+GL   D+      +L   I          QK+   + + L     +++A         
Sbjct: 257 YTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVKLPLLPLAAQIIARHRHDPRAI 316

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
                 + ++  + + + K  A + G++K  S H  R   AT      G     +    G
Sbjct: 317 SNGTIFRPISNQKLNDYLKDLARECGIDKNFSFHLARHTFATTVTLANGVPIETVSKMLG 376

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y K  +R 
Sbjct: 377 HTKISTTQIYAKVVERK 393


>gi|228942100|ref|ZP_04104640.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228981669|ref|ZP_04141964.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228777781|gb|EEM26053.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis Bt407]
 gi|228817434|gb|EEM63519.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 352

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 102/344 (29%), Gaps = 41/344 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K+  + G   +  R     G  ++++              + +         +     
Sbjct: 2   IYKD-DKRGTYFFVVRVRQFDGTTKQVKRRGFKTKKEAREAEAKM--------LVEKESN 52

Query: 67  KPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              T + +   Y    +      ++N+  +  + ++ ++++ G      IT +H+     
Sbjct: 53  SNLTFEHVADSYFNWYTQRRKQSSINTIKN--AIYNHLMKEFGKMKIDCITPRHVMDYQN 110

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +++     +F T++  +F + ++   +  NP       +++++    + + +  + 
Sbjct: 111 KMINEYSAEYLKKFHTTLSAIFNFGIKFHGLTTNPARIAGNFQKESKKRINFWEFEEFKQ 170

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240
                +    +  F  L YSG R  +      + +       +I   K    +T      
Sbjct: 171 FISVVDEPMYKAFFSTLYYSGARKGELLALTWEDINFEEKTINIHKTKYNRQVTEPKTKA 230

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA------------------TQFSIWFKAKATKAGV 282
             +++ +                + A                  T     F      A V
Sbjct: 231 SNRIIMLPNFVMNLLRGIKKDAALTAPVKNDYVVFGEFYDSLATTSLHKKFNNYLKIAMV 290

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 291 KEIVMHEFRHSHASYLINKGVSPLVVAQRLGHSDVATTLNTYSH 334


>gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 340

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 101/316 (31%), Gaps = 12/316 (3%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISE 77
           + +Y F     +R +              +                ++P +  L+  I +
Sbjct: 11  RWMYKFEF-QKKRYKKEGFRTQKEALLAEAERRTQVNAPSLGLKELEEPPSDYLEETILK 69

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQF 136
           Y        +  N+           ++  GD     I    I + +E R  +  S   + 
Sbjct: 70  YLNYCKKRKMRTNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFNRD 129

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L  +R +F W   +E +  NP   +E+     E        D++  K   +      L  
Sbjct: 130 LRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIKAVKLVATRDEVDFL-- 187

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           E + Y+GLR  ++ R       +      I   + +K GT+         +  +A+    
Sbjct: 188 ETIFYAGLRRIEAIRLLWSRDVDFGSRTLISWTRKRKNGTLTPKPKAMTKILYMALKNRY 247

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
           +    +++   + +    +   K    KAGV +   H +R   A+I          +   
Sbjct: 248 ERRNRLDDRVFQFSVEYLNDMMKCLCEKAGVQHFGLHALRHLGASILLSENVPLPAVQEY 307

Query: 311 YGWKTVDQAETYTKGA 326
            G + +    TY    
Sbjct: 308 LGHERITTTNTYAHTL 323


>gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 368

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 105/353 (29%), Gaps = 35/353 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------TFIPAYMSALTGSTP----KR 58
            V     ++G I YY          +             T   AY   +         + 
Sbjct: 12  GVWINELKNGNIAYYINYRDEHGKPVKKKVGVKTKQSNFTVKDAYDRLIQAKHHLMTGEE 71

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
               S R K  T +     +     W  +   + IS E Y+   I     + D + I +K
Sbjct: 72  SPFKSQRAKKFTFE---DAWLAYYEWAKVNKKTYISDEQYYRLHIAPTFANKDIKSIKSK 128

Query: 118 HIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRKTEG 170
            I    +       +A     ++  MR +  +A++ + +           V+ P      
Sbjct: 129 DIEQFKQLYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIKNYANPISGGKVKLPTIDNAR 188

Query: 171 IRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226
               +KE  +         E  Q       LLY+G R S+       ++    N+   K 
Sbjct: 189 QAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSEVASLTWNNINFETNMIYFKA 248

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------- 278
            K G    V + +   +++      K    I  + +     +    ++            
Sbjct: 249 TKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGKQMERMLHSWQIVVDNIIDENKE 308

Query: 279 -KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             A    + H +R   A+  A AG     +    G KT++    Y+      R
Sbjct: 309 ADAKQRVTVHSLRHTHASWLAMAGLDILHIKEQLGHKTLEMTMRYSHLIPNKR 361


>gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
 gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540]
          Length = 364

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 103/352 (29%), Gaps = 40/352 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  + +T   K+ +Y     G+R        ST + A   A+   +   + +     K  
Sbjct: 4   YFKRGKTWSTKVRWY--DDDGKRHSKSKSGFSTKLLAKQWAIDQESKLNKGVQ--IAKEI 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +L    + +  +     L+  +   ++   + +     D   + IT    +  +     T
Sbjct: 60  SLVDYYNNWVNTYKKDKLSEITLDRYKYTGEALKGFFHDDKIKSITRVKYQEFINQYGAT 119

Query: 130 --PSSAIQFLTSMRV----------LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             P++  +  + +R           L+K   ++  +  N    V+      + I      
Sbjct: 120 HAPTTVKKVNSIIRACVKSAILDDYLYKDFTQRVELTANKDKVVKVDYLNLKEIHQLLTA 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
              + +     G   R      +Y+G+R ++        +     +I   K+  + T + 
Sbjct: 180 ATDKIEHR--PGFTSRFMIVTAIYTGMRLAEIQALTWNDIDWLHQTININKSWDMKTHDF 237

Query: 238 PD-----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                               ++K+L         F          +   +   ++     
Sbjct: 238 KPTKTESSNRKIKVNPELLHYLKILQDNRQSNLVFMNQYKSIP-TSNAVNKTLRSLLESL 296

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            +++     H +R     +    G   + +    G   +     TY    D 
Sbjct: 297 NIDRRNFHFHSLRHSHVALLLANGIDLYAISKRLGHSNISITANTYAYLIDE 348


>gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 97/362 (26%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MVGKPKV--HIKHNRRKENLQLYLIAKPRTPIERQQNKETLELAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT   +   VE  +       A       + + ++A+  E +  +PC  V        
Sbjct: 167 DLITKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKDVVCKVDDQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L            ++     +    S   K    +AG+N
Sbjct: 287 EQNKTKGHSAHSGVVIPLNDGLLSLIGDAPEDLDSSIFNLPSYESCSKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 368

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 109/349 (31%), Gaps = 42/349 (12%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G               G+R +  +    T   A  + +     +            TL
Sbjct: 7   KRGNKYCIVIDIGPDPETGKRRQKWFSGYKTKKEA-QADVAKKITELNEGTFVEPSKITL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + ++ +     S+  +S   ++S     II   G     K+   HI+   +S  ++ 
Sbjct: 66  KDYLIQWLEIKKM-SVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQSALNSG 124

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +    L     +      AV+Q  ++ NP      PK++   I+ WT+E+++QF     
Sbjct: 125 IANNTILFQHRILTAALNLAVKQNIISRNPATLAVIPKKEKSSIQTWTEEEVKQFLLHSQ 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------TGTII 233
           E S+  + +   + +G+R  +      Q +  N  ++   +                +  
Sbjct: 185 E-SRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAKNNSSKR 243

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKATK 279
           T+ +P   ++ L    +      +       +                  +  F      
Sbjct: 244 TIPIPLEVIEELKKCKLQINKDKLRIGPAYHDLDLIVCNKLGKVTTRTTFTRHFDKVIKN 303

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
           AG+ K   H  R   AT+    G     +    G   +      Y+   
Sbjct: 304 AGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSHVL 352


>gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402]
          Length = 267

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 73/245 (29%), Gaps = 24/245 (9%)

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D      T       +  R  +   A      + ++   F++ + +     NP  S+ERP
Sbjct: 3   DSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSESIERP 62

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           KR+    R  + +++    +     S    + R  FE +  +GLR S+     ++ +  +
Sbjct: 63  KREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKMEDIFYD 122

Query: 221 IF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265
                 T K      V         L    +   T  +     +                
Sbjct: 123 EDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLNNRGAV 182

Query: 266 --ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                        +  +G+    H +R   AT     GA    +    G   +   + YT
Sbjct: 183 LTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYT 242

Query: 324 KGADR 328
              D+
Sbjct: 243 HIEDK 247


>gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 423

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 105/367 (28%), Gaps = 40/367 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-----KREYINSPRKKPTTLKWLI 75
           + Y   +G  RR  + +    T   A + A                  P    TT+  + 
Sbjct: 48  VQYRTPEGKHRRTVIGHYGLMTVEQARVIAREKLVAVSKGVDPAAPVEPDGSTTTVGQIC 107

Query: 76  SEYRKS--------AHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             Y                +  ++           I    GD     +    I +     
Sbjct: 108 DWYLLEANAGRILGRRRRPIRASTLTMDKSRIETHIRPLLGDRRVSSLKLGDIEAMQADI 167

Query: 127 KHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
               ++                 A + ++S+  +F+ AVR   +  NP   V +      
Sbjct: 168 AAGKTAKGRAGPRGGTPIGGEGVAARTVSSLHSIFEHAVRWGKIESNPARGVRKLASAPR 227

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             R  + E        +  +   E      A   LL +G R  +        +     +I
Sbjct: 228 ERRLSSVEIARLGEAMRTLAAEGEHPTGLAAIRLLLLTGFRRMECLALQRAWVDAEQRAI 287

Query: 225 KTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +  +T T   + V        +LA        +    D    +        +     A +
Sbjct: 288 RLPETKTGPQMRVVGQAAIDLILAQPVTDGSPYVFPADWGNGHFIGVVRVLERVCGAARL 347

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS-RRIS 340
            + + H +R   A+++ D G +   + A  G       + Y    + +R+       ++ 
Sbjct: 348 TDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYVHIDEALRVAADRVSAKVV 407

Query: 341 SVVDSDD 347
           +++D  D
Sbjct: 408 ALLDGRD 414


>gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007]
          Length = 331

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++ + G+     R     GRRIR       +    +   +  +     +   P  +   L
Sbjct: 4   KQLKDGRYQVDVRPQGAGGRRIR-KIFTLKSKAQEFERYVLQNFHNNPWQARPADQRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             LI  +               ++ +  +++IR+ GD    ++T K +      +     
Sbjct: 62  SELIEVWW---MLDGRNQAYGDTYRTRLEKVIREMGDPRASQMTRKFMIEYRSDKLQAGL 118

Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PSS  + L ++  +F   +  + Y   NP   + + K +   +   + +++ +      
Sbjct: 119 MPSSINRDLCALSAMFSLLIDAEVYHNENPVRGIRKLKVQNTEMAFLSDDEIDRLLKR-- 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R  ++     +H+  N  +    K G   +V + D  + L+  
Sbjct: 177 LEGDARRIAILCLSTGARWKEASTLRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G                 F    +         ++ H +R   AT     G     L
Sbjct: 237 RRTGLLYQVDYL--------SFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288

Query: 308 MATYGWKTVDQAETYTK 324
               G  T+ Q  TY  
Sbjct: 289 QRILGHATIQQTMTYAH 305


>gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a]
          Length = 357

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118
             ++EY        + +  + +++ +     +R                +     +  K+
Sbjct: 16  ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165
           I++                R +   +  +   S+R  +K+    + + A +P L++E P 
Sbjct: 76  IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135

Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K    +  T ++  Q               +        L  G+R S+     V     
Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGITVNDFVE 195

Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261
           NI   +                   V L +  +  +              ++  FI+   
Sbjct: 196 NIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   +       +    G+     S H +R  +AT+    G     L    G + ++ 
Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315

Query: 319 AETYTKGAD-RIRLGIK 334
            + YT   + ++R  I 
Sbjct: 316 TQIYTHVVNTQLRDAIN 332


>gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 419

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 81/271 (29%), Gaps = 15/271 (5%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP---------- 130
               + + +  +++    + +   +G+   + KI  +            P          
Sbjct: 140 KRHANSSESIIVNWRRTHELLKIFAGEYLPFSKIDNRLAEDFRMFMLSAPCGGKKSGTVS 199

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++A  + +  +   K A   +Y+ ++    ++  + +       T E++    S   E 
Sbjct: 200 QNTAATYFSIFKAALKQAFIDDYLTVDLSAKIKGIQEQESRREYLTVEELNMLASTPCER 259

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              + +  F   +GLR  D  +   + +  +    +   T             +      
Sbjct: 260 DVLKRSALFSALTGLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQALQLC 319

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
             +        +   +    S   K     AG+ K  + H  R   AT+   +    + +
Sbjct: 320 GERRKPEQLVFEDLPDPAWISKPLKKWVESAGIKKKITYHCFRHTFATLQLSSSTDIYTV 379

Query: 308 MATYGWKTVDQAETYTKGADRIR-LGIKNSR 337
               G   V   + Y K  D  +    +  +
Sbjct: 380 SKMLGHTNVKTTQIYAKVVDEKKNKAAQAIQ 410


>gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581]
 gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581]
          Length = 308

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 87/292 (29%), Gaps = 23/292 (7%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKH 118
             P    T L      + ++    + +  +  ++      ++      D      +    
Sbjct: 2   ARPLDTSTPLGREADAFLEALS-RTASPATVDAYRRDLAALLDFLDRHDIGDPAALDAAL 60

Query: 119 IRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R       SR   P S  +   ++    +  +   Y+  NP   V  P+   +  RP  
Sbjct: 61  LRRFLGGERSRGLAPRSLARRRAALSRFAEHLMACGYLDHNPVSLVRTPRVPRDLPRPVD 120

Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            + + +F     +GS    + +   E    SGLR ++     +  +          K G 
Sbjct: 121 VDALARFLDTPHDGSPLACRDQAMLELFYSSGLRLAELAALDLDDIHARRVR-VLGKGGK 179

Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
              V +     + L             G+   F+     ++         +  A   G+ 
Sbjct: 180 PRQVPVGRRADQALTDWLSLRGALAADGEPALFVGARGNRLGHRAIQQRMRQLALTRGLA 239

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +   H +R   A+   ++      +    G   +   + YT+  D   L  
Sbjct: 240 EHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTR-LDWQHLAA 290


>gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 317

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 91/297 (30%), Gaps = 42/297 (14%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYR----KITTKHIRSGVE 124
           LI  +          +  +  +++       D   R+ G  D       I  K  R  + 
Sbjct: 4   LIDGFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRGYLA 63

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +    S+  + + + R  F++ VR+  V  +P   +  P+ K         E++  
Sbjct: 64  HLGQSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEEVGT 123

Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                     G + R   E L   GLR S+     +  L+     ++   K      + L
Sbjct: 124 LLEAPDLSPTGLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGKGNRERLLPL 183

Query: 238 PDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKAT--KAGVNK 284
               ++ L                     F+N   +++      + F        +GV  
Sbjct: 184 GGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYLKGLASGVPG 243

Query: 285 S------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
                         H +R   AT   +AGA    +    G   +   + YT+  ADR
Sbjct: 244 GTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADR 300


>gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
 gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275]
          Length = 302

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 105/276 (38%), Gaps = 21/276 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRK 127
           LI EY +       L++N+  S+ +   +        + D + +    I + +   E   
Sbjct: 14  LIKEYIEYIENKRKLSLNTVSSYRADLKKYKDYLEENNIDIKDVVETDILNYLVELEKNN 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  +  +S++    +    +  AI+P  ++++PK K E +   T+E+++   +F +
Sbjct: 74  TSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEEIEALLNFEN 133

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             S    + +  FE L  +G++ S+     V+ +   + SI    +     + L D   K
Sbjct: 134 LDSNKLKRDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSSKNKRVIPLIDVTKK 193

Query: 244 LLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
            L +         + + +          +          K  + KA ++K+     +R  
Sbjct: 194 YLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKKANIDKNINPTMLRHS 253

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A    + GA    +    G   +   ++Y    D+
Sbjct: 254 FAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQ 289


>gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci
           6BC]
 gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC]
          Length = 299

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L+ NS  ++       ++ +      +I+   +   V+         ++  + L +++
Sbjct: 22  RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRL 194
           V F++    + +   P +  E PK         T +++           +     ++   
Sbjct: 82  VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244
               L  +G+R S+ C   +  + ++   +  + + T +                 F + 
Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASEAIDAYLCPFREN 199

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L      +   F++   +K+  +         A +    + S H +R   AT   D  A 
Sbjct: 200 LQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G   +   E YT  A
Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282


>gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC
           17982]
          Length = 303

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 33/293 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGV 123
           +     EY +      ++ ++  ++      ++           +     +T + +RS +
Sbjct: 5   VGERWEEYLRL--GRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWL 62

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+  +   ++R    WA+R+  +  +P   +  P+       P  + D +
Sbjct: 63  ARTLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDAR 122

Query: 181 QFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
              +   + +        +     E     GLR S+ C   +  L  +  +++       
Sbjct: 123 VLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNK 182

Query: 232 IITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAG 281
              V         L    +               F+ +   +++           A +AG
Sbjct: 183 ERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAG 242

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           V + + HG+R  +AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 243 VHDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSA 294


>gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M]
 gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M]
          Length = 302

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 27/289 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
           + ++ E+ +        + ++R ++      ++        D R ++   +RS + +   
Sbjct: 6   EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++     +  ++++    WAVR+  +A +P   ++ PK          ++      + 
Sbjct: 66  AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
              G         + RL  E L  +G+R S+ C   +  +      ++   K     T  
Sbjct: 126 AKSGAQQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAP 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284
                 + L              +        A    +  +   T             + 
Sbjct: 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDGAPDM 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 294


>gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276]
 gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis
           6276s]
          Length = 315

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 43/302 (14%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------------ 110
           T+    +  Y K+    SL  ++  ++      +                          
Sbjct: 3   TSFYAFLD-YLKNMKASSL--HTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYP 59

Query: 111 ---YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +   T  +IR  +  +    H+  +  + L++++   ++ V+ + +  NP   +  P
Sbjct: 60  PLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGP 119

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +   E   P T E +    +        G + R   E    SGLR S+        +   
Sbjct: 120 RLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQ 179

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFS 270
                   K      V +    ++ L                +  F+N   ++++     
Sbjct: 180 SHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSID 239

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             F+    K G++   + H +R   AT   + G     +    G  +++    YT  + +
Sbjct: 240 RKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK 299

Query: 329 IR 330
           ++
Sbjct: 300 LK 301


>gi|257791278|ref|YP_003181884.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257475175|gb|ACV55495.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 357

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 98/361 (27%), Gaps = 42/361 (11%)

Query: 7   LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +P ++     + G      YY      R+ ++     +        A           ++
Sbjct: 1   MPAYMN---GKTGSWYVQCYYSDIDGNRKHKVKRGFATKGDALAWEA-------DFLASA 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                   +  +  Y +      L +N+ ++ E     +I+   G      IT K +   
Sbjct: 51  DGSMSMPFEAFVKRYSEDVRPR-LKLNTWLTKEHIIRTKIVPFFGPKRMCDITPKDVVDW 109

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIR 172
                         ++ +        +  +F  AV+   +  +P     +   +    +R
Sbjct: 110 QNRMVGSYDDEGKPYSGTYLRTINNQLSAIFNHAVKYYGLGKSPATPTIKIGERKGAEMR 169

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            WTKE    F     +      AFE L + GLR  +        +      I   K+   
Sbjct: 170 FWTKEQYLAFSEEVMDKPASFYAFEILYWCGLRVGELLALEPNDIDLGKCLIHVTKSYQR 229

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             V +P+     LA                    +      K  
Sbjct: 230 IRRRDVITSPKTPKSKRDVVMPEFLADELADFLGSIPEERRACRIFCFTKSYLHHEMKRG 289

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               G+     H +R    ++  + G +A  +    G +T +    Y       +  +  
Sbjct: 290 CAACGLEPIRIHDLRHSHVSLLIEMGFSAIAIADRLGHETYEMTLRYAHLFPSKQSDMAA 349

Query: 336 S 336
           +
Sbjct: 350 A 350


>gi|307710454|ref|ZP_07646891.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307618717|gb|EFN97856.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 384

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+  +       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
 gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483]
 gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14]
          Length = 381

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 104/373 (27%), Gaps = 36/373 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  +    G    Y   +R G      L                  +      
Sbjct: 9   KVKEPIRLRMKPLSDGSKSLYLDIYRDGKRTYEYLKMYIIPETDNNARRQNQATMDAANA 68

Query: 61  INSPRKKPTT--------------LKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRK 105
           I S R    T              L   +  Y ++         N              +
Sbjct: 69  IKSKRIIELTSNEAGIVFRKDKTYLLDWMKVYMEAQESAGKKDGNQIKIAMRILKDYAGE 128

Query: 106 S-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                   GDF    IT        + +  +  +   +  ++      AVR++ +  NP 
Sbjct: 129 MVTLDQIDGDFCRGYITYLLTEYHPKGKDISNYTLHNYYRALNGALNSAVRKKKMKANPF 188

Query: 159 ------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                   + +P+     +     + +        E    + A+ F  + GLR SD  + 
Sbjct: 189 NELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEIVKCAYLFSCFCGLRISDIIKL 248

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
             + +  +    +   +       +      + L   P        +N     +A    +
Sbjct: 249 KWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKWMPERGGKSSEDNVFDLPSANTIRM 308

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K  A  AG++K    H  R   AT+    GA  + +    G   V   + Y K  ++ 
Sbjct: 309 QLKPWAKAAGISKRFSYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368

Query: 330 RLGIKNSRRISSV 342
           +   +    ++ +
Sbjct: 369 K--DEAVNLVNGL 379


>gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae G54]
 gi|221231667|ref|YP_002510819.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200]
 gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae CDC1873-00]
 gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae MLV-016]
 gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
 gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC
           700669]
 gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae JJA]
 gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae P1031]
 gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141]
 gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 321

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  +   ++   + +          ++TT  +R    +    +  +
Sbjct: 46  LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++       +   F W  ++EY+  NP   +++ K +      +T E ++  +    E 
Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  +     +                  V         L   
Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223

Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++              Q++      I  +    K G+     H  R+  AT + D G
Sbjct: 224 LNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAIDKG 283

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305


>gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg]
 gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg]
          Length = 443

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 108/402 (26%), Gaps = 69/402 (17%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             SL LP  +T+     G+    +     R            +      L  +  + ++ 
Sbjct: 51  KKSLNLPKGITRCSD--GRYQARYTYEGHRYCLYGRD-----VKELEERLNNAKYEIQHG 103

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIR 120
              +++  +L      +       ++   +  S+E  Y   +  + G    + I  +HI+
Sbjct: 104 IYAKEERISLNAWYETWINEYKSMTVKQGTVESYECMYLYYVKPELGKRLIKDIRGEHIQ 163

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                     ++ S+       +  +FK A++ E +  NP      P+ + +  R     
Sbjct: 164 KLYNDLSRNGYSKSTISLIHVLLGAMFKQALKNELIKKNPVDFTTLPRAERKKERRVLTL 223

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYS--------GLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             Q+       G +        L +        GL   D      +           +  
Sbjct: 224 KEQEILLKEITGHELEPVVRLSLATGLRVGEVTGLEWCDVDFNKKEVTVRGTLKCTRKGM 283

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--------ATKAG 281
                    D   + + +    +         QK +     I +K            + G
Sbjct: 284 EYYKDTPKTDKSTRSIPLLDNMELMLKRYRIIQKEHKLSMGIDWKPIEGLEDLVFLREDG 343

Query: 282 VNK---------------------------------------SAHGVRKFSATISADAGA 302
                                                     + H +R   AT + + G 
Sbjct: 344 KPFSGQHIRQQLVHIVDGINEKYYSKKSIRQEKLLEEKFDYFTPHALRHTFATRALENGI 403

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               +    G  ++    + YT    + +   +  +++ S++
Sbjct: 404 PPKVVQEILGHSSITMTLDLYTHVLPQTK--AQEMKKLESLI 443


>gi|303245973|ref|ZP_07332255.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492756|gb|EFL52624.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 395

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 108/381 (28%), Gaps = 40/381 (10%)

Query: 1   MTPSLRLP---PFVTKE------RTRHGKIIYYFRKGHGRRIRLPYPH------ESTFIP 45
           M    R     P V          ++  +I Y   +  G+ I                  
Sbjct: 1   MPAKKRFKTSYPGVYYVEGQAVATSKPERIYYVMYRRDGKLIEEKAGRQHQDAMTPAKAA 60

Query: 46  AYMSAL--------TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
              +               + +          T   L  EY  S      A+ +      
Sbjct: 61  RIRAERIEGKALSNQARREEDKAAKEAEAGRWTFTRLWEEY-SSQKTPGAALTT--DRSR 117

Query: 98  YFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +   +    G+ D  +   +    +RS +  +  +P +    L   + L ++ V++    
Sbjct: 118 FEKYLKPTFGEKDPVEVLTLDLDRLRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCD 177

Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC 210
                      P+   E       +++ +      +    + A    L  ++G+R  +  
Sbjct: 178 SPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELF 237

Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           +   + +        I+  K G    + L D    +L   P    T ++   +       
Sbjct: 238 KLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARGVLEDHPHVDGTPYVFPGQGGKQRVT 297

Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             +      T+AG+       HG+R   A+  A +G      L      K+    + Y+ 
Sbjct: 298 IQVASNRIKTRAGLPADFRPLHGLRHLFASTLASSGQVDMLTLQKLLTHKSPQMTKRYSH 357

Query: 325 GADRI-RLGIKNSRRISSVVD 344
             D   +   + +  +   V 
Sbjct: 358 LRDDALKQASEVAGNLLGNVG 378


>gi|227484863|ref|ZP_03915179.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237223|gb|EEI87238.1| possible phage integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 377

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 113/367 (30%), Gaps = 52/367 (14%)

Query: 10  FVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            +   R ++G++ Y F          G+ IR      ++   A ++             +
Sbjct: 2   NIKSYRDKNGELRYKFNAYLGTDDITGKEIRTNRSGFTSKKQAELAYANLRNENLRRKKN 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           P     T K +   + +         + + +   +   I    G+   + ITT  ++   
Sbjct: 62  P-----TFKEIGERWLELYSKTVKYSSYQRTKSLFNTHIYPFIGNKLLKSITTAMLQELT 116

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKE 177
             +    +S  +    ++ +F +A+ ++ V  NP LSV  P          E I  W K+
Sbjct: 117 NKKSKELASFSKINAQIKRVFDYAISRDIVDYNPALSVIYPITNVNSVDRYESIEFWEKD 176

Query: 178 DMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228
           ++++F +   +         F +  Y+G+R S+        +  N  +I   K       
Sbjct: 177 ELKEFLTACKKDLDFMWFCYFWILSYTGMRKSELQALEWADIDFNRRTININKSLSVYKD 236

Query: 229 ----------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                       +   + +    +KLL      +   +     +                
Sbjct: 237 NKKFISSTKTKNSTRIITIDSITVKLLLDWKQQQSEIYKKTVIKGKTQKYVFTDKSLELT 296

Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                   F        + K   H +R   A++  +AG    ++    G   ++     Y
Sbjct: 297 SHNAPRKRFLRVLKNNNLRKIRLHSLRHTHASLCFEAGMDIKDVQHRLGHSNIETTLNIY 356

Query: 323 TKGADRI 329
              +   
Sbjct: 357 VHISKIK 363


>gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
 gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712]
          Length = 307

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 81/288 (28%), Gaps = 38/288 (13%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVES---- 125
           I  +          +  +  +++   +Q        +      +IT+K +R         
Sbjct: 3   IDSFLSYLKNIKRYSALTITAYKEDLNQFREFCEKVELIRQDEEITSKMVRRFEMGLMSG 62

Query: 126 -------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        R  T  S  + L+S+R  F++ VR+  +  +P   V  PK       
Sbjct: 63  GLKIGGVDGEEKLRPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPV 122

Query: 173 PWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                 M +              + R+      Y+G+R S+     ++ +      I+  
Sbjct: 123 FVPDYQMDEVLDKHASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIRVN 182

Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAG 281
                   V +       L +    +E              K         ++      G
Sbjct: 183 GKGDKQRIVPMLPELAGDLRIYLNKREELVGEKHQFVFVTDKGKPVYDKFIYRLAVKYLG 242

Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +S H +R   AT   + GA    +    G   +   + YT 
Sbjct: 243 EVTSLKKRSPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH 290


>gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
 gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453]
          Length = 302

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 73/266 (27%), Gaps = 16/266 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  Y         + ++  ++     ++      +    +     +   +  R   P S 
Sbjct: 16  LDAYLTQLTQQGKSPHTLDAYRRDLIELANMLPENQQPTRNDVVRVLKQLSQRGQHPRSL 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
            + LTS R   ++ V    ++ NP   ++ PK      +   +E + Q        S   
Sbjct: 76  ARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQSDDV 135

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              +     E    SGLR ++     V  +  +   +     G                 
Sbjct: 136 LAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRPSIAAID 195

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISA 298
             +              +     +  +  A +  +         + S H +R   A+   
Sbjct: 196 AYLSTRYAVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHMLRHSYASHLL 255

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            A      +    G + +   + Y K
Sbjct: 256 QASRDVRAVQELLGHQNLSTTQIYAK 281


>gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3]
          Length = 321

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 83/293 (28%), Gaps = 38/293 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRSGV 123
            + + Y         +  +   +      +          +     D+ +++   +R+ +
Sbjct: 8   EIWAHYLA--KEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFL 65

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM-- 179
            +   +P    + + S R  +++ VR + +    +    +  PK         T ED+  
Sbjct: 66  AAADPSPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSK 125

Query: 180 ----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGT 231
                        G +      FL  +GLR S+        ++    S        K   
Sbjct: 126 LLEVVYRDKSPQRGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKGDK 185

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATK 279
              V L       L      ++T          +                       A +
Sbjct: 186 ERRVPLSPTAQGALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKMLDTAAER 245

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AG++    S H +R   AT   + G T  E+    G + +     Y +   R 
Sbjct: 246 AGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRR 298


>gi|301067092|ref|YP_003789115.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
 gi|300439499|gb|ADK19265.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Lactobacillus casei str. Zhang]
          Length = 360

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 29/337 (8%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + GK+  Y   ++   G+  +L          A ++A +        I   +    TL  
Sbjct: 6   KRGKVWQYEISYKDLDGKFKKLRKSGFPRKSDAELAA-SQVKSIYLDIKQYQAGAITLSE 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131
               +       S++  + I +E+    I +  G    R +T    +  +   ++ H P 
Sbjct: 65  YFDRWIHLYKQNSVSSVTFIKYENTLSHIQQLFGGVLLRDLTRTLYQERLNVFAQNHAPR 124

Query: 132 SAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +   F   +R  L      +         ++   +      R     +  +        +
Sbjct: 125 TVAAFHKQIRAALLDAVDERIIHLDPTRKAIISGRSLPLTKRALDYREWYRLVRGLDTLN 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK------L 244
             ++       +GLR ++      + +      I   KT                    +
Sbjct: 185 TEQMIIYIAAVTGLRYAEVLGLTERDIDFGHAEISVNKTWDYKYHTGFKKTKNTASVRTI 244

Query: 245 LAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVNK-SAHGV 289
           +       +            +                 +     K    G+ + + HG+
Sbjct: 245 VLDPVSLSKLRHFLKVNSPQTSNTAIFAPDGHAPVSAEINKILTQKLESLGLPRVTFHGL 304

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           R   A+I    G +   +    G   +   + TY   
Sbjct: 305 RHTHASILLYQGVSVLSVSKRLGHSNITTTQATYLHV 341


>gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163]
 gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163]
          Length = 359

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 96/346 (27%), Gaps = 42/346 (12%)

Query: 12  TKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            K   + GK ++Y         G  + I             Y  +          I    
Sbjct: 4   YKYTLKSGKTLWYANFYYTDWTGEKKHICKRGFKTQREAKDYERSFLDQQSSSSDILFSS 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
                   L++ Y +      L   +  +     D +++   G      I T  +R    
Sbjct: 64  --------LVANYLEDMEHR-LKPTTMENKRFIIDTKLLPYFGKQKICDIDTIKVRKWQN 114

Query: 125 SR------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      P S     T    +  +  +AV    + +NPC +     +         
Sbjct: 115 ELISYRDDDGKPFSQTYLKTVNNQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKADEMNIW 174

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
            +   +  S     S  +LAF+ L Y+G+R  +        + ++      +        
Sbjct: 175 TQKEYERFSNAISKSSMKLAFDILFYTGMRSGELLALTPADILSSKRIDINKNYAKIKGE 234

Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                         + +PD     +             +       T      K  + + 
Sbjct: 235 ELFLEPKTPKAKRCISIPDFLYDDIQEYISKLYGIGNGDRIFYFQKTALEKEMKRVSERI 294

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           G+     H +R   A++  + G T  E+    G +++    +TY+ 
Sbjct: 295 GLKPIRVHDLRHSHASMLIELGFTPLEIAERLGHESIKTTLDTYSH 340


>gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 430

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 103/386 (26%), Gaps = 58/386 (15%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP------HESTFIPAYMSALTGSTPK--- 57
           +P  V        K++Y    G        Y                   L  S      
Sbjct: 37  MPSGVKVY-----KVVYRANGGGRGETPKEYTIGQHGVFTPEEARKEAERLLSSVRLGTD 91

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFDYRKIT 115
            +   + ++K  T+  L   Y +         ++  S  +      I    G     ++ 
Sbjct: 92  PQDAKAQKRKEMTVAELCDFYLEEGTTTK-KASTLKSDGYR-INRHIKPLLGKLKISEVN 149

Query: 116 TKHIRSGVESR--------------------------------KHTPSSAIQFLTSMRVL 143
           + HI   +                                   +    +A + + ++  +
Sbjct: 150 SSHIERFLRDVAAGKHGGRKPSKVEAKRTGLTAETRGRTDSNVRGGKGTATRTVITLSGI 209

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           F +AV+++  + +PC  VE  K             + + Q        +        L+ 
Sbjct: 210 FTFAVKRKLRSDHPCRGVETYKAGKSERHLSLEELKRLGQVMDLSHWNATAVAIIRCLIL 269

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  +        +  +   +K   + T   V         L    +           
Sbjct: 270 TGCRKGEIEHLRRDAVDFSNHFLKLSDSKTGPKVVPVGLPALELLRPYVNASVKSEFVFP 329

Query: 262 QKMNAT----QFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTV 316
             ++A          +      A + K+  H +R   A+++ + G T   +    G   +
Sbjct: 330 SAVDANKPFIGTPKIWTQIKLAADLPKTTLHDLRHTFASLAIEDGKTLPIIGKILGHSDI 389

Query: 317 DQAETYTKGADR-IRLGIKNSRRISS 341
              E Y    D   R    +   +++
Sbjct: 390 KTTERYAHLTDTSARRAANDISVLAA 415


>gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
 gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P +L   +  Y +        + ++  ++     +        S + D  ++    +RS 
Sbjct: 6   PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 65

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +     ++  +  +S R    W  +   ++++P   +  P  +        +   
Sbjct: 66  LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 125

Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
                    G         + RL  E L  +G+R  + C   V+ +  +   ++   K  
Sbjct: 126 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 185

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATK 279
              +V         L            ++   +                 S+  +  A  
Sbjct: 186 KERSVPYGLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 245

Query: 280 AG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            G  +   HG+R  +AT   + GA    +    G  ++   + YT    +R+R
Sbjct: 246 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 298


>gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 429

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 89/339 (26%), Gaps = 27/339 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGSTP--------KREYIN 62
                GK  Y  ++     I      +     F                     + E   
Sbjct: 63  RTLADGKAYYRPKRDANGIILCRSQKDQEACIFADKVRDLRQHEYDNQSLYTDSEAEQAA 122

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIR 120
              +          E  K     + + + ++++      +   +         I    I 
Sbjct: 123 QNERSKCDFIKYFEE-LKDKRHKNSSKSIQVNWNRELALLKLYTDGKPLLFGSIDLNLIE 181

Query: 121 SGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              +   + P           ++A  + +  +   + A    Y+ I+    V+    +  
Sbjct: 182 DYKDYLINAPQGGSKTGTISANTASTYFSIFKAGLRQAFIDGYLTIDLAAKVKNIYYEES 241

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                T E++ Q  +   +    + A  F   +GLR SD  +   + +  +    +   T
Sbjct: 242 QREYLTLEELNQLAATPCDSEILKRAALFSALTGLRHSDIKQLKWRDIVKDKEHYQLHFT 301

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                                 +        +   + +  +   K     +G+ K  + H
Sbjct: 302 QQKTKGVEYMPISDQAYSLCGERGDADRLVFEGLQDPSWINRPVKRWVEASGITKHITFH 361

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             R   AT+    G   + +    G K V   + Y K  
Sbjct: 362 CFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKIV 400


>gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 344

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 115/345 (33%), Gaps = 24/345 (6%)

Query: 12  TKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +++   G+I  YY+ +  G R+ +  P    F+ ++ +A            +      T
Sbjct: 11  VRKKLATGEIATYYYHRPTGIRL-VGEPGTPEFLASFQAA--------AKSMTQTHGAGT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESR 126
           + WLI +Y  S  W  LA +++         +  K G         + T        +  
Sbjct: 62  VAWLIRQYCDSPQWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRPLYLRWHDKM 121

Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             T P +A   L+++  +  W V +  +  NP  + ER  +     + W  E +  F   
Sbjct: 122 AATHPRAADAKLSALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNKA 181

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            S   +  L       +G R  D  +           S++  K+G  + +         L
Sbjct: 182 ASPELRLALLLALH--TGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAEL 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
              P    T     D +      F+  +      + +  +   H +R  + T+ ++ G+T
Sbjct: 240 DAAPRRAVTILTKPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGST 299

Query: 304 AHELMATYGWKTVDQ---AETYTKGADRIRLGIKNSRRISSVVDS 345
             E+    G          ETY   A    L      ++     +
Sbjct: 300 PQEIATITGHTVASVNRILETY--LARTRTLAESAIIKLDQHRRN 342


>gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 370

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 115/360 (31%), Gaps = 41/360 (11%)

Query: 18  HGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y      G   +G++I+  +    ++  + +             N       T  
Sbjct: 17  NGKPYYKASVTIGFDSNGKQIKKSFG---SYKKSIVLNKMDKAKYEAKNNMSSNSNITFG 73

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK-SGDFDYRKITTKHIRSGVESR--KH 128
            L  ++  +     ++ N+   +E+ +  ++      +    +IT   +++       K 
Sbjct: 74  NLFKDWIFNFKKMDVSDNTFSVYETTYRLRLKDYNIANKRANQITLNDLQAYFNELQEKF 133

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187
           T     +    +    K+A+ Q  +  + C  +  PK K +     ++K++ +      +
Sbjct: 134 TAGQIKRTYIHIHSCIKFAIFQGVMVRDYCGGIILPKEKKKEKYNVFSKQEQELILKTLN 193

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------- 231
           +         F  Y+GLR  +        +++NI +I  Q                    
Sbjct: 194 KKDVVDCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQYNKRVEVIDIGKNNLTYEFK 253

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                     + LP   + LL   P   +  F  N K   +  +      +      +  
Sbjct: 254 DLKTKNSKREIPLPIKILDLLKDLPKQFDLIFTINGK-PFDRKRPQRRMISLCKTLKIEY 312

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
           +S H +R   AT   +       + +  G   +      YT      +L  +   ++ ++
Sbjct: 313 RSFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKL--EILDKLDNL 370


>gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum
           TLS]
 gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC
 gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum
           TLS]
          Length = 336

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 51/315 (16%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            + E+        +++  +  ++ +   Q         G  +   +  + +      R  
Sbjct: 19  WLGEFLVHLESTRNVSAKTVTAYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFM 78

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----- 175
                    P S  + L S++  +++ +    +  +P   V  P+ + +     +     
Sbjct: 79  GDLLDSGIKPRSIARKLASVKSFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEAS 138

Query: 176 ---------------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
                           E  Q+      E ++ R   E L   GLR S+        +   
Sbjct: 139 RLFDQLVLSDQESVGPEQGQKAAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLV 198

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQF 269
                 T K      V   +   + L      +  FF                      +
Sbjct: 199 HGFLKVTGKGRKQRIVPFGEPAAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIY 258

Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  +    +     +       H +R   AT   + GA    +    G   +   E YT
Sbjct: 259 PMLVQRMTKRYLSPVTESARKNPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYT 318

Query: 324 KGA-DRIRLGIKNSR 337
               +R+R     + 
Sbjct: 319 HVTFNRLRDAYTKAH 333


>gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1]
 gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1]
          Length = 304

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 27/300 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT 129
            +  + +       LA  +R  +    D       D     +  +T   +R+ V  ++  
Sbjct: 5   WLERFDRHLASERRLAEPTRRRYRQDLDAFAAFCTDRGLASWAAVTHDVVRAWVAHQRRR 64

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + L ++R  +++ +R+  VA +P   V  P+ +         +++       
Sbjct: 65  GLAGRTLGRQLAALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEVAGLLDGA 124

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDG 240
             G     +    +E +  SGLR S+     +  L      ++    K      V +   
Sbjct: 125 DPGDPLQARDAALYELIYSSGLRLSEVIGLNMMDLDRRDGLVRVLRGKGAKDRVVPVGRQ 184

Query: 241 FMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
            ++ L      +  +        F+     ++ A       +  A   GV +    H +R
Sbjct: 185 ALRALDAWLRHRPAWASAEETAIFVGRHGGRLGARTVQRRLQRLAHLRGVQRRVHPHMLR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
              AT   ++      +    G   +   + YT   D   L     +   R     D D+
Sbjct: 245 HSFATHMLESSGDLRAIQELLGHADISTTQVYTH-LDFQHLAQVYDQAHPRARRRKDPDN 303


>gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 321

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 93/282 (32%), Gaps = 23/282 (8%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG 122
                 +   ++Y +       LA ++  ++          +         +T   I + 
Sbjct: 8   AATRAWQEATADYLEILRVERGLAAHTLAAYRRDLADFAAFAAARQVEPAGVTRPLILAY 67

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +        + ++A + L ++R  F++   +  V  +P   +  P+      R    +++
Sbjct: 68  LHQLERAGRSRATAARRLAALRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLAVDEV 127

Query: 180 QQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234
           ++           G + R   E L  +GLR S+     +  L  +   ++ +  G     
Sbjct: 128 ERVLELPQPASPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 187

Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           V +    ++                 G+   F+N    +++        +  A +AGV +
Sbjct: 188 VPVAAPAVEATRQYLARGRPALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGVPR 247

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H +R   AT     GA    +    G   +   + YT 
Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTH 289


>gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 380

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 84/277 (30%), Gaps = 32/277 (11%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----------------YRKITTKHIRS 121
             +      ++ +  ++  +  + ++   D                        T+    
Sbjct: 90  LTTLKLKGYSLKTSKAYRGHVRRYLQNLADHLKMKSPGTLKDEKMTSAIIDSSRTQQYAL 149

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  + H+P+   Q ++++R    +   + +   +  +   RP+++ +     +++++ +
Sbjct: 150 QLLEQGHSPAYVNQAISALR----FLAVEVFKQPSEQMKYIRPQKEKKLPYVLSEQEVLR 205

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPD 239
                +   + R        SGLR S+  R  V  +        ++  K        L  
Sbjct: 206 VIQAPT-NLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKGKKDRHTLLSQ 264

Query: 240 GFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
               ++               F   +    ++       F+     +G+ K    H +R 
Sbjct: 265 TAWDMIQKYVEAERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQVGIHVLRH 324

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             AT   + G     +    G       E YT  + +
Sbjct: 325 SFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTK 361


>gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 283

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 87/275 (31%), Gaps = 18/275 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           +  + +  ++    +L   S   +++Y    ++        ++T + +R+ + ++K    
Sbjct: 3   EKYLEQLEEAGKIRNLKERSINCYKNYVSYFLKYQA-KPPEELTCQDVRNFLLAKKEEGL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++   + +S+R  ++       + I               +      D         +
Sbjct: 62  KATTLNLYNSSIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTVDEIDRLLEAVD 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + R  F  +  SG+R S+        +   N    ++  K        L    + +L 
Sbjct: 117 DIKYRAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILT 176

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                K          K      +        +   + A + K  + H +R   AT   +
Sbjct: 177 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVSDAELPKKATPHCLRHSFATHLME 236

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            G     + A  G +     E Y   +++  +GI+
Sbjct: 237 QGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 271


>gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7]
 gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 120/354 (33%), Gaps = 40/354 (11%)

Query: 17  RHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G+       G   G+R      +  T   A    +        +  +      T+K L
Sbjct: 10  KDGRWETRVSLGVVDGKRQT-KSFYGRTKEEAEGKMMAEVMNGMSFQITG----LTVKAL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             E+  S +   + V+++ ++ + F   I+   GD    +IT+K +   ++++     SA
Sbjct: 65  CMEWL-SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQAKLDEGLSA 123

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
                 L  ++ +FK+A ++ ++      +V  PK      R  TK++ ++ K +     
Sbjct: 124 GYVSNILVLLKTVFKYAQKEYHILNP-FDNVIMPKSTKSETRLLTKKEQKKLKEYLKSNV 182

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------- 232
           +   L     +  GLR  + C    Q +     ++  ++T                    
Sbjct: 183 NTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKIVILPP 242

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
                   + +P     +L       E + +++  +          +     + G+    
Sbjct: 243 KSKSSFREIPIPTSVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELGLPSVK 302

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337
            H +R  +A+ + +AG     L    G   ++     Y     DR R  +    
Sbjct: 303 FHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKRKLMDKLD 356


>gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1]
 gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 397

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 117/392 (29%), Gaps = 54/392 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-------------------YPHESTFI 44
            L+ P  +  ++  +G    Y     G  IR                        E    
Sbjct: 9   KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYLIPEKTREDKAK 68

Query: 45  PAYMSALTGSTPKREYINSPRKK------PTTLKWLISEYRKSAHWGSL---AVNSRISF 95
                AL  +   +  +              +   +I  Y  +    S    ++N   + 
Sbjct: 69  NEATLALAKAIQSKRIVELQNDAHGFQNTNKSKANVID-YLMNMRSQSKERGSLNYEKTV 127

Query: 96  ESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAIQFLT 138
            +   ++    GD   +R I    + S V+  K                 + +S I +  
Sbjct: 128 GNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKAGGVLSNNSVIAYYG 187

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +R     A ++  + +NP    +   +           T E++++      +    + A
Sbjct: 188 VLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIEELKRLIGTECKYEIMKQA 247

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
           F F    GLR SD  +     LQ +   I+   K              + L   P   E 
Sbjct: 248 FLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQQNEA 307

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
              +      +    +   +  A  AG+  + S H  R   AT+    GA  + +    G
Sbjct: 308 KGDDLIFPLTHEGTINKILQKWAKDAGIIKHISFHVARHTHATMMLTLGADLYTVSKLLG 367

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            K +   + Y K  D+ +   +    I ++ D
Sbjct: 368 HKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397


>gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
 gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii
           PG-8A]
          Length = 306

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 89/287 (31%), Gaps = 31/287 (10%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSG 122
            +IS+Y+       + + ++ IS+ +               K         +   +I S 
Sbjct: 2   DIISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYI-SY 60

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KED 178
           ++++     +  + L+S++  + + + +E +  N    ++ PK                 
Sbjct: 61  LDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYL 120

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237
                +    G +  +  + L   G+R S+     ++ +  +   I    K      + L
Sbjct: 121 FDSIDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIIL 180

Query: 238 PDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
            +  ++ +                   ++  FIN     +      +        +G   
Sbjct: 181 HEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSGETY 240

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H +R   AT   + GA    +    G + +   + YT  +   
Sbjct: 241 AIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQ 287


>gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 111/367 (30%), Gaps = 51/367 (13%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   +  + +Y FR         G  R IR             +  +       +Y  
Sbjct: 4   IIKYTNKDNETLYKFRFYAGLDELTGKQRYIRRQGFKSEKDAKTELLKIEYLVSTNQYFK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
           S +        ++ E+       ++  ++    E      +     D    KIT +  + 
Sbjct: 64  SVKSGK--FGDVLDEWLALHK-ETVKASTWQFIELRANKHVRPYFKDMYVDKITLRQCQD 120

Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            V    K  P + +  ++ ++    +A+R   +  NP L V +PK++            +
Sbjct: 121 FVNKTFKVAPVAYVYSVSIVKNTLDYALRLGMIESNPMLYVIKPKKQANISDNHGNYYNK 180

Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
                      +   +    F  L YSG+R  +        L     +I   KT      
Sbjct: 181 DELKKFLDVAKNTNLKKYALFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLARTNN 240

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267
                          + L +  +++L M  + +    +      M++             
Sbjct: 241 GIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFI 300

Query: 268 ---QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                 +  K  A KAG++  + HG R   AT+   +G    ++ A  G   V      Y
Sbjct: 301 IVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIY 360

Query: 323 TKGADRI 329
           T      
Sbjct: 361 THAMKEK 367


>gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4]
 gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25]
 gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27]
 gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4]
          Length = 291

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123
             L + +  +         +   + +     +    + D RK+T++ +   +        
Sbjct: 12  GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E R+    +   ++ ++R   KW         N  +    PK + + ++   +
Sbjct: 71  KVKGDDVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
             +Q+  +     ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    
Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V   D   +LL     GK+      D             K    K  +    H +R   A
Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T+S   G     L    G K +   + YT   
Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270


>gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 305

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 83/296 (28%), Gaps = 30/296 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
             LI  + +        + N+ +++ +         G       T   I     +     
Sbjct: 5   AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGG--LSGATKDRIADLTMAWAELA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------- 181
            SS  +  +++R  + +   +     NP  ++ RP  +    +  + +++          
Sbjct: 63  ASSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSLFALIAGK 122

Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              +       +     E L  SGLR ++      + L ++   +  +  G    +    
Sbjct: 123 LAVEHPSPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGGRERLVPIS 182

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKF 292
              +      +               +    I                    S H +R  
Sbjct: 183 DRARAAVAVWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHA 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   + GA    L +  G   +   + YT    R         R+  +V+S  P
Sbjct: 243 FATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSR---------RLVELVNSRHP 289


>gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 340

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 100/332 (30%), Gaps = 14/332 (4%)

Query: 16  TRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           T+ G+    +R       ++  L    ++        A   +            +   L 
Sbjct: 6   TKSGRWYVQYRVPGLSSPKKDYLGNNPDAQEQALKRQAEIATGHIYTVAALSNFRQIYLD 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TP 130
            L   Y           +   + +   +   +         +I+   I          + 
Sbjct: 66  DLGQCYLDFLKIKDKTTSWIGTLKYLLNEHFLPVLCHSPVDQISFTDILKVAARFADKSA 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  +++ S+ V+F++ +R E    +P    ++ KR+ +     T +D+ +  +   +  
Sbjct: 126 ATQNRYMDSLHVIFRFGIRHELTTNDPMAHWQK-KREPQRNMLLTIKDLAKIYAAAPDHL 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLLAM 247
           +  +  E+ L +    S+      Q +  +   I+ + T    +   + L   F   L  
Sbjct: 185 KWIIEVEWALGTRPGKSELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKARLLD 244

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                ++ +I     +         FK    KA ++     + +R   A+     G    
Sbjct: 245 KRDVAQSPYIIEVNGRG-IQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLK 303

Query: 306 ELMATYGWKTVDQAE-TYTKGAD-RIRLGIKN 335
            +    G  +      TY           +  
Sbjct: 304 AVSKLLGHSSTRMTADTYYHELQGEKERALSA 335


>gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15]
 gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
 gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15]
 gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5]
          Length = 291

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123
             L + +  +         +   + +     +    + D RK+T++ +   +        
Sbjct: 12  GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E R+    +   ++ ++R   KW         N  +    PK + + ++   +
Sbjct: 71  KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRRKEVKALDE 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
             +Q+  +     ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    
Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V   D   +LL     GK+      D             K    K  +    H +R   A
Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T+S   G     L    G K +   + YT   
Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270


>gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108]
 gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108]
          Length = 340

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 102/360 (28%), Gaps = 46/360 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            V K+ T+ GK +  F    G+R+R         + F     +     +     + S   
Sbjct: 2   GVRKDSTKGGKWLAEF-YHDGKRVRKWFVTRGEATRFFNQEQAKNATQSENVRVVLSNDL 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            P  L     E+ +     +L      +  +    +    GD    K TT+      + R
Sbjct: 61  AP--LSHYAHEWYELYG-QTLNDG--QARLNKLLNLCSHLGDPPANKFTTQDFAEYRKKR 115

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                          S+  +    +R +F         + +  LS     ++ E    + 
Sbjct: 116 LAGKFSADPKRPPKQSTVNREHAYLRAVFNELKSLGKWSGDNPLSEISLFKENETELAFL 175

Query: 176 KEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             D  +      + S+ +   L     L +G R S++ +     +     +    K+G  
Sbjct: 176 FGDEIRRLIDECDNSRNKDLGLITRICLATGARWSEAEQLKQAQVIPYKITYINTKSGKN 235

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHG 288
            T+ +      +L                           F+    +AG++       H 
Sbjct: 236 RTIPISPELYNMLPQRRGRLFGDAYE-------------AFENAVDRAGIDLPKGQLTHV 282

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +R   A+     G     L    G  T++    Y            +     S+    +P
Sbjct: 283 LRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYAH------FAPSHLESAVSLNPLTNP 336


>gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 418

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +A   S  +        +          +        + +++ + ++E     +  
Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162

Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +GD     +I  +            P           ++A  + +  +   K A    Y
Sbjct: 163 FAGDTLLFSQIDNRLAEDFKFFLLSAPCGGSKKGTISRNTASTYFSIFKAALKQAFIDGY 222

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + I+    ++  + +       T +++ +  +   E    + A  F   +GLR  D  + 
Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +       K   T             +                 +   N +  S  
Sbjct: 283 KWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +A   KAG+  + S H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402

Query: 331 -LGIKNSR 337
                  +
Sbjct: 403 NKAANAIQ 410


>gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1]
 gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1]
          Length = 341

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 87/309 (28%), Gaps = 36/309 (11%)

Query: 53  GSTPKREYINSPRKKPTTLKWL------ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
                ++ +            L      + ++        ++ ++  ++ +   Q+    
Sbjct: 9   QQLENKKQLEDSLATKPVFAELEALLPPVEQWLSELSVRQMSAHTIDAYYAGLYQLACFL 68

Query: 107 GDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                           K+I   +++     SS  Q L+++R  + W + Q    INP   
Sbjct: 69  AQAQLNWTRCDKRQLAKYIAKRLDTDALAISSVQQELSAIRHFYSWLIEQGQARINPTTG 128

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRA 212
            +  +           + + Q        +        + +  FE L  SGLR  +    
Sbjct: 129 YQLKRAPRPLPSIADGDLIAQLLEQPMPDTPEQARLWIRDKAMFELLYSSGLRVGELVGL 188

Query: 213 GVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIGKETFFIN--------- 258
            V  L+ +    + +            V +    +K +      +  +            
Sbjct: 189 NVADLRIDAKGERGEVRVTGKGNKTRLVPVGRQALKAINRYLPHRNLWEERGDRALFISE 248

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTV 316
               ++         K  A +AG+ ++   H +R   A+           +    G   +
Sbjct: 249 KHGTRLTTRAVQQRLKVAAARAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDI 308

Query: 317 DQAETYTKG 325
              + YT  
Sbjct: 309 STTQIYTHV 317


>gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 321

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 99/291 (34%), Gaps = 33/291 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--------------DFDYRKITTKH 118
           L+SEY        SL++ ++ S+      ++                  D    ++ +  
Sbjct: 15  LLSEYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHD 74

Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           IR  +    H   +  S  + L++ R  +++ +R  +   NPC  +  PK   +     +
Sbjct: 75  IRHFIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALS 134

Query: 176 KEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GT 231
            ++  Q        +  ++    FE    SGLR ++  R     +  +   ++       
Sbjct: 135 PDEAAQLLAFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGKGSK 194

Query: 232 IITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVN 283
              V + +  ++ L      +  +        F++   Q+++    ++    +A    ++
Sbjct: 195 TRIVPVGEPALRALQAWLPLRSAWLTSGETALFLSRHGQRIHPRTIAVRLHQRARLQNLD 254

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   A+    +      +    G  ++   + YT   D   L 
Sbjct: 255 DRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH-LDFQHLA 304


>gi|254228199|ref|ZP_04921628.1| Integrase [Vibrio sp. Ex25]
 gi|262394055|ref|YP_003285909.1| integrase [Vibrio sp. Ex25]
 gi|151939272|gb|EDN58101.1| Integrase [Vibrio sp. Ex25]
 gi|262337649|gb|ACY51444.1| integrase [Vibrio sp. Ex25]
          Length = 401

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 92/357 (25%), Gaps = 44/357 (12%)

Query: 20  KIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYINSPR--------KKP 68
           K  +Y+R    +R  L                    G     + +   R        +K 
Sbjct: 41  KYYFYYRLNGKQRNYLLGAATSLTPAQARDLAKEKAGLVAGGQDVQETRFEAKREALRKT 100

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125
            TL+  + E+ +S    +L   +            +        +IT   ++        
Sbjct: 101 LTLERFLDEHYESY-LQALNPKTAKQSFMCIKSSFKHLAHKPMSEITAWDVQQWVSEKRK 159

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------- 177
                S+       ++  F  AV  +++  +   SV+  K   + IR  +          
Sbjct: 160 LGRASSTISYAYNRLKAAFNRAVEWDFIDSHTLSSVKIVKEDDQRIRYLSTAEETALLDS 219

Query: 178 --------DMQQFKSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                      Q ++   E  + R A          + +G+R  +      +H+      
Sbjct: 220 LKVRDIRLRENQKQAHRQEVPKLRYADYLEPLIVMAINTGMRKGEMLSLCWEHINFENRY 279

Query: 224 IKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKA 277
           +             T+ L D    +L        +                +   ++   
Sbjct: 280 LTITSANAKSKKRRTIPLNDTVFSMLNDWKAQNYSEESGLVFTSNGKPIDTYQYQWEQLL 339

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             A + N   H +    A+    A    + +    G   +     Y   A   +   
Sbjct: 340 KDANIQNFRFHDLCHHFASKLVMAAVDLNTVRELLGHADLKMTLRYAHLAPEHKASA 396


>gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 406

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 108/387 (27%), Gaps = 48/387 (12%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            P             R    +     R   G+R R+     +         LT    K++
Sbjct: 1   MPRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRI--TRSAATQNEARKLLTKLKGKQD 58

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI--TT 116
                     TL+  ++E+ +     + A  +  S+       +    G     ++    
Sbjct: 59  SHTLIIGGRGTLRDWLNEWLELFIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQP 118

Query: 117 KHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +  ++   S        ++      +R     AV+ + +  NP L  +     +     +
Sbjct: 119 ETFQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESNPILGTDAVGFVSGETAVF 178

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIK 225
           + E  +QF    +EG +    F   L  GLR  +      +          ++  +  IK
Sbjct: 179 SGEQGKQFL-KTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIK 237

Query: 226 TQKTGTIIT------------------------VELPDGFMKLLAMTPIGKETFFINNDK 261
                                              L     + LA     K++ ++    
Sbjct: 238 LPGDEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSP 297

Query: 262 Q--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++    S  F      AGV +   H  R    T+    GA    +    G   +  
Sbjct: 298 NGAPLHERNISEAFHLACDHAGVPRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLST 357

Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345
              YT     I +      R+ S+ DS
Sbjct: 358 TRRYTHTP--IEVTRPALARLESLFDS 382


>gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 322

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 90/277 (32%), Gaps = 16/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E   S  + P T    +  +  +      +  +   ++   + ++ +      RKITT+ 
Sbjct: 34  EDTVSKVEVPNT--EFLKMFLDAKKIEGCSDRTLQYYKVTVEHLLSQI-KTSVRKITTEE 90

Query: 119 IRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR+ +       K +  +      ++   F W   ++Y+  +P   + + + KT      
Sbjct: 91  IRAYLADYQKNSKCSNVTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRTKTVVKSVI 150

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233
           T E +++ +    E  +     + L  +G+R  +     +  +       +   K     
Sbjct: 151 TDEGIEKLRDNCME-IRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGRECVVYGKGDKER 209

Query: 234 TVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
            V         L      ++          +    ++  +   I  +    K  + +   
Sbjct: 210 RVYFDAKSKVHLMRYIAERKDANPALFVTLDAPHDRLKISGVEIRLRQLGRKLELERIHP 269

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002]
 gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002]
          Length = 289

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 89/277 (32%), Gaps = 14/277 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                      TT   ++  +         +  ++ ++       +         +IT  
Sbjct: 8   EPITQGRLTTATTDNEILKRW-----ASQKSSATQKTYFYIVRNFMAAIA-KPLNQITLD 61

Query: 118 HIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +   ++S +  + ++    +  +R LF +     Y+ +NP   +++PK     I     
Sbjct: 62  DLLDWLDSLQWQSQNTRRNKIAVIRSLFGFCHATGYITLNPAKLLQQPKENDCRIERIIT 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTI 232
           +   Q  +  ++  +  L  + L   G+R S+              +        K   +
Sbjct: 122 KPKVQAMAMNADTLRNELIIKTLYLLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKV 181

Query: 233 ITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
             + +P      ++ L        +    N+  K++  Q     KA   + GV  S H +
Sbjct: 182 RFIVVPTGLWDELEALRNDSAYVFSSRKGNNGSKLSRIQVYRVVKANGDRVGVQVSPHFL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   AT S   G   H L  + G   +     Y   +
Sbjct: 242 RHSHATHSLKNGCDLHLLSESLGHGNIAITSRYLHAS 278


>gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
 gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233]
          Length = 353

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 92/331 (27%), Gaps = 62/331 (18%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD 110
            P RE + SP +    L   +  Y         +A N+ +S+    ++ ++     G   
Sbjct: 4   NPAREAVASPVEPSPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTR 63

Query: 111 YRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
              +T   +   +   +           SSA + + + R   ++ + +     +P   V 
Sbjct: 64  VADVTAADVSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVH 123

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            P       +    E + +              G + R   E L  +G R S+     V 
Sbjct: 124 PPTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVD 183

Query: 216 HL-------------------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            +                                   K      V +    ++ L    +
Sbjct: 184 DIDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLV 243

Query: 251 GKETF---------------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                               F+N    +++           A +AG+     S H +R  
Sbjct: 244 RGRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHS 303

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT   + GA    +    G  +V   + YT
Sbjct: 304 FATHLLEGGADVRSVQELLGHASVTTTQIYT 334


>gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1
 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia
           solanacearum GMI1000]
          Length = 329

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 82/298 (27%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKH- 128
           I  Y  +  +   L+ ++  S+      +     R +   D  ++   HIR  +      
Sbjct: 20  IGAYLDALKFERKLSQHTLASYARELAVLQQLGARFAAGIDLMRLQPHHIRRMMAQLHGG 79

Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S  + L++ R  ++W   R   V  NP   +  PK      +  + E        
Sbjct: 80  GLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALMEQ 139

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
                 E  + R   E     GLR S+     ++H Q   ++  +               
Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREVTVLGKG 199

Query: 234 --------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAK 276
                          +         LA      E         +       Q     K  
Sbjct: 200 NKRRTVPVGSKAAEALAAWLAVRPQLAQPDAAPEDAHALFLSARGKRLAQRQIQTRMKRN 259

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT-SLDFQHLA 316


>gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 355

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 111/342 (32%), Gaps = 40/342 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++T+  K ++Y+    G R                Y         +   + S      T 
Sbjct: 7   DKTKTWKAVFYYTNYKGERSQTTKRGFKTKKDAQEY--------EREFLLKSTFNLGMTF 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---- 126
           + L   Y +      L  ++ ++ +   ++  +    D     IT   +R+   +     
Sbjct: 59  QSLYDLYIEDMQPR-LREHTLLTKKKIIEKKILPFFKDMTLESITAVRVRAWQNTLLNGV 117

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180
                 ++ +        +  +F +AVR   +  NPC       +K    +  WT E+ +
Sbjct: 118 TRHNNPYSQTYIRTICNQLTAIFNYAVRFHSMRENPCHRAGTIGKKRAEEKNIWTPEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           +F +          AF+ L ++GLR  +     ++ +     +I   K+           
Sbjct: 178 KFVALIEHKIPSYTAFQILFWTGLRIGELLALSIKDIDFENKAIVVNKSYQRLGSRDVIT 237

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                    TV++ D  ++++             +         F    K  A KAGV K
Sbjct: 238 APKTEKGKRTVDISDELLEIIEKYLKRLYKPKKTDRLFPYTKHTFENDMKEYAVKAGVKK 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H +R   A+   + G     +    G + V    ETYT 
Sbjct: 298 IRLHDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTH 339


>gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM
           15897]
          Length = 335

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 90/310 (29%), Gaps = 39/310 (12%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
              L++++         + + N+  S++      I    D        F   +I  + I 
Sbjct: 6   FAVLVTKFLTEYLPLHRNCSKNTISSYKDSLKLFILFLRDHKSMNINKFKMHQINRELIL 65

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTEGIRPW 174
             +E    R ++P +    L  ++    +A  +       +   LSV+  K  T  +   
Sbjct: 66  EFIEWLENRGNSPVTINHRLAGIKSFINFAQYESVENLAYLQTVLSVKSLKTTTRQVDYL 125

Query: 175 TKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQK 228
           T+E M    +     +    + R+    L  +G R  + C   ++ +            K
Sbjct: 126 TEEQMNNLINLPPTDTSTGIRHRIIMCLLYDTGARVQELCDLKIEDINLGNNPTVKLHGK 185

Query: 229 TGTIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKA 280
              I  V +     ++L +                  N + Q+M+        +  AT  
Sbjct: 186 GSKIRIVPISKNMNQILEVYISKFFSDIKLKNEYLIKNKNNQQMSRDGIEYIVQKYATIL 245

Query: 281 GV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                        H  R   A            +    G + +     Y +   R +   
Sbjct: 246 KNNDPSFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKK--N 303

Query: 334 KNSRRISSVV 343
           +    ++  +
Sbjct: 304 EAINNLAPKL 313


>gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 336

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 111/319 (34%), Gaps = 21/319 (6%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR    +  +    Y   +  +   +E+ + P  +   L
Sbjct: 10  KKLDDGRYEVDVRPRGTSGKRIR-RKFNRKSEAQTYEKYVLTNFHDKEWQDKPADRRL-L 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             LI+ +     +     N   S++   ++I R+ G+    ++T   +     SR H   
Sbjct: 68  SDLIALWW---SYHGKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGV 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  +  +   +M  +F+  +  E +   NP   V + + +   +   ++E+++       
Sbjct: 125 SAGTVNRDFCTMSSMFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMA-- 182

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R  ++     +H+ +N  +    KTG   TV +       +  
Sbjct: 183 LTGDDRRVVVLCLNTGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILT 242

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              GK            N  +     +         ++ H +R   AT     G     L
Sbjct: 243 RKSGKLFDT--------NYERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITL 294

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  T++Q  TY   A
Sbjct: 295 QRILGHTTIEQTMTYAHFA 313


>gi|190573348|ref|YP_001971193.1| putative prophage integrase [Stenotrophomonas maltophilia K279a]
 gi|190011270|emb|CAQ44883.1| putative prophage integrase [Stenotrophomonas maltophilia K279a]
          Length = 413

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 96/354 (27%), Gaps = 25/354 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59
           P    + T  G+      Y    G  R+  L    E T   A        A         
Sbjct: 41  PGFLCKITPAGRRVFMLQYRTNAGQSRKPSLGLYGELTIEQARVMAQDWLAEVRRGGDPG 100

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+  L  ++ +         ++   +++  D+ II   G      +    
Sbjct: 101 GAKAEARKAPTVAELCKKFMEDYSKKRNKPSTWRGYQAVIDRCIIPMLGRKKVADVKRPD 160

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   +E   + P+ A +    +R +F  A    +           P            +D
Sbjct: 161 IAGYMEKLSYKPTEANKGFAILRKMFNLAEVWGFRPDGTNPCRHVPMYPPGKKTRLIVDD 220

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          L+         R S+ C      +  +   +    + 
Sbjct: 221 EMVLIFRQLEKLEAEGLENYVIPLSIRLQFEFAGRRSEICTLEWDWIDLDNRRVMWPDSK 280

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284
           T    +        L  T   +E                +       +      AGV   
Sbjct: 281 TGGMSKPMSAEAHWLLSTAPRREGCPYVLPSPNDPTRHLTFGEHYGGWCRVLKAAGVPHV 340

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             HG+R  SAT  A++G      M     KTV Q   Y    D+ +R   +   
Sbjct: 341 GTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYVHTEDKPVRDAAELVA 394


>gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 322

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 98/291 (33%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A +  L     KR   + P KK  + +  ++++ ++      +  +   ++   +Q+++
Sbjct: 18  AAQLKRLQEVLLKRLVKDEPEKKMISNQEYLNKFLEAKKIEGCSERTIKYYKVTVEQLLK 77

Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K      RK+TT+ +R  +   +       ++      ++   F W   ++Y+  +P   
Sbjct: 78  KVLH-PIRKVTTEQMREYLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRR 136

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + + + +       T ED+++      +  +     + L  +G+R  +  R     +  +
Sbjct: 137 IHKIRAEKLVKNVITDEDIER-LRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRADINFS 195

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWF 273
                          V         L      +           +    ++  +   I  
Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKIHLINYLKSRTDDNPALFVSLDRPYSRLKISGVEIRL 255

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    K  +++   H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 256 RQLGRKLNLDRVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14]
          Length = 291

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------- 123
             L + +  +         +   + +     +    + D RK+T++ +   +        
Sbjct: 12  GDLYNAFINALVLAGAGNGTIKLYSTAVKDFLDFI-NKDPRKVTSEDLNKWISNLLNREG 70

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E R+    +   ++ ++R   KW         N  +    PK + + ++   +
Sbjct: 71  KVKGDEVEKRRAKSVTIRYYIIAVRRFLKWL--------NVSVKPPIPKVRGKEVKALDE 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234
             +Q+  +     ++ +L    LL +GLR ++     V+ +   NN+  ++  K G    
Sbjct: 123 SQIQKVLNTCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERV 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V   D   +LL     GK+      D             K    K  +    H +R   A
Sbjct: 182 VFFTDETKQLLRKYMKGKKLDEKLFDI---TYDALYRKLKRLGNKVEIELRPHILRHTFA 238

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T+S   G     L    G K +   + YT   
Sbjct: 239 TLSLKRGINVITLQKLLGHKDIKTTQIYTHLV 270


>gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis
           str. MC2 155]
 gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155]
          Length = 318

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 88/293 (30%), Gaps = 40/293 (13%)

Query: 71  LKWLISE----YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KH 118
           L+ ++ E    Y         +A N+  S+     +            +           
Sbjct: 7   LRAVLDEQVQGYLDHLTIERGVAANTLSSYRRDLRRYAEHLRQRGIDDLARVAESDVSDF 66

Query: 119 IRSGVESRKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + +          +A       + + ++R L ++A  +     +   +V+ P       +
Sbjct: 67  LVALRRGDPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLPK 126

Query: 173 PWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             T +++          S        + R   E L  +G R S++    V  +     S+
Sbjct: 127 SLTLDEVLALLEAAGGDSEADSPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSV 186

Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272
               K G    V +    +  L    +                F+N    +++       
Sbjct: 187 LLHGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 246

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  A +AG+    S H +R   AT   D GA    +    G  +V   + YT
Sbjct: 247 LQDSAERAGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299


>gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 368

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 115/371 (30%), Gaps = 49/371 (13%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           ++    T  G   +   +R   GR+ R      S       +    +  +    +   + 
Sbjct: 3   WIKTRVTDDGDTRFVACYRDPEGRQ-RSAGTFSSRRAAERAAHREEAKVREGAWHDHSRG 61

Query: 68  PTTLKWLISE-YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE- 124
             T    +   +  S H  +   ++  ++ SY     I   G     KI    I+  V  
Sbjct: 62  QVTFAEYVETVWLPSKHVET---STLAAYRSYLDRHFIPTFGRRPMGKILPSEIQRWVTT 118

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +P+S  ++ T +  +F+ A+R   V  NPC+  E PK   +  R  T E+    
Sbjct: 119 ATEHGLSPASVRKYHTMLHSVFERALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAI 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   E  Q RL  E  + +GLR  +      +HL      +  ++T   ++++      
Sbjct: 179 LTALPE--QHRLMVETAINTGLRWGELIALKPRHLDLIKRQLTVEETVVEVSIKNSPTGH 236

Query: 243 KLLAMTPIGKETFFIN----------------------------NDKQKMNATQFSIWFK 274
           ++L                                          +   ++   F     
Sbjct: 237 RMLTKPYPKDNEARTMGLPADLVDQLADWITTRRLRLDDLLFATREGTPISRNTFRTRVW 296

Query: 275 AKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADR 328
             A +A     +   H +R   A+     G+    +M   G   +   + Y      AD 
Sbjct: 297 LPAIRASGVDFDVRVHDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKYLHALPDADA 356

Query: 329 IRLGIKNSRRI 339
             L      RI
Sbjct: 357 KNL--DALNRI 365


>gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
 gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32]
          Length = 326

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 98/312 (31%), Gaps = 32/312 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--G 107
            +G   + +        P  ++ +++ Y +       L+ ++  ++      ++     G
Sbjct: 5   RSGRARRPDLRALRAALPEPVRAVVTAYERHLGLERGLSAHTVRAYVGDAVSLLGFVVDG 64

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             +  ++    +R+ + +++   +S     +   S R    WA R   +A +P   +  P
Sbjct: 65  GSEVAELDLARLRAWLAAQQSGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAP 124

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGV-Q 215
           +               +     + G         + R   E L  +G+R S+ C   V +
Sbjct: 125 RAHRTLPGVLRAGQAGEVMQASAAGAAQRDPVALRDRAIVELLYATGIRVSELCGLDVGE 184

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------------DK 261
              +        K G    V       + LA          I                  
Sbjct: 185 ADFSRRVVTVLGKGGKERVVPFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRG 244

Query: 262 QKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++++            T     ++   HG+R  +AT   + GA    +    G  T+   
Sbjct: 245 KRVDPRAVRRVVHDAVTAVPGALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATT 304

Query: 320 ETYTKG-ADRIR 330
           + YT    DR++
Sbjct: 305 QLYTHVTVDRLK 316


>gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 280

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 18/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141
            +L  ++  ++ +     +  +   D   +TT  +   +  +K    +P +   + + +R
Sbjct: 16  RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
             +K  +++ +   +            +     TK ++           + +     +  
Sbjct: 75  FFYKKILKKNWDDDDIPRMKRD----RKLPTVLTKTEISAILDAT-PNLKHKAMIATMYS 129

Query: 202 SGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            GLR S+        +        I+  K+ +     L D  +++L              
Sbjct: 130 GGLRVSEVTHLHYDDISRTKKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRGIL 189

Query: 260 DKQKMNATQFS-----IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
                     +      +F+  A +AG+  + S H +R   A+   ++G     + A  G
Sbjct: 190 FPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLG 249

Query: 313 WKTVDQAETYTKGADRIRLGI 333
            +     E Y   +++  LGI
Sbjct: 250 HRDPKSTEVYLHVSNKTLLGI 270


>gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 324

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 47/309 (15%)

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI 119
            T   L   +          +  +  ++    D+ +   G             +++   +
Sbjct: 1   MTGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADL 60

Query: 120 RSGVESRKHTPSSAIQF------------------LTSMRVLFKWAVRQEYVAINPCLSV 161
           R+ +        +  Q                   +++MR  +++  R+  V       +
Sbjct: 61  RAWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLL 120

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214
             P+ K+   RP ++           +        ++    F  L   GLR S++    V
Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180

Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-- 268
           + L +        +   K G    V +     ++L            +            
Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240

Query: 269 ----FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    +A    AG+    + H +R   AT   + GA    +    G  ++   + Y
Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300

Query: 323 TKGADRIRL 331
           T  AD  RL
Sbjct: 301 T-LADEARL 308


>gi|22538023|ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae 2603V/R]
 gi|22534925|gb|AAN00747.1|AE014276_28 prophage LambdaSa2, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 2603V/R]
          Length = 356

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 96/340 (28%), Gaps = 30/340 (8%)

Query: 14  ERTR-HGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            R R +G   Y   ++   G+  R       T   A  +A+     K+   N       T
Sbjct: 4   YRKRENGLWEYRISYKTIDGKYKRKEKGGFKTKKLAQAAAIE--IEKKLTQNILTNDEVT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L   +  + +      +   +  ++   F  I     +   + IT  + +  +       
Sbjct: 62  LYDFVKTWSEVYKRPYVKDKTWETYSKNFKHIKNYFQELKVKDITPLYYQKKLNEFGEKY 121

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-----RPKRKTEGIRPWTKEDMQQFK 183
           +  +  +F   ++   K AVR++ V  N     +      PK + E      +       
Sbjct: 122 AQETLEKFHYQIKGAMKVAVREQVVTFNFAEGAKVKSQVEPKNEEEDFLEEREYKALLAL 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
           +  +           L  +GLR S++       +      +   K+              
Sbjct: 182 TRENIQYVSYFTLYLLAVTGLRFSEAMGLTWSDIDFKNGILDINKSFDYSNTQDFADLKN 241

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
             +   V +    + +L           I N      +       K      G     H 
Sbjct: 242 ESSKRKVPIDSNTIDILREYKKNHWQANIKNRVCFGVSNSACN--KLIKKIVGRKVRNHS 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
           +R   A+     G     +    G ++ D   + YT   +
Sbjct: 300 LRHTYASFLILNGVDIVTISKLLGHESPDITLKVYTHQME 339


>gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
 gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM
           12042]
          Length = 343

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + LIS++  +      +  +   +ES   ++  K  +     +TT  +R       +   
Sbjct: 66  EELISKFISAKEIEGCSKRTTKYYESTLIKMNEKI-NMSITYMTTDDLRTYLTDYQKMNN 124

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +S      ++   F W   + Y+  +P   + + K        ++ E ++       
Sbjct: 125 CSKASVDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLEL-LRDSC 183

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     + L  +G+R  +  +  +  +                  V         L 
Sbjct: 184 TSLRDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLK 243

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                +           +    ++  +   I  +    + G+     H  R+  AT + D
Sbjct: 244 NYLNTRNDDNPALFVSLDLPHDRLKISGVEIRLRQLGRRLGISKVHPHKFRRTVATKAID 303

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++ +  G   +D    Y 
Sbjct: 304 KGMPIEQVQSLLGHSQIDTTMHYA 327


>gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 311

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 31/290 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR 120
           P   P T   L+ EY         L   +  S++                  + T ++I 
Sbjct: 2   PSPAPATNLQLVREYILYLRVERGLRPLTLESYQGDLYAFSEHLDSLHTSLLQATQENIA 61

Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S +   +       S  + L+ +R  ++W +  + +  +P L++E P       +   + 
Sbjct: 62  SFMAHLREHDQESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAES 121

Query: 178 DMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT 226
           ++++               +   +       L   GLR ++ C   V+ L  +   +   
Sbjct: 122 EVREMLDRTGVAAHSQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVR 181

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAK 276
            K      V L D  ++ L +                  F++   + +         K+ 
Sbjct: 182 GKGDKERIVPLADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKST 241

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A    S H +R   AT   + GA    +    G   +   + YT  A
Sbjct: 242 NQLA----SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLA 287


>gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
 gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15]
          Length = 324

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 77/288 (26%), Gaps = 28/288 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKI 114
            +R     P     ++   +  +  +      +  +  S+ +         G      ++
Sbjct: 3   ARRIQQPQPEVLSKSVADAVESFLSALEASGASKLTLKSYRAALQSFASHVGPSRPVSQL 62

Query: 115 TTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           +     S +   +             S+   +   +R   +W              +   
Sbjct: 63  SQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQW---------LGISGLPAE 113

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            ++             +     +      L    +  SGLR  +        +       
Sbjct: 114 PQRRSEFSGALSWKEVEAMMSKARDLYDLLILSLMAESGLRAREVVNLTWGDIDLAKGEA 173

Query: 225 KTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + +        V L      +L++ P G     +     K++        K+ A +AG++
Sbjct: 174 RVRGKYGKERLVVLGQVARSVLSVLPPGGPNERVV----KLSYQAIYDRVKSLARRAGID 229

Query: 284 KS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            S    H +R   AT +   G +   L    G   +   + Y    D 
Sbjct: 230 VSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDE 277


>gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264]
 gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264]
          Length = 356

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 37/348 (10%)

Query: 15  RTRH-GKIIYY-FR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           RTR  GK  YY F     G+R  +     +T   A            +  NS  +   TL
Sbjct: 2   RTRKIGKKWYYNFDIYIDGKRKIIEKVGGNTKKEAIEKGEIAKKDYEQTSNSFSQSIATL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             LI +YRK+     L  N++     YF+ II+  GD   +K+  +  +  +   K    
Sbjct: 62  SDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDTKLQKMNVRFFQDYIVKTKD--- 118

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   +  LF +AVR E ++ NP  +V  PK +       T  +  +          
Sbjct: 119 -PNNIKKFLNSLFNYAVRVELISKNPIKNVIVPKAEKIDFDLIT-PEDIEIIKNMEIREV 176

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN----------------------NIFSIKTQKT 229
            +    F+  +G+R S+      +++                           S K +  
Sbjct: 177 LKDFILFIYLTGVRPSEGLALEFKNINFKDKTISIERSINKYKRNLFEPLKNNSSKRKIL 236

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVN 283
              I  ++       +       E ++ ++     +         F+        K   N
Sbjct: 237 FNDIIEDIFTRRKSAIEKLIDKSEGYYKSDLIFANSKGNTFIISDFNKEKYKIKEKINKN 296

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                +R    T+  + G     +    G   +    E Y    ++++
Sbjct: 297 FHFRALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMK 344


>gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 348

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 18/344 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS---------PR 65
           R  +G     +R   G++    +        A                S           
Sbjct: 6   RKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGPVPPSTPEAISEVVAV 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122
                L  L   Y  +       V +     S+    +I         +I    I +   
Sbjct: 66  ADKIYLDQLAQMYINTRKVEGTTVKTLNEIRSFLKKHLIPVFAQRPIDEIRYDEILTIVG 125

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
                H+P +  ++L+ ++ +F++ V+Q+ +  NP    ++ K      +         +
Sbjct: 126 KAYADHSPVTRGRYLSYLKTVFQFGVKQDLIEKNPLRHWKKAKEHPRDTKLTVADLMKIK 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +         +A+   + +G     + +        +   +   KT +   + +   F
Sbjct: 186 AVAAPHLAWAIEIAWNLGVRTGESELFALKWADVDWAQSTVKVFATKTKSARVIPISPEF 245

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
           M  L       +T ++     +    QF + F++   +A +      + +R   AT    
Sbjct: 246 MARLKEMQGRAKTEYLIEYAGRP-VKQFRMSFRSACKRAEIPYHVVLYDIRHLLATTLLQ 304

Query: 300 AGATAHELMATYGWKTVDQA--ETYTKGADRIRLGIKNSRRISS 341
            G     +    G  +V     + Y    D  R  I     +++
Sbjct: 305 EGGDLSAVSKLMGHSSVHMTANQYYHLLGDEKRRTIAKLPSLNA 348


>gi|228961350|ref|ZP_04122965.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798308|gb|EEM45306.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 353

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 105/343 (30%), Gaps = 39/343 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K++ R G   +  R     G  ++++              + +         +     
Sbjct: 3   IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKM--------LVEKETN 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T   +   Y           +S ++  +   + ++ + G      +T KH+ +    
Sbjct: 54  SSLTFAQVADSYFDWY-CQRRKESSIVTIRNVIYNHLVPEFGKVKIDHLTPKHVMNYQNK 112

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K++  S  +F T++  +  +A++   +  NP       ++++     + + D  +  
Sbjct: 113 VINKYSADSLKKFHTTLSAILNFAIKFYGLPNNPARIAGNFEKESNKRMNFWEFDEFKQF 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231
               E    +  F  L YSG R  +        +              N    K +   +
Sbjct: 173 IKVVEDPLYKAFFSTLYYSGARKGELLALTWADINFEKKTIDINKTEFNRQITKPKTKSS 232

Query: 232 IITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LP   M LL           P+  +     +    +  T     ++   T A V 
Sbjct: 233 NRIIMLPTHVMSLLKDLQKYVTLNMPLKNDYVVFGDFYNSIAITTLRENYERFLTTADVR 292

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 293 KILLHEFRHSHASYLINKGVSPLVVAQRLGHSNVSTTLNTYSH 335


>gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756]
 gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 322

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
             +  +  +      +  +   +    + +  K  +   R+ITT+ IR+ +       + 
Sbjct: 46  DFLQMFLDAKRIEGCSERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRC 104

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +      ++   F W   ++Y+  +P   + + K KT      T E +++       
Sbjct: 105 SNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK-LRDNCA 163

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +     ++ +       I   K      V         L  
Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               ++          +    ++  +   I  +    +  +++   H  R+  AT + D 
Sbjct: 224 YIEKRKDNNEALFVTLDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDK 283

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306


>gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
 gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1]
 gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila
           psittaci Cal10]
          Length = 299

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L+ NS  ++       ++ +      +I+   +   V+         ++  + L +++
Sbjct: 22  RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQPRL 194
           V F++    + +   P +  E PK         T +++           +     ++   
Sbjct: 82  VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244
               L  +G+R S+ C   +  + ++   +  + + T +                 F + 
Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASKAIDAYLCPFREN 199

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L      +   F++   +K+  +         A +    + S H +R   AT   D  A 
Sbjct: 200 LQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G   +   E YT  A
Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282


>gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 385

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 111/372 (29%), Gaps = 55/372 (14%)

Query: 11  VTKERTRHG-KIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   + G K   Y          G  +R                + L     +  +I 
Sbjct: 2   IKKYTKKDGSKAYMYVAYLGVDPLTGKQKRTTRRGFKTKREARIAEAQLLAEIKENGFIE 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           SP+    T + + + +       ++  ++    +      I+ K G     KITT++ ++
Sbjct: 62  SPK--QMTFEQVFNLWIPIYE-TTVKESTFQMQKDVIRLHILPKFGQARVDKITTQYCQT 118

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            V       S     +   + + ++AV     +  NP   V RPK+K E      K    
Sbjct: 119 IVNEWFGYYSKYSNLIGLTQRILEFAVNNLNLIKDNPMKKVIRPKKKNELREDKYKAPTY 178

Query: 181 QFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             K            +  Q  + F  + Y+G+R  + C            ++  ++T   
Sbjct: 179 SAKQLNDFLEKVKELDPGQMYVVFRIIAYTGMREGEVCGLKWTDFDEVNGTLAVRRTVAR 238

Query: 233 -----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------ 269
                             T+ L    +++L      +            +  QF      
Sbjct: 239 GKDYKKILQNTKSVAGQRTIPLDQETIEVLKNWKKTQRIEMFKLGFNTNHKDQFIITNEF 298

Query: 270 ---------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                        K    K  +   + HG+R    T+  ++GA+  E+    G +     
Sbjct: 299 NEFQYSQYPYALLKKIRKKCEIDPITVHGLRHTHCTLLIESGASLKEVQDRMGHEDESMV 358

Query: 320 -ETYTKGADRIR 330
            + Y    +  +
Sbjct: 359 LKVYLHINEEKK 370


>gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4]
 gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4]
          Length = 382

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 110/385 (28%), Gaps = 58/385 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K +T+ GK  Y F          G  +R                 AL+      E   
Sbjct: 4   INKYKTKDGKTAYKFNAYLGTDSMTGKKKRTTRQGFKTK---KEATLALSRLKLDIEMNG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGS-LAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +   +  K +   +     + + +  ++   + E + + I+   GD    KIT    +
Sbjct: 61  FKKSSTSKFKDVYELWI--VQYKNTVKESTLNKTLELFNNHILPIFGDLYMDKITVVFCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +                   +F +A+    V INP   V  P RK +           
Sbjct: 119 AALNDWYKRLQKYKAISNYASRIFDYAITISAVEINPFKKVSMPIRKVDVEEEKVLNFYN 178

Query: 181 QFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------- 222
           + +         R         F  L ++G R  +      + +                
Sbjct: 179 KEELTLFFDHLKRENKPLQLALFRTLAFTGARKGEILALQWRDINFTDNTIKINKTVTFG 238

Query: 223 ------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------- 268
                     +   ++ ++ +    MK+L      ++  +       +N TQ        
Sbjct: 239 LDNVLIIQTPKTKTSVRSISMDPQTMKILKSWKKTQKETYFKLGFNTLNPTQLVFPSTKN 298

Query: 269 -------FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                     +         + + + HG R    ++  +AGA+  E+    G   +    
Sbjct: 299 TVMQPPKVGKYLDRLVNLYELKRITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTM 358

Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344
             Y    ++ +     + + +  V+
Sbjct: 359 NIYAHVTEKAK--ENTADKFAKYVN 381


>gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C]
 gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C]
          Length = 422

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/402 (12%), Positives = 116/402 (28%), Gaps = 74/402 (18%)

Query: 14  ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + + G+           G  +R+R+               +  S              +
Sbjct: 19  YQRKDGRWEAAGYVLAANGTCKRVRVYGITRKNAADKLAEKIADSNRGLPVA----TADS 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   ++ +  S     L  N+   + +     +I   G     ++T K +R+ ++  + 
Sbjct: 75  TVGDYLTYWLGSVAVHRLRENTHTRYAACVRLHLIPGLGTKKVARLTAKDVRTFLDRLRT 134

Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                      +  +     + ++   + AVR++ +  N   +V
Sbjct: 135 TCQCCTQGLDTERKRCCAIGECCQKQLSALTVTYVHSVLKSALEHAVREDELPRNVARNV 194

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +    +    RP T  + +QF        +    +E  L +GLR  +      + L    
Sbjct: 195 KTTTHQPRRFRPLTAAEARQFLDAARAD-RLHALYELALRTGLRKGELLGLHWEDLDLTT 253

Query: 222 -----------------FSIKTQKTGTIITVELPDGFMKLLAMT--------------PI 250
                              + T+   +   + LP   +  L                   
Sbjct: 254 GTASIHRSLQRTRTGGLTHLPTKTRASERRIALPTECLHSLKEHKGRQDKERETAESAWQ 313

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
                F       ++    +  F++   +AG+ +   H +R  +AT+  + G     +  
Sbjct: 314 DSGLVFTTPTGGPLDPANLTRRFRSFLDRAGLRRIRFHDLRHSTATLLLEQGVDLVVIKE 373

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS--DDP 348
             G   +      Y     R+RL       +   + S  DDP
Sbjct: 374 LLGHAHIGVTAGVYAHV--RLRLQRDAIDTLGHAIGSQEDDP 413


>gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
 gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061]
          Length = 342

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 92/294 (31%), Gaps = 34/294 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSG 122
           + P TL+  +  Y  +      +  ++ ++       +      D R   +++   + S 
Sbjct: 2   ETPPTLRQQLEAYLDTVVDRGYSKRTQEAYRERLRPFVDWCELRDVRHAPQVSLALLESW 61

Query: 123 VESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI- 171
               +           +     + L+++R  F+W +++ ++  NP   +  PK +     
Sbjct: 62  QRYLRSYRKADGQYYTSGGLINR-LSALRGWFRWLLKRHHILYNPAELLTMPKEEKRLPA 120

Query: 172 ----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225
                  T+  +         G + R   E    +G+R ++     +  +     +  ++
Sbjct: 121 QVLSETETETVLMSIDIQTPLGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVR 180

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKA 275
             K      V + +  +  +                          Q +  +  ++    
Sbjct: 181 QGKGRKDRVVPIGERALAWVNRYLADVRPRLAWKYDSGYLFITLKGQPLARSTVTLMAGR 240

Query: 276 KAT---KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                 +     + H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 241 TIRQQARLNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 294


>gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1]
          Length = 386

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 114/381 (29%), Gaps = 52/381 (13%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65
             R+GK +      R   G++I     +                  +    +     +  
Sbjct: 5   TNRNGKFLIRVFTGRDISGKQIVKSTTYVPPEGTSPKKAEKLAQEYSFEFERHCKGYAQL 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-- 122
            +      L   Y ++     L   + +++ES +   I    G+   + ITT  +     
Sbjct: 65  NENMRFYELAEWYFENYAPEELKPTTVLNYESQYRNHIAPILGNKKLKDITTPMLTEFLK 124

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDM 179
              +     P S  +    ++ +++ A++Q +   NPC +V  P KR +      ++E+ 
Sbjct: 125 VLGKEHHLNPISVRKVYIVVQSIYRRALQQGFARDNPCQNVIIPKKRDSGKRYSLSEEET 184

Query: 180 QQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++F     +       +     LL++G+R  +      + +     +I    T + +  +
Sbjct: 185 KRFLHLIRDKPWDEDVKRILIVLLFTGMRIGECLGLAWEDIDFEKKTIFIHHTLSCVDGK 244

Query: 237 LP------------------------------DGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                           +     L       E  F +      + 
Sbjct: 245 CYLDSPKTKSSIRLIAMNSTVEKYLNDQQAYVEQLKMALGNKYAHPEMVFPSGQGNYRDR 304

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           +      K         + + H +R  +AT+  ++G     +    G   +      Y  
Sbjct: 305 SSVYHSLKRMTKGTEFEDMTLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYAD 364

Query: 325 GADRI--RLGIKNSRRISSVV 343
              +   RL      ++S  +
Sbjct: 365 VLRKQKIRLADTIDDKLSDEL 385


>gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 96/328 (29%), Gaps = 33/328 (10%)

Query: 15  RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R   GK     +     G+RIR           +Y   +  +    E   S      TL 
Sbjct: 5   RLSSGKWLCQCFPYGRDGKRIR-KQFATKGEALSYERRMMVNKQDTELGVS----AVTLN 59

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            L+  + +  H  +L+     S ++    I  + G+     +         E R +    
Sbjct: 60  ELVERWYE-MHGKTLSSG--ESRKTKLLAICERIGEPLAADVDKNMFAVYRERRLNGEWQ 116

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    ++  +  + +  +F    R  E+   NP   + +     + +   ++++++
Sbjct: 117 AKGRTIVKEATVNREQSYLHAVFSELKRLGEWEGSNPLDGIRQFSEGDQELAFLSQDEIK 176

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +      E     L       L +G R  ++       +  +  +    K     TV + 
Sbjct: 177 RLLVSCDESENKSLGTIVRLCLATGARWGEAQDMKQSQILPSRVTYINTKGKKNRTVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           +   K +        T          +   F    K  A +    +  H +R   A+   
Sbjct: 237 EKLFKRIPKNRGALFTP---------SYDAFKHALKRAAIELPKGQRTHVLRHTFASHFM 287

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
             G     L    G  T+     Y   A
Sbjct: 288 MGGGNILVLQQILGHSTILMTMRYAHFA 315


>gi|167648116|ref|YP_001685779.1| integrase family protein [Caulobacter sp. K31]
 gi|167350546|gb|ABZ73281.1| integrase family protein [Caulobacter sp. K31]
          Length = 432

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/379 (11%), Positives = 96/379 (25%), Gaps = 45/379 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-----ESTFIPAYMSALTGSTPKREYINS 63
           P         G+  Y  +    RR R                       G   K      
Sbjct: 26  PGFGLRVYASGRKTYLVQYRSSRRTRRLTLGIHGALTPEMARREAKIHLGGIAKGGDPAE 85

Query: 64  PRKKP---TTLKWLISEYRKS--------AHWGSLAVNS-RISFESYFDQIIRKSGDFDY 111
            +K      T++ L   Y +                 ++ +         I    G    
Sbjct: 86  EKKTNRNGMTVRELCERYMEDAEIGLVPGKRRMPKKPSTLQADRSRISSHITPLLGTRLV 145

Query: 112 RKITTKHIRSGVESRKHTPS-------------------SAIQFLTSMRVLFKWAVRQEY 152
           +++T   I   +       +                   +A + L  +  +F +A R   
Sbjct: 146 KEVTRADIHQFMRDVALGKARRDRKTKLRGRSIVRGGLGTAGRTLGLLGGIFTYAQRIGV 205

Query: 153 VAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +  NP   + +P   +   R       T  +  +         +     + L  +G R  
Sbjct: 206 IENNPVRGIPKPAVNSRYRRLSAAEYRTLGETLREAEQEGHNEKALTIIKLLALTGCRRG 265

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA- 266
           +  +   + + +     +   T    ++      +  L       +      +       
Sbjct: 266 EIEKLRWEEVDDAGRCFRLADTKEGRSIRPIGPEVFALLNHRRPADARGYVFEGDVAGKA 325

Query: 267 -TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  +     K  ++ + H +R   A+++ D G T   + A  G         Y   
Sbjct: 326 FDGVPKVWGKTIRKQLMDVTPHVLRHSFASMANDLGFTEATIAALLGHAAGTTTSRYVHN 385

Query: 326 ADRIRLGIKNSRRISSVVD 344
            D     I  + ++S  + 
Sbjct: 386 LDTA--LISAAEKVSGHIA 402


>gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 363

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 113/359 (31%), Gaps = 27/359 (7%)

Query: 1   MTPSLRLP-PFVTKER--TRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M    +   P V +     R+GK    F    +   R+I      +S  + A  ++    
Sbjct: 1   MAKREKTKYPGVYERVLIDRNGKADVAFDIAYRHDSRKIWETVGRKSEGVNASYASRIRG 60

Query: 55  TPKREYINSPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
              +   ++    P    T K     +      G  +  +   +  +   II   GD   
Sbjct: 61  ERLKHIEDNNFVAPGNVPTFKQAAHRFLTVHMAGKASAKNMTGYLEH--HIIPIFGDARM 118

Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
            KI   HI    ++ ++   +P +    +  +R +++ A     YV   P   V+ P   
Sbjct: 119 DKIRPMHIEELKKAIQNKGLSPQTEKHVIGFVRQVYRKAKLWGVYVGSIPTEGVQLPAVD 178

Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIK 225
           +  +R  T+++ +           Q        LY+G+R  +     V H+         
Sbjct: 179 SARLRFLTEKEARILLDELKKRSPQWHDIAYVSLYTGMRLREVLSLKVGHVNIAARIINV 238

Query: 226 TQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------ 278
                      + +   ++ L          F+   K   +    S  FK  A       
Sbjct: 239 MDAKAGTRAAYMNEEVQRIFLRRCDGKDTEGFVFEQKGGGHIRYISSAFKRTADMLFNEG 298

Query: 279 --KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334
              A      H +R    +  A  G   + +    G  T++  + Y+K + D  R  + 
Sbjct: 299 ITDARYKVVFHTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSKLSPDTKRDALS 357


>gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 360

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 115/359 (32%), Gaps = 31/359 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK       +           +         +  YI     + TT++  
Sbjct: 6   KTPAGSWKAVIRKTGWP-PAIKTFRTKRDAEDWARRAEDEMVRGVYIRRAGSERTTVEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124
           +  Y            ++IS     + +I+  G +    +T + +    +          
Sbjct: 65  MRRYLAEVT-SGKRPVTQISEVRRAEVLIKYLGRYSLAAVTAEIVARFRDERLAGDLDAQ 123

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180
              R  + ++    L  +  +F  A+++  +    +P L + RP       R  T  + Q
Sbjct: 124 GQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHSPVLGIRRPPPGPGRDRRLTPHEEQ 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
           +        S P L +   L   +G+R S+        +       +    K G+  TV 
Sbjct: 184 RLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRRVARLQQTKNGSSRTVP 243

Query: 237 LPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           L    +++L                 +       K  + QF+  +      AG+ +   H
Sbjct: 244 LTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPAWMKLKCDAGMADLHFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R  + +   +AG +  E+ A  G K++     YT    R    +    R+   V S+
Sbjct: 304 DLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAEDLVSKLDRLGRGVASN 360


>gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp.
           3_1_5R]
 gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R]
 gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R]
          Length = 371

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 120/375 (32%), Gaps = 37/375 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55
           M              TR+GK  Y      G    G++IR  +      I   +  +    
Sbjct: 1   MPVRRNKGEGSITTTTRNGKTYYKASVTIGYDMDGKQIRKSFGSFRKSI--VVDKINTVK 58

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS-GDFDYRK 113
            + +     ++       L   + +      ++ N+   +E  +  +I+     +    +
Sbjct: 59  YEVKNDLLEKQGDIKFGKLFLSWIQDFKKVEVSGNTFAEYEVCYRLRILPYLLANAKANE 118

Query: 114 ITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EG 170
           IT   ++    S +   + +   +    +     +A+ Q ++  NP   ++ PK++    
Sbjct: 119 ITLPFLQKYFNSLQNEWSVNVIRKTYVKINACLNFALIQGFINRNPAKGIKLPKQEKSTK 178

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229
            + +TKE+        +  +    A  F  Y+GLR  +      + L   + SIK Q   
Sbjct: 179 YKVFTKEEQDLILQTLNLRNIVDTAIYFDFYTGLRLGELLGLKWEDLDGRLLSIKRQYQK 238

Query: 230 --------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                +   + LP+  + LL+      E  F   D Q +   + 
Sbjct: 239 NIEIAEQRKTTYVLKKLKTIHSYRCMTLPNKIVNLLSNMERTSEFIFPGIDGQPLEVKKL 298

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
                A   K  +   S H +R   AT   +       +    G   +      YT    
Sbjct: 299 PRRLAAICKKLNIPHRSFHSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHVMP 358

Query: 328 RIRLGIKNSRRISSV 342
           + +   + +  + S+
Sbjct: 359 QTK--EEAANILDSI 371


>gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 388

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 110/385 (28%), Gaps = 59/385 (15%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K++ ++GK  Y++R  H    +    +  T                  I + ++   T
Sbjct: 5   IYKKKIKNGKDYYFYRLRHENLDKPADLYGRTVKELEDRIKQRKYELEHDIVNNKECFET 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128
                +++    H+  L  +++ ++E  +   ++         + +    I+    S   
Sbjct: 65  F---FTDWLFDIHFSHLKPSTKENYEGVYRMYVKNSSLSKIKVKNLKLIDIQKFYNSLVS 121

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPC-------LSVERPKRKTEGIRPWTKED 178
              +          +R   ++      +  +            +    K   I P+T+E+
Sbjct: 122 NGCTIIRIKNIHKIIRPFIRYLYANNIIIKDFSSSIILPKEDEKTKLAKENKIIPFTREE 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
            + F S   +G    + F   LYSGLR  +        +      I   KT   I     
Sbjct: 182 EKTFLSAI-KGQHLEMLFVTALYSGLRQGELFALTWNDINFEKAYIDVNKTYRYIADVTR 240

Query: 234 ------------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                          +       +LL +               K
Sbjct: 241 TGRTGGYSSIQTPKTPKSIRTVPIPQFLIKMLLQYRNDQRLLKIKYADVYEDHNLVFCNK 300

Query: 264 MNA----TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD- 317
           + A    +     +K   T   +     H +R   AT   + G     +    G  TV  
Sbjct: 301 LGAYLVDSTVGRQYKIILTNNNIPLRKFHDMRHTFATRLFELGEEPKTVQELLGHSTVSI 360

Query: 318 QAETYTKGADRIRLGIKNSRRISSV 342
              TYT   + ++   +   ++  +
Sbjct: 361 TLNTYTHVLESVK--QQAISKLDEL 383


>gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
 gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus
           megaterium QM B1551]
          Length = 283

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 88/268 (32%), Gaps = 19/268 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRKH 128
           LI ++ +       + N+  ++ +  +Q             ++T  ++++ +   ES   
Sbjct: 11  LIDDFSQWLIESGKSDNTIKTYRAVLNQFHEWLLSEGRHLDQVTKNNVQTYMINLESNNK 70

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+  +   ++ V  ++  + E V        E+           ++ D    +     
Sbjct: 71  SASTIEKAFVTISVFARFLEKPEIVQNIERKRKEKNNEVVPQSLEASELDRLLSEVKQQG 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM-- 242
             +       LL++G+R S+ C    + ++ N       I+  K      V L       
Sbjct: 131 NLRDIAIVYTLLHTGVRVSEICALNHKDVEINKSDGFLIIRNAKGCKKRFVPLSTEARNS 190

Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             K +       E  F++N  ++M+        K        N + H +R          
Sbjct: 191 LKKYIDSLDSNHEALFVSNFDRRMSPRTVQYMLKKY------NVNPHKLRHTFCHELVKK 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G     +    G   V+  + Y K + R
Sbjct: 245 GIDIATVAELAGHSDVNVTKRYLKSSTR 272


>gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 349

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 79/277 (28%), Gaps = 9/277 (3%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPS 131
           L+ E+        L+  +               G        +      +   S   +  
Sbjct: 69  LVQEWELFMLARRLSQRTITERIRVIKSFASSIGIEPSQASALDVARWLAQQSSLGQS-- 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S   +   ++  FKW    E+   +P + V   +      RP +  D+ +     +   +
Sbjct: 127 SLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDRAPRPVSDRDLARLLETVNR-KR 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
            RL       +GLR  +  +   + + + +F     K      V L      +    P  
Sbjct: 186 TRLMVLLYCLAGLRAFEIAKLRGEDIVDGVFVRVLGKGNKERLVPLHPILQAIAPTMPER 245

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                         ++    S        +AGV  + H +R +  T   D G     +  
Sbjct: 246 GWWFPRDSRWPGMHISGKSVSQTISLTMRRAGVRATPHQLRHWQGTTLLDEGVDIRVVQE 305

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
                ++     YT+         +   R++    ++
Sbjct: 306 IMRHASISTTAQYTQVPTHKT--SEAVSRLNPFRGAE 340


>gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii]
          Length = 418

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 3/212 (1%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               + A  F   +GLR  D  +   + +       K   T             +     
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLRWKEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
                       +   N +  S   +A   KAG+  + S H  R   AT+    G   + 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYT 378

Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337
           +    G   V   + Y K  D  +       +
Sbjct: 379 VSKMLGHTNVKTTQVYAKVVDEKKNKAANAIQ 410


>gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269]
 gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269]
          Length = 418

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 87/308 (28%), Gaps = 16/308 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
             Y +A   S  +        +          +        + +++ + ++E     +  
Sbjct: 104 REYDNASLYSDTETAQAEQKERLQQNFIKYFDK-VADKRHRNSSLSIQTNWERVHVLLKM 162

Query: 105 KSGDFDY-RKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEY 152
            +GD     +I  +            P           ++A  + +  +   K A    Y
Sbjct: 163 FAGDTLLFSQIDNRLAEDFKYFLLSAPCGGGKKGTISRNTASTYFSIFKAALKQAFIDGY 222

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           + I+    ++  + +       T +++ +  +   E    + A  F   +GLR  D  + 
Sbjct: 223 LTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCERDVLKRAALFSALTGLRHCDIQKL 282

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +       K   T             +                 +   N +  S  
Sbjct: 283 KWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKLCGEPRQPEQLVFEGLPNPSWISRP 342

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +A   KAG+  + S H  R   AT+    G   + +    G   V   + Y K  D  +
Sbjct: 343 LRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 402

Query: 331 -LGIKNSR 337
                  +
Sbjct: 403 NKAANAIQ 410


>gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 372

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 84/313 (26%), Gaps = 47/313 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
               T    I  +        L  +S    E   +  ++    D    K+ +  I+  + 
Sbjct: 52  APDVTFGEYIRRWLYEVKANELKPSSLDRKEQTINYQVLPYLKDIPLTKLKSDDIQHMIN 111

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177
               K++ S+  +   ++    ++A+ +  V+ N   +V  PK   + +   +       
Sbjct: 112 DLKLKYSYSTVKKAYEAVNSCLRYALSKREVSENAADNVSLPKSMKKAVNDISFFSDEEL 171

Query: 178 --DMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               ++    +  G +     E +++   +GLR  +        +  N    +  +    
Sbjct: 172 GLIYKEAFKCYRNGKRIYRLAEIIVFLVNTGLRIGECLALKWSDIDWNTNIFRVSRNIVY 231

Query: 233 ITVELPDGFMKL--------------------------------LAMTPIGKETFFINND 260
           +        +                                  +          F  ++
Sbjct: 232 VKRRDTKSMLAETGYSSLEQRSTKTKNGDRVVPLNSAAIRALLSIRGINKNNSYIFSTSN 291

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        F+A   +  +     H +R   A+     G     +    G   V   
Sbjct: 292 GGRVYPRNIDRMFRAILNRCHIKGRGVHSLRHTFASRMFAEGVDVKTVSEVLGHSDVSIT 351

Query: 320 -ETYTKGADRIRL 331
             TY       R+
Sbjct: 352 YNTYIHLLKEQRI 364


>gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
 gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 302

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 90/285 (31%), Gaps = 24/285 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L     +       +  ++ ++     +     G       T + +R     ++ +    
Sbjct: 13  LRQRLIEDMTLRRFSRETQRNYIRDVGRFAAFLGRSP-DTATAEDVRQFQLEQRESGVPV 71

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    ++++R  F   + +  +       + R     +     ++E++ +  +  +   
Sbjct: 72  PTMNSIVSALRFFFTHTIDRPDL----ARKLMRISHPRQLPMVLSREEVARLLNATTC-L 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------------LP 238
           + + A      +GLR ++     V+ + +    I+ ++     +                
Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGRSRNAMLSPDLLTLLRQW 186

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             F +   +       F   +  + ++  Q        A  A + K    H +R   AT 
Sbjct: 187 WAFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAEIAKRVGPHTLRHSFATH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340
             + G     +    G   ++    YTK A R +R  +    R++
Sbjct: 247 LLEDGVDIRVIQVLLGHSKLENTALYTKVATRTVRTVVSPLDRLA 291


>gi|52079966|ref|YP_078757.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785338|ref|YP_091167.1| hypothetical protein BLi01574 [Bacillus licheniformis ATCC 14580]
 gi|52003177|gb|AAU23119.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52347840|gb|AAU40474.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 381

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 99/362 (27%), Gaps = 47/362 (12%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+  + GK  + +  G     G RI+      S+   A            +  NS   
Sbjct: 3   VIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSHNP 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT----TKHIRS 121
             +       ++ +S     L  ++ +++    D  I+   G F  + IT      +I  
Sbjct: 63  NKSVFSTFAEKWFESKKVR-LRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYINR 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDM 179
               RK  P++       +  + K A R+    +     V  P              +  
Sbjct: 122 LHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDDVNLPPENRISKVWNESNVQAF 181

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233
              ++     ++  +     + +G+R  +        +      +  ++T   I      
Sbjct: 182 LDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGNY 241

Query: 234 ---------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                        ++     ++L    I  +        + ++ 
Sbjct: 242 GLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVHP 301

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +   F     +  + K     +R   AT     G +   +    G   +     TY+ 
Sbjct: 302 NNYRRAFTRLIAQLELPKIPPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYSH 361

Query: 325 GA 326
             
Sbjct: 362 VL 363


>gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS]
 gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS]
 gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC
 gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC
 gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS]
 gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS]
          Length = 300

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 39/304 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSG---VES 125
               +Y         + ++R ++      +     +     D   +T   +R+      +
Sbjct: 6   DAFDQYLALE--RGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQAA 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  +  ++++    WAVR+  +A +P   ++ PK +        ++  +     
Sbjct: 64  AGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDA 123

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
            + G         + RL  E L  +G+R S+ C   +  +  +   ++   K     TV 
Sbjct: 124 ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNK 284
             +   + L              +                    ++  +     AG  + 
Sbjct: 184 FGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             HG+R  +AT   + GA    +    G  T+   + YT              R+ +V D
Sbjct: 244 GPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVT---------VARLRAVHD 294

Query: 345 SDDP 348
              P
Sbjct: 295 QAHP 298


>gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 30/267 (11%)

Query: 88  AVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142
           +VN+  S++S  +  Q+     D    K ++ ++ + +     RK   SS  + ++++R 
Sbjct: 29  SVNTLTSYKSDLEEVQLFLDDDDLLLSKASSDNLIAYLNHLSQRKLKASSQRRKISAIRQ 88

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----------WSEGSQ 191
            + +   +     NP  +++ PK+     +   K  +                   +  +
Sbjct: 89  FYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQAKIESEDPSPGQWKRIR 148

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             L  E L  +G+R S+        L       I   K      V      +  L M   
Sbjct: 149 MFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRERFVIFSPSSLCALQMYKK 208

Query: 251 GKETFFINNDKQKM----------NATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
              T  +  +   +          +   F+   K  A++A +   N S H +R   A+  
Sbjct: 209 MCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQTKNISPHIIRHAFASHL 268

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + GA    +    G   +   + YT 
Sbjct: 269 LEGGADLRTIQILLGHIDISTTQIYTH 295


>gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82]
          Length = 312

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 6   RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMR 63

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+ +       ++     D    K+ T     +R     +   PS+  + + ++  +
Sbjct: 64  SGHNTHLK----LLRLSEAMDDPCVHKLNTTMLTELRVYRIEQGIQPSTINREIGALSAM 119

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 120 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 179

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 180 GARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 238

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 239 ------VRDVIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 292

Query: 323 TKGA 326
              A
Sbjct: 293 AHLA 296


>gi|283768118|ref|ZP_06341033.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283461997|gb|EFC09081.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 378

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 60/385 (15%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F          G  +R                + L     +  ++N
Sbjct: 2   IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118
           +     TT K +   + +     ++  ++   ++          +    D   +KIT  +
Sbjct: 62  NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174
            +  +       S           +FK+AV  + +  NP    + P++K        + +
Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           + ++++QF +F  +       F  L ++G R  +        +     +I   KT     
Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGA 234

Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +        ++ L       +         + N
Sbjct: 235 NYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294

Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +               S      HG R    ++  +AG +  E+    G   +    
Sbjct: 295 KQLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354

Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344
             Y    ++ R   + + + +  ++
Sbjct: 355 DIYAHATEKQR--DQVADKFAKYIN 377


>gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 461

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       AV++  ++ S +   +R        +I  + IR  +E      +SA +   +
Sbjct: 73  RELRIRFYAVSTIKNYRSAWVCFLRWY-RGPLDQIDQEDIREYLELLVAGGASASEVSVT 131

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  L     +   +     + +  P++  +     +K+++Q+         + +L    L
Sbjct: 132 LSALRTGLDKFCLL--RCTVGLVSPRKSKQLPVVMSKKEVQRMMEAA-RTLRDKLLLTVL 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGK----- 252
             +GLR ++  R        +   I+ Q  K      V L D  + L+            
Sbjct: 189 YATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRHTKGVGY 248

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     + ++        K     +G+ K  + H  R   AT   ++G     +  
Sbjct: 249 LFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQK 308

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G   ++    YTK A      +
Sbjct: 309 LLGHTNLETTSLYTKVARMKATAV 332


>gi|306817826|ref|ZP_07451565.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
 gi|304649305|gb|EFM46591.1| phage integrase family protein [Mobiluncus mulieris ATCC 35239]
          Length = 368

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63
            +T+ R + G+++Y  R   G+               +   +                N 
Sbjct: 3   GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121
                 TL  +   Y + A   +    +   + +     I  K       R +T + I +
Sbjct: 63  DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121

Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171
            V   +  P          +  + +  +  LF + +    +  NP   +  P        
Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T + +++            +   FL  +GLR  ++       +     +I   K   
Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238

Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270
                               TV +    + LL    +    F  +   +         F 
Sbjct: 239 QGEKSSDFYLGSPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298

Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              +K            H +R    +    AG     +    G K +      Y     +
Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINVYGHITPK 358

Query: 329 -IRLGIK 334
             R    
Sbjct: 359 DARAAAD 365


>gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627]
 gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627]
 gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 330

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++ + G+     R     G+RIR       +    +   +  +   + +   P  +   L
Sbjct: 4   KQLKDGRYQVDVRPQGAEGKRIR-KIFALKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             L+  +               S+     +++R+ GD    ++T K +      +     
Sbjct: 62  SELLDAWW---MLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGL 118

Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PSS  + L  +  +F   +  + +   NP   + + K +   +   + +++++      
Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLER-- 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R S++     +H+  N  +    K G   +V + D  + L+  
Sbjct: 177 LEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G                 F    +         ++ H +R   AT     G     L
Sbjct: 237 RRTGLLYQVDYLK--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288

Query: 308 MATYGWKTVDQAETYTK 324
               G  T+ Q  TY  
Sbjct: 289 QRILGHATIQQTMTYAH 305


>gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
 gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6]
          Length = 328

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 90/291 (30%), Gaps = 41/291 (14%)

Query: 90  NSRISFESYFDQIIRKSGDFD--YRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144
           N+ +++              +  +       I +     ++   + ++  + L++++ ++
Sbjct: 27  NTLLAYGRDLKDAASWLFHRESGFATAQRADIEAYLIACDAEGLSRATRARRLSALKQIY 86

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFE 197
           ++A  + + + NP + +  P R  +  +     ++ +             +  +     E
Sbjct: 87  RFAFEEGWRSDNPAIQISGPGRDKKLPKTLEVIEVDRLLDAARQTGRSPEDRLRNCCLME 146

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            L  +G+R S+     V   + +   +    K G    V L       LA     ++   
Sbjct: 147 LLYATGMRVSELVSLPVSSARGDPQMLLVLGKGGKERLVPLSPPARDALAAWLSVRDKAD 206

Query: 257 INNDKQKM----------------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
             N  +                      F +  K  A   GV+    + H +R   AT  
Sbjct: 207 EANRSKGHASSRFLFPSRGKAGHLTRHFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHL 266

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              GA    +    G   +   E YT   +          R+  +V    P
Sbjct: 267 LANGADLRAIQTLLGHADIATTEIYTHVLE---------ARLQELVMDHHP 308


>gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 397

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 118/396 (29%), Gaps = 62/396 (15%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL----PYPHESTFIPAYMSALTGSTPKRE 59
            L+ P  +  ++  +G    Y     G  IR         +  F+  Y+        K  
Sbjct: 9   KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYL-----IPEKTR 63

Query: 60  YINSPRKKPTTLKWLIS-------------------------EYR---KSAHWGSLAVNS 91
              +  +    L   I                          +Y    +S      ++N 
Sbjct: 64  EDKAKNEATLALAKAIQSKKIVELQNDAHGFQNTNKSKANVIDYLMGIRSQSKERGSLNY 123

Query: 92  RISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAI 134
             +  +   ++    GD   +R I    + S V+  K                 + +S I
Sbjct: 124 EKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKTGGVLSNNSVI 183

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQ 191
            +   +R     A ++  + +NP    +   +           T ++++       +   
Sbjct: 184 AYYGVLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIDELKLLIGTECKYEI 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250
            + AF F    GLR SD  +     LQ +   I+   K              + L   P 
Sbjct: 244 MKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQ 303

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
             E    +      +    +   +  A  AGV  + S H  R   AT+    GA  + + 
Sbjct: 304 QNEAKGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADLYTVS 363

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              G K +   + Y K  D+ +   +    I ++ D
Sbjct: 364 KLLGHKNIATTQIYAKIVDKKK--EEAVSLIPNLTD 397


>gi|295107573|emb|CBL05116.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 364

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 108/369 (29%), Gaps = 42/369 (11%)

Query: 12  TKERTRHGKIIYY--FRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            ++  R G  +    +    G  I          T   A+         +    N  R  
Sbjct: 3   VRKDERRGTWLVKLHYTNHDGETIDSTKRGFKTKTDALAW--------ERDFLANEARST 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
             T +  +  Y +      L   +  S E    +++I   G      IT++ I     + 
Sbjct: 55  SMTFEQFVKVYAEDVRPR-LRETTWRSKEYMISEKLIPFFGKMRVVDITSRDIMDWQNTL 113

Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTK 176
                    K++ +        +  +   AV+   +  NP        +++   ++ WT 
Sbjct: 114 LKAKDKNGKKYSETYIRTVENQLSAILNHAVKHYGLPSNPLQKAGRVGEKQGNEMKFWTT 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224
           E+  +F     +  +   A+E L + GLR  +      + +     +I            
Sbjct: 174 EEYLKFSEQVVDRPEMFYAYEILYWCGLREGELLALTAKDIDTKNRTISVTKSYSRLNGR 233

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               K +   +   + LP    + L      +     N           +   K  A  A
Sbjct: 234 DIIGKPKTKKSERVIALPRFLAQELQEYMEMEREPNENERLFPFTKYALNNTLKTAAKLA 293

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
           GV     H +R    ++  + G TA  +    G ++V     Y     ++ R        
Sbjct: 294 GVKEIRVHDLRHSHVSLLINLGFTAVAIADRMGHESVHITYRYAHLFPNQQRNMADVLDA 353

Query: 339 ISSVVDSDD 347
           + +      
Sbjct: 354 LMNARGEGH 362


>gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
 gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345]
          Length = 304

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 88/281 (31%), Gaps = 22/281 (7%)

Query: 71  LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK 127
           ++WL     Y ++     ++  +  ++     ++ +   + D +  +  + +++ +    
Sbjct: 10  VRWLTDFERYLRTE--RQVSAYTVRNYLFELKRVEKLFSETDSWLSLQHESLQAMLAKLH 67

Query: 128 HTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQ 181
               S      ++   +  +++ +R++ + +NP +S+  PK+     +     +   +  
Sbjct: 68  RKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLPKNMDVDSVSHLLD 127

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                    + +   E    SGLR ++     V  +Q +        K      V +   
Sbjct: 128 LDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDIQFSQAQVKVLGKGSKERIVPIGKL 187

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRK 291
            +  +      K      +D   +                         G+    H +R 
Sbjct: 188 ALTAINQWLDIKRDIACEDDALFVTAKGKRLAHRSIQARLAKWGQEQAIGIKVHPHKLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++ A    +    G   +   + YT   D   L 
Sbjct: 248 SFATHMLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287


>gi|319938811|ref|ZP_08013175.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811861|gb|EFW08127.1| phage integrase family Site-specific recombinase [Streptococcus
           anginosus 1_2_62CV]
          Length = 385

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 103/385 (26%), Gaps = 52/385 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
                 ++ K R      IY    G  +               Y + +       +    
Sbjct: 9   KKSKSGYLYKVR------IYRVIDGKRQDFFKSGFKSLREARQYEAMIYHKKASGDLSGL 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRS 121
            R        +  E+ K+  + +    +            I+   G+    KIT  H + 
Sbjct: 63  LRASERRFDEVFEEWFKT--YQNTVERTTSVRTDDLFRIHILPVLGNMKISKITPWHCQD 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +  T  +  Q  +    +F +A++ + +  NP      PKR+ +    +   +   
Sbjct: 121 FITEKGQTFRNIKQVKSYTSQVFDFALKMKLITDNPMKQTILPKRERKKSDNFFSVEELH 180

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---------------- 222
                    E  +    F  L YSGLR  +        +  +                  
Sbjct: 181 EFLAIIKAEEPYKNYALFRLLAYSGLRKGELYSLRWSDIDFDNQLLSISKNLGRIKGKAV 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQK 263
              T+   +I  + L    + +L                               +   + 
Sbjct: 241 EKSTKNRFSIRQIPLDTETVSILKEWKQKSRREKGQLSVTPLIGSDYMFTFVDRDGKIEP 300

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           +     +   K    K G+ K + HG R   AT+  + G          G  +     +T
Sbjct: 301 LYQDYINSVLKRIIRKHGLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDT 360

Query: 322 YTKG--ADRIRLGIKNSRRISSVVD 344
           Y+    A   +   K    + S   
Sbjct: 361 YSHSTVAGEKKAITKFVDYLDSAKG 385


>gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89]
 gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89]
          Length = 330

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 21/317 (6%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++ + G+     R     G+RIR       +    +   +  +   + +   P  +   L
Sbjct: 4   KQLKDGRYQVDVRPQGAEGKRIR-KIFALKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             L+  +               S+     +++R+ GD    ++T K +      +     
Sbjct: 62  SELLDAWW---MLDGRNQAYGDSYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGL 118

Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PSS  + L  +  +F   +  + +   NP   + + K +   +   + +++++      
Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLER-- 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R S++     +H+  N  +    K G   +V + D  + L+  
Sbjct: 177 LEGDARRVAILCLSTGARWSEASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G                 F    +         ++ H +R   AT     G     L
Sbjct: 237 RRTGLLYQVDYLK--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288

Query: 308 MATYGWKTVDQAETYTK 324
               G  T+ Q  TY  
Sbjct: 289 QRILGHATIQQTMTYAH 305


>gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7]
 gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7]
 gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7]
 gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7]
 gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7]
 gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7]
 gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7]
 gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7]
          Length = 334

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 84/300 (28%), Gaps = 36/300 (12%)

Query: 74  LISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVE 124
            I  Y  S      +   N+  S+   F  +++               +I    +   + 
Sbjct: 8   YIQRYFMSYLMKQHNYGPNTVSSYRDTFKLLLKFMSESGKSISKKTVDEIDCDVVLKFLS 67

Query: 125 S----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK+   +    L  ++  F++ +         C  +       E  R        
Sbjct: 68  WLSNVRKNGVPTQNVRLAHIKSFFRYVMMISPEYSGQCSEILSIPFAKEDKRLPDCMSTD 127

Query: 181 QFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
             K          +EG +       +  S  R  +     V+  Q           K   
Sbjct: 128 AIKQMLSSIDSSSNEGLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGNK 187

Query: 232 IITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAG----- 281
             T+ L     K+++        + +   F N +  ++         +  +  A      
Sbjct: 188 YRTIPLLGKTEKIISKYIRQFGLMQESPMFCNRNGDRLTRQGIRYIIRKYSKLANDTVPG 247

Query: 282 -VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
            +  S   H +R   AT   D G   + +    G ++V   + Y +   + IR  I+   
Sbjct: 248 IITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKAIETVA 307


>gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1]
 gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN]
 gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN]
 gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1]
          Length = 375

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 111/369 (30%), Gaps = 42/369 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTP--KREYINSPRKK 67
           + +   ++G+  Y F+   GR I R+          ++  A             +  ++K
Sbjct: 9   IKEYTLKNGEKRYMFKIFLGRNINRIKKETTRRGFKSFAEAEEAYNHLNIENVNDFVKQK 68

Query: 68  PTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             T+  +   +          S A  + I++      I    G+    KI+ + ++   +
Sbjct: 69  QITINQMYEIWFARYRTTVKESTANKTAINYRV---HIKPFFGNAYMDKISVRDVQLWAD 125

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
                       +  +R  +++A+R  YV+INP  S+  P + +   R        + + 
Sbjct: 126 KLATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPVKTSRPRRNVEDNVYSRKEL 185

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------F 222
                       +    F+ L  +GLR S++       +                     
Sbjct: 186 ELFLQVAKEYNLRAYTYFKLLASTGLRKSEALALTWSDIDFINGVIDVNKTLAVGLDNKV 245

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKAKA 277
            ++  K+ + I        +  +       E                S      W +A  
Sbjct: 246 QVQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEAIY 305

Query: 278 TKAGVNK---SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTKGADR-IRL 331
            KA  +    + HG R   AT+   +       +    G   +    + YT   ++  + 
Sbjct: 306 NKAPKDLKHITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365

Query: 332 GIKNSRRIS 340
            +     + 
Sbjct: 366 AVNVLNELD 374


>gi|157149671|ref|YP_001449679.1| phage integrase family site specific recombinase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074465|gb|ABV09148.1| site-specific recombinase, phage integrase family [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|327460667|gb|EGF07002.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1]
          Length = 384

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61

Query: 64  PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+  +       + +  ++  +      I+   GD    +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFNAYVGTVEETTSSQTKNIYRI---HILPIFGDKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + L+                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDLIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +   S HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|66395818|ref|YP_240184.1| ORF011 [Staphylococcus phage EW]
 gi|62636240|gb|AAX91351.1| ORF011 [Staphylococcus phage EW]
          Length = 344

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 99/347 (28%), Gaps = 27/347 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             + G+   Y  + +G+R R              S L        Y N       TL   
Sbjct: 3   VRKRGETYQYDFRLNGKRYRKGGFKTKRLARMAESELMMDIEDGLYNNDS----ITLAQY 58

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS-- 131
              Y    +    + ++  +       +     G    + IT    ++ +          
Sbjct: 59  FKNYVGVYNESHHSKSTVANMIGRLKSVENHTLGHIPLKNITRLQYQTFINDYGKDHVQD 118

Query: 132 SAIQFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           S  +   +++      +F+  V++++       S +  K + E     ++    +     
Sbjct: 119 STRKMHRAIKNCVQDAIFEGIVKRDFTHNVTPKSNKNSKEEKEKYFEVSEYKKLKE-LTK 177

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPD 239
           ++ ++  +    ++ +G R S        ++     ++               I  +   
Sbjct: 178 TKSTRSYMVLFLMICTGARISGILNLKHSYIDKVNCTLYIDEKKTDTSPRYVQIGRDDMQ 237

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
             +  +  TPI    +      + ++    +            +K ++H +R    +   
Sbjct: 238 HLLNYIKSTPIDLSGYVFAEFGKVVSNAAVNKTLGKLCDALDTDKRTSHSLRHTHCSFLL 297

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA------DRIRLGIKNSRRI 339
             G + + +    G K +D    Y             +L +     +
Sbjct: 298 SQGISIYYISKRLGHKNIDTTLKYYSHLLEDQYETESKLAVNAINNL 344


>gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC
 gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 20/271 (7%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
            + +Y         ++  +  +++   D +++   + D    R+++   +R  +   K +
Sbjct: 4   YLQKYWNYLRNERQVSSYTLTNYQRQMDAVMKILQENDIQNWRQVSPSVVRFILAQSKKS 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L+++R    + V Q  + +NP + +  PK+     +    E + +     
Sbjct: 64  GLHEKSLALRLSALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQLNKLLDNN 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------TQKTGTIITV 235
                  + +   E +  SGLR S+     +  L      I+                  
Sbjct: 124 SKEPIDLRDKAMLELMYSSGLRLSELQGLNLTSLNFRSREIRVLGKGNKERILPFGRHAS 183

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                ++K+  +     +  F+++   +M+        +    + G+  + + H +R   
Sbjct: 184 HSVQEWLKVRLLFNPKDDALFVSSLGNRMSNRSIQKRMEIWGVRQGLNSHLNPHKLRHSF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT   +A +    +    G   +   + YT 
Sbjct: 244 ATQMLEASSDLRAVQELLGHSNLSTTQIYTH 274


>gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
 gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum
           DSM 3986]
          Length = 327

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 17/294 (5%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             +   +  +       E     +         +  +  +      +  S   +++  + 
Sbjct: 23  EKLQEVLQYVFADYELTEKQKQGKTSKQNF---VELFLSAKRIEGCSEKSLKYYKATIEA 79

Query: 102 IIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           ++ +    D + I T  IR       E +K +  +       +   F W   ++Y+  +P
Sbjct: 80  MLNEL-QKDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFAWLEDEDYILKSP 138

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + + K  T     ++ E ++  +   +E  +     + L  +G+R  +        +
Sbjct: 139 VRRIHKVKTGTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDI 197

Query: 218 QNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270
             N    I   K      V         L      +               +++      
Sbjct: 198 DFNERECIVFGKGSKERVVYFDARTKIHLQNYLNSRIDDNPALFVSLKEPHKRLKIGGIE 257

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  +    K G+     H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 258 VRLREYGKKLGLQKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
 gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256]
          Length = 303

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 87/269 (32%), Gaps = 19/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           +  Y K       + ++  ++        +++ K      + +  +   + ++       
Sbjct: 10  LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTKGSSETAQDLKRRDFVAALKRLSQQGL 69

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + L++ R    W V+   +  +P  +++  +      +   +E++         
Sbjct: 70  SERTLARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPA 129

Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243
                 +    FE +  SGLR S+     +  +  +  +   T K      + L    ++
Sbjct: 130 DDSLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQIPLSGKSVE 189

Query: 244 LLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSAT 295
            L      +         F   +  ++   Q     +A A +  +G + S H +R   A+
Sbjct: 190 ALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYAS 249

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
               +      +    G   +   + YTK
Sbjct: 250 HLLQSSRDIRAVQELLGHSNLSTTQIYTK 278


>gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J]
 gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J]
          Length = 381

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 122/382 (31%), Gaps = 52/382 (13%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINS 63
           + + + + G I+Y         +  G++ R      +         L            S
Sbjct: 3   IIEYKKKDGTIMYRSQVYLGVDRITGKKSRTSVSGRTKKELKNNIKLAKFEFQANGETLS 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
            + +  T K L   +  +     L   S  S  S     I+   G     KIT+  +++ 
Sbjct: 63  KKVQVKTFKDLTDMWLVNYKLT-LKPQSYNSTVSMLNKHILPYFGKMKLDKITSSDVQTF 121

Query: 123 VESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176
           + S      +       + +  + +  V  + +  NP   +  P+++ +           
Sbjct: 122 INSLSKK--TINYVNARSIISRILQHGVLLQLIQHNPARDIVLPRKQKKDSDKVKFIEKD 179

Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226
                 + ++++K    + +   + ++ LL +GLR  ++C      +             
Sbjct: 180 DLKKFLDYIEKYKLRNYKTNFNYVLYKLLLATGLRIGEACALEWSDIDLINGTINIDKTY 239

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQF 269
            K+   ++        +L+++         +   +Q+                      F
Sbjct: 240 SKSIRRLSTTKSKSGTRLISIDQATVNMLKLYQVRQRQLFHEVGGKAPKVVFATPTRKYF 299

Query: 270 SIWFK-----AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
             + +         +AG+ + + H  R   A++  +AG +  EL    G   +    + Y
Sbjct: 300 HTFVRQNALDRACIEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVY 359

Query: 323 TKGA-DRIRLGIKNSRRISSVV 343
           +  + D+ +  +    +  + +
Sbjct: 360 SHLSKDKEKEAVSYFEKAINSI 381


>gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby]
 gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 94/374 (25%), Gaps = 59/374 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT----GSTPKREYINSPRKKPTTLKW 73
            G + Y  +   G++I L      T   A   A+      +            KP TL+ 
Sbjct: 37  SGTMRYVCQYKRGKKINLGTVGVMTAAQAREKAIEVLSNANKGIEPTAQKGINKPKTLQE 96

Query: 74  LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
            I      +  S H       +       +             +IT   +      R   
Sbjct: 97  FIESDYKPWVLSTHKRGQE--TLAGLIRCYKAFF----SKPLGEITPALVEQWRVKRLNE 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------------------ 168
             + ++  + ++ ++ L   AV   ++  N    ++  K                     
Sbjct: 151 GTSQATLNRNISMLKSLMTKAVEWGFLKENALGKLKPYKIDRSPKIRYLSFAEEARLREA 210

Query: 169 --EGIRPWTKEDMQQFKSFWSEGSQ-----------PRLAFEFLL--YSGLRCSDSCRAG 213
             E                   G               L    LL   +GLR  +     
Sbjct: 211 LIERDNQLRLMRKNGNLWREKRGYDLLPELSEDNACDYLMPMVLLSINTGLRRGELFHLT 270

Query: 214 VQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--T 267
              +  +  S+       K      + L D   K+L       E         K N    
Sbjct: 271 WDMVNLSEGSLILSGEITKNKHSRYIPLNDEAYKILDNLHKKAERKEGLVFPSKNNQPFN 330

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                + +   KA +     H +R   A+    AG   + +    G   +     Y   A
Sbjct: 331 HVKRSWGSLLKKANITQFRWHDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLA 390

Query: 327 DRIRLGIKNSRRIS 340
              +  +   R+I 
Sbjct: 391 PEHK--VNAVRKID 402


>gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 78/290 (26%), Gaps = 31/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +  H    A  +   +     Q+   +G     ++  +H+R         R     S   
Sbjct: 61  EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             + ++  F    ++++  I         +  T      T E + +     +   +  + 
Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253
           F  +   GLR +++    V  +      +   +        V LP   ++LL        
Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234

Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295
                                     M+ T      K        G   S H +R   AT
Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
              +AG     +    G  ++     Y    D       +   R+   + 
Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344


>gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905]
          Length = 345

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 398

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 46/306 (15%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112
           I EY +        + N+  S+        R                           + 
Sbjct: 23  IVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG 82

Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
            IT + I            +  SS  + L S+   + + V Q   ++ +P  ++  PK+ 
Sbjct: 83  SITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQD 142

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +  T E            S    +        L  G+R ++     +  +      
Sbjct: 143 KVLPKYLTAEQSISLLESTQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQ 202

Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271
           I+   K      V L D  ++ L +    + T                 K++++  +   
Sbjct: 203 IRLFGKGHKERMVYLNDACVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQ 262

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328
                   AG+   S H +R  +AT+    G      L    G  +V   + YT   + +
Sbjct: 263 LISGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322

Query: 329 IRLGIK 334
           +R  I+
Sbjct: 323 VRSAIE 328


>gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 367

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 108/328 (32%), Gaps = 33/328 (10%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+++            A   A    T  R+ +         +   +  + K     S+  
Sbjct: 24  GKKVTKSKVFHGKKREAEQFAKIFETKLRKSLQPG--SQMLVSDYLDYWLKRIQP-SIEE 80

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAV 148
            +  ++  +  ++    GD +  ++    ++  +   K  + +S  +  T+ R   + AV
Sbjct: 81  RTFKTYSWHLKRLKETLGDIELGELKVLLVQERLNELKDISETSVRKITTTFRTALRQAV 140

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
             E +  +P + +  P+   +  +  + +++ +F +   E  +  L    L  +G+R  +
Sbjct: 141 VWELLEKDPTVGLRLPRNPKKEKKVLSSDELIKFLNAAKEY-KYYLVLRILAVTGMRLGE 199

Query: 209 SCRAGVQHLQNNIFSIK---------------TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 + L  +  ++K                +   +  TV +    ++LL      + 
Sbjct: 200 CLGLMWKDLNFDKGTMKILRSADSKTRKVLDKPKNDSSRRTVTIDKETVELLKTHRKKQA 259

Query: 254 TFF-----------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
                          + + + +         K    KA +     H +R  + +I  DAG
Sbjct: 260 KRKVTSIRIEDELVFHVNGRPITHKAIDRTIKTALKKAELPMIRIHDLRHTAGSILLDAG 319

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADR 328
            +   + +  G  T       Y+    R
Sbjct: 320 YSLPTVSSLLGHSTPATTAAIYSHAIRR 347


>gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 330

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 100/316 (31%), Gaps = 57/316 (18%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQII----------------------------- 103
           ++ +Y        +L+  +   +       I                             
Sbjct: 8   ILDDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININK 67

Query: 104 ----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPC 158
                   D + + +   +I           S+  + ++++R  +K+     E +  N  
Sbjct: 68  IFNKSFISDINIQDM-YSYISYLDNELNDNASTRSRKISALRSFYKYLHQEIEMIDNNIT 126

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRA 212
             +  PK +       T  + +      +E       ++        L +G+R S+    
Sbjct: 127 EKLRNPKIQKRQPVYLTLSETELLLETINEEKNEFLRNRDMAIVFTFLTTGMRLSELVSV 186

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQK 263
            +  ++++ F+I  +      T+ L    + L+    + ++ +         FI+  K++
Sbjct: 187 DLNDIKDDHFTIIGKGN-KERTIYLTKNCIDLIDNYIMIRKNYLKDIKINALFISTRKKR 245

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319
           ++             KAG +    S H +R  +AT+    G      L    G ++V   
Sbjct: 246 ISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTT 305

Query: 320 ETYTKGADR-IRLGIK 334
           + YT   +  ++  + 
Sbjct: 306 QIYTHLDNEDLKRAVN 321


>gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii
           M21/2]
          Length = 402

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 91/306 (29%), Gaps = 46/306 (15%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112
           I EY +        + N+  S+        R                           + 
Sbjct: 23  IVEYVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG 82

Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
            IT + I            +  SS  + L S+   + + V Q   ++ +P  ++  PK+ 
Sbjct: 83  SITKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQD 142

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +  T E            S    +        L  G+R ++     +  +      
Sbjct: 143 KVLPKYLTAEQSISLLESTQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQ 202

Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271
           I+   K      V L +  ++ L +    + T                 K++++  +   
Sbjct: 203 IRLFGKGHKERMVYLNNACVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQ 262

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328
                   AG+   S H +R  +AT+    G      L    G  +V   + YT   + +
Sbjct: 263 LISGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQ 322

Query: 329 IRLGIK 334
           +R  I+
Sbjct: 323 VRSAIE 328


>gi|328463791|gb|EGF35344.1| integrase [Lactobacillus helveticus MTCC 5463]
          Length = 384

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 116/368 (31%), Gaps = 49/368 (13%)

Query: 11  VTKERTRHGKIIY----YF--RKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63
           + +  T  GK  Y    Y    +  G  I++      +   A  + L       +     
Sbjct: 5   IKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKVIKGEYIP 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
             K   T   L   + K     ++  ++  +   YF+  I+++ G     K+T    +  
Sbjct: 65  ESKGHITFNKLYRMWLKIYR-ETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKA 123

Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           V       P +  +F+     +  + +    +     ++   P +     +P+T    + 
Sbjct: 124 VNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNKPKPFTDFYSKD 183

Query: 182 FKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNI--------------- 221
             + +   ++      F+      YSG+R  ++       +                   
Sbjct: 184 ELNIFLRDAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNN 243

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269
             +    +   +  T+++    M+ L    + ++   +      +N+             
Sbjct: 244 ELYEDTPKTENSFRTLDMDAATMEYLKEWRLMQQKTMLKLGYNFLNSDNLLFSTINNGYL 303

Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                  W  A   K  + +   HG R   A++  +AGA+ +E+ A  G   ++     Y
Sbjct: 304 SMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIY 363

Query: 323 TKGADRIR 330
           T   D  +
Sbjct: 364 THVTDDQK 371


>gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 357

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 55/317 (17%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118
             ++EY        + +  + +++ +     +R                +     +  K+
Sbjct: 16  ACLTEYLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKY 75

Query: 119 IRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165
           I++                R +   +  +   S+R  +K+    + + A +P L++E P 
Sbjct: 76  IKAVTLTDAMEFLSFTVSERSNQAKARSRKAVSLRQFYKFLTNNKAWFAASPMLNLELPS 135

Query: 166 RKTEGIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            K    +  T ++  Q               +        L  G+R S+     V     
Sbjct: 136 PKNALPKHLTLQECGQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDFVE 195

Query: 220 NIFSIKTQKTG----------TIITVELPDGFMKLLAMT--------PIGKETFFINNDK 261
           NI   +                   V L +  +  +              ++  FI+   
Sbjct: 196 NIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEARKSVADPKEKALFISKRG 255

Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   +       +    G+     S H +R  +AT+    G     L    G + ++ 
Sbjct: 256 NRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNT 315

Query: 319 AETYTKGAD-RIRLGIK 334
            + YT   + ++R  I 
Sbjct: 316 TQIYTHVVNTQLRDAIN 332


>gi|187929673|ref|YP_001900160.1| integrase family protein [Ralstonia pickettii 12J]
 gi|221067672|ref|ZP_03543777.1| integrase family protein [Comamonas testosteroni KF-1]
 gi|187726563|gb|ACD27728.1| integrase family protein [Ralstonia pickettii 12J]
 gi|220712695|gb|EED68063.1| integrase family protein [Comamonas testosteroni KF-1]
          Length = 399

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           L P    + T  G+      Y    G  R+  L    E T   A   A       R   +
Sbjct: 27  LVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86

Query: 63  SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
               K       T+K L +++ +         +++  +++  D+ I+   G    + +  
Sbjct: 87  PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++   H P+ A +  + MR +F  A    +           P            
Sbjct: 147 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLIS 206

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         E  +          LA         R S+        +  +   +    
Sbjct: 207 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282
           + T    +        L                 ++  + +   ++   +      AG  
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340
           +   HG+R  SAT  A++G      MA    KTV     Y    D    +     + R  
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 386

Query: 341 SVVDSDDP 348
           ++ ++  P
Sbjct: 387 TITEAQRP 394


>gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 322

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
             +  +  +      +  +   +    + +  K  +   R+ITT+ IR+ +       + 
Sbjct: 46  DFLQMFLDAKRIEGCSERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRC 104

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +      ++   F W   ++Y+  +P   + + K KT      T E +++       
Sbjct: 105 SNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEK-LRDNCA 163

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +     ++ +       I   K      V         L  
Sbjct: 164 EIRDLAIIDLLYSTGIRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKE 223

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               ++          +    ++  +   I  +    +  +++   H  R+  AT + D 
Sbjct: 224 YIEKRKDNSEALFVTLDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDK 283

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 284 GMPIEQVQKILGHSQIDTTMQYA 306


>gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 88/334 (26%), Gaps = 38/334 (11%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +T  G+ +   R     G+RIR           AY   +T    ++ ++   +     L
Sbjct: 4   RKTGSGEWLCDLRPTGVKGKRIR-RKFATKGEALAYEKYITSEMEEKPWLGEKQDNRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--- 125
             LI  +        L   +    +        I    G+    +IT        E    
Sbjct: 62  SELIELW------HDLYGRTLADSDRMMSKLKGICAGMGNPIAAQITAADFSKYREGRLK 115

Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                         P +      ++  +F    +  + ++   LS     +  E +  + 
Sbjct: 116 GEIPDVNGRCMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLSGIPTFKVDEKMVSFL 175

Query: 176 KEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +  +    +   S      +  +  L +G R S++       +     + K  K+  +
Sbjct: 176 YPEEIKTLLQYLSESNSPSVLIIAKICLATGARWSEAENLEGSQVTPYRITYKNTKSRKV 235

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            ++ +       +        T              F         +    +  H +R  
Sbjct: 236 RSIPISKELYNEMPKKRGQLFTPC---------RKTFERTVAKAGIELPEGQCTHVLRHT 286

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G   +     Y   A
Sbjct: 287 FASHFMMNGGNILVLKEILGHSDIKMTMIYAHFA 320


>gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1]
 gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 322

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 85/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRK 127
           +  +  +  +      +  +   ++   + ++ ++ + + RKIT      ++    +   
Sbjct: 45  EEFLEMFLDAKRVEGCSERTIQYYKVTAEHMLSQT-EKEIRKITTDEMRSYLADYQKRNN 103

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +      ++   F W   ++Y+  +P   + + K KT      T E ++Q +   +
Sbjct: 104 CSNVTIDNIRRNISSFFTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRDHCT 163

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +     +  +                  V         L 
Sbjct: 164 Q-IRDLAMIDLLYSTGIRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKVHLM 222

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++          +    ++  +   I  +    + G+ +   H  R+  AT + D
Sbjct: 223 EYIESRKDKNPALFVTLDAPYDRLKISGVEIRLRQLGRELGLERIHPHKFRRTMATRAID 282

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 283 KGMPIEQVQKILGHSQIDTTMQYA 306


>gi|254498340|ref|ZP_05111078.1| prophage dlp12 integrase [Legionella drancourtii LLAP12]
 gi|254352434|gb|EET11231.1| prophage dlp12 integrase [Legionella drancourtii LLAP12]
          Length = 331

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 102/333 (30%), Gaps = 18/333 (5%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +   I +      G+R+R     E      Y  A        E          T    + 
Sbjct: 5   KRDGIWWVDIFHQGKRVRKSTGTEVKQDAEYFHAQLKHELWTEKQIKSIPNK-TWMDAVR 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133
            + + +        S  + + +   + +         I    I S  + ++ +   P++ 
Sbjct: 64  RWLEESAHK----RSLETDKIHLAWLDQHFRTKKLTDIDRDLIESIAKKKEQSNVSPTTV 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + L  +R +   A ++    +     +   K +   IR  T+ +  Q        S  +
Sbjct: 120 NRVLELVRAILNRAQKEWG-WLETLPVIRMRKVENRRIRWLTQNEASQLLK--ELPSHLK 176

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
               F L +GLR S+  +     +                   I V L    + +L    
Sbjct: 177 DMASFTLVTGLRESNVTQLKWSEIHLEKKHALIHADESKSKRPIPVPLSQQAIAILKDQI 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
               T+      Q +     +  ++    +AG+ +   H +R   A+     G   HEL 
Sbjct: 237 GKNPTYVFTYQGQPVTRCN-NHAWRKALERAGISDFRWHDLRHTWASWHVQNGTPLHELQ 295

Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              GW T +    Y    ++ +R   +    +S
Sbjct: 296 QLGGWSTYEMVLRYAHLSSEHLRTAAERIHDVS 328


>gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
 gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM
           15053]
          Length = 384

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 106/351 (30%), Gaps = 38/351 (10%)

Query: 21  IIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
               F       RIR                      +            +   L S Y 
Sbjct: 32  WYCKFYYKDSLGRIRQKKKGGFRLQRD-----AREWERSFINQHEGSLDMSFSDLYSAYF 86

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSA 133
           +S     L  ++ ++ ++    +I+   G+    +I    IR            +    +
Sbjct: 87  ESMKHR-LRDSTLLTKDNLIKTKILPYFGNIPINQIDPGAIREWQNIMCGQQMNNGKHYS 145

Query: 134 IQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
             +L +    +  +F +AVR   +  NPCL+     +K  G +  W  E+   F  ++SE
Sbjct: 146 STYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEEFHIFLEYFSE 205

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----- 243
             +  L F  L Y+G+R  +              ++  +K+   I         K     
Sbjct: 206 NMEMYLIFSLLYYTGVRIGEMLAFSYDDFNLQKGTVTVRKSYRRIRKTDYITPPKTPKSF 265

Query: 244 ------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                       L     + + +         ++    S +         V K   H +R
Sbjct: 266 RVIALPAFLIEQLQKYFSLKEGSGMDERIFSGISRYHISKFMNEACENTKVKKIRIHDLR 325

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339
              A++  + G +   +    G + V+     Y+     R +   ++  R+
Sbjct: 326 HSHASLLIELGVSPVLIAERLGHENVETTLNIYSHLYPHRQKELAESLDRL 376


>gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
 gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 104/361 (28%), Gaps = 46/361 (12%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G  +  F    GRR    +      +      +  +T   E+ +        +      
Sbjct: 19  NGLYVARFTDRFGRRKSKRF----KKLQECRQWIADATYIDEHSDLENATDMLVDAWFEY 74

Query: 78  YRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           +       ++  N+  ++ E Y   I     +    ++   H +          +  ++ 
Sbjct: 75  WID-LKKKTVRPNTVRNYSERYERNIKNVIENKLLTEVKPIHCQKIFSDMADEGYKTTTI 133

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            Q   ++  + ++A   E +  NPC   V+    K    +     D Q+     ++G   
Sbjct: 134 YQTRIALYNMLEFAKENEVIITNPCKKSVKSDIGKPSDKKEALTIDDQRRFLAAAKGQSY 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------ 240
              + F L +GLR  +      + +     ++  +++                       
Sbjct: 194 EYQYRFALQTGLRTGELVGLKWEDINFERKTLTIERSMEFRYKVGEWRVGPPKSKSGYRT 253

Query: 241 -----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                              K+  +     +T F+    Q +  + +         KAG+ 
Sbjct: 254 IPLTDEAICILKAQKEKNRKIKVIDKEWADTVFLCRKGQPVKNSTYDTALFKICDKAGIK 313

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR-----LGIKNS 336
           + S H +R   AT   + G     L    G   +      Y    +  +     L  +  
Sbjct: 314 RFSMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEIDLVAEAL 373

Query: 337 R 337
           +
Sbjct: 374 K 374


>gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031]
 gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031]
          Length = 337

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 89/330 (26%), Gaps = 28/330 (8%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRKKPTT 70
            ++ T++GK +      +G+R R  +  +   +  Y  A  G+ +               
Sbjct: 3   VRKDTKNGKWLAEV-YVNGKRSRKWFLTKGDALRFYNQAKEGAQSAVDSVTVLASDDLPV 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L + + E+    H  +L+     +  +    +    GD    +   +      + R    
Sbjct: 62  LSFYVQEWFD-VHGKTLSD--CEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGE 118

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      ++  +    +R +F              L   R  ++ E    +  E  
Sbjct: 119 FSVNKNKPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERD 178

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                   + S+     L     L +G R S++       +     +    K+    TV 
Sbjct: 179 IYRLLVECDNSRNADLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +      +L                       F         +    +  H +R   A+ 
Sbjct: 239 ISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFASH 289

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G  T++    Y   A
Sbjct: 290 FMMNGGNILVLKEILGHSTIEMTMRYAHFA 319


>gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 107/380 (28%), Gaps = 52/380 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G  +       G+R    +        AY          ++       + TT + 
Sbjct: 3   RRKSDGLYVASITLEDGKRKTFAF---KKKADAYAKLREVQQNMQQGTFVTSSQQTT-EQ 58

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +  + +     +L   S   +E      II + G    + +  +HI+     +     S
Sbjct: 59  FLMHWLEYTVKHTLRARSYERYEEIARLHIIPRLGKVKLQDLKPQHIQVLQAEKLEEGLS 118

Query: 133 AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A         +      AV+   +  N C +V   + K + ++P T +  ++  +   +G
Sbjct: 119 ASTVGIIHQVLHKSLDDAVKLGLLGKNVCKAVPPSREKRKDVKPLTPDQSRKLLNAV-KG 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--- 246
                 F   L +G+R  +        +      +  ++T + +  ++      +L    
Sbjct: 178 HPLEALFILALTTGMRRGELFALKWNDIDLEHGVLYVRRTLSRVPTKVRGENQDVLVEAE 237

Query: 247 -----------------------------------MTPIGKETFFINNDKQKMNATQFS- 270
                                                    +  F  +D   ++    S 
Sbjct: 238 TKTQRSRRSIVLTLLAVEALIEHRLKQDEQHHIAGDAWQDNDYVFCAHDGTYLSPNHVSS 297

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
              K     AG+     H +R  +AT+          +    G   +      Y+     
Sbjct: 298 YQLKQLLKAAGLPDIRFHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPS 357

Query: 329 IRLGIKNSRRISSVVDSDDP 348
             +     +++ S    DDP
Sbjct: 358 --MQADAMKQLHSAFKQDDP 375


>gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli M863]
          Length = 357

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +  R     
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLI 65

Query: 64  PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R       TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGADVITLHVWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 TMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|269977663|ref|ZP_06184630.1| integrase [Mobiluncus mulieris 28-1]
 gi|269934266|gb|EEZ90833.1| integrase [Mobiluncus mulieris 28-1]
          Length = 368

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 46/367 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINS 63
            +T+ R + G+++Y  R   G+               +   +                N 
Sbjct: 3   GITEIRHKDGRVVYRVRFRDGKTNASETFRNIETATYFRDLVKQFGGTAARNILDSRENP 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DFDYRKITTKHIRS 121
                 TL  +   Y + A   +    +   + +     I  K       R +T + I +
Sbjct: 63  DDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQTPIRALTRESIEN 121

Query: 122 GVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGI 171
            V   +  P          +  + +  +  LF + +    +  NP   +  P        
Sbjct: 122 YVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARGIRIPNDAIPTQP 181

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T + +++            +   FL  +GLR  ++       +     +I   K   
Sbjct: 182 VFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNVKTRTITVSKAWK 238

Query: 232 I------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFS 270
                               TV +    + LL    +    F  +   +         F 
Sbjct: 239 QGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKTRPDRPLRNKTFR 298

Query: 271 -IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              +K            H +R    +    AG     +    G K +      Y     +
Sbjct: 299 NCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQTTINVYGHITPK 358

Query: 329 -IRLGIK 334
             R    
Sbjct: 359 DARAAAD 365


>gi|227500720|ref|ZP_03930769.1| integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217178|gb|EEI82527.1| integrase [Anaerococcus tetradius ATCC 35098]
          Length = 380

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 110/368 (29%), Gaps = 45/368 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +LP F    R   G   ++    +    G ++        T   A          
Sbjct: 1   MQRRFKLPAF----RDESGNKTWFCKFNYTNWRGEKLTKKKRGFLTKKEAL------KWE 50

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           K            + +     Y++      +  N+  + E+  +Q I+   GD    +I 
Sbjct: 51  KEFLNQHSESIEMSFREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEIN 109

Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              I                K++P+        +  +   A R   +  N    V     
Sbjct: 110 NVTIIQWQNELMKIKDNNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGE 169

Query: 167 KT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           K  + +  WT+++ ++F     +  +   AFE L + GLR  +      +       ++K
Sbjct: 170 KEADEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFKKHTLK 229

Query: 226 TQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             ++                    T+ +P+     +             +     + +  
Sbjct: 230 IDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIDSFYKIKPKDLIFNFSKSYL 289

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--A 326
                  + K+ V +   H +R    ++  + G +A  +    G +++D    Y     +
Sbjct: 290 HHEMDRGSKKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPS 349

Query: 327 DRIRLGIK 334
            +  + + 
Sbjct: 350 KQKEMALS 357


>gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
 gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 108/375 (28%), Gaps = 45/375 (12%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49
           M       + P  + +++  +G +  Y   +R G   +  L                  +
Sbjct: 4   MAKKTTTQKEPVKLREKKLANGNVSLYLDIYRNGKRHKEYLKLYLIDAKTYVEKEQNRQT 63

Query: 50  ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYF 99
             T    K + +   +    +           +  YRK         +S+ ++    S  
Sbjct: 64  LATAQAIKSKRMIEIQNGEYSFTHQFKEDTPFLEYYRKMVEERRKNPDSQGNWGNWRSCL 123

Query: 100 DQIIRKS-GDFDYRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139
             +      +  +R IT   I    E          ++  P          S    ++  
Sbjct: 124 RYLEIYCDENTLFRDITPDFIIGFKEFLENVEKDTHKRTGPRRERDTFQGLSQNSKVSYF 183

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R     A  +  ++INP   +E  K         T E++++  S        + AF 
Sbjct: 184 NKLRACINKAYEERIISINPLRGIEGFKAAEVKREYLTLEEVKKLASTPCRYPVLKRAFL 243

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F   +GLR SD  +     +Q      +                           +    
Sbjct: 244 FSCLTGLRKSDIQKLTWSEIQKFGNFTRIVFNQKKTGGLEYLDITPQAEKYLGEHKNPKE 303

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                       S+  +  +  AG+ K  + H  R   A +  D GA  + +    G + 
Sbjct: 304 PVFSGFTYGAWTSLELQRWSMNAGIQKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRE 363

Query: 316 VDQAETYTKGADRIR 330
           +   + Y K  D+ +
Sbjct: 364 LSTTQIYAKVLDKNK 378


>gi|66046068|ref|YP_235909.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256775|gb|AAY37871.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 344

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 107/329 (32%), Gaps = 20/329 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K + R G + YY+  G   R  +P   +        + L     K    ++  ++  
Sbjct: 13  RLRKRKQRSGVVYYYYDIGGSPRKEIPLGSDYGMAIVEYAKL----EKSRTSSALVQQVL 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127
           T  ++  +Y         +  ++        Q+++   D       I  +H+   +  R 
Sbjct: 69  TFAYVAQKYMIEVVPTK-SPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQRG 127

Query: 128 HT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            T P  A +    +  ++ +   +              K   E  R    ED      + 
Sbjct: 128 KTAPVRANREKALLSAIWNF--ARSAGYTALANPCAGVKGHKEVGRDHYIEDEMFALVYG 185

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A +    +G R +D+ +   + +++    ++  KT     +E+      ++ 
Sbjct: 186 HAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVVID 245

Query: 247 MTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATI 296
                KE   I        ++ Q M ++     F A    AGV K       +R  + T 
Sbjct: 246 RIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAGTD 305

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            A++     +     G  TV   E Y + 
Sbjct: 306 KAESSGDILQARDQLGHTTVVMTENYIRK 334


>gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1]
 gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1]
          Length = 348

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 78/290 (26%), Gaps = 31/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +  H    A  +   +     Q+   +G     ++  +H+R         R     S   
Sbjct: 61  EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             + ++  F    ++++  I         +  T      T E + +     +   +  + 
Sbjct: 120 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHE-LIGSATTQRMFVY 174

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253
           F  +   GLR +++    V  +      +   +        V LP   ++LL        
Sbjct: 175 FWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHR 234

Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSAT 295
                                     M+ T      K        G   S H +R   AT
Sbjct: 235 HPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYAT 294

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
              +AG     +    G  ++     Y    D       +   R+   + 
Sbjct: 295 HLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 344


>gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 293

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 86/278 (30%), Gaps = 22/278 (7%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSG 122
             T   ++S++ +  + G  A ++  +++          I  +G       IT+  +R  
Sbjct: 2   KNTSGNILSDFLEDIYSGGTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREY 61

Query: 123 VESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            E         P++  + + +M    +WA  + Y++       +  K +    +   + +
Sbjct: 62  QEYMLSVQGLMPATINRRMAAMEKYIRWAHGKGYISRLLAF-PKIIKEQKTPPKALGRVE 120

Query: 179 MQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTII 233
             +         + R      L    GLR  +     +  L             K     
Sbjct: 121 QNRLLREAERHGKARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYR 180

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            V +P    K +              +  F N +   + A       K     AG++   
Sbjct: 181 KVPVPPEARKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNVEQVIKNIGKFAGLDLHP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R  +AT     GA    +    G   ++    YTK
Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTK 278


>gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 263

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 89/238 (37%), Gaps = 14/238 (5%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                +T       ++      SS ++ + S+R  +K+ +++  V+ +P L  E PK + 
Sbjct: 16  LSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIER 75

Query: 169 EGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              +  + E++ +  +  +   +G + +   E +  +G++ ++     +  +      IK
Sbjct: 76  TIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIK 135

Query: 226 TQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAK 276
            + +      + +    +K L      +    + N           +M    F    K  
Sbjct: 136 CRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFY 195

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A +A ++K   ++ +R   A      GA    +    G K +   + Y+  + + ++ 
Sbjct: 196 AKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIA 253


>gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS]
 gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC
 gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 39/304 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSG---VES 125
               +Y         + ++R ++      +     +     D   +T   +R+      +
Sbjct: 6   DAFDQYLALE--RGRSDHTRRAYLGDLRSLFAFVDERTPGADLGSLTLPVLRAWLSAQAA 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  +  ++++    WAVR+  +A +P   ++ PK +        ++  +     
Sbjct: 64  AGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDA 123

Query: 186 WSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
            + G         + RL  E L  +G+R S+ C   +  +  +   ++   K     TV 
Sbjct: 124 ANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVP 183

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAG-VNK 284
             +   + L              +                    ++  +     AG  + 
Sbjct: 184 FGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDI 243

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             HG+R  +AT   + GA    +    G  T+   + YT              R+ +V D
Sbjct: 244 GPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVT---------VARLRAVHD 294

Query: 345 SDDP 348
              P
Sbjct: 295 QAHP 298


>gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 298

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 83/268 (30%), Gaps = 16/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVE 124
            + ++  Y         A  S  S+       +   G            +     R  + 
Sbjct: 15  WESVLERYEDYLKTTR-ARLSVESYMGDLRLFLEWLGGRGEDNPTAVTPLDASEYRRFLA 73

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + + P++  + + S+R  + W      V  NP    +    +    R  T+ +      
Sbjct: 74  DKGYKPATINRKIQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMR 133

Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELP 238
                 + R       +L++GL+  +      + +          ++  K      V L 
Sbjct: 134 AVRAKGRLRDEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLN 193

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                +L        T  +   ++  +++  Q     +  A  A + + + H +R     
Sbjct: 194 ATARDILRRWLEENPTGPLWPSQKGGRLSKRQVQKIVEDCAYIAKLKDVTCHKLRHTFCK 253

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
              DAG +  ++ A  G   +D  + YT
Sbjct: 254 NLLDAGVSIDQVAAMAGHSRLDVTKRYT 281


>gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 327

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 18/295 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
                A   AL G+T   E  ++   +      L+  +  +      +  S   +    +
Sbjct: 23  KQLGNALEDALQGATVTYEGAHNEGNQ----ADLVEAFIIAKRIEGCSEKSLKYYRKTIE 78

Query: 101 QIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            ++   G    ++ITT+ +R    +    R  +  +       +   F W   ++++  +
Sbjct: 79  ALLAGIGKT-AQQITTEDLRTYLTNYQIQRGSSKVTIDNIRRILSSFFSWLEDEDFILKS 137

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   + + K        +T E ++  +   +  ++     + L  SG+R  +        
Sbjct: 138 PVRRIHKVKTAKVVKDTYTDEALELMRDNCT-NARDLAIIDLLASSGMRVGEMVMLNRDD 196

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QF 269
           +  N               V         L      +                       
Sbjct: 197 IDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDANPALFVSLKAPNERLMIGGV 256

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +    +  +     H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 257 ETRLREMGKRLNLQKVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|239947404|ref|ZP_04699157.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921680|gb|EER21704.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 386

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 101/333 (30%), Gaps = 19/333 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82
               RI++      + I A + A        +        +   K  T K     Y    
Sbjct: 59  KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141
              +        + +  D+  +   +     I    I+        T    A +FL  +R
Sbjct: 119 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEILR 176

Query: 142 VLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            +F  A+  E + +NP + + +  ++  +      +           +    +  F   L
Sbjct: 177 PVFNKAIEWELIKVNPAIGITKHQEQSRDRYLTREEIPQFFAAIAEEKNEVMKDFFLIAL 236

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           Y+ +R  +      + +        +   K G   ++ L D  +++L        + ++ 
Sbjct: 237 YTSVRKDNLLTMKWEQVSFTDKQLYLPETKNGKPHSLPLLDQALEILKARKENSTSSWVF 296

Query: 259 NDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +   +    +    +     KAG+     H +R+   +  A  GA  + +        
Sbjct: 297 PSETSGSGHLQEPKKAWSRICEKAGIKNLRIHDLRRTVPSWMAMTGANQYVIGQLLNHMD 356

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
                 YT+ A+           +   +DS  P
Sbjct: 357 PRSTAVYTRLAN-----DTAREYMQRAIDSMIP 384


>gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 454

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 97/332 (29%), Gaps = 24/332 (7%)

Query: 9   PFVTKERTRHGKIIYYFR-----KGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             V K  T+       FR      G G  RR R         +P+  SA+          
Sbjct: 88  GHVYKRGTKLKVWYGRFREDLLTPGGGIVRRTRNIRLGTIAELPSRASAVIRLQENIASH 147

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                   T+  L   + ++A   ++  N+   ++      I+   G  +   IT + ++
Sbjct: 148 KPKTA--MTVSELHRRW-ENAELPTIKRNTAGYYQKILRCHILPTFGQREIGSITREDVQ 204

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + S+  K++ ++      S+  +  WAV   ++  NPC  V  P  +   I+      
Sbjct: 205 TFLASQAGKYSRNTLRGMRVSLGRILTWAVNCAWLEKNPCSKVPLPHVEKGEIQRSILMT 264

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------TI 232
            Q            R     L  +GLR  ++          +I  +              
Sbjct: 265 EQVTAIADKLEEPYRTLVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKT 324

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVNKS-AH 287
            +          L                +  +          + +  A   G+  +  H
Sbjct: 325 ASSNRKLPIPAALISRMRMLGDGEFIFHSRAGSPVNPGNALKRYLRPAAKALGIRLTGWH 384

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319
             R   AT    +G++   +    G   V   
Sbjct: 385 DFRHTQATQLLRSGSSPKVVSGILGHSDVGIT 416


>gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973]
 gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 96/362 (26%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MIGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRNINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEYYPLYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT + +   VE  +       A       + + ++A+  E +  +PC  V     +  
Sbjct: 167 DLITKEMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVGEQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L             +              K    +AG+N
Sbjct: 287 EQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLPTYESCCKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21]
 gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21]
          Length = 334

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 16/320 (5%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72
            R GK ++Y  F     R  R            + +           ++   R     L 
Sbjct: 5   KRGGKGVFYMNFTVDGVRVSRSTGKFTKKEAKLFEAVEKKRMMVDGALSPRERAARMLLS 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129
             I +      W       +   +   ++++   GD    KI  + I+     +E     
Sbjct: 65  VAIQKVYDE-RWKDNKDGDKS--QRIAERVMYLIGDVPISKIDEETIKLLVRLLEGSGVK 121

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  ++L +++ L ++  +          S  R +  +          ++         
Sbjct: 122 GATVNRYLATVKTLLRYHRQPWEHIQLKKESKGRIRVISREEEAMVVNLLRDTDHGSRRL 181

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLL 245
             P +A    +   +G R S+    G + +  +   I           ++ + +    +L
Sbjct: 182 YFPEVADLVEVLADTGCRLSEVLNLGYEDINFDTNLITVWINKGDKPRSIPMTNRVGGIL 241

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
               +G        D  K+       W + K   AG      H +R  +AT   D G   
Sbjct: 242 QARQVGNPLKPFTIDIDKV--ETAWKWVRKKMGLAGDPEFVPHALRHTTATRLIDGGIDL 299

Query: 305 HELMATYGWKTVDQAETYTK 324
           + +    G  T+   E Y  
Sbjct: 300 YTVKEWLGHSTIQVTERYAH 319


>gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302]
 gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MAGKPKV--HIKHNRRKENLQLYLIAKPRTPVERQQNKETLELATKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRK--ITT 116
                + +          Y  S     L        +   ++      + +   +  I  
Sbjct: 112 GYRLKKDRNVNFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPLYEFSIKP 166

Query: 117 KHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             I   +  R             A       + + ++A+  E +  +PC  V     +  
Sbjct: 167 DLIIKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQI 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNHLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L            ++     +    S   K    +AG+N
Sbjct: 287 EQNKTKGHSANSGVIIPLNDGLLSLIGEAPEDLNSSIFNLPSYESCSKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes SK187]
 gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL074PA1]
 gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA2]
 gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA1]
 gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA2]
 gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA1]
 gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA2]
 gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA1]
 gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL007PA1]
 gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL056PA1]
 gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL036PA3]
 gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA2]
 gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA1]
 gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL045PA1]
 gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA2]
 gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA1]
 gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA2]
 gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA3]
 gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL078PA1]
 gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA2]
 gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA3]
 gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL038PA1]
 gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA2]
 gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL096PA3]
 gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA2]
 gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL043PA1]
 gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA2]
 gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL020PA1]
 gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL099PA1]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I T  +R+ +   +   +
Sbjct: 22  VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 82  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312


>gi|325579064|ref|ZP_08149020.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159299|gb|EGC71433.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 399

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 103/345 (29%), Gaps = 21/345 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPT 69
           +   + ++G     F    GRRIR                 L   + K E +N  ++   
Sbjct: 38  IRSGKNKYGVWQIDFTTPSGRRIRSSSGRTDKRLAQELHDKLKAESYKVERLN--KQPER 95

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124
           T++  +  + + A           +   +      + G  +   +T+  I          
Sbjct: 96  TVEDALICFLEDAEHQK----DLETKIHHAQYWRDRIGHKNLSSLTSDDIYNNLPTHKRT 151

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             + +PS+  ++ TS+      A +  +V     +       + +    W  +D      
Sbjct: 152 GERLSPSTQNRYRTSIMRALNLAKQAGWVD---AIPYLAKNNEPKKRVRWITQDEANRFL 208

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                   R    F L +G R S+        +       I T                 
Sbjct: 209 DSLNLEWMREVCSFALLTGGRMSEILTLTWDKIDFPRSIAIVTSDVAKSGHARSLPLPRN 268

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NKSAHGVRKFSATISA 298
            +      +          +      S      FK    +AG+ + S H +R   A+   
Sbjct: 269 AVNFLRQKETRRISQYVFHRGKGKMISDIDREDFKRALQRAGISDFSFHDLRHTWASWHI 328

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +G     L    GW+T++  + Y    +R  L   N  +++S +
Sbjct: 329 QSGTPLMVLKELGGWETIEMVQKYAHLNERHLLQYANHVKVTSKL 373


>gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 316

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 83/299 (27%), Gaps = 26/299 (8%)

Query: 70  TLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           TL      Y            ++  S ES+ +  +I K G+    +I  + ++    S  
Sbjct: 3   TLAEFAPRYMDGYVRANRQKPSTIESKESHLNAHLIPKLGEMRLDQIDNETVQRLKGSMS 62

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +    LT++  + K AV  + +   P         K E       E  +   +  
Sbjct: 63  SMSNKTVNNVLTTLNTMLKCAVEWKILEEMPARIRLLKVTKREAAFFDFDEYERLVAAAG 122

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITV 235
                 +L       +G+R  +        +      +              K   I  V
Sbjct: 123 KVEPWVQLMVLLGGDAGMRPGEVRALHWTSVDFQRQRLTIERNEHKGSFLLPKHDKIRRV 182

Query: 236 ELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            + D   + L+                    + M+      W      +A +     H +
Sbjct: 183 PMTDAVAQALSAHRHLRGPLVFYRDGGYAAGKVMSPRYQRYWLDKALRRANLPDLGPHTL 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R    +  A  GA A  +M   G + +   + Y        L          +++   P
Sbjct: 243 RHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMH------LSPAALESSIGLLNRARP 295


>gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans
           621H]
 gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC
           [Gluconobacter oxydans 621H]
          Length = 321

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 85/296 (28%), Gaps = 42/296 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITTKHIRS 121
            +E+         +  +  ++       +                G      +       
Sbjct: 14  WTEWLTHE--RRASPRTVEAYRHDVLLALTFFQQHLGAEVTLADLGKLSLADLRAWLAHE 71

Query: 122 GVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              S + T           S  + ++++R  F++   +  ++      +  P+ K    R
Sbjct: 72  TARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDLSNPAPSLLATPRTKKRLPR 131

Query: 173 PWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFS 223
           P  ++  +      S+         + R  F  L  +GLR  ++    ++ L N      
Sbjct: 132 PLGEDAARAAAEGISDDAETSLAALRDRALFTLLYGTGLRIGEALSLDIRDLTNAGQNML 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKA 277
               K G    V L    M+ L        +       F      ++N        +   
Sbjct: 192 RVVGKGGKERLVPLLPAVMEALESWKAAHPSPTPDAPLFCGVRGGRLNPGVAQRAMRTWR 251

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G+    + H +R   AT   + GA    +    G  ++   + YT  AD   L
Sbjct: 252 KGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYT-LADEKHL 306


>gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL072PA1]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I T  +R+ +   +   +
Sbjct: 22  VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 82  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312


>gi|304415198|ref|ZP_07395910.1| putative phage integrase [Candidatus Regiella insecticola LSR1]
 gi|304282945|gb|EFL91396.1| putative phage integrase [Candidatus Regiella insecticola LSR1]
          Length = 354

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 100/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYY----FRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
            + K     G + Y      ++G     R             + +       +    NS 
Sbjct: 8   NIVKRPRADGTVRYRCTAGVKEGGKHLHRETRTFGKLAQAKTWGTKRAAELEENGVPNSS 67

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
             +  T+  L+  Y    + G  A  ++       D ++     D     ++T H+    
Sbjct: 68  DIEKITVGELLKRYINDPNLGGKAGRTK---RYVLDMLLDCDIADTLLADLSTSHVIEYC 124

Query: 124 ESR---KHTPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R      PS+    ++ +  +       + +            +          +  +
Sbjct: 125 RHRNGAGAGPSTVNHDVSYLSSVLASAKPVYGIDYIANPATDARPLLLQMGLIGKSKRRS 184

Query: 176 KEDMQQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +  +         G + R               F + S +R  + C+   + +     ++
Sbjct: 185 RRPVSDELDRLLVGLEARSGHVAAKIPFVDILNFSILSCMRVGEVCKIRWEDIDEKQKAV 244

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV- 282
             +              + LL       +     ++     N+   +  F+      G+ 
Sbjct: 245 LVRDRKDPRKKSGNHMLVPLLGDAWTIVQHQPKTSELIFPYNSRSVTAGFQRVRNALGIK 304

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 305 DLRYHDLRREGASRLFEAGFSIEEVAQITGHRSLNVLWQVYTE 347


>gi|213692647|ref|YP_002323233.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524108|gb|ACJ52855.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458797|dbj|BAJ69418.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 396

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 96/357 (26%), Gaps = 50/357 (14%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            VT+ +T  G+  Y   +RK  G +              + +    +         P+  
Sbjct: 3   NVTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAG 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
             T+  L   +       +   +   + E  +   +  + G+     +T +  +  V   
Sbjct: 63  KATVGELGPAWLAKKKLST-KPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGI 121

Query: 127 KH---------------TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                             P SA   L +   +  +   A +   +  NP   +E P+++ 
Sbjct: 122 SQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRR 181

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---- 224
           +     T E + +     +   +  +        G+R  +     V  +      I    
Sbjct: 182 KKHVYLTAEQLDRLAGSVTPWRRDLVLVLG--LCGMRWGELIPLRVMDVDLEKHRIYIGV 239

Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK- 276
                        T         +  +L              D       +  +  +   
Sbjct: 240 SAPMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWG 299

Query: 277 ------------ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                         +AG+    + H +R  +A++   AGA    +    G K+    
Sbjct: 300 NASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356


>gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 279

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 94/268 (35%), Gaps = 18/268 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L  + +        +  ++I++  + +   +         +  + I++ +      RK
Sbjct: 2   SKLREQMKYDMDLKGFSEKTKIAYLKHVELFAKYF-KKSPELLGEEEIKAYLHHQLIERK 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S   Q  ++++ L++  +++E+        + R KR+ +  +  ++E++++  +  +
Sbjct: 61  MSRSYNTQAYSALKFLYETTLKREW----KSYKIPRCKREKKLPKVLSREEVKRIFNVTT 116

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245
              + R        SGLR S+     V  +        ++  K        L    ++LL
Sbjct: 117 -NPKHRAILMTTYSSGLRVSEVVNLKVNDIDGKRLQLFVQGGKGQKDRYTVLSRKNLELL 175

Query: 246 AMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                            +  + +        F+    KAG+  + S H +R   AT   +
Sbjct: 176 RDYWKLYHPKTWLFPGQDINEPLCVRTVQKVFENSVRKAGITKDVSVHTLRHSFATHLLE 235

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
           +G     +    G  ++     Y    +
Sbjct: 236 SGVDTFYIQKLLGHSSLKTTSIYIHVGN 263


>gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
 gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis
           ATCC 33277]
          Length = 420

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 91/317 (28%), Gaps = 18/317 (5%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS---RISF 95
           +              +    +   +  ++   L+     Y + A +     +S    +++
Sbjct: 94  YADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFISYFREAMYKRHKNSSTSILVNW 153

Query: 96  ESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS-----------SAIQFLTSMRVL 143
           +   D +   +G +  + KI               P            +A  + +  +  
Sbjct: 154 KRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPRGGNKCGTISHNTASTYFSIFKAA 213

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            K A    Y+ ++    ++  + +       T E++    S   +    + A  F   +G
Sbjct: 214 LKQAFIDGYLTVDISAKIKGIQEQESRREYLTVEELNTLASTPCDREVMKRAALFSALTG 273

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           LR  D  +   + +  +    +   T             +        +        +  
Sbjct: 274 LRHCDIQKLKWKEINMDGEQPRLHFTQKKTKGVEYMPISEQALQLCGERGLPEQLVFEDL 333

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            + +  S   K     AG+ KS   H  R   AT+   +    + +    G   V   + 
Sbjct: 334 PDPSWISKPLKRWIEAAGIKKSISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQI 393

Query: 322 YTKGADRIR-LGIKNSR 337
           Y K  D  +    +  +
Sbjct: 394 YAKVVDEKKNKAAQAIK 410


>gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           KPA171202]
 gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202]
 gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL013PA1]
 gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA1]
 gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA2]
 gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA1]
 gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL063PA2]
 gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL086PA1]
 gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL005PA4]
 gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA1]
 gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA3]
 gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL067PA1]
 gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL027PA1]
 gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL002PA1]
 gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA1]
 gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL037PA1]
 gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL053PA2]
 gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL059PA2]
 gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL046PA1]
 gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA1]
 gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL030PA2]
 gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL092PA1]
 gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA3]
 gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL083PA2]
 gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL087PA1]
 gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA2]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I T  +R+ +   +   +
Sbjct: 22  VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 81

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 82  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV-------NKSAH 287
              ++ +      +E +   +  Q         +       +     +       +   H
Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312


>gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL025PA1]
 gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL097PA1]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I T  +R+ +   +   +
Sbjct: 22  VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDALGRIGTSQVRAWLADTRVAGA 81

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 82  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 141

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 142 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 201

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 202 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 261

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 262 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 312


>gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae
           LPCoLN]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 98/294 (33%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDF------------------DYRKIT 115
           +Y K       + ++  ++          + + G+                    +   T
Sbjct: 10  DYLKMVKSA--SPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLFT 67

Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +H+R  +           +  + L+S++    + V Q+ +  NP  ++  P+   E   
Sbjct: 68  KEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELPS 127

Query: 173 PWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T       M         G + R   E    SGLR S+      Q    +   I+ + 
Sbjct: 128 PMTYAQVEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278
                  + +    ++ +       +           F+N   ++++       F+    
Sbjct: 188 KGKKERIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLR 247

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++G+  + + H +R   AT   ++G     + A  G  +++    YT+ + +++
Sbjct: 248 RSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLK 301


>gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1]
 gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 253

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 17/226 (7%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R  +  S  + L ++R   ++ + +++   +P   ++ P+   +     T E+++Q  +
Sbjct: 5   ARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLA 64

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPD 239
                   G + +   E L  +GLR S+ C  G+  +Q     +  +        V +  
Sbjct: 65  APDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGS 124

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNK--SAH 287
             ++ +     G     +   + +               F    K  A KAG+ K  S H
Sbjct: 125 VAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPH 184

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   AT   + GA    + A  G   +   + YT         +
Sbjct: 185 KLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAV 230


>gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58]
 gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58]
          Length = 310

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             LI  + +        + N+ +++ +         G             +         
Sbjct: 6   AALIDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLATH-WASLAG 64

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183
           SS  +  +++R  + +   +   A NP +++ RP  +    +  +  ++ +         
Sbjct: 65  SSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFALIAERL 124

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                     +     E L  SGLR ++      + L  +   +  +  G    +     
Sbjct: 125 EVAHPAPLDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARERLVPISD 184

Query: 241 FMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFS 293
             +      +        +   + K  ++  +     KA A  AG+     S H +R   
Sbjct: 185 RARAAVSAWLVHVPGDSAWLFPSGKSHLSRIRLYQLVKALAGAAGIAPERVSPHVLRHAF 244

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    L A  G   +   + YT    R         R+  +V+   P
Sbjct: 245 ATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSR---------RLVELVNQRHP 290


>gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           CWL029]
 gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           J138]
 gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           AR39]
 gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae
           TW-183]
 gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC
 gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila
           pneumoniae AR39]
 gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138]
 gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae
           TW-183]
          Length = 312

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 99/294 (33%), Gaps = 42/294 (14%)

Query: 77  EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDF------------------DYRKIT 115
           +Y K       + ++  ++          + + G+                    +   T
Sbjct: 10  DYLKMVKSA--SPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLFT 67

Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +H+R  +           +  + L+S++    + V Q+ +  NP  ++  P+   E   
Sbjct: 68  KEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELPS 127

Query: 173 PWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           P T       M         G + R   E    SGLR S+      Q    +   I+ + 
Sbjct: 128 PMTYAQVEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIRG 187

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKAT 278
                  + +    ++ + +     +           F+N   ++++       F+    
Sbjct: 188 KGKKERIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLR 247

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++G+  + + H +R   AT   ++G     + A  G  +++    YT+ + +++
Sbjct: 248 RSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLK 301


>gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 366

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 92/314 (29%), Gaps = 54/314 (17%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHI 119
            ++++          +  +   +        R                      IT   +
Sbjct: 44  ALTDFLAYLSGIKGRSALTIKEYHYDLVLFFRYYKILQKRVPHDLDFRAIPLDDITEADL 103

Query: 120 RSG----------VESRKHTPSSAIQ--FLTSMRVLFKWAV-RQEYVAINPCLSVERPKR 166
                          + +   S+A +   + ++R  FK+   +   +  NP   +E PK+
Sbjct: 104 NQIDLKILYSFIGWLANEKKASTANRSRKIATLRSFFKYHHTKTRLIKENPAAELESPKQ 163

Query: 167 KTEGIRPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             +  R    E+ +Q          +   +        L  GLR ++ C   +  +  + 
Sbjct: 164 LKKQPRYLEVEESKQLLQTVAQANSNFSQRDYCILTLFLNCGLRLAELCGINLGDIGEDT 223

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----------------QKMN 265
                 K G   TV L    +  L      ++    + +                  +++
Sbjct: 224 LR-VLGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEKKQAETPLFISRQGNRIS 282

Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321
                +  +     AG++    + H +R  +AT+    G      L    G  +V   E 
Sbjct: 283 HPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEI 342

Query: 322 YTK-GADRIRLGIK 334
           YT   AD +   ++
Sbjct: 343 YTHLDADSLHNAVE 356


>gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5]
 gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3]
          Length = 337

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+S  +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRESIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624]
          Length = 369

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 88/312 (28%), Gaps = 52/312 (16%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
             L+ +Y         LA  +   +    D++   +        ++ + H+R  +     
Sbjct: 35  DALVLQYLAHVRVEKRLAQRTVELYTLDLDKLGEFARQAGVSLLQVHSAHVRRWIAQMHA 94

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S       L+  R  + W  RQ Y+  NP   V  PK      +  + +D  +  S+
Sbjct: 95  GGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLASY 154

Query: 186 ------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                                 ++     E L  SGLR S+     V   +    + +  
Sbjct: 155 RGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRGW 214

Query: 228 KT------------GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQ 262
                         G    V +     K L                  G+   FI  +  
Sbjct: 215 LDLQAGEVEVQGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNGT 274

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++         K ++  AG+      H +R   A+    +      +    G   +   +
Sbjct: 275 RLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQ 334

Query: 321 TYTKGADRIRLG 332
            YT+  D   L 
Sbjct: 335 VYTR-LDFQHLA 345


>gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTS 139
              +  +   +     ++       G  D++++T   +R+ +  R    +  +    L +
Sbjct: 19  KGCSPGTISKYSQELGRLAEHLYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTVLAT 78

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGSQ 191
           ++  F++ VR+E    NP   +  P+R  +   P       Q +               +
Sbjct: 79  LKSFFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDR 138

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            R      L +G+R S+ C     ++       I T+K G    + +    +K+L     
Sbjct: 139 NRSIIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGKQQVLPMATELVKILDTYWT 198

Query: 251 GKE------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
                     +F     Q M           +  +        + AH +R   AT     
Sbjct: 199 PWYDAIPSEYYFCTKQGQPMTPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRR 258

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
            A   E+    G   V   + YT  +
Sbjct: 259 KANLIEIQNLLGHADVRMTQIYTHVS 284


>gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703]
 gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 366

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 96/333 (28%), Gaps = 32/333 (9%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
              AL            P   P +L  L+  +       + +  +  +   +  + I  +
Sbjct: 7   RADALLTVDDVYRKPIGPASDPKSLYALLLRFVAWRRERNWSETTLKTQTHHQYRFILWA 66

Query: 107 GDFDY---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVA 154
            +      R IT   +                  +  +    L  + V F W  R   + 
Sbjct: 67  AERGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLL 126

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDS 209
            +P   +  P+ +    R        +      +     G + R   E L  +G+R  + 
Sbjct: 127 ADPASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEV 186

Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--- 264
               V  +    +I +I   K      + +    ++ L           + N        
Sbjct: 187 AVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYVQAVRPQLLVNPHCPALFV 246

Query: 265 --------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                        +         +G+ K  S H  R   AT   + GA    + A  G  
Sbjct: 247 ALDGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHA 306

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +V+  + YT+ + R    +  S   +   DSD+
Sbjct: 307 SVESTQIYTQVSIRALQAVHASTHPAEQPDSDE 339


>gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
 gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624]
          Length = 296

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 85/276 (30%), Gaps = 24/276 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGV---ES 125
                Y  S      + ++  ++ +   +               ++    IRS +     
Sbjct: 3   EAFENYL-SLE-KKYSSHTVTAYLADVQEFAAYLTEVEPTMLLPQVNYSLIRSWIIHLVE 60

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R  T  S  + L S++  + + VR   +  +P +     K   +   P++  ++    S 
Sbjct: 61  RGITNRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSREIDSVLSQ 120

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPD 239
                     + +   E    +G+R ++     +  +           K      + L  
Sbjct: 121 PIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIPLIH 180

Query: 240 GFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVR 290
             ++ L             +   F+ +  +KM          +  + A   + KS H +R
Sbjct: 181 TVVETLEKYLTLRKGVETNEVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSPHVLR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   D GA  + +    G   +   + YT  +
Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSS 276


>gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 405

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 104/373 (27%), Gaps = 59/373 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----KREYINSPRKKPTTLKW 73
            G + Y  +   G +I +      T   A   A+                   K  +L  
Sbjct: 37  SGTMRYVCQYKRGGKINIGTVGVMTPAQAREKAVEILNDFNKGIDPKAKRGSNKLKSLGE 96

Query: 74  LISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
                   +  + H       +  +    FD++          +IT   I      R   
Sbjct: 97  FFENEYTPWVLTHHKRG--DKTLATIRRCFDKLF----SKPLEEITPSIIEQWRIKRLND 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSF 185
             + ++  + + +++ LF  AV   ++  N   +++  K      +R  + ++ +  +  
Sbjct: 151 GISNATLNRDIGTLKSLFTKAVEWGFIKENYLKNLKLSKIDRAPKVRYLSIDEERNLRRA 210

Query: 186 WSE-----------GSQPRLAFEFLLY---------------------SGLRCSDSCRAG 213
             E           G++ R A  + L                      +GLR  +     
Sbjct: 211 LFEREGKLKQDRKRGNEWRQARGYDLLPEYEENELCDYLTPMVLISINTGLRQGELFHLT 270

Query: 214 VQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--T 267
            + +     SI       K  +   + L +    ++        +        K N    
Sbjct: 271 WEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYGIIKQLYEKSNSKKGLVFLSKDNKPFN 330

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                +     KA +     H +R   A+    AG   + +    G   +     Y   A
Sbjct: 331 NIKRSWTTILKKAQITEFRWHDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLA 390

Query: 327 DRIRLGIKNSRRI 339
              +  IK   +I
Sbjct: 391 PEHK--IKAVNKI 401


>gi|117919693|ref|YP_868885.1| phage integrase family protein [Shewanella sp. ANA-3]
 gi|117612025|gb|ABK47479.1| phage integrase family protein [Shewanella sp. ANA-3]
          Length = 399

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 103/365 (28%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQSWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+K L  ++ +         +++  ++   D+ II   G    + +  
Sbjct: 87  PGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++   + P  A + L+ +R +F  A    Y           P            
Sbjct: 147 ADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIPLYTGGKTTRLIT 206

Query: 177 EDMQQFKSFW-----SEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++             +EG  P    LA         R S+      + +      +    
Sbjct: 207 DEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEFAARRSEIVLLEWEWIDLENRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + T    +        L                  N    +   ++   +      AGV 
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYGGWTRTLKAAGVP 326

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               HG+R  SAT  A++G      M     KTV     Y    D         R+ + +
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED------DPVRQAAEL 380

Query: 343 VDSDD 347
           V +  
Sbjct: 381 VANRR 385


>gi|296446709|ref|ZP_06888649.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255830|gb|EFH02917.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 423

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 95/352 (26%), Gaps = 43/352 (12%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLISEYRK 80
           R G  +++++     +T   A   AL       +           +   T + +  ++  
Sbjct: 51  RNGRSQKVKIGVFGPTTAEQARAQALNLLGAIEAGADPVAERRAARAVRTFRQVAEDFMA 110

Query: 81  SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
                     +  S+       ++ + G     +I    +     +   TP  A   ++ 
Sbjct: 111 QHVLTKRKPRTAESYRCLLDKYVLPELGAKRIVEIGRADVARLHSNLGTTPRQANAAVSV 170

Query: 140 MRVLFKWAVRQE-----------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  ++ WA R+E                         S E  +      R  T+      
Sbjct: 171 ISAIWGWAARREETEFGKNPATRLERFPERRWERYLSSEEMGRLGKALQRAETEGIPWMD 230

Query: 183 K------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +                       A   L+ +G+R  +       H+     ++    + 
Sbjct: 231 EEPQSKHGVKPENRRSIFDPFAVAAIRLLILTGMRPREVLNLEWGHVDFERGALFLPDSK 290

Query: 231 TIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
           T     +  G       +L  +          + +K + +  +  +  +  A   GV   
Sbjct: 291 TGRKTVILGGPALRVLSELPRVEKCPFVIAGRSLEKPRADLNRPWVAVRRYAKLEGV--R 348

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            + +R   A++ A A      +    G         Y    AD +R      
Sbjct: 349 LYDLRHSFASVGAGASLGLPIVGKLLGHSQPATTNRYAHLDADPLRHAANAI 400


>gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124
           L  L S+Y               + E       I   GD     +T +      I     
Sbjct: 86  LSELGSKYLAHMKASGRTEKHIRNIEHLVHHVFIPVLGDKPVDSLTYQEDMIPFILHFQG 145

Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               T       +  ++   +  +F + +   + ++NP  + ++PK +   ++  T +D 
Sbjct: 146 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKNWKKPKVQPWDMK-LTLDDA 204

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237
           ++         +  +   F L +    S+      + +     +++    KT T  TV +
Sbjct: 205 KKIMVNAEPHLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKTYRTVPI 264

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
              F+K L       +T ++     +   T     FK    +AG+      + +R   AT
Sbjct: 265 NPEFLKRLEKEQAESQTGYVIEYMGRK-LTTIRKAFKNACKRAGITYQTRMYDLRHLFAT 323

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGIKNSRRIS 340
                GA    +    G  TV     TY    +      +     + 
Sbjct: 324 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEKERAVNLLPALE 370


>gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
 gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4]
          Length = 310

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 90/293 (30%), Gaps = 30/293 (10%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P +L   +  Y +        + ++  ++     +        S + D  ++    +RS 
Sbjct: 8   PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 67

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +     ++  +  +S R    W  +   ++++P   +  P  +        +   
Sbjct: 68  LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 127

Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230
                    G         + RL  E L  +G+R  + C   V+ +  +   ++   K  
Sbjct: 128 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 187

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATK 279
              +V         L            ++   +                 S+  +  A  
Sbjct: 188 KERSVPYGLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 247

Query: 280 AG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            G  +   HG+R  +AT   + GA    +    G  ++   + YT    +R+R
Sbjct: 248 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 300


>gi|154496658|ref|ZP_02035354.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC
           29799]
 gi|150273910|gb|EDN01010.1| hypothetical protein BACCAP_00950 [Bacteroides capillosus ATCC
           29799]
          Length = 358

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 104/338 (30%), Gaps = 37/338 (10%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G      ++R   G R +       T   A     +        ++       T +  
Sbjct: 8   KRGTWYVMAWYRDWTGERKQKCKRGFPTKREAQDWERSFQMQTAADMD------MTFEAF 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------K 127
           +  Y K      L  N+ ++ E+    +I+   G     +ITTK + +           +
Sbjct: 62  VELYTKDVRPR-LKENTWLTKENIIQKKILPYFGKRKISEITTKDVIAWQNELLAYRDEQ 120

Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFK 183
             P S          +  +F  AVR   +  NP          + + +  WTK + Q+F 
Sbjct: 121 RKPYSQTYLKTLHNQLSAIFNHAVRFYELRSNPAAKAGNMGTEERKEMLFWTKAEYQRFA 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +      AFE L + G+R  +               +K  K+              
Sbjct: 181 EAMMDKPLSYYAFEMLYWCGIREGELLALTPADFDFEAGMVKISKSYQRLHGEDVITTPK 240

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                 T+++P+     +             +    +  +         A +AGV +   
Sbjct: 241 TKKSNRTIKMPNFLCDEMRDYLGMLYGVKKKDRIFTVTKSYLHHEMDRGAKEAGVKRIRI 300

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R    ++  D G +A  +    G ++++    Y  
Sbjct: 301 HDLRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAH 338


>gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 308

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 91/293 (31%), Gaps = 30/293 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129
              + Y  +     ++ ++   +      ++  +   G      +     R  + ++   
Sbjct: 15  DAFARYLAAERA--VSPHTLRGYVGDVRGLLSHASIEGAKRLEDLELGTFRRWLGAQSQA 72

Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------- 178
            +   +  +   S+RV   WA+ +E +  +P L ++ PKR+                   
Sbjct: 73  GAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPKREASLPGVLHSGQLARLLAGL 132

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            Q  +       + R   E L  +G+R  +     +  L  +  +++         TV  
Sbjct: 133 AQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDDLDPDRRTLRVIGKGNKERTVPY 192

Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                          + L       +  F+     +++  Q          + G      
Sbjct: 193 GVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVDQRQVRTMVNGLFKELGDTSASG 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            H +R  +AT   D GA    +    G  ++   + YT    DR+R   + + 
Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 305


>gi|312897736|ref|ZP_07757152.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310621120|gb|EFQ04664.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 361

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/379 (14%), Positives = 112/379 (29%), Gaps = 55/379 (14%)

Query: 1   MTPSLRLPPFVTKER-TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M+   + P        T +GK  Y++                +   A        +    
Sbjct: 1   MSKIKKRPDGRYVMTFTTNGKRRYFY------------GRTRSEAQAKYDEFIKKSENLA 48

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
             +       T+     E+ +     S+  ++  S+ +     I+ + G      +T   
Sbjct: 49  NFD----GNITIAEWAKEWLRIKEP-SITPSTLDSYRNVIRHYIVPEIGTIKLVDLTAPT 103

Query: 119 IRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           IR    ++    +  +     T +  + K AV  E +A N    V +PK           
Sbjct: 104 IRRLLTIKMETLSSRTVRYIHTLLNAMLKQAVLDEIIATNAAAKVRKPKLHRTKEMVTLT 163

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------ 230
            D  +         +  + F+    SGLR S+       ++  +  +I   +T       
Sbjct: 164 ADEVKLFLSKIPIPEHHMLFKLAFASGLRRSELLGLPWSNVDLDKKTITITQTVIKIDNE 223

Query: 231 -----------TIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNA 266
                      +  ++ L D  +  L                 +  +  F   D + +  
Sbjct: 224 AVISETTKNASSRRSITLDDETIAELKKHAQRVKATRLASPNWVHNDLVFPGKDGKPIFP 283

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
              S   K  A + G    S HG R   AT+  +AG     +    G  +  +   TY+ 
Sbjct: 284 DSVSQLCKRYAAQIGKPSFSMHGTRHTHATLLIEAGVNFKVIQVRLGHSSFTETMNTYSH 343

Query: 325 GADRIRLGIKNSRRISSVV 343
                 +      +I  ++
Sbjct: 344 LTPT--MEYDAVEKIEQIL 360


>gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684]
 gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684]
          Length = 313

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 26/288 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR-- 126
            +  ++           A  +R ++     Q +R +         +  + +R        
Sbjct: 18  WRRALALLESDLRRRGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRALRRYAAGLTE 77

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++  + L S+R LF+  V    +  NP   +  P++           ++      
Sbjct: 78  AGQAPTTVGRKLASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDR 137

Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
               +    + R  FE    SGLR  +     V  ++ +   ++ +  G     V   + 
Sbjct: 138 IPADTALALRDRALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEP 197

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKAT-KAGV----NKS 285
            +K +A                   F++   ++++ +      +  A   AGV      S
Sbjct: 198 ALKAIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVS 257

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLG 332
            H +R   AT   + GA    +    G  ++   + YT+    R+R  
Sbjct: 258 PHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSA 305


>gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 344

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 85/292 (29%), Gaps = 39/292 (13%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L+  + +Y         L+ N+  ++     + +R     G  D  ++    +   V + 
Sbjct: 23  LRAAVGDYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARGVHDPAQVDEAVVSGFVVAL 82

Query: 127 KHTPSSAI--------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +     A         +  +++R   ++   +     +P + V  P          T E+
Sbjct: 83  RTGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPRRLPTALTVEE 142

Query: 179 MQQFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------- 219
           +++       G          +     E L   G R S++    V  +            
Sbjct: 143 VRRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTPEVLGEGGLVR 202

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                     +                    LA    G    F+N    +++        
Sbjct: 203 LRGKGSRERLVPLGPCARSALERYLARSRPQLAAQGRGTAALFLNTRGDRLSRQSAWAVL 262

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++ A +AG+ +  S H +R   AT     GA    +    G  +V   + Y 
Sbjct: 263 QSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314


>gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
 gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185]
          Length = 311

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 88/284 (30%), Gaps = 32/284 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L  +++++         L+ ++  ++     + +      G      +    + + + S 
Sbjct: 10  LTQVMTQWLHHLRVERGLSPHTLAAYRRDVTRYLGYLAASGVTSLDGVEESRVEAFLRSL 69

Query: 127 KHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +           SSA + L ++R L  +   +          V  P+   +  +     D
Sbjct: 70  REGGQGHPPLAASSAARALVAVRRLHAFVSLETDAPDA-ATDVAPPRLPRKLPKAIPLAD 128

Query: 179 MQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232
           +++  +   +G      + R   E L   G R S+     V  +     S++   K    
Sbjct: 129 VERLLAAAGDGEDAGSLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRLFGKGSKE 188

Query: 233 ITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNATQFSIWFKAKATKAG 281
             V L       L      +                N    +++        +  A  AG
Sbjct: 189 RIVPLGRYAADALGSYLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVRRAAEVAG 248

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++   S H +R   AT   + GA    +    G  +V   + YT
Sbjct: 249 LDGEISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYT 292


>gi|189184134|ref|YP_001937919.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184809|ref|YP_001938594.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180905|dbj|BAG40685.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181580|dbj|BAG41360.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 118/329 (35%), Gaps = 19/329 (5%)

Query: 27  KGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           KG  R+I+L         +       L G   K       +    TLK +   Y      
Sbjct: 52  KGVYRKIKLGNFPNISVNYARKKTLILKGQIAKGIDPLKTKNAS-TLKEVYDLYINH--- 107

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVL 143
             L  +S+I ++   ++ ++         I  + I      ++K    SA + L  ++ +
Sbjct: 108 RKLKDSSKILYKGIMNKYLKNLHYIHVSNIRKEDIYKIFNNAKKGGKYSANKTLKLIKAI 167

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--LY 201
              AV  E +  NP   ++   +     R  T E+M +F +   E   P L +     LY
Sbjct: 168 LNIAVELELIEKNPANGIK-IHKMQARDRYITLEEMPRFLAAVEEDKNPYLKYFVYISLY 226

Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +  R ++      ++++    ++ I   K G   TV L +  ++ L       E+ ++  
Sbjct: 227 TAARRNNVLSMRWENIRLEEGVWYIPETKNGESQTVPLINLLIEKLKQYSYSSESEWVFP 286

Query: 260 DKQKMNAT--QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +++ +      ++ +K    +AG+     H +R+   +  A  G     +         
Sbjct: 287 GQRRNSGHLTSINVAWKRVCKRAGLKNLRIHDLRRTVGSWMAKFGMPIAVISKLLNHNDH 346

Query: 317 DQAETYTK-GADRIRLGIKNSRRISSVVD 344
              + Y     + +R      ++ ++ + 
Sbjct: 347 QSTKFYIHLNTNVVR---DAIQKFANEIA 372


>gi|300856827|ref|YP_003781811.1| putative phage integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436942|gb|ADK16709.1| predicted phage integrase [Clostridium ljungdahlii DSM 13528]
          Length = 391

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 103/362 (28%), Gaps = 49/362 (13%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHWGSLAVN 90
           RIR      +T   A  +        ++      +         I ++  +     LA +
Sbjct: 32  RIRETDSGFTTKKEARAAGRKKEIELKDKTTLGFKNNKIKFSKFIVDWLNTIKPQ-LANS 90

Query: 91  SRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
           + + ++   D+I I   GD    KI    I +          ++ ++  Q+   +   FK
Sbjct: 91  TWVRYKIAVDKIMIPALGDKYLDKIKPSDINAMYLHCTNDLGNSTTTIRQYHWILSKAFK 150

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A+R + +  +   +++ PK+    +  + K+ +        +     +       +G+R
Sbjct: 151 NALRWKIIDYDIMTTIDPPKKAKRELTVYNKDQLFLLLDRI-KNLTCYMPVLLSSTTGMR 209

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----------------------------E 236
             + C    + +      I   +    +                               +
Sbjct: 210 LGELCGLRWKDVNLKDKEIYITRQLQKVDGELQLLELKTPTSKRKIPLLDYTIKGLEDLK 269

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK------ATKAGVNK-SAHGV 289
               + K        +       D         S  +           K  +     H +
Sbjct: 270 QIQEYNKSKNENYDKRSFVICKEDGSPYEPNYVSKNYTRVMKQYNVCKKLNIPYIRFHDL 329

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV--DSD 346
           R   AT+   A      +    G  TV     TY+     ++       ++ +++    +
Sbjct: 330 RHTYATMLLVANTNPKVVSELMGHSTVSMTLNTYSHVLPSLK--ENAINKLENLLFPGDE 387

Query: 347 DP 348
           +P
Sbjct: 388 NP 389


>gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 407

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 98/362 (27%), Gaps = 28/362 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    ++   +   R +    +Y   K      R              +       +   
Sbjct: 54  MIGKPKV--HIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRAEREQQFKESML 111

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                + +          Y  S     L        +   ++      +           
Sbjct: 112 GYRLKKDRSINFLDYYQAYIDSYTKKDL-----RMIKIALNRFKDFLKEQYPVYEFSIKP 166

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             IT   ++  VE  +       A       + + ++A+  E +  +PC  V        
Sbjct: 167 ELITKDMMKHFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMQKDPCKGVVCKVDDQV 226

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +      +        + +E    R AF   LY GLR  D      +++      +K 
Sbjct: 227 LRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVDYTNRLLKF 286

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           ++  T          + L   L            ++     +    S   K    +AG+N
Sbjct: 287 EQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLPSYESCSKSVKRWVKRAGIN 346

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           K  S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  
Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKSEAINSLPE 404

Query: 342 VV 343
           + 
Sbjct: 405 LK 406


>gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506]
          Length = 328

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 91/321 (28%), Gaps = 46/321 (14%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRIS 94
                     A ++ L G+ P              +   +  +     H   L+  +R +
Sbjct: 2   ASTDAQKAARAEIALLAGAAPD-------------VAVALKGWLARLGHERRLSPKTREA 48

Query: 95  FESY----FDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143
           +          + R+ G          ++ + +R+ + +R+       + ++FL + R  
Sbjct: 49  YARDMSIFLGLLARQIGRQPEIADLANLSPREVRAVIAARRAEGIEARTQMRFLAAARSF 108

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRL 194
            +   R+    +    +V  P+      RP +  D +           +       +   
Sbjct: 109 GRHMEREGLGKVGALTAVRAPRIARTLPRPLSPADARAMADPATRAGEEREPWVLMRDAA 168

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
               L  SGLR S++     + +         +   K G    V +     +++      
Sbjct: 169 VIALLYGSGLRISEALGLMRRDMPEPGRGDQIVVHGKGGKTRMVPVLRQVAEMVDAYVCA 228

Query: 252 KETF-------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302
                      F       ++     +  +      G+    + H +R   AT     G 
Sbjct: 229 CPYELEPSSSLFRGAKGGPLSPRIVQLAVERMRGGLGLPDSATPHALRHSFATHLLGRGG 288

Query: 303 TAHELMATYGWKTVDQAETYT 323
               +    G  ++   + Y 
Sbjct: 289 DLRSIQELLGHASLSTTQIYA 309


>gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
 gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4]
          Length = 284

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 89/281 (31%), Gaps = 30/281 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124
              + +S         +   + S  +  ++   + +  ++TT+ + + +           
Sbjct: 15  FQYFIQSLKLSGAGQGTIKLYYSAINDFLKFV-NKNPNEVTTQDVINWINVLSVREGRSK 73

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              RK   S+   ++ ++R   +W                 P+ +T   R   +E   + 
Sbjct: 74  TGDRKGRASTIRSYVIAVRRFLRWLGVNV--------RPPVPRIRTPERRAL-RESEIEN 124

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
                +  + R     LL +GLR S+     V  L     +I+ ++T      +      
Sbjct: 125 IISSCKRLRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRVRETKNGEERIVFFTAR 184

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
              L    I K     N    ++         K    K G++    H +R   AT +   
Sbjct: 185 TASLLNQFIRKTKKGENERVFEITYQALYKLVKRLGKKNGISWLRPHILRHTFATNAIKK 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           GA    +    G K +   + YT       L   + +R+  
Sbjct: 245 GAPLPVVQRLLGHKDIKTTQIYTH------LMTDDLKRVYR 279


>gi|306831022|ref|ZP_07464184.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427045|gb|EFM30155.1| phage integrase family site-specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 385

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 103/364 (28%), Gaps = 46/364 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
                 ++ K R      IY    G                  + + +       E    
Sbjct: 9   KKSKTGYLYKVR------IYRVIDGKRHDYFKSGFKTRREAKEHEAIIYHKKLTGELTEL 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +    T + +  E+ K+         S  + + +   I+   G+F   KIT    +  +
Sbjct: 63  LKASERTFEEVFEEWFKTYQDTVERTTSVRTDDMFRLHILPILGNFKISKITPWQCQEFI 122

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T  +  Q  +    +F +AV+ + +A NP   +  PKR  +    +   D     
Sbjct: 123 TEKGKTFRNIKQVKSYANQVFNFAVKMKLIAENPMRDITLPKRDHKQSDNFFNVDELHEF 182

Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------I 224
                  E  +    F  L YSGLR  +        +  +                    
Sbjct: 183 LAIVKAEESYKDYALFRLLAYSGLRKGELYSLRWSDIDFDKQILSITKNLGRIRGKAVEK 242

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMN 265
           +T+   ++  + L D  + +L                               +   Q + 
Sbjct: 243 RTKNRFSVRQIPLDDETISILREWKVRSKKEKGQLSVTPLIENDYIFTFVDRDGKIQPLY 302

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               +   K    K  + K S HG R   AT+  + G          G  +     +TY+
Sbjct: 303 QDYINYNLKRIIDKHNLKKISPHGFRHTHATLMIEIGVDPVNAARRLGHASSQMTLDTYS 362

Query: 324 KGAD 327
              +
Sbjct: 363 HVTE 366


>gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5]
 gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5]
          Length = 395

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 20/287 (6%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              +    I  Y         + +   S++S   ++++      +  +T K I       
Sbjct: 115 TENSFTDYILNYLNENKSRLRSESWW-SYKSQITKLLKFRKHISFADLTEKFINEYQHYM 173

Query: 127 KHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +T     ++  + L S+R     A+R   +  NP       K+        + E++ + 
Sbjct: 174 LYTLHNNENTVSKSLRSLRTFINIAMRYGLIKTNPFK-YITIKKVDGKRDFLSAEELSKL 232

Query: 183 KSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
              +                F F  Y+GLR SD        ++NNI  I   KT  ++++
Sbjct: 233 SDAYISNKIIDEQEKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMHKTNCLVSI 292

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            L    ++LL      +  +       K+         K    + G+ K  + H  R   
Sbjct: 293 PLSQKALQLLPNKINSESDYVFRVYCNKVTNR----VLKQVGKRYGIPKKLTCHVARHTF 348

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339
           AT+S   G     +    G  ++   + Y K  D      ++   ++
Sbjct: 349 ATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDKL 395


>gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15]
          Length = 310

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 89/279 (31%), Gaps = 22/279 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKH-- 128
           ++E+ +        +  +  S+     ++    G      ++++T   +R  V +     
Sbjct: 9   LAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRRYVATLSREG 68

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S  + L++ R  +++ +R++  + NP L +  PK      R    + +        
Sbjct: 69  LSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVADVDQLNHLLDGQP 128

Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
           +     +    FE +  SGLR ++     +  +      ++    G     + +    + 
Sbjct: 129 DDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVRVMGKGGKERLLPVGRKAIA 188

Query: 244 LLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFS 293
            +      +           F++   ++++                A      H +R   
Sbjct: 189 AIQAWVPYRAALANDGEAALFVSQRGERLSHRSIQARLSRWGISRGADQKLHPHLLRHSF 248

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A+   ++      +    G   +   + YT   D   L 
Sbjct: 249 ASHMLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 286


>gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 263

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 75/240 (31%), Gaps = 13/240 (5%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +   G  D   I T  IR+ V S       P+S  + L++++ L K+   +  +  +P 
Sbjct: 7   FLETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFEERVIEKDPS 66

Query: 159 LSVERPKRKTEGIRPWTK----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             V  P+R     R  +       +        +G +     E L   GLR ++      
Sbjct: 67  GRVRGPRRSDRLPRAMSVEQVSRMIDCAYDDDEQGLRNGALIELLYGCGLRVAEVVSVRW 126

Query: 215 QHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQ 268
           + ++          K      V       + L        P  +  F           T 
Sbjct: 127 EDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYVFPGKKRGCLTVRTV 186

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +   A A       + H +R   AT   + GA+   +    G + +   + Y +   +
Sbjct: 187 HRVVVAAAAKAGVNGVTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQ 246


>gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803]
 gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/360 (10%), Positives = 101/360 (28%), Gaps = 46/360 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKPTTL 71
            +  +G   Y  +       +     +  F     + +  +  ++  +N       P +L
Sbjct: 11  RKVSNG-WQYRIKFKDPYTHQYKEKTKRGFKTKKEAQIAATEEEQRILNGFEIDSVPVSL 69

Query: 72  KWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K+ + ++       ++  N+  +   +    II    + + + +     ++ +       
Sbjct: 70  KYFLEDWLTVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFLNHLTDQG 129

Query: 131 SSAIQFLTSMRVLFKWAVR-------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S        R +     +       +     +  +S +  K++       T +     K
Sbjct: 130 YSKGTVKIIHRTMNNAMCKANSLKKIETNPCSDAVISNKNQKKEEGLKYMRTGDIPLFLK 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------------I 224
           + +       + F+ L+ +G+R  ++       +     +                    
Sbjct: 190 ASYQYNYIYYIFFKTLINTGMRKGEAAAIQWSDIDFKENTINITKTLDFQTKEGEDLFGD 249

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFS 270
               +              LL       E   +  +  K +               +   
Sbjct: 250 TKTFSSRRTITIPDSLAKDLLNHKKWQNENKLVLQESYKHDLNLVFTKVDGSHLPKSTLF 309

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                   KA +     HG+R   A +  ++GA    +    G K+++     Y+  +D+
Sbjct: 310 NALTRILKKAELPYLEIHGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369


>gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
 gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium
           BAL199]
          Length = 276

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 89/274 (32%), Gaps = 18/274 (6%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
            +     +L+  ++ S+     +  R   D    ++  + +R+          + ++  Q
Sbjct: 2   IEDMTVRNLSPATQRSYVLAVSKFSRYF-DRSPDRLGLEDVRAFQVHLVSTGISWAALNQ 60

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + ++R  +   +    +       +   +         + +++ +F        + R A
Sbjct: 61  TVCALRFFYGVTLGHGEIP----ERIPYAREPRNLPVVLSADEVVRFLEAV-ASLKSRAA 115

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 +GLR S+     V  + +    I+    K G    V L    + +L        
Sbjct: 116 LTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLAR 175

Query: 254 TFFINND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                       + ++        ++    AG++K  + H +R   AT   ++G     +
Sbjct: 176 PEHWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRII 235

Query: 308 MATYGWKTVDQAETYTKGADRI-RLGIKNSRRIS 340
               G   +     YT+ ++ + R       R++
Sbjct: 236 QVLLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269


>gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
 gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42]
          Length = 323

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 77/295 (26%), Gaps = 40/295 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132
           +Y +       LA  +   +     ++   +   D    ++T+ HIR  V        S 
Sbjct: 16  QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186
                 L+  R  + WA RQ  V  NP   V  PK      +    ++  +         
Sbjct: 76  RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232
                ++     E L   GLR  +     V          +                   
Sbjct: 136 DPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHVFGKGSKR 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATK 279
            +V +       L      +          ++              A       + ++  
Sbjct: 196 RSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPALFIGRRGARLTAQSVWSRLRQRSQV 255

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 256 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 309


>gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
 gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B]
          Length = 335

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 13/260 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
              Y        L+  +  +++ + +++ +         I+T  +R  +    +    S+
Sbjct: 62  AQLYLACKKLEGLSSKTLYNYKLFLNKLDQYF-TKPCSTISTMDLRMFLALLGKGKKAST 120

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
              ++T ++  F W   +EY+  NP   +++ K     +  + K +  +      E  + 
Sbjct: 121 VNGYITYLKNFFGWLQNEEYIIKNPAFKLKQAKVPKVILEGY-KAENLEKLREACETKRE 179

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +  FE L  +  R S+     +Q +  N      T K      V         L      
Sbjct: 180 KALFELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYFSTRAKLALENYLKS 239

Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303
           +     +    K                K    ++GV +  H    R+  AT   + G  
Sbjct: 240 RNDDNNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHTHKFRRTQATRLLNQGMR 299

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G  T    + Y 
Sbjct: 300 IEGVQGILGHTTPTTTQIYA 319


>gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
 gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens
           ATCC 49725]
          Length = 305

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 23/280 (8%)

Query: 72  KWLISEYRK-SAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRK 127
              I ++          A  +   + +    +        DF+   +  + + + V   K
Sbjct: 18  DEAIEDFADFQLCVKGRAEATVRGYRADLKNLAQDIDTFADFNLNNL-RQWLGNAVAEGK 76

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQF 182
              + A +   S++    WA R+ Y+  +    +  PK           +          
Sbjct: 77  ARATLARRT-ASVKAFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV 135

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
               +   +     E L  SG+R ++  R  ++ +     + +          V      
Sbjct: 136 SVDEAHFQRDSAILELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAA 195

Query: 242 MKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
              L     G        + Q         +++  Q        AT  G    + HGVR 
Sbjct: 196 TDALQQWIDGGRKEMARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +AT   + GA    +    G  ++   + YT      RL
Sbjct: 256 LAATHLLEGGADLRVVQELLGHSSLSTTQIYTH-VSAKRL 294


>gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3]
 gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3]
          Length = 298

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  Y         L+ ++  +++S   Q     G  D R        + +       S+ 
Sbjct: 6   IQRYLDFCAIQRRLSSHTIRAYKSDLHQYYN-FGTNDIRS-----YLTFLNQHIKKTSTL 59

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWT-------------KEDM 179
            + + S++  +K+   ++ ++ NP   +    K + +  +  +             + + 
Sbjct: 60  KRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQKIYCFAHQQIEN 119

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVEL 237
            + K    +  +  L    LL +GLR S+ C   + ++     +I+    G    +    
Sbjct: 120 SKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILGKGKKERLLYIG 179

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGVNK--SAHGVR 290
            D  + LL        +          N          +  K  +    + K  + H  R
Sbjct: 180 NDETLSLLEDYIAHHCSHSSYLFTGVKNDDHLKEPSVRLILKNISHSLQLKKHITPHMFR 239

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+  D G    ++    G   ++  + YT  +   
Sbjct: 240 HSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSK 278


>gi|313609398|gb|EFR85005.1| phage integrase [Listeria monocytogenes FSL F2-208]
          Length = 359

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 104/344 (30%), Gaps = 39/344 (11%)

Query: 12  TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            ++  + G     +Y++   G+R++       T   A              + S      
Sbjct: 4   YRDEDK-GNWFVSFYYQDWKGKRVKKLKRGFKTKKEA------QEWENNFKLQSENNLDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
             K  +S Y KS     +  N+ IS E   + +II   G+    +I    I         
Sbjct: 57  KFKDFVSMY-KSDIKTRVKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNELIG 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKE 177
                    +P+        +  +F  AVR   +  NP  +V     K        WTKE
Sbjct: 116 YRNDRGEGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVWTKE 175

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           +  +F     +      AFE L + G+R  +              ++   K+        
Sbjct: 176 EYIKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPSDFNFEEGTVSITKSYQRIKGED 235

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                        + +PD  +  +             +    +         K  AT+  
Sbjct: 236 IITTPKTEKGKRIINMPDFLVDEMQDYISRLYGCKPKSRIFPITKAVLYSEMKRGATEQN 295

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + K   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 296 IKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDITYHYAH 339


>gi|121535734|ref|ZP_01667537.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
 gi|121305699|gb|EAX46638.1| phage integrase family protein [Thermosinus carboxydivorans Nor1]
          Length = 393

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 87/333 (26%), Gaps = 38/333 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
                ++ Y            AL        Y++       T+   ++++       ++A
Sbjct: 33  GKPVRKVVYARTKAEAKQKRDALAAQYEAAYYVD---ADKITVGDWLAKWLDVYARPAVA 89

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLF 144
            ++   +E      +I   G     ++    ++  + S      SA       + + +  
Sbjct: 90  PSTYDWYERICRVHLIPAIGHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMAL 149

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           + A +   +   P   V  P+ + +  RP T ++     +          A      +GL
Sbjct: 150 RVARKHGLLRTLPTDDVAVPQVRKQDKRPLTPDEWDALLTAAQTAPDIFAALVVEWATGL 209

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------------------T 234
           R  +        +  +   I  ++   I                                
Sbjct: 210 RRGELLGLMWDDIDFDRCLINVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAH 269

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                                F  +     +   +S  F   A  AG++   H +R    
Sbjct: 270 RARQMQCRLAAGPAWQDCGLVFPTSGGTLYDPRNWSKRFARIAKAAGLDIGVHHLRHDLT 329

Query: 295 TISADAGATAHELMATYGWKTVDQ-AETYTKGA 326
           +    AGA   E     G  TV    + Y    
Sbjct: 330 SRIVAAGAPVKEAQYRLGHATVKMLLDVYAHRV 362


>gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7]
 gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7]
          Length = 361

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 106/345 (30%), Gaps = 37/345 (10%)

Query: 14  ERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + G+           G + +    +  T   A    +  +  +     S      T+
Sbjct: 7   YKRKDGRWECRIRVEDKDGHK-KYRSFYGKTQEEAEYKMMEETGGRNTSGESITV--MTV 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + L  E+        +  ++  ++       I+ + G      I T+ I   ++ +    
Sbjct: 64  RELAWEWLFVMKNR-IKDSTASNYRMKIERHILPEFGAKVCASIKTRMISEFIQKKLSQG 122

Query: 131 SSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            SA      +T M+ ++++A  +  +  N    V  PK+    I   T E+ ++   + +
Sbjct: 123 LSARYVGDIITVMKAMYRYAANEYNI-TNVIEGVVMPKKAKPEINIMTAEEKRKLVYYIN 181

Query: 188 EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  LA    L++G+R  + C    Q +      +  + T   I         K++ 
Sbjct: 182 TNHNETTLAVALSLFTGMRIGEVCALSWQDIDIEKRVLYVRHTIQRIQNYDGKSKTKIII 241

Query: 247 MTPIGKETFFINNDK-----------------------QKMNATQFSIWFKAKATKAGVN 283
             P  + +                                +        FK+   + G+ 
Sbjct: 242 TEPKSQSSKREIPIPECLVPMLTELKRKPDSYVLTGTGTPIEPRTLQYRFKSILNRLGLG 301

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
             + H +R   A+ + + G     L    G  +     + Y   +
Sbjct: 302 SFTYHSLRHKMASEAIEIGFDVKTLSEILGHSSSQITLDRYVHSS 346


>gi|254452216|ref|ZP_05065653.1| integrase [Octadecabacter antarcticus 238]
 gi|198266622|gb|EDY90892.1| integrase [Octadecabacter antarcticus 238]
          Length = 389

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 107/328 (32%), Gaps = 16/328 (4%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPK-----REYINS 63
           V       GK  Y +++  GR  R+ L    + T   A   A +           +    
Sbjct: 36  VLAVTPAGGKSFYLYKRIDGRPERLLLGKFPDLTVENARKLAASAKGEIAMGENPQKAKR 95

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +   T   L +EY +      +   S    E   ++ ++         I    +    
Sbjct: 96  SIRDEMTFGALFTEYLE--KHSKVHKRSWAYDEREVNKFLKHWFKRKISSIEKPEVERLH 153

Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +++    A + L  +R +F  A    +  +NP   +++ + K+       +E  + 
Sbjct: 154 AKVGKENGLYQANRLLERIRSIFSKATDWGWNGVNPATGIKKYREKSRDRFLQPEELPRF 213

Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVEL 237
           F++  +E     R  F   L +G R S++       +  +  + +  +T      I    
Sbjct: 214 FEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEISFHGETWRIARTKNDDPQIVHLS 273

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
           P     L          +    D    +       +     +AG+ +   H +R+   + 
Sbjct: 274 PQAMEILKERKLHSLSPWVFPGDGASGHLADPKKAWMRILKEAGIADLRIHDLRRTLGSW 333

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  GA ++ +  + G ++      Y +
Sbjct: 334 QAATGANSYIIGKSLGHRSQQSTAVYAR 361


>gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
 gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
                  + +   E L  +GLR ++     ++++      ++    G     V + +  +
Sbjct: 191 PNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAI 250

Query: 243 KLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
             +                    F +   ++M    F    K  A  AG++    S H +
Sbjct: 251 DWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHVL 310

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT   + GA    +    G   +   + YT  A   
Sbjct: 311 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER 350


>gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574]
 gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574]
          Length = 418

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 3/212 (1%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++A  + +  +   K A    Y+ I+    ++  + +       T +++ +  +   E
Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               + A  F   +GLR  D  +     +       K   T             +     
Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306
                       +   N +  S   +A   KAG+  + S H  R   AT+    G   + 
Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYT 378

Query: 307 LMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337
           +    G   V   + Y K  D  +       +
Sbjct: 379 VSKMLGHTNVKTTQVYAKVVDEKKNKAANAIQ 410


>gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 328

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           LI  +  +      +  S   ++S  +  + K    +   ITT  +R       E    +
Sbjct: 53  LIDNFIAAKKVEGCSDKSISYYKSTINNALVKI-KKEVVHITTDDLRGYLNQYQEESGAS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        +T E ++Q +      
Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHC-SN 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  R     +       I T K      V         L   
Sbjct: 171 IRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKY 230

Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +           ++           I  +    +  + K   H  R+  AT++ D G
Sbjct: 231 VNSRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G +++D    Y 
Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312


>gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 332

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 33/288 (11%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKIT---------T 116
           L   I  +         +L++N++ S+       +       +    ++T          
Sbjct: 7   LGPWIRRFLLEYLVRERNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIR 66

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +    ESR    ++  Q L  +  L ++        I  C  +     K       T 
Sbjct: 67  QFLSDIEESRHCLAATRNQRLGGLHALARFIGENSPEHIEWCSQIRLIPFKKTAYPGITY 126

Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  +             +G +      FL  +G R S++    +  +  +         
Sbjct: 127 LEKPEMDALLESPDRQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHIIGK 186

Query: 230 GTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           G               ++ LA      +  F+N + Q +         +  A +A V   
Sbjct: 187 GNKRRTCPLWPTTLDQLRALATQRGLDQRVFLNRNGQPITRFGIHTMVERHAARACVQVP 246

Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  S H +R  +AT    AG   + + A  G  ++     Y + 
Sbjct: 247 SMSTKQVSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAET 294


>gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
 gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQRNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016]
 gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555]
 gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/367 (11%), Positives = 103/367 (28%), Gaps = 66/367 (17%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQI 102
           +            + E          T +  I ++ K      LA  +   ++     +I
Sbjct: 44  LEEANKQWVLFKDEIEKGIYLDSGKITFEEFIKKWLKDYAEAELAPKTLYRYKELLYTRI 103

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQ 150
           I   G     K+   HI     + +             +  + +     +  +   A++ 
Sbjct: 104 IPALGHIKLNKLQPTHITEFYSNLREDGIRNDGKPGGLSERTILHHHRLISSILATAIQW 163

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDS 209
            ++  NP L ++ PK + +  R +  E+             + +      +Y G+R  + 
Sbjct: 164 GFILNNPALRLKAPKVEKKEARHFNIEETAYVLQLIENEPIKYKTMITLAIYGGMREGEL 223

Query: 210 CRAGVQHLQNNIFSIKTQKTGTII------------------------------TVELPD 239
                  +  +  +IK  K+   +                                   +
Sbjct: 224 TALTWSDINFDDCTIKINKSLQHLPGRDTFIKSTKTETTRLISIPISVMTLLKEYKRWQN 283

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG------------------ 281
                L       +  F   D + +  +  S WF     K                    
Sbjct: 284 TEKLKLGNLWHDSDALFTATDGKSIFPSTISKWFLKFIRKHNESIINDDKIPPKDKSKYL 343

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGADRIRLGIKNSRRI 339
               + HG+R  SAT+  + G     +    G   T    + Y+      +  ++ + ++
Sbjct: 344 LKEVNFHGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQ--KADVEAADKL 401

Query: 340 SSVVDSD 346
            ++ +++
Sbjct: 402 ENLFNNE 408


>gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
 gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC
           49176]
          Length = 331

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           +  +S +  +      +  +   + +    ++ K+   + RKITT+ +R       +   
Sbjct: 54  EDFLSMFLSAKKIEGCSERTIKFYRTTIKHLLSKT-KTNVRKITTEEMRKYLSDYQKWNN 112

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +      ++   F W   ++Y+  +P   + + K KT      + E +++      
Sbjct: 113 CSNVTIDNVRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSTISDEGIEK-LRDNC 171

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +     +  +       I   K      V         L 
Sbjct: 172 KEKRDLAIIDLLYSTGIRVGELVNLNIDDIDFEGRECIVYGKGDKERRVYFDAKAKVHLK 231

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +           +    ++  +   I  +       + +   H  R+  AT + D
Sbjct: 232 EYVDTRSDTNSALFVTLDAPYDRLKISGVEIRLRELGRSLNIERIHPHKFRRSMATRAID 291

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 292 KGMPIEQVQKILGHSQIDTTMQYA 315


>gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29]
 gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29]
          Length = 305

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 27/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHI----RSG 122
           L+++I +Y +      LA  +  S+    ++            +   IT + I       
Sbjct: 4   LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIKSYLLYC 63

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172
            + R +   +    L  ++  F++   +            +         +     +  +
Sbjct: 64  SKERGNAVVTRNGKLQHLKTFFRYLEDEDVIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQ 123

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231
                   + +       +       L  +G+R  +        +     +I    K   
Sbjct: 124 MLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRK 183

Query: 232 IITVELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVN 283
            ++  L D   + L    +  E ++         ++    +      + F   + + G  
Sbjct: 184 SLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGFK 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH  R   A+    AG   + L        +   E Y   
Sbjct: 244 TTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285


>gi|254501363|ref|ZP_05113514.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222437434|gb|EEE44113.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 362

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 127/353 (35%), Gaps = 30/353 (8%)

Query: 10  FVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + R   G++  YY+ +    R++   P    F+ +  +A+     +           
Sbjct: 9   NIIRRRLATGEVRTYYYHRATNTRLQ-GEPGSPEFLSSIAAAVEQCRQR---------DA 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGV 123
            TL  LI E++++A W  LA  ++  +   F     + G   Y     +      I+   
Sbjct: 59  GTLGGLIREFQQTAKWRRLAETTQNEYRRIFKFWEDQYGTCPYPALEDKAFRRAVIKWHD 118

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +  P  A   +T +  +  WA R   +  N     ER  +     + W  E ++ F 
Sbjct: 119 AFSEAKPREADNRVTVLARVLSWATRDGPLKRNVLDGFERAYQSDRSDKIWLPEHVEAFM 178

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVEL 237
           +      + +LA    L++G R  D  +    +      S++  K+         +T++ 
Sbjct: 179 AV--ASPEMKLAMVLALHTGQRRGDLLQLNWNNYDGERISLRQGKSRRGKIEGRLVTIKC 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                + L   P            +      F++ ++    +AG+ +   H +R  + T+
Sbjct: 237 TRALKETLDHLPKRSTLILTTKTGKAFKKRYFALQWEKTCREAGIEDLHFHDIRGTTVTM 296

Query: 297 SADAGATAHELMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              AG    E+++  G    +  D  + Y   A    +      +  +V+++D
Sbjct: 297 LFQAGCNLGEIVSITGHCLRRAQDILDKY--LARTSTMADNAIAKFENVLETD 347


>gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
 gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein
           [Lactobacillus amylovorus GRL 1112]
          Length = 284

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 85/266 (31%), Gaps = 12/266 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126
           + LI E+ +       A  + + +E    +             ++    +   +E +   
Sbjct: 7   EKLIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKS 184
               S+    L++ RV   WAV + Y++       + PK        R   +        
Sbjct: 67  CLKVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHY 126

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
             +     R AF  L+ SG R +++     + +     +    I+  K G+   + + D 
Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDA 186

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
               +      +          +++      +    A   G+N   H +R   A +  + 
Sbjct: 187 DAAKIVWKYRTEVEVDNRPLF-RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLLTEK 245

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G K++     Y + A
Sbjct: 246 GVPLTTVQYLLGHKSLGMTAHYAQSA 271


>gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 349

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 94/299 (31%), Gaps = 41/299 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           L++ Y         LA ++   +            + +       + T HIR+       
Sbjct: 18  LVTRYLDWLRGSRKLAEHTLSGYARELRVLQAHAAQHAPGVALLALQTHHIRNFAARLHA 77

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
                +S  + L++ R  + WA R  + V++NP   V  P+      +  + E       
Sbjct: 78  AGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRAPRSGHALPKALSVEHAVALVA 137

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229
                 +E  + +  +E    SGLR S+  +  +++ + + +                  
Sbjct: 138 HPAGTDAEALRDQAVYELFYSSGLRLSELVQLDLRYAEADGYRSSGWLDLAGAEVTVTGK 197

Query: 230 -GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                TV +    +  L                P      F+    ++++     +  K 
Sbjct: 198 GSRRRTVPVGGRAIAALQAWLAVRDGLLRPGAAPEDAHALFLGPRGRRLSMRTVQLRLKQ 257

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +A +AGV      H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 258 QALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYT-ALDFQHLA 315


>gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 302

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 87/294 (29%), Gaps = 25/294 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L        +    +  +  ++     +     G       T + +R     ++      
Sbjct: 13  LRQRLIDDMNMRRFSRETHRNYLRDVGRFATFLGRSP-DTATAEDLRRFQIEQRDAGVPT 71

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    ++++R  F   + +  +       + R           +++++ +  +  +   
Sbjct: 72  PTMNSIVSALRFFFTQTIDRPDL----ARKLIRTPHPRNLPVVLSRDEVARLLNATTC-L 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + + A      +G+R ++     V  + +    I+ ++               L+ +   
Sbjct: 127 KHQAALSVAYGAGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLLILLREW 186

Query: 251 GKETFFINNDK------------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
            K                     + ++  Q        A  A + K    H +R   AT 
Sbjct: 187 WKIGHQQGVMHAQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLRHSFATH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS-SVVDSDDP 348
             + G     + A  G   ++    YTK A R +R  I    R+     D + P
Sbjct: 247 LLEDGVDIRVIQALLGHSHLNTTALYTKVATRTVRAVISPLDRLGIVTADQERP 300


>gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86]
          Length = 357

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMINTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   IK  KTG  + + L 
Sbjct: 186 VEIYHAAKPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 331

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 94/304 (30%), Gaps = 41/304 (13%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHI 119
            ++++Y          +  +   +       ++               D D R +    +
Sbjct: 11  EILNDYLIFLSIVKGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLL 70

Query: 120 RSG------------VESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR 166
           R               + R++   +  +  ++++  F +       +  NP   +E P  
Sbjct: 71  RQVTLQDIYQFEYYLQDDRQNRDRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGV 130

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K    +  + E+  +  S        +        L  G+R S+     VQ +      +
Sbjct: 131 KHSLPKFLSLEESLRMLSSVESDHPQRDYCILVLFLNCGIRLSELVGINVQDVDMYERRL 190

Query: 225 KT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAK 276
           +   K      + L D  +  +      ++      +        ++++  +     ++ 
Sbjct: 191 RILGKGNKERMIYLNDACLSAITEYLQTRKNPPTEPNALFLSRNNRRISRRRVQQIVESV 250

Query: 277 ATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL- 331
              A   G   S H +R  +AT+    G      L    G K++   E YT  +D  R  
Sbjct: 251 LKNADLGGKGLSTHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQD 310

Query: 332 GIKN 335
            I++
Sbjct: 311 AIEH 314


>gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
 gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 111/359 (30%), Gaps = 42/359 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           ++   R R     Y  +      G+          T   A + A           +S   
Sbjct: 3   YMASFRKRGNSWQYRIKYIDPATGKPKEKSKSGFRTKKEAQIEAAEVEKKFYLRQHSVIA 62

Query: 67  KPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
              T LK  ++E+ +       A  +  +   Y +  II   G++   ++T    +  + 
Sbjct: 63  NSETILKDWLTEWLEIYGAQ-CAERTLFNRFWYINNHIIPSLGNYKMNQLTRIEYQKFIN 121

Query: 125 SRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +       A + + ++  +F      AV  E V  N    +     + E I   ++++++
Sbjct: 122 TLVEKGY-ARKTIQTIHSIFCTAINKAVELEMVTHNKYQGISIKVEEEEKINYLSRDEVE 180

Query: 181 QFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            F     +          +L  +G+R  +      + +     +I   KT +        
Sbjct: 181 IFMDAAKKSPYHHYIIASILLRTGMRKGEMLALKWEDIDFENKTISITKTRSDNGVKKPK 240

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--------------QFSIWF 273
                 T+ + +  +  L    + ++   + +      +                 +   
Sbjct: 241 TKSSNRTIGIDNTLIADLKQYQLWQKKNKMKHGADYHKSEFLVRCPNGKEIGEYGVNKTI 300

Query: 274 KAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            +   KA     + S HG+R   A +  ++GA    +    G  T++     Y     +
Sbjct: 301 DSILKKANTNLPHISPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKK 359


>gi|206602617|gb|EDZ39098.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 346

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 102/334 (30%), Gaps = 31/334 (9%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  + +  G  ++    +       +   +     +  +++    + TTL   +
Sbjct: 6   KRGDLQWRVKIRRRGFPLQTRTFNTKAEAETWARLIETEMDRGSFVDRSEAENTTLSDAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFE--SYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTP 130
             Y        ++ + + S++     + +     G     +I    I    + R  K   
Sbjct: 66  DRY-----AREISPHKKGSYQELCRIENLKTHPLGKRFIAQIRGSDIALYRDERLKKVAA 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWS 187
           ++    L  +  LF+ A ++  +             K       R    E+ +  +S   
Sbjct: 121 ATVRLELAIISHLFEIARKEWGMESLSNPVRIVNLPKKSESRDRRLLYGEEEKLLESCDI 180

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL 245
            G          L +G+R  +      +H+     +  I   K G   +V L    +++L
Sbjct: 181 YGGDLPAIVRIALETGMRRGEIVGMTWEHVDLKKNTVLIPKTKNGEKRSVPLSKKAVEIL 240

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK-------ATKAGV--------NKSAHGVR 290
                          ++    T F                + G+        + + H +R
Sbjct: 241 KGLSRRIGGRVWEITEEHSVTTAFRRAISRARATYEKECQEKGIKQDPSFLVDLTFHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +   + G    ++ A  G KT+     YT 
Sbjct: 301 HEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334


>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 91/282 (32%), Gaps = 38/282 (13%)

Query: 88  AVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
           +  +  S+     +++  +    G+     I+   IR              S  + L++ 
Sbjct: 2   SPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLHAKGLNARSIARKLSAW 61

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-------- 192
           R  F W   Q  VA NP   ++ PKR     +    +D  +  S  S G           
Sbjct: 62  RGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADATMQLCN 121

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TIITVELPDG 240
           R  FE L  SGLR S+     +++ Q N ++                    + +  +   
Sbjct: 122 RAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSAPIGQP 181

Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
            +  L            +     F++    +++A    +  KA A   G+      H +R
Sbjct: 182 AIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              A+    +      +    G  ++   + YT   D  RL 
Sbjct: 242 HSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLA 282


>gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75]
 gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75]
          Length = 357

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 110/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y        +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   IK  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 14/221 (6%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   P+S    L+++R  F W V Q  +  NP   V  PK      +    +D+ +   
Sbjct: 1   RKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLD 60

Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
                    + R   E +  +GLR S+     ++HL  +        K      + +   
Sbjct: 61  IDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRN 120

Query: 241 FMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
            +  +      +  F  + +        ++++A      F     K G+  +   H +R 
Sbjct: 121 AVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRH 180

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             AT   ++      +    G   +   + YT   D   L 
Sbjct: 181 SFATHMLESSGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 220


>gi|82750103|ref|YP_415844.1| integrase [Staphylococcus aureus RF122]
 gi|11094395|gb|AAG29618.1| integrase-like protein [Staphylococcus aureus]
 gi|82655634|emb|CAI80030.1| probable integrase [Staphylococcus aureus RF122]
 gi|298693728|gb|ADI96950.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 378

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 60/385 (15%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F          G  +R                + L     +  ++N
Sbjct: 2   IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118
           +     TT K +   + +     ++  ++   ++          +    D   +KIT  +
Sbjct: 62  NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174
            +  +       S           +FK+AV  + +  NP    + P++K        + +
Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           + ++++QF +F  +       F  L ++G R  +        +     +I   KT     
Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWNDIDFTKQTISINKTCARGA 234

Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +        ++ L       +         + N
Sbjct: 235 NYKLVIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294

Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +               S      HG R    ++  +AG +  E+    G   +    
Sbjct: 295 KPLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354

Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344
             Y    ++ R   + + + +  ++
Sbjct: 355 DIYAHVTEKQR--DQVADKFAKYIN 377


>gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica
           CNB-440]
 gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440]
          Length = 325

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 40/304 (13%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115
              +       L+  +  Y         LA N+  S+       +      G  D   + 
Sbjct: 2   TAEAEPDPAPALRRAVRGYLDHLAVERGLAANTLASYRRDLAHYLDTLASIGVTDLASVA 61

Query: 116 TKHIRSGVESRKHTPSSAI--------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              + + +   +               + ++++R L ++A+R+     +P   V  P   
Sbjct: 62  PGQVEAHLARLRVGNEGRRPLAASSAARAVSAVRGLHRFALREGLTGADPSRDVRPPAPP 121

Query: 168 TEGIRPWTKEDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
               R    +D+ +                 G + R   EFL  +G R S++  A V  L
Sbjct: 122 RRLPRALPVDDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEAVGAAVDDL 181

Query: 218 QNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMN 265
             +  ++  +  G     V +    +  L    +                F+N+    ++
Sbjct: 182 DLDAGAVLLRGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFLNSRGGPLS 241

Query: 266 ATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   +  A +AG++       S H +R   AT   D GA    +    G  +V   
Sbjct: 242 RQGAWTILRNAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTT 301

Query: 320 ETYT 323
           + YT
Sbjct: 302 QVYT 305


>gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82]
          Length = 323

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRRIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 19  RKGRRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMR 76

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+ +       ++     D    K+ T  +   R     +   PS+  + + ++  +
Sbjct: 77  SGHNTHLK----LLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 132

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 133 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSESVQLLDALAENPDERLAVEILLST 192

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 193 GARWGEVEALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLDYPL- 251

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      K  A      ++ H +R   A+     G     L    G   +     Y
Sbjct: 252 ------VRDVIKTVAPDIPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 305

Query: 323 TKGA 326
              A
Sbjct: 306 AHLA 309


>gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 310

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 14/271 (5%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
               +  + ++         +  +   +E +         +  + +   K       S+ 
Sbjct: 8   KMDWREALQQFLFYKRAEGRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLYEYLSQP 67

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKS 184
             P++    LT ++  FKW V +  +  NP   + + K +   +   T+   +       
Sbjct: 68  IKPATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDK 127

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------II 233
               G +        L +G+R  ++    ++H       +                   +
Sbjct: 128 NTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVSRVLPILPV 187

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           T       + +       K   F     + +    ++   +  + K GV    + +R   
Sbjct: 188 TANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLGVKIRPYDLRHTF 247

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +    G     L  T G  T++  + Y  
Sbjct: 248 ALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|310779773|ref|YP_003968105.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309749096|gb|ADO83757.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 110/342 (32%), Gaps = 39/342 (11%)

Query: 15  RTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK    +YF    G +I+       T   A          +     S  +   +  
Sbjct: 5   KDKNGKWISRFYFTNYKGEKIQKFKRGFKTKREA------QEWEREFIAKSKFEITMSFN 58

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK---- 127
            L   Y +      L  N+ ++       +++    + +  KIT   IR           
Sbjct: 59  SLYEMYLEDLSHR-LRENTIMTKRHIIEKKVLPFFKEMEIGKITPVLIRKWQNKLIKYED 117

Query: 128 ------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQ 180
                 ++ +        +  +  +AV+   +  NPC       K++ + +  WT E+ +
Sbjct: 118 PKTNKLYSQTYIKTINNQLVAILNYAVKYHSLNENPCHKAGTIGKKQADEMDIWTVEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           +F       S   + F  L ++G+R  +     +  +     +I+  K+           
Sbjct: 178 KFAECLHHKSISFVGFNILFWTGIRIGELLALTINDIDLKNRTIRINKSYQRLNKEDVIT 237

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                     +++ +    +L            ++        +F    K  + KA V K
Sbjct: 238 DPKTAKGNRIIKITENLANILVNYIDTLYNVETSDRLIISTKYRFHHDMKLYSEKAKVKK 297

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H +R   A++    G +   +    G + ++    TY+ 
Sbjct: 298 IRVHDLRHSHASLLIHLGVSPLAIAKRLGHEKIETTLNTYSH 339


>gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 88/272 (32%), Gaps = 17/272 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKH 128
           T    + ++  S        N+  ++       +  +  F   ++T   I+        H
Sbjct: 3   TTAETVEQFLASLRARHAPANTIKAYSHDLRHFLAAAPTF-LVEVTAPLIQEFLQGDGHH 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++  +  +++   + WA+RQE V+ NP   ++   +  +  RP   E++ +     S 
Sbjct: 62  SVATRGRRYSTLCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEEVDKIFKAISP 121

Query: 189 G-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------II 233
              + R  F  L  +G+R  ++       +       K +  G                I
Sbjct: 122 SRLRDRTLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRVFGKGQRERTVMLTAAPQSI 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
            +         +    + +           ++ T     ++     AGV  + H +R   
Sbjct: 182 RLLRRHLKESHITSGSVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGVQATIHQLRHSR 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A+    AG     +    G + +     Y + 
Sbjct: 242 ASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEV 273


>gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 374

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 111/338 (32%), Gaps = 45/338 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +TK+R    ++ Y++    G R+    P    F+ AY +A+               K  T
Sbjct: 12  ITKKRADGSRVTYWYAWKGGPRLP-GSPGSPEFMAAYNAAVAERRAP---------KTDT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKIT----TKHIR 120
           L+ L   Y++S  + +L   ++  +  + D I+         G   +  +        I 
Sbjct: 62  LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +  +     P  A   +  +  +  W + +  +A+N    +++        + WT E+++
Sbjct: 122 AWRDQWADRPRKADYGIQVLSRVLSWGMDRGLLALNAAAGIKQLYTSNRADQIWTAEEIE 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
           ++ +         +      ++GLR  D       H+ +                     
Sbjct: 182 RYAAAAKSPEVGFIVRLAC-HTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTAVIPLL 240

Query: 225 --------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                   + +        EL D   K     P+   T   N   +  +           
Sbjct: 241 DDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEHQVVDA 300

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
              AG+NK  H  R   AT    AG TA E+    GW+
Sbjct: 301 KAAAGINKHLHDARGTFATRLRRAGLTAAEIADILGWE 338


>gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
 gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3]
          Length = 269

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 84/266 (31%), Gaps = 18/266 (6%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
               + + G  D+ ++    +R             SS    L+S+R  F + + +  ++ 
Sbjct: 1   MAHHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P++K    +    +++ Q      +     + R   E +  +GLR ++    
Sbjct: 61  NPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQK 263
            V+ +Q     ++          V       + +      +           F++    +
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTR 180

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++             K  V  + S H +R   AT   ++      +    G + +   + 
Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240

Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347
           YT   D   L     +        +D
Sbjct: 241 YTH-LDFQHLAQAYDQAHPRARKRND 265


>gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 94/293 (32%), Gaps = 8/293 (2%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +R     P       K L   Y +S  +  L   ++  ++ Y + II   GD D RKI T
Sbjct: 10  RRLKGREPLPTKRNFKTLRLSYVESDAFKHLKPRTKRDYQKYMEHIISIWGDLDPRKIET 69

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-T 175
            HI    ++       A   +    VL   A    ++        +      +    W  
Sbjct: 70  HHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHGNPAKGIPLFKQPGDGWEP 129

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             D  + +       +PRL +E  +  G R  D+ +    H+++  +     KT   + V
Sbjct: 130 WPDEVRAEFEELAPPRPRLVYELSIGLGQRIGDTHKIRWDHIKDGEYDFTQGKTDKPLLV 189

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291
            L +     L+       T     D +  +    +   +         ++     HG+RK
Sbjct: 190 PLTNRLAAYLSTVKKEGLTIVCGRDGRPADYRTVTEEMRKIKAAMKHPETQRYVTHGLRK 249

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISS 341
            +      AG     + A  G   V+  + Y    +  +  R       R   
Sbjct: 250 NATIELYQAGCDDEMVKAVTGHSGVEMLKKYGGRVRQRELARRAQDARNRAEQ 302


>gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 95/310 (30%), Gaps = 28/310 (9%)

Query: 46  AYMSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
           A +    G   +RE     +  +   T+   +    +     +    +   +  Y+ + +
Sbjct: 2   AVLKRRQGVRNRRETDGIVKSFRATKTVHEALGIVCELFETENYRERTINDYRKYWSEFM 61

Query: 104 RKSGDFDYRKIT-------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             +G      IT         +I + +  R  +P +    L  ++ +     ++  +  N
Sbjct: 62  EVAGIQPTDNITDITEDHLRSYISTMLNVRDLSPVTINIRLGGIKSILSRMTKRGLINEN 121

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212
           P   V + +   + I+  T   +++F     + +    +  +AF   L  GLR ++    
Sbjct: 122 PAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDTFPGFRDYVAFLIALKCGLRSNELEGL 181

Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDK 261
             + +  +   I       K      V + +   + L                 F+N   
Sbjct: 182 KPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAEELRQLLTEMTEYFGTFTHVFVNQYG 241

Query: 262 QKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +K+               A + K    S H +R   A      G+    L    G   + 
Sbjct: 242 EKIAKDHLRKRAAKYGEMADLKKECRPSLHSLRHTFAINYLRNGSDIRSLQKIMGHADLA 301

Query: 318 QAETYTKGAD 327
             E Y    D
Sbjct: 302 STEIYLDYVD 311


>gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 397

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 117/392 (29%), Gaps = 54/392 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-------------------YPHESTFI 44
            L+ P  +  ++  +G    Y     G  IR                        E    
Sbjct: 9   KLKEPVRIRFKQLANGNQSIYLDYYTGDVIRKENYVGGKRQYEFLKLYLIPEKTREDKAK 68

Query: 45  PAYMSALTGSTPKREYINSPRKK------PTTLKWLISEYRKSAHWGSL---AVNSRISF 95
                AL  +   +  +              +   +I  Y  +    S    ++N   + 
Sbjct: 69  NEATLALAKAIQSKRIVELQNDAHGFQNTNKSKANVID-YLMNMRSQSKERGSLNYEKTV 127

Query: 96  ESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH----------------TPSSAIQFLT 138
            +   ++    GD   +R I    + S V+  K                 + +S I +  
Sbjct: 128 GNTIRELKLFRGDYIAFRDIDKDFLNSFVDFLKQAKKASKFGLLKAGGVLSNNSVIAYYG 187

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +R     A ++  + +NP    +   +           T E++++      +    + A
Sbjct: 188 VLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIEELKRLIGTECKYEIMKQA 247

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254
           F F    GLR SD  +     LQ +   I+   K              + L   P   E 
Sbjct: 248 FLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALKWLPQQNEA 307

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
              +      +    +   +  A  AGV  + S H  R   AT+    GA  + +    G
Sbjct: 308 KGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLG 367

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            K +   + Y K  D+ +   +    I ++ D
Sbjct: 368 HKNIATTQIYAKIVDKKK--EEAISLIPNLTD 397


>gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
 gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910]
          Length = 429

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 87/299 (29%), Gaps = 15/299 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK 117
                 K+        +   K  H   + + + R ++    + II  SGD   + KI   
Sbjct: 120 KAELQEKQKEKFIDYCNRLLKKRHGSNNSSDSIRTNWRCLIEFIIEFSGDDLRFSKIDLS 179

Query: 118 HIRSGVESRKHTPS-----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                       P            SA  + +  + +   A    Y  I+    ++    
Sbjct: 180 FADDFKLYLLSAPYRGKKKGILSNNSAATYFSIFKAIVSQAFIDGYFIIDLSAKIKGIGE 239

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +       + E++    +   E  + + A  F   +GLR  D  R   + +      IK 
Sbjct: 240 QESFREHLSLEELNLLVNTPCENDELKRASLFSALTGLRHCDIKRLKWKEIDVQSNRIKI 299

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           Q               +                 +   +++  S   +     AG+ K  
Sbjct: 300 QFRQKKTKGVEYTPISEQAIHLCGTPRLPEQLVFENLQDSSWISRPLEKWVKSAGITKHI 359

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           + H  R   AT+    G   + +    G   V   + Y K  D ++     + ++   +
Sbjct: 360 TFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKVVDELKNRAAGAIKLDENI 418


>gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4]
 gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 106/323 (32%), Gaps = 27/323 (8%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +R    +  R            + + +     + EY+  P+    T+  +   + 
Sbjct: 14  RWEVRYRTPERKSTRRRGFTSKRQAQDFAATVEVEKMRGEYV-PPKLGHITMGEVGPAWL 72

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQF 136
           +      L  ++  S E+ +   +  + G      +    +   +     T  +   I+ 
Sbjct: 73  ERKE-SDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTKGATVVIRA 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              +  +   AV+ + +A NP   VE   RK    R +   D     +      + R   
Sbjct: 132 YGVLAGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALA--DSAGEKRALV 189

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGF 241
             L Y GLR  ++    V+HL                N    + T K+    +V +P   
Sbjct: 190 LVLAYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVGTPKSHKSRSVPIPGFV 249

Query: 242 MKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           ++ LA            F   +      +  F+ WF     K+GV + + H +R   A++
Sbjct: 250 VEELARQCEGKGRDDLVFPGRDGDYLKRSVSFTGWFTKAVEKSGVPRLTPHDLRHTCASL 309

Query: 297 SADAGATAHELMATYGWKTVDQA 319
           S  AGA    L    G  +    
Sbjct: 310 SIAAGANVKSLQRMLGHASAAMT 332


>gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY]
 gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY]
          Length = 323

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 82/295 (27%), Gaps = 40/295 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS- 132
           +Y +       LA  +   +     ++   +   D    ++T+ HIR  V        S 
Sbjct: 16  QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 L+  R  + WA RQ  V  NP   V  PK      +    ++  +       G+
Sbjct: 76  RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135

Query: 191 QPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTI 232
            P L        E L   GLR  +     V          +                   
Sbjct: 136 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHVFGKGSKR 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWFKAKATK 279
            +V +       L      +   F             I     ++ A    +  + ++  
Sbjct: 196 RSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPALFIGRRGARLTAQSVWLRLRQRSQV 255

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 256 AGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 309


>gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
 gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein
           [Plesiocystis pacifica SIR-1]
          Length = 346

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 85/296 (28%), Gaps = 43/296 (14%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
           +  ++ +         L+ N+  ++    +  I             R +  + +R+ +  
Sbjct: 2   REALASFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLAE 61

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+  + L+++R   ++  R+ ++A N    + RPK   +       ED+ +  
Sbjct: 62  LHGKRAASTVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMI 121

Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSIKTQ 227
                    G + R   E L  +GLR S++    +  L+                    +
Sbjct: 122 DGEQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKGNK 181

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFS 270
                +  +  +     L               +                    +     
Sbjct: 182 DRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRVAR 241

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +   +G       HG+R   AT    +G     + +  G  ++   + YT 
Sbjct: 242 EVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297


>gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein
           [Methanocorpusculum labreanum Z]
 gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z]
          Length = 320

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDY-------- 111
              T    I  Y  +    + A N+  ++                  G            
Sbjct: 20  PKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNF 79

Query: 112 ---RKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               +I T     G         R+ +P+S  Q+ +++   + + + Q+    NP   V+
Sbjct: 80  GMGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVD 139

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           RPK K   ++     ++  F +   E  +  L    +  +G+R S+ C    +H+     
Sbjct: 140 RPKIKDRELKYLKHNEVVAFINSI-ENPRNALLIRTIYATGMRISEICGLLAEHIDFEEE 198

Query: 223 SIKTQKTG-TIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATK 279
           +I+ +  G  I  V      +  +     GK+    F   +   ++       F      
Sbjct: 199 TIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNGNAISPRTVQHIFNIY--- 255

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332
           A    + H +R   A+           +    G  ++   E Y     D  R  
Sbjct: 256 APPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKA 309


>gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2]
 gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2]
          Length = 329

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 79/320 (24%), Gaps = 36/320 (11%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQI 102
                +A + +   R        +   L      +         +A  +  ++     Q 
Sbjct: 2   ANKKAAAPSLTRAARHDFAPADAE---LASCARAWLAHLGGERRVAELTLAAYSRDLRQF 58

Query: 103 IR----KSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQE 151
           +       G          ++   +R+ + +R+       S ++ L  +R    +  R  
Sbjct: 59  LSFAAIHFGAPPSLAMVSTLSPADLRAFMAARRAAGVGSRSLLRQLAGLRSFTHYLQRSG 118

Query: 152 YVAINPCLSVERPKRKTEGIRPWTK---EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                   +V  PK      +P T      +   +S   E     +        GL    
Sbjct: 119 VQQSAALGAVRAPKAPRRLPKPLTAAAACAVTSVESRAGEDRPTWILARDAAVLGLLYGA 178

Query: 209 SCRAG--------VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
             R             +        T K G I    +     + +               
Sbjct: 179 GLRISEALSILRADAPIGERDTLRITGKGGKIREAPVIAPVRQAVEAYLKLCPYHLPPER 238

Query: 261 K-------QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311
                     ++     +  +      G+    + H +R   AT     G     +    
Sbjct: 239 HLFVGAKGGPLSPRIIQLAVERMRGALGLPDSATPHALRHSFATHLLSRGGDLRSIQELL 298

Query: 312 GWKTVDQAETYTKGADRIRL 331
           G  ++   + YT   D  RL
Sbjct: 299 GHASLSTTQIYT-AVDSARL 317


>gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 391

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 109/355 (30%), Gaps = 38/355 (10%)

Query: 10  FVTKERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            VT+ +T  G  +    +RK  G +              + +              P   
Sbjct: 3   NVTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDG 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR 126
              +  L  ++ K   W      +R++    +     +   D     IT   +++ +   
Sbjct: 63  KRRVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDI 121

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE----D 178
             +    S  +   +M  + + AVR + +  NPC +VE P   R+       T       
Sbjct: 122 IASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAF 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FS 223
             +       G++ R     L + GLR  ++     + L                   + 
Sbjct: 182 ADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKA 277
             T K      V +P   M+ L      +E               K +A + + W+    
Sbjct: 242 EGTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHAL 301

Query: 278 TKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            + G  K    + H +R  +A+++  AGA    L    G K      + Y    D
Sbjct: 302 VRLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 356


>gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 401

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 90/306 (29%), Gaps = 46/306 (15%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---------------------YR 112
           I EY +        + N+  S+        R                           + 
Sbjct: 23  IVEYVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPEDSEMKDIDPKGLDTAFWA 82

Query: 113 KITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRK 167
            +T + I            +  SS  + L S+   + + V Q   +  +P  ++  PK+ 
Sbjct: 83  SVTKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNRLGADPTAAIHPPKQD 142

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +  T E   +        S    +        L  G+R ++     +  +      
Sbjct: 143 KVLPKYLTAEQSMELLESTQTQSDFPERDYCMVTLFLNCGMRLAELVGMNLDDIDLENRQ 202

Query: 224 IK-TQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271
           I+   K      V L D  M+ L +    + T                 K++++  +   
Sbjct: 203 IRLFGKGHKERMVYLNDACMEALRLYLGKRNTMEGLLPQEKAVFITRRRKERISNRRVEQ 262

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-R 328
                   AG+   S H +R  +AT+    G      L    G   V   + YT   + +
Sbjct: 263 LVTGAMKAAGLKGFSTHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQ 322

Query: 329 IRLGIK 334
           +R  I+
Sbjct: 323 VRAAIE 328


>gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 327

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 87/277 (31%), Gaps = 14/277 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +       +  + + L+  +  +      +  S   +++  + ++ +    D ++I T  
Sbjct: 37  QVTQDKEHEENSEQNLVELFLSAKRIEGCSEKSLKYYKTMIETMLFQL-QKDVKQIVTDD 95

Query: 119 IR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           IR        S+  +  +       +   F W   ++Y+  +P   + + K  T     +
Sbjct: 96  IRTYLTEYQNSKHSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTSVKETY 155

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
           + E ++  +   +E  +     +    +G+R  +      + +  N              
Sbjct: 156 SDEALELMRDSCTE-LRDLAMIDMFASTGMRVGEMVLLNREDINFNERECVVFGKGDKER 214

Query: 234 TVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
            V         L      ++           +   +M      +  +    + G+     
Sbjct: 215 IVYFDARTKIHLQNYLQSRKDNNPALFVSLQSPHNRMKIGGIEVRLRNLGNRLGLVKVHP 274

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           H  R+  AT++ D G    ++    G + +D    Y 
Sbjct: 275 HKFRRTLATVAIDKGMPIEQVQQLLGHRRIDTTLQYA 311


>gi|191638912|ref|YP_001988078.1| Integrase homolog [Lactobacillus casei BL23]
 gi|190713214|emb|CAQ67220.1| Integrase homolog [Lactobacillus casei BL23]
 gi|327382965|gb|AEA54441.1| hypothetical protein LC2W_2109 [Lactobacillus casei LC2W]
 gi|327386149|gb|AEA57623.1| hypothetical protein LCBD_2127 [Lactobacillus casei BD-II]
          Length = 397

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 114/366 (31%), Gaps = 38/366 (10%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           +  ++G   +          G +I+      +T   A  +         E + + R +  
Sbjct: 9   KTRKNGTFYFRAYLGVDPKTGEKIQKQVGGFTTRRDARKAYKEMVGGSVEKVVAERDQQH 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
              K    E+    +   +   +  S  S      +        KI    I+        
Sbjct: 69  IQFKQFWEEFFLPWYKNQVKPQTYDSRRSSLKHF-KMFEHMYMDKIKPVDIQKWQNQMTC 127

Query: 129 TPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S +   L    +  +F+ A+   ++  NP  +V   K+    +  WTKE+ +     +
Sbjct: 128 QVSKSYTRLVQCMLSRVFQRAIVLGFMNENPTKTVGNVKKVKNQVDFWTKEEFEAVIKTF 187

Query: 187 SEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
                 +    F L+    +G+R  ++       +     +++  KT  + +        
Sbjct: 188 YIEDFYQHFCFFTLWFLFMTGMRIGEATALQWDDIDFEEGTVRINKTLWLRSYTNYSFST 247

Query: 240 --------------GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280
                           ++LL+          K  F ++ +             K  A  A
Sbjct: 248 PKTKASNRTIPLDAKTLELLSDWKKAQALKCKTDFVLSFNGVPTRRDLVMRIIKRHAALA 307

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
           GV++   H +R   A++    G     +    G + +     TY        +  + ++R
Sbjct: 308 GVHRIRVHALRHSHASLLISLGENPLVIKERLGHEDIQTTLGTYGHLYPN--MNFEAAKR 365

Query: 339 ISSVVD 344
           ++ +V+
Sbjct: 366 LNGLVE 371


>gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2]
 gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 112/367 (30%), Gaps = 43/367 (11%)

Query: 21  IIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
             Y      G+     RL               LT     +      +    +L   ++ 
Sbjct: 10  TKYRVTFELGKDLNGKRLRDYATVNSEAEAKKLLTEFEHNQNRNLLVQSNAMSLIEFLNH 69

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSS 132
           +  +    +    +   +++     I    G  + +K+ + HI+      ++ +  +P++
Sbjct: 70  WMDNYVKYNCEETTTYGYKNILYKHISHFFGGIELQKLQSGHIQQYYKHLMDEKNLSPNT 129

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +  + +R    + ++Q+ V  N   +VE PKRK    + +T ++         + ++ 
Sbjct: 130 VHKHHSLIRKALDYGLKQQLVYRNVADAVELPKRKRYEGKSYT-KEQLIELLKKVKNTKL 188

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232
            +     +Y GLR  +      +++     ++   +  T                     
Sbjct: 189 EIPIYLAVYLGLRREEIIGLKWKYVDFESRTLHIFEVRTSAGKAIITKAPKTEKSRRSLH 248

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                     +     +    +L          + +++ +       +  FK    K  +
Sbjct: 249 INDDLYSLLKMHKVKQEELKNMLGSAYDNAGYVYSHDNGKPYRVNSVTEQFKTFLEKQQL 308

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            K   H +R   A++  + G     +    G   +    + YT   D+          +S
Sbjct: 309 PKIRLHDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYTHRFDKTH--KNTINAMS 366

Query: 341 SVVDSDD 347
             +  D 
Sbjct: 367 QALKGDF 373


>gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 335

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 13/260 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
            + Y        L+  +  +++ +  ++           I T  +R  +    +   PS+
Sbjct: 62  ATLYLACKKLEGLSPKTLNNYKLFLIKLNMYF-TKPCSTIGTMDLRMFLALLGKGKQPST 120

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
              ++T ++  F W   +EY+  NP   +++ K      + +  E++++ +       + 
Sbjct: 121 VNGYITCLKNFFGWLQNEEYIIKNPAFRLKQTKVPKVVRQGYKAENLEKLREACKTE-RE 179

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           +  FE L  +  R S+     +  +  +        K      V         L      
Sbjct: 180 KALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIVYFSTRAKLALENYIKD 239

Query: 252 KETFFINNDKQKMNA------TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
           +     +    K                K    ++GV +   AH  R+  AT   + G  
Sbjct: 240 RSDNNNSLFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLLNQGMR 299

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G  T    + Y 
Sbjct: 300 IEGVQGILGHTTPTTTQIYA 319


>gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 346

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 106/310 (34%), Gaps = 25/310 (8%)

Query: 19  GKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           G    YY+    G R++        F   +  A           +       TL ++IS 
Sbjct: 18  GSKRDYYYAWKGGPRLK-EKYGTPAFAEEFRQA---------TRDRSAPDADTLAYVISL 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSA 133
           Y++      L  ++R ++  Y   I  + GD D R +    +        ++   TP +A
Sbjct: 68  YKR-MELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAA 126

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               + ++ +  + V  E +  NPC +  R    +   R          +       Q  
Sbjct: 127 DIAWSILQRIMAFGVHMEKLKRNPCTNAGRLAE-SGTRREIIWTPPDLSRFRAVASRQLA 185

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247
            A    +++G R  D  +            +K  KTG  + + +     K+L        
Sbjct: 186 DALLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENE 245

Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
              +   T   N   +   ++ F   +   A KAG+   + H +R    T++  AGA+  
Sbjct: 246 ARKVQSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIE 305

Query: 306 ELMATYGWKT 315
           ++    G  T
Sbjct: 306 DIAKASGHTT 315


>gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL001PA1]
 gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL082PA2]
 gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL060PA1]
 gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL050PA2]
 gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes
           HL103PA1]
          Length = 300

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I    +R+ +   +   +
Sbjct: 7   VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDDILGRIGISQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  V+ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAG--VNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G K++   + YT  + +R+R   + + 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAH 297


>gi|210617017|ref|ZP_03291352.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787]
 gi|210149540|gb|EEA80549.1| hypothetical protein CLONEX_03574 [Clostridium nexile DSM 1787]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 95/342 (27%), Gaps = 34/342 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M     +P +   +  + G      YY      ++ +                       
Sbjct: 1   MKGDRHMPTY---KDEKTGTWFVKCYYTDYMGNKKQKKKRGFARQKDAKEW-------EY 50

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
               +      TT   + +++ +          +  S+      I+    D    +I  K
Sbjct: 51  SFLSSLQYDSDTTFGSVSNDFIEENTPRRRK-TTIRSYNIALKHILPTFKDIPLSEINEK 109

Query: 118 HIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            I        +T  S     +  T  R ++K+  ++  +  NP   +E+  + +     +
Sbjct: 110 MIILWQNELLNTELSEVYINKIDTMFRTIYKYGAKRCGLRSNPFDGIEKIGKASNKSLHF 169

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
              +       + E    R+AF+ L Y G+R  +        +  +   +   K+     
Sbjct: 170 WTHEQYNAFIPYIEQPTTRMAFQVLYYCGIRIGELFALTAGDIDLDEQIMHITKSLQRME 229

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                           + LP+  +K L                 +++        K  + 
Sbjct: 230 RQDVITPPKTRKGIRDITLPNFLVKELENYMSMIYDCNGETRLFEISKQSLYYPMKKYSE 289

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A V +   H +R     +  + G +   +    G   +   
Sbjct: 290 IARVPRIRIHDIRHSHVALLIEKGVSPLAIAERLGHDDIKIT 331


>gi|254453490|ref|ZP_05066927.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
 gi|198267896|gb|EDY92166.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 238]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 113/343 (32%), Gaps = 18/343 (5%)

Query: 9   PFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
             +     +  K  Y+ +   G  +RI +      +   A  +AL       R    + +
Sbjct: 38  KGLVLFVGKRSKTWYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAAQ 97

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                L+  +  Y         +  +++   +     ++        +I+          
Sbjct: 98  IGAPILEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMSVRRHHD 155

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+A   L S R ++  A R   +   P +++E  + K +G R        +    
Sbjct: 156 MAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENLKHWRKTID 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+ +E LL++GLR ++      + +  +   +   K G    + +     ++L
Sbjct: 215 DLPNPIHRVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEIL 274

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
           A        + I       +    +           +  + H  R+  AT++ +AG    
Sbjct: 275 APLRPLSSDWVI------PSPKSETGHITRPVR---LKYNPHMHRRTFATVAMEAGVLEE 325

Query: 306 ELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345
            +        +    + Y +   D +R  ++     + + +D+
Sbjct: 326 IVGRLLNHTPLSITGQRYVRPSLDALRPSMEIACAELLNRIDN 368


>gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043]
 gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC
 gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043]
          Length = 298

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 89/298 (29%), Gaps = 26/298 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESR 126
             +  +  S    + +  +  ++        + +  SG  D+  +    +R  +    +R
Sbjct: 3   AAVERFLHSLSGHA-SPATLDAYRRDLTALARFLEASGIDDWAALDVAQVRRFMGAERTR 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P S  +   ++       VR   +  NP    + P++     RP   + + +F    
Sbjct: 62  GLAPRSLARRRAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLDTP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +G+    + +   E     GLR ++     V  L      +  +       + +     
Sbjct: 122 HDGTPLAVRDQAMLELFYSCGLRLAELTALDVTDLDARRLRVVGKGN-KPRQMPIGRRAQ 180

Query: 243 KLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
             LA             +   F+     ++            A + G+  +   H +R  
Sbjct: 181 AALADWYRLRGQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHS 240

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDD 347
            A+   ++      +    G   +   + YT+  D   L     +   R       DD
Sbjct: 241 FASHLLESSQDLRAVQELLGHANLSTTQVYTR-LDWQHLADAYDQAHPRARRRAPPDD 297


>gi|308271817|emb|CBX28425.1| hypothetical protein N47_G37490 [uncultured Desulfobacterium sp.]
          Length = 392

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 98/356 (27%), Gaps = 30/356 (8%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  + G++ Y+  +R   GR++R      +      A      G   +   ++   +   
Sbjct: 29  KAKKSGRVRYWVSYRLPGGRQVRRIEGGGYSLKDTLAAEGKTKGLKVENRILDIKPEAKM 88

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T   L   Y        LA       +   +   +  GD    ++    + +    RK  
Sbjct: 89  TFNQLTKWYLDLERVKMLARYPI--LKINLNSFNQVFGDTIVNQLKPADLENYQAKRKAQ 146

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQ 181
             +     Q +   R +   A   + V+ +     +R K+          R  + E+  +
Sbjct: 147 GQADAYVDQQIAMARAMINKAFDNDIVSGDTIKVFKRVKKLLKGSSNTRDRVLSAEEFDK 206

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVEL 237
             +     S  +       Y G+R  +        +      I+      K      V +
Sbjct: 207 LMNA--LPSHAKAIVATGYYGGMRKGEVVNLTWDKVDMKGRVIRLGANDTKDREARQVPI 264

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGV 289
            D    +L   P       +   K K          +     AG+            H  
Sbjct: 265 CDALYDILEEIPRAINDNHVFLFKGKP-IKNLRTALRKACRVAGIPYGRGTKDGFVFHDT 323

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVD 344
           R    T    +G     +M   G  T +    Y T  A   R  +         VD
Sbjct: 324 RHCFNTNMRKSGVPESVIMKITGHSTREMFLRYDTVDATDTRKAVDQMEGFLKSVD 379


>gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J139]
 gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA3]
 gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes
           HL110PA4]
          Length = 300

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I    +R+ +   +   +
Sbjct: 7   VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDNILGRIGISQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  V+ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATK--AGVNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G K++   + YT  + +R+R   + + 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAH 297


>gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 337

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|254498110|ref|ZP_05110867.1| phage related integrase [Legionella drancourtii LLAP12]
 gi|254352676|gb|EET11454.1| phage related integrase [Legionella drancourtii LLAP12]
          Length = 410

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 103/344 (29%), Gaps = 34/344 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           G  +R+ L      T   A   A      +           + +    TL+ ++++Y K+
Sbjct: 57  GKVKRVTLGKYGNLTVEEARKQAKSLLGSVARGDDPIAEKKTKKVHAMTLQQVLNDYLKT 116

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSSAIQFLTS 139
                L   +   ++    +++    D     IT + I  R     + ++ + A   +  
Sbjct: 117 R--KDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAKRHTKHGQANSKARANNAMRV 174

Query: 140 MRVLFKWAVRQE---------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R +F +A+ +                Y++          K+                  
Sbjct: 175 LRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDRKQTVIKPHQLADWYKAVIIL 234

Query: 185 FWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             ++  +  L +       L++G+R  ++     + +     +I         I      
Sbjct: 235 VETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLKSKTITLQDTKNREIHTLPMS 294

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATIS 297
            F+  L       +T       +      +            +GV  + H +R+  ATI+
Sbjct: 295 DFVYELMERRSRNKTSEFVFPAESKTGYIYEPKKAVNRVVELSGVPFTLHDLRRTFATIA 354

Query: 298 ADAGATAHELMATYGWK-TVDQAETYT-KGADRIRLGIKNSRRI 339
                 A+ L      K   D    Y  K  +R+R  ++     
Sbjct: 355 DSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQQVANF 398


>gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
 gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4]
          Length = 345

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 29/296 (9%)

Query: 59  EYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             +    +    L+ L++    +       + + ++  ++ +  +Q+             
Sbjct: 23  AELALTIEADAALRELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGKCLTWTR 82

Query: 116 ------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                  +HI   ++  K   +S  Q L+++R  + W + ++   INP    +  +    
Sbjct: 83  CDKRQLAQHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRP 142

Query: 170 GI--------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                          +++           + +  FE L  SGLR  +     +  +    
Sbjct: 143 LPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIADVDLAD 202

Query: 222 FSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSI 271
             ++          V L       +      +  +    D           +++      
Sbjct: 203 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKLGTRLSTRAVQQ 262

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             K  AT+AG+ ++   H +R   A+           +    G   +   + YT  
Sbjct: 263 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHV 318


>gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641]
 gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641]
          Length = 334

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 92/325 (28%), Gaps = 31/325 (9%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK I   Y     G+R+R           A+          + ++   +     L  LI 
Sbjct: 9   GKWICECYPAGREGKRVR-KQFATKGEALAFERFTMEQVDNKPWLGEKQDTRL-LSELIE 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------------HIRSGVE 124
            + ++     L+     S       + R  GD      T K             I  G  
Sbjct: 67  IWHRAHGVT-LSDG--KSRHQVLLNMCRDLGDPRAVDFTAKAFSQYREQRLNGEILRGTR 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++  TP +    L  +R +F    R  E+   NP   V + +   + +   TKE + +  
Sbjct: 124 TKGVTPRTLNIELAYLRAMFNELSRLGEWRQDNPLRDVRQYRTDEQEMAFLTKEQIGKLL 183

Query: 184 SFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 S P LA      L +G R S++       +     +    K     ++ + +  
Sbjct: 184 EECENSSVPELATVVRLCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEEL 243

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
              L                       F    K    K    + +H +R   A+     G
Sbjct: 244 FNSLPKKNGRLF---------PSCYAAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKG 294

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                L    G   +     Y   A
Sbjct: 295 GNILVLQRILGHTDIKMTMRYAHFA 319


>gi|297570135|ref|YP_003691479.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926050|gb|ADH86860.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 332

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 90/317 (28%), Gaps = 14/317 (4%)

Query: 20  KIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +  Y  R   + HG R      +      A+   +  +  +  YI     +  TL+ ++ 
Sbjct: 7   RGQYQIRAKVRKHGYRTITKTFNNVADAKAWARQVEAAMDRGAYIPVAAAEKNTLRMVLE 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
            YRK      LA   R  F    +++    GD     +    +    + R      P + 
Sbjct: 67  RYRKEICPR-LARAGRDEFAR-LNRLTEALGDLSLAALQPAEVARYRDQRLKAGAAPQTV 124

Query: 134 IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              L  +  + K  V    + +        V +P   +   R     + ++  +      
Sbjct: 125 KHDLGLLNRVLKACVMDWGIPLPHGIVTAQVRKPSPPSGRDRRLESREEEKLLAAAQASK 184

Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
              +       L +  R ++      +H+  +          T                 
Sbjct: 185 SREIEKIITIALETAARRAEIASMRWEHINLDKRIWFIPAAATKTKTARTVPLSTGAMAV 244

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
             G             +    +  F     +A + +   H +R  + +   + G    E+
Sbjct: 245 LQGLPRRIDGQVWSFSHPDGITQAFDRICKRAEIEDLRFHDLRHEATSRLFEKGLNMMEV 304

Query: 308 MATYGWKTVDQAETYTK 324
            A  G K +   + YT 
Sbjct: 305 AAITGHKDLKMLKRYTH 321


>gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4]
 gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4]
          Length = 362

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 91/325 (28%), Gaps = 60/325 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------FDYRKITTKHI 119
            I +Y  S      +  +   +   +                        D+ +I    I
Sbjct: 38  FIQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSEDPSFQPAAVTLKDFLQIEKAAI 97

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +        + P +  + +++++ LF + V++     NP L VERPK         T
Sbjct: 98  EHYITYLSLEVENEPRTINRKISALQSLFDYLVKKGETTTNPVLGVERPKVGKRDPVFLT 157

Query: 176 KEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             + Q       + S               +       L+ SGLR S+     ++     
Sbjct: 158 INEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYLLISSGLRISELANVKMKDFDKE 217

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAM----------------TPIGKETFFINNDKQK 263
                   K     ++ L    + +L                         F      ++
Sbjct: 218 ENILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSRPKQSEDHLFIGYDFQSQEYTKQ 277

Query: 264 MNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +  +      + +  +A            +AH +R   AT     G     + +  G ++
Sbjct: 278 VTVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSFATALVAKGVDVLTVQSLLGHES 337

Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340
           V   + Y    D  R   +   R+S
Sbjct: 338 VATTQVYAHVQDDAR--KEAITRLS 360


>gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 87/280 (31%), Gaps = 23/280 (8%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVE 124
           L +++ +   +    + +   ++ +   + I   G+     I            IR+ + 
Sbjct: 16  LATQWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLA 75

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ 180
            R+ +    SS  + ++ +R   ++       AI      +  P+  +        ++  
Sbjct: 76  YRRQSGLANSSVAREISGIRAFLRFIGLDPIPAIKGARVKKGIPRPLSPEDAVALAKEAS 135

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +  S     ++       L  SGLR S++     + L          K   I  V L + 
Sbjct: 136 EEASEQWIEARDLALLLLLYGSGLRISEALNLTCEILPLQTTLRVVGKRSKIRIVPLLEK 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN--KSAHGVRK 291
             + +          F  +            +A       +      G++   + H +R 
Sbjct: 196 VKRAMETYVRLCPYAFSGSQPFFRGAKGGVLSADVLRRTVRKARYHLGLDNKATPHALRH 255

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             A+     GA    L    G  ++   + YT   D  RL
Sbjct: 256 SFASHLLGRGADLRSLQELLGHASLSSTQIYT-AVDAARL 294


>gi|210610936|ref|ZP_03288661.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
 gi|210152236|gb|EEA83243.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 105/356 (29%), Gaps = 45/356 (12%)

Query: 16  TRHGKII----YYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           TR GK+     YY      RR +             +         +       +    +
Sbjct: 4   TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEW--------ERNFLQQQQKNLDIS 55

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +  +  Y        L  ++ I+    FD ++          +I T  IR+        
Sbjct: 56  FENFVEIYFADMENR-LRESTIINKRYVFDLKVTPYFRHKKMCEIQTSDIRAWQNELIKK 114

Query: 130 PS------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
                   S    L ++   F +AVR   +  NPC       +   + +  WTK++ ++F
Sbjct: 115 GYAPTYLKSINNQLAAL---FNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEF 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                   + R+AF  L ++G+R  +      + +      I+  K+             
Sbjct: 172 LPSMENKPEARMAFLILYWTGMRIGELLALTYEDIDLEKRCIRINKSYQRINGKDMITPP 231

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   + +P    + L                 +   +             GV +  
Sbjct: 232 KTPKSNRKITIPLFLAEELKEYCSMLYGITDKERMFRFTKSFMEHEMVRGIKATGVRRIR 291

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            H +R   A++  + G     +    G + ++    TY+      +   + + ++ 
Sbjct: 292 LHDLRHSHASLLVEMGFQPLAIAERLGHEKIETTLNTYSHLYPNKQ--AELAEKLE 345


>gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 373

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/357 (8%), Positives = 97/357 (27%), Gaps = 33/357 (9%)

Query: 17  RHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK       ++  G  +               Y + L     +     + +       
Sbjct: 6   KRGKTYRATVLWYEDGVRKFKSKSGFKTKREAQIYANELENLKARNFISQNSKTP---FP 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
                + ++    S++  +++++++ F+ + +  G     ++  +  R  +    + H  
Sbjct: 63  EYFWSWFETYKESSVSERTKLTYKNTFNVLKKHLGGIPIEEMDRRLYRKFIAEFGKDHAK 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKEDMQQFKS 184
           S+  +F +      K A+    +  +     +    + +  +        TK+       
Sbjct: 123 STVSKFNSLYHACVKDAMYDGDMTKDFIAGTDIVYNRKKTRKIDYLNIEETKKLTNYLTD 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------SIKTQKTGTI 232
             +     +      + +G R  +      + +  +                 T+   + 
Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFHTIDINKSWNETTKKFQPTKNESSK 242

Query: 233 ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
             + +    +  L        +  FIN       ++  +   +    + G++K     H 
Sbjct: 243 RIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHFHS 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNSRRISSVV 343
           +R              + +    G   +      Y+   D            I   +
Sbjct: 303 LRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKL 359


>gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 408

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 106/382 (27%), Gaps = 55/382 (14%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGS 54
           M      P  + K   + G   Y F+K        G++        ++   A ++     
Sbjct: 1   MATKPN-P--IKKYTKKDGSTAYMFKKYLGIDPVTGKQRETTRRGFTSLKEAKLAYARLD 57

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRK 113
               E     R      K +  ++    +   +  ++  +    F   I+   G ++ + 
Sbjct: 58  IDVAENGIKQRSSNRAYKEVFEDWFNLVYKTKVKESTYWNTRIIFDKHILPALGSYNIKA 117

Query: 114 ITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           IT    +    +  K  P+   +++    ++FK+A     +  NP   +  P        
Sbjct: 118 ITVTACQKQANAWCKDNPNRYDRYINYAGMIFKYAESIGEIPSNPMQKIILPTPAESIEG 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNNIF- 222
             +       +       +                  Y+GLR  ++     + +      
Sbjct: 178 DESDVINFCNRQELLSLLKELKENYPFKRFVFFSLLAYTGLRKGEALALTWRDIDFKHQT 237

Query: 223 ----------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--- 263
                             K +    + T+ +      LL      ++    +        
Sbjct: 238 LTVNKTLAVGKNGTSLIQKPKTKAGVRTISIDSDTADLLKEWRKHQKKHIDSLAMMPSIE 297

Query: 264 ------------MNATQFSIWFKA-KATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
                       MN      W          +++ + HG R   A++  +AGA+  ++ A
Sbjct: 298 QLVFAKDEDNGLMNPRTPQTWLDTLYRKNKSLHQITPHGFRHTHASLLFEAGASMKQVQA 357

Query: 310 TYGWKTVDQAE-TYTKGADRIR 330
             G   +      YT      +
Sbjct: 358 RLGHSNIKTTMNVYTHVTKEGK 379


>gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14]
 gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 85/279 (30%), Gaps = 38/279 (13%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVL 143
            N+  ++    + +           +T      +     ++ R    SS  + L++MR L
Sbjct: 27  DNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSSSVARRLSAMRHL 86

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------- 190
           F++ + +   + +P   +  PKR     +  +  D+ +  +                   
Sbjct: 87  FRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDRLLACAKAAMETPDASPARRLRA 146

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     E L  +GLR S+     +   + +   I  +        V L +   + +A  
Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKERLVPLNEASRQAMADY 206

Query: 249 ---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
                             K  F    +   +    F+   K  A  AG+     S H +R
Sbjct: 207 LAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A+     GA    +    G   +   + YT   +  
Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305


>gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 292

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 22/279 (7%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQII----RKSGDF----DYRKITTKHIRSGVE 124
           LI++Y +        + ++  ++ +  +++     R  G         +IT   +R+ + 
Sbjct: 4   LIADYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLA 63

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            R+    T +S  + L+++R   ++A  +      P      P+ +         ED+ +
Sbjct: 64  FRRGEGLTAASTARELSAVRTFLQFAGIEPPALKGPRRKRSMPRPQAPADIIALAEDVAE 123

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +     ++       L  +GLR  ++       L          K      V L    
Sbjct: 124 DAAEPWIAARDWAVLLLLYGAGLRIGEALALPAAILPLGETLRVLGKRDKTRIVPLLPQV 183

Query: 242 MKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
            + +              +          ++        +    + G+    + H +R  
Sbjct: 184 REAIERYAAQMPFAVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGARTTPHALRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            AT     GA   +L    G  ++   + YT   D  RL
Sbjct: 244 FATHLLGRGADLRQLQELLGHASLSSTQIYT-AVDAARL 281


>gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88]
 gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88]
          Length = 328

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 46/299 (15%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG------------------------DFDYRK 113
           Y  +      + N+  +++       R                                 
Sbjct: 22  YLTTVKER--SPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDDIDISDIDDEFIRKITL 79

Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGI 171
                  + +++ +   S A  + + +++  FK+   +  +   NP + +E PK K    
Sbjct: 80  TDLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNP 139

Query: 172 RPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T E+ ++  +       ++        L  GLR S+ C   +  ++ +       K 
Sbjct: 140 TYLTLEESKRLLASIDGTNKARDYCIITLFLNCGLRLSELCSIDISKIKEDTLY-VIGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279
               T+ L    +K +      +             FI+ +  ++N     I  K    K
Sbjct: 199 NKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNNTRINKRTVEIMLKKYLKK 258

Query: 280 AGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI-RLGI 333
           A ++    + H +R  +AT+    G      L    G + +   + YT   +   R  +
Sbjct: 259 ANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAV 317


>gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
 gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC]
          Length = 284

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 86/266 (32%), Gaps = 12/266 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR--- 126
           + LI E+ +       A  + + +E    +             ++    +   +E +   
Sbjct: 7   EKLIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSN 66

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKS 184
               S+    L++ RV   WAV + Y++       + PK        R   +        
Sbjct: 67  CLKVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHY 126

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
             +     R AF  L+ SG R +++     + +    ++    I+  K G+   + + D 
Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDA 186

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
               +      +          +++      +    A   G+N   H +R   A +  + 
Sbjct: 187 DAAKIVWKYRTEVEVDNRPLF-RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLLTEK 245

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G K++     Y + A
Sbjct: 246 GVPLTTVQYLLGHKSLGMTAHYAQSA 271


>gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 90/300 (30%), Gaps = 43/300 (14%)

Query: 67  KPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIR 120
           K      L   +          + ++  ++           G     D D R +   HIR
Sbjct: 2   KRRNFHELAESFLAMMRDERGASEHTLRAYSREVRGFADFLGELLGEDADIRSVEHTHIR 61

Query: 121 SGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + +        +   A + L ++R  FKW  +  +V  NP   V  PK      R    E
Sbjct: 62  AYLAVLYDKGLTKASAARALAAVRSWFKWLAKSGFVEANPASLVSTPKLPKHLPRVPGME 121

Query: 178 DMQQFKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           ++ +  +  S G+             + R+ FE L   G+R S+     ++ +  +  +I
Sbjct: 122 ELNRVLNSMSAGTKGEDGEEAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAI 181

Query: 225 KTQKT-GTIITVELPDGFMKLLAMTPIGKE------------------TFFINNDKQKMN 265
           +          V L D     +      ++                           ++ 
Sbjct: 182 RVFGKGKKERLVPLGDEAAAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLT 241

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K  A   G+  +   H +R    T   + GA    +    G + +   + YT
Sbjct: 242 TRSVGRIVKRIALSRGLAADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYT 301


>gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 327

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 14/288 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A+  +             P      +  +  +      +  +   +    + +I   G
Sbjct: 26  RDAMAETLEGATITYDSGSIPADEADAVEAFITAKRIEGCSEKTLSYYRKTIEALIAGVG 85

Query: 108 DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
               R+ITT  +R         R+ +  +       +   F W   ++++  +P   + +
Sbjct: 86  -KAVRQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHK 144

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K        +T E ++  +   +   +     + L  SG+R  +      + +  N   
Sbjct: 145 VKTAKVVKDTYTDEVLELMRDNCTTA-RDLAMIDLLASSGMRVGELVTLNREDINFNERE 203

Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAK 276
                       V         L     G+                ++         +  
Sbjct: 204 CVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVSLKAPFDRLMIGGVETRLREL 263

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +  + K   H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 264 GKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|154251504|ref|YP_001412328.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154155454|gb|ABS62671.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 99/336 (29%), Gaps = 30/336 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72
           ++   G      R+    R             A+   +     + E  +   RKKPTT  
Sbjct: 5   KKLPSGNWRVQVRRKG--RYIAETFRRHKEAEAWALDMERRIDQGEVPSSRTRKKPTTFG 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
            LI  +  +      +   R S     D +  K G      +  + +    + R      
Sbjct: 63  DLIDLHLAALQEVGRSP--RRSKAFTLDALKAKLGKVRMADLNRERLIRFGKERLKEGAG 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA---------INPCLSVERPKRKTEGIRPWTKEDMQ 180
           P +    L+ ++ +   A     +A               +    R     R  T ++++
Sbjct: 121 PVTVGMDLSYIKTIITHAAAVHGIAVSPEAVDLARTALKHLGVVGRSRSRDRRPTADELK 180

Query: 181 QFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +  +++    +  +       F + + +R  + CR     +  +  ++  +        +
Sbjct: 181 RLIAYFDANPRQLIPLARIIRFAVATAMRQDEICRIRWGDIDADTRTVLIRDRKDPRETD 240

Query: 237 LPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVN-KSAH 287
             D  + LLA T                        NA      F+       +     H
Sbjct: 241 GNDQKVPLLAATGFDAWAILREQKTAVAKGDRIFPYNARSVGTAFRRACRDLKIENLHFH 300

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   A+   +AG T  ++    G +     + YT
Sbjct: 301 DLRHEGASRLFEAGFTIEQVALVTGHRDWKMLKRYT 336


>gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
          Length = 225

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 19/208 (9%)

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192
           + S+R  +++ +++E +  NP   V   K+     R + + +MQ              + 
Sbjct: 2   IASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRN 61

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA----- 246
           R   E L  SG+R S+     V  +  +   +    K        L       L      
Sbjct: 62  RALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDALQEYFRE 121

Query: 247 -------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
                        +  F+N+  + +  T           K+ ++     H +R   AT  
Sbjct: 122 GRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPHMLRHTFATHL 181

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
            + GA    +    G   +   + Y   
Sbjct: 182 LNNGADLRTVQELLGHANLSTTQIYAHV 209


>gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 397

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 106/348 (30%), Gaps = 26/348 (7%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS-EY 78
              Y     HG + +              + L     +  +    +K+  TL      +Y
Sbjct: 48  NKTYKVTVKHGGKKKTKLVDNLDLAREIETKLKHDITRGTFHLQTQKQAPTLDAFWDKDY 107

Query: 79  RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS---------GVESR 126
                    +      +E   +    +  K G      IT   I               +
Sbjct: 108 LPWIRSNKKS-----WYEDAINYQTHLAPKLGQKRLDAITQLDIERLLSGLRKGTSKRGK 162

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  ++    +  +  +F  A R  +Y   NPC  + +P+   +     T +++ +    
Sbjct: 163 PYAAATIKHQIVLLTRMFNVAARWGKYTGPNPCKLIAKPRLNNQKTGFLTDDELTRLLDV 222

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                         FLL++GLR  +  R   Q +  +  ++  +         LP     
Sbjct: 223 LEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDRQTLTVRDPKGGRDTVLPLSEKA 282

Query: 244 L--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
           +  L   P   ET F+   +       F   +      A +      H +R   A+    
Sbjct: 283 IDALNSLPREHETPFVFYGRNGAQRADFRHPWYRIKQAAALPEGFRLHDLRHHFASALVS 342

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSD 346
           AG   + + A    K+    + Y   +D+  R  +K S  +S    SD
Sbjct: 343 AGTNLYTVQALLTHKSAAMTQRYAHLSDQALRDAVKLSDDLSKKATSD 390


>gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 325

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 38/303 (12%)

Query: 73  WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
               ++    A   + + ++  ++ +    ++  +   G      +T   IRS +  ++ 
Sbjct: 20  EAADDFANHLAQVQNRSTHTVRAYVADVISLLDHAVRAGARTPADLTLAQIRSWLARQRT 79

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           T    S+  +   + R    WA R   + ++    +  P+   E       +        
Sbjct: 80  TGAARSTLARRSAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLET 139

Query: 186 WSEGSQ------------------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                +                   +L  E L  +G+R S++C   V  +      ++  
Sbjct: 140 AHAAPRGQPTDDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVF 199

Query: 228 KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAK 276
             G    +V       + L           +               ++N T         
Sbjct: 200 GKGGRERSVPYGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRY 259

Query: 277 ATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
            T AG+ ++  HG+R  +AT   + GA    +    G  ++   + YT    +R+R   +
Sbjct: 260 TTAAGLPRTSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYR 319

Query: 335 NSR 337
            + 
Sbjct: 320 QAH 322


>gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A]
 gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A]
          Length = 357

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y +      +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 349


>gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3
           str. Alaska E43]
 gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 329

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 101/295 (34%), Gaps = 48/295 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------------------YRKIT 115
           Y ++    + + N+  +++       R    +                        + I 
Sbjct: 23  YLETI--KNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKSIQ 80

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
            + + + +    + R ++  +  + + +++  FK+   + + +  NP   +E PK     
Sbjct: 81  LRDLYAFMSFIEKYRNNSTYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQ 140

Query: 171 IRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               T +      S   + +    +        L  G+R S+ C   ++ ++N+I +I  
Sbjct: 141 PVYLTLDQSIHLLSSLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILAIIG 200

Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAK 276
           +      TV L +  +K +                K+  F+++  + +N     I  K  
Sbjct: 201 KGN-KERTVYLNEACLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKH 259

Query: 277 ATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327
              AG+     + H +R  +AT+    G      L    G + +   + YT   +
Sbjct: 260 VKNAGLTDAKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314


>gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4]
 gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 111/324 (34%), Gaps = 29/324 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+ + + +R     +     A ++A  G+ P+       +     L   ++  RK+    
Sbjct: 56  RRQNAQTLRKAEDIQRERTEALLNAKVGTVPE------SKSSDMLLSDWMTIVRKNHEHR 109

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQ 135
                     ++    +++   D     +  +     ++  +           TP +A  
Sbjct: 110 E--ARDLNGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           + T++R     AVR+  +  NP   +E     K         T E++++  +      Q 
Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQV 227

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMT 248
           R A+ F  + GLR SD  +   + +  +           KT   + + L    +K L   
Sbjct: 228 RQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPER 287

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                   +       +    S   K  A KAGV K  + H  R   A +    GA  + 
Sbjct: 288 NGCTPDGLVFGGLPNTSNLCVS--LKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G ++V   + Y K  D+ +
Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKK 369


>gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 60/357 (16%)

Query: 27  KGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR--------------EYINSPRKKPTTL 71
            G  +R+R   P        A+                              P+  P TL
Sbjct: 10  DGRTKRVRKVSPVQTKRAAQAFERETRAELMAGLFDEENNHGPNGSGRRKAKPQAVP-TL 68

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---- 126
                E+       +       S  S     ++   GD    +I  + I      +    
Sbjct: 69  AEFAPEFMAYQATLN-KATELASKRSSLKNHLLPVFGDLRLDQIDARAIDRYKMRKLSPE 127

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                            P +    L  +    + A +   +   P   +E  +   +   
Sbjct: 128 HAATVASTRRRAGEGLKPKTINNHLMVLSRALRVAQKWGVLDRVP--EIELLRVTKQPFD 185

Query: 173 PWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
               E+ +++ +   E      +       +GLR  +      +H++    +++ + +  
Sbjct: 186 FLDFEEAERYLAAAREHYPDWHVFVLVAARTGLRVGELLALQWKHVRLAGRTLRVELSYT 245

Query: 231 -----------TIITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSI 271
                          V L     + L +                F N D ++ +      
Sbjct: 246 RAGGVSSPKSGKAREVPLTWDVARALEVHREVLGAKARARDALVFPNADGERGSLRSVGH 305

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    A  A + +   H +R   A+ +   G     +    G  +++    Y   A+
Sbjct: 306 FVSRIAKAAKLRHVHPHMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLAE 362


>gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
 gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1]
 gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC)
           [Methylobacterium extorquens AM1]
          Length = 365

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 90/293 (30%), Gaps = 32/293 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122
           L+  +  +R++ A    +A N+  ++E    Q +                 +  + +R+ 
Sbjct: 23  LRAAMRGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTPTIAGLIALKPRDLRAF 82

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175
           + +R+       S ++ L  +R   ++  R+ + ++    +V  PK +    RP      
Sbjct: 83  MAARRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAA 142

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228
                 E            ++       L  SGLR S++    A    +        T K
Sbjct: 143 LAMTAPETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGK 202

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAG 281
            G +  V +     + +A                        ++         A     G
Sbjct: 203 GGKVRAVPVLPAVAEAVAAYLSLCPHPLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALG 262

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    + H +R   AT           +    G  ++   + YTK  D  RL 
Sbjct: 263 LPESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTK-VDAARLM 314


>gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
 gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium
           limosum KIST612]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 47/358 (13%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +++ ++G I Y++R  H         +  T                  + S +      
Sbjct: 6   YRKKIKNGTIYYFYRLRHKNLRTPRDLYGRTVTELEDKIRRLKNELDRGVTSEKAY---F 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT 129
              + ++    H  +    ++  ++  F++ +      +   + +T   I+         
Sbjct: 63  GDYMEKWLNDVHLNNKKQATKTKYKGLFERYVLPYPVANIQLKDLTALDIQEHYSKLVSD 122

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---------ERPKRKTEGIRPWTKEDMQ 180
             S    L ++ V+    +R  +      +           ++ + K+         DM+
Sbjct: 123 GIS-KPTLKTLSVVINPCIRYAFTQGKILIDFSRSIVLPEAKKKQEKSRRASQALSLDME 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233
                   G++  +     L SGLR  +        +      I   KT           
Sbjct: 182 NALIKACAGTKWEVFILTDLNSGLRRGEIMALTWDDIDLEKGIIDVNKTYDQRNKDQPIG 241

Query: 234 -----------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                       +    LL+         F N+    M AT   
Sbjct: 242 PPKTENSIRQVPIPRFLAEKLKQHKVEQNKRRLLLSNKYKNLNLVFPNDFGNYMAATTVG 301

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
                 A + G+   + H  R   AT   +       + +  G   +      YT  +
Sbjct: 302 RALIDFAKEIGLESLNLHDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHVS 359


>gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08]
 gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08]
          Length = 280

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 85/265 (32%), Gaps = 18/265 (6%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137
           +A   +L  ++  ++       +  +G   ++++T        +        P +   + 
Sbjct: 12  AAQKKNLKESTTKAYCHALSPFLNATG-KPWQELTVADADDYLTTKRRMGILPETYNHYY 70

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++R ++K  ++  +                      ++E++       +   + +  F 
Sbjct: 71  GALRFMYKRVLKLNWDEDEIPRMKRD----RSLPTVLSREEVNAILDVTT-NLKYKAIFA 125

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
            +   GLR S++       +  +     I+  K        L D  + +L       +  
Sbjct: 126 VMYSGGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQCQRP 185

Query: 256 FINNDKQKMNA-----TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                  +        +  +   +  + +AG+ K  ++H  R   A+   + G     + 
Sbjct: 186 RNILFPSQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDGCDIKYIQ 245

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
           A  G       E Y   +++  LGI
Sbjct: 246 ALLGHLDPKSTEIYLHVSNKTLLGI 270


>gi|319936293|ref|ZP_08010711.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
 gi|319808669|gb|EFW05213.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
          Length = 365

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 107/347 (30%), Gaps = 42/347 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            V K++  +       R  + +    R+             +         +  +     
Sbjct: 2   GVYKDKKTN-TWYVSKRYINWKGENCRLFKRNFTTKREAQNF--------ERSYFEKLQG 52

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T    I  Y        L +N+ +  ++  + +I     DF   +IT  HI     
Sbjct: 53  NLNMTFDDFIEVYFDDKK-QRLKLNTFLMKQNVINTKIRPYFKDFKMCEITPNHILKWQN 111

Query: 125 SR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPW 174
                      K+T S+       +  +F  AV+   +  NP   V          +  W
Sbjct: 112 DMMKQHHKKGEKYTSSTLKTMHAQLSAIFNHAVKYYRLDKNPARIVGTMGSEDEIEMLFW 171

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           T E+ ++F     +     +AFE L ++G+R  +     ++ +  +   ++  K+     
Sbjct: 172 TTEEYKKFAFEIMDNPISYMAFEMLYWTGIREGELLALTLEDIDFDKCKLRINKSYQRLQ 231

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                           V++PD  +  +     G       +    +N +      K    
Sbjct: 232 GEDVITTPKTSKSNRVVDIPDFLVDEVKDYVAGLPGLKKTDRMFPINKSFLYREMKRGCK 291

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A V K   H +R    ++  + G +A  +    G +++     Y  
Sbjct: 292 AADVKKIRVHDLRHSHVSLLIEKGFSALAIADRVGHESIHITYKYAH 338


>gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
 gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316]
          Length = 292

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
             LI  +          + N+  S+    +++       G      IT   +   + S  
Sbjct: 2   DQLIDAFCLYLETVKKASANTISSYRRDLNRMASHMSNRGITSIADITDDRLHGYISSMQ 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
                 SS I+ ++S+R  F++ +    +  NP  ++  PK      R  T  +++    
Sbjct: 62  EEHCAGSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEIEALLS 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------T 231
           Q     + G + +   E +  +GLR ++     ++++  ++  I+  +            
Sbjct: 122 QTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRLGENRVIPYGKKAKE 181

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            +   L     ++L+      +  F+N     M+        K    +AG++   + + +
Sbjct: 182 ALNEYLLFARDEILSDNSASLQKVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADITPYSL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           R        ++GA  + +    G   +     Y K   + +   + +R
Sbjct: 242 RHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGKNKDPYEWAR 289


>gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110]
 gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 83/298 (27%), Gaps = 40/298 (13%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT- 129
            + +Y +       LA  +   +  +   +   +        ++ T HIR  +       
Sbjct: 12  WVDKYLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQTAHIRRWMAQLHGAG 71

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------QQ 181
             P      L+  R  ++W   +  V  NP   V  PK      +    +D         
Sbjct: 72  REPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAELYD 131

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTII 233
            ++     ++     E L   GLR S+      +                    K     
Sbjct: 132 PEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGKGSKRR 191

Query: 234 TVELPDGFMKLLAMTPIGKETF-----------------FINNDKQKMNATQFSIWFKAK 276
            V +     + L      +                    FI+    +M++       + +
Sbjct: 192 IVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWKLLRER 251

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           + KAG+      H +R   A+    + +    +    G   +   + YT+  D   L 
Sbjct: 252 SLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTR-LDFQHLA 308


>gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a]
 gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a]
          Length = 338

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 97/339 (28%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y    +G+R+R           A+ S       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             LI ++       SL   +    +        I    GD    ++T        E+R  
Sbjct: 62  SELIEQWY------SLYGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K     +  
Sbjct: 116 GEVRNEDGTFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAF 175

Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            T E++++     ++   S   L  +  L +G R S++       +     +    K   
Sbjct: 176 LTPEEIKRLLDACADSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +     + L        T                  F+    +AG++       H
Sbjct: 236 NRTVPISKDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGIDLPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFA 321


>gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 327

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 89/294 (30%), Gaps = 14/294 (4%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             +      L  +   +E + S   +  T + L+  +  +      +  S + + +    
Sbjct: 20  AQLQKLEQILEHALLDKEIVESYSVQEDTSEDLLENFLSAKRIEGCSEKSLVYYRNTIQA 79

Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  K  +   R+I T  +R       + +  +  +           F W   ++Y+  +P
Sbjct: 80  MRDKV-EKPVREIETNDLREYLTGYQKEKNSSKVTIDNIRRIFSSFFSWLEDEDYIIKSP 138

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + R K  T     ++ E+++  +   SE  +     + L  +G+R  +      + +
Sbjct: 139 VRRIHRVKSATTIKETYSDENLETMRDSCSE-LRDLALIDILASTGMRIGELVHLNRKDI 197

Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270
                             V         L      ++               +M      
Sbjct: 198 NFEERECVVFGKGSKERMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDRMKIGGIE 257

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +      G+ K   H  R+  AT++ D G    +L    G K +D    Y 
Sbjct: 258 ARLRGIGRNLGIEKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 311


>gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68]
          Length = 330

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 101/317 (31%), Gaps = 21/317 (6%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++ + G+     R     G+RIR       +    +   +  +   + +   P  +   L
Sbjct: 4   KQLKDGRYQVDVRPQGAEGKRIR-KIFTLKSKAQEFEKYVLQNFHDKPWQAKPADQRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             L+  +               S+     ++IR+ GD     +T K +      +     
Sbjct: 62  SELLDAWW---MLDGRNQAYGDSYRVRLGKVIREMGDPRASHMTRKFMLEYRSEKLQAGL 118

Query: 130 -PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            PSS  + L  +  +F   +  + +   NP   + + K +   +   + ++++Q      
Sbjct: 119 MPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEMAFLSDDEIEQLLER-- 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R      L +G R  ++     +H+  N  +    K G   +V + D  + L+  
Sbjct: 177 LEGDARRVAILCLSTGARWREASELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G        +        F    +         ++ H +R   AT     G     L
Sbjct: 237 RRTGLLYQVDYLE--------FREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTL 288

Query: 308 MATYGWKTVDQAETYTK 324
               G  T+ Q  TY  
Sbjct: 289 QRILGHATIQQTMTYAH 305


>gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 23/309 (7%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
                           K E +   +     L   ++  RK+              ++   
Sbjct: 65  KAEDIQRERTEALLKAKVEAVPENKSSDMLLSDWLAIVRKNHEHRG--ARDLNGIDNARK 122

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQ 150
            +++   D   R +  +     ++  +           +P +A  + T++R     AVR+
Sbjct: 123 NLLKFRADARLRDLDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRE 182

Query: 151 EYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           + +  NP   +E     K         T E++++  +        R A+ F  + GLR S
Sbjct: 183 KLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEHVRQAYLFSCFCGLRIS 242

Query: 208 DSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           D  +   + +  +           KT   + + L    +K L           +      
Sbjct: 243 DIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDLVFGGLP- 301

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            NA    I  K  A KAGV K  + H  R   A +    GA  + +    G ++V   + 
Sbjct: 302 -NAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQV 360

Query: 322 YTKGADRIR 330
           Y K  D+ +
Sbjct: 361 YAKIVDKKK 369


>gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 32/285 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHT 129
              Y +     SL  N+    E    +      D         ++   HI    +    T
Sbjct: 215 ARRYIEQVTL-SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTT 273

Query: 130 PS----------SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTK 176
           P+          S    L ++   F      +Y            + P       R    
Sbjct: 274 PTPRTGKPLNRGSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDD 333

Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230
               +        + P  RL  E L  +G+R S+        +          I   K  
Sbjct: 334 GAATKLLRAARADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMH 393

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV-N 283
               + L     +LL           I        + + + + + +      A  AG+ +
Sbjct: 394 NDRYIPLHPQLKELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGH 453

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AH +R   AT + + G +   + A  G KT+     Y + ADR
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498


>gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
 gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Clostridium botulinum B str. Eklund 17B]
          Length = 386

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 109/378 (28%), Gaps = 55/378 (14%)

Query: 15  RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R +     Y Y+   +G + ++      T   A          +   +  P+     LK 
Sbjct: 6   RKKGNVWYYRYYEYVNGVKKQIERKGGITKKEALQKLNEEIYRQNNGLLKPK--EILLKD 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
            +  + +     + + N+ I ++      I  + G      +   +I   +   K T   
Sbjct: 64  YLKIWLEDYVKPNNSENTYIKYKGTVNKYINPQLGLIKLCDLKVINIEQFLSKLKKTKLS 123

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            ++  +    +      A++ + +  NPC  V+ PKR        T E++    +     
Sbjct: 124 LTTIQKHYLVLNGALNKAIKLQMLNDNPCKYVDTPKRSKYKASILTFEELHSIYTNLNTK 183

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKT 229
             E    +L  +  + +GLR  + C      +                 N+      +  
Sbjct: 184 IYEDYIMKLGMDLTIETGLRRGEMCGLQWSDIDFDNKILNVNTALIRVNNDYKISNLKTD 243

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF------------------------FINNDKQKMN 265
            +   + L +  +K+L      +                           F   + + + 
Sbjct: 244 SSYRKLPLSNEIIKILKSHKSKQNINKIKYGNNFVYSNKFDGDSTEYNLIFTWENGRYII 303

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            + F    K       + K    H +R  +ATI      +   +    G   +    + Y
Sbjct: 304 PSNFLQRLKRLCKYCKIEKNIRWHDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIY 363

Query: 323 TKGADRI-RLGIKNSRRI 339
               + + R        +
Sbjct: 364 AHVTEEMNREATDVISNV 381


>gi|170723132|ref|YP_001750820.1| integrase family protein [Pseudomonas putida W619]
 gi|169761135|gb|ACA74451.1| integrase family protein [Pseudomonas putida W619]
          Length = 340

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 108/330 (32%), Gaps = 14/330 (4%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            PS+R    +     R        R+     +             + + + G   +  ++
Sbjct: 7   PPSVRYHSAMAYYEKRGDAWRAQIRRKGYPTLS-ATFDTKAEAQRWAAEIEGDMSRARFV 65

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +    + TTL   +  Y   +   S    ++            K        I +  + +
Sbjct: 66  DMREAESTTLDEALDRYL--SEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAA 123

Query: 122 GVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176
             +       + ++    L  +  LF  A ++  +    NPC ++  PK   E  R  T 
Sbjct: 124 YRDAELKEGKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTP 183

Query: 177 EDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            ++   +K+     +Q  +  E  + + +R S+       H++  +  ++  K G    V
Sbjct: 184 AELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAV 243

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
            L    + LL   P         N          S +F      AG+     H +R  + 
Sbjct: 244 PLSSRAIALLEGLPTPIGGGRYFNLAL----NTISNYFPRACAAAGIEGLRLHDLRHEAT 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + G T  E+ +  G KT+   + YT 
Sbjct: 300 SRFFERGFTMMEVASITGHKTLAMLKRYTH 329


>gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614]
 gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614]
 gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           L     +     +L+  ++ S+     +  R  G     ++  + +R+       T  S 
Sbjct: 8   LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRYFGRSP-DRLGLEDVRAFQVHLVATGISW 66

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q + ++R  +   + Q  +           +   +     + +++ +F        
Sbjct: 67  PALNQTVCALRFFYGVTLGQAEIPERIA----YARAPRKLPEVLSADEVVRFLEAV-PSL 121

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           + R A      +GLR S+     V  + +      I+  K G    V L    + +L   
Sbjct: 122 KTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTY 181

Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                       ++     ++ T      ++    AG++K  + H +R   AT   + G 
Sbjct: 182 WRLARPPDWLFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGT 241

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339
               +    G   +     YTK + R+ R       R+
Sbjct: 242 DIRIIQVLLGHNNLSSTARYTKVSSRLIRRTQSPLDRL 279


>gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 100/360 (27%), Gaps = 55/360 (15%)

Query: 25  FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRK 80
           F+   GR  R+              Y   L  +     Y    + +   TL    + +  
Sbjct: 5   FQHADGREERVTKVSPVQTRRGAEQYERELRNALLNGTYGKEKKSEGRVTLAEFSARFLT 64

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131
            +   +   +S I+ +      I+   G+    +I    I       +   S        
Sbjct: 65  YSENNN-KPSSAITKQQILRDHILPFFGEMALVRIGPAEIEDFKALMRKKKSASRARKED 123

Query: 132 --------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                               +    L+++  L   A  Q+ +         +   K    
Sbjct: 124 ATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEQKVIKQ---APRVKLFGKLPKP 180

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +       +  +   +   + R      L +GLR  +        L  +   +  ++T  
Sbjct: 181 KFDFLTFEEAGRLIDAAEPEWRTLMLVALKTGLRQGELIGLQWADLDLSRGMVTVRRTIW 240

Query: 232 I-----------ITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATK 279
                        TV+LP   ++ L           F  +D Q + A + +   +     
Sbjct: 241 RGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQPLRRALKM 300

Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
           A + +       H +R   A+  A  G     +    G  T++  E Y   + D  R  +
Sbjct: 301 ADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360


>gi|307822732|ref|ZP_07652963.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736336|gb|EFO07182.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 340

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 87/317 (27%), Gaps = 17/317 (5%)

Query: 16  TRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R       F    GRRI+                 L     + +Y+ +  K     K  
Sbjct: 5   KRKDTWWIQFTAPDGRRIQQTAGTQLKDEAQELHDRLKADAWRVKYLGA--KPRYFWKDA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           +  +            S  + + +   + +   D    +I    I     +R     + S
Sbjct: 63  VIRWLTEQGHKK----SIETDKVHLRWLDKHLSDVYLDEINKLKIDLIKNARLADGVSNS 118

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L+ +R +     + ++  I+              +R  T+++  +      E   
Sbjct: 119 TVNRLLSILRAILN-RAKDDWEWIDSVPGFRFLPEPAGRVRWITRDESVRLIEELPE--H 175

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250
            +    F L +GLR S+        +                            L +   
Sbjct: 176 LKFMVRFALATGLRESNVTHLQWSQIDIQRRCAWVLADQAKAGKAIAVPLNDDALDVIAS 235

Query: 251 GKETFFINNDKQKMN--ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                 +     K N      +  F+    +AG++    H +R   A+    +G   H L
Sbjct: 236 QVGKHDVRVFTYKGNVVNDGNTKSFRKALKRAGIDDFRWHDLRHTWASWHVQSGTPLHVL 295

Query: 308 MATYGWKTVDQAETYTK 324
               GW  +     Y  
Sbjct: 296 KELGGWADISMVLRYAH 312


>gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
 gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567]
          Length = 320

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 31/237 (13%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R         P+S  + + ++R    +      +  +P  +V+ PK      +  + E M
Sbjct: 64  RDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQM 123

Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           Q+  +        G + R   EFL  +G R S+     +  +                  
Sbjct: 124 QKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVPG 183

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFS 270
                        V L     + L    +     F ++              ++      
Sbjct: 184 YVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAW 243

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  K  A +AG+  + S H +R   AT     GA    +    G  ++   + YTK 
Sbjct: 244 LILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKV 300


>gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 608

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 82/285 (28%), Gaps = 32/285 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHT 129
              Y +     SL  N+    E    +      D         ++   HI    +    T
Sbjct: 215 ARRYIEQVTL-SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTT 273

Query: 130 PS----------SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTK 176
           P+          S    L ++   F      +Y            + P       R    
Sbjct: 274 PTPRTGKPLNRVSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDD 333

Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230
               +        + P  RL  E L  +G+R S+        +          I   K  
Sbjct: 334 GAATKLLRAARADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMH 393

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGV-N 283
               + L     +LL           I        + + + + + +      A  AG+ +
Sbjct: 394 NDRYIPLHPQLKELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGH 453

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AH +R   AT + + G +   + A  G KT+     Y + ADR
Sbjct: 454 VTAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498


>gi|160934339|ref|ZP_02081726.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753]
 gi|156867012|gb|EDO60384.1| hypothetical protein CLOLEP_03210 [Clostridium leptum DSM 753]
          Length = 363

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 106/362 (29%), Gaps = 43/362 (11%)

Query: 18  HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G       Y      R+ +             +         +   + +      + + 
Sbjct: 9   NGTWYVMARYVNWKGERKQKCKRGFTTKKEAQEW--------ERMFQLQNSSDLDMSFEA 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126
               Y +      L  N+ ++ E     +I+   G     +I+TK I +           
Sbjct: 61  FTELYIRDVKNR-LKENTWLTKEHIIRTKILPFFGKLKISEISTKEIITWQNEMLAYRDE 119

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182
           K  P S          +  +F  AVR   +  NP   V     +       WTKE+ ++F
Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGSEEHREMLFWTKEEYKKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AFE L + G+R  +           +  ++   K+             
Sbjct: 180 AFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFDFDKETVTINKSYQRLHGEDVITTP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+++P    + +             +    +  +         A  AGV +  
Sbjct: 240 KTKKSNRTIKMPHFLCEEMQEYLSMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R    ++  D G +A  +    G ++++    Y       +   + + R+  +   
Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYQYAHLFPSKQ--TEMAERLDDLGKG 357

Query: 346 DD 347
           D 
Sbjct: 358 DF 359


>gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 377

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 101/350 (28%), Gaps = 35/350 (10%)

Query: 12  TKERTRHGK--IIYYFR----KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKRE--Y 60
            K R + G+    +          GR+  +              Y   L       E   
Sbjct: 6   RKWRDKQGRQHERWMVHIEHTWPDGRKQTIRKVSPVQTKRGAEQYERELRKQLVSGEILK 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
             + R+K  TLK    E+       +         +S     ++   G      I  + I
Sbjct: 66  GGAKRRKVPTLKEFSEEFLAYQATMN-KPGVIDWKKSILRTHLLPALGRRRLDAIDERVI 124

Query: 120 RSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +        +  P +    L  +  + + A R + ++  P + + +    +     + +
Sbjct: 125 DAFKVSQSQLELAPKTVNDHLKLLGRMLRVAKRWKLISEVPEIVLPKLAAPSFDFLDFKE 184

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNI 221
             +    ++  E  G    +     + +GLR  +      +                ++ 
Sbjct: 185 AKLFLEGAWAYELYGGMWPIYMVVAMRTGLRLGEMKSLRWREDLDLDRGRVRVQRSHSDK 244

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKAT 278
               + K G    V L    ++ L           + +     + +   Q +   KA A 
Sbjct: 245 HGFASPKNGKSRDVPLTLDALEALRSWRGQARGELVFSQLSSGEPLRHRQPNNAVKAIAK 304

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             G+ +   H +R   A+ +   G    ++    G  ++     Y   AD
Sbjct: 305 SVGLRQIHTHVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHLAD 354


>gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 328

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 102/322 (31%), Gaps = 24/322 (7%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR    +       +   +  +   ++++  P      L
Sbjct: 4   KKLDDGRYEVDVRPQGAEGKRIR-RKFNTKGEAQIFERHILVNYHNKDWVEKP-ADRRKL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR-- 126
             L+S +     +   + +     +   + I   + + G     ++T K I     +R  
Sbjct: 62  TELLSLWW---IYHGKSHDRGEIEKGRLNAIIVKLAEVGVIRADQLTKKAILDYRVNRLN 118

Query: 127 -KHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               PSS  +    +  +F K     EY + +P   V++ K +   +   T  +++    
Sbjct: 119 EGLKPSSVNRHHAILSGMFTKLIEADEYHSQHPFKDVKQLKEQQAEMAFLTAGEIEDLLQ 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   R A    L +G R  +      +H+ NN+ +    K G   T+         
Sbjct: 179 L--LDGDNRKAVLVCLATGGRWGEVANLKCEHIINNMLTFMKTKNGKRRTIP-------- 228

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           ++   + +            N        +A        ++ H  R   AT     G   
Sbjct: 229 ISPALMTQIKHAKTGFVCHPNYDAVRNTLRAMKPDLPDGQALHVFRHTFATHFMMNGGNI 288

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G  T+ Q   Y   A
Sbjct: 289 ITLQRILGHSTIQQTMVYAHFA 310


>gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS]
 gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 111/335 (33%), Gaps = 18/335 (5%)

Query: 16  TRHGKIIYYFRK--GHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R     ++ +     G+RI+      +      Y   +  +    E +N  +K   T +
Sbjct: 5   KRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLN--KKPQRTWQ 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
                +            +R         +    G+    +I+   I    E   ++ + 
Sbjct: 63  EATVRWLNETSDKR---TTREDITK-LRWLHPILGNLTLDQISLPVIDMIRERKLKEASK 118

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  ++L  +R +     + E+  I+    ++  K      R  T E   +  +   E  
Sbjct: 119 ATVNRYLNLVRAILN-RAKNEWEWIDGFPKIKMYKESNNRNRSLTPEQADKLLAELPE-- 175

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
             R    F LY+GLR  +      +H+      +   +           +     +    
Sbjct: 176 HQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSIITKQ 235

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           IGK   F+ + + K      ++ ++    +AG+ +   H +R   AT    AG   HEL 
Sbjct: 236 IGKHPQFVFSYRGKHIRYANTLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQ 295

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              GWKT    E Y   A         + R++ + 
Sbjct: 296 HLGGWKTRAMVERYAHIAPEA--LSNAASRLNKIK 328


>gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026]
 gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026]
 gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli TW10509]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200]
          Length = 287

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +  L++  + +++                  +             +  
Sbjct: 61  HSRATLKLQLNGIHFLYEHVLGRDFTVQLSLPKR------PHKLPQLLSCQDIAALLYHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K  +        V +    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  AG+    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 361

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 94/326 (28%), Gaps = 29/326 (8%)

Query: 18  HGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK           GRRIR           AY   +   +  + ++   +     ++ L+
Sbjct: 8   NGKWQAQVFPNGRDGRRIR-RQFATKGEALAYERHIKEQSQDKPWLG-EKADKRRVRDLV 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------- 126
           + +  +     LA       +   +      GD    +   K   +  E R         
Sbjct: 66  TAWYNAHGVT-LADG--EKRKGAMEFACYAMGDPLATEFNAKIFSTYREQRLSGKITRSD 122

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                TP +    L   R +F    R  ++ A NP  +V   K     +   T E+  + 
Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEATRL 182

Query: 183 KSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                +     L    +  L +G R  ++     + +     +    K      V + + 
Sbjct: 183 LEECEKSKADDLTAIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEE 242

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             +LL  +   K  F           + F    K    +    + +H +R   A+     
Sbjct: 243 LYELLPKSRTSKPLFTGC-------YSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMG 295

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     L    G   +     Y   A
Sbjct: 296 GGNILVLQRILGHTDIKVTMRYAHFA 321


>gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 384

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 97/347 (27%), Gaps = 34/347 (9%)

Query: 8   PPFVTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           P  + K     G+  Y  R          G               A+ S           
Sbjct: 6   PRGIRKRLNAAGEPRYQVRYLIRDPAAPSGWVETSATFPTLREAKAFKSERDNEAALGAR 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
              PR   T L+ +  ++  S     ++  +   +  +++ +I  + G     +I+   +
Sbjct: 66  RFDPRLGRTPLQRIWVQFSDSKKPA-VSPKTWSGYTQHWELRIKPRFGHVPVDEISRGDV 124

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           ++ V+     P + +  L  +R +   A +   +  NP L V   +        +     
Sbjct: 125 QAFVDDLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYLTAQE 184

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQ 227
            Q  +              L Y+GLR S+     V+ +               +      
Sbjct: 185 VQTLATACGDQGD--VVTILAYTGLRWSELVGLRVKDIDLVARRLYVRRAAPEVEGRIVI 242

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------SIWFKAKAT 278
                          +++      + +    ++    +                +     
Sbjct: 243 GPPKTRAGIRTVPLPQVVVDIFKTRISGRAPDEPAVTSPNGAMLRSNNWRRHTHWNKALK 302

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
           K  +   + H +R   A+++  +GA    +  T G  T       Y+
Sbjct: 303 KTNLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349


>gi|312109706|ref|YP_003988022.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214807|gb|ADP73411.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 399

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 112/365 (30%), Gaps = 52/365 (14%)

Query: 26  RKGHGRRIRLPY----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           R    + IR+                   L     + E       +   L   I E+   
Sbjct: 26  RLRRTKTIRIEDEALLKTTKKLRDYLNEELLKFKMEVEAGEYIAPEKMKLADFIKEWETK 85

Query: 82  AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSS 132
                L+  +  ++ S+    I+   G     +I   HI        R+  + +     +
Sbjct: 86  YAVKELSETTLNNYLSHIKNHILPALGHMRIDQIKPVHIVNFLDQIKRADGKKKPLATRT 145

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSE 188
                 ++R + + AV  + +  NP  +V++PK K E ++     D ++    F++  +E
Sbjct: 146 IENAYLTIRNILQRAVEWQIIKSNPASAVKKPKSKKEAVKEVQVYDEKEVEALFRAVQNE 205

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------------ 230
               R+     + +GLR  +       ++      I+  K                    
Sbjct: 206 PFHWRIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVKGRKRSVEKSPKTKKSN 265

Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                         +         ++   +    KE  F N D +    T  + W++   
Sbjct: 266 RLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDGRHFYPTTPTTWWRRFT 325

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKN 335
            +AG+     H +R  SAT+  + G  A  +    G   +      Y       +   + 
Sbjct: 326 KRAGIRYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIRVTMDIYGHALQ--KADHEA 383

Query: 336 SRRIS 340
           + ++ 
Sbjct: 384 ANKLD 388


>gi|163856477|ref|YP_001630775.1| hypothetical protein Bpet2166 [Bordetella petrii DSM 12804]
 gi|163260205|emb|CAP42507.1| int2 [Bordetella petrii]
          Length = 402

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 94/365 (25%), Gaps = 35/365 (9%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59
           P    + T  G+      Y    G  R+  L    E T   A        A         
Sbjct: 29  PGFLCKITPAGRRVFMLQYRTNAGERRKPALGLFGELTVEQARVMAQDWLAEVRRGGDPG 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+  L  ++ +         +++  ++   D+ II   G      +    
Sbjct: 89  GAKTEARKAPTIAELCKKFMEDYSKKRNKPSTQEGYQGVIDRCIIPLLGRKKVLDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   +E   + P+ A +    +R +F  A    Y           P            + 
Sbjct: 149 IAGLMEKLSYKPTEANKAFGVLRKMFNLAEVWGYRPDGTNPCRHVPMFPPGKETRLIVDG 208

Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                            E     LA         R S+ C      L      +    + 
Sbjct: 209 ELALIYRHLDKLEAEGLENYVIPLAIRLQFEFAARRSEVCPLEWTWLDFENRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284
           T    +        L  T   +E                +       +      AGV   
Sbjct: 269 TGGMSKPMSAEAYRLLSTAPRREGCPYVLPSPHNPDKHLTFGEHYGGWCRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  S T  A++G      M   G KTV     Y    D+            R  I
Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388

Query: 334 KNSRR 338
             +RR
Sbjct: 389 TGARR 393


>gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502]
 gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 349

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 82/295 (27%), Gaps = 23/295 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
                +              K L   Y + +    + V +    E     +I+    D +
Sbjct: 39  AADFEREFLNKQKNNCDMNFKELSDLYLEHSKTR-IRVTTFQVKEIIIKERILPYFKDMN 97

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRK 167
              IT  +IR                      +  +F +A++   +  NP L      +K
Sbjct: 98  VNNITPNNIRKWQNKLMSKDYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPMGKK 157

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCR 211
                 +   +  +      +    +LAFE L ++GLR  +                S  
Sbjct: 158 DSEGMQFWTLEEYKEFIKCVDNPMCKLAFEILFWTGLRKGELEALTFSDIDTKNKIISIT 217

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +         +   +   V + D   + +         F  N     +       
Sbjct: 218 KTYTRINKKDIINPPKTPKSKRKVSISDFLCEDIENYKKKLYNFDKNERIFPVGRHILKN 277

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             +    K+ V     H +R   A++  + G +   +    G + +    +TY+ 
Sbjct: 278 SMRDACEKSSVKEIRIHDLRHSHASLLIELGFSPLLIKERLGHENIQTTLDTYSH 332


>gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str.
           8401]
 gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401]
          Length = 345

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 298

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 85/289 (29%), Gaps = 28/289 (9%)

Query: 69  TTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIR--KSGDFDYRKITTKHIRS 121
            TL  ++S +          + ++  ++         ++ +           +    +R 
Sbjct: 1   MTLPEILSAWHDHLAHGRRRSPHTVRAYVATARRLITRLEQDGALHWARLGALDATALRH 60

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +  R+       SA + L++++    +A R +         +  P+ K    RP T +D
Sbjct: 61  YLADRREHGIGNVSAARELSALKAFIAFA-RTQADMPPGAPRLRGPRVKKGLPRPITPDD 119

Query: 179 MQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                       +     ++       L  SGLR  ++       L      + T K G 
Sbjct: 120 AVNLAETVAEDATEPWIAARDTAVLLLLYGSGLRIGEALALPAGILPAGESMVITGKGGR 179

Query: 232 IITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVN- 283
              V L       L                 F       ++A              G+  
Sbjct: 180 QRLVALLPVVRAALERYAALVPWPLGKDDPLFRGAKGGPLSAGMIRRAMARARVALGLPP 239

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             + H +R   AT    AGA    L    G  ++   + YTK  D  RL
Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTK-VDAARL 287


>gi|52842271|ref|YP_096070.1| prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629382|gb|AAU28123.1| Prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 99/333 (29%), Gaps = 19/333 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             ++G        G  R  R            +              ++   +  +    
Sbjct: 4   TKKNGFWWIDVTFGDKRIRRSTRTKVKQQAQQFHD--NFLQDLWSNKHTKLPQQKSWVDA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPS 131
           +  + + +        S ++ + +   +    G     +I  +    I    E    TP+
Sbjct: 62  VVRWLEESAHK----RSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPT 117

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L  +R +   A ++    IN        K + + IR  ++    +         +
Sbjct: 118 TVNRMLEIIRAILNKAHKEWQ-WINTMPLFRMRKVENKRIRWLSRGQANKLIQELPNHLK 176

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAM 247
              AF   L +GLR S+  +     +                   I V L    + ++  
Sbjct: 177 DMAAF--TLATGLRQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEK 234

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                 TF      + +     +  ++    +AG+ +   H +R   A+     G +  E
Sbjct: 235 QVGLHPTFVFTYFGKPVTRCN-NHAWQKALIRAGIKDFRWHDLRHTWASWHVQNGTSLQE 293

Query: 307 LMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
           L    GW   +    Y    +D +++  +   +
Sbjct: 294 LQQLGGWSEYEMVLRYAHLSSDHLKVAAERITK 326


>gi|300856412|ref|YP_003781396.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436527|gb|ADK16294.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 372

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +P    ++R +   +I    +    G+R++       T   A  + +   +         
Sbjct: 1   MPGGHIRKRGKRYNVIVEVERNPVTGKRLQKSIGGFKTKKEAEKALIEAVSNIN-KNEFI 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
             + T +K  ++ +  +    +L+  +   ++    + +I   G+ + +K+   HI+   
Sbjct: 60  FPEKTLVKDFLTLWLDTYAI-NLSPTTYNGYKMIINNHLIPSIGNKELQKLQPLHIQRYY 118

Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             ++ T    + +Q    +R    +A + + ++ NP   V+ PK +           ++ 
Sbjct: 119 NEKQKTLKGKTLLQHHRVLRKALNYAWKMQLISRNPADMVDAPKVQKYRAVVLEPPQVKT 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------------- 224
             S   E ++  +     L  GLR  +        +      I                 
Sbjct: 179 LLSA-VENTRFEIPVNLALALGLRLGEVLGLRWSDIDFENGIINIEQTLVRAGTKLIFKE 237

Query: 225 -------KTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFS 270
                  ++      +   L       L                    ++ Q +N + FS
Sbjct: 238 PKTEESARSISAPQELLKLLKQHKKNQLELKVRSYGEYENKHNLVCTRDNGQPLNTSSFS 297

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
             F     K  +     H +R  +AT+   +G       +  G  T+      Y+     
Sbjct: 298 HAFGDFIKKVDIPHIRFHDLRHTNATLMLLSGTAPKVASSRLGHSTIGITMDLYSHVL-- 355

Query: 329 IRLGIKNSRRISSVV 343
             +  + + +++ V+
Sbjct: 356 KDMNKEAADKLNDVI 370


>gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL
           J2-003]
          Length = 259

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 19/231 (8%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +   + ++ +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + 
Sbjct: 13  LDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKF 72

Query: 174 WTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQ 227
           +  E+M+       E       + R+  E L  +G+R S+           +    +   
Sbjct: 73  FYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRG 132

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAK 276
           K      V         +      +               +N+    +            
Sbjct: 133 KGNKERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 192

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +KA +      H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 193 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 243


>gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 398

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 98/349 (28%), Gaps = 26/349 (7%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPRKKPT 69
            G+ +Y  +     R+R      ++ +  Y +        A               +   
Sbjct: 50  SGRNVYIVQTRMAGRMRTVTIGPTSVLTRYQAQMVARRVIAYAQVGRDPATERQRIRSAP 109

Query: 70  TLKWLISEYRKSAHWGSLAVN--SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           +    ++EY         A    +   +      +          ++   H+ S      
Sbjct: 110 SFADFVTEYWDRWAPRWKASTLETHTGYRR--RYLDDAFVGVYIDELNEGHVTSWFADLN 167

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P ++ +    ++ +   A    Y   N          +      +   D       
Sbjct: 168 NLTGPGASNRTFEILKHMLNKAEDWGYRLENTNPCRSVRPNRKRQCERFLTNDELARLGA 227

Query: 186 WSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                +            A   LL +G R S+        ++ N   ++  KTG      
Sbjct: 228 ELTNLRASEDRTKQCSGAAITLLLLTGCRKSEILTLEWTDIKGNRLHLRDSKTGPRTVWL 287

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                  + A+    +  +   N + +      + +++    +AG+     H +R   A+
Sbjct: 288 GSAAREVIAALPRFERIPYPFWNYRYRKPLRCVNGFWRRLRDEAGLPDVRIHDLRHTFAS 347

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            +A    T   +    G   V     Y    D   L  + +++I  +++
Sbjct: 348 HAAMNKETLPMIGRLLGHANVQTTARYAHFDDGHLL--EAAQQIGDLLE 394


>gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
 gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM
           13479]
          Length = 424

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 37/346 (10%)

Query: 11  VTKERTRHGKIIYYFRKG--HGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +  ++ + G+       G   G+  R  +           Y   ++            ++
Sbjct: 52  IMPKKRKDGRYSKQVTIGIKDGKPVRKTIYGSTIKELDKNYRDFMSLMD----KGIILQE 107

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + TT K L   +  +   GS+   +  + +     +    GD   + +   HI S     
Sbjct: 108 QNTTFKELSELWLTNEKLGSVRDQTISTIKGQLSTVNSYIGDIRIKDLRMSHIESFRSYM 167

Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +   A     L+ ++ + ++AV+++ +A +    ++R K   +  R  T E+   F+ 
Sbjct: 168 IKSKKLAQYNLCLSRIKAIVRYAVQKDIMAKDITAGMKRVKIDKKPKRALTSEERLLFEI 227

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQ 227
                S  R     LLY+GLR  ++    V+ +                   N    +  
Sbjct: 228 TD-LDSFERCFINLLLYTGLRKCEALALDVKDIDLKKNQIYVSKTLVASKKINTCLQEYT 286

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-------- 279
           KT   +        +  +    I   +  +   K     +     ++    K        
Sbjct: 287 KTAAGLRQIPIPAPLAKILFEFIKGRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTP 346

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              + + H  R   A+    AG    +     G   +    +TYT 
Sbjct: 347 LSDDITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTH 392


>gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 386

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 111/375 (29%), Gaps = 45/375 (12%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMS 49
           M       + P  + +++  +G    Y   +R G   +  L                  +
Sbjct: 1   MAKKTTVQKEPVKLREKKLSNGNSSLYLDIYRNGKRHKEYLKLYLIDATTPMEREQNRQT 60

Query: 50  ALTGSTPKREYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYF 99
             T    K + +   +    +           +  YRK          S+ ++    S  
Sbjct: 61  LATAQAIKSKRLIEMQNGEYSFTRQFKEDTPFLEYYRKMVEDRHKNPESKGNWGNWRSCL 120

Query: 100 DQIIRKSGDFD-YRKITTKHIRSGVE---------SRKHTPS---------SAIQFLTS- 139
             +     +   ++ IT + I    +          ++  P          S    ++  
Sbjct: 121 RYLEIYCDEKTTFKDITPEFIAGFKDFLDNVEKDTHKRTGPRRERDVFQGLSQNSKVSYF 180

Query: 140 --MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R     A  +  +++NP   +E  K         T E+++Q  +        + AF 
Sbjct: 181 NKLRACINQAYDERIISVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFL 240

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F   +GLR SD  +     +Q      +          +               +     
Sbjct: 241 FSCLTGLRKSDIQKLTWSEVQKFGDYTRIIFKQKKTGGQEYLDISPQAEKYLGERGNPED 300

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                    +  S+  +  + KAGVNK  + H  R   A +  D GA  + +    G K 
Sbjct: 301 PVFTGFTYGSWTSVELQRWSMKAGVNKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKE 360

Query: 316 VDQAETYTKGADRIR 330
           +   + Y K  D+ +
Sbjct: 361 LATTQIYAKVLDKNK 375


>gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1]
 gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 19/236 (8%)

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D   +    +RS + SR+      SSA + L++++ L  +A  +          +  P+
Sbjct: 11  HDVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYARSEAGDPDPSAPRLCGPR 70

Query: 166 RKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K    RP T ++                 G++ R     +  SGLR +++     +   
Sbjct: 71  LKKGLPRPVTPDEAVNIADLIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEGRDAV 130

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSI 271
                  T K G    V +     + +A            ++          ++A     
Sbjct: 131 LGETLQVTGKGGKQRLVPILPITREAVAEYANACPWPLPTHEPLFRGAKGGPLSAGMVQK 190

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                    G+    + H +R   AT    AGA    L    G  ++   + YTK 
Sbjct: 191 AMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 246


>gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 218

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 16/200 (8%)

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           M+  F +  ++  +  +P   ++ PK + +     +  ++          +    + +  
Sbjct: 1   MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNALLDQPGMTTSKEIRDKAM 60

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT------- 248
            E L  +G+R S+     +  L   +  I  +       V       + L++        
Sbjct: 61  LELLYATGIRVSELIGLELSDLNMQVGYITCRDGQKERMVPFGKPAKQALSVYLEKGRSQ 120

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                  +  F N   + M+   F    K    KAG+  + + H +R   A      GA 
Sbjct: 121 LLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLIRGGAD 180

Query: 304 AHELMATYGWKTVDQAETYT 323
            H + A  G         Y 
Sbjct: 181 IHAVQAMLGHSDSTTTHMYA 200


>gi|283469696|emb|CAQ48907.1| integrase [Staphylococcus aureus subsp. aureus ST398]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 111/385 (28%), Gaps = 60/385 (15%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F          G  +R                + L     +  ++N
Sbjct: 2   IKKYKKKDGSTAYMFVAYLGTDPITGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118
           +     TT K +   + +     ++  ++   ++          +    D   +KIT  +
Sbjct: 62  NDI---TTFKEVYELWLEQYQ-NTVREST---YQRVLTLFDTAILEHFQDVPIKKITVPY 114

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPW 174
            +  +       S           +FK+AV  + +  NP    + P++K        + +
Sbjct: 115 CQKVINKWNKKYSDIKAIRIYTSNVFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYY 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           + ++++QF +F  +       F  L ++G R  +      + +     +I   KT     
Sbjct: 175 SSDELKQFLTFVEDDPLYYAIFRTLAFTGFRRGELMALTWKDIDFTKQTISINKTCARGA 234

Query: 233 ---------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +        ++ L       +         + N
Sbjct: 235 NYKLIIQEPKTKSSHRTISIDDKTASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDN 294

Query: 266 ATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +               S      HG R    ++  +AG +  E+    G   +    
Sbjct: 295 KPLYPEHCNKALDLICEKNSFKRIKVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTM 354

Query: 321 -TYTKGADRIRLGIKNSRRISSVVD 344
             Y    ++ R   + + + +  ++
Sbjct: 355 DIYAHVTEKQR--DQVADKFAKYIN 377


>gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 375

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 116/361 (32%), Gaps = 43/361 (11%)

Query: 11  VTKERTRHGKII----Y--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + +  ++HGK+     Y    + G   R +            + +         +   + 
Sbjct: 3   IKQVDSKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNK 62

Query: 65  RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           +  P   T+K L   + ++    ++  ++     + F+  II   GD     I    ++ 
Sbjct: 63  KTTPNVMTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTHVTDIKPLDLQR 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + + +       +    +R L   AVR + + ++P   +E PK + +  +     D+ +
Sbjct: 122 YINTMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDE 181

Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           FK         +     Q          +G+R  +      + +  N             
Sbjct: 182 FKAFLEVLDSQYKYINQQAYTLLRLGALTGMRTEELLALQWEQVDFNGGYISIVQALGRG 241

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----I 271
                +    +   +  T+++ +  + +L+           ++                 
Sbjct: 242 FNGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNDDFVFNNQGKTLQVMRPNK 301

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           W    + K GV    S H +R   AT++ D GA+  ++    G   V    + Y+    R
Sbjct: 302 WLHDVSDKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361

Query: 329 I 329
            
Sbjct: 362 A 362


>gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 392

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 101/355 (28%), Gaps = 48/355 (13%)

Query: 15  RTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R R          G       R               +++ L        Y+   +K   
Sbjct: 16  RKRGNSWSVVVYLGYDEQGKKRYKWHGGFKTKRDAERFLATLVEQVHDGTYVEPSKK--- 72

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T+   + E+        +   +  S+    +  II + G  +  K+   HI+        
Sbjct: 73  TVGAYLREWLDDKR-TKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYTDLQT 131

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  S +     +      AV+   +  N   +VE P+   + +R WT E +  F 
Sbjct: 132 GDEHISKRSVLHAHRILHQALDRAVKWGLITRNVTDAVEPPRPARQEMRVWTDEQLDAFL 191

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
               + S+  +AF  L  +G+R  +      + +      ++  ++ +            
Sbjct: 192 QAARK-SRYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSYSYTGKGYRIEEPK 250

Query: 232 ----IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWF 273
                 ++ LP   + LL                     +        + +        F
Sbjct: 251 TESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVICTAFGKPILQHNLRTSF 310

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                + G+ +   H +R   ATI    G     +    G   +     TY+   
Sbjct: 311 HRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQERLGHSDITLTLNTYSHVV 365


>gi|148359487|ref|YP_001250694.1| phage related integrase [Legionella pneumophila str. Corby]
 gi|148281260|gb|ABQ55348.1| phage related integrase [Legionella pneumophila str. Corby]
          Length = 413

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 96/332 (28%), Gaps = 34/332 (10%)

Query: 31  RRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           +RI L    + T   A   A      +             + K  TLK    +Y K+   
Sbjct: 59  KRITLGKYGQITAEEARKQAKHLLGQIAKGDNPIAEKKINKIKSITLKEAFHDYLKAR-- 116

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142
             L + +   ++S   Q+I    D     IT + I         T S   A   +  +R 
Sbjct: 117 KDLKILTIKDYQSILKQVISDWFDKPLMNITREMIAKRHAQYGQTNSKARANYAMRVLRA 176

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGS------ 190
           +F +A  +  +     +    P       R W               + W EG       
Sbjct: 177 VFNFAAHEYQLEDGQPIIAINPVEYLSHTRSWYRVDRKNTMIKSHQLAAWHEGLTRLGEQ 236

Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                    +  F  +L++GLR +++     + +                +       F+
Sbjct: 237 EDYSQAMMWKDYFLLVLFTGLRRTEAASLCWKDVDFKDKTFTVQDTKNREVHTLPMSDFL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             L +     +                         A  +GV+ + H +R+  AT +   
Sbjct: 297 YELFLRRKQFKMNEFVFPSPSKTGHVIDPRKAMLKVAELSGVSFTVHDLRRTFATTAESL 356

Query: 301 GATAHELMATYGWK-TVDQAETYT-KGADRIR 330
              A+ L      K   D    Y  +  +R+R
Sbjct: 357 DLPAYALKRLLNHKMNNDVTAGYIMRDVERLR 388


>gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus
           S26/3]
 gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141
             L+ NS  ++       ++ +      +I+   +      +  RK   ++  + L +++
Sbjct: 22  RGLSSNSISAYCQDITLFLKINTITSIAEISQDSVHLFVRQLHKRKEAEATLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194
           V F++    + +   P +  E PK         T +++    +            ++   
Sbjct: 82  VFFRFLKEAKLLEHPPLI--EHPKIWKRLPTVLTPQEVDALLAIPKKTPTSSLISTRDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMKL 244
               L  +G+R S+ C   +  + ++   +  + + T +                 F + 
Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRVTGKGSKTRLVPLGKLASAAIDAYLCPFREN 199

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L      +   F++    K+  +         A +    + S H +R   AT   D  A 
Sbjct: 200 LQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G   +   E YT  A
Sbjct: 260 LRVIQEMLGHARIASTEVYTHVA 282


>gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 380

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 111/324 (34%), Gaps = 29/324 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R+ + + +R     +     A ++A  G+ P+       +     L   ++  RK+    
Sbjct: 56  RRQNAQTLRKAEDIQRERTEALLNAKVGTVPE------SKSSDMLLSDWMTIVRKNHEHR 109

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQ 135
                     ++    +++   D     +  +     ++  +           TP +A  
Sbjct: 110 E--ARDLNGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           + T++R     AVR+  +  NP   +E     K         T E++++  +      Q 
Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRDFLTIEEIKKMIATPFFNEQV 227

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMT 248
           R A+ F  + GLR SD  +   + +  +           KT   + + L    +K L   
Sbjct: 228 RQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPER 287

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                   +       +    S   K  A KAGV K  + H  R   A +    GA  + 
Sbjct: 288 NGCTPDGLVFGGLPNTSNLCVS--LKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           +    G ++V   + Y K  D+ +
Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKK 369


>gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199]
 gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199]
          Length = 285

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 90/283 (31%), Gaps = 18/283 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           +  YR+S+ +  LA  ++  +    D + +  G  D   I+T  + + ++          
Sbjct: 2   VDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWRF 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQ 191
           A   L  +  +F   + +    +NP   V +  R  E         D +      +  + 
Sbjct: 62  ANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIEVVLAAAPAG 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVELPDGFM 242
             LA     Y+GLR  D+    +           +              ++    P    
Sbjct: 122 VALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPRLVQ 181

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKA------KATKAGVNKSAHGVRKFSATI 296
            +            +    +   +  F             A K G   + HG+R   AT 
Sbjct: 182 LIDNRKAGDSTVMVLGMRGRPYTSDGFRTMLFRVIAQLEAAGKVGEGLTFHGLRHTVATK 241

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +D GA    +    GW +   A+ YTK  DR +      R+I
Sbjct: 242 LSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284


>gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
 gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2]
          Length = 378

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 81/302 (26%), Gaps = 45/302 (14%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131
           +  Y +       LA  S   +    +++ R +        ++T  HIR  V        
Sbjct: 23  VQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSAGR 82

Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------- 181
           S       L+  R  F WA RQ  +  NP L +  PK      +    +   +       
Sbjct: 83  SGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGA 142

Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
                ++      +     E L  SGLR  +          +     +            
Sbjct: 143 AGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHV 202

Query: 230 ----GTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIW 272
                   +V +       L                       F+     ++        
Sbjct: 203 LGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTLSIWRR 262

Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + ++ +AG+      H +R   A+    +      +    G  ++   + YT+  D   
Sbjct: 263 LRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTR-LDFQH 321

Query: 331 LG 332
           L 
Sbjct: 322 LA 323


>gi|91788824|ref|YP_549776.1| phage integrase [Polaromonas sp. JS666]
 gi|91698049|gb|ABE44878.1| phage integrase [Polaromonas sp. JS666]
          Length = 387

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 108/339 (31%), Gaps = 23/339 (6%)

Query: 9   PFVTKERTRHGKIIYYF--RKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKR-----E 59
           P +    +  G   Y    RK  G   R+ +    + T   A   A              
Sbjct: 32  PGLWLRVSSAGVKTYAVLARKKGGALERVTIGTADKLTPENARDKAKKIIADLATGVSHA 91

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                ++  TT   L+++Y  +    ++   S  +++  +   +    G      ++ + 
Sbjct: 92  ASARAKRGETTFAELLTDYLSN---TTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVER 148

Query: 119 IRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           IR+  +   K TP++A + ++ ++  F WA+++            +   +T   R     
Sbjct: 149 IRALHKKISKDTPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKKNTETSRTRYLQPA 208

Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++  F     E     +  F   L +G R ++        +       +          E
Sbjct: 209 ELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIWRIPAGDAKAGEE 268

Query: 237 LPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +    +         L +       +    D +  +  +    +     ++G+ +   H 
Sbjct: 269 MNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSGLADLRIHD 328

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +R+   +     GA         G K++  A  Y + AD
Sbjct: 329 LRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIAD 367


>gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens]
          Length = 465

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 125/389 (32%), Gaps = 52/389 (13%)

Query: 10  FVTKERTRHGKII--------------YYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           ++ + R  +G+                ++      ++  +P    +T            T
Sbjct: 71  YLARYRKANGQPYTPDSQRRRLRSLRLWFDWL--QQQHAIPASPATTLASPDRKKRPSVT 128

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112
                 ++   +  TL+  ++ + ++     L+  ++ S+E             G     
Sbjct: 129 ETHGQPDAIPARFATLRQHLAAWLEAVQGQGLSERTQESYEERLLPFVTWCEARGVMTAP 188

Query: 113 KITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +++   + S     +         ++P S    L+ +R  F+W +++ ++  NP  S+  
Sbjct: 189 QVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPVDSLVL 248

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           PK +         ED        +      G + R+  E L  +G+R  +     +  + 
Sbjct: 249 PKEEKRLPAQVMNEDETHTVLAAANIDTLTGLRNRVILEVLWSTGIRRMEVANLLLSEVD 308

Query: 219 NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA- 275
                +  +  K      V + +  +  L+     +       D   +  T+        
Sbjct: 309 FGRGVVLVRQGKGNKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLFITRKGRGLARG 368

Query: 276 ---------KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                       +A +    + H  R   AT   + GA    + A  G + ++  + YT+
Sbjct: 369 TLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTR 428

Query: 325 GA--DRIRLGIK---NSRRISSVVDSDDP 348
            A     ++  +     R+      SD+P
Sbjct: 429 VAIGHLKKVHEQTHPAERKPEQKTPSDNP 457


>gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
 gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16]
          Length = 320

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 85/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I  +      K+   H+ + +         A +   
Sbjct: 10  KEHMIARHYAPKTIQAYLLWITKFILFNDKAHPSKLNESHVEAFLTHLAVDCKVAAKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +           ++  +  ++ +   +     TK++M++F        + +L   
Sbjct: 70  LALNSISFLYREYFRTPLSVEMKFQKSQLDRKLPVVLTKDEMRRFLMH--IDPRYKLHIM 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------------------- 230
            L  SGLR  +  R  VQ +  +  +++  +                             
Sbjct: 128 LLYGSGLRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLLKEQQGIALRY 187

Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQF 269
                         I            L                       +  +N T  
Sbjct: 188 YKKDINSPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGELKRHHINETSL 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A +AG+ K  + H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRSAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 297

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 85/284 (29%), Gaps = 25/284 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFD---YRKITTKHIRSG 122
             LI ++          + ++R ++ +  ++          G  D      +T   +R+ 
Sbjct: 3   SDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAY 62

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +  R+      +SA + L+++R   ++             P +    P+  +        
Sbjct: 63  LADRRAEGLGNASAARELSALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQLA 122

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++++        G++       L  +GLR  ++       +        T K      V 
Sbjct: 123 QNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTGAAMPLGDTLRVTGKRNKTRIVP 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAH 287
           +     K +A                        ++     +  ++     G+    + H
Sbjct: 183 ILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTTPH 242

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +R   AT     GA    L    G  ++   + YT   D   L
Sbjct: 243 ALRHSFATHLLAGGADLRSLQELLGHASLASTQIYT-AVDAAHL 285


>gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 348

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 96/277 (34%), Gaps = 24/277 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----V 123
             T   L  ++  +    +L+  S + +++  +          + K+TT  IR       
Sbjct: 56  DRTNAELWKKFFLTKKAENLSDKSLLYYKNSLELF-SLFVKKSFLKVTTDDIRLYLAVER 114

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E  +    S       +   F +   +EY++ NP   +++ K +      +T+ ++++ +
Sbjct: 115 EKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKRIKKVKGQKTEKTAFTQLELEKLR 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228
               E S  +   E L+ S +R ++     ++ +      IK  +               
Sbjct: 175 MAC-ENSLEKAIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGIAFMSTIAA 233

Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
                 I+         L  +  +  + +       K+    F    K+ AT+A V    
Sbjct: 234 LAIKKYISERGNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVENVH 293

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H  R+  AT++   G    E+    G + ++    Y
Sbjct: 294 PHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIY 330


>gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 305

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 22/285 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
             + K      L   +  ++     ++     D     ++   +       +  H+ SS 
Sbjct: 17  ELHLKHLKLKGLQPKTIEAYSRAIRRVGDYF-DHQIGDLSEADLVDYFTDLRETHSWSSV 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L  ++  ++  +++ +VA +    ++ P+ +        +E  + F +      +  
Sbjct: 76  KLDLYGLKFHYEHVLKKPWVAPS---LIKPPRSQRLPDIVTVEETERIFLATQVLSYRVF 132

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
               + L   L        G          I+  K      V LP    +LL        
Sbjct: 133 FFTLYSLGLRLGEGLRLTVGDIDGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQRHR 192

Query: 254 TFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              +    +             ++        +A     GV K  S H +R   AT   +
Sbjct: 193 NPVLLFPNRHGGLAGARAARTPLDRGGVQKALRAVVESCGVKKHISPHSLRHAYATHLVE 252

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           AG    E+    G  ++     YT   DR R       RI++++D
Sbjct: 253 AGVELTEVQDILGHHSILTTVRYTHLTDRSR--HHAIDRINALMD 295


>gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
 gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 91/277 (32%), Gaps = 30/277 (10%)

Query: 85  GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
             L+  + +++E  F ++    +      R +   H+R  +         P S    L++
Sbjct: 46  RRLSAKTLLNYEEAFRRLGEAAQRDGVALRAVQPHHVRHWMARLHAGGLAPRSIAIALSA 105

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193
            R L++W   +  VA+NP   +  P+      +  + +                   + R
Sbjct: 106 WRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHRQVDGDARLEARDR 165

Query: 194 LAFEFLLYSGLRCSDSC--------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              E L   GLR ++           A     + +  +    K     +V +    +  L
Sbjct: 166 CLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKGSKRRSVPVGRAALAAL 225

Query: 246 AMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                       + +   F++   +++ A+Q     K +A +AG+      H +R   A+
Sbjct: 226 DDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERAIQAGLPTHVHPHMLRHSYAS 285

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               +      +    G   +   + YTK  D   L 
Sbjct: 286 HLLQSSGDLRAVQELLGHANITTTQVYTK-LDFQHLA 321


>gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
 gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234]
 gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a
           [Sinorhizobium fredii NGR234]
 gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b
           [Sinorhizobium fredii NGR234]
 gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c
           [Sinorhizobium fredii NGR234]
 gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d
           [Sinorhizobium fredii NGR234]
 gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e
           [Sinorhizobium fredii NGR234]
 gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f
           [Sinorhizobium fredii NGR234]
 gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h
           [Sinorhizobium fredii NGR234]
 gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16
           [Sinorhizobium fredii NGR234]
          Length = 286

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 18/278 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           L     +     +L+  ++ S+     +  R  G     ++  + +R+       +  S 
Sbjct: 7   LRRRMIEDMTIRNLSPATQRSYLHAVTKFSRYFGRSP-DRLGLEDVRAFQVHLVSSGLSW 65

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q + ++R  F   +    +           +   +       +++ +F        
Sbjct: 66  PALNQTVCALRFFFGVTLGHAEIPERIA----YARTPAKLPTILNGDEIVRFLEAV-PSL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248
           + R A      +GLR +++    V ++      I+ +         V L    + +L + 
Sbjct: 121 KTRTALTTAYAAGLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVY 180

Query: 249 P----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
                     F   ++ + ++        ++    AG++K    H +R   AT   ++G 
Sbjct: 181 WKLVRPQVWLFPGRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGT 240

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339
               +    G   +     YTK ++ + R       R+
Sbjct: 241 DIRIIQVLLGHNNLSTTARYTKVSNTLIRATTSPLDRL 278


>gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis]
 gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 407

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPVDKNCLIFNLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 400

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/372 (15%), Positives = 107/372 (28%), Gaps = 59/372 (15%)

Query: 13  KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++R+++         G    G  IR      +         L     + E          
Sbjct: 15  EQRSKN-SWRMRVTVGYDYKGTPIRAGRTTRTKNEREREKELRNFITELEQNGYTAPARM 73

Query: 70  TLKWLIS-EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T K  +  EY       +L V +    ++S   +     G     KITT HI + V   +
Sbjct: 74  TFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQ 133

Query: 128 H--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                +P S      ++  +F+ AV  + + INP   V  PK  
Sbjct: 134 KPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTT 193

Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 +T  +++   +    E  + ++     L SG R ++     V+H+      I  
Sbjct: 194 KRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDEITF 253

Query: 227 QKT---------------------GTIITVELPDGFMKLLAM---------TPIGKETFF 256
           ++T                        I   L +     ++               +  F
Sbjct: 254 EQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLF 313

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            N + + +        +K    +  +     H +R  SAT+  + G     +      K+
Sbjct: 314 ANMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKS 373

Query: 316 VDQA-ETYTKGA 326
                  Y    
Sbjct: 374 SVTTSNIYAHVL 385


>gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 446

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 101/353 (28%), Gaps = 40/353 (11%)

Query: 25  FRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISE 77
           +R   GR  R  +      T   A   A        +        +  +   T+  L   
Sbjct: 55  YRTPDGRPRRAVIGRFGLMTVEEARDLAHEKLVAVSKGLDPFAAEAESEGRVTVAELCDW 114

Query: 78  YRKS--------AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           Y                +  ++     S  D  I    G      +    I +       
Sbjct: 115 YLADAETGRILGRRRRPIKASTLAMDRSRIDSHIKPLLGRRQVGALKLGDIEAAQADIAA 174

Query: 129 TPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             ++                 A + L+++  +F+ AVR   +  NP   V R        
Sbjct: 175 GKTAKARKGSRGGATTGGEGVAARTLSTLHAIFEHAVRVGKIPSNPAKGVRRLASAPRER 234

Query: 172 RPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           R    E  +  K+        E      A  FLL +G R  +        L     +I+ 
Sbjct: 235 RLSRAEIERLGKTLRAAAEDGEHPTALAAIRFLLMTGFRRMEGLGVERGWLDEEEGAIRF 294

Query: 227 QKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             T +     +     + LL   P  K  FF   D  + +             +A + + 
Sbjct: 295 PDTKSGAQTRVIGQAAIDLLLARPEAKSPFFFPADWGEGHFIGVVRVLDRICERARLADI 354

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           + H +R   A+++ D G +   + A  G  +    + Y    + +R+      
Sbjct: 355 TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRMAADRVA 407


>gi|222112699|ref|YP_002554963.1| integrase family protein [Acidovorax ebreus TPSY]
 gi|221732143|gb|ACM34963.1| integrase family protein [Acidovorax ebreus TPSY]
          Length = 399

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 108/368 (29%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           L P    + T  G+      Y    G  R+  L    E T   A   A       R   +
Sbjct: 27  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGD 86

Query: 63  SPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
               K       T+K L +++ +         +++  +++  D+ I+   G    + +  
Sbjct: 87  PSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++   H P+ A +  + MR +F  A    +           P            
Sbjct: 147 PDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGRATHLIS 206

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         E  +          LA         R S+        +  +   +    
Sbjct: 207 DEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282
           + T    +        L                 ++  + +   ++   +      AG  
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGAT 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRIS 340
           +   HG+R  SAT  A++G      MA    KTV     Y    D    +     + R  
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRK 386

Query: 341 SVVDSDDP 348
           ++ ++  P
Sbjct: 387 TITEAQRP 394


>gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
 gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25]
          Length = 266

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 18/251 (7%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             Q + + G  D+ ++    +R             SS    L+S+R  F + + +  ++ 
Sbjct: 1   MAQHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P++K    +    +++ Q      +     + R   E +  +GLR ++    
Sbjct: 61  NPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQK 263
            V+ +Q     ++          V       + +A            G+   F++    +
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTR 180

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++             K  V  + S H +R   AT   ++      +    G + +   + 
Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240

Query: 322 YTKGADRIRLG 332
           YT   D   L 
Sbjct: 241 YTH-LDFQHLA 250


>gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
 gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149]
 gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC
           27755]
          Length = 387

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 118/387 (30%), Gaps = 69/387 (17%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F           Y  ++  +   +  +     + ++    +    TL     
Sbjct: 4   KSGIYRGRFYYKGET-----YTKDNADLKKLVQEMEDLRYEVKHGLKGKGDNITLDTWFD 58

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132
            +  +    ++  ++++ ++ ++ + I ++ G           +   +++     ++  +
Sbjct: 59  IWLNTHKKRTIKESTQVRYDDFYRRYIKKQIGKQRVADFNPIILERLLQNMADDDYSTKT 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +  +FK+AV    +  NPC  VE PK KT+ IR  T ++ ++      E    
Sbjct: 119 IRDVYNILNAMFKYAVHNRILTFNPCAGVEVPKTKTKQIRVLTVKEQREVLEHAKERIHE 178

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------------IFSIKTQKTG 230
            L     L +G+R  +        +                               +   
Sbjct: 179 NLIQV-ALGTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKYQTPKTKN 237

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------------KMNATQFSIWF 273
           +I T+ + D   K L    I  +   ++  +                   +    F +  
Sbjct: 238 SIRTIPMQDSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITEHTFQVTL 297

Query: 274 --------KAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATYGWKTV 316
                   K +  +A  NK+          H +R   AT   +AG  A  +    G  ++
Sbjct: 298 DWIEKSINKERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQGFLGHYSI 357

Query: 317 D-QAETYTKGADRIRLGIKNSRRISSV 342
               + YT   D          ++ ++
Sbjct: 358 AITLDLYTHVTDDK--AKSEMDKLQNL 382


>gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
 gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030]
          Length = 266

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 18/251 (7%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             Q + + G  D+ ++    +R             SS    L+S+R  F + + +  ++ 
Sbjct: 1   MAQHLAEMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSA 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRA 212
           NP   V  P++K    +    +++ Q      +     + R   E +  +GLR ++    
Sbjct: 61  NPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSV 120

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQK 263
            V+ +Q     ++          V       + +      +           F++    +
Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTR 180

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++             K  V  + S H +R   AT   ++      +    G + +   + 
Sbjct: 181 ISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQI 240

Query: 322 YTKGADRIRLG 332
           YT   D   L 
Sbjct: 241 YTH-LDFQHLA 250


>gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12]
          Length = 291

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 10/251 (3%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVL 143
            + + N+  ++ +   +  R         +    I++  +S      S+  + +++++ L
Sbjct: 32  HNRSSNTVRAYRTNVAEFARFVA-KPMADVALADIQAWNDSMADAADSTRRRKISAVKSL 90

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             +  +  ++  +   +    + +                    +  +       L  +G
Sbjct: 91  LTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQVLAMLAGEKDPRRHALLALLYGTG 150

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKETFFI 257
           LR S++C    + +            G                 +  +            
Sbjct: 151 LRISEACALRWRDMTRRQSGGIATVFGKGGKTRHVQVSPSLWKEIAAVRSDVGPDAPVIP 210

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            +D   ++        K  A +AG+    SAH +R   A+   DAG   H + A  G  +
Sbjct: 211 GHDGGLLHERAVDRVVKRAAKRAGLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHSS 270

Query: 316 VDQAETYTKGA 326
           +     Y+  +
Sbjct: 271 LATTTRYSHAS 281


>gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1]
 gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase
 gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1]
          Length = 337

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 85/331 (25%), Gaps = 30/331 (9%)

Query: 12  TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            ++ T++GK +   Y      R+  L       F        T +    + + S      
Sbjct: 3   VRKDTKNGKWLAEVYVNGNASRKWFLTKGDALRFYNQAKEQTTSAVDSVQVLESSDLPAL 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +    + E+    H  +L+     +  +    +    GD    +   K      + R   
Sbjct: 63  SF--YVQEWFD-LHGKTLSDG--KARLAKLKNLCSNLGDPPANEFNAKIFADYRKRRLDG 117

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       ++  +    +R +F              L   R  ++ E    +  E 
Sbjct: 118 EFSVNKNNPPKEATVNREHAYLRAVFNELKSLRKWTTENPLDGVRLFKERETELAFLYER 177

Query: 179 MQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                    + S+     L     L +G R S++       +     +    K+    TV
Sbjct: 178 DIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTV 237

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            +      +L                       F         +    +  H +R   A+
Sbjct: 238 PISKELFDMLPKKRGRLFNDA---------YESFENAVLRAEIELPKGQLTHVLRHTFAS 288

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G  T++    Y   A
Sbjct: 289 HFMMNGGNILVLKEILGHSTIEMTMRYAHFA 319


>gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM
           519]
 gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium
           sticklandii]
          Length = 334

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 85/321 (26%), Gaps = 45/321 (14%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT 116
              ++ P   K  +  +  +      + N+ +S+                   +   I  
Sbjct: 12  KIDKEIPNAFKMYVKLFTNALISSGKSNNTVVSYYLDIKTFFDYCSISEILSQEITDIRP 71

Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----------V 161
            HI S        R +   S  +    M++ F +   Q  +  NP               
Sbjct: 72  IHINSYYTHLVSVRDNNSISIKRKKYVMKLFFDFLEEQNEINKNPIPKDSVIKAKIKNPY 131

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           + P            + +           +    F  L+++GLR +++    +   +  I
Sbjct: 132 KAPTYLEIEEIKKINKAILDTNKNEFTKIRNLFIFNLLIHTGLRINEALNLDLSDFEQGI 191

Query: 222 FSIKTQKT---GTIIT------------------VELPDGFMKLLAMTPIGKETFFINND 260
            + +                                  + +  L   T       FI+  
Sbjct: 192 NTNRLYVKGKGEKERYLPIELNSTFFQIYEEGFVYNFAERYFTLRNKTKTSNCALFISKR 251

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             ++ +       +     A +NK  + H +R   AT     G     +    G  ++  
Sbjct: 252 GDRLTSRYVQKNLQELRLSANLNKNVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSIST 311

Query: 319 AETYTKGADRIRLGIKNSRRI 339
            + YT      +   +  ++ 
Sbjct: 312 TQIYTHS--NSKDLDEAIKKF 330


>gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 11  VTKERTRHGKIIYYFRKGH---GRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K++ + G  ++ FR      G+R  +         +P+   A       R  IN   +
Sbjct: 9   LLKQKRKSGPDVWVFRWYDETSGKRTYKKRNLGTVKDLPSRRDAEQAVADFRANINVEVR 68

Query: 67  KPTTLKWLISEYRKSAHWGSLAV-NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
            P T+  LI+ YRK           +  S   Y  + I  K G+     + T  +   + 
Sbjct: 69  VPITVSELIAHYRKHELTEDKKAFATIASTSIYLTNHIAPKWGEKWLSDVRTVEVEEWLH 128

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S  + P++  +    M  +F  A+R E+   NP   V    ++       T  +      
Sbjct: 129 SLPYAPATKSKIRNIMSAVFNHAIRYEWTHRNPITKVRASSKRLREPDVLTPGEFSAL-- 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------TI 232
                 + +        +GLR S+      + +   +  I   ++             + 
Sbjct: 187 VEELPLRVKAMVILAGSTGLRRSELVALTWRDVDPLLMQINVLRSCVRGRFGDTKTEASR 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV 282
             V L    ++ L +          ++                        +    +A +
Sbjct: 247 KPVPLHTSVIECLDVWRKESRYNGEDDFLFPSVRNEGRTPVTPDMILKKIIRPALVRAKI 306

Query: 283 NK---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD-RIRLGIKNS 336
                  H  R   AT    AGA                  + YT+      R      
Sbjct: 307 TGKRIGWHSFRHSLATNLRAAGADLKTAQELLRHANSRITLDIYTRAISANKREANNKV 365


>gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 381

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/379 (14%), Positives = 101/379 (26%), Gaps = 40/379 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPY--PHESTFIPAYMSAL 51
           +  L+ P  V  ++   G   YY      G+R         LP   P       A  +A+
Sbjct: 7   STRLKEPVKVRTKKLADGSESYYLDIYVDGKRSYEFLKLYLLPEINPMVKEQNRATKAAV 66

Query: 52  TGSTPKR---------EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                KR             +  +    L   +  Y                  +    +
Sbjct: 67  EAIKSKRIIELTHSKAGLKKTSVRSKMLLDDWMEAYLAEQERKG--ARGLKLLRTVCRLL 124

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY 152
                    R+I        ++  +H          +P SA  ++         AVR E 
Sbjct: 125 PLYKKKVKMREIDKDWCLGFIDWIQHTYKTRWDKPLSPKSAADYVGYFSTALNAAVRAEV 184

Query: 153 VAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +         + ER K         T ++++            + A+ F  Y GLR SD 
Sbjct: 185 IPENPIMTLAATERIKVPESKREYLTIDEIKVLIDTECPREDVKRAYLFACYCGLRLSDV 244

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-- 267
                + +  +    +        T  +     +        +                 
Sbjct: 245 YALRWKDIVQDGEQYRMSTVMQKTTTPIYLPLSRHAVRWLPERNGAEDGLHVFAGLPAEP 304

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +         AG+NK  + H  R   AT+    GA  +      G   V   + Y K 
Sbjct: 305 NINKVLAKWMATAGINKKITYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKI 364

Query: 326 ADRIRLGIKNSRRISSVVD 344
            D  +  ++    + +V  
Sbjct: 365 VDSKK--VEAVNLVDNVFG 381


>gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 372

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
 gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium
           acnes J165]
 gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes SK137]
          Length = 300

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 28/291 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++         + N+   + +    ++      GD    +I T  +R+ +   +   +
Sbjct: 7   VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 66

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179
           SA    +  ++ RV F+WA  +  ++ +P  ++   K                   +   
Sbjct: 67  SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 126

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238
           Q        G++     E L   GLR  + C   +  +         T K     TV + 
Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 186

Query: 239 DGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAG--VNKSAH 287
              ++ +      +E +   +           ++++                   +   H
Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           G+R   AT   + GA    +    G +++   + YT  + +R+R   + + 
Sbjct: 247 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAH 297


>gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113]
 gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113]
          Length = 327

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R++      ++ +  ++  +  + I   G      +    I + +         A
Sbjct: 12  LLDQVREAIRVRHYSIRTEQAYLGWIKRFIFFHGKRHPGDMGKAEISAFLTHLAIKGKVA 71

Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  +           +     VER K+ +     +T  ++++  +   +G   
Sbjct: 72  ASTQNQALNAILFLYREVLKRDVGWLDEVERAKKPSRLPVVFTPNEVRKVLALLPQGKWV 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232
             +  +     L      R        +  +++  K                        
Sbjct: 132 MASLLYGSGLRLMECMRLRVEDADFHYHQITVRDGKGRKDWVTVLPKKLFKPLQVQLKTV 191

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------- 269
                               L          F                            
Sbjct: 192 KALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKRAIDPSSGVVRRHHLSET 251

Query: 270 --SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K    KAG+NK  S H  R   AT   + G     +    G K V+    YT  
Sbjct: 252 ALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311

Query: 326 ADR 328
            +R
Sbjct: 312 LER 314


>gi|256964200|ref|ZP_05568371.1| phage integrase [Enterococcus faecalis HIP11704]
 gi|256954696|gb|EEU71328.1| phage integrase [Enterococcus faecalis HIP11704]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 109/368 (29%), Gaps = 54/368 (14%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + + ++G+  +YF+         G  +                  AL     + +   
Sbjct: 2   IKQYKKKNGEKAWYFKTYLGTDPLTGKKKYTTKRGFRTQKEAK---IALARLEMEIQKNG 58

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P     T + +   + ++        +   +   +   I+   G  +  KI+T + +  
Sbjct: 59  IPSSTNITFQEVAFMWLENYKNTVKESSYSRTEIIFRKHILPSFGKIEISKISTAYCQKI 118

Query: 123 VESRKHTPSSAIQ--FLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V +     SS     F+  M  +FK+        Q  V        +      + I+ +T
Sbjct: 119 VNTWHSEGSSKQYPLFINYMNQVFKFAINIGVTNQNPVINVIVPKNQDIITSEKKIKFYT 178

Query: 176 KEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
           K+ +Q F              +    F  L +SG R  +        L            
Sbjct: 179 KDQLQIFLKSIEQSESTYITIRDYTLFRLLAFSGCRIGELLALTWDDLNIKTGELQINKT 238

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------- 266
                +   S   +   +  T+ L    + +L    + ++ + +     + +        
Sbjct: 239 IAKSDHYYVSNTPKTKKSNRTLILDAKTITILKKWKLEQKKYLLKLGYTQPSRIFTNEEN 298

Query: 267 -----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                   +  +     KA +     HG R   A++   AGA   E     G   +    
Sbjct: 299 EFTINQAITDRYNIYRKKANLPNIGLHGFRHTHASLLYYAGADHKEAQERLGHANIKTTL 358

Query: 320 ETYTKGAD 327
           +TYT   +
Sbjct: 359 DTYTHLTN 366


>gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
 gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170]
          Length = 331

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 57/304 (18%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQII---------------------------------R 104
           Y KS     L+  +   +       I                                  
Sbjct: 16  YLKSIRA--LSEKTISEYHYDLINFISYQILRKVYFDDKEKFDYDLKKSNIDSNKIFNQA 73

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163
              D + + +   +I           S+  + ++++R  +K+     E +  N    +  
Sbjct: 74  FINDINIQDM-YSYISYLDNELNDNTSTRSRKISALRSFYKYLHQEIEIIDNNITEKLRN 132

Query: 164 PKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           PK +       T  + +        +      ++        L +G+R S+     ++ +
Sbjct: 133 PKIQKRQPVYLTLSETEHLLEIVSQEKNEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDI 192

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQ 268
           +++ FSI  +      T+ L    + L+      ++ +         FI+  KQ+++   
Sbjct: 193 KDDHFSIIGKGN-KERTIYLTKNCIDLIKNYIKIRKKYLKDKKIDALFISTRKQRISNRA 251

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
                +    KAG +    S H +R  +AT+    G      L    G ++V   + YT 
Sbjct: 252 VQSTVEKYLEKAGFDTKIYSTHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTH 311

Query: 325 GADR 328
             D 
Sbjct: 312 LDDE 315


>gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli]
 gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 372

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|126699683|ref|YP_001088580.1| integrase [Clostridium difficile 630]
 gi|115251120|emb|CAJ68951.1| putative integrase [Clostridium difficile]
          Length = 370

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 6   RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 66  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N   S++ P+ K      + +E M +      + 
Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIKAPRYKKFKNEIYDREQMIKLLDLA-KN 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361

Query: 339 ISSVV 343
           IS  +
Sbjct: 362 ISESL 366


>gi|330988880|gb|EGH86983.1| integrase family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 325

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 104/314 (33%), Gaps = 15/314 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G      RK     +             + S + G   ++ ++++   + TTLK  +  
Sbjct: 9   NGTWRTKIRKKGYPSLS-ASFDTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQALDR 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +             +          K G     +I +  +    ++R     + ++  
Sbjct: 68  YEREVSAQKKGARQEKT--RIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125

Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQ 191
             L  +  L+  A++   +    NP   +  PK   E  R  T +++       S   ++
Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVTKLRMPKGSRERDRRPTAKELSAVLKAASAIHAE 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  E  + + +R  +      +H++     ++  K G+   V L      LL   P  
Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMAT 310
            +    +      +    S +F      A  ++   H +R    +   + G +  E  + 
Sbjct: 246 IDGGVFSL-----SPHSVSQYFLKSCRAAKVIDLHFHDLRHEGTSRLFEKGFSIMEAASI 300

Query: 311 YGWKTVDQAETYTK 324
            G KT+   + YT 
Sbjct: 301 TGHKTMSMLKRYTH 314


>gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 151

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 1/141 (0%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+ + +LP FV +E+TRHGKIIYYFRKG   R RLP P + +F+PAY+SAL+G   ++  
Sbjct: 1   MSRNTKLP-FVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSS 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           I    K+P T++WLI +YRKS HW SLA+ +R   +  F  II+ SGDF+Y+KIT KHIR
Sbjct: 60  IKPVIKEPQTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIR 119

Query: 121 SGVESRKHTPSSAIQFLTSMR 141
            G+E RK TP+SA+ FL+S+R
Sbjct: 120 LGLEHRKSTPASAVLFLSSIR 140


>gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
 gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia
           extructa W1219]
          Length = 327

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 17/280 (6%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
              E     +         +  +  +      +  S   +++  + ++ +    D + I 
Sbjct: 37  EVIEKQQQEKNSEQNF---VELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-KKDVKHIV 92

Query: 116 TKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T  IR       + +K +  +       +   F W   ++Y+  +P   + + K  T   
Sbjct: 93  TDDIRGYLTDYQKKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIK 152

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTG 230
             ++ E ++  +   +E  +     + L  +G+R  +        +  N    I   K  
Sbjct: 153 ETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGS 211

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGV-N 283
               V         L      +            +           +  +    + G+  
Sbjct: 212 KERVVYFDARTKIHLQNYLGSRTDDNPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQK 271

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H  R+  AT++ D G    +L    G + +D    Y 
Sbjct: 272 VHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311


>gi|325478372|gb|EGC81487.1| site-specific recombinase, phage integrase family [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 374

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 102/351 (29%), Gaps = 33/351 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G   +Y R  +          +         AL          +       + + 
Sbjct: 4   YRDESGNKTWYCRFYYTNWKGEKLTKKKRGFSTKKEALKWEQEFLNQHSESI--EMSFRE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK----- 127
               Y++      +  N+  + E+  +Q I+   GD    +I    I             
Sbjct: 62  FFEIYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMKIKDK 120

Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
               ++P+        +  +   A R   +  N    V     K  + +  WT+++ ++F
Sbjct: 121 NGKNYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDEYERF 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +  +   AFE L + GLR  +      +       ++K  ++             
Sbjct: 181 IEAIKDKPESFYAFELLYWCGLRMGELLALTEEKFDFKRHTLKIDESLQRIDGKNVITAP 240

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+ +P+     +             +     + +         + K+ V +  
Sbjct: 241 KTKKSIRTIVMPEFLNDEIKEYIESFYKLKPKDLIFNFSKSYLHHEMDRGSKKSQVKRIR 300

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
            H +R    ++  + G +A  +    G +++D    Y     + +  +   
Sbjct: 301 IHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPSKQKEMAFS 351


>gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 298

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 86/281 (30%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT 129
           LIS Y         L+ ++  ++++   Q    + D       ++T  +I          
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNSNYDNVESYIEELTQSNI---------K 55

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183
            ++  + +  ++V + +   Q  +  +P   +    + +    +    + ++        
Sbjct: 56  TNTLRRKIACIKVFYNYLKYQHIIEESPFNQLRFQFRTEKILPKTIPYDILKNIFSYLEQ 115

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                       +  +  L    LL +G+R S+ C   ++ +   N    I  +     I
Sbjct: 116 RVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175

Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     LL               F      + ++     +  K    +  ++K+  
Sbjct: 176 LFLGDQTTFNLLETYINKNGKESNDFLFPGKYSPKPLSEQSVRLILKKIVEQNSLSKTIT 235

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H  R   AT+  D       +    G  ++   + YT  +
Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7]
 gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7]
          Length = 359

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 116/356 (32%), Gaps = 48/356 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R    V   +  +GK  Y    G                 A          +   + +  
Sbjct: 13  RYEGRVYLGKDENGKRRYKSYYG---------------ATAEEVRRKHELTQFSAVPNIP 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T+  L +E+  S     +  ++  ++       II   G  +   + +K I   + 
Sbjct: 58  ASKMTIATLAAEWLLSVQNR-VKESTLENYRLKLKKHIIPSFGAMNCCAVGSKEIYGFMN 116

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++     +       L  M+ +FK+A R+     N    +  PK++++ +R  TK++  +
Sbjct: 117 AKIGNGLSSRYVSDILVLMKSMFKYAAREYG-FKNVFDGITMPKKQSKEVRLLTKDEENK 175

Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
            KS+ +E  +   +     +Y+GLR  + C      +  +  ++  +KT           
Sbjct: 176 LKSYITEKPTLAGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGG 235

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                            + +P+  +++L         F +    + M        F    
Sbjct: 236 KTKLIISEPKSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYRFSRLL 295

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG-ADRIR 330
            K G+     H +R   A+ + + G     L    G  +V+     Y     +R R
Sbjct: 296 KKLGLPHIHYHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKR 351


>gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209]
 gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209]
          Length = 308

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 29/296 (9%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR 126
              ++S + +      + + ++  ++ +           +G     +I    IR  +  +
Sbjct: 10  FNRILSAFNQHLRAERARSEHTIRAYSADVESLMYYAIAAGVRSIDEIDLATIREWLGEQ 69

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+  +   S R L  WA+R+E ++++P L ++ PKR+        +  M +  
Sbjct: 70  SSDGLARSTLARRAASTRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARML 129

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                      +   +     E L  +GLR  +     +  L     ++    K     +
Sbjct: 130 ADLASAAEEGSAAALRDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERS 189

Query: 235 VELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN- 283
           V       + L          F                +++  Q      ++    G   
Sbjct: 190 VPFGQPAARALQAWLQTGRPAFYREGSGAALFLGTRGGRIDQRQIRSVVGSRFVALGDTS 249

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
             S H +R  +AT   D GA    +    G  ++   + YT    DR+R   + + 
Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAH 305


>gi|330891180|gb|EGH23841.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 357

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 101/333 (30%), Gaps = 25/333 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK     +             +         +  YI     +  TL+  
Sbjct: 6   KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            ++    S   ++I   G +    ++ + I    + R        
Sbjct: 65  LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEKGRVG 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             + ++    L  +  LF  A+++  +    NP L++ +P       R  + ++ ++  +
Sbjct: 124 TTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRNRRLSADEERRLMA 183

Query: 185 FWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232
             +  S P L +     L +G+R ++        +                 +T      
Sbjct: 184 AVNRHSNPMLGWIVGIALETGMRSAEISTLRKPMVDLERRIVKLVDTKNDGQRTVPLSKR 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            T                    F      +K     F+  + +   + G+ +   H +R 
Sbjct: 244 ATELFKAAMANPARPGDCQLVFFGEPGKDKKRRPYAFTKIWGSLVKELGLSDFRFHDLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +   + G +  E+ A  G K++   + YT 
Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336


>gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 300

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 34/299 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           I  Y +        + ++  ++                       I +            
Sbjct: 6   IEAYLEMMAVERDASPHTLSAYARDLADAEASIDGGGLIAADEAAIEAWFAGLAPRGLSA 65

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           ++A +  +++R  +++A+ + +   +P   ++ PK+     R   +E++    +  +   
Sbjct: 66  ATAARRRSAIRQFYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGLLTASAARD 125

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
              G +     E    SGLR S+     V+ ++ +    I   K G      L     + 
Sbjct: 126 GAAGLRMIALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREA 185

Query: 245 LAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGV 289
           +               P     F        +   +F+      A  AG++    S H +
Sbjct: 186 VKAWLIARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVL 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R   AT   + GA    +    G   +   + YT            + R++ VV+   P
Sbjct: 246 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHV---------ATDRLTQVVNRHHP 295


>gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
 gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565]
          Length = 341

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 91/305 (29%), Gaps = 41/305 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSG 122
           L    +EY        ++ N+  S+   F  ++            +     IT K + + 
Sbjct: 10  LTAFFTEYL--IGERGVSPNTIRSYSESFSLLLNFLDEQVNIKADNLRLEHITRKTVLNF 67

Query: 123 VESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWT 175
           ++      K + ++  Q L ++R    +   ++   +     +   +    +   +   +
Sbjct: 68  LDWLQDTKKSSNATRNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVNYLS 127

Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            + ++   +     +    +       L  SG R  +        L+           K 
Sbjct: 128 IDGIKLLLAQIPINTKKGRRDLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKG 187

Query: 230 GTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                V L D  + LL               +   F N+  +K+  +  S         A
Sbjct: 188 RKKRIVPLQDEQVNLLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHA 247

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331
            +          S H +R   A     AG     +    G  ++   E Y +  + + R 
Sbjct: 248 RIQDPELIPEKISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKRE 307

Query: 332 GIKNS 336
            ++++
Sbjct: 308 ALESA 312


>gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 298

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 83/278 (29%), Gaps = 24/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
             L  ++R+        +V++  ++ +  ++++    +             I    +R+ 
Sbjct: 5   GDLCEQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAF 64

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +  R+       SA + L+++R   ++      +  +   P +    P+  +        
Sbjct: 65  LTVRRMDGIGNVSAARELSAVRGFLRFVGGEDARVPMLKGPRVKRGLPRPVSPDEAVALA 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            D+ +       G++       L  +GLR  ++       L        T K G    V 
Sbjct: 125 GDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMGLTGAVLPLGETLRVTGKRGKTRIVP 184

Query: 237 LPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           L       +                 F       ++        +    + G+    + H
Sbjct: 185 LLPQVRSAIDAYVALCPFGAERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSDRTTPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT     GA    L    G  ++   + YT  
Sbjct: 245 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHV 282


>gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25]
 gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25]
          Length = 333

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 97/333 (29%), Gaps = 25/333 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G  + +     GRR         T   A   ++               +  T+  +
Sbjct: 8   RLRGGYCVTWTDPDGGRRRYKLDATTPTEAEAEARSIFHQAAA--------ARALTVSDI 59

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
            S YRK      +  +   +       I+   G  +  +ITT+  R  VE R+       
Sbjct: 60  WSAYRKDKAGRRIDHHMIDT----GKTILPVFGALEPHQITTQDCRDYVEKRRAIGRKDG 115

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  +R    WA +   +       +ERP   +   R  ++ ++ +  S       
Sbjct: 116 TIRTELGHLRTSLSWAEKHRMI--EHAPHIERPAMPSPKERYLSRAEIDRLLSVDG-DPH 172

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAM 247
            RLA   +L +  R           +      I  +           V   +  ++   +
Sbjct: 173 IRLAILLMLTTAGRVGAILELTWDRVDMIRGQINLRLEGEGPRKGRAVVPINNTLRAALV 232

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                       +            F+    KAG+   + H +R  +A    +AG    E
Sbjct: 233 AAKAHAMSEFVVEYAGGQIGSIKTGFRNACAKAGLKGVTPHVLRHTAAVHMVEAGVPILE 292

Query: 307 LMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           +    G         TY +   D +R       
Sbjct: 293 VAQYLGHSNPSVTFSTYGRFSPDHLRKAADALE 325


>gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 396

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 94/387 (24%), Gaps = 63/387 (16%)

Query: 11  VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTG-------STPKREYIN 62
           +     + G+  Y       GR   LP            + +         +    E   
Sbjct: 4   IQTRTNKAGRTTYRVGFYEDGRFQWLPALAHEAGAQRIKAIVEDPRQGPTVARRILEAQV 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
                  TL      Y +          +   +E+      + + G+     I  + +  
Sbjct: 64  DSAPGMPTLAEFFPRYIEHRGLR-CTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTVAE 122

Query: 122 GVESR----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            +  +                              +P +       +  +  +AV++  +
Sbjct: 123 WIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGFAVQEGIL 182

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP    + P    E  R                 S   L     L +G R  ++    
Sbjct: 183 PANPARGADLPDDDVEEERGIFSRAEWARFYAAMSESYQPLLIVL-LVTGARWGEATALQ 241

Query: 214 VQHLQNNIFSIKTQKTGT----------------IITVELPDGFMKLLAM----TPIGKE 253
           V+ L      I  ++                     T+ LPD  ++ L          + 
Sbjct: 242 VRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADEF 301

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
                              +K     AG+  + + H +R   A+ +   G  A  +    
Sbjct: 302 LLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQHRL 361

Query: 312 GWKTVDQAET-YTK-GADRIRLGIKNS 336
           G +++      Y     D  R  +   
Sbjct: 362 GHESLQTTSRVYAHLLLDAQRAAVDAI 388


>gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63]
 gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
 gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08]
 gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07]
          Length = 304

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 22/278 (7%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128
            +I  Y         L+ N+  S+     + +        +   I    I S +   +  
Sbjct: 2   DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLIDIVENDIISYLIKLEKD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + ++S++    +         NP   +++PK K E I   T+E++++  +F 
Sbjct: 62  NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241
              +    + +  FE L  +G++ S+     ++ +  +I  I           + L D  
Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKSQRVIPLCDIT 181

Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
              L               +         Q+          K  +  A ++K+     +R
Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A    + GA    +    G   +   + Y    D+
Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTV 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 121/383 (31%), Gaps = 51/383 (13%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            +T+ + ++G  +Y         +  G++++       T       A       +   ++
Sbjct: 2   RITEVKKKNGTTVYRASVYLGVDQVTGKKVKTSVTG-RTRKEVKSKAQQAQIDFKLNGST 60

Query: 64  PRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            +K       + L   + +S     +   +  +  S     I    G+    KIT   I+
Sbjct: 61  IQKAVMVKNFQELADIWLESYKLT-VKPQTYEATLSNLRTHIYPVFGNRQLDKITASDIQ 119

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +        + +   + +R +F+  +  + V  NP   +  P+R+ +      K    
Sbjct: 120 VFINQLSRYFENFVTIRSIIRRIFQQGILLQLVTNNPARDIILPRRQKKADDNKVKFIAP 179

Query: 181 QFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                + +                + +  LL +GLR  + C      +  +  +I   KT
Sbjct: 180 DDLKAFLDNLEKKQYKRYGLYYEYVLYHLLLSTGLRIGEVCALEWTDIDLDKSTITVNKT 239

Query: 230 GTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQ 268
                             T+ +    + +L +    +   F     +             
Sbjct: 240 YNKGLKAVSTAKTKSANRTISIDKKTVNMLRLYKNRQRQLFFETGARAPSVVFATPTREY 299

Query: 269 FSIWFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           F +  +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    + 
Sbjct: 300 FDLAIRQSALDTRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDI 359

Query: 322 YTK-GADRIRLGIKNSRRISSVV 343
           Y+    D+ +  +    +  S +
Sbjct: 360 YSHLSRDKEKEAVAYFEKAISSL 382


>gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 470

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 81/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           +  ++ +  +      +  +   + +  ++++          ITT  IR       E  +
Sbjct: 193 EQFLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SMAICHITTSDIRTYLSDYQEEHQ 251

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+A +P   + + K  +      + E ++Q      
Sbjct: 252 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 310

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     +FL  +G+R  +  +   + +  +               V         L 
Sbjct: 311 TNKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 370

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+           ++   ++  +   +  +       + K   H  R+  AT++ D
Sbjct: 371 QYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAID 430

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 431 KGMPIEQVQRLLGHVRIDTTLHYA 454


>gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
 gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S]
          Length = 305

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 83/295 (28%), Gaps = 28/295 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             LI  + +        + N+ +++ +         G         +         +   
Sbjct: 5   AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLS-SATRDRLAELTTAWAELAA 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--------- 181
           SS  +  +++R  + +   +   A NP  ++ RP  +    +  + +++           
Sbjct: 64  SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSLFALIAGKL 123

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             +       +     E L  SGLR ++      + L ++   +  +  G    +     
Sbjct: 124 AVEHPAPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGARERLVPISD 183

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFS 293
             +      +               +    I                    S H +R   
Sbjct: 184 RARAAVAAWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHAF 243

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           AT   + GA    L +  G   +   + YT    R         R+  +V+S  P
Sbjct: 244 ATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSR---------RLVELVNSRHP 289


>gi|16271777|ref|NP_438114.1| integrase-like protein [Temperate phage phiNIH1.1]
 gi|16156169|gb|AAL15043.1| integrase-like protein [temperate phage PhiNIH1.1]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%)

Query: 11  VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y  R         G+++R       T   A  + +      +      
Sbjct: 2   IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120
               TT   +   + +     ++  ++    +  +++         G     KIT    +
Sbjct: 62  SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 117

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             V    +++  +   +L+    +FK+AV    +  NP     R K   + +   TK+  
Sbjct: 118 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 175

Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
            + +           E  + RL +  L Y G R  +                        
Sbjct: 176 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 235

Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                       K          +             +    +       +         
Sbjct: 236 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 295

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
              K G+ + + HG R   A++  +AG  A       G   +      YT  +   +   
Sbjct: 296 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 353

Query: 334 KNSRRISSVVD 344
             + +++ +V 
Sbjct: 354 NVADKLAELVA 364


>gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54]
          Length = 324

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 85/298 (28%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVESRK---H 128
           ++ + +        + ++   +         + +       ++   HIR  V        
Sbjct: 14  MAAWLRHLESNRRYSPHTLDGYRRELGFLHALAERAKLPLERLGNGHIRQFVARLHAQGR 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            P S  + L + R  ++W      +A NP   V  PK      +  + E  Q        
Sbjct: 74  GPRSLARTLAAWRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDRAPA 133

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                    + +  FE L  SGLR S+     +++ ++  +  +                
Sbjct: 134 KVATEPAALRDQAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEVIVLGKG 193

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276
           G   +V +    +  L      +                      ++++     +     
Sbjct: 194 GKRRSVPVGQAAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQLQLAHV 253

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 254 AQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR-LDFQHLA 310


>gi|228476251|ref|ZP_04060953.1| integrase [Staphylococcus hominis SK119]
 gi|228269654|gb|EEK11156.1| integrase [Staphylococcus hominis SK119]
          Length = 348

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 101/335 (30%), Gaps = 19/335 (5%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           VTK + +      Y  +    +  +       T   A  +A        +          
Sbjct: 6   VTKRKNKTSTSWQYDVKHPSFKSGKKRKSGFKTKAEATNAAQQLIRDLED--GKQVDSNR 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128
             K    E+ K      L+   +  +E   D  ++  G D   + IT    +  + +   
Sbjct: 64  LFKDYYKEWLKLNGKYELSSKQQYWYEHSLDLFLKHFGEDIKIKDITRSEYQKFISNYAQ 123

Query: 129 TPSS-----AIQFLTS-MR-VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +S        +L+S ++  ++   ++++          ++   K E ++  T    ++
Sbjct: 124 GRTSETVRKVNLYLSSGIKDAVYDGYIKKDPTYNVKAKGTKQ--AKKEDVKFLTIRQYEE 181

Query: 182 FKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
            +  +   +       ++L  +G R S+  R     L      I    T T       + 
Sbjct: 182 LREHFKLRTDKSTIMLYILLITGARFSEVNRMTYDDLLITKGLIHLPGTKTENADRFVEV 241

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
               L       ET     D +  +      S  F     K  +  + + + +R   A+ 
Sbjct: 242 SKNDLKHIYKAIETHPHRIDNKLFSLSHAAISKVFNKAKKKYNINEDVTPYSLRHTHASY 301

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
               G     +    G  ++    + YT   D  +
Sbjct: 302 LISKGIPIEYISKRLGHASIAITLDVYTHLLDEHK 336


>gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
 gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema
           phagedenis F0421]
          Length = 255

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 21/216 (9%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + + ++   +++ + +     NP  ++E P+R+    R  + E++          
Sbjct: 14  GKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPEEVDLLLDSIPLN 73

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
           S    + R  FE +  +GLR S+     ++ +  +      T K      V       + 
Sbjct: 74  SPNGIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGKGSKERIVPFGKQAKQQ 133

Query: 245 LAMTPIGKETFFINNDK----------------QKMNATQFSIWFKAKATKAGVNKSAHG 288
           L     G    FI                    ++++        +     +G+N   H 
Sbjct: 134 LQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKRLQEIEVISGINTKVHT 193

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT     GA    +    G   +   + YT 
Sbjct: 194 LRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTH 229


>gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 282

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 21/273 (7%)

Query: 76  SEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            +Y     ++    +L   S   +++Y    +         ++T + +R  + ++K    
Sbjct: 3   EKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDDGL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++   + +++R  ++       + +               +      D        ++
Sbjct: 62  KATTLNLYNSAIRFFYR-----NVLHVLWDDITVPRMIIEHKLPTILSTDEIDRLLDATD 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +  F  +  SG+R S+        +   N    ++  K        L +  + LL 
Sbjct: 117 DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLT 176

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV-NKSAHGVRKFSATISADA 300
                K          +      +        +  A+ AG+   + H +R   AT   + 
Sbjct: 177 EYWFQKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQ 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           G     + A  G +     E Y   +++  +GI
Sbjct: 237 GVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269


>gi|315172125|gb|EFU16142.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 383

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 113/356 (31%), Gaps = 43/356 (12%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++ + G   Y   ++   GR         ST   A ++A        +  +    +    
Sbjct: 12  KKLKSG-WQYRVSYKDKDGRYKTKSGNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-F 69

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 + +    G L+ ++        D   +   D   +++T +  +  +     T +
Sbjct: 70  HEYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHA 129

Query: 132 SA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           +A   +  T MR   K A+ +  +  +P   V+   +K          + Q+      E 
Sbjct: 130 TASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEI 189

Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------ 230
                     R    F + +G R S+        +     ++K  KT             
Sbjct: 190 LEGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTK 249

Query: 231 ---TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFK 274
              +   + + D  + LL    + ++ +++             N++ + ++ T  +   +
Sbjct: 250 NYQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLR 309

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
               K G    + HG+R   A+I    G     +    G K +    +TY    D 
Sbjct: 310 KFCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 365


>gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
 gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium
           carboxidivorans P7]
          Length = 329

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 85/263 (32%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKH 128
              + +  +      +  S   ++S  + ++R  G    + ITT+ +R       +    
Sbjct: 53  DYCNIFICAKRVEGCSEKSIKYYKSTIENMLRTLG-KPVKHITTEDLRGYLAEYHKRSSC 111

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  S       +   F W   + Y+  +P   + + K        +T E+++  +    E
Sbjct: 112 SKVSIDNIRRILSTFFSWLEDENYILKSPVRRIHKIKTGKIVKEVYTDENLEIMRDSCKE 171

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  +  +  N    I   K      V         L  
Sbjct: 172 -IRDLAIIDLLNSTGIRVGELVKLNIDDIDFNERECIVEGKGDKQRRVYFDARTKIHLQN 230

Query: 248 TPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
               +                ++N +   I  ++   K  +NK   H  R+  AT + D 
Sbjct: 231 YINSRVDNNRALFVSLIEPYNRLNISGVEIRMRSLGKKLNINKVHPHKFRRTLATRAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739]
 gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
 gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 28/281 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH--TPSSA 133
           Y ++      + ++  ++ +   Q               +   +R+ +         +S 
Sbjct: 18  YLRTE--RRASPHTVKAYLTDLSQYAAYLAGAGQGVVPSSPALVRAFLARAAGEAGATSL 75

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189
            + L+++R L+++ VR+   A NP  SV  PKR     +   +E++    +  +      
Sbjct: 76  GRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEEVAALVEAPELAAPLE 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IIT 234
            + R   E L  SGLR S+     +  +  +   ++                        
Sbjct: 136 QRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGKRNKERIVPFGASAGEAVRRY 195

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
           ++     +         +E  F+N    +++    +          G+ +    H +R  
Sbjct: 196 LDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLDRWVLATGLPRHVHPHVLRHC 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 256 FATHLLGNGADLRGIQELLGHASLSTTQRYTH-VDWKRLAA 295


>gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630]
 gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26]
 gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932]
 gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255]
 gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55]
 gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34]
 gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79]
 gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291]
 gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like
           [Clostridium difficile]
 gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196]
 gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291]
          Length = 304

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 22/278 (7%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128
            +I  Y         L+ N+  S+     + +        +   I    I S +   +  
Sbjct: 2   DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + ++S++    +         NP   +++PK K E I   T+E++++  +F 
Sbjct: 62  NVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
              +    + +  FE L  +G++ S+     ++ +  +I  I           + L D  
Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181

Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
              L               +         Q+          K  +  A ++K+     +R
Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A    + GA    +    G   +   + Y    D+
Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|331084257|ref|ZP_08333362.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401792|gb|EGG81369.1| hypothetical protein HMPREF0992_02286 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 363

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 107/362 (29%), Gaps = 43/362 (11%)

Query: 18  HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G       Y      R+ +             +         +   + +      + + 
Sbjct: 9   NGTWYVMARYVNWKGERKQKCKRGFATKREAQEW--------ERMFKLQTSSDLDMSFEA 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126
               Y        L  N+ ++ E     +I+   G     +I+TK I +           
Sbjct: 61  FTELYINDVKNR-LKENTWLTKEHIIRTKILPYFGKLKISEISTKEIITWQNEMLAYRDE 119

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182
           K  P S          +  +F  AVR   +  NP   V    R+       WTKE+ ++F
Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGREEHKEMLFWTKEEYKKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AFE L + G+R  +           +  ++   K+             
Sbjct: 180 SFEMMDKPVSFYAFEMLYWCGIREGELLALTPADFNFDKETVTINKSYQRLKGQDVITSP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+++P    + +             +    +  +         A  AGV +  
Sbjct: 240 KTKKSNRTIKMPKFLCEEMKEYLGMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R    ++  D G +A  +    G +++D    Y       +  I+ + ++  +   
Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--IEMAEKLDDLGKG 357

Query: 346 DD 347
           D 
Sbjct: 358 DF 359


>gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1]
 gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESLPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|255656037|ref|ZP_05401446.1| integrase [Clostridium difficile QCD-23m63]
          Length = 370

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 108/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 6   RKRNKNYVVYLEFEDKETGKRKQKNMGIFDKKREASKRLNEVKESLYKDGFLVPNEITVS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 66  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLN 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N    +E P+ K      + +E M +      + 
Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIR 243

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361

Query: 339 ISSVV 343
           IS  +
Sbjct: 362 ISESL 366


>gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1]
 gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1]
          Length = 385

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 99/360 (27%), Gaps = 55/360 (15%)

Query: 25  FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRK 80
           F+   GR  R+              Y   L  +     Y    + +   TL    + +  
Sbjct: 5   FQHADGREERVTKVSPVQTRRGAEQYERELRNALLNGTYGKEKKSEGRVTLAEFSARFLT 64

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131
            +   +   +S I+ +      I+   G+    +I    I       +   S        
Sbjct: 65  YSENNN-KPSSAITKQQILRDHILPFFGEMALVRIGPAEIEDFKALMRKKKSASRARKED 123

Query: 132 --------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                               +    L+++  L   A   + +         +   K    
Sbjct: 124 ATRAAIGKRKDGEAKPLSLKTINNVLSALSKLLNLAEEXKVIKQ---APRVKLFGKLPKP 180

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +       +  +   +   + R      L +GLR  +        L  +   +  ++T  
Sbjct: 181 KFDFLTFEEAGRLIDAAEPEWRTLMLVALKTGLRQGELIGLQWADLDLSRGMVTVRRTIW 240

Query: 232 I-----------ITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATK 279
                        TV+LP   ++ L           F  +D Q + A + +   +     
Sbjct: 241 RGVTDLPKGGRERTVDLPASAVEALKAHRHLRGRFVFCQDDGQPLTAGKTAQPLRRALKM 300

Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
           A + +       H +R   A+  A  G     +    G  T++  E Y   + D  R  +
Sbjct: 301 ADIGREEGRIGWHDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360


>gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1]
 gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1]
          Length = 332

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 31/293 (10%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           Y   A  G L+  +  ++     +     ++ G     +IT+ H+   ++  + T  P S
Sbjct: 34  YLLMAKVGQLSPATISNYRYMCGKFVDFCQEHGVTKPAQITSIHLGLFLQQLQLTNGPQS 93

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSE 188
              +   +R    W      + ++P   V  PK   + I+P+T+E  Q+  +       E
Sbjct: 94  VTDYFKQIRPFINWLKDNGQITVDPLKQVRLPKVPRKVIQPFTQEHCQRLLALVSGETFE 153

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLL-- 245
             + +     LL +GLR  +        +  +        K      V +     + L  
Sbjct: 154 DKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIGPKVQRALLE 213

Query: 246 ---------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
                           +     +T + + +   +              +AG+     S H
Sbjct: 214 YQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAGITNIRCSPH 273

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             R   AT+    GA   E+ +  G  T+ Q   Y    +   + ++  ++ S
Sbjct: 274 TFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLNSE-VAVQGHKKFS 325


>gi|296450534|ref|ZP_06892288.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296879344|ref|ZP_06903339.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
 gi|296260609|gb|EFH07450.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP08]
 gi|296429887|gb|EFH15739.1| phage integrase family prophage LambdaCh01 [Clostridium difficile
           NAP07]
          Length = 380

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 108/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 16  RKRNKNYVVYLEFEDKETGKRKQKNMGIFDKKREASKRLNEVKESLYKDGFLVPNEITVS 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 76  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPIHIQNYIDKLSYKLN 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N    +E P+ K      + +E M +      + 
Sbjct: 135 PQSIKIHINILKLAIKRAYRLKLIKENVMDGIEAPRYKKFKNEIYDREQMIKLLDLA-KN 193

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 194 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSIR 253

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 254 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVISKKFKRFLEKN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 314 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 371

Query: 339 ISSVV 343
           IS  +
Sbjct: 372 ISESL 376


>gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
 gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase
           family protein [Selenomonas flueggei ATCC 43531]
          Length = 377

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 101/364 (27%), Gaps = 47/364 (12%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           + Y +R     +I                 L      ++       +  TL   ++ +  
Sbjct: 6   VRYNYRDPATGQIVRKKKRGFLRRIDAEEFLLQINKAQQEGVFLTPEKLTLSTYLNTWLS 65

Query: 81  SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------- 131
           S    ++  ++   +E+    ++I  +G  D + IT   I     +              
Sbjct: 66  SYAKVNVKASTYAQYEAIVKKRLIPWAGGCDIKAITPMQIDEFYATLLQQGRADGKGGLS 125

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWS 187
             S +     +      AV++  +  NP LSV    +  +        +  +    +  +
Sbjct: 126 AKSVLYIHRVLNEALGHAVQKGLLVKNPLLSVTNIPKAKKFKASAYSAEEIRSLLEAAAA 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------- 239
           E S  + A       GLR  +        +  +  SI   +    I  ++          
Sbjct: 186 ENSFWQAAIALAAICGLRRGECLGLKWSKIDFDSQSITIDEQVIEIHHKIHFSTPKSTES 245

Query: 240 ----------------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                    + L       +      +   +    F+  FK   
Sbjct: 246 IRTIHAPAEVFAILKRRKEELDQHKEWLGNAYDEHDLVLCRGNGSPIRPGNFTKAFKDFL 305

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
            +  +     H +R   A++   +G          G  ++   A+ YT    + +   + 
Sbjct: 306 ARHNMRTIRFHDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTK--EEA 363

Query: 336 SRRI 339
           + +I
Sbjct: 364 AGKI 367


>gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 317

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 30/279 (10%)

Query: 78  YRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAI 134
           Y +   +   L   +  ++    +Q           +   + I   +          +  
Sbjct: 22  YLEYCTYRKELDQKTVKAYRIDLNQYFTF---VACEEPDKEKIEEYITELHKKYKQKTVK 78

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189
           + + S++  + +    E +  +P   ++   ++   +      +  +       G     
Sbjct: 79  RKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLLNHMYGCLQQA 138

Query: 190 --------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDG 240
                    +     E    +G R  +      +++  N        K      V++   
Sbjct: 139 SETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGAKERYVQIGST 198

Query: 241 FMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
            +  +      +          FF+N    +       +  K    +AG+ +  + H  R
Sbjct: 199 SVLNILRKYYAENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQAGIERNITPHMFR 258

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT   + G     +    G  ++   + Y   A R 
Sbjct: 259 HSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARK 297


>gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
 gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC
           43063]
          Length = 323

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 81/290 (27%), Gaps = 41/290 (14%)

Query: 85  GSLAVNSRISFESYFDQIIRKS-----GDFDYRKI------TTKHIRSGVESR---KHTP 130
             L+  +  ++ +   +++        GD    +           IR+ + +      + 
Sbjct: 26  RGLSPQTVRAYLTDLRELMTFLVDSDSGDGPAAQQLRADLANPARIRAWLGAMSRAGMSR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
           ++  + + S R    WA  +  V  +   ++   +         +  D            
Sbjct: 86  ATLARRVASFRTFASWAQVRGIVPGDAGQNLRASRPDNALPTVLSATDAAHLLETARAAA 145

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
                        +   A E L  +G+R S+     + ++  +  +++          V 
Sbjct: 146 YPEASTAPNPVKLRDWAALELLYATGIRVSELTGLELGNINKSQRTVRVTGKGDKQRVVP 205

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAKATKAGVN- 283
                   L           +N +K  +N                         +A V  
Sbjct: 206 YGIPAGLALEEYLEKGRPALVNPEKPALNRVFLGAKGGMLDTRIVRGMLHRLTAQAEVPD 265

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              HG+R  +AT   D GA    +    G  ++   + YT  +      +
Sbjct: 266 LGPHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAV 315


>gi|225869605|ref|YP_002745552.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225699009|emb|CAW92097.1| integrase [Streptococcus equi subsp. equi 4047]
          Length = 355

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 93/355 (26%), Gaps = 36/355 (10%)

Query: 11  VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K R R  K  Y        G+ R              A    +     K         
Sbjct: 1   MAKFRKRGDKWSYRIYYTDSQGNKREKSKGGFKTKALASAAAIKVEAELNKDID------ 54

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              +L     ++ +      +   +  ++      I +  GD    K+T    +  +   
Sbjct: 55  -DISLYDFCKDWAEIYKRPHVVDKTWETYTKNLKHIKKYFGDIKLNKVTHTLYQKKMNVF 113

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  +  +F   ++   K AVR   +  N         +K    + +   +  ++ +
Sbjct: 114 ASKYAQETLEKFHYQIKGAVKVAVRDGLIKTNFAEGAIVKSQKEARAKEFDFLEEDEYLN 173

Query: 185 FWSEGSQPRLAFEFL-----LYSGLRCSDSCRAGVQHLQN---------------NIFSI 224
                S+      +        +GLR +++       +                      
Sbjct: 174 LIKVTSEKYQYISYFTLYIIAVTGLRFAEATGITWSDIDFEKGFIDINKSFDYSKTQEFK 233

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           +T+   +   + +    +KLL             N      +              G   
Sbjct: 234 ETKNEQSKRQIPIDQQTIKLLRAFKENYYKENKLNRVLYGASNSLCNRLVK--KIVGRPV 291

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
             H +R   A+     G     +    G + ++   + Y    D+++     + +
Sbjct: 292 RNHSLRHTYASFLILKGVDLISISQLLGHENLNITLKVYAHQLDKLKEKNNQAIK 346


>gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22]
 gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171]
 gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606]
 gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736]
 gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736]
 gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605]
 gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196]
 gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113]
 gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076]
 gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401]
 gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486]
 gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22]
 gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171]
 gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606]
 gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615]
 gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407]
 gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431]
 gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str.
           493-89]
 gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H
           2687]
 gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010]
 gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1]
 gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
 gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v]
 gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736]
 gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  TRINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
 gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021]
          Length = 308

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 102/304 (33%), Gaps = 33/304 (10%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
           + ++S Y         LA N+  S+     + +      G   + +I    + + + + +
Sbjct: 5   EAVLSSYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGRVTFGEIAEGDVTAFLAALR 64

Query: 128 HT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      SSA + ++++R L ++A+R+     +P   V  P++     +  +  D+
Sbjct: 65  AGDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDV 124

Query: 180 QQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
           ++  +           + R   E L  +G R S++    V  +     + + +  G    
Sbjct: 125 ERLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRGKGGR 184

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKA 280
              V L     + L             + +            ++         +A A + 
Sbjct: 185 TRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAAAERG 244

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRR 338
           G+   S H +R   AT   D G     +    G  +V   + YT    D++R     +  
Sbjct: 245 GLAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHP 304

Query: 339 ISSV 342
            +  
Sbjct: 305 RARH 308


>gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
 gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149]
          Length = 336

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 75/316 (23%), Gaps = 43/316 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--- 106
           +T          +  +    L+  +  Y         L+ N+  S+    ++ +      
Sbjct: 1   MTEQRRTGAPDGAGAQPAPALRRAVRGYLDHLTVERGLSANTLASYRRDLERYLATLTDA 60

Query: 107 GDFDYRKITTKHIRSGVESRKHT----------------PSSAIQFLTSMRVLFK--WAV 148
           G  D   +    + + +   +                   +       ++R         
Sbjct: 61  GIGDLASVAAGVVEAHLARLRAGDDGHPPLAVSSAARAASAVRGLHRFALREGLAGADPS 120

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           R       P                 T   +           + R   EFL  +G R S+
Sbjct: 121 RDVRPPAPPRRLPRALAVDQVVRLLETAGPVTAAGDGAPLALRDRALLEFLYGTGARISE 180

Query: 209 SCRAGVQHLQN---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +  A +  L                     +                    L     G  
Sbjct: 181 AVGAAIDDLDGLDTGEATVLLRGKGGRSRLVPVGGYAAEALRAWLVRGRPALVAAGRGTP 240

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHEL 307
             F+N     +         +  A +AG+        S H +R   AT   D GA    +
Sbjct: 241 AVFVNVRGGTLTRQGAWTILRRAAERAGLPVDGANAVSPHTLRHSFATHLLDGGADVRVV 300

Query: 308 MATYGWKTVDQAETYT 323
               G  +V   + YT
Sbjct: 301 QELLGHASVTTTQVYT 316


>gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017]
 gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431]
 gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327]
 gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74]
          Length = 341

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 278

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 70/255 (27%), Gaps = 28/255 (10%)

Query: 97  SYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145
                +I                 K++   +RS   SR     +A    + L+ +R  FK
Sbjct: 2   RDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFK 61

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFE 197
           +      +      S+ RP ++    +  +  +++                  +      
Sbjct: 62  YIKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEPWVVKREIAIVV 121

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            L  +GLR +++    V  + N      T K      V +     K +         F  
Sbjct: 122 LLYGTGLRITEALNLKVSDISNESLI-VTGKGDKQRQVFILPVVKKCIQKYIKACPHFDE 180

Query: 258 NNDKQ------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMA 309
                      K+  T  +   +       +    S H  R   AT           +  
Sbjct: 181 AGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQ 240

Query: 310 TYGWKTVDQAETYTK 324
             G  +++  + YT 
Sbjct: 241 LLGHSSLETTQVYTH 255


>gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4]
          Length = 250

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 80/233 (34%), Gaps = 16/233 (6%)

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            D   +  +   + +  +K+  S+  + ++S++  +K+  +++ +  NP   V  PK++ 
Sbjct: 2   VDIEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEK 61

Query: 169 EGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                + +E++++          +  +     E L  +G+R S+     ++ +  +  ++
Sbjct: 62  RLPNFFYEEEIERLFDACKGDTHKDIRNLALLELLYATGIRVSECSNLSLKDIDFSFHTV 121

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFK 274
             T K      V       + +           +  + Q          +          
Sbjct: 122 LVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRHILN 181

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              ++A +      H +R   AT     GA    +    G   +   +TYT  
Sbjct: 182 DVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHV 234


>gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1]
 gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1]
          Length = 341

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 327

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             LI  +  +      +  S   + S     IRK  + + R ITT  +R+ +   +    
Sbjct: 50  SELIDSFLSAKRVEGCSDKSMHYYRSTLSNAIRKI-EKNIRHITTDDLRNYLNDYQQISG 108

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            T  +       +   F W   ++Y+  +P   + + K        ++ E ++Q +    
Sbjct: 109 ATKVTVDNIRRILSSFFAWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC- 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           EG +     + L  +G+R  +  +     +       I T K      V         L 
Sbjct: 168 EGIRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQ 227

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+                ++  +   I  +    +  + K   H  R+  AT++ D
Sbjct: 228 RYLAGRIDDNSALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAID 287

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G +++D    Y 
Sbjct: 288 KGMPIEQVQHLLGHQSLDTTLQYA 311


>gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 89/291 (30%), Gaps = 26/291 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT-------KHIRSG 122
           L+ +I EY            +  +      Q+ R    +    ++         +++R+ 
Sbjct: 3   LEDVIEEYLYHCMAKGFTQKTMKNKRQEMKQLKRFLMNEKRISELEAINTLHLKQYVRTK 62

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----D 178
            E     P S +     +R  F W  ++EY+  N    VE PK   + ++ +T +     
Sbjct: 63  HEE-GLQPQSIVAMSKIVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTVQEVSAM 121

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQK 228
           ++ F       ++ +     L   GLR  +      Q+++          N    +    
Sbjct: 122 IEAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETKILVNGKGNKERIMFISP 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
               I +         L    +  + +F++     ++        K    +  +     S
Sbjct: 182 PLKKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            H  R F A      G     L    G   +   + Y +  +   L  +  
Sbjct: 242 PHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDFELIKRAM 292


>gi|331007666|ref|ZP_08330803.1| phage like integrase [gamma proteobacterium IMCC1989]
 gi|330418532|gb|EGG93061.1| phage like integrase [gamma proteobacterium IMCC1989]
          Length = 398

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 98/352 (27%), Gaps = 27/352 (7%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+ +    +G++    R   GR   L            + A+       E   +   K  
Sbjct: 49  FIERRV--NGRVK---RISIGRYGHLTPSQAKLKAQEMLGAIAMGQNPAEERKATEAKSI 103

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL     +Y  +    SL   +  ++    +  +    +     I    +          
Sbjct: 104 TLSAAFEDYLNTR--KSLKAGTIQNYRYSVNCHLSDWLNRRLSDINKNMVEERHREIGQK 161

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P+ A   +  +R +F  A+ +   A    +    P  +    R W K D ++      E
Sbjct: 162 APARANNTMRVLRAVFNHAIAKYEDAAGKSVLSFNPVDRLGRNRAWYKIDRRRTVIKAHE 221

Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                           R  F FLL++GLR  ++       +     +     T       
Sbjct: 222 LPVFYQATEALSNEVSRDYFRFLLFTGLRKMEAATLTWSQVDFIAKTFTIPDTKNRDPHT 281

Query: 237 LPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKSAHGVRKF 292
           LP       L                 + N              A   G   + H +R+ 
Sbjct: 282 LPLTNHLYDLLQFRKVHSHSQWVFPSPRDNEKHLKEPRGSVAMVAEALGSPFTLHDLRRT 341

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
             TI+      A+ L      K        Y   +D  R+  +   +IS  +
Sbjct: 342 FITIAESLDIPAYALKQLLNHKNPTDVTAGYI-VSDVERI-REPMEKISGFI 391


>gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 341

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +       +      N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
 gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
          Length = 341

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|254383832|ref|ZP_04999180.1| phage integrase [Streptomyces sp. Mg1]
 gi|194342725|gb|EDX23691.1| phage integrase [Streptomyces sp. Mg1]
          Length = 426

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 113/399 (28%), Gaps = 72/399 (18%)

Query: 14  ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + + G+              +RIR+        +      +  S              +
Sbjct: 23  YQRKDGRWEAAGYVLAPGNTRKRIRVYGTTRKDAMTKLTEKIAASNRGLPVA----AADS 78

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   ++ +        L  N+   + +     +    G     ++TT+ +R+ ++  + 
Sbjct: 79  TVSAYLAYWLDGVAVHHLRENTHTRYAASIRLHLNPGLGVKKLARLTTRDVRTFLDGLRT 138

Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                      +P +       ++   + AVR++ +  N   +V
Sbjct: 139 TCQCCAQNRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +    +    +P T  + +Q     + G +    +E  L +GLR  +      + L  + 
Sbjct: 199 KTTTPRPRRFQPLTAAEARQLLHAAN-GDRLNALYELALRTGLRKGELLGLHWEDLDLDG 257

Query: 222 FSIKTQKTGTII-------------------------------TVELPDGFMKLLAMTPI 250
            +    ++                                     E      +    +  
Sbjct: 258 GTATIHRSLQRTRSQGLTVLNTKTLASDRRIALPTECLNSLKTHQERQQEERQTAGTSWT 317

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                F   + Q ++ T  +  F+     A +     H +R  +AT+  + G     +  
Sbjct: 318 DNGLVFTTPNGQPLDPTNLTRRFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKE 377

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSDD 347
             G   +      Y     R+RL  +    + S++   D
Sbjct: 378 LLGHAHIGVTAGVYAHV--RLRLQHQAIDTLGSILSPTD 414


>gi|190151416|ref|YP_001974327.1| putative integrase [Streptococcus phage PH15]
 gi|190014410|emb|CAQ57796.1| hypothetical protein [Streptococcus phage PH15]
          Length = 355

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 96/338 (28%), Gaps = 29/338 (8%)

Query: 15  RTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     Y   ++   G+  +       T   A  +A        E I +   K  +L 
Sbjct: 5   RKRDNGWEYRISYKDSDGKYKQKSKSGFQTKKLAQAAAREVEANLSENILT--DKDVSLY 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +        +   +  ++      I    GD   + IT  + +  +       + 
Sbjct: 63  DFVKTWSGVYKRPHVKDKTWETYTKNLKHIKIYFGDLKVKDITPLYYQKRLNEFGEKYAQ 122

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE 188
            +  +F   ++   K AVR++ ++ N     +   +         + +E         + 
Sbjct: 123 ETLEKFHYQIKGALKVAVREQLISYNFAEDAKVKSQIETRSEDNDFLEESEYTALIASTR 182

Query: 189 GSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
            +   +++  L     +G+R S++       +  N   I   K                 
Sbjct: 183 SNIQYVSYFTLYLLSVTGMRFSEALGLTWDDIDFNKGIIDINKGFDYSKTQDFGDLKNES 242

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           +   + +    ++ L           I N      +       K      G     H +R
Sbjct: 243 SKRKIPIDKITIETLKTYRKKYWQANIKNRVCFGVSNSACN--KLIKKLVGRPVRNHSLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
              A+     G     +    G ++ D   + Y+   +
Sbjct: 301 HTYASYLILKGIDIVTISKLLGHESPDITLKVYSHQME 338


>gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
 gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3]
          Length = 331

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 31/280 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I  +          +  ++ ++ +   Q+     +         +++ KHI++ +     
Sbjct: 31  IEAFLSWLAVQKGASDATQKAYGADLTQLAVFLREQGADLARPGEVSRKHIQAFLAWLFR 90

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                SS  + L ++R  F++ +R   V+ N    V  P+++    R    ++       
Sbjct: 91  RGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHPRALNVDETFALLDT 150

Query: 186 WSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
                           +     E L  SGLR S++    +   Q     ++         
Sbjct: 151 PKAAPPSEAHAARLLCRDLALAELLYGSGLRISEALSLDLDDAQLRSRVLRVMGKGSRER 210

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV--N 283
              L D   + LA     +    +  ++         ++N  + +        +AG+   
Sbjct: 211 LSPLSDTSCEALAAWLAERSYLALPEEQALFVGARGARLNRREAARIIAGLCRRAGLAFT 270

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            S H +R   AT    AGA    +    G + +   + YT
Sbjct: 271 VSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYT 310


>gi|270291611|ref|ZP_06197831.1| integrase [Pediococcus acidilactici 7_4]
 gi|270279930|gb|EFA25768.1| integrase [Pediococcus acidilactici 7_4]
          Length = 359

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 101/334 (30%), Gaps = 19/334 (5%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R +  + +        RR              + + +      +           T  
Sbjct: 5   EKRRKKYRAVVSVMDNGVRRKVSKTFPTKKEATEWATIMEA---DKFQNKKIIASSMTFA 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
                + ++     +  ++  +++S  + I +  G+    ++T   ++S ++        
Sbjct: 62  DWFKMWMENYKKSEVRESTYAAYKSDHNVISKYFGNTTLAELTYPLLQSTLDKIGKKKKQ 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFW 186
            S    +  +R   K A  ++Y+  +    ++    + +           E +Q +    
Sbjct: 122 GSVANLVIKIRASLKEAKYEQYIKSDIYSRLKPHGIRVDKKANVLSATEFEKLQNYLYQN 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFM 242
            + +    A    L +G+R  +      + +     +I          + IT       +
Sbjct: 182 YQNNLVNGAILVALETGMRIGEILALSSKDVSATFKTIVINKSLSHATSKITPPKNKHSI 241

Query: 243 KLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           + + +T     + +   +  +    +++               +   + HG+R   A+  
Sbjct: 242 RTIKITKELANVIESYGYHESRIFNVSSDTIRRNLDEIIELLNLTPITTHGLRHSHASYL 301

Query: 298 ADAGATAHELMATYGWKTVDQAET-YTKGADRIR 330
              G + + + A  G   V   +  Y       +
Sbjct: 302 LYRGISINYVSARLGHANVSITQRVYAHMLKEEK 335


>gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 92/281 (32%), Gaps = 27/281 (9%)

Query: 74  LISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS 121
           L   +R+            +A  +   +E+                D    +I+ + I  
Sbjct: 24  LFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEISRQFIED 83

Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                K       ++A ++L + + + + A+ + ++  +P L +                
Sbjct: 84  YEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLEDS 142

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +   ++  + G   T
Sbjct: 143 EIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKT 202

Query: 235 VELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--H 287
             + +  +     K+L      +           +   + + + K  A   G+ K+   H
Sbjct: 203 KIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTH 262

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             R   AT +   G +   +    G   V     Y +  DR
Sbjct: 263 VGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 303


>gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
          Length = 341

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 99/366 (27%), Gaps = 49/366 (13%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   +  + +Y FR         G  R IR             +  +       +Y  
Sbjct: 4   IIKYTNKDNETLYKFRFYAGLDEITGKQRYIRRQGFKSEKDAKTELLKIEYLVSTNQYFK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           S +        ++ E+         A   R       + +     D    KIT +H +  
Sbjct: 64  SVKSGK--FGDVLDEWLALHKETVKASTWRYIERRVKNHVRPYFKDMYVDKITLRHCQDF 121

Query: 123 VES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   P    Q ++ ++    +A+R   +  NP L V +PK++T           + 
Sbjct: 122 TNKAFAAAPVGFTQIISIVKNTLDYALRLGMIESNPMLYVIKPKKQTTISDKHGNYYNKD 181

Query: 182 FKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
                         +    F  L YSGLR  +        L     +I   KT       
Sbjct: 182 ELKKFLAAAKDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNG 241

Query: 233 ------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--- 265
                                   +     +   +LL +         +     K +   
Sbjct: 242 IKIQTPKTKASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIA 301

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                +     A K G+   + HG R   AT+   +G    ++ A  G   V      YT
Sbjct: 302 NETVRLAIHQIAKKTGIHPITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYT 361

Query: 324 KGADRI 329
                 
Sbjct: 362 HAIQDK 367


>gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
 gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri
           ES114]
          Length = 325

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 93/316 (29%), Gaps = 19/316 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +  +GK +      + +RIR      +          T +   ++     +    TL  
Sbjct: 4   RKQPNGKYLVEIYLPNKKRIR--KTFATQSEAKRFEQFTQTESIQKPWMPAKDDNRTLNE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           LI  +    H  +L+   +   ++    +     +   R+IT        + R  T S  
Sbjct: 62  LIELWYG-LHGQALSDGPKR--KNKLLAMSLMMKNPIAREITASDFSKYRQLRIETVSIK 118

Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188
           +A    T +  LF    R  E+   NP   +   K K   +   T E++     +     
Sbjct: 119 TANNDQTYLNALFNELKRLGEWNYNNPLAELRALKYKQPEMGFLTSEEITLVFDELEKCR 178

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                L  +  + +G R  ++       L  +  +    K     TV +     + L   
Sbjct: 179 NFDAYLISKICISTGCRWGEAESLTSTQLTPHRITFTHTKGNKHRTVPISKELYEELPKK 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                +  I           F +       +    +S H +R   A+     G     L 
Sbjct: 239 NGRLFSNCI---------KSFKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNILVLQ 289

Query: 309 ATYGWKTVDQAETYTK 324
              G  ++     Y  
Sbjct: 290 QILGHASITDTMKYAH 305


>gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 375

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 116/361 (32%), Gaps = 43/361 (11%)

Query: 11  VTKERTRHGKII----Y--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + +  ++HGK+     Y    + G   R +            + +         +   + 
Sbjct: 3   IKQVDSKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNK 62

Query: 65  RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           +  P   T+K L   + ++    ++  ++     + F+  II   GD     I    ++ 
Sbjct: 63  KTTPNVMTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTRVTDIRPLDLQR 121

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + + +       +    +R L   AVR + + ++P   +E PK + +  +     D+ +
Sbjct: 122 YINTMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDE 181

Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220
           FK         +     Q          +G+R  +      + +  N             
Sbjct: 182 FKAFVEVLDSQYKYINQQAYTLLRLGAMTGMRTEELLALQWEQVDFNGGYISIVQALGRG 241

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----I 271
                +    +   +  T+++ +  + +L+           N+                 
Sbjct: 242 FNGGTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNNDFVFNNQGKTLQVMRPNK 301

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           W    + K GV    S H +R   AT++ D GA+  ++    G   V    + Y+    R
Sbjct: 302 WLHDVSNKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361

Query: 329 I 329
            
Sbjct: 362 A 362


>gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda]
 gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase
 gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda]
 gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57]
 gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts]
 gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15]
 gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16]
 gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10]
 gi|63014370|gb|AAY25566.1| Int [Mus musculus]
          Length = 356

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  N   +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 78/288 (27%), Gaps = 24/288 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T + +I  Y  S         SR        ++     D D   +    +R  +  R+ 
Sbjct: 1   MTFEEVIDVYLASKTNR-----SRQRDLYALKRLRPYFSDRDLCVLKRADVRRYIAVRQA 55

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
                S+  + L        +   +      P   +            W           
Sbjct: 56  DGVQESTIQRELRVFSAAINFVRLEYDRPDLPNPVIRLAMSSGAARVRWISRQDADALVI 115

Query: 184 SFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVEL 237
                  +P L     L  ++G R ++  +     +  +           K G    V L
Sbjct: 116 CASRFARRPHLPNFIRLALHTGCRKNELLKLEWSRVDFDRAVLSLEPSDTKNGKRRVVPL 175

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            D  M  L             +            T     F+A   +AG++    H +R 
Sbjct: 176 NDEAMAALRHQRDWVRVTVPRSPWVFAVASGDRMTTIQKGFRAACLRAGIDDFRVHDLRH 235

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             A+    AG + + +    G  ++   E Y   A    +G +  R +
Sbjct: 236 TFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAP--HMGREAVRTL 281


>gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 398

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/364 (10%), Positives = 94/364 (25%), Gaps = 43/364 (11%)

Query: 12  TKERTRHGK--IIYYFR----KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYIN 62
            K R + G+    +          GR++ +              Y   L       ++  
Sbjct: 6   RKWRDKQGRQHERWMVHIEHTWPDGRKLTIRKVSPVQTKRGAERYERELRKQLFTGQWEE 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             +++  TL+  + E+       +         E      ++   G     KI  + I  
Sbjct: 66  GDKQQTPTLQGFVEEFLAYQRTIN-KPAVIRRKEGILRLHLLPAFGRHRLDKIDERMIDQ 124

Query: 122 GVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               R            P +  Q L  +  +F  A + + V   P + + + ++      
Sbjct: 125 YKVDRLATLTRTGSPFQPQTVNQHLKVLGRIFTVAKKWKLVREVPEIVLLKQRKSDFDFL 184

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QN 219
            + + +     +               + +GLR  +      +                +
Sbjct: 185 DFDETEAFLTGTAEHL-PDWHTYMVVAVRTGLRVGEMIALRWREDIDLQRGRISVNQSWS 243

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKA 277
                 + K+     + L       L    +  +   +   +     +            
Sbjct: 244 VENGFTSTKSDKRRELPLTWDARDALEAQRVRVQGKLVFPREGAPTHSAGTVQYAIDKIT 303

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD------RIR 330
               + +   H +R   A+ +   G    ++    G +++     Y   +         R
Sbjct: 304 EALEMRHLHNHVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKR 363

Query: 331 LGIK 334
           L  +
Sbjct: 364 LAPE 367


>gi|226325764|ref|ZP_03801282.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758]
 gi|225205888|gb|EEG88242.1| hypothetical protein COPCOM_03577 [Coprococcus comes ATCC 27758]
          Length = 366

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 96/346 (27%), Gaps = 42/346 (12%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+    G     +R    KG  ++ +           A+             +    K
Sbjct: 3   VYKD-NATGTWRVIYRFTNWKGERKQTQKRGFATKREAQAW--------EHEAMLKQGAK 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T       Y        +  ++  S       +I+   G+    +I  K I +    
Sbjct: 54  LDMTFASFFEVYEADKK-QRVKESTWESKSHIIRTKILPYFGNRKIAEIEAKDIIAWQNE 112

Query: 126 RK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWT 175
                      ++          +  +F  AV    +  NP            + +  WT
Sbjct: 113 LMAYRDEKGKSYSADYLKTIHAQLTAIFNHAVNFYNLPYNPARRAGTMGNEVPKEMDFWT 172

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
           KE+  +F     +  +   AFE L + G+R  +              ++   KT      
Sbjct: 173 KEEYLKFSEAMMDKPRSYYAFEMLYWCGIRSGELLALTPADFDFQKQTVTISKTFHRSKG 232

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                         T+++P    + +            N     +  +  +   +  A +
Sbjct: 233 SDIITSPKTKKSNRTIKMPPFLCEEMQEYIKMLYDIQPNERLFTVTKSYLNHEMERGAKQ 292

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AGV K   H +R  + ++  D G +   +    G +       Y  
Sbjct: 293 AGVKKIRVHDIRHSAVSLLIDMGFSVLAIGDRMGHEAEKITYRYAH 338


>gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 306

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 27/276 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR---KHTPSS 132
            Y  SA   +L   +  ++ +      +      +            +E R     +  +
Sbjct: 13  AYLISAEAHAL--LTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKT 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188
             + + ++   +++ + ++    NP   V+ P+R     R  + E +  F          
Sbjct: 71  IAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPG 130

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
           G + R  FE +  +GLR S++    +  +         T K          +     L  
Sbjct: 131 GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPFGEQACYFLMQ 190

Query: 248 TPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGVNKSAHGVRK 291
                   F +                    +++        +    ++GV    H  R 
Sbjct: 191 YIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRH 250

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT     G   H +    G   +   + YT   +
Sbjct: 251 SYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVEN 286


>gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 20/289 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK-----HIRSGVE 124
           L  L S+Y               + E   +   I   GD     +T +      I     
Sbjct: 88  LSDLGSKYLAHMQASGRTEKHIRNIEHLVNHVFIPVLGDKPVNDLTYQDDMVPFIIHFQG 147

Query: 125 SRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               T       +  ++   +  +F + +   + ++NP    ++PK +   ++  T +D 
Sbjct: 148 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKIWKKPKVQPWDMK-LTLDDA 206

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVEL 237
           ++  +      +  +   F L +    S+      + +     +++    KT T  TV +
Sbjct: 207 KKIMANAEPHLKWAMEVCFNLGTRPGESELLSLRWEDVDFKAGTVRIYASKTKTYRTVPI 266

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
              F+K L       +T ++     +   T     FK    +AG+N     + +R   AT
Sbjct: 267 NPEFLKRLEKEQAESQTGYVIEYMGRK-LTTIRKAFKNACKRAGINYPTRMYDLRHLFAT 325

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
                GA    +    G  TV     TY    +  +   +  R +  ++
Sbjct: 326 TLLRKGADLAAVSKMMGHSTVKMTADTYYHYMEGEK--ERAVRLLPELL 372


>gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14]
          Length = 356

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510]
 gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 293

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 93/265 (35%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127
             +     +  + +  + +S+     +            D+  +    +R  V +     
Sbjct: 4   DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  + F    T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
            + +++    +          FF+  + ++M   +  +  K   +K  +   +S H +R 
Sbjct: 184 RRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 407

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPVERQQNKETLELASKIRAEREQEFKESMLGYRLKKDRTVNFLDYYQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHT- 129
                    ++          ++      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALNRFKDFLKEQYPANEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC  V          +     +  Q       
Sbjct: 186 VGEGAKSIFQRFKKVVRYAIDHDVMLKDPCKGVTCKVDSQILRKDVLSPEEIQKLIACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPTVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                   +        K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPSYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 346

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 97/277 (35%), Gaps = 24/277 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----V 123
             T   L  ++  +    +L+  S + +++  +         D+ K+TT  IR       
Sbjct: 54  DRTNAELWKKFFLTKKAENLSDKSLLYYKNSLELFSLFI-KKDFLKVTTDDIRLYLAVER 112

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           E  +    S       +   F +   +EY++ NP   +++ K +      +T+ ++++ +
Sbjct: 113 EKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKKIKKVKGQKTEKTAFTQLELEKLR 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228
               E S  +   E L+ S +R ++     ++ +      IK  +               
Sbjct: 173 MAC-ENSLEKAMMEVLISSAVRATELANIKIRDIDFEKNEIKIIRKGNKEGVAFMSTIAA 231

Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
                 I+         L  +  +  + +       K+    F    K+ AT+A V    
Sbjct: 232 LAIKKYISERGNYNTPYLWIVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVENVH 291

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H  R+  AT++   G    E+    G + ++    Y
Sbjct: 292 PHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIY 328


>gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42]
          Length = 304

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 22/278 (7%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH- 128
            +I  Y         L+ N+  S+     + +        +   I    I S +   +  
Sbjct: 2   DIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKD 61

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  + ++S++    +       A NP   +++PK K E I   T+E++++  +F 
Sbjct: 62  NVSIATIARMISSIKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIERLLNFP 121

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241
              +    + +  FE L  +G++ S+     ++ +  +I  I           + L D  
Sbjct: 122 KLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDIT 181

Query: 242 MKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKS--AHGVR 290
              L               +         Q+          K  +  A ++K+     +R
Sbjct: 182 KLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A    + GA    +    G   +   + Y    D+
Sbjct: 242 HSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDK 279


>gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323]
 gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4]
 gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323]
 gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4]
          Length = 322

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 14/291 (4%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A +  L     K      PRK+  + K  ++++ ++      +  +   ++   +Q++ 
Sbjct: 18  AAQLKRLQEVMLKHLVEREPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLA 77

Query: 105 KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K      R+ITT+ +R  +   +       ++      ++   F W   ++Y+  +P   
Sbjct: 78  KV-IRPIRRITTEEMREYLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRR 136

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + + + +       T ED+++         +     + L  +G+R  +  R     +  +
Sbjct: 137 IHKIRAEKLVKNVITDEDIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFS 195

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWF 273
                          V         L      +E                       I  
Sbjct: 196 ERECVVFGKGDKERRVYFDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRL 255

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +    K  +++   H  R+  AT + D G    ++    G   +D    Y 
Sbjct: 256 RQLGRKLHLDRIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 403

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 119/400 (29%), Gaps = 64/400 (16%)

Query: 10  FVTKERTRHGK-IIYYFRKGHGR----------RIRLPYPHESTFIPAYMSALTGSTPKR 58
           ++ + + + G+   Y FR  +G           +  +P    +       +       + 
Sbjct: 3   YIERRKNKKGELTAYRFRVYNGYDVNGKQMVQFKTWVPPEGMTAKQAEKEAQRLAVLFEE 62

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E  +         + L  ++       +    +         +I    G     KIT + 
Sbjct: 63  ECAHGQVTATVKFQKLCEQWFGEYAELNHRSTTLQREHLLAGRIYPALGHLRIDKITARD 122

Query: 119 IRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165
           I+  + S              +  +    L+ +  +F++A+R + ++ NPC  V  PK  
Sbjct: 123 IQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMISTNPCSKVIIPKID 182

Query: 166 -----RKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                 K      +TKE  ++F +   E   + R+ F   +Y+G R  +      +++  
Sbjct: 183 ANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTGCRRGEILGIEWKNIDF 242

Query: 220 NIFSIKTQKTGT-------------------------------IITVELPDGFMKLLAMT 248
              +I    T                                        D +   L   
Sbjct: 243 ENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQDSYKANLGDK 302

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
               +  F   D   M+      W K +  +        H +R F A++  +AG     +
Sbjct: 303 WQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVEIEAGVDPTTV 362

Query: 308 MATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRRISSVVDS 345
            A  G  T      TY+   A+  +        +    D+
Sbjct: 363 AAMLGHSTPQTTLTTYSHYFAESKKRASNIVADVLEGKDA 402


>gi|219563220|ref|YP_002455812.1| integrase [Lactobacillus phage Lv-1]
 gi|215536987|gb|ACJ68924.1| integrase [Lactobacillus phage Lv-1]
          Length = 368

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 95/342 (27%), Gaps = 33/342 (9%)

Query: 15  RTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
           +  +G   +                 +      +S F     + +  G    R+      
Sbjct: 6   KNENGNWAFRAFWFEHSIDPVTGKTVLTRKSKFQSGFNTKRQAQIALGEFESRQAQGESV 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                      ++ K      +   +  +++    +I     +   ++IT    +S +  
Sbjct: 66  LANPPFFDYAEDFIKYNVENRVRPATLTAYKVALKRIESNFPNIPIKQITRSMFQSLLNQ 125

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQ 181
              K++ S+  Q       + K A+    V  +    V+ P++  +  +    +  D++ 
Sbjct: 126 LSIKYSKSTVNQTAVVFSQIMKLALADGLVVRDVTSFVQIPEKAQDKRKIDYLSLADVKT 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
             S   +         + + + +              +++       T            
Sbjct: 186 LVSHIKDNLNTTRVAPYFILTAIETGARLSELAALTWDDLTPTSITITKQRNRDGIVSKP 245

Query: 233 ------ITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                  TV +      LL    + K+   F   +    + +  +   K    + G+ + 
Sbjct: 246 KTESSVRTVSITKDLYNLLQDLKVNKKKLIFQQPNGIVPDPSSLNFALKRLMKECGIKRH 305

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
               H +R     +  +AG     +    G K V    E Y 
Sbjct: 306 GFHFHSLRHTHVALLLNAGVDILTISQRLGHKNVSTTTEIYA 347


>gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans
           Agy99]
 gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99]
          Length = 302

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 27/289 (9%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128
           + ++ E+ +        + ++R ++      ++        D R ++   +RS + +   
Sbjct: 6   EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             ++     +  ++++    WAVR+  +A +P   ++ PK          ++      + 
Sbjct: 66  AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236
                        + RL  E L  +G+R S+     +  +      ++   K     T  
Sbjct: 126 AKSSAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAP 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNK 284
                 + L              +        A    +  +   T             + 
Sbjct: 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDGAPDM 245

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 294


>gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii
           DSM 519]
 gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium
           sticklandii]
          Length = 308

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 92/278 (33%), Gaps = 26/278 (9%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--- 124
               E+        + +  +  S+ S F  +     +         +    IR+ +    
Sbjct: 13  EYFDEFLAYMTVERNASKFTISSYTSDFRILEEYLKERNMKVSIETLNVATIRTFIHFLR 72

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +++T  +  + + ++   FK+ V  EY+    NP   +  PK++ +     ++++++ 
Sbjct: 73  LEKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRT 132

Query: 182 FKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---TGTII 233
                 +       + +        +GLR  +      + +     +IK          I
Sbjct: 133 LLDTIMKTGGKDAIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGKKQRI 192

Query: 234 TVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286
                  +  LLA             FI ++ +++N    +  F+    +AG+     + 
Sbjct: 193 LPMPETLYQDLLAYMNNSLPITNTALFITSNNKRVNFRGMNNLFQKYIKRAGLSGKGYTL 252

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A++    G     +    G    +  + Y  
Sbjct: 253 HKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVH 290


>gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 291

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 26/290 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-------- 125
            I+EY         + N+  SF S   + +        +K   + +              
Sbjct: 3   WITEYENHLKTAQKSPNTISSFVSDVHEFVEWFAITYGKKFDCQVLEQDAREFRGFLLNI 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +  P++  + + +++   ++ V +      P   +         I+   + +  + K  
Sbjct: 63  LRRKPATINRKMAALKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKRA 122

Query: 186 WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIIT 234
                  +    +E L   G+R S+                ++  +   I+  K      
Sbjct: 123 IYAKGNKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKGSKYRE 182

Query: 235 VELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
             L       L      +           +  +         K     AG+++ S+H +R
Sbjct: 183 CPLNAQARSALDEYLKIRVSSSDNIFIGQRGPLGREAVDKILKKYCADAGIDRISSHVIR 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339
               T     G     +    G  +V+     Y       ++      ++
Sbjct: 243 HTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVHTPRADKIA--AVEKL 290


>gi|168238569|ref|ZP_02663627.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|219681195|ref|YP_002455840.1| Int [Salmonella enterica bacteriophage SE1]
 gi|318065905|ref|YP_004123763.1| Int [Salmonella phage ST160]
 gi|66473810|gb|AAY46456.1| Int [Salmonella phage SE1]
 gi|197288610|gb|EDY27987.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|289066891|gb|ADC81102.1| Int [Salmonella phage ST160]
 gi|321224985|gb|EFX50046.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 387

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F   +G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVNKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    ++ P+ K
Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E    +   EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINMEWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +++   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718]
 gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299]
 gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
 gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042]
 gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718]
 gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299]
          Length = 341

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 102/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +       +      N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|160934351|ref|ZP_02081738.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
 gi|156867024|gb|EDO60396.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753]
          Length = 357

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 110/359 (30%), Gaps = 41/359 (11%)

Query: 12  TKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +E+T   +++Y +    G  ++ +           A+         + +          
Sbjct: 5   KEEKTNTWRVLYRYTDWNGERKQSQKRGFKTKREAQAW--------EREQLNKLGGDLDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + K  +  Y +      +  N+  + E     +++   G      IT + I +       
Sbjct: 57  SFKSFVQHYSEDMQAR-IKENTWATKEHIIQTKLMPYFGKLKMCNITAQQIITWQNKLIN 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED 178
                   ++P         +  +F  AVR   +  NPC       +K       WTKE+
Sbjct: 116 YKGDNGKPYSPVYLKTIHNQLSAIFNHAVRYYNLKENPCQKAGSMGKKKNREMLFWTKEE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
             +F     +      AFE L ++G+R  +              ++   K+         
Sbjct: 176 YLKFADAMMDKPMSYYAFEMLYWTGIREGELLAITPADFDFEKRTVTINKSFQHLNGRDI 235

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                      T++LP      +           + +    +  +         A +AGV
Sbjct: 236 ITSPKTEKSNRTIQLPKFLCDEMQDYLKMLYDVGLEDRMFPVTKSYLHREMNRGAKEAGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +   H +R    ++  D G +A  +    G +++D    Y       +   + + ++ 
Sbjct: 296 KRIRIHDIRHSHVSLLIDMGFSATAIADRVGHESIDITYNYAHLFPSKQ--AEMADKLD 352


>gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
 gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149]
          Length = 405

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/392 (10%), Positives = 96/392 (24%), Gaps = 74/392 (18%)

Query: 12  TKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +   R  K  Y F      G+R R+      T   A  +               ++   
Sbjct: 4   VRAIKRGKKWQYIFEIAKVGGKRQRISKSGFDTKGAALEAGTKAKADYDNAGIVVKENDI 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +L   +  + +     +L   +   +       I    G +    +T   ++  +  + +
Sbjct: 64  SLHDYLEIWLEQYCDVNLNPQTVHGYRKKIRLYIDPVLGKYRITSLTPIILQDFINDKFN 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-------------EYVAINPCLSVERPKRKTEGIRPWT 175
              S    L+S++ +   +++              + V +    +  +   + +   P T
Sbjct: 124 EGFSRN-TLSSIKGILNKSLKHAVSKYQFLKSNPMKEVELPMATAKAKVPTRKKVRVPVT 182

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           KE  ++    + EG+   +        GLR  +     +    +    +           
Sbjct: 183 KEQFEKIIDRFPEGTSQHIPLILGYKCGLRLGEVFALDIMKDFDEESKVIFINHQVQHND 242

Query: 236 ELPDGF--------------------------MKLLAMTPIGKETF-------------- 255
                +                           ++L       + +              
Sbjct: 243 TKNFWYLSNPKYDSKRTIDLDDETFNLLLRKKKQMLKDMDYYGDMYTRLYLTKDLEITDE 302

Query: 256 -------FINNDKQKMNATQFSIWFKAKATKAG---------VNKSAHGVRKFSATISAD 299
                                           G          +   H +R   A+I   
Sbjct: 303 YDELNPDNYIEFNPLNRYQDGRYIQPRIMQHCGRIVHYQLDLPDWDFHSLRHTHASILLA 362

Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           AGA    +    G K ++     Y+   + +R
Sbjct: 363 AGADIKYVQDRLGHKNIETTLNVYSHVMEEMR 394


>gi|46358652|ref|YP_006360.1| Int [Enterobacteria phage ST104]
 gi|46357888|dbj|BAD15167.1| Int [Enterobacteria phage ST104]
 gi|312911293|dbj|BAJ35267.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
          Length = 387

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F   +G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVNKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    ++ P+ K
Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E    +   EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINMDWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +++   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180]
 gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 38/308 (12%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE 124
             T   +  ++     +    A ++   + S      R     + D+R+ +   +   + 
Sbjct: 3   DKTFWDVRKDFMSHLRYTRGCAESTCYGYHSDLGIWGRWLDESEHDWRECSHIEVEQWIN 62

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK  P    + ++++   +KWA++ + V  +P    E+PK          +++  
Sbjct: 63  VQTRERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQD 122

Query: 181 QFKSFWSEGS-----------------QPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI 221
           + K    + S                 + R    F L   SGLR S++    V+ ++   
Sbjct: 123 RLKEALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTG 182

Query: 222 FSIK--------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +         ++    + V   +     ++  P  +  F   +            + 
Sbjct: 183 QIARSVRVIGKGNKERMVPLPVAFGEELAAWISDLPSDEFIFAKESGGDPPKPRTVRDYL 242

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                KAG++K  + H +R   AT   ++GA   ++ A  G   +   + YT  +D    
Sbjct: 243 SKIIKKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDR-- 300

Query: 332 GIKNSRRI 339
                 ++
Sbjct: 301 MASVVAKL 308


>gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057]
 gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056]
 gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057]
          Length = 344

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7]
 gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7]
          Length = 337

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  ASTHRQALAALLFFYGKVLCADLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGLREQLA 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes]
 gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli]
 gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium]
 gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU]
 gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli]
 gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli]
 gi|294843384|ref|ZP_06788067.1| IntI1 [Acinetobacter sp. 6014059]
 gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae]
 gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda]
 gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa]
 gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli]
 gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes]
 gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes]
 gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans]
 gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli]
 gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli]
 gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa]
 gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli]
 gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa]
 gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli]
 gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium]
 gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli]
 gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii]
 gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae]
 gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae]
 gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Kentucky]
 gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae]
 gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli]
 gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii]
 gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1]
 gi|108945866|gb|ABG23475.1| integrase [Morganella morganii]
 gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa]
 gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa]
 gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae]
 gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa]
 gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae]
 gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU]
 gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa]
 gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa]
 gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa]
 gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca]
 gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2]
 gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii]
 gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX]
 gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli]
 gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli]
 gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii]
 gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli]
 gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli]
 gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli]
 gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa]
 gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae]
 gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii]
 gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa]
 gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda]
 gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii]
 gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium]
 gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2]
          Length = 337

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2]
 gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2]
          Length = 304

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR---KHTPSSAIQF 136
                 +  +  ++E +    +          +      +RS +      + +P +    
Sbjct: 15  LQVDGCSPETARAYEGHLRAYLSWQRRAHLDGLVLEVPVVRSYLADLYDARRSPRTIAAH 74

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP 192
           L+++R L +W + +     +   +++ P+  T   R  T++ M+Q      +    GS+ 
Sbjct: 75  LSAIRSLSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLLALPDTASPTGSRD 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248
               E L  SG R S+     +  L      ++   K      V L    ++ L      
Sbjct: 135 AAILELLYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRRLVSYLDE 194

Query: 249 -------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
                           +   F++   ++M+A      F+A A  AG+    + H +R   
Sbjct: 195 GRPLLIRSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITPHAMRHTF 254

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           AT     GA    +    G  ++   + YT             RR
Sbjct: 255 ATDLLAGGADMRSVQELLGHASLATTQLYTHLTPER--MKDALRR 297


>gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 382

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 101/349 (28%), Gaps = 38/349 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +     +    +RK    +      H       +++++T  +        P     T+  
Sbjct: 9   DTVAGKRYRVRYRKPDKSQTDKRGFHTKKEAELFLASVT-VSKATGDYIDPALARVTVAD 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
           L   +       +L  +S     + ++  +    G  + R I    ++  V         
Sbjct: 68  LAETWLAGKRPPTLKPSSFKPLLTSWNVHVEPTWGHREIRSILPSEVQGWVTRLGQPVIS 127

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + +  ++ L  +  +   A+    ++ NP  S+    RK+  +        Q   
Sbjct: 128 GGGDKSATVVLRALGVLAGILDMAIADRRISRNPARSLTNLPRKSRKVGRAYLTHDQLQT 187

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------NIFSIK 225
                     +      Y GLR  ++    V+++                    ++ + K
Sbjct: 188 LAEKSAHPALVLTLG--YCGLRWGEATALRVRNVNQLRRRLHIEENAVLVGSDIHVGTPK 245

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---- 281
           T +  ++         +  L       +  F             + WF     +      
Sbjct: 246 TWEQRSVPFPAFLSPMLAELCEGKGPNDLVFGKGRTHMKRGDYITGWFATAVRRVQSLDE 305

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
                + H +R  +A+++  AGA    +    G  +     +TYT   D
Sbjct: 306 TMPRVTPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDLFD 354


>gi|325981039|ref|YP_004293441.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325530558|gb|ADZ25279.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 337

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 92/337 (27%), Gaps = 25/337 (7%)

Query: 17  RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK  +  F    G R+R      + T    +   L   + +   +    K   T    
Sbjct: 5   KRGKTWWISFTTPSGERVRCSAATEDKTQAQEFHDKLKAESWR--VVKLGDKPKRTWDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132
             ++            +     +  + + +        ++T   I    E   ++ + ++
Sbjct: 63  AYKWLMETQDKK----THHDDVAKINWLQQFFRGKYLDELTRDVIAGIGELKRKETSSAT 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A + L  +R + + A                   +    R       Q            
Sbjct: 119 ANRLLALIRSILRRAALDWEWID---KPPVIKLYREARRRVRYLSATQATMLIQELPQHL 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT 248
                F L +GLR S+  +     +                   I V L    + +L   
Sbjct: 176 ADMVTFSLATGLRRSNVTKLEWSQVDMQRNVAWIHGDQAKAGKPIHVTLNATAIAVLTRQ 235

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                    +   + +     +  +     +AG+ +   H +R   A+     G   + +
Sbjct: 236 IGKHPRSVFSYKGKPITQVN-TKAWYKALKRAGIEDFRWHDLRHTWASWLTQNGVPLNVI 294

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                W++ +    Y        L  +   + + V+D
Sbjct: 295 QEMGAWESAEMVRRYAH------LAPEQFAQHARVLD 325


>gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 383

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 100/350 (28%), Gaps = 25/350 (7%)

Query: 11  VTKERTRHGKIIYYF-RKGHGRRI----RLPYPHESTFIPA--YMSALTGSTPKREYINS 63
           +  +  + GK  Y F R      +    +    +      A      +  +  +     +
Sbjct: 28  LYLDIYKDGKRTYEFLRLYIIPEVDETAKARNANTLQAANAIKAQKIIELTNDEAGVTKN 87

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG 122
             +    L   +  Y         +    I  +     +I+  GD    +++   +    
Sbjct: 88  ASRSKMLLIDWMRHYSDHKLKTGQSAAFHIQIDKAIKHLIKYRGDTVTMKEVDKPYCLGF 147

Query: 123 VESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--- 170
           ++   +            +   +   +      AV++E +  NP   +    R       
Sbjct: 148 IDYLNNAKRKDGKLMAKVTTAGYFRCLNCALNLAVKEEIIPYNPITKINPDDRIKIPEST 207

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               T ++++   +        + A+ F  + GLR  D        +  +    + +   
Sbjct: 208 REYLTVDEIKLLIASKCINEPTKQAYLFSCFCGLRLGDIQALTWGDVILDGSQYRVKIVM 267

Query: 231 TIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
                 L      + L   P   +    +       AT  ++  K  A  +G+ K+   H
Sbjct: 268 KKTQKTLYLPLSDEALKWMPKRDDAKDTDKIFHLPYATYINVVLKTWAQNSGITKTITFH 327

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             R   AT+    GA  +      G   V     Y K  D+ +   +   
Sbjct: 328 TARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKK--DEAVN 375


>gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97]
 gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989]
 gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591]
 gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97]
 gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989]
 gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           145-7]
 gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591]
          Length = 356

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2]
          Length = 357

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y +      +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L               G ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASGSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSYSMAARYRDSRGRE 349


>gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b]
 gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b]
          Length = 343

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 88/334 (26%), Gaps = 39/334 (11%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +   GK           G+RIR           +Y   +      + ++   +     + 
Sbjct: 5   KLPSGKWQAQVFPSGRDGKRIR-RQFATKGEALSYEKYVKEQAQDKPWLG-EKADKRRVI 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
            L+  +  +     LA        +         G+    +   K   S  E R      
Sbjct: 63  ELVELWFNTHGIT-LADG--EKRRTTMAFACEAMGNPLATEFNAKIFASYREQRLSGKIT 119

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   TP +    L   R +F    R +       L   R  + +E    +   +  
Sbjct: 120 RSTRVKTVTPRTVNLELAYFRAMFNELRRLDEWTAPNPLENVREFKISESEMAYLTIEEI 179

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      E S+ +      +  L +G R S++       ++         K      V +
Sbjct: 180 RALLAECENSRSKDLTTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPI 239

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKF 292
            +     L  +   ++ F                 F+    +AG+  +      H +R  
Sbjct: 240 TEKLQAELPSSRKAQQLFATCYS-----------AFRKAMQRAGIE-TPAGQLTHVLRHT 287

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G   +     Y   A
Sbjct: 288 FASHFMMNGGNILVLQRILGHTDIKVTMRYAHFA 321


>gi|238026028|ref|YP_002910259.1| phage-related integrase [Burkholderia glumae BGR1]
 gi|237875222|gb|ACR27555.1| Phage-related integrase [Burkholderia glumae BGR1]
          Length = 339

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 109/336 (32%), Gaps = 23/336 (6%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +L LPP +  ++T  GK  YY+  G   R       +  F+ A            E  
Sbjct: 6   TKNLHLPPRMRIKQTSSGKTYYYYDIGGKPRRWKALGGD--FVEALR-----LYADLEQG 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHI 119
           +       T + +   Y       S AV +R +     +++            +I   HI
Sbjct: 59  DRTASTLVTFRHVAERYLVDV-LPSKAVETRRTNLLQLEKLYSFFDSPPAPLDEIKPIHI 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R  ++ RK +P SA + +     +F  A                 ++  E  R     D 
Sbjct: 118 RKYLDWRKASPVSANREIALFSHIFNKAREWGATDRPN--PCAGVRKHREAGRDVYVGDQ 175

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              + +       R A +    +G R +D  +   + +++ + +++  KTG  + +E+  
Sbjct: 176 LYRRVWEKADIPLREAMDLAYLTGQRPADVLKMDERDIRDGVVTVRQNKTGARLRIEIVG 235

Query: 240 GFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKAGV---NKSAHGV 289
               LL      K                + +  +     F      AG+         +
Sbjct: 236 ELATLLDRIAARKIDHNPRSTRLIVDEQGRPLGQSALRFRFDRTREAAGIAKAEFQFRDL 295

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R  + T   ++ +      +  G  +V   E Y + 
Sbjct: 296 RAKAGTD-KESASDLRGAQSLLGHGSVAMTEHYVRK 330


>gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88]
 gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88]
          Length = 339

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 95/337 (28%), Gaps = 47/337 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y    +G+R+R           A+ S       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             LI ++       SL   +    +        I    GD    ++T        E+R  
Sbjct: 62  SELIEQWY------SLYGQTLADPKRLIAKLRIICNGLGDPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K     +  
Sbjct: 116 GEVRNEDGTFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAESELAF 175

Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            T E++++     ++   S   L  +  L +G R S++       +     +    K   
Sbjct: 176 LTPEEIKRLLDACADSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +     + L        T                  F+    +AG+        H
Sbjct: 236 NRTVPISKDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGLELPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A+     G     L    G   +     Y  
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|83313141|ref|YP_423405.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947982|dbj|BAE52846.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 381

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 114/340 (33%), Gaps = 32/340 (9%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPTTLKWLISEY 78
           R G  +R ++      ++  A   AL        G+ P      + ++ P + + L++ +
Sbjct: 50  RAGEEKRHKIGRSDVLSYDAARQEALRVLGEVQKGADPTAAIKQARQEGPLS-EELVN-W 107

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQF 136
             S    ++  ++R ++ S  +  +I   G      IT   I +   + +  +   A Q 
Sbjct: 108 FDSH---TMKDSTRKTWRSVVNNHLIPALGSRKPSTITKADILAAYRDIQAKSGRQANQA 164

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRL 194
           +  +   +      ++   +   + +  ++  +  R    +++ ++   + + +    + 
Sbjct: 165 IIILSTFYNRTTDGKFNPASDFRNDKSIRKHRDAEREVVLSQDQVRALLADFDKSPAQQS 224

Query: 195 AFEFLL--YSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMT 248
           A    L  Y+G R  +        +     +        K     T+ L      +L   
Sbjct: 225 ADAARLLFYTGARIGEILALRWDAVNLTQGTITLAHTMTKEAKAKTLHLSPRAQAILERR 284

Query: 249 PIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                         +    +      ++KA   + G+     H +R   +TI   +G +A
Sbjct: 285 QEEALEGAEYVFPGRDGEAHQVVIKAFWKAACKRCGIEGVHIHDIRATYSTILIASGESA 344

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +  T G         Y       R+    ++ I+S VD
Sbjct: 345 KAVGKTMGHADTKTTMRY------ERIAQDRAKDIASKVD 378


>gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 341

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 100/335 (29%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           RLPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  RLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSELSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299]
 gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1]
 gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           124-1]
 gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1]
 gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299]
          Length = 356

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 325

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 89/334 (26%), Gaps = 35/334 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           +Y   L          ++      +L  L+  +    H  SL
Sbjct: 9   RTGKRLR-KQFASKGEALSYERQL-KFGGVSIDTSAAEDAGQSLSELVQRWFD-MHGRSL 65

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQF 136
           A           + +    GD     + TK   +    ++ +            S+  + 
Sbjct: 66  ADG--EGRLRKLELLCANLGD-PIASLFTKADFAEYRKQRLSGKFGRFDKPVKESTINRE 122

Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
            + +  +F    R  E+   NP   + + K     +     +D++   +     S P L 
Sbjct: 123 HSYLSAVFNELKRLGEWQGDNPLDGIRQYKESDSELAFLYHDDIRLILNECDASSNPDLG 182

Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 L +G R S++       L     +    K     TV +     +LL        
Sbjct: 183 SVVRICLATGARWSEAQELKQSQLVPYRVTYINTKGKRNRTVPISPELYQLLPRRRGQLF 242

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           +              F    K         +  H +R   A+     G     L    G 
Sbjct: 243 SPC---------YDAFRQALKRSQIDLPEGQLTHVLRHTFASHFMMNGGNILVLKDILGH 293

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            ++     Y            +     ++   D 
Sbjct: 294 TSIQMTMRYAH------FAPDHLDAAVTLNPYDR 321


>gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 326

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 82/302 (27%), Gaps = 32/302 (10%)

Query: 71  LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSG 122
           L+  +  + ++ A    ++ N+  ++     Q +                 +  + IR  
Sbjct: 23  LRDAVLAWIEALARERRMSSNTVEAYGRDLRQFLHHLASRQGTPTIPMLIGLKVRDIRGF 82

Query: 123 VESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---- 175
           + +R+    +  S ++ L  +R   ++  R+ +  ++    V  PK      RP      
Sbjct: 83  MAARRADEVSGRSLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKVPRRLPRPLPVSAA 142

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQK 228
                       +      ++       L  +GLR S++         L          K
Sbjct: 143 VALTDTAIRAGEEREPWVLARDAAVLALLYGAGLRISEALGLSRRDAPLPGVDQVTVLGK 202

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAG 281
            G    V +     + +A                        ++               G
Sbjct: 203 GGKQRMVPILPVVAQAVADYVAACPLPLPPEGPLFLGARGGPLSPRIIQYTVARARGALG 262

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    + H +R   AT           +    G  ++   + YT   D  RL    +   
Sbjct: 263 LPESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYT-QVDAARLMSAYAAAH 321

Query: 340 SS 341
             
Sbjct: 322 PR 323


>gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033]
 gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|329116727|ref|ZP_08245444.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907132|gb|EGE54046.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 379

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 113/373 (30%), Gaps = 51/373 (13%)

Query: 18  HGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYINSPR 65
           +GK  Y+      R+   +++ +    +S    A    L           P +E     +
Sbjct: 8   NGKYRYFEKFYDSREEKWKQVTVTLNSKSRISQAEAKRLLAIKIDKVLSRPTKEEEQQLK 67

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T   L+ E+ K      +   S  S  +         GD    + TT+ I++ +  
Sbjct: 68  LANKTFSQLLEEW-KLVRISEIKPASFKSEINSLIYFRNDVGDLKLSEYTTQMIQNYLMG 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
                 +       +  +F +A R  Y+   P  +V  P+ + +  +    ++       
Sbjct: 127 LNIANVTRKNRKIYLNAIFGFAERMNYIDKTPVKNVVIPRVRKDYEKLKKAQNHFISKEE 186

Query: 182 ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 +     +  +  LA EF+  +GLR ++        +  +   +K   T   +  
Sbjct: 187 LGLVISYCQNHDKDIRYTLAMEFIFLTGLRFAEFIGVRYCDVDFDNRLLKVDHTIDYVAH 246

Query: 236 EL----------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                       +       + +   F+ +  Q M   +   + 
Sbjct: 247 NYDDRVLQTTKTVGSVRTIILSERCFEIIDYFKKYCLDEIFIFVTDRGQIMRQPKLYQFI 306

Query: 274 KAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
           K     A   G   + H +R    ++ A+ G     +M   G        + Y+      
Sbjct: 307 KNMCDTALGEGRAYNIHMLRHSHISLLAELGVPIKAIMERVGHVDESITLKVYSHVT--K 364

Query: 330 RLGIKNSRRISSV 342
            +     ++++S+
Sbjct: 365 SIHDDVRKKLNSI 377


>gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
 gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1]
          Length = 362

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 77/285 (27%), Gaps = 19/285 (6%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A  GS           ++  +L+     +         +  +   + +     ++  G  
Sbjct: 2   ARAGSIESLPPPPRDIRE-YSLEDAARLFLTILESTGWSSKTIKVYRAALKDFLKSYGRV 60

Query: 110 DYRKITTKHIRSGVESRK-------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                +       + S          + ++A  +   +R   KWA  +          + 
Sbjct: 61  RVGDASHMTYVQWMSSVSERVRKGVISRTTAHYYSIMVRRFLKWAGVEGV--------MR 112

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
              R              +     S      L    L  +GLR S+     +  +     
Sbjct: 113 PFSRGERRFSGSLSWRDVEALLSASRDIIDALIVSMLAETGLRVSELLSLRLSDVDLGRG 172

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            ++         +       ++L    +       ++   +++        K+ A +AG+
Sbjct: 173 VVRVVGKYGKERIVFLGPLSRMLLEEYLASNPLPPDSRIIELSYQAVYKRLKSLAKRAGL 232

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      H +R   AT +   G +   L    G   +   + Y  
Sbjct: 233 DPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLH 277


>gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 397

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 106/366 (28%), Gaps = 38/366 (10%)

Query: 2   TPS-LRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAY---------- 47
           TP   + P  V  +    G    Y   +R G  +   L          A           
Sbjct: 19  TPKQPKEPVRVRYKTLSDGSQSVYLDIYRDGKRQYEFLKLYLIPETNAAAKAQNKATLAA 78

Query: 48  ------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
                    +  +       N+  +    L   +  Y++S     +   S     +  + 
Sbjct: 79  VNTIKSQRIIELTNGVAGLKNTSLRSKMLLLDWMQAYKESQEKKGVR-GSGKLISNTMNV 137

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH---TPS-------SAIQFLTSMRVLFKWAVRQE 151
           +   +     R IT     + +   ++   +PS       + + +    R     AVR+E
Sbjct: 138 LRAFNAKATMRDITRDFCLAFINFLRNIYVSPSGKKLSQFTCVSYFGCFRGALNAAVREE 197

Query: 152 YVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            +A NP       E+ K         T ++++            + AF F  Y GLR SD
Sbjct: 198 IIAENPVNRLNTDEKIKMPESKREFLTIDEVKILIDTPCRREDVKGAFLFSCYCGLRISD 257

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-- 266
                 +++ ++    +           L              +      +         
Sbjct: 258 VLVLKWKNVDSSAEQWRINIIMQKTRQPLYLPLSMNARKWMPERNGAGDEDLVFPTLPCE 317

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  K     AG+  + + H  R   AT+    GA  + +    G   V   + Y K
Sbjct: 318 DTCNVQLKPWVKAAGITKHVTYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAK 377

Query: 325 GADRIR 330
             ++ +
Sbjct: 378 IINKKK 383


>gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 314

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 80/268 (29%), Gaps = 14/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  + ++         +  +   ++ +         +  + +   K       S+   P
Sbjct: 11  WQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFHDEQQLKKCLYEYLSQPIKP 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           ++    LT ++  FKW V +  +  NP   + + K +   +   T+   +          
Sbjct: 71  ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236
            G +        L +G+R  ++    ++H       +                   +T  
Sbjct: 131 CGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVSRVLPILPVTAN 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                + +       K   F     + + +  +    +  + K GV    + +R   A +
Sbjct: 191 AVKKLIAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIRPYDLRHTFALL 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L  T G  T++  + Y  
Sbjct: 251 YLKNGGFELSLQKTLGHTTLEMTKRYVH 278


>gi|220929268|ref|YP_002506177.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219999596|gb|ACL76197.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 413

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 99/375 (26%), Gaps = 64/375 (17%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
           P   E          +     + +  +       T+   I  +       ++   +   +
Sbjct: 37  PRLTEKQREKELQKQVVLFEEEVKSGSYYEPTKMTMSEFIELWLD-KKKNNIESKTHQGY 95

Query: 96  ESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRV 142
                 ++++  GD     +   H+ +  E+ +             + +S + +  ++  
Sbjct: 96  SGLLKGRVLKVMGDTKIIDLKPLHLINFYENLQELGIREDGREGKLSTNSILHYHRALNA 155

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLY 201
           +F   VR   +  NPC  V  PK   + +    ++ + Q  S                L 
Sbjct: 156 MFGDGVRWGLIKENPCSKVRPPKVVKKEMSCLDEDQIPQLISALCNEPIDISTFITLDLV 215

Query: 202 SGLRCSDSCRAGVQHLQ------------------------------------------- 218
           +GLR  + C     ++                                            
Sbjct: 216 TGLRRGELCGLQWDNVNLKDNTIVVEQAVSYTPETGTIIKTPKTKSSIRKITIPKTTSDL 275

Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                 + ++ +        +     ++    T    E  F   D   M+    +  FK 
Sbjct: 276 LSIYRKWWLEQKIKVGDQWQKSAREEVEKNGQTWEDPEYLFTTWDGYVMHPDTLTKTFKK 335

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLG 332
              +  +     H +R  +AT+   AG     + A  G +  +     Y+       +  
Sbjct: 336 FIKRNNLPDIRLHDLRHTAATMLIHAGLNIRAVAARMGHENPNVTLAIYSHALLSADKQA 395

Query: 333 IKNSRRISSVVDSDD 347
                 +      ++
Sbjct: 396 ADVMGNLIKKKPQNE 410


>gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
 gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium
           SCB49]
          Length = 284

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 89/263 (33%), Gaps = 17/263 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSS 132
           +++K      L+ N+ +++ +     +         ++  + +R          + + S 
Sbjct: 16  QFKKWMEEQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYDYIIKNRFSISY 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q ++ ++   ++             + ERP +        +K+++++      +  + 
Sbjct: 76  QNQCISGVKKYLEFRG-----LAVTLENYERPDKGKTLPAVLSKQEVKRLLD-GIKNLKH 129

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +     +  SGLR  ++       + +      I+  K      V L    ++ L     
Sbjct: 130 KTLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKDRYVLLSSKLLEDLRKYYT 189

Query: 251 GKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                    + +     +A+     FK+ A +AG+ K    H +R   AT   + G    
Sbjct: 190 VYRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGITKEVRLHTLRHSFATHLLENGTDLR 249

Query: 306 ELMATYGWKTVDQAETYTKGADR 328
            +    G ++      YT  + R
Sbjct: 250 YIQQLLGHQSPKTTMIYTHVSTR 272


>gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G]
          Length = 356

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++   P  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQTAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 368

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 34/359 (9%)

Query: 10  FVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-- 65
            + ++ T+ G+ +Y   + KG  R   L          A       +      I S R  
Sbjct: 8   RLRRKATQSGESLYLDIYFKGKRRYEFLRLYLIPERTKADRLKNEQTLRLAIAIKSRRTI 67

Query: 66  ---KKPTTLKW------LISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDF-DY 111
                            LI  Y +      L    RI  +  FD     + +  GD    
Sbjct: 68  ELFNNKYGFATEKPDVNLIE-YIQLVAANKLKQG-RIGIKGTFDTLVYHLTKYHGDKIAL 125

Query: 112 RKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           + I  ++++  V+                SS     TS++++   A++ E V  +P  SV
Sbjct: 126 QDIDIRYVKGFVQYLSTAIARTSGEVLKSSSQHNIYTSLKIIIHQAIKDELVTSDPTKSV 185

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           + P+         T+E++++           + +F F  ++GLR SD  +   + +    
Sbjct: 186 DPPRMVLPHKEHLTEEELKRLIQTPCPKEMVKRSFLFCCFTGLRISDVQKLIWKEVVTTN 245

Query: 222 FSIKTQKTGTIITVELPDGFMK-LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                        +E      +  +++ P  +E    ++       +      K   + +
Sbjct: 246 NETYINFRQKKTKIENYVPLSENAISVLPSKRENTETDSVFDLPKESTIRKVLKKWVSDS 305

Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
           G++K  + H  R   AT+  ++G   + +    G   +     Y K  D+  R  + + 
Sbjct: 306 GIDKHITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNSI 364


>gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815]
 gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L           +LA N++ S+        R         +  + IR+      E RK  
Sbjct: 4   LRQRMLHDMQIRNLAENTQKSYLIQVSSFARHF-RRSPELLGPEEIRAWLIYLREERKLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + ++R L++  +++++           P++        + E++  F       
Sbjct: 63  PASLSPAIGALRFLYRVTLKRDWSD----EDFPLPRKPVRLPVVLSLEEITTFFDSI-PS 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAM 247
            + R        +GLR S+     V  + +    I+  +        V L    +++L  
Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEILRT 177

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                         +     +     S        + G+ K  + H +R   AT   +AG
Sbjct: 178 YWQDAHPRGWLFPGDIPGHPITRGAVSRICALARQRCGIRKPITPHSLRHAFATHLLEAG 237

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y + A
Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262


>gi|57233840|ref|YP_182174.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224288|gb|AAW39345.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 386

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 103/357 (28%), Gaps = 49/357 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G   Y  +   G+                   A    L     + +     +   +T+
Sbjct: 7   KRGN-SYRVKISLGKDSASGKYLSHYETVKGNKKAAEKRLNELIHQFDSGTFVKPGKSTM 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              +  +       +L+  +   +       II   G+    ++  +H++     ++   
Sbjct: 66  YEYMQSWLNDYCKPNLSPRTVELYSYISTKHIIPTLGNIPIVELKPQHLQHLYADKQSFG 125

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +    K AV+   ++ N   +V+ PK +   ++   + DMQ       
Sbjct: 126 LSNRTVQIIHVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNESDMQVLLEKAK 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------- 231
           E +     F   L++G+R ++        +   +  +   ++                  
Sbjct: 186 E-TPYYALFYTSLFTGMRRAECLALRWSDIDLILCQVYVLRSMQYVQDADLGKRITFKEP 244

Query: 232 -----IITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSI 271
                   + L    + +L      +                  F + D   +     + 
Sbjct: 245 KTSKSRRQIALSPSNVIILREHYQDQSELRKTLNLPGLTDSDLVFSHYDGSPLLPNSVTH 304

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
            +   A + G+N    H  R   A++    G     +    G  ++    +TY+  A
Sbjct: 305 AWIKLARRCGLNGIRLHDARHTHASLLLKQGVHPKIVQERLGHGSIQITLDTYSHVA 361


>gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
 gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein
           [Oceanobacter sp. RED65]
          Length = 319

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 80/305 (26%), Gaps = 53/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            + + R        +  +  ++  +    I   G      +    + S +         A
Sbjct: 6   FLDKVRNRMRMAGYSERTIKTYIYWIKYFIHFHGKRHPETLHNDEVCSFLSHLASNKHMA 65

Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                T++  L  +   Q        L     +R+    +  T+++++  +     G + 
Sbjct: 66  INSQKTALNAL-AFLYNQFLKQPLGDLGFVYAQRQRRLPQVLTQQEVK--RIINELGERD 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------------- 221
           RL    +  SGLR S+  R  V+ +                                   
Sbjct: 123 RLIVSLMYGSGLRISECLRLRVKDIHFETGSLDVIDGKGGKDRKTILSKNIVGDLQNQIQ 182

Query: 222 ---------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                           S+       +        +M +   T I K      + +  ++ 
Sbjct: 183 NSIALQEKDNLSGLGPSLPGALGRKLPNAYRQPAWMFVFPSTTICKHPITGIHCRHHLHE 242

Query: 267 TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           T            AG+     + H  R   AT    AG     +    G K V   + YT
Sbjct: 243 TVMRKALAKACKSAGIYNKRITCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYT 302

Query: 324 KGADR 328
               +
Sbjct: 303 HVVGQ 307


>gi|77463785|ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77388203|gb|ABA79388.1| possible phage-related integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 413

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 119/371 (32%), Gaps = 43/371 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHG---RRIRLPYP------HESTFIPAYMSALTGSTPKREY 60
            +       GK  +  R  HG   RR+ L                  ++A +  T     
Sbjct: 27  GLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLSLAGARERARQTLAAASAGTDPAAE 86

Query: 61  INSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
           + + +          +K LI ++ K       +             ++   G+ D  +I 
Sbjct: 87  VKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKSGAVVR--RELERHVVSAWGERDVHQIG 144

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +   ++    +    +A +    +   F W V ++ +A +P   V+   ++T   R 
Sbjct: 145 KRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETSRARV 204

Query: 174 WTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            T ++++ F +    EG       + LL +G R ++  +     ++ +++ +   +T   
Sbjct: 205 LTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHLTADRTKNG 264

Query: 233 ITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKA----GV--- 282
              ++P        L       +                 S +FKA+A  A    G+   
Sbjct: 265 RAHDVPLTGAVRAALDEVERVTDEEGRVRFIFTTTGRTPVSGFFKARAVLAEAMVGIAQK 324

Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADR 328
                      + H +R+ +AT  A  G       A     +         Y +   AD 
Sbjct: 325 ERGEPVEIPRWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADE 384

Query: 329 IRLGIKNSRRI 339
            R  ++   R 
Sbjct: 385 KRQALEAWARF 395


>gi|330898878|gb|EGH30297.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 349

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 99/333 (29%), Gaps = 25/333 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  TL+  
Sbjct: 6   KTPSGTWKALIRKTGWP-TAAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            ++    S   ++I   G +    ++ + I    + R        
Sbjct: 65  LKRYLSDITPTK-KPTTQRGETSKAKKLIEHLGKYSLAALSAEIIAGYRDKRLNEKGRAG 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             + ++    L  +  LF  A+++  +    NP L++ +P       R  + ++ ++  +
Sbjct: 124 TASNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRNRRLSADEERRLMA 183

Query: 185 FWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232
             +  S P L +     L +G+R ++        +                 +T      
Sbjct: 184 AVNRHSNPMLGWIVGIALETGMRSAEINTLRKPMVDLERRIVKLVDTKNDGQRTVPLSKR 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            T                    F      +      F+  + +   + G+ +   H +R 
Sbjct: 244 ATELFKAAMANPARPGDCQLVFFGEPGKDKNRRPYAFTKIWGSLVKELGLSDFRFHDLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +   + G +  E+ A  G K++   + YT 
Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336


>gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 292

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 18/268 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130
           L +   +      L    + S                    T   +R+    +  R  TP
Sbjct: 9   LRARMIEDMRIKGLGDKCQKSHIRAIKDFAAFL-RRSPDTATPDDLRAYQLHMTDRGVTP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189
            +    + ++R  F+    +  +  +     +   +  +    ++ E++          G
Sbjct: 68  PTYNARIIALRFFFETTCGRGEMKRHM----QFRTQPRKLPVVFSAEEVAALLQVAPGPG 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            + R A      +GLR S+ C   V  + ++     ++  K      V L  G + LL  
Sbjct: 124 LKYRAALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLRE 183

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
                               +++ Q    F +    AG+ K   + H +R   AT   +A
Sbjct: 184 YWREARPEGWLFPGKPKINPVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHSFATHLLEA 243

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G     +    G   ++  E YT  A +
Sbjct: 244 GTDVRVIQVLLGHAKLETTERYTHVATK 271


>gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++       IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHCVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|323701134|ref|ZP_08112809.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533736|gb|EGB23600.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 394

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 111/365 (30%), Gaps = 43/365 (11%)

Query: 13  KERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++R+++     Y    R   G+R RL    + T   A    +     + +          
Sbjct: 6   QKRSKN-SWTIYIEMGRDTEGKRKRLCRAFKGTKKEA-EKEMARLLLEIDSGQYIEPTKL 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  +       +LA  +  S++      II + G    +K+   H++     +  
Sbjct: 64  TFGDYLLNWLTDYGKSNLANTTYYSYQKIIEKHIIPEIGGILLQKLQPMHLQKYYSLKLD 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +       +R   K AV+ + V  N   +V  PK +   I   + E + +F    
Sbjct: 124 SLSKRTVQYHHRVIREALKHAVQLQAVTRNVADAVAAPKPQRPEINMPSIEKINEFLVAA 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKT 229
           SE  Q        L +G+R  +        +                     +    +  
Sbjct: 184 SEH-QDWSIIYTTLLTGMRRGEVMGLRWSDVDFKQKVLHVRQTLQRLPKIGFYFAPPKSK 242

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFF--------------INNDKQKMNATQFSIWFKA 275
            +   V +P+  +++L      +                     D    + ++ +  +K 
Sbjct: 243 KSRRPVVMPEALIEVLKNHRKKQMENMLEMGEHYQDNNLVFCRPDGTPEDPSRLNHRYKD 302

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGA-DRIRLG 332
                G+N    H +R   AT+  +       +    G +T +   + YT       R  
Sbjct: 303 LVDGIGMNGFRFHDLRHLHATLLMEQHVHPKIVQERLGHQTFIITLDLYTHSIPTMQREA 362

Query: 333 IKNSR 337
            +   
Sbjct: 363 AEKIN 367


>gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 341

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          + E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------RYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +     +AG       + + H +       
Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 407

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|304360893|ref|YP_003857013.1| gp41 [Mycobacterium phage CrimD]
 gi|302858642|gb|ADL71387.1| gp41 [Mycobacterium phage CrimD]
          Length = 362

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 88/335 (26%), Gaps = 31/335 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G            +       +      F             +         +  TL 
Sbjct: 10  KDGSTYTSVLYRLNGKQTSTSFDDPVQAVEFKRMVEQLGAAKALEVIETTDAAARHYTLS 69

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV---ESRKH 128
             +  Y        +  ++   +E      I    G      +T   I   V     R  
Sbjct: 70  EWLRHYLDHK--TGVEKSTIYDYEKVVAKDIDPVLGPIPLAALTGDDIAKWVQALAERGL 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +       +      AVR   +  NP      P+ +   +   T+E   +     + 
Sbjct: 128 KGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLHDNITL 187

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------- 235
             QP +  EFL+ SG R  +        +  +  +++  +                    
Sbjct: 188 PWQPLV--EFLVASGARWGEVVALRPSDVNRDASTVRISRASKRTYEKGSYSVGAPKTHK 245

Query: 236 --ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA--HGVR 290
                +    +L       E  F NN    +    F    ++    +AG++     H +R
Sbjct: 246 SVRTINVDASVLDKLDYSGEHLFTNNVGNPVRHNNFHANVWQPALKRAGLDVKPRVHDLR 305

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              A+    AG     +    G +++    +TY  
Sbjct: 306 HTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGH 340


>gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
 gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333]
          Length = 311

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 91/282 (32%), Gaps = 33/282 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHT- 129
           + +Y         L+ ++  ++     +     G         +    + + VE+ +   
Sbjct: 10  LEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRARLSDVRPADVDAYVEALRTGS 69

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   SSA + + ++R   ++A+ +     +P + V  P       +    ED+++ 
Sbjct: 70  DGGSALSASSASRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIAVEDVERL 129

Query: 183 KSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236
               S G      + R   E L  +G R +++    V  +  +  +   +  G       
Sbjct: 130 LVAASAGDGPGPLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSVRLFGKGRRERV 189

Query: 237 -------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                               +LA    G    F+    + ++        ++ A +A + 
Sbjct: 190 VPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAILQSAARRADLE 249

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + S H +R   AT     GA    +    G  +V   + YT
Sbjct: 250 EHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYT 291


>gi|160946088|ref|ZP_02093302.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
 gi|158447820|gb|EDP24815.1| hypothetical protein PEPMIC_00037 [Parvimonas micra ATCC 33270]
          Length = 383

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 97/350 (27%), Gaps = 39/350 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
                Y        + +               A      K                 +  
Sbjct: 8   GNGWRYRVSYKDAGKYKTKTKGGFRTKKECELAAAELEKKLHVGMDISAGDRLFAEYMRT 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQ 135
           + +    G  +     + E     +         +++T +  +  +       ++    +
Sbjct: 68  WFELYQNGKHSPEHDRNIERSVKLVEEHFPGVKMKELTREMYQKFINEISPKYATDTVKK 127

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             T ++   + A+++  +  +P        +   K E ++     ++Q+  +   +  +P
Sbjct: 128 RHTYIKACLQEAIQEGIIFKDPTYKVIIKGKKDTKNEELKYLNFNEVQKLVAETKKDLRP 187

Query: 193 RLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TII 233
           R    +++     +G R S+        +     +I   KT                +  
Sbjct: 188 RYISRYVILFAIATGARFSEIMGITWDCVDFKNRTITINKTWDFKDTNDFSDTKNYASKR 247

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
           T+ +    + +L      +                F+N   Q ++    +   +     A
Sbjct: 248 TITIDTETVDMLQTLKSEQNKKALQTGLRNKKNLVFVNTKMQLVSNNAVNKTLRTLCKAA 307

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            +   + HG+R   A++    G     +    G K +    +TY+   D 
Sbjct: 308 KIKEITCHGLRHTHASMLLYKGVNIKYISRRLGHKDIVTTLQTYSHILDE 357


>gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
 gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus
           albus 8]
          Length = 336

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 95/306 (31%), Gaps = 43/306 (14%)

Query: 73  WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK--------------SGDFDYRKITTK 117
             +++Y          +  +  ++       +R                 D    ++   
Sbjct: 11  DYLADYLTYMRLVKGRSDRTVEAYYIDLRTFLRYLLINHNDADPNKVEFEDIAISEVPFD 70

Query: 118 HIRSGV------------ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERP 164
           +I+               + R ++  +  +  ++++  + +   ++  ++ +P   +E P
Sbjct: 71  YIKKIRLIDAYNYLKWLADERGNSIKTRARKTSALKQFYSYLHLKKGLISSDPIEQLELP 130

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF 222
           K      +  T  D Q+  +     +  R      L+   G+R S+ C      +     
Sbjct: 131 KLPKTLPKYLTLGDAQKLLAAVESANYERDYCMITLFLNCGMRLSELCGLNTDDISFENG 190

Query: 223 SIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFK 274
           +++   K      V + D  ++ L      +             N   +++        +
Sbjct: 191 TMRLFGKGSKERIVYMNDACVEALKAYLPRRSAVQTTDKALFLSNRNTRISRRMTQYIVE 250

Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-I 329
               KAG+     + H +R  +AT+    G      L    G +++   E YT    + +
Sbjct: 251 ESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNL 310

Query: 330 RLGIKN 335
           R     
Sbjct: 311 RDAANA 316


>gi|226945661|ref|YP_002800734.1| phage integrase [Azotobacter vinelandii DJ]
 gi|226720588|gb|ACO79759.1| Phage integrase [Azotobacter vinelandii DJ]
          Length = 400

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 101/367 (27%), Gaps = 27/367 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59
           P    + T  G+      Y    G  R+  L    E T   A        A         
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVEQARVMAQEWLAEVRRGGDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
                 +K  T+K   + + +         +++  +    D+ II   G    + +    
Sbjct: 89  AAKVAARKAPTMKEYCTTFMEDYSKQRNKPSTQRGYRGVIDRNIIPILGRMKVQDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
           + + ++   H P+ A +    +R +F  A                P              
Sbjct: 149 VAALMKKLAHKPAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMFPPGKETRLIVDD 208

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                   ++  ++   E     LA         R S+ C      +      +    + 
Sbjct: 209 ELVRIFRHLEHMEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWVDLEKRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVNK- 284
           T    +        L      +E                +       +K     AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSRAPRREGCPYVLPSPNDPTRHLTFGEHYGGWKRVLRAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK--NSRRISS 341
             HG+R  S T  A++G      MA  G KTV     Y    D+ +R   +   SRR + 
Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTEDKPVRDAAELVASRRQAI 388

Query: 342 VVDSDDP 348
              S  P
Sbjct: 389 TGGSPRP 395


>gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14]
 gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 297

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 78/280 (27%), Gaps = 25/280 (8%)

Query: 75  ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP- 130
            ++Y +       L+ ++  ++    +   R          ++T   +R  V        
Sbjct: 6   FTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGL 65

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S  + L+ +R  + +A ++ + A NP   V   K  ++  R       + F +  S 
Sbjct: 66  SAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSR 125

Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242
                  +    F  L  +G R S+     ++ +  +   +I   K     TV +     
Sbjct: 126 TDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQ 185

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGV--NKSAHGV 289
             L +    +                       +              A      S H  
Sbjct: 186 NFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALSPHAF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A+     GA         G  +V   + Y       
Sbjct: 246 RHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQ 285


>gi|83312747|ref|YP_423011.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82947588|dbj|BAE52452.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 363

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 14/332 (4%)

Query: 11  VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +TK   R G         R+              T   A+  +L G   +  +I+    +
Sbjct: 35  ITKRFNRDGELIGWQAKIRRHGFPTQS-KTFDRKTDADAWARSLEGEMDRGAFIDRRPAE 93

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             TL   I  Y  +        +   +    F +       +    + T HI    + R 
Sbjct: 94  QMTLADAIRHYLDAVAPTHKGADVEAARLGRFLREEPDLCRYALSNLRTHHIEDYRDRRL 153

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P S  + +  +  + +   R+  +  NP   V RPK   E     + ++  Q  S 
Sbjct: 154 EAVAPGSLCREINLLHAVLESVRRRVGLVDNPVSHVRRPKVNDERDVRLSLDEEAQLLSA 213

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 P +       L + +R  +      +H+     +    +T       +P     
Sbjct: 214 LDATRNPWIKPFVIVALETAMRRGEMLALRWEHVDLVQQTAHLPETKNGKGRTVPLSSRA 273

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           +     +      I      ++       +     +AG++    H +R  + +  A+ G 
Sbjct: 274 V---KTLEALPRSIGGAVFPVSLDSLKHAWTRARDRAGLHHFHLHDLRHEATSRLAERGW 330

Query: 303 TAHELMATYGWKTVDQAETYT--KGADRIRLG 332
              EL A  G + +   + YT  + AD  +  
Sbjct: 331 NILELAAVTGHQDLQMLKRYTNLRAADLAKKM 362


>gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3]
          Length = 385

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/369 (11%), Positives = 105/369 (28%), Gaps = 57/369 (15%)

Query: 14  ERTRHGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  +G   Y  R         +                 + +        + N  ++  
Sbjct: 5   RKHSNGTWEYRIRYKDKSSNKYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKE-- 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            ++K   S++ +     ++   +    E      I+ + G+   + ++    +  +   +
Sbjct: 63  -SIKEYFSKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDVSRTEYQKWINELR 121

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKT-----------EGIRP 173
             ++  +  +  + M      AV +  +   NP   ++ PK              +  + 
Sbjct: 122 FNYSEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKF 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
             +    Q  S +    Q  + F  +  +GLR  ++       +     +IK  KT    
Sbjct: 182 LNQVKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEECTIKVNKTLVYP 241

Query: 231 -----------------------------TIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                                            +   +  +K         +  F  +D 
Sbjct: 242 TNSTPYLSTPKSKAGLRIIKLDIHTVQLLKKHRINRKEVVLKYKNYKKPEDDIVFYQHDG 301

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
           + +       +FK    +A +   S H +R   A    +A A    +    G  ++   A
Sbjct: 302 RWLRTNVVREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITA 361

Query: 320 ETYTKGADR 328
           +TY     +
Sbjct: 362 DTYLHVTKK 370


>gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4]
          Length = 267

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 20/260 (7%)

Query: 107 GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           G   + ++ +  +R      + +    SS    L+S+R    + + +  +  NP   V  
Sbjct: 9   GLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSA 68

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           P+++    +    ++M Q      +     + R   E +  +GLR ++     V+ +  +
Sbjct: 69  PRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLS 128

Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSI 271
              I+          V       + +      +           F++    +++      
Sbjct: 129 EGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQK 188

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                  K  V  + S H +R   AT   ++      +    G + +   + YT   D  
Sbjct: 189 RMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH-LDFQ 247

Query: 330 RLG--IKNSRRISSVVDSDD 347
            L      +   +   + DD
Sbjct: 248 HLAQVYDQAHPRARKKNKDD 267


>gi|183602443|ref|ZP_02963809.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683244|ref|YP_002469627.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191203|ref|YP_002968597.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196609|ref|YP_002970164.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218362|gb|EDT89007.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620894|gb|ACL29051.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249595|gb|ACS46535.1| phage-related integrase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251163|gb|ACS48102.1| phage-related integrase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177317|gb|ADC84563.1| DNA integration/recombination/inversion protein [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794196|gb|ADG33731.1| phage-related integrase [Bifidobacterium animalis subsp. lactis V9]
          Length = 366

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 101/339 (29%), Gaps = 35/339 (10%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K    +R   GR  R           A+ +        +    +     T +  L   + 
Sbjct: 15  KWEVRYRTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAELWQSWI 74

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136
           ++        +   S    +   +  + G      I    ++  V      ++ S  I+ 
Sbjct: 75  ETKRTR-CKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLAGEYSASVVIRA 133

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              ++ L K AV+   +A NP   +  P++K +     T E +    +   E    R A 
Sbjct: 134 RDMLKGLLKAAVKNRLIASNPADDITVPRKKRKDHVYLTAEQL---MALADEAGWRRPAV 190

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------TVELPDGFMKLL 245
             L  +G+R  +     V+ L      ++ ++    +             +    +  +L
Sbjct: 191 LALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEKRTITYPAIL 250

Query: 246 AMTPIGKET-----------FFINNDKQKMNATQFSIWFKAKATKA-----GVNKSAHGV 289
               +                     ++       S WF     +A         + H +
Sbjct: 251 EPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMTVHDL 310

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           R  +A++   AGA    +    G ++     +TY    D
Sbjct: 311 RHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFD 349


>gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ]
 gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ]
          Length = 421

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 96/369 (26%), Gaps = 59/369 (15%)

Query: 19  GKIIY--YFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-----PT 69
           G   Y   +R   G+  RI +      T   A   A       ++ IN   +K       
Sbjct: 50  GAKTYLVRYRLPGGKQSRIIIGRHTLYTPAQARDKAEKILRNIKDGINPKVEKQHPKVSH 109

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
           T K  + +      +   A   R   ++   ++  +  D       +IT   +      R
Sbjct: 110 TFKSFLED-----EYSPWAEAQRKDGKATVKRLKSRFSDFLELPLTEITPLIVDKWRTGR 164

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------------- 168
                 P++  + LT+++     AV  E++  +P   V+  K  +               
Sbjct: 165 LKDSKRPATCNRDLTAIKAFLSKAVEWEHLEHHPLAKVKPLKVDSVAKVRFLSADEEKRL 224

Query: 169 ------------------EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                                R      +    +  S     +      L +G+R  +  
Sbjct: 225 LKALDDREEVARAERATANLWRKERGYPLYTDLNSVSFADHLKPMILVSLNTGIRWGELA 284

Query: 211 RAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-KMN 265
                 +      +              V L    +  L           +   +  K  
Sbjct: 285 SLAWDSVDMKKALVTVIGDKAKSGKTRHVPLNSIALNALKDWKKQSSGDVVFPGRDGKKT 344

Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +  +KA    A +     H +R   A+    AG   + +    G   +     Y  
Sbjct: 345 LDNVNKSWKAVLDAAQIKNFRWHDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAH 404

Query: 325 GADRIRLGI 333
            A   +   
Sbjct: 405 LAPEHKAAA 413


>gi|146276169|ref|YP_001166328.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145554410|gb|ABP69023.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 413

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 116/367 (31%), Gaps = 40/367 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTP---------- 56
            +       GK  +  R  H    RR+ L      +   A   A                
Sbjct: 27  GLYLVVQPTGKKGWQVRYRHAGVHRRMTLGGFPVLSLAQARQKAREALAAASEGRDPAEE 86

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K      P      +  +I  + K     +   +   +   +  +++ K G+ D R IT
Sbjct: 87  VKAAKAPKPENDRDKVATVIDLFLKRHASRNRRADDVAA--QFQREVLGKWGERDIRSIT 144

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +   ++    + +P SA +    +  LF WA  ++ + +NP   V+ P  +    R 
Sbjct: 145 KRDVIDVLDGVVDRGSPISANRLRAHLNTLFNWAKSRDIIEVNPLDGVKPPAPEKPRDRV 204

Query: 174 WTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230
            T E+++  +K     G      +  LL +G R  +      + +            K G
Sbjct: 205 LTNEEIRLLWKVSGKMGYPFGDIYRLLLLTGQRLREVAELPWREIDGATWTLPGPRSKNG 264

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK---AG- 281
               + L     +++   P      F       ++       +        A +   AG 
Sbjct: 265 DEHVIPLSPEAREIIEAAPKVGRFVFSTTGLTPVSGFTRAKERLDGLMADAANEDLPAGA 324

Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRL 331
                   + H +R+ +AT  A      H + A    ++      A  Y +   AD  R 
Sbjct: 325 EPVTVPPFTIHDLRRTAATGMAGLRFPPHVVEAVLNHRSGTRRGVAGVYNRFDYADEKRQ 384

Query: 332 GIKNSRR 338
            ++   R
Sbjct: 385 ALETWAR 391


>gi|329116924|ref|ZP_08245641.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907329|gb|EGE54243.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/381 (12%), Positives = 117/381 (30%), Gaps = 50/381 (13%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +T+ + + G I+Y  +         G   R  +    +         A        E ++
Sbjct: 3   ITEYKKKDGTIMYRSQIYLGVDSVTGKKARTSVSGRTKKELKNNIKLAKYEFQANGETVS 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
              +   T   L+  + ++     +   +        D  ++   G     KI+   I+S
Sbjct: 63  KKVQVK-TYSQLVELWLENYKLT-IKPQTYRVTTRLIDCHLLPYFGKMKVEKISNTDIQS 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK----- 176
            V        +     +    + ++ V    +  NP   V  PK++  G           
Sbjct: 121 FVNGLSSKLVNFRTVNSINTRVLQYGVSLNLIPFNPARDVILPKKQKAGRDSVKFIDTND 180

Query: 177 -----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  M++            + ++ LL +GLR  ++       +     +I   K+ +
Sbjct: 181 LKTLLNFMEKQSFRRYRYQVEYVFYKLLLATGLRIGEAVALEWSDIDLENATIDINKSFS 240

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMN 265
                            + +    + LL +  + +   F                ++ ++
Sbjct: 241 QELRLVSTTKTKAGTRLISIDKETVNLLKLYQVRQRQLFHEVGGGVPKVAFATPTREYLS 300

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                    ++  + G+ + + H  R   A++  +AG +  EL    G   +    + Y+
Sbjct: 301 RLTLQNNLNSRCERLGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVYS 360

Query: 324 KGA-DRIRLGIKNSRRISSVV 343
             + D+ +  +    +  + +
Sbjct: 361 HLSKDKEKEAVSYYEKAINSI 381


>gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 290

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 24/282 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+ E+ +          + I++    +  ++        +         V ++       
Sbjct: 3   LLEEFEQWLRAIDHTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKSYMLT 62

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQF 182
             K  PSS  + + ++R    + V + Y+  NP  ++++ K   +       +K+D+ + 
Sbjct: 63  VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSKQDVFRL 122

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +       + R     E  L +GLR S+     ++ ++      K +  G          
Sbjct: 123 RKTVYMYGKIRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLRVLGKGRKYREIPL 182

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKSAHGVRKF 292
             ++  +     E     +                      K  A +AG+    H +R  
Sbjct: 183 NSEIRKILSQYLEKRKHIDCDFLFTTSTGKPLQPNSIYRLVKRYAERAGIELHPHMLRHT 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRL 331
            A    D G    ++    G + ++    Y   ++      L
Sbjct: 243 FAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKAL 284


>gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 87/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  +
Sbjct: 74  YLIDKPRTPAERRQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINN 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  NPC SV          +     +  Q       
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIEHDVMLKNPCKSVTCKVDSQMLRKDVLSPEEIQKLVACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFVFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|254975655|ref|ZP_05272127.1| integrase [Clostridium difficile QCD-66c26]
 gi|255093041|ref|ZP_05322519.1| integrase [Clostridium difficile CIP 107932]
 gi|255101198|ref|ZP_05330175.1| integrase [Clostridium difficile QCD-63q42]
 gi|255314783|ref|ZP_05356366.1| integrase [Clostridium difficile QCD-76w55]
 gi|255517458|ref|ZP_05385134.1| integrase [Clostridium difficile QCD-97b34]
 gi|255650568|ref|ZP_05397470.1| integrase [Clostridium difficile QCD-37x79]
          Length = 370

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 6   RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 66  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N   S+E P+ K      + +E M +      + 
Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361

Query: 339 ISSVV 343
           IS  +
Sbjct: 362 ISESL 366


>gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa]
          Length = 336

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 330

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 84/275 (30%), Gaps = 9/275 (3%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               + K         E+           ++R +  +Y   ++I + G      I    I
Sbjct: 37  TAPEKLKAPLFAEFAEEFWLDYSPH-WKPSTRDASRAYIDKRLIPRFGALSVDAIERADI 95

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +S      +  + +  + V+ ++A +  Y   N        + K +    +   D 
Sbjct: 96  NRWRDSMADVGGAFNRSIPVLSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADE 155

Query: 180 QQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +             +    A   L+Y+G R S+      ++++    ++   KTG   T
Sbjct: 156 YRRLGKVLAEHNGANAFVVPALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTG-PKT 214

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           + L    + +L       +   +     +         ++    KA +     H +R   
Sbjct: 215 IYLNPQAIAVLDGLQRRGDDQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSF 274

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A+++   G     +    G    +    Y   AD 
Sbjct: 275 ASVAIAKGIPLATIGKLLGHALPETTARYAHLADE 309


>gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 336

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 93/309 (30%), Gaps = 27/309 (8%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHI---RSGVESRKHTPSSAIQFL 137
             +    ++      F+ +++     GD    +++ + +   RS       + ++  + +
Sbjct: 83  GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRNGISAATINRDM 137

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  +F   ++ +  +    +    P            E  +  K          L   
Sbjct: 138 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R ++        + N   +    K G   TV         ++     K     
Sbjct: 197 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 248

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    K++  +F    +        N++ H +R   A+     G     L    G  ++ 
Sbjct: 249 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 308

Query: 318 QAETYTKGA 326
           Q   Y   A
Sbjct: 309 QTMAYAHLA 317


>gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/405 (13%), Positives = 112/405 (27%), Gaps = 75/405 (18%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + + G+     Y  +  G R R     ++       S LT                    
Sbjct: 14  KRKDGRYQAAAYVFRPDGTRTRKFAYGKT--REEVASQLTEMQEMTRQGIPAASSTMAFG 71

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--------- 122
             ++ +  +     L   +  S+E      I    G     +++   +R           
Sbjct: 72  DYLTYWLATIAPERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAACL 131

Query: 123 ----------------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                                    R+ +  +       +R   + A+R+E +A N    
Sbjct: 132 CCLRGADEERPEDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIREELIARNVARI 191

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV------ 214
           VE P  + + +RP    +++          +    +  L+ +GLR  ++           
Sbjct: 192 VETPTVEPKEVRPLDAAEVRLLLKTARPH-RLYALWLLLVSTGLRRGEALGLTWADVDLT 250

Query: 215 ----------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                     Q ++  +     +   ++ T+ LP   ++ L      +E        +  
Sbjct: 251 AGTLRVRRNVQRIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAKWQ 310

Query: 265 -------------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                              +    +         A V +   H +R   A++    G  A
Sbjct: 311 QTPGQPAGLVFTTLTGRVTDPRSLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQGVDA 370

Query: 305 HELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSDD 347
             +M T G  T+    +TY       +R   +       + D DD
Sbjct: 371 RTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALGLEDVDD 415


>gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41]
 gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 10/211 (4%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    +  ++ LF+W+  + Y   NP   ++ PK      +  ++ +++  +     
Sbjct: 21  KPSSLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREACQT 80

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
            +  +  FEF+  +G R  +  +   + +       I   K      V         L  
Sbjct: 81  -TMEKALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYFNTRCSIWLKR 139

Query: 248 T------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299
                              K++M+        K  + +A + KS   H +R   AT   +
Sbjct: 140 YLDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPHQLRHSYATHMIN 199

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            GA    + +  G +  +  + Y + + ++R
Sbjct: 200 NGAPIDVIQSLLGHEKSETTKIYAQLSGKLR 230


>gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 307

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 86/277 (31%), Gaps = 31/277 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126
            + +         + N+ +++       +     F            I +K +R+ + SR
Sbjct: 16  WTRWLGGVKC--FSSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSKDLRAWLASR 73

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +    +  +  + L+S++  FK+  + + +     L V    +     R  T +++    
Sbjct: 74  RKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRFKPNTLPRSLTFKEIIELI 133

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
               F        +       L  SGLR S++    V  L N+   I  +       + L
Sbjct: 134 EKFSFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVADLTNSEIKIIGKGG-RERMIRL 192

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAH 287
                  L+                 ++    +   +    +A +          + + H
Sbjct: 193 LPIVRVALSDYIASCPFQPDAGGFLFLDRNG-NKLCRTAVARAFLSIRRGFNLPDHITPH 251

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   AT     G    ++    G  ++   E YTK
Sbjct: 252 ALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTK 288


>gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 303

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 33/294 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSG 122
           ++     EY +      ++ ++  ++      ++  +G             +T + IRS 
Sbjct: 4   SVGDRWGEYLRH--GRGMSDHTIEAYLGDLRSLLSFAGLAWEASAAELAEALTQRRIRSW 61

Query: 123 VES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +     R    S+  +   S+R    WA R+  +A +P   +  P+       P  + + 
Sbjct: 62  LADTLARGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDESEA 121

Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
           +   +   +          +     E +   GLR S++C   +  L     +++      
Sbjct: 122 RLLLNHARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGKGN 181

Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
               V         L                 +  F+ +   +++         A A +A
Sbjct: 182 KERVVPYGPPAADALDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAARA 241

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           GV + + HG+R  +AT     GA    +    G  ++   + YT   D  RL  
Sbjct: 242 GVHDVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTH-VDTARLSA 294


>gi|284006959|emb|CBA72231.1| phage integrase [Arsenophonus nasoniae]
          Length = 341

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 98/322 (30%), Gaps = 17/322 (5%)

Query: 15  RTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             + G+I +Y F   + +RIR      +      ++AL                  T + 
Sbjct: 8   TYKRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALE-YNSYWRNEKLGDVSFHTWQE 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
            +  +           N   +       + +  G      I    I    ++++ +    
Sbjct: 67  AVLLWLNEK--PERKEN--RNMLYGLRWLDQYLGKTKLIDINKYLIDEIKKTKQISGVKN 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    L  +RV+ K A     +   P   ++  K  T  IR  T+ + ++      E  
Sbjct: 123 RTVNAVLQQIRVVLKCAYEHGLLDKIP--PIKLLKEPTRRIRWLTEYEEKRLMVELPEHL 180

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAM 247
           +P     F L +GLR S+        +  N          +     +     +    +  
Sbjct: 181 KP--IVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADESKTNQAIGIPLNQAALTIIR 238

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
              G    ++   +        +  ++    +AG+ +   H +R   AT    AG   + 
Sbjct: 239 EQQGHHREYVFTYQGNRIKNAGAKGWRKAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYV 298

Query: 307 LMATYGWKTVDQAETYTKGADR 328
           L    GW   D    Y   + +
Sbjct: 299 LQELGGWSKADTVRKYAHLSTQ 320


>gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195]
 gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195]
          Length = 318

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 31/322 (9%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
               G      R    +G+R R       T    Y   +      ++++++P  +   L 
Sbjct: 4   TKVDGGYRVDIRPSGRNGKRYR-RTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL- 61

Query: 73  WLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            LI  +    H  +L    N+R +  +      +  G+    ++ T    +    R  K 
Sbjct: 62  ELIDLWF-HFHGKNLKEGVNTRKNLITT----CKLMGNPQSHQVNTNFYLNYRARRLEKI 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP +A   LT ++ ++   +     A    L    P +     + +  +           
Sbjct: 117 TPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G    L  +  L +G R S++       L ++  +    K G   T+ +   F   L   
Sbjct: 177 GEML-LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNG 235

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATA 304
                T   +              F A    +G+      ++H +R   A+     G   
Sbjct: 236 NGRLFTDCYHQ-------------FLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNI 282

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G  ++     Y   A
Sbjct: 283 LTLQKILGHGSIQMTMRYAHLA 304


>gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521]
 gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 292

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 81/258 (31%), Gaps = 20/258 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129
           I+ Y+        + N+  ++ +     ++              +T       + ++  +
Sbjct: 5   INNYKDYLLESGKSENTIYAYVTDVTLYLKFLNRKKVDIYKSDNLTVASYIQNLLNQGKS 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185
             S  + + S+R  + +   Q  +   P +  +  K   +  +  T     + ++  +  
Sbjct: 65  ERSINRIVISLRNFYSYLKSQSLIQEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
             +G +     E +  +G++ S+     V+ +   +  ++          + +     K 
Sbjct: 125 CPKGIRDNALLELMYATGMKVSELINLNVEDVNLELNFVRCTDNKHYERIIPIGRSACKA 184

Query: 245 LAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L+     +               +  K+         K  + KAG++K  + +  R   A
Sbjct: 185 LSEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244

Query: 295 TISADAGATAHELMATYG 312
                 GA    +    G
Sbjct: 245 VHLLQNGANVRAVQKLLG 262


>gi|24371538|ref|NP_720278.1| Int [Enterobacteria phage ST64T]
 gi|24250765|gb|AAL15478.1| Int [Salmonella phage ST64T]
          Length = 387

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F   +G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    ++ P+ K
Sbjct: 121 LMDEACRKNGKQPPVFKPKPAALATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E  +     EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +++   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|21910802|ref|NP_665070.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876380|ref|NP_795541.1| putative integrase [Streptococcus pyogenes phage 315.4]
 gi|28895509|ref|NP_801859.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|306828339|ref|ZP_07461592.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes ATCC 10782]
 gi|21905006|gb|AAM79873.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.4]
 gi|28810758|dbj|BAC63692.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|304429470|gb|EFM32526.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes ATCC 10782]
          Length = 384

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%)

Query: 11  VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y  R         G+++R       T   A  + +      +      
Sbjct: 21  IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 80

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120
               TT   +   + +     ++  ++    +  +++         G     KIT    +
Sbjct: 81  SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 136

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             V    +++  +   +L+    +FK+AV    +  NP     R K   + +   TK+  
Sbjct: 137 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 194

Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
            + +           E  + RL +  L Y G R  +                        
Sbjct: 195 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 254

Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                       K          +             +    +       +         
Sbjct: 255 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 314

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
              K G+ + + HG R   A++  +AG  A       G   +      YT  +   +   
Sbjct: 315 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 372

Query: 334 KNSRRISSVVD 344
             + +++ +V 
Sbjct: 373 NVADKLAELVA 383


>gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
 gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM
           18228]
          Length = 418

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 28/288 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
           T+  L   +  +     L  ++  S+     +    +       DFD   I    +    
Sbjct: 110 TIDKLFDYFLAT-GGNKLRPSTLKSYTATRRHLAAFVMLRYHISDFDITAIDRNFVNEFY 168

Query: 124 ----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                       R+ T + A++ +   R L   A   E++A NP   +   +++      
Sbjct: 169 AYLQGYLRQDNKRQCTENGALKHMQRFRKLLDMACSNEWIARNPADGMHW-EKRKTERGF 227

Query: 174 WTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            T+E++++          S  R  F F +Y+G    D       ++   I          
Sbjct: 228 LTEEELKRIADAQLTPALSVLRDIFLFSVYTGTSFVDMTMLTDNNIVVGIDHSLWLNFNR 287

Query: 232 IITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
             T +       +  +++L      +                 +   K  A  A V+K  
Sbjct: 288 TKTGQRCSIPLLEPALRILDRYENYRRASPQARLFPVPTNQVTNRDLKIIARAAHVDKNI 347

Query: 285 SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           + H  R   AT      G     +    G  ++   + Y K  D+  L
Sbjct: 348 TFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVL 395


>gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037]
 gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037]
          Length = 301

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 83/291 (28%), Gaps = 35/291 (12%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               +         L+  +  ++ S    + R +GD    ++  + +R           +
Sbjct: 6   AAEAFLTHLATVRRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRA 65

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------Q 181
              A +  ++ R    WA  +  + ++P   +  PKR        T   +          
Sbjct: 66  KATAARRTSAARAFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVLAGAAAH 125

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDG 240
            +S      +     E L  SG R S+ C   +  +     +++ +        V     
Sbjct: 126 AESGEPVALRDHAILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRERVVPYGVP 185

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----------------- 283
             + L    +                  F     A+  + G                   
Sbjct: 186 AARALEAYVVRGRPVLSARGDGVAGPAVF---LGARGARLGPRAVHALVSRVVAPVVGAE 242

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
               H +R  +AT   D GA    +    G  ++   + YT  + +R+R  
Sbjct: 243 TLGPHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREA 293


>gi|260683666|ref|YP_003214951.1| integrase [Clostridium difficile CD196]
 gi|260687326|ref|YP_003218460.1| integrase [Clostridium difficile R20291]
 gi|260209829|emb|CBA63704.1| integrase [Clostridium difficile CD196]
 gi|260213343|emb|CBE04934.1| integrase [Clostridium difficile R20291]
          Length = 380

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 16  RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 75

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 76  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGKYKIQDLHPVHIQNYIDKLSYKLN 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N   S+E P+ K      + +E M +      + 
Sbjct: 135 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 193

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 194 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 253

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 254 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 314 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 371

Query: 339 ISSVV 343
           IS  +
Sbjct: 372 ISESL 376


>gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
 gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 89/316 (28%), Gaps = 50/316 (15%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITT 116
           L  L  +Y          +  +   +        R                +     I  
Sbjct: 7   LPKLARDYLLYLLTIKGRSQRTVDGYAIDLRTFFRFMKLHRGQVPADCVFEEILINDIDD 66

Query: 117 KHIR------------SGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVER 163
             IR              + SR +   +  + ++S+R  FK+  V  + +  NP  ++E 
Sbjct: 67  NFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLTDNPVKNLEI 126

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           P  K       + E   +        S     +        L  G+R S+     +    
Sbjct: 127 PAAKKSLPIHLSVEQSVKLLDEVGARSSGTQYRDYCILTLFLNCGMRLSELVGINLSSFD 186

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NNDKQKMNA 266
            +  ++K   K      V L +     +      +                    +++ A
Sbjct: 187 RDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLSCRSGKRLGA 246

Query: 267 TQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322
            Q  +        AG++    S H +R  +AT+    G      L    G   V   E Y
Sbjct: 247 RQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIY 306

Query: 323 TKGADRIRLGIKNSRR 338
           T  +++     + + +
Sbjct: 307 THVSNKK--VQEAAAK 320


>gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T85]
 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
 gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85]
          Length = 299

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 28/289 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
            ++ E+ +        +V++R ++      +     D       +T   +RS + +    
Sbjct: 3   AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  ++++    WAVR+  +A +P   ++ PK +        ++   +  +  
Sbjct: 63  GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------FSIK 225
             G         + RL  E L  +G+R S+ C   V  +++                S  
Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHSTC 182

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK 284
           +     +          + L     G         ++       +   +  A   G  + 
Sbjct: 183 SGSQPPMRCTPGLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 243 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 291


>gi|322383343|ref|ZP_08057137.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152377|gb|EFX45182.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 103/355 (29%), Gaps = 57/355 (16%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR 104
               A      +        +K  T +    E+         + +++    +     ++ 
Sbjct: 60  EAQEAAALLVAELSQGTYVEEKNNTFEEYAKEWLSEYQATGTVKISTVRIRKKGIKLLLP 119

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSV 161
                    IT K  +  +        S    +++    R++F+ A+  + +  +P  S 
Sbjct: 120 YLAKLRISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSA 179

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSC 210
             PKR+       T++++ ++                   +    F  L Y+G+R  + C
Sbjct: 180 VIPKRQRTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELC 239

Query: 211 RAGVQHLQN-------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                 +                     N   +  +   +   + +    +  L      
Sbjct: 240 ALKWSDIDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAE 299

Query: 252 KETFFINNDK------------------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           ++   +   K                          ++        AG+    + H +R 
Sbjct: 300 QKRIKMFFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRH 359

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
              ++ A+A  +  ++M   G ++ +  +  Y       +   + S++ + ++ S
Sbjct: 360 THTSLLAEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKK--KEASQKFAELMSS 412


>gi|56414549|ref|YP_151624.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363479|ref|YP_002143116.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128806|gb|AAV78312.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094956|emb|CAR60493.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 387

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/376 (13%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+  Y  F   +G+R +           A                       T +   
Sbjct: 5   RRGETWYSSFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       + IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLMDEACRKNGKQPPVFKPKPAALATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + ++      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
             +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 HPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDAN 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +++   +AG+ +   H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|114764561|ref|ZP_01443765.1| probable site-specific integrase/recombinase [Pelagibaca
           bermudensis HTCC2601]
 gi|114542937|gb|EAU45957.1| probable site-specific integrase/recombinase [Roseovarius sp.
           HTCC2601]
          Length = 341

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 97/322 (30%), Gaps = 14/322 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R+GK     R          +  +                    I+       T++ L
Sbjct: 5   RNRNGKWHAQVRIKGHASQTKSFTTKRDAERWAKQTEAELQASALRIDIRVLDRVTVRDL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  YR+          S    +     + +   D    K+T +      + R     P +
Sbjct: 65  LERYRREVTATKRGAASES--KRIDGFLRQTWVDRTLSKVTPQVFSRYRDERLRTVRPGT 122

Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SE 188
            I+ L  +R +F+ A  +    +  NP  +V +PK      R     ++    +      
Sbjct: 123 VIRDLGLLRSIFEVARLEWDVPLQNNPLANVRKPKAPDPRERRLRPGELDLLLTACQSYR 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R      + +G+R  +        +  +  ++  ++T       +P   + +  + 
Sbjct: 183 NDWLRAGIVLAIETGMRRGEILSIRWCDVSMDTSTLTIRETKNGHARRIPLTAVAVDVLR 242

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGA 302
            + +     +     ++A  F   ++    K   +         H +R  + +   + G 
Sbjct: 243 DMLEVCDDSSVRIFPVSANAFRQCWQRCKGKVAEDYKQIESLRFHDLRHEAVSRFFEMGL 302

Query: 303 TAHELMATYGWKTVDQAETYTK 324
           +  E+    G +       YT 
Sbjct: 303 SVPEVALISGHRDPRMLFRYTH 324


>gi|23098689|ref|NP_692155.1| hypothetical protein OB1234 [Oceanobacillus iheyensis HTE831]
 gi|22776916|dbj|BAC13190.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 378

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 108/361 (29%), Gaps = 50/361 (13%)

Query: 11  VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K  T+ G I Y F           ++ +L            +  L        Y+   
Sbjct: 5   IKKYDTKKG-IRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYLEPS 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK--SGDFDYRKITTKHIRS 121
           ++   + +  +  +  + +  S+   +  + +      +I      +     ITT+ I  
Sbjct: 64  KE---SFQSFLQHWFYTHYITSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDY 120

Query: 122 GVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               +     S     +    + + F  AV+   ++ NP ++   P+ +T+ +  W+K+ 
Sbjct: 121 FYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPVVNTTPPRVQTKQVSIWSKDQ 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++QF    +   +  + F   +Y+G+R  +        +      I   +    I  +  
Sbjct: 181 VKQFLETSNLE-RLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGY 239

Query: 239 D-------------------------------GFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                              +L   +    +        +  +  
Sbjct: 240 FFTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPR 299

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             +  F+     A V K   H +R   A+I    G    ++ +  G  +     + Y   
Sbjct: 300 NVTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHV 359

Query: 326 A 326
            
Sbjct: 360 V 360


>gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 325

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 102/324 (31%), Gaps = 51/324 (15%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            +LK  ++ + +       +  + I +  +    +I   G+     +   H+   +   +
Sbjct: 1   MSLKTYLNMWLEDYVKEERSERTYIIYRDTMLKHVIPCIGNIKLSDLKVVHVEKYLRELR 60

Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               +  S+      +++     AV+ + +  NPC  VE PK+        T E+     
Sbjct: 61  KIKNNNGSTIQLNFRNLKTALNKAVKLQLLNDNPCRFVEMPKKNNFKGNYLTAEEFNLIY 120

Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTII 233
           +        GS  R+  +  + +G R  + C    +++  +  +I         + G  I
Sbjct: 121 NSLNAATYLGSSFRVLLDLAVETGCRRGEMCGTEWRNIDFDNKTITFDKALIKGEHGWKI 180

Query: 234 TVELPDGFMKLLA-------------------------------MTPIGKETFFINNDKQ 262
                +   + L                                   I  +   I  + +
Sbjct: 181 GRLKTETSYRALPLSDDLINQLKKLRIKQLENKLTFGSEYHLNSFDGIEYDLICIQRNGK 240

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
            M         K    +  ++K    H +R  SAT+  + G     +    G  ++    
Sbjct: 241 FMVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHASMSTTS 300

Query: 320 ETYTKGADRIRLGIKNSRRISSVV 343
           + Y+   +  ++  + +  +S  +
Sbjct: 301 DIYSHVTE--KMDREATNILSRTI 322


>gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 407

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 90/343 (26%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD-FDYRK--ITTKHIRSGVESRKHT------ 129
                    ++           +      + +   +  I  + I   +  +  T      
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVTYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGETPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
 gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/357 (10%), Positives = 90/357 (25%), Gaps = 52/357 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F    G+R  +     S         L     + E   +      TL     
Sbjct: 18  KDGLYQARFINRFGKRQTIYARTYSEITKK----LRDEQYEDEKQINVVNSNMTLNEWYE 73

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +  +    +    ++ ++   ++++  + G      +    I++     K + SS    
Sbjct: 74  VWLTTCK-KNCRDTTKRTYAIQYNRLREELGWRKISNLNLVIIQNAFNQLK-SDSSRGDC 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              +  +   A+  + +  N  L  + +   ++    R  T E++Q      ++ S    
Sbjct: 132 KAVLVDILNRAMETDLINKNVALSVNTKIEGKEQTEKRVLTTEEIQL-LYQSAKDSSLYP 190

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN--------------------NIFSIKTQKTGTIIT 234
            F   L +G+R  +        +                             +       
Sbjct: 191 FFILALNTGMRMGEILGLTWDCVDFENGIIHVEKTLCYLPNNGKAIYEFHPPKSKAGKRN 250

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ--------------KMNATQFSIWFKAKATKA 280
           + +     ++L    I  E        Q               ++ +           + 
Sbjct: 251 IPMSKQVKEVLQEQRIWHEDMTTRFQPQQGFEDLVFTSKTNRPIHESNIRSSIDYIVDRI 310

Query: 281 G--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
                       + H +R   AT     G     L    G  ++      Y    D 
Sbjct: 311 NAQNPTEKFERFTPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHVLDE 367


>gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70]
 gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 292

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 87/288 (30%), Gaps = 26/288 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESR 126
            L+  +++       A  +  S+        R  G+          + +    +  +   
Sbjct: 3   ELLDAFKQWLTEEGKAPKTIESYVGDIKSYQRFLGEKAVSDQQPLSRFSFVRYKQHLLDE 62

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------ED 178
               ++  + + S++V   +  ++  V+ +         +   G              + 
Sbjct: 63  GFAVATINKKINSLKVYNDFLQKKGIVSESYIQLKRDRVQIAAGSEHVVTALSEEEVEKL 122

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL 237
           +   +       + +L    LLY+G+R S+     +  +     + +   K G +  + L
Sbjct: 123 LFYLEDRTKVSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTATLMIRGKGGKVREISL 182

Query: 238 PDGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
               ++L+    IG+                  +KM+      W    +   G+    H 
Sbjct: 183 RQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWLANISKDIGIKLHPHL 242

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA-DRIRLGIK 334
            R   AT     G     +    G  TV+     Y +   +  +  ++
Sbjct: 243 FRHTFATRLLRKGVDLTTVSKLTGHSTVNMTAKFYIQTTREEKKAAVE 290


>gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 401

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 95/358 (26%), Gaps = 44/358 (12%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT------------TLK 72
            R      ++       ++      AL   T   +  ++P+K  T            TL+
Sbjct: 14  VRVRRVSPVQTRR-GAESYERKLRQALEAGTYGGKKASTPKKSSTRARKQPAPTGTPTLE 72

Query: 73  WLISEYR-KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI----------- 119
                Y  +         +S  +  S     I+   GD    +I + H            
Sbjct: 73  QFAETYISEHCLVEQHRPSSITNTRSVLSAHILPILGDVAMDEIRSVHFGELKRAVARGR 132

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              G +S+  +  +    L  +  + ++   +E +      +      + E      +E 
Sbjct: 133 GTRGRKSKPVSGKTINNALAVLSRMVRFWYEREGLMPPRIKAGLVRLDEPEADYYEPEEF 192

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
                     G Q  +    +  +G+R  +        ++ +       +          
Sbjct: 193 EALVAGAAKAGLQELVIVLLMGDAGMRQGEIRALHWSDIRKHPEPTIRVQRTRFKADEYA 252

Query: 230 ---GTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                  ++ L    +  L            I+   + +               AG+ ++
Sbjct: 253 PKSKKGRSIPLSPRLVAALEALPRRRGCPHVIHEAGEPLTPKLVRGRIVRCERAAGMAET 312

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             +H +R   AT    AG     +    G   +   + Y       R   +    IS 
Sbjct: 313 GLSHKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVSGAR--SQAIAAISG 368


>gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
 gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50]
          Length = 405

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 98/348 (28%), Gaps = 37/348 (10%)

Query: 18  HGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G     F      G  +R              + +    +               T+  
Sbjct: 9   RGTWYVSFYYEDWTGAKKRKVKRGFRTKKEALNFEAEYKRTAKADM--------DMTMGE 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +  Y +     SL   S  +     + Q++    D     IT   I     +      S
Sbjct: 61  FVEVYFRD-KSQSLKDRSIKNKRDTMNAQLLPYFKDRPMNSITPAEIIQWQNTIIEKGYS 119

Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSE 188
                     M  LF  A     +A NPC  V+R  K   + ++ WT E+ +QF +    
Sbjct: 120 DDYLKTIQNQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEP 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
           GS+  + FE L ++G R  ++       +      +   KT                   
Sbjct: 180 GSKYYVLFELLFWTGAREGEALSITPADIDFERNLLHINKTYYRMHGEDVITSPKTEESN 239

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
            T+ +P+   K +            +     M         K    K GV K   H +R 
Sbjct: 240 RTISIPEFLKKEIQDYISRLYELPEDERIFPMVHEAVQHKLKQVVQKTGVKKIRVHDIRH 299

Query: 292 FSATISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIKNSR 337
             A    + G     +   +G   +     TY     D+ ++      
Sbjct: 300 SHAAFLINKGVPPLMIKERFGHTDIRITLNTYGHLYPDQQKVVADMLD 347


>gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 356

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +    SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAVSAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
 gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016]
          Length = 328

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 24/320 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   G+         G+R R  +  +        +    +     +   P+ +   L  L
Sbjct: 5   KLPDGRWFVDVEPIKGKRFRKRFKTKGEVQRFEATVRQRTIENSAWTPKPKDRRR-LSEL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITT---KHIRSGVESRKH 128
           +  +        L  +S            Q+  + GD     +       +R        
Sbjct: 64  VQLWY------DLHAHSLRDAPRRLSKPLQLAARLGDPIATALDASSYASLRRKRLEEGI 117

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFK---S 184
           +  +    L  +R +F        +   NP   V+  K +   +   T E + +      
Sbjct: 118 SGKTLNNELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGELSWLTTEQIGELLDSIR 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +     L     L +G R S++ +   Q LQ N+ +    K+G +  V +P      
Sbjct: 178 NRCDNPHTELVTLLCLATGARWSEAEKLPAQRLQGNVVTYAGTKSGKVRHVPIPAELADR 237

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +         F           T F    +    +    +++H +R   A+     G   
Sbjct: 238 VRAHWPMHGPFTSCI-------TSFRRALERTTIQLPQGQASHALRHTFASHFMMNGGNI 290

Query: 305 HELMATYGWKTVDQAETYTK 324
             L    G  T+     Y  
Sbjct: 291 LTLQKILGHSTLTMTMRYAH 310


>gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
 gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25]
          Length = 313

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 90/297 (30%), Gaps = 40/297 (13%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125
           +  IS + ++       A N+ +++                  +T          +    
Sbjct: 2   ERWISTFLEAQAAELGAARNTLLAYGRDLQDFAAWLARRKLDFLTLDQADIEDYLTFCAD 61

Query: 126 RKHTPSSAIQF------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  +PS+  +       L+++R LF++A  + +   NP + ++   +         ++++
Sbjct: 62  QGLSPSTRARRPTRARRLSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEV 121

Query: 180 QQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSC-----RAGVQHLQNNIFSIKT 226
            +                 +     E L  +G+R S+        A        +     
Sbjct: 122 DRLLDAARAASAARPREALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGG 181

Query: 227 QKTGTIITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFK 274
           ++    ++       ++ LA                 +  F  +     +    F +  K
Sbjct: 182 KERLVPLSPPARTAMVEWLAQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHFLVILK 241

Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A  AG+     S H +R   AT     GA    +    G   +   E YT   D+
Sbjct: 242 DLAVLAGISPARVSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQ 298


>gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 336

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 27/309 (8%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L+  + K  H
Sbjct: 28  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 82

Query: 84  WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             +    ++      F+ +++     GD    +++ + +      R     + ++  + +
Sbjct: 83  GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 137

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  +F   ++ +  +    +    P            E  +  K          L   
Sbjct: 138 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 196

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R ++        + N   +    K G   TV         ++     K     
Sbjct: 197 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 248

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    K++  +F    +        N++ H +R   A+     G     L    G  ++ 
Sbjct: 249 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 308

Query: 318 QAETYTKGA 326
           Q   Y   A
Sbjct: 309 QTMAYAHLA 317


>gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040]
 gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040]
          Length = 348

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 117/344 (34%), Gaps = 10/344 (2%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            P +  P  V K  TR+   + Y R      G+R +     +       +  L       
Sbjct: 6   KPRIVKPGLVWKWDTRNSIWVPYHRVNWTEGGKRKQRTTKLDWRGDSERLDMLYWQCRAG 65

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           ++         T + LI+ +R+       LA  ++ S+    + I+ K+ D D R+ T +
Sbjct: 66  KHKKQTAPAKYTWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRRTTRQ 125

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            IR+       TP  A ++L ++ +L+ +   +    + P  +        +    +   
Sbjct: 126 AIRTAHSKMSETPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQS--EYEPW 183

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                          R A E +L +G R + +      H      S+  +K+   I V  
Sbjct: 184 PEWMVDKLKDAPEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDERIDVYC 243

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
           P    + ++  P         N  +       S  F+      G        HG+RK S 
Sbjct: 244 PPALREFISRAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAKKYVLHGLRKLSI 303

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
              A+AG +  E+ A    ++ +    Y   A R  L      R
Sbjct: 304 IRLAEAGCSDAEIQAVTN-QSAEMVAYYRSRASRKALSRAAQER 346


>gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis]
          Length = 337

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLTWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK115]
          Length = 328

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 77/264 (29%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L+  +  +      +  S   +    + +     +   R ITT  +R         RK
Sbjct: 51  EKLLELFISAKRIEGCSEKSLKYYRMVIENMFTSL-NLTVRDITTSDLRTYLAHYQRERK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++++  +P   + + K        ++ E ++  +    
Sbjct: 110 SSKVTIDNMRRIFSSFFSWLEDEDFILKSPVRRIRKIKTDKTIKETFSDEGLELLRDACD 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +  R   + +           K  +   V         L 
Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228

Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++           +              +    KA +NK   H  R+  AT + D
Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGEKADLNKVHPHKFRRTLATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312


>gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 299

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 84/283 (29%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIRSGVE 124
           +     +           N+  ++E+  D            K+T+       +   + + 
Sbjct: 7   RAAWLAWLAEEKRYGR--NTIDAYETDLDDYTSYLATQP-DKLTSSPNRTVFRGWIASMS 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R    ++  + ++++R   ++A RQ  + +     +  P+      +  + +D Q   +
Sbjct: 64  GRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQALLA 123

Query: 185 F-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                       ++       L  +GLR S++     Q      +     K   +  V +
Sbjct: 124 AIFARRGDDWIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGDWLSIMGKGNKMRDVPV 183

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN--KSAHG 288
                + +            ++    +++              ++   +  +    + H 
Sbjct: 184 LRAAAQAVDEYIDLCPLALDSDKPLFVSSRGGALGARAVQRLVESLRVELDLPAHVTPHA 243

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   AT     G     +    G  ++   + YT   D   L
Sbjct: 244 LRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTH-VDEAHL 285


>gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii]
          Length = 320

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   +  +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSSRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 354

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSS 132
           EY K+A       +       + ++I           +T     +  ++ +     +P +
Sbjct: 75  EYVKNAAAEKNKKHPLHKVVLWIEKISPTL---KMDALTPTWFENFQQTLQRETELSPYT 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EG 189
              +  S+R LFK AVR   +  +P + V+              ED+++  +       G
Sbjct: 132 CENYACSLRTLFKKAVRDGVLVKDPTIGVKHIHCPESIKEFLMPEDIRKLAAEPIGGILG 191

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----- 244
           +  + AF F   +GLR SD        +     ++   +  T   V LP     +     
Sbjct: 192 ADVKKAFLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDEAIAFLHL 251

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           LA     +              T  + +      +AGV      H  R   AT+  ++GA
Sbjct: 252 LAEENPNRTDEDFIFPHVATTGTNMNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGA 311

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             + +    G   +     YT+  DR +   +    +
Sbjct: 312 DLYTVQKLLGHTKISTTAQYTQVTDRKK--KEAIDLL 346


>gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
              A    L G+T   +  + P ++       +  +  +      +  +   +    + +
Sbjct: 25  LRDAMAETLEGATITYDSGSIPAEET----DAVEAFITAKRIEGCSEKTLSYYRKTIESL 80

Query: 103 IRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           I   G    ++ITT  +R         R+ +  +       +   F W   ++++  +P 
Sbjct: 81  IAGVG-KAVQQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILSSFFSWLEDEDFIVKSPV 139

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             + + K        +T E ++  +   +   +     + L  SG+R  +      + + 
Sbjct: 140 RRIHKVKTAKVVKDTYTDEALELMRDNCTTA-RDLAMVDLLASSGMRVGELVTLNREDIN 198

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSI 271
            N               V         L     G+                ++       
Sbjct: 199 FNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPALFVSLKAPFDRLMIGGVET 258

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +    +  + K   H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 259 RLRELGKRLNIPKVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium]
          Length = 337

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|167463322|ref|ZP_02328411.1| integrase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 407

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 103/355 (29%), Gaps = 57/355 (16%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR 104
               A      +        +K  T +    E+         + +++    +     ++ 
Sbjct: 54  EAQEAAALLVAELSQGTYVEEKNNTFEEYAKEWLSEYQATGTVKISTVRIRKKGIKLLLP 113

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSV 161
                    IT K  +  +        S    +++    R++F+ A+  + +  +P  S 
Sbjct: 114 YLAKLRISIITAKQYQHALLDLHDKGYSNNTIVSAHQTGRMIFQRAIELKIIKNDPTSSA 173

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSC 210
             PKR+       T++++ ++                   +    F  L Y+G+R  + C
Sbjct: 174 VIPKRQRTIEDLETEKEIPKYMEKEELALFLQTAKEKGLDRDYAIFLTLAYTGMRVGELC 233

Query: 211 RAGVQHLQN-------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                 +                     N   +  +   +   + +    +  L      
Sbjct: 234 ALKWSDIDFSEQTVSITKTYYNPNNNIKNYTLLTPKTKSSKRVIIVDKKVLDELEQLQAE 293

Query: 252 KETFFINNDK------------------QKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
           ++   +   K                          ++        AG+    + H +R 
Sbjct: 294 QKRIKMFFRKTYHDKNFVFSQQGEENAGFPTYPKLVALRMTRLLKLAGLNTKLTPHSLRH 353

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
              ++ A+A  +  ++M   G ++ +  +  Y       +   + S++ + ++ S
Sbjct: 354 THTSLLAEARVSLEQIMQRLGHRSDETTKNIYLHVTKPKK--KEASQKFAELMSS 406


>gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 119/375 (31%), Gaps = 48/375 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G+   Y R   G++                +AL     ++E           LK  + 
Sbjct: 16  KDGRFAGYIRLEGGKKKYFYGNTRKEVQDKVRAALN----EKERGTLATGPNPLLKDYLP 71

Query: 77  EYRKSA-HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           E+ ++       A  + IS+ S     +I + G    R +T +HI++    +      P+
Sbjct: 72  EWLETVCKPPYRAPQTYISYRSVISKHLIPEIGHLKIRNLTARHIQNLYTKKIREGAKPA 131

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  Q    +      A++ E V+ N    +   K +   I P T+E+ +        G +
Sbjct: 132 TIEQMQKVLSGSLNSALQWEMVSTNVASKITTLKGEQREILPLTEEEAKVLLETA-RGHR 190

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIIT 234
                   +  GLR  +      +++                   +      +   +   
Sbjct: 191 LEGMILLGVTLGLRLGEITALKWKNIDLDAHTLTVKLTVSHVPSMSHVEKDPKTRASRRK 250

Query: 235 VELPDGFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
           ++LP+  ++ L                       K   F+N  +  M A Q    F A  
Sbjct: 251 IDLPNAVVQTLRQHYDEQKAEAEKMGLSLSEWNPKGLVFLNKRRGYMYAGQTRKEFYAIL 310

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKN 335
            +AG+ K   H +R  +ATI    G     +    G  ++      Y+     +R  +  
Sbjct: 311 AQAGLPKMHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMTMNIYSHVMPSMRKEVAG 370

Query: 336 SRR--ISSVVDSDDP 348
                 S   + D P
Sbjct: 371 IMDTIFSEKKEEDKP 385


>gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 327

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 79/262 (30%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  +   + +    ++   G    R I T  +R       E  + +
Sbjct: 52  LVELFLSAKRIEGCSEKTLKYYNATIQAMLTCVG-KGVRHIVTDDVRSYLTEYQEKNQSS 110

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K  T     +T E ++  +   +E 
Sbjct: 111 KVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTDEALELMRDSCTE- 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +        +  N               V         L   
Sbjct: 170 LRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDARTKIHLQNY 229

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              +               +++  +   +  +    + G+     H  R+  AT++ D G
Sbjct: 230 LNSRRDENPALFVSLQKPHKRLQISGIEVRLREYGKRLGLSKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 290 MPIEQLQQLLGHRRIDTTLQYA 311


>gi|284993087|ref|YP_003411641.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284066332|gb|ADB77270.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 404

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 40/344 (11%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+R  +      T   A   AL     +         +  T+   ++ + +    G    
Sbjct: 6   GKRSTMRRGGFPTKAAA-NRALADVANRTAQGVRVDDRE-TVASFLARWLQ-VKAGEAKP 62

Query: 90  NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKW 146
            +  S+ ++ ++ I+   G     ++  +H+       +    P +  +   ++R    +
Sbjct: 63  TTVRSYRAHVERVIVPAIGHVPIEELRAEHVEQLLVDAANGRGPVTVRRIHATLRSALSY 122

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            V+   +  N   +V  P      ++PW+  ++  F     E  +    FE +   GLR 
Sbjct: 123 GVKTRRLPFNVASNVTPPNGIRPEVQPWSAAELAAFL-RHVETDRLGPLFEVIAACGLRR 181

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------------------- 244
            ++       L     + + ++T   +   L     K                       
Sbjct: 182 GEALGLRWSDLDLANRTARIRQTIVDVGGRLQFSTPKTRSSEATVPLTERAVQALLQVRL 241

Query: 245 --------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                           +  F   +   +     +  F A    AG+     H +R  +A+
Sbjct: 242 GQDLDRQGWGGAYHAHDLVFARENGAPLRPEYATRRFVALTKAAGLRWVRLHDLRHGAAS 301

Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIKNSR 337
           +   AG     +       ++    +TY     D +R       
Sbjct: 302 LMLAAGVPMAIVSKVLRHSSIGITVDTYGHLSEDTVRTASDAMA 345


>gi|227485414|ref|ZP_03915730.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236544|gb|EEI86559.1| integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 380

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 111/368 (30%), Gaps = 45/368 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    ++P F    R   G   ++    +    G ++        T   A          
Sbjct: 1   MQRRFKVPAF----RDESGNKTWFCKFNYTNWKGEKLTKKKRGFLTKKEALKWEQEFLNQ 56

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
             E I        + +     Y++      +  N+  + E+  +Q I+   GD    +I 
Sbjct: 57  HSESI------EMSFREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEIN 109

Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              I                K++P+        +  +   A R   +  N    V     
Sbjct: 110 NVTIIQWQNELMKIKDKNGKKYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGE 169

Query: 167 KT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           K  + +  WT+++ ++F     +  +   AFE L + GLR  +      +       ++K
Sbjct: 170 KEADEMLFWTQDEYERFIEAIKDKPESFYAFELLYWCGLRMGELLALTKEKFDFERHTLK 229

Query: 226 TQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             ++                    T+ +P+     +             +     + +  
Sbjct: 230 IDESLQRIDGKNVITAPKTKKSIRTIVMPEFLTDEIKEYIESFYKLKPKDLIFNFSKSYL 289

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--A 326
                  + K+ V +   H +R    ++  + G +A  +    G +++D    Y     +
Sbjct: 290 HHEMDRGSKKSQVKRIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPS 349

Query: 327 DRIRLGIK 334
            +  + + 
Sbjct: 350 KQKEMALS 357


>gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 322

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 87/274 (31%), Gaps = 14/274 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P+K+  + K  ++++ ++      +  +   +    +Q+++K      R+ITT+ +R 
Sbjct: 35  REPQKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLKKV-VRPVRRITTEEMRE 93

Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVDYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           D+++         +     + L  +G+R  +  R     +  +               V 
Sbjct: 154 DIEK-LRDGCSCLRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289
                   L      +                        I  +    K  +++   H  
Sbjct: 213 FDAKSKVHLINYLRSRNDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R+  AT + D G    ++    G   +D    Y 
Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
 gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2]
          Length = 258

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 11/232 (4%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +I+  GD     ITT+ I+  +         SS    +  ++ LFKWA  ++YV+INP  
Sbjct: 13  LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           S++ PK ++   +  T+E+++  +    + +  +  FEF+  +G R  +        +  
Sbjct: 73  SIKEPKPESRIPKFLTEEEIELLREAC-KTTFEKALFEFMYSTGYRIGEVVNLDKHSINM 131

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWF 273
                I   K      V +       L      +               +M+  Q     
Sbjct: 132 AEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYVI 191

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           K  + +AG+NK    H +R   AT   + GA    +    G +  +    Y 
Sbjct: 192 KQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243


>gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L]
 gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L]
          Length = 343

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 101/349 (28%), Gaps = 34/349 (9%)

Query: 16  TRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + GK     YY        I+     ++            +        S   K  TLK
Sbjct: 7   KKTGKWRTLIYYKDYRGEPHIKQKRGFKTQ---------REAKEFERDFLSKFTKDITLK 57

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
               EY        L  ++  +   Y   +       +   I+ K I    +       +
Sbjct: 58  QAKEEYFDYISTR-LRESTVRNKRWYAKNL-EYIEHINLLNISPKTILDWQKHMQDIGKS 115

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q    +  +FK   +      NP  ++E+   + + +  WT ++   F   + E 
Sbjct: 116 NKTINQSTEVLYGIFKHNCKMYSNTHNPVKAIEKLPTEKKEMDYWTLDEFNTFLG-FVED 174

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +  LAF+ L Y G+R  +     +  + +    I                   +  +  
Sbjct: 175 PEKSLAFKILFYGGIRYGELLGLQIGDIYDTYIDINKSYDYRSKKFCPTKNKQSVRQVVM 234

Query: 250 IGKETFFINND-------------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
             K    I                  K   T  S   K    K  ++K   H +R   AT
Sbjct: 235 PDKIMDDIRAYISTLYKPGKKDRLFSKTTNTWLSRQLKVTCEKYNLHKIRVHDLRHSHAT 294

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSV 342
           +  + G     +    G         TY+    +R    +    +++++
Sbjct: 295 LLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVDLLNKLANL 343


>gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048]
 gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048]
          Length = 308

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 100/286 (34%), Gaps = 15/286 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       +      KK  + +    ++ K  +  +L   +   +++ F    +K  +  
Sbjct: 1   MKRRGELTDEELKIIKKKISDEEAYEKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQ 59

Query: 111 YRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +   K +   +    +    ++    L ++R  + +  + + +  NP  +++  + + 
Sbjct: 60  LVEWEQKDVEDLILKSKQLMKVTTINTRLRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQ 119

Query: 169 EGIRPWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           + I     +          K     G +  +     L +G+R S+     V+ +++N   
Sbjct: 120 KTIETLDNQEIEKLIKTIRKQKTFVGFRDEVILLVFLDTGVRLSELIGINVEDVRHNKLI 179

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKAT 278
           I++ K     TV L D   + L      +        FI+ + ++++             
Sbjct: 180 IRSTKNLFERTVYLSDTTQERLESYIKVRGEVATNKLFISQNNKELHPHSIQTRLTKYGK 239

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A ++K  S H  R   A     +G  A  LM   G   +   + Y
Sbjct: 240 EAKISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRY 285


>gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
 gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5]
          Length = 316

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 38/293 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKH 128
           I  +            N+  ++ S  + +         D+ +  T+ +R  +   + R  
Sbjct: 10  IELFLDMLAAEQGAGDNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGF 69

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             SS  + L+S R LF++ + +   + +P   +  PKR     +  +  D+ +      E
Sbjct: 70  KSSSVARRLSSTRHLFRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRLLGKARE 129

Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
                          +     E L  +GLR S+     +   + +   I  +        
Sbjct: 130 FADQEQAPLQKLRAMRLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGKGDKERL 189

Query: 235 VELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           V L     + +                  P  K  F  + +   +    F+   K  A  
Sbjct: 190 VPLNQSSREAMTAYLAATEAAKTDKTKSEPRSKWLFPSSGESGHLTRQHFARDLKELAMA 249

Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A ++    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 250 AAISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 302


>gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581]
 gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae]
          Length = 326

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++  +  S      +  +   + S  D +++   +    +I T  +R+ + + ++  +
Sbjct: 49  EKIVELFIGSKTLEGCSDKTIKYYISTIDSMVKSI-NKQINEIETNDLRNYLSNYQYKNN 107

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +       +   F W   + Y+  +P   +++ K        ++ E+++  +   +
Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDENYIVKSPVRRIKKVKAPITVKETYSDEELEIMRDNVN 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
              +     + L  +G+R  +  +  ++ +  N    I   K      V         L 
Sbjct: 168 -NYRDLALIDILASTGMRVGELVKLNIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLK 226

Query: 247 MTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +     +          +++        +       + K   H  R+  ATI+ D
Sbjct: 227 KYLDSRVDKNKSLFVSLKLPYGRISINGIESRLRKIGKDLNIKKVHPHKFRRTLATIAID 286

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G + VD    Y 
Sbjct: 287 KGMPIEQVQRLLGHEKVDTTLKYA 310


>gi|20065985|ref|NP_612851.1| putative integrase [Clostridium phage phi3626]
 gi|168211657|ref|ZP_02637282.1| phage integrase [Clostridium perfringens B str. ATCC 3626]
 gi|19908316|gb|AAL96792.1| putative integrase [Clostridium phage phi3626]
 gi|170710375|gb|EDT22557.1| phage integrase [Clostridium perfringens B str. ATCC 3626]
          Length = 349

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 101/358 (28%), Gaps = 38/358 (10%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            K + R G     F                               +   +          
Sbjct: 4   YKNKER-GTYYCSFYYKDWT----GKRKRKKKEGFKTKKEADKFEREFLVKVQENSDIDF 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K L   Y + A    +   +  + +   + +I+    D     IT   IR    + K   
Sbjct: 59  KTLTEVYLEDAKIR-VRETTLENKKYLINLKILPYFKDKLISNITPNDIRQWQNTLK--- 114

Query: 131 SSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S    LT ++        +F + ++   +  NPC       +K      +   +  +  
Sbjct: 115 -SMNYSLTYLKTINNQLTAIFNFGIKFYGLNTNPCHRAGSMGKKNADDMKFWTTEQFKTF 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
             +++    +LAFE L ++G+R  +        +     +I   KT T            
Sbjct: 174 IEYNDKPISKLAFEVLFWTGMRSGELMALTFNDIDLKNKTININKTYTRLNGKDIINPPK 233

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                  V +P+     +         +  ++              K    K+ +     
Sbjct: 234 TPKSKRKVSIPNALCSYIETYITKLYDYNKSDRIFSFTKYFLVHEMKRVCKKSNIPIIRI 293

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           H +R   A++  + G T   +    G + V    +TY+         +    ++  ++
Sbjct: 294 HDLRHSHASLLIELGFTPLLISERLGHEKVQTTLDTYSHLYPNKDTMVS--NKLDELI 349


>gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 334

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 100/308 (32%), Gaps = 25/308 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +G+RIR     +      +   +  +  K+E++ +      TL  L+  +       
Sbjct: 18  RGRNGKRIR-RRFEKKQEAVLFERYVLANADKKEWLGASVD-RRTLSELLDTWWLLYGQ- 74

Query: 86  SLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
                ++ +    + + ++ IR  GD    ++  + I      R     + ++  + +  
Sbjct: 75  -----TQENGEIEKRHLNKTIRALGDPAVNRLNKRMIAQHRSQRLEDGISAATINRDIYR 129

Query: 140 MRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +  +F   ++ +E+   NPC  +E  K     +    K ++ +           R     
Sbjct: 130 LSGMFSTLIKLEEFRKENPCKGLEPLKEAPPAMTYLAKSEISKLLDT--LTGDDRRVALL 187

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
            L +G R  +      + + +   +    K G   TV + +   K +             
Sbjct: 188 CLSTGARWGEGSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEKEI--------KTSDT 239

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               K++   F    +         ++ H +R   A+     G     L    G  ++ Q
Sbjct: 240 GPLFKVDYENFCERLRQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQ 299

Query: 319 AETYTKGA 326
              Y   A
Sbjct: 300 TMVYAHLA 307


>gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 375

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 69  RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T  +   R     +   PS+  + + ++  +
Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 182

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K     +   +K +  Q     +E    RLA E LL +
Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 298

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +    A+     G     L    G   +     Y
Sbjct: 299 ---YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355

Query: 323 TKGA 326
              A
Sbjct: 356 AHLA 359


>gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 351

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
            +         L+ N+  ++ +        +   G  D R++TT  +R  +  E+R H  
Sbjct: 26  AFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 85

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           SS  + + S+R  F WA     +  +P   +  PK         T+   ++      +  
Sbjct: 86  SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 145

Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212
                                                 +     E L  +G+R ++    
Sbjct: 146 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 205

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258
            +  +  +  +I+          V   D   K LA          +              
Sbjct: 206 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 265

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                ++++           A ++GV   S H +R  +AT   D GA   E+    G  +
Sbjct: 266 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 325

Query: 316 VDQAETYTKGA 326
           +   + YT  +
Sbjct: 326 LRTTQRYTHVS 336


>gi|62362247|ref|YP_224172.1| gp34 [Enterobacteria phage ES18]
 gi|58339090|gb|AAW70505.1| gp34 [Enterobacteria phage ES18]
          Length = 387

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 103/375 (27%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F    G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDRLKAEAWRVSKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L +    +E+  ++    V+ P+ K
Sbjct: 121 MMEEACRKKGKQPPVFKPKPAAIATKATHLSFIKALLR-TAEREWKMLDKAPIVKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E  +     EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|71903947|ref|YP_280750.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.2]
 gi|94990870|ref|YP_598970.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.3]
 gi|71803042|gb|AAX72395.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.2]
 gi|94544378|gb|ABF34426.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.3]
          Length = 385

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 102/371 (27%), Gaps = 45/371 (12%)

Query: 11  VTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y  R         G+++R       T   A  + +      +      
Sbjct: 22  IEKYTKKDGTTAYRLRAYLGVDPVTGKQVRTTRQGFKTEREAKRAEVKLIDDFQRQGAWK 81

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIR 120
               TT   +   + +     ++  ++    +  +++         G     KIT    +
Sbjct: 82  SNDKTTFDDVAKLWFEQYQ-NTVKPSTFLVNQNYYKTILK---PHLGQLQMTKITVMICQ 137

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             V    +++  +   +L+    +FK+AV    +  NP     R K   + +   TK+  
Sbjct: 138 KFVNCLSRYSGYTL--YLSLANRIFKFAVNLGIIDNNPMNKTLRSKCTYKNVDTLTKKYY 195

Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
            + +           E  + RL +  L Y G R  +                        
Sbjct: 196 TKEELNTFLRLVEAEETLEMRLIYRLLSYGGFRIGELIALKDTDFDFRNNTISITKTIAY 255

Query: 220 ----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                       K          +             +    +       +         
Sbjct: 256 TKEGWAVQSPKTKKSNRTISMDAETMSLAKLYIKQSIKPLHGSFKLFNFASDTVRKRLDR 315

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
              K G+ + + HG R   A++  +AG  A       G   +      YT  +   +   
Sbjct: 316 FILKHGLKRITPHGFRHTHASLLFEAGIPAKIAQERLGHAKIAITMDLYTHLS--KKSKD 373

Query: 334 KNSRRISSVVD 344
             + +++ +V 
Sbjct: 374 NVADKLAELVA 384


>gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 304

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 29/285 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126
            T + L+  +       +L+  S   ++   ++ +            +T    R  V   
Sbjct: 1   MTNQELVKSFLMYQETKNLSERSIEWYQRTLNKFLEYCEENKISITSMTVPQARGYVHWL 60

Query: 127 KHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++  +             F+ S++V+F + +  EY+  NP   V++ K     I  +  +
Sbjct: 61  QNATAKTGKKYADNGINGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQ 120

Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGT 231
           ++++  + +        +  L    L   GLR S++    +  +      IK        
Sbjct: 121 EVKKMLNQFNKSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKE 180

Query: 232 IITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAK---ATKAGV 282
            I         ++L      ++              ++          +       KA +
Sbjct: 181 RIVPFGRSVKREILKYLAKREKAISKDLDEGYLFSTRQGTPLMIRNVIRKIQTVGKKANI 240

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                S H  R   A      G     L    G   +     Y  
Sbjct: 241 EGKRLSPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVH 285


>gi|304360798|ref|YP_003856919.1| gp41 [Mycobacterium phage Angelica]
 gi|302858382|gb|ADL71130.1| gp41 [Mycobacterium phage Angelica]
          Length = 362

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 87/335 (25%), Gaps = 31/335 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHES----TFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G            +       +      F             +         +  TL 
Sbjct: 10  KDGSTYTSVLYRLNGKQTSTSFDDPVQAVEFKRMVEQLGAAKALEVIETTDAAARHYTLS 69

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV---ESRKH 128
             +  Y        +  ++   +E      I    G      +T   I   V     R  
Sbjct: 70  EWLRHYLDHK--TGVEKSTIYDYEKVVAKDIDPALGPIPLAALTGDDIAKWVQALADRGL 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +       +      AVR   +  NP      P+ +   +   T+E   +     + 
Sbjct: 128 KGKTISNKHGFLSSALNAAVRAGRIPGNPAAGARLPRTEKAEMVFLTREQYAKLHDNITL 187

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------- 240
             QP +  EFL+ SG R  +        +  +  +++  +       +            
Sbjct: 188 PWQPLV--EFLVASGARWGEVVALRPSDVNRDASTVRISRASKRTYEKGSYALGAPKTLK 245

Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA--HGVR 290
                     +L       E  F N     +    F    ++    +AG++     H +R
Sbjct: 246 SRRTINVDASVLGKLDYSGEYLFTNTVGNPVRHNNFHANVWQPALKRAGLDVKPRVHDLR 305

Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
              A+    AG     +    G +++    +TY  
Sbjct: 306 HTCASWLIAAGVPLPAIRDHLGHESIKITVDTYGH 340


>gi|295105622|emb|CBL03166.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 358

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 98/349 (28%), Gaps = 42/349 (12%)

Query: 7   LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +P +   +  R G      Y+      ++ +L     +               +   +  
Sbjct: 1   MPAY---KDNRQGTWYASFYFENWQGVKQKKLKRGFATKKDALAW-------EREFLLQQ 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T +  +  Y        L  N+    E     +I+    +    +I  + + + 
Sbjct: 51  AADLTMTFEAFVEIYITDKK-KRLRENTWSVKEHIIRTKILPYFKEKRLSEIKPRDVIAW 109

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172
                         ++P+        +  +   AVR   +  N   +      +      
Sbjct: 110 QNEMLNYRDKNGKAYSPTYLKTLHGQLSAILNHAVRFYGLKSNAAATAGCMGSEKHKEML 169

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            WTKE+  +F     +  Q   AFE L + G+R  +           +   +   K+   
Sbjct: 170 FWTKEEYLKFAEVMMDKPQSYYAFEVLYWCGIREGELLALTPADFDLDKGLLSITKSYQR 229

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             +++P      +            +    ++  +         
Sbjct: 230 LKGRDVITDPKTPKSVRVIQMPQFLTDEIRDYLKSLYKVQPDQRIFEVTKSYLHHEMDRG 289

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A +AGV +   H +R    ++  + G +A  +    G ++VD    Y  
Sbjct: 290 AKEAGVKRIRIHDLRHSHVSLLIEMGFSALAIADRVGHESVDITYKYAH 338


>gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 88/300 (29%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS-GDF 109
           +T  +E     +    TL  L  ++ +         ++  +  ++    +++     G F
Sbjct: 96  ATAVKEAFQGSKDTRMTLFKLFDKHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSGRF 155

Query: 110 DYRKI-----TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +       + IR   E     +     +   +L  ++ + + A ++ Y        
Sbjct: 156 KVSDLAFCQLNEQFIREFQEFVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 215

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK+K    R  +KED ++ +     G +P     R  F F  Y+G    D       
Sbjct: 216 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 275

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIW 272
           +L  +       K             +KLL                     +        
Sbjct: 276 NLSRDDNGALWLKY--RRGKNGQLSRVKLLPEAVALIEKYRDETRATLFPVIPYQTLKWC 333

Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +   KA +      H  R   +T+   + G     +    G   +   + Y +   + 
Sbjct: 334 LTSIKIKADIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKK 393


>gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 308

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 87/271 (32%), Gaps = 16/271 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAI 134
           EY ++      + ++  +      Q+ +   +      +         +     +  S  
Sbjct: 25  EYLETLRSEGRSPHTLAACRRDLAQLAKLLPEHAEPLSRHDFAAALKKLSQSGASERSMA 84

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190
           + L+  R    + VR   +  NP   ++ PK      +    E       +     +  +
Sbjct: 85  RKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKAVDAEPLNALFDRAACDDALDA 144

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +    FE L  SGLR +++    V  +     +     K G    V L      +LA   
Sbjct: 145 RDLALFELLYGSGLRVAEAQALDVADVLIEEGWVGVRGKGGKHRQVPLTGQCATVLAAYL 204

Query: 250 IGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
             +         F N   +++   Q     +  A K G  +  S H +R   A+    +G
Sbjct: 205 PQRAAAAGETALFTNRLGRRLGIRQMQNRLRLWAVKNGSPQHISPHMLRHSYASHLLQSG 264

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A    +    G   +   + YTK  D  RL 
Sbjct: 265 AGIRAIQELLGHSDLAATQIYTK-LDFARLA 294


>gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
 gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176]
          Length = 359

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 87/305 (28%), Gaps = 42/305 (13%)

Query: 72  KWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRK----SG---------DFDYRKITTK 117
             +I  Y     +  L +  +   +        R      G         + D  KI +K
Sbjct: 21  DDVIE-YLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSK 79

Query: 118 HIRSGVESRKHT----PSSAI-------QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165
            I    +           SA        + L++++  F +   Q   +  +P  +V    
Sbjct: 80  DIAGIGKRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPTENVSLGA 139

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFS 223
            K    +  T+ +  +  +        R      L+   G+R ++     +   +++   
Sbjct: 140 PKKTLPKYLTESESLELLNNIQSDFYERDFCIITLFLNCGMRLAELVSIDLGDFRDDTIR 199

Query: 224 IKTQKTGTIITVELPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           I  +     +          L         L         F      +++ A +      
Sbjct: 200 ITGKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVEQIVA 259

Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-R 330
                AG+     S H +R  +AT+    G     L    G + V   + YT    +  R
Sbjct: 260 RCLQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLR 319

Query: 331 LGIKN 335
             ++ 
Sbjct: 320 EAVQA 324


>gi|57234334|ref|YP_181609.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57224782|gb|AAW39839.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 435

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 48/343 (13%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  R+               +  L  +     ++   +    +    +  + +      
Sbjct: 25  TGKRRQSWHTIKGTKKEADKKLRELLTAQDNGIFVKQSK---LSFGEWLENWCRDYVKIQ 81

Query: 87  LAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------SAIQFL- 137
               +  S+ ++    I    G     ++T + I++    +            SA   L 
Sbjct: 82  TTQRTFESYYQNIIGHIEPALGKVILTELTPQIIQAYYARQLEKGRADGKGGLSARSVLY 141

Query: 138 --TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +    K A +   +  NP  +VE P+ +   I    K+++ +    + E +   + 
Sbjct: 142 QHRIISKCLKQATKLGLIMRNPADAVEPPRPRKTAISVPDKDELPRLLDAF-ETTPYYVF 200

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQKTGTIITVELPD 239
           +  LLY G+R  ++     + +                    + IK  KT          
Sbjct: 201 YCLLLYCGMRRGEALALRWKDIDLKQDTIQIAETAFTLRSGEYVIKEPKTPHSRRCIDIP 260

Query: 240 GFMKLLAMTPIG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             MKLL +                    +  F   + + +N    +  F     KAG +K
Sbjct: 261 PTMKLLLLEYKADQTAYYAKLGVELGLHDFVFTRPNGEPLNPNTVTHTFLKAVRKAGFDK 320

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
              H +R   AT+   AG     +    G  +++   +TY+  
Sbjct: 321 LRLHDLRHLHATLMLQAGIHPKIVSERLGHASINITLDTYSHV 363


>gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 374

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 96/327 (29%), Gaps = 32/327 (9%)

Query: 23  YYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +  R    G R R            ++  +     + +Y++ PR     +  +   +  +
Sbjct: 13  WQARWRDPGGRQRKKNFTRKVDAQRWLDQMQAERHRGQYVD-PRAGKVRVSEVAEGW--A 69

Query: 82  AHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
                L V++   +       I+ + G +    +    +R  V     +     +  Q  
Sbjct: 70  RGLTHLKVSTATRYRGLMCGHILPRFGAWAVADLRHSDVRDWVNDLSASGLSAGTVRQAH 129

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             + ++   +V+   +A N    V+ P+      R    +++ +  +         L+  
Sbjct: 130 RVLSLILSESVKDGRIARNVAAGVQLPRAVRADPRFLDADEVARLIAGAGTNG---LSIA 186

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKET 254
            L + GLR  +     V+        +   ++ T      V       +   +      T
Sbjct: 187 VLAFCGLRFGELAALRVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLT 246

Query: 255 FFINNDKQKMNATQF----------------SIWFKAKATKAGV-NKSAHGVRKFSATIS 297
             I    +                          F      AG+   + H +R  +A+++
Sbjct: 247 PQIEALCRGKGPDDLLFTAPEGGALRLGNWRRRVFDPACRAAGLVGVTPHDLRHTAASLA 306

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYT 323
             +GA    +    G  +     + Y 
Sbjct: 307 IASGANVKAVQQMLGHASAAMTLDVYA 333


>gi|291287002|ref|YP_003503818.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884162|gb|ADD67862.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 410

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 28/290 (9%)

Query: 65  RKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           RK   T   +  E+++        G L   +  ++ +    I+     ++ + IT   + 
Sbjct: 80  RKSHKTFAEVAEEWKEHVERLHKAGELKRTTLRNYMNSLKSILDYFAIYEMQNITKSLVD 139

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                    P    S    LT +R +F +A    Y+  N    V+    +   I P+ + 
Sbjct: 140 DYKFELLDKPLSKKSINNKLTPLRRIFDYAYEMGYIEHNVMDRVKNFTLELPEIEPFNQL 199

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++Q   +   + +    A   +L+ +G+R  +      ++      S   ++  T     
Sbjct: 200 EVQAILNHLQKNNPKFHAMFTILFHTGMRIGEVLAMKWKNFDEMFCSYHVKEHFTEKRLD 259

Query: 233 --------ITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKAT 278
                     V L D  MK L                    D    +       ++    
Sbjct: 260 TPKTKASKRIVPLTDEAMKALRNHKQYTFMKSDFIFCNQYGDPWVSSDNIMKQVWEPMLK 319

Query: 279 KAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           K G+     +  R   A++S  AG     +    G K V      Y K  
Sbjct: 320 KLGIAYRIIYQCRHTHASLSILAGDNLAHIAERMGHKNVGTLITRYAKYV 369


>gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14]
 gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14]
          Length = 405

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 43/365 (11%)

Query: 11  VTKERTRHGKIIYYFRKGH-GRRIR-----LPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + ++    G    Y    H G+R R        P  S  I                    
Sbjct: 16  IREKVLSDGTSSLYLDIRHNGKRSREFLKLYLLPGSSRAIKEQNRQTMTKAETIRSERLI 75

Query: 65  RKKPTTLKWLISEYRKS------------AHWGSLAVNSRISFESYFDQIIRKSGD-FDY 111
             +  +   ++ +Y+ +              + + +  +  ++ S    +     +   +
Sbjct: 76  EIQKGSY-EVLQQYKTNTYFLPYYRKMCKERFRTDSQGTWGNWRSCLRYLEAYCDESTTF 134

Query: 112 RKITTKHIRSGVESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQE 151
            +IT + ++   +   +                    + +S   +   ++     A  + 
Sbjct: 135 SEITPEWVKGFKDFLDNVEKDSCKRKDREKVSVFNGLSLNSKHSYFNKLKACLNAAFEEH 194

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            + +NP   V+  K+        + E++ +  +        + AF F  ++GLR SD  R
Sbjct: 195 IIVVNPLRGVKGFKQDEVAREHLSWEEVVKLDATPCRYPVLKNAFLFSCFTGLRKSDIER 254

Query: 212 AGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                +Q      +   K       E  D   + +      +E       K  +N    S
Sbjct: 255 LTWGEVQKFDGFTRIVWKQKKTGGQEYLDIPEQAVKYLGTPQEEPDTPVFKGFLNGALLS 314

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +     A +NK  + H  R   A +  + GA  + +    G + +   + Y +  D 
Sbjct: 315 LELRRWMLAASINKDITYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARVLDE 374

Query: 329 IRLGI 333
            +   
Sbjct: 375 KKRAA 379


>gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50]
          Length = 356

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +         +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDKGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 409

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/404 (11%), Positives = 100/404 (24%), Gaps = 78/404 (19%)

Query: 1   MTPSLRLPPFVTKER----TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V  +      + G   Y F      +++  + +  T              
Sbjct: 1   MATKRKDKSRVVLKTGEVQRKDGT--YQFSWQD-SQMKRRFVYARTLDDLREKEKRIQKD 57

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKIT 115
           K         + TT+  L   +  +     L  N+  +++  ++       G      + 
Sbjct: 58  K-CDGIKTEARYTTIDELFDLW--ANMKRGLKNNTFENYKYMYNTFVRPVIGSKRISTLK 114

Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKR 166
              I+       + R   PS+     T +  + + AV  +++  NP  +      +    
Sbjct: 115 KSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIRNNPSDNVLRELKKAHCF 174

Query: 167 KTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
           ++E  R  TK + +    F             F  ++ +GLR  +        +      
Sbjct: 175 QSEKRRALTKHEQELFLNFMKTHPVYEHWYPVFAVMIGTGLRVGEVTGLRWCDIDMESGM 234

Query: 219 --------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------- 250
                                      T+   ++  V +     +               
Sbjct: 235 IDVNHTLVYYDHRTEGSKSGCYFNVNTTKTLASMRQVPMLGFVREAFEQEKQKQEDLGLH 294

Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGV 289
                    +  FIN   Q  +    +   +                      + S H +
Sbjct: 295 CEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFLHSDEPDVLLPHFSCHSL 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           R    T   +AG     +    G   +      Y      ++  
Sbjct: 355 RHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAA 398


>gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 96/318 (30%), Gaps = 35/318 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRK 105
           L            P   P +L  L+  + K     + +  +        +         +
Sbjct: 11  LLTVDDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WASE 68

Query: 106 SGDFDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            G     ++T   + S                +P +    L  ++V F+W  +Q  +  N
Sbjct: 69  RGIHHAAEVTRPVLESWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILAN 128

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCR 211
           P   +E P+++    R     +  +      +     G + R   E L  +G+R  +  R
Sbjct: 129 PAADLELPRQEKHLPRTILSVEQVEGIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVAR 188

Query: 212 AGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----- 264
                      I +I   K      + + +  +  L           + +   K      
Sbjct: 189 LETYSADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHKVRPEVLVSPDCKALFLAM 248

Query: 265 ------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                  A   +         AG+ K S H  R   AT   + GA    + A  G ++V+
Sbjct: 249 DGVAGLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVE 308

Query: 318 QAETYTKGADRIRLGIKN 335
             + YT+ + R    +  
Sbjct: 309 STQIYTQVSIRALQAVHA 326


>gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 410

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 114/378 (30%), Gaps = 58/378 (15%)

Query: 26  RKGHGRRIRLPY----PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRK 80
           R    + +R+                 + L     + E       +  TL   +  E+  
Sbjct: 26  RVKRTKTVRVEDQALIKTTKKLREFLETELHKFKIEVEAGEYIVPQKMTLDQFVQDEWIP 85

Query: 81  SAHWG--SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128
                  +L+  +  ++ S+FD  I    G      I T H+ + ++             
Sbjct: 86  KYASKTENLSPLTFRNYVSHFDTHISPSLGHKHLGDIKTLHVVTFIDDLGKPGARKDGKE 145

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  +       ++ + + A     + +NP + V++PK     I  + + + Q+  S 
Sbjct: 146 GRLSNGTIQYIYRVLKNILERAKEWGLIKVNPIIGVKKPKVGRPEIHFYDEVEAQEVISA 205

Query: 186 WSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------------IKTQ 227
             +  +  RL     +  G R  +        +  +  +                  + +
Sbjct: 206 LDKEPRTWRLFILGSMIGGFRRGELLALEWTDVDFDNMTLSINKSISLTVDGHAVEKEPK 265

Query: 228 KTGTIITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQFSI 271
              +I  V++P+ +M  L +                     +  F     + +  T  + 
Sbjct: 266 SKSSIRIVDMPEWYMDELKIHKHEWKKEKLFVGDKWRGGDKQYVFHAGFGKPLYHTYPTQ 325

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
           W+     +  + +   H +R  SAT+  +AGA+   +    G          Y       
Sbjct: 326 WWGEFIKRHNLKRVRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHIT--K 383

Query: 330 RLGIKNSRRISSVVDSDD 347
           ++  + + +       + 
Sbjct: 384 KVSRETAEKFDKFAPKNH 401


>gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/309 (9%), Positives = 82/309 (26%), Gaps = 58/309 (18%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK------- 127
           +Y K       A+N+ I++ +          D+   Y +++ K I    E          
Sbjct: 29  DYLKYQDQRDRAINTLIAYGNDLKAFWEFLSDYGYAYDEVSPKMIGEYKEYLMSEDDNII 88

Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170
                   T  +  + L+++   +++    + +     +                     
Sbjct: 89  AINKEGARTAKTINRMLSTLHGFYQYKADMQEIDNPLLMHEVNRPFNAFKGILEHARSDN 148

Query: 171 --------------IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                               +D  +      +  +  L ++ L  +G R  +     ++ 
Sbjct: 149 KTKQSIFKVKESNYKINLVSDDEMELFLSRLDKRRDILLYKMLYLTGARIQEVLDLEIES 208

Query: 217 LQNNI------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------ 264
           +             + +  G    + +P   ++ L      +      +           
Sbjct: 209 VPVPDMSQPVGCFQQIKSKGKTRDLYVPMSLIQELDDFIFEERNLIDTDHSYIFVSEQAR 268

Query: 265 ------NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                   +      K    + G++ + H +R    +    +G     +    G + +  
Sbjct: 269 QLGKQLTYSAAYDKLKKVQKEVGIDFNFHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLST 328

Query: 319 AETYTKGAD 327
            + YT  ++
Sbjct: 329 TQKYTHLSN 337


>gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010]
 gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010]
          Length = 334

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
            +         L+ N+  ++ +        +   G  D R++TT  +R  +  E+R H  
Sbjct: 9   AFLAYLRANRGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           SS  + + S+R  F WA     +  +P   +  PK         T+   ++      +  
Sbjct: 69  SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128

Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212
                                                 +     E L  +G+R ++    
Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258
            +  +  +  +I+          V   D   K LA          +              
Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                ++++           A ++GV   S H +R  +AT   D GA   E+    G  +
Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308

Query: 316 VDQAETYTKGA 326
           +   + YT  +
Sbjct: 309 LRTTQRYTHVS 319


>gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
 gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae BS455]
 gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein
           [Streptococcus pneumoniae BS397]
          Length = 321

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  +   ++   + +          ++TT  +R    +    +  +
Sbjct: 46  LLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLRSYLANYQSEKDCS 104

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++       +   F W  ++EY+  NP   +++ K +      +T E ++  +    E 
Sbjct: 105 KANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTDEHLEIMRD-NCEN 163

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  +     +                  V         L   
Sbjct: 164 LRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPVYFDARTKIHLRNY 223

Query: 249 PIGKETFFINNDK------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++              Q++      I  +    K  +     H  R+  AT + D G
Sbjct: 224 LNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLSIQKVHPHKFRRTLATKAIDKG 283

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 284 MPIEQVQKLLGHSKIDTTLAYA 305


>gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 381

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 101/379 (26%), Gaps = 40/379 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR-------LPY--PHESTFIPAYMSAL 51
              L+ P  V  ++   G   YY      G+R         LP   P       A  +A+
Sbjct: 7   PTRLKEPVKVRTKKLADGSESYYLDIYVDGKRSYEFLKLYLLPEINPMVKEQNRATKAAI 66

Query: 52  TGSTPKR---------EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                KR             +  +    L   +  Y                  +    +
Sbjct: 67  EAIKSKRIIELTHSKAGLKKTSVRSKMLLDDWMETYLAEQERKGARGG--KLLRTVCRLL 124

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY 152
                     +I  +     ++  +H          +P SA  ++         AVR E 
Sbjct: 125 PLYRKKVKMGEIDKEWCLGFIDWLQHTYKTRWGNPLSPKSAADYVGYFSTALNAAVRAEV 184

Query: 153 VAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +           ER K         T ++++            + A+ F  Y GLR SD 
Sbjct: 185 IPENPIMTLAPTERIKVPESKREYLTIDEIKALIDTECPREDVKRAYLFSCYCGLRLSDI 244

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-- 267
                + +  +    +        T  +     +        ++                
Sbjct: 245 YALRWKDIFLDGEQYRVSTVMQKTTTPIYLPLSRHAVRWLPERDGEGDELKIFAGLPAEP 304

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +      A  AG+ K  + H  R   AT+    GA  +      G   V   + Y K 
Sbjct: 305 NINKVLAKWAVAAGITKKITYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKI 364

Query: 326 ADRIRLGIKNSRRISSVVD 344
            D  +  ++    + SV D
Sbjct: 365 VDSKK--VEAVNLVDSVFD 381


>gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 385

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%)

Query: 11  VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K  T+ GK  +  +           ++ ++    ++       +A          +  
Sbjct: 4   IKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEE 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
            + KP   + +  E+  +    ++  ++       F+  I+   G      ITTK ++  
Sbjct: 64  EKPKPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKE 177
           V+   + T ++  ++   +  +  +AVRQ Y++ NP  ++  P        +    WTKE
Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAIVLPHHDDLAGDKPENFWTKE 182

Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219
            M  F +   + +     + F  L ++G+R  +        +                  
Sbjct: 183 QMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
            +      +      T+ +    M  L      ++  FI      M   Q          
Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFIQLGINTMQPNQLLFTNTKNGY 302

Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                 S          G+    + HG R    +    AG     +    G         
Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362

Query: 321 TYTK-GADRIRLGIKNSRR 338
            Y    A +         +
Sbjct: 363 VYAHVSAKQESEATAALAK 381


>gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104]
 gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 376

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 113/375 (30%), Gaps = 48/375 (12%)

Query: 14  ERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++  +GK  Y  R   +G+   +      T   A  +A          +     K   ++
Sbjct: 5   KQQPNGKWRYRIRYKENGKFREVSKSGFRTKRDAQAAANELERKLNSGLVVQHNKDILVQ 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--T 129
             +S + K      +  ++           I+ +   +   +I      + V       +
Sbjct: 65  EYLSSWIK-LKEKQVKKSTLAKLNRAIRLHILPQFAYYKITEIRRIDCINWVNEMCTHLS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERP----------KRKTEGIRPWTKED 178
             SA  + ++     + AV     +  NP  +++ P            +   ++      
Sbjct: 124 IESAKSYCSTFNSALEDAVNDFKLIDSNPMKNIKYPKTEKRKTAIQFFEKRELQNLLVTA 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSI 224
                +      Q  +    L  +GLR  ++     + +               N  F  
Sbjct: 184 ESYKGTKPFINYQYYVLTFLLARTGLRLGEALALKWEDVTEDKLTVSKTLYRENNQNFIT 243

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--------------QFS 270
             +   +  T+ L    ++LL    I K    + ++   +N                 + 
Sbjct: 244 TPKTISSYRTIILDKKCIELLKSFKIKKIEHSLKSNAFILNKEFVFTDSKGDFLKQCNYR 303

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            +F    T A V K S H +R   A    ++G+    +    G  T++     Y   +  
Sbjct: 304 TYFTTICTLADVPKLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVS-- 361

Query: 329 IRLGIKNSRRISSVV 343
            ++  ++  R  + +
Sbjct: 362 KKMETESISRYENFL 376


>gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 344

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 35/326 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +        +        ++ G  
Sbjct: 15  DEVYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +                  +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEETVNLCDLTTLQGMRDRALLELLWSTGIRRGEVARLETW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K S H  R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347
           YT+ + R    +  S   +   ++D+
Sbjct: 313 YTQVSIRALQAVHASTHPAEQTEADN 338


>gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           94_M4241A]
 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
 gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A]
          Length = 298

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 94/288 (32%), Gaps = 27/288 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
            ++ E+ +        +V++R ++      +     D       +T   +RS + +    
Sbjct: 3   AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  ++++    WAVR+  +A +P   ++ PK +        ++   +  +  
Sbjct: 63  GAARTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAMAAA 122

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G         + RL  E L  +G+R S+ C   V  +      ++   K     TV  
Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKS 285
                  L    +      +  +        A    +  +   T             +  
Sbjct: 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 290


>gi|294782725|ref|ZP_06748051.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|294481366|gb|EFG29141.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 323

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 90/264 (34%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           + L   +  +      +  + + + S  + +I K  +    +I T+ +R+ +   +    
Sbjct: 46  EQLKKLFIDAKRLEGCSDKTILYYVSTIETMITKI-NKSIVEIETEDLRTYLSDYQINNN 104

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   + Y+  +P   +++ K  +     +T E+++  +    
Sbjct: 105 SSKVTIDNIRRILSSFFSWLENENYIIKSPVRRIKKVKAPSIVKETYTDEELETMRD-NV 163

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           E  +  +  + L  +G+R  +  +  ++ +       I   K      V         L 
Sbjct: 164 EALRDLVLIDILASTGMRVGELVKLNIEDINFTERECIVLGKGNKERVVYFDARTKIHLK 223

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++               +++     +  +    K G+ K   H  R+  ATI+ D
Sbjct: 224 RYLENRKDNNKALLISLKAPCNRLSIAGVELRLRKIGEKLGIKKVHPHKFRRTLATIAID 283

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G + +D    Y 
Sbjct: 284 KGMPIEQVQKLLGHEKIDTTLQYA 307


>gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     + +     ++A  ++ S++     +           I    I + ++  +   
Sbjct: 46  FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 104

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186
            S     +    +  +F+ A   + V  NP   + +     T   +              
Sbjct: 105 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKV 164

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
               +  L+   LL +G+R  +      Q ++ +   I  ++                  
Sbjct: 165 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 224

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               I V L      +       +  +         N T F   F+    +AG  +  + 
Sbjct: 225 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 284

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H  R    +     G     + +  G    +  E Y    + IR   
Sbjct: 285 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 331


>gi|291534558|emb|CBL07670.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 404

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 107/343 (31%), Gaps = 24/343 (6%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  R  P+  +     GK I        +R+ L Y   +     Y++    S    E  N
Sbjct: 52  PGHRRKPYAARIT--SGKTITASGNIAPKRVYLGYFRTAKEAQEYLNRYAHSEDPTEKTN 109

Query: 63  SPRKK------------PTTLKWLISE---YRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              K               T   +  E   Y KS    + + ++  +  + ++ +     
Sbjct: 110 VSEKTLEYQKTNASVKYSPTFSNVYGETIEYLKSRK-RNYSDSTYKALNAAYNNLSS-LH 167

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            + +R I  + ++  +      + SS       ++ ++  A++Q+YV  +     +    
Sbjct: 168 SYKFRNIDYQLLQEAISKNDTLSKSSLNNIRNLLKKMYTLALKQKYVTDDISKLCDYDYT 227

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFS 223
                +       +      +  S  +     LLY+G+R  +      +++        +
Sbjct: 228 TVSDEKHHPFTHDEINLIRNTSPSPEKDMVLILLYTGIRAEEFLILENKNIHLDDQYFIT 287

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                 G    + + +  + ++      K+ +F + +  +         F     +  ++
Sbjct: 288 GVKTDAGKSRIIPIHNDILPIIQKYYNPKKHYFWDFNGSQRIYQTLRWRFDRLMKQLNID 347

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
              H  R  +AT   +A      +    G    D  +  Y   
Sbjct: 348 HIPHDTRHTTATAMHNANLDIMYIKLILGHHINDITQRVYIHS 390


>gi|187932470|ref|YP_001884285.1| DNA integration/recombination/invertion protein [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720623|gb|ACD21844.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 384

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 103/354 (29%), Gaps = 52/354 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
             +G++++       T   A +        K +   +        K  I+++       +
Sbjct: 20  YENGKQVKTRKQGFKTKKDAEIWVTDTLGKKHKGYIALTNSNILFKDYINKWFNEYKVLN 79

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMR 141
           +++N++  +    +  ++   G++   +++T  I+             P SA +    + 
Sbjct: 80  VSINTKNDYIYRINAHVVPMIGNYKLSELSTSIIQDFYNKLISEKGMKPVSAKKVYDIVN 139

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              K+A + + +   P    ++ K     I  WTK+++  F    +            + 
Sbjct: 140 GCLKYAKKSKLIYDLPTDIEKQ-KLVKPEIEFWTKKEIDFFLDKIN-DLYLYSPVFLDVL 197

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +GLR  + C      +      I+         +     F  +L  +   +         
Sbjct: 198 TGLRVGELCGLRWCDVNLESGYIEVNSQVIQDRINKELIFSSILKTSTSHRNISIPPVLI 257

Query: 262 Q------------------------KMNATQFSIWFKAKATKAG-----VNK-------- 284
                                      N    S+ F     K       + K        
Sbjct: 258 DFLKAMKEDNNALENDFVILSREGLMCNPRNLSMNFTKTVAKYKKSIDDIEKENKEVPKD 317

Query: 285 -------SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                  S HG+R   AT+    G     +    G + +     TYT   D ++
Sbjct: 318 YMQLKQISFHGLRHTHATLLIFNGENIKVVSDRLGHRDISITLNTYTHIMDDMK 371


>gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 291

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 14/264 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           + +E+ K     SL+ N   + ++     +       +  +          ++  + ++ 
Sbjct: 16  IFNEFFKYIQHKSLSYN--KNLKNIILNFMEFIKKDSFMNVEVSDAIFYYNNKSCSKNTK 73

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           + +LT + V F + V   Y+A NP     +  + ++  R +  E  Q+      +  + R
Sbjct: 74  LSYLTYLNVFFDFCVDNNYIAKNPISKYRKSMKPSKKERVYLTEKHQELVFSRLKDFEFR 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             + FL+ +GLR  +        +   + I  +K  K      V + D     L      
Sbjct: 134 FMYVFLVQTGLRRGEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDELYMYLKRWNYE 193

Query: 252 KETFFINNDKQKMNAT----------QFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           +   +  +D   ++             FS +         +  + H +R   AT   +  
Sbjct: 194 RALRYPVDDSYFVSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCINKK 253

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
                L    G + +     Y   
Sbjct: 254 MDLKTLSLILGHEDIATTSIYLHK 277


>gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 377

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 115/368 (31%), Gaps = 44/368 (11%)

Query: 15  RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  +G+      +R   G   R      +       + L     + E     +    T+ 
Sbjct: 13  KRANGRWYSALTYRDDFGEVKRREVSGRTQ--AEVRAKLRELRERVEAGAPVKDASITMA 70

Query: 73  WLISEYR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
             + ++  K+         +   + +     ++ K G     ++   ++ + V +++   
Sbjct: 71  AWLEDWTTKALPASDRKQATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALVLAKRRAG 130

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS       +R     AVR   +  NP   V+RP  + +     + +  +       
Sbjct: 131 LSASSVRTIYAVLRAALDVAVRDGLIQRNPAALVKRPAVERKDAGYLSAQQAEALLEAV- 189

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGT 231
            G +    +  +L +GLR  ++     + +  +   ++                 +   +
Sbjct: 190 RGDRLEALYRVMLATGLRRGEALALHWRDVDLDAAVVRVRWTLSRTSAGLELGEPKTEKS 249

Query: 232 IITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
             TV LP   ++ L                        F +     +        F+A A
Sbjct: 250 RRTVPLPVPAVETLRAHRKRQAAEQLAAGSLWQASGLVFTSEIGTPLEPRNVLRRFEALA 309

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
            +AG+     H +R  +A+    AG     +    G  +    A+ Y+  A   +   + 
Sbjct: 310 ERAGLRGVHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQR--EA 367

Query: 336 SRRISSVV 343
           + ++   +
Sbjct: 368 ADKLGQAI 375


>gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 342

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 97/322 (30%), Gaps = 13/322 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKW 73
            ++G    ++R    +  R  Y                    ++             L  
Sbjct: 6   KKNGTWFVHYRVSGEKNPRQEYFGVGDEAKKKAQIRDAEIKLQKASGQRPVPSNGEYLDT 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK--HTP 130
           +   Y         +           ++  + +        I    + + V+ +      
Sbjct: 66  VAQAYVTDRKLAGASAKWLAEISWLLNKFVLPELTKAPIDDIRYPDVIAFVDRQWGDRAL 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  ++L  ++ +F++AV   Y   NP    ++ +     +R  T ED+ +     +   
Sbjct: 126 ATRQRYLGYLKAIFRFAVEHGYAKNNPLAKWKKVREPKRDMR-LTVEDLGKIMRHAAPHL 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAM 247
           +  +  E+ L +    ++  R     +      +    T+       + +   F   LA 
Sbjct: 185 RWAIEVEWELGTRPGPTELFRIRWDDVDFAQCIVHVRGTKTHEANRVIPILPEFRDRLAA 244

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
           T       ++ + K +      +   +  A +AG+      + +R   A++    G+   
Sbjct: 245 TKAAMGGEYVVSYKGEPVKR-LNKALQRAAERAGIGYPVRMYDIRHLYASVMLANGSDLA 303

Query: 306 ELMATYGWKTVDQAE-TYTKGA 326
            +    G  T+   +  Y    
Sbjct: 304 AVSKILGHSTIATTQEHYYHVL 325


>gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 310

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 80/268 (29%), Gaps = 14/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  + ++         +  +   +E +     +   +  + +   K       S+   P
Sbjct: 11  WQEALQQFLFFKRAVGRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLLEYLSQPVKP 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           ++    LT ++  FKW V +  +  NP   + + K +   +   T+   +          
Sbjct: 71  ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236
            G +        L +G+R  ++    ++H       +                   +T  
Sbjct: 131 CGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVSRVLPILPVTAN 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                + +       K   F     + +    +    +  + K GV    + +R   A +
Sbjct: 191 AVKKLIAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLGVKIRPYDLRHTFALL 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L  T G  T++  + Y  
Sbjct: 251 YLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614]
 gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614]
          Length = 287

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 84/263 (31%), Gaps = 17/263 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           L     +     +L+  ++ S+     +  R  G     ++  + +R+       T  S 
Sbjct: 8   LRRRMIEDMTVRNLSPATQRSYLHAVSKFSRYFGRSP-DRLGLEDVRAFQVHLVATGISW 66

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               Q + ++R  +   + Q  +           +   +     + +++ +F        
Sbjct: 67  PALNQTVCALRFFYGVTLGQAEIPERIA----YARAPRKLPEVLSADEVVRFLEAV-PSL 121

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248
           + R A      +GLR S+     V  + +      I+  K G    V L    + +L   
Sbjct: 122 KTRTALTAAYAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTY 181

Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                       ++     ++ T      ++    AG++K  + H +R   AT   + G 
Sbjct: 182 WRLARPPDWLFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGT 241

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               +    G   +     YTK 
Sbjct: 242 DIRIIQVLLGHNNLSSTARYTKV 264


>gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 368

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 108/364 (29%), Gaps = 44/364 (12%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
            R    + K +    +     + G  R      Y      +  Y         KR     
Sbjct: 2   PRRGENIYKRKDGRWEGRCLKQDGKYRYFYARTYKGVKEKMKNYKETRESGKEKRYGGAK 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
                  +  L   + + A    +  ++  S+       +I        +K+T + +   
Sbjct: 62  D------VCSLFESWLEDASLR-VKPSTYESYYRCMDKYVIPFFKQDKSQKLTEESVLCF 114

Query: 123 VESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           V++ +  P    SS  + LT  ++  K  ++      +    V+ PK   + +  ++ ++
Sbjct: 115 VKAMREQPGLADSSRKKNLTIFKIALKEILKGTPEGFSIIEQVKIPKPDDKEVMVFSLKE 174

Query: 179 MQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  +         R A      Y+G+R  + C      +     ++   +T + I    
Sbjct: 175 QRLIEQTALHSKDKRAAGIILCFYTGIRLGELCSLKWGDIDMEAGTLSIGRTVSRIKDFE 234

Query: 238 PDGFMKLL---------------------------AMTPIGKETFFINNDKQKMNATQFS 270
                  L                             +    + +  +     ++   F 
Sbjct: 235 EGKSKTALLVGAPKSRKSLRKIPLPEFLLKLFKECGFSHANPDHYIFSQGDSPIDPRCFQ 294

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-D 327
             +K    +A V ++  H +R   AT + + G     +    G  +V      Y+    +
Sbjct: 295 KLYKKLLKEAHVQDRKFHAIRHTFATRALEMGVDVKTISELLGHSSVSITLNVYSHSLME 354

Query: 328 RIRL 331
           + +L
Sbjct: 355 QKKL 358


>gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180]
          Length = 358

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 11  RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 67

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 68  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 127

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 128 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 187

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 188 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 247

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 248 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPP 307

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 308 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 351


>gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
 gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353]
          Length = 354

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 97/335 (28%), Gaps = 36/335 (10%)

Query: 11  VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K++  HG     FR     G  R+              Y +    S      +     
Sbjct: 3   VYKDK-AHGTWYTSFRYIDWTGKKRQKMKRGFKTKREALNYENEFKNSVAVEPDMQM--- 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV-- 123
                   +  Y  S     L  NS  + +      II   G+    +IT   I      
Sbjct: 59  -----DKFVDIYF-SDKKNELKANSIRNKQHMINKHIIPYFGNKKLNEITPADIIQWQKI 112

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181
            +  K + +        +  LF  A R   +  NPC  V+R  K   + +  W KE+  +
Sbjct: 113 IQENKFSKTYERMIQNQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDR 172

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIK 225
           F S     S+  L FE L ++G+R  +                        +        
Sbjct: 173 FISGVDRKSEDYLMFEILFWTGIREGELLSLTIADFDMTNNLLHINKTYHRIDGKDVIST 232

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
            +   ++ T+ +P+   + +         F  N     + A       K    K GV   
Sbjct: 233 PKTDNSVRTIIIPNFLKEEVQEYISYHYGFPENERLFPIVARTLQKRMKRYEKKTGVKPI 292

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             H +R        + G     +    G K +   
Sbjct: 293 RVHDLRHSHVAYLINQGVEPLIIKERLGHKNIQIT 327


>gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium]
 gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  + V+     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYVKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase
 gi|215353|gb|AAA67900.1| integrase [Phage 434]
          Length = 356

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
 gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           115-1]
          Length = 356

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 314

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 14/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  + ++         +  +   ++ +         +    +   K       S+   P
Sbjct: 11  WQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFNDEQQLKKCLYEYLSQPIKP 70

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           ++    LT ++  FKW V +  +  NP   + + K +   +   T+   +          
Sbjct: 71  ATYNLRLTYLKAFFKWCVEENILKSNPLEGLPKKKAEGRIVNIDTEILEKLLKLPDKNTF 130

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE 236
            G +        L +G+R  ++    ++H       +                   +T  
Sbjct: 131 CGLRDYALILLALDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVSRVLPILPVTAN 190

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                +         K   F     + + +  +    +  + K GV    + +R   A +
Sbjct: 191 AVKKLIAARHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIRPYDLRHTFALL 250

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L  T G  T++  + Y  
Sbjct: 251 YLKNGGYELSLQKTLGHTTLEMTKRYVH 278


>gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 361

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 130/343 (37%), Gaps = 24/343 (6%)

Query: 9   PFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPR 65
           P +  E+       Y  R      +   +P   +       Y +A  G         +  
Sbjct: 6   PGLWAEKLPSASTRYRVRAEGRKTKVTVIPVATDHPDVWDHYRAARAGEKWTGPATKT-T 64

Query: 66  KKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKI 114
               +++WL+ +Y          G  +  +    +S   ++           G++D +  
Sbjct: 65  AVAHSIEWLVEKYLAHLARVVEAGQASPLTLRQRKSQLRRMCAMPTDDGGTYGEYDMQA- 123

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRP 173
               I +  +  +H P+ A   + S+  +++WA+ +  +A  NP   + +  R   G  P
Sbjct: 124 PRSAIIAARDQWRHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAAP 183

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQK 228
            T ED+++F++    G+   L     +++  R  D+ + G  +         I     +K
Sbjct: 184 RTAEDLKKFRAKHPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGKK 243

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSA 286
               ++V L    +K      +   T+ + +  +    A       +     AG+  KS+
Sbjct: 244 GSAPVSVPLLPQLLKATRAQKVQGATYLLTDYGRPFSTAESLRNRVRKWCAAAGIEGKSS 303

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           HG+RK    + A+AG T H++MA         +E YTKG +R 
Sbjct: 304 HGIRKAMGELLAEAGCTQHQIMAIMAHTKAKTSEIYTKGVERR 346


>gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli]
          Length = 337

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------------TQKTG 230
           RL  + L  +G+R S+  +  V+ L  +  +I                        +   
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREHVS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|256024112|ref|ZP_05437977.1| putative phage integrase [Escherichia sp. 4_1_40B]
          Length = 387

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHHWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 338

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 101/331 (30%), Gaps = 29/331 (8%)

Query: 11  VTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T ++   G+     +    +G+R+R           A+   L   + ++ ++   + K 
Sbjct: 1   MTIKKQADGRWLVQCFPNGRNGKRVR-KLFTTKGEAIAFERYLLEESQEKPWLGEKQDKR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             L  L+  +        + +      +S         GD    +   K      E R  
Sbjct: 60  K-LTELVETWF---RAHGITLGDGKKRKSSMLFACEAMGDPLAIEFNAKIFSIYREKRLS 115

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWT 175
                       TP +    L   R +F   +R  E+   +P   V   K   + +   +
Sbjct: 116 GEIVRTDRLKTVTPRTVNLELAYFRAMFNELIRLDEWTKEHPLAKVRSYKTDEQEMGFLS 175

Query: 176 KEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            ++++   S   + +   L       L +G R S++       ++NN  +    K     
Sbjct: 176 DDEIRLLLSECEKSTSKDLIHVVKICLATGARWSEAENLTATQIRNNTITYVRTKGKRNR 235

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           ++ + D     L         F           + F    +    +    +S+H +R   
Sbjct: 236 SIPISDELANELPKGQGNNRLFKSC-------YSAFRSALERTGIELPKQQSSHVLRHTF 288

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +G     L    G   +     Y+ 
Sbjct: 289 ASHFMMSGGNILVLQRILGHTDIKMTMRYSH 319


>gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
 gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855]
          Length = 407

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 89/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRLKKDRTVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q  +    
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLAACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LYSGLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPNVRRAFIFCLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|9507567|ref|NP_052898.1| integrase [Plasmid R100]
 gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46]
 gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium]
 gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata]
 gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium]
 gi|58000325|ref|YP_190211.1| integrase [Escherichia coli]
 gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli]
 gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa]
 gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520]
 gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae]
 gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila]
 gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171]
 gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae]
 gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae]
 gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae]
 gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae]
 gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae]
 gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli]
 gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-]
 gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1]
 gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1]
 gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1]
 gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1]
 gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1]
 gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli]
 gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
 gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein
 gi|2120150|pir||I39499 integrase - Acinetobacter baumannii
 gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae]
 gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa]
 gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa]
 gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa]
 gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli]
 gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa]
 gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46]
 gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa]
 gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii]
 gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79]
 gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli]
 gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100]
 gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli]
 gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46]
 gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium]
 gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida]
 gi|30349168|gb|AAP20904.1| integrase [Escherichia coli]
 gi|30349183|gb|AAP20918.1| integrase [Escherichia coli]
 gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli]
 gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium]
 gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa]
 gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida]
 gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae]
 gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae]
 gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae]
 gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica]
 gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis
           str. SC-B67]
 gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a]
 gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa]
 gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa]
 gi|47716827|gb|AAT37602.1| integrase [Escherichia coli]
 gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae]
 gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa]
 gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium]
 gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae]
 gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa]
 gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae]
 gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa]
 gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8]
 gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae]
 gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli]
 gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans]
 gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa]
 gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli]
 gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica]
 gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila]
 gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar]
 gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8]
 gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11]
 gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5]
 gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium]
 gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae]
 gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae]
 gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5]
 gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa]
 gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa]
 gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae]
 gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa]
 gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa]
 gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin]
 gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae]
 gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6]
 gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5]
 gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae]
 gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli]
 gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa]
 gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae]
 gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae]
 gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli]
 gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm]
 gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa]
 gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171]
 gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1]
 gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa]
 gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport]
 gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa]
 gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes]
 gi|225730210|gb|ACO24921.1| integrase [Escherichia coli]
 gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae]
 gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae]
 gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae]
 gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae]
 gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri]
 gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli]
 gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa]
 gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa]
 gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae]
 gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli]
 gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae]
 gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa]
 gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa]
 gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa]
 gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca]
 gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017]
 gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-]
 gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042]
 gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes]
 gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans]
 gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni]
 gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli]
 gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli]
 gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida]
 gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana]
 gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3]
 gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105]
 gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae]
 gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1]
 gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1]
 gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1]
 gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1]
 gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1]
 gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli]
 gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016]
 gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae]
 gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1]
 gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10]
 gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium]
 gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli]
 gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli]
 gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489]
 gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3]
 gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253]
 gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens]
 gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227]
 gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3]
 gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299]
          Length = 337

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97]
 gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97]
          Length = 319

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 44/307 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------------DFDYRKITTKHIR 120
            +  Y +      L+ N+ I ++   +  IR                D     IT  H+ 
Sbjct: 3   YLKMYVEHLQQKDLSHNTVIMYKKSINYFIRWFEETHANYESYYTTFDKAVGDITLDHLI 62

Query: 121 SGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              E    T S         +    +  ++  F +   +  +  NP  + +  +   E  
Sbjct: 63  KYREYLFETKSVTGKPYSLETIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQ 122

Query: 172 RPWTKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             W   D +     +             G +       +L +GLR S+     ++ L N 
Sbjct: 123 VRWLTHDEKNRLLRYVEDPKLIIKNEWRGYRNLAIINIMLLAGLRASEVSNLKLEDLDNG 182

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSI 271
              I++ K      + +     K+L                +  F++    K      + 
Sbjct: 183 FILIRSSKGLKGRKLPINHDLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTK 242

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F     K G+   S H +R        + G   H +    G  +V     Y   ++   
Sbjct: 243 LFITLEKKTGIEGLSPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTSSNMEK 302

Query: 330 RLGIKNS 336
           +  ++  
Sbjct: 303 KTAVEKL 309


>gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
 gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741]
          Length = 322

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           +  + ++  +      +  +   +    D  + +    + +++TT+ +R       + R 
Sbjct: 45  EEYLQDFLAAKRVEGCSDRTEKYYRMTLDTFMNEI-QKNIQQVTTEDLRKYLTDYQKKRN 103

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++ +  +P   + + K        ++ E++++ +   +
Sbjct: 104 SSKVTIDNIRRIFSSFFSWLEDEDIIIKSPVRRIHKVKTPNNIKETYSDEELEKLRDNCT 163

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +  R     +           K      V         L 
Sbjct: 164 E-IRDLALIDLLASTGMRVGELVRLNRDDIDFEERECVVLGKGNKERIVYFDARSKLHLK 222

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
              + +              +++M+        +    + G+ K   H  R+  AT + D
Sbjct: 223 NYLLSRSDDNNALFVSLKKPQKRMSIGGIENRIRQLGREIGITKAHPHKFRRTLATNAID 282

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 283 KGMPIEQLQKLLGHERIDTTLHYA 306


>gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
 gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858]
          Length = 241

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 19/220 (8%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +  + ++  + ++S+R  + + +R+  +  NP   V   K +    + +  E+M+    
Sbjct: 6   QKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQ 65

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELP 238
              E       + R+  E L  +G+R S+           +    +   K      V   
Sbjct: 66  VVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFG 125

Query: 239 DGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 +      +               +N+    +             +KA +     
Sbjct: 126 VYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIH 185

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 186 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV 225


>gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis
           MSMB43]
          Length = 284

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 77/287 (26%), Gaps = 23/287 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            + +I  Y            S+   +    ++       D RK+    +R  V +R    
Sbjct: 3   FEDVIGIYMLEKKHR-----SKERDQYSLKRLQPHFSGRDLRKLKRGDVRRYVSARLADG 57

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184
              S+  + L  +     +   +                  E    W             
Sbjct: 58  VCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEAVELILAA 117

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239
              +     R      L +G R ++        +       +      K G    V L  
Sbjct: 118 GAAARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNS 177

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFS 293
           G +  L             ++    +++          F A   +AG+ +   H +R   
Sbjct: 178 GALSALRDQRDWVARHCAGSEWVFASSSGRRVSNLQKGFVAACARAGIEDFRIHDLRHTF 237

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
           A+     G + + +    G  ++   E Y   + D  R+ ++    +
Sbjct: 238 ASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGRVAVQKLSPL 284


>gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
 gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 116-1]
          Length = 336

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 28  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 84

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    +++ + +      R     + ++  + +  
Sbjct: 85  NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 139

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 140 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV         ++     K     + 
Sbjct: 199 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 250

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 251 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 311 MAYAHLA 317


>gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
 gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309]
          Length = 285

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 31/276 (11%)

Query: 88  AVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
           + ++  ++      ++           +     +T + +RS +          S+  +  
Sbjct: 2   SPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTLADGGARSTIARHT 61

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190
            ++R    WA+R+  +  +P   +  P+       P  + D +   +   + +       
Sbjct: 62  AAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLNTARDEAAAGGASQ 121

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     E     GLR S+ C   +  L     +++          V         L   
Sbjct: 122 IRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKERVVPYGPPAADALDHW 181

Query: 249 PIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
            +               F+ +   +++           A +AGV + + HG+R  +AT  
Sbjct: 182 LVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVHDIAPHGLRHSTATHL 241

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              GA    +    G  ++   + YT   D  RL  
Sbjct: 242 LQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSA 276


>gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4]
 gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4]
          Length = 378

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 110/356 (30%), Gaps = 40/356 (11%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  R+  +            ++ L     + E   +PR    T+  L+  + + +    
Sbjct: 25  TGKRRQKWVTVRGTKRDAEKVLAELLAKAGRGELGTAPRS--LTVAALLDMWLEVSR-RR 81

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLF 144
               + ++ E+         G     K+    +   +   +   +P++       +R   
Sbjct: 82  WKPGTAVAAETAVKTWKELLGHVPAGKLGPADVEKALARMEGELSPATCRYRFGLLRQAM 141

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLY 201
           +WAV+++ +  +P   V  P+   + +R W++E++ +F             +  F   L 
Sbjct: 142 RWAVKRKLLGQDPTEGVAPPRAPRKEVRVWSEEEIARFLGVLDSSGHRPAVKAFFRLALS 201

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------------------II 233
           +G+R  +      + +      +  ++T                                
Sbjct: 202 TGMRKGELLALRWEDVDFEKGCLYVRRTRCHHTGGVHEPKSPSSCRKVALDAGSLECLRR 261

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
                             +   F     + ++  + +  F++   +AGV     H +R  
Sbjct: 262 LKREQAREKLRAGAEWCEQGLVFATRKGKALSVFRLACTFRSLCRRAGVPEIRIHDLRHT 321

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            A++    G     +    G  +V    +TY+      +   +  + +   +  ++
Sbjct: 322 HASLLLRQGVHPKVVQERLGHSSVKITLDTYSHLLPDAQ--EQAVKALERALGGEE 375


>gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 343

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 82/307 (26%), Gaps = 21/307 (6%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR           AY + L     +    +  R+   +L+ L+  +    H   L
Sbjct: 19  RGGKRIR-KSFRTHAEAKAYENWLRVKAAENPDWSPVRRDSRSLRELVQLWYD-RHGREL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLF 144
           +                + G+      +     S    R     SA    +   ++R +F
Sbjct: 77  SSG--AGTRDRLFAACVEMGEPTVDSFSADVFASYRARRLEAGISASNMNREHATLRAVF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLY 201
               R         L   R  +  E    +  ++  +        S+     L     L 
Sbjct: 135 NELSRLGLWERENPLGKLRQFKVQERELSFLDDESIRELLRELRASRNPGAELIAVVCLS 194

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S++       ++N        K+     V + D     +                
Sbjct: 195 TGARWSEAETLTRSQVRNGQIQFARTKSRRNRAVPIDDRLQHRVLAHADEHGRGVRIF-- 252

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVD 317
                +     F+    +AG+   A    H +R   A+     G     L    G   + 
Sbjct: 253 -----STAFSAFREAVERAGLELPAGQLTHVLRHTFASHFMMNGGNILTLQRILGHANLT 307

Query: 318 QAETYTK 324
               Y  
Sbjct: 308 MTMRYAH 314


>gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri]
 gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 313

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 43/298 (14%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHT 129
            I  Y +        + N+  ++ +         G       T  H R  ++        
Sbjct: 4   AIDGYLEYLDLVKGRSANTVRAYGADLR--AAFEGVRTLDGFTLDHCRDVLDWAVENGDA 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
            ++  +  +S+R    W V    + +NP   ++ PK      R   ++ +          
Sbjct: 62  KATLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLEQARAH 121

Query: 186 ------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQK 228
                         +  +  +  E L  +G+R S+   A V+ L  N            K
Sbjct: 122 AHREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSLRVVGK 181

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFK 274
                 V         L      +                 F+     +++  Q      
Sbjct: 182 GDKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQVRTVVH 241

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
                AGV   + HG+R  +AT   D GA    +    G  +++  + YT    +R+R
Sbjct: 242 RATGGAGVPEIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLR 299


>gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
 gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17]
          Length = 334

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
            +         L+ N+  ++ +        +   G  D R++TT  +R  +  E+R H  
Sbjct: 9   AFLAYLRANRGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           SS  + + S+R  F WA     +  +P   +  PK         T+   ++      +  
Sbjct: 69  SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128

Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212
                                                 +     E L  +G+R ++    
Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258
            +  +  +  +I+          V   D   K LA          +              
Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                ++++           A ++GV   S H +R  +AT   D GA   E+    G  +
Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308

Query: 316 VDQAETYTKGA 326
           +   + YT  +
Sbjct: 309 LRTTQRYTHVS 319


>gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264]
 gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264]
          Length = 308

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 15/286 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       +      KK  + +    ++ K  +  +L   +   +++ F    +K  +  
Sbjct: 1   MKRRGELTDEELKIIKKKISDEEAYEKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQ 59

Query: 111 YRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +   K I   +    +    ++    L ++R  + +  + + +  NP  +++  + + 
Sbjct: 60  LVEWVQKDIEDLILKSKQLMKVTTINTRLRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQ 119

Query: 169 EGIRPWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           + I     +          K     G +  +     L +G+R S+     V+ ++ N   
Sbjct: 120 KTIETLDNQEIEKLIKTIRKQKTFVGFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLI 179

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKAT 278
           I+  K     TV L D   + L      +        FI+ D +++N             
Sbjct: 180 IRRTKNLFERTVYLSDTTQERLESYIKVRGEVATNKLFISQDNKELNPHSIQTRLTKYGK 239

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +A ++K  S H  R   A     +G  A  LM   G   +   + Y
Sbjct: 240 EAKISKRVSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRY 285


>gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 298

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 84/278 (30%), Gaps = 28/278 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            + +      +      + A ++  ++     ++          ++  + ++        
Sbjct: 3   DSFQKYYRAMQLELKLQAKAKSTVDNYLRALRRVNDLIAS-PLDQLKEEELKLYFSELVD 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ S+      ++   +++ +++E+  +          R        ++++     S  
Sbjct: 62  TYSWSTVKMDRCALSFFYQYVLKREWKWLEIVR----IPRVKSLPDILSQDETLLILSHL 117

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
            +  + R     +   GLR S+  R     +  +     ++  K      V LP    ++
Sbjct: 118 EKA-RYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPLPQVTYQM 176

Query: 245 LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           L    +      +   +              M+       FKA    +G+ K  S H +R
Sbjct: 177 LRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGLAKQVSVHSLR 236

Query: 291 KFSATIS----ADAGATAHELMATYGWKTVDQAETYTK 324
              AT       +AG     +    G  +      Y+ 
Sbjct: 237 HSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSH 274


>gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi
           NT]
 gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative
           [Clostridium novyi NT]
          Length = 387

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 110/380 (28%), Gaps = 54/380 (14%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +++T + K  Y++R  H    +    +  T               +E  N+        
Sbjct: 6   YRKKTVNNKEYYFYRLRHKNLKKPKDIYAKTVKELDSKI---KMIIKELDNNITNNKEYF 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE---SR 126
                ++  + H  +   ++   ++S F   I      D   +++    I++      +R
Sbjct: 63  GAFFKDWLYNTHMINKKPSTIERYDSIFRNYIEDSIIYDIKLKELNPSDIQNYYNVLVTR 122

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + SS       +    ++A     +  +   ++  PK K +     + +         
Sbjct: 123 GKSISSIKNLHKLIAPSIRYAYDSNRIMKDFSRAIIIPKDKEDTKLKKSSDVKPFTLEEQ 182

Query: 187 ------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G +  + F   L +GLR  +        +  +   I   K+   I       
Sbjct: 183 LKFIEAIKGHELEMLFLTALDTGLRQGELFALTWNDIDLDTRHISVNKSFKSIRNISTGK 242

Query: 241 FMKLLAMT------------------------------------PIGKETFFINNDKQKM 264
           +  ++                                              F N   + +
Sbjct: 243 YENIIQTPKTSNSIRLVPIPVHLIDKLKQHKLLQKTLKLKLANLYEDNTLIFCNKFGKYL 302

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
           ++      FK       + ++  H +R   AT   + G  A  +    G   +    +TY
Sbjct: 303 DSGNVLKKFKKILNDNNLNDRKFHDLRHTYATRLFELGEEAKTVQTLLGHSNISITLDTY 362

Query: 323 TKGADRIRLGIKNSRRISSV 342
           T   D ++   K   ++ ++
Sbjct: 363 THVLDSLK--EKAVSKLDTL 380


>gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 86/291 (29%), Gaps = 23/291 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG-DFDYRKITT-----KHIRSG 122
           T   L   Y               S E+   +      G D     +T        IR  
Sbjct: 123 TFGQLSMMYLDHLRVSGRTEKHIASLENLLKRMFFDILGKDTPVAGMTYLKDIVPFIRQM 182

Query: 123 VESRKHTP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
               + T      +S  ++   +  +F + +  E ++ +P    ++     E  R     
Sbjct: 183 QGVSQQTGKPRSQASVNRYCDYVDAIFNFGMEMELISKSPMKGRKK---AKEQPRDVQIG 239

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITV 235
                +      S  R A E     G R   S       +H+  +  +++   T T    
Sbjct: 240 IDDLKRIMDHAESHIRWAMEVCFNLGTRPGPSELFALRWEHVDFDAGTVRIYATKTKTFR 299

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV--NKSAHGVRKF 292
            +P     L+ +  +  ++      + +    T     F     KAG+  +   + +R  
Sbjct: 300 TVPVTESFLIRLREMRDQSQSGFIVEYEGKPLTTIRRSFNTACEKAGITVDVRMYDLRHL 359

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
            AT     GA    +    G  TV      Y    +  +   K   ++ S+
Sbjct: 360 FATTMLANGADLAAVSKLMGHSTVKMTADVYYHYLEGEK--EKAVGKLPSL 408


>gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
 gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855]
          Length = 353

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 89/312 (28%), Gaps = 40/312 (12%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKI 114
            P      L   +S+Y        L+ N+  S+++ F   I    +           + I
Sbjct: 18  KPTDFAKKLTDFLSKYL--PCERGLSTNTIESYKTTFILFITFMEEKKNIAVNKLAIKNI 75

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T ++I + +E     R  + ++    L ++   F++   +    +N    +   K K   
Sbjct: 76  TKENIIAFLEWLQSERHCSTATRNVRLAALHSFFRYLQYEMPENLNEWQQILSIKAKKNI 135

Query: 171 IRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +      +       QQ      +G +       +     R  +        ++     
Sbjct: 136 KKNVNYLTVDGIQLLLQQPDQSTKKGRRDLAMLSLMYDCAARVQEIIDLTPAMIRLTKPY 195

Query: 224 IKT-----------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                               +           L  +       F N+  +K      +  
Sbjct: 196 TIKVIGKGNKPRIVPLMEKQVIHLKRYLVENKLLESHANFSPLFSNSRNEKFTRQGIANI 255

Query: 273 FKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +  A  A V         S H +R   A     AG     +    G ++V   E Y + 
Sbjct: 256 LQTYANAARVKDSTLIPKLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYART 315

Query: 326 -ADRIRLGIKNS 336
            + + R  I+N+
Sbjct: 316 DSKQKREAIENA 327


>gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
 gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639]
          Length = 287

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 87/270 (32%), Gaps = 30/270 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----------------TKH 118
           +++  + +    + N+   +       +      D R++T                 +K 
Sbjct: 16  NKFILTLNLAGASENTIRLYSIAIKDFLDFV-KKDPRQVTNSDVNAWLLKILKSSTRSKR 74

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R   E R+   ++A  +LT++    KW  +              PK +   IR  T E+
Sbjct: 75  VREENEKRRMKLTTAKIYLTAVLRFLKWLGKDV--------KPTVPKARKNEIRALTYEE 126

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
           +++     ++  +  +    L+ +G+R  +     VQ +        I+  K G    V 
Sbjct: 127 LEK-LKASAKKLRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTKNGESRIVF 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                  LL       +    +     M         +    K G++   H +R   AT 
Sbjct: 186 FTSHTGALLKKYIQKNKKEPEDKLIN-MTYQALYRKLRRLGKKIGIDLRPHILRHTFATE 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
           +   G     +    G K +   + YT   
Sbjct: 245 AIRKGIPLPVVQKILGHKDIRVTQVYTHLV 274


>gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 345

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 93/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + + N+        +         + G  
Sbjct: 15  DEVYRQPVGPAHDPKSLYALLLRFVKWRRERNWSENTLKVQTHHDYRFIC--WASERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +        H         +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLYHYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNRCDLNTLQGMRDRALLELLWSTGIRRGEVARLESW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K S H  R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + R    +  
Sbjct: 313 YTQVSIRALQAVHA 326


>gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 383

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 87/359 (24%), Gaps = 39/359 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             +     R     Y      G + +       +       A +    K    ++   + 
Sbjct: 4   KNLASFEKRATGWRYRVSYKDGDKYKTKTQGGFSTKKEAAIAASELEKKISRGHNLNAED 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                 + E+ +    G  +++   +       +         + +     ++ +     
Sbjct: 64  KLFSEYMREWFEVYKKGKHSLSHEKNLLQSVKLVEEHFIGVRMKDLNRVLYQNFLNELSK 123

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +  +    ++   K+A+    +  +P                    + ++ K+  
Sbjct: 124 KRAKMTVKKKHNCVKACIKYAIEDGILHRDPTYKAIIHGENETKSEELKFINQEEMKNIV 183

Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237
            E           R    F + +G R  +        +     +I   KT          
Sbjct: 184 DELRANLTPQYISRYIILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFG 243

Query: 238 --------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                                           L       K   FINN  + +     + 
Sbjct: 244 NTKNYQSVRTITIDQETVSMLKDLQTYQKEHALKTGLRNTKNLCFINNQMEIITNNAVNK 303

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
             K    +  V   + H +R   A+I    G     +    G K +    +TY+   D 
Sbjct: 304 VLKKICARCNVKPITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362


>gi|157964586|ref|YP_001499410.1| integrase [Rickettsia massiliae MTU5]
 gi|157844362|gb|ABV84863.1| Integrase [Rickettsia massiliae MTU5]
          Length = 386

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 95/312 (30%), Gaps = 14/312 (4%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKS 81
                RI++    + + I A   A        +            K  T K L  +Y   
Sbjct: 57  DKKYHRIKIGVFPDLSIIDARAKASELKGEIAKGYNPVEEKVRLAKELTFKELYDKYLNE 116

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSM 140
               +        + +  D+  +         I    I+    +   T    A +FL  +
Sbjct: 117 YSKINNKR--WRDYAASIDRYAKHLYPRKISTIQKADIQELFNNLTKTGKYGANRFLEVL 174

Query: 141 RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             +F  A+  E + INP + ++   ++  +      +           E    +  F   
Sbjct: 175 SPVFSKAIEWELLTINPVIGIKKHKEQSRDRYLTREEIPRFFTAIAGEENQVMKDFFLIA 234

Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           LY+ +R  +      + +        +   K G    + L D  +++L        + ++
Sbjct: 235 LYTSVRKDNILTMRWEQVSFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSTSEWV 294

Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
              +   +    +    +K    KAG+     H +R+   +  A  GA  + +      +
Sbjct: 295 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 354

Query: 315 TVDQAETYTKGA 326
                  Y + A
Sbjct: 355 DPRSTAVYARLA 366


>gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
 gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides
           sp. VS]
          Length = 332

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 30/279 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS 131
           ++ +      G L+  +  ++     + I      G     +IT   +   ++  + T S
Sbjct: 31  LASFLLVCKVGQLSPATIHNYSYMVGKFIDFCSRNGVSTPPQITQLVVCLFIQELQMTNS 90

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S + +   +R    W    + ++I+P  ++  PK     I+P+ KE  Q      S  
Sbjct: 91  AQSVLDYFKQVRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLP 150

Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244
           +    + +      + +G+RC +     ++ L     +IK    G     V +     K 
Sbjct: 151 TLEARRNKAILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKA 210

Query: 245 LAMTPIGKETFFINNDK-----------------QKMNATQFSIWFKAKATKAGV---NK 284
           L      +     N+                    ++         +    KAG+     
Sbjct: 211 LLEYQFERMKLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGIRRMIENLGKKAGIQNLRC 270

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           S H  R   AT+S   GA   EL +  G  T+     YT
Sbjct: 271 SPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYT 309


>gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68]
 gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195]
 gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA17570]
          Length = 298

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 86/281 (30%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
           LIS Y         L+ ++  ++++   Q                H+ S +E    +   
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQFYNS---------DYDHVESYIEHLTQSNIK 55

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183
            ++  + +  M+V + +   Q  +  NP   +    + +    +    + ++        
Sbjct: 56  TNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFIYLEQ 115

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                       +  +  L    LL +G+R S+ C   ++ +   N    I  +     I
Sbjct: 116 KVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERI 175

Query: 234 TVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     +L               F   +  + ++     +  K    +  ++K+  
Sbjct: 176 LFLGDQTTFNILETYINKTGKESNDFLFPGKHLPKPLSEQSVRLILKRIVEQNSLSKTIT 235

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H  R   AT+  D       +    G  ++   + YT  +
Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276


>gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CDC1551]
 gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551]
          Length = 315

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 96/290 (33%), Gaps = 27/290 (9%)

Query: 71  LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK 127
           ++ ++ E+ +        +V++R ++      +     D       +T   +RS + +  
Sbjct: 18  VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 77

Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              ++     +  ++++    WAVR+  +A +P   ++ PK +        ++   +  +
Sbjct: 78  GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 137

Query: 185 FWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
               G         + RL  E L  +G+R S+ C   V  +      ++   K     TV
Sbjct: 138 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 197

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VN 283
                    L    +      +  +        A    +  +   T             +
Sbjct: 198 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 257

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 258 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 307


>gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034]
 gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 341

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 101/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA +  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 178 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +       +      N    +     F+  +     +AG       + + H +       
Sbjct: 235 VEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKVSGILTDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|160895946|ref|YP_001561528.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160361530|gb|ABX33143.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 412

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 104/365 (28%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59
           L P    + T  G+      Y    G  R+  L    E T   A   A       R    
Sbjct: 40  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAQVRRGGD 99

Query: 60  --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+  L  ++ +         ++R  ++   D+ I+   G    + +  
Sbjct: 100 PAADKAAARKAPTVTELCVKFMEDHSKQRNKPSTRRGYQGVIDRCIVPFLGRIKVQDVKR 159

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   ++   H P+ A +  + MR +F  A    Y           P            
Sbjct: 160 PDVAGAMKKMAHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRHVPVYPDGKATHLIS 219

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++         +G +          LA         R S+        +  +   +    
Sbjct: 220 DEDMGKLFRHLDGIEAEGLENYVIPLAIRLQFEFAGRRSEIISLEWAWVDLDNRRVVWPD 279

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282
           + T    +        L                 N+  + +   ++   +      AG  
Sbjct: 280 SKTGGMSKPLSEEAYRLLSTAPRRDGCPYVLPSPNDPAKHLTEGEYYGAWCRILKAAGAT 339

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   HG+R  SAT  A++G      MA    KTV     Y    D         R+ + +
Sbjct: 340 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED------DPVRQAAEL 393

Query: 343 VDSDD 347
           V +  
Sbjct: 394 VANRR 398


>gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412]
 gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026]
 gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE--------------------LPDGFMKLLAMTPIGKETFFINND-----KQKMN 265
                                      P      L      + T   +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 383

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 87/359 (24%), Gaps = 39/359 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             +     R     Y      G + +       +       A +    K    ++   + 
Sbjct: 4   KNLASFEKRATGWRYRVSYKDGDKYKTKTQGGFSTKKEAAIAASELEKKISRGHNLNAED 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                 + E+ +    G  +++   +       +         + +     ++ +     
Sbjct: 64  KLFSEYMREWFEVYKKGKHSLSHEKNLLQSVKLVEEHFIGVRMKDLNRVLYQNFLNELSK 123

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +  +    ++   K+A+    +  +P                    + ++ K+  
Sbjct: 124 KRAKMTVKKKHNCVKACIKYAIEDGILHRDPTYKAIIHGENETKSEELKFINQEEMKNIV 183

Query: 187 SE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237
            E           R    F + +G R  +        +     +I   KT          
Sbjct: 184 DELRANLTPQYISRYIILFAIATGARFGEIMGMTWDCIDLEERTITINKTWDYRDKNDFG 243

Query: 238 --------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                                           L       K   FINN  + +     + 
Sbjct: 244 NTKNYQSVRTITIDQETVSMLKDLQKHQKEHALKTGLRNTKNLCFINNQMEVITNNAVNK 303

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
             K    +  V   + H +R   A+I    G     +    G K +    +TY+   D 
Sbjct: 304 VLKKICARCNVKPITCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDE 362


>gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRTLG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
          Length = 331

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 102/319 (31%), Gaps = 18/319 (5%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR           A+   +  +   +E++  P     TL
Sbjct: 4   KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128
             L+  +           N      +       + G     ++T K I   R  + +   
Sbjct: 62  TELLGRWWIYHGKSHERGNIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGL 121

Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P+S  + L  M  +F K     EY + NP   V+R +     +   + E++ +  S   
Sbjct: 122 KPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS--M 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  A    L +G R S+      +H+ N + +    K G   T+ +    +K +  
Sbjct: 180 LDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKRIKT 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G+            +  +     +         ++ H +R   AT     G     L
Sbjct: 240 KNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITL 291

Query: 308 MATYGWKTVDQAETYTKGA 326
               G   + Q  TY   A
Sbjct: 292 QRILGHSNIQQTMTYAHFA 310


>gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 385

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%)

Query: 11  VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K  T+ GK  +  +           ++ ++    ++       +A          +  
Sbjct: 4   IKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEE 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
            + KP   + +  E+  +    ++  ++       F + I+   G      ITTK ++  
Sbjct: 64  EKPKPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKE 177
           V+   + T ++  ++   +  +  +AVRQ Y++ NP  +V  P        +    WTKE
Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKE 182

Query: 178 DMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219
            M  F +   + +     + F  L ++G+R  +        +                  
Sbjct: 183 QMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
            +      +      T+ +    M  L      ++  F+      M   Q          
Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGY 302

Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                 S          G+    + HG R    +    AG     +    G         
Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362

Query: 321 TYTK-GADRIRLGIKNSRR 338
            Y    A +         +
Sbjct: 363 VYAHVSAKQESEATAALAK 381


>gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii
           M21/2]
 gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 342

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     + +     ++A  ++ S++     +           I    I + ++  +   
Sbjct: 47  FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 105

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186
            S     +    +  +F+ A   + V  NP   + +     T   +              
Sbjct: 106 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKV 165

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
               +  L+   LL +G+R  +      Q ++ +   I  ++                  
Sbjct: 166 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 225

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               I V L      +       +  +         N T F   F+    +AG  +  + 
Sbjct: 226 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 285

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H  R    +     G     + +  G    +  E Y    + IR   
Sbjct: 286 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 332


>gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 414

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 93/309 (30%), Gaps = 22/309 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS----- 106
              ++      K+ TTL  +I  Y          SL+ +S   +       +R       
Sbjct: 93  ERLKQVYLGRDKEFTTLLPVIDRYLDHIAQQVGKSLSKDSLQKYTVVKTHFVRFLKSTYN 152

Query: 107 -GDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             D    + T   +       K   +    +A + L  ++ +  +A ++  +  +P L +
Sbjct: 153 REDIGLLEFTPSVVMDFELYLKTKANLAHNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDI 212

Query: 162 ER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           +    P  +           + +  +        R  F F  ++GL   D      + + 
Sbjct: 213 KFHTKPVDRGFLTEDEVSLIVAKDLTRLPRLELVRDIFIFSCFTGLAYIDVRNLTPEDIV 272

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                           +      + L    ++    +T+        ++  + + + K  
Sbjct: 273 VMDDKEWVMSKRKKTNIAFNVLLLDLPKAIISKYNHDTYRDGKLFPILSNQKTNSYLKEI 332

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLG 332
           A   G+ K  + H  R   AT+    G     +    G   +   + Y +  ++      
Sbjct: 333 ADICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDM 392

Query: 333 IKNSRRISS 341
            + + ++  
Sbjct: 393 EQFADKLGK 401


>gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 98/337 (29%), Gaps = 36/337 (10%)

Query: 14  ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G+       G    GRRI     +  +   A   A+       E          T
Sbjct: 7   YKRKDGRWECRISMGKDESGRRI-FRSFYGKSREEAEYKAMIAQGQADEEFA---VTEMT 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + L++E+        +  ++  ++       +I   G+     +  K I + +E +   
Sbjct: 63  FRELVTEWL-HVTASRIKESTAANYAMKAEKHLIPAFGEIKCCLLKAKDIYAFIERKLKE 121

Query: 130 PSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             S       +   + +F++A R+  +       V   K K E      ++ ++  K   
Sbjct: 122 GLSVRYLSDIMVLFKSVFRYASREYRIRNVLDGIVLPKKNKPEIAVMNKEQQLRLEKYLD 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244
              S   +     +Y GLR  + C    + +     ++   KT   +         KL  
Sbjct: 182 KRPSVTSMGISISMYMGLRIGEVCALQWKDIDLEKRTLTVSKTIQRVQCRTGARHTKLII 241

Query: 245 ---------------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                                L       E + ++  K+ +        F      A + 
Sbjct: 242 TEPKSESSKRTIPIPDCLLPMLRQFKDNGEVYVVSGRKKPVEPRTMQYRFAKILHNANLP 301

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               H  R   AT   + G     L    G  +V+  
Sbjct: 302 SFHYHSTRHLFATRCVELGFDVKTLSEILGHSSVEVT 338


>gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 489

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 90/310 (29%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               +      ++   TL  L  ++          S++  +   +       +       
Sbjct: 174 LERIKAEFLGKKEDIDTLSQLFDKHNADIAQQVGISVSAATLQKYNVCRRHFLEFLQNGY 233

Query: 107 --GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   IR      +       ++A + + + + +     +   +  +P L+
Sbjct: 234 RRADIKLSELTYTVIREFDIYLRTAVGQNANTATKTMKTFKTIVILGQKMGVLHHDPFLN 293

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D     + ++
Sbjct: 294 HRF-HLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTLDNI 352

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K     +  + + + K 
Sbjct: 353 VTLDDKQWIMTKRQKTSVEANVLLLDIPKSIIAKYSHKTYRDGKLFPILSNQKTNSYLKE 412

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 413 IADLCGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 472

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 473 MEQLADKLGK 482


>gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 394

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 86/278 (30%), Gaps = 14/278 (5%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               + + ++      E+ +      L   +   + + F+ +     +F    I+   I 
Sbjct: 97  KKKIKPENSSFYDYYLEFVERKRKEGLNPETIRVYMTTFNVLKEFKAEFRISDISLSFIE 156

Query: 121 SGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
              +  +    ++P        + R +     +      NP    + P  + + +     
Sbjct: 157 QFDDHMREVNGNSPGGRNPKHKNFRTVILDIQKHNIPVDNPYRWFKIPSSEVKEVYLDKS 216

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T  +  +     S+  +    ++F  + GLR SD+     + +      I+     T
Sbjct: 217 ELHTIMEYTERFDKSSKEYKILKMYQFSCFCGLRFSDTMDLRWKDIDFANCLIRRMMIKT 276

Query: 232 --IITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
              +   L      +L       +                 +   + +A  AG++K    
Sbjct: 277 KTEVITPLFPMARDILMERSNNGKLIGSDEKVFYNFAEPTVNQALRKEAKLAGIDKHITY 336

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R   AT+        +++    G K+V+  + Y K
Sbjct: 337 HSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRYLK 374


>gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
 gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571]
          Length = 302

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 33/289 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYR------------ 112
               +  +       + +  +  S+E           I R  G                 
Sbjct: 6   FSEWLKRFSHHLRMRNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLD 65

Query: 113 ---KITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                T   I   +      R +  ++  + ++S+   +++   Q  V  NP  +++RPK
Sbjct: 66  TEIDTTPMMINDFLAFLTSLRDYKATTLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPK 125

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            K + +R   K +            + RL    +  +G+R S+ C   ++ +      I+
Sbjct: 126 IKEKELRYL-KHNQVLSLFNSINNERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIR 184

Query: 226 TQKTG-TIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +  G  I TV + +  ++ +     G+     F     + ++       F+     A  
Sbjct: 185 VKGKGGKIRTVFIDEDTLQDINHYTSGRISGPLFEGQQGKNISPRTVQHIFERY---APT 241

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
             + H +R   A+           +    G  ++   E Y     D  R
Sbjct: 242 GITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR 290


>gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 407

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 109/341 (31%), Gaps = 39/341 (11%)

Query: 18  HGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           HGK   +  R    +                      S         P+    T   +  
Sbjct: 32  HGKGSRWRARYVDDQGREHARGFSRKVDAQAWLNGQVSDQVTGTWTDPKLSGVTFGVIAE 91

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG-----------VE 124
            + ++      A  +   + S  D  ++ +  D   R ++ + ++              E
Sbjct: 92  RWIQTKATR--APKTVAGYRSLLDVVVLPRWRDVPLRDVSFEDLQQWVSGLSVNGSTRFE 149

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  +PS  IQ    +  + ++AV+ +++  NP   +E P++     R  T E +Q+   
Sbjct: 150 GRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQRYLTHEQLQRLAV 209

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------- 233
                 + R     L Y GLR  ++    V  +  +   I+ +++ T +           
Sbjct: 210 A---SGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVTAVTGQGLVEGPTK 266

Query: 234 -TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVN-K 284
                     K LA     +    ++++    +              F A A   GV   
Sbjct: 267 NHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWVFDAAAVAVGVTGL 326

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           + H +R   A+++  AGA    L    G KT     + Y  
Sbjct: 327 TPHELRHTCASLAIAAGANVKVLQTLLGHKTAMLTLDRYGH 367


>gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str.
           G5101]
          Length = 356

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRGPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
 gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110]
          Length = 285

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 17/262 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +I  +     +   + ++R  + +   Q  +         +  + I+  ++S K    S
Sbjct: 11  EIIRSWL----FDKNSNHTRQLYNNTLKQF-QSFSSEPLSNVKIEDIQLWIDSLKLRGYS 65

Query: 133 AIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                     ++ LF +     Y+  N    V+ PK K    +        +     ++ 
Sbjct: 66  LHTIRVKVLCLKSLFSYCFDVGYLPFNVAARVKPPKPKETLSQRLLNVADIEKLIRATKT 125

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFMKLLA 246
            +  L    +   GLR S++ R   Q LQ      +    G       V +P G    L 
Sbjct: 126 HRDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAKLM 185

Query: 247 MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                +          +       ++     K  A  AG+    SAH +R   AT S + 
Sbjct: 186 AFQSLRSPHTDAVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATHSLEN 245

Query: 301 GATAHELMATYGWKTVDQAETY 322
           G     L  + G   +   + Y
Sbjct: 246 GCDISLLQQSLGHSDITTTQRY 267


>gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042]
          Length = 356

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 342

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 25/287 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     + +     ++A  ++ S++     +           I    I + ++  +   
Sbjct: 47  FEDWADTWFEGHK-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDG 105

Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFW 186
            S     +    +  +F+ A   + V  NP   + +     T   +              
Sbjct: 106 RSDSYISKARGMLYQIFQKAEANDLVRRNPVRLAEKMRATGTAKRKEAFTTAEVAHLMKV 165

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
               +  L+   LL +G+R  +      Q ++ +   I  ++                  
Sbjct: 166 LPDDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKD 225

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
               I V L      +       +  +         N T F   F+    +AG  +  + 
Sbjct: 226 SIRDIPVPLNVRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTP 285

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           H  R    +     G     + +  G    +  E Y    + IR   
Sbjct: 286 HSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 332


>gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82]
 gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010]
          Length = 338

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 96/339 (28%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y    +G+R+R           A+ S       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             LI ++       SL   +    +        I    GD    ++T        E+R  
Sbjct: 62  SELIEQWY------SLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K     +  
Sbjct: 116 GEVRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKITEGELAF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            + +++++  +  +E   P L       L +G R S++       +     +    K   
Sbjct: 176 LSVDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +       L        T                  F+    +AG++       H
Sbjct: 236 NRTVPISQDLYHELPKNRGKLFTPC-------------RKSFERAVKRAGIDLPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFA 321


>gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 439

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 87/348 (25%), Gaps = 45/348 (12%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT----------------------- 69
           +R           +Y  A+     +R+ +     +                         
Sbjct: 92  VRKEKRFHDESDESYQQAVEWENQQRQNLKKGIIEEVVAQIKKEVVEHKDSSVINSMSSV 151

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126
           TLK    +Y +      +   S      +F+ +I          +IT   +   ++   +
Sbjct: 152 TLKEFADQYVEYCTGR-INPRSVKEKRRHFNTLIAHFTESCFVEEITAFKMNKFLQEVLK 210

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T +     +  ++  + WA                 ++  E   P      +     +
Sbjct: 211 TKTGNMVNIIMKHLKAAWSWAGGFVEGFPQNSDPFRNIQKFPEQRHPRYVPPKEDLDKVF 270

Query: 187 SEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ELPD 239
                Q R+  +   Y+G R ++      + +  +   I+                 +  
Sbjct: 271 DVAEGQDRVMLKTFYYTGGRKNEIFSLKWEDVLFDSNQIRLWTNKRKHGNRESNLIPMVK 330

Query: 240 GFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
              ++L                                  + +    KAGV +   HG+R
Sbjct: 331 ELKRILTEWKKACPCESDYVFIEVRKKAPTYGQRYVYRKGFMERHCDKAGVKRFGFHGIR 390

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336
              AT   + G     +      K  +    Y      DR    ++  
Sbjct: 391 HLFATTLYNNGQPLAVVQKMMRHKNPNTTVRYLHEMGLDRALEAVEGV 438


>gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
 gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum
           S17]
          Length = 377

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 92/368 (25%), Gaps = 62/368 (16%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
              T   A                 P +    LK  +  +        L  ++  ++ S 
Sbjct: 3   RGRTKAVALKRLKDKKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRSV 62

Query: 99  FDQ-IIRKSGDFDYRKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFK 145
            +  I    G     ++  KH R   E             R  + ++A     ++     
Sbjct: 63  VEALIKPAIGGVRLGRLEPKHFRMMEEYITKGDDTCDPPRRPRSSATAGSAWRTLHKALD 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AVR+  +  NPC   E P+      +  T     Q  +  +      L +     +G+R
Sbjct: 123 DAVREGIIESNPCDRAESPRVVYTERKILTPAQAGQLINAEN-DVMWHLMWRLAYETGMR 181

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----------- 254
             +        +Q     I       +           + +                   
Sbjct: 182 QGERLGLTNSEIQLIDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAYLVPPKTN 241

Query: 255 -------------------------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283
                                           F+  D   +N    +  +K    + G+ 
Sbjct: 242 AGRRVIPLPESLAAELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLP 301

Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKNSRR 338
                H  R  +AT  A  G +     +  G   +      YT    AD  +  +     
Sbjct: 302 GDFVPHSARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AVNGVET 360

Query: 339 ISSVVDSD 346
           + ++  ++
Sbjct: 361 LLALEPAN 368


>gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1]
 gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC
           27678]
 gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1]
          Length = 367

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 102/344 (29%), Gaps = 32/344 (9%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +    T+ G   Y   +R     +              Y  A   +         P    
Sbjct: 3   IYSYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDY-LARMTTYIADNDYIDPNAGK 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           T +      + K      +        E  +   +    G+ +   I    I++ V    
Sbjct: 62  TLVCQFADTWLKGKK-NVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSELA 120

Query: 128 HTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S+ I       ++ +   AVR   +  NP    + P+++ +     T   +      
Sbjct: 121 KKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTYLTPAQVID--LA 178

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
            + G+   L      + GLR  ++    V+H+      ++ + +                
Sbjct: 179 HAAGTYQALILTLG-FCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTW 237

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN-K 284
               V +PD  M  +     GK    +          +  + +   W+      +GV   
Sbjct: 238 EVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPTL 297

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           + H +R  +A+I+  +GA    +    G K      +TY    D
Sbjct: 298 TCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFD 341


>gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
 gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS
           571]
          Length = 327

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 82/293 (27%), Gaps = 34/293 (11%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFD----YRKITTKHIRSGVE 124
            +  +         L+  ++ ++      ++       G          +    +R+ + 
Sbjct: 27  AVEGWLARLAHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAALAPADVRAVLA 86

Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +R+     P + ++ + + R   +   R+    +    +V  PK      +P +  D + 
Sbjct: 87  ARRMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSLPKPVSVSDAKA 146

Query: 182 FKSFWSEGSQPRLAFEFL---------LYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229
                +   + R  +               GLR S++       +           T K 
Sbjct: 147 LADPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPGGGDQITVTGKG 206

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV 282
                V L     + +A            +           ++A    +  +      G+
Sbjct: 207 NKTRMVPLLPQVTQAVADYAALCPYVLEPDKPLFRGAKGGPLSARIVQMAVERMRGALGL 266

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               + H +R   AT     G     +    G  ++   + YT   D  RL  
Sbjct: 267 PDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYT-AVDATRLMD 318


>gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6]
 gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 102/283 (36%), Gaps = 22/283 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             L+  +++S    + +  + I++    +  I+  G+ D   I  + I   V++     S
Sbjct: 4   DHLLDTWKRSLE-RTKSARTVITYIKSLESFIKHIGEKDLIHIDPRRIYEYVDTSSLNTS 62

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----------TEGIRPWTKEDMQQ 181
           S +  L++++  +K+A R+ YV       +E    +              +  T+E++ +
Sbjct: 63  SILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKRYPKALTEEEINK 122

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             S   +G++    +   LYSG+R S+           +   +   +    IT    +  
Sbjct: 123 ILSAV-KGAKYEKIYVLFLYSGIRLSEYLSLRKSDFYQDKSGLLWIRLSADITKRRKERL 181

Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           + +L  +                   +  ++      ++    + K  +  S H  R   
Sbjct: 182 VPVLGSSKEETYAVIDRLLVWIESYEENFRVKRGSLQVFTNRLSRKLCIPFSLHSFRHTY 241

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334
            T   ++G  A  +    G   V    + Y K + +R R  ++
Sbjct: 242 ITNLVNSGFPAEVVKEFAGHSNVRTTIDIYYKFSQERARQLVE 284


>gi|302039501|ref|YP_003799823.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607565|emb|CBK43898.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 437

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 94/345 (27%), Gaps = 39/345 (11%)

Query: 12  TKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            K R   G    +         +RI +  P +     A           +      +   
Sbjct: 16  VKIRQWKGAWWIFIDHQGMRKAKRIGIGEPGKKAAKLAAQQIQARLALGQPAFQGQKSG- 74

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE--- 124
            TL+     + +          + + +    ++ I+      D + IT + +++      
Sbjct: 75  MTLERYTEVFLERIEHAR-KRTTFVDYTKILNRDILPTLRGLDLQDITREKVKAMALAGL 133

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181
            R  +P +    +  +  L   A+    V +NP L   +   K       T    ++   
Sbjct: 134 QRGQSPKTMQNIVRCLSSLLSHALEDNLVTVNPALKPGKFLPKITKRHKITPLTREEVAL 193

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
             ++  ++  +    F   + +GLR  +        +      I+ Q+  T         
Sbjct: 194 LIETAKAKLPRYYPLFLCAVRTGLRMGELLALQWGDIDWQGRFIEVQRNYTHFRLTTPKS 253

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKA 275
                             +          +         F +     ++        F  
Sbjct: 254 GESRRVDMSRELAQTLRDLLTERQIEAAASQWTDTPAWVFCSETGGLLHPHNLRDRVFYG 313

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             TKA + K   H +R   A++    G +   +    G  ++   
Sbjct: 314 LLTKAKLRKVRFHDLRHTFASLLLQQGESLVYVKEQMGHSSIQVT 358


>gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 287

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 18/285 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129
           K L+ +Y +     SL+ +S   +++  +  ++   D    +  +T +       S   +
Sbjct: 6   KELVKKYLEFH--TSLSKDSLKYYKAGLNAFMKYFPDENKSWENLTVEDAIFFYRSYNVS 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I+ L  +   + WA++Q+Y+  NP  +     R  +  R +  E   +      + 
Sbjct: 64  KNTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKD 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
                   FLL +G+R S+     V+ +      I            V +       L  
Sbjct: 124 FNYYTYTLFLLKTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYVFMDVELASRLEY 183

Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATI 296
               +        N    K                             + H +R   AT 
Sbjct: 184 YLEMRILTNLSCNNFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRITPHILRHTFATA 243

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             + G     L    G + +     Y    ++  L  +  + ++ 
Sbjct: 244 MLEKGMDLKSLSLILGHEDIKTTSQYLHK-NKEALQKEYLKAMAR 287


>gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 328

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 91/327 (27%), Gaps = 35/327 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+R+R           A+          + +    R     L
Sbjct: 4   RKQASGKWLCECYPHGREGKRVR-KQFATKGEAVAFERFTMEQAENKPWTVEKRDTCK-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-------IRSGVE 124
             LI  +        + +N     +S  D      GD   R  +          I     
Sbjct: 62  SDLIDVWY---RAHGITLNDGEGRKSILDCAGASLGD-PARDFSVYREKRLNGEISHNGR 117

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K +P++  + L+  R LF    R         L   RP + +E    + ++D      
Sbjct: 118 EAKISPTTVNRELSYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARLL 177

Query: 185 FWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              E S+ +   L  +  L +G R S++       L     +    K     TV + +  
Sbjct: 178 HECEASKAKDLLLIVKLCLSTGARWSEAEELTRFQLSPYRVTFTKTKGKRNRTVPISETL 237

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATIS 297
              L                     +     F+    +A +     + +H +R   A+  
Sbjct: 238 YNALPRNNGRLF-------------SGCYNAFRKAMERADIVLPAGQCSHVLRHTFASHF 284

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     L    G   +     Y  
Sbjct: 285 MMNGGNILVLQRILGHTDIKMTMRYAH 311


>gi|255307072|ref|ZP_05351243.1| integrase [Clostridium difficile ATCC 43255]
          Length = 370

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 109/365 (29%), Gaps = 38/365 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++  +   F      + +                L                  T+ 
Sbjct: 6   RKRNKNYVVYLEFEDEKTGKRKQKNMGTFDKKREASKRLNEVKESLYNDGFLVPSEITVS 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             + ++       ++++ +  ++ S     I    G +  + +   HI++ ++   +   
Sbjct: 66  EFLLDFLNKYS-ENISLATYNNYVSICKNYINPSIGRYKIQDLHPVHIQNYIDKLSYKLN 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    +  +++  K A R + +  N   S+E P+ K      + +E M +      + 
Sbjct: 125 PQSIKIHINILKLAIKRAYRLKLIKENVMDSIEAPRYKKFKNEIYDREQMIKLLDLA-KN 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           ++  L     +  GLR S+       ++     +I   K  +                  
Sbjct: 184 TEMELPINLAIGLGLRISEVLGLTWDNIDFEENTITVNKITSRINGSVILKEPKTESSVR 243

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
            +  P   M LL    I +                F N   + +     S  FK    K 
Sbjct: 244 KISSPKELMSLLKEYKIKQNKNLLKSSIRNNNNLLFFNKKCEPIAEDVMSKKFKRFLEKN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
            +     H +R    T+  ++      +    G   +      Y+       +  + S +
Sbjct: 304 ELPHIRFHDLRHSHVTLLINSKVPIKVISERVGHSNISTTLSVYSHVL--KEMDKEASDK 361

Query: 339 ISSVV 343
           IS  +
Sbjct: 362 ISESL 366


>gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 81/276 (29%), Gaps = 24/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
             LI  +R         +V++  ++++  ++++                  +    +R+ 
Sbjct: 19  SALIDRWRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAF 78

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + SR+       SA + L+++R   ++      +      P +    P+  +        
Sbjct: 79  LTSRRMDGIGNLSAARELSAVRGFLRFVGGEDARPPRLKGPRVKRGLPRPVSPDEAMALA 138

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            D+ +       G++       L  +GLR  ++                T K G    V 
Sbjct: 139 ADIAETAREGWIGARDWAVLLLLYGAGLRIGEAMGLTGAVWPLGDTLRVTGKRGKTRLVP 198

Query: 237 LPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           L       +                 F       ++        +    + G+    + H
Sbjct: 199 LLPQLRAAIESYVAACPYPLERDAPLFRGARGGPLSPALIRRAVQGARGRLGLSERTTPH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT     GA    L    G  ++   + YT
Sbjct: 259 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYT 294


>gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Rv]
 gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis
           AF2122/97]
 gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
 gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           F11]
 gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           02_1987]
 gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           EAS054]
 gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T17]
 gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           T46]
 gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           K85]
 gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           210]
 gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN 4207]
 gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN R506]
 gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC
 gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC
 gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC
 gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC
 gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC
 gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis
           H37Rv]
 gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97]
 gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C]
 gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra]
 gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11]
 gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435]
 gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46]
 gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A]
 gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605]
 gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85]
 gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17]
 gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987]
 gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054]
 gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001]
 gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002]
 gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003]
 gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004]
 gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005]
 gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006]
 gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007]
 gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008]
 gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009]
 gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010]
 gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011]
 gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012]
 gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A]
 gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148]
 gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207]
          Length = 298

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 94/288 (32%), Gaps = 27/288 (9%)

Query: 73  WLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHT 129
            ++ E+ +        +V++R ++      +     D       +T   +RS + +    
Sbjct: 3   AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  ++++    WAVR+  +A +P   ++ PK +        ++   +  +  
Sbjct: 63  GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122

Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G         + RL  E L  +G+R S+ C   V  +      ++   K     TV  
Sbjct: 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKS 285
                  L    +      +  +        A    +  +   T             +  
Sbjct: 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            HG+R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 290


>gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a]
 gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a]
          Length = 335

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 95/316 (30%), Gaps = 19/316 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G+     R       R+       +    +   +  +   + +   P  +   L 
Sbjct: 9   KQLKDGRYKVDVRPQGTEGKRIRKIFTLKSKAQEFERYVLQNFHDKPWQAKPADQRR-LS 67

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
            LI  +               ++    ++I R+  D    ++T K +      +      
Sbjct: 68  ELIDAWW---VLDGRNQPYGDTYRVRLEKINREMRDPCASEMTRKFMLGYRSDKLQAGLM 124

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           PSS  + L ++  +F   +  + +   NP   + + K +   +   + +++ +       
Sbjct: 125 PSSVNRDLCALSAMFTSLIDAEVFHNENPVRGIRKLKVRNTEMAFLSDDEIDRLLER--L 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R      L +G R  ++     +H+  N       K G    V + D  + L+   
Sbjct: 183 EGDARRVAVLCLSTGARWGEAAGLRGEHIVGNRVMFFNTKNGKSRAVPVSDTVLSLIKTR 242

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
             G                 F    +         ++ H +R   AT     G     L 
Sbjct: 243 KTGLLYQADYIR--------FRDILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQ 294

Query: 309 ATYGWKTVDQAETYTK 324
              G  T+ Q  TY  
Sbjct: 295 RILGHTTIQQTMTYAH 310


>gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 274

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 73/263 (27%), Gaps = 11/263 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKH-IRSGVESRKHTPSS 132
              +         + ++  ++           GD     ++   + I +  +       +
Sbjct: 2   FDSFNTILTAKRYSDSTVTTYIGLLVSYQNYLGDSRPLERLDLSYLITTLRDFILKKEYT 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +  +     ++         S+     +       +  +++      +   + 
Sbjct: 62  FNTQKQLISAV-SLYYKEALRQEIDLSSLRPRSPQRVLPDILSTYEVKSILHHTT-NLKH 119

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI 250
           + A   +   GLR  +     +  +     +I  +  K      +  P+    LL     
Sbjct: 120 KAALTTIYALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQYYK 179

Query: 251 GKETFFINND---KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
             +      +   K +  A      F+A   KA + K  + H +R   AT   D+G    
Sbjct: 180 EYKPTDYLFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDSGTDLR 239

Query: 306 ELMATYGWKTVDQAETYTKGADR 328
            +    G   +     YT    R
Sbjct: 240 MIQELLGHSDIKTTMIYTHVTTR 262


>gi|320540499|ref|ZP_08040149.1| putative phage integrase [Serratia symbiotica str. Tucson]
 gi|320029430|gb|EFW11459.1| putative phage integrase [Serratia symbiotica str. Tucson]
          Length = 372

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 40/342 (11%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G + Y  +    G+RI+           A                       T +   
Sbjct: 5   RRGNVWYGNYTTPGGKRIKESL-GTEDKRQAQELHDRRKAELWRIEKLGDFPNVTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------------IRS 121
             + +          S  + +      ++       + IT                 I  
Sbjct: 64  LRWLEEKSEKK----SLDTDKVIISFWLKYFEGVKLKDITESENWKARVASATKKGEITP 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +  +  + ++   +L  ++ LF+    +E+  I+  LS++ P+ K + IR     + ++
Sbjct: 120 ELTQKSSSTATKAVYLAFIKALFR-VAEREWKWIDKALSLKVPQPKNKRIRWLEPHEAKR 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229
                 E    +   +F L +GLR S+      Q                          
Sbjct: 179 LVDECPE--PLKSTVQFALATGLRRSNIINLEWQQTDMQRRVAWINPEDSKSGRAIGVAL 236

Query: 230 ----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284
                 ++  ++      +   T     +        +      +  +K    +AG+   
Sbjct: 237 NDTACKVLRNQIGHHHRWVFVHTKASNRSDGTITPSVRKMRVDSNTAWKMALKRAGIENF 296

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+    +G +   L    GW++++    Y   A
Sbjct: 297 RFHDLRHTWASWLVQSGVSLSVLQEVGGWESIEMVRRYAHLA 338


>gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 90/337 (26%), Gaps = 37/337 (10%)

Query: 25  FRKGHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           ++K    R +  Y          +  Y  AL         +          +     + +
Sbjct: 4   YQKDGSPRFKTFYGKTQKEVKLKLKEYQDALISGIQLDTILY--------FEDWADTWFE 55

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137
                ++A  ++ S++     +           I    I + ++  +    S     +  
Sbjct: 56  GHR-DNIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKAR 114

Query: 138 TSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +  +F+ A   + V  NP   + +     T   +                  +  L+ 
Sbjct: 115 GMLYQIFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPDDRMGLSI 174

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------IITVELP 238
             LL +G+R  +      Q ++ +   I  ++                      I V L 
Sbjct: 175 RLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLN 234

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                +       +  +         N T F   F+    +AG  +  + H  R    + 
Sbjct: 235 VRPCAIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQ 294

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               G     + +  G    +  E Y    + IR   
Sbjct: 295 MQALGVDIQTIQSIVGHADTEMTEHYLHVQESIRQSA 331


>gi|154496779|ref|ZP_02035475.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
 gi|150274031|gb|EDN01131.1| hypothetical protein BACCAP_01072 [Bacteroides capillosus ATCC
           29799]
          Length = 349

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 93/316 (29%), Gaps = 51/316 (16%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKH 118
              K+  T    I EY        L   +  S+E       R      G     +IT ++
Sbjct: 19  RKAKQEKTFDTCIDEYLYYCQSRRLRPKTMASYEQTLRLFERWIRDQEGLERPSEITEQN 78

Query: 119 IRSGVESRKHTP----------------------------SSAIQFLTSMRVLFKWAVRQ 150
           IR  +   +                               ++   +L ++R  F+W   +
Sbjct: 79  IRHYICDLQERGKYSFYICDRAKETNLPERRRDYRTPISVTTINNYLRNLRAFFRW-YEE 137

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRC 206
                NP   V+    + +        ++++        +   ++ R     +L +G+R 
Sbjct: 138 CSGGKNPMAKVKLLSNERKPREYLEDAEVKKLLDSLDKSYFSENRDRTIILLILDTGMRL 197

Query: 207 SDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            +  +  ++++  +   I              V       K L      K+ +  ++   
Sbjct: 198 GECLKLSMEYIDMHERVISIPAELTKGRKARCVYFSIKTAKALQQWLRFKDRYVESSYIF 257

Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                        F   F+    ++G+ K  S H +R   A     AG   + L    G 
Sbjct: 258 PTKESGMPLELRSFESNFRRYVMRSGIQKEISPHALRNNFAKRCILAGMDIYTLSRILGH 317

Query: 314 KTVDQAET-YTKGADR 328
            +V   E  Y    D+
Sbjct: 318 SSVTVTEKAYLDLTDQ 333


>gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae]
          Length = 320

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680]
 gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 393

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 107/377 (28%), Gaps = 41/377 (10%)

Query: 1   MTPSLRLPPF---VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  R P     + + +    +   Y  +  G R R      +       +       +
Sbjct: 1   MAPRKRNPNGSGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGTT--WEECDTKRQELVLR 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
                    +   L   +  + K        +++   +E      ++   G      ++ 
Sbjct: 59  DRQGIPTPTRSAKLSEWLPYWLKHYVEPRRKLSTYDKYEVQVRLYLVPLLGTRRLESLSV 118

Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +R  +      HT ++A +    +R     AVR+E +  N    VE P+ K   IRPW
Sbjct: 119 ADVRRFITRVQNAHTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPW 178

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + E+   F            AF   +  GLR  +        +  +   +  ++      
Sbjct: 179 SLEETLSFLEAARSDP-LYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRR 237

Query: 235 ---------------VELPDGFMKLLAMT--------------PIGKETFFINNDKQKMN 265
                          V +P   +  L                        F   + + + 
Sbjct: 238 GTLYDDDPKSRRIRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVE 297

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
                  F   A  AG+     H  R   AT+   AG     +M   G   +      YT
Sbjct: 298 PRNVYRSFTRVAADAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYT 357

Query: 324 KGA-DRIRLGIKNSRRI 339
               D  R  I +  R+
Sbjct: 358 HVVHDTQREAISHMDRL 374


>gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC
           33656]
 gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 83/268 (30%), Gaps = 21/268 (7%)

Query: 76  SEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            +Y     ++    +L   S   +++Y    +         ++T + +R  + ++K    
Sbjct: 3   EKYLLQLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDNGL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++   + +++R  ++       + +               +      D        ++
Sbjct: 62  KATTLNLYNSAIRFFYR-----NVLHVLWDDITVPRMIIEHKLPTVLSTDEIDRLLDATD 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +  F  +  SG+R S+        +   N    ++  K        L +  + LL 
Sbjct: 117 DLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLT 176

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGV-NKSAHGVRKFSATISADA 300
                K          +      +        +  A+ AG+   + H +R   AT   + 
Sbjct: 177 EYWFRKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQ 236

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G     + A  G +     E Y   +++
Sbjct: 237 GVEQRNIQALLGHRDPKSTEVYLHVSNK 264


>gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 385

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 103/366 (28%), Gaps = 51/366 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +G   Y  R       R     +  F        A        EY         ++
Sbjct: 5   RKHSNGTWEYRIRYKDKNSNRYKETSKRGFKTKKEAQLAAAQIETDIEYYGFANDGKESI 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--H 128
           +   S++ +     ++   +    E      I+ + G+   + I+    +  +   +  +
Sbjct: 65  REYFSKWLEVYKKPNVKPITYSLQERNVRLNILPRWGEVKLKDISRTEYQKWINELRLNY 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKT-----------EGIRPWTK 176
           +  +  +  + M      AV +  +   NP   ++ PK              +  +   +
Sbjct: 125 SEGTVRRIHSLMNTALNDAVHEFRILRENPVTRIKIPKETKNNKEIKFFTVDQLEKFLNQ 184

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------- 222
               Q  S +    Q  + F  +  +GLR  ++       +                   
Sbjct: 185 VKEPQKNSKYKHSIQYYVLFSLMARTGLRIGEALALTWNDIDFEEGTIKVSKTLVYPTNS 244

Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                              I T +      +   +  +K       G +  F  +D + +
Sbjct: 245 TPYLSTPKSKAGLRIIKLDIHTIQLLKKHRINRNEVVLKYKNYKKPGADIVFYQHDGRWL 304

Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
                  +FK    +A +   S H +R   A    +A A    +    G  ++   A+TY
Sbjct: 305 RTNVVREYFKEICKRAELPILSPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTY 364

Query: 323 TKGADR 328
                +
Sbjct: 365 LHVTKK 370


>gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1]
          Length = 396

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 57/329 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121
           +      + L  E+ ++    +L   +   +E       +I    G     KIT + I++
Sbjct: 63  KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119

Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            V S               P +    L+ +  +F +AV+   V  NPC  V  PK     
Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCTKVTLPKNNQAE 179

Query: 171 IRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------- 222
            + +T E +Q+F S   +E  + R  F  +++SG R  +      + +            
Sbjct: 180 KKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFENNIISVRRT 239

Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                     +  T+   +  T++ P   M +L      ++   +    + + A +    
Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVEADRLYTK 299

Query: 273 FK--------------AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +K                  K  +     H  R   A++  + G     +    G  TV 
Sbjct: 300 WKGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345
                Y        +  +   ++S  V +
Sbjct: 360 TTSNIYCH------MLEEAQAKVSEAVSA 382


>gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95]
 gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95]
          Length = 306

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            +   K    ++  ISE+     +    A ++   ++       +         +T    
Sbjct: 7   TSDSIKDKDKIEGYISEFLSYLKFVKRRADSTIYEYKKILKSYKKF---VQIYGLTRGCF 63

Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              +E   + +  +    +  ++    +      ++          K  ++  +  T+  
Sbjct: 64  LKYLEEISNLSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQ 123

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITV 235
           ++ F     E    +  +  LL +GLR S++     + +         +   K   +  +
Sbjct: 124 IKVF-FSVIEDKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVRYL 182

Query: 236 ELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAG------ 281
           ++   + + L               +  F N++   + +      FK    KA       
Sbjct: 183 KISKQYAEQLITFAEKNTPKGAQGKKYIFSNDNDVPITSRTMERRFKDYVIKANNKIDQL 242

Query: 282 ----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                     +N + H +R   A    ++G    E+    G  T+     Y + 
Sbjct: 243 RTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRS 296


>gi|269926673|ref|YP_003323296.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790333|gb|ACZ42474.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 357

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 101/356 (28%), Gaps = 34/356 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R R G+ +       GRRI                 L  +   R    +      TL+ 
Sbjct: 11  YRRRDGRWVAAV-VHAGRRISRYAKTRREAQKQLRELLEAAAEHRLVPPN----KLTLEQ 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-PS 131
            ++E+ +      L V++R++++   +  I    G    + +    +   +       P 
Sbjct: 66  YLAEWLE-VRSRELRVSTRVNYQRLIEQHICPALGGRRLQALAALELSRWLAGLGERLPR 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            A +    +      AVR   +A NP   VE PK +          D         E  +
Sbjct: 125 RAQEAYALLHKALADAVRLGLLATNPLDRVEPPKHQRRRP-TLPARDQIALLIAALEAGK 183

Query: 192 PRLAFEFLLY---SGLRCSDSCRAGVQHLQNNI----------------FSIKTQKTGTI 232
                E LL+   SG R  ++       +                         +     
Sbjct: 184 AGWYSELLLFLLGSGCRIGEALGLEWGDVDWQEGSVRISRQLLEVGGEVHESPPKSRAGE 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK-SAHGV 289
             + LP   ++ L      K   +                    A   + G+ +   H +
Sbjct: 244 RVIALPAFALEALRQQRAKKLGKYCFLSSTGTTPCRRNVLRALHAVCAELGLPRLRIHDL 303

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
           R   A++ A AG       +  G  +     + Y    D      + + R+  V+ 
Sbjct: 304 RHVHASLLAHAGVPPKVAQSRLGHSSPMVTLQVYQHVLDGA--DREAALRLERVLG 357


>gi|241662627|ref|YP_002980987.1| integrase family protein [Ralstonia pickettii 12D]
 gi|240864654|gb|ACS62315.1| integrase family protein [Ralstonia pickettii 12D]
          Length = 412

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 92/328 (28%), Gaps = 25/328 (7%)

Query: 20  KIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPTTLK 72
           +    +RK + +  RI++    + T   A   A+  +           +   R+   T  
Sbjct: 51  RTFVLYRKVNRKPERIKIGRYPDLTVEKARTQAMALNGEIATGTNPAELKRIRRAEMTFG 110

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESR 126
            L  +Y K+    +    +    +  FDQ +                I+   I       
Sbjct: 111 DLFDQYYKNHSLPNKK--TSDEDKQKFDQYLSSNRDGVNLASRQLSAISKADIAQLFGKI 168

Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +A + L  +  +F  A+              R  R+    R    +++ +F   
Sbjct: 169 SMEHKITANRVLALVSSIFGKAIEWGIWNQMNPCQGIRRNRENSRDRFLHPDELPKFFEH 228

Query: 186 W--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFM 242
                 +  R      L +G R S+      + +       +  +T       +P     
Sbjct: 229 VLAYPNATLRDYMLVSLLTGARRSNVLAMRWEDVNLERAEWRIHETKNGTPQSVPLVPDA 288

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATI 296
             L            +                   +K   T+AG+ +   H +R+   + 
Sbjct: 289 VALLRNRQEMPECEDSPFVFPGTGKSGHLVEPKKAWKIVLTQAGIKDLRLHDLRRTMGSW 348

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
            A  GA    +  +   K+      Y +
Sbjct: 349 QAGTGANLSVIGRSLNHKSTATTAIYAR 376


>gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 336

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 28  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLTELLDIWWK-YHGQ 84

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    ++  + +      R     + ++  + +  
Sbjct: 85  NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYR 139

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 140 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLTG-DDLLVALLC 198

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV         ++     K     + 
Sbjct: 199 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 250

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 251 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 310

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 311 MTYAHLA 317


>gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
 gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 86/274 (31%), Gaps = 14/274 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PRK+  + K  ++++ ++      +  +   +    +Q++ K      R++TT+ +R 
Sbjct: 35  REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYRVTVEQLLNKV-VRPVRRVTTEEMRE 93

Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 94  YLVDYQKINNCGKTTVDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           D+++         +     + L  +G+R  +  R     +  +               V 
Sbjct: 154 DIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKERRVY 212

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289
                   L      +                        I  +    K  +++   H  
Sbjct: 213 FDAKSKVHLINYLKSRTDDNPALFVSLDRPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 272

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R+  AT + D G    ++    G   +D    Y 
Sbjct: 273 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 306


>gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
 gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756]
          Length = 376

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 107/348 (30%), Gaps = 41/348 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G     F    G+R    +      +    + +  +T   E+ +        +      +
Sbjct: 20  GLYSARFVDRFGKRKHKRF----KKLQECRAWIADATYVDEHSDISMPSDILVDQWFDYW 75

Query: 79  RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI 134
                  ++  N+  ++ E Y   I    G+     +     + I   +  +++  S+  
Sbjct: 76  IGIKK-KTVRSNTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIY 134

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           Q   ++  +F++A   E +  NPC   V+    K    +     D+Q+    ++E     
Sbjct: 135 QARIALYNMFEYAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAENQSYE 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240
             + F+L +GLR  +      + +     +I+ +++                        
Sbjct: 195 NQYRFILQTGLRTGELVGLKWEDVDFKSKTIQIRRSMEYRYSAKEWRIGEPKSKSGYRTI 254

Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                             ++  ++   +E  F+      +  + +         KA + +
Sbjct: 255 PLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPR 314

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            S H +R   AT   +AG     L    G   +      Y    +  +
Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|126436488|ref|YP_001072179.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236288|gb|ABN99688.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 387

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 110/366 (30%), Gaps = 41/366 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----------PKREYINSPRK 66
            G+    +         L      +    ++ A                P  E     + 
Sbjct: 25  SGRWQASYLHNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRRPGEWTPPAERAARRQA 84

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TL+     +  +     LA  +R ++  +  + I+   GD    +IT +H+R+    
Sbjct: 85  EKLTLRTYAKTWLDNK--TKLARRTRDNYRGHLDNHILPVLGDLGLAEITPEHVRTWFAG 142

Query: 126 RKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +   Q    +  +F  AV  + +  NPC      + K         +  Q  + 
Sbjct: 143 LGTEHDTRNAQAYAILNGVFNTAVADDLIERNPCRIKGAAQVKHAKRSVVLLDAAQLTEL 202

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +     RLA     +  LR  +        +  +  +++ ++  T    +   G  K 
Sbjct: 203 AAAMPDDARLAVLLAGWCALRKGEVFALRRCDIAADGSTVRIERAVTYREGKFEVGPTKT 262

Query: 245 LAMTPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAG 281
                +      +        A                         F   ++A     G
Sbjct: 263 RESRRVVSVPPHVRPAVVDHLARHVGEGDEALVFTEPSTGSFAGEKRFRTAWEAAREAIG 322

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                 H +R     ++A AGAT  E+M   G  + + A  Y   A+     +  + ++S
Sbjct: 323 QPQLHFHDLRHAGGVMAAQAGATLREVMDRLGHTSPNMAMRYQHTAEGRAAAL--ADKLS 380

Query: 341 SVVDSD 346
           ++  ++
Sbjct: 381 ALAATN 386


>gi|268610890|ref|ZP_06144617.1| phage integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 347

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 88/341 (25%), Gaps = 26/341 (7%)

Query: 11  VTKERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +  ++   G            +G+RI   +            A+  +T            
Sbjct: 1   MKAKKLPSGNYRVQVVAGHDENGKRIVKSFTASEE-----WEAIKLATDFACRREQNYDN 55

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--S 125
             T+   +  Y  S     L   +   +        +   +   R I    I+  +   +
Sbjct: 56  NMTVAQAMEMYIDSRR-NVLEETTIRDYNQVLKYRFKTLMNVKVRDIKPIQIQRAINLEA 114

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K +P +       ++ + K       +        + PK + +     + E++      
Sbjct: 115 EKVSPKTVKNAYGLLKSVLKMFNADINLNSV-----KLPKLRKKEKELPSFEEVFTIVKG 169

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   LA    L  G       R      + +      I+T +   +      +   
Sbjct: 170 TEIELPVLLAAWLSLRIGEVIGLQFRDIDKETRRISIRRTVIRTDEGLKVREGCKTEKSQ 229

Query: 243 K------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +       +    +  E     +    +        F     +  +  + H +R  +A+I
Sbjct: 230 RQLELPNYIFDMIMAIEHDSDEDFIVPLTRKALYSRFTRLMKRNDIKMTFHDLRHLNASI 289

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336
               G      M   GW T    +  Y +     R  I   
Sbjct: 290 MLMLGVPDKYAMERGGWSTDSILKSVYQQTFSSERKKIDKM 330


>gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94]
 gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94]
          Length = 375

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 18/304 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +    Y   +       E+  +   +   L  LI  + K       
Sbjct: 69  RKGKRIR-KKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRP-LSVLIDLWWKYHGQLMK 126

Query: 88  A-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVL 143
           +  N+         ++     D    K+ T  +   R     +   PS+  + + ++  +
Sbjct: 127 SGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQGIQPSTINREIGALSAM 182

Query: 144 FK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           F        ++  NP   ++  K K   +   +K +  Q     +E    RLA E LL +
Sbjct: 183 FTALISSGHFLNDNPVQGLKGMKVKEREMGYLSKSECVQLLDALAENPDERLAVEILLST 242

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +      + + +   +    K     TV + +   + +           ++    
Sbjct: 243 GARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKIKKRGGKLVFPTLD---- 298

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               +      K  A      ++ H +    A+     G     L    G   +     Y
Sbjct: 299 ---YSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIY 355

Query: 323 TKGA 326
              A
Sbjct: 356 AHLA 359


>gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a]
          Length = 337

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++   +       + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVV--RIHGILEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 328

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 81/262 (30%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  S   ++   ++++ +  D   R+I+T  +R    +  + R+ +
Sbjct: 53  LLHLFISAKRIEGCSEKSLKYYKMVIEKMVAEL-DKPIRQISTSDLRTYLANYQKERQSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K         + E ++       + 
Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDYILKSPVRRIHKIKTDKVIKETLSDESLEL-LRDTCDN 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  R   + +  +        K  +   V         L   
Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFHERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++               ++         +    +A +     H  R+  AT + D G
Sbjct: 231 LDSRKDDSSALFVSLAYPYDRLMIGGVETRLREIGKRANLQKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA 312


>gi|328542282|ref|YP_004302391.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 376

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 42/357 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +E  +        R          +   +          +G                TL
Sbjct: 6   KREGKKGPSYRVMVRMKGFPMQVKTFKRLTDAKQWAQDTESGIRKGEVKNVVRTAATKTL 65

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---- 127
           + +I  +RK   +   A +++ +  S+     +  G +    IT   +   +        
Sbjct: 66  QDVIDRFRKEV-FIHRAESTKRAEGSFLAYWEKALGSYALAYITADMVSEKMAELAAAGD 124

Query: 128 --------------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                +  +   +  ++ VLFK+A++  + A +P   V R  + 
Sbjct: 125 GRRKADEDAEADKPKAAPKPKSRKTLKHYRDTLAVLFKYAIQWGWTASSPLDGVNRITKI 184

Query: 168 TEGI-RPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                R  + E+ ++            L     F L +G R S+     +  L     + 
Sbjct: 185 RNERTRYLSDEERKRLLDACKASDNEHLYPVVVFALSTGARKSEILGLTLDDLDLTRDTA 244

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-----------QFSI 271
             +  K G    V +      LL         F+   +                      
Sbjct: 245 ILRDTKNGDTRAVPVVHHLRDLLEDQVETVNRFYDELEPPADTRWLFPRRDGQEPIDIRK 304

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            ++     A + +   H +R  +A+  A  GA+  E+    G +T+     Y   ++
Sbjct: 305 AWENARDAAKINDFRFHDLRHSTASYLAMNGASLVEIAEILGHRTLQMVRRYAHLSE 361


>gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 359

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 94/331 (28%), Gaps = 23/331 (6%)

Query: 13  KERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           K    +GKI +    R+     +             + +       +  + +    + TT
Sbjct: 16  KRVGTNGKISWQARVRRKGFPDM-FKTFRTKVEAQKWAAVTESEMARHVFTDRSLAERTT 74

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           L   +  YR            +  +      +           +  +  ++ V  +K T 
Sbjct: 75  LGDALEVYRDEVTVE--KAGHQEGY-VIKAWLKHPLSKRTLSSLKVRDFQAWVTEKKATV 131

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF---- 182
            P +    +  +  L+        +    NP L +  P       R     +        
Sbjct: 132 GPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRDRRLNVIEHDDGTVRN 191

Query: 183 -------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                      +     R A EF L   +R ++  +   +H+  N   ++     T   V
Sbjct: 192 EAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLNAGMVRLPAAITKTGV 251

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                      +  +      I+     + A      F     +AG++    H +R  +A
Sbjct: 252 SRDVALSPA-GVQVLRTLPRSIDGRVFPLTADALYRAFVRARKRAGLDDLHFHDLRHEAA 310

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           +   + G    E+ +  G KT+   + Y   
Sbjct: 311 SRLREEGLDLMEIASITGHKTLQMLKRYVHV 341


>gi|320353450|ref|YP_004194789.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320121952|gb|ADW17498.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 93/325 (28%), Gaps = 17/325 (5%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
               E         AL     +       +     L    +EY + A   +    +    
Sbjct: 22  GNKKERKCFATKKDALLWEAERPTEPAEQKTLTVCLLDWATEYLRHAE-QNFTGKTFDEK 80

Query: 96  ESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQ 150
              F Q+    G        ++T   ++  ++ +    + ++A +   ++   + W V+ 
Sbjct: 81  RIAFRQLFACPGINPKESANRLTALQVQKALQRQSVSRSGNAANKDRKNLSAAWSWGVKF 140

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             + I+   S           R     D         E  Q +L     L +G R  +  
Sbjct: 141 LDLPIDNPFSKVEKFASERVERYVPTLDDFWKIFHIIEDDQDKLMLYCYLQTGARRDELF 200

Query: 211 RAGVQHLQNNI------FSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQ 262
           R     +          +            + + D  ++ L             +   +Q
Sbjct: 201 RLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSVKDDLVEWLLRHRKKSCDIKEHVFIREQ 260

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           K++      W K    KAGV     HG+R   A+I A       E+       ++   + 
Sbjct: 261 KLSYQYRQHWLKRLCKKAGVKPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATTQR 320

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           Y       +   +    +  + DS+
Sbjct: 321 YIHRL--KKENREVLAALPGLKDSE 343


>gi|301300085|ref|ZP_07206303.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852317|gb|EFK79983.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 373

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/359 (9%), Positives = 97/359 (27%), Gaps = 35/359 (9%)

Query: 17  RHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK       ++  G  +               Y + L     +     + +       
Sbjct: 6   KRGKTYRATVSWYEDGVRKFKSKSGFKTKREAQIYANELENLKARNFISQNSKTP---FP 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
                + ++    S++  +++++++ F+ + +        ++  +  R  +    + H  
Sbjct: 63  EYFWSWFETYKESSVSERTKLTYKNAFNVLKKHLSGIPIEEMDRRLYRKFIAEFGKDHAK 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKEDMQQFKS 184
           S+  +F +      K A+    V  +     +    + +  +        TK+       
Sbjct: 123 STVSKFNSLYHACVKDAMYDGDVTKDFIAGTDIVYNRKKTRKIDYLNIEETKKLTNYLTD 182

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             +     +      + +G R  +      + +  N  +I   K+               
Sbjct: 183 TLNHNFTAKYMILLAIATGARLGEMQALTWKDINFNFHTIDINKSWNETTKKFQPTKNES 242

Query: 233 --ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
               + +    +  L        +  FIN       ++  +   +    + G++K     
Sbjct: 243 SKRIIRVNQNTLDYLQDLKQNNHDMVFINQYNTIPTSSAVNKTLRMCLKELGIDKPSFHF 302

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNSRRISSVV 343
           H +R              + +    G   +      Y+   D            I   +
Sbjct: 303 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKL 361


>gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
 gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 88/300 (29%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
           +T  +E     +    TL  L   + +         ++  +  ++    +++        
Sbjct: 93  ATAVKEAFQGSKDTQMTLLKLFDRHIEEIRARVGIDVSHRTLPNYLYTRNRLADFVSSRF 152

Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D  + ++  + IR   E     +     +   +L  ++ + + A ++ Y        
Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGYSDKYYFEH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK K    R  +KED ++ +     G +P     R  F F  Y+G    D     + 
Sbjct: 213 YKLPKLKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITLD 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIW 272
           +L  +       K             +KLL                     +        
Sbjct: 273 NLSRDDNGALWLKY--RRGKNGQLSRVKLLPEAVALIEKYRDDTRPTLFPVIPYQALKWC 330

Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +   K G+      H  R   +T+   + G     +    G   +   + Y +   + 
Sbjct: 331 LTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKK 390


>gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 87/284 (30%), Gaps = 21/284 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           ++  + +       +  +   ++       R          +  +I++  +   +   K 
Sbjct: 6   VVENFLRYLESIDRSKETIKGYKKELGYFGRFLEKKYGFEKEMEQISSVDLEDYMYYLKK 65

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++  + +   R L+K++ ++E    N  + +E  K K       ++E+       
Sbjct: 66  SGKKSATRSRVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEFIL-LIQ 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK 243
               S  + A + + Y+GLR S++    ++++     I    + K      + + +    
Sbjct: 125 KINSSIVKAAVQTIFYTGLRVSEALNLTMENVKLDEKIIYTISGKGDKDRIIPISNKLYY 184

Query: 244 LLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
           +L            +N           +    +             K  SAH +R   A+
Sbjct: 185 ILDDYVKNIRPDVESNKFFCTKKTGSLSPQYINRMLHIAKDSLNWEKNISAHILRHSFAS 244

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                 A    +    G   +     Y      +R   +    +
Sbjct: 245 NLILQNAPLPAVQKLLGHSDLRVTSRYIH--QDLRQLEEAVNLL 286


>gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158]
          Length = 346

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 92/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS-----FESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +  +     +         + G +
Sbjct: 15  DDIYRQPAGPAHDPKSLYALLLRFVKWRRERNWSETTLKTQTHHGYRFIC--WAAERGLY 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               IT   +                  T  +    L  ++V F W  +Q  +  NP   
Sbjct: 73  HAADITRPVLERYQRWLYQYRKTNGEALTSRTQRTTLQPLQVWFSWMAKQGLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEEVLNLCDLSTLQGMRDRALLELLWSTGIRRGEVARLETY 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           + +   K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K S H  R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + R    +  
Sbjct: 313 YTQVSIRALQAVHA 326


>gi|308068307|ref|YP_003869912.1| Integrase [Paenibacillus polymyxa E681]
 gi|305857586|gb|ADM69374.1| Integrase [Paenibacillus polymyxa E681]
          Length = 375

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 119/376 (31%), Gaps = 47/376 (12%)

Query: 9   PFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           PFV ++  +   +  YY   G  R+IR             M  L      +EYI   RK 
Sbjct: 4   PFVNEKTKKWDFVFGYYDETGKRRQIRRKGFKTKREANDKMIELQNDVKNKEYI---RKD 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TTL   +  +  +         +  + + YF   I  K G    +       ++ V   
Sbjct: 61  NTTLNEFMDYWLDNIRVHECGETTLYNNKLYFKNHIKPKLGKIKLQNFDLLKCQNFVNEL 120

Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  ++  +  T ++ +F  A+   ++  NP   V  PKR  + +  WT E +  F 
Sbjct: 121 YKKNFARNTIDRITTMVKKVFDKAIEYGFIKENPMRKVTLPKRVKKEMSIWTLEQVNHFL 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
               E  +    +   L +G+R  +      + +     +I  ++T              
Sbjct: 181 QCTKED-RYHCVYGLALLAGMRQGEILGLRWKDIDFKSKTITIKQTLAHYGTRIKSGAKT 239

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------------ATQF 269
                 + +P+  + +L       E + +   ++  +                       
Sbjct: 240 TAGERKISIPNQLIAILEEQRRLHEVYKVKWKREFGDAFIDMDIVIFNLKNGKTVFPANL 299

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           S  +K     A +     H +R   AT+  +       +    G   +    +TY+    
Sbjct: 300 SKAYKKDVISAKLPHIRFHDMRHTHATMLLEKKMNVKVISERLGHSKISVTLDTYSHVLP 359

Query: 328 RIRLGIKNSRRISSVV 343
              +  + +  +  ++
Sbjct: 360 S--MQQEVADELEQMI 373


>gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110]
 gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110]
          Length = 290

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 84/286 (29%), Gaps = 24/286 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130
           L            L   ++ ++      +            T + +R        R  +P
Sbjct: 11  LRQRLLDDMRMRKLGPQTQSAYVRAVRYLASFL-QRSPDTATAEDLRRFQLHLVDRGVSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    +T ++  F   +R+  +       +             ++++  +     +   
Sbjct: 70  ITLNATITGLKFFFDVTLRRGEL----VERMSYVHVPQTLPVVLSRDEAAR-LIAAATNP 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           +   A      +GLR S+     V  + +   +++    K        L    ++ L   
Sbjct: 125 KYHTALSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRKDRYAMLSPVLLERLRAW 184

Query: 249 PIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                           F   N    + A Q +      A  A ++K  + H +R   AT 
Sbjct: 185 WRYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAKIDKRVTMHTLRHSFATH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
             +       +    G K ++    YT  A + +R  +    ++S+
Sbjct: 245 LLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREVVSPLEKLSA 290


>gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 419

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 94/354 (26%), Gaps = 43/354 (12%)

Query: 24  YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y   G  RR+ +                     +           S R+ P   K LI  
Sbjct: 49  YRHAGRQRRMTIGRWPEWSTTSARDRAKELRREIDAGGDPLGQKESGREAPR-FKDLIER 107

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---------- 126
           Y +  H   L+  +    +S   ++   +  +    +IT   +   +             
Sbjct: 108 YIE-VHLPHLSPTNASDQKSMLAKLVAPEWSNRLVTEITPYDVEKLLNKVAAGRARPSKA 166

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                       K TP  A +    +R +F +AV   +   NP  S  R + +    R  
Sbjct: 167 KPNNRARKLQGAKPTPVRANRTGEVLRKMFTYAVGWGWREDNPASSFRR-RIENARERFL 225

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKT 229
           + E++ +           R A      + +G R  +  +A   H      S         
Sbjct: 226 SHEEIHKLAEALEAAEDRRAADIIRLCMLTGARVGEVRQAQFIHFNLEHLSWSKPASMTK 285

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-K 284
              +           +                          +   ++     + G+   
Sbjct: 286 QRKVHRLPISDEAAAIVRQRQLLVPRGCQLLFPGDVPGQPVKEIRRFWSNIQKQIGIPDV 345

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             H +R   A++    GA+   +    G   +   + Y    D  +R G+    
Sbjct: 346 RIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVA 399


>gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]
 gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193]
          Length = 419

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 99/360 (27%), Gaps = 41/360 (11%)

Query: 24  YFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREY---INSPRKKPTTLKWLISEY 78
           Y   G  RR +L       +T        +     +      +    ++   +  +I  Y
Sbjct: 49  YRINGRQRRYKLGAWPEWTTTAARERAKEIRRQIDEGIDPLSVRETEREAPKVSDMIDRY 108

Query: 79  RKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVES------------ 125
            +      LA  +     S   +++  + G+    +IT + +   +              
Sbjct: 109 IEEH-LPRLAPRNASDQISMLRKMVEPEWGNRLVTEITKQDVERFLNKVAEGRPRPSKLK 167

Query: 126 ----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      K TP  A +    +R +F  A+  E+   NP          +   R  +
Sbjct: 168 PNNRARKLQGWKPTPIRANRVGQLLRKMFNLAISWEWREDNPAAGFRMRIENSRE-RFLS 226

Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTG 230
            E++ +  +        R A      + +G R  +   A  +H   +  S          
Sbjct: 227 HEELARLATALDHAEDQRAAGIIRMCMLTGARVGEVRTARFEHFNLDYGSWAKPADTTKQ 286

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-KS 285
             +        +  +                          +   +++    +A +    
Sbjct: 287 RKVHRIPISADVATIVRQRKLVVPKGSPWLFPGDTPGQPVKEIRRFWRNMQREAEIPDVR 346

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
            H +R   A++    GA+   +    G   +   + Y    D  +R G+    +      
Sbjct: 347 IHDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMDSPLRAGVDAVAQAFRPRP 406


>gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
 gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           182-1]
          Length = 356

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 304

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 81/289 (28%), Gaps = 35/289 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRK 127
            +  +  Y+       ++ ++  ++ S               +IT      I   +   K
Sbjct: 3   FEPFLEFYKN---IKKVSDDTLAAYRSDLKHFGLFLATEHVDRITQIDHALIAKFITYMK 59

Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +            ++  + L ++   F +        ++  +     + K        +
Sbjct: 60  ISGKGKGGKVGLSDATIARRLAAVSSFFDYTRATTGRKLHNPIEDFSNRWKRNNKPKPVE 119

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           E + +         + R+     L +GLR  +  +     +                   
Sbjct: 120 EVVLEKLLSAITSPRDRVLINLFLATGLRLGEMEQLNRDTIVIEQHKGNGPNECFVIGTG 179

Query: 232 ------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                       +++ +    + + +          FI+  KQ+M+              
Sbjct: 180 EVEGKGGKIRTFMVSQQALIPYARYVNGRKDDHPALFISERKQRMSERAMQERLAHWCKV 239

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AGV+ +  H +R    T   +AG    +L    G  +V     Y K  D
Sbjct: 240 AGVSHTNVHRLRHTYGTRLVNAGMDILQLKELMGHSSVATTLNYAKIMD 288


>gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 103/331 (31%), Gaps = 33/331 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRKKPTTLKWLISE----Y 78
            G  R I+L    E +   A    L       +       +   +  TL     +    +
Sbjct: 23  DGKMRVIKLGRFPEISTERARALCLEHKQRISQGATVDDLTKPVRSMTLDQFYRDHFLPW 82

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135
            ++  +   + N    + S +  I    G      I    +R     ++   + P S  +
Sbjct: 83  YQT--YRRNSTNIVQLYRSTY-HIR--YGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNR 137

Query: 136 FLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQ 191
            +  +R + + A       +  +               R  ++E+  + ++       + 
Sbjct: 138 TVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHERFLSREEAHRLQAVLQRRGATP 197

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP 249
             LA  FLLY+G R S+   A   H+       +    K G   TV L D  + +L    
Sbjct: 198 VNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQAR 257

Query: 250 IGKETFFINNDKQKMN----------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             ++  F    +                     +K    +A + +   H +R   A+   
Sbjct: 258 AYQQRHFGKQARSVSTVFANPQTLQPYHNIWETWKRVRAEADLTDVRLHDLRHSYASTLI 317

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +AG + +E+    G   +   + Y   A   
Sbjct: 318 NAGVSIYEVQKLLGHTNITTTQRYAHLASER 348


>gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_10532 [Mycobacterium kansasii ATCC
           12478]
          Length = 373

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 100/360 (27%), Gaps = 33/360 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINSPRKKPTT 70
            +   G+    F    G  I  P    +                       +  +    T
Sbjct: 11  RKLPSGRYQVRFTDPDGNYITAPKTFAARIDAEAWLTDRRREIDAKLWNPASVAKPDKIT 70

Query: 71  LKWLISEYRKSAHW--GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE-SR 126
                S +          +   +R  +++   D +I   G      IT K +R     + 
Sbjct: 71  FGAYASAWLAGRQVAGRPIKQRTREHYQAILDDHLIETFGTRQLAAITPKAVREWYAVTL 130

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P+      + +R +   AV  E +  NPC  V    R     +       +      
Sbjct: 131 TNRPTMRSHAYSLLRTIMGSAVNDELIDTNPCRIVGA-GRAKRVHKIRPASVDELATLTN 189

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
           +   + RL      +  LR  ++       +  +   I+ ++                  
Sbjct: 190 AMPERLRLMVTLASWCALRFGETVELRRSDIDLSDEMIRVRRAAVRTGGGSFQVTTPKSD 249

Query: 233 -------ITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAG-V 282
                  I   +       L+     K     F   +   +  +  +  +      A   
Sbjct: 250 AGVRDVAIPPHIIPQIEDHLSKYVGSKRDSLLFAAQNGGHLQPSTLTRHWYKARKAANRD 309

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +   H +R   A ++A  GA+  ELMA  G  T   A  Y   A  R R       ++++
Sbjct: 310 DLRWHDLRHSGAVLAAATGASLAELMARLGHSTPQAAMRYQHAAQGRDREIAALLSKLAA 369


>gi|317152205|ref|YP_004120253.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942456|gb|ADU61507.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 340

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 102/334 (30%), Gaps = 13/334 (3%)

Query: 15  RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +T+ G+    Y  +  +  + R  +   +    A           +      R+    L 
Sbjct: 5   KTQDGRFYVQYRVQYRNSPK-REYFGKGTEAKRAARERDAEIKLMKTRNEDVRESHIYLD 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TP 130
            L   Y +            I   +  ++  +         K+  +         K  + 
Sbjct: 64  ELAKAYIEHEKVKGRDRKFLIEVRNRLNKSFLPALNHVPVHKLKARDFDKLALEYKDLSN 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           SS  +++T + V+F + V  E++  NP  +  +   K E  R                  
Sbjct: 124 SSFNRYITYLNVIFNFGVEFEHIEKNPMTNWRKRVMKREKPRDLEITIDDVRAIMAHAAP 183

Query: 191 QPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             + A + +L +G R   S   R     +  +   ++ + + T  +        + LA  
Sbjct: 184 HVQKAIKLILSTGCRPGKSELLRIKYSDVDFDAKRVRIRGSKTARSDRYVPLRDEFLAEI 243

Query: 249 PIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304
              ++    +   +        F   F A   ++G+ K    + +R F A+      A  
Sbjct: 244 RGWQDAAESDYIVEFEGKQLNGFKKGFNAAVRRSGIGKKVVPYHLRHFFASSLLANKADI 303

Query: 305 HELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
             + +  G    D   + Y     D  +  ++  
Sbjct: 304 KAVASLMGHAGPDMLFKVYYHLIGDSEKEAVEKL 337


>gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591]
 gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 369

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 94/334 (28%), Gaps = 36/334 (10%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
              AL            P   P +L  L+  +       + +  +  +   +  + I  +
Sbjct: 7   RADALLTVDEVYRKPIGPASDPKSLYALLLRFVVWRRERNWSETTLKTQTHHQYRFILWA 66

Query: 107 GDFDY---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVA 154
            +      R IT   +                  +  +    L  + V F W  R   + 
Sbjct: 67  AERGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLL 126

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDS 209
            +P   +  P+ +    R        +      +     G + R   E L  +G+R  + 
Sbjct: 127 ADPASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEV 186

Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--- 264
               V  +    +I +I   K      + +    ++ L           + N        
Sbjct: 187 AVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYLQAVRPQLLVNPHCPALFV 246

Query: 265 --------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                        +         +G+ K  S H  R   AT   + GA    + A  G  
Sbjct: 247 ALDGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHA 306

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +V+  + YT+ + R    +      S+     DP
Sbjct: 307 SVESTQIYTQVSIRALQAVHA----STHPAERDP 336


>gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 420

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 97/371 (26%), Gaps = 47/371 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIP--------------- 45
            ++ P  V + +  +G +  Y   + KG  +   L         P               
Sbjct: 40  KVKEPVRVRQRKLANGNMSLYLDVYVKGVRKVESLGLYLVPELTPLDRQQNIHARQVADK 99

Query: 46  -AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 L          N  ++   TL   + EY +       + ++         +I  
Sbjct: 100 IKAERILALQNHGVRQWNKVKRSCITLVDFLKEYEQEKF--GFSASTLKGRRDLRGKIET 157

Query: 105 KS-----GDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWA 147
                   D     +     R  ++  ++            +  +A      +      A
Sbjct: 158 YLKETNRPDIVLANVDVDFCRGFIDFLRYAKNGVRKDGSVISNGAAHHHQAVLNGALNKA 217

Query: 148 VRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           VR   ++ NP  S+   E+ +         T E+M+   +        + AF F  ++GL
Sbjct: 218 VRDGILSANPLKSISSKEKYQPSESMREYLTLEEMKVVMAASCPHEDVKRAFLFSCFTGL 277

Query: 205 RCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           R  D        +             K      +       + +      +         
Sbjct: 278 RLGDVRSLTWGKIVKAPDGKTLFVRTKMEKTQKIVNVPLSKEAIDCLNPKENNEEPIFML 337

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +       +     A + K    H  R   AT+    GA  +      G   V+  
Sbjct: 338 PAGTSN-IERNIEKWMQDAKITKHITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTT 396

Query: 320 ETYTKGADRIR 330
             Y K  D+ +
Sbjct: 397 SIYAKIVDKKK 407


>gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01]
 gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01]
          Length = 342

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 98/342 (28%), Gaps = 32/342 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+ +   +   G+R R            Y   +T +       N   +    L  
Sbjct: 4   KKQPDGRWLADVQPIRGQRFR-KLFKTKAEALRYEQYITANKAADPAWNPKAQDRRRLSE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTP 130
           L+  +    H   L        ++  D +  +  D         T  H R        TP
Sbjct: 63  LVGLWFD-LHGHMLKDG--ERRKAKLDALCVRLRDPIAMKLDPATYAHDRRLRAEAGITP 119

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +    L  +R +F        +   NP   ++  + +   +   T+E +    +   EG
Sbjct: 120 KTLNNELGYIRAVFNELRGLGQIDYANPLELMKLYRIEERELSWLTQEQIADLLTSIREG 179

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                        L +G R S++       L+N   +    K+  + TV +       + 
Sbjct: 180 CDNPHVEPIVLLCLATGARWSEAECLTPSRLRNGAVTYSKTKSSKVRTVPIQPELEAFIR 239

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302
                   F                 F+   +++G+     +++H +R   A+     G 
Sbjct: 240 DHWKRHGQFTGAITS-----------FRRALSRSGIVLPKGQASHALRHTFASHFMQKGG 288

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
               L    G  ++     Y        L  ++      +  
Sbjct: 289 NILTLQKILGHSSLAMTMRYAH------LAPEHLAEAVKLNP 324


>gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168]
          Length = 398

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 77/307 (25%), Gaps = 58/307 (18%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130
           I++Y         +  +  ++  +     ++        ++   I       V  +  + 
Sbjct: 85  ITKYVTLLEAKHYSRRTVQAYAKWLIAFGKRFASIPSALLSQTEINLFLTELVTEKNVSA 144

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+  Q L ++   F++    E   +   +  +          P      +    F     
Sbjct: 145 STQNQALAALLFYFRYIKGTEPCNLASVIRAK-----KTVHIPVVFSKDEVRAIFDQLSD 199

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248
           +  L  + L  +G+R S+     +Q +      I  +  K        LP    K +   
Sbjct: 200 EKLLIAQLLYGTGMRLSECLCLRIQDIDFAHNMIIIRNGKGAKDRRTMLPHILEKKIRAH 259

Query: 249 ----------------------------------PIGKETFFINNDKQKMNATQFSIW-- 272
                                                 +  F   ++ K   T       
Sbjct: 260 IVSVKQLHQADIADGWGVVTLPFALRKKYSGASADFAWQWVFPQKNRWKNTDTGMQGRYH 319

Query: 273 ---------FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                     +     AG+ K    H  R   AT   + G     +    G   V     
Sbjct: 320 IDASIMERAVQKAVRDAGIYKRGNCHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMI 379

Query: 322 YTKGADR 328
           YT   ++
Sbjct: 380 YTHVLNK 386


>gi|289676143|ref|ZP_06497033.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 354

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 111/354 (31%), Gaps = 31/354 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK     +             +         +  YI     +  TL+  
Sbjct: 6   KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMTLENA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y +          ++ +  +   Q+I+  G +    ++++ I +  ++R        
Sbjct: 65  LQRYLREVSPTK-KPTTQKAEATKAQQLIKHLGKYSLAALSSEVIANYRDTRLGSLTNRG 123

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + ++    L  +  LF  A+++  +    NP L++ +P       R  T ++ ++  
Sbjct: 124 QPTSNNTVRLELALLSHLFTVAIQEWGLGLTYNPVLNIRKPSPGEGRNRRLTADEERRLL 183

Query: 184 SFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              ++ S P L +     L +G+R S+        +           T       +P   
Sbjct: 184 KEVNKHSNPMLGWIVSIALETGMRSSEITGLRRHQVDVKKRVAHLLVTKNDSARTVPLSK 243

Query: 242 MKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
           +            +         F       K     F+  +    +K G+     H +R
Sbjct: 244 LAAATFQAALQNPVRPIDCDLIFFGEPGKDGKRRPYAFTKIWGLLKSKLGMPDFRFHDLR 303

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             + +   + G +  E+ +  G K++   + YT              R+ S+  
Sbjct: 304 HEAVSRLVEGGLSDQEVSSISGHKSMQMLKRYTHL-----RAEDLVVRLDSLKA 352


>gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 311

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 89/296 (30%), Gaps = 17/296 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   T + ++  Y  +     LA  +   +  +  +      +        + +   + S
Sbjct: 10  KTEETWQQVVERYVLTRKADGLAPRTVKDYRYHLTRFFTAYPEGLNPDKAKRCVLEYM-S 68

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182
            + +P      L  +R  F+W V +  +  NPC  +   K + +  +             
Sbjct: 69  LERSPGYHNMVLKYLRCFFRWTVNEGILYSNPCSGIRSRKAQPKIAQHSPDVVKALLALP 128

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELP 238
                 G +        L +G+R  ++    V+ +      +  +          T+ + 
Sbjct: 129 DQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKTRVQRTLPIS 188

Query: 239 DGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           D   + +                F + D Q +    +    K    K G + + + +R  
Sbjct: 189 DQTAQAIMKLVSIRPKEWRNAPLFCSRDGQPLRVNSWYHTVKGYGEKIGADITPYSLRHL 248

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            A            L    G   +D  + Y   A      ++    ++S V++  P
Sbjct: 249 FALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQ---SDLEEQHELASPVNALFP 301


>gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus]
 gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus]
          Length = 308

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 88/289 (30%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T    I+ Y  +      +  +  +++    Q     G    R+   + + +  +  K +
Sbjct: 24  TFDRFIN-YLDA------SPKTVETYKKALRQFFNYLGLHGIRQPQREDVLAFRDDLKAS 76

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P++   ++T+ R+ FKW  ++                K       T    ++  +  
Sbjct: 77  GLKPTTVQNYITATRIFFKWTEQEGLYPNIAEHVKGAKLDKNHKKDYLTSRQAKEVLANI 136

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
                EG +       ++  GLR  +  RA V  L+    +      G     +      
Sbjct: 137 KTDTEEGLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKI 196

Query: 240 ------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
                           L         +   N+  +++     S   K     AG +    
Sbjct: 197 SAPVEKAIRTYLKARDLTTEEQPLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARL 256

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +AH +R  + T++  AG    E+        ++    Y    D+ +  +
Sbjct: 257 TAHSLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAKTAV 305


>gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126
             EY K+  +     N+  S+    +  +R   D         +  +      +S +  +
Sbjct: 5   FEEYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRK 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
            H PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ 
Sbjct: 62  NHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  ++     E LL +G+R S++    ++ ++ +    K +  G   +        
Sbjct: 122 TVHQFGKTRDVALVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNS 181

Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                     +    +            K+         +  A  AG+    H +R F A
Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
               D G   +++    G + ++    Y K
Sbjct: 242 QTLIDKGLNIYDVQQLLGHQRIETTLRYKK 271


>gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 414

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 22/272 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128
            +S      A  +   +++     +          D D RKI    I         +RK 
Sbjct: 120 IQSLIGQEYAPGTLERYKTSLKHTVDFLQTRHTIQDIDIRKIDHAFIMDYEFYLRNTRKC 179

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++A++++ + R +    +   ++  +P ++ +  K +       T+E++    S    
Sbjct: 180 NNNTAVKYIKNFRKIINICIANGWLDRDPFVNYKS-KIREVERSYLTQEEVHIIYSRTFA 238

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--- 242
             +    R  F F  ++GL   D       H+   I   K   T    T       +   
Sbjct: 239 TDRLNIVRDIFVFSCFTGLAYIDVRNLTPFHINIGIDGGKWIFTHRQKTETPSRIPLLPI 298

Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS- 297
             +++       +          ++  + + + K  A   G+ K  + H  R   AT   
Sbjct: 299 ALEIIRKYEDHPQCSNEGTLLPILSNQKMNAYLKEIADICGIRKELTFHIARHTFATTIT 358

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     +    G K +   + Y K  D+ 
Sbjct: 359 LSNGVPIESVSKMLGHKNLRTTQHYAKILDQK 390


>gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 376

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 95/334 (28%), Gaps = 50/334 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           GRR  L    +                 R  I   + +  T + L + Y  +     LA 
Sbjct: 33  GRRFILSRTGKRGKAKL----------GRTSIEVTQIEIYTFQELFNIYMFAKEAEGLAK 82

Query: 90  NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSG--------------------VES 125
            +  + + YF      +  +  D     + T  IR                       +S
Sbjct: 83  RTLENKKGYFLVFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHCIKEKYKS 142

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
              + S     +  MR  + + V +EYV +NP   ++  K   + I   + + ++     
Sbjct: 143 IGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALSVDQLKTLLKQ 202

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL 237
                  G +  +    L  +G+R S++     + L      I       K      V +
Sbjct: 203 PNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKNRQTRYVPI 262

Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289
                KLL      +        F       ++  +F    K     +G+     S H  
Sbjct: 263 SQKTSKLLRELLVEIEEFDTLHIFATVYGNAIDPARFRQRLKMYGHNSGIKGVRVSPHTF 322

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   A            L    G  +++    Y 
Sbjct: 323 RHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYI 356


>gi|148988039|ref|ZP_01819502.1| site-specific recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
 gi|147926503|gb|EDK77576.1| site-specific recombinase, phage integrase family protein
           [Streptococcus pneumoniae SP6-BS73]
          Length = 384

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 107/366 (29%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K +T+ G I+YY          G  +R              Y + L            
Sbjct: 3   IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61

Query: 64  PRKKPTTLKWLISEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 T K L  E+ K+       + +  ++  +      I+   G     +I+    +
Sbjct: 62  KPNPKVTYKELYQEWFKAYVGTVEETTSSQTKNIYRI---HILSIFGGKFIDQISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F +A+   Y+  NP  +V  PK K       W+ E++
Sbjct: 119 NFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
             F     E    +    F L  +SGLR  +        +  +   +   K+        
Sbjct: 179 HHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWDDINFDSNLLNIDKSLGRIDGKA 238

Query: 233 -----------ITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
                       T+ L D  + ++                                N+  
Sbjct: 239 IEKSTKNESSVRTIYLDDETIDIVKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDKI 298

Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +        K  +     HG R   AT+ ++ G          G  +     
Sbjct: 299 EPLHADYINNVLNRIIKKHKLKPIIPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           + YT  
Sbjct: 359 DVYTHT 364


>gi|330429397|gb|AEC20731.1| site-specific recombinase, phage integrase family [Pusillimonas sp.
           T7-7]
          Length = 362

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 103/361 (28%), Gaps = 34/361 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +   ++  
Sbjct: 6   KTPSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGMYIQRAPAERMIVEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y +         +++I        +I+  G +    ++   +    ++R        
Sbjct: 65  LKRYLREVTPTK-RESTQIGEHKKAQALIKHLGKYSLAALSADIVAQYRDARLAGDEDEN 123

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + ++    L  +  LF  A+++  +    NP  ++ RP       R  T  + +
Sbjct: 124 GKRVPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGAGRNRRLTPTENK 183

Query: 181 QFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  +     S P         L +G+R S+     +  +      ++ + T       +P
Sbjct: 184 RLLTAVDAYSNPMFSWIVRVALETGMRLSEIAGLRLGQVDMQKRVVRLEHTKNSSPRTVP 243

Query: 239 DGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                           L         F             F   +      AG+ +   H
Sbjct: 244 LTKAATSVFQAALDNPLRPPETDLVFFGEPGKDGMRRPYLFDKAWSDAKKAAGLVDFRFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R  + +   +AG +  E+ A  G K++   + YT              R+  +   + 
Sbjct: 304 DLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHL-----RAEDLVGRLDELERRER 358

Query: 348 P 348
           P
Sbjct: 359 P 359


>gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 293

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127
             +     +  + +  + +S+     +          + D+  +    +R  V +     
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  +      T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
            + + +    +          FF+  + ++M   +  +  K   +K  +   +S H +R 
Sbjct: 184 RRAMFVYLKIRNEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|254452044|ref|ZP_05065481.1| putative phage-related integrase [Octadecabacter antarcticus 238]
 gi|198266450|gb|EDY90720.1| putative phage-related integrase [Octadecabacter antarcticus 238]
          Length = 385

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 119/348 (34%), Gaps = 19/348 (5%)

Query: 9   PFVTKERTRHGKIIYYF-RKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             +       G   ++  R+ +GR  R       + T   A + A        + +   +
Sbjct: 32  RGLGLRVATSGTKSWFMMRRFNGRMLRTTFGRYPDLTLANARLKAPNVLADMSDGLTQGQ 91

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K    K ++ E+ K     + +V+      + +   +   G      IT + +   ++ 
Sbjct: 92  RKTDLFKVVLDEWLKKDQAKNKSVHQVRV--AMYKHALPAFGPMPVASITKRDVNRLIDK 149

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +P +A + L   +  F W   ++ + ++P  ++  P ++    R  T E+++ F 
Sbjct: 150 IVDAGSPVAANRVLAFTKRFFSWCKERDILELSPAEAIRPPSKEKTRDRVLTLEEIKGFW 209

Query: 184 SFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELP 238
           +     G      F+ LL +G R  +  +A    +           +  K G    ++L 
Sbjct: 210 AACDQMGYPWGPIFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLS 269

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
           D  + ++   P  +    I         + FS   K     +GV +   H +R+  AT S
Sbjct: 270 DQAINIIQALPKVEGQDLIFTTNGTTAVSGFSKVKKRLDIISGVADWRFHDLRRSFATHS 329

Query: 298 ADA-GATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKNSRRI 339
            +  G +           T      A  Y  G   +  R  ++     
Sbjct: 330 TERLGISPVVADKILNHVTGQVRGVAAIYQHGEYLEERRASLQKWGNF 377


>gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
 gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419]
          Length = 388

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 20/326 (6%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVN 90
            RLP      F P    A      +              K L+  +    +  W  LA +
Sbjct: 64  KRLPDLKSKEFWPEATKAHEAFIRRGRQGIKD------FKALVEAFQSETNPFWTKLAAS 117

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           ++  + +  D I    GD     +TT   +  +++   TP+ A QF   +  L  W   +
Sbjct: 118 TQRGYRTSGDIIKETWGDDLPVDLTTVDAQDAIDALGETPAKANQFRAFLSRLMAWGASR 177

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y   N     E+      G       +              ++      ++G R  D  
Sbjct: 178 GYCKTNVVEMTEKI---PGGEPWVPWPNWAFEILLEHAPFHMQMIAMSAFFTGQRQGDVL 234

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQ 268
                    N  +++ QKTG  + + +   + K +   P                 +   
Sbjct: 235 AMTKPKAGENTIAVRAQKTGNTVWIPIHFAYRKWIDRVPTSDSVMLHAGARATSYKSPDG 294

Query: 269 FSIWFKAK-ATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F   ++   A  A           HG+RK +     + G T +++ A     +    + Y
Sbjct: 295 FRTEWQKLMAKDAFKPFRENRIVFHGLRKNAVINLLEVGCTENQVGAICN-MSAQMVQHY 353

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
            +      L     + + +     +P
Sbjct: 354 GREVVLRSLAKDAMKLMEARWSEIEP 379


>gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678]
          Length = 318

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 31/322 (9%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
               G      R    +G+R R       T    Y   +      ++++++P  +   L 
Sbjct: 4   TKVDGGYRVDIRPSGRNGKRYR-RTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLL- 61

Query: 73  WLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            LI  +    H  +L    N+R +  +      +  G+    ++ T    +    R  K 
Sbjct: 62  ELIDLWF-HFHGKNLKEGVNTRKNLITT----CKLMGNPQSHQVNTNFYLNYRARRLEKI 116

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP +A   LT ++ ++   +     A    L    P +     + +  +           
Sbjct: 117 TPKTANLELTRLQGVYSVLIAAGEYAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLS 176

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G    L  +  L +G R S++       L ++  +    K G   T+ +   F   L   
Sbjct: 177 GEML-LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNG 235

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATA 304
                    +              F A    +G+     +++H +R   A+     G   
Sbjct: 236 NGRLFADCYHQ-------------FLAVLKSSGIVLPKGQASHVLRHTFASHFVMNGGNI 282

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G  ++     Y   A
Sbjct: 283 LTLQKILGHGSIQMTMRYAHLA 304


>gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
 gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 87/276 (31%), Gaps = 22/276 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129
              Y ++     ++  +  ++     ++ +   + +   ++ +H     I + +  +  +
Sbjct: 16  FERYLRTE--RQVSAYTVRNYLFELKRVEKLFSETE-SWLSQQHDSLQAILAKLHRKGLS 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    L+S++  +++ +R++ + INP +S+  PK+     +    + +       +  
Sbjct: 73  PRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLPKNMDVDSVSHLLDIDAND 132

Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL 245
               + +   E    SGLR  +        +Q +        K      V +    +  +
Sbjct: 133 PLSFRDKAIMELFYSSGLRLGELAALNAADIQFSEAQVKVLGKGSKERIVPIGKLALAAI 192

Query: 246 AMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKAT--KAGVNKSAHGVRKFSATI 296
                 K       D   +                         G+    H +R   AT 
Sbjct: 193 TQWLEIKRDIACEGDALFVTAKGKRLAHRSIQARLAKWGQEQAIGMKVHPHKLRHSFATH 252

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             ++ A    +    G   +   + YT   D   L 
Sbjct: 253 MLESSADLRAVQELLGHANLSTTQVYT-SLDFQHLA 287


>gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 88/285 (30%), Gaps = 19/285 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----------GV 123
            +  ++        + N   ++  + +      G+  +  +T  + +             
Sbjct: 73  FLEYFKNLMIERGSSQNWATAYMHFHNY---THGECRFCDLTVPYCQGFLDYLLSDACMH 129

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++   ++A   LT ++ +   A     +  N    + R K      +  TKE++ Q  
Sbjct: 130 NGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQLS 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +    R A  F   +GLR SD  R   +++             T          + 
Sbjct: 190 QTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITK--KTSTAAILP 247

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           +                 + +  +  +++ K     +G+ K  + H  R   AT+    G
Sbjct: 248 ISEEALQLCGERGTGQVFKNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFATLQLAEG 307

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              + +        +   + Y    D ++     + RIS  + + 
Sbjct: 308 TDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERISLKMPTK 350


>gi|197302682|ref|ZP_03167736.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC
           29176]
 gi|197298264|gb|EDY32810.1| hypothetical protein RUMLAC_01412 [Ruminococcus lactaris ATCC
           29176]
          Length = 370

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 96/343 (27%), Gaps = 41/343 (11%)

Query: 14  ERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +  +G      R     G  ++              +          +  +        
Sbjct: 4   YKNNNGTWYVMIRYQDWTGARKQKCKRGFATRKEAADW--------ELQFKLQKKASLDM 55

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++   + Y +     SL  ++ ++ E+    +I+   G     +IT K +       + 
Sbjct: 56  TMESFCALYEEDVRP-SLKQSTWLTKENIIQKKILPYLGQRKVSEITAKDVMDWHNQMRK 114

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED 178
                    +P+        +  +F  AV+   ++ NP         +       WTKE+
Sbjct: 115 LKTKTGKLLSPTYLKTIHGQLSTIFNHAVKYYDLSTNPARKAGALGTEEGKEMLFWTKEE 174

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
            + F     +      AF+ L + G+R  +              +++  K+         
Sbjct: 175 YKLFAEEMMDKPLSYYAFQLLYWCGIRSGELLALTPADFNFKKKTLRINKSYQRLQGKDV 234

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                      TV +P      +        +   ++    +     +   +      GV
Sbjct: 235 ITTPKTKNSIRTVVMPQFLCDEMQDCLKLYYSLKPDDRIFPVTKYYLNHEMERGCKACGV 294

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            K   H +R    ++  + G TA  +    G         Y  
Sbjct: 295 KKIRVHDLRHSHVSLLINMGYTALAIGKRVGHSAEKITYRYAH 337


>gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 333

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 11/255 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135
           Y        L+  +  +++ +  ++           I+T  +R  +    +    S+   
Sbjct: 65  YLACKKLEGLSSKTLYNYKLFLIKLNMYF-TKPVSTISTMDLRMFLAVLGKGKQASTTNG 123

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           ++T ++  F W   +EY+  NP   +++ K     ++ +  E++++ +       Q  L 
Sbjct: 124 YITYLKNFFGWLQNEEYILKNPAAKLKQTKVPKVILQGYKAENLEKLREACVTEKQKCLF 183

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPD----GFMKLLAMTPI 250
                 +  R S+     ++ +       I T K      V             +     
Sbjct: 184 ELLD-STACRISEIDEIKIEDINWQEQSIIVTGKGNKQRVVYFSTKAKLHLKAYITGREE 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
           G          Q +      +       KAGV      H  R+  AT   ++G T   + 
Sbjct: 243 GHVFVSDKAPHQHIGVRALQLIVAKIKEKAGVTEKVHCHKFRRTQATYLLNSGMTIQGVQ 302

Query: 309 ATYGWKTVDQAETYT 323
              G  + D  + Y 
Sbjct: 303 KILGHTSPDVTQRYA 317


>gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
 gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17]
          Length = 303

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 71/274 (25%), Gaps = 26/274 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            + L   Y         +  +   +     Q+          +++T  ++          
Sbjct: 9   FQALHQRYLTELTLRGKSPKTIDLYTRCLRQVCDYFETCP-DQLSTDQLQQYFMHLVEHR 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S       +++  +++ + + +  +    + +    +             +     + 
Sbjct: 68  SWSLVKIARNALQSFYQYVLGKPWEYVPIVKAPKVQTLQDVL-----SLKEVERLISRTR 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               ++ F      GLR S+S    +  +        ++  K      V LP   +K L 
Sbjct: 123 KLSYQVYFLTTYSLGLRLSESLNLTIADVDSHLMRVHVRCGKGKKDRFVPLPLMTLKALR 182

Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNKS--AHGVR 290
                     +                    M         K  A   G+ K    H + 
Sbjct: 183 RYWATHRHPDLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSMG 242

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   + G     + +  G  +      YT+
Sbjct: 243 HSFATHMLENGVNLRSIQSLLGHASPVTTARYTR 276


>gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 375

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/370 (13%), Positives = 112/370 (30%), Gaps = 46/370 (12%)

Query: 11  VTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + +   ++G+  Y F     +  +G+R +       +F  A  +            +  +
Sbjct: 9   IKEYTLKNGEKRYMFYIYLGQDSNGQRKQTTRRGFKSFAEAEEA--YNHLNIENANDFVK 66

Query: 66  KKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +K  T+  +   +          S A  + I++      I    G+    KI+ + ++  
Sbjct: 67  QKQITINQMYEIWFARYRTTVKESTANKTAINYRV---HIKPFFGNAYMDKISVRDVQLW 123

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180
            +            +  +R  +++A+R  YV+INP  S+  P + +   R          
Sbjct: 124 ADKLATKLVKFNDPIFILRSFYEYAIRMNYVSINPVGSIIMPIKTSRPRRNVEDNVYSRK 183

Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------- 221
                F+       +    F+ L  +GLR S++       +                   
Sbjct: 184 ELELFFQVAKEYNLRAYTYFKLLASTGLRKSEALALTWDDIDFINGVIDVNKTLAVGLDN 243

Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWFKA 275
              ++  K+ + I        +  +       E                S      W +A
Sbjct: 244 KVQVQPPKSKSSIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEA 303

Query: 276 KATKAGVNK---SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTKGADR-I 329
              KA  +    + HG R   AT+   +       +    G   +    + YT   ++  
Sbjct: 304 IYNKAPKDLKHITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNK 363

Query: 330 RLGIKNSRRI 339
           +  +     +
Sbjct: 364 KEAVNMLNEL 373


>gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
 gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989]
          Length = 298

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 88/269 (32%), Gaps = 26/269 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPS 131
           Y +     SL+ ++  ++                 G    +          ++ + + P+
Sbjct: 13  YLE--KDRSLSTSTIGAYHEDLQAFHIFVYGKGIKGYKRVKNTDIDDFVENLKRQDYAPA 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           +  + ++S+R  + + V    +  NP L ++ PK   + I  +T E++    +  ++ + 
Sbjct: 71  TIRRRISSVRAFYNYLVNTGAMRKNPTLGLKAPKLNKKTIDYFTVEEIDLLLASVTDDTD 130

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              + +   E +  +GL+ ++     +  +      I        +          +   
Sbjct: 131 SGIRDKAVLELMYAAGLQLTELLELKMSDVDIRAGLITAGLKKRRVIPIGSHARKAVEKY 190

Query: 248 TPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
               ++               F+N   +K +       FK  A K G+   + + +R   
Sbjct: 191 ISDVRKLKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDYAAKTGIIKFTPNMLRNSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           A      GA    +    G + +   + Y
Sbjct: 251 AVHMLQNGADIKTVQELMGHENISITKQY 279


>gi|206580182|ref|YP_002239994.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206569240|gb|ACI11016.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 387

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 117/380 (30%), Gaps = 58/380 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G    +F    G+R+R      +          L     + + I        T + 
Sbjct: 4   TLRGGVWHCHFFTPSGKRVRRSLGTGDKKQAQELHDKLKAEAWRVDQIGD--LPVRTFEE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
               + +          S    ++  +  ++     D  KIT + +   V    +     
Sbjct: 62  CCIRWLREKDHK----RSLDDDKTKIEFWLQHFSGRDVSKITAEEVHEAVNGMINRKHLQ 117

Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                                     ++  Q L+ +R L + A   ++  I     ++  
Sbjct: 118 VWESKRDAAVRKGKPVPEYKPRQVSQATKAQHLSFIRSLLR-AAANDWGWIKTAPVIKTR 176

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K  ++ IR  T+E+ ++      E  +P + F   L +GLR S+      Q +       
Sbjct: 177 KPISKRIRWLTREEAERLIECMPESIKPVVIFA--LATGLRRSNIIGLEWQQVDMQRKVA 234

Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269
                       I V L D   ++L         +   +   K                 
Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKMRVD 294

Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  ++A   KAG+ +   H +R   A+    +G     L    GW++++    Y   A 
Sbjct: 295 DNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                 +++R+I ++  + D
Sbjct: 355 NH--LTEHARKIDAIFGASD 372


>gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
 gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855]
          Length = 308

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 91/304 (29%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124
              T++ +   +R+      +  ++  ++     + I+   G+ D   + + +       
Sbjct: 2   TKKTIREIADAWREDKRPY-VKQSTFAAYMLILENHILPYFGNDDTLSEKSVQTFVLQNL 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   +  S    L  ++++ K+ V+ E+++              + +   T  + ++   
Sbjct: 61  NAGMSAKSVKDILIVLKMVMKFGVKNEWMSYCEWEIKYPSTETNKELEVLTVANHKKILD 120

Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +  +    R L     L +GLR  + C      +     +I  Q+T   I V   D    
Sbjct: 121 YIRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHT 180

Query: 244 LLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKA 277
            L +     +                                         +  ++K   
Sbjct: 181 KLVINTPKTKNSCREIPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRNYYKRLM 240

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
            + G+ K   HG+R   AT   ++      +    G   +      Y     ++ +  I 
Sbjct: 241 EQLGIPKLKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIA 300

Query: 335 NSRR 338
              +
Sbjct: 301 KMFK 304


>gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 89/328 (27%), Gaps = 23/328 (7%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
                        +          +  R+ P  ++ LI  Y +      LA  +R    S
Sbjct: 66  TAAREEAKRLKREIDQGRDPMAERDEARESPN-VRQLIDRYLEEH-ASKLAKRNRDDQAS 123

Query: 98  YFDQII-RKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFLTSMRVLFKW 146
              +++    G     +I    +            G   RK TP  A +    +R +F  
Sbjct: 124 MLRKLVEPAWGPRKAAEIQPDDVDRLLCQIAGGTLGKRGRKPTPVRANRVGEILRKMFNL 183

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLR 205
           A+R      NP     R           T E  +   +       +   A   +L +G R
Sbjct: 184 AIRWRIRTDNPAAGFARNAEAPRDRYLSTDEIGRLSAALDAHPNRRAADAVRLILLTGAR 243

Query: 206 CSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             +   A       +  ++      T        P        +  I             
Sbjct: 244 RGEVLGARWDQFDLDAAVWIKPAATTKQRRLHRAPISASAAALLRTIRLRVPKDCEWVFP 303

Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +A          +++   TKA +     H +R   A++    G T   +    G   V 
Sbjct: 304 GDAEGKPLQDIKRFWEDVRTKAELPAVRTHDLRHTFASLLVSGGMTLPMIGKLLGHTQVQ 363

Query: 318 QAETYTKGADR-IRLGIKNSRRISSVVD 344
             + Y    D  +R G++    +     
Sbjct: 364 TTQRYAHLLDDPLRAGLEQVGDMLRAKP 391


>gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
 gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253]
          Length = 331

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR           A+   +  +   +E++  P     TL
Sbjct: 4   KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125
             L+  +     +   +             II K  +       ++T K I   R  + +
Sbjct: 62  TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118

Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P+S  + L  M  +F K     EY + NP   ++R +     +   + E++ +  S
Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREIKRLREAVTEMAFLSSEEITRLLS 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                     A    L +G R S+      +H+ N + +    K G   T+ +    +K 
Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +     G+            +  +     +         ++ H +R   AT     G   
Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNI 288

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   + Q  TY   A
Sbjct: 289 ITLQRILGHSNIQQTMTYAHFA 310


>gi|15616113|ref|NP_244418.1| integrase (phage-related protein) [Bacillus halodurans C-125]
 gi|10176175|dbj|BAB07270.1| integrase (phage-related protein) [Bacillus halodurans C-125]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 99/353 (28%), Gaps = 39/353 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + ++G+  Y        + +               A      +                 
Sbjct: 6   KMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEGQLHKGYDINAGDQLFSEY 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA- 133
           +  + +    G  + ++        + + +   D   + +T +  +  +     T S+A 
Sbjct: 66  MRNWYEVFRKGKKSEDNDNDIRRAVEFVEKYLPDVKLKDLTREMYQKALNEYGETHSTAS 125

Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  T MR   K A+    +  +P  +V    + + K E I+    E+  +        
Sbjct: 126 VKKHHTYMRACLKEALADGIIYKDPTFNVVAVGKVEPKNEEIKYLNYEEAAKLLRVTFGN 185

Query: 190 SQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------- 238
            Q R    ++    L +G R S+        +     ++   KT      +         
Sbjct: 186 LQQRYISRYIILFALATGARFSEIIGLTWDCVDFENKTVTINKTWDHKYKKWFDNTKNYA 245

Query: 239 ---------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                   + +           FIN+  + +     +   +   
Sbjct: 246 SKRTITVDDHTLSILKDLKRKQAQLAIKTGLRNEHNLVFINSKFELVTNNAVNKTLRLLC 305

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            KA +   + HG+R   A++    G     +    G K +    +TY+   D 
Sbjct: 306 KKANIKEITCHGLRHTHASMLLFKGVNIKYVSRRLGHKDIVTTLQTYSHIMDE 358


>gi|83310590|ref|YP_420854.1| integrase [Magnetospirillum magneticum AMB-1]
 gi|82945431|dbj|BAE50295.1| Integrase [Magnetospirillum magneticum AMB-1]
          Length = 321

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 82/331 (24%), Gaps = 18/331 (5%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +     GK       G G+R R    +       Y +A          I  P+    T+ 
Sbjct: 2   RIVDFRGKWCAVVHVG-GKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSD--TIA 58

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            ++  Y            +       +  +          +I     R     R   P++
Sbjct: 59  DIVDAYLADTKAI-----TSEYMRWMWGVLKPHCAGLRPDQIDRGWCREYASKRGKAPAT 113

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + ++ +    +WA              E P       R  T+ +  +           
Sbjct: 114 IRKEISFLAAAIRWAKGD----AGGGAVFELPSPPPPRDRWLTRPEFMRLLDAAQPHPHL 169

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                  L +G R           +      IF            V +      +L    
Sbjct: 170 VTFLHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQN 229

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
             +E      +            F   A  AG++  + H +R  +A   A  G +  ++ 
Sbjct: 230 QRREDSGYVVEYGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIA 289

Query: 309 ATYGWKTVDQAET-YTK-GADRIRLGIKNSR 337
              G       E  Y +   D ++       
Sbjct: 290 QYLGHSDHKITERVYARFSPDHLKDAAAALE 320


>gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL]
 gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL]
          Length = 291

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 84/291 (28%), Gaps = 26/291 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
             + ++ +       + N+  S+ +  ++ ++   +    K   + +             
Sbjct: 2   DWLKKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQDAREYRNYLLN 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             K  PSS  + + S++   ++ ++           +         I+  +++++ + K 
Sbjct: 62  VVKQKPSSINRKMASLKNFNQFLIQVGTGTEVNICGISVADIHDREIKTISRKELNRLKR 121

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTII 233
                   R      L   +G+R S+     VQ +           +  +++  K     
Sbjct: 122 AVYASGNKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIAVRNGKGNKYR 181

Query: 234 TVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            + L     + L                + +  +         K     AG+   SAH +
Sbjct: 182 EIPLNSQVKRALEEYLSTRSSSSDKIFISQRGPLRRESVDKIIKKYCRLAGIEEISAHVL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRI 339
           R    T           +    G  +V      Y + +   +       ++
Sbjct: 242 RHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRADKAA--AVEKL 290


>gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71]
 gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71]
          Length = 440

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/379 (14%), Positives = 103/379 (27%), Gaps = 59/379 (15%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPY-PHESTFIPAYMSALT-----GSTPKREYINS 63
            R  +G       Y  + G  RR ++       T   A   A       G          
Sbjct: 36  RRNSNGTTTALLGYRNKYGQRRRYKVGRITDTYTITQARDDADDLLTDIGRGADPLGEKQ 95

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +    +  L+  Y +SA +   A +++          +    G     +++   +R  
Sbjct: 96  STRNALNIDQLLDAYLESAKFAGKAESTQYMDKSRIKRHLRPLLGPVKVEQLSRDKVRRL 155

Query: 123 VESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161
               +   ++                    A   +  +  +F WA+ +     NPC  V 
Sbjct: 156 FSDIRDGKTATVEKTSKKRGKARVTGGESVARSSVKLLSAIFTWAIEEGLATENPCKGVN 215

Query: 162 -----------ERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLR 205
                      E P++         +  +                    A   L ++G R
Sbjct: 216 VGQSGVREAILETPEQYKSLFDALDRMQVSNIDPDDPGEVTPIPDAAANAIRVLAFTGAR 275

Query: 206 CSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            S+   A    +                   TG    + LP     ++       E  F+
Sbjct: 276 KSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPLPSPARAVIESLTRHGEDDFV 335

Query: 258 NNDKQKMNATQF-SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
               +        S  +     +AG+      H +R    TI A  GA A ++MA  G  
Sbjct: 336 FPATRGGGGISLPSKMWIQIRKEAGLPDGITNHSLRHSLGTIMAVQGAEAAQIMAALGHS 395

Query: 315 TVDQAETYTKGADRIRLGI 333
            +   + Y   A   R  +
Sbjct: 396 QLSTTQRYIHIARDARAAM 414


>gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 334

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 91/323 (28%), Gaps = 31/323 (9%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK I   Y     G+R+R           A+          + ++   +     L  LI 
Sbjct: 9   GKWICECYPAGREGKRVR-KQFATKGEALAFERFTMELVDNKPWLGEKQDTRL-LSELIE 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------------HIRSGVE 124
            + ++     L+     S       + R  GD      T K             I  G  
Sbjct: 67  IWHRAHGIT-LSDG--KSRHQVLLNMCRDLGDPRAIDFTAKTFSQYREQRLNGKILRGTR 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++  TP +    L  MR +F    R  E+   NP   V + +   + +   TKE +    
Sbjct: 124 TKGVTPRTLNIELAYMRAMFNELSRLSEWRYDNPLRGVRQYRTHEQEMAFLTKEQIVNLL 183

Query: 184 SFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 + P LA      L +G R S++       +     +    K     ++ + +  
Sbjct: 184 KECENSTVPELATVVRLCLATGARWSEAESLTHTQVMPYKVTYTKTKGKRNRSIPISEEL 243

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
              L                     + F    K    K    + +H +R   A+     G
Sbjct: 244 FNSLPKKTGRLF---------PSCYSAFRTALKRTNIKLPDRQCSHVLRHTFASHFMMKG 294

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    G   +     Y  
Sbjct: 295 GNILVLQRILGHTDIKMTMRYAH 317


>gi|329996334|ref|ZP_08302445.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3]
 gi|328539428|gb|EGF65438.1| prophage DLP12 integrase [Klebsiella sp. MS 92-3]
          Length = 387

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 117/380 (30%), Gaps = 58/380 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G    +F    G+R+R      +          L     + + I        T + 
Sbjct: 4   TLRGGVWHCHFFTPSGKRVRRSLGTGDKKQAQELHDKLKAEAWRVDQIGD--LPVRTFEE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
               + +          S    ++  +  ++     D  KIT + I   V    +     
Sbjct: 62  CCIRWLREKDHK----RSLDDDKTKIEFWLQHFSGRDVSKITAEEIHEAVNGMINRKHLQ 117

Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                                     ++  Q L+ +R L + A   ++  I     ++  
Sbjct: 118 VWESKRDAAMRKGKPVPEYKPRQVSQATKAQHLSFIRSLLR-AAANDWGWIKTAPVIKTR 176

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K  ++ IR  T+E+ ++      E  +P + F   L +GLR S+      Q +       
Sbjct: 177 KPISKRIRWLTREEAERLIECMPESIKPVVIFA--LATGLRRSNIIGLEWQQVDMQRKVA 234

Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269
                       I V L D   ++L         +   +   K                 
Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRDQIGKHSRWVFVHTTAKHRPDGTLTPAVRKMRVD 294

Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  ++A   KAG+ +   H +R   A+    +G     L    GW++++    Y   A 
Sbjct: 295 DNNAWRAGLKKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                 +++R+I ++  + D
Sbjct: 355 NH--LTEHARKIDAIFGASD 372


>gi|313633842|gb|EFS00566.1| DNA integrase [Listeria seeligeri FSL N1-067]
          Length = 359

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 103/344 (29%), Gaps = 39/344 (11%)

Query: 12  TKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            ++  + G     +Y++   G+R++       T   A              + S      
Sbjct: 4   YRDEDK-GNWFASFYYQDWKGKRVKKLKRGFKTKKEA------QEWENSFKLQSENSLDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
             K  ++ Y KS     +  N+ IS E   + +II   G+    +I    I         
Sbjct: 57  KFKDFVNIY-KSDIKTRIKYNTWISKEYIINLKIIPAFGERKINEIKPSDIIQWQNELIG 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKE 177
                    +P+        +  +F  AVR   +  NP  +V     K        WTKE
Sbjct: 116 YKNEQGKGFSPTYLKAIHNQLTAIFNHAVRFYDLKSNPARTVGCMGSKKSDKEMLVWTKE 175

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----------------VQHLQNNI 221
           +  +F     +      AFE L + G+R  +                      Q ++   
Sbjct: 176 EYLKFSDSMMDKDISFHAFEILYWCGIRVGELLALTPTDFNFAEGTVSITKSYQRIKGED 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                +       + +PD  +  +             +    +         K  A +  
Sbjct: 236 IITTPKTEKGKRIINMPDFLVDEMQDYIKRLYGCKPKSRIFPVTKAVLYSEMKRGAMEQN 295

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + K   H +R    ++  D G +A  +    G +++D    Y  
Sbjct: 296 IKKIRIHDLRHSHVSLLIDMGFSAVAIADRVGHESIDIIYHYAH 339


>gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 387

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 105/365 (28%), Gaps = 41/365 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----------PKREYINSPRK 66
            G+    +         L      +    ++ A                P  E     + 
Sbjct: 25  SGRWQASYLHNGAVYKALATFPTKSSAGHWLQAEEDLIDLDRRRPGEWTPPAERAARRQA 84

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TL+   + +  +     LA  +R ++  +  + I+   GD    +IT +H+R+    
Sbjct: 85  EKLTLRTYANTWLDNK--TKLARRTRDNYRGHLDNHILPALGDLGLAEITPEHVRTWFAG 142

Query: 126 RKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +   Q    +  +F  AV  + +  NPC      + K         +  Q  + 
Sbjct: 143 LGTEHDTRNAQAYAVLNGVFNTAVADDLIDRNPCRIKGAAQVKHAKRSVVLLDAAQLTEL 202

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQ 227
                   RLA     + GLR  +        +                           
Sbjct: 203 AVKMPDDARLAVLLAGWCGLRKGEVFALRRCDIAADGSTVRIERAVTYREGKFEVGPTKT 262

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAG 281
           +    +    P     +L                 + +        +F   ++A     G
Sbjct: 263 RESRRVVSVPPHVRPAVLDHLARHTAEGDEALVFTEPSTGSFAGEKRFRTAWEAAREAIG 322

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                 H +R  +  ++A  GAT  ELM   G  + + +  Y   A+     +  + ++S
Sbjct: 323 QPELHFHDLRHAAGVMAAQTGATLRELMDRLGHTSPNMSMRYQHTAEGRAAAL--ADKLS 380

Query: 341 SVVDS 345
           ++  +
Sbjct: 381 ALAAT 385


>gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf]
 gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf]
          Length = 327

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 48/304 (15%)

Query: 77  EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGV---- 123
            Y        + + N+   ++       R           + D + +  K I        
Sbjct: 13  AYLSYMDTIQNKSSNTIEGYKLDLILFFRFLKLSKNNLPLNTDIKDVCIKDIDENFLKSI 72

Query: 124 -------------ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
                          R +  ++  + +  ++  F +   + + + +NP  ++E PKR   
Sbjct: 73  SLIDIYNFLDYIKNYRDNCSNTRARKVAVLKSFFNYLKNKVKIIELNPTKNLETPKRPKR 132

Query: 170 GIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                + ++ +         +     +        L  GLR S+ C   + +++N+   I
Sbjct: 133 QPVYLSLKESEMLLDAVKIKNGRNKERDYAIITLFLNCGLRLSELCNIKLSYIRNDTLII 192

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWF 273
             +      T+ L +  +K +                  +  F++  KQK+N        
Sbjct: 193 TGKGD-KQRTIYLNNSCLKAINEYLNVRNKLKNIKDKDSDYLFLSERKQKINKRSVQRIV 251

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA-DRI 329
           +     AG++K  + H +R  +AT+    G      L    G + +     YT    D +
Sbjct: 252 QKFIEYAGLDKKYTVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDEL 311

Query: 330 RLGI 333
           R  +
Sbjct: 312 RSAL 315


>gi|116749926|ref|YP_846613.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698990|gb|ABK18178.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 110/350 (31%), Gaps = 33/350 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPT-----------T 70
           YY R   G ++ +       F     +A   G   KR   + P  +             T
Sbjct: 30  YYIRYRRGGKL-IEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERWT 88

Query: 71  LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           +  L  EY++ +     +          +   I    GD +  ++    +          
Sbjct: 89  ITRLWEEYKRGTPGLKGI----VTDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKMLKT 144

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H P++    L  +R +  + VR++ +       +  P+ + E     T +++ +     S
Sbjct: 145 HKPATVRNALELLRRIVNFGVRKQ-LCPCLSFQIPMPRVRNEKTEDLTPDELARLLKALS 203

Query: 188 EGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKL 244
           E    ++A    L  ++G+R  +  +     +  +   I  +     +   +P     + 
Sbjct: 204 EEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRGFISIRDPKGGVDQRIPLSESARR 263

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG 301
           +       ++ F+   +     T  +         A + K     HG+R   A+  A +G
Sbjct: 264 ILANHPKTDSLFVFPGRNGAQRTDINKSLNRIKEAAELPKDFRMLHGLRHAFASSLASSG 323

Query: 302 -ATAHELMATYGWKTVDQAETYTKGADR--IR---LGIKNSRRISSVVDS 345
               + L      K+      Y    D    R   L  +   +     D+
Sbjct: 324 EVDMYTLQKLLTHKSPTMTARYAHLRDESLRRASDLAGEIIEKAVKKKDN 373


>gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 335

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 80/312 (25%), Gaps = 40/312 (12%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHI 119
            P      L   +S Y       +L+ N+  ++        +  R   +    K+  + +
Sbjct: 2   KPTDFSIYLSRFLSNYLA--GQRNLSPNTIKAYRDVFILLLRFCRDVKNIPIEKLQLEQV 59

Query: 120 R---------SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                        + R  TP +    LT++   F++   ++ + +  C  +     +   
Sbjct: 60  DVVLIEAFLDHIEKDRHCTPRTLNHRLTTLHAFFRYIQVEDPLYLLQCQRILAIPLRRFV 119

Query: 171 IRPWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +                   EG +  +    L  +G R  +     V  ++    +
Sbjct: 120 RPEVSYLSKDHLAALLAQPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPA 179

Query: 224 IKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------- 268
                 K   I  V L D    LL                  +                 
Sbjct: 180 QVRILGKGRKIRVVPLMDNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYI 239

Query: 269 ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +    +  + +     S H +R          G +   +    G   +   E Y + 
Sbjct: 240 LQKYERLVREASPQYKQRISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARA 299

Query: 326 -ADRIRLGIKNS 336
             +  R  I+  
Sbjct: 300 NLEMKRAAIEKV 311


>gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 326

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+    T +   ++     R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEAVAFER-YTIANASQKEWAGQRADRRTLAELLDVWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    +++ + +     +R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDMPVSRVSKRALMDYRSTRLRDGISAATINRDMYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKSEIEKLLSVLVG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISAELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
 gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231]
          Length = 301

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 84/273 (30%), Gaps = 22/273 (8%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHT 129
            +  +         LA  +R  +    + +    G        ++   HIR  +  R  +
Sbjct: 4   WLERFDAHLRTERRLARLTRQHYRRDLETLAGYCGALGLSGWEQVNATHIRRFIAWRHRS 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  + L+S+R L+++ +R+     NP   V  PK +         ++        
Sbjct: 64  GLAGRSLQRMLSSIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAHLLDEP 123

Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
                 R      FE L   GLR ++        +      ++       +  V +    
Sbjct: 124 PASDPLRVRDVAMFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCKMRVVPIGRQA 183

Query: 242 MKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
              L              +   F+    ++++     +  +  A + G+++    H +R 
Sbjct: 184 RCALLRWLTLRPGLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGLHRRVHPHMLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+   ++      +    G   +   + YT 
Sbjct: 244 SFASHLLESSGDLRAVQELLGHAHIGTTQVYTH 276


>gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
          Length = 330

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 41/300 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V    
Sbjct: 17  TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWH 75

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185
            T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F   
Sbjct: 76  KTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQN 135

Query: 186 WSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226
             E +  +L   F L  Y+G+R S++     + +     +                    
Sbjct: 136 TKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQVP 195

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------SI 271
           +   +  T++L D  +K L +    +    I       +  QF               + 
Sbjct: 196 KTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVND 255

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     +
Sbjct: 256 WLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQ 315


>gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 280

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 79/261 (30%), Gaps = 24/261 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---------SGVESRKHTPSSAIQF 136
            L   +  ++        R   + +   +    +            + +R   P++  + 
Sbjct: 9   ELNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPATVNRR 68

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + ++R   +W   Q  +   P    +R  +     +  +K + ++F     +    R   
Sbjct: 69  MAAIRAWMRWCQEQGLIENLP-RWPKRAAQVQHAPKALSKREQERFLRAVEKEGNRRDVA 127

Query: 197 EF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIG 251
               +L++GLR  ++ R  V  +  +    K   T        V L      ++      
Sbjct: 128 LIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARNMVRDWLNH 187

Query: 252 KETFFINNDKQK------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
           +                 ++A       K  A +A +     + H +R   AT     G 
Sbjct: 188 QAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRHTFATNLLRDGV 247

Query: 303 TAHELMATYGWKTVDQAETYT 323
               + A  G   +D    YT
Sbjct: 248 DLVTVAALLGHSRLDTTARYT 268


>gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli
           B7A]
 gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 16-3]
 gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167]
          Length = 331

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR           A+   +  +   +E++  P     TL
Sbjct: 4   KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125
             L+  +     +   +             II K  +       ++T K I   R  + +
Sbjct: 62  TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118

Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P+S  + L  M  +F K     EY + NP   V+R +     +   + E++ +  S
Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                     A    L +G R S+      +H+ N + +    K G   T+ +    +K 
Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +     G+            +  +     +         ++ H +R   AT     G   
Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNI 288

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   + Q  TY   A
Sbjct: 289 ITLQRILGHSNIQQTMTYAHFA 310


>gi|323138436|ref|ZP_08073505.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396232|gb|EFX98764.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 428

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 115/384 (29%), Gaps = 52/384 (13%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTG-----STPKREYINSP 64
                GK +YY    +     +R+++    + T   A   AL                + 
Sbjct: 32  RVHPTGKRVYYVDYRNAGGARKRMKIGDHGKITTDEARKMALATLGGVVKGDDPLTERTT 91

Query: 65  RKKPTTLKWLISEYRKS--------AHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKIT 115
           R++  T+K L ++Y  +                ++           I+   G    +++T
Sbjct: 92  RRESITVKELCADYMAAAEKGLIFGKKRRPKKPSTISQDHARIDRHIVPLLGKKLVKELT 151

Query: 116 TKHIRSGVESRKHTPSSA---------------------IQFLTSMRVLFKWAVRQEYVA 154
              +   +     T  +A                      +    +  +  WAV +  + 
Sbjct: 152 RADVAKFIRD-VTTGKTALDLPSDKPRGRVIVRGGAGTAARAANFLGAVLTWAVHEGIID 210

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL------YSGLRCSD 208
            NP   V+R   +    R  T ++ +   +   +       ++ +        +G R  +
Sbjct: 211 SNPAHGVKRQADQKRTRR-LTPDEYRALGNALRQAEDEMATWQGVAGARLITLTGCRLGE 269

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--A 266
             +     +       + Q T    +       +  +       +         +     
Sbjct: 270 IAKLRWSEVDEAAGCFRLQDTKEGASTRPMGRAVFDILAGVDRVDGSPYVLPAVRGTGAY 329

Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              + +F+  A +AG+   + H +R   A+ +AD G     + A  G         Y   
Sbjct: 330 GGLTGFFEKVAARAGLQGVTPHTMRHSFASTAADLGFAESTIAAMLGHAAGSVTARYVHH 389

Query: 326 ADRIRLGIK--NSRRISSVVDSDD 347
            D + +      + RIS+++D  +
Sbjct: 390 LDAVLIAAADRVAARISAMLDGRE 413


>gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 381

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 107/367 (29%), Gaps = 51/367 (13%)

Query: 11  VTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   +     Y FR         G  R IR             +  +       +Y  
Sbjct: 4   IQKYLDKDENTRYKFRYYAGVDELTGKQRYIRRQGFTSEEDAKNELLKIKYLVSTNQYFK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
             +        ++ E+  + H   +  ++    E      +     D    KIT +H + 
Sbjct: 64  DVKSGK--FGDVLDEWL-TLHKTRVKASTYHIIETRVTKYVRPYFNDMYVDKITVRHCQD 120

Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            V      TP   +  ++ ++    +A+R   +  NP L V +PK++            +
Sbjct: 121 FVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPKKQATISDKHDNFYNK 180

Query: 181 QFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
                          +    F  L YSG+R  +        L     +I   KT      
Sbjct: 181 DELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLDYKNNTITINKTLARTDK 240

Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265
                                    +     +   +LL +         +  +  K +  
Sbjct: 241 GITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLKIGINSMNKHQLIFNSNKNSFI 300

Query: 266 -ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            ++  +   K  A KAG+   ++HG R   AT+   +G    ++ A  G   V    + Y
Sbjct: 301 FSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVY 360

Query: 323 TKGADRI 329
           T      
Sbjct: 361 THTMKDK 367


>gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43]
 gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43]
          Length = 326

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 27/309 (8%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             +    ++      F+ +++     GD    +++ + +      R     + ++  + +
Sbjct: 73  GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  +F   ++ +  +    +    P            E  +  K          L   
Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 186

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R ++        + N   +    K G   TV         ++     K     
Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    K++  +F    +        N++ H +R   A+     G     L    G  ++ 
Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298

Query: 318 QAETYTKGA 326
           Q   Y   A
Sbjct: 299 QTMAYAHLA 307


>gi|91205255|ref|YP_537610.1| integrase [Rickettsia bellii RML369-C]
 gi|239947373|ref|ZP_04699126.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|91068799|gb|ABE04521.1| Integrase [Rickettsia bellii RML369-C]
 gi|239921649|gb|EER21673.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 388

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 16/312 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82
               RI++      + I A + A        +        +   K  T K     Y    
Sbjct: 59  KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141
              +        + +  D+  +   +     I    I+        T    A +FL  + 
Sbjct: 119 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEVLS 176

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFL 199
            +F  A+  E + +NP + +++  ++    R  T+E++ +F +  SE      +  F   
Sbjct: 177 PVFSKAIEWELLTVNPVIGIKK-HKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIA 235

Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           LY+ +R  +      + +        +   K G    + L D  +++L       ++ ++
Sbjct: 236 LYTSVRKDNVLTMRWEQISFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSDSIWV 295

Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
              +   +    +    +K    KAG+     H +R+   +  A  GA  + +      +
Sbjct: 296 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 355

Query: 315 TVDQAETYTKGA 326
                  YT+ A
Sbjct: 356 DPRSTAVYTRLA 367


>gi|239947433|ref|ZP_04699186.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921709|gb|EER21733.1| integrase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 100/328 (30%), Gaps = 16/328 (4%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82
               RI++      + I A + A        +        +   K  T K     Y    
Sbjct: 59  KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 118

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141
              +        +    D+  +         I    I+    +   T    A +FL  + 
Sbjct: 119 SKINNKR--WKDYADSVDRYAKHLYPRKISTIQKTDIQELFNNLTKTGKYGANRFLEVLS 176

Query: 142 VLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
            +F  A+  E + INP + ++   ++  +      +           +    +  F   L
Sbjct: 177 PVFSKAIEWELLTINPVIGIKKHKEQSRDRYLTREEIPRFFTAIADEQNQVMQDFFLIAL 236

Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           Y+ +R  +      + +        +   K G    + L D  +++L        + ++ 
Sbjct: 237 YTSVRKDNLLTMKWEQVSFTDKQLYLPETKNGDPHRLPLLDQAVEILKARKEQSTSMWVF 296

Query: 259 NDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +   +    +    +K    KAG+     H +R+   +  A  GA  + +      + 
Sbjct: 297 PSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHRD 356

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVV 343
                 YT+ A+      +  +R  S +
Sbjct: 357 PRSTAVYTRLAND--TAREYMQRAVSTI 382


>gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 133/382 (34%), Gaps = 47/382 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           ++   + P  +  ++  +G +  Y   ++ G      L             +    +   
Sbjct: 8   LSTKEKQPVKIRYKKLANGNLSIYLDIYQNGKRNYKFLKLYLVPETNEKAKAINRKNMDL 67

Query: 58  REYINSP------------RKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR 104
            E I +               +  + K L+ +Y +S A     +  ++ +  S    + R
Sbjct: 68  AEAIKAQMIIQLNTTIHGLSNQKESSKILLRDYIRSFAETKGKS--TQQNLNSLVYHLER 125

Query: 105 KSG-DFDYRKITTKHIRSGVES--------------RKHTPSSAIQFLTSMRVLFKWAVR 149
             G D    K+   +I   +E               RK + +S   +   ++++   AV 
Sbjct: 126 SKGTDIQIGKVDKYYIMDFIEYLEDAQIEHTQRNKGRKLSKNSQAMYFKCLKMVLDEAVS 185

Query: 150 QEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            + + +NP LS+++  R +          T++++++F          + AF     +GLR
Sbjct: 186 DDIIPLNPILSIKKKYRPSAEKAPKREFLTEDELRRFAGTDHPNELLKRAFMIGCLTGLR 245

Query: 206 CSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
             D  +    ++          S+  +KT   + + L +   K L           + + 
Sbjct: 246 HCDIKQMKWSNIGVVKNGIECISLVQEKTNDPVDIPLNENIRKWLPEQGNASMEDLVFSG 305

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              +  +  +      A KAG+NK  + H  R   A ++       + +    G +++  
Sbjct: 306 LITLGRS--NEILPKWAEKAGINKHLTFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITV 363

Query: 319 AETYTKGADR-IRLGIKNSRRI 339
            E YT+  D   +  ++   +I
Sbjct: 364 TEIYTEVLDNSKKEAMEAIGKI 385


>gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 103/366 (28%), Gaps = 40/366 (10%)

Query: 5   LRLPPFVTKERTRHGKI--IYYFRKGH----GRRIRLPYPHE-------STFIPAYMSAL 51
            +    + ++   + K    YY R        + +++    E       +      ++ L
Sbjct: 6   TKYTGVIYRDSITNEKTDKTYYIRYKDINNKTKELKIGKYSEGVRENYCNQKRNEIITKL 65

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGD 108
                     N  +K     K+L  +Y ++         ++  +         ++     
Sbjct: 66  RLGEEPPAMANKKQKNSIAFKYLQDKYFETRRE------TKSKYSDIVTANKHLVPFFEK 119

Query: 109 FDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +   +T + I++  +  K          +P S    LTS   +  + +++E +  +   
Sbjct: 120 KNLETLTKEDIKALTKLLKTKTTPKGTQLSPKSRNNILTSFASIINYGLKEELIKNDVTK 179

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +E+ +   E  R    E++ +         +  L  +  L +G R           L  
Sbjct: 180 YIEKERIDNERERYLELEEINKLYEEVEHNPRLYLFCKLALTTGGRLGTILNISKMDLDF 239

Query: 220 NIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +   I                  +  L                +     +  +       
Sbjct: 240 SNQIITLKDFKNNSTYKTFLTDDVTNLLSNYCKNLNQQDKIFIEPTTIQRQILKILHSLF 299

Query: 279 KAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             G++K         H +R   A+  A  G     +      + +     Y K A D  R
Sbjct: 300 NVGIDKEDRKNLVVLHTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKLAPDSGR 359

Query: 331 LGIKNS 336
             I+N 
Sbjct: 360 CAIQNL 365


>gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 327

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 16/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + T   A+         K+E+ +    +   L  L+  +       +L
Sbjct: 20  RNGKRIR-RRFEKKTEAVAFERYTLSRADKKEWQHGYGVEHRQLSELVELWWLYYG-QNL 77

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
                   + +  +   +  D +  +I  + I      R     + S+  + +  +  +F
Sbjct: 78  KNGLIE--KRHLKRTAAQMDDPEICRINKRSILEFRTRRLYDGISSSTVNRDIYRLSGMF 135

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              ++ E       L    P  + +    +  E          EG Q RLA    L +G 
Sbjct: 136 SALIKLEIYTGENPLKELPPLPEKQPTVTFLTESEIARLLDTMEGDQYRLAVLC-LSTGA 194

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  ++     + + +N  +    K G   T+ + +   +++     GK          K+
Sbjct: 195 RWGEASTLRAEQVMHNRVTFTETKNGKNRTIPISEEVTRIIKTRETGKLF--------KV 246

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + + F    KA        +++H +R   A+     G     L    G  ++ Q  TY  
Sbjct: 247 DYSAFCEQIKAVKPDIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAH 306

Query: 325 GA 326
            A
Sbjct: 307 LA 308


>gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280]
 gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280]
          Length = 341

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 100/335 (29%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +       Y +      R  +        + A          K E   + R
Sbjct: 12  KLPPNVYPNK-------YSYVWKPTSRESVTLTAIKDGLAALWK-------KYEETVNNR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC       +     R     D +    
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAG---VSKFKAKNRERYVTDKEYQAV 174

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG             +
Sbjct: 175 LSVASPPVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +       +      N    +     F+  +      AG       + + H +       
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVETRNLAGQISGIATDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|224369185|ref|YP_002603349.1| phage integrase protein (DNA breaking and rejoining enzyme)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691902|gb|ACN15185.1| phage integrase protein (DNA breaking and rejoining enzyme)
           [Desulfobacterium autotrophicum HRM2]
          Length = 360

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 19/332 (5%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G   +      G+  R         +   + +       +      +    + + L   
Sbjct: 7   RGNTWWIKYYRQGKYYRESSGSTKKMVAKKLLSRREGDIAKGKTPGVQFDKISFEDLAEN 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAI 134
           + +          ++ +     + +          +ITT  I + +ESR +  +   +  
Sbjct: 67  FLRDYRVNQKKSLTKAT--RSVNHLSTAFERLAVPQITTPRINAFIESRINEGAANATIN 124

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + L +++ +     +Q    ++       P  +   +R    E  +      +  +  + 
Sbjct: 125 RELAALKRMMNIGAQQTPPMVDRV--PHIPMLEENNVRKGFFEHDEFLALRDALPTYLKG 182

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI 250
              F   SG R S+       ++      +     T K     T+ L D  M +      
Sbjct: 183 LVTFAYKSGWRVSEITGMQWSNVDLPKRIVWLEIGTTKNKEGRTIYLDDELMDVFNAQRE 242

Query: 251 GKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGAT 303
            ++           N         F   +     +AG+     H +R+ +      +G  
Sbjct: 243 IQKRGQQIVPYIFPNRNGDDKIKVFRRAWVTACRQAGIPNRIFHDLRRTAIRNMVRSGIP 302

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               M   G KT    E Y        L I  
Sbjct: 303 ERVAMMISGHKTRSVFERYN-IVSEEDLMIAA 333


>gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport]
          Length = 337

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++   R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDRLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLFWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
 gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855]
          Length = 293

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 24/265 (9%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---K 127
             +     +  + +  + +S+     +          + D+  +    +R  V +     
Sbjct: 4   DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----F 182
           +T +S  + L+S+R  +++ +++  +  +P L +  PK K        + +M +      
Sbjct: 64  YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGF 241
                 G + R+  E    +G+R S+        +  +      T K      +   +  
Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183

Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291
            + + +    +          FF+  + ++M   +  +  K   +K  +   +S H +R 
Sbjct: 184 RRAMFVYLKIRNEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTV 316
             AT   +  A    +    G  ++
Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268


>gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571]
 gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571]
          Length = 242

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 17/223 (7%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +  RK   SS  + ++S+   F++  R++++ I+P   +   + + +    +   ++
Sbjct: 1   MQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNEL 60

Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234
           +Q             +    FE    +G+R S+     ++ +  N+ +I    K      
Sbjct: 61  KQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRY 120

Query: 235 VELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
           V   D   K L                ++  F++N    ++        +    +AG+  
Sbjct: 121 VAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISG 180

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 181 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 223


>gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 282

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 85/266 (31%), Gaps = 15/266 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +   Y +      L+ +++ +++       +   +  +R +    +     +   T +
Sbjct: 3   DEISKRYLEFCA--GLSKSTKNAYKYGLRTFQKYV-NKRWRDVMVNDVILFYTNHNATKN 59

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S +  L  +   + WA+ + Y+  NP     +  R+ +  R +      ++     +   
Sbjct: 60  SKMGLLGIVNRFYDWAIEENYLLENPVKKFLKTLRREKKERNYLTTSQAEYLLSNMKKYS 119

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT-------VELPDGFM 242
             +   F+L +G+R S+     +Q +        I+  K                   ++
Sbjct: 120 YYVMTLFILRTGVRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYI 179

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           K         +  FIN   + ++       + +    A    +  + H +R   AT   +
Sbjct: 180 KERCYRDPDCDNLFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLE 239

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            G     L    G + +     Y   
Sbjct: 240 RGIDLKSLSLILGHENISTTSIYLHK 265


>gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 286

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 80/268 (29%), Gaps = 19/268 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L     +      L+  ++I +     ++            T + +R    +     +  
Sbjct: 11  LRQRMIEDMTMRRLSPKTQIGYIRGVKKLAAYL-KRSPEDATAEELRQFQLALAEQGASN 69

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    L+ ++ LF   +    V     L V       +     +KE+++Q         
Sbjct: 70  ITINATLSGLKFLFHKTLNLLDVM----LKVSTVPVPRKLPTVLSKEEVKQLIDATHT-I 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITV------ELPDGFM 242
           + + AF     +GLR  +     V  + ++   ++ ++                      
Sbjct: 125 KYKAAFSVAYGAGLRIGEVVALKVTDIDSSRMLLRIEQGKGKKDRMAMLLTTLCQWYKHA 184

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           K   +   G   F   N    +   Q S  +K+    AG+    S H +R   A    + 
Sbjct: 185 KAHHLMLNGGWLFPGQNPLNPIGTRQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLED 244

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
                 +    G   ++    Y + A +
Sbjct: 245 KVDIRVIQTLLGHSKLETTALYAQVASK 272


>gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863]
          Length = 337

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 96/340 (28%), Gaps = 47/340 (13%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T  +  +GK +   Y     G+R+R           A+ +       K+ ++     + 
Sbjct: 1   MTIRKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLGEKEDRR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125
             L  LI  +       SL   +    +    +   I    GD    ++T        E+
Sbjct: 60  H-LSELIELWY------SLYGQTLADPKRLMAKLGIICNGLGDPIASELTAGDFTKYREA 112

Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170
           R                 P +      ++  +F    +   + A NP   +   K     
Sbjct: 113 RLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +   + +++++  +  +E   P L       L +G R S++       +     +    K
Sbjct: 173 LAFLSTDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQISKYRITYTKTK 232

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                TV +       L        T                  F+    +AG++     
Sbjct: 233 GKKNRTVPISQDLYDELPKNRRKLFTPC-------------RKAFERAVKRAGIDLPEGQ 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+     G     L    G   +     Y  
Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 79/300 (26%), Gaps = 53/300 (17%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
                   A  +  ++ S+  Q I          +   H+   +         A +    
Sbjct: 11  DHMRTRHYASKTIQAYISWIKQYIIFHKMAHPSTLNETHVEEFLSYLALEQKVAAKTQAL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  +           ++  +  ++     +     TK +++          + +L    
Sbjct: 71  ALNSIMFLYREYFRTPLSNEIKFQKSLLDRKLPVVLTKSELRSLIQH--IDPRYKLHIML 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  SGLR  +  R  VQ +  +  +++  +                              
Sbjct: 129 LYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTVTLAKELFPMLKQQEELALRYY 188

Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                    E+   +  L     +  +       +  +N     
Sbjct: 189 QKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEKLSIDPESNLLRRHHINEQSLQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  AG+ K+   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 249 RAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308


>gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 25/302 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV 123
           + K  T+      +     + + +  + I +           G + +   +T ++ +S  
Sbjct: 2   KPKNVTIYEAYKMFINEQLFRNNSKRTLIWYNENLSAFFNWLGENKNVDSLTVENYKSYC 61

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGI 171
              +H            SS    + +++  + + + ++ +        + +  K +   +
Sbjct: 62  TFLQHDYVKRNGQPLKSSSVNSRVRAIKAFYNYCIEEDLLPDFSKKLKATKIRKTEKLPL 121

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230
                  +       +   + R     +  SGLR  +     + ++     F I T K  
Sbjct: 122 DDDEIHTLVSAFGDSALEERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGD 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV- 282
               V L +     LA                F+N   +K         F+    + G+ 
Sbjct: 182 KQRFVPLGELSKISLATYIRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGIL 241

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AH +R   AT     G     L    G   +     Y   A+  +L     R+  S 
Sbjct: 242 RLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQ---RKHQSH 298

Query: 343 VD 344
           +D
Sbjct: 299 LD 300


>gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 23/268 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139
              + N+  ++ +   + I+   + +   I  +H         + S   + +S  ++  +
Sbjct: 23  RGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPRHEYMSRFLKAMASEGKSKASLQRYAAA 82

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195
           +R   ++   + +V     L    P ++ +  R  ++ ++++  S   +GS    +    
Sbjct: 83  IRSWNRYLTIEGWVDGEQWLPS-LPSKEQKLPRILSEGEIERLISSCRDGSVLGGRDEAL 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT------ 248
           FE     GLR S+ C   ++ +     +++          V L     + L         
Sbjct: 142 FELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVVPLLGSVKEKLRHYVDAIRP 201

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302
                 +   F+    +K++        + +   AG+       H +R   AT     G 
Sbjct: 202 LLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVRLHPHVLRHSLATHMLRRGL 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330
               L    G  ++   E YT     +R
Sbjct: 262 DLRTLQELLGHASISTTERYTHLDLELR 289


>gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 323

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 20/296 (6%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-- 106
             ++G   +   +           + +  ++ +      +  +            +    
Sbjct: 2   RIISGFRKRSIEVPDETGYKIDFDYAVELFKDAYMVDEWSQRTLNYHLENLTAFKKFLTT 61

Query: 107 GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
              +   I+ K +   V+S K+     ++    + ++RV F+    +EY+  NP L ++ 
Sbjct: 62  QAVNISLISAKTLDEYVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYIPDNPALGLKT 121

Query: 164 PKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +     I P++ E +     Q       G +  +  + LL +G+R  + C      +  
Sbjct: 122 IRGPKPEIFPFSDEQINALLAQPDRTTFAGLRDYMIMQILLDTGVRLEELCNIKYSDVNL 181

Query: 220 NIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSI 271
               I  +  K     TV       + +                 +N D   +       
Sbjct: 182 KTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTGDLDAETNLILNQDGNPLKQRSVQD 241

Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                A+ AG+     S H  R   A      G   + L    G  ++     Y +
Sbjct: 242 RISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLR 297


>gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 331

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 81/260 (31%), Gaps = 14/260 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPS 131
             +  +      +  S   + S    ++ K G     +ITT  +R+        +K +  
Sbjct: 58  ELFIAAKKVEGCSEKSLKYYASTIRTMLDKIG-KQVLEITTDDLRAYLTDYQAEKKSSKV 116

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +   F W   ++Y+  +P   + + K        ++ E +++ +    +  +
Sbjct: 117 TIDNIRRILSSFFTWLEDEDYILKSPIRRIHKVKSAATIKETYSDESLEKMRDKC-DSLR 175

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI 250
                + L  +G+R  +  R     ++ +               V         L     
Sbjct: 176 DLAMIDMLSSTGMRVGEMVRLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNYLQ 235

Query: 251 GKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
            +            +  +++      +  +    +  + K   H  R+  AT++ D G  
Sbjct: 236 SRTDSEPALFVSLRSPHRRLTIGGIELRLRELGKRLDIPKVHPHKFRRTLATMAIDKGMP 295

Query: 304 AHELMATYGWKTVDQAETYT 323
             +L    G + +D    Y 
Sbjct: 296 IEQLQHLLGHQRIDTTMHYA 315


>gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01]
 gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01]
          Length = 380

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 97/364 (26%), Gaps = 43/364 (11%)

Query: 9   PFVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             +   +   G+     Y R   G   R+      T   A   A    T   E    PR+
Sbjct: 4   KGLKPRKRADGRWEARPYLRMEDGTLKRVSVFG-RTAEEALRKARELVT-LHEKGLLPRR 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
            P TL+     +       SLA  +  ++       ++  G    + I    IR  ++  
Sbjct: 62  DPRTLQAFAEAWLARKE-KSLAAKTLANYRREVGYFLKYLGQKRLQDIRPLDIRQALDRM 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   +  + L  +R LFK A+  E VA +P  +V     +        +    +  
Sbjct: 121 AAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRLKAERRPKAGRSLEPHEAEAL 180

Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSI 224
               +        +A    L  GLR  ++       +                       
Sbjct: 181 LAAFDAWPTWGVGMALRLCLALGLRAGEALGLKWGDIDLEAGTLSVRRAWTCLGGRGHLT 240

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270
             + +    T+ +P   +  L                           +  + +N    +
Sbjct: 241 TPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLRPKDLKEWWVFPSEKDPSRPLNPHSLN 300

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              +    K G+     H +R    ++    GA    +    G  + +     Y      
Sbjct: 301 HALRKMTAKLGIPPVRVHDLRHSYGSLLLANGAPLELVAERMGHASPNVTLSVYRHLLAH 360

Query: 329 IRLG 332
            R  
Sbjct: 361 ERTA 364


>gi|168789717|ref|ZP_02814724.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|193063225|ref|ZP_03044316.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|261223701|ref|ZP_05937982.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255890|ref|ZP_05948423.1| putative phage integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|300823456|ref|ZP_07103586.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|301020189|ref|ZP_07184315.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|301325450|ref|ZP_07218936.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|189370767|gb|EDU89183.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|192931133|gb|EDV83736.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|300398896|gb|EFJ82434.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 69-1]
 gi|300524074|gb|EFK45143.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|300847748|gb|EFK75508.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|320190202|gb|EFW64852.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|325498379|gb|EGC96238.1| site-specific recombinase, phage integrase family [Escherichia
           fergusonii ECD227]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 264

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 26/227 (11%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R    SSA + +T++R   K+ + +   + +P  +V  P+      +  + E++++   
Sbjct: 20  ARPLASSSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQPGRRLPKALSIEEVRRLLE 79

Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
             S        + R   E L  +G R S++    V  L  +   ++   K      V + 
Sbjct: 80  AASIDDSPVSLRDRALLEVLYATGARISEAVGLVVDDLDADSRLLRLFGKGRKERVVPMG 139

Query: 239 DGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV----- 282
               + L    +                F+N   + ++        +  A +AG+     
Sbjct: 140 TYAWEALDAYLVRGRPALAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLTGAGA 199

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + S H +R   AT     GA    +    G  +V   + YTK 
Sbjct: 200 STERHISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKV 246


>gi|323972425|gb|EGB67632.1| phage integrase [Escherichia coli TA007]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPGYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHAQQIDS 366


>gi|309700473|emb|CBI99767.1| prophage integrase [Escherichia coli ETEC H10407]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|62178894|ref|YP_215311.1| hypothetical protein SC0324 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126527|gb|AAX64230.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713346|gb|EFZ04917.1| DNA breaking-rejoining enzyme, catalytic core [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F   +G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEDACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     I+       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWIQHFAGMQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    ++ P+ K
Sbjct: 121 LMDEACRKKGRQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKIPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E    +   EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPE--PLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1058]
          Length = 328

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 77/264 (29%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
             L+  +  +      +  S   ++   + ++        R +TT  +R       + RK
Sbjct: 51  SKLLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTSIRDLTTSDLRTYLARYQQERK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K        ++ E ++  +    
Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +  R   + +              +   V         L 
Sbjct: 170 K-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLI 228

Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++           +              +    KA +NK   H  R+  AT + D
Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312


>gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 370

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 99/342 (28%), Gaps = 27/342 (7%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           V    T  G+ ++   +RK   ++             A+ + +           +P    
Sbjct: 4   VEPYTTSLGEKLWLVRYRKPDRKQTTKRGFTTKRDANAFANEVE-VKKATGSYIAPALGR 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+  +   +        L  ++    ES +  ++  + G      +    +   +   +
Sbjct: 63  VTVSSVAEGWLTHKEAT-LKPSAWRPVESAWRARVEPEWGAVRISDVEQVDVERWIARLR 121

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +S ++   ++  +   AV+   +A NP   ++   RK    R +   D     +
Sbjct: 122 TQNLSATSVLRAHQTLAGVLDLAVKSRRLASNPARGIDGLPRKVRKPRTYFSTDQLHSLA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TII 233
             S+G +  +     +      +   + G          I+                   
Sbjct: 182 DESKGHRTLVLLLGTMGPRWGETVGLQVGDCDFLRRRVHIRRNAVQLGGGQIVVGTPKGH 241

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNK-S 285
                     LL       E    ++         F       S WF     +AG+ + +
Sbjct: 242 EDRWVPIPPFLLDDLARQCEGKKRDDLVFPARGGGFLKRPYAESGWFDGALRRAGLPRVT 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R  +A+I+   GA    L    G       + Y    D
Sbjct: 302 PHDLRHTAASIAVSNGANILALARMLGHDPAMTLKVYADLFD 343


>gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 420

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 97/306 (31%), Gaps = 30/306 (9%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYR-----KSAHWGSLAVNSRISFESYFDQIIR 104
           AL      +   ++P+ K  T+      Y      ++   G +   +   +    +++  
Sbjct: 92  ALEIKNKLQGKESTPQHK--TILQAFD-YHNLKMAETVKVGKVVPKTLTRYHITRNKVAN 148

Query: 105 KS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
                    D    ++    +           K   ++A +++ +++ +   AV  +++ 
Sbjct: 149 FIKLQFKAADKPLPEMRLSFVTEFEHYLLTVEKIQSNTAHKYIKNLKKIMNMAVGLDWIP 208

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCR 211
            NP    +     +       ++++    +     ++    R  F F  Y+G   +D  +
Sbjct: 209 SNPFTQFKC-SYTSPDREILNQDELNLIMNKKMHTARLEEVRDVFIFCCYTGFAYADVYQ 267

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNA 266
                +   +       T    T            +++L+     +     N      + 
Sbjct: 268 FEKDAVMKGLDGNLWLSTNRQKTGTKESVPLLPIPLEILSKYQDHEYCLKYNKLLPVNSN 327

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323
            +++ + K  A   G+ K  ++H  R   AT      G     + A  G   +   + Y 
Sbjct: 328 QRYNSYLKEIADLCGIKKKLTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYA 387

Query: 324 KGADRI 329
           K  ++ 
Sbjct: 388 KVVEQK 393


>gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
 gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 104/276 (37%), Gaps = 24/276 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSG---VES 125
            + +I E+         +  +  +++S            +    +I  KHI+S    ++ 
Sbjct: 3   WEDIILEFCMDVTVKGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKHIKSWIIDMQE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++   S+    ++ ++ LF + + ++Y+  NP + +ER K + + I P    +++Q  + 
Sbjct: 63  KEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122

Query: 186 WSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +     +A         ++  GLR S+ C    + + NN   I+  K      V +  
Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182

Query: 240 GFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN----KSA 286
              K +      K+  +         ++N  +K+N        +    +  +      S 
Sbjct: 183 ILKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H +R   A++    G   + L    G  +++  + Y
Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRY 278


>gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L   +R+            +A  +   +E+                D    +++ + I
Sbjct: 22  RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 81

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  K       ++A ++L + + + + A+ + ++  +P L +              
Sbjct: 82  EDYEFWLKTEKKCCHNTATKYLKNFKKITRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 140

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +   ++  + G  
Sbjct: 141 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 200

Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T  + +  +     K+L      +           +   + + + K  A   G+ K+  
Sbjct: 201 KTKIMCNIPLIEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 260

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H  R   AT +   G +   +    G   V     Y +  DR
Sbjct: 261 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 303


>gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 370

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 104/333 (31%), Gaps = 30/333 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  K + ++R   G++      H       +      +     +++ P +   T+    
Sbjct: 4   KRGDKWVGFYRDVAGKQHTNGNFHRKRDADLWEQEQKAAIRNDTWVD-PSRSKMTVGQWS 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
             +        L   +  S+ S    +++         +I    + + V + +   + S 
Sbjct: 63  ETWIAGRVH--LKPKTLSSYRSLLATRVLPTWNTVPLTRIRHSDVVAWVAAMRAELSASR 120

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             Q    +  +   AVR   +A NP   V  P+      R  T + +             
Sbjct: 121 TRQAYHLLSSMLDDAVRDNRLARNPATGVGLPRLPKSDRRYLTHQQLADLADGC---GPH 177

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIKTQKTGTIITVEL 237
           RL      Y+GLR  +      + +++                     T KT    +V +
Sbjct: 178 RLMVLVAGYTGLRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTHQHRSVVV 237

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQF----SIWFKAKATKAGV-NKSAHGVRKF 292
           P    + L     GK    +    +     +       WF   A   G+   + H +R  
Sbjct: 238 PRFIREDLGRQLAGKAPADLVFASRAGTPLRVQNFRRDWFDRAAHAVGLSGLTPHELRHT 297

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +A+++  +GA+   + +  G  +     + Y  
Sbjct: 298 AASLAIASGASVKGVQSMLGHASAQMTLDRYGH 330


>gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 398

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 103/374 (27%), Gaps = 40/374 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS------- 54
               + P        +  KI Y   +  G+++      ES  +    +A           
Sbjct: 22  RAKSKTPSGEAVPTEKADKIYYIMYRLDGKKVEEKVGRESERMTVAKAAKIREQRINGVT 81

Query: 55  ------TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                   +R           T+  L   Y+ +     L     ++ E+ F   +     
Sbjct: 82  LPNTERRRQRLEKAQAEAGRWTIGKLWKAYKDNN--PGLKG--IVTDENRFKNYLSGFTK 137

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVER 163
               ++TT+ + +       +     +    L  +R +  + V++          L  E 
Sbjct: 138 LSPEELTTQMVDTLRLKLLKSGKKAGTTKNVLELLRRIINFGVKKGLCAWQDPSRLHFEM 197

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           PK         TKE+  +F          +         Y+G+R ++       H+    
Sbjct: 198 PKLNNVKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHIDFEH 257

Query: 222 FSIKTQKTGTIITVELPDGF-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             I              D          +LLA        +       +      +    
Sbjct: 258 GFINIVGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSRMIDMNKQVN 317

Query: 275 AKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           A    AG+ K     HG+R   A+++   G     +      K     + Y    D    
Sbjct: 318 AIKAAAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLED---- 373

Query: 332 GIKNSRRISSVVDS 345
             +  +  +++V +
Sbjct: 374 --EALKNAANMVGN 385


>gi|170697596|ref|ZP_02888685.1| integrase family protein [Burkholderia ambifaria IOP40-10]
 gi|170137483|gb|EDT05722.1| integrase family protein [Burkholderia ambifaria IOP40-10]
          Length = 327

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 99/319 (31%), Gaps = 16/319 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R GK     R+           +  T    +  ++     +  +++    +  TL+ +
Sbjct: 5   RQRDGKWQVRVRRRGFAD-EAKTFNTRTDAERWARSVETEMDRGSFVSRSEAEANTLEDI 63

Query: 75  ISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           I+ Y         +  ++ I   +      +         +T K + +  + R  +  P+
Sbjct: 64  INLYITDVCPTQRSGPDAIIRLRATCR---KTLAKLSMAALTPKAVAAYRDERLKQVKPA 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + I+ L  +  +   A R+  +   NP   + +P       R  + E+  +  +      
Sbjct: 121 TVIRELAFLSAIINHARREWDINIPNPIALIRKPTAPQGRDRVLSIEEEARLLAELVPVG 180

Query: 191 QPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +  +         L +G+R  +        +     +     T       +P     +  
Sbjct: 181 RINVWLLPATILSLETGMRRGELVALRWSDVNLEAQTAHLSMTKNGTARTVPLSKKAV-- 238

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
              +      I+     +         +    +AG+ +   H +R  + T  A       
Sbjct: 239 -ATLAALPRSIDGRVIPVKGLTLHAALRKACARAGIVDFHWHDLRHTAITRMAQKLPNVI 297

Query: 306 ELMATYGWKTVDQAETYTK 324
           EL A  G +++   + Y  
Sbjct: 298 ELAAVSGHRSLAMLKRYYH 316


>gi|118463502|ref|YP_881424.1| integrase fusion protein [Mycobacterium avium 104]
 gi|118164789|gb|ABK65686.1| traSA:integrase fusion protein [Mycobacterium avium 104]
          Length = 382

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 105/350 (30%), Gaps = 35/350 (10%)

Query: 17  RHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           RHG+   +       +                      +         P+    T +   
Sbjct: 22  RHGRGMRWRATYVDDQSREHSRSFGRKVDAQRWLDEVTAAVVTGQYVDPKAGQITFRDYA 81

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             +RK         +SR   E+   +      GD     I    +++ V+  +  P++  
Sbjct: 82  ERWRKMQVQR---PSSRAHIETMLRRHAYPTLGDRQLTSILPSDVQAWVKGLQLAPATVG 138

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  + K A+R   +A NPC   + PK +   I P T E ++  ++      Q  +
Sbjct: 139 VVHGLVSTVMKSAIRDRRLAANPCDGTKLPKVQRPQIVPLTTEQVEAVRAELPAELQALV 198

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------SIKTQKTGTIITVELPDGF 241
                  +GLR  +     V  ++                    T               
Sbjct: 199 TLA--AGTGLRQGECFGLTVDRVRFLERVLTVDRQLVTVAGQAPTFGPPKTRASNRAIPL 256

Query: 242 MKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
            K++A         F             + +  + F   ++A   +A +      H +R 
Sbjct: 257 PKVVADALAAHLAAFPAEPDGLVFTQQGKPITRSTFGYRWRAAVKEAKLPHGTGFHALRH 316

Query: 292 FSATISADAGATAHELMATYGWKT-VDQAETYTK----GADRIRLGIKNS 336
           + A++    G +   + A  G  + V+  +TY+       DR R  I + 
Sbjct: 317 YYASLLIRHGESVKTVQARLGHASAVETLDTYSHLWPDSDDRTRDAIDSV 366


>gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 87/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++           +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIALSRFKDFLKEQYPMNEFSIKPELITKEMMEKFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q       
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLIACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 346

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 101/354 (28%), Gaps = 20/354 (5%)

Query: 1   MTPS--LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M     +R    V ++          +    GR  R     +S  +  Y      +    
Sbjct: 1   MPRKKVIRKERGVFEKVPGSEIWWIRY-YVDGREHREKVGRQSDAVDLYRIRRADALRGA 59

Query: 59  EYINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
           +   + + K    +      +  Y +             +F    + I++  G     +I
Sbjct: 60  KMPANMKNKGVKFEEIGKHALEWYIEHGR------KDVKNFRIRMNIILKDFGHRVAEEI 113

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
               I + ++    +P++   +       FK A     V+ NP   VE+   K   +R  
Sbjct: 114 KPSEIDAWLKKYDWSPATKNCYKNVFGKTFKIAFADGKVSGNPARLVEQRPEKNARLRFL 173

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGT 231
           + E+  + +          +    + L +G+R S+        +      I     K G+
Sbjct: 174 SAEEEAKIREAIDLRCPRHMPELDIALNTGMRKSEQYSLEWGQVSFRRKRILLDETKNGS 233

Query: 232 IITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
              + +    +K              I   K   +      WF      A V N + H +
Sbjct: 234 SREIPMNKTCVKAFEELHADRPHEGRIFQSKYGRDLNDSRAWFDRVVEDAKVSNFTWHAL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           R    +    AG          G KT+     Y   A           ++   +
Sbjct: 294 RHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQA--AIEKLDPKI 345


>gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
 gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 84/276 (30%), Gaps = 24/276 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
             L  ++R+        +V++  ++ +  ++++    +             I    +R+ 
Sbjct: 5   DDLCEQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAF 64

Query: 123 VESRKHTP---SSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +  R+       SA + L+++R   ++      +  +   P +    P+  +        
Sbjct: 65  LTVRRMDGIGNVSAARELSAVRGFLRFVGGEDARVPMLKGPRVKRGLPRPVSPDEAVALA 124

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            D+ +       G++       L  +GLR  ++       L        T K G    V 
Sbjct: 125 GDIAETAREEWIGARDWAVLLLLYGAGLRIGEAMALTGAVLPLGETLRVTGKRGKTRIVP 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAH 287
           L     K +             +           ++        +    + G+    + H
Sbjct: 185 LLPQVRKAMEAYVALCPFGQEKDAPLFRGARGGPLSPALIRRAVQGARGRLGLSDRTTPH 244

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT     GA    L    G  ++   + YT
Sbjct: 245 ALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYT 280


>gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2]
 gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2]
          Length = 329

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHT 129
                +   +   +LA  ++ ++   + Q+     D D     +I  + +R  +   + +
Sbjct: 18  ECARAWLTESA--TLAPKTQAAYLGDWQQLQSHLHDQDVIKPDQIDDRRLRGYLAHCRES 75

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S  +  ++ R L ++  +          +++ PK   +       E M Q     
Sbjct: 76  GLDNRSIARKSSATRWLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIETMNQLLDQP 135

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TI 232
                   + R  FE +  SGLR ++  R  V  +  +    +                 
Sbjct: 136 MVEDELLIRDRCMFELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKTRLVPVGGKA 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
           +        ++   +    +   F+N   Q++      +     A +   G     H +R
Sbjct: 196 LDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLHPHQLR 255

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
              AT   ++      +    G +++   + YT   D  RL 
Sbjct: 256 HAFATHVLESSGDLRAVQEMLGHESLSTTQIYTH-LDFQRLA 296


>gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
 gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1]
          Length = 335

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 89/311 (28%), Gaps = 51/311 (16%)

Query: 74  LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG-- 122
            +  +         L+V++   +    +       ++           ++   HI +   
Sbjct: 5   YLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLG 64

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++  + + ++R  F +  R+  V+ NP  +V  PK      R  + E    
Sbjct: 65  RGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLN 124

Query: 182 FK-------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
                                       +     E L  +GLR S++C      +     
Sbjct: 125 LLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGG 184

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFS 270
              ++  K G    V L    +  +      +       D            ++N+ +  
Sbjct: 185 ELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQ 244

Query: 271 IWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +    +  +    + H +R   AT    AGA    +    G  ++   + YT     
Sbjct: 245 RLLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTH---- 300

Query: 329 IRLGIKNSRRI 339
             L ++   ++
Sbjct: 301 --LDMQALAKV 309


>gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 343

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 39/288 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVES-----RKHTPS 131
            +++ N+++S+   F  ++              +   I+ + +   ++      R  + S
Sbjct: 28  RNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRNASVS 87

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------- 183
           S  Q LT+++   K+   +    I+ C  + +   K    R  T  D ++ +        
Sbjct: 88  SRNQRLTAIKSFAKFIAWKCPDYIDWCHQIRQIPSKKITQRQITYMDREEMEALTEAPLS 147

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237
                 G +  +    +  +G R S+     V  +               K     T  L
Sbjct: 148 NRNHKYGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGKGRHERTCPL 207

Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--------SA 286
              F  LL     G++       N   + M         K  A     +         S 
Sbjct: 208 WPEFWDLLKPLIEGRKPDEFLFLNRFNKPMTRYCIYTLIKKYADYISRDYPNLRNKRPSP 267

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           H +R  +AT   ++G   + +    G  ++D    Y +   D+    +
Sbjct: 268 HTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKAL 315


>gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 402

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R   +      +
Sbjct: 16  YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V     +
Sbjct: 75  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 133

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 134 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 193

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                               F  L Y+G+R  +        +     +I           
Sbjct: 194 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253

Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 254 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 313

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 374 IYAKITNSYKKDASQKFSKLMENVSKD 400


>gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 327

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
            I  +  +      +  S   + S    ++ +  + + ++ITT  IR        ++  +
Sbjct: 52  FIDLFLAAKRIEGCSEKSLKYYNSTIHAMLERL-NKNVKEITTDDIRSYLTEYQSNKNSS 110

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K  +     ++ E ++  +   +E 
Sbjct: 111 RVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTVSNIKETYSDETLELIRDNCNE- 169

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +        +                  V         L   
Sbjct: 170 IRDLALIDLLASTGMRIGELVLLNRNDINFYERECVVFGKGDKERVVYFDARAKIHLKNY 229

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              +                ++         +    + G+     H  R+  AT++ D G
Sbjct: 230 LDSRTDDNNALFVTLKAPFNRITIGGIETRLRTLGKQLGLSKVHPHKFRRTLATMAIDKG 289

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 290 MPIEQLQQLLGHRRIDTTLQYA 311


>gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 286

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126
             +Y K+  +     N+  S+    +  +R   D         +  +      +S +  +
Sbjct: 5   FEDYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRK 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
            H PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ 
Sbjct: 62  NHKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  ++     E LL +G+R S++    ++ ++ +    K +  G   +        
Sbjct: 122 TVHQFGKTRDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNS 181

Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                     +    +            K+         +  A  AG+    H +R F A
Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
               D G   +++    G + ++    Y K
Sbjct: 242 QTLIDKGLNIYDVQQLLGHQRIETTLRYKK 271


>gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612]
 gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 40/288 (13%)

Query: 85  GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGV-------- 123
              + N+ IS+ +   Q  R                      +  K I+           
Sbjct: 20  RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79

Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                 R +  S+  +   +++ L+ +     +    +P   +E PK K+      T ++
Sbjct: 80  SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRDPVYLTLDE 139

Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                +        +        L  G+R S+     ++ +Q     I  +       + 
Sbjct: 140 ALSLLNAVDGEFYERDLAIITLFLNCGIRLSELTNLKIEDIQEETIHIVGKGN-KERNIR 198

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV---NKSAH 287
           L D  ++ L      +                 ++        K    KAG+     S H
Sbjct: 199 LNDACVETLEAYMAVRPEDTDVPYVFLSKRKTPLSNRTVQSMVKKYVLKAGLNADKISVH 258

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
            +R  +AT+    G      L    G +++   E YT    D +R  I
Sbjct: 259 KLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAI 306


>gi|296161353|ref|ZP_06844160.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888339|gb|EFG68150.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 354

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 94/330 (28%), Gaps = 25/330 (7%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++  + G      R   G+RIR      +      Y   L     +++ +        T 
Sbjct: 4   RKDKKSGIWHLDIRTPGGQRIRRSTETSDRKAAQEYHDRLKADLWRQDKL--GETPDRTF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--------SGV 123
           +     +               +   + +    K      R +T   I          G 
Sbjct: 62  EEAAVRFLHECEGQ----RDYSTKLRHVEYWRAKFAGRPVRSLTADDIIDALPAQNLRGK 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T S+  +++++++ +       E++   P L       + +    W   ++    
Sbjct: 118 ARQPLTGSTRNRYISTIKRMLNLCAEWEWIDRVPKLPR---YHEPDVRVRWEPPEVITAL 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
               +    R A    + +G+R  +        +    +   I  +   +     +P   
Sbjct: 175 IQALQLPWMRDAAIVAVATGMREGELFGLTRSQVDLAQHNAWITHESAKSKRARSVPLND 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV-NKSAHGVRKFSATI 296
             +       K    +   + +    +        F+      G+ +   H +R   A+ 
Sbjct: 235 DAISVFARRMKTAKSLMFTRGEGLEKRIQQIDTRDFERACEIVGIEDFHWHDLRHTWASW 294

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    GW+T++  + Y   A
Sbjct: 295 HVQRGTPLMVLKELGGWETIEMVQKYAHLA 324


>gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7]
 gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 98/320 (30%), Gaps = 51/320 (15%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121
           + K    +    ++ +     +L   +   +E       +I    G     KIT + I++
Sbjct: 63  QSKAIKFEVFAEQWFEEYAKPNLRNTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119

Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            V S               P +    L+ +  +F +AV+   V  NPC  V  PK     
Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCSKVTLPKNNQAE 179

Query: 171 IRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------- 222
            + +T E +Q+F +    E  + R  F  +++SG R  +      + +            
Sbjct: 180 KKIYTPEQVQRFLTLLNDEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFEHNIISIRRT 239

Query: 223 ----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FIN 258
                     +  T+   +  T++ P   M +L      ++                +  
Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVETDRLYTK 299

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +   M       W      K  +     H  R   A++  + G     +    G  TV 
Sbjct: 300 WNGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359

Query: 318 QA-ETYTKGADRIRLGIKNS 336
                Y    D  R  +  +
Sbjct: 360 TTSNIYCHMLDEARAKVSEA 379


>gi|124514510|gb|EAY56023.1| putative phage integrase [Leptospirillum rubarum]
          Length = 346

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 101/334 (30%), Gaps = 31/334 (9%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  + +  G  ++    +      A+  ++     +  +++    + TTL   +
Sbjct: 6   KRGDLQWRVKIRRRGFPLQTRTFNTKAEAEAWARSIETEMDRGSFVDRSEAENTTLSEAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFE--SYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTP 130
             Y        ++ + + S++     + +     G     +I    I    + R      
Sbjct: 66  DRY-----AREISPHKKGSYQELCRIENLKTHSLGKRFIAQIRGSDIALYRDERLKMVAA 120

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWS 187
           ++    L  +  LF+ A ++  +             K       R    E+ +  +    
Sbjct: 121 ATVRLELAIISHLFEIARKEWGMESLNNPVRIVNLPKKSESRDRRLLLGEEEKILEFCEI 180

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL 245
            G          L +G+R  +      +H+     +  I   K G   TV L    +++L
Sbjct: 181 YGGDLPHIVRLALETGMRRGEIVGMTWEHVNLKKNTVLIPKTKNGEKRTVPLSKKAVEIL 240

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKA---------TKAG------VNKSAHGVR 290
                          ++    T F                  +        +N + H +R
Sbjct: 241 KGLSRRIGGRVWEITEEHSVTTAFRRAISRARSTYEKECQEKRIKPDPSFLLNLTFHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             + +   + G    ++ A  G KT+     YT 
Sbjct: 301 HEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334


>gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 327

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 95/304 (31%), Gaps = 22/304 (7%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +    PK E +   +     ++  I  +   A    +   +   +  ++    ++  
Sbjct: 8   KRIVKRRLPKVELLKVDKTDSLEVEQTIKIFSHIAKQEGMRERTISDYAKFYRYFTKEVE 67

Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D RK+   HI   ++S      +P +    L+ ++ LF+   + EY+  NP ++  + 
Sbjct: 68  VTDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYIKENPAVNFSKL 127

Query: 165 KRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +     I  +    +++           G +  +A   +L+ G+R ++     +  +  +
Sbjct: 128 RTDESKIYTFNNSQIKRLFRVVDTTSYAGFRDYVAMLLMLHCGMRVNEVAALEINDIDFD 187

Query: 221 IFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------F 269
              I       K     ++ +    M  +         +F       +            
Sbjct: 188 NGVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVKHVFLTQDGRRLDNDII 247

Query: 270 SIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                     +G+      S H +R   A      G + + LM   G K +     Y + 
Sbjct: 248 RKRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRM 307

Query: 326 ADRI 329
               
Sbjct: 308 TSEE 311


>gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 312

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 84/293 (28%), Gaps = 36/293 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH---TP 130
            + +       LA  +   + +   ++   + +      ++   H+R            P
Sbjct: 14  AFLQHLQVQRRLAPRTLTMYGAALLRLEHAAAEQQLALTQVRPPHVRRWAAMLHGQGLGP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQQFKS 184
            S    L + R L++W  R+  V+ NP   +  PK      +    +      D     +
Sbjct: 74  RSIAIHLAAWRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADHHDPAT 133

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------IKTQKTGTIITVE 236
                 +     E L   GLR ++          +                K      V 
Sbjct: 134 DPLLDLRDHAMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQVLGKGSNRRIVP 193

Query: 237 LPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
           +    +  +      +           F++    ++  +Q       +A  AG+  +   
Sbjct: 194 VGPPAVAAVQAWLAVRHQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQSAGLTSHVHP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H +R   A+    +      +    G   +   + YT      RL  ++  RI
Sbjct: 254 HMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYT------RLDYQHLARI 300


>gi|317405722|gb|EFV86018.1| phage integrase family Site-specific recombinase [Achromobacter
           xylosoxidans C54]
          Length = 375

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 112/358 (31%), Gaps = 31/358 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  T++  
Sbjct: 6   KTSSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPAERMTVEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           ++ Y K       A +++         IIR  G +    +  + +    + R        
Sbjct: 65  LTRYLKEVTPTKRA-STQAGEHKKAQVIIRHLGKYSLAALNAEIVAQFRDMRLAGDPDKN 123

Query: 127 -KHTPSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180
            K  P S       L  +  LF  A+++  +    NP  ++ RP   +   R  T E+  
Sbjct: 124 GKLRPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGSGRNRRLTPEEQN 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
           +      + S P   +   +   +G+R S+     ++ +      ++    K  +  TV 
Sbjct: 184 RLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERRVVRLEHTKNSSPRTVP 243

Query: 237 LPDGFMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           L     ++        L         F             F   +      AG+ +   H
Sbjct: 244 LTTEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKAWTDAKRAAGLEDFRFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            +R  + +   +AG +  E+ A  G K++   + YT    R    ++   R++    S
Sbjct: 304 DLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVQKLDRLARRAPS 359


>gi|313895830|ref|ZP_07829384.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975255|gb|EFR40716.1| site-specific recombinase, phage integrase family [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 97/330 (29%), Gaps = 28/330 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G      +             +  F     + L      R+   SP     TL+ L  
Sbjct: 8   KRGTWFAKIKYTDW-AGNKKETTKRGFAKKKDAQLFEQEFLRQKTESP---SMTLESLYH 63

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
            Y +      +   +  + ES F ++I+   G +   KIT K IR         +++P+ 
Sbjct: 64  LYMEDLRHR-IRPTTYSTKESIFSNRILPHLGQYPCDKITPKIIRQWQNLLVADEYSPTY 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +  LF +AV+   + +NP  SV+   + +     +   D              
Sbjct: 123 LKMINGQLVSLFNFAVKYYGLYVNPMKSVDTIGKSSAEAMQFWTVDEFNRFILTQSSPLH 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVE 236
           +  F  L ++G+R  +               ++ QK+                     V 
Sbjct: 183 KTIFMLLFWTGMRVGELLALTYADFDLEKKIVRVQKSYIRLKGKDLIGPPKTPGSNRVVS 242

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
           LP   +  L       +    N     +            A KAGV     H +R   A+
Sbjct: 243 LPSFLVDNLMSFFESLKPLDPNARLFIVTRASIR-RLHTGAKKAGVKLIRIHDLRHSHAS 301

Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTK 324
                G    E+    G   ++     Y  
Sbjct: 302 YLIHIGVPIMEVSKRLGHDKIETTLRTYAH 331


>gi|285019408|ref|YP_003377119.1| shufflon-specific DNA recombinase [Xanthomonas albilineans GPE
           PC73]
 gi|283474626|emb|CBA17125.1| putative shufflon-specific dna recombinase protein [Xanthomonas
           albilineans]
          Length = 364

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 107/341 (31%), Gaps = 33/341 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  T++  
Sbjct: 6   KTPSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGIYIQRAPSERMTIEDA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            S  S   +   +++  G +    +T + I    + R        
Sbjct: 65  LKRYLSEVSPTK-RQASADSDARHAKPLMQNLGRYSLAALTPELIAKYRDDRLAGLDRKD 123

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176
                     +P++    L  +  LF  A+++  +    NP  S+ RP       R  T+
Sbjct: 124 AKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTR 183

Query: 177 EDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228
           E+  +        S P L +     L +G+R S+        +  +    +      T  
Sbjct: 184 EEEIRLMVAVDAHSNPMLGWIVRIALETGMRSSEITGLRRSQVDLDRRVARLQETKNTMS 243

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN- 283
               +TVE    F + L       +T  I         K  A QF+  +      AG+  
Sbjct: 244 RTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRRAYQFNPIWMRIKKDAGLPD 303

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 304 FRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTH 344


>gi|238917697|ref|YP_002931214.1| hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750]
 gi|238873057|gb|ACR72767.1| Hypothetical protein EUBELI_01777 [Eubacterium eligens ATCC 27750]
          Length = 364

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 100/332 (30%), Gaps = 35/332 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           +  Y++   G R +               AL      +   +       + K  +  Y  
Sbjct: 14  VRTYYKDLTGARKQK----TKRGFAKKSEALEWERNFKLKEDQSIS--MSFKSFVDIYLT 67

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK---------HTP 130
                 +  N+ ++ +   + +I+   G      I T ++                  +P
Sbjct: 68  DLEPK-IKRNTFLTKKHIIETKILPYFGKRKLDDIRTSNVIQWQNEIMKLKKDNGELFSP 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189
           +        +  +   AV    +  N         ++    +  WT+E+ Q F     + 
Sbjct: 127 TYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEEFQAFLECVVDK 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
                AFE L ++G+R  +     +        +++  K+                    
Sbjct: 187 PISYYAFEILYWTGIREGELLALTLGDFNFEKKTLRINKSYQRLEGKDVITDQKTPKSNR 246

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           T+ +PD     +           +++    ++ +         A  AGV +   HG+R  
Sbjct: 247 TIAMPDFLTIEMEDFIKNIYGIKMDDRIFTISKSYLHHEMDRGAKLAGVKRIRIHGLRHS 306

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
             ++  + G +A  +    G ++VD    Y  
Sbjct: 307 HISLLINLGFSALTIGERVGHESVDITYHYAH 338


>gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
 gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201]
          Length = 378

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 92/345 (26%), Gaps = 34/345 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-G 85
                      P        + +         E   S       L   + E+R       
Sbjct: 31  HPTEPAPSAERPAGPARTAQHAAQHRPPARTSEDTGSSTPPVGPLAPYLPEFRAHLSLER 90

Query: 86  SLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
           S + N+  S+ S      + + + G      +    +R  +  R       SS  + + +
Sbjct: 91  SRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQRGLARSSVSRGIAA 150

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------------- 185
           +   F+WAV  + +  +P   +  P+             + +                  
Sbjct: 151 VHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGDVALGPHEEESD 210

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
            +  ++     E L  +G R S+       H+      +           V   +     
Sbjct: 211 AALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQRRVPYGERAGDA 270

Query: 245 LAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
           LA+    +            F+     +++                    +  H +R  +
Sbjct: 271 LAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTSARGPHSLRHSA 330

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           AT   D GA    +    G  TV   + YT    +RI+     + 
Sbjct: 331 ATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAH 375


>gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 88/356 (24%), Gaps = 48/356 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R G+ + Y+   +G R    +        AY  AL     K+      R +         
Sbjct: 6   RDGRWMVYYTDVNGSRRDKSFGRG---DNAYAEALAFDQEKKSASKQSRGEVSSSVSIES 62

Query: 68  ----------------PTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD 110
                               K L  +Y +          N++   +   +Q     GD  
Sbjct: 63  EQPVQSEDVPVNTSPFEIIFKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKV 122

Query: 111 YRKITT-------KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             ++T          I      +   P    +  ++   +  +F + V      +NP   
Sbjct: 123 VNEMTYVDDMVPFIKIFQNTPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRG 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             +     E  R          +      S  R A E     G R  +S    ++    +
Sbjct: 183 RRK---SKEKPREIQLTVEDIKRIMECAESHIRWAMEVCFNLGTRPGESELLALKWEHID 239

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKA 277
                 +   +             L      +     +         +  +    F+   
Sbjct: 240 FEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKGFRGAC 299

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
            +A +      + +R   AT     GA    +    G   +      Y    +  +
Sbjct: 300 QRANINYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLEGEK 355


>gi|153815915|ref|ZP_01968583.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756]
 gi|317500681|ref|ZP_07958899.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089843|ref|ZP_08338736.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846734|gb|EDK23652.1| hypothetical protein RUMTOR_02160 [Ruminococcus torques ATCC 27756]
 gi|316897875|gb|EFV19928.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403540|gb|EGG83098.1| hypothetical protein HMPREF1025_02319 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 43/357 (12%)

Query: 18  HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G       Y      RR +             +         +   + +      + + 
Sbjct: 9   NGTWYVMARYVNWKGERRQKCKRGFATKKEAQEW--------ERMFQLQNASDLDMSFEA 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126
               Y +      L  N+ ++ E     +I+   G     +I+TK I +           
Sbjct: 61  FTELYIRDVKTR-LKENTWLTKEHIIRTKILPYFGKLRISEISTKEIITWQNELLAYRDE 119

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182
           K  P S          +  +F  AVR   +  NP   V     +       WTKE+ ++F
Sbjct: 120 KKKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKVGNMGSEEHKEMLFWTKEEYKKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AFE L + G+R  +              +++  K+             
Sbjct: 180 SFEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   +++P    + +             +    +  +         A  AGV +  
Sbjct: 240 KTKKSNRMIKMPKFLCEEMQEYLSMLYGLKKKDRIFTVTKSYLHHEMDRGANAAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            H +R    ++  D G +A  +    G +++D    Y       +   + + R+  +
Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDL 354


>gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 382

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 94/334 (28%), Gaps = 50/334 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           GRR  L    +                 R  I   + +  T + L + Y  +     L  
Sbjct: 39  GRRFILSRTGKRGKAKL----------SRTSIEVTQIETYTFQELFNIYMFAKEAEGLVR 88

Query: 90  NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH----------------- 128
            +  + + YF      +     D     + T  IR  +   K+                 
Sbjct: 89  KTLENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKS 148

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
              + S     +  MR  + + V +EYV +NP   ++  K   + I   + + ++     
Sbjct: 149 VGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQ 208

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL 237
                  G +  +    L  +G+R S++     + +      I       K      V +
Sbjct: 209 PNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKNRKTRYVPI 268

Query: 238 PDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289
                KLL      +        F       ++  +F    K     +G+     S H  
Sbjct: 269 SQKTSKLLRELLVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKGVRVSPHTF 328

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   A            L    G  +++    Y 
Sbjct: 329 RHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYI 362


>gi|304438134|ref|ZP_07398077.1| phage integrase family prophage lambdaba04, site-specific
           recombinase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368907|gb|EFM22589.1| phage integrase family prophage lambdaba04, site-specific
           recombinase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 388

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/399 (11%), Positives = 114/399 (28%), Gaps = 67/399 (16%)

Query: 1   MTPSLRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M+  +R+         + GK   Y F      R        +T   A+ + +   T  + 
Sbjct: 1   MSSKIRI--------RKRGKTYSYSFDISKNPRRMKEKGGFATEDDAFDAGVKAYTDWKN 52

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                  +   L+  ++ + ++    ++   +  +++S  +  I+   GD   +++  + 
Sbjct: 53  GNIGITSEKVKLRDYLASWLENVVRPNVKRTTYQNYKSEINTHILPIIGDVYVQELRPRD 112

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           + + +        +  +  Q  T + V  ++AV    +  +  ++     R         
Sbjct: 113 VDAWLMQLARAGMSHGTIQQTKTVLSVALRYAVYPAELISSNPVTGIPIPRSAPRKVIER 172

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIF 222
                +  +     S+     + + ++G+R  +        +               + +
Sbjct: 173 TVITPEQFAAIPTDSRYYAVMKLMYHTGMRIGEVLGLTWDDVDLSTGEIHVVRQRNQHKY 232

Query: 223 SIKTQKTGTIITVELPDGFMKLLA------------------------------------ 246
               +   +I +       M  L                                     
Sbjct: 233 FETPKTETSIRSFYTDPNLMAFLQALKREQAKNEMRRGEAYQLVYEDVQNGGALVMLPKK 292

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
           +              +           K   ++ G+N  +H  R   AT   +AGA   +
Sbjct: 293 IHAPHNYVHRSLICIKPDGTIYTHEAVKNAVSRLGLN--SHSFRHTHATRLIEAGAKPVD 350

Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           + A  G       +  Y    + +R   + +R    +VD
Sbjct: 351 VAARLGHADATITQNLYAHDTEEMR--KETARIFGGLVD 387


>gi|295107834|emb|CBL21787.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 363

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 103/356 (28%), Gaps = 41/356 (11%)

Query: 18  HGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +G       Y      R+ +      +         +         + +      + +  
Sbjct: 9   NGTWYVMARYVNWKGERKQKCKRGFSTKKEAQEWDRM-------FQLQNSSDMDMSFEAF 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------K 127
              Y +      L  N+ ++ E     +I+   G     +I+TK + +           K
Sbjct: 62  TELYIRDMKSR-LKENTWLTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLAYRDEK 120

Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK 183
             P S          +  +F  AVR   +  NP         +       WTKE+ ++F 
Sbjct: 121 KKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKAGNMGSEEHKEMLFWTKEEYKKFS 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +      AFE L + G+R  +              +++  K+              
Sbjct: 181 FEMMDKPVSFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTPK 240

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                  +++P    + +             +    +  +         A  AGV +   
Sbjct: 241 TKKSNRIIKMPKFLCEEMQEYLQMLYGLKKKDRIFTVTKSYLHHEMDRGAKAAGVKRIRI 300

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           H +R    ++  D G +A  +    G +++D    Y       +   + + R+  +
Sbjct: 301 HDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDL 354


>gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972]
 gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972]
          Length = 347

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 101/330 (30%), Gaps = 29/330 (8%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +  H K      Y +   G+R+R           A+   +     ++ ++   +    TL
Sbjct: 7   KDGHKKPWLCECYPKGRTGQRVRKR-FATKGEALAFEKFIMKEVDEKPWLGDKKDLR-TL 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + L+  + K  H  +L    +  +      I+ + G+    K T K        RK    
Sbjct: 65  QDLVELWYK-LHGQNLKSA-KKVYPR-LRIIVEELGNPFAIKFTAKDFVHWRSGRKAKHR 121

Query: 132 -------------SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                        +    L  +R +F   +   E+    P  SV++       +  ++ +
Sbjct: 122 HMEPGTWKAISAPTNNLDLRYLRAVFNELISLGEWTQPTPLASVKQIPVNESEMGFFSND 181

Query: 178 DMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           D+       S+  + +   L  +  L +G R S++    +  +     +    K+    T
Sbjct: 182 DITALFDRISKSKRAKEFELVCKICLSTGARISEANNLRLSQITQYKITFVDTKSKKNRT 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           V + +     L       E   + ++         +             ++ H  R   A
Sbjct: 242 VPITEKLYNELMAFERTGEKDRLFSNCLY----GIAYIVDQTFPDLPDGQNTHVFRHTFA 297

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   +AG     L    G   +     Y  
Sbjct: 298 SRFMEAGGNILVLQKILGHSDIKMTMRYAH 327


>gi|161504575|ref|YP_001571687.1| hypothetical protein SARI_02688 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865922|gb|ABX22545.1| hypothetical protein SARI_02688 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 107/378 (28%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F    G+R +      +    A                       T +    
Sbjct: 6   RGETWYASFTLPDGKRFKQSL-GTTDKRQATELHDRLKAEAWRVSKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGIQLKDITETKIYSAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L +    +E+  ++    V+ P+ K
Sbjct: 121 MMEEACRKKGKQPPVFKPKPAAIATKATHLSFIKALLR-TAEREWKMLDKAPIVKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + IR     + ++      E  +     EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPEPLKS--VVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237

Query: 228 KT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                               ++  ++ +    +        +     +   +      + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDRTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y   A    
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I S+ D+  P
Sbjct: 357 -LTEHARQIDSIFDTSVP 373


>gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A]
          Length = 356

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREY 60
              LPP +     R+     Y     G+   L          A        +G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQTNIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 368

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 117/354 (33%), Gaps = 46/354 (12%)

Query: 16  TRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            R+GK     +            R+      +   +    S L       E +   R   
Sbjct: 5   KRNGKWYIRGKVKLEDGSFKDYHRVARGCKLKKEAMKIEDSFLAKYNEDLEQM---RASN 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            T K L   Y +     + + ++  + +  FDQ+     D     I +K I+  +ES   
Sbjct: 62  ITFKELTEMYLREKQGSTKS-STLATDKYMFDQMNELY-DKRINLIRSKTIKDFIESYNT 119

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQF 182
             +  S   +  T +  LF +AV+Q  +  NP     + +RP    E ++ +T ++ ++F
Sbjct: 120 PEYKLSYVNKMRTYLNKLFSFAVKQNLIERNPVSSIPNFKRPDELKEEMQFYTPDEWKRF 179

Query: 183 KSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NNIF 222
              + +           L Y G+R  +      +                          
Sbjct: 180 VQAFPKDDIMYYTICCTLYYMGMRRGEVLALNRKDDVDIVKGTIRVNKTVSQYVSGQRYV 239

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKA 275
               +   +   +++P+  ++++       ++        F+    Q +     +  F  
Sbjct: 240 VTPPKTKNSYRVIKMPEEELQIMKKYLEWYDSCPGASADGFLFGMDQPIIPKLLNKRFHR 299

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A  AG+ +   H +R   AT+  + GA    +    G    +  +TY+   + 
Sbjct: 300 VADAAGLPQIRIHDLRHSHATLLINHGANIKAIADRLGNTVEEVLKTYSHLFNE 353


>gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905]
 gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327]
          Length = 326

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    +++ + +      R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 358

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 60/370 (16%)

Query: 13  KERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  TR    +Y ++      ++              + + L       E  ++ R    T
Sbjct: 5   RRTTRGTYEVYGYKTKLDGTKQRFSKTFKTRAEAKRFHAEL-------ELGSAERSSQIT 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  LI EY   A     +  +         +   K        IT K I + +E R    
Sbjct: 58  LSALIDEYIVEATSQKRSKRTEEIRLRRLQR--DKLATRALSSITKKTIENYIERRLQER 115

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   +PS+  + LT +  +F++A++ E   +NPC  VE+P+      R  + ED++
Sbjct: 116 AKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEKPREPEHRERVASGEDIE 175

Query: 181 QFKSFWSEGSQ---------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
           +                      AF F   +G+R  +  +     + +N+  +  + T  
Sbjct: 176 KLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWIDDNVLHVPAEATKT 235

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282
            +   V L     ++L +    +    I       N       F+    +AG+       
Sbjct: 236 LSRRDVALSARAREILKLVMELEYEPRIFGGLNDHNRDTL---FRKVRDRAGLGPEYDSQ 292

Query: 283 ------NKSAHGVRKFSATISA----DAGA---TAHELMATYGWKTVDQAETYTKGADRI 329
                   + H  R   AT +A    + GA       L    G K +   + Y + +   
Sbjct: 293 NRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQTGHKDLKMLQRYYRAS--- 349

Query: 330 RLGIKNSRRI 339
               + ++R+
Sbjct: 350 --AEEIAKRL 357


>gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii]
 gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii]
 gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida]
 gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii]
 gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae]
          Length = 337

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|306823936|ref|ZP_07457310.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|309802320|ref|ZP_07696427.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552934|gb|EFM40847.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|308220920|gb|EFO77225.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 367

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 100/344 (29%), Gaps = 32/344 (9%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +    T+ G   Y   +R     +              Y  A   +         P    
Sbjct: 3   IYPYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDY-LARMTTYISDNDYIDPNAGK 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           T +      + K      +        E  +   +    G+ +   I    I++ V    
Sbjct: 62  TLVCQFADTWLKGKK-NVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSELA 120

Query: 128 HTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S+ I       ++ +   AVR   +  NP    + P+++ +     T   +      
Sbjct: 121 KKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTHLTPAQVIDLAHA 180

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
                  +     L + GLR  ++    V+H+      ++ + +                
Sbjct: 181 ---AGTYQALILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTW 237

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN-K 284
               V +PD  M  +     GK    +          +  + +   W+      +GV   
Sbjct: 238 EVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPTL 297

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           + H +R  +A+I+  +GA    +    G K      +TY    D
Sbjct: 298 TCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFD 341


>gi|187939931|gb|ACD39068.1| phage integrase [Pseudomonas aeruginosa]
          Length = 400

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 102/368 (27%), Gaps = 26/368 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  L    E T   A        A       
Sbjct: 27  LVPGFLCKITPVGRKVFMLQYRTNAGERRKPALGLFGELTVEQARSLAQEWLAQVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  ++  T++ L   + +         ++R+ ++   D+ II   G      +  
Sbjct: 87  PAADKAEARQAPTVEELCKRFMEDYSKKRNKPSTRVGYQGVIDRCIIPLLGRKKVHDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +   +E   +  + A +  + +R +F  A    Y           P            
Sbjct: 147 PDVAGLMEKLSYKQTEANKAFSILRKMFNMAEVWGYRPDGTNPCRHVPMFPAGKSTHLIS 206

Query: 177 EDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +D                 E     LA         R S+      + +      +    
Sbjct: 207 DDDMGKLFRQLDKIEVEGLENYVIPLAIRLQFEFAARRSEIVTLEWEWVDLENRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-V 282
           + T    +        L                  +  Q +   ++   +      AG  
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGNPYVLPSPRHPAQHLTTGEYYGGWCRVLKAAGAT 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK-NSRRIS 340
           +   HG+R  SAT  A++G      MA    KTV     Y    D  +R   +  + R  
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRYVHTEDDPVREAAELVANRRK 386

Query: 341 SVVDSDDP 348
           ++  +  P
Sbjct: 387 AITGAKQP 394


>gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 291

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 16/267 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           K L+ +Y         +  +   + S     +    D  +  IT         S   K +
Sbjct: 6   KELVRKYLDFHSSK--SKETLKRYRSSLHIFMEFFPDKSWDDITVDDAIFFYNSYLSKVS 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             + ++ L  +     W V  +Y+  N      +  K +  G      E+         +
Sbjct: 64  KDTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSNIK 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
                +   F+L +G+R S+     +  +        I+  K      V + D     L+
Sbjct: 124 DYLYYVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNKDRMVFICDELYPFLS 183

Query: 247 MTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                +E                  + +  ++  + +  +    V  + H +R    T++
Sbjct: 184 NYIKHREMLNPKTDKLVNKNGYKLSEGHICEYRDYLREVSKGLSVKVTPHVLRHTFGTLA 243

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G     L    G  ++     Y  
Sbjct: 244 CKHGMNLQVLSKLMGHSSMAITSKYLH 270


>gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 279

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 9/260 (3%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           +++K       + NS  ++        +  G   D   +  K + + +    H  + A  
Sbjct: 9   DFQKLLKIKRYSENSINTYLGLIKSFHKYVGFQIDLISLENKQLLAIIIQIVHDKNLAYT 68

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +    K   R+ Y        V   +R +      + ++++      +   + +  
Sbjct: 69  THKQLCAALKLFYREMYSRDIDFSPVYPTRRPSPLPNIISTKEVKAISESHN-NIKHKAM 127

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
              +   GLR  +     ++ +    N   I++ K      + LP+    L     +   
Sbjct: 128 LTAIYALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFREYYLQYR 187

Query: 254 TFFINNDKQ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
                   +   K         FK    KAG+NK  + H +R   AT   D G     + 
Sbjct: 188 PKNYLFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYATHLMDRGTDVRIIK 247

Query: 309 ATYGWKTVDQAETYTKGADR 328
              G  ++     YT    +
Sbjct: 248 ELLGHSSIKTTLIYTHVTQK 267


>gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19]
 gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19]
          Length = 390

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R   +      +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                               F  L Y+G+R  +        +     +I           
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 405

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 83/321 (25%), Gaps = 14/321 (4%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPRKKPT 69
           +T ++ + G      + G     RL           A+   +     +       RK   
Sbjct: 1   MTIKQVKSG-WQVNVQPGGRGAKRLKKTFAKKADAEAWKRHVQAKVQETPEWVPARKDAR 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            L  L+  +          +NS    +     +    G+    + T          R   
Sbjct: 60  LLSELVELWY---RLHGSGLNSGEDTKRRLLAMCEAMGNPRADRFTADMFAEYRAQRLAA 116

Query: 130 PSSAIQF---LTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +A         MR +F    R +++   NP   +   K +   +   T   ++     
Sbjct: 117 GITANNMNREQAYMRAVFNELKRLKQWKRANPLEDLRAFKIQENELTFLTLPQVRTLLDE 176

Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
              G      L     L +G R  ++    +  ++N +      K+     V +     K
Sbjct: 177 LPRGRNVHVTLVSMVCLATGARWGEAEGLRISQVRNGVIQFVKTKSSKARAVPISKSLAK 236

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            L                     + F    +         +  H +R   A+     G  
Sbjct: 237 GLHAHFRTHGEGERIFGTAW---SAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGN 293

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G  ++     Y  
Sbjct: 294 ILSLQRALGHHSLTMTMRYAH 314


>gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 292

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 18/265 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L           +L+ N++ S+        R         +  + IR+      E RK  
Sbjct: 4   LRQRMLHDMQIRNLSDNTQKSYLLQVSSFARHF-RRSPEMLGPEEIRAWLIYLREERKLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S    + ++R L++  +++++           P++        + E++  F       
Sbjct: 63  PASLSPAIGALRFLYRVTLKRDWSD----EDFPLPRKPVRLPVVLSLEEITTFFDSI-PS 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPDGFMKLLAM 247
            + R        +GLR S+     V  + +    I+  +        V L    +++L  
Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEVLRT 177

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                         +     +  T  +        ++G+    + H +R   AT   + G
Sbjct: 178 YWQDAHPRDWLFPGDIPGHPITRTAVARICALARQRSGITKPVTPHSLRHAFATHLLETG 237

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G +++     Y + A
Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262


>gi|299536395|ref|ZP_07049707.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727879|gb|EFI68442.1| tyrosine recombinase xerC-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 399

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 105/369 (28%), Gaps = 48/369 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +  P +       G+ ++ +R        +    + +      +AL      +     
Sbjct: 5   KSKKEPEIYYYFNAKGEKLWMYRHKFYNAAGIRKEKKKSSFKTEKAALKALLEVKAATLQ 64

Query: 64  PRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY---RKI 114
              K       T+   + ++ +        V +    +           G +      +I
Sbjct: 65  GETKHIEYDNLTVGQWLDDWLEMNK-NKWKVTTMKQRKLAVKNHFKPLLGHYKLQKLDRI 123

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGI 171
           T + +   +  +K  P +   F +  ++    AV +E +  N    V          +  
Sbjct: 124 TYQRVFIDILEQKFKPGTVNLFHSIFKIAINAAVEEELLIRNRFTKVVIKNEFELTKQTY 183

Query: 172 RPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KT 226
              T E++  F       E           +Y+G+R  + C    Q++      I   +T
Sbjct: 184 NYLTIEELNIFLHTAKKYEDITGYTFLLVAVYTGMRKGEICGLQWQNIDFKNNIITIERT 243

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------------- 264
           +      T +  + + ++L    +  +        +++                      
Sbjct: 244 RDDIGTRTPKTKNSYRRILVDDLVIDQLKKYQVWCKQILLKHGKQLDDQLFVFINTFNNL 303

Query: 265 -NATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
            +       F+    KAG+         + HG+R   ATI  ++G     +    G    
Sbjct: 304 LHGAAIHKMFRDTILKAGILNNDGEPKITFHGLRHTHATILLNSGQNVKAIAQRLGNTPA 363

Query: 317 DQAETYTKG 325
              E Y   
Sbjct: 364 MIYEIYGHV 372


>gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 297

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 83/269 (30%), Gaps = 23/269 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
            +     + A ++   +                 K+  +H+R               +  
Sbjct: 9   LEELQRRNYAQSTVKGYLRIVQDFAEHFHQQP-DKLGPEHLRQYQAHLFRDKHLNAGTVQ 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           Q++ ++R  F   +++ Y+       +  PKR  +     + +++       +     + 
Sbjct: 68  QYVAALRFFFNKTLKRHYL----LDDIPMPKRHRKLPEILSPDEVAL-LIGSASNLLHQT 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               L  +G+R ++ CR     +  Q  +  I+  K G    V L    ++ L +     
Sbjct: 123 MLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWM 182

Query: 253 ETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           +                  +         +  A +AG+  + S H +R   A+   +AG 
Sbjct: 183 KPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGT 242

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   ++    Y     R  L
Sbjct: 243 DLRTIQMLLGHAKLEHTAMYLH-LSRKHL 270


>gi|170767791|ref|ZP_02902244.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
 gi|170123279|gb|EDS92210.1| site-specific recombinase, phage integrase family [Escherichia
           albertii TW07627]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F   +G+R +           A                       T +     + +
Sbjct: 10  WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                     S    +S     ++       R IT   I S ++   +            
Sbjct: 69  EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124

Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                              ++    L+ ++ L + A  +E+  ++    ++ P+ K + I
Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
           R     + Q+      E  +     EF L +GLR S+      Q +         + +  
Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275
           K+   I V L D   ++L         +     +                    +  +KA
Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              +AG++    H +R   A+    AG     L    GW++++    Y        L   
Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPD 355

Query: 335 NSRRISSVVDS 345
           +    +  +DS
Sbjct: 356 HLTEHARQIDS 366


>gi|155024|gb|AAA72104.1| integrase [Shigella sonnei]
          Length = 337

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYFHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|88705870|ref|ZP_01103579.1| prophage integrase [Congregibacter litoralis KT71]
 gi|88699941|gb|EAQ97051.1| prophage integrase [Congregibacter litoralis KT71]
          Length = 399

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 103/365 (28%), Gaps = 30/365 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--- 59
           L P    + T  G+      Y    G  R+  L    E T   A   A +     R    
Sbjct: 27  LVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVDQARSLAQSWLADVRRGGD 86

Query: 60  --YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+K L  ++ +         +++  ++   D+ II   G F  + +  
Sbjct: 87  PGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRFKVKDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++   + P  A + L+ +R +F  A    Y           P            
Sbjct: 147 ADVATMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRPDGSNPCRHIPLYTGGKTTRLIT 206

Query: 177 EDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +          +  +          LA         R S+      + +      +    
Sbjct: 207 DGEMAKLFKHLDQVEAERLVPYVIPLAIRLQFEFAARRSEIVLLEWEWIDLENRRVVWPD 266

Query: 229 TGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           + T    +        L                  N    +   ++   +      AGV 
Sbjct: 267 SKTGGMSKPMSEEAYRLLSTAPRQEGGRYVLPSPRNPLTHLTYGEYYGGWTRTLKAAGVT 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +   HG+R  SAT  A++G      M     KTV     Y    D         R  + +
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED------DPVREAAEL 380

Query: 343 VDSDD 347
           V +  
Sbjct: 381 VANRR 385


>gi|71901322|ref|ZP_00683418.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71728906|gb|EAO31041.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 105/340 (30%), Gaps = 26/340 (7%)

Query: 1   MTPSLRLPPFVTKERTR---HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M         + + R R    G + YY+  G   R   P   +        + L  +   
Sbjct: 1   MGRKPSKAGAIPRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQIT 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKIT 115
                       T + +   YR        A +++     Y + +++   D    +  I 
Sbjct: 61  PAI-------AVTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLQFFDDPPAPFEAIR 112

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              IR  ++ R     SA + ++    L  W   +     +        +R  E  R   
Sbjct: 113 PVDIRKYLDWRPFK-VSANREISVFSHLCNW--ARSKGITDLANPCAGIRRNKESGRDVY 169

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +D      + +     R A +    +G R SD      +H+ N    I   KTG  + +
Sbjct: 170 IDDATYRAVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAI 229

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS--- 285
            +      L+      K    + + +  ++   F          FK     AG+ K    
Sbjct: 230 AITGELAVLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQ 289

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +R  +AT  AD      +  A  G  +V   E Y + 
Sbjct: 290 FRDLRAKAATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
 gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
           Coc' Core Site
          Length = 356

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 106/335 (31%), Gaps = 23/335 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  N   +    K K    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L        +                ++ +++   S +F      +G+       
Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + H +R  SA    +   +        G K+   A
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMA 339


>gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 311

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 76/269 (28%), Gaps = 27/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139
             L  NS  ++     Q        D      T + +   +   +       S  + L+ 
Sbjct: 20  RGLRPNSCEAYGRDLLQFAEFLEKRDGLLVGATQQDVGEFLGQLRGHAVESRSVARKLSG 79

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----------SFWSEG 189
           ++  +KW +  + V  +P L+V  P       +   + ++                    
Sbjct: 80  LKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVAARAADADGIA 139

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E L   GLR  + C   V+ ++  +  +    K      V L       LA+ 
Sbjct: 140 LRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLGRQACDALAIY 199

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----------NKSAHGVRKFSATIS 297
                          M    F        T+  V           + S H +R   AT  
Sbjct: 200 LDRGRPGLARGAGAGMRREMFLSVRGRALTRQWVWEMVRGCSENGDASPHKLRHSCATHM 259

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            + GA    +    G   +   + YT  A
Sbjct: 260 VEHGADLRSVQTFLGHADIATTQVYTHVA 288


>gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
 gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931]
          Length = 391

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 31/237 (13%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           R         P+S  + + ++R    +      +  +P  +V+ PK      +  + E M
Sbjct: 135 RDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQM 194

Query: 180 QQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNI 221
           Q+  +        G + R   EFL  +G R S+     +  +                  
Sbjct: 195 QKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVPG 254

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNATQFS 270
           +     K G    V L     + L    +     F ++              ++      
Sbjct: 255 YVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAW 314

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  K  A +AG+  + S H +R   AT     GA    +    G  ++   + YTK 
Sbjct: 315 LILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKV 371



 Score = 40.5 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128
           I +Y          + N+  S+     + +      G  D  +I T  +R+ +     
Sbjct: 20  IEQYLIHLRVEKGSSENTIASYARDLRRYVEFMASRGIIDAHRIRTADVRAFMRELAQ 77


>gi|160945136|ref|ZP_02092362.1| hypothetical protein FAEPRAM212_02655 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442867|gb|EDP19872.1| hypothetical protein FAEPRAM212_02655 [Faecalibacterium prausnitzii
           M21/2]
          Length = 358

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 99/348 (28%), Gaps = 42/348 (12%)

Query: 7   LPPFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +P +   + ++ G      Y+      ++ +L     +               +   +  
Sbjct: 1   MPAY---KDSKQGTWYASFYFENWQGVKQKKLKRGFATKKDALAW-------EREFLLQQ 50

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T +  +  Y        L  N+  + E     +I+    +    +I  + + + 
Sbjct: 51  AADLTMTFEAFVEIYITDKK-KRLRENTWSTKEHIIRTKILPYFKEKRLSEIKPRDVIAW 109

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172
                         ++P+        +  +   AVR   +  N   +      +      
Sbjct: 110 QNEMLNYRDKNGKAYSPTYLKTLHGQLSAILNHAVRFYGLKSNAAATAGCMGSEKHKEML 169

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            WTKE+  +F     +  Q   AFE L + G+R  +           +   +   K+   
Sbjct: 170 FWTKEEYLKFAEAMMDKPQSYYAFEVLYWCGIREGELLALTPADFDLDKGLLSITKSYQR 229

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             +++P      +            +    ++  +         
Sbjct: 230 LKGRDVITDPKTPKSVRVIQMPQFLTDEIRDYLKSLYKVQPDQRIFEVTKSYLHHEMDRG 289

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A  AGV +   H +R    ++  + G +A  +    G ++VD    Y 
Sbjct: 290 AKAAGVKRIRIHDLRHSHVSLLIEMGFSALAIADRVGHESVDITYKYA 337


>gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 379

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 28/352 (7%)

Query: 11  VTKERTRHGKIIY-----YFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSP 64
           +  +   +GK  Y     Y    + +  ++          A     +     K    N  
Sbjct: 25  IYLDIYMNGKRRYEFLKLYIIPVNDKTDKIRNRETLKLANAIKSQKIIELQNKAYGFNHN 84

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFD-------YRKI 114
           +    TL   I +  +S+       N+  +   + ++   K    G  D          +
Sbjct: 85  KLPDITLIDYIKKIAQSSTSNEARKNALRAVVHHLERYDSKGILLGKVDKAYVIGFIGYL 144

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGI 171
                    E +K   ++ + +   +R     AV +EY+A NP   ++   +PKR+    
Sbjct: 145 RNAKQEHCKEEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADR 204

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKT 226
              T ++++         S  + AF F  + GLR  D      + +  +       +I  
Sbjct: 205 EYLTIDELRYLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQ 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284
           QKT   I++ L    +K L      ++T  I      +  +  +      A +AG+  + 
Sbjct: 265 QKTHEAISLPLSPEAVKYLPNREKAQDTDKIFKGLISLGRS--NEILDRWAKQAGILKHV 322

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           + H  R   AT+    GA  + +    G   +   + Y K  D  ++     
Sbjct: 323 TFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAIAL 374


>gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831]
 gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831]
          Length = 392

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 106/381 (27%), Gaps = 64/381 (16%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + K   + G   Y F          G  +R                 AL+    + + +
Sbjct: 3   NIKKYTKKDGTTAYMFNAYLGKDPLTGKKKRTTRRGFKTK---KDANIALSKILVEVDEL 59

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
              +    T + +  E+ K      +   +  + ES F  +I+   G +  + IT  H +
Sbjct: 60  GIRQNDQLTFQEVFEEWFKQHR-REVKPTTVYAMESKFNRRILPVFGPYKMKDITRSHCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---------LSVERPKRKTEGI 171
             +        +   +      +F++A++ + +  NP            +E      E  
Sbjct: 119 KAINGWAKELKTFKDYKIQANQVFRYAMKMDMIKRNPMDYVTLPKLKHEMEYVAELEEKK 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------- 221
             +T+E+++ F     +          L ++G R  +        +  +           
Sbjct: 179 HYYTREELRTFLEAIQKDDMAYTMLRLLSFTGARKGELYALHWSDVDFHQKSISLKKTLI 238

Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------INNDKQKMNATQ 268
                     ++   +   V + D  + +L      +   +             K     
Sbjct: 239 YTGGEKQLQTSKTKASRRIVSVDDETLAILKKWRSKQIQRYLTLELAAPFQSDDKQPIFT 298

Query: 269 FSIWFK---AKATKAGVN---------------KSAHGVRKFSATISADAGATAHELMAT 310
                K        A +N                  H  R   A++   AGA+  ++ + 
Sbjct: 299 VYNQLKHEMDYCRLAYLNDKLERIYQKNPELPQIKVHEFRHTHASLLFAAGASIKDVQSR 358

Query: 311 YGWKTVDQAE-TYTKGADRIR 330
            G   +      YT   D  +
Sbjct: 359 LGHTDIQTTMDIYTHVTDEAK 379


>gi|324114905|gb|EGC08871.1| phage integrase [Escherichia fergusonii B253]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  IRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|221202028|ref|ZP_03575064.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221204841|ref|ZP_03577858.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221175698|gb|EEE08128.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221178111|gb|EEE10522.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 99/327 (30%), Gaps = 22/327 (6%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R GK     RK      R            +   +     +  +++    + TT+  L+
Sbjct: 6   KRDGKWQCQVRKTGFP-SRTRTFTSRADATEWGRMVEAEMDRGLFVSRDEAERTTIADLL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +       + +S     +      ++ GD+    +T+ H+ +  ++R  + +P + 
Sbjct: 65  DRYIREVSPTKRSGSSDKGRSAKLK---KQLGDYKLTALTSSHLVAYRDARLKEVSPQTV 121

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           I  L  +      A R+  + +   +      RK +G       D  Q     +E    R
Sbjct: 122 IHELNLLNRALTLATREWGIVLPAGIPKVIKPRKPQGRDRRLHPDEIQAIIDATESPDLR 181

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 + +G+R S+      +H+     +     T T     +P   +    +      
Sbjct: 182 DFIRLAVATGMRRSELASLRWEHINLERRTAHLPLTKTDTPRTVPLSSVAAAVLQERKDA 241

Query: 254 TFFINNDKQKMN-----------ATQFSIWFKAKATKAGVNK-----SAHGVRKFSATIS 297
              +       +           A            +    +       H +R  + +  
Sbjct: 242 GCTVPFAVTPNSLTRAFRRAVRRARGLYESTCRVLERPADPQWLVGIRLHDLRHEATSRF 301

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + G    E+ +  G KT+   + YT 
Sbjct: 302 FELGLQTLEVASITGHKTLSMLKRYTH 328


>gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75]
 gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75]
          Length = 356

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E 
Sbjct: 126 AMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTT 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKA-----GVNK 284
                L        +                ++ +++   S +F      +     G   
Sbjct: 246 LHVDALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASDLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA    +   +        G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 349


>gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W]
 gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi]
 gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W]
 gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W]
 gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11]
          Length = 326

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 95/309 (30%), Gaps = 27/309 (8%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             +    ++      F+ +++     GD    +++ + +      R     + ++  + +
Sbjct: 73  GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  +F   ++ +  +    +    P  +      + ++   +       G    L   
Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVAL 186

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R ++        + N   +    K G   TV         ++     K     
Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    K++  +F    +        N++ H +R   A+     G     L    G  ++ 
Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298

Query: 318 QAETYTKGA 326
           Q   Y   A
Sbjct: 299 QTMAYAHLA 307


>gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 360

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 85/264 (32%), Gaps = 16/264 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTP 130
           +   ++     + + ++  ++   F Q++    D     +       +I   + + K + 
Sbjct: 88  LQRMKEVLQMKAYSPSTIRTYMVEFAQLLYILKDVPIDSLGYDRLRAYILYCINTLKISE 147

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S     L +++  F     Q     +    + RPK+ +   +  +++++++         
Sbjct: 148 SQLHSRLNAIKFYF----EQVLHKPDFFAEIPRPKKPSTLPKVLSQKEVKRIFDAV-RNR 202

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           +  L  +     GLR S+     V  + +    +  +  K      V LP   + LL   
Sbjct: 203 KHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRLQVLIEAGKGKKDRYVPLPSAVLDLLREY 262

Query: 249 PIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                            + +       FK     A VNK    HG+R   AT   + G  
Sbjct: 263 YKAYHPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNKPIGIHGLRHSYATHLLEYGTD 322

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +     Y K  +
Sbjct: 323 MLFIQQLLGHNDIKTTMLYAKVGN 346


>gi|124514822|gb|EAY56334.1| putative phage integrase [Leptospirillum rubarum]
          Length = 341

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 97/329 (29%), Gaps = 24/329 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G       +    RI        +   A+         +  +++    + TTL   +
Sbjct: 6   KRSGAWRAIVTRKGYDRIT-RTFDTKSEAEAWARDAEAEMDRGVFVSRKEAENTTLSEAL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +                  +++            I  K I    + R  +   ++ 
Sbjct: 65  DRYEREVIPSKKGAVQESMRIRIWNR--SSLAKRFLSSIQGKDIAEYRDRRLKEVAANTV 122

Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              L  +  +F  AV++  +A  +NP   +  PK      R     ++ +          
Sbjct: 123 RHELAVLSHVFTIAVKEWGMAGLVNPVQQIRAPKMPPGRDRRLLPGELDRIIDASGSPVL 182

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL---- 245
           P +     L +G+R  +        +     ++     K G    V L    +++L    
Sbjct: 183 PDIVRLA-LETGMRQGEIAGMTWDMVDLKKRTVTLLETKNGEKRIVPLSSEAIRILAGLA 241

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSAT 295
                 +   T        +    +    ++ +    G        V+ + H +R  + +
Sbjct: 242 RRIDGKVWGITSHAVAVAFRRAVARARASYEKECEGKGEKPDSAFLVDLTFHDLRHEATS 301

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + G    E+ A  G KT+   + YT 
Sbjct: 302 RFFEKGFNPMEVSAITGHKTLQMLKRYTH 330


>gi|257790694|ref|YP_003181300.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474591|gb|ACV54911.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 357

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 98/338 (28%), Gaps = 37/338 (10%)

Query: 17  RHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           ++G  +  FR     G  +       +T   A       +       ++      T    
Sbjct: 7   KNGTWLAQFRCKDKFGNEVHKCKRGFATAEEA------QAWEDEFIASAGCTMEMTFGEF 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK------ 127
              Y        L  ++    E     +++    +    +I T  I     +        
Sbjct: 61  FKVYEADLRPR-LREHTWRQKEYAIKSRVLPFFANKKMDEIRTIDIVRWQNALMAPDAND 119

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFK 183
             P SA    T    +  +   A R   ++ NP +   +   ++   +  WTK++  +F 
Sbjct: 120 GKPYSATYLRTLNNQLTAILNHAERYYGLSPNPAMRTVKMGGKEARTMNFWTKDEYLRFS 179

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +  +  + FE L ++G+R  +              +++  K+              
Sbjct: 180 DATMDDPRAFVIFEVLYWTGVREGELLALTPDSFDWKKSTMRIDKSYQRLGGRDVITDPK 239

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                 TV++       +             +    ++    S   +     +GV K   
Sbjct: 240 TPKSVRTVKMSRFLADEVRDYANHHPEIGEGDRLFPVSKHYISHAMQRGCAASGVKKIRV 299

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R    ++  + G TA  +    G +  D    Y  
Sbjct: 300 HDLRHSHVSLLINMGFTALAIADRMGHEATDITFRYAH 337


>gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythropolis PR4]
 gi|226187113|dbj|BAH35217.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 374

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 96/366 (26%), Gaps = 31/366 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M     +  +         +    +    G   +      +        A      ++  
Sbjct: 7   MPAKKGMRGWGRVRLLPSKRYQAAYVGPDGLVHKAHATFTAKLDAEGWLAAERRRIEQGT 66

Query: 61  INSP---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
            + P        T       +            +R     Y D+ I+    + +   +  
Sbjct: 67  WSPPGQRAVAALTFGHYAERWFTETTGRH-KPRTRDLNRGYLDRVILPTFANLELEGLNV 125

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +R+   S    P+      + +R +   A+  E + +NPC       +          
Sbjct: 126 QMVRTWFASLDARPTRNANAYSLLRTILNQALDDELIQVNPCRIKRAAVKVRVVEPIALS 185

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224
               +  S      + R       +SGLR  +        +                   
Sbjct: 186 AGEVRALSAAMSIERWRALVLVAGFSGLRWGELAALRRSDVVLTDSECSVTVARAVVRRT 245

Query: 225 ------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIW 272
                 + +    + TV LP    + L            N            +       
Sbjct: 246 GEFVIGRPKSHAALRTVPLPSALREALEDHLELYALPGRNGLVFPSVGGTVAHENVVRPH 305

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            K  A K G      H +R  +AT+ A AGAT  + M   G  +   +  YT   A R R
Sbjct: 306 LKKAAAKIGHQSFRFHDLRHTAATMFAQAGATLADHMTLMGHTSAAMSARYTHSTASRNR 365

Query: 331 LGIKNS 336
             ++N 
Sbjct: 366 ELVENM 371


>gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 334

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 93/311 (29%), Gaps = 61/311 (19%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130
            +         L+ N+  ++ +        +   G  D R++TT  +R  +  E+R H  
Sbjct: 9   AFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHAR 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           SS  + + S+R  F WA     +  +P   +  PK         T+   ++      +  
Sbjct: 69  SSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDA 128

Query: 190 -------------------------------------SQPRLAFEFLLYSGLRCSDSCRA 212
                                                 +     E L  +G+R ++    
Sbjct: 129 SLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGL 188

Query: 213 GVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFIN------------- 258
            +  +  +  +I+          V   D   K LA          +              
Sbjct: 189 DIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALF 248

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                ++++           A ++GV   S H +R  +AT   D GA   E+    G  +
Sbjct: 249 LGMRGRRIDQRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSS 308

Query: 316 VDQAETYTKGA 326
           +   + YT  +
Sbjct: 309 LRTTQRYTHVS 319


>gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii
           DSM 18315]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 120/376 (31%), Gaps = 47/376 (12%)

Query: 11  VTKERTRHGKIIYYFR-KGHGRR---------IRLPYPHESTFIPAYMSA--------LT 52
           +     R G    Y      G+R         I    P       A M+         + 
Sbjct: 5   IRTRTLRTGSRSIYLDFYDKGKRWNEYLNLFLIPDDEPDAKRLNEAAMAKANTIKSKRML 64

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS----- 106
           G   +                 ++++ +      S A ++  ++ S  + I         
Sbjct: 65  GIEEETNDDEQSELPKRVFADWLADHIEGIRRNPSYAASTYRNYRSTVNVIKAYLQHLRR 124

Query: 107 --------------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                         G  D+ + T ++ +S    ++ +P +   + +++  +   AV++  
Sbjct: 125 QRLLMSKIDKGFVLGFIDFIEHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGV 184

Query: 153 VAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           +  NP       +R  ++       TKE++  F    +     + AF F  ++GLR SD 
Sbjct: 185 LDRNPFYSLERKDRIGKQQAEKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDV 244

Query: 210 CRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                + ++   N + +  +         +       +++ P                 +
Sbjct: 245 SALTWRDIRQGDNGWMVSVKAMQKTGKQVVIPLNQSAISLLPDRNGCKPSQKVFDMTCLS 304

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +   K  A  AG+ K  S H  R   A ++  AG   + +    G  +++  + Y   
Sbjct: 305 SCNKCLKKIAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADA 364

Query: 326 ADRIRLGIKNSRRISS 341
               +  ++   RISS
Sbjct: 365 VMETK--VEAISRISS 378


>gi|284006802|emb|CBA72070.1| phage integrase [Arsenophonus nasoniae]
 gi|284009416|emb|CBA76618.1| phage integrase [Arsenophonus nasoniae]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 114/380 (30%), Gaps = 58/380 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G    +F   +G+R+R      +          L     + + +        T + 
Sbjct: 4   TLRGGIWHCHFFTPNGKRVRRSLGTSDKKQAQELHDKLKAEAWRVDEL--GELPIRTFEE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------------------ 115
               +            S    +   D  +++    D   IT                  
Sbjct: 62  ACLRWLDEKGHK----RSLDDDKVKIDFFLQQLAGRDIASITGDEVHNIVGKMINRNHRR 117

Query: 116 TKHIRSG-----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              IR              + R  +  +   +L  MR L + A   ++  +     ++  
Sbjct: 118 RWEIRRDAAIRDGKTIPAYKERPVSVGTKSHYLGFMRSLLR-AAANDWGWMKTAPVIKTN 176

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K  ++ IR  T+E+  +      E  +P + F   L +GLR S+        +       
Sbjct: 177 KPVSKRIRWLTREEANRLIDCMPESIKPVVIFA--LSTGLRRSNIIDLEWSQVDMQRKVA 234

Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKA-- 277
                       I V L D   K+L         +   + K    A    +   +     
Sbjct: 235 WINPENAKAGKAIGVALNDTACKVLKGQIGKHSRWVFVHTKAANRADGTKTPAIRKMRVD 294

Query: 278 ---------TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                     +AG++    H +R   A+    +G     L    GW++++    Y   A 
Sbjct: 295 DNTGWLLGLKRAGIDNFRFHDLRHTWASWLIQSGVPLSALQEMGGWESIEMVRRYAHLAP 354

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                 +++++I S++D +D
Sbjct: 355 NH--LTEHAKKIDSLLDGND 372


>gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
 gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1]
          Length = 428

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 16/257 (6%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137
                 + ++   ++S+          ++ ++IT + IR+ +    + R+ + S   Q +
Sbjct: 161 LKALRYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIRTYMRYLVQEREISESYQNQMI 220

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +++    +   +          ++RPKR        ++++  Q         + +    
Sbjct: 221 NAIK----FYYEKVLGGKQQTYFIDRPKRSKPLPIVLSQKETIQLLKSI-PNLKHKTILT 275

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE---LPDGFMKLLAMTPIGK 252
            +   GLR S+     +  +    N   I   K      V         +K+       +
Sbjct: 276 VIYSCGLRVSELIDLKLSSIYLEENKIHIVAGKGKKDRYVTLAVRTKKLIKIYIKKYAPE 335

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
                     K   +    + K  + +AG+ K  + H +R   AT   + G +   +   
Sbjct: 336 HYLIEGQKGGKYATSSIQKFIKKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYI 395

Query: 311 YGWKTVDQAETYTKGAD 327
            G +     E YT    
Sbjct: 396 LGHQNSKTTEIYTHITQ 412


>gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
 gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein
           [Clostridium perfringens E str. JGS1987]
          Length = 312

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 11/280 (3%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            KR    +  +    +  L+ EY         ++++  ++E+ F + I   GD    +I 
Sbjct: 3   RKRIVKKTIEQFDMKISELLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEIN 62

Query: 116 TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           TK I     + K   +P +   +++ +R +F +A +QEY+       ++  ++       
Sbjct: 63  TKVINHFKNNLKDKVSPRTINTYISHLRAVFNYAYKQEYMDKLEIKLIKVQQKVKYVPTD 122

Query: 174 WTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              E  + + +         RLA   +  +G+RC +     + +      S    K   +
Sbjct: 123 EEIEILLSEGRKETYSNYVCRLACMVMCTTGIRCLEFLSLNIGNFTKEYISTNHTKNRML 182

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKA-KATKAGVNK 284
             + +P+   K +             +D        ++     F   F+     K G   
Sbjct: 183 RYLPIPNLVSKEIRSYIKNYRKDAKQDDPLFVSVYLRRYTDKGFRKSFRDFAKKKIGHEI 242

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R++  T S +  A    L    G         Y K
Sbjct: 243 GTHCLRRYFITKSLNNNANPILLAKITGHHDTRMFNYYYK 282


>gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
 gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 82/262 (31%), Gaps = 15/262 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y       + + ++ I++E    ++           +   +     +  R   P+S  + 
Sbjct: 11  YLTEQRQRNRSPHTLIAYERELRELANLLPATAQPARRDFQAAFRQLSQRGLHPASLARA 70

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191
           L++ R    + VRQ  +  NP   ++  K+     R            Q  +S  +   +
Sbjct: 71  LSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAIERDTLNALLDQPAESDDTLALR 130

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPI 250
            +   E L  SGLR ++     +  +  +        K      V L    + LL     
Sbjct: 131 DQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSSVALLQQWLA 190

Query: 251 GKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            +                ++ + Q +      A + G  +  S H +R   A     A  
Sbjct: 191 QRPAQPHETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLRHSFAGHLLQASR 250

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G  ++   + YTK
Sbjct: 251 DIRAVQDLLGHASLSSTQIYTK 272


>gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 386

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 26/298 (8%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKI 114
             +E +   R    T   L  E+        +A N+R +  S + + I    G      I
Sbjct: 73  KPKEELEVDRFLTATFDVLYLEWIDHK--THIAKNTRRTMLSFHRNHISPYIGHKLLGDI 130

Query: 115 TTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T K IR  +   S+ +      + L S+R  F   V + ++  +P   V+  + +   I+
Sbjct: 131 TEKDIRMMMTVMSKVNRNVVVNRKLRSVRSFFNEVVEEGHLKESPFKKVKYLRNEKVDIK 190

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI------- 224
           P+ +E++ +    ++E      +F   L +SG R ++        +      I       
Sbjct: 191 PFNQEELARLLVGFAEKYPAYESFVAFLAFSGCRPNEVVGLKWDKIDWENRKILIREGFV 250

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAK 276
                  KT + +        +++L +  + K          + N       F   +   
Sbjct: 251 LGEETLLKTDSSVRDIDMTEPLEVLLLQQLDKGIDSEYVFVNEFNRRICWENFRQKYHRV 310

Query: 277 ATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE----TYTKGADRI 329
                +     + +R   A+++   G     +    G   +         Y    +R 
Sbjct: 311 LKLKNIVSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTTLTTYTRYIPSLERK 368


>gi|194438148|ref|ZP_03070240.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|194422812|gb|EDX38807.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F   +G+R +           A                       T +     + +
Sbjct: 10  WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                     S    +S     ++       R IT   I S ++   +            
Sbjct: 69  EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124

Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                              ++    L+ ++ L + A  +E+  ++    ++ P+ K + I
Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
           R     + Q+      E  +     EF L +GLR S+      Q +         + +  
Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275
           K+   I V L D   ++L         +     +                    +  +KA
Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              +AG++    H +R   A+    AG     L    GW++++    Y        L   
Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355

Query: 335 NSRRISSVVDS 345
           +    +  +DS
Sbjct: 356 HLTEHARQIDS 366


>gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227]
          Length = 326

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 96/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    +++ + +      R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEATPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G    V         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRIVP--------ISEELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L   +R+            +A  +   +E+                D    +++ + I
Sbjct: 84  RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 143

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  K       ++A ++L + + + + A+ + ++  +P L +              
Sbjct: 144 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 202

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +   ++  + G  
Sbjct: 203 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 262

Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T  + +  +     K+L      +           +   + + + K  A   G+ K+  
Sbjct: 263 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 322

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H  R   AT +   G +   +    G   V     Y +  DR
Sbjct: 323 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 365


>gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 293

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 25/280 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS 132
             +     +    + ++  ++    +       D      +   + IR  +         
Sbjct: 4   QRFLNFLRFEKRYSNHTIEAYTHELNVFFTFLQDQGVPEEEADHRVIRLYLSHLMEEGRQ 63

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           A    + ++++R  +K+  R+     NP   ++  K   +      K+ M          
Sbjct: 64  ATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGA 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                  +  L  E L  +G+R ++  +  +  +     +I    K      V +    +
Sbjct: 124 VDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKERLVPVNHTLL 183

Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
           + L +     +   I+N           ++              +       KS H +R 
Sbjct: 184 EKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AT   D GA  + +    G   +   + YT    +R++
Sbjct: 244 TFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLK 283


>gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C]
 gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
 gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C]
 gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli
           B185]
          Length = 326

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLSELLDIWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    +++ + +      R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSIRLRDGISAATINRDMYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 324

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 98/321 (30%), Gaps = 35/321 (10%)

Query: 54  STPKREYINSPRKKPTTLKW---LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSG 107
              K+    +      T +     I ++++   + ++  ++  +  +          + G
Sbjct: 3   ELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIG 62

Query: 108 DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW-------AVRQEYVAINP 157
              Y   T   +         R  T  +  ++   ++V ++           +E +    
Sbjct: 63  KEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKR 122

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQ 215
               E+    T     + +   +   S      +  L    L  +G R S+  S R    
Sbjct: 123 FSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDC 182

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNA 266
             +   F I+  KT    TV + +  ++++                    +  + +++  
Sbjct: 183 DFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKL 242

Query: 267 TQFSIWFKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              +  FK    K         G     H +R   AT   D G     +    G ++++ 
Sbjct: 243 DWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLET 302

Query: 319 AETYTKGADRIRLGIKNSRRI 339
              Y+   +R    + N +++
Sbjct: 303 TLYYSHSKERKNGMLDNIQKL 323


>gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
 gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1]
          Length = 434

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 90/348 (25%), Gaps = 44/348 (12%)

Query: 21  IIYYFRKG-HGRRIRLPY--PHESTF--IPAYMSALT-----GSTPKREYINSPRKKPTT 70
               +R G  GRR+           F    A  +A                    ++  T
Sbjct: 42  WFIEYRPGAGGRRVAKRRYYFGSREFTPEQARQTAKELLANVALGGDPMKDRLHERQSLT 101

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHT 129
                  Y        L   +  ++     +    + G     KI+   +         T
Sbjct: 102 FSEFAERYLSEEAEPKLKPGTVANYRIAVRRHANPEIGKLKLHKISNADLARLHTKIGKT 161

Query: 130 PSS-AIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGI--------------- 171
            +  A + L  +  +F++        V  NP   +   +                     
Sbjct: 162 STVNANRTLECVSSIFRYAVTCDIVPVGHNPTKGIRAFRENRRERFLNSDELARLGSAIR 221

Query: 172 --------------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                         +P +K   +         S    A   L+ +G R  +       ++
Sbjct: 222 EAETVGIPYEIDETKPTSKHAPKPENRRTKIDSYTAAALRLLILTGARLREILHLKWDYV 281

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 +    + T     + +     +  +   K  + I ++++       +  ++  +
Sbjct: 282 DFERGLLLLPDSKTGRKAIVLNVPALAVLSSLDRKGQYVIFSEQEDKPRADLNRPWRTIS 341

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +A +     H +R   A++ A AG     +    G       + Y  
Sbjct: 342 ARAKLQGVRLHDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAH 389


>gi|320006222|gb|ADW01252.1| phage integrase [Lactobacillus phage LF1]
          Length = 362

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 99/337 (29%), Gaps = 35/337 (10%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R GK      +Y   G  R          +    +      +  K    +    K  
Sbjct: 4   YVKRSGKWQARISWYDTAGKRRFKNKGGFTTKSLAKKWAVENEANLAKGILTD----KEI 59

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           T    + ++  +     +A  +   +    +++ R       R++T    +  +      
Sbjct: 60  TFADYVDQWVTTYKEPKVAKITLDRYHYTANEVRRFFKLTPIRQVTRTMYQEFINDYGSC 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSF 185
           H P +  +  + +R   K A+  +Y+  +    VE    K+  I+     K ++ +    
Sbjct: 120 HAPPTVKKVNSYIRSAVKSAILDDYLIKDFTQGVELNSDKSRSIKVDYLNKAEIHRLIQH 179

Query: 186 WSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
              G   R     +    +Y+G+R ++        +     +I   K+            
Sbjct: 180 AEAGLTRRYTSRHMIVTAIYTGMRLAEIQALTWSDIDWIKSTITINKSWDAHTRQFKPTK 239

Query: 231 ---TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
              +   +++    + LL    T       F+        +   +   +      G+N+ 
Sbjct: 240 TESSNRVIKVNRHLLALLRGLRTHSKSNMVFLTQFGTIPTSNAVNKTLRTLLADLGINRQ 299

Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               H +R     +   +G   + +    G  +    
Sbjct: 300 NFHFHSLRHSHVALLLASGIDLYAISKRLGHSSTVIT 336


>gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7]
 gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7]
          Length = 396

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 99/349 (28%), Gaps = 45/349 (12%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
              P P  +               +       + K    +    ++ +     +L   + 
Sbjct: 31  TWKPEPKMTAKQIEKELNRQAVMFEEACNKGYQSKAIKFEVFAEQWFEEYAKPNLRNTTY 90

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMR 141
                   ++    G     KIT + I++ V S               P +    L+ + 
Sbjct: 91  ERMLQLRKRVYAAIGHLRMDKITPRQIQAFVNSLSKEGANERTGKPLAPKTIRHNLSFVS 150

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLL 200
            +F + V+   ++ NPC  V  PK +    + +T E +Q+F S    E  + R  F  ++
Sbjct: 151 DVFAYGVKMGVISDNPCAKVTLPKNEQTEKKIYTPEQVQRFLSLLNDEPLKYRTFFNLMI 210

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSI-------------KTQKTGTIITVELPDGFMKLLAM 247
           YSG R  +      + +      I                 T      +    F + +  
Sbjct: 211 YSGFRRGEMLGLEWKDVDFENNIISVRRTSNYTAKKGVYTDTTKTRKSQRTLKFPQAIMD 270

Query: 248 T------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
                               +  +  ++  + + M       W      K  +     H 
Sbjct: 271 MLREYKAEQDEQALKCGDKWVETDRLYVKWNGEPMQNGTPYFWLGEFCEKHDLPFYGLHS 330

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
            R   A++  + G     +    G  TV      Y    +  R  + ++
Sbjct: 331 FRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEESRAKVSDA 379


>gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus]
 gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160]
 gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 390

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R   +      +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                               F  L Y+G+R  +        +     +I           
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5]
 gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGVESRKHTP---SSA 133
              A  +  ++ +   + +    R  G          ++    R+ +          ++ 
Sbjct: 28  RRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAKAASDGVGNATR 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192
            + L+++R  F+W  ++  +       +  PK +    R  T  D         + +  P
Sbjct: 88  AKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAVVDSLGDDAASP 147

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            LA        L      R       N           ++         + LL +     
Sbjct: 148 ALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQRIVPLLPVLRREI 207

Query: 253 ETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
            ++  ++                ++N        +      G+    + H +R   AT  
Sbjct: 208 ASWLRHHPAPTPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLPEHATPHALRHSFATHL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              GA    +    G  ++   + YT   D  RL  
Sbjct: 268 LANGADLRAIQELLGHASLSTTQRYT-AVDADRLMA 302


>gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 329

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 41/300 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + L   +  +     +  +S    + +    I+   G+    KI+  + +  V    
Sbjct: 16  TTFQELYELWIDNYRTR-VKPSSVAVAQRFCKNHILPAFGELRLDKISVSYCQKQVNEWH 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185
            T         +   +FK+ V  E    NP      P++    + ++ +TK+ +Q F   
Sbjct: 75  KTLKQYGFLRKTTAQIFKFGVAMEVCKDNPMSKTLLPRKIEEEQPLKFYTKDQLQLFLQN 134

Query: 186 WSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS-----------------IKT 226
             E +  +L   F L  Y+G+R S++     + +     +                    
Sbjct: 135 TKENNSVKLYTFFRLLAYTGMRKSEALALQWEDIDYFNKTITIGKTIAQDEFNQVVLQVP 194

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------SI 271
           +   +  T++L D  +K L +    +    I       +  QF               + 
Sbjct: 195 KTKNSSRTIQLDDFTLKQLRIWQQEQMKIMILYGYNTNSPKQFLFTTNTNKLYYPQVVND 254

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           W      K  +    + HG R    ++  ++GA+  E+    G K +      Y     +
Sbjct: 255 WLDWIYKKTPMEPQITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQ 314


>gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
 gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. AzwK-3b]
          Length = 363

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 106/331 (32%), Gaps = 33/331 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----SPRKKPTTLKWLISE----Y 78
            G  R I+L    E +   A    L       +       +   +  TL     +    +
Sbjct: 23  DGKMRVIKLGRFPEISTERARALCLEHKQRISQGATVDDLTKPVRSMTLDQFYRDHFLPW 82

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135
            ++  +   + N    + S +  I    G      I    +R     ++   + P S  +
Sbjct: 83  YQT--YRRNSTNIVQLYRSTY-HIR--YGHRHLHTICQDDLRKLTKEMQDLGYAPGSVNR 137

Query: 136 FLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQ 191
            +  +R + + A       +  +               R  ++E+ Q+ ++       + 
Sbjct: 138 TVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHERFLSREEAQRLQAVLQRRGATP 197

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP 249
             LA  FLLY+G R S+   A   H+       +    K G   TV L D  + +L    
Sbjct: 198 VNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVILSDRAVDILEQAR 257

Query: 250 IGKETFF----------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
             ++  F            N + +         +K    +A + +   H +R   A+   
Sbjct: 258 AYQQRHFVKQARSVSTVFANPQTRQPYHNIWETWKRVRAEADLTDVRLHDLRHSYASTLI 317

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +AG + +E+    G   +   + Y   A   
Sbjct: 318 NAGVSIYEVQKLLGHTNITTTQRYAHLASER 348


>gi|323945396|gb|EGB41450.1| phage integrase [Escherichia coli H120]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 385

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/379 (13%), Positives = 112/379 (29%), Gaps = 52/379 (13%)

Query: 11  VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + K  T+ GK  +  +           ++ ++    ++       +A          + +
Sbjct: 4   IKKYATKDGKEFWRVQVFAGNDPQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEN 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
            +  P   + +  E+  +    ++  ++       F + I+   G      ITTK ++  
Sbjct: 64  EKPTPVFFRDVYEEWYGNY-INTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKA 122

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKE 177
           V+   + T ++  ++   +  +  +AVRQ Y+  NP  +V  P        +    WTKE
Sbjct: 123 VKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVVLPHHDDLAGDKPENFWTKE 182

Query: 178 DMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN---------------- 219
            M +F +   + +     + F  L ++G+R  +        +                  
Sbjct: 183 QMNRFFACIDQANHFDIFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDK 242

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
            +      +      T+ +    M  L      ++  F+      M   Q          
Sbjct: 243 GHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGY 302

Query: 270 ------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                 S          G+    + HG R    +    AG     +    G         
Sbjct: 303 QSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLG 362

Query: 321 TYTK-GADRIRLGIKNSRR 338
            Y    A +         +
Sbjct: 363 VYAHVSAKQESEATAALAK 381


>gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 336

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 91/310 (29%), Gaps = 40/310 (12%)

Query: 67  KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITT 116
           KPT    L++ +         +L+ N+  ++   F  ++R   D            +I  
Sbjct: 2   KPTDFSMLVTSFLTHHLAAQRNLSPNTIKAYRDVFTLLLRYCRDVRGIALERLSLAQIDV 61

Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPK 165
             + + ++     R  + S+    L ++   F++   +    +  C          +   
Sbjct: 62  GLVEAFLDHLANDRHVSVSTQNHRLAALHAFFRYVQSEVPERLLQCQQVLAIPLRRQPRA 121

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                 + +  + + Q     SEG +  +    L  +G R  +        ++ +  +  
Sbjct: 122 SVGYLPKEYLAQLLAQPDLRTSEGCRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQV 181

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFK 274
               K      V L D  ++LL                + +         + +      +
Sbjct: 182 RLMGKGRKPRAVPLMDSTVELLLQYRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQ 241

Query: 275 AKA---TKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-A 326
                  ++  + +     H +R         +G     +    G   V   E Y +   
Sbjct: 242 KYVIPVRRSHPDFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANL 301

Query: 327 DRIRLGIKNS 336
           +  R  ++ +
Sbjct: 302 EMKRKALEKA 311


>gi|24111756|ref|NP_706266.1| putative phage integrase [Shigella flexneri 2a str. 301]
 gi|30061876|ref|NP_836047.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
 gi|24050540|gb|AAN41973.1| putative phage integrase [Shigella flexneri 2a str. 301]
 gi|30040120|gb|AAP15853.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032]
 gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032]
          Length = 339

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 94/337 (27%), Gaps = 47/337 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y     G+R+R           A+ +       K+ ++     +   L
Sbjct: 4   RKQSNGKWLCECYPNGREGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLGEKEDRRR-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126
             +I ++       SL   +    +    +   I    G+    ++T        E+R  
Sbjct: 62  SEVIEQW------HSLYGQTLADPKRLMAKLSIICNGLGNPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K     +  
Sbjct: 116 GEVRSEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            T E++++     +E   P L       L +G R S++       L     +    K   
Sbjct: 176 LTPEEIKRLLDACAESQSPCLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +       L        T                  F+    +AG++       H
Sbjct: 236 NRTVPISQDLYDELPKNRGKLFTPC-------------RKAFERAVKRAGIDLPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A+     G     L    G   +     Y  
Sbjct: 283 VLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAH 319


>gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1]
 gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1]
          Length = 331

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 101/319 (31%), Gaps = 18/319 (5%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR           A+   +  +   +E++  P     TL
Sbjct: 4   KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128
             L+  +                  +       + G     ++T K I   R  + +   
Sbjct: 62  TELLGRWWIYHGKSHERGGIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMNDGL 121

Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P+S  + L  M  +F K     EY + NP   V+R +     +   + E++ +  S   
Sbjct: 122 KPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS--M 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                  A    L +G R S+      +H+ N + +    K G   T+ +    +K +  
Sbjct: 180 LDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKRIKT 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G+            +  +     +         ++ H +R   AT     G     L
Sbjct: 240 KNSGRLFNA--------SYYKVRNALREVKPDLPDGQAVHVLRHTFATHFIMNGGNIITL 291

Query: 308 MATYGWKTVDQAETYTKGA 326
               G   + Q  TY   A
Sbjct: 292 QRILGHSNIQQTMTYAHFA 310


>gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08]
          Length = 342

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 88/278 (31%), Gaps = 15/278 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESR--KH 128
              ++ ++K       +      + +  + +   +G     + I    +         K 
Sbjct: 70  ADFVAYFKKLGERKGQSS---KVWRNVLNYLEVFTGGRVVFKNIDELWLEKWQRFLLEKV 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSF 185
           + ++A+ +    +     AVR   +  NPC  V+  KR+       T  +++Q       
Sbjct: 127 SRNTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLSETLPK 186

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +    F F  ++GL   +      + ++++             T          L
Sbjct: 187 DENSQEVARMFLFGCFTGLSLGNLETLTYKQIESDT---VKFFRSKTKTWHHVPLNETAL 243

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV--RKFSATISADAGAT 303
           ++     +           +             +AG+ K  H    R   AT++  +GA 
Sbjct: 244 SLIGDTFDCDPNGRIFNTPSRRYSQTLVGKWGKQAGIKKHVHMHVSRHTFATLNLSSGAD 303

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
            + +    G K +D  + Y K  D + R  +    ++ 
Sbjct: 304 IYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDALPQLE 341


>gi|300817238|ref|ZP_07097456.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530214|gb|EFK51276.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 107/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S +    +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMHKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B]
 gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B]
 gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 329

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 110/329 (33%), Gaps = 44/329 (13%)

Query: 24  YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y+ K  G    I      ++    AY   + G           RK   T   L  ++  S
Sbjct: 23  YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFTQLWRKFLAS 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140
           A +  LA  ++  + ++   I+   GD + + I  +HIR  +++R       A    +SM
Sbjct: 72  ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             +F+W+ ++ YV  NPC+ V++  +           D +    + +     R A E   
Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRY---ITDEEYRAIYNNATPAVRAAMEIAY 188

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFIN 258
               R SD  +     +      I+  KTG        D       +      +      
Sbjct: 189 LCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRT 248

Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHE-----L 307
              ++ +   F+  ++     AG      ++ + H +           G + +E      
Sbjct: 249 MYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL--------KAKGISDYEGTAKDK 300

Query: 308 MATYGWKTVDQAETYTKGA------DRIR 330
               G KT  Q   Y +        DR R
Sbjct: 301 QKYSGHKTESQVLVYDRKVKMSPTLDRKR 329


>gi|320528560|ref|ZP_08029717.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320131146|gb|EFW23719.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 366

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 110/363 (30%), Gaps = 35/363 (9%)

Query: 11  VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V +++ R+       Y    G  ++              Y S                  
Sbjct: 3   VYRDKQRNAWFVVTRYKDWTGKVKQTTKRGFRTKHDAQRYESLF--------IDKKKDST 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126
               K  I  Y +      +  N+ ++ +  F   I+   G+    +IT K I    +  
Sbjct: 55  DILFKNFIEIYLELMEHR-IKENTLMTKQYIFYHQIVPYLGEMKLDEITPKDIVHWQDQV 113

Query: 127 KHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQ 181
               +    +L +    +  LF +AVR   +  NP        ++    I+ WTKE+   
Sbjct: 114 MKDNNYKQTYLKTIHNQLSALFNYAVRFYGLKNNPARLAGNMGKEEVSEIKFWTKEEYLT 173

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
           F        +   AFE L + G+R  +      +       +++  K+            
Sbjct: 174 FSRAMMNKEESYHAFEILYWCGIRLGELLALTAEDFNFEKKTLRINKSYQHIKGKDVITT 233

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                    + LPD     +           +++    +  +           + GV + 
Sbjct: 234 PKTRKSNRVLTLPDFLADEMQDHISRLPYLKVDDRIFTITKSGLHHEMDRGYRETGVKRI 293

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             H +R    ++  + G +A ++    G ++V     Y        L I     IS   +
Sbjct: 294 RVHDLRHSHVSMLIEMGFSAVDIANRVGHESVKVTYRYAHLFPNKNLMIAKKLNISRNGE 353

Query: 345 SDD 347
            D+
Sbjct: 354 KDE 356


>gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 290

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
           L     +      +   ++ +                    T   +R+       T   P
Sbjct: 4   LRERMIEDMRIHGMGDKAQKAHIRAVKHFAGFL-KRSPDTATPDDLRAYQLHMTDTEVTP 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EG 189
            +    + ++R LF     ++ +        +   +        + E++ +  +     G
Sbjct: 63  PTFNARIMALRFLFGTTCDRKGMKRYM----QFCTQPRRLPTVLSIEEVAEVIAAAPGPG 118

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + R A      +GLR S+ C   V  + ++   I   +        V L    + LL  
Sbjct: 119 LKYRAALSISYGAGLRASEVCSLKVSDIDSDRMLIHVDEGKGGKDRKVMLSPDLLDLLRD 178

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                +              ++A Q S  F +     G+    + H +R   AT   +A 
Sbjct: 179 YWREAQPAGWLFPGKPKINPISARQLSRAFNSAKHVVGISKPATLHTLRHSFATHLLEAN 238

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                +    G   +     YT  A +
Sbjct: 239 IDVRVIQVLLGHAKLSTTARYTHVATK 265


>gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
 gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5]
          Length = 291

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 14/264 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +I  Y         +  + I+  S     +R   +  + +I+ + +       + + ++ 
Sbjct: 16  IIDNYMAFR--SGHSDKTVITNISGIRIFMRFHKNKTFDEISLEDVIEFYRKHESSENTK 73

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           IQ+L+ + + + W + + Y   NP        RK++  R +  ++   +        + R
Sbjct: 74  IQYLSRLTLFYNWGISENYFLRNPVEKFLVTLRKSKKEREYLTKEQTNYLLSNVFEYEYR 133

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
           L   F L++G+R S+     +  +  +  +I+   K      V + +     L +  I +
Sbjct: 134 LFLMFFLHTGVRNSEFRNLKIHDVDMDERTIRILGKGRKERYVFIDNELYSYLKIWLIQR 193

Query: 253 ETFFINNDKQKMNA----------TQFSIWFKAKAT-KAGVNKSAHGVRKFSATISADAG 301
           ++ F  +D   +N             F+ +    +  K G   + H +R   AT   D G
Sbjct: 194 DSKFPKSDHFFVNRLGNPIRLTHLVSFTDYLNEVSKNKIGFRITPHILRHTFATRCIDMG 253

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
                L    G + +     Y   
Sbjct: 254 MDLKTLSLILGHEDIKTTSIYLHK 277


>gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
 gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4]
          Length = 316

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 82/287 (28%), Gaps = 38/287 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129
           I EY          + ++  ++    D+  R     G  D   +T  H+           
Sbjct: 11  IREYLDHLAVEKGASAHTLAAYRRDLDRYRRHLAAVGVDDLTAVTEAHVEDFRARLATGD 70

Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    PSS  + L ++R L ++A R      +   +V  P+      +    + M 
Sbjct: 71  PDEGRPPLAPSSVARTLAAVRGLHRFATRDGVTDTDVAAAVAPPRPPRRLPKALPLDRMI 130

Query: 181 QFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQ 227
                             + R   E L  +G R ++     V  L               
Sbjct: 131 AVIEAAGDTGVDTDPARLRDRAMLELLYATGARAAELIGLDVDDLDGLDHPDGGTVILRG 190

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT 278
           K G    V +     + +                   F+N    +++         A A 
Sbjct: 191 KGGKERLVPVGRPACEAVGAYLTRARPALAKRGGPALFLNTRGGRISRQTLWNVVSAAAA 250

Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +AGV    S H  R   AT   D GA    +    G  +V   + YT
Sbjct: 251 RAGVTQEVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYT 297


>gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
 gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758]
          Length = 373

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 102/359 (28%), Gaps = 45/359 (12%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +LP  +   R R       F                T        +T    K E+    
Sbjct: 8   RKLPKGI---RQRGNTFEGRFMYKGVSYTVQASTITKT-----QKEMTDLKYKLEHGLYV 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           +K+  TL      + +      + + +  S+E Y+   I  + G+ +  +I  +HI+   
Sbjct: 60  KKEKITLMEWYETWLEEYKKNRVKIGTYTSYEKYYKSTINNRLGNKELSEIRGEHIQKLY 119

Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179
                   +          +    + A++   +  NP    E P++  T+  R    ++ 
Sbjct: 120 NDMVKEGYAISSIKIVSAILNGCLQQAMKNGLIERNPVKLAELPRQTGTKKERTAMTKEQ 179

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------T 226
           Q     ++E S     F  +L +G+R  +        +      I               
Sbjct: 180 QDLFMKYAEESYLYHFFSVMLRTGMRKGEMQGLKYSDIDKKQNVIHVRRTLKYIEGKGYF 239

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF------------INNDKQKMNATQFSIWFK 274
           + T    T          +      +  ++             N +   ++  +      
Sbjct: 240 EDTPKTRTSTRDIPLTAAITEHIEAQRKYWGFKVVRMDQYLFCNENGDPISRERIQGEID 299

Query: 275 AKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
               +   +       ++H  R   AT + +AG     L    G  ++      Y+   
Sbjct: 300 RIIKRIKSDGYDFPRITSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHVL 358


>gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 390

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 94/296 (31%), Gaps = 29/296 (9%)

Query: 69  TTLKWLISEYRK-SAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            T +  I  Y +       +A  +  ++      F + +   G  + R+ITT  + + + 
Sbjct: 1   MTFEEAIEAYFEVGVVLRGMAAGTVEAYRCDFRDFSRFLESQGVGEVREITTAVVNTYLV 60

Query: 125 SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180
             +      S+  +   ++  L  + V+Q +V  NP   V    +         +   ++
Sbjct: 61  GLRKRGLSLSTVHRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVR 120

Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------NNIFSIK 225
            F          +G         L+++GLRCS+   A   H+           +   + K
Sbjct: 121 TFLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTARK 180

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
               G    + L    ++ L   P  +          ++            +  + +   
Sbjct: 181 GLPEGKDRDIPLCQTVIQALNALPYRQGPLLQTRGGLRLGVDALREIVARLSQASRLEYD 240

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
               + H  R   A+     G +  ++    G K     + Y     +R+R  ++ 
Sbjct: 241 HRPLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQG 296


>gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 113/380 (29%), Gaps = 49/380 (12%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + +   + G   + F+         G+ +R    +  T   A    L       E     
Sbjct: 4   IKQYEKKDGTKAWLFQTYLGISPLTGKEVRTTRRNFKTKKEA-QIELNRLLVDFEENGLK 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   T K +   + +S       V        +   I+ K G F  ++ITTKH++  + 
Sbjct: 63  KETNETFKEVYDLWYESYKTTVKEVTQLKIEIKFNKWILPKYGQFRIKEITTKHVQKILN 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----------W 174
               T        ++   +FK+A+    +  NPC  V  P R  E  +            
Sbjct: 123 QWAKTTDQYKVLHSTASRIFKYAMTLGIITKNPCELVIMPNRNVEKKKDTVKIYSRDQLE 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------- 225
           +     + K         +    FL +SG R S++       +  N  ++          
Sbjct: 183 SLFQYLESKRSTYRADYDKTLLRFLFFSGCRISEALALDWSDIDFNSNTVTINKTLSQTK 242

Query: 226 -------------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                KT   +     +    +L +        F    K+ +  
Sbjct: 243 YGYKISSPKTRNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITK 302

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                        +G+     H  R   A++  ++G +  E+       ++    +TY  
Sbjct: 303 HAIYSRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAH 362

Query: 325 GADRIRLGIKNSRRISSVVD 344
                +   K   +++  ++
Sbjct: 363 LTKETK--EKTVEKLAEHLN 380


>gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 421

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/377 (11%), Positives = 109/377 (28%), Gaps = 50/377 (13%)

Query: 9   PFVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHE------STFIPAYMS-ALTGS 54
           P        +G+  Y         R    RR+ +   +             Y++ A  G 
Sbjct: 33  PGFGLRVAANGRKAYIVSYRVGVGRGAKQRRVSIAASNTMTCEMARKEAQVYLANARLGE 92

Query: 55  TPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLA------VNSRISFESYFD-QIIRKS 106
             + E   + + K   T+   I  +   A   +          +  +  S  D  +I   
Sbjct: 93  DRREEIDAAAKAKADITVAKAIEIWHAEAAHRNRRTGKARDPRNIRNEMSRMDAHLIPAI 152

Query: 107 GDFDYRKITTKHIRSGVESRKHTPS-------------------SAIQFLTSMRVLFKWA 147
           G+   R++T + +    +      +                   +A + + S + +  + 
Sbjct: 153 GNKKLRELTRRDVELLRDDITAGRTAVVQKTKKHGVRRATGGTGTAKRTMVSFKSVLAYM 212

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-----LYS 202
               +V  N   ++       +       E  +  K         R           L +
Sbjct: 213 KDIGFVDQNVAANLRLAPDGKKERYLSVAEAHRLGKCLDEWEQMDRRMTGITIIRLLLMT 272

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDK 261
           G R  +        +  +    + ++T +  ++       + +L   P    T+   N+ 
Sbjct: 273 GARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRPISPQVLDILKGLPRLHPTWVFLNNA 332

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      ++    +AG+     H +R   A+ +   G +   +    G    +  +
Sbjct: 333 GTGPYCGTQAVWRLVREEAGLPDVRKHDLRHSFASFALANGLSLPVIGTLLGHSRPETTQ 392

Query: 321 TYTKGADRIRLGIKNSR 337
            Y   +DR    ++ ++
Sbjct: 393 RYAHLSDRH--AMEAAK 407


>gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 319

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 71/268 (26%), Gaps = 14/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  +  +         +  +   +E +     ++  D        +       S+   P
Sbjct: 14  WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWS 187
            +    + +++    W V +  +  NP    +  K     +    +      Q       
Sbjct: 74  VTYNLRMKNLKAFLNWCVEEGIIPTNPIAKFKPRKTDDRIVEIDIETLQKLLQLPDRKTF 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMK 243
            G +        L +G+R  ++      H       +              + +      
Sbjct: 134 AGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISPVTAN 193

Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +                 F +   + +N  +++   +  + + GV    + +R   A +
Sbjct: 194 AIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHMFALL 253

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
               G     L    G  T++  + Y  
Sbjct: 254 YLKNGGYELSLQKIMGHTTLEMTKKYVH 281


>gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
 gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus
           SD CMC 3f]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 92/294 (31%), Gaps = 14/294 (4%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             + A +++   +    E  +  +++    + L+S +  +      +  +   + +  ++
Sbjct: 23  ARLKAVLASELHNVEIVEKEDCSKQQAQENEHLLSSFISAKKIEGCSEKTLAYYRNTIER 82

Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           ++          ITT  IR+      E  + +  +           F W   ++Y+A +P
Sbjct: 83  LLLTL-SVAICHITTSDIRAYLSDYQEEHQSSKVTIDNMRRIFSSFFAWLEDEDYIAKSP 141

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + + K  +      + E ++Q         +     + L  +G+R  +  +   + +
Sbjct: 142 VRRIHKVKTDSLVKEVLSDEQLEQ-LRDSCTNKRDLALIDILSSTGIRVGELVKLNREDI 200

Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270
             +               V         L      +           ++   ++  +   
Sbjct: 201 DFHERQCVVFGKGNKERVVYFNARTKLHLQQYLDERTDDNPALFVSLHSPHTRLTISGVE 260

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  +       + K   H  R+  AT++ D G    ++    G   +D    Y 
Sbjct: 261 VRIRKLGKSLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 367

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 104/340 (30%), Gaps = 40/340 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G  IR      +         L     + E     + +    K   +E+ +     +L 
Sbjct: 10  KGNPIRRSKMATAKNKRQAEKELALFIAEIEVGEYIKPQKMLFKDFFAEWIQKYAKTNLQ 69

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143
             +  ++    D  II   G+     I T H+ +       ++    ++     T +++L
Sbjct: 70  KTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPAKGLATTTINSIHTRVKML 129

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYS 202
           FK A    ++  NP   V + K K + ++P+ ++++ +  +    E    ++ F+  + +
Sbjct: 130 FKKACEWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVKILALTEQEKDMNKMLFQLAIVT 189

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------------------I 233
           G+R  +       H+      +  Q+T                                 
Sbjct: 190 GMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKTSKSKRIISIPPTFTTKLK 249

Query: 234 TVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
             +      ++              F   + + +   + S  ++    K G+ +   HG+
Sbjct: 250 QYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTRWQYFTQKHGLRHIKLHGL 309

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           R   AT     G     +    G   +      Y    + 
Sbjct: 310 RSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHVLEE 349


>gi|296101651|ref|YP_003611797.1| site-specific recombinase, phage integrase family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056110|gb|ADF60848.1| site-specific recombinase, phage integrase family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 387

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 115/381 (30%), Gaps = 60/381 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G    +F    G+RIR      +          L     + + I        T + 
Sbjct: 4   TLRGGVWHCHFVTPSGKRIRRSLGTGDKKQAQELHDKLKAEAWRVDKI--GELPTRTFEE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
               + +          S    ++  +  +R     D   IT   +   V          
Sbjct: 62  CCIRWIREKEHK----RSLDDDKTKIEYFLRHFSGRDISTITADQVNEAVSKMVNRKHIQ 117

Query: 127 ----------------------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVER 163
                                   + ++  Q L+ MR LFK A     ++   P +  ++
Sbjct: 118 VWESRRDAAIRRGKEPPPYVEKPVSHATKSQHLSFMRSLFKAAANDWGWIKTPPVIKTKK 177

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P  K   IR  T+++ ++  +   E  +P + F   L +GLR S+      Q +      
Sbjct: 178 PISKR--IRWLTRDEAERLIACMPESIKPVVIFA--LATGLRRSNIIDLEWQQVDMQRKV 233

Query: 224 IKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKA- 277
                        I V L D   ++L         +   + K         +   +    
Sbjct: 234 AWVNPENAKAGKAIGVALNDTACRVLRDQIGKSSRWVFVHTKPSTRPDKTVTPAVRKMRV 293

Query: 278 ----------TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                      KAG+ +   H +R   A+    +G     L    GW++++    Y   A
Sbjct: 294 DDNSAWRIGLAKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLA 353

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
                  +++R+I ++  + D
Sbjct: 354 PNH--LSEHARKIDAIFGNHD 372


>gi|254820912|ref|ZP_05225913.1| phage-related integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 403

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 89/359 (24%), Gaps = 37/359 (10%)

Query: 1   MTPSLRLPPFVTKERTR-----HGK-------------IIYYFRKGHGRRIRLPYPHEST 42
           MT    L   V     +     HG                +  R    +           
Sbjct: 1   MTQKRNLRAGVEDRWNKTVHDEHGSNPQTVPSATYGKGKRWRARYVDEQGREHVQSFTRK 60

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                      +T       +PR    T++     + +          +     ++  QI
Sbjct: 61  VDAQQWLTTQTATIVAGTHVAPRDAKLTVQQWCDTWIEGYKVHR--EGTVREARTHIRQI 118

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCL 159
           + + GD    ++    +++     +     A       + +  +   AV    +  NPC 
Sbjct: 119 VTEFGDAPLTQVRPSQVKAWTARLRADGMKASYIYALHSRLSQILSDAVHDGVLGRNPCS 178

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAG 213
               P      +   T E +        +  +  +             SGLR SD     
Sbjct: 179 RRTAPPMGKAKVYVATTEQVWALHDAVPDPLKVAVLLGAFAGLRVAEVSGLRVSDVDFIR 238

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                   +  K  KT            + LL    + K    +                
Sbjct: 239 GVVHPKQQWPDKPLKTEGSSAPIPIPQDLALLLSASVQKYPAEMMVTNGPGTDRCGPWII 298

Query: 274 KAKAT--KAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +      + G+       S H +R + A++    G     + A     +     +TY+ 
Sbjct: 299 ERAIRDVRGGIEGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 357


>gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 326

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+      +  ++E+    R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEALAFERYTIANASQKEWGGQ-RADRRTLTELLDIWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    ++  + +      R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDMYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLTG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + +   +    K G   TV         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITSCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCEILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
            TY   A
Sbjct: 301 MTYAHLA 307


>gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 357

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 108/373 (28%), Gaps = 46/373 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLP-----------YPHESTFIPA 46
           M+  LR       ++ ++G   YY   +  G      L                      
Sbjct: 1   MSVKLRT------KKLKNGGKSYYLDIYHNGQRSYEFLGIKTVSKGVNKDTTESRKEKQR 54

Query: 47  YMSALTGSTPKR-----EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
              A                     +          Y K      L  + R+ + +  ++
Sbjct: 55  IAEARAAQKEIELISGGSNYIPRHIQRINFFDFSEIYLKEY----LKKDGRMIY-AAVEK 109

Query: 102 IIRKSGDFDYR--KITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAI 155
               +G+   +   IT   ++   +   H    +  +   ++T  + L K A  +  +  
Sbjct: 110 FREFTGNDKLKIIDITPDLMQRFYDFLIHKAGLSGETPHNYITRFKKLLKSAKNKGIIKE 169

Query: 156 NPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
            P   +                  ++++   + +      + AF F  Y+GL  ++  + 
Sbjct: 170 VPTADIRFSNPNKGDTLSKEVLDIDEIKVLYNTYCGNDVVKRAFIFCCYTGLGLAEIRKL 229

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              H++ N   I+  KT + I  EL    + LL    +     F        + T  +  
Sbjct: 230 KWGHIKKNRLVIQRSKTDSKIDNELSKQTLSLLGKRKLNDNLVFDLKGI---SDTAVNKN 286

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K    +A + K  + +  R   A +    GA    +    G  +      Y    D  R
Sbjct: 287 LKNWLRRADIEKKITFYCARHSFAVLLLLNGANLKSVADAMGHSSTKTTLKYLNHVD--R 344

Query: 331 LGIKNSRRISSVV 343
           L  +    + S  
Sbjct: 345 LKDEAINNLPSFK 357


>gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
 gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041]
          Length = 295

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 96/286 (33%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124
             L+ +Y          + N+ +S+    DQ +           T         + +  +
Sbjct: 2   DELVDKYLAYLKSNHGRSANTLLSYRRDLDQAVAFFRQRGVSDWTAVDQYQLLALVAEQK 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  +P++  + L+++R  +++ VR + +  NP   ++  ++  +           +   
Sbjct: 62  KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVILTAAEIKQLL 121

Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                    G + R     L  +G+R S+     +  L  +I  ++    +     V + 
Sbjct: 122 AAPNPDHPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRERLVPVS 181

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287
           D  ++ L             +G++  F+N    ++         +    +AG+ K+    
Sbjct: 182 DQAVQELEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEKTVTPR 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   A     +GA    +    G+  +   + Y K   +     
Sbjct: 242 TLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSAD 287


>gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950]
          Length = 340

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 27/305 (8%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-Q 101
              A+ +   G          PR    +L  + ++Y  S     ++  +   +  +++ +
Sbjct: 3   EARAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQPA-VSPKTWSGYAQHWELR 61

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           I  + G     +I+ K ++  +      P + +  L  +R +   A     + INP   V
Sbjct: 62  ISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGV 121

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
              +        +         +              L ++GLR S+     V  +    
Sbjct: 122 SSGRIPARERHRYLSATEVAALAHACGDQGD--IVTILAFTGLRWSELVGLRVGDIDLKA 179

Query: 219 ---------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ- 268
                     ++                     +++      +       ++   +    
Sbjct: 180 RRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGG 239

Query: 269 --------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       +     K G+   + H +R   A+++  +GA    +  T G  T    
Sbjct: 240 FLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVT 299

Query: 320 E-TYT 323
              Y+
Sbjct: 300 ANIYS 304


>gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------------- 235
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSRDRALMLPESLAPSLREQLS 193

Query: 236 ------------------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 285

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 15/272 (5%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TTL+     +         +  +  ++ +    +     +                    
Sbjct: 4   TTLQTQAERFLTELK---RSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHW 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P++  +  T++     WA+++E +  +P L +ERP       R   +E++++  +    
Sbjct: 61  APATRNRKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPA 120

Query: 189 GS-QPRLAFEFLLYSGLRCSD-----------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              +  L F  +  +GLR  +           +       +       +T        V 
Sbjct: 121 EQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVN 180

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +   +++ L  T         N     +        ++  A +AGV  + H +R   AT 
Sbjct: 181 MLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE 240

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G +   +    G + +     Y + +D+
Sbjct: 241 LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQ 272


>gi|291536935|emb|CBL10047.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 366

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 106/365 (29%), Gaps = 51/365 (13%)

Query: 19  GKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           GK    +R         +              +   L      +           T +  
Sbjct: 10  GKWRVVYRYTDWTGETHQSSKRGFPTKREAQMWERELLLKKEAKL--------DMTFESF 61

Query: 75  ISEYRKSAHWGSLAVN---SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
              Y +      +  N   ++ +      +I+   G     +I  + I +          
Sbjct: 62  YEIYVEDMQNR-IRDNIWGTKTNIART--KILPYFGKRKIGEIEPRDIIAWQNELFAIRQ 118

Query: 127 -KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181
               P SA    +  + +  +F  AV   ++  NP        ++       WTKE+  +
Sbjct: 119 PNGKPYSASYLQKIHSQLSAIFNHAVNFYHLPSNPAQKAGNMGKEEHREMLFWTKEEYLK 178

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
           F     +      AFE L + GLR  +              +++  K+   +  E     
Sbjct: 179 FADVMMDKPVSYYAFEILYWCGLRMGELLALTPADFNFETHTLRINKSYQRLHREDVITP 238

Query: 242 MKLLAMTPIGKETFFINNDKQKM----------------NATQFSIWFKAKATKAGVNK- 284
            K L      K   F+ ++ Q                  + +         +  +GV + 
Sbjct: 239 PKTLKSNRTIKMPQFLCDEMQDYLKMLYEPKEDERIFTISKSYLHHEMNRGSKVSGVKRI 298

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLG----IKNSRR 338
             H +R    ++  + G T   +    G +++D    Y     +++ ++     I+   +
Sbjct: 299 RVHDLRHSHVSLLINMGFTVLAIADRMGHESIDITYRYAHLFPSEQTQMAEQLDIERMEK 358

Query: 339 ISSVV 343
           ++   
Sbjct: 359 LNGEK 363


>gi|157827404|ref|YP_001496468.1| integrase [Rickettsia bellii OSU 85-389]
 gi|157802708|gb|ABV79431.1| Integrase [Rickettsia bellii OSU 85-389]
          Length = 381

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 16/312 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEYRKSA 82
               RI++      + I A + A        +        +   K  T K     Y    
Sbjct: 52  KKYHRIKIGVFPYLSIIDARLKASELKGKIAQGYNPIEEKARLSKEPTFKEFYDRYLDEY 111

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSMR 141
              +        + +  D+  +   +     I    I+        T    A +FL  + 
Sbjct: 112 SKINNKR--WKDYAASVDRYAKHLYNRKISTIQKADIQELFNKLTKTGKYGANRFLEVLS 169

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFL 199
            +F  A+  E + +NP + +++  ++    R  T+E++ +F +  SE      +  F   
Sbjct: 170 PVFSKAIEWELLTVNPVIGIKK-HKEQSRDRYLTREEIPRFFTAISEEQNQVMKDFFLIA 228

Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           LY+ +R  +      + +        +   K G    + L D  +++L       ++ ++
Sbjct: 229 LYTSVRKDNVLTMRWEQISFADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSDSIWV 288

Query: 258 NNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
              +   +    +    +K    KAG+     H +R+   +  A  GA  + +      +
Sbjct: 289 FPSETSSSGHLQEPKKAWKRICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHR 348

Query: 315 TVDQAETYTKGA 326
                  YT+ A
Sbjct: 349 DPRSTAVYTRLA 360


>gi|238020277|ref|ZP_04600703.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147]
 gi|237867257|gb|EEP68263.1| hypothetical protein GCWU000324_00153 [Kingella oralis ATCC 51147]
          Length = 379

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 105/340 (30%), Gaps = 26/340 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + + G      R   G RIR           A            +     +K     + 
Sbjct: 4   YQRKSGVWYIDIRAPSGSRIR-QSTGTQNKQEAQKLHDKLKHDLWQQEKLDQKPLRLWEE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES--RKHT 129
               +               S +S   ++  +          +T   +   +    +   
Sbjct: 63  AALRWLHEKQEK-------KSIQSDIYRLRGLSMFKGIYLHNLTRDLVMHSIAKTMQGKA 115

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  ++L  +R +       E++ I+    +   +     IR  T  + ++  +   E 
Sbjct: 116 NATKNRYLALVRAILN-KAANEWLWIDKAPKITLYREPKRRIRWLTPAEAERLIAALPEY 174

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
                   F L +GLR S+      Q L              K+G  I + L    + ++
Sbjct: 175 MAD--MATFSLATGLRQSNVINLRWQQLDLQRGVAWVDASESKSGRAIGIALNQTALNVI 232

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                  + +   + K +   +  S  ++     AG+ +   H +R   A+     G   
Sbjct: 233 QKQMGKHKEYVFTHSKGRRLHSISSRIWRNALAAAGISDFRWHDLRHTWASWLVQKGVPL 292

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           + L    GW++++  + Y        L  ++  R ++++D
Sbjct: 293 NVLQEMGGWESIEMVQRYAH------LAPEHLHRHAALLD 326


>gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 20/257 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
            + + N+  ++     + +    +           T     + + S+    SS  +    
Sbjct: 25  RAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEVDTVSLFLASLRSQGAAKSSVQRAAAC 84

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195
           ++   ++      V  +P      P + +      T+ ++ +             + R  
Sbjct: 85  IKSFSRFLGE---VGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRDRAM 141

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250
            E L   GLR S+ C   ++ L  +  +++ +  G  + V     E      + L +   
Sbjct: 142 IELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETRSALERYLKVRGT 201

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
            +   F  +              + +  +A +       H +R   AT     G     L
Sbjct: 202 HQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRHSCATHLLRRGMDLRTL 261

Query: 308 MATYGWKTVDQAETYTK 324
               G  +V   E YT 
Sbjct: 262 QCLLGHSSVRTTEVYTH 278


>gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
 gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC
           29799]
          Length = 417

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 109/378 (28%), Gaps = 61/378 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     +   +G+R  L     +     Y   L   +          K   TL    +
Sbjct: 18  KDGSYCARYYDRNGQRKYLYNSSLAVLKKEYKDVLKQVS-----TRPVVKTEYTLDEWYA 72

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
           ++ K   +  +  ++R+ +   +   +    G +   +ITT  ++  +   K        
Sbjct: 73  QWIKVYKY-EVRDSTRLQYSHVYTKHVSPALGHYLLTQITTLEVKRFLNDMKKRGFSFEM 131

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +    +  LF  A+  ++   NP   ++  + +    R  +KE+   F     +G+  
Sbjct: 132 RNKARIVLLDLFDKAIMDDFAFKNPARGIKVVRDERVEPRVLSKEEQVDFFDTC-KGTFY 190

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNIFSIKTQKTG 230
              F   + +GLR  +        +                               +   
Sbjct: 191 EELFTVAVLTGLRPGELFALRWSDVNLKEKYLDVTRTLLYQKLEGDTGKAFHIHPPKTAT 250

Query: 231 TIITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFK 274
           ++  V   +     L      K                   F+      +N++ +S   +
Sbjct: 251 SLRRVYFDERCKLALMSQFRKKSNISLRETSSPLEGLEDLLFVTKYNTPLNSSLYSSAIQ 310

Query: 275 AKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                   ++SA         H  R   AT + +A      +    G  T+      YT 
Sbjct: 311 RIVDLINESRSAVDQFETFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMTMDLYTH 370

Query: 325 GADRIRLGIKNSRRISSV 342
             +  +L  +   ++ + 
Sbjct: 371 LFEDKKL--EELTKLDAH 386


>gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 390

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R   +      +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                               F  L Y+G+R  +        +     +I           
Sbjct: 182 LFQFLEVAKNHHSPQNSFELFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22]
 gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22]
          Length = 357

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y +      +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGRE 349


>gi|303234412|ref|ZP_07321051.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
 gi|302494528|gb|EFL54295.1| site-specific recombinase, phage integrase family [Finegoldia magna
           BVS033A4]
          Length = 374

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 105/354 (29%), Gaps = 41/354 (11%)

Query: 15  RTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R   G   ++    +    G ++        T   A            E I        +
Sbjct: 5   RDESGNKTWFCKFNYTNWKGEKLTKKKRGFLTKKEALKWEQEFLNQHSESI------EMS 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK-- 127
            +     Y++      +  N+  + E+  +Q I+   GD    +I    I          
Sbjct: 59  FREFFELYKRDRKPR-IRENTWRTKEAIVNQKILPYIGDLMLNEINNVTIIQWQNELMKI 117

Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179
                  ++P+        +  +   A R   +  N    V     K  + +  WT+++ 
Sbjct: 118 KDKNGKNYSPTYLRTIHAQLSSILNHACRYYNLKTNVARDVGSMGEKEADEMLFWTQDEY 177

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
           ++F     +  +   AFE L + GLR  +      +       ++K  ++          
Sbjct: 178 ERFIEAIKDKPESFYAFELLYWCGLRMGELLALTQEKFDFERHTLKIDESLQRIDGKNVI 237

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                     T+ +P+     +             +     + +         + K+ V 
Sbjct: 238 TAPKTKKSIRTIVMPEFLTDEIKEYIDSFYKLKSKDLIFNFSKSYLHHEMDRGSKKSQVK 297

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +   H +R    ++  + G +A  +    G +++D    Y     + +  + + 
Sbjct: 298 RIRIHDLRHSHVSLLIELGFSATAIADRVGHESIDITYRYAHLFPSKQKEMALS 351


>gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
 gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 80/274 (29%), Gaps = 34/274 (12%)

Query: 90  NSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMR--VLF 144
           N+  ++       +    +   D   +    +   +   +    + A +   ++    + 
Sbjct: 26  NTIAAYGRDLSDFLDFTTAKGLDLITLDRAAVEDWLVRLEAEGLAKATRARAALGGEAIL 85

Query: 145 -KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAF 196
               + +      P L +  P +     +  + E+++             +E  + R   
Sbjct: 86  PASPMTRAGGRTTPTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQIRNRCLM 145

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------- 248
           E L  +G+R S+     V   + N    +   K      V L     + LA         
Sbjct: 146 ELLYATGMRVSELVGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAWLATRDAA 205

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
                     P  +  F  +  +  +    F    K  A  AG++    + H +R   AT
Sbjct: 206 EEAARIARRLPPSRFLFPSSGKEGHLTRQGFHALLKDIALAAGLDPARVTPHVLRHAFAT 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                GA    +    G   +   E YT   +  
Sbjct: 266 HLLQGGADLRVIQTLLGHADLSTTEIYTHVLEER 299


>gi|324115571|gb|EGC09510.1| phage integrase [Escherichia coli E1167]
          Length = 387

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F   +G+R +           A                       T +     + +
Sbjct: 10  WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACVRWLE 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                     S    +S     ++       R IT   I S ++   +            
Sbjct: 69  EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124

Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                              ++    L+ ++ L + A  +E+  ++    ++ P+ K + I
Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPILKVPQPKNKRI 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
           R     + Q+      E  +     EF L +GLR S+      Q +         + +  
Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275
           K+   I V L D   ++L         +     +                    +  +KA
Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              +AG++    H +R   A+    AG     L    GW++++    Y        L   
Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355

Query: 335 NSRRISSVVDS 345
           +    +  +DS
Sbjct: 356 HLTEHARQIDS 366


>gi|300921984|ref|ZP_07138130.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300421654|gb|EFK04965.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 387

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 105/371 (28%), Gaps = 60/371 (16%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F   +G+R +           A                       T +     + +
Sbjct: 10  WYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDMTFEEACIRWLE 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                     S    +S     ++       R IT   I S ++   +            
Sbjct: 69  EKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAE 124

Query: 131 -------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                              ++    L+ ++ L + A  +E+  ++    ++ P+ K + I
Sbjct: 125 ACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRI 183

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227
           R     + Q+      E  +     EF L +GLR S+      Q +         + +  
Sbjct: 184 RWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEES 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKA 275
           K+   I V L D   ++L         +     +                    +  +KA
Sbjct: 242 KSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKA 301

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              +AG++    H +R   A+    AG     L    GW++++    Y        L   
Sbjct: 302 ALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPN 355

Query: 335 NSRRISSVVDS 345
           +    +  +DS
Sbjct: 356 HLTEHARQIDS 366


>gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1]
 gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1]
          Length = 436

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 74/289 (25%), Gaps = 29/289 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
           +  H    A  +   +     Q+   +G     ++  +H+R         R     S   
Sbjct: 149 EDLHLTGKAKRTHDGYIRAVRQLSDFAGCSP-DQVNEQHVRQFFLHLKNDRNFAYGSLRV 207

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRL 194
             + ++  F    ++++  I         +  T      T E + +   S  ++      
Sbjct: 208 AFSGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHELIGSATTQRMFVYF 263

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
              + L   L  +   +      +     +   K      V LP   ++LL         
Sbjct: 264 WTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRH 323

Query: 255 FFINND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATI 296
                                    M+ T      K        G   S H +R   AT 
Sbjct: 324 PSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATH 383

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
             +AG     +    G  ++     Y    D       +   R+   + 
Sbjct: 384 LLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEIERLFGSLP 432


>gi|326407220|gb|ADZ64291.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 403

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 110/377 (29%), Gaps = 63/377 (16%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + + +T+ G++ Y  R          G+++R      +        +   +   +    
Sbjct: 5   NIKEYKTKSGEVRYILRGAYIGTDVLTGKQVRTSITGRTKKDIKVKLSRLQNEFIKNGCT 64

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---- 117
              K   T   +++ +         +  +    E      +I   G +   K+TT     
Sbjct: 65  KKIKVLKTFDEVVAAWFDFYKINRKSA-TVKQTEKNLRLYLIPAFGKYKIDKLTTAILQH 123

Query: 118 --HIRSGVESRKHTPSSAI---------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
             +I + + S+      A          +  T +  + K+A+    ++ NPCL+V  P  
Sbjct: 124 QINIWATIASKPLNGRQARKKGEMSDYKRLYTIINRIMKYAISNGLISSNPCLTVLMPNV 183

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQ 215
           K E  +   K   +       +    + + ++ +            +GLR  ++      
Sbjct: 184 KVESTKKEIKFFTKSQLQSLFDYLDNQASPQWKMRLLRNLLPFLASTGLRIGEAVALSWS 243

Query: 216 HLQNNIFSIKTQKTGTI--------------------------ITVELPDGFMKLLAMTP 249
            +     ++   KT                             ++    +   + L    
Sbjct: 244 DIDFKQGTVTVSKTVNDSNQIQLSPKTETSNRTIDIDKSTLNLLSKWQLEIKKEFLKYGN 303

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
             +   F N +   +N+              G+     HG R   AT+   AG +   + 
Sbjct: 304 PNQPLLFPNINGSVLNSRLLRNTLLDCFENVGLPNIGFHGFRHTHATLCLSAGMSYKAIQ 363

Query: 309 ATYGWKTVDQAE-TYTK 324
              G  T+      Y  
Sbjct: 364 TRLGHSTLQMTMDIYAH 380


>gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
 gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei
           YIT 12066]
          Length = 307

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 94/274 (34%), Gaps = 29/274 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRSGV 123
            Y  +        N+  S++    + +              + G+ + R +  +      
Sbjct: 13  AYLSNEKRSG--PNTVASYDRVLRKALVSLKYNFPQLKSWSEIGEKEMRFLLKEF-NFSF 69

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           ++ + +  S    + ++   FK+ ++++ ++ NPC  +  PK +    +  +  ++ Q  
Sbjct: 70  DAERLSSVSVAHDIYALSSFFKFLIKKKKLSSNPCSLIHAPKVRKPLPKVLSSNEIDQLF 129

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239
           +         + R   E L  SGLR  +     +  L      ++    G    +V +  
Sbjct: 130 TVDPSSPKEIRDRAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGS 189

Query: 240 GFMKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             +  + +    ++ F         N   ++M            A+K+G  +  S H +R
Sbjct: 190 QALNWIRIYLKVRDAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLR 249

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT     GA    +    G  ++   + YT 
Sbjct: 250 HSFATELLGNGADLRMVQEMLGHSSLAATQVYTH 283


>gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 319

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 72/272 (26%), Gaps = 14/272 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  +  +         +  +   +E +     ++  D        +       S+   P
Sbjct: 14  WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWS 187
            +    + +++    W V +  +  NP    +  K     +    +      Q       
Sbjct: 74  VTYNLRMKNLKAFLSWCVEEGIIPTNPIAKFKPRKTDDRIVEIDIETLQKLLQLPDRKTF 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMK 243
            G +        L +G+R  ++      H       +              + +      
Sbjct: 134 AGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISPVTAN 193

Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +                 F +   + +N  +++   +  + + GV    + +R   A +
Sbjct: 194 AIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHMFALL 253

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
               G     L    G  T++  + Y     +
Sbjct: 254 YLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQ 285


>gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
 gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%)

Query: 85  GSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGVESRKHTP---SSA 133
              A  +  ++ +   + +    R  G          ++    R+ +          ++ 
Sbjct: 28  RRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAKAASDGVGNATR 87

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192
            + L+++R  F+W  ++  +       +  PK +    R  T  D         + +  P
Sbjct: 88  AKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAVVDSLGDDAASP 147

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            LA        L      R       N           ++         + LL +     
Sbjct: 148 ALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQRIVPLLPVLRREI 207

Query: 253 ETFFINNDKQ-------------KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
            ++  ++                ++N        +      G+    + H +R   AT  
Sbjct: 208 ASWLRHHPAPTPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLPEHATPHALRHSFATHL 267

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              GA    +    G  ++   + YT   D  RL  
Sbjct: 268 LANGADLRAIQELLGHASLSTTQRYT-AVDADRLMA 302


>gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171]
          Length = 291

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 19/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I +Y     + +L+ N+            ++       K         + +     S+A
Sbjct: 7   YIEKYIDFLSYKNLSSNTIKKSNVVLTNFFKERNSISITKNEQYEYIEMLLN-TVKKSTA 65

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             ++  +   + +       +I         KR           +         +     
Sbjct: 66  YDYIRILNKFYDYIHTFVDSSIANLFENVSFKRTPAQNISVLYSEEILELYERIKNDNRV 125

Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            A++  ++     +G+R S+     +  +   N    I  +     I         KL+ 
Sbjct: 126 TAYQEFIFDFLFSTGIRVSELSSIKINLIDLENRTILITGKGNKERIIFYNDKLEHKLIR 185

Query: 247 MTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              +  +    N                +                 +N   H +R   AT
Sbjct: 186 FLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIVKIGKLYDINLHPHTLRHSFAT 245

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              + G     +    G  ++   + YT 
Sbjct: 246 NLLENGCDIRYIQEFLGHSSILTTQRYTH 274


>gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 436

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 26/302 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           T+  L   Y +     +L  ++ + +      ++          D+D   I    +    
Sbjct: 126 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 184

Query: 124 ESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRP 173
              +            + A++ +   + +   A++ E+++ NP CL   +  +   G   
Sbjct: 185 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLS 244

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             +    +        S  R  F F +Y+GL   D      +++   I            
Sbjct: 245 EKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQK 304

Query: 234 TVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           T            + +L       +    N+          + + K  A +AGV K  + 
Sbjct: 305 TDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVFPVPPNQVANRYLKKVAKEAGVEKNITF 364

Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
           H  R   AT      G     +    G  ++   + Y K  D   +  +   + + +  +
Sbjct: 365 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRKE 424

Query: 345 SD 346
           S 
Sbjct: 425 SQ 426


>gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260]
 gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260]
          Length = 309

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 109/299 (36%), Gaps = 24/299 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK   TL  ++ EY        LA ++  +      Q   +S D   R    + ++    
Sbjct: 8   RKVLPTLSQMVEEYLDE-RSLDLAPSTVKNQGYILRQFAAQSQDEGNRADAVRLLQH--- 63

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQ 180
               +P+    +  +++  F W + Q Y   NP   +       K     ++       +
Sbjct: 64  --AKSPNVHNLYRATLKCFFDWCISQGYRTDNPGEGIRTKKGTHKFIDTPVQALDSFIRE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVE 236
            F +    G + + A  FL+ +G R +++ +   + +           +T KT T  TV 
Sbjct: 122 GFDTTTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVF 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKSAHGV 289
                 KLL      +  ++  +           M +T+F    +    + G+N + + +
Sbjct: 182 FSKPTAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNLTVYSL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           R   AT     G +A EL    G   +     Y   A+  R  ++ + R +S V++  P
Sbjct: 242 RHIFATNFLRGGGSALELQRILGHSNMTMTTRY---ANLNREDLQEAHRHASPVNALFP 297


>gi|300902550|ref|ZP_07120527.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301302005|ref|ZP_07208138.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300405363|gb|EFJ88901.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300842557|gb|EFK70317.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315253725|gb|EFU33693.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 387

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  IRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
 gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679]
          Length = 401

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 115/372 (30%), Gaps = 47/372 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALT 52
           M     +   + K  T+ G+  Y F          G  R+               +  L 
Sbjct: 1   MAKKE-IDKRIKKHLTKKGEEKYQFSLYLGVDPLTGKKRKTTRRGFSTPLAAERALKRLE 59

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
               ++    S  +K    +++   + ++    ++  ++  S +  FD  I++  GD   
Sbjct: 60  TDIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDKFI 118

Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----- 165
            KI     +  V +   + P    +       +F +A   + +  NP   V  P+     
Sbjct: 119 DKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEALD 178

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI 224
            + + I  +TKE++ +F          R  F  LL ++G+R  ++       +     ++
Sbjct: 179 IEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSKTL 238

Query: 225 KTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK-----------ETFF 256
              KT T                    + L +  + LL    I                 
Sbjct: 239 NINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYIKNKTIVTIQSENLIFHH 298

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                    +  +         +     + HG R   A++  ++GA+  ++    G   +
Sbjct: 299 DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGASLKDVQERLGHADI 358

Query: 317 DQA-ETYTKGAD 327
                 YT   +
Sbjct: 359 QTTSNIYTHVTE 370


>gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 282

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 76/266 (28%), Gaps = 15/266 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +   Y +      L+ ++  S++       +   +  +R +    +     + K T +
Sbjct: 3   DEISKRYLEFC--TGLSKSTINSYKYGLRTFQKY-ANKRWRDVMVNDVILFYTNHKATKN 59

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S +  L ++   + W + ++Y+  NP     +  R+ +  R +       +     +   
Sbjct: 60  SKMSVLGTVSRFYDWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKRYD 119

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVELPD 239
             +   F+L +G+R S+     VQ +                             +    
Sbjct: 120 YYVITMFILKTGVRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFFDRDLAFHLREYI 179

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                                  + + T +  +    A    +  + H +R   AT   +
Sbjct: 180 KERSYRDPKCDNLFLGVYRGHFSQRSLTLYKEYINEVAPNIHIRITPHILRHTFATSMLE 239

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            G     L    G + +     Y   
Sbjct: 240 RGIDLKSLSLILGHEDLSTTSIYLHK 265


>gi|322378161|ref|ZP_08052646.1| prophage L54a, integrase [Streptococcus sp. M334]
 gi|321280891|gb|EFX57906.1| prophage L54a, integrase [Streptococcus sp. M334]
          Length = 377

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 121/370 (32%), Gaps = 48/370 (12%)

Query: 18  HGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSAL----TGSTPKREYINSPRKKP 68
           +GK  YY +         +++ +    ++         L         ++        K 
Sbjct: 8   NGKYRYYEKYFDLEENKWKQVSITLTSKTRQAQKQARILLDEKIEKKREKIEKKKEVVKD 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+K    EY K      L  ++  S +      +RK  ++    +T+  +++ +   + 
Sbjct: 68  ITVKQAYEEYLKIRE-TELKRSTFKSQKYTIIGEVRKLENYLLVDVTSHIVQNILLELEC 126

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------RPWTKEDMQQ 181
           +          + + FK+ +   Y+  NP   V  PKRK           +  T+  M Q
Sbjct: 127 SAVHRKNKKVLLNLFFKYYLDIGYIMENPVEKVVLPKRKKNVKEIRRKQNKYLTRVQMFQ 186

Query: 182 FKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
           + +      +  + RL  EF+  +GLR  +     +  +     +++ + T         
Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTIDDIDFENKTLEVKHTLHTSGSKAE 246

Query: 232 -----------IITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         V + +  + ++       G+  F    +      T F+ + K+   
Sbjct: 247 IFLDSPKSLASYRVVGISNRVVSIIKEYLLLEGEGRFIFTKNGTPFMITGFNNFLKSSFK 306

Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           K+ + K      + H  R    ++ A+       +M   G          YT    +++ 
Sbjct: 307 KSKIEKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTQQMKF 366

Query: 332 GI-KNSRRIS 340
            I +   ++ 
Sbjct: 367 NITEKLDKLD 376


>gi|295107446|emb|CBL04989.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 356

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 101/343 (29%), Gaps = 40/343 (11%)

Query: 14  ERTRHGKIIY---YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +  +    Y   Y+R   G +R +      S    A           +    +      
Sbjct: 4   YKDDNNGTYYVQCYYRDARGSKRHKTKRGFSSEVEAAVW-------ESQFKSLNGGAMDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  Y        +  ++ I+ E   + +++   GD     +    +         
Sbjct: 57  TFSEFVEVYASEVKPR-IREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTE 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178
                     P+        +  +F  A R   +  NP   V++   K    ++ WTK++
Sbjct: 116 HRDADGKPWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
             +F     +      AFE L ++G+RC +               ++  K+         
Sbjct: 176 YLRFSEAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDT 235

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                      T+ +P      +A     ++    +     +     +   +     +GV
Sbjct: 236 VTDPKTPKSVRTIVMPAFLRDEMAEFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R    ++  + G +A  +    G + VD    Y  
Sbjct: 296 KRIRIHDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338


>gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 353

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 95/333 (28%), Gaps = 29/333 (8%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+     K            GRRIR  +                    K     S + 
Sbjct: 2   VVKKVDGKTKPWLADLRPDGDGGRRIRKSFMTKGEALAWERHQLTNKPWLKEPEPESEKH 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +   L  L+  +    H  +LA   R         +     +    + T++H  +  E R
Sbjct: 62  EQRRLLDLVHIWFG-RHGQTLADGDRR--RDKLVWLCEALDNPIATEFTSEHFSAYRERR 118

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                       K TP++  +    ++ +F    R   +   NP   + + K +   +  
Sbjct: 119 LAGELYVPGQCKKVTPTTINREQLYLQAVFNELARLGVWNGGNPLSDLRQYKVQESELAY 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            ++++++Q      E     L     L +G R S+  +     +     +    K     
Sbjct: 179 LSQDEIEQLLDAGKEQRDLWLVVMLCLSTGARWSEIEKVSRSQVGMGRITFTKTKGKRNR 238

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           TV +    + +L                       F    +    K  V +S H +R   
Sbjct: 239 TVPVAPWLLAMLPKRTGRLFDDCYAE---------FEKAIRRANIKLPVGQSTHVLRHTF 289

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A+     G     L    G   +     Y+  A
Sbjct: 290 ASHFMMNGGNILVLQRILGHTDIKMTMRYSHFA 322


>gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 308

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 90/303 (29%), Gaps = 37/303 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++ +   +++      +  ++  ++     + I+   G+ D   +  + ++  V  +  
Sbjct: 5   TIREIAVAWKEYKRPY-VKQSTMAAYVLILENHILPTFGECD--SLHEEIVQDYVLRKIE 61

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +     S    L  ++++ K+ V+ E++               + +   +  + ++  + 
Sbjct: 62  SGLSVKSVKDILIVLKMVMKFGVKNEWMDYYEWDIKYPTISTNKELEVLSVANHKKVLNH 121

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                S   L     L +GLR  + C      +     +I   +T   I +         
Sbjct: 122 IQNHFSFAGLGIYISLCTGLRIGEVCALKWSDINTMDGTITVNRTIERIYIIDGTQKHTE 181

Query: 245 LAMTPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKAT 278
           L +     +                                         +  ++     
Sbjct: 182 LVINTPKTQNSCREIPMTKELFAMMKPLKKVVNDDFYILTNAEYPTEPRTYRNYYTKLME 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335
           K G+ K   HG+R   AT   +AG     +    G   +    + Y     ++ +  I  
Sbjct: 242 KLGIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAK 301

Query: 336 SRR 338
             +
Sbjct: 302 VFK 304


>gi|325453347|gb|ADZ13628.1| integrase [Cronobacter phage ENT47670]
          Length = 387

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 104/375 (27%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F    G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I + ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKNITETRIYNAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    V+ P+ K
Sbjct: 121 LREEALRKKGKPVPPYVPRPAATATKATHLSFIKALLR-AAEREWKMLDKAPIVKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      +  +     EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPDPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKVPTVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHAKQIDS 366


>gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
 gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis
           TX4248]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 106/281 (37%), Gaps = 24/281 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSG---VES 125
            + +I E+         +  +  +++S            +    ++  KHI+S    ++ 
Sbjct: 3   WEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPLQLEKKHIKSWIIDMQE 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           ++   S+    ++ ++ LF + + ++Y+  NP + +ER K + + I P    +++Q  + 
Sbjct: 63  KEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122

Query: 186 WSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +     +A         ++  GLR S+ C    + + NN   I+  K      V +  
Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182

Query: 240 GFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWFKAKATKAGVN----KSA 286
              K +      K+  +         ++N  +K+N        +    +  +      S 
Sbjct: 183 ILKKEIIKYQRIKKRKYGLLEGNLFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H +R   A++    G   + L    G  +++  + Y +  +
Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLN 283


>gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
 gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii
           LLAP12]
          Length = 326

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 33/302 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES--- 125
           L++ ++ +     L+ +S  S+    +     + DF        +IT   +R+  E    
Sbjct: 27  LLNSFKATLEQQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLRAYREYVSK 86

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK 183
             +  PS+    +  ++  + WA +   +  NP  ++   KR  T       K+++    
Sbjct: 87  ILRRKPSTINHHIQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDEIHALL 146

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIIT 234
                       +     + LL SGLR  +     ++ +         ++   K      
Sbjct: 147 RASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKHRE 206

Query: 235 VELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285
           + L     + L      ++        F     ++           + A +A + +   +
Sbjct: 207 IPLNSIARRALTRYLETRDSLGSDDILFTTKRGEQGTIRALQALISSLAKRANITRINVT 266

Query: 286 AHGVRKFSATISADA--GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           AH +R   AT    A  G    EL    G ++V+    YTK A + +L  ++  R    +
Sbjct: 267 AHTLRHTFATQFLQANPGC-LVELAMLMGHESVNTTAIYTK-ASKEKLA-EHMERSGVSI 323

Query: 344 DS 345
           D+
Sbjct: 324 DA 325


>gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J]
          Length = 357

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 111/345 (32%), Gaps = 23/345 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
              LPP +     R+     Y     G+   L          A  + +   +        
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLI 65

Query: 64  PRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            R K     TL   +  Y +      +   + + + S    I RK  D     I+TK + 
Sbjct: 66  DRIKGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E 
Sbjct: 126 AMLNTNVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ + +        RLA +  + +G R  D CR     + +N   I+  KTG  + + L 
Sbjct: 186 VEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLT 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L                 ET   +     ++    S +F      +G+       
Sbjct: 246 LTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H +R  SA                 G K+   A  Y     R 
Sbjct: 306 TFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGRE 349


>gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 326

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 75/295 (25%), Gaps = 40/295 (13%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK---HTP 130
            Y +       LA  +   +     ++   + D      ++ T HIR  V          
Sbjct: 17  RYLEHVRVEKRLAQRTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGRGG 76

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185
                 L+  R  F WA RQ  V  NP   V  P+      +    +D  +   F     
Sbjct: 77  RGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGSSG 136

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 ++     E L   GLR  +          +     +           +     K
Sbjct: 137 SDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAHVFGKGSK 196

Query: 244 LLAMTPIGKETFFINNDKQ------------------------KMNATQFSIWFKAKATK 279
             ++         +    +                        ++         + ++  
Sbjct: 197 RRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSRLRQRSQL 256

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 257 AGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR-LDFQHLA 310


>gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341]
 gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341]
          Length = 317

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 19/308 (6%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                + L      +    +  K   TL  LI+ + +  H  +L+ + R        +I 
Sbjct: 21  RKRDAAQLDKRLELQLKRENINKDYRTLDELITIWYR-MHGKTLSDHIR--LRKLLYRIS 77

Query: 104 RKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLS 160
              G+     +T++      E R  + + ++  +  + +R +F    R   +   NP   
Sbjct: 78  ECLGNPVGSDLTSEMFAKYRERRTLEVSLTTVNREHSYLRAVFNELDRLGVITYENPLTK 137

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ 218
           + + +     +R  + +++ +        +   L       L +G R  ++       + 
Sbjct: 138 IRQFREAEGELRFLSHDEIARLLEQCKVSTNKSLIHVVKICLATGARWGEAENLKPSQIA 197

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           N   +    K+    TV +       L        +          +   F         
Sbjct: 198 NGKVTFLNTKSKKNRTVPINQILFNELEELEPFSNSRMFVG-----SLAAFRTALSRADI 252

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +    ++ H +R   A+     G    +L    G K +     Y        L   +   
Sbjct: 253 ELPAGQNTHVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAH------LAPDHLED 306

Query: 339 ISSVVDSD 346
              +   +
Sbjct: 307 ALRLNPLN 314


>gi|242243126|ref|ZP_04797571.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
 gi|242233474|gb|EES35786.1| bacteriophage integrase [Staphylococcus epidermidis W23144]
          Length = 348

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 111/326 (34%), Gaps = 24/326 (7%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K   R     Y FR    R  +  +  +     A    L   T              TL 
Sbjct: 2   KVTKRGNSWQYDFRFEGKRYRKTSFKTKRDATQAANKLLNDLTK-----GLITNNKITLT 56

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             ++++++      ++  +  ++  Y +++     D    KIT    +  + + K   S 
Sbjct: 57  KYLNDWKEIYIKEYVSSKTYKNYCRYCEKVEYYFKDKPLDKITRNEYQLFLTNFKDNLSQ 116

Query: 133 -----AIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                  +F+  ++       +  +    N  +   +P  K E  + +  +++++ K ++
Sbjct: 117 DQLSRLNKFITKAISTAIFDGLITKDFTFNVKVESSKPPIKQESDKFFNIDELKKIKDYY 176

Query: 187 SEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTIITV 235
              ++   A       ++ +G R SD      + +         N    K+      ++ 
Sbjct: 177 LSKTKYYSASTHLILLMIETGGRFSDCINLTRKDINELNLEIFLNGTKNKSAPRYVSVSK 236

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
            L    +K +       E +   N+ +++  +  +   +   +K  +++  ++H  R   
Sbjct: 237 TLIQILLKYIENHTSSIEGYVFINNGKQITNSSVNKSIREACSKLNIHRNLTSHAFRHTH 296

Query: 294 ATISADAGATAHELMATYGWKTVDQA 319
           A++    G   + +    G  ++D  
Sbjct: 297 ASMLIHEGLNIYYISKRLGHSSIDVT 322


>gi|164688240|ref|ZP_02212268.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
 gi|164602653|gb|EDQ96118.1| hypothetical protein CLOBAR_01885 [Clostridium bartlettii DSM
           16795]
          Length = 370

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 107/364 (29%), Gaps = 37/364 (10%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R+++  +   +      + +                L     +    +        L+
Sbjct: 7   RKRSKNYIVYLEYTDETTGKKKQKNMGSYPLKRDASKRLNELKEEIYNDDLVAPNDMKLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             + ++ +     +L++ +   +       I    G+     +   HI++ V+      +
Sbjct: 67  KYLMDFLEKYKP-NLSITTYNCYIRICKKYINPMLGNIKLNDLKPIHIQNYVDDLVGILS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P +    +  + +  K A + + V  +    +E PK K      + ++D+ +      + 
Sbjct: 126 PQTIKIHINILNLALKRAYKLKLVKYDIVDCIEVPKNKKFKSEVYDQKDIAKLLETI-KN 184

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------------------K 225
           +   L     +  GLR S+        +     +I                        +
Sbjct: 185 TDLELPINLAIGLGLRISEVLGLSWSDIDFTENTITIEKITARDSGKVILKEPKTDTSKR 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAG 281
           T      +   L D   K L     GK         + ++  +     S  F     K  
Sbjct: 245 TISAPKEVMAMLKDYKRKYLQDKLQGKIKDCNLLFLDKNENPIAEDVLSKKFSRFLKKHN 304

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           +     H +R    T+  +A      +    G   V+     Y+       +  + S +I
Sbjct: 305 LKHIRFHDLRHSHVTLLINAKVPIKVISERVGHSNVNTTLNIYSHTL--KEMDQEASEKI 362

Query: 340 SSVV 343
           S  +
Sbjct: 363 SESI 366


>gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638]
 gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638]
          Length = 327

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 95/307 (30%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   G+RIR           A+    T +   ++     R    TL  L+  + K  H  
Sbjct: 18  RGRDGKRIR-RKFERKAEAVAFER-YTIANASQKEWAGQRADRRTLTELLDIWWK-YHGQ 74

Query: 86  SLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
           +    ++      F+ +++     GD    ++  + +      R     + ++  + +  
Sbjct: 75  NHEHGTKE-----FNHLLKTISGIGDIPVSRMNKRALMDYRSMRLRDGISAATINRDIYR 129

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  +F   ++ +  +    +    P  +      + ++   +       G    L     
Sbjct: 130 LSGMFTKLIQLDEFSGQHPIHGLPPLTEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLC 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R ++        + N   +    K G   TV         ++     K     + 
Sbjct: 189 LSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISKELEKKVKEEASA 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++  +F    +        N++ H +R   A+     G     L    G  ++ Q 
Sbjct: 241 KLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQT 300

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 301 MAYAHLA 307


>gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L++ +  +      +  +   + +  ++++          ITT  IR       E  +
Sbjct: 53  EHLLNSFISAKKIEGCSDKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+A +P   + + K  +      + E ++Q      
Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     + L  +G+R  +  +   + +  +               V         L 
Sbjct: 171 TNKRDLAIIDILASTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNARTKLHLQ 230

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +           ++   ++  +   I  +       + K   H  R+  AT++ D
Sbjct: 231 QYLNERTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804]
 gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii]
 gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii]
          Length = 349

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 100/310 (32%), Gaps = 41/310 (13%)

Query: 66  KKPTTLKWLISEYRKSA--HWGSLAVNSRISFE---SYFDQIIRK-----SGDFDYRKIT 115
           ++PT   + +S++          ++ N+  S+    S   + +               + 
Sbjct: 5   RQPTDFAYALSKFLGEHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIERICIADLH 64

Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAV---RQEYVAINPCLSVERPKRKT 168
            K I++      + R ++ ++  Q L+++   F++ +    +  +     L+++  KR++
Sbjct: 65  HKQIQAFLLWLEQDRGNSVNTRNQRLSAITSFFRFVMSIYPEHILLCQQILNIQFKKRQS 124

Query: 169 EGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             +   + E ++            G +  +    L  +G R  +     V  L+    + 
Sbjct: 125 STVDYLSIEAVELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPAT 184

Query: 225 KT--QKTGTIITVELPDGFMKLLAMTPIGKETFF---------INNDKQKMNATQFSIWF 273
                K   +  V L      LL          +          NN ++++     S   
Sbjct: 185 ARLLGKGAKVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYIL 244

Query: 274 KAKATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  A +         G   S H +R   A     AG     +    G   +   E Y + 
Sbjct: 245 QKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARA 304

Query: 326 -ADRIRLGIK 334
             D  +  ++
Sbjct: 305 DLDSKKAALE 314


>gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
 gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 85/340 (25%), Gaps = 26/340 (7%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHT--PS 131
                         +    +      +             IT + +   V   +      
Sbjct: 134 YTKKD-----IRMVQIALSRFKDFLKEKYPMNECSIKPELITKEMMEQFVAYLQSRSVGE 188

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188
            A       + + ++A+  + +  +PC  V          +      +        + +E
Sbjct: 189 GAKSIYQRFKKVIRYAIEHDVMLKDPCKDVTCKVDSQMLRKDVLSLEEIQKLMACHYDNE 248

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---L 245
               R  F F LY GLR  D      +++      +K +++ T          + L   L
Sbjct: 249 NPIVRRTFIFCLYCGLRFCDVKDLTYRNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                                       K    +AG++K  S H  R   A    + GA 
Sbjct: 309 LSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGAN 368

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 369 IKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
 gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200]
          Length = 290

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 20/261 (7%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127
           L  ++ E+         L+ N+  S+    +Q +    +       +    I + +   K
Sbjct: 2   LNNVVGEFLDFLTKNKKLSKNTLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLK 61

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 ++  + L+S++  + +   ++ +  +P   +  PK + +     T E +    S
Sbjct: 62  KKGKSQATVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQVDMLLS 121

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + +   E L  +GL+ S+     ++ +  +   +  +       + +   
Sbjct: 122 LDFGDDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSH 180

Query: 241 FMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
            ++ L              +        QK+         +    K   G   + + +R+
Sbjct: 181 AIEALKNYIEKGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ 240

Query: 292 FSATISADAGATAHELMATYG 312
             A      GA    +    G
Sbjct: 241 SFAQHMLQNGADIRAVQEMLG 261


>gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 335

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 97/307 (31%), Gaps = 23/307 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  +G+RIR     +      +   +  +  K+E++ +      TL  L+  +       
Sbjct: 27  RGRNGKRIR-RRFEKKQEAVLFERYVLANADKKEWLGASVD-RRTLSELLDTWWLLYGQ- 83

Query: 86  SLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139
                ++ +    + + ++ IR  GD    +++ + I      R     + ++  + +  
Sbjct: 84  -----TQENGEIEKRHLNKTIRALGDPAVNRLSKRTIAQHRGQRLEDGISAATINRDVYR 138

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
              +F   ++ +            P ++T     +  +           G   R+A    
Sbjct: 139 FSGMFSTLIKLDEFRKENPCKGLEPLKETPPAMTYLAKSEISRLLNTLTGDDRRVA-LLC 197

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L +G R  +S     + + +   +    K G   TV         ++    G+       
Sbjct: 198 LSTGARWGESSTLRGEQVNHGRVTFLKTKNGKKRTVP--------ISEELEGEIKTSDTG 249

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              K++   F    K         ++ H +R   A+     G     L    G  ++ Q 
Sbjct: 250 PLFKVDYENFCERLKQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQT 309

Query: 320 ETYTKGA 326
             Y   A
Sbjct: 310 MVYAHLA 316


>gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism]
          Length = 317

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522]
          Length = 324

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 97/304 (31%), Gaps = 25/304 (8%)

Query: 49  SALTGSTPKREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
              T     + + +S R K       +L  +   +        L+  +   ++ +F  ++
Sbjct: 3   RERTKMKKGKRFTDSTRVKKQNKINLSLTEMYERFLLFKKSEGLSKQTLFDYDVHFKYLL 62

Query: 104 RKSG-DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                D    ++TT+                 S+    L ++R   +++  + ++     
Sbjct: 63  DFLERDLMADEMTTEIFLEYRNYMLNDLGLKASTVNIRLRTIRAFLRYSYEEGWIDQPIH 122

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              +  K   + +   +  +++   S     +  G + ++ F  +L S  R S+      
Sbjct: 123 EKFKPVKAPQKEVDALSPREIKLLLSQINDDYYAGFRDKVLFFTMLDSMARISELLAIKR 182

Query: 215 QHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMN 265
           +++      IK      KT     V +     KLL         F         D Q ++
Sbjct: 183 ENVDLRNGVIKLEADGTKTKVDRFVPISTRTSKLLQEYINETSDFEQEILFLTYDGQVLS 242

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A             AG+NK  S H  R   A +    G     L +  G  T+     Y 
Sbjct: 243 ANTVRKSLMDYGKAAGINKQVSPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYV 302

Query: 324 KGAD 327
           + A+
Sbjct: 303 QMAN 306


>gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii
           DSM 18315]
          Length = 389

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 98/373 (26%), Gaps = 49/373 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLP-------YPHESTFIP-------- 45
            ++ P  + K +  +G +  Y   + KG  +   L         P +             
Sbjct: 9   KVKEPVRIRKRKLANGNMSLYLDVYVKGVRKVESLGLYLVPEQTPIDKQQNAHAMQVAGK 68

Query: 46  -AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                 L          N  ++   TL   + EY +       + ++           + 
Sbjct: 69  IKAERILALQNHGVRQWNKVKRSCITLIDFLKEYEQEKF--GFSASTLKG-RRDLRLKVE 125

Query: 105 KS------GDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKW 146
                    D     +     R  +   ++            +  +A      +      
Sbjct: 126 TYLNETCQPDIVLANVDADFCRGFIAFLRYAKNSVRKDGSTISNGAAHHHQAVLNGALNK 185

Query: 147 AVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           AVR+  +  NP  S    E+ +         T E+++   +        + AF F  ++G
Sbjct: 186 AVREGILTSNPLKSLASKEKYQPSESIREYLTLEELKAAMAAPCPRDDVKRAFLFSCFTG 245

Query: 204 LRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           LR SD        +    +        +      +       + L       +       
Sbjct: 246 LRLSDVRSLTWGKIIKAPDGHTLYIRVRMQKTQKLLNVPLSKEALDCLYPKDDADEPIFT 305

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                A+            A + K    H  R   AT+    GA  +      G   V+ 
Sbjct: 306 L-PAGASNIERNLTKWMQNAKITKHITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNT 364

Query: 319 AETYTKGADRIRL 331
              Y K  D+ ++
Sbjct: 365 TSIYAKIVDQKKI 377


>gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 292

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 77/258 (29%), Gaps = 20/258 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129
           I+ Y++       + N+  ++ +     ++             K+T       +     +
Sbjct: 5   INNYKEYLFDSGKSENTIYAYVTDVTLYLKFLDKKGIDIYKSDKLTVMAYIQYLLESGKS 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185
             S  + + S+R  + +   Q  +   P +  +  K   +  +  T     + ++  +  
Sbjct: 65  ERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDEVDKIIRTVEKD 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244
             +G +     E +  +G++ S+     V  +   +  ++          + +     K 
Sbjct: 125 CPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLIPIGRSACKA 184

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +                  K+         K  + +A ++K  + +  R   A
Sbjct: 185 LNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRAHIDKDVNLNTFRHSFA 244

Query: 295 TISADAGATAHELMATYG 312
                 GA    +    G
Sbjct: 245 VHLLQNGANVRAVQKLLG 262


>gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
 gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170]
          Length = 292

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 91/266 (34%), Gaps = 23/266 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR-- 126
           L   + K   +  + +  + +S+                  D+  +    IR  V S   
Sbjct: 2   LKESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFKAVDETLDFATVDADVIRGWVVSLMD 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  SS  + L+S+R  +++ +R++ V+++P   V  PK+K        + DM +    
Sbjct: 62  EGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRLLDA 121

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                 E  + +        +G+R S+       ++  +      T K      +   + 
Sbjct: 122 ECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQRVIPFGEE 181

Query: 241 FMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290
              +L               E FF+  + + M      +  +   ++  A   +S H +R
Sbjct: 182 LENILQVYLSARNEYCHTECEAFFVRKEGKAMYPGMVYLLVRQNLSRVVALKKRSPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTV 316
              AT   +  A    +    G +++
Sbjct: 242 HSFATAMLNNQAGLEAVKELLGHESL 267


>gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007]
          Length = 336

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 100/305 (32%), Gaps = 18/305 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   + K       
Sbjct: 20  RNGKRIR-RKFDKKSEAMAFEKHTQYNHHSKEWLSKPTDKRQ-LSELKELWWK---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S+    ++    +G+    +IT   I      R+     P++  + L ++  +F
Sbjct: 75  HEEHGQSYLRKIERFETMTGNPCAFQITKSLITQYCAQRRGEGIKPTTINRDLITLGGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + Y   +P    ++ K +T      T E++    +        R      L +G
Sbjct: 135 TTLIESELYNGEHPFRGFKKLKEQTAETGYLTLEEIDALLAA--LSGDNRKIAVLCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  S    KT T  TV + D     +     G            
Sbjct: 193 ARWGEAARLKAENVIHNRVSFVKTKTNTPRTVPISDDVAAYVVGKTRGFLFPEA------ 246

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +   F    K         ++ H +R   AT     G     L    G   + Q   Y 
Sbjct: 247 -SYADFRRTLKEVKPDLPAGQATHALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYA 305

Query: 324 KGADR 328
             A +
Sbjct: 306 HFAPQ 310


>gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 87/293 (29%), Gaps = 24/293 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L                ++ ++     +     G   +   + + +R     ++      
Sbjct: 13  LRQRLLDDMAMRRFGPETQRNYLRDVGRFATWLGRSPHTA-SAEEVRQFQIDQQQAGVPV 71

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    ++++R  F   + +  +       + R K+  +     T  ++++         
Sbjct: 72  PTMNSIVSALRFFFTETLDRPDL----ARKLIRAKQVRKIPVVLTMAEVKRLLDATRC-L 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + + A      +GLR ++     V ++ +    ++ ++               LL +   
Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGGRDRNAMLPEGLLLLLRDW 186

Query: 251 GK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
            +              F        ++  Q        A  A ++K    H +R   AT 
Sbjct: 187 WRAGRQQGILYRDGWLFPGQGAAAHISTRQLHRVVVEAAEAADIDKRVGPHTLRHSFATH 246

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDDP 348
             + G     + A  G   ++    Y + A +  R       R++     ++P
Sbjct: 247 LLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKVTSPLDRLALASPIEEP 299


>gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5]
          Length = 380

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 109/376 (28%), Gaps = 41/376 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K +    +  Y        RI   Y +  T+  A                 P +   
Sbjct: 7   NIYKRKDGRWEARYIKEHRINGRIHYGYCYGKTYHEARDKVNQARYALMNDQLLPVRGKR 66

Query: 70  T-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----V 123
                  +E+       S+  ++ + + +     I    G +    ++   +       +
Sbjct: 67  NRFADYCNEWL-YLKRSSVKPSTFVKYTTILEKYIKPDLGQYFSEAVSEILVEQFSYRLI 125

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  +P +    L+ +  +  +  +Q  +A      +  P++  + +R  T E+ ++F 
Sbjct: 126 HERGLSPKTVRDILSVLHSILNYTTKQNPLAKPV--DIVYPRQDRKEMRVLTCEEQKRFT 183

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
            +  +   P +      L +GLR  + C    + +      I  + T   +         
Sbjct: 184 EYLLQDMDPCKFGVLLALLTGLRIGEVCALKWEDISLENKVIFVRHTMQRLKNLNPASEE 243

Query: 236 --------ELPDGFMKLLAMTPIGKETFFINNDK------------QKMNATQFSIWFKA 275
                         ++++ M    ++                      +         + 
Sbjct: 244 RTRIITGVPKSGRSVRIIPMNQDIEKLCNKWRADDLEAYVLTGKAGYFLEPRTLQYRMRQ 303

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLG 332
                 +     H +R   AT   +AG     L    G  +     E Y   + +  R  
Sbjct: 304 YTKDCNLKNVHFHTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKRKN 363

Query: 333 IKNSRRISSVVDSDDP 348
           ++   +I+  V+ + P
Sbjct: 364 MEKL-KIADTVEKEFP 378


>gi|253579255|ref|ZP_04856525.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849353|gb|EES77313.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 106/361 (29%), Gaps = 39/361 (10%)

Query: 12  TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            K++T+ G     FR     G++ +       T   A              +        
Sbjct: 4   YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                I  Y +      L  NS  + +      I+   G     +IT   I     + + 
Sbjct: 61  ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNAIQE 115

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
              S          +  LF  A +   +  NPC  V++  K     +  WTK +  +F +
Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228
               GS+  L FE L ++G+R  +                        ++        + 
Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKT 235

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             ++ T+++P+   + +         F  +     + A       K      GV     H
Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVH 295

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R          G     +    G K +     TY        L     ++++ ++D+ 
Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349

Query: 347 D 347
            
Sbjct: 350 R 350


>gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 84/282 (29%), Gaps = 31/282 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
           + NS  +++      +   G     +   IT  H+ +     + +  +  +    L+++ 
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEELRLITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
            LF   + Q+ V IN    V+R          +  T ++++   +        G + R  
Sbjct: 79  SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLTPDEVRNLLNSPDLSKLQGLRDRAI 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKE 253
              L ++G R S+ C   ++                         +  +++     +   
Sbjct: 139 LSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIALDQYLTDA 198

Query: 254 TFFINN----------------DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
               +                  K+ ++       F   A   G+   + H  R    T 
Sbjct: 199 GHGPDPASFLFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           + +       +  T G   +   + Y K   + R     + R
Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYRESASFAVR 300


>gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 443

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 114/372 (30%), Gaps = 47/372 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALT 52
           M     +   + K  T+ G+  Y F          G  R+               +  L 
Sbjct: 43  MAKKE-IDKRIKKHLTKKGEEKYQFSLYLGVDPLTGKKRKTTRRGFSTLLAAERALKRLE 101

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
               ++    S  +K    +++   + ++    ++  ++  S +  FD  I++  GD   
Sbjct: 102 ADIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDKFI 160

Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----- 165
            KI     +  V +   + P    +       +F +A   + +  NP   V  P+     
Sbjct: 161 DKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEALD 220

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI 224
            + + I  +TKE++ +F          R  F  LL ++G+R  ++       +     ++
Sbjct: 221 IEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSKTL 280

Query: 225 KTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK-----------ETFF 256
              KT T                    + L +  + LL                      
Sbjct: 281 NINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKTIVTIQSENLIFHH 340

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                    +  +         +     + HG R   A++  ++GA+  ++    G   +
Sbjct: 341 DGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGASLKDVQERLGHADI 400

Query: 317 DQA-ETYTKGAD 327
                 YT   +
Sbjct: 401 QTTSNIYTHVTE 412


>gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614]
          Length = 312

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 93/312 (29%), Gaps = 33/312 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFD 110
           + + +    P      L      Y +       L+ ++  ++      ++      G  +
Sbjct: 2   SEEEQSARLPEAMARALGD----YERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTE 57

Query: 111 YRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +  + +RS +        + ++  +  T+ RV   W  R     ++   S+  PK  
Sbjct: 58  PGDLDLRTLRSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAH 117

Query: 168 TEGIRPWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                    ++        ++        G +     E L  +G+R  +     +  L  
Sbjct: 118 RTLPPVLRTDEAADLVRAAVEHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDR 177

Query: 220 NIFSIK-----------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
               ++                    V+      + L          F+    ++++   
Sbjct: 178 ERNVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRA 237

Query: 269 FSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  +  +     +   HG+R  +AT   + GA    +    G  ++   + YT  +
Sbjct: 238 VRTVVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVS 297

Query: 327 -DRIRLGIKNSR 337
            +R+R   + + 
Sbjct: 298 TERLRRAYQQAH 309


>gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 297

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 86/273 (31%), Gaps = 27/273 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI+ +         A  ++ ++  +  + +   G   ++ I    ++    S +    + 
Sbjct: 19  LINTWL-----HDKAQTTQRAYRRFAYEYLTALG-KPFQMIAPLELKQYAMSLEGDAGTV 72

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +++ L+ +A +  Y+ +N    +E PK + +      +ED            +  
Sbjct: 73  AYRVNALKSLYSYATKLGYIQVNLGELLEAPKVRQKLAERILEEDEMLRLVAGETNPRNH 132

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLA--- 246
                + ++GLR S+      +++              K      V +    ++ L    
Sbjct: 133 ATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPSMLEELEALP 192

Query: 247 ------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
                             +          ++        +  A + G+    S H  R  
Sbjct: 193 GRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDNVSPHWFRHA 252

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +A+ S D GA    +  + G K++     Y   
Sbjct: 253 NASHSLDNGAPISVVQQSLGHKSLATTMKYLHV 285


>gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495]
 gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495]
          Length = 386

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 96/375 (25%), Gaps = 56/375 (14%)

Query: 18  HGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            G   YY      R   G R R  Y +  T              +              +
Sbjct: 12  KGIPYYYEIVEGNRNLDGTRSR-KYIYAKTVKELETK--VKEFKRNLDDGLKIDNKEVFQ 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTP 130
            L   +  + H      ++   +E  +   I     G    + + +  I+    +     
Sbjct: 69  GLFKSWLFNTHLLDKKPSTIERYEGLYRNYILNSSLGKSKIKNLNSLVIQEYYNNLYKGG 128

Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWT--KEDMQQFK 183
            S          ++    +     Y   +      ++ P  K            + Q+  
Sbjct: 129 RSVSTLKMLHKVIKPFLLFLYNNGYTKKDFGSKGLIKIPTEKINNEEELQVLTLEEQKIF 188

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237
               EG++ +L F   L +GLR  +       ++    +++K  KT   +          
Sbjct: 189 LNSLEGNKDKLIFMTALMTGLRLGELLNLKWSNVDLKEYTLKVDKTIKRVKNIETGKTEL 248

Query: 238 ------------------------------PDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                          +    L+       +  F  +    +++ 
Sbjct: 249 IEQEPKTKKSKRVVPIPLSLVKDLKELKKEQNKTKLLIGELYKNNDLVFATDFGNYLDSN 308

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY-TK 324
             +  FK    KA +  K  H +R   AT   +       +    G   +     TY T 
Sbjct: 309 NINKRFKKALIKANLEPKKFHSLRHTYATRLFENDVPLKTVSELLGHSNIQITANTYITV 368

Query: 325 GADRIRLGIKNSRRI 339
             D  +  I     I
Sbjct: 369 LEDEKKKVINQLDNI 383


>gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68]
          Length = 285

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 79/261 (30%), Gaps = 16/261 (6%)

Query: 71  LKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESR 126
           L  LI  + K       +  N+         ++     D    K+ T  +   R     +
Sbjct: 20  LSVLIDLWWKYHGQLMKSGHNT----RLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQ 75

Query: 127 KHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              PS+  + + ++  +F        ++  NP   ++  K     +   +K +  Q    
Sbjct: 76  GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDA 135

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +E    RLA E LL +G R  +      + + +   +    K     TV + +   + +
Sbjct: 136 LAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFEKI 195

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                      ++        +      K  A      ++ H +R   A+     G    
Sbjct: 196 KKRGGKLVFPTLD-------YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNIL 248

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 249 TLQKILGHAKIQTTMIYAHLA 269


>gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 378

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 106/363 (29%), Gaps = 42/363 (11%)

Query: 20  KIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           K +YY    +G+     R+             +AL      +   N       T++  ++
Sbjct: 16  KKLYYVTMDYGKDSTGKRVKTTKTFEKKKDAQTALKNFEADKIKQNLVFPSVLTVENWLT 75

Query: 77  EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
            +            +   + +     +I K G++  +++    +    + +   K + ++
Sbjct: 76  YWLDDIKAIKCEETTLYGYRNIINKHLIPKLGNYKLQELNPTILNKYFKGKLDEKLSQNT 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +    ++   K AV +E +  NP   V  P +  +  + +   +  +      E  + 
Sbjct: 136 IRKHYDLLKDTLKTAVDEEKILKNPLNKV-PPIKVQKNEKNFYNVEQLKTLFTIVENDRM 194

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------- 233
            +  +     GLR  +       ++      I   +  T                     
Sbjct: 195 EIVVKLAGMLGLRREEIAGLKWDNIDLENRIITIAEARTQAGKKTVAKGTKNSSSHRTLY 254

Query: 234 -----------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                           +   +LL      +       + +       S  FK       +
Sbjct: 255 APEEIINLLTSIKTTQEEQKRLLGEAYKDEGYIMAWENGEPYRPNYLSDLFKKIIDDNKL 314

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
                H +R   A+I+ + G   +++    G   V    + YT   D      K   +I+
Sbjct: 315 PSLRLHDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTHMFDATH--KKAISKIA 372

Query: 341 SVV 343
            V+
Sbjct: 373 DVM 375


>gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium]
          Length = 312

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 95/278 (34%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L  L+ +Y +       +  +    E+    ++ ++G  D  ++T   +     +++   
Sbjct: 14  LDALLGQYLREREAHGKSPATVHWQETAARLLMEETGARDLAELTPAILLDWFAAKRSQG 73

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+  Q+  ++R   KW  ++ Y   +  L +   +   + ++P+T ++++
Sbjct: 74  GRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYRPPKQVVQPFTPDELR 133

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            F +  SE    R     +  LL +G+R  ++    +  +     +++ +       V  
Sbjct: 134 AFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRERTMRVEGKTGGRIVYF 193

Query: 238 PDGFMKLLAMTPIGKETFFIN--------NDKQKMNATQFSIWFKAKATKAGV---NKSA 286
            +  ++ +      +                   + A + +      A +AG+   +   
Sbjct: 194 SERSLRAINEYLNNERRPRRPGEATLFLDRHGDPLRAGEITQETIRIARRAGIMRDHVGP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R   A     AG     L    G   ++    Y  
Sbjct: 254 HTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLH 291


>gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 395

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 39/363 (10%)

Query: 1   MTPSLRLP---PFVTKE------RTRHGKIIYYFRKGHGRRIRLPYPH------ESTFIP 45
           M    R     P V           +  +I Y   +  G+ I                  
Sbjct: 1   MPAKKRFKTSYPGVYYVEGQAVATGKPERIYYVMYRRDGKLIEEKAGRQFQDAMTPAKAA 60

Query: 46  AYMSALTGSTPK--------REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
              +                 E   +      TL  L +EY  S    + A+++      
Sbjct: 61  RIRAERIEGKAPSNNARREAEEAAKAAEVGRWTLAKLWTEY-ASHKPENHALST--DRSR 117

Query: 98  YFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +   I    G+ +  +   +    +RS +  +  +P +    L   + L ++ V++    
Sbjct: 118 FETYIKPAFGEKEPAEVLTLDLDRMRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCD 177

Query: 155 INPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSC 210
                      P+   E       +++ +      +    + A    L  ++G+R  +  
Sbjct: 178 SPDPRKQTISMPRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELF 237

Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           +   + +        I+  K G    + L D    +LA  P  + + ++   +       
Sbjct: 238 KLEWRDVDFERGFIHIRHPKGGKSQKIPLNDAARAVLASHPHVENSPYVFPGQGGKQRVT 297

Query: 269 FSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
             +       +A +       HG+R   A+  A +G      L      K+ +  + Y+ 
Sbjct: 298 IQVASNRIKARASLPADFRPLHGLRHLFASTLASSGQVDLLTLQKLLTHKSPNMTKRYSH 357

Query: 325 GAD 327
             D
Sbjct: 358 LRD 360


>gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315590317|gb|ADU49614.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 375

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 94/342 (27%), Gaps = 34/342 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--PTTL 71
            R   GK    F   +G+R   P    +             + +RE       +    TL
Sbjct: 15  RRLPSGKFQASFIGPNGKRQAAPNTFSTRVEAERWLLRVHESLEREEWRDSGAQLGRRTL 74

Query: 72  KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           K     Y           A  SR +   +   ++    D     IT   +RS        
Sbjct: 75  KDYAESYLTENPNVGERWAETSRRNMRLHLTPLL----DMPVASITPAVVRSWHAQALAG 130

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               +S  Q    +R +   AV  E +  NPC        + +     +  ++       
Sbjct: 131 TGGRTSIAQTYRLLRSVLNMAVLDEAIQKNPCQIPRAGTDRPKERPIASPAEVAALIEA- 189

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
               + R A     + GLR  +     V  +     +++  KT                 
Sbjct: 190 -ITPRYRAAVALAAWCGLRRGELMALRVTDVDLEKATVRVDKTYVELLESRRRFEKEPKS 248

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNKS 285
                 V +P   + L+A                             F       GVN S
Sbjct: 249 QAGRRVVSIPPHVLPLMAEHLETWAGPEFFFVGHDGTRMAGNALYQAFVRARKVVGVNLS 308

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R    T++A  GA+  +L    G  +   A  Y    +
Sbjct: 309 FHDLRHTGQTLAAATGASLADLKRRLGHSSTAAALRYMHAVE 350


>gi|313109025|ref|ZP_07794998.1| integrase [Pseudomonas aeruginosa 39016]
 gi|310881500|gb|EFQ40094.1| integrase [Pseudomonas aeruginosa 39016]
          Length = 399

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 104/371 (28%), Gaps = 35/371 (9%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREY---- 60
           P    + T  G+ ++   +R   G  R+  L    E T   A + A       R      
Sbjct: 29  PGFLCKITSTGRRVFMLQYRTNSGQPRKPSLGLYGELTVEQARVKAQDWLAEVRRGGDPG 88

Query: 61  -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+  L  ++ +        V+++  ++   D+ II   G      +    
Sbjct: 89  GAKAEARKAPTMAELCKKFMEDYSKKRNKVSTQDGYQGVIDRNIIPLLGRKKVHDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           I   +E   + P+ A +    +R +F  A    +           P            ++
Sbjct: 149 IAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGFRPDGTNPCRHVPMYPPGKETRLIVDE 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      L      +    + 
Sbjct: 209 EMVRIFRQLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWLDFENRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKATKAGVNK 284
                +        L  T    E            A   +       W +     +  + 
Sbjct: 269 VGGISKPMSEEAYRLLSTAPRLEGCPYVLPSPNDPAKHLTFGEHYGGWCRTLKAASVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  S T  A++G      M   G KTV     Y    D+            R  I
Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVREAAELVASRRQAI 388

Query: 334 KNSRRISSVVD 344
             +R+++  V 
Sbjct: 389 TGARQLAEAVA 399


>gi|283853709|ref|ZP_06370938.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283570887|gb|EFC18918.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 339

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 91/316 (28%), Gaps = 11/316 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWLI 75
           + G + +  R             ++       +  +     K +++++   +  TL   +
Sbjct: 6   KRGNLQWEARIRKRGYPATCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAESYTLSECL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y++            IS  +      R         I +K I     +R+    SA  
Sbjct: 66  DRYKEEYLPRLKDPRREISRANCLQ--SRAIAHRIMSTIRSKDIADYRRAREKEGISANT 123

Query: 136 F---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF +A     +    NP     +PK      R     + ++      +  
Sbjct: 124 IRLDLALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLESGEEEKLFEAIGDDF 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +     +F L + +R  +  +   + +     S    +     T        K + +   
Sbjct: 184 EFCAIIKFALETAMRRGEIVKLAWEDIDLRNKS-VLLRDTKNGTCRTVPLSRKAIEVLQG 242

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELM 308
                        ++    S         AG+ N   H +R  + +   +       E+ 
Sbjct: 243 LPRHISGRVFPGHLHPDTLSSKMGKACQLAGLANLHFHDLRHEATSRFFEHTDLDVMEIK 302

Query: 309 ATYGWKTVDQAETYTK 324
           A  G K++     YT 
Sbjct: 303 AITGHKSLQMLARYTH 318


>gi|206975676|ref|ZP_03236588.1| integrase family protein [Bacillus cereus H3081.97]
 gi|206746138|gb|EDZ57533.1| integrase family protein [Bacillus cereus H3081.97]
          Length = 388

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 100/352 (28%), Gaps = 42/352 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-- 71
           ++    K  Y+      +    P   +         AL         + +      T   
Sbjct: 7   KKDDKTKTWYFVLTHGKKEDGKPRQFKKRGFKTKQEALKALHELEHSLMTGTYIAPTKML 66

Query: 72  --KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
             ++L++++ +      +   +  ++       II   G+ +  ++T   I+        
Sbjct: 67  YGEYLLNQWLEDKQ-TKVKKQTLQTYRWLVEKHIIPAIGNMELTQLTPMAIQKLYNQLTK 125

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  +  +  T +    K A R   ++ NP   V+RPK + + I+ W  +++Q F  
Sbjct: 126 EKALSDENIQKVHTLINDSLKKAERWGIISKNPASLVDRPKAEKKEIKVWDVKEVQTFLK 185

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228
                S+  +AF   L +G+R  +      + +      I+  +                
Sbjct: 186 HAQSHSRYYIAFLLALTTGMRQGEILGLRWRDVDFETGCIRITQTLSSDGKEILPYTKTK 245

Query: 229 --------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                 +    ++  +      +           N +     F 
Sbjct: 246 SGSRTVDLPEETIIQLKKHRKLIESEKLEAGSEVYNNWDLVVCTELGTPTNKSNIRRSFN 305

Query: 275 -AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                        H +R   AT+    G     +    G   V    +TY+ 
Sbjct: 306 SIIKKAKIPKIRFHDMRHTHATLLLLQGVNPKIVSERLGHADVRITLDTYSH 357


>gi|291523379|emb|CBK81672.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 355

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 102/338 (30%), Gaps = 35/338 (10%)

Query: 13  KERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++  + GK +  +R     G  R+              ++            I       
Sbjct: 4   EKDKKTGKWLIQYRYTDWQGKRRKSTKRGFATKREAEEWLR--------NFLITQKADFD 55

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE--- 124
              +     Y        L  ++  + +   + +I+   G+     IT   IR       
Sbjct: 56  MKFENFWKMYCADMETR-LREHTIRTKKYIVELKILLYFGNKRVNDITAADIRQWQNELI 114

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFK 183
              ++P+        +  +F +AVR   +  NPC       +   E +  WT E+ ++F 
Sbjct: 115 KMGYSPTYLKTINNQLSAIFNYAVRYYDLKSNPCAKAGSMGKSKAEEMDFWTGEEFRKFI 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                     +AF  L ++G+R  +      + +     +I   K+              
Sbjct: 175 DSVMNKRLSYMAFMTLYWTGMRLGELLALNPKDVDLEKRTITITKSYQRLGKKDVITPPK 234

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                  + +P+     +            N+    +         +    ++GV +   
Sbjct: 235 TPKSKRVITIPEFLAADIKDYIDSSYELQENDRLFPITKYYLEHEMQRGIKESGVKRIRV 294

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R +  ++    G +A  +    G ++VD    Y  
Sbjct: 295 HDLRHYHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 332


>gi|152984207|ref|YP_001349101.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959365|gb|ABR81390.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 399

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 100/369 (27%), Gaps = 35/369 (9%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59
           P    + T  G+      Y    G  R+  L    E T   A   A       R+     
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+K     + +         +++  ++   D+ II   G    + +    
Sbjct: 89  AAKNAARKAPTMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + ++   +  + A +    +R +F  A                P            +D
Sbjct: 149 VATLMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      +      +    + 
Sbjct: 209 ELVRIFRQLESLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T    +        L                 N+  + M   +    +      AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGEHYGGWTRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  + T  A++G      M   G KTV     Y    D+            RL I
Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388

Query: 334 KNSRRISSV 342
             +RR   +
Sbjct: 389 TGARRTEEM 397


>gi|320528018|ref|ZP_08029184.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320131644|gb|EFW24208.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 346

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 101/328 (30%), Gaps = 36/328 (10%)

Query: 25  FRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +R  +G+R   +           A+           E  +   +     + L + Y  + 
Sbjct: 17  YRDQNGKRLQKKKRGFTTKREARAWE---------NETRDKLCRNVMDFRTLATTYFATL 67

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139
                  ++        D  +    D D R IT   ++           + ++    LT 
Sbjct: 68  EVTR---STHDLRMRRLDTYMSLLLDQDVRDITKPIMQEWRVWLSEQDISSTTKNNILTL 124

Query: 140 MRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            + +F++  +   +          ++   + + ++ WT ++  QF     +       F 
Sbjct: 125 CKSIFRFGFQAYGLPDPAVVLRPFKKKPTEVKTMQVWTIDEFNQFIFVV-DNPVYHALFR 183

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKL 244
            L ++G+R  ++       L  N      +                   T+ + +   + 
Sbjct: 184 LLFWTGMRRGEALALTRDDLLPNNQISINKSFRRRIDGIGPTKNAASVRTITVDELTYRE 243

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-GA 302
           L       E  +I   KQ ++    +  F  K   AGV +   H +R   A+I  +    
Sbjct: 244 LEAICAHAEGPYIFGGKQPISTQTVNQLFDRKVALAGVKRIRLHDLRHSHASILLNDPTI 303

Query: 303 TAHELMATYGWKTVDQAE-TYTKGADRI 329
           +   + A  G   V      YT   D+ 
Sbjct: 304 SVAAVSARLGHSNVATTMKVYTHVIDKA 331


>gi|170742030|ref|YP_001770685.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168196304|gb|ACA18251.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 380

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 115/378 (30%), Gaps = 48/378 (12%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + K     GKI +   +  G G+R R           A+       +     ++ P  + 
Sbjct: 4   IRKRELPSGKIAWLASYTDGGGKR-RFRQFATRKEADAF--LTRARSEVAHGVHIPDSQS 60

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+      + K A  G L  ++ + ++ + +  I    G     ++TT  + S  E  +
Sbjct: 61  MTVGQAADAWLKHAEEGGLEWSTVLHYQQHVNEHIRPLIGSLRLTQVTTPRVYSFAEELR 120

Query: 128 HTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S     + + S+  +F++A  +     NP   V+  + K +  R       +    
Sbjct: 121 AKGRSPEMVRRAVQSLGRIFRFAKGRGLAGQNPVADVKLKRSKRDQARVEIPTREELRAI 180

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGF 241
             +   + R      +++ LR S+        +      +  ++       I     +  
Sbjct: 181 LGAAQGRWRPLIVTAMFTALRASELRGLRWSDVDLKRRVLTVRQRADAWKRIGPPKSEAG 240

Query: 242 MKLLAMTPIGKETFFINNDKQK----------------MNATQFSIWFKAKATKAGV--- 282
            + + + P+   T                          +    +  ++     AGV   
Sbjct: 241 TRDVPLAPMVVNTLREWRLACPKGELDLVFPSGAGQVEHHPNIIARGWEPTQIAAGVVEM 300

Query: 283 ----------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                             + H +R  +A++  ++G T   + A  G  ++    +TY   
Sbjct: 301 VDGKDKAGNPAKAAKGRYNFHALRHAAASMFIESGMTPKRVQAIMGHSSIIVTYDTYGHL 360

Query: 326 ADRIRLGIKNSRRISSVV 343
                      R I   +
Sbjct: 361 FSDDEADQNAMRTIEERL 378


>gi|170730333|ref|YP_001775766.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167965126|gb|ACA12136.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A +++     Y + +++   D    +  I    IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                SA + ++    ++ W   +     +        +R  E  R    +D      + 
Sbjct: 124 PFK-VSANREISVFSHIWNW--ARSKGITDLANPCAGIRRNKESGRDVYIDDATYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS---AHGVRKFSATI 296
                K    + + +  ++   F          FK     AG+ K       +R  +AT 
Sbjct: 241 RIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|170739481|ref|YP_001768136.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168193755|gb|ACA15702.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 383

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 97/351 (27%), Gaps = 40/351 (11%)

Query: 14  ERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +  + G  +  +Y R    R      P    F+ +   A        E     R      
Sbjct: 14  KTLKDGTRRTYWYHRATGMRL--DGEPGSREFLLSVAEA--------EKTLKARHTGDNF 63

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             LI EY  S  +   L+ +++  +     +   + GD     +    +R      +   
Sbjct: 64  DGLIREYTASLEFTDKLSASTQREYRRMLAKAESEFGDMPREVLNDPAVRGDFLDWRAKV 123

Query: 131 SSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           + A         L+ +  +  WA     +  N     +R          W  E +  F  
Sbjct: 124 ARASGEREADNRLSVISAMLTWARENGRIHANHIQGFKRLYHVDRSEIIWLPEHIHAFMR 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------VELP 238
                 Q  L     L++G R  D              +++  K+           +   
Sbjct: 184 VAPIELQRALIMA--LHTGQRQGDLLVLPWSAYDGTAITLRQGKSARGRRVAPLVAIPCT 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------------SA 286
                +L                + +    F+  ++    +AG+++              
Sbjct: 242 QALRLMLDGMQRVSPLILTTKTGRALQKRYFARLWEEATIEAGLDRITLPGLAEPVSLHF 301

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNS 336
           H +R  + T+ ++AG    ++    G           +   R R L  +  
Sbjct: 302 HDLRGTAVTMLSEAGCQPQQIATITGHSLKTVTVILDRYLARTRALADQAI 352


>gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 301

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 21/271 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAI 134
            +     + +  +   +     +           ++  +HIR       + RK  P + +
Sbjct: 16  LEELERRNYSQATARPYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVM 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             ++++R  F+  +++ +        +  PK     I      D        +   + R 
Sbjct: 75  IQMSALRFFFRKVLKRRFDRD----DLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRT 130

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               L  +G+R ++ C   ++ +        I+  K G    V LP   +  L +     
Sbjct: 131 ILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRAL 190

Query: 253 ETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
                            Q M         +  A +AG+ KS   H +R   AT   D GA
Sbjct: 191 PHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATHLLDNGA 250

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               +    G         Y     R     
Sbjct: 251 ELPVIQVLLGHSDPRDTMIYLHLCTRQLRAA 281


>gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
 gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp.
           1_1_41FAA]
          Length = 329

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   + 
Sbjct: 53  EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +           F W   ++Y+  +P   + + K  T     ++ E M+  +    +
Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  ++ +                  V         L  
Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++              +++  +   I  +    K  +     H  R+  AT + D 
Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRELGKKLNITKVHPHKFRRTLATKAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|225575527|ref|ZP_03784137.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037277|gb|EEG47523.1| hypothetical protein RUMHYD_03619 [Blautia hydrogenotrophica DSM
           10507]
          Length = 356

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 108/352 (30%), Gaps = 38/352 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           +  Y+    G R +           A          ++  ++       T +  +  Y +
Sbjct: 14  VKCYYTDHTGTRKQKKKRGFKLQRDAKEWERNFLETQQADLS------MTFENFVKIYNE 67

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSA 133
                 L  +S I  +   + +++   G     +IT  ++R    +       K  P S 
Sbjct: 68  DMKHR-LREHSFIQKQYIINTKLLPFFGKLPVSQITPAYVRKWQNALIAYRDKKDKPYSE 126

Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEG 189
               T    +  +  +AVR   +  NPC       +   + ++ WT ++ ++F    S+ 
Sbjct: 127 TYLRTINNQLSAIMNYAVRYYDLKENPCRKAGSIGKGHADEMQFWTTDEFKRFLEKISDK 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
              R  F  L Y+GLR  +        +  +  +I   K+                    
Sbjct: 187 PPARAGFLILYYTGLRIGELLALEYGDIDFDGCTINVNKSYQHINGKDVVTPPKTPKSVR 246

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
            + +P+     +            ++         F            V +   H +R  
Sbjct: 247 IISIPEFLRDEIKSYTERLYGLHKHDRIFPCTKHFFEHEIMRGTKDGEVKRIRLHDIRHS 306

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
            A++  + G +   +    G + V+    TY+      R   + + ++  + 
Sbjct: 307 HASLLIEMGFSPLAVADRLGHEKVETTLNTYSHLFPHKR--DEVAEKLQKLK 356


>gi|167561039|ref|ZP_02353955.1| prophage integrase [Burkholderia oklahomensis EO147]
          Length = 376

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 103/324 (31%), Gaps = 24/324 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R ++G   ++     G RIR      S    A   A   ++          +   T   
Sbjct: 5   KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127
            +  + K          ++         +  +    + R I  + I++ +E++       
Sbjct: 63  AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+    
Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
               +  R    F L +GLR S+  +     +              K G +I+V L +  
Sbjct: 175 EELPTHLRQMTRFALATGLRESNVRQLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       + +        +    ++  ++    +AG+     H +R   A+    A
Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW +      Y  
Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317


>gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-2-3B'a(2-13)]
          Length = 330

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 37/323 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            +G   +    + P     +L  L +++ +      LA  SR ++    +Q  +      
Sbjct: 5   RSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VP 62

Query: 111 YRKITTKHIRSGVESRKH---------------TPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             ++   H++S + S K                +P++      +++  F+WA ++ Y+  
Sbjct: 63  LPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQD 122

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                  RP R    +       + Q   +   +   +       +L  GLR  +     
Sbjct: 123 PLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLDLT 182

Query: 214 VQHLQNNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------- 258
           VQ  Q +       ++  K      V + D   +LL      +                 
Sbjct: 183 VQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRC 242

Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                + +                  +++ H  R   AT+  D G     +    G  T 
Sbjct: 243 LAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTA 302

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
                YT+ A+ +R  I  SR I
Sbjct: 303 AMTMRYTQRAN-LRAAIARSREI 324


>gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 411

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 97/291 (33%), Gaps = 23/291 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR 112
           E    P+    T +    +  +       A+ +   +ES    +           D   +
Sbjct: 105 EEKEEPKTLIATFQEHNDQ-CRQLVGKDFALVTVRRYESCKRYLAELIKIKYDKEDLPLK 163

Query: 113 KITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            I  + IR+     K     + ++ I+++  ++ +   ++  E++  +P   ++    K 
Sbjct: 164 DINGEFIRAFDFYLKTEKECSQNTVIRYMKCLKKITNLSLANEWINKDPFTGIKF-HEKE 222

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                 T +++Q   +   +  +    R  F F  Y+GL   D  +   +H+  +     
Sbjct: 223 VNREFLTWDELQIITNKKFDLPRIDLVRDIFIFGCYTGLSFIDIKQLTAEHIVKDREGNF 282

Query: 226 TQKTGTIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             +     T  + +  +      ++       +    N         + + + K  +   
Sbjct: 283 WIRKARQKTKNMCNIPLLDIPLAIIEKYKDNPKCQKQNVLLPVPCNQKMNSYLKEISDLC 342

Query: 281 GVNK--SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADR 328
           G++K  S H  R   AT      G +   +    G   ++  + Y +  D+
Sbjct: 343 GIHKEISTHTARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARVLDQ 393


>gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 396

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 93/387 (24%), Gaps = 63/387 (16%)

Query: 11  VTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTG-------STPKREYIN 62
           +     + G+  Y       GR   LP            + +         +    E   
Sbjct: 4   IQTRTNKAGRTTYRVGFYEAGRFQWLPALAREAGAQRVKAIVEDPRQGPTVARRILEAQV 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
                  TL      Y +          +   +E+      + + G+     I  + +  
Sbjct: 64  DSAPGMPTLAEFFPRYIEHRGLR-CTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTVAE 122

Query: 122 GVESR----------------------------KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            +  +                              +P +       +  +   AV++  +
Sbjct: 123 WIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGLAVQEGIL 182

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP    + P    E  R                 S   L     L +G R  ++    
Sbjct: 183 PANPARGADLPDDDVEEERGIFSRAEWARFYAAISESYQPLLIVL-LVTGARWGEATALQ 241

Query: 214 VQHLQNNIFSIKTQKTGT----------------IITVELPDGFMKLLAM----TPIGKE 253
           V+ L      I  ++                     T+ LPD  ++ L          + 
Sbjct: 242 VRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADEF 301

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
                              +K     AG+  + + H +R   A+ +   G  A  +    
Sbjct: 302 LLTAPGGGVIHRTNFVERHWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQHRL 361

Query: 312 GWKTVDQAET-YTK-GADRIRLGIKNS 336
           G +++      Y     D  R  +   
Sbjct: 362 GHESLQTTSRVYAHLLLDAQRAAVDAI 388


>gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 333

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR       +   +Y   L  S    E+ +    +   L
Sbjct: 4   RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLISCDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPCRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|283798849|ref|ZP_06348002.1| phage integrase [Clostridium sp. M62/1]
 gi|291073387|gb|EFE10751.1| phage integrase [Clostridium sp. M62/1]
          Length = 363

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 104/362 (28%), Gaps = 43/362 (11%)

Query: 18  HGKIIY---YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G       Y      R+ +             +             + +      + + 
Sbjct: 9   NGTWYVMSRYVNWKGERKQKCKRGFATKREAQEWERIFQ--------LQNSSDMDMSFEA 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------ 126
               Y +      L  N+ ++ E     +I+   G     +I+TK + +           
Sbjct: 61  FTELYIRDMKSR-LKENTWMTKEHIIRTKILPYFGKLKISEISTKEVIAWQNEMLAYRDD 119

Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQF 182
           K  P S          +  +F  AVR   +  NP         +       WT+E+ ++F
Sbjct: 120 KRKPYSQTYLKTLHNQLSAIFNHAVRYYELRSNPAAKAGNMGSEEHKEMLFWTREEYKKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AFE L + G+R  +              +++  K+             
Sbjct: 180 SFEIMDKPISFYAFEMLYWCGIREGELLALTAADFDFEKETVRINKSYQRLHGEDVITTP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+++P    + +             +    +  +         A  AGV +  
Sbjct: 240 KTKKSNRTIKMPKFLCEEMQEYLQMLYGLKKKDRIFTITKSYLHHEMDRGAKAAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H +R    ++  D G +A  +    G +++D    Y       +   + + R+  V   
Sbjct: 300 IHDLRHSHISLLIDMGFSAVAIADRVGHESIDITYQYAHLFPSKQ--TEMADRLDDVGKG 357

Query: 346 DD 347
           + 
Sbjct: 358 EF 359


>gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
 gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B]
          Length = 292

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 77/258 (29%), Gaps = 20/258 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129
           I+ Y++       + N+  ++ +     ++             K+T       +     +
Sbjct: 5   INNYKEYLFDSGKSENTIYAYVTDVTLYLKFLDKKGIDVYKSDKLTVMAYIQYLLESGKS 64

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185
             S  + + S+R  + +   Q  +   P +  +  K   +  +  T     + ++  +  
Sbjct: 65  ERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILTVDEVDKIIRTVEKD 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244
             +G +     E +  +G++ S+     V  +   +  ++          + +     + 
Sbjct: 125 CPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLIPIGRSACRA 184

Query: 245 LAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +                  K+         K  + +A ++K  + +  R   A
Sbjct: 185 LNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRAHIDKDVNLNTFRHSFA 244

Query: 295 TISADAGATAHELMATYG 312
                 GA    +    G
Sbjct: 245 VHLLQNGANVRAVQKLLG 262


>gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 295

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 14/274 (5%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             PRK+  + K  ++++ ++      +  +   ++   +Q++ K      R+ITT+ +R 
Sbjct: 8   REPRKRKISNKEYLAKFLEAKKMEGCSDRTIKYYKVTVEQLLAKV-IRPIRRITTEEMRE 66

Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +       ++      ++   F W   ++Y+  +P   + + + +       T E
Sbjct: 67  YLVEYQKINNCGKTTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 126

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVE 236
           D+++         +     + L  +G+R  +  R     +  +               V 
Sbjct: 127 DIEK-LRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVY 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGV 289
                   L      +E                       I  +    K  +++   H  
Sbjct: 186 FDAKSKVHLINYLRSREDDNPALFVSLDKPNDRLKISGVEIRLRQLGRKLHLDRIHPHKF 245

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R+  AT + D G    ++    G   +D    Y 
Sbjct: 246 RRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA 279


>gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus]
 gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus]
          Length = 314

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 32/286 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T    I+ Y  +      +  +  +++    Q          R+   + + +  +  K +
Sbjct: 24  TFDRFIN-YLDA------SPKTVETYKKALRQFFNYLAINGIRQPQREDVLAFRDDLKAS 76

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
              P++   ++T+ R+ FKW  ++                K       T    ++     
Sbjct: 77  GLKPTTVQNYITATRIFFKWTEQEGLYPNIAEHVKGAKLDKNHKKDYLTSRQAKEVLASI 136

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   EG +       ++  GLR  +  RA V  L+    +      G     +     +
Sbjct: 137 ETDTEEGLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFLQGKGREEKTEYIKI 196

Query: 243 KL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284
                            +        +   N+  ++++    S   K     AG +    
Sbjct: 197 SAPVEKAIRNYLKARGNVEEGQPLFTSTSNNSRGKRISTRTVSAIVKNALKNAGYDSARL 256

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +AH +R  + T++  AG    E+        ++    Y    D+ +
Sbjct: 257 TAHSLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAK 302


>gi|296110177|ref|YP_003620558.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295831708|gb|ADG39589.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 360

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/340 (10%), Positives = 89/340 (26%), Gaps = 27/340 (7%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +   R R     Y   ++   G+  +L          A  +A          + S +   
Sbjct: 1   MVSYRKRGSVWQYEISYKDTSGKYKKLRKSGFPRKSDAISAA-AQLQTNHPNLISFQSGK 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
                    +       +++  + I +++      +         ++    +  +     
Sbjct: 60  QLFSDYFEHWINLYKKPTVSKITFIKYQNTLQHAKQLFKGIRLSDLSRTVYQQKINKFSE 119

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF 185
            H+  +   F   ++     A  ++ ++I+P            +       ++ +     
Sbjct: 120 THSIRTVHTFHKQLKSALLDAFDEKIISIDPTRKTVINGTPPRKQRMTLDYKETKLLVKH 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
                   L     + +G+R ++        +      I   KT                
Sbjct: 180 LDLNMLEDLVIYVAIVTGMRFAEILGLTPADIDTQNNIISITKTWDYKFNSGFKPTKTKS 239

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----AGV-NKS 285
           +   + +    +K +       +    N      + +  S       +      G+    
Sbjct: 240 SQRDIVVDSETIKAIQKFVSHHKIPETNPIFVYNSHSIVSAEINKILSSKLNGLGIARIP 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            HG+R   A+I   +G     +    G   V    +TY  
Sbjct: 300 FHGLRHTHASILLYSGVNLLSVSKRLGHSNVTTTQQTYLH 339


>gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 292

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 83/266 (31%), Gaps = 24/266 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
           I E+     +  + +  +  ++                   +  I +  IR  +ES    
Sbjct: 2   IKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQLSWESIDSNIIRDWMESMMDR 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQ 181
               +S  + L+++R  +++A+ +  V  +P +++  PK+K    +   + +M      +
Sbjct: 62  GNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESEMDALLAFK 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDG 240
            +    +        E    +G+R ++        +     S     K      +     
Sbjct: 122 LEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGKRNKERYIPFGAE 181

Query: 241 FMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAG--VNKSAHGVR 290
             + L      ++                Q++   Q         +       ++ H +R
Sbjct: 182 LKESLQYYISIRDQQVQRQSTAFFVDKDGQRLTHNQVRYAVNKCLSTVTTLKKRTPHVLR 241

Query: 291 KFSATISADAGATAHELMATYGWKTV 316
              AT   + GA    +    G +++
Sbjct: 242 HTFATAMMNHGAGLESVQQLLGHQSL 267


>gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              ++ + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|330963829|gb|EGH64089.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 355

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 112/350 (32%), Gaps = 28/350 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  TL+  
Sbjct: 6   KTAAGTWKALVRKTGWP-TNTKTFRTKRDAEDWARRTEDEMVRGVYIQRSGSERMTLEMA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            ++ +  +   Q+I   G +    ++ + I    ++R        
Sbjct: 65  LKRYLSEISPTK-KPTTQRAEATKAQQLISHLGKYSMAALSAEIIAGYRDTRLASITNRG 123

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + ++    L  +  LF  A+++  +  + NP L++ +P       R  + E+ ++  
Sbjct: 124 KPTSNNTVRLELALLSHLFTVAIQEWGLGLSFNPVLNIRKPSTGEGRDRRLSAEEERRLL 183

Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235
           +  +  S P L +     L +G+R S+        +      ++   T         ++ 
Sbjct: 184 TAVNNHSNPMLGWIVRIALETGMRSSEITSLRRHQVDMKKRVVRLSDTKNDSARTVPLSK 243

Query: 236 ELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              + F   L       +   +         K +   F+  +    TK G+     H +R
Sbjct: 244 WATETFQAALNNPIRPIDCDLVFFGEPGKNGKRSPYAFTKTWGLLKTKLGMPDLRFHDLR 303

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             + +   + G +  E+ A  G K++   + YT    R    +    ++ 
Sbjct: 304 HEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVSKLDKLD 351


>gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 292

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 86/295 (29%), Gaps = 33/295 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR- 126
                + +       +  +   + +   Q  R              +T   +R       
Sbjct: 5   QAFEAWLRE---QDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQ 61

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K + ++  + L ++R   +W +    +  NP   ++ P+ +        + +  +  
Sbjct: 62  TVQKASAATIRRRLMALRAYCRWGMAAGKIERNPTARLKMPREEKLSPGWLERSEQWRLV 121

Query: 184 SFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226
                G              +      FLL++GLR S++C   V  +Q         +++
Sbjct: 122 REAERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQVRS 181

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
            K      V L     + L      +        +     +           +AGV    
Sbjct: 182 GKGAKARKVPLNAEARRALKAWLEERGGQPGRMFEM--TVSGVQRRLAEMGRRAGVEVHP 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           H +R   A    DAG    E+ A  G  +++    Y       R   +   R+  
Sbjct: 240 HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVY--VTPGERDLERALSRLEG 292


>gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------------TQKTG 230
           RL  + L  +G+R S+  +  V+ L  +  +I                        ++  
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLP 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|262046670|ref|ZP_06019631.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260573119|gb|EEX29678.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 361

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/346 (10%), Positives = 93/346 (26%), Gaps = 35/346 (10%)

Query: 16  TRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R         +Y  +G  R          +    +           +  N    +  T 
Sbjct: 6   KRGATWRAQVSWYDDQGKRRFKTKQGFLTKSAARKW----ANEMEVAKDDNKISDQNPTF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                EY  +      A  ++  +      +    G+    K+  +  +S +      H 
Sbjct: 62  AQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNDYGKNHA 121

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWS 187
            ++       ++      +  + +  N    V        +  ++    +++Q+      
Sbjct: 122 KTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLESLE 181

Query: 188 EGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
              +P    R      +Y+G+R  +        +      IK  K+ +            
Sbjct: 182 SNIKPTYISRYMIITAIYTGMRIGEIMALKWTDIDFKKHLIKVTKSYSYLDGKIKEPKTE 241

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV---NKS 285
                + + +  + LL       + F       K+   T  +   K +  K  +   +  
Sbjct: 242 SSKRVIRVSENLLDLLKQLKANHQKFVFMTQSGKIITTTAANQTLKKQLKKLNISKNHFH 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            H +R     +    G   + +    G  ++      Y    D +R
Sbjct: 302 FHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELR 347


>gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 378

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 101/315 (32%), Gaps = 41/315 (13%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +      T++ +  +++K      L  ++    +  F+  +++ G+ D ++I    I+S 
Sbjct: 61  AEEIPNLTIQEVFDDWQKIRK-EELKPSTFHVGKMAFNTFLKRFGEMDIKEINPDQIQSF 119

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + + + +PS+      S  +LF +A    Y+  NP   V  PK K        K++    
Sbjct: 120 LFNSQLSPSTRSLRKNSFNLLFTYAKNVGYIEANPVERVVLPKEKNTIEELKKKQNKFLN 179

Query: 183 KSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
                             +  L +EFL  +GLR  +      + +               
Sbjct: 180 LEEMRIILEKNKPIEKDIRKLLIYEFLFLTGLRIGEVQALRWEDVDFEKKTLAVTHTLNH 239

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFS 270
                 N   +  +   +  T+ + D  +++L                +       +  +
Sbjct: 240 QGTSEKNRQLLSPKTINSYRTISINDRCLEILNYFYSHLTDELFIFVNKHGDTYCYSILA 299

Query: 271 IWFKAKATKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
             FK      G        + H +R    ++  + G     +M   G        + Y+ 
Sbjct: 300 RHFKKVCQVLGEETSQRKYTLHMLRHSHISLLIEIGIPIKTIMERVGHSNEQMILQIYSH 359

Query: 325 GADRIRLGIKNSRRI 339
                ++    + ++
Sbjct: 360 VT--KKMEEDLANKL 372


>gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
 gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp.
           6_1_27]
          Length = 329

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 81/276 (29%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +  T + L+  +  +      +  S   + +  D +  K  + + R+  T  +
Sbjct: 40  ETEEEVNEALTNEQLLERFLAAKRIEGCSEKSLAYYRTTIDAMTAKV-EKNVRETETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R       + +  +  +       +   F W   ++Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDEDYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMRDSC-EEPRDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L      +               +++ +       +    K  + K   H
Sbjct: 218 VYFDARTKIHLQNYLQERTDDNPALFVSLRAPHERLQSGGVERRLRELGKKLDIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 310

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 96/306 (31%), Gaps = 37/306 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T+  + + +++      +  ++  ++    +  I+   GD     +T K ++  V  
Sbjct: 3   TEKTIAEMANLWKEEKR-QFVKKSTYAAYSLIVETHILPAFGD--LTTVTEKDVQEFVLQ 59

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  +     +    L  +R++ K+  +++Y A  P   +    R+ + +   +  + ++ 
Sbjct: 60  KLQSGLSQKTIKDMLIVLRMILKFGAKKQYCAYVPFDVIFPTDREKQELDVLSVVNQRKI 119

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            S+  +    R L     L +G+R  + C      +  +   I  +KT   I V      
Sbjct: 120 VSYVRDNFTFRNLGILICLSTGIRIGEVCALTWDDIDIDNGVIHIRKTIQRIYVNEGGVR 179

Query: 242 MKLLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKA 275
              L +      T   +                                    +  ++K 
Sbjct: 180 KTELLIDTPKTATSMRDIPMIKELYEVLKPLKKVVRSDYYVLTNDAEPTEPRTYRNYYKR 239

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLG 332
              K G+     HG+R   AT   ++      +    G   +      Y     ++ +  
Sbjct: 240 LLDKLGIPPIKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRC 299

Query: 333 IKNSRR 338
           I    R
Sbjct: 300 IDKMFR 305


>gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi]
          Length = 326

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 21/306 (6%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L+  + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLDIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
             +    ++    +Y  + I   GD    +++ + +      R     + ++  + +  +
Sbjct: 73  GQNHEHGTKEF--NYLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRL 130

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             +F   ++ +  +    +    P  +      + ++   +       G    L     L
Sbjct: 131 SGMFTKLIQLDEFSGQHPIHGLPPLAEANPEMTFLEKAEIEKLLNVLAG-DDLLVALLCL 189

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R ++        + N   +    K G   TV         ++     K     +  
Sbjct: 190 STGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASAK 241

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             K++  +F    +        N++ H +R   A+     G     L    G  ++ Q  
Sbjct: 242 LFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTM 301

Query: 321 TYTKGA 326
            Y   A
Sbjct: 302 AYAHLA 307


>gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp.
           JA-3-3Ab]
 gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. JA-3-3Ab]
          Length = 309

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 96/304 (31%), Gaps = 37/304 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           +L  L+ ++ +      LA  SR ++    +Q  +        ++   H++S + S K  
Sbjct: 3   SLSQLVGQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VPLPQVQPSHVQSFLNSLKGR 60

Query: 129 --------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         +P++      +++  F+WA ++ Y          RP R    +   
Sbjct: 61  PFRNRSGQWVHPPASPATYNLKRLALQQFFEWASQRGYFPDPLPTQAIRPARLPARLPRD 120

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF----SIKTQK 228
               + Q     ++    R A    L    GLR  +     VQ  Q +       ++  K
Sbjct: 121 LDRLLLQRVLQRAQSHSLRYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGK 180

Query: 229 TGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKA 275
                 V + D   +LL                    ++       + +           
Sbjct: 181 GSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRCPAYRGRPLTYDGLRHIVLK 240

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +++ H  R   AT+  D G     +    G  T      YT+ A+ +R  I +
Sbjct: 241 LTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRAN-LRAAIAH 299

Query: 336 SRRI 339
           SR I
Sbjct: 300 SRAI 303


>gi|255973229|ref|ZP_05423815.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255964247|gb|EET96723.1| conserved hypothetical protein [Enterococcus faecalis T1]
          Length = 376

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 41/355 (11%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G +    ++   GR         ST   A ++A        +  +    +     
Sbjct: 5   KKLKSGWQFRVSYKDKDGRYKTKSGNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
                + +    G L+ ++        D   +   D   +++T +  +  +     T ++
Sbjct: 64  EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123

Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           A   +  T MR   K A+ +  +  +P   V+   +K          + Q+      E  
Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                    R    F + +G R S+        +     ++K  KT              
Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275
             +   + + D  + LL    + ++ +++             N++ + ++ T  +   + 
Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              K G    + HG+R   A+I    G     +    G K +    +TY    D 
Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 366

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 88/356 (24%), Gaps = 48/356 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK--------- 67
           R G+ + Y+   +G R    +        AY  AL     K+      R +         
Sbjct: 6   RDGRWMVYYTDVNGARRDKSFGRG---DNAYAEALAFDQEKKSASKQSRGEVSSSVSIES 62

Query: 68  ----------------PTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFD 110
                               K L  +Y +          N++   +   +Q     GD  
Sbjct: 63  EQPVKSEEVLVNTSPFEIIFKDLADKYIEHLEVSGRTETNTKKLKKMIENQFNPLIGDKV 122

Query: 111 YRKITT-------KHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             ++T          I      +   P    +  ++   +  +F + V      +NP   
Sbjct: 123 VNEMTYVDDMVPFIKIFQNTPGKSGKPRSQLTVNRYGDYVNAIFNFGVAMGLTKVNPMRG 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             +     E  R          +      S  R A E     G R  +S    ++    +
Sbjct: 183 RRK---SKEKPREIQLTVEDIKRIMECAESHIRWAMEVCFNLGTRPGESELLALKWEHID 239

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---FKAKA 277
                 +   +             L      +     +         +  +    F+   
Sbjct: 240 FEKSVARIYASKTKTYRIVPISAKLLEKMRSRMAESTSGYVVDYRGERIGMIRKGFRGAC 299

Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
            +A +      + +R   AT     GA    +    G   +      Y    +  +
Sbjct: 300 QRAKINYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHYYHCLESEK 355


>gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 325

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 119/334 (35%), Gaps = 36/334 (10%)

Query: 1   MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  +   LPP +     +HG    Y+    G+  RL        + AY   + G +  
Sbjct: 1   MRPRKKDRHLPPCMYL---KHG---AYYLVRKGKWERLGSDF-QEALLAYAKIVGGKSNG 53

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +            LI E   +     L+ N+   +E+   ++     +F+ R++  +
Sbjct: 54  GMSL------------LIDEALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPR 100

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+ +       TP+ A + ++ +R++F +A+ ++ V  NPC  + R   K         E
Sbjct: 101 HVAALKLHMADTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAE 160

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                 +     S   + +E    +G R SD     +  + +   + + QKTG  + V +
Sbjct: 161 FAAICAASSEYMS---VIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQQKTGAKLIVAM 217

Query: 238 PDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                 LL               F   +  + ++     + F+A    AGV   + H +R
Sbjct: 218 SPDLKALLDRVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLR 277

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S T +   G          G       + Y +
Sbjct: 278 AKSLTDTDRQGNN---AQMLGGHTDAKMTKRYLR 308


>gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 408

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  Y+  NP   VE P      
Sbjct: 122 FINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K       +     +                                   +L M
Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              ++    G K V   E Y   +  ++   +   ++ 
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397


>gi|307828928|gb|ADN95150.1| integrase [Staphylococcus aureus]
          Length = 381

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 104/361 (28%), Gaps = 52/361 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  +R                + L     +  ++N+     TT K +   + +     +
Sbjct: 29  TGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDI---TTFKEVYELWLEQYQ-NT 84

Query: 87  LAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +  ++   ++          +    D   +KIT ++ +  +       S           
Sbjct: 85  VREST---YQRVLTLFDTAILEHFQDVPIKKITVQYCQKVINKWNKKYSDIKAIRIYTSN 141

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +       F  
Sbjct: 142 VFKYAVSLKIILDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYYAIFRT 201

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------- 232
           L ++G R  +        +     +I   KT                             
Sbjct: 202 LAFTGFRRGELMALTWNDIDFTRQTISINKTCARGANYKLVIQEPKTKSSHRTISIDDKT 261

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
              +        ++ L       +         + N   +               S    
Sbjct: 262 ASVLKSWRTHQRVESLKYGHSTSDKHQHVFTTVRDNKQLYPEHCNKALDLICEKNSFKRI 321

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
             HG R    ++  +AG +  E+    G   +      Y    ++ R   + + + +  +
Sbjct: 322 KVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADKFAKYI 379

Query: 344 D 344
           +
Sbjct: 380 N 380


>gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122]
 gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122]
          Length = 390

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 106/389 (27%), Gaps = 60/389 (15%)

Query: 14  ERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
              R     Y        + G  + I        +    +   +       EYI      
Sbjct: 4   YEKRGSTWRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGEYIAPSTS- 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T + +  E+  S +   + V+S  + E      I +  +   + I     +  V    
Sbjct: 63  --TFQQVADEWL-SQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDIS 119

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
            +++ +     +TS  ++FK+A   + + I P   ++RPK+KT        E  ++F   
Sbjct: 120 AQYSKNYVDSIITSTNMIFKYAYDMKLIRIMPSEDIKRPKKKTSVEELEDTEIHKKFLEK 179

Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------- 222
                                 F  L Y+G+R  +        +                
Sbjct: 180 DELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNP 239

Query: 223 --------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                        ++     D          +     F + +  
Sbjct: 240 NNNKKQFQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGY 299

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +   +  +W KA   K  +     S H  R     +  +AG    E+      K ++  
Sbjct: 300 PLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTT 359

Query: 320 E-TYTKGADR-IRLGIKNSRRISSVVDSD 346
              Y K  +   +   +   ++   V  D
Sbjct: 360 MNIYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
 gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus
           thuringiensis IBL 4222]
          Length = 392

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 56/367 (15%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++ ++             + +        YIN P       K  + E+       S
Sbjct: 27  TGKRKQKKVRGFKTKKEAQLAAARIEQEVANGTYINEP---DILFKDFVQEWLNIYS-KS 82

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             ++S    +   ++++    +   + IT K  ++ +        +        T+ R++
Sbjct: 83  TKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHDKGYAFNTLDGIHTAGRMI 142

Query: 144 FKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGS--QP 192
           FK A+  + +  NP  +V+ P+            + I+   KE++  F     E      
Sbjct: 143 FKKAIELQIIKSNPTDNVKLPRKVETVEDIENDKKAIKYLEKEELAHFLQVAKEKGLDND 202

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-------------------NIFSIKTQKTGTII 233
            + F  L YSGLR  +        +                     +   +  +  G+I 
Sbjct: 203 YVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKTLYNPDNNSQHYHLLTPKTKGSIR 262

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKATK 279
           T+++  G MKLL      +    +                              K     
Sbjct: 263 TIKMDQGIMKLLKSHKAKQNELKLYTRPQYVDQGFVITKASGYPEVMKMIQNRLKRLIKL 322

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336
           + + K  + H  R    ++  +AG    E+    G   ++     Y        +  K S
Sbjct: 323 SNITKNITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTMNIYAHMT--KNMEEKAS 380

Query: 337 RRISSVV 343
           ++ S ++
Sbjct: 381 QKFSELM 387


>gi|328947971|ref|YP_004365308.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448295|gb|AEB14011.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 332

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 83/281 (29%), Gaps = 15/281 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+  +  + H    +  S   ++S   + I       + +I T+ +R  +   +     +
Sbjct: 55  LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        ++ E +        + 
Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL-LRDNCKT 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
           ++     + L  +G+R S+      Q +                  V         L   
Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232

Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++               ++  +   I  +       +     H  R+  AT + D G
Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               ++    G + +D    Y    D+  + + +   +  V
Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKNTLVKV 332


>gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 398

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 100/357 (28%), Gaps = 51/357 (14%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-----PKREYINSPRKKPTTLKWL 74
           ++   +     + ++         +    +    +       +   I   +      +  
Sbjct: 14  RVSCGYDIRGKQIVKYRTFRPPEGMSEKQAQKEANRQAVLFEEECKIGHCQTGSIKFEAF 73

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
             ++ K      L   +         ++    G     KI+ + I+  +           
Sbjct: 74  AEQWFKEYAKLELRPTTYERMRKLTARVYPAIGHLKLDKISRRDIKLFINDLALNGRNFK 133

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  + I  ++ +  +F +A+  + +  NPC  ++ P    E  R     +     
Sbjct: 134 TGEPLSRKTIIHHVSFISDVFSYAIDMDMLTYNPCEKMKIPHIGEEKEREIYSPEEFDQL 193

Query: 184 SF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSI 224
                    + R+ F   +++G R  +      + +                     ++ 
Sbjct: 194 FELLQQAPLKYRVFFTLAVFTGFRRGELLGLEWKDILWEENVISVRRTSAYTGAEGQYTG 253

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFS 270
           KT+   +      PD   +LL    + ++                F   D + MN     
Sbjct: 254 KTKTKRSQRCNRYPDELFELLKEYKVWQDEERERQGEKWVDTDRLFTKWDGRPMNPQTPY 313

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
            W+K    K      + H +R   A+I   AG     + A  G    +     YT  
Sbjct: 314 GWYKEFCQKHDFRFCNIHSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTHE 370


>gi|273810420|ref|YP_003344891.1| integrase [Xylella phage Xfas53]
 gi|257097795|gb|ACV41101.1| integrase [Xylella phage Xfas53]
          Length = 339

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 99/329 (30%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++         +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                 A + ++    L+ W   +     +        +R     R    ED      + 
Sbjct: 124 TSK-VIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRNVYIEDTTYHAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  +       + T     F      AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDAEGLELSRTGLRYRFDKARAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 362

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 103/345 (29%), Gaps = 14/345 (4%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM----SALTGSTPKREYINSPRKKPT 69
           +R  +      +R   GR+    +                       +         +  
Sbjct: 5   KRANNDTYYVSYRDAGGRQRTKTFGKGREGKRDAQKFDEEIKARKLVEAPLPIFAPGEKV 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK- 127
            +  L   Y  +      ++              I         +I  + I   +     
Sbjct: 65  YIDQLTQLYINAKKAEGKSLRWIKELAVLVKTHFIPAFAQRPVDEIRFEEIVEIIGKVYA 124

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSF 185
             + ++  ++L+ ++++F++ V  E    NP    ++PK +    +  +T     +  + 
Sbjct: 125 DRSQTTRSRYLSYLKMVFQYGVDYELTTKNPLKRWKKPKERPRDTKLTYTDLMKIKELAR 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   +A+   + +G     +         ++   +   KT T   + +   F+  L
Sbjct: 185 PHLAWAIEVAWNLGVRTGESELLALTWNDIDWDDSSIKVYATKTKTTRVIPIAPEFLDRL 244

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
            +     +T +I   + K     F    K  A KAG+      + +R   AT     G  
Sbjct: 245 QLMREKAQTGYIIEYQGKPLRK-FRRSLKTAAEKAGLTYPVVMYDIRHLFATTLLREGGD 303

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
              +    G  +V    + Y       +   +   ++ S+   +D
Sbjct: 304 VAAVSKLMGHASVKMTVDQYYHLLGGEKR--RTIAKLPSLSKPED 346


>gi|255283631|ref|ZP_05348186.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255265893|gb|EET59098.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 361

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 98/339 (28%), Gaps = 41/339 (12%)

Query: 18  HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G       YY   G   R              +         +   +        T   
Sbjct: 9   RGTWYVSFHYYDWTGKNCRKVKRGFKTKREATEW--------ERHFRMKEAADLDMTFDE 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES------- 125
            +  Y +      L  N+ ++ E     +++    D   R I  K I             
Sbjct: 61  FVQAYTRDMKPK-LKQNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQISYRDE 119

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
             + + P+      + +  LF  AVR   +  NP +      +   E +  WTKED  +F
Sbjct: 120 KGKPYAPTYLKTLQSELSALFNHAVRFYELNSNPVVKAGPLGKGKAEEMLFWTKEDYLKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AF+ L + GLR  +      Q +  +   I+  K+             
Sbjct: 180 IEAVKDKPYSYHAFQILYWCGLRVGELLALTPQDIDFDNKVIRITKSYQWLEGKDVITDP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   V +PD   + L             +    +  +         A KAGV +  
Sbjct: 240 KTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDCIFHLTKSFLHHEMTRGAEKAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R    ++    G +A  +    G ++VD    Y  
Sbjct: 300 IHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338


>gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii
           M21/2]
          Length = 416

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 108/414 (26%), Gaps = 101/414 (24%)

Query: 5   LRLPPFVTKERTRHGKII------------YYFRK--GHGRRIRLPYPHESTFIPAYMSA 50
           ++   ++ + +   G+++            Y +R    +G+R  +           Y + 
Sbjct: 1   MKRRVYMQRRKDNKGRVLKDGEVYRKSDGLYMYRWTAKNGKRHTI-----------YDAT 49

Query: 51  LTGSTPKREYINSPRKK-------PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI- 102
           L G   K E I               TL  L   +RK+     L  ++  ++   +++  
Sbjct: 50  LEGLREKEEKIQHDLADGIRIPECSLTLNDLFELWRKNKV--GLKEHTFANYVYMYNRFV 107

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYVAINPC 158
             + G    + I    IRS           A+  L      +  +F  AV  EY+ +NP 
Sbjct: 108 RDEIGMMKLKDIRKSDIRSYYNGIVRNGKMALNTLETIQNVLHQVFAVAVDDEYIRVNPT 167

Query: 159 LS-----VERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSC 210
                      + +T      T    Q F +F  +          F F+L +G R S++ 
Sbjct: 168 DGVLTAIKAAHQYETPKRHALTLPQQQAFLNFIKKTPKFQHWLPMFTFMLGTGCRISETV 227

Query: 211 RAGVQHLQ---------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                 +                              +       + +     K L    
Sbjct: 228 GLCWSDIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKRAIPILPEVRKALEQER 287

Query: 250 IGKETFFINNDK---------------QKMNATQFSIWFKAKATKAG------------- 281
             ++   +  +                Q  N    +   K  +                 
Sbjct: 288 TNQQELELVCEYEIDGISDFVFLNRFGQPQNPQTVNRAIKRISVAHNEAELEKAEKEKRE 347

Query: 282 ----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                  S H +R    T   +       +    G + +      Y +     +
Sbjct: 348 PQLLPPFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKEAK 401


>gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 93/317 (29%), Gaps = 32/317 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L            P   P +L  L+  +       + +  +      +    I  + D  
Sbjct: 11  LLTVDDVYRQPVGPAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRG 70

Query: 111 Y---RKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                 IT   +                  +  +    L  ++V FKW  +Q  +  NP 
Sbjct: 71  LYYAADITRPILERYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPA 130

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +E P+ +    R     D  +           +G++ R   E L  +G+R S++ R  
Sbjct: 131 ADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLD 190

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264
           +  +       +I+  K      + L +  +  L           +     +        
Sbjct: 191 IYSIDGSRKTVTIRQGKGNKDRVLPLGERALNWLQFYQQQIRPQLLVTPDIQSLFVAMDG 250

Query: 265 ----NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                    +         AG+ K    H  R   AT   + GA    + A  G  +V+ 
Sbjct: 251 LDGLQPNGITNAVSGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVES 310

Query: 319 AETYTKGADRIRLGIKN 335
            + YT+ + R    +  
Sbjct: 311 TQVYTQVSIRALQAVHA 327


>gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
          Length = 326

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 93/309 (30%), Gaps = 27/309 (8%)

Query: 26  RKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+RIR  +  ++       Y  A              R    TL  L++ + K  H
Sbjct: 18  RGRDGKRIRRKFERKAEAVAFERYTIAYASQKE----WAGQRADRRTLSELLNIWWK-YH 72

Query: 84  WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
             +    ++      F+ +++     GD    +++ + +      R     + ++  + +
Sbjct: 73  GQNHEHGTKE-----FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDM 127

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +  +F   ++ +  +    +    P            E  +  K          L   
Sbjct: 128 YRLSGMFTKLIQLDEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVAL 186

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
             L +G R ++        + N   +    K G   TV         ++     K     
Sbjct: 187 LCLSTGGRWTEVATLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEA 238

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +    K++  +F    +        N++ H +R   A+     G     L    G  ++ 
Sbjct: 239 SAKLFKVDYEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQ 298

Query: 318 QAETYTKGA 326
           Q   Y   A
Sbjct: 299 QTMAYAHLA 307


>gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 27/231 (11%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L++ R  ++W  +   +  NP  +V  PKR     +  + +D        +
Sbjct: 1   MSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPT 60

Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GT 231
            G+    +     E    SGLR ++     ++++++  +                     
Sbjct: 61  AGTAESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDK 120

Query: 232 IITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              V +    +  L                  F++    +M+        K  A  AG+ 
Sbjct: 121 ERKVPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIP 180

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   AT    +      +    G  ++   + YT   D   L 
Sbjct: 181 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT-SLDFQHLA 230


>gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
 gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503]
          Length = 382

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 107/362 (29%), Gaps = 34/362 (9%)

Query: 11  VTKERTRHGKIIYYF-----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +  +    GK  Y F                 RI L   +           +        
Sbjct: 28  IYLDIYYKGKRYYEFLKLYLTPERFPEDRDKNRITLRLANSIKA----QRIIDLQNEIYG 83

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     TL   +SE             S     S  + +         + I T  +
Sbjct: 84  VRMINGLGKKTLLEFLSELSTDKSAHGDKAYSLR-LRSLANHLRDYMPQCLLKDIDTGFV 142

Query: 120 RSGVESRKHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGI 171
           +  +   +  P      +   +   + V    AV++  +  NPC    + E+P + T   
Sbjct: 143 KGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCGSLDTDEKPHKPTSLR 202

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T E++++         + + AF F  + GLR SD      + +Q         +   
Sbjct: 203 TYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQIIQ 262

Query: 232 I-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
                 I + L +  +K L       +   +       + T      K     AG+    
Sbjct: 263 RKTKEAIYLPLSEEAIKYLPARENENDNDRLGLIFHLPSLTIICQVLKGWTLAAGIKNKK 322

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            + H  R   AT+S   G   + +    G K +   + Y K  D  +   +   R + V+
Sbjct: 323 VTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR--QAIDRFNGVL 380

Query: 344 DS 345
           D+
Sbjct: 381 DA 382


>gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 303

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 82/275 (29%), Gaps = 23/275 (8%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +   L  ++ K    G L   +  ++     +I     D +   +++  +       
Sbjct: 7   QDPSFNKLYQKHLKCLKLGGLQPKTIDAYARALRRIGHYF-DGNVCDLSSDQLLDYFTEL 65

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              H+ S+    L  ++  +   +R+ +  I      +        I      +      
Sbjct: 66  LDTHSWSAVKLDLYGLKFFYSEVLRKPWENILLIKPPK-----ASRIPDILSVEQAGRLF 120

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
             +     ++ F      GLR  +  R  V  +   N    I+  K      V LPD  +
Sbjct: 121 AATSTLSYKVFFFTCYSMGLRLGEGIRLTVDDIDTGNMRVHIRDAKGNKDRLVPLPDKTL 180

Query: 243 KLLAMTPIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
           ++L                        +     ++        ++     G+ + S + +
Sbjct: 181 QVLREFWAVHRHPCFLFPSRKRGLKNAHLVDLPLDRGGIQSAMQSVVRHLGLRRISCYSL 240

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R   AT   +AG    EL    G  ++     YT 
Sbjct: 241 RHSYATHMLEAGVDLLELQQILGHVSILTTARYTH 275


>gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14]
 gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14]
          Length = 359

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/323 (9%), Positives = 79/323 (24%), Gaps = 68/323 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR-------- 126
           E+ K       + N+  ++  +     +     D  +  I  + + + +           
Sbjct: 30  EFTKFLEATDKSPNTIKAYSHHLKLYWQFLTQDDISWTDICIEDLANFIRWLQSGDQDGV 89

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVERPKR------- 166
                   K T  +    + ++   + +  R        +  +   S +           
Sbjct: 90  ISIVKRDAKRTNKTINLIMAAVSAFYDYHSRSGKVADLKIYRDGAFSGKYKSFLHHITSG 149

Query: 167 ------------KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                          G++  TK  +QQ     +   + +     +  +G+R         
Sbjct: 150 KSIQSRVLKLKEPKRGLKTLTKPQVQQVIEACN-NLRDKFIICLMYETGMRIGQVLGLRH 208

Query: 215 QHL--------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----------- 255
           + +             + +           L D    ++++                   
Sbjct: 209 EDIKSGDNQIAIRFRSNNENNARSKSREDNLVDVSSSIVSLYTDYFIHEYGEVESDYVFV 268

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
             +       M        FK  + K G++ + H  R   AT    AG     +    G 
Sbjct: 269 NLWDGEIGAPMKYGSVITLFKRISKKTGIDVTPHIFRHTHATELLRAGWDLAYIQKRLGH 328

Query: 314 KTVDQAE-TYTKGAD---RIRLG 332
             +      Y   +    +  L 
Sbjct: 329 SDIQTTANIYAHLSSDDMKKELA 351


>gi|326692848|ref|ZP_08229853.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 91/324 (28%), Gaps = 24/324 (7%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
              RIR      +T   A  +        ++       K         ++        L 
Sbjct: 20  GKTRIRKTMSGFTTKRDA--TIWANDIEFKKQNEDLVVKDHLFTEAFEDWYHVFKEPQLE 77

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKW 146
             ++  ++     +  K       ++T+K  +  +         SS            ++
Sbjct: 78  TATKQWYKRTLSLLKEKWDGKKLSELTSKDFQKLINDYGSDHVLSSVSHIKNITSAFIRY 137

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---- 202
           AV ++++  +   +V+         +     + ++ ++          A   ++ +    
Sbjct: 138 AVDEDFIKKDFTRNVKTYSVVKSKDKQLKFLEAEEMENLILSIKDNEAATSRMILTAIYS 197

Query: 203 GLRCS--------------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           G+R S              +          ++     T+   +   + +P  FM +    
Sbjct: 198 GMRFSEVAGLTLEDFDFEKNVINVNKSWQIHDQKFKNTKTQTSNRIIVMPKVFMDIAKKW 257

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
             G E  F +++         +   +    K      + HG+R   A+           +
Sbjct: 258 TFGNEFAFESDNGTPPTDNAANKQLRRYLEKINSKIITFHGLRHTHASYLLANDLAIQFV 317

Query: 308 MATYGWKTVD-QAETYTKGADRIR 330
               G   V+    TY    ++ R
Sbjct: 318 SERLGHADVNITLSTYAHLLNKKR 341


>gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 408

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  Y+  NP   VE P      
Sbjct: 122 FINSLFTNKELGKSKNGLSYNTVKIVNAALSNAFKKAQKLGYIKSNPTYFVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K       +     +                                   +L M
Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              ++    G K V   E Y   +  ++   +   ++ 
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397


>gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 357

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 16/264 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESRKHTP 130
               ++     + + N+  ++   F Q++    D     +       +I   + + K + 
Sbjct: 85  FQRMKEVLQMKAYSPNTIKTYMVEFAQLLYVVKDVPVDSLGYDRLRAYILYCINTLKISE 144

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S     L +++  F     Q     +    + RPKR++   +  +++++++         
Sbjct: 145 SQLHSRLNAIKFYF----EQVLHKPDFFAEIPRPKRRSTLPKVLSQKEVKR-IFNTVRNR 199

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT 248
           +  L  +     GLR S+     V  + +    +  +  K      V LP   + LL   
Sbjct: 200 KHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRYVPLPTAVLDLLREY 259

Query: 249 PIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                            + +       FK     A V      HG+R   AT   + G  
Sbjct: 260 YKAYRPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNRPIGIHGLRHSYATHLLEYGTD 319

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +     Y K  +
Sbjct: 320 ISFIQQLLGHNDIKTTMLYAKVGN 343


>gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
 gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271]
          Length = 335

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 48/289 (16%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVESRKHT---PSS 132
              + ++R ++ +   Q                 D   I+   +R  +         P S
Sbjct: 31  RHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMGELLEKGLQPKS 90

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------- 185
             + L +++  + + +    V ++    V  P+         ++ + ++           
Sbjct: 91  IARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEKLFDELLSLPAP 150

Query: 186 ------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232
                           ++ R   E L   GLR S+      +++      ++    G   
Sbjct: 151 GEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDSLLRVSGKGGKQ 210

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK--------------QKMNATQFSIWFKAKAT 278
             V L       L      +  FF   ++              +++         +   +
Sbjct: 211 RIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPVLVQRVTRKYLS 270

Query: 279 KA-GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               +  K+ H +R   AT   ++GA    +    G   +   E YT  
Sbjct: 271 AVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHV 319


>gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 331

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 92/337 (27%), Gaps = 28/337 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
              G+       G  R  R+     +      + A       +   +       ++  ++
Sbjct: 6   DAKGRKHIGLMVGGERIHRILPQGATAGDAKRLEAELRGALIKAPRSVNIPGDPSMSSML 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SR 126
             Y + A     +  +             K      R+     I+               
Sbjct: 66  GIYLEHAKGLR-SATTSAHHALRLGPWAEKYKASQAREFAAHVIKDMGALQKGPDGKLKP 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + P++  + L + +     A     +  N  L ++      +     + + ++Q     
Sbjct: 125 AYAPATINRSLATAKKGLALAWESNLIPENYGLRIKSLSVNNKREVFLSVDQVRQITQHC 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244
           +E  Q + A    L +G R  +  +   +H++ N   +     KT     + +       
Sbjct: 185 TE--QAQAAIWAALLTGARRGEIFQIRAEHIKENEIIVPASHTKTLRSRVIPIIPALRPW 242

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L   P+                      ++    KA +   + H +R   A+I    G  
Sbjct: 243 LVHFPLTM------------TIDGVKSSWRRARVKADMEHVNFHDLRHSCASILIALGVD 290

Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
            + +    G       + Y     ++ R  +     +
Sbjct: 291 LYTVSKILGHSNTQTTQRYAHLQVEQQREALNKLGML 327


>gi|290958002|ref|YP_003489184.1| integrase [Streptomyces scabiei 87.22]
 gi|260647528|emb|CBG70633.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 405

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 101/342 (29%), Gaps = 64/342 (18%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+   +  + +      L  N+   + +     +    G     ++TT+ +R+ ++ 
Sbjct: 54  ADSTVSAYLVYWLEGVAVHHLRENTHTRYAASIRLHLNPGLGAKKLARLTTRDVRTFLDG 113

Query: 126 RKH---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +                            +P +       ++   + AV ++ +  N  
Sbjct: 114 LRTTCQCCAQGRDTDRRSCCAIGQCCEKRLSPLTVTYVHAVLKSALEHAVHEDELPRNVA 173

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            +++    +    +P T  + +Q     + G +    +E  L +GLR  +      + + 
Sbjct: 174 RNIKTTAPRPRRFQPLTATEARQLLQAAN-GDRLHALYELALRTGLRKGELLGLHWEDVD 232

Query: 219 NNIFSIKTQKTGTI-------------------------------ITVELPDGFMKLLAM 247
            +  +    ++                                  I  E      +    
Sbjct: 233 LDGGTATIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKIHQEQQQEERQAAGT 292

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                   F     + ++ T  +  F+     +G+     H +R  +AT+  + G     
Sbjct: 293 NWADNGLVFTTPKGKPLDPTNLTRRFRRLLHSSGLRTIRFHDLRHSTATLLLEQGIDLVV 352

Query: 307 LMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSDD 347
           +    G   +      Y     R+RL  +    ++ ++ + +
Sbjct: 353 IKELLGHAHIGVTAGVYAHV--RLRLQRQAINTLNDLLGTGN 392


>gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4]
          Length = 420

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 26/302 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           T+  L   Y +     +L  ++ + +      ++          D+D   I    +    
Sbjct: 110 TISTLFD-YHEIMEKKNLRASTFVGYHVTKKHLLNFIRIKYHVSDYDLTAIDKAFVYEFY 168

Query: 124 ESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRP 173
              +            + A++ +   + +   A++ E+++ NP CL   +  +   G   
Sbjct: 169 AYLQGYKREGETVCAVNGALKHIQRFKKVMNVALQNEWISRNPVCLLNAKKTKVERGFLS 228

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             +    +        S  R  F F +Y+GL   D      +++   I            
Sbjct: 229 EKELKSIEEVPLPVNLSIVRDVFVFAVYTGLSFVDISNLTNENINVGIDKSLWLNYYRQK 288

Query: 234 TVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           T            + +L       +    N+          + + K  A +AGV K  + 
Sbjct: 289 TDIHAMLPLLQPAVCILKRYEAYHKGKRTNHVFPVPPNQVANRYLKKVAKEAGVEKNITF 348

Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
           H  R   AT      G     +    G  ++   + Y K  D   +  +   + + +  +
Sbjct: 349 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELYTRKE 408

Query: 345 SD 346
           S 
Sbjct: 409 SQ 410


>gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii]
 gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli]
 gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae]
 gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae]
 gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105]
 gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1]
 gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5]
 gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa]
 gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum]
 gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri]
 gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum]
 gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa]
 gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104]
 gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa]
 gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium]
 gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii]
 gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa]
 gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa]
 gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum]
 gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae]
 gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa]
 gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli]
 gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa]
 gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa]
 gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii]
 gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli]
 gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa]
 gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa]
 gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae]
 gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida]
 gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae]
 gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica]
 gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE]
 gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae]
 gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae]
 gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae]
 gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida]
 gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa]
 gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa]
 gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa]
 gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105]
 gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae]
 gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae]
 gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1]
 gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5]
 gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes]
 gi|321268198|gb|ADW78905.1| IntI [Escherichia coli]
 gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 337

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 407

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L   +R+            +A  +   +E+                D    +++ + I
Sbjct: 109 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 168

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  K       ++A ++L + + + + A+ + ++  +P L +              
Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 227

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +   ++  + G  
Sbjct: 228 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 287

Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T  + +  +     K+L      +           +   + + + K  A   G+ K+  
Sbjct: 288 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 347

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H  R   AT +   G +   +    G   V     Y +  DR
Sbjct: 348 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 350

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 91/335 (27%), Gaps = 30/335 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                 A     P     +   +   +    +  +  +A        S  +         
Sbjct: 8   ARVRADATRQPVPIDSPTSRKEQIRMSWLAAVDWFLANARRAGHKPGSIETRRQRIQAFA 67

Query: 104 RKSG--DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                 +     +T   I++ V+       +  +    L  ++  +   V +     NP 
Sbjct: 68  DWCAVRNLPPGYVTPDDIQNFVDHCLNINLSVFTINGRLRVLKTFYSEGVAEGIFLSNPA 127

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             V R +  T  + P +++ +Q+             +       +L +GLR  ++  A V
Sbjct: 128 DGVRRLREPTNAVLPVSEDHVQKLLAVFDKRQWVEFRDLAITVLVLDTGLRIREALLAKV 187

Query: 215 QHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINND 260
           + L              K G   TV       +LL+                    ++  
Sbjct: 188 EDLDLREGALWVPPVHAKGGKGRTVYFGQATRELLSEWLRKRGVGSDLLFPSVYLDVSGA 247

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQ 318
              ++   +       A +AGV     H +R   A      +G     L    G  +   
Sbjct: 248 YHPLSRHAYWKRLAQYAERAGVPHIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRT 307

Query: 319 AETYTKGAD---RIRLGIKN--SRRISSVVDSDDP 348
            E Y   A+   +  L  ++     +        P
Sbjct: 308 TERYLAVAETKAQKILTQQHSPIDHLGGAPGKRRP 342


>gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC
 gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 306

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 33/288 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHIRSGVES 125
           I  +        + +  +  S++       D    + G  D       I  +  R  +  
Sbjct: 5   IDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAH 64

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
            +      ++  + L + R  +++  R++ +  NP L V  PK +    R   +++ ++ 
Sbjct: 65  MQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKEL 124

Query: 182 ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
                +    G + R   E L   GLR S+     +  L  +   I+          V L
Sbjct: 125 VEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPL 184

Query: 238 PDGFMKLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGVN 283
               ++ L           +              N   ++++A            K  + 
Sbjct: 185 GSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLE 244

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  S H +R   AT   +AGA    +    G   +   + YT      
Sbjct: 245 RKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGER 292


>gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 384

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 104/358 (29%), Gaps = 55/358 (15%)

Query: 15  RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R  +G   Y YFR    + +          + AY                  K   TL  
Sbjct: 29  RNANGTKKYKYFRAKTKKEL-------KAKVDAY------KMDVALNGKPLDKTTVTLSE 75

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIR-KSGDFDYRKITTKHIRSGVESRKHTP- 130
            + ++        +A  +   + + ++  I     GD   + IT   I+    ++     
Sbjct: 76  WVYQFLFVHVIHEVAPTTFHRYVNLYEVHIKDSYIGDIGLQCITHTQIQRYFNNKTDKAK 135

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSE 188
           ++  +    +   FK A+   ++  NP   +  PK     + I+  T ++  ++      
Sbjct: 136 ATLQKIKNLLNKAFKSAIHNNFIRYNPMDGIIIPKTAKEAKEIKILTTQEQLRYIEASKA 195

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------I 233
                L     LY+G+R  +      +++     +I  +++                  I
Sbjct: 196 EPNG-LFLRLALYTGMRLGEVLALKWENVDLEQGTITVKESMKRSRVYSDDGNFIVEDVI 254

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN------ 283
                   ++L+ +  I  E       +       N +  +       T A +N      
Sbjct: 255 KEPKTKKGIRLIYIPDILIEELKQIEKEDGLVFDTNESTVNHMHDRICTAAKINPNKVYK 314

Query: 284 ---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
                       H +R   AT   +       +    G K +      Y+   D  + 
Sbjct: 315 GETATTVYGVGIHALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKR 372


>gi|295837361|ref|ZP_06824294.1| integrase [Streptomyces sp. SPB74]
 gi|197696127|gb|EDY43060.1| integrase [Streptomyces sp. SPB74]
          Length = 426

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/404 (11%), Positives = 115/404 (28%), Gaps = 76/404 (18%)

Query: 14  ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + + G+              +R+R+        +      +  S              +
Sbjct: 23  YQRKDGRWEAAGYVLAPGNTRKRVRVYGATRKGAMTKLTEKIAASNRGLPVA----AADS 78

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   ++ +        L  N+   + +     +    G     ++TT+ +R+ ++  + 
Sbjct: 79  TVSAYLTYWLDGVAVHHLRENTHTRYAASIRLHLNPGIGAKKLARLTTRDVRTFLDGLRT 138

Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                      +P +       ++   + AVR++ +  N   +V
Sbjct: 139 TCQCCARDRDSVRRSCCAIGQCCGKRLSPLTVTYVHAVLKSALEHAVREDELPRNVARNV 198

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +    +    +P T  + Q+     + G +    +E  L +GLR  +      + L  + 
Sbjct: 199 KTTTPRPRRFQPLTATEAQRLLHAAN-GDRLHALYELALRTGLRKGELLGLHWEDLDLDG 257

Query: 222 FSIKTQKTGTII-------------------------------TVELPDGFMKLLAMTPI 250
            +    ++                                     E      +    +  
Sbjct: 258 GTASIHRSLQRTRSQGLTVLNTKTLASERRIALPTECLSSLKAHQERQQEERQTAGTSWT 317

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                F     + ++ T  +  F+     A +     H +R  +AT+  + G     +  
Sbjct: 318 DNGLVFTTPKGKPLDPTNLTRSFRRLLHGAELRTIRFHDLRHSTATLLLEQGVDLVVIKE 377

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD----SDDP 348
             G   +      Y     R+RL  +    + S++     SDDP
Sbjct: 378 LLGHAHIGVTAGVYAHV--RLRLQRQAIETLGSILGPTDASDDP 419


>gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis
           Tohama I]
 gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I]
          Length = 326

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 85/298 (28%), Gaps = 41/298 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--- 128
           ++++ +        + ++   +     Q+ +++        ++   HIR  V        
Sbjct: 14  MADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGL 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            P S  + L + R  ++W      +  NP   V  PK      +  + E  Q        
Sbjct: 74  GPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPA 133

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
                    +    FE L  SGLR ++     +++ +   +  ++               
Sbjct: 134 RLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKG 193

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276
               +V +    +  L      +                      +++      +     
Sbjct: 194 GKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQLQLARL 253

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           A  AG+      H +R   A+    +      +    G   +   + YT+  D   L 
Sbjct: 254 AQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTR-LDFQHLA 310


>gi|167755354|ref|ZP_02427481.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
 gi|167704293|gb|EDS18872.1| hypothetical protein CLORAM_00868 [Clostridium ramosum DSM 1402]
          Length = 377

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 106/375 (28%), Gaps = 43/375 (11%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINS 63
            R    + + +    +  Y        +      + ST+               +E I  
Sbjct: 2   PRRGENIFRRKDGRWEARYVKAISTNNKKLYGSVYASTYTEVKQKRENICNSLNKEKIKK 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--- 120
                  L++ I E+         A      +   ++ ++    D    ++ TK +    
Sbjct: 62  SNINNQVLEYYIVEWLNVYRIKFKAPTYVKYYNVIYNYLLPYFKDIKANELNTKQVELFT 121

Query: 121 -----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                 G   +  +P +    L+  + +  +   +  ++IN    +  PK++ E  R  +
Sbjct: 122 ASLLKEGKNGKPLSPKTVKDILSLFKSIIGYIESEHNISINT--KIIYPKKQKEKERILS 179

Query: 176 KEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           KE+     ++   E    +      + +GLR  + C    + +      I   KT   I 
Sbjct: 180 KEEFINLNQTLLQEIDSCKFGVLIAMATGLRIGELCALKWKDISLKENYIYVNKTMQRIK 239

Query: 235 VELPDGFMKLL-------------------------AMTPIGKETFFINNDKQKMNATQF 269
               D    ++                                         + +     
Sbjct: 240 NIYSDNPKTIIIEDSPKSSTSNRKIPIPANLITLFKQFRQNDDCYLLTGRSDKFVEPRSL 299

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGA- 326
              F+     AG+ K + H +R   AT+  + G     L    G   +    + Y   + 
Sbjct: 300 ERKFRKYIKNAGIEKANFHMLRHTFATMCIEGGFEIKCLSEILGHSGSQITLDRYVHSSF 359

Query: 327 DRIRLGIKNSRRISS 341
           D  +       + S+
Sbjct: 360 DLKK---SWIDKFSN 371


>gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA]
 gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA]
          Length = 292

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 88/261 (33%), Gaps = 20/261 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESR 126
           K +++ Y+++      + N+  ++ +  +  ++     +        ++       + S+
Sbjct: 2   KEIVNNYKEALLKSHKSENTVYAYVTDVNLYVKYLKSKNMSIDETDNVSVLGYIQYLLSQ 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             +  S  + + S+R  + +   Q+ V+  P +  +      +     T +++ +     
Sbjct: 62  GKSERSINRIVISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEILTIDEVDRIIKIV 121

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGF 241
               ++G +     E +  +G++ S+     V  +   +  +K          + +    
Sbjct: 122 DKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYERLIPIGRSA 181

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + L      ++          F+N +   +         K  + KAG+ K  + +  R 
Sbjct: 182 TEALKEYLKIRDQVASAGVETLFVNLNGNHLTRQGVWRIVKEYSHKAGIKKEVNLNTFRH 241

Query: 292 FSATISADAGATAHELMATYG 312
             A      GA    +    G
Sbjct: 242 SFAVHLLQNGANVRAVQKLLG 262


>gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17]
 gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17]
          Length = 331

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 86/299 (28%), Gaps = 34/299 (11%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------- 119
           L   I  +         +LA+N++ S+     Q++        + I    +         
Sbjct: 7   LGPWIRRFLLEHLVAERNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVR 66

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------E 169
                  + R  T S+  Q L  +  L ++        I  C  +     K         
Sbjct: 67  LFLSHMEQQRNCTISTRNQRLGGIHALARFIAEHSPEHIGWCAQIRLIPFKKTSQPAIIY 126

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +P     +        +G + +    FL  SG R S++ +  +  +  +   ++    
Sbjct: 127 LDKPEMDALLAAPDDHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGK 186

Query: 230 -GTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATK------ 279
                   L    ++ L          +  F+N   Q M  +      K  A +      
Sbjct: 187 GNKQRRCPLWTSTLERLHVLVDGREATQPVFLNRCHQPMTRSGIHTLVKRCAARACARAP 246

Query: 280 --AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                  S H +R  +A     AG   + + A  G  ++     Y +   +     +  
Sbjct: 247 SLLNKPVSPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEIDLETKARALAA 305


>gi|296163572|ref|ZP_06846310.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886175|gb|EFG66055.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 399

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 101/359 (28%), Gaps = 27/359 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59
           P    + T  G+      Y    G  R+  L    E T   A   A       R+     
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+K     + +         +++  ++   D+ II   G    + +    
Sbjct: 89  AAKNAARKAPTMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPNMGRMKVQDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + ++   +  + A +    +R +F  A                P            +D
Sbjct: 149 VAALMKKLAYKRAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      +      +    + 
Sbjct: 209 ELVRIFRQLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T    +        L                 N+  + M   +    +      AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGSPYVLPSPNDPTRHMTYGEQYGGWTRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK--NSRRIS 340
             HG+R  + T  A++G      M   G KTV     Y    D+ +R   +   SRR++
Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVASRRLA 387


>gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 390

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 108/388 (27%), Gaps = 58/388 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKP 68
              R     Y    G     G+   +          A   + +     +     +P    
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--ST 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           +T K +  ++  S +   + V+S  + E   +  I +  +   + I     +  V     
Sbjct: 62  STFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISA 120

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           +++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F    
Sbjct: 121 QYSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIYKKFLEKD 180

Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------- 224
                                F  L Y+G+R  +        +     +I          
Sbjct: 181 ELFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPN 240

Query: 225 ---------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                       ++     D          +     F + +   
Sbjct: 241 NNKKQYQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYP 300

Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +   +  +W KA   K  +     S H  R     +  +AG    E+      K ++   
Sbjct: 301 LVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTM 360

Query: 321 -TYTKGADR-IRLGIKNSRRISSVVDSD 346
             Y K  +   +   +   ++   V  D
Sbjct: 361 NIYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 383

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 111/384 (28%), Gaps = 55/384 (14%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + +   G   Y            G  RRI      +         A +  T   +  +
Sbjct: 4   IKRYKNSSGDTRYEIFVSAGTDELTGKKRRIHKRGFRDKKEAA---LAASRFTLDADAGS 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
               +  T K +  E+  +            ++      ++   G+    KITT  ++  
Sbjct: 61  LSTNRSMTFKAVYLEWDAAYKNTVRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQA 120

Query: 123 VESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           V         +  ++LT+   + ++A+R+ Y+  NP   V  PK K +          +Q
Sbjct: 121 VNQWSKQVTRNYRRWLTTASRILRFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQ 180

Query: 182 FKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------ 223
             + +      +        F  L + GLR  +      + +     +            
Sbjct: 181 ELTRFFSYIDAKQEPQKTALFRILAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMN 240

Query: 224 -----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                   +   +  T+ +    M  L    + +   ++          Q          
Sbjct: 241 GRQLVQPPKTRKSRRTITMDSKTMSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKH 300

Query: 270 ------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                 + W K+      +    + HG R   A+    AGAT  E+    G   V     
Sbjct: 301 LLLHKPADWLKSIEDTHKIEHRITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLN 360

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
            YT          +   ++ + ++
Sbjct: 361 IYTHVT--KNQNKEAVNKLVAYLN 382


>gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria
           seeligeri FSL N1-067]
          Length = 381

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 115/369 (31%), Gaps = 50/369 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
             +        ++ Y FR         G+R +       T   A M          E   
Sbjct: 3   KRIKSYLNSKNEVRYMFRVYAGIDNMTGKRKQTTRRGFKTEREAKMELKRIEMQIFEEGG 62

Query: 63  -SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +KKP   + + S + +     ++  ++    + +F+  I+    D    KI     +
Sbjct: 63  LKTQKKPLKFEEVYSTWLELYT-QTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQ 121

Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPW 174
             + +   + P+S  +       +FK+A+    +  +P         E  +++ + I  +
Sbjct: 122 QVINAWSKSNPTSYKRLKNLTSRVFKYAISLHLIESDPFAFVVVPRGEMIEKEEKDITFY 181

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            K +++ F     + +     F  L ++GLR S++     Q +  N   +   KT +   
Sbjct: 182 DKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYINKTLSRGE 241

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFI---------------NNDKQ 262
                            + +    + +L      +                    N    
Sbjct: 242 HARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNKGNYYNP 301

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
               +     FK       +  ++HG R   A++  +AGA+  ++    G   +      
Sbjct: 302 SSTYSWLDNIFKHHTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNI 359

Query: 322 YTKGADRIR 330
           YT      +
Sbjct: 360 YTHVTQEKK 368


>gi|251783530|ref|YP_002997835.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392162|dbj|BAH82621.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 387

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 124/389 (31%), Gaps = 57/389 (14%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + + + ++G I+Y            G   R  +    +         AL        Y 
Sbjct: 2   NIKEYKKKNGTIVYRTSVYLGVDQVTGKKARTTITASTKKGVKIKARDALNN-FAMNGYT 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +   TT K L + + +S    ++  NSR S E      I+   GD    ++TT  I+
Sbjct: 61  VKEKPTVTTYKELTALWWESYK-NTIKPNSRQSMEGIVRLHILPAFGDCKLSRLTTPVIQ 119

Query: 121 SGVESR------KHTPSSAIQ-FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKT---E 169
             V             + A   FL ++ R + ++ V  + +  NP   V  P+++     
Sbjct: 120 QQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARDVIIPRKQNNKEH 179

Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            ++ ++ ++++QF ++         E     + ++ LL +G R  +        +     
Sbjct: 180 KVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVLALEWSDIDLEKG 239

Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN------NDKQK 263
           +IK  KT                  +E+    + LL      ++    +           
Sbjct: 240 TIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTP 299

Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                          +     AGV   S HG R   ATI   AG  A +L    G   + 
Sbjct: 300 FTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNIS 359

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345
               TY           K      + + +
Sbjct: 360 MTLNTYVHAT--KEGAKKAVSIFETAISN 386


>gi|209919452|ref|YP_002293536.1| putative phage integrase [Escherichia coli SE11]
 gi|209912711|dbj|BAG77785.1| putative phage integrase [Escherichia coli SE11]
          Length = 342

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 105/335 (31%), Gaps = 38/335 (11%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +LPP V K      K  YYF+      I L   ++ +    ++          +     
Sbjct: 11  NKLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV---- 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T   L +++  S ++  L   ++  +  +  +++   G      I   H+R  ++
Sbjct: 62  ----MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNIKPAHVRLYMD 117

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A     SM  +F+W   + YV  NPC       + +   R +   D +   
Sbjct: 118 KRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQG---VSKFSLKPRDYYFTDEEYIA 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +       + A E       R  D  +     + +    I+  KTG     +  +    
Sbjct: 175 IYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSERLTF 234

Query: 244 LLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295
            L       G+     N    + + T F+  ++     A       +  + H +      
Sbjct: 235 ALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL------ 288

Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                G +       E     G KT  Q  TY + 
Sbjct: 289 --KAKGISDYDGSSKEKQLFSGHKTEAQVLTYDRK 321


>gi|163853185|ref|YP_001641228.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163664790|gb|ABY32157.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 334

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 85/318 (26%), Gaps = 15/318 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R+     I   +  ++  +                      +  T+  L
Sbjct: 5   RKRGSSWQAQVRRQGSSPISKSFTSKADALLWARETERSIDRAELPTTIKDLQQITVADL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH--TPS 131
           ++ Y                       I           K+T   +    + R      +
Sbjct: 65  LARYEAEVTAKKRGA---DRERYKLRVIRSHPLASLSLAKLTAVAVSRYRDDRLKVVQGA 121

Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +  + L  ++  F+ A ++    +  NP   +  P       +    E  Q+  +     
Sbjct: 122 TVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPDPSRARDQRLEPEAGQKLHAAIGSA 181

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L     L   +G+R  +       H+  +  +     T       +      +   
Sbjct: 182 HAWYLRPLMELAIETGMRRGELLSLQWCHVSLDKRTAHLPITKNGHARTVALTPRAI--- 238

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             I K     +     ++     + ++    +AG+     H +R  + +   +AG +  E
Sbjct: 239 -EILKALPQTDGRVLPVSGNAVRLAWERLRKRAGLPSLRFHDLRHEAVSRFFEAGLSIPE 297

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G +       YT 
Sbjct: 298 VALMSGHRDTRMLMRYTH 315


>gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium]
 gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium]
 gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium]
 gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium]
 gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium]
 gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium]
 gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium]
 gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium]
 gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium]
 gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium]
 gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium]
 gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium]
 gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium]
 gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium]
 gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium]
 gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 287

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 80/267 (29%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ ++  +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QQYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++                  +             +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K  +        V +    + LL
Sbjct: 115 QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  AG+    S H +R   AT  
Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALTALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431]
          Length = 343

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 95/340 (27%), Gaps = 47/340 (13%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T  +  +GK +   Y    +G+R+R           A+ S       K+ ++     + 
Sbjct: 1   MTIRKQPNGKWLCECYPNGRNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKDDRR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES 125
             L  LI  +       SL   +    +        I    GD    ++T        E+
Sbjct: 60  R-LSELIELWY------SLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREA 112

Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170
           R                 P +      ++  +F    +   + A NP   +   K     
Sbjct: 113 RLKGEIRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +   + +++++  +  +E   P L       L +G R S++       L     +    K
Sbjct: 173 LAFLSTDEIKRLLAACAESQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTK 232

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                TV +       L        T                  F+    +AG+      
Sbjct: 233 GKKNRTVPISQDLYNELPKNRGRLFTPC-------------RKAFERAVKRAGIELPEGQ 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+     G     L    G   +     Y  
Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319


>gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli]
          Length = 337

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     Y 
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYX 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160]
 gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160]
          Length = 336

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 84/294 (28%), Gaps = 39/294 (13%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR 120
           L   +  +         +L+ N++ S+   F  ++                  ++ + ++
Sbjct: 7   LGPWLKRFLLEYLIKERNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVK 66

Query: 121 SGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +   + T      +  Q L ++R L  +  +     +  C  +     K       T 
Sbjct: 67  AFLADIEQTRHCGVVTRNQRLAALRSLANFIGQNSPEHLQWCGQIRVLPFKKAPRSTITY 126

Query: 177 EDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  +     +          +      FL  +G R  ++ +  +  L   +   +   +
Sbjct: 127 LEKPEMDELLAAAQGPSAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSS 186

Query: 230 GTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            TI           L          L       E  F+N     +         +    K
Sbjct: 187 VTIRGKGNKLRQCPLWLQTIAEIVPLIDGRGSTEHVFLNRRAVPITRFGIHTLVERYVQK 246

Query: 280 AGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A V          S H +R  + T    AG   + + A  G  ++D    Y + 
Sbjct: 247 AAVKVPSLTLKRVSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAET 300


>gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273]
 gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272]
 gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 93/292 (31%), Gaps = 20/292 (6%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A     T  T     I +     TT +  ++ +       +L   +   +          
Sbjct: 7   AVSKRRTLLTEDELKIATKSTYVTTDEEALNLFYTDCQLRNLRPYTIKYYRESLQT---- 62

Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                   +T   I++ +   +      ++    L + +  + +  + +++  NP   ++
Sbjct: 63  -KIKPLVLMTEDDIKNMIMEMQRRGLKVTTINTKLRAFKSFYNFLHKHKHIKKNPIADIK 121

Query: 163 RPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             K++ E +   +K+ ++            G +       +L + +R ++     V  ++
Sbjct: 122 LLKQRKEVVPTLSKDQIKLLLSLCDRKTFVGVRDYTIMMLMLDTAIRVNELANIEVADVK 181

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWF 273
           +N   I+  KT     V +     + + +    +     +      +             
Sbjct: 182 HNEIVIRETKTFFERIVPMSKKLKEQMEIYIKIRGYAESDKLFLNQDGNELKKRSIQTRI 241

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +     +G+     SAH  R  SA +    G  A  L    G  +++  + Y
Sbjct: 242 EYYGKLSGIKDVRVSAHTFRHTSAKLFIQNGGNAFHLQQLLGHTSLEITKKY 293


>gi|82542847|ref|YP_406794.1| phage integrase [Shigella boydii Sb227]
 gi|81244258|gb|ABB64966.1| putative phage integrase [Shigella boydii Sb227]
          Length = 387

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 KLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|308173707|ref|YP_003920412.1| phage integrase [Bacillus amyloliquefaciens DSM 7]
 gi|307606571|emb|CBI42942.1| putative phage integrase [Bacillus amyloliquefaciens DSM 7]
          Length = 381

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 103/360 (28%), Gaps = 47/360 (13%)

Query: 15  RTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R R     Y  +        +I +      T   A ++A          +         L
Sbjct: 5   RKRGSTWQYRIKHKDPLTHEQIEVSKGGFKTKKEAQLAARQEELRLNSDLEI-NGGDVLL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K  + ++      G++  N+ I  E     +I+    D   + I     +  +       
Sbjct: 64  KHYLKDWLTEYKQGTVRKNTYILHERNVKTKILPYFKDIKLKDIKPLRYQKFINHLAEQG 123

Query: 131 SSAIQF-------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S             ++    K   + E          + PK+K +     + +     K
Sbjct: 124 YSKRTIEIIHGTMFNALSTAVKPLKKLEENPCEGVTIPKIPKKKEKLAYINSDDISFFLK 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------- 228
               +     + F+ LL +G+R  ++     + +      I   K               
Sbjct: 184 IARQDNYLYYIFFKTLLETGMRKGEAAALQRKDIDLKNNYIHINKSLDFQVKEGEERFGE 243

Query: 229 ---TGTIITVELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNATQFS 270
                +   +++ +   K L                         F   D + +  +   
Sbjct: 244 TKTYESERRIKISNSLAKELTAHMKYLNDNRIVFNEVYEHELDLVFCREDGKPLPKSTLF 303

Query: 271 IWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                   K+G+NK   HG+R   A +  ++GAT   +    G K +    + Y+  +++
Sbjct: 304 NALNRILKKSGLNKMPIHGLRHTHAVLLLESGATMKFVQERLGHKNITITSDVYSHISEK 363


>gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 107/380 (28%), Gaps = 51/380 (13%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIR---LPYPHESTFIP-AYMSALTGSTPKREYI 61
           R    + K +    +  Y   +  G+ I      Y +           A++G        
Sbjct: 3   RRGENIHKRKDGRWEGRYIKGRADGKAIWGYLYGYSYSEVKTELTRRKAMSGFYQLSG-- 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
                       L   +  S     +  ++   ++      ++   GD    ++    + 
Sbjct: 61  -----ASMRFSELAELWLASF-AQGVKESTLTHYQYTLHKYLLPVLGDLPVSELNESTLE 114

Query: 121 S---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                         +    SSA +    ++ + K+A R  ++     L V+ P++K    
Sbjct: 115 RLFLQILSPSDNSHKPLGTSSAQECFGMLKRICKYAAR-LHLMPPLELCVKLPRQKKAEP 173

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           RP +  +    +SF  +   PR       +  GLR  + C             +  Q+T 
Sbjct: 174 RPLSLAEQAALRSFLLDPPTPRKIGVLLQMELGLRIGEVCGLKWSDFDLKNGILTIQRTV 233

Query: 231 TIITVELPD------------------------GFMKLLAMTPIGKETFFINNDKQKMNA 266
             I +                              ++ L+        F    + + +  
Sbjct: 234 CRIPLGDGHTKLIVQTPKTRKSTREIPLSTGLVAILRKLSKDVTPDTWFLSGTESRPVEP 293

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             +    +    ++ +     H +R   AT    AG     L    G    +   + Y  
Sbjct: 294 RCYRKSIRCYLKRSALRTIHPHVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVH 353

Query: 325 G-ADRIRLGIKNSRRISSVV 343
              +R +  ++    +S  +
Sbjct: 354 SDLNRKQKALQRVYALSDRI 373


>gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1]
 gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 334

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 38/305 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  R     L+ LI  Y  +      +  ++       D  + K G      +T  
Sbjct: 24  PPPAPGVRDGSIALRHLIDAYMAAYAGRDTS-RTQR-----LDWWVAKLGGVSLADLTDD 77

Query: 118 HI------------------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           H+                            + R   P++  ++  ++  +  WA R+   
Sbjct: 78  HVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIA 137

Query: 154 AINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD 208
             N        +    K E +R  +  +     +   + S PRL       L +G R  +
Sbjct: 138 PKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGE 197

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                   +          ++       + L    +  LA            + ++   A
Sbjct: 198 LEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHAGAANALVFPSTRRPDIA 257

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             F   +      AGV     H +R   A+  A  GAT  E+    G + +   + Y+  
Sbjct: 258 YNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHL 317

Query: 326 ADRIR 330
           A   +
Sbjct: 318 ATDHK 322


>gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 295

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 99/286 (34%), Gaps = 24/286 (8%)

Query: 72  KWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHI---RSGVE 124
           + L+ +Y          + N+ +S+    DQ    ++  G   +  +    +    +  +
Sbjct: 2   EELVDKYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSAVDQYQLLALIAEQK 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
            R  +P++  + L+++R  +++ VR + +  NP   V+  +   +       E   +   
Sbjct: 62  KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEIKQLL 121

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238
                  + G + R     L  +G+R S+     V  L  +I  I+          V + 
Sbjct: 122 AAPDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRERLVPIS 181

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           D  ++ L              G++  F+N    ++         +    +AG+ K  +  
Sbjct: 182 DQAVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEKAVTPR 241

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +R   A     +GA    +    G+  +   + Y K   +     
Sbjct: 242 TLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSAD 287


>gi|158425506|ref|YP_001526798.1| putative integrase protein [Azorhizobium caulinodans ORS 571]
 gi|158332395|dbj|BAF89880.1| putative integrase protein [Azorhizobium caulinodans ORS 571]
          Length = 445

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 96/354 (27%), Gaps = 37/354 (10%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLIS 76
           + Y   +G  RR  +      T   A  +A                + R    T+  +  
Sbjct: 48  VQYRTPEGRHRRRVIGRYGLMTVEQARDAARDILMAVAKGCDPEEAATRTDDLTIGAVCD 107

Query: 77  EYRKSAHW--------GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            Y   A            +  ++     S  D  I    G      +    I        
Sbjct: 108 WYLDEAEAGRILGKRRRPIKASTLAMDRSRIDAHIKPLLGKRIINTLKLGDIEGAQADIA 167

Query: 128 HTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +S                 A + ++++  + + AVR   +  NP   V R       
Sbjct: 168 AGKTSKARVGSRGGATTGGEGVAARTMSTLHSILEHAVRLGKITSNPAKGVRRLASTPRD 227

Query: 171 IR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            R             +      E      A  F L +GLR  +        L +   SI+
Sbjct: 228 RRLSRAEIEKLGKAMRIAEQDGEHPTGLAAIRFFLMTGLRRMEGLALERAWLHDEEGSIR 287

Query: 226 TQKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
              T +     +     + LL   P     FF   D  + +              A + +
Sbjct: 288 FPDTKSGAQTRVIGRAAVDLLLAQPQAGSRFFFPADWGEGHFVGIVRVLDRLCAMARLED 347

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            + H +R   A+++ D G +   + A  G       + Y    + +RL      
Sbjct: 348 VTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYIHIDEALRLAADRVA 401


>gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1]
 gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 406

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 92/363 (25%), Gaps = 50/363 (13%)

Query: 25  FRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKR--EYINSPRKKPTTLKWLISEYR 79
           F    GR+ R+              Y   L  +         NS  +   TL      + 
Sbjct: 25  FHHPDGRQQRVVKFSPVQTRRGAEQYERELRAALLNGTFGKENSSEENRVTLAQFAPRFL 84

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             +   +   +S ++     +  ++   G      I    I       +   S+A     
Sbjct: 85  TYSENNN-KHSSVVTKRQLLEDHLLPFFGHMALSAIGPAEIEDFKAIMRKKKSAARARKE 143

Query: 139 S------------------MRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRP 173
           +                  ++ +         +          P+               
Sbjct: 144 APTKAALLKRGDVEPKSLSLKTINNVLSALSKLLALAEEQRVIPQAPRVRLFGKLPKPTF 203

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NNIF 222
                 +  +   +   + R      L +GLR  +        L                
Sbjct: 204 DFLTFGEAERLIDAAEPEWRTLLLVALKTGLRQGELIGLQWSDLDLTQGRLNVRRTVWRG 263

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                K G   TV+LP   +  L           F   D Q + A + +   +    +AG
Sbjct: 264 VTDLPKGGRERTVDLPASAVDALKAHRHLRGRFVFCQEDGQPLTAGKMAQPLRRALHRAG 323

Query: 282 VNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           +++       H +R   A+  A  G     +    G  T++  E Y   + D  R  +  
Sbjct: 324 ISREEGRIGWHDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAVGV 383

Query: 336 SRR 338
             R
Sbjct: 384 LDR 386


>gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 289

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 17/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L     +       A  ++  +                   + + +R        +    
Sbjct: 9   LRQRMIEDMTIRKFAPKTQHDYLQRVKNFAVYL-RRSPDTASAEDVRRYQLHLTASGVGV 67

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +A Q ++++R  FK  + +  +           +  ++     + E++           
Sbjct: 68  PTANQTVSTLRFFFKVTLGRADLVERTA----FVREPSKLPVVLSPEEVACLLDAV-PAL 122

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248
           + + A      +GLR S+     V ++ +    I+ ++        V L    ++LL   
Sbjct: 123 KYKAALSVAYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGREYRYVMLSPHLLELLRAW 182

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGA 302
                        +       +         A      G   S H +R   AT   +   
Sbjct: 183 YKAARPQGWLFPGRDRVRQMTTRQLNRACHAAADMAEIGKPVSMHTLRHSFATHLLEQNI 242

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
               +    G   +D    Y + A + 
Sbjct: 243 DIRVIQVLLGHAKLDTTALYARVATKA 269


>gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20]
          Length = 337

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQPLPALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCADLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
 gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787]
          Length = 328

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 79/276 (28%), Gaps = 15/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +P T +  +  +  +      +  +   + +   Q++   G      I T+ +
Sbjct: 40  TRKDEENEPET-QDYLEIFLSAKRIEGCSEKTLTYYRNTIHQMMESIG-KTVCTIETEDL 97

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R         ++ +  +           F W   ++Y+  +P   + R K  +     +T
Sbjct: 98  RTYLSRYQAEKESSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSASVIKETYT 157

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E ++  +    +  +     + L  +G+R  +        +                  
Sbjct: 158 DEQLETMRD-NCDNLRDLALIDILASTGMRVGELVLLNRDDISFEERECVVFGKGDKERM 216

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L      +               ++M      +  +    +  + K   H
Sbjct: 217 VYFDARTKLHLQNYLDSRTDNENALFVSLKAPYKRMKIGGIEVRLREMGKRLNIEKVHPH 276

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G + +D    Y 
Sbjct: 277 KFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYA 312


>gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 409

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
           +T  +E     ++   TL  L   +           ++  +  ++     ++        
Sbjct: 93  ATAVKEAFQGSKETRMTLLKLFDRHIGEVRARVGIDVSHRTLPNYLYTRSRLADFVSSRF 152

Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D  + ++  + IR   E     +     +   +L  ++ + + A ++ +        
Sbjct: 153 KVSDLAFCQLNEQFIREFQEYVVIEKGLGVQTVRHYLAILKKICRIAFKEGHSDKFYFEH 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
            + PK+K    R  +KED ++ +     G +P     R  F F  Y+G    D       
Sbjct: 213 YKLPKQKETAPRALSKEDFEKIRDIELTGCRPEHSIVRDMFLFACYAGTSYVDVVAITPD 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272
           +L  +       K             +KLL       + +  +        +        
Sbjct: 273 NLSRDDSGALWLKY--RRGKNGQLSRVKLLPEAIDLIDKYRDDTRATLFPVIPYQALKWC 330

Query: 273 FKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +   K G+      H  R   +T+   + G     +    G   +   + Y +   + 
Sbjct: 331 LTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKK 390


>gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402]
 gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 339

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 86/281 (30%), Gaps = 32/281 (11%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH--------- 128
            +     +L+  + I++   F  +     + D   KIT K  R  +   K+         
Sbjct: 27  LEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHVHYKDKL 86

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      S+   ++   + +++  V   Y+  NP  +++  K++ E I+    ED+
Sbjct: 87  HHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDI 146

Query: 180 QQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII 233
            +  +     +    +   A    L +  R  +     +  +  +         K     
Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN--KSA 286
            V       KLL       + +  +         K     F    K    +  +    + 
Sbjct: 207 YVMFSLKTKKLLVELIDEMKDYNNDFVFLAVDGGKFTNQAFRNQLKKYCKEYNIKTNITP 266

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H  R  ++ +  + G     L    G K +   E Y   ++
Sbjct: 267 HMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSE 307


>gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa]
          Length = 337

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSCLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|56552826|ref|YP_163665.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544400|gb|AAV90554.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 399

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 98/365 (26%), Gaps = 35/365 (9%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59
           P    + T  G+      Y    G  R+  L    E T   A   A       R+     
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+K     + +         +++  ++   D+ II   G    + +    
Sbjct: 89  AAKNAARKAPTMKEFCHTFIEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + ++   +  + A +    +R +F  A                P            +D
Sbjct: 149 VAALMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      +      +    + 
Sbjct: 209 ELVRIFRQLEHLEAVGLENYVIPLAIRLQFEFAARRSEICPLEWDWIDLEKRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T    +        L                 N+  Q M   +    +      AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTQHMTHGEHYGGWTRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  + T  A++G      M   G KTV     Y    D+            RL I
Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388

Query: 334 KNSRR 338
             + R
Sbjct: 389 TGASR 393


>gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 286

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 87/270 (32%), Gaps = 23/270 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR 126
             EY K+  +     N+  S+    +  +R   D         +  +      +S +  +
Sbjct: 5   FEEYLKTQDFT---ENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKSYLLRQ 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
              PS+  + + S+R    + + +  +  +    +++ K  T         K+D+ +F+ 
Sbjct: 62  NLRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRR 121

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
              +  + R      L   +G+R S++    ++ ++ +    K +  G   +        
Sbjct: 122 TVHQFGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVKIWGKGRSYREVPLNS 181

Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                     +    +             +            A  A V+   H +R F A
Sbjct: 182 DARKYLSEYLKKRPYSETNYLFVTSTGKPLTRNTAYKIILKYAKLASVDLHPHMLRHFFA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
               D G   +++    G + ++    Y K
Sbjct: 242 QTLIDKGLNLYDVQQLLGHQRIETTLRYKK 271


>gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 413

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVES 125
            K  + EY          +  +  S  S    +++         IT      +I    + 
Sbjct: 117 FKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKRHDE 176

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDM 179
                 +    +T +R  FK+A  +         S++ P+                ++ +
Sbjct: 177 DGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRVYAHENLPSFVPYNIVQQIL 236

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
           Q  K     G +       L   GLRCS+     ++ +     ++  ++           
Sbjct: 237 QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPL 296

Query: 236 --ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
              + +  ++ +                     ++++ +      K +    G+      
Sbjct: 297 LPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYG 356

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + G +  E+    G   +D    Y K 
Sbjct: 357 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKV 396


>gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 324

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 20/287 (6%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YR 112
           K+E       +   ++  I ++       SL+  +   ++      +   G  +      
Sbjct: 4   KKECRFKRVVEKKKIEEAIQDFLLDCEVRSLSKWTIDFYKRTLKPFV-FFGKQNSVEYVN 62

Query: 113 KITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPK 165
            IT + +   +   K +    ++   +L  +R    +  ++E+    + IN     E+ K
Sbjct: 63  DITKEMVNKYIAHLKDSIENTTTINTYLRGLRTFLNFLKKEEFLENEIEINMLKEEEKIK 122

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------N 219
                            K       +  +   +LL +G R S      V  +        
Sbjct: 123 ETYSDEDIKKLLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENGIVT 182

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKAT 278
              S       + I+  +     + +A   + ++ + F +    +M         +    
Sbjct: 183 IKHSKNKSHYFSPISNTMCKILREYIATWNLKEDDYLFPSQSGAQMTKNTIEKAIRDYNK 242

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K GV  +  H  R   A           +L    G KT++    Y +
Sbjct: 243 KRGVKLTSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVR 289


>gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++       IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHRVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 92/304 (30%), Gaps = 32/304 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIR 120
           P   P +L  L+  +       + +  +      +    I  + D        IT   + 
Sbjct: 24  PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83

Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                            +  +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143

Query: 172 RPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           R     D  +           +G++ R   E L  +G+R S++ R  +  +       +I
Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273
           +  K      + L +  +  L           +     +                 +   
Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 AG+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKN 335
            +  
Sbjct: 324 AVHA 327


>gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 345

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +        +        ++ G  
Sbjct: 15  DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +                  +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K S H  R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + R    +  
Sbjct: 313 YTQVSIRALQAVHA 326


>gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
 gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis
           L2-32]
          Length = 323

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 80/270 (29%), Gaps = 14/270 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           + P T+   I  +  +      +  S   + +   +   +        ITT  IR  +  
Sbjct: 40  RGPETMTECIDLFLAAKKLEGCSERSLRYYATTLSRFATEI-SRPAHDITTDDIRDYLTR 98

Query: 126 RKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +       +   F W   ++Y+  +P   +++ +        ++ E ++Q
Sbjct: 99  YSRDGRVGKTTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRMLKPVYSDESLEQ 158

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVELPD 239
            +    E ++     + L  +G+R  +  +   + +  +                     
Sbjct: 159 LRDACKE-TRDLAMIDLLTSTGIRVGELVQLNRRDIDFDARECVVHGKGDKERRVYFDAR 217

Query: 240 GFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
               LL       +         +   +++  +      +     +GV     H  R+  
Sbjct: 218 AKTHLLVYLEQRMDDEPALFVSLHRPFKRLEISGVEARLRKLGDDSGVKHVHPHKFRRTL 277

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           AT + D G    ++    G   +D    Y 
Sbjct: 278 ATKAIDKGMPIEQVQVLLGHSKIDTTLCYA 307


>gi|124514903|gb|EAY56414.1| putative phage integrase [Leptospirillum rubarum]
          Length = 343

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 104/345 (30%), Gaps = 29/345 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G      +K    +I            A+         +  ++     + TTL   
Sbjct: 5   RKRSGSWQALVKKKGFGQI-ARTFDTKAAAEAWAKVTESEMTRGVFVTRKESENTTLDEA 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  Y +            +S             +     I  K I    + R    + ++
Sbjct: 64  LGRYEREVTPSKKGRVQELSRLRILKN--SFLANRSLASIQGKDIARYRDDRLKDVSEAT 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + LT +  +FK A+++  +A   NP  ++  P  + E                 SE  
Sbjct: 122 LRRELTILSQVFKVAMKEWGMAGLANPVDAIRLPSGRGEVRDRRLLPGELDRICESSESP 181

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL--- 245
                    + +G+R ++      + +     ++     K G    V L    +++L   
Sbjct: 182 ILPSIARLAIETGMRQAEIAGMTWELVDLKKRTVTLLDTKNGEKRIVPLSMEAVRILSGL 241

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------KSAHGVRKFSA 294
                  +        +   +   ++    ++ K    G +         + H +R  + 
Sbjct: 242 PRRIDEKVWGVQSHAVSVAWRRAVSRARAVYEKKCQAKGEDPDPSFLADLTFHDLRHEAT 301

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +   + G    ++ A  G KT+   + YT       L  ++  ++
Sbjct: 302 SRFFEKGFNPMQVSAITGHKTLQMLKRYTH------LKAEDLAKL 340


>gi|298369050|ref|ZP_06980368.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283053|gb|EFI24540.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 356

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 97/317 (30%), Gaps = 17/317 (5%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+       R   GRRIR           A            ++ +   K     +    
Sbjct: 6   RNDVYYVDIRTKGGRRIR-QSAGTKNKHEAQRLHDKLKYELWQHEHFDEKPKRVWEEAAV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            + K             S      ++  + +        I+   I   V+    + S+  
Sbjct: 65  RWIKEKSEK-------KSIRDDISRLRMLPQLRGVFLHHISRDFIMDVVDRLPCSNSTKN 117

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           ++L  +R +   A  +     N      + K++      W K +  +        +  R 
Sbjct: 118 RYLALIRSILYKAQNEWGWIDN--APKLKLKKEAAKRIRWLKPEEAERLINALPDNHWRA 175

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              F   +GLR  +      + +              K+G  I V L D  +++L+    
Sbjct: 176 IAIFSFCTGLRQRNVFGLRWEQVDLDRKTAWIYPDETKSGRPIGVPLNDVAVRVLSERMG 235

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
             ET+   N + K  +   S  +K    +AG+ N   H +R   A+     G     L  
Sbjct: 236 IHETYVFTNRENKPVSALSSKMWKRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKE 295

Query: 310 TYGWKTVDQAETYTKGA 326
             GW+ +D    Y   A
Sbjct: 296 MGGWERLDMVMRYAHLA 312


>gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 366

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 91/330 (27%), Gaps = 34/330 (10%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           GR                  A+             R+ P  +K +I  Y        LA 
Sbjct: 4   GRWPEWSVTAARERAKELRRAIDEGRDPLAVREDFREAPQ-VKDMIDRYIAEH-LPKLAK 61

Query: 90  NSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE----------------------SR 126
           N+     S   +++    G+    +IT   +   ++                        
Sbjct: 62  NNAGDQVSMLRKMLEPAWGNKLVTEITKSDVARFLDFVAEGRPRPSKAKPNNRARKLQGH 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSF 185
           K TP  A +    +R +F  A+  E+ A NP      R ++  E      +         
Sbjct: 122 KPTPIRANRMGEVLRKMFTLAMEWEWRADNPVQGFHRRIEQARERFLGPEELTRIAVVLD 181

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244
            +E  +        + +G R  +   A  +    + +   K   T     +       ++
Sbjct: 182 NAEDQRGAAIIRMCMLTGARVGEVRTARFEQFNLDYVIWSKPAATTKQRKIHRVPISQEV 241

Query: 245 LAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
           + +    +      N              +   ++     +A +     H +R   A++ 
Sbjct: 242 VTIVRKRQMVVPHGNPWLFPGETVGQPVREIRRFWARVQKEADLPDVRIHDLRHTFASLL 301

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA+   +    G   +   + Y    D
Sbjct: 302 VSGGASLEMIGRLLGHSQMQTTQRYAHLMD 331


>gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1057]
          Length = 328

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L+  +  +      +  S   ++   + +         R +TT  +R       + RK +
Sbjct: 53  LLELFISAKRIEGCSEKSLKYYKIVIENMFTSL-KTAIRDLTTSDLRTYLAHYQQERKSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K        ++ E ++  +    E 
Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACHE- 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +      + +           K  +   V         L   
Sbjct: 171 IRDLAMIDLLASTGMRVGELVGLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230

Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              ++           +              +    KA +NK   H  R+  AT + D G
Sbjct: 231 LDSRQDDNPALFVSLSSPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA 312


>gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4]
          Length = 317

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 80/289 (27%), Gaps = 18/289 (6%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A+   +     +    + PR+    +  L+  + +      L+             +   
Sbjct: 2   AWERYIRAKVQETPEWSPPRRDERFVVELVEIWYRHHGAA-LSAG--ADTRRRLLAMCEA 58

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQ-EYVAINPCLSV 161
            G+      +          R     +A         +R +F    R   +   NP   V
Sbjct: 59  MGNPRAESFSADLFAEYRTRRLEAGVTANNMNREHAYLRAMFNELGRLGHWTKENPLRHV 118

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN 219
              K +   +     + ++   +  +EG      L  +  L +G R  ++       ++ 
Sbjct: 119 RAFKVQESELTYLVPQQIRGLLAALAEGRNVHVLLISKVCLATGARWGEAEGLRRTQIKG 178

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                   K+    +V + D   + L                +  ++      F+    +
Sbjct: 179 GQIQFVKTKSSKARSVPITDALERELIAHFGNYGDSDTGRLFEASSS-----AFREAVER 233

Query: 280 AGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           AG+     +  H +R   A+     G     L    G  ++     Y  
Sbjct: 234 AGLVLPDGQLTHVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAH 282


>gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 369

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 103/312 (33%), Gaps = 41/312 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
           P   P T+  L   +  S    ++   +  S+   FD  I  + G++   +++   +   
Sbjct: 56  PVDDPMTVSELFDAWIFSRK-NNIKQTTYASYCYMFDHYIRCRLGEYRIDRLSAFILERV 114

Query: 123 VESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +            + +  +       ++ LFK+   +  +  +   +V  PK ++  I+ 
Sbjct: 115 LSELIECGGKNGHQLSSKTVKDITVMLKSLFKYGEVEYSLPDSM-KNVTPPKCESAEIQV 173

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           + ++++ + + +    +   L     LY+GLR  + C      +         +KT T I
Sbjct: 174 FKEQEIVKMRQYAIHSNISDLGILLCLYTGLRIGEICALQWGDIDLIDNVFHVRKTLTRI 233

Query: 234 TVELPDGFMKLLAMT--------------------------PIGKETFFINNDKQKMNAT 267
                     ++ +                               + +F+   ++     
Sbjct: 234 PNPDGSKPKTIVIIDTPKSKRLVRDIPIPTFMLKRLTEVKKHQQNDDYFLTGTQKYTEHR 293

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
            +S  +K+   + GV  K+ H +R   AT     G     +    G  +V    E Y   
Sbjct: 294 SYSSRYKSFLKRIGVPYKNFHVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHS 353

Query: 326 -ADRIRLGIKNS 336
             D  R  ++  
Sbjct: 354 DMDMKRQQLEKL 365


>gi|9635493|ref|NP_059584.1| Int [Enterobacteria phage P22]
 gi|168240064|ref|ZP_02664996.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450412|ref|YP_002044308.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|138565|sp|P04890|VINT_BPP22 RecName: Full=Integrase
 gi|21914435|gb|AAM81400.1|AF527608_22 Int protein [Salmonella phage P22-pbi]
 gi|15642|emb|CAA27685.1| unnamed protein product [Enterobacteria phage P22]
 gi|8439580|gb|AAF75002.1| integrase [Enterobacteria phage P22]
 gi|16209133|gb|AAL09889.1| integrase [CRIM helper plasmid pAH130]
 gi|16209140|gb|AAL09894.1| integrase [CRIM helper plasmid pAH131]
 gi|28394284|tpg|DAA00998.1| TPA_inf: integrase [Enterobacteria phage P22]
 gi|157734732|dbj|BAF80738.1| integrase [Enterobacteria phage P22]
 gi|169658864|dbj|BAG12621.1| integrase [Enterobacteria phage P22]
 gi|194408716|gb|ACF68935.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339757|gb|EDZ26521.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 105/375 (28%), Gaps = 60/375 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F   +G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEGACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I S ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKITNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    ++ P+ K
Sbjct: 121 LMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      E    +   EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECQE--PLKSVVEFALSTGLRRSNIINLEWQQIDMQRKVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y        
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAH------ 351

Query: 331 LGIKNSRRISSVVDS 345
           L   +    +  +DS
Sbjct: 352 LAPNHLTEHARQIDS 366


>gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180]
          Length = 233

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 13/217 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTE 169
             ++    I          PS+  + + ++  +F        ++  NP   ++  K    
Sbjct: 14  LTELRVSRIEQ-----GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNER 68

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +   +K +  Q     +E    RLA E LL +G R  +      + + +   +    K 
Sbjct: 69  EMGYLSKSECVQLLDALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKN 128

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
               TV + +   + +           ++        +      K  A      ++ H +
Sbjct: 129 SKNRTVPISESLFEKIKKRGGKLVFPTLD-------YSLVRDVIKTVAPDVPDGQAVHAL 181

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R   A+     G     L    G   +     Y   A
Sbjct: 182 RHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLA 218


>gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820]
 gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820]
          Length = 306

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 78/281 (27%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123
           L++ + E+++   + +L+  +   + +  ++      + +   +          ++R   
Sbjct: 3   LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCK 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
           ++R +   +    L  +R+ F +   +E +        + +P ++   I  +T   +QQ 
Sbjct: 63  KTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTKIEVFTDYHIQQM 122

Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             ++           G +       LL +G+R  +      + +     S+         
Sbjct: 123 LRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARKQ 182

Query: 234 T------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                         E      K L   P    T                           
Sbjct: 183 QSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFKD 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V  S H  R   A      G     L        +   E Y
Sbjct: 243 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 283


>gi|71904526|ref|YP_281329.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94991460|ref|YP_599560.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
 gi|71803621|gb|AAX72974.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes phage 6180.4]
 gi|94544968|gb|ABF35016.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10270.5]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 124/389 (31%), Gaps = 57/389 (14%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + + + ++G IIY            G   R  +    +         AL        Y 
Sbjct: 2   NIKEYKKKNGTIIYRTSVYLGVDQVTGKKARTTITASTKKGVKIKARDALNN-FAMNGYT 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +   TT K L + + +S    ++  NSR S E      I+   GD    K+TT  I+
Sbjct: 61  VKEKPTVTTYKELTALWWESYK-NTIKPNSRQSMEGIVRLHILPAFGDCKLSKLTTPVIQ 119

Query: 121 SGVESR------KHTPSSAIQ-FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKT---E 169
             V             + A   FL ++ R + ++ V  + +  NP   V  P+++     
Sbjct: 120 QQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARDVIIPRKQNNKEH 179

Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            ++ ++ ++++QF ++         E     + ++ LL +G R  +        +     
Sbjct: 180 KVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVLALEWSDIDLKKG 239

Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN------NDKQK 263
           +IK  KT                  +E+    + LL      ++    +           
Sbjct: 240 TIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTP 299

Query: 264 MNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                          +     AGV   S HG R   ATI   AG  A +L    G   + 
Sbjct: 300 FTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNIS 359

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345
               TY           K      + + +
Sbjct: 360 MTLNTYVHAT--KEGAKKAVSIFETAISN 386


>gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 329

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   + 
Sbjct: 53  EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +           F W   ++++  +P   + + K  T     ++ E M+  +    +
Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDHILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  ++ +                  V         L  
Sbjct: 171 SLRDLAIIDMLASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++              +++  +   I  +    K  +     H  R+  AT + D 
Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|328947969|ref|YP_004365306.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448293|gb|AEB14009.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 330

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 83/278 (29%), Gaps = 15/278 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+  +  + H    +  S   ++S   + I       + +I T+ +R  +   +     +
Sbjct: 55  LLENFLAAKHVEGCSERSIKYYKSTLQKAITIL-HKPFNQIETEDLRKYLSDYQKINNAS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   + Y+  +P   + + K        ++ E +        + 
Sbjct: 114 RMTIDNVRRILSTFFTWLEDENYILKSPVRRIHKIKTAKLIKETYSDETLVL-LRDNCKT 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMT 248
           ++     + L  +G+R S+      Q +                  V         L   
Sbjct: 173 TRDLAIIDMLASTGMRVSELVTLNKQDVDFVNRECVVFGKGSKERPVYFDARTKIHLLNY 232

Query: 249 PIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              ++               ++  +   I  +       +     H  R+  AT + D G
Sbjct: 233 LNERKDNNPALFVSLLEPHNRLQISGVEITLRKLGRSLNIQKVHPHKFRRTLATQAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               ++    G + +D    Y    D+  + + + + I
Sbjct: 293 MPIEQVQRLLGHQKIDTTMEYA-MVDQQNVKVSHKKYI 329


>gi|315221869|ref|ZP_07863781.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
 gi|315189102|gb|EFU22805.1| site-specific recombinase, phage integrase family [Streptococcus
           anginosus F0211]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 102/371 (27%), Gaps = 48/371 (12%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G  +Y         +  G++++          + A                 
Sbjct: 9   ITEVKKKNGTTVYRASVYLGVDQVTGKKVKTSVTGRTRKEVKAKAQQAQIDFKLNGSTVK 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
              +  T + L   + +S     +   +  + +    + +I   G     KIT  +I+  
Sbjct: 69  KEMQVRTYQELADLWLRSYQLT-VKPQTFRATQRMLYNHLIPAFGTMKPNKITVYYIQDF 127

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
           +              +  R + ++ V  + +  NP   V  PK      +          
Sbjct: 128 INDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVPKRENKVIKFIAPENI 187

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + M+   +         + +  LL +G R  +        +     +I   K    
Sbjct: 188 KALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNR 247

Query: 233 I--------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +                           +         L +        F    K+  N 
Sbjct: 248 LLKLIGTPKSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQVPTVVFATPTKEYQNM 307

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                    +  +    + + H  R   A++  +AG +  EL    G  T+      Y+ 
Sbjct: 308 ATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSH 367

Query: 325 GA-DRIRLGIK 334
            + D+ +  + 
Sbjct: 368 LSKDKEKEAVS 378


>gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 329

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 110/329 (33%), Gaps = 44/329 (13%)

Query: 24  YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y+ K  G    I      ++    AY   + G           RK   T   L  ++  S
Sbjct: 23  YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFIQLWRKFLAS 71

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140
           A +  LA  ++  + ++   I+   GD + + I  +HIR  +++R       A    +SM
Sbjct: 72  ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             +F+W+ ++ YV  NPC+ V++  +           D +    + +     R A E   
Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRY---ITDEEYRAIYNNATPAVRAAMEIAY 188

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFIN 258
               R SD  +     +      I+  KTG        D       +      +      
Sbjct: 189 LCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRT 248

Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHE-----L 307
              ++ +   F+  ++     AG      ++ + H +           G + +E      
Sbjct: 249 MYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL--------KAKGISDYEGTAKDK 300

Query: 308 MATYGWKTVDQAETYTKGA------DRIR 330
               G KT  Q   Y +        DR R
Sbjct: 301 QKYSGHKTESQVLVYDRKVKMSPTLDRKR 329


>gi|315656318|ref|ZP_07909209.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493320|gb|EFU82920.1| phage integrase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 358

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 40/358 (11%)

Query: 14  ERTR-HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + +  G     +Y+    G++++       T   A          +            T
Sbjct: 4   YKDKAKGTWYASFYYEDWTGKKVKKMKRGFPTKREAL------EWERTFLQQQTADLEMT 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
            +  ++ Y        +  N+  + E     +++   G      I +K + +        
Sbjct: 58  FENFVAVYVADMKGR-IKENTWGTKEHILYKKLVPYFGKRKMCDIHSKEVIAWQNEMLGY 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDM 179
                  ++P         +  +F  AVR   + +NP        +     +  WTK + 
Sbjct: 117 RDKNGKPYSPVYLKTLHNQLSAVFNHAVRHYNLKVNPAAQAGNMGKPKGREMLFWTKAEY 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            +F     +      AFE L + G+R  +              ++   K+          
Sbjct: 177 LKFAEAMMDKPLSYYAFEMLYWCGVREGELLALTPGDFDFEKQTVTISKSYQRIKGKDVI 236

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      +++P    + +             +    +  +         A +AGV 
Sbjct: 237 TDPKTPKSNRVIQMPAFLCEEMRDYIKSLYGVKPTDRIFTVTKSYLHREMDRGAKEAGVK 296

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +   H +R    ++  D G TA  +    G +++D    Y       +   + + ++ 
Sbjct: 297 RIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAHLFPTRQ--AEMADKLD 352


>gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 407

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 88/336 (26%), Gaps = 29/336 (8%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREY----INSPRKKPTTLKWLISEYRKSAHWG 85
             R  +                     + +         + +          Y       
Sbjct: 78  KPRTPIERQQNKETFELATKIRAEREQQFKESMLGYRLKKDRNVNFLDYYQAYIDCYTKK 137

Query: 86  SLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSAIQ 135
            L        +   ++      +             IT   +   VE  +       A  
Sbjct: 138 DL-----RMIKIALNRFKDFLKEQYPVYEFSIKPELITKDMMEHFVEYLQSRSVGEGAKS 192

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQP 192
                + + ++A+  E +  +PC  V     +    +      +        + +E    
Sbjct: 193 IYQRFKKVVRYAIDHEVMLKDPCKGVVCKVDEQILRKDVLSMDEIQSLIQCHYDNENPNV 252

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTP 249
           R AF   LY GLR  D      +++      +K ++  T          + L   L    
Sbjct: 253 RRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSANSGVVIPLNDGLLSLI 312

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                   ++     +        K    +AG+NK  S H  R   A    + GA    +
Sbjct: 313 GEAPDDLDSSIFNLPSYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTV 372

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 373 SSLLGHSGLKHTEKYTRAVD--KLKSEAINSLPELK 406


>gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 416

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/380 (10%), Positives = 102/380 (26%), Gaps = 55/380 (14%)

Query: 19  GKIIYY-----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           G + +            +   +GRR R+P    +             +         R+ 
Sbjct: 31  GSVYWREDRQRWVIEIDYGVVNGRRKRVPRYFRTQEEAIEEQRKARQSKADGLTTLDRRS 90

Query: 68  PTTLKWLISEYRKS-AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
                  ++ +          A +++ ++     + I    G     ++  + ++  +  
Sbjct: 91  R--FADFLTYWLDEIVDPSERAESTKSNYRVMVNNHIRPALGSRRLVELKHEDLQRFLNR 148

Query: 126 R---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-KEDMQQ 181
           +    ++ S+     + +R     AV  E ++ N   ++  PK +           D   
Sbjct: 149 KAADGYSTSTMRTLRSVLRQALNEAVITEKISRNVAETLRVPKARKPKRNVAALSRDDGL 208

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------- 233
                ++ ++    +  L   GLR  ++          +  +++  +  T +        
Sbjct: 209 RLLAEAKSTRHYALYVLLAMVGLRRGEALALRWSDFDESAGTLRVVRQVTRVSGVKGLVV 268

Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                            +            F +     M     
Sbjct: 269 GPTKSQAGTRTLTLPTRCVRVLQAHRTAQHAHRQAAGKRWKENGLIFPSTVGTHMEPRGL 328

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           +        +AG+     H +R  +AT++   G    ++    G   +      Y    D
Sbjct: 329 NTHLSKLCQRAGLPHLGPHALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIYVDLVD 388

Query: 328 RIRLGIKNSRRISSVVDSDD 347
            +      + ++ +  D  D
Sbjct: 389 SVHR--DAASKLDAWFDEPD 406


>gi|30061863|ref|NP_836034.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
 gi|30040107|gb|AAP15840.1| putative phage integrase [Shigella flexneri 2a str. 2457T]
          Length = 387

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 107/375 (28%), Gaps = 61/375 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E  +     EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVD 344
            L   +    +  +D
Sbjct: 352 -LAPNHLTEHARQID 365


>gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
 gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas
           sp. S17]
          Length = 299

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 29/272 (10%)

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYV 153
           + S         G     +     +R   E       ++  +   ++R  + +   +   
Sbjct: 30  YRSDLTLAGEAMGG--LAEADEAALRRLAEGWACLATTTVARKAAALRRFYAFLHEEGLR 87

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSG 203
             +P  ++ RP ++    +  +  D+ +  +   E            +     E L  SG
Sbjct: 88  VDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIGVAHPAPNDLRLAALIELLYGSG 147

Query: 204 LRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK- 261
           LR S+        +  +   +    K G    V + D     +A   +   T        
Sbjct: 148 LRASELVALPRNAIHPDRPFLILRGKGGAERMVPISDRARAAVAAWRVHVPTDKAWLFPG 207

Query: 262 --QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             + ++  +     KA A +AG+     S H +R   AT     GA    + A  G   +
Sbjct: 208 GKRHLSRIRLYQLVKALAAEAGIPPDRVSPHVLRHAFATHLLGGGADLRAVQAMLGHADI 267

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              E YT            + ++  +V++  P
Sbjct: 268 ATTEIYTHVE---------ATQLVELVNARHP 290


>gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
 gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM
           43043]
          Length = 319

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 28/308 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRK 113
                 P  +P  L+ ++SE+ +        + ++  ++ S  + +       G  D  +
Sbjct: 9   EAVPTQPAPEPAGLEAVLSEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVAHGLSDLGE 68

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +    +RS + ++    ++               KWA R   +  +P L +  P+R    
Sbjct: 69  LRLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPSLRLVAPRRSRTL 128

Query: 171 IRPWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                + +                    + R   E L  SG+R  +     +  L     
Sbjct: 129 PDVLKQREASAMLDVAAVRADDADPIHVRDRAVLELLYASGIRVGELVSLDLDDLDLRER 188

Query: 223 SIKTQKTG-TIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIW 272
           +++    G     V         L            P      F+     +++  Q    
Sbjct: 189 TVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARVDPRQVRSL 248

Query: 273 FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
                +      +   HG+R  +AT   + GA    +    G  ++   + YT    +R+
Sbjct: 249 VHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERL 308

Query: 330 RLGIKNSR 337
           R   + + 
Sbjct: 309 RKSYEQAH 316


>gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f]
 gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f]
          Length = 406

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 114/380 (30%), Gaps = 58/380 (15%)

Query: 14  ERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +G   + FR         GRR        +T   A    +  S    E      + 
Sbjct: 6   YKRPNG---WEFRHDIDPDPLTGRRRTTSRGGFATKTEA-NREMRKSILAHEEGRRVDRS 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T+   + E+  +    SL  ++   + +Y D  I    G+   +++T   I       
Sbjct: 62  RRTVTEFLDEWIVAVRP-SLRPSTWSKYRTYCDSYIKPVIGNTALQELTPVRINLLYAHL 120

Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +P S       +    + AVR  Y+  NP   VERPK       
Sbjct: 121 LTSGRRHQRTNQGAGLSPGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPT 180

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------- 216
            WTKE ++ F      G +    +   + +GLR                           
Sbjct: 181 VWTKEQLRTFVDH-VRGDRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIV 239

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMN 265
           + N     + +       + L     K L +     E             F   D   ++
Sbjct: 240 VDNKAVDGEHKTDSAYRPLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIH 299

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
               + WF+A A  AG+     H VR   AT +  +G     +    G  +V      Y+
Sbjct: 300 PDTVTDWFQAHAKSAGLPVIRLHDVRHSYATAALKSGVHPKIVSERLGHASVAFTLAYYS 359

Query: 324 KGADRIRLGIKNSRRISSVV 343
                  +  + +  I+ ++
Sbjct: 360 HVIPG--MDAEAAGAIAGLI 377


>gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK160]
 gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK1087]
          Length = 328

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
             L+  +  +      +  S   ++   + ++        R +TT  +R       + RK
Sbjct: 51  SKLLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTAIRDLTTGDLRTYLAHYQQERK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K        ++ E ++  +    
Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +  R   + +           K  +   V         L 
Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++          +    ++         +    KA +NK   H  R+  AT + D
Sbjct: 229 NYLDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312


>gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss]
 gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum
           MopnTet14]
          Length = 299

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%)

Query: 73  WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
            LI ++    S     +A  S  ++       +++        I  + +          K
Sbjct: 8   QLIEQFTIFLSVD-RGIAPLSVQAYCQDILLFLQRVPIETTDMINQESVFLFVEKCHQAK 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            + ++  + L +++V F +    + +   P +  E PK         + E++    +   
Sbjct: 67  ESETTLARRLIALKVFFHFLKDAKLIHQQPFI--EHPKVWKRLPSILSTEEVNSLLNQPL 124

Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                     ++          +G+R S+ C   +  + ++   +  +   T +      
Sbjct: 125 NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIK 184

Query: 240 GFM---KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHG 288
                   L M     +    + +   ++        S  +K     A +    + S H 
Sbjct: 185 ARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHS 244

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R   AT   +  A    +    G   +   E YT  A  
Sbjct: 245 LRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASE 284


>gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYRTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa]
          Length = 323

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
 gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594]
          Length = 264

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 16/230 (6%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +T +   +   +     +SA + L++++    +A  +   A      +  P+ K    
Sbjct: 17  NAVTLRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEATAPRLRGPRIKKGLP 76

Query: 172 RPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           RP T ++                 G + R     L  +GLR +++     + +       
Sbjct: 77  RPVTPDEAINLADTVDASAADDWIGKRDRAVLLLLYGAGLRIAEALSLTGKAVPLGESLQ 136

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKA 277
            T K G    V +       +A                        ++            
Sbjct: 137 VTGKGGKQRVVPILPLIGDAVADYAKTCPWPIEPKGPLFRGAKGGPLSQGMIQKTTARAR 196

Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              G+    + H +R   AT    AGA    L    G  ++   + YTK 
Sbjct: 197 RALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKV 246


>gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 328

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 94/307 (30%), Gaps = 44/307 (14%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT 116
            +   ++   L  + + +        +LA N+  ++     +        G     ++  
Sbjct: 2   ADRAGEERDPLARVCAAFLDHLSAERALADNTLAAYRRDLRRYRAYLAGHGVLSPERVGP 61

Query: 117 KHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             +   + + +           +SA + L ++R L ++A R+ +   +P   V  P    
Sbjct: 62  AQVGDFLRALREGDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPM 121

Query: 169 EGIRPWTKEDMQQFK-------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
              +      +++                      + R   E L  +G R S++    V 
Sbjct: 122 RLPKAVPLASVERLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVD 181

Query: 216 HLQNNIF-------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FI 257
            + + +             K G    V L     + L+   +                F+
Sbjct: 182 DVADAVEGDDAVGLVRFRGKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFL 241

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N    ++          A A +AGV   S H +R   AT   D GA    +    G  +V
Sbjct: 242 NARGGRLTRQGGWGILAAVAERAGVEGVSPHTLRHSFATHLLDGGADIRVVQELLGHSSV 301

Query: 317 DQAETYT 323
              + YT
Sbjct: 302 TTTQIYT 308


>gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg]
 gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD
 gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg]
          Length = 301

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%)

Query: 73  WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127
            LI ++    S     +A  S  ++       +++        I  + +          K
Sbjct: 10  QLIEQFTIFLSVD-RGIAPLSVQAYCQDILLFLQRVPIETTDMINQESVFLFVEKCHQAK 68

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186
            + ++  + L +++V F +    + +   P +  E PK         + E++    +   
Sbjct: 69  ESETTLARRLIALKVFFHFLKDAKLIHQQPFI--EHPKVWKRLPSILSTEEVNSLLNQPL 126

Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                     ++          +G+R S+ C   +  + ++   +  +   T +      
Sbjct: 127 NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIK 186

Query: 240 GFM---KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHG 288
                   L M     +    + +   ++        S  +K     A +    + S H 
Sbjct: 187 ARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHS 246

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +R   AT   +  A    +    G   +   E YT  A  
Sbjct: 247 LRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASE 286


>gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 390

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 101/387 (26%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R          +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GEYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++ K      + V+S  + E      I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWLKQY-ANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222
                               F  L Y+G+R  +        +                  
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQYQVLTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMESVSKD 388


>gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 335

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 82/332 (24%), Gaps = 38/332 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G  I        +  R+     +          T   P        ++   TLK 
Sbjct: 4   RKNPTGGWICELYPNGAKGKRIRKKFATKGEALAFEQYTVQNP----WQEEKEDRRTLKE 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+  +  SAH  +L    +     +        G+   R    +      E R       
Sbjct: 60  LVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                + +P +    L   R +F    R         L   RP R  E    W  +D   
Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTQDQIS 176

Query: 182 FK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                    E           L +G R S++       L     +    K     TV + 
Sbjct: 177 QLLGECKRHEHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294
               + L     G+                    F++   + G+        H +R   A
Sbjct: 237 KELYETLPDDKKGRLFSDCYG------------AFRSALERTGIELPPGQLTHVLRHTFA 284

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     L    G   +     Y   A
Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae]
 gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae]
          Length = 339

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 81/301 (26%), Gaps = 48/301 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+ + R        ++ +  ++ S+  + I  +G  D  ++    + + +       + +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYVSWIRRFILANGKRDPAQMGQAEVEAFLTRLATDGRVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------------EGIRPW 174
             +  Q L ++  L++  +R E   +   +  +RP+R                 EG    
Sbjct: 78  AGTQNQALAALLFLYREVLRIELPWMENLVRAKRPRRIPAVLWREEVARLLAVLEGPCWL 137

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                        E  + R+         +   D      + +       K  +      
Sbjct: 138 MASLPYGSGMRMMECLRLRIMDVDAARGEMLVRDGKGGKDRRVPLPHSLRKALQRKRERA 197

Query: 235 VELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQ---------------- 268
           + +    +            LA      +                               
Sbjct: 198 LLVHVADLAAGAGRVFLPHALARKYPNADVEPGWQYLFPSARRSRDPRSGRPGRHHVSEE 257

Query: 269 -FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 ++   +AG+    + H +R   AT   +AG     +    G K V   + YT  
Sbjct: 258 ILQRAVQSARQQAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317

Query: 326 A 326
            
Sbjct: 318 L 318


>gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
 gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016]
 gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112]
 gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3]
 gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri
           MM4-1A]
          Length = 324

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 80/262 (30%), Gaps = 12/262 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
            L+++Y  S      +  S   +++   + +   G      +T     ++ +  E    +
Sbjct: 48  QLLTKYFASKRAEGCSEKSLKYYKTTITKALASIGKNAKEIVTDELRNYLTNYQEVHNSS 107

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + K  T     +T E++++      + 
Sbjct: 108 KVTIDNIRRILSSFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEK-LRDNCKD 166

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            +     +FL  +G+R  +        +       I   K                L   
Sbjct: 167 IRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERIAYFDARAKLHLQKY 226

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
              +                ++         K    + G+++   H  R+  AT + D G
Sbjct: 227 LYTRTDSNEALFVSLYRKHTRLTIGGVESRLKHLGKRLGISRVYPHKFRRTLATTAIDKG 286

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G K +D    Y 
Sbjct: 287 MPIEQLQRLLGHKRIDTTLHYA 308


>gi|326790575|ref|YP_004308396.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541339|gb|ADZ83198.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 373

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 107/356 (30%), Gaps = 42/356 (11%)

Query: 16  TRHG----KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + G    K      +   +     + ++     A    +               +    
Sbjct: 11  DKSGRKPAKWRIRVTRNGHKYETTFFGNKKEAEQAEKDFIYQID----KGMMGSSENMLF 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           K L  + ++      L  NSRI++ + + + I     D     I    I+        ++
Sbjct: 67  KDLYKKVQREYIDK-LKANSRITYRNSYDNHIGPAFDDMKLCDIKPIDIQEFATDLLEEY 125

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++    ++ +      A +   ++ +P   +E  + +++ +      D  Q      E
Sbjct: 126 KYNTVRVIMSKLNTCLSLAEKWGIISNSPYKHIELGQAESKSLDELMSLDNIQTLIKLYE 185

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
             +    R AF   +  GLR S+     ++ +  N+ +I   K                 
Sbjct: 186 NDKWPLHRAAFFLAVGCGLRNSEIRALTLKDIDFNLNTITVDKQIGLYDDEKDLFTSTKT 245

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV 282
             +   +  P+  MK +           IN      +  + +N+   S   +       +
Sbjct: 246 SGSKRKIYAPEFVMKAIKEHIDSMPAIPINALIFTISKNKPINSHTLSNHLREVLIANDL 305

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR--IRLGIK 334
                H +R   AT+  +       +    G K++      YT   +    R+  +
Sbjct: 306 PLIRFHDLRHIHATLMINNNMDIATVSKRLGHKSIATTLKFYTHTVEERDKRVATE 361


>gi|323527812|ref|YP_004229965.1| integrase family protein [Burkholderia sp. CCGE1001]
 gi|323384814|gb|ADX56905.1| integrase family protein [Burkholderia sp. CCGE1001]
          Length = 358

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 90/334 (26%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R+R     Y      G  +       S    A                   K   T   
Sbjct: 5   KRSRSPNWYYRLTPPGGGSVVQGSTGTSNKEQAQELYDRLKVELWNQARLGVKPRYTWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
            +  Y        L+  S  + +++   + R         I    + +   +++      
Sbjct: 65  AVIRYVTDRE--GLS--SLETSKTHLRWLDRHLSGVALAGIDRDRVDAIALAKRKETRVV 120

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        +  +  + +  +R +   AV   ++   P     +   K        
Sbjct: 121 RTKRGIVDTGQTVSLGTVRRVIGVLRAVLNAAVEWGWLDRAPVAKRSKVVPKRVRWLTPA 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL+ S           +   +   +    
Sbjct: 181 EAERLLPELPGHLAEMARFSLETGLRRSNVTGLQWSQVDLVRRIAWIHPDQAKAKRAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++        + +A     +    +   K +      +  ++    +AG+ N   H +R
Sbjct: 241 PLSETAVAVLRRQIAKKRAPEYVDSVFVYKGRPVYQTVTAAWRKALKRAGICNFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G   H L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLHVLKELGGWETLEMVQRYAH 334


>gi|253699016|ref|YP_003020205.1| integrase family protein [Geobacter sp. M21]
 gi|251773866|gb|ACT16447.1| integrase family protein [Geobacter sp. M21]
          Length = 439

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 107/385 (27%), Gaps = 61/385 (15%)

Query: 14  ERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS------- 63
                G+ ++Y+     G  R + L          A  +        +   +        
Sbjct: 33  RVVPSGEKLWYYIYTFQGKKRYMWLGSYPAVPLAAAREACEVARAKVKAGTDPLAQKDAE 92

Query: 64  --PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R+K  T+  L +EY +  H      + +   +     ++ + G    R IT + +  
Sbjct: 93  LEERRKAPTVADLCAEYLE-RHAKQFKRSWQKDEQMIKRDVLPEWGKRKARDITKRDVVL 151

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---K 176
            +E       P  A      +R +F +AV ++ +   PC  V+ P  K    R  +    
Sbjct: 152 LLEKIMDRGAPIQANTTFALIRKMFNFAVERDVLEHTPCHGVKPPAPKVARDRVLSESET 211

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234
                        ++ R A + +L +  R  +        ++   + +     K      
Sbjct: 212 RSFWHNLDACCMSNETRRALKLVLVTAQRPGEVIGMHTDEIKGEWWILPGDRVKNKKSHR 271

Query: 235 VELPDGFMKLL----------------AMTPIGKETFFINNDKQKMNATQ---------- 268
           V L     ++L                                Q +              
Sbjct: 272 VYLSTLAREILAEAVAENKEKLGIPGDQEYRGFMFPSPQLAKVQPIAPQALIVAVGRALA 331

Query: 269 ---FSIWFKAKATKAGVN----------KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                  FK    + G             + H +R+ +AT  A++G     + A      
Sbjct: 332 SPVLDPNFKRVLDREGKPVTVNRLEVAHFTPHDLRRTAATFMAESGEMDEVIDAVLNHAK 391

Query: 316 VDQAETYT--KGADRIRLGIKNSRR 338
                 Y   K   + +  +++  R
Sbjct: 392 QGVIRVYNQFKYDAQKQAALESWSR 416


>gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197]
 gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197]
          Length = 351

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 20/327 (6%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLISEY 78
             Y     G+   L          A  + +   +         R       TL   +  Y
Sbjct: 18  YCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRIKGADSITLHAWLDRY 77

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136
                   +   + + + S    I RK  D     I+TK + + + +   +   +SA   
Sbjct: 78  ETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLI 137

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +        RLA 
Sbjct: 138 RSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAM 197

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------LAM 247
           +  + +G R  D CR     + +N   I+  KTG  + + L      L            
Sbjct: 198 DLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLVDTLQKCR 257

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGA 302
                ET   +     ++    S +F      +G+       + H +R  SA        
Sbjct: 258 EASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSA-RLYRNQI 316

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
                    G K+   A  Y     R 
Sbjct: 317 GDKFAQRLLGHKSDSMAARYRDSRGRE 343


>gi|317508618|ref|ZP_07966276.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316253085|gb|EFV12497.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 444

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/384 (12%), Positives = 96/384 (25%), Gaps = 76/384 (19%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++TR G   Y    G     G+R +           A  +        R+ ++  R    
Sbjct: 6   KKTRGGTWYYVVDLGPDPTSGKRRQERKRGFRIKDDAEDALTERLAEIRQGVHVDRSV-- 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   + ++  +     L   +   +  + D  ++   G    R +   HI   +     
Sbjct: 64  TVAAYLRDWIDAKEAAGLRAKTVKGYRQHIDTHLVPHLGHIKLRDLRATHIEKMLREIAK 123

Query: 129 ----------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                 + SS  +   ++      A R+  ++ N     +RP  
Sbjct: 124 PPKQPAPNEKIATGKHRKLKPLSASSIRRVHATLSSALGAAKRKRLISFNAAADSDRPAA 183

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----- 221
               +RPW   D+  F    +   +    +E    +GLR  + C      L         
Sbjct: 184 TRPKVRPWEPHDLGLFLDH-AASERFGPMYEVAALTGLRRGELCGMRWDDLDFERSVFVV 242

Query: 222 -------------FSIKTQKTGTIITVEL--------------------------PDGFM 242
                              +                                    D   
Sbjct: 243 RQQLVVVSSAGIACPYCQGQHKQFRFSTPKTASGEARIVDLDAATVGVLMAQRLAQDAER 302

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           +      +     F   D         +  F       G+ +   H +R   A++   AG
Sbjct: 303 EEWGDLYVDHGLVFAREDGNPTPPDDVTERFNKLTDDLGLRRIRLHDLRHGQASLMLAAG 362

Query: 302 ATAHELMATYGWKTVD-QAETYTK 324
                +    G       ++TY+ 
Sbjct: 363 VEMAVVSKRLGHSRHAFTSDTYSH 386


>gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa]
          Length = 337

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 83/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +   + ++    IR  G      + +  + + +    H    S
Sbjct: 16  VLDQLRERIRYLHYSLRTGQGYVNWVCAFIRFHGVGHPATLGSSEVEAFLFWLAHERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++           + 
Sbjct: 76  VSTHCQALAALLFFYGKVLCTDLPWLQEIGRPRPLRRLPVVLTPDEVVCILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638]
 gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638]
          Length = 341

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 93/345 (26%), Gaps = 34/345 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R   GK +   Y     GRRIR  +  +   +      +  +        S       L
Sbjct: 4   RRLASGKWLCECYPYGASGRRIRRQFATKGEALSHERRLMVHAD------VSVVNSSKRL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             L+  +          + +    ++    +  + GD    +          + R     
Sbjct: 58  SELVDIWY---EMHGKTLTTGEERQAKLKAVCERMGDPLVSEFDRNMFAVYRKRRLSGEW 114

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     ++  +  + +  +F    R   +   NP   V   K     +    ++++
Sbjct: 115 SANKKKPTKEATVNREQSYLHAVFSELKRLGAWAGENPLEGVRHFKVSESELSFLYEDEI 174

Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++  S   E     L       L +G R S++ +     +     +    K+    TV +
Sbjct: 175 ERLLSVCDESGNADLGSVVRVCLATGARWSEAEKLTQSQVLPGRITFTNTKSKKNRTVPI 234

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
            D   KLL        +              F+   K    +    +  H +R   A+  
Sbjct: 235 SDNIQKLLPKRRGRLFSNC---------YEAFTWALKKAKIELPEGQRTHVLRHTFASHF 285

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              G     L    G  T+     Y   A            +  +
Sbjct: 286 MMNGGNILVLQQILGHSTILMTMRYAHFAPDHLEAAVTLNPLDRI 330


>gi|167813643|ref|ZP_02445323.1| prophage integrase [Burkholderia pseudomallei 91]
 gi|254188210|ref|ZP_04894722.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935890|gb|EDO91560.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 376

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R ++G   ++     G RIR      S    A   A   ++          +   T   
Sbjct: 5   KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127
            +  + K          ++         +  +    + R I  + I++ +E++       
Sbjct: 63  AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+    
Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
               +  R    F L +GLR S+        +              K G +I+V L +  
Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       + +        +    ++  ++    +AG+     H +R   A+    A
Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW +      Y  
Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317


>gi|146310657|ref|YP_001175731.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317533|gb|ABP59680.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 387

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 114/380 (30%), Gaps = 58/380 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G    +F    G+RIR      +          L     + + I        T + 
Sbjct: 4   TLRGGVWHCHFVTPSGQRIRRSLGTGDKKQAQELHDKLKSEAWRVDKI--GELATRTFEE 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
               + +          S     +  +  +R     D   IT + +   V    +     
Sbjct: 62  CCIRWIREKDHK----RSLDDDRTKIEYFLRHFSGRDVSTITAEQVHDAVSKMVNRKHIQ 117

Query: 131 --------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                                     ++  Q L+ MR L K A       I    +++  
Sbjct: 118 VWESRRDAAIRRGKEPPPYGDKPVSQATKSQHLSFMRSLLKAAADDWG-WIKSAPAIKTR 176

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           K  ++ IR  T+++ ++      E  +P + F   L +GLR S+      Q +       
Sbjct: 177 KPVSKRIRWLTRDEAERLIECMPESIKPVVIFA--LATGLRRSNIVDLEWQQVDMQRKVA 234

Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269
                       I V L D   ++L       + +   + K                   
Sbjct: 235 WVNPENAKAGKAIGVALNDTACRVLRNQIGKSKVWVFAHTKAATRPDGTLTPAVRKMRID 294

Query: 270 -SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  +K    KAG+ +   H +R   A+    +G     L    GW++++    Y   A 
Sbjct: 295 DNTAWKIGLEKAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAP 354

Query: 328 RIRLGIKNSRRISSVVDSDD 347
                 +++R+I ++  + D
Sbjct: 355 NH--LTEHARKIDAIFGNHD 372


>gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01]
 gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01]
          Length = 304

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 92/275 (33%), Gaps = 20/275 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              +      +        R   +  +     + +R+ +   +  P     FL ++R  +
Sbjct: 33  RGYSPRGVRRYLQDLALWFRFLQEEGFTP-GPEAVRALLLKERWAPRRVQGFLAALRSYY 91

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE---FLL 200
           ++  + +     +P   + RPK           E++++F        + RL      FL 
Sbjct: 92  RYLSQVKGEAVSDPTEGIGRPKAGRRLPLHPAPEELRRFLEALEAEKEARLLSRLARFLY 151

Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250
            +GLR S++     +++       +      K      V L     ++L           
Sbjct: 152 GTGLRISEALSLKGRNVILEGSVPVAIRVVGKGNKERLVPLSRTAREVLLELGPPQGNVS 211

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                   +     +A      F+  A +AG++    + H +R   AT+  + G     +
Sbjct: 212 IFTFTHGRHRGSVPSARYVEARFREAALRAGLDPRRFTPHKLRHAYATLLVENGVELDAV 271

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G +++   + Y   A R RL  + + R+  +
Sbjct: 272 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 304


>gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ +  +   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLHERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|331091853|ref|ZP_08340685.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402752|gb|EGG82319.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 350

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 105/361 (29%), Gaps = 39/361 (10%)

Query: 12  TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            K++T+ G     FR     G++ +       T   A              +        
Sbjct: 4   YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                I  Y +      L  NS  + +      I+   G     +IT   I       + 
Sbjct: 61  ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNIIQE 115

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
              S          +  LF  A +   +  NPC  V++  K     +  WTK +  +F +
Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228
               GS+  L FE L ++G+R  +                        ++        + 
Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKT 235

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             ++ T+++P+   + +         F  +     + A       K      GV     H
Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVH 295

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R          G     +    G K +     TY        L     ++++ ++D+ 
Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349

Query: 347 D 347
            
Sbjct: 350 R 350


>gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
 gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2]
          Length = 379

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 122/363 (33%), Gaps = 45/363 (12%)

Query: 12  TKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKP 68
            + +T+ G K ++    G   +                 A+  +   ++ I+  +  +  
Sbjct: 5   QQYKTKTGYKWLFKMGVGIDPKTGNRKTTTRRGFKTKKEAVAAAAEFQKEIDNNALARND 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T + +  E+    H  ++  ++R    S F   I+   G    + IT  + +  +    
Sbjct: 65  ITFEDVFKEWWD-VHSKTIKRSTRYRKLSNFKKHILPHFGKLKIKDITRAYCQKVINLIA 123

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQ 180
               S         ++FK+A+R EY+  NP   V  PK       ++ E    W K +++
Sbjct: 124 QDIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKAEIK 183

Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIF 222
            F          Q  + F  L+++G+R  +      + +                     
Sbjct: 184 TFLEKAHSQLAPQDYVMFYVLIFTGMRKGELLALEWKDVDLKEKTINIKQTMFFENGEEV 243

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQF 269
              T+K  +   + + D   ++L      ++                I  D + +     
Sbjct: 244 IQTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYP 303

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           +        K  +++ + HG R   A+I  +AGA+  E+ A  G K +      YT    
Sbjct: 304 NDLLNRMIAKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTK 363

Query: 328 RIR 330
             +
Sbjct: 364 TAK 366


>gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
 gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753]
          Length = 393

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/376 (13%), Positives = 106/376 (28%), Gaps = 52/376 (13%)

Query: 14  ERTRHGKI--IYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++   G+     Y     G+R     Y      +      +     K   I S R    +
Sbjct: 7   KKRPDGRYAMQIYLGTVDGKRKYKTVYGGTPKEVQKKADEVRILMGKGINITSMRD---S 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                 ++ KS     ++V+   S+++Y    +         +I    I+S +   K   
Sbjct: 64  FGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLAK 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++      +   +F+ A+    +  NP   V  PK   E  R        Q +       
Sbjct: 124 NTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIAPEFHR--DALTDDQQRWIRETPH 181

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV----------------QHLQNNIFSIKTQKTGTIIT 234
           + + A   +LYSGLR  ++                     + +        T+    I  
Sbjct: 182 RAQRAAMLMLYSGLRRGEATALTWADVDLNTGTISVTKSAEMINGKPHIKTTKTETGIRI 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK------ 284
           V +P   +  L      +    ++       + M    +   + +      V        
Sbjct: 242 VRIPQVLIDFLRNEKDSEFPLCMHVIHSARGKMMTNQAWRCMWDSYLLDLNVKYGYGGKI 301

Query: 285 ---------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                          + H +R   A++   AG          G   +      YT     
Sbjct: 302 NKFDPHGVVMRIPAFTPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHL--D 359

Query: 329 IRLGIKNSRRISSVVD 344
                K+  +++  ++
Sbjct: 360 KLYKEKHMDKLNEYLN 375


>gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 291

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 85/272 (31%), Gaps = 27/272 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129
           L            L+  ++ ++     Q+ +   +    +++   +R         ++ +
Sbjct: 5   LRQRMIDDMQIRGLSAQTQSAYVQAVRQLAQYF-NTPPDRLSDDQLRRYFLYLRTEKQVS 63

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+    L ++R L++  +++ +    P L   RP +        ++++++         
Sbjct: 64  ASTITVTLCAIRFLYQHTLQRSW----PLLDALRPPKAQPLPVVLSRDEVRAIL-HQVRT 118

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIIT 234
            + R+    +   GLR  +  R  V ++ +    +  Q                   +  
Sbjct: 119 PRHRVCLSIIYACGLRLMEGVRLQVCNIDSARLMLHIQHGKGNKDRYIPLPPPALAMLRA 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                   + L  +    +   I      M+       F      +G+ K  + H +R  
Sbjct: 179 HWRSHQHPRWLFPSHWVDKALPIAARSVSMSRDGVQRAFLLACQASGMRKHATVHTLRHS 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   +AG     +    G  +      YT 
Sbjct: 239 WATHLLEAGVNLRIIQGWLGHTSPTTTAHYTH 270


>gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 93/319 (29%), Gaps = 18/319 (5%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     GRRIR    +       Y   +  +   +E++  P      L
Sbjct: 4   KKLDDGRYEVDVRPQGSEGRRIR-RKFNTKGEAQIYERHVLVNYHNKEWLEKP-ADRRKL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             L+  +                  S       + G     +IT K I        +   
Sbjct: 62  TDLLELWWLYHGKHHNRGLIEKGRLSAIMIKFAEIGVTRADQITKKAITDYRVKMMNEGL 121

Query: 129 TPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            P+S  +       +F K     EY + +P   V++ K     +   + E++ Q      
Sbjct: 122 KPASVNRHQAIFSGMFTKLIDANEYHSEHPFRGVKKLKEAEPEMAFLSTEEITQLLD--M 179

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                R A    L +G R S+      +H+ N + +    K G   T+         L+ 
Sbjct: 180 LEGDNRNAVLLCLATGGRWSEVADLKAEHIINCMLTFMKTKNGRRRTIP--------LSE 231

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             +              N        +A        ++ H +R   AT     G     L
Sbjct: 232 GLVKMVKKRSTGKLFTPNYDTVRNTLRAMKPDLPAGQAVHVLRHTFATHFMMNGGNIITL 291

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  TV Q   Y   A
Sbjct: 292 QRILGHSTVQQTMVYAHFA 310


>gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
 gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella
           ictaluri 93-146]
          Length = 336

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 103/334 (30%), Gaps = 35/334 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V       G+  Y F   +G  IRL     +       +A      +R        
Sbjct: 13  MPPRVYM-----GRSAYEFHPINGGNIRLCDKTATQ--AQVWAAWEALINERPD------ 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             TTL  L+  + KSA +  LAV ++  +  Y  +I+   G      I  +H+R  ++ R
Sbjct: 60  -TTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEHVRRYMDKR 118

Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                + A +  + M  +++WA  + YV  NP   V + K              +    +
Sbjct: 119 GLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGVRQFKEPGRDRY---ITHQEYLALY 175

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R+A E       R  D               IK  KT             + +
Sbjct: 176 GVTSDVVRVAMELAYLCCARQKDVLNMMKSQFLPEGILIKQSKTAVGQIKAWSPRLREAI 235

Query: 246 A-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRK 291
                    +              K +   F+  ++     A         N + H ++ 
Sbjct: 236 KLASTLPLDSGRSTLYVIHQRSGDKYSRHGFNSRWRQAKKAAKKRYPELDFNFTFHDLKA 295

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +         +E  A  G K V+Q   Y + 
Sbjct: 296 KGISDLK---GNIYEKQAISGHKNVEQTARYNRK 326


>gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 100/369 (27%), Gaps = 49/369 (13%)

Query: 14  ERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G+    YY     G + +    +  ++       LT          +P++   T+
Sbjct: 9   RKRADGRWEGRYYIVDAAGSK-KCKSVYGHSYKEVTERLLTAKAASLNQTAAPKQSAITV 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K +  ++ +S    S   ++   + + +   I    G+    ++    I   +       
Sbjct: 68  KAVAEKWLESI-ASSRKCSTIQKYSTIYNKYIKPNWGESVIDELNQNEILKEL-PETAGE 125

Query: 131 SSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           S     L     +  +         + ++                  T +  +  +   +
Sbjct: 126 SVTKSILCIFNSILAYGAATYGTGEIHLSYRAKRSSVTSSNNINTINTIDQQKLTEYLLT 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232
           E    +L     L+ GLR  + C    + +     ++   +T                  
Sbjct: 186 ELDIYKLGILLCLFMGLRLGEICALKWEDIDMISRTLHVNRTVQRLPVDTVHTSDSSQNN 245

Query: 233 --------------------ITVELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQFS 270
                                 + +PD     L+                 Q M+   + 
Sbjct: 246 HTATKKTSLYIDSPKTSNSLREIPIPDFIYDKLSDYYNTSMKGDSYFLKKNQPMDPRTYQ 305

Query: 271 IWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GAD 327
             F     +AG+  +  H +R   AT    +GA A  +    G   V+     Y     +
Sbjct: 306 NRFHIYIKEAGIGNTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLE 365

Query: 328 RIRLGIKNS 336
             R  I + 
Sbjct: 366 TKRSAINSI 374


>gi|223044340|ref|ZP_03614375.1| integrase [Staphylococcus capitis SK14]
 gi|222442308|gb|EEE48418.1| integrase [Staphylococcus capitis SK14]
          Length = 353

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 97/354 (27%), Gaps = 27/354 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +  +GK  Y F     R  +  +  +     A   A                  T+   
Sbjct: 4   RKQPNGKWYYDFGYEGKRYKKKGFKTKREATEAESIARNKLMK-----GFIINNKTSFID 58

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             +++        +   S  +F++  +Q  +     + + I    +   +  +      A
Sbjct: 59  YYNDWIVVNKEDVVTEKSYATFKNAINQFKKFLEKENLKDIIMSDLNMTIYRKFIKWYGA 118

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----------KTEGIRPWTKEDMQQFK 183
                ++R +     +    AI   L  + P            + E  +  + ++  + K
Sbjct: 119 NHSTETVRKIHNCLKQSIDDAIQEGLIHKDPTYKVVTKGTIPAQREEEKFMSIDNFIKLK 178

Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSD-------SCRAGVQHLQNNIFSIKTQKTGTIITV 235
            + S       +    L+ +G R  +               +       +T      +  
Sbjct: 179 QYVSNTPIQSYVFIYILIITGGRFGEVQRLCTTDLNYRECTIHLPGTKTETSDRTVDVPH 238

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                  K LA  P+   T   N     +     S   +    +  +   + H +R    
Sbjct: 239 TDMKILQKTLAQMPVNLSTRLFNTGVSLITHNAVSKVLQKFCLENKIGKYTLHSIRHTHC 298

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSVVDS 345
           +       + + +    G K +      Y+   D    +  IK  + +  +  +
Sbjct: 299 SYLLHNDISIYYISKRLGHKNIKTTMDVYSHLLDEIEQKEKIKAVKLLEDMTGT 352


>gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWPQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22]
 gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22]
          Length = 407

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L   +R+            +A  +   +E+                D    +++ + I
Sbjct: 109 RTLFEVFREHNDKCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFI 168

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  K       ++A ++L + + + + A+ + ++  +P L +              
Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLE 227

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +   ++  + G  
Sbjct: 228 DSEIQKLISKEIDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQ 287

Query: 233 ITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T  + +  +     K+L      +           +   + + + K  A   G+ K+  
Sbjct: 288 KTKIMCNIPLMEIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLT 347

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H  R   AT +   G +   +    G   V     Y +  DR
Sbjct: 348 THVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14]
          Length = 333

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR       +   +Y   L  S    E+ +    +   L
Sbjct: 4   RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAMLPQKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 418

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 18/309 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102
             Y +A   +    E      +  +         +++ H  S + +  +++       +I
Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151
             K     + +I  K + S  +   + P           ++A  + +  +   K A    
Sbjct: 164 FAKGDTILFSQIDLKMVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+ I+    V+  + +       T E++ +      +    R A  F   +G+R  D  +
Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                ++      +   T             +         +   +       + +  + 
Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINR 342

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     AG+ K  + H  R   AT+    G   + +    G   V   + Y K  D  
Sbjct: 343 PVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402

Query: 330 RL-GIKNSR 337
           +    +  +
Sbjct: 403 KEKATETIK 411


>gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
 gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855]
          Length = 229

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 6/227 (2%)

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               ++   ++A   LT ++ +   A     +  N    + R K      +  TKE++ Q
Sbjct: 1   MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 60

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +    R A  F   +GLR SD  R   +++             T          
Sbjct: 61  LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITK--KTSTAAI 118

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           + +                 + +  +  +++ K     +G+ K  + H  R   AT+   
Sbjct: 119 LPISEEALQLCGERGTGQVFKNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFATLQLA 178

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            G   + +        +   + Y    D ++     + RIS  + + 
Sbjct: 179 EGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERISLKMPTK 223


>gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 423

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 99/360 (27%), Gaps = 41/360 (11%)

Query: 24  YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y   G  RR+ +                    A+             R  P  +K +I  
Sbjct: 49  YRHAGRQRRMNIGRWPEWSVTAARERAKELRRAIDEGHDPLAAKEEFRGAPR-VKDMIDR 107

Query: 78  YRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE------------ 124
           Y        LA N+     S   +++    G+    +IT   +   ++            
Sbjct: 108 YIAEH-LPKLAKNNAGDQTSMLKKMVEPAWGNKLVTEITKSDVAKFLDFVAEGRPRPSKE 166

Query: 125 ----------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRP 173
                       K TP  A +    +R +F  AV  E+ A NP      R +   E    
Sbjct: 167 KPNNRARKLQGHKPTPIRANRTGEVLRKMFTLAVEWEWRADNPAQGFHRRIEEARERFLG 226

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
             +          +E  +        + +G R  +   A  +    + +   K   T   
Sbjct: 227 PDELARIAAVLDSAEDQRAASIIRICMLTGARVGEVRTARFEQFNLDYVVWSKPASTTKQ 286

Query: 233 ITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
             +       +++A+    +        +    +       +   ++      A +    
Sbjct: 287 RKIHRVPISQEVVAIVRQRQLVVPKGNPWLFPGETVGQPVREIRRFWAKVQKDADLPDLH 346

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344
            H +R   A++    GA+   +    G   +   + Y    D  +R G+     +     
Sbjct: 347 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDTVASLLRPRP 406


>gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
 gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia
           risticii str. Illinois]
          Length = 307

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 29/276 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESR 126
            + +  S      + N+ +++       +     F            I  K +R+ + SR
Sbjct: 16  WTRWLGSVKC--FSSNTLVAYSRDTIAFLDFLSTFRGESVNCASLEGIDDKDLRAWLASR 73

Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +    +  +  + L+S++  F++  +   +     L V    +     R  T +++    
Sbjct: 74  RKNSISFRTNARALSSVKSFFRYLAKHNGIINEDVLGVVLRFKPNTLPRSLTFKEIIELI 133

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
               F        +       L  SGLR S++    V  L N        K      + L
Sbjct: 134 EKFSFLKTGWIVKRNIALCYLLYGSGLRISEALSLTVADLANTEIK-IMGKGSRERMIRL 192

Query: 238 PDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
                  LA                F++ +  K+  T  +  F +   +  +  + + H 
Sbjct: 193 LPIVRVALADYIASCPFQLDGGGFLFLDRNGNKLCRTAVAGAFLSIRRRFNLSNHITPHA 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   AT     G    ++    G  ++     YTK
Sbjct: 253 LRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288


>gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
 gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L++ +  +      +  +   + +  ++++          ITT  IR       E  +
Sbjct: 53  EHLLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+A +P   + + K  +      + E ++Q      
Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     +FL  +G+R  +  +   + +  +               V         L 
Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNARTKLHLQ 230

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+           ++   ++  +   I  +       + K   H  R+  AT++ D
Sbjct: 231 QYLNGRTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|260663316|ref|ZP_05864207.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260552168|gb|EEX25220.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 373

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 97/376 (25%), Gaps = 40/376 (10%)

Query: 1   MTPSLRL-PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M   ++  P ++ +       + +  R   G++ +       T   A  +         +
Sbjct: 1   MAQIIKKGPSYMVR-------VTW--RDADGKQHKKSKSGFKTKAAARKA--GAEMESSK 49

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y                 + ++      +  ++  +    + +    G      I     
Sbjct: 50  YHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATY 109

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  +    + H+ ++A +    +RV  K AV    +  +          KT   +     
Sbjct: 110 QRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLN 169

Query: 178 DMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
             +  +         S G   R      +Y+G+R S+        L     +I+  K+  
Sbjct: 170 MEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLNLPFKTIEISKSWD 229

Query: 231 -------------TIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAK 276
                        +   + +    +  L           F   D     ++  +   +  
Sbjct: 230 FKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLF 289

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRL 331
             K  ++K     H +R          G   + +    G   +      Y    D     
Sbjct: 290 LDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKAR 349

Query: 332 GIKNSRRISSVVDSDD 347
                 R    +   D
Sbjct: 350 SDDQIERALVSLGVPD 365


>gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 356

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 97/323 (30%), Gaps = 14/323 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---YINSPRKKPTTLK 72
            ++G     FR       R  Y                    +       +PR+  T L 
Sbjct: 6   KKNGTWYVAFRVAGEPHPRREYFGVGPHAHQQALIRDAEIKLQRVSGAAPAPRRGSTYLD 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
            +   Y         +    I    + +  I+          +    I + V+ +    T
Sbjct: 66  AVAQAYIIDRKTAGASRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIALVDKKWGNRT 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  ++L  ++ LF++ V   +   NP     + K     +R  T E ++   +  +  
Sbjct: 126 LATRQRYLGYLKALFRFGVEHGFTKNNPLSKWRKTKEPKRNLR-LTLEGLELILAHAAPH 184

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA 246
            +  L  E+ + +    ++        +     +I    T+      T+ +   F   L 
Sbjct: 185 LRWALEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPEFRDRLQ 244

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                +   +I   K K      +   +    +AG+      + +R   AT+    G+  
Sbjct: 245 KVMREQGGEYIITYKGKPVLR-MNTALRGACRRAGLPYHVRMYDIRHLFATVMLANGSDL 303

Query: 305 HELMATYGWKTVDQAE-TYTKGA 326
             +    G  T+   +  Y    
Sbjct: 304 AAVSKLLGHSTIATTQAHYYHVL 326


>gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 96/317 (30%), Gaps = 32/317 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107
           L            P   P +L  L+  +       + + ++      +         + G
Sbjct: 11  LLTVDEVYRKPVGPAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERG 70

Query: 108 DFDYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +    IT   +                  +  +    L  ++V FKW  +Q  +  NP 
Sbjct: 71  LYYAADITRPILERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPA 130

Query: 159 LSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +E P+ +    R       T++ + Q      +G + R   E L  +G+R  +  R  
Sbjct: 131 ADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLD 190

Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264
           V  +       +I+  K      + L +  +  L           I N   K        
Sbjct: 191 VYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDG 250

Query: 265 ----NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                A   S    A     G+ K    H  R   AT   + GA    + A  G  +V+ 
Sbjct: 251 LDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVES 310

Query: 319 AETYTKGADRIRLGIKN 335
            + YT+ + R    +  
Sbjct: 311 TQVYTQVSIRALQAVHA 327


>gi|319936220|ref|ZP_08010640.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
 gi|319808794|gb|EFW05327.1| integrase/recombinase XerC [Coprobacillus sp. 29_1]
          Length = 362

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 101/344 (29%), Gaps = 42/344 (12%)

Query: 14  ERTRHGKIIY---YFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  + +  Y   Y++   G RI+              +++        +  +   +   
Sbjct: 4   YKDNNTQTWYASFYYQNWKGERIKKMKRGFRTKREADEFIA--------KFKLEQAKDLD 55

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126
              +  ++ Y +      +  N+ I+     + +I          +I+   I        
Sbjct: 56  MNFEEFLNIYLRDLSNR-IKQNTMITKTYVIEDKIKPYFKLKKINEISPADIIEWQNELL 114

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKE 177
                    ++P         +  +F  AV+   +  NP        ++    ++ WTKE
Sbjct: 115 AYRDENGNPYSPCYLKTVHNQLSAIFNHAVKYYNLKNNPARIAGNMGKEKSKEMKFWTKE 174

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           +  +F            AFE L + GLR  +              +++  K+        
Sbjct: 175 EYLKFSESMMRKDGVYQAFEMLYWCGLRLGEMLALTPGDFNFTKETVRINKSFQRIKGHD 234

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                       TV++P    + +            ++    +  +           + G
Sbjct: 235 VITDPKTEKSNRTVQMPHFLAEEIHDYISRLYGIKRDSRIFHITKSGLHHEMDRGCKETG 294

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           V +   H  R    ++  + G +A  +    G +++D    Y  
Sbjct: 295 VKRIRLHDFRHSHVSLLIEMGFSAVAIADRVGHESIDITYRYAH 338


>gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 413

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 101/309 (32%), Gaps = 31/309 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
           ++  TL  L+  Y K      LA  +  ++ +    I +         D    ++  + I
Sbjct: 109 EETMTLLKLVE-YHKQVAVSKLAPGTMKNYYTTETYIQKFIKQKYGKKDIPLDELNYRFI 167

Query: 120 RSGVESR-------KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                          H P +     + +  +R +   AV  +++  +P    +  + +  
Sbjct: 168 LDFENFLNDYKPKDHHKPINNNGVMKHMERLRKMVNLAVTMDWLVRDPFAKYK-LRFEKV 226

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQN-----NI 221
                +KE++    +      + +     F F  Y+GL   D      +++       + 
Sbjct: 227 ERGHLSKEELTVLLNKSFSIERLQSVSDMFIFSCYTGLAYIDIFNLTPENISKGIDGKDW 286

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            + K QKT T + V L      LL                  ++  + + + K  A   G
Sbjct: 287 LTTKRQKTDTTVRVPLLPEASDLLKKYRGHPVAEANGTIFPVISNQRMNGYLKEIAEICG 346

Query: 282 VNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           +NK  + H  R   AT      G     +    G  ++   + Y K  +      ++  +
Sbjct: 347 INKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHK--LSEDMHK 404

Query: 339 ISSVVDSDD 347
           +   + S D
Sbjct: 405 LEVRMASQD 413


>gi|116254396|ref|YP_770234.1| shufflon-specific DNA recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259044|emb|CAK10154.1| putative shufflon-specific DNA recombinase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 23/320 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           + R            +   L     +     ++   + TTL  L+  Y+           
Sbjct: 2   KPRAKSFDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYKIEVSP------ 55

Query: 91  SRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144
           ++        +I      +        ++   + S  + R  +  PS+A++ +  +  + 
Sbjct: 56  TKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDVASFRDERLSSVAPSTAVREMAILSHVI 115

Query: 145 KWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLL 200
           + A+R     ++ N    V RP  + E  R    ++ Q+       G  P  R      +
Sbjct: 116 EVAMRDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDGGKIPFMRTLLIVAI 175

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G+R S+        + +N   I  + T      E+P       A++   +      + 
Sbjct: 176 ETGMRRSEILGLKWTDISHNRRVITLEMTKNGSGREVPMTQRAFDALSRWKENAPVEESM 235

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +    F   ++    +A +     H +R    +   + G    E+ +  G K +   
Sbjct: 236 VFPIAPGSFEQVWRRLLKRANIVGLRFHDLRHEGVSRLFERGLNVIEVSSISGHKELRML 295

Query: 320 ETYTKGADRIRLGIKNSRRI 339
           + YT  +           R+
Sbjct: 296 KRYTHLS-----ADDLVARL 310


>gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13]
 gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13]
          Length = 338

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 90/296 (30%), Gaps = 48/296 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128
            ++ +Y     +  L   +  ++E     + +   D         +  +HIR+ ++  K 
Sbjct: 14  DILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIRNYIDFTKE 73

Query: 129 TPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                                          +   +L ++++ F W    + ++ +P   
Sbjct: 74  RGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISKDPSFK 133

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++R K   +     T ++  +             +  +  + L+ +G+R  +      + 
Sbjct: 134 IKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMRVGECLELREED 193

Query: 217 LQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------ 266
           +     +I       K      V   +   ++L      K+ +  +N     N       
Sbjct: 194 IDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNYIFVTNRGGKYQV 253

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F    +    KA ++K  + H +R   A     +G   + L    G   +   +
Sbjct: 254 HSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQ 309


>gi|253581707|ref|ZP_04858931.1| phage integrase [Fusobacterium varium ATCC 27725]
 gi|251836056|gb|EES64593.1| phage integrase [Fusobacterium varium ATCC 27725]
          Length = 357

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 90/330 (27%), Gaps = 37/330 (11%)

Query: 22  IYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            YY    G  ++              +         +   +        + + +   Y +
Sbjct: 16  FYYIDYQGKRKQKHKRGFRTKKEAEKW--------KREFLVKMTSDPTMSFQSMYDLYYE 67

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL-- 137
                 +   + I+ E  F+  I+    D     IT   IR           S   ++  
Sbjct: 68  DLKVR-VKYITMINKEKIFNLHILPFFKDISVSDITPLTIREWQNKLLKKDYS-NSYIGG 125

Query: 138 --TSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +   F +A++   +  NP       +  K K E       E  +   +F  E    
Sbjct: 126 IQKYLNAFFNYAIKFHNLKSNPLKITGKAKLNKPKKEMEIWEPHEFEKFIGTFLKEDYLH 185

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------TQKTGTIITVE 236
           R  F  L Y G R  +     +  +     +I+                 +   +   V+
Sbjct: 186 RSFFSLLFYGGFRIGEVLALRLDDIDFKNSTIRVDETKTFVTKDAIINSPKTEKSNRVVD 245

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
           +P   M++L             +     + +      +    KAG+     H +R    +
Sbjct: 246 MPLSVMEILKKHIKTLYGIENRDFIYSRHQSSIRNNLRRHLKKAGLKNIRIHDLRHSHVS 305

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +    G    ++    G         TY+ 
Sbjct: 306 MLIHMGVNVVDIADRVGHDNPTTTLNTYSH 335


>gi|329848435|ref|ZP_08263463.1| phage integrase [Asticcacaulis biprosthecum C19]
 gi|328843498|gb|EGF93067.1| phage integrase [Asticcacaulis biprosthecum C19]
          Length = 397

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 116/372 (31%), Gaps = 35/372 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             V + +   G    YFRKG  R   L  P  +  +   + A+           + + K 
Sbjct: 14  KHVQRVKRAKGNTDLYFRKGDYREGPLSSPDGTQALKDEVDAILKRLEATSRAVA-KPKT 72

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL   +++Y +SA + +LA +++  ++ Y D++    GD     IT   I    ++   
Sbjct: 73  GTLAGALNDYNRSADFITLARSTQNGYQDYIDELTDDCGDVLLADITRSWIMELRDAWAV 132

Query: 129 TP-SSAIQFLTSMRVLF------KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +A   L  ++             R +        +V RP    EG   W   +++ 
Sbjct: 133 RGYRAANMRLQLLKNALAPIIADDTDNRIKGDPFRSVENVRRPHDTPEGHPIWEDFEVEA 192

Query: 182 FKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             S       P LA    L            +    +         L     +  T+K  
Sbjct: 193 AISAAITRKHPGLARAIALGRYGGFRKGTIITVPMRARVVGYNEDGLPERRINWITEKRK 252

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGV----- 282
            +      +    +L  TP    T   N D     +      F        +AG      
Sbjct: 253 VLADRREDERLTAVLDATPNRAYTLAYNADGMAWTSRALGHAFDRLMNSLARAGKVRADM 312

Query: 283 --------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                     + HG++       A + A+   +MA     T   A  Y + A R  +   
Sbjct: 313 DQDGELFCPLTIHGLKHSRGVELAQSNASDAGIMAQLDHATTRAAAIYRRQAQRRVMSDH 372

Query: 335 NSRRISSVVDSD 346
              ++ +V +  
Sbjct: 373 AQDQVDNVRELR 384


>gi|307578024|gb|ADN53643.1| integrase [Staphylococcus aureus]
          Length = 381

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 104/361 (28%), Gaps = 52/361 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  +R                + L     +  ++N+     TT K +   + +     +
Sbjct: 29  TGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDI---TTFKEVYELWLEQYQ-NT 84

Query: 87  LAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
           +  ++   ++          +    D   +KIT  + +  +       S           
Sbjct: 85  VREST---YQRVLTLFDTAILEHFQDVPIKKITVPYCQKVINKWNKKYSDIKAIRIYTSN 141

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           +FK+AV  + +  NP    + P++K        + ++ ++++QF +F  +       F  
Sbjct: 142 VFKYAVSLKIIVDNPFAHTKAPRKKEAQQDASTKYYSSDELKQFLTFVEDDPLYYAIFRT 201

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------------- 232
           L ++G R  +      + +     +I   KT                             
Sbjct: 202 LAFTGFRRGELMALTWKDIDFTKQTISINKTCARGANYKLIIQEPKTKSSHRTISIDDKT 261

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
              +        ++ L       +         + N   +               S    
Sbjct: 262 ASVLKSWRTHQRVESLKYGHNTSDKHQHVFTTVRDNKPLYPEHCNKALDLICEKNSFKRI 321

Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
             HG R    ++  +AG +  E+    G   +      Y    ++ R   + + + +  +
Sbjct: 322 KVHGFRHTHCSLLFEAGLSIQEVQDRLGHGDIKTTMDIYAHVTEKQR--DQVADKFAKYI 379

Query: 344 D 344
           +
Sbjct: 380 N 380


>gi|291544082|emb|CBL17191.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 362

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 114/360 (31%), Gaps = 42/360 (11%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V K    +G       Y      R+ +      +               +     +    
Sbjct: 3   VYKNSD-NGTWYVLARYLDWKGERKQKCKRGFSTRKEALEW-------ERTFQQQNASDM 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T +     YR       L  NS ++ E   + +I+   G     +I+ K I +     
Sbjct: 55  DMTFEAFYELYRNDMRPR-LKENSWMTKEHIVETKIMPYFGKRSLSEISNKDIMAWQNEL 113

Query: 127 ------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTK 176
                 KH P S     T    +  +   AVR   +  NP   V      + + ++ WTK
Sbjct: 114 LAYRDEKHKPYSQTYLKTVHNQLSAILNHAVRHYGLHCNPASKVGNMGTEERKEMKFWTK 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           E+ ++F     +      AFE L + G+R  +           +  +++  K+       
Sbjct: 174 EEYKKFSDEMMDKPVSFYAFEVLYWCGIREGELLALTPSDFDFDKGTLRINKSYQRLHGE 233

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                        T+++PD   + +            N+    ++        +  +  A
Sbjct: 234 DVITTPKTKKSNRTIKMPDFLCEEMQDYLGMLYDVDKNDRIFNISKHYLGREMERGSKAA 293

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           GV +   H +R    ++  D G +A  +    G ++++    Y       +   + ++++
Sbjct: 294 GVKRIRIHDLRHSHISLLIDMGFSAVAIADRVGHESIEITYRYAHLFPSKQ--EEMAKKL 351


>gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
 gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136]
          Length = 418

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 18/309 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102
             Y +A   +    E      +  +         +++ H  S + +  +++       +I
Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151
             KS    + +I  K + S  +   + P           ++A  + +  +   K A    
Sbjct: 164 FAKSDTILFSQIDLKLVESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDG 223

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+ I+    V+  + +       T E++ +      +    R A  F   +G+R  D  +
Sbjct: 224 YLTIDIAAKVKGIQERESRREYLTIEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                ++      +   T             +        ++   +       + +  + 
Sbjct: 283 LKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINR 342

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     AG+ K  + H  R   AT+    G   + +    G   V   + Y K  D  
Sbjct: 343 PVKKWVEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402

Query: 330 RL-GIKNSR 337
           +    +  +
Sbjct: 403 KEKATETIK 411


>gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110]
 gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110]
          Length = 320

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-------RKHTP 130
            S +   L+  SR +     + I      GD D   +    +R    +       +K  P
Sbjct: 28  ASVYLSGLSEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAP 87

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW 186
            +A + L+++R +   A R   +A +                   R     +++      
Sbjct: 88  VTANKMLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQGSPELRGRSLDSTEIRALLGTC 147

Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDG 240
            E S    +       L  +G+R S+  +  ++  +++   +  +  K G    V LP+ 
Sbjct: 148 GEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRRVYLPEE 207

Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            +  +                +     +    +M++       + +A  AG+   S H  
Sbjct: 208 AISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIESFSPHDF 267

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           R+   +   DAG     +    G  +      Y +  +   R  ++  +
Sbjct: 268 RRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 316


>gi|330470281|ref|YP_004408024.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328813252|gb|AEB47424.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 412

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 89/365 (24%), Gaps = 51/365 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +    G+     +P           A   +   +     P    TT K    E+ 
Sbjct: 32  RYRVRYIAPDGKEKSQSFPDRKKREAQAFLANVQADILKGTYVDPDAGRTTFKQYADEWL 91

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            +A    L   +R   E      +    G      I    IR      + +  S      
Sbjct: 92  AAATTDIL---TRDRIEYELRLHVYPVLGHKPMASIQPATIREWARRIQESGLSVGYRRV 148

Query: 139 S---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               + ++F  AV    +  NP  +    + K    R       +      +   + R+A
Sbjct: 149 LFTDVSMIFNAAVDDRKIVSNPFSAKSIRRPKPAPTRVVPWSVDRLAAFRENLPLRYRVA 208

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIITVELPDG 240
            +     GLR  +        +      +   +                     V LP  
Sbjct: 209 VDLGAGCGLRQGEIFAVSPGDIDPTRPVLHVTRQIKLVRGVLIFAPPKGGKSREVPLPSS 268

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQF------------------SIWFKAKATKA 280
               L       +   +      +                         S  +K      
Sbjct: 269 VAGRLRKHAQDCQPVAVTLPWGSLTGEPRTVELYLTNPAGTALTRSMFNSGVWKPAVRAT 328

Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GADRIRL 331
           G+        H +R   A++  DAG +   L A  G         TYT       DR R 
Sbjct: 329 GIPDDRHNGMHVLRHTYASVLLDAGESIKALSAYLGHADPGFTLRTYTHLLPASEDRTRR 388

Query: 332 GIKNS 336
            I  +
Sbjct: 389 AIDRA 393


>gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131]
 gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 84/328 (25%), Gaps = 38/328 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFD 110
            G  P  E            + LI  Y K      LA  S    +S   ++     G   
Sbjct: 93  AGGDPLGERSRRREAPR--FQDLIDRYLKEHVPR-LAPVSAADQKSMLAKLVAPYWGRKL 149

Query: 111 YRKITTKHIRSGVESR----------------------KHTPSSAIQFLTSMRVLFKWAV 148
             +IT   +   +                         K TP  A +    +R +F  A+
Sbjct: 150 VTEITKPDVEKLLAQIAEGRARPSKAKPNNRARKLQGPKPTPVRANRVGEVLRKMFNLAI 209

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRC 206
              +   NP       + +    R  +K+++ +           R A      + +G R 
Sbjct: 210 EWGWRTDNPANGF-FRRIENPRERFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARV 268

Query: 207 SDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            +  ++  +                    +        +  +                  
Sbjct: 269 GEVRQSRFEQFDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPG 328

Query: 264 MNA----TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                   +   ++     +A +     H +R   A++    GA+   +    G   +  
Sbjct: 329 DVPGQPVKEIRRFWIRIQKEAQIEGVRIHDLRHTFASLLVSGGASLEMIGKLLGHTQMQT 388

Query: 319 AETYTKGAD-RIRLGIKNSRRISSVVDS 345
            + Y    +  +R G+     +     +
Sbjct: 389 TQRYAHLMEGPLRAGVDAVASVFRPKPT 416


>gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 325

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 39/318 (12%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESY----FDQIIRKSGDFD-YRKI 114
             +    P  +   +  + +       L+ ++  ++        D       +      +
Sbjct: 15  RKARDGLPGPVGAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGL 74

Query: 115 TTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               +R  + ++     + S+  +   S R    WA R E +  +P   +  P  K +  
Sbjct: 75  GLTVLREWLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLP 134

Query: 172 RPWTKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                E  +   S    G         +     E L  +G+R S+ C   +  + +    
Sbjct: 135 TVLRAEQAKSAMSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRV 194

Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIW 272
           ++          V         ++            +               +       
Sbjct: 195 VRVIGKGDKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRV 254

Query: 273 FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                       +   HG+R  +AT   + GA    +    G  T+   + YT       
Sbjct: 255 VHDAVGAVSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT---- 310

Query: 331 LGIKNSRRISSVVDSDDP 348
                  R+ ++ D   P
Sbjct: 311 -----VERLKAIHDRTHP 323


>gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 287

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++           PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDFTVQLSL-----PKRPHKLPQLLSCQDIAALLCHCQ 115

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              + R         GLR S+     V  +      +K  +        V +    + LL
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  AG+    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580]
 gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus
           licheniformis ATCC 14580]
 gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 379

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 45/363 (12%)

Query: 12  TKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKP 68
            + +T+ G K ++    G   +                 A+  +   ++ I+  +  +  
Sbjct: 5   QQYKTKTGYKWLFKMGVGIDPKTGNRKTTTRRGFKTKKEAVAAAAEFQKEIDNNALARND 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T + +  E+    H  ++  ++R    S F   I+   G    + IT  + +  +    
Sbjct: 65  ITFEDVFKEWWD-VHSKTIKRSTRYRKLSNFKKHILPHFGKLKIKDITRAYCQKVINLIA 123

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQ 180
               S         ++FK+A+R EY+  NP   V  PK       ++ E    W K++++
Sbjct: 124 QDIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKDEIK 183

Query: 181 QFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIF 222
            F          Q  + F  L+++G+R  +      + +                     
Sbjct: 184 TFLEKAHSQLAPQDYVMFYVLIFTGMRKGELIALEWKDVDLKEKTINIKQTMFFENGKEV 243

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQF 269
              T+K  +   + + D   ++L      ++                I  D + +     
Sbjct: 244 IQTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYP 303

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           +       TK  +++ + HG R   A+I  +AGA+  E+ A  G K +      YT    
Sbjct: 304 NDLLNRMITKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHVTK 363

Query: 328 RIR 330
             +
Sbjct: 364 TAK 366


>gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A]
 gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 407

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 104/319 (32%), Gaps = 24/319 (7%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAV 89
           IRL        +     A++  +    +         TL  +  E+           +A 
Sbjct: 73  IRLRIMKIQRELEIEGVAVSAGSVLDRFWGKDAPVQRTLFEVFREHNDKCARLSGTDMAP 132

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
            +   +E+                D    +++ + +       K +     ++A ++L +
Sbjct: 133 ATVQRYETSLKHTQDFVWETYHKKDILLDEVSRQFVEDYEFWLKTSKKCCHNTATKYLKN 192

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + + + A+ + ++  +P L +                ++++  S   +  +    R  F
Sbjct: 193 FKKIIRIALAKGWMKNDPFLEIRF-SLDKVEPDFLEDSEIRKLISKEIDIPRLGQVRDIF 251

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIG 251
            F  ++GL  SD    G +H+  +   ++  + G   T  + +       +K+L      
Sbjct: 252 VFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILEKYSTN 311

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMA 309
           +           +   + + + K  A   G+ K+   H  R   AT +   G +   +  
Sbjct: 312 EYCRKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARHTFATFALANGVSIESVAK 371

Query: 310 TYGWKTVDQAETYTKGADR 328
             G   V     Y +  DR
Sbjct: 372 MLGHTNVQMTRHYARVLDR 390


>gi|309812717|ref|ZP_07706461.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308433412|gb|EFP57300.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 388

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 86/323 (26%), Gaps = 21/323 (6%)

Query: 15  RTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             R+G   +    +R+  G +              ++           +++ P ++  T+
Sbjct: 21  TDRYGVGLRYRARYRREKGGKQFSKGFATKREAKEWLQLKASEIHTGTWVD-PARERMTV 79

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +     + S   ++    E++   I    GD   R +    + + V + +    
Sbjct: 80  GEWCETWLA--GYSSRKASTYRQAETHVKIIRATFGDVPVRSVKPSDVNAWVATMQRDGR 137

Query: 132 SAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +      + R   +      +   +  +PC     P +  +     T   +      + E
Sbjct: 138 AQSYVYATYRRFAQIMGDAVHDGLIHRSPCSRRTAPSQGEQRPYVATSAQVWALHDKFPE 197

Query: 189 GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +P +         L                     +Q     +KT  + T + +    
Sbjct: 198 HLRPAVLLAAFAGLRLAECAGLRAADVDFMRGIVTPAVQYPAEPLKTDYSRTPVPIPNDL 257

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNKSAHGVRKFSATI 296
             M   A+     E    N   ++          +               H +R + A++
Sbjct: 258 SLMLAKAVEGGAGEYVVTNEIGRQATPWAIERAMREVRGSVEDLPEGFRFHDLRHYYASL 317

Query: 297 SADAGATAHELMATYGWKTVDQA 319
              AG     + A    K     
Sbjct: 318 LISAGLDVKIVQARMRHKNATTT 340


>gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 329

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   + 
Sbjct: 53  EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +           F W   ++Y+  +P   + + K  T     ++ E M+  +    +
Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCK 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  ++ +                  V         L  
Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++              +++  +   I  +    K  +     H  R+  AT + D 
Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 408

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/398 (12%), Positives = 110/398 (27%), Gaps = 72/398 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENSQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  YV  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K       +     +                                   +L M
Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              ++    G K V   E Y   +  ++   +   ++ 
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397


>gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
 gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus
           luteus SK58]
          Length = 381

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 115/374 (30%), Gaps = 47/374 (12%)

Query: 11  VTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           V K  T+ G      +R                   A+ +++  S  + E+I +      
Sbjct: 4   VEKYVTKAGTLWKVRYRTPRRTTTEKRGFRTKRDAEAFAASVEVSKLRGEFIEAG-AARA 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T+  L   + +    G L  ++    ES     ++ + G     ++ T  ++  +     
Sbjct: 63  TVGALAGPWVQ--RQGHLKPSALRPVESALRVHVLPRWGSIPVAEVRTTDVQQWITDLSR 120

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       + ++  +    +  +   AV    +  NP   V+ PKR  +     + 
Sbjct: 121 GRPEATPPTSGRSATTVARCFGVLAAILDDAVADRRIVTNPARGVKLPKRTPKPRVYLSH 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------- 225
           E +      ++  S+       L Y+GLR  ++    V+HL      IK           
Sbjct: 181 EQVH----AFARASKYPTLVLVLAYTGLRWGEASALRVRHLDMLRRRIKVEENAVDVGGV 236

Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFK 274
               T KT  +  V  P      LA                                W+ 
Sbjct: 237 VHVGTPKTHRVRVVPFPRFLGDALAAQCEGKGRDELVFPGPGGGYMSPARVHEGHGSWWG 296

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           A    A V + + H +R  +A+ +  AGA    +    G  +     + Y    D     
Sbjct: 297 AAVRAADVPRVTPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNA 356

Query: 333 IKNSRRISSVVDSD 346
           +  + R+ +VV   
Sbjct: 357 V--ADRLDAVVAER 368


>gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
 gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135]
          Length = 418

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 18/309 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102
             Y +A   +    E      +  +         +++ H  S + +  +++       +I
Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151
             K     + +I  K + S  +   + P           ++A  + +  +   K A    
Sbjct: 164 FAKGDTILFSQIDLKMVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+ I+    V+  + +       T E++ +      +    R A  F   +G+R  D  +
Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                ++      +   T             +         +   +       + +  + 
Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINR 342

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     AG+ K  + H  R   AT+    G   + +    G   V   + Y K  D  
Sbjct: 343 PVKKWIEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402

Query: 330 RL-GIKNSR 337
           +    +  +
Sbjct: 403 KEKATETIK 411


>gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 303

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 82/283 (28%), Gaps = 24/283 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T   L  ++ K             +  +    I+ K        I    I+   E   +
Sbjct: 1   MTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCN 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQFK 183
                 + L  +R +   AVR  Y+  NP L +  PK K +           +       
Sbjct: 61  DLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLEL 120

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKT 229
              ++  +    F  L ++G+R  +        L  N                   T+  
Sbjct: 121 VEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTK 180

Query: 230 GTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            +   + L D  +++L     T       F +     M  +    W         + + +
Sbjct: 181 SSDRLISLDDETLEILLELHETFPTSTLMFQSESGGIMTPSLPRKWLLQIIKGTDLPQIT 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
            HG R   A++  ++G +  ++    G   +      YT    
Sbjct: 241 IHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTHITQ 283


>gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
 gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442]
          Length = 306

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRK 127
           LK+ + ++++   + +L+  +  S+ +   +      + +    R I    ++S +   +
Sbjct: 3   LKFAMKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQ 62

Query: 128 HTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRP 173
            T      +    L  +++ F +   ++ ++       +             +     + 
Sbjct: 63  KTRGNNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQM 122

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                  + ++      +      FLL +G R  +        L     ++         
Sbjct: 123 LRYYRRLKTRNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQ 182

Query: 234 ------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                         E      + L   P    T          +        K     + 
Sbjct: 183 QTVPLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFSD 242

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V  SAH  R   A     AG     L        +   E Y
Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|322387050|ref|ZP_08060661.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321142037|gb|EFX37531.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 112/376 (29%), Gaps = 60/376 (15%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +T  +T+ GK       G      +RIR+      +   A    L       E       
Sbjct: 1   MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRIVELKEKQFD 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAV----NSRIS-FESYFDQIIRKSGDFDYRKITTKHIRS 121
              T   L     +     +       +++ + +E     I     D +  K+T  HI  
Sbjct: 59  FVVTTDMLFDL-LEEDDLKNGRKISYTSTQRNNYER---HIKPYFKDTNLNKLTYDHIFE 114

Query: 122 GVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             E  K  P           ++  + L  ++ +F   +R+  +  NP  ++ +   +   
Sbjct: 115 FREYLKTKPKKQNENETLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPIRKPN 174

Query: 171 IRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ-------------- 215
           I+ W+ E+  +F+    +      L F    ++G+R  +                     
Sbjct: 175 IKFWSIEEFTRFRELIQDDEISYDLFFVIAFFTGMRMGEILALNWNDIDLLTNTIYVTKT 234

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDK 261
              + N  +   T+       + +     ++L    + ++               I +  
Sbjct: 235 VYFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTKNTEELQIIQSTP 294

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +        FK    +         H +R   A++  + G     +    G  ++   
Sbjct: 295 ITITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354

Query: 320 -ETYTKG--ADRIRLG 332
            +TY+    + +  L 
Sbjct: 355 IDTYSHLYPSKQKTLA 370


>gi|184154936|ref|YP_001843276.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226280|dbj|BAG26796.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|299782969|gb|ADJ40967.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 373

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 97/376 (25%), Gaps = 40/376 (10%)

Query: 1   MTPSLRL-PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M   ++  P ++ +       + +  R   G++ +       T   A  +         +
Sbjct: 1   MAQIIKKGPSYMVR-------VTW--RDEDGKQHKKSKSGFKTKAAARKA--GAEMESSK 49

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y                 + ++      +  ++  +    + +    G      I     
Sbjct: 50  YHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATY 109

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  +    + H+ ++A +    +RV  K AV    +  +          KT   +     
Sbjct: 110 QRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLN 169

Query: 178 DMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
             +  +         S G   R      +Y+G+R S+        L     +I+  K+  
Sbjct: 170 MEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLDLPFKTIEISKSWD 229

Query: 231 -------------TIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAK 276
                        +   + +    +  L           F   D     ++  +   +  
Sbjct: 230 FKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLF 289

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRL 331
             K  ++K     H +R          G   + +    G   +      Y    D     
Sbjct: 290 LDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKAR 349

Query: 332 GIKNSRRISSVVDSDD 347
                 R    +   D
Sbjct: 350 SDDQIERALVSLGVPD 365


>gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718]
 gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Nitrosomonas europaea ATCC 19718]
          Length = 323

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 75/305 (24%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R        ++ +   +  +  + I   G    +++    + + +         S
Sbjct: 10  LLDQVRDRIRIKHYSLRTETQYVQWIKRFILFHGKRHPQEMGAAEVEAFLTHLAVVGKVS 69

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + +     V R K+        T+ ++Q            
Sbjct: 70  ASTQNQALSALLFLYKEVLSIDLPWLDKVVRAKQPQRLPVVLTRTEVQAILVRM--SGTY 127

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------------------ 222
            L    L  +G+R  +  R  V+ +                                   
Sbjct: 128 GLMANLLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGAKDRVTILPESLVSPLQTYLL 187

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269
             +      I   +        L        T +I        +                
Sbjct: 188 QRRVLFDDDIRLGKASVYLPDALERKYPNAATDWIWQYIFPSGSFSIDPRSSVERRHHID 247

Query: 270 ----SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K     +G+ K  + H +R   AT   D+G     +    G K V     YT
Sbjct: 248 EKLLQRAMKKAVQTSGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYT 307

Query: 324 KGADR 328
              ++
Sbjct: 308 HVLNK 312


>gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176]
 gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176]
          Length = 385

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 90/345 (26%), Gaps = 46/345 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK     R      I +P       I  Y+ A      KR        + T  +     +
Sbjct: 24  GKKRMQART-----IDVPKEIPKRSIRQYVYAEAERLEKRFRTGIDESENTKFEAYAEHW 78

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS------- 131
                      ++   +    +      G     KI    +    E  +  P        
Sbjct: 79  LD-RAAKRYKASTLAGYRKMLELAYPFIGGLPLCKIRPMVLEGFAEELRKRPGRGGKPLS 137

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  ++L ++  + + A + + +  NP   VE+P++      P   E  +  +    E 
Sbjct: 138 ENTVHKYLDAVSAVLQDAAKNDILLYNPAHRVEKPQQ----RIPQQWEMRKLLQCLLQEP 193

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIIT 234
              R+ +   L +GLR  + C      L                         K      
Sbjct: 194 LLYRVFYLMALSTGLRRGELCALRWCDLHGGNQVKIQHSRSTVVGQGVLESDTKNHRTRI 253

Query: 235 VELPD---------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
           V +P             + L                + ++   FS   +    + G    
Sbjct: 254 VVMPQIVFDDLGELFTEQALENNGADWNGLIFQRKGKPIHPDSFSRHLRHLYDQNGFPEE 313

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327
              H +R F AT   + G +        G       E  Y    D
Sbjct: 314 YHLHTMRHFFATYLLEHGTSKQVAADLLGHADTAFLERTYCHPQD 358


>gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 409

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 99/372 (26%), Gaps = 56/372 (15%)

Query: 20  KIIYYFRKGHGRRIRLPYPH------ESTFIPAYMSAL--------TGSTPKREYINSPR 65
           +I Y F +  G++I                     +               +        
Sbjct: 29  RIYYIFYRKDGKQIEEKAGRQYQDDMTPARAAGIRAQRIQGKEATNEERREEVRAAKEAE 88

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL  +  EY+         V  +  +ESY        GD    +I    +     +
Sbjct: 89  AGRWTLDRIWEEYKAQRPDLKGIVTDQNRYESYLQ---PVFGDKTPSEIQQLEVDRLRIN 145

Query: 126 RKHTPS-------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               P                          +    L  +R +  +   ++ +       
Sbjct: 146 MLTKPRKPPRFRNGKRMEKPKNGKLPPLTPQTVKNTLEILRRIINFG-ERKGLCEGLGFK 204

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218
           +  PK         T + ++       E +   +A   +  LYSG+R  +  +    H+ 
Sbjct: 205 ITFPKVDNTKTEDLTPDQLRDLLKAIDEATNTEVAAIMKMALYSGMRRGELLKLQWDHVD 264

Query: 219 NNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
               F       G        +   + L       ++ ++   K                
Sbjct: 265 FERGFIHIVDPKGGASQKVPLNDASRALLENRSRTDSPYVFPGKGGKQRVCIRHEANKIK 324

Query: 278 TKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            KAG+ K     HG+R   A++ A +G    + L      K+    + Y    D      
Sbjct: 325 EKAGLPKDFRAMHGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHLRD------ 378

Query: 334 KNSRRISSVVDS 345
              ++ S++  S
Sbjct: 379 DALKQASNLAGS 390


>gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides
           ethenogenes 195]
 gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides
           ethenogenes 195]
          Length = 336

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 81/287 (28%), Gaps = 8/287 (2%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
            +       K  T   L + Y        +  N  + +++  D+     G     +    
Sbjct: 3   EKTKRRLSHKKLTTDELFTGYYDLLKIR-ITPNQYLQYKALLDKFQAFLGGMPPSQALAL 61

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R    ++  ++   +R    W      + +        P+           +
Sbjct: 62  KFLGLYHHRAQ--ATIFRYTGIIRGFMDWYGE--GLDVKVKKPKHLPEYVEPADIEKLVD 117

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +    +     ++  +   F   +GLR S+     V  +Q    +    + G  +    
Sbjct: 118 AITCKHNHKDTIARDEMLIRFAQMTGLRRSELANLKVSDIQLEKRT-VFVRQGKGMKDRA 176

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
               + L++           ++    + +   +      + KAGV    H +R   A   
Sbjct: 177 VPIPLGLISKLTSFLAHKQPSDSLFNLTSRSITDKLSTWSKKAGVKIHPHQLRHSYAEQL 236

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            + GA    + A  G +++     Y     R     +   ++  V  
Sbjct: 237 LEKGAALTSVQALLGHESLQTTSVYLGI--RPNALREAVDKLDMVKP 281


>gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902]
 gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902]
          Length = 291

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 79/279 (28%), Gaps = 29/279 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRK-- 127
           L+  +       + +  +R  +      + R       D   R++    +++ ++  +  
Sbjct: 2   LLRRFLGQCSRTN-SQETRDGYMRDLRHLTRWRDRHYPDLLIRELDPPMVQNWIDDLRGQ 60

Query: 128 -----HTPSSAIQFLTSMRVLFKW-----------AVRQEYVAINPCLSVERPKRKTEGI 171
                  P +  + L+ +  LF+W             R      +  +  +  K  +E  
Sbjct: 61  VDAGEIKPRTFNRRLSVVSALFRWASEPSRSGVTGIGRNPVPGKSHLVGGKEGKAMSEDD 120

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  +   +   +  ++  +        G R S+  R     ++      +    G 
Sbjct: 121 LSKLLGVVASSRDRSARNNRDFVLIRGSYLLGARVSEVARLQWCDVEPLADGGQIHLLGK 180

Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                            + L         F  +  K  +     +   +    KAGV+  
Sbjct: 181 GSKARTVRVSADTLQLFESLGRAGESDYLFPSSRTKSHLTRQAINYTMRKWGEKAGVDVH 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R   AT +   G     L  T G  + D    Y K
Sbjct: 241 PHKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVK 279


>gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
 gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium
           radiobacter K84]
          Length = 431

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 96/380 (25%), Gaps = 62/380 (16%)

Query: 21  IIYYFRKGHG------RRIRLPY--PHESTFIPAYM---SALTGSTPKREYINSPRKKPT 69
            I  +R G G      +RI++     H             A            +  +K  
Sbjct: 43  WIIEYRPGAGGRGVSKKRIKIGTLATHSPEAAREEASRTLARVTLGSDPAAARTDERKGQ 102

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126
            +  +   + +          +   ++   ++ I    G   +  +    +         
Sbjct: 103 VVAAVAETWLEEHVLIKRKPKTYNEYKLAVERYIKPVLGSLKFALVEPSDVLRMQAKIIR 162

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------ 174
                     + A + L ++  ++ WA   + V +         + K   I  +      
Sbjct: 163 GKVNKANGGRTMANRALATLSAIYGWAQDLKIVPLGFNPVTSIERFKENQIERFLTSEEI 222

Query: 175 -------------------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                                     K   +        G     A    L++G R S+ 
Sbjct: 223 GSLATALTEAETIGLPYEVDETKAKAKHANRVENRRTVYGEHAIAAIRLYLFTGCRRSEI 282

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMN 265
            R     +      +    + T     +     +     L               K +  
Sbjct: 283 LRLTWSDVDLERGILFLPDSKTGKKPVILSPQAQAILTNLTRVGKYVIAGADAGTKDEAP 342

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +KA   +AG++K   H +R   A+I A  G     +    G K +   + Y  
Sbjct: 343 RADIDRPWKAVTRRAGLHKLRLHDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAH 402

Query: 325 GADRIRLGIKNSRRISSVVD 344
                 L     +R++  + 
Sbjct: 403 ------LDTNPMKRVAGFIG 416


>gi|317120860|ref|YP_004100863.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
 gi|315590840|gb|ADU50136.1| integrase family protein [Thermaerobacter marianensis DSM 12885]
          Length = 369

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 105/357 (29%), Gaps = 50/357 (14%)

Query: 17  RHGKIIYYFRKGHGRR----IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK  +  R   GR      RL               +      R           T+ 
Sbjct: 4   KRGKDYWEIRVDIGRDPKTGKRLWKYTSVRGTKRDAERVEQQLKARHMQGELTAVRMTVD 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
            L+ E+       +    +   +     +I    G     ++T   I+  ++  +  P  
Sbjct: 64  ELLDEWLAHVR-TNREGRTYDDYAYCTRRIRAAFGPMRVDRLTRAQIQRWLDELQQAPRD 122

Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +  +   ++     +AVR  Y+  NP  ++  P+R+       T+E ++Q
Sbjct: 123 DGRPGNLSATTVQKHHRALHAALSYAVRMGYLGYNPADNLTLPRRQRSEPPMLTREQLEQ 182

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------- 228
                + G++    +    ++GLR  + C    + +  +  +I+ ++             
Sbjct: 183 LLEA-ALGTRWYPLWYVAAHTGLRVGELCGLWWEDIDWSRPAIRVRRALKQDREGKRLIL 241

Query: 229 ----TGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSI 271
                     V L D   ++L                    E  F     + +     + 
Sbjct: 242 GDVKNHEARVVWLDDRTAEVLDRHRAEQQLEIARAQRWEHPEHVFTAPGGRFLRPDVPTQ 301

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISAD-AGATAHELMATYGWKTVD-QAETYTKG 325
             +  A + G+   S H +R    +      G +   +    G  +    AE Y   
Sbjct: 302 VLRKHAKRLGLPPLSMHDLRHIHGSHLLQYHGWSITAVSERLGHYSPAFTAEVYAHV 358


>gi|297537324|ref|YP_003673093.1| integrase family protein [Methylotenera sp. 301]
 gi|297256671|gb|ADI28516.1| integrase family protein [Methylotenera sp. 301]
          Length = 333

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 26/339 (7%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           T +L LPP +     +HG   YYF     + IRL    +     A  + L G  P     
Sbjct: 6   TNNLDLPPHMQ---IKHGA--YYFVGRDKKWIRLSE--DKALALAKWAELEGEIPFPPNE 58

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P     +L  LI  Y         A ++    +   + + +       R +   HI  
Sbjct: 59  EKPI--KGSLGELIMRYMIEIAPHK-AKSTYQGNKLEAENLKKVFSKVQARAVLPTHIAK 115

Query: 122 GVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +++R  T    A + +  +  ++ + +R   V  NPC+      +  E  R     D +
Sbjct: 116 YLDTRGITSQVRANREIALLSHIYTYGMRWGVVNSNPCIG---VAKHKEKGRDRYIMDNE 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                        +  +    + LR  D     ++ + +    IK  KTG     E   G
Sbjct: 173 FEGVKNIASELIAIVMDMAYITALRKGDILSLKLEQVTDEGIWIKQNKTGAKQLYEWSIG 232

Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGVNKSAHGVRK 291
              ++        PI     F     +  + + F   +       A + G   + H +R 
Sbjct: 233 LHDVVDRAKALKRPIRGLYLFCTRQGKPYSDSGFKAMWNRVQVKWAEQGGSRFTFHDIRA 292

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + T + + G       +  G  +    E Y K  +  R
Sbjct: 293 KALTDAKNLGMD---AQSLAGHSSAAMTEHYIKQREFKR 328


>gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein
           [Bacteroides fragilis 3_1_12]
          Length = 537

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 25/280 (8%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVES 125
            K  + EY          +  +  S  S    +++         IT      +I    + 
Sbjct: 241 FKGFVMEYLDWLKQCKGYSPRTIESRYSQLKTMMQTLKVDSLEDITPSILDNYICKRHDE 300

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDM 179
                 +    +T +R  FK+A  +         S++ P+                ++ +
Sbjct: 301 DGCNRRTIAATVTILRGFFKYAEEKGLCNPGLVYSLKAPRVYAHENLPSFVPYNIVQQIL 360

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235
           Q  K     G +       L   GLRCS+     ++ +     ++  ++           
Sbjct: 361 QSKKDTAGIGVRDYAILLLLSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPL 420

Query: 236 --ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285
              + +  ++ +                     ++++ +      K +    G+      
Sbjct: 421 LPIVGNAIVRYIKEVRFNKSKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYG 480

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + G +  E+    G   +D    Y K 
Sbjct: 481 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKV 520


>gi|221200783|ref|ZP_03573824.1| phage integrase [Burkholderia multivorans CGD2M]
 gi|221206979|ref|ZP_03579990.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221173053|gb|EEE05489.1| phage integrase [Burkholderia multivorans CGD2]
 gi|221179355|gb|EEE11761.1| phage integrase [Burkholderia multivorans CGD2M]
          Length = 403

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 100/354 (28%), Gaps = 25/354 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKRE 59
           P    + T  G+      Y    G  R+  L    E T   A        A         
Sbjct: 29  PGFLCKITPAGRRVFMLQYRTNAGQRRKPALGLFGELTVEQARAMAQDWLAEVRRGGDPG 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T+  L  ++ +         +++  +++  ++ +I   G     ++    
Sbjct: 89  GDRAEARKAPTIAELCKKFMEDYSRKRNKPSTQDGYQAVINRNVIPLLGRKKVHEVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
           I   +E   + P+ A +    +R +F  +    Y           P              
Sbjct: 149 IAGLMEKLSYKPTEANKTFGVLRKMFNLSEVWGYRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                   +++ ++   E     L+         R S+ C+     +      +    + 
Sbjct: 209 ELVRVFRQLEKIEAEELENYVIPLSIRLQFEFAGRRSEICKLEWDWVDLEHRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T    +        L      +           +  + +   Q    +      A V   
Sbjct: 269 TGGMSKPMSEEAYRLLSTAPRLEGCRYVLPKPKDPTKHLTYGQHYCGWCRVLKAADVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             HG+R  SAT  A++G      M     KTV Q   Y    D+ +R   +   
Sbjct: 329 GTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYVHTEDKPVRDAAELVA 382


>gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 384

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 114/388 (29%), Gaps = 62/388 (15%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K + + G   Y F+         G++         +   A ++        ++    P
Sbjct: 4   IKKYQDKDGNTRYQFQVYLGVDPQTGKKKSTRRRGFKSKSAARIALSRIEVELQQEPVLP 63

Query: 65  RKKPTTL----KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
                           +Y  +        ++       F + I+   G+   R IT    
Sbjct: 64  VDNNILFVNVYHEWYDQYINTVR-----ESTWARTAGMFDNHILPLFGNKRLRTITVNQC 118

Query: 120 RSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  V        +    ++   +  +F++ ++  Y+  NP   +  P +           
Sbjct: 119 QRAVN-LWFKEVTYNYKRWYNYLVAVFEYGLKHGYITHNPARMITMPVKPDSWGDKPDNF 177

Query: 178 DMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +     + +       ++    F  L ++G+R  +      Q +     +++  KT T
Sbjct: 178 WDRDQLKTFFKCIDQQKETEKYCLFRVLAFAGVRRGECLALTWQDIDFVHKNLRVNKTLT 237

Query: 232 -----------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----- 269
                              TV L +  +++L      +  +++      +   Q      
Sbjct: 238 QGKRGKQIIQAPKTKKGRRTVSLDNTTVEILQRWHKQQREYYLFLGFNTLQPDQLVFANT 297

Query: 270 ----------SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                       W K   T   +    + HG R   A+    AGAT  E+    G + V 
Sbjct: 298 KNGFKSLNTPGKWLKRIITDYHLTPSITVHGFRHSHASALFAAGATIKEVQTRLGHEDVA 357

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVD 344
                YT          + + ++++ + 
Sbjct: 358 TTLNVYTHVT--KGQNQQAANKLANYLG 383


>gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus
           03BB102]
 gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus
           03BB102]
          Length = 292

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 37/288 (12%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFK 145
           ++ + + ++ +  II   G     K+   HI+   ++      +    L     ++    
Sbjct: 6   STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+Q  ++ NP    E PK++   I+ WT+E++++F     E S+  + +   + +G+R
Sbjct: 66  LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQE-SRYHIGYLLAITTGMR 124

Query: 206 CSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITVELPDGFMKLLAMT--- 248
             +      Q +     ++   +                +  T+ +P   ++ L      
Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184

Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                          +    N     +    F   F      AGV     H +R   ATI
Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRNNFIRAIHNAGVKEIKFHDLRHTHATI 244

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G   +      Y+       +  +  +     +
Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVKNFGKSI 290


>gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 402

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 61/385 (15%)

Query: 10  FVTKERTRHGKII--YY----FRKGHGR--RIRLPYP-HESTFIPAYMSALTGSTPKREY 60
            + K +T+ GK+   ++    ++  +G+  R+R   P +       Y   +  +     +
Sbjct: 4   RLRKWKTKEGKVQEAWWVDVKYQHPNGKVERVRKASPINTRRGAEEYERQVRHALLTGTF 63

Query: 61  INSPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                  +  TL      +   +   +   +S ++ +      ++   G+     I    
Sbjct: 64  GKENSAGRALTLGEFAPRFITDSENNN-KYSSVVTKQQILKDHVLPFFGEMALSAIGPAE 122

Query: 119 IRSGVESRKHTPSSA----------------------------IQFLTSMRVLFKWAVRQ 150
           I       +   S+A                               LT +  L   A  Q
Sbjct: 123 IEDFKALMRKKKSAARARKEAPTRAAIRKRKDTEAKPLSLKSINNVLTVVSRLLAVAEEQ 182

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +       V+  K+  +    +   +  +     SE  + R      L +GLR  +  
Sbjct: 183 RVI--PQAPRVKLFKKLPKPPFDFLSFEEVERLIAASE-PEWRALLLVALKTGLRQGELI 239

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-----------ITVELPDGFMKLLAMTPIGKETFFINN 259
                 L      +  ++T               TV+LP    + L      +  +    
Sbjct: 240 GLQWADLDLQRGKLHVRRTIWRGVVGLPKGGRERTVDLPASAGEALKGHRHLRGPYVFCQ 299

Query: 260 DKQKM-NATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGW 313
              K                 AGV++       H +R    +  A  G     +    G 
Sbjct: 300 PDGKALTPGLLKHPLLRALRMAGVSREQGGIGWHDLRHTYGSHLAMRGVPLKAIQELMGH 359

Query: 314 KTVDQAETYTKGADRIRL-GIKNSR 337
            T++  E Y   +  +R   ++   
Sbjct: 360 VTIEMTERYAHLSPEVRASAVQQLD 384


>gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01]
 gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01]
          Length = 321

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 83/311 (26%), Gaps = 54/311 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+ + R+     + ++ +   +  +  + IR        ++    I + +      R  +
Sbjct: 8   LLDQLRQQIRVRNYSIRTEAVYAEWAKRYIRFHHYRHPAEMGAAEIEAFLTHLAVKRDVS 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L+K  ++ +   +   +  ++P          T+ ++          
Sbjct: 68  ASTQNQALAALLFLYKEVLKLDLPWLQGVVRAKKP---KHLPVVLTRIEVDALLGQLQGD 124

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           S       +     L  +   R            ++  K        LP   ++ L    
Sbjct: 125 SWIVANLLYGAGLRLLEALRLRVKDVDFTRREIIVRDGKGQKDRVTMLPMRVVEPLRQHL 184

Query: 250 IGKETFF---------------------------------------------INNDKQKM 264
                                                                   +  +
Sbjct: 185 NKVRHVHQGDLADGFGEANLPFALARKYPNAAKEWGWQFVFPSVNRSQDPRGHGIYRHHL 244

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +        +  A +AG+  + + H +R   AT   +AG     +    G   V     Y
Sbjct: 245 HEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIY 304

Query: 323 TKGADRIRLGI 333
           T   +R  L +
Sbjct: 305 THVLNRGGLAV 315


>gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46]
          Length = 354

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 102/352 (28%), Gaps = 30/352 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK  Y F     R  +  +  +   + A   A                  T+     ++
Sbjct: 8   KGKWYYDFGHEGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130
           + K    G +   +  +F++  +Q           +     + T   R  ++     H+ 
Sbjct: 63  WIKVNKEGVITDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +    ++     A+++  +  +P   V      P ++ E      K+ +   +   
Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239
           +   Q  L    L+ +G R  +  R     L     +I    T T        I      
Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                LA  PI   T   N     +     +   +    +  +   + H +R    +   
Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344
             G + + +    G K++      Y+   D          +     ++  ++
Sbjct: 303 HNGVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354


>gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 324

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 85/294 (28%), Gaps = 44/294 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L + + ++       +L+  +  S+E      I       G  +   + T HIR  +   
Sbjct: 6   LDFYLQDFLLYCQSKNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYL 65

Query: 127 KHTPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +                                +   ++ +++V F W   +  +  NP 
Sbjct: 66  QERGKYTVVNREASRLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPV 125

Query: 159 LSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             +++ K + +     ++E+      QF      G + ++    L  +G+R  +     V
Sbjct: 126 DKIKQIKTERKQKAGISQEEFNLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTV 185

Query: 215 QHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----- 267
             +      I  K  K      V       + L      K+ +                 
Sbjct: 186 DDIDFKHRMILVKKTKGRKERYVYFSQVMARELKHYIRFKDRYTDTELLFPTTRNTPLTV 245

Query: 268 -QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F    K    + G++   H +R   A      G   + L    G  +V   E
Sbjct: 246 HSFEKQLKQAGERIGLSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299


>gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
 gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149]
          Length = 376

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 107/348 (30%), Gaps = 41/348 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G     F    G+R    +      +    + +  +T   E+ +        +      +
Sbjct: 20  GLYSARFVDRFGKRKHKRF----KKLQECRAWIADATYVDEHSDISMPSDMLVNQWFDYW 75

Query: 79  RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI 134
                   +  N+  ++ E Y   I    G+     +     + I   +  +++  S+  
Sbjct: 76  IGIKK-KIVRSNTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIY 134

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           Q   ++  +F++A   E +  NPC   V+    K    +     D+Q+    ++EG    
Sbjct: 135 QARIALYNMFEYAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAEGQSYE 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240
             + F+L +GLR  +      + +     +I+ +++                        
Sbjct: 195 NQYRFILQTGLRTGELVGLKWKDVDLKSKTIQIRRSMEYRYSAKKWRIGEPKSKSGYRTI 254

Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                             ++  ++   +E  F+      +  + +         KA + +
Sbjct: 255 PLTEEAVAILKKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPR 314

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            S H +R   AT   +AG     L    G   +      Y    +  +
Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113]
 gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 90/292 (30%), Gaps = 37/292 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129
           ++    H+    +  +  ++ S        +     D+       T + +   +  R   
Sbjct: 14  DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEAGNDWRQATHVDTEQFVAWQMRERGTK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175
                +  + +   +KWA++   V  +P    ++PKR                       
Sbjct: 74  AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQLAFQEAVQRT 133

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
                           +   +  + F  +L SGLR S++    V+ ++      K     
Sbjct: 134 EDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVRDVRVVNGIAKSVRII 193

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ++    +           L    +G   F     ++ +       + +    +AG+
Sbjct: 194 GKGNRERLVPLPEAFGQVLGAWLQDRAVGDFVFAKAPGEKPLGPHAVRAYLRRLIERAGI 253

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +K  + H +R   AT   +AGA   ++ A  G   +   + YT      R+ 
Sbjct: 254 DKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304


>gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
 gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC869]
          Length = 333

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR  +  +S  +      +           S  +    L
Sbjct: 4   RKIPSGKWLCECYPYGASGKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGSR----L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 293

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 84/280 (30%), Gaps = 25/280 (8%)

Query: 76  SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSS 132
             +     +    + ++  ++            D      +   + IR  +         
Sbjct: 4   QRFLNFLRFEKRYSNHTIEAYTHELTIFFTFLQDQGIPEEEADHRVIRFYLSHLMEEGRQ 63

Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
           A    + ++++R  +K+  R+     NP   ++  K   +      K+ M          
Sbjct: 64  ATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGA 123

Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242
                  +  L  E L  +G+R ++  +  +  +     +I    K      V +    +
Sbjct: 124 VDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKERLVPVNHTLL 183

Query: 243 KLLAMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
           + L +     +   I+N           ++              +       KS H +R 
Sbjct: 184 EKLKIYIQQLDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRH 243

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
             AT   D GA  + +    G   +   + YT    +R++
Sbjct: 244 TFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLK 283


>gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri]
          Length = 313

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 52/300 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 372

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 100/366 (27%), Gaps = 39/366 (10%)

Query: 10  FVTKERTRHGKIIYYFRK----------GHGRRIRLP-----YPHESTFIP--AYMSALT 52
            + K+   +G+   Y                RR  L       P         A   AL 
Sbjct: 5   HLRKKSISNGRTSLYLDYYPAIPHPDTGKDTRREFLGLYLFNRPKTPADKEQNAETLALA 64

Query: 53  GSTPKREYINSPRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
            +   +  I+            +L      Y +         N +  +ES    +   +G
Sbjct: 65  ENLRAKRQIDVQNGAYGFLSKKSLNTCFVAYCEQLAALKTGSN-KDGWESALHYLRDFTG 123

Query: 108 D-FDYRKITTKHIRSGVESRKHT-------PSSAIQFLTSM---RVLFKWAVRQEYVAIN 156
                  +T K  R                P +    ++     +   K A     + ++
Sbjct: 124 GQLKLSNLTPKKCRDFRAYMMDAKSQRNEEPLAVNSTVSYFNKFKAALKQAYIDGLINVD 183

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQ 215
               +E  K +       T  ++Q             + A  F   +GLR SD      +
Sbjct: 184 LNAKIESIKPEETRREYLTLAELQTLVQTDLPALPILKQAALFSALTGLRYSDIEALTWE 243

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFK 274
            ++++  S          T  +    +  LA+  +G            +  +       K
Sbjct: 244 QIRHDASSGYFIHFTQQKTRGVEVLPISELAVALLGTRLGDSQPVLPGLIYSAHWNKILK 303

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRL 331
                AG+    + H  R   AT+    G   + +    G + +   + Y K  D+  R 
Sbjct: 304 QWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKRD 363

Query: 332 GIKNSR 337
                +
Sbjct: 364 AADKIK 369


>gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989]
 gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989]
          Length = 333

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR  +  +S  +      +           S  +    L
Sbjct: 4   RKITSGKWLCECYPYGASGKRIRKQFATKSEALSYERRIMNSRVGDEFQDGSGPR----L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAILPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19]
 gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19]
          Length = 330

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 81/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L++ +  +      +  +   + +  ++++          ITT  IR       E  +
Sbjct: 53  EHLLNSFISAKKIEGCSEKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQ 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+A +P   + + K  +      + E ++Q      
Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     +FL  +G+R  +  +   + +  +               V         L 
Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLSREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 230

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                +           N+   ++  +   +  +       + K   H  R+  AT++ D
Sbjct: 231 QYLNERTDSNPALFVSLNSPHSRLTISGVEVRIRKMGQALSMPKVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|149022033|ref|ZP_01835995.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147929877|gb|EDK80866.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 375

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  Y+ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKFKYFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131
           + + + KS    ++  +++ + +S   ++      D     +  + ++  +E    +   
Sbjct: 68  IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188
            +A +    +R +F +AV+  Y+  N       P++         K +      +     
Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186

Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
               R  +             +G+R  +     ++++      I+               
Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246

Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275
                  T+++ +  ++ +    +               F      Q      F    K 
Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
              +A + K  S+H  R    +  A++G     +M   G        E Y+   +     
Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361

Query: 333 IKNSRRISSVVDS 345
                ++ + +D+
Sbjct: 362 -DMEDKLVNKLDT 373


>gi|330963555|gb|EGH63815.1| integrase family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 325

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 103/314 (32%), Gaps = 15/314 (4%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G      RK     +             + S + G   ++ ++++   + TTLK     
Sbjct: 9   NGTWRTKIRKKGYPSLS-ASFDTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQAQDR 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           Y +             +          K G     +I +  +    ++R     + ++  
Sbjct: 68  YEREVSAQKKGARQEKT--RIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125

Query: 135 QFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQ 191
             L  +  L+  A++   +    NP   +  PK   E  R  T +++       S   ++
Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVAKLRMPKGSRERDRRPTAKELAAVLKAASAIHAE 185

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  E  + + +R  +      +H++     ++  K G+   V L      LL   P  
Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
            +    +      +    S +F      A V +   H +R    +   + G +  E  + 
Sbjct: 246 IDGAVFSL-----SPHSVSQYFLKSCRAAKVTDLHFHDLRHEGTSRLFEKGFSIMEAASI 300

Query: 311 YGWKTVDQAETYTK 324
            G KT+   + YT 
Sbjct: 301 TGHKTMSMLKRYTH 314


>gi|91781187|ref|YP_556394.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|121582724|ref|YP_973166.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|91693847|gb|ABE37044.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|120595986|gb|ABM39424.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 400

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 97/356 (27%), Gaps = 25/356 (7%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPK 57
           L P    + T  G+      Y    G  R+  +    E T   A        A       
Sbjct: 27  LVPGFMCKVTPAGRKVFMLQYRTNAGERRKPAIGLYGELTVEQARSLAQTWLAEVRRGGD 86

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116
                +  +K  T+K L   +           +++  ++   D+ II   G    + +  
Sbjct: 87  PGGDKAEARKAPTVKELCGRFMSDYSKVRNKPSTQKGYQGNIDRNIIPILGRMKVQDVKR 146

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             + + ++  + TP  A   L  MR +F  A                P+           
Sbjct: 147 PDVATMMKKLESTPMEANHTLAVMRKMFNMAEIWGLRTDGTNPCRHIPQYPQGKTTRLIT 206

Query: 177 EDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           ++                SE     LA         R S+        +      +    
Sbjct: 207 DEEMGKLFRHLDKVEAESSEPPIVTLAIRLQFEFAARRSEILLLEWTWVDLENRRVAWPD 266

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGV- 282
           + T    +        L  T    E          +  + M   +    +      AGV 
Sbjct: 267 SKTGGMSKPMSEEAHRLLSTVPRHEGSLYVLPSLRDPLKHMTNGEHYNGWSRILKAAGVQ 326

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           +   HG+R  SAT  A++G      M     KTV     Y    D  +R   +   
Sbjct: 327 HVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVAMFMRYIHTEDAPVRQAAELVA 382


>gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica]
          Length = 376

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 95/306 (31%), Gaps = 36/306 (11%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDFDYRKITTKH 118
           P   P +L  L+  +       + +  +       ++         + G +    IT   
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERNWSETTLKVQTHHTYRFIL--WATERGLYYAADITRPI 81

Query: 119 IRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +                  +  +    L  ++V FKW  +Q  +  NP   +E P+ +  
Sbjct: 82  LERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKH 141

Query: 170 GIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222
             R       T++ + Q      +G + R   E L  +G+R  +  R  V  +       
Sbjct: 142 LPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTV 201

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSI 271
           +I+  K      + L +  +  L           I N   K             A   S 
Sbjct: 202 TIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISN 261

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R 
Sbjct: 262 LVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA 321

Query: 330 RLGIKN 335
              +  
Sbjct: 322 LQAVHA 327


>gi|191637856|ref|YP_001987022.1| Integrase [Lactobacillus casei BL23]
 gi|18148988|dbj|BAB83530.1| integrase [Bacteriophage PL-2]
 gi|190712158|emb|CAQ66164.1| Integrase [Lactobacillus casei BL23]
 gi|327381925|gb|AEA53401.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei LC2W]
 gi|327385085|gb|AEA56559.1| Type I restriction modification DNA specificity domain protein
           [Lactobacillus casei BD-II]
          Length = 383

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/366 (9%), Positives = 89/366 (24%), Gaps = 52/366 (14%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T +G   + FR   G+       ++S F     + +  +  + E  +       T    
Sbjct: 6   KTANGS--WAFRASTGKDDIRRQVYKSGFKTRREATIAAAKIEEELDSGKIVSDPTFADY 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
             ++ ++   G  +  +   +      I     D     I     ++ ++     P    
Sbjct: 64  FDKWIEAYKIGRHSEVTDEWYTIVAGYIREYFKDTKLSVIDRTAYQAFLDWLGTNPRKRS 123

Query: 132 -------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  +  + +R + K A+       +         +  +          +    
Sbjct: 124 EQPLSRSTVSRVNSYVRAVLKDAIEDGLTKHDFTRRAIISGKPAKDPSAKFLSVEEFKHV 183

Query: 185 FWSEGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                    L+           Y+G R  ++       +     +I   ++      +  
Sbjct: 184 IEIADRHADLSHLSNYVVLIMAYTGARFEEAIGISWDRVNFKEQTITIDRSWQYKKRKQH 243

Query: 239 -------------------------------DGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                               L             N+  + +   
Sbjct: 244 DNFGGLKNAQSLRTVPIPSQLVLILKRLRKEQQENALKDGYRDSDNLVCRNDWHRVVTNE 303

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
             +   K     A      ++HG+R    ++   AG     +    G  ++      Y  
Sbjct: 304 TVNNTVKRLCGYAKTKNVITSHGLRHSHGSMLLFAGVDIMAISRRLGHASIQITMRVYLH 363

Query: 325 GADRIR 330
             D ++
Sbjct: 364 EVDEMK 369


>gi|329768026|ref|ZP_08259537.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341]
 gi|328838511|gb|EGF88119.1| hypothetical protein HMPREF0428_01234 [Gemella haemolysans M341]
          Length = 367

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 106/355 (29%), Gaps = 39/355 (10%)

Query: 11  VTKERTRHGKIIYY----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           + +         YY             G  +RI             Y   +         
Sbjct: 2   IKEYINSKDNKKYYEVKNEYLGKNVYTGKEKRISKKGFRTKREAQNY--IVKAKNEFLNG 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
            N  R +  T   +   + +      +  +S  + ++    +I+    +     I   + 
Sbjct: 60  SNFLRSENITFGDVYKLWEEQHK-TQVKESSYHTIKTILDKRILPVFKELKIINIKLPYC 118

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++ +    + +          ++  +  +AV+ E +  N     + PK+  E  + +  +
Sbjct: 119 QNFINEVSKTYKKGYVTLIKGTIVQILDYAVKMEIIPTNYMKLTKVPKKIEEKKKNYYTK 178

Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
                       +  S+  +AF  L ++G+R  +      + +     ++   K      
Sbjct: 179 KELLQFLKIVKENYSSETYVAFRILAFTGIRLGELRALTWKDINFKKKTLTISKNMMNIG 238

Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAK 276
                           + L D  +K L           INN     N+  +   +  +  
Sbjct: 239 SKSKISTTKTKSSERIIFLDDETIKELKSYRELDNFISINNGIFIKNSRHYFNGMLLRIY 298

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                + + + HG R   AT+  ++  +A E+    G K +     TYT   D  
Sbjct: 299 RDFPKLKQITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEK 353


>gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612]
 gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612]
          Length = 408

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/377 (12%), Positives = 111/377 (29%), Gaps = 58/377 (15%)

Query: 9   PFVTKERTRHGK-IIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKRE------- 59
            ++ +    +GK + +       + I L                      K +       
Sbjct: 19  RYIIRYENVYGKAVYHSVYAKTYKEIILKLEEAENKVFEEVQLQRLLREEKEKSNQRGII 78

Query: 60  --------YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
                     N   K  T L   + ++ +S    ++  +S   + +     ++ + G  +
Sbjct: 79  ENVLNLQFDENQKDKAKTLLAEWLRKWLESYKKYTIKQSSYTRYSNVVNRHLVPRLGHCE 138

Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              +    I+  +    E  K   S+    +  +    K A ++  +  NPC  +  PKR
Sbjct: 139 LENLKPDAIQDYIKATLEENKIAVSTVRGHIVILSAALKQAQKEGLIHKNPCDDIILPKR 198

Query: 167 KTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             +       ++ Q+ ++    S   +   A  F L +G+R  +      + +  +   I
Sbjct: 199 PIKKPVFLDVKEAQKLETVLKNSRDHKKSTAVLFALKTGIRLGELAALRWKDVDFDEQVI 258

Query: 225 KTQKTGTI------------------------ITVELPDGFMKLLAMTPIGKETFFINND 260
           + + +                            T+ +     +LL       +     ++
Sbjct: 259 QIRDSVQRVKNSEKSGMKTKMVFEGTKSYSSNRTIPMNPEIHELLYQYYETMKHRENFSE 318

Query: 261 KQKMN--------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
                           + ++F+    KAG+ + + H +R   AT +A        L    
Sbjct: 319 TFVFTNRKNSFIDPRVYQLYFRRILKKAGIRHVNFHALRHTFATHAASKNMQISVLSRIL 378

Query: 312 GWKTVD-QAETYTKGAD 327
           G   V    + Y     
Sbjct: 379 GHSNVGLTLQLYVHVLS 395


>gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
 gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36]
          Length = 322

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 17/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R R            Y   L  +  ++ ++  P  K   L+ LI  +         
Sbjct: 19  RNGKRHR-KKFKTKGEAQQYERWLLSTQNQKGWVEKPADKRP-LRDLIDLWYHYHGQQLK 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVLF 144
                     +   I +  G     ++T +     R+   ++ +  ++  +    +  +F
Sbjct: 77  RP---EKELKHLLSIDKDLGYPRADQVTKQRFMQFRADKMAKGNKATTINRSQVRLSGVF 133

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +          L      +       +  +           G +  +A    L +G 
Sbjct: 134 TVLIDAGEYHNEHPLKGISKLKLRASEMGFLNKKEITQLLSNLSGDELHVAKLC-LSTGA 192

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S++       + +   +    K G   TV +   FM  +     G+            
Sbjct: 193 RWSEAAELRGNDIIHGRVTFNDTKNGKNRTVPITPEFMNEIHNGKTGRLFNS-------- 244

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +F    KA+       ++ H +R   A+     G     L    G  T+ Q  TY  
Sbjct: 245 SYMEFYDVLKAQGFDLPKGQATHVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAH 304

Query: 325 GA 326
            A
Sbjct: 305 LA 306


>gi|307271277|ref|ZP_07552556.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306512026|gb|EFM81017.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
          Length = 376

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 41/355 (11%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G +    ++   GR         ST   A ++A        +  +    +     
Sbjct: 5   KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
                + +    G L+ ++        D   +   D   +++T +  +  +     T ++
Sbjct: 64  EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123

Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           A   +  T MR   K A+ +  +  +P   V+   +K          + Q+      E  
Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                    R    F + +G R S+        +     ++K  KT              
Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275
             +   + + D  + LL    + ++ +++             N++ + ++ T  +   + 
Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              K G    + HG+R   A+I    G     +    G K +    +TY    D 
Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|239995901|ref|ZP_04716425.1| phage integrase [Alteromonas macleodii ATCC 27126]
          Length = 395

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 100/346 (28%), Gaps = 35/346 (10%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           ++       G   +Y+R K +G+  + ++      +   A + A +  +  +    +   
Sbjct: 32  YLKFVVRPSGSKSFYYRAKKNGKDLKRKIGDASTMSLATARLIADSQHSGFKNESQNGVS 91

Query: 67  KPTTLKWL-----ISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITT 116
            P+++K L        YR++         +    +   +      +    G     ++  
Sbjct: 92  VPSSIKSLTVNCMFELYRENELKHR---RTVAGRKHALEVAYNLHVKASLGHRAVAQLDR 148

Query: 117 KHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIR 172
           K +RS     +     A  + ++ ++    + +  E    +        + P        
Sbjct: 149 KEVRSFFRELEDKGYCAHNKAVSVLKAACNYVIDFEDAGLILNPFERIKKMPGVTRSRYL 208

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            + +         ++        +   L++G R ++      + +  +        T T 
Sbjct: 209 TYQEAGQLMKALEYASNQDVADIYRMALFTGARLTNVKTMEWKDINLSNAVWLIPATRTK 268

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI--------WFKAKATKAG--- 281
                      L       ++    ++     +  +            +KA   +AG   
Sbjct: 269 TNQIYEIPLHPLAVYLLRKRQKTCPSSHFVFPSKQKSKYGYITGGDSVWKAAIKRAGLYH 328

Query: 282 ----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +    H +R+  AT    +GA    +       ++     Y 
Sbjct: 329 DNPNIRPRPHDLRRTFATWQIQSGADVSVVSKALCHTSLKHTMVYA 374


>gi|157158542|ref|YP_001463323.1| phage integrase family site specific recombinase [Escherichia coli
           E24377A]
 gi|157080572|gb|ABV20280.1| site-specific recombinase, phage integrase family [Escherichia coli
           E24377A]
          Length = 342

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 38/335 (11%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +LPP V K      K  YYF+      I L   ++ +    ++          +     
Sbjct: 11  NKLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV---- 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T   L +++  S ++  L   ++  +  +  +++   G      +   H+R  ++
Sbjct: 62  ----MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNVKPAHVRLYMD 117

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A     SM  +F+W   + YV  NPC       + +   R +   D +   
Sbjct: 118 KRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQG---VSKFSLKPRDYYFTDEEYIA 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +       + A E       R  D  +     + +    I+  KTG     +  +    
Sbjct: 175 IYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSERLTF 234

Query: 244 LLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295
            L       G+     N    + + T F+  ++     A       +  + H +      
Sbjct: 235 ALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL------ 288

Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                G +       E     G KT  Q  TY + 
Sbjct: 289 --KAKGISDYDGSSKEKQLFSGHKTEAQVLTYDRK 321


>gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-EC]
 gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis
           D-LC]
          Length = 308

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 31  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 90

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 91  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 148

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 149 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 208

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   +  A
Sbjct: 209 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 268

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 269 DLRIIQEMLGHSRISSTEIYTHVASE 294


>gi|325924348|ref|ZP_08185892.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
 gi|325545213|gb|EGD16523.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865]
          Length = 358

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 111/354 (31%), Gaps = 31/354 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK       +           +         +  YI     + TT++  
Sbjct: 6   KTPAGAWKAVIRKTGWP-PAIKTFRTKRDAEDWARRTEDEMVRGVYIRRAGSERTTVEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------- 124
           +  Y            ++IS     + +I+  G +    +T + +    +          
Sbjct: 65  MRRYLAEVTP-GKRPVTQISEVRRAEVLIKHLGRYSLAAVTAEIVARFRDERLAGDLDAQ 123

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180
              R  + ++    L  +  +F  A+++  +    +P L + RP       R     + Q
Sbjct: 124 GQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHSPVLGIRRPPPGPGRDRRLIPHEEQ 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236
           +        S P L +   L   +G+R S+        +       +    K G+  TV 
Sbjct: 184 RLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRRVARLQQTKNGSSRTVP 243

Query: 237 LPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           L    +++L                 +       K  + QF+  +      +G+ +   H
Sbjct: 244 LTQEAVRVLRAALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPAWMKLKRDSGMADLHFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +R  + +   +AG +  E+ A  G K++     YT    R    +    R+  
Sbjct: 304 DLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAEDLVSKLDRLGR 355


>gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
 gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143]
          Length = 298

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 82/278 (29%), Gaps = 31/278 (11%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           LIS Y         L+ ++  ++++   Q      + DY  + +      +       ++
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQFY----NSDYDNVESY--IEHLTQSNIKTNT 58

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK-------- 183
             + +  M+V + +   Q  +  NP   +    + +    +    + ++           
Sbjct: 59  LRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDVLKSIFLYLEQRVV 118

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236
                       +  L    LL +G+R S+ C   ++ +   N    I  +     I   
Sbjct: 119 LSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFL 178

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGV--NKSAHG 288
                  LL          F +           ++     +  K    +  +    + H 
Sbjct: 179 GDQKTFNLLETYINKTRNEFNDFLFPGKHSLKPLSEQSVRLILKRIVEQNSLFRTITPHM 238

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            R   AT+  D       +    G  ++   + YT  +
Sbjct: 239 FRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276


>gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580]
 gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580]
          Length = 426

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 81/304 (26%), Gaps = 57/304 (18%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
               +  ++ ++  +  + IR+  D + +  +   I   V           SS  Q L +
Sbjct: 121 AKHYSKRTQEAYSYWISRFIREHKDKNLKAFSDAEINPFVSRLATKEKVAASSQNQALAA 180

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  L+K  +     +    +  ++ K+    +       +         G   RL     
Sbjct: 181 LLFLYKNILGLTIQSPENIIRAKKSKKLPAVLSREETAKIFSLLPENDYGLFIRLL---- 236

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------------KTGTIITV 235
             +G+R  +S R  VQ +  +   I                           +    I  
Sbjct: 237 YGTGMRLMESLRLRVQDIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHE 296

Query: 236 ELP-----------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                       +  +       +        +  ++ +     
Sbjct: 297 ADCKDGFGLVPLPSALAKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRT 356

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 ++G+ K    H  R   AT   ++G     +    G   V     YT   +R  
Sbjct: 357 LHEAVLRSGIPKPIGCHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNRGG 416

Query: 331 LGIK 334
           LG++
Sbjct: 417 LGVQ 420


>gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104]
 gi|118165575|gb|ABK66472.1| integrase [Mycobacterium avium 104]
          Length = 368

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 30/317 (9%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
           P  E     + +  TL+     +  +     LA  +R +++ +  + ++   GD     I
Sbjct: 55  PPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYQGHLDNHVLPALGDLGLADI 112

Query: 115 TTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           T +H+R+      +   +   Q    +  +F  AV  + +  NPC      + K      
Sbjct: 113 TPEHVRTWFAGLGNEHETRNAQAYAVLNGVFNTAVADDLIDRNPCRIRGAAQVKHARRSV 172

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------- 217
              +  Q            RL      + GLR  +        +                
Sbjct: 173 VLLDATQLTALAEKMPDDARLGVLLAGWCGLRKGEVFALRRGDVAADGSSVRIERSVTYR 232

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFS 270
                      +    +    P     +L                 + +        +F 
Sbjct: 233 EGRFEVGPTKTRESRRVVSVPPHVRPAVLEHLQRHVADGDDALVFVEPSTGSFAGEKRFR 292

Query: 271 IWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +++     G  +   H +R  +  ++A  GAT  ELM   G  + + +  Y   A+  
Sbjct: 293 TAWESARAAIGQPDMHFHDLRHAAGVMAAQTGATVRELMDRLGHTSPNMSMRYQHTAEGR 352

Query: 330 RLGIKNSRRISSVVDSD 346
              +  + ++S++  ++
Sbjct: 353 AAAL--ADKLSALASTN 367


>gi|46202152|ref|ZP_00053672.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 409

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 57/387 (14%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK I+   ++   G+R+            ++++ +  +  K+  ++   +   T++  
Sbjct: 4   KSGKPIWCVEYKAPDGKRVTKSTFVSKREAESFLAEI--TVEKKRGVHVAERDSITVEKA 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE--------- 124
              + K A    L  +++  +E +    I  K G     K+T   + +  +         
Sbjct: 62  AENWLKDAEAAGLERSTQEQYERHVRIYINPKLGTTKLSKLTLADVSNFRDDVTAGWEGE 121

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRP 173
              R  +P+ A +  TS+R +   A  + +VA N C +  R K+             I  
Sbjct: 122 GGKRIGSPAMAGKVFTSLRSIISLAQEKGFVATNVCAAARRKKKSKRHAPTNGAAMRIPT 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSI 224
             + +  +  +      +        + +GLR S+       ++                
Sbjct: 182 IPEIEALEKAAAEHYPGKMHAMLSTAILTGLRLSELRGLRWANVDLDAGKLQVVERANEW 241

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273
               +    T        K L  T    +      ++ K            +A+     F
Sbjct: 242 GEIGSPKSETSWRTMDMGKPLVATMRAWKLAQPLAERGKNLVFPNGAGNVESASNLHHRF 301

Query: 274 ----KAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               + +A   G +     S H  R   A+I    G T  E+    G  T      TY  
Sbjct: 302 VHPVQVQAKLIGEDEDTRFSWHDFRHLYASIHIANGRTVVEVQHLLGHSTPSTTLNTYAH 361

Query: 325 GAD---RIRLGIKNSRRISSVVDSDDP 348
                   R    +          + P
Sbjct: 362 LFQATGEKRNAGDDIAAALFGASQNKP 388


>gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104]
 gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104]
          Length = 402

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 91/358 (25%), Gaps = 36/358 (10%)

Query: 1   MTPSLRLPPFVTKE-----RTRHGK------------IIYYFRKGHGRRIRLPYPHESTF 43
           MT    L   V        R  HG               +  R    +            
Sbjct: 1   MTQKRNLRAGVEDRWNKTVRDEHGNPQTVPSATYGKGKRWRARYVDEQGREHVQSFTRKV 60

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                     +T       +PR    T++     + +          +     ++  QI+
Sbjct: 61  DAQQWLTNQTATIVAGTHVAPRDAKLTVQQWCDTWIEGYKVHR--EGTVREARTHIRQIV 118

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLS 160
            + GD    ++    +++     +     A       + +  +   AV    +  NPC  
Sbjct: 119 TEFGDTPLTQVRPSQVKAWTARLRADGMKASYIYALHSRLSQIMADAVHDGVLGRNPCSR 178

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGV 214
              P      +   T E +        +  +  +             SGLR SD      
Sbjct: 179 RTAPPMGKAKVYVATTEQVWALHDAVPDHLKVAVLLGAFAGLRVAEVSGLRVSDVDFIRG 238

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                  +S K  KT            + LL    + K    +                +
Sbjct: 239 VVHPKQQWSDKPLKTEGSSAPIPIPQDLALLLSASVQKYPAEMMVTNGLGTDRCGPWIIE 298

Query: 275 AKAT--KAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                 + G++      S H +R + A++    G     + A     +     +TY+ 
Sbjct: 299 RAIRDVRRGIDGLPEGFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 356


>gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
 gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus
           HTCC2559]
          Length = 295

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 25/276 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125
           T+K  +  Y +       ++++  ++ +      D + R+  +     I    IRS + S
Sbjct: 3   TIKAFLD-YLRLE--KKYSIHTINAYNNDLVALSDFVSREFSETSINNIPYALIRSWIIS 59

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +     +  + ++S++  + +  + E + ++P +  +  K +     P++K+++   
Sbjct: 60  LVDSGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEVSDV 119

Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL 237
            S       E  + +   E    +G+R S+     +  +   N +     K      + L
Sbjct: 120 LSGFTLNSFEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKRNKERIIPL 179

Query: 238 PDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287
            +     L      K+          F+ +   K+  T              + + KS H
Sbjct: 180 IESVSLTLRQYFEIKDAEFKESSKWIFVTSKNDKVYETLVYRIINNYFSKVSSKIKKSPH 239

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +R   AT     GA  + +    G  ++   + YT
Sbjct: 240 LLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYT 275


>gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617]
 gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617]
          Length = 339

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 20/327 (6%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWLISEY 78
             Y     G+   L          A  + +   +         R       TL   +  Y
Sbjct: 6   YCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRIKGADSITLHAWLDRY 65

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136
                   +   + + + S    I RK  D     I+TK + + + +   +   +SA   
Sbjct: 66  ETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLI 125

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            +++  +F+ A+ + +VA NP  +    K +    R    E ++ + +        RLA 
Sbjct: 126 RSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAM 185

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------LAM 247
           +  + +G R  D CR     + +N   I+  KTG  + + L      L            
Sbjct: 186 DLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLVDTLQKCR 245

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGA 302
                ET   +     ++    S +F      +G+       + H +R  SA        
Sbjct: 246 EASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSA-RLYRNQI 304

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
                    G K+   A  Y     R 
Sbjct: 305 GDKFAQRLLGHKSDSMAARYRDSRGRE 331


>gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021]
 gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021]
          Length = 339

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 106/314 (33%), Gaps = 43/314 (13%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT 116
           R  P  L  +++E+  +     L+ ++   +    + +   +         D + R ++ 
Sbjct: 6   RPVPVGLSEVVAEFLSALRTKKLSSHTVAGYRRDLELVAGLAAAAAGVGVADLEVRSLSG 65

Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           + +R+         +P+S  +  ++      + V +  +  NP  +V RPK+  +  +P 
Sbjct: 66  RLVRTAFAEFSGPRSPASVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPL 125

Query: 175 -----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                       +      ++      +  +     L +G+R ++     +  +  +   
Sbjct: 126 LGDGSASATLLERIAAGARRARDPWVERDLVVLALALVTGMRSAELLGLTLGSIGGSPGD 185

Query: 224 IKTQKTGT---IITVELPDGFMKLLAMTPIGKETFF------------INNDKQKMNATQ 268
            + Q  G      ++ +     +L+      +   F            ++   + +    
Sbjct: 186 RRIQVVGKGGRSRSLPIEAPVERLVERYLHSRMVRFGLSALPRSAALLVDTGNEPLRRGG 245

Query: 269 FSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +     AGV+         H +R   AT  A+ GA+AHELM   G  ++   + Y
Sbjct: 246 LQYLVRQCYRHAGVHDRVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAY 305

Query: 323 TKGADRI-RLGIKN 335
                R  R   + 
Sbjct: 306 IASTAREVRRAAQG 319


>gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
 gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Synechococcus sp. WH 5701]
          Length = 323

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+  +R+       A  +  S+  +  + +R  G    R++  + I + +         S
Sbjct: 9   LMDRFREEMQVRHYARRTITSYAQWVKRFLRFHGMRHPREMGEEEINAFLSHLATEGQVS 68

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L           +     V R +++       T  +++   S        
Sbjct: 69  ASTQNQALSALLFLYRTVLSGDVGNLEGVVRARQRKRLPVVLTVAEVKAVLS--QLEGVE 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVE-------------- 236
           +L  + L  SGLR  ++ R  V+ +        +++ K                      
Sbjct: 127 QLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDKDRVTMLPTSVVEPVQAYLL 186

Query: 237 -------------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  +        +       +  ++
Sbjct: 187 AVREIHRADLAAGWGRVMLPLALGRKYPTAASEWAWQWVFPQAHRWHDRNNRTEGRHHID 246

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +      K     AGV+K  S H  R   AT   + G     +    G   V     YT
Sbjct: 247 PSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYT 306

Query: 324 KGADR 328
              +R
Sbjct: 307 HVLNR 311


>gi|314933994|ref|ZP_07841359.1| integrase [Staphylococcus caprae C87]
 gi|313654144|gb|EFS17901.1| integrase [Staphylococcus caprae C87]
          Length = 354

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/354 (10%), Positives = 91/354 (25%), Gaps = 27/354 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +  +GK  Y F     R  +  +  +     A   A                  T+   
Sbjct: 4   RKQPNGKWYYDFGYEGKRYKKKGFKTKREATEAESIAKNKVM-----RGLIINNKTSFIK 58

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             +++ K      ++  S  +F +  +Q        +   +T   + +    +       
Sbjct: 59  YYNDWIKVNKENVVSEKSYATFNNAINQFKLFLETENISDVTLSDLNTTFYRKFIKWYGE 118

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---------TEGIRPWTKEDMQQFKS 184
                ++R +     +    AI   L  + P  K          +    +   +      
Sbjct: 119 NHATETVRKIHNCLKQSIDDAIQEGLMHKNPTYKVVVKGRIPAQKEDEKFMSIENFVNLK 178

Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSD-------SCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +   +     +    L+ +G R  +               +       +T      I  
Sbjct: 179 KYVSDTPIQSYIFVYILIITGGRFGEVQKLSRSDLDYKNNTIHLPGTKTETSDRIVDIPA 238

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
              +   K L+  P+       N     +     S   +    +  +   + H +R    
Sbjct: 239 TDMNMLRKTLSKMPVSLSNQLFNTGVGLITHNAVSKVLQKFCLENKIGKYTLHSIRHTHC 298

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRISSVVDS 345
           +       + + +    G K +      Y+   D    +   K    + ++  +
Sbjct: 299 SYLLHNDVSIYYISKRLGHKNIKTTMDVYSHLLDEVEQKEREKAVNVLENMNGN 352


>gi|256957791|ref|ZP_05561962.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256948287|gb|EEU64919.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|315035859|gb|EFT47791.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/383 (10%), Positives = 101/383 (26%), Gaps = 53/383 (13%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ER + G        G   +G  IR+    E        + L     + E          T
Sbjct: 9   ERLKSGNYRLRVTVGYNENGNPIRINKTVEIKSQRKAYAELDDWIEELEEHGYEDISTIT 68

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            +   +   K      L   +   +      + +    +   R+I    I+  V + +  
Sbjct: 69  FENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSFKNKKIREIKPFQIKDIVIAAQPL 128

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKE 177
                  +  +  ++L ++  +F  A  Q  +  +         +   +K     P++ E
Sbjct: 129 SKKNTTLSRKTKKRYLNALSSVFNVARDQYRIITHNPVSDVRLPKESVKKKGTPEPYSIE 188

Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCS--------------DSCRAGVQHLQNNI 221
           +++            + +        +G R                 + +   + + +  
Sbjct: 189 EVKLMLDALEEHANLKTKALVMTAFITGAREGEIAAVEESDFDFSAMTVQFHQRIVLDEN 248

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-------------- 267
              + +        +        L +             + +++                
Sbjct: 249 KKYQQRDGLKASDSKTIPVPRSYLELMKTFMSINQKARKELRIDPKHKYVFGAPEGNFEL 308

Query: 268 --QFSIWFKAKATKAGVNK-SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAE-TY 322
                  +     +AG+ +   H +R  SA+ + AD       +    G K        Y
Sbjct: 309 PTSLYRNWNRFIKRAGLRQIRFHDLRHTSASFLLADPTIPIKTVQELLGHKDYRTTMNIY 368

Query: 323 TKGADRIRLGIKNSRRISSVVDS 345
               +  +     S R S  ++ 
Sbjct: 369 GHALEETKR--TASDRFSEFLNE 389


>gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 319

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  ++  +    I   G      + T+ +   +    +  + AI     
Sbjct: 13  QEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGDLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243
             SGLR S+  R  +Q +       +++  K        L     +              
Sbjct: 131 YGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190

Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277
                         L                    +T  + +              +   
Sbjct: 191 DDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A          + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5]
 gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5]
          Length = 330

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 26/286 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG--VESRKHTPS 131
             Y K      L+  +   +     + +      +        + +R     ++   + S
Sbjct: 47  QRYLKYE--CGLSQQTIDRYLFEMRRFLEFLQQEELTVETAGPRELRMYLTHKAMGKSKS 104

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQ------QFK 183
           +    L  +R +F W   + ++  NP   ++ PK   K E       ++ +         
Sbjct: 105 TYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLNGL 164

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFM 242
                  +       +LY+G+R S+ C+   ++          T+K      + + D  M
Sbjct: 165 ERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQILPIADALM 224

Query: 243 KLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292
           ++L               FF   + + +               AG++    + AH +R  
Sbjct: 225 EILQFYWYEHMDSIDSDFFFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPRKRGAHLLRHT 284

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            AT     G    E+    G   V   E YT  + + +R  +    
Sbjct: 285 FATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPEGLRSAVSVLD 330


>gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
 gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM
           15053]
          Length = 330

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 15/279 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130
           + E+  S      +  +   +     +++    + + + IT  +I    R+    R+ T 
Sbjct: 55  LEEFLMSKALEGKSPGTVKRYRYELYRLLSYI-NKNVKDITDGNISGYMRTYKAIRQVTN 113

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +           F W   ++ +  NP   VE  K + +  +P+T E+ +       +  
Sbjct: 114 QTLKNVRAVYSSFFIWLRDRDRIRKNPMALVEAIKVEQKIRKPYTDEERELLL-RSCKTL 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE----LPDGFMKLL 245
           + +   EF   + +R S+      + +       I   K     TV           + L
Sbjct: 173 RDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMYMKEYL 232

Query: 246 AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302
                  +     +     ++  T      +     AGV ++  H  R+ +AT + + G 
Sbjct: 233 ESRTDSNQALFVSLKKPHGRLGKTGIEDIIRRTGQIAGVERAYPHRFRRTAATNALNRGM 292

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              E+    G   ++    Y    D+  +   + + +S+
Sbjct: 293 PVQEVAQLLGHAKLETTMVYC-SVDQAGVKYHHQKYLSA 330


>gi|53717770|ref|YP_106756.1| prophage integrase [Burkholderia pseudomallei K96243]
 gi|52208184|emb|CAH34115.1| prophage integrase [Burkholderia pseudomallei K96243]
          Length = 376

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R ++G   ++     G RIR      S    A   A   ++          +   T   
Sbjct: 5   KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127
            +  + K          ++         +  +    + R I  + I++ +E++       
Sbjct: 63  AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+    
Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
               +  R    F L +GLR S+        +              K G +I+V L +  
Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       + +        +    ++  ++    +AG+     H +R   A+    A
Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACMRAGLSGLRFHDLRHTWASWHVQA 293

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW +      Y  
Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317


>gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 316

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 78/281 (27%), Gaps = 29/281 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGV 123
           L++ + E+++   + +L+  +   + +  ++      + +   +          ++R   
Sbjct: 13  LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSEQEIVDLRDIREATVKAYLRYCK 72

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF 182
           ++R +   +    L  +R+ F +   +E +        + +P ++   I  +T   +QQ 
Sbjct: 73  KTRGNGVVTCNSKLHHLRIFFNYWQNEEVIEHKDNPVRKLKPAKEDTKIEVFTDYHIQQM 132

Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             ++           G +       LL +G+R  +      + +     ++         
Sbjct: 133 LRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARRQ 192

Query: 234 T------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                         E      K L   P    T                           
Sbjct: 193 QSIPITDKLTKEICEWRIFVEKELGSLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFKD 252

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           V  S H  R   A      G     L        +   E Y
Sbjct: 253 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 293


>gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX1341]
          Length = 377

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 111/370 (30%), Gaps = 46/370 (12%)

Query: 11  VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K   + G   Y F           + R               AL+    + +     +
Sbjct: 4   IKKYTKKDGSTAYMFNAYLGVDPVTGKSRRTTRRGFRTQKEAKLALSRLELEVDSKGFVK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           +  +T K +   +       ++   +    E  F   I+ + G+    K+T    +  V 
Sbjct: 64  QNYSTFKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVN 122

Query: 125 SRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKE 177
                  SA   L S+   +  +AV Q+ + INP   V  PK+        +     ++ 
Sbjct: 123 KWS-KEYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKDKTNETKKKQFLELSEL 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233
                ++  +   Q  L F  L ++G+R  +      + +  +   +   KT T I    
Sbjct: 182 KDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEY 241

Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                    +       +LL      K         +K N   +
Sbjct: 242 IISTPKTKASNRTIGLDDTTVSELIIWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLHY 301

Query: 270 SIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326
             +     + +   + S H  R   A++  ++GAT  ++    G   V+     YT    
Sbjct: 302 PEYINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTK 361

Query: 327 DRIRLGIKNS 336
              R  I   
Sbjct: 362 SSERKAIDKL 371


>gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1]
          Length = 328

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
             ++SE+  +      +  S   +       +   G    + ITT  +R+        +K
Sbjct: 51  DEILSEFLSAKRIEGCSEKSLNYYSKTITAALDSIG-KGIKHITTDDLRAYLTDYQAEKK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   +   K        +T E+++  +    
Sbjct: 110 SSKVTMDNIRRILSSFFSWLEDEDYIIKSPVRRIHNVKTSKTIKETYTDENLELMRDNCV 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +        +  N               V         L 
Sbjct: 170 E-LRDLAMIDMLASTGMRVGEMVLLNRSDIDFNERECVVVGKGDKERMVYFDARTKLHLQ 228

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                +            +  +++      +  +    K G+     H  R+  AT++ D
Sbjct: 229 SYLASRTDSDSALFVSLRSPHKRLTIGAIELRLREMGRKLGISKVHPHKFRRTLATMAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 289 KGMPIEQLQRLLGHQRIDTTLQYA 312


>gi|227876810|ref|ZP_03994919.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243]
 gi|227842707|gb|EEJ52907.1| phage integrase family protein [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 44/372 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65
           E+ + G+   Y+RKG  + +             +++A   +  K         E ++  +
Sbjct: 26  EKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLIDPELAEEELSPVK 85

Query: 66  KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
               T K     Y         +   +  S++S F   +    GD     IT + ++   
Sbjct: 86  ADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLINLITNQQVKDWY 145

Query: 124 ESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180
            S       A +        L   AV +  +             K  T+  R       Q
Sbjct: 146 NSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTTDNHRNIVATCDQ 205

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------- 223
             +   +   + R+A     +  LR  +      + ++                      
Sbjct: 206 VSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISVTRAVQYAAGFGY 265

Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                     I+       I  +L     K +A            +  +  +    +  F
Sbjct: 266 TVGPPKSEAGIRDIAVPPTIVADLKGHIAKYVAPDKESLLVHSPASLVKWYSNKSMNGHF 325

Query: 274 KAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                         + HG+R    T++  +GAT  ELM   G    +    Y        
Sbjct: 326 AKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHANAETVMIYQHATQDRD 385

Query: 331 LGI-KNSRRISS 341
             I +    IS+
Sbjct: 386 AAIAEKMSAISN 397


>gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 339

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 84/313 (26%), Gaps = 38/313 (12%)

Query: 64  PRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRK----SGDFD----YRK 113
            +  P +   L+  +         +L+  +  ++   F   +                  
Sbjct: 7   RKPAPPSFATLVQSFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPTTLSLAD 66

Query: 114 ITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +T   I   ++     R +T  S    L ++R   K+A R++  A+           K  
Sbjct: 67  LTPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTALQVVEHALGVPMKRF 126

Query: 170 GIRPWTKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               +     ++  +            + +L    L  +G R S+     V  +     +
Sbjct: 127 ERPMFEFLTREEMLAVIGAPGADWVSQRDKLLLALLYNTGARVSEVIGVKVGDVVLAPAA 186

Query: 224 IKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKA 275
                       +V L    +K++             +          M  +  +     
Sbjct: 187 CVHLHGKGRKQRSVPLWRSTVKVIRAWLRFNPELTPTSALLPNRSGQAMTRSNVTQRLAL 246

Query: 276 KATK--------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                       AG   S H +R  +A     +G     +    G ++      Y   AD
Sbjct: 247 AVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYV-EAD 305

Query: 328 RIRLGIKNSRRIS 340
              +  K   R+ 
Sbjct: 306 LA-MKEKALARLQ 317


>gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
 gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348]
          Length = 286

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 78/265 (29%), Gaps = 26/265 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------- 126
           + +S  +      +   + +     ++     D R +TT+ +   + S            
Sbjct: 18  FMESLKFSGAGQGTIKLYSTAIQDFLQFV-KKDPRSVTTQDVIDWIGSLNSRKGRSRVVD 76

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +   ++   ++ ++R   KW        +    S ER   + E I              
Sbjct: 77  KRGRSATIRSYVIAVRRFLKWLGVNVKPPVPRIRSPERMALREEDIVAL---------LS 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
                + ++    L+ +GLR S+        +     +  ++  K G    V        
Sbjct: 128 ACRRLRDKVIVSLLVDTGLRSSELLSLRRSDVDLERMLIRVRETKNGEERIVFFTSRTAT 187

Query: 244 LLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           LL       +    ++     ++        K    K G+     H +R   AT +   G
Sbjct: 188 LLRQYLRKTQDKESDDAPLFNLSYQALYKLIKRLGRKTGLTWLRPHVLRHTFATNAIRRG 247

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G K +   + YT   
Sbjct: 248 VPLPAVQRLMGHKDIKTTQIYTHLV 272


>gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50]
 gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50]
          Length = 319

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 109/329 (33%), Gaps = 35/329 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V +   +HG   Y      G+  RL      T +  Y              ++PR 
Sbjct: 1   MPPCVYE---KHGAYYY---VKGGKWTRLA-ADLPTALAEYAR----------RFDNPRG 43

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
               +  L+ +         L+ N+   ++    +I     +F   ++  KH+ +     
Sbjct: 44  G---MADLVEKVLTQVSPK-LSPNTIQQYKIAAARIKDAFAEFAPDQVRPKHVAALKVDM 99

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             TP+ A + L+ ++ +F +AV  + V  NPC+ ++R              D +    + 
Sbjct: 100 ADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGIKRHNEGKRKRY---ITDAEYAAIYH 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               + ++  + L  +G R  D        L  +    + +KTG  + V         + 
Sbjct: 157 HANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQEKTGAKLLVRWVPELRDAVV 216

Query: 247 MTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                             ++ K   +       ++     AGV + + H +R  S T + 
Sbjct: 217 RANALNGNVLAPTLFRTRSHGKGAPSYGTTRDRWREAVEAAGVQDANIHDIRAKSLTDAK 276

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             G          G  +    + Y +  +
Sbjct: 277 RQGKD---AQLLAGHASPAMTDRYIRLRE 302


>gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
 gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC
 gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327]
          Length = 336

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 84/302 (27%), Gaps = 50/302 (16%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
            +  +        +++  +  ++     Q         G      +  + +         
Sbjct: 19  WLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFM 78

Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    P S  + L S++  +++ +    ++ +P   V  P+   +  R  ++E+ +
Sbjct: 79  GHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEAR 138

Query: 181 QFKSFW--------------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           Q    +                     E  + R   E L   GLR S+        +   
Sbjct: 139 QLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLV 198

Query: 221 IFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFS 270
                 T K      V L +  ++ L      +  FF                    Q  
Sbjct: 199 HGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLY 258

Query: 271 IWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                + TK  +        K+ H +R   AT   + GA    +    G  ++   E YT
Sbjct: 259 PMLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYT 318

Query: 324 KG 325
             
Sbjct: 319 HV 320


>gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
 gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 87/275 (31%), Gaps = 18/275 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           +  + +  ++    +L   S   +++Y    ++   + + +++T + +R  + ++K    
Sbjct: 8   EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQ-NKNPKELTCQDVRVFLLAKKEEGL 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++   + +++R  ++       + I               +                +
Sbjct: 67  KATTLNLYNSAIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTASEIDRLLDAVD 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +  F  +  SG+R S+        +   N    ++  K        L    + +L 
Sbjct: 122 DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILT 181

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                K          K      +        +       + K  + H +R   AT   +
Sbjct: 182 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLME 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            G   H + A  G +     E Y   +++  +GI+
Sbjct: 242 QGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 276


>gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
 gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC
           29799]
          Length = 301

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 93/282 (32%), Gaps = 26/282 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL      +  +   G +  +S    E    +I           I    ++S   S   
Sbjct: 1   MTLGQWFPLWLDTYKRGVIRDSSLHQLELLARRIPADLMKRPLSAILPMDLQSFFNSFAA 60

Query: 129 TPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + S     +  T +  LF  AV  E  A NP   V+ PK + +    +T ++++    + 
Sbjct: 61  SASKSYVDKMGTLVNSLFAQAVENELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYA 120

Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQK 228
              +  R+  A   LL +GLR S+        L                +  +   + + 
Sbjct: 121 LGYTPLRVSVAVITLLLTGLRRSELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKT 180

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGVN-- 283
             ++ T+ L       L   P   E  F + +    +   FS     F     +A  +  
Sbjct: 181 ISSLRTIPLLPELSYKLHTLPKRSEFIFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDAR 240

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S H  R   AT+S  +GA    + A  G   +     YT 
Sbjct: 241 RLSPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTH 282


>gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
 gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299]
 gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4113]
 gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC508]
 gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171]
 gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-]
 gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str.
           TW14359]
 gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407]
 gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180]
 gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044]
 gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125]
 gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299]
          Length = 333

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR       +   +Y   L  S    E+ +    +   L
Sbjct: 4   RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 292

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 82/258 (31%), Gaps = 20/258 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP-- 130
           I+ Y+        + N+  ++ +     ++          +     + S +++  +    
Sbjct: 5   INNYKNYLFESGKSENTIYAYVTDVSLYLKFLNRKKIDLYESDKSTVMSYIQNLTNQGKS 64

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSF 185
             S  + + S+R  + +   +  +   P +  +  K   +  +  T     + ++  +  
Sbjct: 65  ERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKL 244
            S+G +     E +  +G++ S+     V  +  ++  +K          + +     K 
Sbjct: 125 CSKGIRDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYERLIPIGRSACKA 184

Query: 245 LAMTPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           L      +               +  K+         K  + KAG++K  + +  R   A
Sbjct: 185 LTEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244

Query: 295 TISADAGATAHELMATYG 312
                 GA    +    G
Sbjct: 245 VHLLQNGANVRAVQKLLG 262


>gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 291

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 83/269 (30%), Gaps = 13/269 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRK 127
           +   I E+++          +   +     +++      +   +T   +   +     R 
Sbjct: 3   VADAIEEFQREHKARGSTPRTVKWYGETLRRLLTDHLSENVEALTPFTLSRALNIAGERG 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++   +  ++R    W    E +  +P  + +RP  + +  +  T E+++       
Sbjct: 63  IRPATLANYDRALRGFTAWLHGVELLPRDPMKAKKRPVVRWQMKQVATPEEIRTLFELAR 122

Query: 188 EGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
              +       +L      GLR  +     +  +  +  ++K         V +     +
Sbjct: 123 RDKRYADRNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGERIVPMDRTTQR 182

Query: 244 LLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           LL             N      + + A   +      + +AG  +  + H +R  +AT  
Sbjct: 183 LLRRYVTHGRRGNHPNVFLFSGRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATTY 242

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G  T++    Y    
Sbjct: 243 LRNGGDVASLRRILGHATINTTALYLHLV 271


>gi|134288747|ref|YP_001111041.1| gp10, site-specific recombinase, phage integrase family
           [Burkholderia phage phiE202]
 gi|134131960|gb|ABO60708.1| gp10, site-specific recombinase, phage integrase family
           [Burkholderia phage phiE202]
          Length = 393

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R ++G   ++     G RIR      S    A   A   ++          +   T   
Sbjct: 5   KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPTVTWDA 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------ 127
            +  + K          ++         +  +    + R I  + I++ +E++       
Sbjct: 63  AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 118

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+    
Sbjct: 119 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 174

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
               +  R    F L +GLR S+        +              K G +I+V L +  
Sbjct: 175 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 234

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       + +        +    ++  ++    +AG+     H +R   A+    A
Sbjct: 235 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 293

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW +      Y  
Sbjct: 294 GTPLPILQQLGGWASYQMVLRYAH 317


>gi|19549014|ref|NP_599058.1| integrase [Enterobacteria phage SfV]
 gi|2465477|gb|AAB72135.1| integrase [Enterobacteria phage SfV]
          Length = 387

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHQK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAIQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVREMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 430

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 96/361 (26%), Gaps = 42/361 (11%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-----PRKKPTTLKWLISE 77
           Y F  G  RR+ +    E T   A   A        E  +        ++      +I  
Sbjct: 57  YRF-AGAQRRMAIGRWPEWTVTAARERARDLRREIDEGRDPLGERGELREAPRFSNMIDR 115

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------- 126
           Y        LA  +     S     +    G     +IT   +   +             
Sbjct: 116 YLDEHVPH-LAPTNASDQRSMLSKLVAPHWGRKLVTEITPHDVAKLLNIIAKGRARPSKE 174

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                       K TP  A +    +R +F  A+  ++ A NP    ++ + + E  R  
Sbjct: 175 KPNNRARKLQGPKPTPIRANRVGEVLRKMFTLAIGWDWRADNPASGFKK-RIENERERFL 233

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKT 229
           +++++ +           R A      + +G R  +  +A  +       +         
Sbjct: 234 SQDEIGKLAEALDAAKDQRGAGIIRLCMLTGSRVGEVRQARFEQFNLELCSWSKPAASTK 293

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVN-K 284
              I        +  +                          +   ++      A +   
Sbjct: 294 QRKIHRIPISAEVAAIVRQRGLVVPKGNPWLFPGDTPGQPVKEIRRFWINIQKDAKLPDV 353

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVV 343
             H +R   A++    GA+   +    G   +   + Y    D  +R G+     +    
Sbjct: 354 RIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASMFRPR 413

Query: 344 D 344
            
Sbjct: 414 P 414


>gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 395

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/331 (10%), Positives = 82/331 (24%), Gaps = 69/331 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----- 127
           I  Y         + N+  ++           G     +R++  +++   V   +     
Sbjct: 55  IERYLAYLTQIERSSNTVKAYAHDLKDWFVFLGVQGLGWREVRLENVAEFVAWLRRPPQL 114

Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          T S+  + L+++   ++ A R          + +    +  G +P
Sbjct: 115 RDGTVPVLPSVEHHCTESTVNRKLSALSAFYQHAARHGVDLGELLRAWQPAGGRGSGWKP 174

Query: 174 WTKEDMQQFKSFW--------------------------SEGSQPRLAFEFLLYSGLRCS 207
           +     +                                 +  + R  F  L  +G+R  
Sbjct: 175 FLHHISKGKPQARRAIVLSAQSKLPRVLSAAEVQTILDACDHLRDRFLFAVLFDTGMRIG 234

Query: 208 DSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDGFMKLLAMTP---- 249
           ++     + +      I                      ++ EL   +   L +      
Sbjct: 235 EALGLRHEDIAAAESQITVQRRVNDNGARSKSCAPRTVPVSAELVRLYADYLHLEYDDLD 294

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                   +       +  T      K    + G++   H  R  +AT     G     +
Sbjct: 295 SDYVFVNLWGRPHGHPLTYTAVYDLVKRLRRRTGIDFDPHWYRHTAATRMLRDGVPIEVV 354

Query: 308 MATYGWKTV-DQAETYTK-GADRIRLGIKNS 336
               G   +      Y    A+  R  ++ +
Sbjct: 355 SKLLGHADITTTTAVYGHLSAEDARKALEEA 385


>gi|294789961|ref|ZP_06755178.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Simonsiella muelleri ATCC 29453]
 gi|294482099|gb|EFG29809.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Simonsiella muelleri ATCC 29453]
          Length = 315

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 93/285 (32%), Gaps = 16/285 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGD 108
           +       +  +             +++ K             S E    +I +      
Sbjct: 1   MQLEHEIWQQQHLGVLPKHLWDEAAAKWIKEKQDK-------KSIEDDICRIRQLTALRG 53

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              + +  K I   V     + S+  ++L  +R +    V +    ++    +   K   
Sbjct: 54  RYLQDLDRKTIMKVVSELPCSNSTKNRYLALIRSILNKCVNEWD-WLSKAPKLTLYKEPK 112

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI 224
           + IR    ++ Q+    +      +    F L +GLR ++      + +    +      
Sbjct: 113 KRIRWLKPQEAQKLVHAFENLPYMQHMIIFSLVTGLRQNNVLNLKWEQIDLKRRIAWIYP 172

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
              K    + V L    +++LA+        F N+  Q + A      ++    +AG+ N
Sbjct: 173 DETKNSQALGVPLNQVALQVLAVRQKTTPFVFNNSKGQPVKAVSHR-IWRKGLKEAGISN 231

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              H +R   A+    +G     L    GW++++  + Y   + +
Sbjct: 232 FKWHDLRHTWASWLVQSGVPLLALKEMGGWESLEMVQKYAHLSSQ 276


>gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506]
 gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506]
          Length = 288

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 23/283 (8%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             +++ +    T   L++ +         +  ++  +  Y  + +  +G      +T   
Sbjct: 2   ALLSAEKTDTAT-DQLLNMWL-----HGKSKRTQSYYRLYAQRFLEFAG-KPLLLVTLAE 54

Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           ++    S +    + S+    + +++ L  +  + E +  N    +  PK          
Sbjct: 55  VQGFATSLEQNNLSASTQRTIMAAVKSLLSFGTKIEILPRNVGAPLPLPKAPDTLSERLL 114

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTI 232
            E             + +L  + L Y G R S+ C    +HL    N      T K    
Sbjct: 115 SEIEVLTMIDLESNLRNKLIIKTLYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKT 174

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--------FSIWFKAKATKAGV-- 282
            TV +P      L                QK +                +A A  A +  
Sbjct: 175 RTVLIPASLWVELQRLRGDSGENEPVFRSQKHSHDGQGHLQREWVHKIVQAAAKPAKITG 234

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S H +R   A+ + + GA  H +  T G  ++     Y   
Sbjct: 235 KVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRYLHA 277


>gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
 gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC
           51196]
          Length = 310

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 31/280 (11%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKH 128
           +  Y  +       + ++  ++          +      D   + +   HIR+ +     
Sbjct: 12  VEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKAMEHTHIRAYLGELYE 71

Query: 129 TPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              S   A + L ++R   KW  R   +  +P   V  PK      R  T EDM +    
Sbjct: 72  RGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRLVDA 131

Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239
            SE      ++ RL  E L   G+R ++     ++ +Q    +I    K      V + D
Sbjct: 132 SSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYVPIGD 191

Query: 240 GFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
              + L      +                      + ++         K  A   G+   
Sbjct: 192 AAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQGLPAD 251

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              H +R    T   + GA    +    G + +   + YT
Sbjct: 252 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYT 291


>gi|295107671|emb|CBL05214.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 356

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 99/338 (29%), Gaps = 39/338 (11%)

Query: 18  HGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +G      YY      +R +      +    A           +    +      T    
Sbjct: 9   NGTYYVQCYYRDARGSKRHKTKRGFSTEVEAAVW-------ESQFKSLNGGAMDMTFSEF 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           +  Y        +  ++ I+ E    D+++   GD     +    +              
Sbjct: 62  VEVYASEVKPR-IREHTWITKEYIISDKLVPFFGDMRMCDVRPIDVIRWQNELTEHRDAD 120

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFK 183
                P+        +  +F  A R   +  NP   V++   K    ++ WTK++  +F 
Sbjct: 121 GKPWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDEYLRFS 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               +      AFE L ++G+RC +           +   ++  K+              
Sbjct: 181 EAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLDSSRLRINKSYQSLRGVDTVTDPK 240

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                 T+ +P      +A     ++    +     +     +   +     +GV +   
Sbjct: 241 TPKSVRTIVMPAFLRDEMADFIEMRDDVAPDERLFAVTKHFLAHEMERGCKASGVKRIRV 300

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R    ++  + G +A  +    G + VD    Y  
Sbjct: 301 HDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAH 338


>gi|228474721|ref|ZP_04059452.1| integrase [Staphylococcus hominis SK119]
 gi|228271384|gb|EEK12752.1| integrase [Staphylococcus hominis SK119]
          Length = 378

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 115/368 (31%), Gaps = 52/368 (14%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F             +R                + L        ++N
Sbjct: 2   IKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQANGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121
           +      T K +   + +     ++  ++     + F   I+    D   + IT  H + 
Sbjct: 62  TEI---MTFKQIYELWLEQYR-NTVKESTYQQAMTTFKMMILPHFKDMAIKDITVPHCQK 117

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKE 177
            V     T S   +       +F++A+  + +  NP   ++ P     +K E ++ +T +
Sbjct: 118 VVNEWYRTYSETKKERIYASTIFEYAISLKIITDNPFNHIKAPRKKSNQKHETMKYYTSD 177

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNN 220
           ++QQF     +       F  L ++G+R  +        +                  + 
Sbjct: 178 ELQQFLELVKDNVLHHALFRTLAFTGIRRGELMALTWNDIDFTNQTLSVNKTLAEGLNHR 237

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP----------------IGKETFFINNDKQKM 264
            F    +   +I T+ + D  +++L                      +E F      +++
Sbjct: 238 QFIDTPKTRSSIRTISVDDKTLEVLKEWRTQQRVLSLKHGHNTSSKHQEIFTNVETNKRL 297

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           N    +        K    + + HG R    ++  +AG +  E+    G   +      Y
Sbjct: 298 NRVYANETLNLICKKNNFKRITVHGFRHTHCSLLFEAGLSVQEVQDRLGHGDIQTTMGIY 357

Query: 323 TKGADRIR 330
               ++ R
Sbjct: 358 AHVTEKQR 365


>gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           434/Bu]
 gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           L2tet1]
 gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu]
 gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDVKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   +  A
Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 290

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 83/261 (31%), Gaps = 20/261 (7%)

Query: 71  LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK 127
           L  ++ E+         L+ N+  S+     Q +    +       +    I + +   K
Sbjct: 2   LNNVVGEFLDFLTKNKKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLK 61

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 ++  + ++S++  + +   ++ +  +P   +  PK + +     T E +    S
Sbjct: 62  KKGKSQATVSRNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLS 121

Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +G + +   E L  +GL+ S+     ++ +  +   +  +       + +   
Sbjct: 122 IDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSH 180

Query: 241 FMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291
            ++ L              +        +K+         +    K   G   + + +R+
Sbjct: 181 AIEALKNYIEKGRKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQ 240

Query: 292 FSATISADAGATAHELMATYG 312
             A      GA    +    G
Sbjct: 241 SFAQHMLQNGADIRAVQEMLG 261


>gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
 gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22]
          Length = 416

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 95/309 (30%), Gaps = 18/309 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102
             Y +A   +    E      +  +         +++ H  S + +  +++       +I
Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151
             KS    + +I  K + S  +   + P           ++A  + +  +   K A    
Sbjct: 164 FAKSDTILFSQIDIKLVESFRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDG 223

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+ I+    V+  + +       T E++ +      +    R A  F   +G+R  D  +
Sbjct: 224 YLTIDISAKVKGIQERESRREYLTVEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                ++      +   T             +        ++   +       + +  + 
Sbjct: 283 LKWSEVEMFNGGYRLNFTQQKTKGVEYMPISEQAYSLCGEQQEGELLVFAGLPDPSWINR 342

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     AG+  + + H  R   AT+    G   + +    G   V   + Y K  D  
Sbjct: 343 PVKRWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEK 402

Query: 330 RL-GIKNSR 337
           +    +  +
Sbjct: 403 KEKATETIK 411


>gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1]
 gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3]
 gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98]
 gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1]
 gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3]
 gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98]
          Length = 377

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 110/370 (29%), Gaps = 46/370 (12%)

Query: 11  VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K   + G   Y F           + R               AL+    + +     +
Sbjct: 4   IKKYTKKDGSTAYMFNAYLGVDPVTGKSRRTTRRGFRTQKEAKLALSRLELEVDSKGFVK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           +  +T K +   +       ++   +    E  F   I+ + G+    K+T    +  V 
Sbjct: 64  QNYSTFKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVN 122

Query: 125 SRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKE 177
                  SA   L S+   +  +AV Q+ + INP   V  PK+        +     ++ 
Sbjct: 123 KWS-KEYSAFHLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKDKTNETKKKQFLELSEL 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233
                ++  +   Q  L F  L ++G+R  +      + +  +   +   KT T I    
Sbjct: 182 KDFLAEAKETLNFQDYLIFRVLAFTGIRKGELYALTWEDINISYKQLTVNKTLTRIGKEY 241

Query: 234 ------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                    V       +LL      K         +K N   +
Sbjct: 242 IISTPKTKASNRTIGLDDTTVSELIVWKKHQKQELLKYGFKTKSNDKQLIFHRKNNTLHY 301

Query: 270 SIWFKAKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA- 326
                   + +   + S H  R   A++  ++GAT  ++    G   V+     YT    
Sbjct: 302 PEHINFLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTK 361

Query: 327 DRIRLGIKNS 336
              R  I   
Sbjct: 362 SSERKAIDKL 371


>gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
 gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200]
          Length = 386

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 116/381 (30%), Gaps = 51/381 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPR--- 65
           +++ +T  G++ Y F+   G+                +Y  AL      ++ I       
Sbjct: 7   ISEYKTPSGQVRYKFKIYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKIAKGTYTG 66

Query: 66  --KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              K    K +   +  +     +   + ++ ++ F   I+   G+    KI+T   +  
Sbjct: 67  KENKKHKFKKIYEMWLANYELT-VKPTTLLNTKACFKNHILPVLGELYVEKISTFRCQKA 125

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177
           +       P    +  +    +  +AV  + +  NP   V +PK + +            
Sbjct: 126 LNKWFSDLPKMYRKVYSLSSKVLDYAVNNDLIVKNPMKRVIKPKMQKDKREFTNFYSKEE 185

Query: 178 -DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
            +         +  +  L F  L Y+G+R  ++       +     +I+  K        
Sbjct: 186 LNKYLDACKQKKNPRVYLFFRLLAYTGMRKGEALALKWSDIDFENETIRINKTLSLGTHN 245

Query: 229 ---------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265
                      +  T+++ +  +  L      +           +               
Sbjct: 246 SLVIGTPKTKASNRTIQVDEQTIYYLQEWRKRQRKELFKVGFNALTDDQLLFSNGNNQLI 305

Query: 266 -ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                  W K  A  A +   + HG R   A++  +AG    ++    G   +      Y
Sbjct: 306 RPWLVQYWNKTIAKDARLKHITVHGFRHTHASLLFEAGTPMQDVKERLGHSDITTTMNVY 365

Query: 323 TKG--ADRIRLGIKNSRRISS 341
           T    +++ +   K +R +  
Sbjct: 366 THVTKSEKKKTAEKFARFMEG 386


>gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 358

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 115/358 (32%), Gaps = 58/358 (16%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           Y  +    ++         +    + + L  S  +       R    TL  LI EY    
Sbjct: 17  YRLQADGNKQRFSKTFKTRSEARRFSAELEISAEE-------RSSSITLAALIDEYISEV 69

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSS 132
                +  +         +   K         T + I + +E R            +PS+
Sbjct: 70  TSQKRSKRTEEIRLRRLQR--DKLAAKTLSSFTNRTIENYIERRLSERAKNRDNYISPST 127

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ- 191
             + LT +  +F++A++ E   +NPC  VE+P+      R  + ED+++           
Sbjct: 128 VNRELTILSDVFQFAIKNELTDVNPCRGVEKPREPEHRERVASDEDIEKLLQASGWDGHT 187

Query: 192 --------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241
                      AF F   +G+R  +  +     L +N+  +  + T   +   V L    
Sbjct: 188 VPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWLGDNVLHVPAEATKTLSRRDVALSARA 247

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------------NKSAHG 288
            ++L +    +    I       N       F+    +AG+               + H 
Sbjct: 248 REILKLVMELEYEPRIFGGLNDHNRDTL---FRKVRDRAGLGPEYDSQNRLIKEGLNFHD 304

Query: 289 VRKFSATISA----DAGA---TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            R   AT +A    + GA       L    G K +   + Y + +       + ++R+
Sbjct: 305 GRATFATWAASPDPETGAPRLDVLALARQTGHKDLKMLQRYYRAS-----AEEIAKRL 357


>gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium
           botulinum F str. Langeland]
 gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. Langeland]
 gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum F str. 230613]
          Length = 330

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 47/293 (16%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130
           I E+       +L+  + +S+E       +      G  D +K+T K IR  +   K+  
Sbjct: 8   IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67

Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                       ++   ++ +++V F + + Q Y+  +   +++
Sbjct: 68  KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + K + +     T     +             +  L    LL +G+R  +     V+++ 
Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENID 187

Query: 219 NNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQ 268
            N           K      V       K L      K+ +  ++               
Sbjct: 188 MNYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           F    K  A +AG+ +   H +R   A     +G + + L    G  +V   E
Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300


>gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS---AIQFLTSMRV 142
             +R ++E+     +  +G  +  +   +T  HI +  +   +   S       L+++  
Sbjct: 36  KATRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLVNRSLSSMSIRHRLSALSS 95

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAF 196
           LF++   +  V  NP   V+RP  ++   +     D Q  +          +G + R   
Sbjct: 96  LFEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARELLEVPDGSSLKGKRDRAIL 155

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGK 252
             LLY  LR  + CR  V+  +     +   K          V L      L+       
Sbjct: 156 ATLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAASGLIHDYLDAA 215

Query: 253 ETFF--------------INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                             I   ++ +         +  + K G    AH +R  +AT + 
Sbjct: 216 GHDHEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNAL 275

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           D  A   ++    G   +     Y     R
Sbjct: 276 DHQADIAKVQEWLGHANIATTRIYDHRRTR 305


>gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
 gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563]
          Length = 389

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 110/371 (29%), Gaps = 55/371 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES---TFIPAYMSALTGSTPKREYI 61
           +++  ++ K+     K +Y  +   G               F     + +     K+E++
Sbjct: 1   MKISKYIDKKTN---KPMYRVKGYLGTDPITGKKIYKNMSGFAKKRDAEIAERKAKQEFL 57

Query: 62  NSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKH 118
            +          + +   + ++    ++  ++         + I+   G     KIT   
Sbjct: 58  KAGTTNTDRLKFEEVAKIWLETYEMSNIKESTFQIQRDIVLNHIVPNLGKHYVDKITPIM 117

Query: 119 IRSGVES--RKHTPSS-----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +S V    R+ T  S     A + L   R   K         +       + K +    
Sbjct: 118 CQSLVNKFTREFTNYSNMIGLATRILEYARKTLKLIDDNPMKDVERPRKARKLKSERYEA 177

Query: 172 RPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +++E++  F          +       + ++G+R  ++C    +       +I  ++ 
Sbjct: 178 PYFSREELVYFLECAKKMNDPKAYAIIHLMSFTGIREGEACGLMWKDFDEVNNTITIERA 237

Query: 230 G-----------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--- 269
                             +  T+ + D   ++L      ++              QF   
Sbjct: 238 IIRGKNFEKKVGTTKSSASERTISIDDETAQVLRNWKSKQKEIMFMLGYNTSGKNQFMFT 297

Query: 270 ------------SIWFKAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                           +A   K    G   +AHG+R    T+  +AG +  E+    G +
Sbjct: 298 NDKNEIYQPLYAYDRIQAVCKKFPEIG-KMTAHGLRHTHVTLLLEAGMSIKEVQERLGHE 356

Query: 315 TVDQA-ETYTK 324
                 E Y+ 
Sbjct: 357 NTKMVLEVYSH 367


>gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
 gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii
           23-P]
          Length = 374

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 77/268 (28%), Gaps = 25/268 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISF--------ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           + +++K      L+ N+  ++             +                 I    +S 
Sbjct: 103 VRKFKKWLFQKRLSKNTVHTYVTVTATYIRYALLKKADLFSMKTVAAFNYDSIFVPNKSI 162

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +      QF+  ++  F +            + +ERP+++ +     +  +++      
Sbjct: 163 SYQ----NQFIGGIQKFFAYKG-----YAYEEIPIERPRKEKKLPIILSGAEIKA-IFST 212

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
               + +     L  +GLR  ++    V  +         +  K        L   F+K+
Sbjct: 213 ITNLKHKALLSLLYSAGLRIGEAITLEVTDIDCQRMLIYGRQAKGKKDRYTLLSPVFLKI 272

Query: 245 LAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           L    +         +       +        K    KAG+ K  + H +R   AT   +
Sbjct: 273 LRDYYVAYRPKNSLFEGANGSTYSDASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLE 332

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327
            G     +    G  +      YT    
Sbjct: 333 KGTDIRYIQELLGHSSPKTTMIYTHVTQ 360


>gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 379

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 92/276 (33%), Gaps = 29/276 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD-----YRKITTKHI------------RSGVESRKHTP 130
           + ++  + +     II     +D       KI   +I            +     +    
Sbjct: 101 SGSTNRAKKDILQAIIHHLKRYDPQGILLEKIDKSYILGFIEYLKKAKQQHHKAEKGLHT 160

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWS 187
           ++ + +   +R     AV +EY++ NP   ++    PK         T  ++++      
Sbjct: 161 NTQLYYFKMLRYCLNHAVSEEYISENPINKIKNEEKPKNHKREREYLTISELKRLVRTPF 220

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVELPDGFM 242
                + AF F  + GLR  D      +++  +           QKT   I++ L    +
Sbjct: 221 YNKLLKQAFLFSCFCGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQEAISLPLSHEAV 280

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
           K L    + ++   +      ++ +         A +A +  + + H  R   AT+    
Sbjct: 281 KYLPERDMAQDDDTVFAGLISLSRSNI--ILDKWAKQADIQKHITFHVARHTHATMLLTL 338

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           GA  + +    G   +   + Y K  D  ++     
Sbjct: 339 GADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAIAL 374


>gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus]
          Length = 390

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 100/387 (25%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y          G+   +          A   A       R   +      +
Sbjct: 4   YEKRGSTWRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMIERQLR-TGDYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++ K      + V+S  + E      I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWLKQY-ANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISAQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222
                               F  L Y+G+R  +        +                  
Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCXLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA      +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKNTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|307701539|ref|ZP_07638556.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
 gi|307613218|gb|EFN92470.1| site-specific recombinase, phage integrase family [Mobiluncus
           mulieris FB024-16]
          Length = 397

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 105/384 (27%), Gaps = 44/384 (11%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK---- 57
                   F + E+ + G+   Y+RKG  + +             +++A   +  K    
Sbjct: 14  KKRKSRKGFGSIEKLKSGRYRAYWRKGSIKVLADETFPNRQLASDWLAAQQVAIAKGLID 73

Query: 58  ----REYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFD-QIIRKSGDFDY 111
                E ++  +    T K     Y         +   +  S++S F   +    GD   
Sbjct: 74  PELAEEELSPVKADVPTFKEWKETYLARREKEGGMKPKTIQSYKSCFKAHLEDTFGDMLI 133

Query: 112 RKITTKHIRSGVESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKT 168
             IT + ++    S       A +        L   AV +  +             K  T
Sbjct: 134 NLITNQQVKDWYNSFDGKKLGARKSTYRVFSALMNAAVDEGLIDASPVHVKGAVSKKPTT 193

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----- 223
           +  R       Q  +   +   + R+A     +  LR  +      + ++          
Sbjct: 194 DNHRNIVATCDQVSRLAEAMPDEYRIAVLLAFWCSLRFGEITELRRKDVRFKGEKAVISV 253

Query: 224 ----------------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                                 I+       I  +L +   K +A            +  
Sbjct: 254 TRAVQYAAGFGYTVGPPKSEAGIRDIAVPPTIVADLKEHIAKYVASDKESLLVHSPASLV 313

Query: 262 QKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  +    +  F              + HG+R    T++  +GAT  ELM   G    + 
Sbjct: 314 KWYSNKSMNGHFAKAKRAVPDLDQRFTFHGLRHSGLTLAGQSGATLAELMHRAGHTNAET 373

Query: 319 AETYTKGADRIRLGI-KNSRRISS 341
              Y          I +    IS+
Sbjct: 374 VMIYQHATQDRDAAIAEKMSAISN 397


>gi|156935256|ref|YP_001439172.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533510|gb|ABU78336.1| hypothetical protein ESA_03107 [Cronobacter sakazakii ATCC BAA-894]
          Length = 387

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 99/356 (27%), Gaps = 54/356 (15%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R       F    G+R +           A                       T +    
Sbjct: 6   RGETWYASFTLPDGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGETPDMTFEEACV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130
            + +          S    +S     ++       + IT   I + ++   +        
Sbjct: 65  RWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQMKDITETRIYNAIQKMTNRRHEENWK 120

Query: 131 -----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                  ++    L+ ++ L + A  +E+  ++    V+ P+ K
Sbjct: 121 LREEALRKKGKPVPPYVPRPAATATKATHLSFIKALLR-AAEREWKMLDKAPIVKVPQPK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + IR     + ++      +    +   EF L +GLR S+      Q +          
Sbjct: 180 NKRIRWLEPHEAKRLIDECPD--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWIH 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSI 271
            +  K+   I V L D   ++L         +     +                    + 
Sbjct: 238 PEQSKSNQAIGVALNDTACRVLKRQIGNHHKWVFVYKESCTRPDGTKAPTVRKMRYDANT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y   A
Sbjct: 298 AWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLA 353


>gi|326797743|ref|YP_004315562.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326548507|gb|ADZ76892.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 413

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 22/288 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128
            ++        N+   + +    +           D + R I    I           + 
Sbjct: 120 MEALLGKGFKPNTLKGYNTSVAHLTSYLEKCHGETDIEIRHIDHAFITGYEFFLRSDMEC 179

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--EDMQQFKSFW 186
           +  SA +++  +R +    +   ++  NP +  +   +  E         + + Q +   
Sbjct: 180 SAVSAAKYMKHLRKIINQCLAHRWITENPFVFYKTKAKPREKEFLTPDELDRIAQKEFSI 239

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GF 241
           +  S  R  F F  Y+GL  +D  +     +   I       T    T    +       
Sbjct: 240 TRLSHVRDIFVFCCYTGLSYADVRKLQKTGIAKGIDGRLWVLTSREKTETSSNIPLLPQA 299

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-A 298
           ++++                  ++  + + + K  A   G+    + H  R   AT    
Sbjct: 300 LEIIGRYADYPPCVAKGMVLPVLSNQKMNSYLKEIADLCGITKKLTFHMARHTFATTVTL 359

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
                   +    G   +   + Y K  D          ++   +   
Sbjct: 360 ANNVPIETVSKMLGHTNIKTTQHYAKLLDTRISSD--MEKLKEKLGFR 405


>gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 402

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 102/387 (26%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y          G+   +          A   A       R   +      +
Sbjct: 16  YEKRGNTWRYRISLGKDAKTGKYKYISNSGFKRKSDAKHHAEMVERQLR-TGDYIAPSTS 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K + +++ K      + V+S  + E      I +  +   + I     +  V     +
Sbjct: 75  TFKQVANDWLKQY-ANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHDYQRFVNDISAQ 133

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     + S  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 134 YSKNYIDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 193

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222
                               F  L Y+G+R  +        +                  
Sbjct: 194 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253

Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 254 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 313

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 374 IYAKITNSYKKDASQKFSKLMENVSKD 400


>gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P]
 gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P]
          Length = 350

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 95/335 (28%), Gaps = 36/335 (10%)

Query: 12  TKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++     K      Y     G R R  +  +   +      LT    ++          
Sbjct: 3   VRKTDHKTKPWLSEIYPDGRDGPRKRKRFATKGEALAWESHMLTAKPWQQTEAVVATGDE 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             L  L++ +    H  +LA             +     +    + T++   +  E R  
Sbjct: 63  RRLSDLVAAWFG-RHGQTLADG--ERRRDKLVWLCEALDNPIATEFTSELFSAYRERRLA 119

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175
                     + TP++  +    ++ +F    R   +   NP   + + K +   +   +
Sbjct: 120 GELYVPGQRKQVTPTTINREQLYLQAVFNELARLGVWSGGNPLADLRQYKVQESELAYLS 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +++++Q      E     L     L +G R S+  +     +     +    K     TV
Sbjct: 180 QDEIEQLLDACKEQRDLWLIVMLCLSTGARWSEIEKVSRSQIGMGRITFTKTKGKRNRTV 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291
            +    + +L             +             F+    +AG+      S H +R 
Sbjct: 240 PVAPWLLAMLPRRTGRLFDDCYAD-------------FEKAIRRAGIKLPAGQSTHVLRH 286

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     L    G   +     Y   A
Sbjct: 287 TFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFA 321


>gi|32469432|ref|NP_862840.1| gp1 [Streptococcus phage SM1]
 gi|32441584|gb|AAP81883.1| gp1 [Streptococcus phage SM1]
          Length = 375

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 119/373 (31%), Gaps = 52/373 (13%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+      ++ I++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQAKNQAAILLQEKIKKKISTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--P 130
           + + +  S    ++  +++ ++      + ++   +     I  ++I+S +E+   +   
Sbjct: 68  IYNLFYNSWS-KTVKASTKHNYTFVDATMKKEIPSNTLLANIDRRYIQSKIENIIDSKGY 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKEDMQQFK 183
            +A +  + ++ +F +AV+  Y+  N       PK+         +  +  T ++++   
Sbjct: 127 HTAYRVRSRLKSIFDYAVQYSYIENNEVNYTVIPKKPETLEDIEKKRNKFLTMQEIKALI 186

Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234
              +     +        L  +G+R  +     ++++      I+       I       
Sbjct: 187 DALNNKPYQQKYADMVTVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSINKIKTLP 246

Query: 235 -------------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                      +           F +      +    F    K 
Sbjct: 247 KTAKSIRTILVSDAVIKAIQRQVVRLTERYQPLKDDDYIFCLEVWNSPITLPSFIQIIKK 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
              KAG+ K  S+H  R    +  A+AG     +M   G        E Y+         
Sbjct: 307 YGAKAGIEKNLSSHIFRHSHISYLAEAGLPIKSIMDRVGHANAKMTLEIYSHTTQ----- 361

Query: 333 IKNSRRISSVVDS 345
                ++   +DS
Sbjct: 362 -DMEDKLVKTLDS 373


>gi|288905839|ref|YP_003431061.1| integrase [Streptococcus gallolyticus UCN34]
 gi|288732565|emb|CBI14137.1| putative integrase [Streptococcus gallolyticus UCN34]
          Length = 376

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 113/373 (30%), Gaps = 54/373 (14%)

Query: 18  HGKIIYYFRKGHGRR-------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +GK  YY +  + R+       + L      T      +         +  +    +  T
Sbjct: 8   NGKYRYYQKYWNIRKECWLQVSVTLK---SKTRAVQAEAKRILEDKISKKNSVRLLQAET 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +K L  E+        +  ++  +     +  I+  G+    +I +  +++ + ++  + 
Sbjct: 65  VKELYEEWLVIRKM-EVKPSTLQTQMGIMNGFIKIFGNEKLTRIKSAALQTYLLAKDWSY 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQFK 183
                    +  LF +A    Y+  NP   V  PK K        +     +++ ++ + 
Sbjct: 124 GYRNLVKVYLSSLFDYAKTVGYLVDNPMDRVVLPKYKVTQEEIELKREHYLSRQQIRLYL 183

Query: 184 S---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------NIF 222
           +      +     +  EFL  +GLR  ++       +                    +  
Sbjct: 184 NILDTEGKNPIFNILVEFLYLTGLRIGEAQALMWSDIDFETKILTVRHTVQRANKKSDYR 243

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAK 276
               +   +   V      +KLL             +               F+++ +  
Sbjct: 244 ITTPKTIHSYRKVYFNSRVVKLLDELKCLTSVVSDKDLVFTNGRGDFFGLDAFNLYIQRY 303

Query: 277 ATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                +        ++H  R    ++ A+ G    E+M   G        + YT   +  
Sbjct: 304 FDNQKIGKPDNFKLTSHVFRHSHVSLLAELGFHVREIMERVGHSDEKTTIQIYTHVTE-- 361

Query: 330 RLGIKNSRRISSV 342
           ++   +  ++ SV
Sbjct: 362 KMKQNSFEKLESV 374


>gi|217979222|ref|YP_002363369.1| integrase family protein [Methylocella silvestris BL2]
 gi|217504598|gb|ACK52007.1| integrase family protein [Methylocella silvestris BL2]
          Length = 428

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 101/363 (27%), Gaps = 49/363 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES------------TFIPAYMSALTGSTPK 57
            +   + RHG      R     +  +     +            TF  A   A   +  +
Sbjct: 36  HLGYRKGRHGGKWVMRRYLGNEKYEVETIAVADDRDDADGKDILTFNEAQAKAREIAKAR 95

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           R+   +    P T+  ++  Y K A     + +   S     + I    G      +T +
Sbjct: 96  RQE--ASGAAPITISTVLDAYLKQAEAQH-SKSVSDSRNRIENHIRPAFGAMLASDLTQE 152

Query: 118 HIRSGVESRKHTPS---------------------------SAIQFLTSMRVLFKWAVRQ 150
            I+  +++   +P                            SA + LT +R       R 
Sbjct: 153 AIQKWLKALADSPRNVRGKAGTVSRALAKPKTDDEKRRRRASANRTLTILRAALNQGFRS 212

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             +  +      +P R+ +  R       +  +   +   + R      L++G R  + C
Sbjct: 213 GKITSDTVWRTIQPFREVDAPRVRYFTQDEVRRLVNAAQGEFRSLVNAALFTGCRYGELC 272

Query: 211 RAGVQHLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  V              S   +    ++T E    F +L A  P         +     
Sbjct: 273 RLQVGDFNPDAGTVFVGQSKSGKARHVVLTEEGQGFFRQLTAGRPTNALMLSRADGAPWG 332

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
            + Q     +A           H +R  +A+ +   G     +    G       E  Y 
Sbjct: 333 ASHQIRPMAEACKAAKIAKAGFHILRHTAASHNVMGGVPMPVVAKNLGHADSRMTEKHYA 392

Query: 324 KGA 326
             A
Sbjct: 393 HLA 395


>gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRSHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|257437573|ref|ZP_05613328.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|257199880|gb|EEU98164.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Faecalibacterium prausnitzii A2-165]
 gi|295109631|emb|CBL23584.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 434

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/382 (9%), Positives = 95/382 (24%), Gaps = 61/382 (15%)

Query: 15  RTRHGKII---YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             R G +      +    G++    +  +  +           T      +  +   ++ 
Sbjct: 19  TGRPGTVYDVNIKYTAPDGKKKSYAKKGFATKKEATQHEAEMKTKLQNPGQIASITSQRK 78

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES-- 125
            T+   ++++ +S    +L  ++   ++    + I    G     ++T   +    +   
Sbjct: 79  QTVASYLNDWVESYARVNLRPSTYDGYKKTIANYINPYIGGVALNQLTPAMVDKMFQQII 138

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +   PS+A      + V    A +  Y+  N          K++        +  +   
Sbjct: 139 DKGLKPSTAAGAKRVLSVALSHARKYRYIETNAAKDTLTKFGKSDKTPDPYTPEQVKALM 198

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------------- 224
              EG+   +        G+R S+      +++     +                     
Sbjct: 199 QRVEGTVWEMPVILGGLYGMRRSEILGLRWRNVDLENNTFDVSEQLPFKVPPKTKVIEEM 258

Query: 225 ----------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                           +          E      +         +      D   ++A+ 
Sbjct: 259 APPKSNGRTLPITELARPFFLKQFAMQEAQREQAEKDGKPYYDNDLVVAKPDGSPISASW 318

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK------TV----- 316
            S  F        +     H +R  +AT         + +    G        ++     
Sbjct: 319 VSSQFGKLLEDLDMPHIRFHDLRHTAATNMHQLTGDFYTVGEVLGHTLAGIGVSLGLSMN 378

Query: 317 --DQAETYTKG-ADRIRLGIKN 335
                  Y     +R +  +  
Sbjct: 379 FEAVTARYVDVRLERKKEVLDA 400


>gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 270

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 17/236 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   +++  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271
           +I    K      V   D   K L                ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +    +AG+      H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|120603607|ref|YP_968007.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120563836|gb|ABM29580.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 417

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 111/372 (29%), Gaps = 47/372 (12%)

Query: 4   SLRLPPFVTKERTRHG-----KIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTP 56
             + P    +E  R G     ++ Y   K  GR I  ++         PA  + +     
Sbjct: 40  KTQYPGVYYREAQRIGGTGTERVYYALYKRDGRLIETKIGRQFSDDLTPAKAALIRAQLI 99

Query: 57  KREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKS 106
           +                 P T+  L  EY           N      +  ++    +R  
Sbjct: 100 EGRRSTRKELRQAEMDNAPWTILTLWEEY------KRRKPN-LKGIITDQNRFEVHLRHL 152

Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVE 162
            +    +ITT  + +   S  ++   P +    +  +R +  +  ++  +  +  C   E
Sbjct: 153 QNMKPEEITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGLITPSQICAHFE 212

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN 220
            P    +     T E +    +        +        LY+G+R  +      +H+  +
Sbjct: 213 MPILNNQKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWH 272

Query: 221 IFSIKTQKTGT-------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              I                     +   + L ++    ++ ++   K            
Sbjct: 273 RGFINIVGRDDGLGAKSGQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRLVDIRKQA 332

Query: 274 KAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
            A   +AG+  S    HG+R   A++ A  G  + +EL      K+    + Y    D  
Sbjct: 333 DALKKEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAMTQRYAHLRD-- 390

Query: 330 RLGIKNSRRISS 341
                  ++ S 
Sbjct: 391 ----DALKKASQ 398


>gi|31580573|gb|AAP51266.1| integrase [Staphylococcus aureus]
 gi|31580575|gb|AAP51267.1| integrase [Staphylococcus aureus]
 gi|31580577|gb|AAP51268.1| integrase [Staphylococcus aureus]
          Length = 378

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 111/381 (29%), Gaps = 52/381 (13%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   + G   Y F             +R                + L        ++N
Sbjct: 2   IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +     TT K +   + +           +     +   I+    +   + IT  + +  
Sbjct: 62  NEI---TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRV 118

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKED 178
           +                   +F++AV  + +  NP    ++P++K          +++++
Sbjct: 119 INKWNDKYKDMKAIRIYTSNVFEYAVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE 178

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
           +Q F SF  +       F  L ++G R  +        +     +I   KT         
Sbjct: 179 LQTFLSFVEDNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP 238

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                       T+ + D  + +L    + + T  +      +   QF            
Sbjct: 239 IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY 298

Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
               +        K    +   HG R    ++  +AG T  E+    G   +      Y 
Sbjct: 299 PEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYA 358

Query: 324 KGADRIRLGIKNSRRISSVVD 344
              ++ R   + + + ++ ++
Sbjct: 359 HVTEKQR--DQVAEKFANYIN 377


>gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
 gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638]
          Length = 395

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 82/319 (25%), Gaps = 44/319 (13%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQII--- 103
               T K        +   T        I EY         + N++ S+     +     
Sbjct: 83  REAKTEKERVKRVEMQARKTFSEAGGVFIEEY---------SKNNKKSWRHDCTRFRLHL 133

Query: 104 -RKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPC 158
               G      +  KHI         +  +  +    LT  R +  +A+++ ++   NP 
Sbjct: 134 QPVIGQIYLDDLRLKHIEELKSVVTKKGLSKGTIKHCLTLARQICYYAIKRGWLTGDNPV 193

Query: 159 LSVERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
             ++ PK     +R  +  +E      +     S+        LY+G+R  +      Q 
Sbjct: 194 KGIKFPKPNNRRLRYCSVEEEYDFFEMAVNMGYSECHDICLLSLYTGMRMGEIFALTRQD 253

Query: 217 LQNNIFSIKTQKTGT---------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265
           +      I  +                  + +    +L       +        +     
Sbjct: 254 IDLVENRIIIKGRSGADDGPKAGGSRVAYIIEKIRPMLENRLALFQGREALIFPKPNGGI 313

Query: 266 ATQFSIWFKAKATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                  F       G         +   AH  R   A+     GA    +    G   +
Sbjct: 314 RKCIGPDFATLMKHLGWNDGVTDRRLRFCAHCFRHTFASRLIAKGAPLTVVKKMLGHSNI 373

Query: 317 DQAETYTKGADRI-RLGIK 334
                YT   D   R   +
Sbjct: 374 QTTMRYTHTQDEQCRDAAQ 392


>gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 422

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 103/353 (29%), Gaps = 41/353 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-----YINSPRKKPTTLKWLISEY 78
           Y   G  RR+      E +   A   A                    ++   +  LI+ Y
Sbjct: 38  YRYAGRQRRMTFGRWPEWSVSAARTRAKELRRDIDAGGDPLANRDALREAPRITDLITRY 97

Query: 79  RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR----------- 126
            +  H   LA  +     S   +      G     ++++  +   +              
Sbjct: 98  ME-VHLTHLAKLNAADQRSMMAKFIAPAWGRMLVTEVSSYDVELLLNRVAEGRARPAKAK 156

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      K TP  A +    +R +F +AV+  +   NP +    P+ +T   R  +
Sbjct: 157 PNNRARKLQGSKPTPVRANRVGEVVRKMFAYAVKWGWREDNPAMGFR-PRMETPRERYLS 215

Query: 176 KEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTG 230
           +E++ +  +    +E ++        + +G R  +  +A  +       S          
Sbjct: 216 QEEIARLATALDRAEDTRAANIIRICMLTGARVGEVRQARFEDFNLEHLSWTKPATTTKQ 275

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGV-NKS 285
             +          ++                          +   ++K    +AG+ +  
Sbjct: 276 RRVHRVPISDDAAVIVRQRRQAVYPGCPWLFPSDTPGHPVQEVRRFWKRIQREAGIEDVR 335

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
            H +R   A++    GA+   +    G   +   + Y    D  +R G+    
Sbjct: 336 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVA 388


>gi|154250813|ref|YP_001411637.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154763|gb|ABS61980.1| integrase family protein [Parvibaculum lavamentivorans DS-1]
          Length = 389

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 104/360 (28%), Gaps = 31/360 (8%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LP F  +      K        + +R  +      +   A  +A      +   +     
Sbjct: 26  LPGFGVRVSQGGVKSFVVVHGRNRKRTTIGRYPTISLQDARKAAKQILAER--TLGKHEA 83

Query: 67  KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
            P   +  +  +  +    +     +R   +       +          I  + I   ++
Sbjct: 84  PPIDFEAGLKLFLAAHFPENYPKPRTRAETKRQLEKHFLPSLRHEKLEHIQAREISRIID 143

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
               TP  A      +R+ F WA R+ YV  +PC  ++ PK+     R  T+++++    
Sbjct: 144 KMHKTPGEARHAFAVIRLFFNWAFRRGYVDRSPCERLQAPKQSLPRDRVLTQDEIRTVLG 203

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDG 240
                 +      + LL +G R  +        +  +  +I    T              
Sbjct: 204 HARERDTTFNSIVQLLLLTGQRRGEIASLQADWIDFDSRTITLPATVTKNKRQHAFPFGE 263

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA-----------------TKAGVN 283
             +++    + +        ++  +A + ++                           ++
Sbjct: 264 MAEVILKRALLQAQQSREERREYEDADEKALLLFPARGKHTAFDGWSKGKPNFDKGCPID 323

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ---AETYTKGA--DRIRLGIKNSR 337
             + H +R+  AT  A  G   H         +         Y + A  D +R  I+   
Sbjct: 324 HWTLHDLRRTCATNLAALGVPVHVTEKLLNHISGTTSGIVAVYQRHAYMDEMRDAIERWE 383


>gi|54294005|ref|YP_126420.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens]
 gi|53753837|emb|CAH15303.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens]
 gi|307609834|emb|CBW99352.1| hypothetical protein LPW_11301 [Legionella pneumophila 130b]
          Length = 414

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 111/347 (31%), Gaps = 30/347 (8%)

Query: 21  IIYYFRKGHGR-RIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLK 72
            IY ++ G    +I L +    +   A            +G  PK+       KK  T+ 
Sbjct: 39  WIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTMD 98

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
            LI+ + +     +         +     II   G  +  KI    I + +++  ++  P
Sbjct: 99  QLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAP 157

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTKEDMQQF 182
             A + L+S++ +F +A+ +  +  NP  +++        +P  +   +           
Sbjct: 158 IHANRVLSSLKQVFNYAISRGSLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLN 217

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   Q + A + +L +G+R ++   A   H              T   + +     
Sbjct: 218 SDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLS 277

Query: 243 KL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
           +L       L                + ++        +    + G+   SAH +R+  A
Sbjct: 278 ELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFA 337

Query: 295 TISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
           T   +        +    G K      TY K     + +  ++   +
Sbjct: 338 TQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSK 384


>gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US]
 gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 270

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 17/236 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   +++  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271
           +I    K      V   D   K L                ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +    +AG+      H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
          Length = 408

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/398 (12%), Positives = 111/398 (27%), Gaps = 72/398 (18%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQERWEYFVSNGRNNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +  +    ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENSQKMTISKFMNIWINAYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  YV  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDDFMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K       +     +                                   +L M
Sbjct: 242 NILTFDKQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              ++    G K V   E Y   +  ++   +   ++ 
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSPEVK--ERAVNKLE 397


>gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
 gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149]
          Length = 288

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 87/275 (31%), Gaps = 18/275 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           +  + +  ++    +L   S   +++Y    ++   + + +++T + +R  + ++K    
Sbjct: 8   EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQ-NKNPKELTCQDVRVFLLAKKEEGL 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++   + +++R  ++       + I               +                +
Sbjct: 67  KATTLNLYNSAIRFFYR-----NVLHILWDDITVPRMILEHKLPTVLTASEIDRLLDAVD 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLA 246
             + +  F  +  SG+R S+        +       +++  K        L    + +L 
Sbjct: 122 DIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKNRMDRYTILSKRCLDILT 181

Query: 247 MTPIGKETFFINNDKQKMNATQFS-----IWFKAKATKAGVNK--SAHGVRKFSATISAD 299
                K          K      +        +       + K  + H +R   AT   +
Sbjct: 182 QYWFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLME 241

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            G   H + A  G +     E Y   +++  +GI+
Sbjct: 242 QGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQ 276


>gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7]
 gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7]
          Length = 378

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 98/367 (26%), Gaps = 47/367 (12%)

Query: 15  RTRHGKIIYYFRKG---HGRRIRLPYPHES------TFIPAYMSALTGSTPKREYINSPR 65
             R          G   +G+++                             +     S  
Sbjct: 5   TKRGNTFRIRVFVGCDMNGKQLVKSTTFTPPVGVTEKKAEKLAQEYAFEFERHCKGYSLL 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            +      L   Y  +     L  ++  ++   +   I    G+   + I    +   ++
Sbjct: 65  NENMRFSELADWYFTNYAPQELKESTVYTYWGQYKNHIEPVLGNIKVKDINAPRLTQIMQ 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S    P++  +    ++ +F+    Q ++   PC +V  PKRK        +ED  +   
Sbjct: 125 SYDLNPATVKKLYVIVQSIFRRGAEQGFIRDTPCRNVVLPKRKKSRKNKALEEDKLKRFM 184

Query: 185 FWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233
            + E        +   + LLY+G+R  +      + +     +I    T T I       
Sbjct: 185 AYLESKPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTDIGGKHELT 244

Query: 234 -----------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                    +  +     L       E  F++      +     
Sbjct: 245 DPKTESSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGNYRDRNSVY 304

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
              K         + + H +R  +AT+  ++G     +    G   V+     Y     R
Sbjct: 305 QSLKRFTKGTEFEDMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADVL-R 363

Query: 329 IRLGIKN 335
                  
Sbjct: 364 KTKARTA 370


>gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 376

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 91/368 (24%), Gaps = 71/368 (19%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           ++  + +  T              K         + TT+  L   +  +     L  N+ 
Sbjct: 1   MKRRFVYARTLDDLREKEKRIQKDK-CDGIKTEARYTTIDELFDLW--ANMKRGLKNNTF 57

Query: 93  ISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWA 147
            +++  ++       G      +    I+       + R   PS+     T +  + + A
Sbjct: 58  ENYKYMYNTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIA 117

Query: 148 VRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFL 199
           V  +++  NP  +      +    ++E  R  TK + +    F             F  +
Sbjct: 118 VDDDFIRNNPSDNVLRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPAYEHWYPVFAVM 177

Query: 200 LYSGLRCSDSCRAGVQHLQ-------------------------NNIFSIKTQKTGTIIT 234
           + +GLR  +        +                                 T+   ++  
Sbjct: 178 IGTGLRVGEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQ 237

Query: 235 VELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKATK 279
           V +     +                        +  FIN   Q  +    +   +     
Sbjct: 238 VPMLGFVREAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRD 297

Query: 280 AG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                            + S H +R    T   +AG     +    G   +      Y  
Sbjct: 298 CNDEQFLHSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYAD 357

Query: 325 GADRIRLG 332
               ++  
Sbjct: 358 VTKEMKAA 365


>gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 384

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 91/310 (29%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               +      ++   TL  L  ++          S++  +   +       +       
Sbjct: 68  LERIKAEFLGKKEDIDTLSQLFDKHNADIAQQVGISVSAATLQKYNVCRRHFLEFLQNDY 127

Query: 107 --GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   IR      +       ++A + + + + +     +   +  +P L+
Sbjct: 128 RRADIKLSELTYTVIREFDIYLRTAVGQNANTATKTMKTFKTIVILGQKMGVLHHDPFLN 187

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 188 HRF-HLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 246

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                           +VE     + +    +     +T+        +   + + + K 
Sbjct: 247 VTLDDKQWIMTKRQKTSVEANVLLLDIPKRIIAKYSGKTYRDGKLFPILTNQKTNAYLKE 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 307 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 366

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 367 MEQLADKLGK 376


>gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
 gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
           A Holliday Junction
          Length = 356

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 23/331 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  N   +    K +    R    E 
Sbjct: 126 AXLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NK 284
                L              +G ET   +  ++ +++   S +F      +G+       
Sbjct: 246 LHIDALGISXKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKT 315
           + H +R  SA    +   +        G K+
Sbjct: 306 TFHELRSLSA-RLYEKQISDKFAQHLLGHKS 335


>gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937]
 gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937]
          Length = 363

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 95/339 (28%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+R+R           A+       +  + ++   +    +L
Sbjct: 4   RKLASGKWLCECYPFGREGKRVR-KQFATKGEALAFERFTMEESENKPWLG-EKADNRSL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +I  +       SL   +    +      D I    G+   R+++        E R  
Sbjct: 62  REIIDLWF------SLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLA 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K   + +  
Sbjct: 116 GQMTDSSGIPLAVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               ++++     +E + P L    +  L +G R S++     Q +     +    K   
Sbjct: 176 LAPNEIKRVLDACAESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAH 287
             TV +       +        +                  F+    + G+     +  H
Sbjct: 236 NRTVPISRELYDEIPRKSGKLFSPC-------------RKAFERAINRTGIQLPDGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321


>gi|288934630|ref|YP_003438689.1| lambda integrase [Klebsiella variicola At-22]
 gi|288889339|gb|ADC57657.1| lambda integrase [Klebsiella variicola At-22]
          Length = 361

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 101/345 (29%), Gaps = 33/345 (9%)

Query: 6   RLPPFV-TKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA---LTGSTPKREY 60
            LP  +  ++R R    +Y +R    G+ I L        +   + A   +  +      
Sbjct: 11  NLPRNLTYRKRDR----LYSWRNPITGQEISLGRVDRKDAVAQAIEANNYIDQNYLPSSL 66

Query: 61  INSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++  +  PT T    +  Y        L  N+     +    I  + G      +TTK I
Sbjct: 67  LDRLKDVPTFTFSAWLERYEVILERRELKPNTMKVRRNQLATIKEEFGRIPLASVTTKDI 126

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +E        S A    + +  +F+ A+ + ++  NP      P  K +  R   ++
Sbjct: 127 AEFLEGYIVCDKKSMASGLRSVLLDVFREAIVEGHIDRNPAEPTRTPTPKVKRERLLLEQ 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                 +  S     R A +  L +G R  D        ++     I  +KTG  + V L
Sbjct: 187 FTIIRDAASSHSDWARNACDLALVTGQRREDITLLRFSAVKEERLFITQEKTGHKLAVPL 246

Query: 238 PDGFMKL---LAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV 282
                     L            ++                +     +  F        +
Sbjct: 247 DLKLDAAGLMLHDVIERCREGNPSDFMVYSPVRRGGRKPGPLTPDGLTQAFADIRDSTEL 306

Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  S H +R   A+   +            G K +   + Y
Sbjct: 307 KFGPNPPSFHEIR-SLASRLYENERGEEFAQRLLGHKNLTMTKKY 350


>gi|21242957|ref|NP_642539.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108460|gb|AAM37075.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 399

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 107/365 (29%), Gaps = 35/365 (9%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE----- 59
           P    + T  G+      Y    G  R+  L    E T   A   A       R+     
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPS 88

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              +  +K  T++     + +         +++  ++   D+ II   G    + +    
Sbjct: 89  AAKNAARKAPTMREFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + ++   +  + A +    +R +F  A                P            +D
Sbjct: 149 VAALMKRLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235
                    E  +      +++   +R      A    +    ++    +   ++     
Sbjct: 209 ELVRIFRHLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWAWVDLENRRVVWPDSK 268

Query: 236 ------ELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  + +   +LL+  P  +   +     N+  + M   +    +      AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGEHYGGWTRVLKAAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-----------IRLGI 333
             HG+R  + T  A++G      M   G KTV     Y    D+            RL I
Sbjct: 329 GTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAI 388

Query: 334 KNSRR 338
             + R
Sbjct: 389 TGASR 393


>gi|312973894|ref|ZP_07788065.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331428|gb|EFP98684.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|323972701|gb|EGB67903.1| phage integrase [Escherichia coli TA007]
          Length = 375

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 12/271 (4%)

Query: 63  SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + + +  T++  I   +         +   +         +    G    R IT   +  
Sbjct: 86  AVQSRRLTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +    PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++
Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMTHVRYLKENNIRYRTLSATEI 203

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +F +  +   +    +    LY+G+R  + C    ++   ++  +    T +      P
Sbjct: 204 PRFINAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292
                +  +               ++             F      A ++    H +R+ 
Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPQLTDNARPLAYPRATFARICRDANIDNLRMHDLRRT 323

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT    A              ++     Y 
Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354


>gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11]
 gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 329

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 83/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  S   +++  + + +K  D   + ITT  +R  +++ +   + 
Sbjct: 53  EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNA 111

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +           F W   ++Y+  +P   + + K  T     ++ E M+  +     
Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTLVKETYSDEAMEIMRD-NCR 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  ++ +                  V         L  
Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++              +++  +   I  +    K  +     H  R+  AT + D 
Sbjct: 231 YLKTRDDDNSALFVSLLKPYKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|297565613|ref|YP_003684585.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850062|gb|ADH63077.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 387

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 104/369 (28%), Gaps = 56/369 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G+  Y      G+R R                L            P     TLK 
Sbjct: 11  YKRADGRYEYSLMI-SGKRHRGYAKTRKEAAKKLAELLVA----YGRNLLPDPDRITLKE 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR------ 126
               +  S     +   +   ++       I   GD   +++   H+             
Sbjct: 66  FCERWLTSVEHR-VKPTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHLYADLLKKRIH 124

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P++      ++    + AVR   +  NP   V+ P+        WT E+
Sbjct: 125 PNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLPWNPADRVKPPQAPRYTGEVWTPEE 184

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
           + +F    ++ S+    F   L +G+R  +        +     +I  ++          
Sbjct: 185 VWRFL-AEAQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWVRQNLTKAGSKRV 243

Query: 229 ------TGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQ 268
                   +   V++    +++L                    +   F  +    +  + 
Sbjct: 244 VQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVFTTSVGTPIEPSN 303

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-- 324
               F A   +A V     H +R    ++ A AG     +    G  +V    +TY    
Sbjct: 304 LRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGHASVAFTQQTYQHLF 363

Query: 325 GADRIRLGI 333
            A R +  +
Sbjct: 364 RAQRKKAAL 372


>gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855]
 gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM
           18228]
 gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 415

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 21/283 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT 129
             I +  K     + + +  +++      ++      D   + +I  K+I +        
Sbjct: 131 EYIEKLIKEREETA-SESIVVNWRR-LHTLLSMFAKCDYIQFSQIDMKYIEAFRSFLIKA 188

Query: 130 P-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           P           ++A  + +  +   K A    Y+  +     +    ++      + E+
Sbjct: 189 PQGGSKKGTISRNTASTYFSIFKAALKQAFVDGYLNCDIAAKAKNIMFQSARREYLSLEE 248

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237
           +        +    R A  F   +G+R SD  +     ++      +          VE 
Sbjct: 249 LNILAKTPCDDILKRAA-LFSALTGMRHSDIQKLKWSEVEEYNGGYRLNFTQQKTKGVEY 307

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
                +   +    K+   +       + +  S   +     +G+ K  + H  R   AT
Sbjct: 308 MPISPQAYKLCGERKKDGELLVFAGLPDPSWISRPLERWVKASGITKHITFHCFRHTYAT 367

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337
           +    G   + +    G   V   + Y K  D+ +    +  +
Sbjct: 368 LQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDEATEAFK 410


>gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 292

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 37/288 (12%)

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFK 145
           ++ + + ++ +  II   G     K+   HI+   ++      +    L     ++    
Sbjct: 6   STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+Q  ++ NP    E PK++   I+ WT+E++++F     E S+  + +   + +G+R
Sbjct: 66  LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFLLHSQE-SRYHIGYLLAITTGMR 124

Query: 206 CSDSCRAGVQHLQNNIFSIKTQK--------------TGTIITVELPDGFMKLLAMT--- 248
             +      Q +     ++   +                +  T+ +P   ++ L      
Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184

Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                          +    N     +    F   F      AGV     H +R   ATI
Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHNAGVKEIKFHDLRHTHATI 244

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G   +      Y+       +  +  +     +
Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVLPN--MQEEAVKNFGKSI 290


>gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like
 gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 391

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/399 (13%), Positives = 110/399 (27%), Gaps = 70/399 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M        +V     ++GK  Y       R  +G+ IR  +  ++              
Sbjct: 1   MAKKTN---YV-----KNGKEYYRVTVTIGRDENGKLIRKEFYGKTKKEAEAK--KEEYL 50

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRK 113
                  +   +  TL  L+  +       S    + + +E ++   I+  +        
Sbjct: 51  NGIRNGLNVDFQDVTLGDLMHTWLFEVVRMSRKPATFVKYEGHYRNYIKNSELYGMKISI 110

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-----PK 165
           I +  I+           S+         ++  F +AV + Y+A NPC   +      P+
Sbjct: 111 IKSIQIQRYYNKLYQQGKSSKTIKALNNFLKTFFNYAVDEGYLAKNPCTGKKIVIPGTPE 170

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            K E       ++  +      +G + +  F     +GLR  +        +      ++
Sbjct: 171 EKIETEIETFSDEEIKKIKEALKGHRLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELR 230

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------------- 265
            Q+    +T+    G  K   +  I K    I       +                    
Sbjct: 231 VQRMIKQVTIIDEKGNRKYKTIEQIPKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAG 290

Query: 266 ----------------------ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302
                                 A+     +K    +AGV     H +R   AT   + G 
Sbjct: 291 SVYLNDVEKGYVFTTELGNTIDASNLLKTYKKILNRAGVPYRKFHAIRHTYATKLFERGV 350

Query: 303 TAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339
               +    G   +      YT     +    ++    +
Sbjct: 351 PLKTVSELLGHSNISITANIYTHVIPKQKTNAVETLNDL 389


>gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
 gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J0161]
 gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 387

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 95/347 (27%), Gaps = 48/347 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G++IR         + A    L+         +    K       + ++R +     L 
Sbjct: 23  RGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELK 82

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
            N+   +  +  + II         KITT  +         +   PS+       +R LF
Sbjct: 83  GNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLF 142

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSG 203
           K+A        +  LSV++P  K      + + +++             ++  +  LY G
Sbjct: 143 KYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCG 202

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQ-----------------KTGTIITVELPDGFMKLLA 246
           LR  +      + +  N  +I                         I         ++  
Sbjct: 203 LRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKE 262

Query: 247 MTPIGKET---------------------FFINNDKQKMNATQFSIWFKAKATKAG---- 281
           +    ++                       F ++D         +  F     K      
Sbjct: 263 LAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDL 322

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              S H +R  +A+   + G     +    G   +     TY    +
Sbjct: 323 TKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITE 369


>gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 390

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 22/284 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               +       +  S      +  + I++ S  + ++    +     I   HIR+ +++
Sbjct: 84  SPQISFGTYAILWLDSQK-TVFSHATFITYTSSINNLLATFENMSICDIKPAHIRTYIKN 142

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + +P +    +  +  +   AV  + +  NPC SV+ P   +  + P + E++    ++
Sbjct: 143 SEVSPKTLKNHVGVLSSILSAAVEDDLIPKNPCTSVKLPHISSVEVDPLSLEEITMILNW 202

Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------I 232
                   LA F    ++G+R  +        +  N  +I   +T T             
Sbjct: 203 MKSHHPNMLAFFAVAFFTGMRTGEIMGLQWGDIDFNSHTITISRTITAGKLKHRTKTADS 262

Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGVN-KS 285
            TV++     + L+                  N            ++K      G+  ++
Sbjct: 263 RTVDILTELDEYLSYHKQFTYMKSEWLFLTYENKPFNKTDNIIKTYWKPCLKALGIKYRT 322

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADR 328
            +  R   A +  D G   + L    G KT+D     Y    D+
Sbjct: 323 LYQTRHTFACLMLDVGENINWLKKMLGHKTLDMILRRYGNRIDK 366


>gi|218886780|ref|YP_002436101.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757734|gb|ACL08633.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 355

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 93/321 (28%), Gaps = 19/321 (5%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-PAYMSALTGSTPKREYINSPRKKPTTLK 72
            + RHGK + Y       R++LP           +  A+      +           +L 
Sbjct: 5   RKDRHGKPVIY------GRVKLPSGKHREHRCTTWREAVAWEESVKVTQPDTVTGTVSLA 58

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE--SRKHT 129
            L + Y        +A  +       F  ++         +++T   I + ++  +R+ +
Sbjct: 59  ALFTAYLDHVQARGMADKTYGEKRQAFRDLLADVKPSLPVQRVTYALIEAHLDGIARRIS 118

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            + A +   ++   + W VR   +       VER +      +     +        ++ 
Sbjct: 119 GAQANRRRKNILAAYSWGVRAFKLPEPCPWRVERYREDK-RPKYVPTPEDFWKVHDAAKS 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELPDGFMK 243
              R      L++  R  +  R     L      ++               + +      
Sbjct: 178 PDERAMLFTALHTAARKEELFRMQRSDLDFANRRLRLWTRKRKGGGLEEDWIPMTQALHD 237

Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
            L    +            +       +    +   KAGV +   H +R  SA++   AG
Sbjct: 238 CLLRHRLQMGFREHVFVSSRGTPWVSATHLMYSLCDKAGVRRFGFHAIRHLSASMLDGAG 297

Query: 302 ATAHELMATYGWKTVDQAETY 322
                + A    ++      Y
Sbjct: 298 VPLSVIQAILRHRSALTTSRY 318


>gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 376

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 98/348 (28%), Gaps = 41/348 (11%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G     F    G+R    +      +    + L  +    E+ +        +      +
Sbjct: 20  GLYSARFVDRFGKRKHKRF----KKLQECRAWLADAIYVDEHSDISMPSDMLVDHWFDYW 75

Query: 79  RKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
                  ++  N+  ++ E Y   I    G      +   H +                 
Sbjct: 76  IGIKK-KTVRPNTVRNYTERYIRNIKPLIGKMSLSDVKPLHCQKIFYDMADQGYRTSTIY 134

Query: 138 TS---MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +   +  + ++A   E +  NPC   V+    K    +   + D+Q+    ++EG    
Sbjct: 135 QARITLYNMLEYAKENEVLRTNPCKRSVKSDMGKPSEKKVALERDVQKIFLRYAEGQSYE 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------------- 240
             + F+L +GLR  +      + +     +I+ +++                        
Sbjct: 195 NQYRFILQTGLRTGELVGLKWEDIDFESKTIQIRRSMEYRYSVKEWRIGEPKSKSGYRTI 254

Query: 241 ----------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                              +  ++   +E  F+      +  + +         KA + +
Sbjct: 255 PLTEEAVTILNKQKEKNKWISEISKEWEEFVFLCRKGTPVKNSTYDTALFKICDKAQIPR 314

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            S H +R   AT   +AG     L    G   +      Y    +  +
Sbjct: 315 FSMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362


>gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 204

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 14/156 (8%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
             G +     E    +G+R S+     +  +   +  I    K      V   +     L
Sbjct: 29  PLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFGEEAKTAL 88

Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292
                                F+N++   + +       K     AG++ S   H +R  
Sbjct: 89  NNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVHPHMLRHT 148

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            AT   + GA    +    G +++   + YT    +
Sbjct: 149 FATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQ 184


>gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium]
          Length = 337

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLHEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVTLPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT S  +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 335

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 89/327 (27%), Gaps = 28/327 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   GK I        R  RL     +      +S       K + +         L  
Sbjct: 4   RKLTTGKWICECYPNGRRGERLRKQFATKG--EALSFERRMMQKDQVVEVSVSNTLKLSN 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+S + +       +  +R       + I  + GD               E R       
Sbjct: 62  LVSRWYEMHGQTLTSGKTRKVK---LEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQT 118

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   ++  +  + +R +F    R  E++  NP   + + K   + +     ED+++
Sbjct: 119 KGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQFKEGDQELAFLYPEDIKR 178

Query: 182 FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                 E     L       L +G R S++       L  +  +    K+    TV +  
Sbjct: 179 LLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISK 238

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                L        +              F    K  A +    +  H +R   A+    
Sbjct: 239 RLYDRLPKRRGSMFSSC---------YDAFKHALKRSAIELPKGQRTHVLRHTFASHFMM 289

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     L    G  T+     Y   A
Sbjct: 290 GGGNILVLQQILGHSTILMTMRYAHFA 316


>gi|139438178|ref|ZP_01771731.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC
           25986]
 gi|133776375|gb|EBA40195.1| Hypothetical protein COLAER_00719 [Collinsella aerofaciens ATCC
           25986]
          Length = 356

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 106/360 (29%), Gaps = 44/360 (12%)

Query: 14  ERTRHGKIIY---YFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +  +    Y   Y+R   G +R +      S    A           +    +      
Sbjct: 4   YKDDNNGTFYVQCYYRDARGSKRHKTKRGFSSEVEAAVW-------EGQFKSLNGGAMDM 56

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    +  Y        +  ++ I+ E   + +++   GD     +    +         
Sbjct: 57  TFSEFVEVYASEVKPR-IREHTWITKEYIINDKLVPFFGDMRMCDVRPIDVIRWQNELTE 115

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178
                     P+        +  +F  A R   +  NP   V++   K    ++ WTK++
Sbjct: 116 HRDAEGKSWAPTYLRTVNNQLNAIFNHAERYYGLTDNPVRRVDKIGSKKGGEMQFWTKDE 175

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
             +F     +      AFE L ++G+RC +               ++  K+         
Sbjct: 176 YLRFSEAVMDKPLSFHAFELLYWTGIRCGELLALTPSDFMLESSRLRINKSYQSLHGVDT 235

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                      T+ +P      +A     ++    +     +     +   +     +GV
Sbjct: 236 VTDPKTPKSVRTIVMPAFLRDEMADFIELRDDVAPDERLFAVTKHFLAHEMERGCKASGV 295

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA----DRIRLGIKNSR 337
            +   H +R    ++  + G +A  +    G + VD    Y        D +   +  +R
Sbjct: 296 KRIRVHDIRHSHVSLLIEMGFSALAIAERMGHEAVDITYRYAHLFPTKQDEMAAALDGAR 355


>gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase
 gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186]
          Length = 336

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 90/332 (27%), Gaps = 38/332 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G  I        +  R+     +          T   P        ++   TLK 
Sbjct: 4   RKNPAGGWICELYPNGAKGKRIRKKFATKGEALAFEQYTVQNP----WQEEKEDRRTLKE 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+  +  SAH  +L    +     +        G+   R    +      E R       
Sbjct: 60  LVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + +P +    L   R +F    R  E+   NP  ++   + +   +   T + + 
Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMTWLTHDQIS 176

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           Q     +    P L       L +G R S++       L     +    K     TV + 
Sbjct: 177 QLLGECNRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294
               + L     G+                    F++   + G+   A    H +R   A
Sbjct: 237 KELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFA 284

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     L    G   +     Y   A
Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122]
 gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122]
          Length = 353

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 78/303 (25%), Gaps = 37/303 (12%)

Query: 73  WLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             I  +         +  ++   + +    I+R  G      +    +   + S     +
Sbjct: 14  DYIDFFVSMKERSGAIERSTVRDYHAVARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGY 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWS 187
            P +  +    +    K+AV Q  +  NPC   + P++         + +  +       
Sbjct: 74  APKTCSKAFRLLSQALKFAVGQGAIDKNPCDFCKPPRQIRSRFIALDRAERSRMLYLARQ 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232
           + S    A E  L +G+R  + C        +       +  G                 
Sbjct: 134 DDSPLGFAIEIALTTGMRRGEVCALKWSDFSSRGTLTVRRALGNAEGGFYIKEPKSLSGI 193

Query: 233 ITVELPDGFMKLLAMTP---------------IGKETFFINNDKQKMNATQFSIWFKAKA 277
            T+ L     + L                    G       +  Q  N  +    F    
Sbjct: 194 RTIPLASDTNEALGRLKGAFLEANRSEGSASADGYIVGAGESGDQPYNPDRLGRDFAQFC 253

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKN 335
              G   +   +R   AT    AG     + +  G   V      Y +   +  R     
Sbjct: 254 RDNGFECTFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRAAGA 313

Query: 336 SRR 338
             R
Sbjct: 314 IER 316


>gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 78/287 (27%), Gaps = 16/287 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHT 129
           L        +    +  ++ ++     ++    G   +      +    I    +     
Sbjct: 13  LRQRLIDDMNMRRFSQETQRNYLRDIGRLATFLGRSPHTATTDDLRRFQIEQQDDGVPV- 71

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQQF 182
             +    ++++R  F   V +  +A          K      R         T     Q 
Sbjct: 72  -PTMNSIVSALRFFFTHTVDRPDLARKLVRLAHPRKLPVVLSRDEVARLLNATTCLKHQA 130

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
               + G+  R+A    L      S+     V+  +   +         ++ +       
Sbjct: 131 ALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLLLLLRQWWKVG 190

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
           +   +       F   +  + ++  Q        A  A + K    H +R   AT   + 
Sbjct: 191 RQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRHSFATHLLED 250

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSD 346
           G     +    G   ++    YTK A R +R       ++      +
Sbjct: 251 GTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTVTSPLDKLGLFKPEE 297


>gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 330

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 9/275 (3%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               R K         E+           ++R +  +Y   ++I + G      I    I
Sbjct: 37  TAPERLKAPLFAEYAEEFWLDYSPH-WKPSTRAASRAYIDKRLIPRFGTLCVDAIERADI 95

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               +S      +  + +  M V+ ++A +  Y   N        + K +    +   D 
Sbjct: 96  NRWRDSMADVGGAFNRSIPVMSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPERYLSADE 155

Query: 180 QQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +                  A   L+Y+G R S+      +++Q +  ++   KTG   T
Sbjct: 156 YRRLGKVLAEHDGANEFVVPALRMLIYTGARVSEIATLRWRYVQPSRLALPDSKTG-PKT 214

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           + L    + +L       +   +     +         ++    KA +     H +R   
Sbjct: 215 IYLNPQAIAVLDALQRRGDDQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSF 274

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A+++   G     +    G    +    Y   AD 
Sbjct: 275 ASVAIAKGIPLATIGKLLGHALPETTARYAHLADE 309


>gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK330]
          Length = 328

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 75/264 (28%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
             L+  +  +      +  S   ++   + +         R +TT  +R       + RK
Sbjct: 51  SKLLELFISAKRIEGCSEKSLKYYKMVIENMFVSL-KTSIRDLTTSDLRTYLARYQQERK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K         + E ++  +    
Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETLSDEGLELLRDACD 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +  R   + +              +   V         L 
Sbjct: 170 K-IRDLAMIDLLTSTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLI 228

Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++           +              +    KA +NK   H  R+  AT + D
Sbjct: 229 NYLDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312


>gi|54297046|ref|YP_123415.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris]
 gi|53750831|emb|CAH12239.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 112/347 (32%), Gaps = 30/347 (8%)

Query: 21  IIYYFRKGHGR-RIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLK 72
            IY ++ G    +I L +    +   A            +G  PK+       KK  T++
Sbjct: 39  WIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTME 98

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTP 130
            LI+ + +     +         +     II   G  +  KI    I + +++  ++  P
Sbjct: 99  QLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDTIVKRGAP 157

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--------RPKRKTEGIRPWTKEDMQQF 182
             A + L+S++ +F +A+ +  +  NP  +++        +P  +   +           
Sbjct: 158 IHANRVLSSLKQVFNYAISRGNLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLN 217

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   Q + A + +L +G+R ++   A   H              T   + +     
Sbjct: 218 SDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLS 277

Query: 243 KL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
           +L       L                + ++        +    + G+   SAH +R+  A
Sbjct: 278 ELTKSVILKLNEGSDSSFVLSGLVPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFA 337

Query: 295 TISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
           T   +        +    G K      TY K     + +  ++   +
Sbjct: 338 TQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSK 384


>gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70]
 gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s]
          Length = 300

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   +  A
Sbjct: 201 ELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|260664724|ref|ZP_05865576.1| integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260561789|gb|EEX27761.1| integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 383

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/379 (11%), Positives = 98/379 (25%), Gaps = 51/379 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRR------------------IRLPYPHESTFIPAYMSALTGST 55
             T+ GK+ +  R    R+                  +             Y + L   +
Sbjct: 3   YITKRGKV-WQVRHSRRRKKIVQQPDGSYKVDYVLEQVSKSGFKTKRTAQEYAAQLELES 61

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K   I        +      ++        +   + + +     ++    G    +KI 
Sbjct: 62  AKGYDI----TANPSFAEYFEDWYIETKKDKIRNTTLVKYIQDSKRLYDYFGFEKLKKIK 117

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RP 173
               +  + +    P S        R   ++A+R   ++ +    VE      +    + 
Sbjct: 118 RIDYQRFMNTLDLAPDSVKMINRRYRACIRYAIRDGIISRDFTDGVELKGNDKQSRATQY 177

Query: 174 WTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +  ++++  S       PR          L +G R  +        L +   +I+  K+
Sbjct: 178 LSLAEIKKLLSVAIATRNPRYTSSYMIITALLTGARYGEIAGLQWSDLDSKANTIRINKS 237

Query: 230 GTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                              I V      + L          F     K            
Sbjct: 238 YNQNTKTNGPTKNLQSIRTIIVSPTLVKLMLELKQNGSNFIFGSVGLKIPPATNNVGSVL 297

Query: 274 KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +    KA + K     H +R     +    G   + +    G K ++   + Y    D  
Sbjct: 298 RNLMKKAKITKKDFVFHSLRHCHVALLHSQGIDWYAISKRLGHKDLNVTLKIYAYMLDED 357

Query: 330 RLGIKNS--RRISSVVDSD 346
           +         ++  +V  +
Sbjct: 358 KRKSDTLISNKLEKIVQQN 376


>gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 412

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 119/395 (30%), Gaps = 69/395 (17%)

Query: 17  RHGKIIYYFRKG-----HGRRIRLPYP----------HESTFIPAYMSALTGSTPKREYI 61
           + G+  +           G R RL              +          L     +    
Sbjct: 7   KRGENTWRLTIDLGYNQDGSRNRLRRKVVVEDKTLLKTKKKLREHLEDELAKFKQEVLSG 66

Query: 62  NSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
              + +  TLK  I  E+  + ++   +L+  +  ++  +  + I+   G      I T 
Sbjct: 67  EYIKPEKMTLKQFIENEWEPKYASKPKNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTL 126

Query: 118 HIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           HI + ++                +P +       ++ +   A   + +  NP + V++PK
Sbjct: 127 HIVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPK 186

Query: 166 RKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            +   +  + +++ ++     + E  + RL     +  G R  +        +     +I
Sbjct: 187 VEQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTI 246

Query: 225 KTQKTG-----------------TIITVELPDGFMKLLAMTPIGK--------------- 252
             +K+                  +I T+++P  +M  L                      
Sbjct: 247 SIRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGD 306

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
               F     +    +  S W+     +  + +   H +R  SAT+  +AGA+   +   
Sbjct: 307 RRYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQR 366

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G          Y       ++  + + +      
Sbjct: 367 LGHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 399


>gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21]
 gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21]
 gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21]
 gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34]
          Length = 359

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 103/335 (30%), Gaps = 20/335 (5%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R R     Y   +    G+R         T   A  +A       +   N    +  TL
Sbjct: 4   YRKRSNGWEYRINYYDSTGKRKPKTKGGFRTKSEAIKAA--AEMELKLQDNVNVDEDITL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                ++ +     +++  +  ++ +   +I    GD   + IT    +  + S   T +
Sbjct: 62  YDYFKQWCEVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  +F   ++   + AV + Y+  N C   +   +           ++++++    E 
Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181

Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
           S+        A   +  +G+R ++     V  ++ +   +   KT      T  +P    
Sbjct: 182 SKHPEYASYAALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296
             +   P+  E     +     +  +       +   K      G     H +R   A+ 
Sbjct: 242 SSIREIPLDDEFINFIDQLPPTDDGRILPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                     +    G + ++   E Y       +
Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336


>gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453]
          Length = 303

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 90/273 (32%), Gaps = 15/273 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHT 129
            + ++ E+ +      +A  +   +    + + ++  D         + +   +      
Sbjct: 15  WEDILEEFLRFKLLNGIAKTTHKDYIRTVNLLFKRFPDAWGSYYKLEEAVIDHLNQEGIA 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQQFKSFW 186
           P++    LT +R  FKW V + ++  NP   +++ K  +  +       +E ++      
Sbjct: 75  PATFNSRLTYLRTFFKWCVEEGHLKKNPLTKIKKRKEGSRIVAISIETLQELIRVPDQST 134

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFM 242
             G +      F L +G+R S++              ++       T    T+ +    +
Sbjct: 135 FVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSRTLNISPVTV 194

Query: 243 KLLAMTPIGKETFFINNDKQKMN-------ATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
             L      +   + N                 +    +  + + GV+ + + +R   A 
Sbjct: 195 DALKRLIDMRPRSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHITPYALRHAFAL 254

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                GA+A  L  T G   +   + Y   AD 
Sbjct: 255 EFLRNGASAFSLQKTLGHVDISMTKRYVALADE 287


>gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 320

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 86/288 (29%), Gaps = 13/288 (4%)

Query: 59  EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +  R     L   ++  Y         +   R+       ++    G     +I   
Sbjct: 19  RRRDGARAAILRLDAFVAAVYLPHVRLRKRS--WRVDERIARQRLSPAFGARRLDRIRRG 76

Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +   +         P++  + L   + +   A+    +        + P  K    R  
Sbjct: 77  EVEDWLRDLAEEGLCPATCNRILAVFKSVCSLAMLHGVLPAGQSPCADVPPFKIHLQRER 136

Query: 175 TKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKT 229
                +  +         R    A   LL +G R S+  +A  ++++ ++   ++   K+
Sbjct: 137 YLAPDEAQRLMRELERSARPEAAAIRLLLLTGARKSEILKARWENVRLDLRLLTVPLSKS 196

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAH 287
           G    + L D  + ++   P G    ++          +   +++       G+ +   H
Sbjct: 197 GKPRHLPLSDAAVAVIRALPRGPGCPWLFPGHAPGKPLSDVYLFWDGLRRGLGLADVRIH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +R   A+   +AG + +E+    G         Y        L    
Sbjct: 257 DLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLLAAAQ 304


>gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2]
 gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 409

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 90/300 (30%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
           +T  +           TL  L   + +         ++  +  ++     ++        
Sbjct: 93  ATDVKNLFQGGIATQMTLFRLFDRHIEEVRARVGIDVSHRTIPNYLYTRRRLGEFVSKNY 152

Query: 108 ---DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D  + ++  + IR   +     R     +   +L  ++ + + A ++ +   +  ++
Sbjct: 153 NVKDLAFSQLNEQFIREFQDYLILERNLGVETVRHYLAILKKICRIAFKEGHSDRHYFVN 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQ 215
               K+K    R  ++E+ ++ +    E  +      R  F F  Y+G    D       
Sbjct: 213 YPLLKQKVNPPRTLSREEFEKIRDLQFEEHRWSHITTRDMFLFACYTGTAYVDVIFITND 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272
           +L  +       K             +KLL       E +   +      KM        
Sbjct: 273 NLSKDDAGDLWLKY--QRGKNGKLCRVKLLPEAIELIEKYKNPSRETLFPKMEYNALKWN 330

Query: 273 FKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            ++     G+    + H  R   +++   + G     +    G   +   + Y +   + 
Sbjct: 331 LQSIRQLIGMTGPLTYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKK 390


>gi|238922801|ref|YP_002936314.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
 gi|238874473|gb|ACR74180.1| phage integrase family protein [Eubacterium rectale ATCC 33656]
          Length = 363

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 38/359 (10%)

Query: 17  RHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK     Y+    G +        +T   A          +    ++       L   
Sbjct: 14  KTGKWTVQCYYENWKGEKKHKKKRGFATKKEAL------EWEREFLKSTSANMEMMLGAF 67

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  Y +    G L   +  + +   +  ++    +    +IT   I       +    S 
Sbjct: 68  VDVYFQD-KAGELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAKGYSQ 126

Query: 134 IQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEG 189
                    +  LF  A     +  NPC  V++  +   + +  WTK +   F     + 
Sbjct: 127 TYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFIRGIDKE 186

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------I 233
           S+  + FE L ++G R  +        +      I   KT                    
Sbjct: 187 SRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPKTEQSIR 246

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
            +++P+   K +            N     + A       K +  K+GV +   H +R  
Sbjct: 247 VIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHDLRHS 306

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGA--DRIRLGIKNSRRISSVVDSDDP 348
                 + G     +    G + +     TY       + ++       +++  + + P
Sbjct: 307 HVAYLINQGVQPLIIKERLGHRDIKITLNTYGHLYPNQQKKVA----DMLNATRNENAP 361


>gi|153949027|ref|YP_001401219.1| phage integrase family site specific recombinase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960522|gb|ABS47983.1| site-specific recombinase, phage integrase family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 338

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 108/346 (31%), Gaps = 41/346 (11%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M    +      LPP V +     GK  Y F    G  I L               ++  
Sbjct: 1   MAGKRKKPKDTDLPPRVYR-----GKSKYEFHPARGGSISLCPLDAP---------ISQV 46

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
               E +N    +  TL  L  ++  S  +  LA+ ++  +  Y  +++   G+     I
Sbjct: 47  WSDYEKVNDRLPEKVTLNKLTEQFLHSMDFCELAIETQKDYRKYSLKLLPVFGEMSPDNI 106

Query: 115 TTKHIRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +HIR  ++ R  T  + A +  T +  +++W   +  V  NPC  V++   K      
Sbjct: 107 RPEHIRKYMDKRGITSRTQANREKTFLSRVYRWGYERGMVKGNPCRGVKQFTEKARDRYI 166

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             +E    ++         R+A E       R +D        L+     IK  KT    
Sbjct: 167 TDEEYDAVYQVAPDV---VRVAMEIAYLCLARQADVLALRRDQLREPGIYIKQGKTAARQ 223

Query: 234 TVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----- 281
                +     +         + I            +     F+  ++     A      
Sbjct: 224 IKAWSERLRDAITLAESLPLKSGISSVYIIHQRTGLRYTRDGFNSKWRKAREVAKKTYPE 283

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              N + H ++    +       T  E  A  G K + Q   Y + 
Sbjct: 284 LDFNFTFHDLKAKGVSDL---EGTLSEKQAISGHKNMGQTARYDRK 326


>gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D/UW-3/CX]
 gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276]
 gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           6276s]
 gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD
 gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9768]
 gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11222]
 gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/11074]
 gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           G/9301]
          Length = 300

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   +  A
Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
 gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia
           billingiae Eb661]
          Length = 335

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 90/302 (29%), Gaps = 16/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR       +   A+   +  +  KRE  ++ +     L  LI+ +        +
Sbjct: 20  REGKRIR-RKFERKSEAKAFELHIMATAGKREEWHNTKTDRRKLSELIANWYD---VHGI 75

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
            + +      +  +     GD     +T K + +    R   + +PS+  + +  +  +F
Sbjct: 76  TMKNGKIERMHLLKTAAHLGDVPASTLTKKLLLNLRSERLKQEVSPSTINRDIYRLSGMF 135

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +          +      ++      +   +         EG   R+A    L +G 
Sbjct: 136 TTLIMLGEYKQANPVRELPALKQAAPEVIFLMPEQITQLLERLEGDDLRVALLC-LSTGA 194

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S++       ++         K G   TV +     K +     GK            
Sbjct: 195 RWSEAANLEAIRVRMQRVHFFATKNGKNRTVPISAELEKTIKTKISGKLFNVD------- 247

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F    +         ++ H +R   A+     G     L    G   ++Q   Y  
Sbjct: 248 -YENFRQQLREVIPDLPRGQATHVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYAH 306

Query: 325 GA 326
            A
Sbjct: 307 FA 308


>gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
 gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPS---SAIQFL 137
            + +  + +S+    D+        D    +  +    +R  V S         +  + L
Sbjct: 14  RNYSEKTILSYGIDLDEFEAYFKSVDEEFEFTSVDADVVRGWVLSLMDEGRAETTVNRKL 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQFKSFWSEGSQP 192
           +S+R  + + +RQ+ VA++P   V  PK+K             +           EG + 
Sbjct: 74  SSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQLLDGFEFPQTFEGVRD 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL------ 245
           +   E    +G+R ++      + +  +      T K      +   D   ++L      
Sbjct: 134 KAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQRLIPFGDRLQEVLSAYLQE 193

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301
                    E FFI     +++ +  +   K   +K      KS H +R   AT   +  
Sbjct: 194 RARFYSGECEAFFIRKSGVRLSPSSVNYIVKRYLSKVVTLKKKSPHVLRHTFATSMLNHQ 253

Query: 302 ATAHELMATYGWKTV 316
           A    +    G +++
Sbjct: 254 AELEAVKELLGHESL 268


>gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT]
 gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT]
          Length = 334

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 74/303 (24%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+   R        ++ +  ++  +  + I   G    R +    I + +       + A
Sbjct: 18  LLDMVRDKLRLKHYSLRTEQAYVDWIKRYILFHGKRHPRDMGAADIEAFLTHLAVKRNVA 77

Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +    +  R+   V +    +V +           +  ++Q   +  S     
Sbjct: 78  ASTQNQAKSALLYLYREVLEVELPWLDNVTQANVPKRLPVVLSVSEVQSVLAGLSGTHAL 137

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             A  +     L  +   R     ++     ++  K        LP+  +  L    +  
Sbjct: 138 VAALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVTMLPESVVSALKGHLVKV 197

Query: 253 ETFFINN---------------------------------------------DKQKMNAT 267
           +     +                                              +  M+  
Sbjct: 198 KMLHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQLSVDPRSGKTRRHHMDEK 257

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K     AG+    + H +R   AT    +G     +    G   V     YT  
Sbjct: 258 GVQRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 317

Query: 326 ADR 328
            +R
Sbjct: 318 LNR 320


>gi|13095806|ref|NP_076696.1| integrase [Lactococcus phage bIL309]
 gi|15672418|ref|NP_266592.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723313|gb|AAK04534.1|AE006280_10 prophage pi1 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830995|gb|AAK08349.1|AF323670_1 integrase [Lactococcus phage bIL309]
          Length = 377

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/374 (11%), Positives = 106/374 (28%), Gaps = 46/374 (12%)

Query: 17  RHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + GK+  Y   ++   G+  +L          A   A                +   L  
Sbjct: 6   KRGKVWQYEISYKDTDGKYKKLRKSGFPKKADAISEAGEIEANL-AKGFYTVSQDILLTD 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
              ++ +    G ++  +   +      + +       + +     +  +      H+ S
Sbjct: 65  HFKQWIEIFKKGKVSDGTYRKYLYTLSVLKKHFSTATIKTMNRVKYQEMLNEFAEGHSDS 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VERPKRKTEGIRPWTKEDMQQFK 183
           S  Q    +R   +  +    +  +             +  + K      +TK      +
Sbjct: 125 SVKQINVHVRASLENLLDDFIIKNDFTKGAISKGGKGSKSAELKYLDFEDFTKLIALAKE 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                 S   + +   + +G+R S+       ++      I  ++T              
Sbjct: 185 KINPIYSSSFMIYIAAM-TGMRFSELLGLTWDNVDFEKGQIYVKRTWDIYKNNFAPTKND 243

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAK 276
                         + +   +   KLL    I  E  F+  + +   +     +   +  
Sbjct: 244 QSVRFLAIDSSTMQVMINYKEQQEKLLKRLEIEPEHPFVFYNIKNGLITNNSLNKQLRNM 303

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
             K G  K  + HG+R   A+     G     +    G  +++     Y+     +    
Sbjct: 304 CKKLGFKKIITCHGLRHTHASTMLYKGINILYVSKRLGHSSLNVTMSVYSHILKELEEKD 363

Query: 334 -KNSRRISSVVDSD 346
            +N ++I S ++ +
Sbjct: 364 NENIKKIFSEINDE 377


>gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
 gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2]
          Length = 247

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 27/234 (11%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + ++   P+S  + L+++R  F++   + +   +P   ++ PK++    +  + E++ + 
Sbjct: 1   MAAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKL 60

Query: 183 KSF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQK 228
                             +  +     E L  +GLR S+     V   + +   +    K
Sbjct: 61  LDRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGK 120

Query: 229 TGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 V L     + L           G +           +       F  +      
Sbjct: 121 GSKDRMVPLSRKAREALQKFLTLRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAA 180

Query: 283 N-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                    S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 181 RAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEER 234


>gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2]
 gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/150]
          Length = 300

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 83/266 (31%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPI 250
                   +G+R S+ C   +  + ++   +  +   T    I+++        L+    
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 251 GKETFFINNDKQKMNATQ----FSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302
             +    + +   ++        S  +K     A +      S H +R   AT   +  A
Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae 642]
          Length = 328

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 116/334 (34%), Gaps = 36/334 (10%)

Query: 1   MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  +   LPP +     +HG    Y+    G+  RL        + AY   + G +  
Sbjct: 1   MRPRKKDRHLPPCMYL---KHG---AYYLVRKGKWERLGNDF-QEALLAYAKIVGGKSNG 53

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +            LI E   +     L+VN+   +E+   ++     +F+ R++  +
Sbjct: 54  GMSL------------LIDEALDAMR-RRLSVNTIKQYEAASVRLKTYLEEFEPRQVLPR 100

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+ +       TP+ A + ++ +R++F +A+ ++ V  NPC  + R   K         E
Sbjct: 101 HVAALKLHMSDTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAE 160

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                 +     S   + +E    +G R SD     +  + +   + + QKTG  + V +
Sbjct: 161 FAAICAASSEYMS---VIWEMCFLTGQRISDVLNIKLSDISDIGIAFEQQKTGAKLIVGM 217

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAG-VNKSAHGVR 290
                 LL                        ++     + F+A    AG +  + H +R
Sbjct: 218 SQDLKALLDRVHALPRKIRGATLFCARSGGKPVSYDTCKMSFRAACKAAGVIGATIHDLR 277

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S T +   G          G         Y +
Sbjct: 278 AKSLTDTDRQGNN---AQMLGGHSDPRMTARYLR 308


>gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 402

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/388 (12%), Positives = 97/388 (25%), Gaps = 70/388 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    R  P       R G + Y  R     G+++ L             +A        
Sbjct: 1   MAKKNRSVPQ-YGTVMRKGILYYRTRIQDADGKQVSLYATTCEELYEKQQAAKKQVEEIV 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
                P     T+     ++        ++  +  ++ S     II+  GD    ++T  
Sbjct: 60  FRRKHP-----TVAEYCEKWLL-MQSAKVSSATMKAYTSDMRNYIIKPLGDMYMEEVTAD 113

Query: 118 HIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            IR  +    +            ++ +F  A R E +  NPC+ +     K    +    
Sbjct: 114 DIRLALVPLTNKSEGLYNTVNMLIKCIFYSAERSELITYNPCVGISAKGGKPTKKKDALT 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +   +      +G  P L     LYSGLR  ++       +  +  +          +  
Sbjct: 174 DQQVEVLLDTVKGLPPYLFIMICLYSGLRREEALGLHWDCVFLDAPTPYISVRRAWRSEH 233

Query: 237 LPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFKA 275
                  +L      ++                             + +  +QF   ++ 
Sbjct: 234 NRPVVSTVLKTPAAKRDIPIPKCLVDCLREAKENSISDYVIADSKGEPLAYSQFQRVWQY 293

Query: 276 KATKA-------------------------------GVNKS------AHGVRKFSATISA 298
              ++                                +  +       H +R    T   
Sbjct: 294 VVVRSTKPRNYYKYVNGESIKYTVTPTLGMTQKNQPKIKYTIDFDVTPHQLRHTYITNLL 353

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG 325
            AG     +    G +        Y K 
Sbjct: 354 YAGVNPKTVQYLAGHENSKTTMDIYAKV 381


>gi|257880662|ref|ZP_05660315.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257814890|gb|EEV43648.1| phage integrase [Enterococcus faecium 1,230,933]
          Length = 346

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/326 (9%), Positives = 84/326 (25%), Gaps = 25/326 (7%)

Query: 15  RTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R            +G+  +L     +       +             + R   TT   
Sbjct: 5   VKRGKSYRAQVSLYKNGQHKKLSKTFATKKEATLWALEMELAKGEGKELAER--TTTFAD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               +        +   +  ++      I     D   + +    ++  ++     H+  
Sbjct: 63  FFENWIYLVKVNDIKETTFQNYVRTLGVIRNLFEDIQLKDLNDIVVQKKIDEYAETHSRK 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188
           +  + L  ++   + A  + Y+A +    V+               T     +       
Sbjct: 123 TTHEVLLKIKTALRDAYARGYIANDFARLVKTRGVNPPKRNKALSITNFKKLRNYVLQHP 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVEL 237
             +  +     L +G+R  +      ++L      ++            +       V +
Sbjct: 183 EDEFNVLVLLALETGMRRGELLAIKPENLYEYGIEVRHSISPTSDDTSLKTQNAKRDVSI 242

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296
                +L+   P+ +  +  +    K +               G+ K+  HG+R   A+ 
Sbjct: 243 NKEVYELIRQIPVKENGYIFSFGGFKQSEQ-----LAELLESLGIEKTTFHGLRDTHASF 297

Query: 297 SADAGATAHELMATYGWKTVDQAETY 322
                     +    G   +   + Y
Sbjct: 298 LFAQDIDIAYVSKRLGHINIQTTQNY 323


>gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
 gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787]
          Length = 387

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 96/355 (27%), Gaps = 51/355 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F    G+R  +   +  T         T      E   +   K  TL     
Sbjct: 25  KDGLYQARFINRFGKRQTI---YAKTLNEVRHKLRTEQYN-DEKAINVVDKNMTLDEWFD 80

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +  +    +   +++ S+ +++ +I  + G      +    ++      K T ++    
Sbjct: 81  IWLSTCK-KNCRSSTKGSYITHYKRIQEELGWRKLTSLNLIVMQEAFNKLK-TDNARKNS 138

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              +  +   AV  + +  N    +       + +  R  T  + + F    ++G+    
Sbjct: 139 KKILVDMLNRAVDTDLLVKNVAKQINTVIAKEEKKERRVLTIRETELFLE-QAKGTFYEN 197

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPD-------- 239
            F   L +GLR  +      + +                 K G  +              
Sbjct: 198 LFILALETGLRVGELSALQWEDIDFKKKVIHVKHTLCYFSKNGKYVFEMHDTKTNNGKRT 257

Query: 240 ----------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT----- 278
                              +++      KE F       K N                  
Sbjct: 258 IPLTAKAINSLKCQKLQKQEIILKGKTAKEEFQNLVFVTKNNQPTQQFLINQCMQLVIQN 317

Query: 279 --KAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
             KAG++ S    H +R   AT + + G     L    G  T+      Y    +
Sbjct: 318 MNKAGIDFSPFTLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHVTE 372


>gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 87/351 (24%), Gaps = 36/351 (10%)

Query: 10  FVTKERTRHGKII--YYFRK----GHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60
           +  +   + G++   +          G+R  +      +      A+   L         
Sbjct: 4   YKKRWTGKDGRVRTKWMVHIKHTGPDGKRKEIRRVSPVNTRRGAEAFERELRDKLLPGAR 63

Query: 61  INSPR----KKPTTLKWLISEYRKSAHWGSLA------VNSRISFESYF-DQIIRKSGDF 109
               R    +   TL+    E+         +                  + +I   G+ 
Sbjct: 64  GKDKRTQHIRSAPTLEDFAPEFLAFQASPGASRKGPNKPGELREKRRTLDNHLIPAFGEL 123

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVER 163
              +I  + I   +  +     + S+    L  ++ L   A R    + +   P      
Sbjct: 124 RLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLNVARRWELLDRIPEIPTPKKPA 183

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                            + +         R         GLR  D    G Q       +
Sbjct: 184 RTDFLSKDEARALLVGAEEQWRSLVLLGLRTGLRLGELRGLRWRDVDLEGGQVRVEQAVT 243

Query: 224 IKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKA 275
                T       +V L     + LA+    +           +D + +           
Sbjct: 244 NAGIGTPKSGKGRSVPLARDIREALAVRRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTR 303

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AG+ +  + H +R   A+ +  AG     +    G   +     Y  
Sbjct: 304 AAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAH 354


>gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145]
          Length = 331

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 104/322 (32%), Gaps = 24/322 (7%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++   G+     R     G+RIR           A+   +  +   +E++  P     TL
Sbjct: 4   KKLDDGRYEVDVRPQGADGKRIR-RKFKTKGEAQAFERHVLVNYHNKEWLEKP-ADRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVES 125
             L+  +     +   +             II K  +       ++T K I   R  + +
Sbjct: 62  TELLGRWW---IYHGKSHERGDIERGRLTTIIAKFAEMGVSRADQLTKKTITDYRVVMMN 118

Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P+S  + L  M  +F K     EY + NP   V+R +     +   + E++ +  S
Sbjct: 119 DGLKPASVNRHLAIMSGMFTKLIDAGEYHSHNPFREVKRLREAVTEMAFLSSEEITRLLS 178

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                     A    L +G R S+      +H+ N + +    K G   T+ +    +K 
Sbjct: 179 --MLDGDELNATLVCLSTGGRWSEVSNLKAEHIINQMVTFMKTKNGKRRTIPVSQDLIKR 236

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +     G+            +  +     +         ++ H +R   AT     G   
Sbjct: 237 IKTKNSGRLFNA--------SYYKVRNALREVKPDLLDGQAVHVLRHTFATHFIMNGGNI 288

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   + Q  TY   A
Sbjct: 289 ITLQRILGHSHIQQTMTYAHFA 310


>gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 344

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +        +        ++ G  
Sbjct: 15  DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +                  +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K S H  R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + +    +  
Sbjct: 313 YTQVSIKALQAVHA 326


>gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
 gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str.
           JGS1987]
          Length = 284

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 67/272 (24%), Gaps = 26/272 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR------ 126
           ++        L+  +   +E   +                 +T +  +  ++        
Sbjct: 7   KFLNIESNNGLSEGTLKKYEIDLNLFFEYMEHKQNIKSLNSVTGEEGQKIIDRYINYLKR 66

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             + PS+    + S+    K+   +         +    +              ++    
Sbjct: 67  EGYKPSTINGKIVSINKFLKYLGHEFKAKAIKVQNKMYIENIISEREF------ERLIRA 120

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +  +       L  +GLR S+     +             K G    + L     K+L
Sbjct: 121 CKDNKRDYTIIMTLANTGLRISELLSLTIND-PKKESIYIYGKGGKGRELILSPQLKKIL 179

Query: 246 AMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
                              ++  +     +        K G+       H  R F A   
Sbjct: 180 NDYIDNYRMKTHKRLLFTGERGALKRNAINKMLLKYQKKTGISKEKMHPHSFRHFYAKYL 239

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     +    G + ++    YTK + + 
Sbjct: 240 ISKGIGLDIIQTLLGHENINTTSIYTKSSKKE 271


>gi|251772880|gb|EES53439.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 337

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 92/318 (28%), Gaps = 15/318 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R    I++       R        +    A        +     I+   K     K   
Sbjct: 4   KRKDSPIWWVSFTVRGRRTRCSAGTTDKAQALELHDRWKSEAWREISLKEKPKLGWKEAA 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
            ++ +          +    E++   I          +I  + I S    +K T    ++
Sbjct: 64  LKWLEVKSAK----ATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSLKVKKKATGVSNAT 119

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L+ +R + + + +  ++   P   VE      + IR  TKE+  +  S+  E    
Sbjct: 120 VNRMLSLVRAILRMSFKLGWIESVP--PVELMPEPKKRIRWLTKEEAAKLLSYLPE--HQ 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIG 251
                F L +GLR  +        +                            + +    
Sbjct: 176 ERIARFALLTGLRQGNILGLEWSQVDLVRKVLWIHADQAKGRKAIGIPLPDAAVTLLREL 235

Query: 252 KETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
                      K N      ++ ++    KAG+     H +R   A+     G   + L 
Sbjct: 236 SGQHPQWVFTYKGNRINQVNTLAWRKALKKAGIENFRWHDLRHCWASWHIQDGTPLYALK 295

Query: 309 ATYGWKTVDQAETYTKGA 326
              GW+++D    Y+  A
Sbjct: 296 ELGGWESMDMVMRYSHMA 313


>gi|291459642|ref|ZP_06599032.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417674|gb|EFE91393.1| phage integrase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 364

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 100/342 (29%), Gaps = 34/342 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V ++  + G     +R       R     +         A+     +     +      T
Sbjct: 3   VYRD-GKTGTWRVIYRYTDYTGERKQ--TQKRGFQTRREAVAWEHEQIIKTTASLD--MT 57

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
                  Y        L  N+  + E     +I+    +    +I ++ I +        
Sbjct: 58  FGSFYERYAADIRPR-LKENTWNTKEHIICTKILPYFQNRKMIEIKSRDIVAWQNELLTC 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDM 179
                   + +        +  LF  A++   +  NP        K + + +  WT+E+ 
Sbjct: 117 RDKTGKPFSQTYLKTIHNQLSALFNHAMKFYGLRANPARQAGNMGKEERKEMLFWTQEEY 176

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
           ++F     +  Q   AFE L + G+R  +              ++   K+          
Sbjct: 177 RKFADVMMDKPQSFYAFEMLYWCGIREGELLALTPADFDFYAGTVTINKSYQRIRGRDVI 236

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                     T+++PD   + +             +    +  +         A +A V 
Sbjct: 237 TDPKTPKSNRTIQMPDFLTEEIQEYMELLYGIEEKDRMFTVTKSYLHHEMDRGAKEAKVK 296

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   H +R    ++  + G +A  +    G +++D    Y  
Sbjct: 297 RIRIHDLRHSHISLLIEMGFSAVAIADRVGHESIDITYHYAH 338


>gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17]
 gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17]
          Length = 407

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 89/312 (28%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
               +E     +    T   L  ++ +        S++  +   +E              
Sbjct: 92  LERIKEEFLGKKGDIDTFMALFEKHNEDFRKQVGVSVSATTLRKYELCKRHFAEFLKQKY 151

Query: 108 ---DFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   I       +        +A + +   + +     R+  V  +   +
Sbjct: 152 SRTDIKLCELTYTVIYDFDLYLQTAAGQCRNTATKTMKIFKTI-TILGRKLGVLHHDPFA 210

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D      +HL
Sbjct: 211 NYHFHLELVDRGFLTDEEILKIVNKKLTIPRLSLVRDIFIFSCFTGLSYIDVANLTPEHL 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
            N               VE     + +              + K     +  + + + K 
Sbjct: 271 VNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNKTYRDSKLFPVLSNQKMNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADICGIGKNLTFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++    ++  +D
Sbjct: 388 EHDMEELAGKLD 399


>gi|160936304|ref|ZP_02083674.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440773|gb|EDP18504.1| hypothetical protein CLOBOL_01197 [Clostridium bolteae ATCC
           BAA-613]
          Length = 366

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 105/365 (28%), Gaps = 41/365 (11%)

Query: 15  RTRH-GKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R ++ GK       +   G+ I        T   A        +     +          
Sbjct: 5   RDKNTGKWMSQIRVKDWTGKEIHKKKRGFKTKKEALQWEQDFISQADGSLG------MKF 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES----- 125
           K  ++ Y K A    L   +  +    F  +++   G+     I    IR+         
Sbjct: 59  KDFVALYMKDADPR-LRETTLANKHYLFNKKVLPYFGEMPINAIKPTDIRNWQNELINYR 117

Query: 126 ----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180
               R ++P+        +   F +AV+   +  NPC       +K  + +  WT E+ +
Sbjct: 118 RPNGRGYSPTYLRTINNQLTAAFNFAVKFYGLRENPCHKAGTMGKKNADEMLFWTNEEFK 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
            F             F  + Y+GLR  +      + +  +   I   K            
Sbjct: 178 VFIKAMESRPVGYTVFMVMYYTGLRVGELLALTPEDIDFDRHIISVNKNYQHLNGKDYIY 237

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                     V +P      L             +     +        K     +G   
Sbjct: 238 PPKTEAGYREVVMPKVLESCLKDYLAKLYDVQPTDRIFPYDRGWVGRQMKYGCDHSGTQK 297

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
              H VR   A++  D G T   +    G + V     TY+      +   + + ++ ++
Sbjct: 298 IRVHDVRHTHASLLIDMGCTPLLVAERLGHERVQTTMETYSHLYPNKQ--SEVANQLDAM 355

Query: 343 VDSDD 347
            + DD
Sbjct: 356 AEKDD 360


>gi|228958379|ref|ZP_04120103.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801334|gb|EEM48227.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 363

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 96/343 (27%), Gaps = 39/343 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K++ R G   +  R     G  ++++              + +               
Sbjct: 3   VYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TH 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T   +   Y            S     +   + +I++       +IT KHI      
Sbjct: 54  SSLTFAQVADSYFDWY-CQRRKHTSINVIRNIIYNHLIQEFNKIKIDQITAKHIMHYQNK 112

Query: 126 RKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  S+    +  T +  +F +A++   +  NP       ++++     + + D     
Sbjct: 113 IINNYSADHLKKIHTVLSSIFNFAIKFHGLTNNPARIAGNFEKESNKRMNFWEFDEFHQF 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231
               +    +  F  L YSG R  +      + +              N    K +   +
Sbjct: 173 IDSVDDLLYKTFFSTLYYSGARKGELLALTWEDINFEEKTININKTEFNRKITKPKTKSS 232

Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LP   + LL                          ++A+     +      AGV 
Sbjct: 233 NRIIMLPSLVVDLLKNLKEHATVKSSIKINYVVFGEFYTSISASTLDRKYTNYVLNAGVK 292

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 293 RILLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335


>gi|198242564|ref|YP_002214507.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937080|gb|ACH74413.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622256|gb|EGE28601.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 387

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/379 (12%), Positives = 114/379 (30%), Gaps = 57/379 (15%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     +    G+RI+      +    A                       T +   
Sbjct: 5   RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDKRKAELWRVDKLGDFPEVTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S  + +      +        + IT   I + V   ++       
Sbjct: 64  LRWLEEKADKK----SLDTDKGRMGFWLEHFEGVRIKDITEAKIYAAVSRMQNRKVKEIW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   S+  + L  ++ + + A  +++  +     ++ P  
Sbjct: 120 QQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALIKAILR-AAERDWKWLEKAPVIKVPSV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           + + +R   +++ ++      E    +   +F L +GLR S+      Q +         
Sbjct: 179 RNKRVRWLERDEAKRLIEECPE--PLKSVVKFALATGLRRSNIINMEWQQIDMQRRVAWV 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   K+L         +   + K+ +                  
Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKEGIRPDGSKTPTVRKMRVDDQ 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + A   +AG+ +   H +R   A+    +G     L    GW++++    Y   A   
Sbjct: 297 RAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356

Query: 330 RLGIKNSRRISSVVDSDDP 348
               +++++I S+   D P
Sbjct: 357 --LTEHAKQIDSIFSDDVP 373


>gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK405]
 gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK678]
 gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK408]
          Length = 328

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
             L+  +  +      +  S   ++   + ++        R +TT  +R       + RK
Sbjct: 51  SKLLELFISAKRIEGCSEKSLKYYKIVIENMLISL-KTAIRDLTTGDLRTYLAHYQQERK 109

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K        ++ E ++  +    
Sbjct: 110 SSKVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACD 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +  R   + +           K  +   V         L 
Sbjct: 170 E-IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLI 228

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                ++          +    ++         +    KA +NK   H  R+  AT + D
Sbjct: 229 NYLDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAID 288

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 289 KGMPIEQVQHLLGHVKIDTTMHYA 312


>gi|228952475|ref|ZP_04114556.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807212|gb|EEM53750.1| YdcL (Lambda integrase-like, N-terminal,DNA breaking-rejoining
           enzyme, catalytic core) [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 363

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 96/343 (27%), Gaps = 39/343 (11%)

Query: 11  VTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K++ R G   +  R     G  ++++              + +               
Sbjct: 3   IYKDKER-GTYFFVVRVRQFDGTQKQVKRRGFKTKKEAREAEAKMLVEKE--------TN 53

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T   +   Y            S     +   + +I++       +IT KHI      
Sbjct: 54  SNLTFAQVADSYFDWY-CQRRKHTSINVIRNIIYNHLIQEFNKIKIDQITAKHIMHYQNK 112

Query: 126 RKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  S+    +  T +  +F +A++   +  NP       ++++     + + D     
Sbjct: 113 IINNYSADHLKKIHTVLSSIFNFAIKFHGLTNNPARIAGNFEKESNKRMNFWEFDEFHQF 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGT 231
               +    +  F  L YSG R  +      + +              N    K +   +
Sbjct: 173 IDSVDDLLYKTFFSTLYYSGARKGELLALTWEDINFEEKTININKTEFNRKITKPKTKSS 232

Query: 232 IITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
              + LP   + LL                          ++A+     +      AGV 
Sbjct: 233 NRIIMLPSLVIDLLKNLKEHATVKSPIKINYVVFGEFYTSISASTLDRKYTNYVLNAGVK 292

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H  R   A+   + G +   +    G   V     TY+ 
Sbjct: 293 RILLHEFRHSHASYLINKGVSPLIVAQRLGHSDVATTLNTYSH 335


>gi|31616157|gb|AAP55251.1| integrase protein [Staphylococcus aureus]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/381 (12%), Positives = 109/381 (28%), Gaps = 52/381 (13%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K   + G   Y F             +R                + L        ++N
Sbjct: 2   IKKYTKKDGSTAYMFVAYLGIDPITRKQKRTTRRGFKTEREAKLAEAKLQTEVQANGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +     TT K +   + +           +     +   I+    +   + IT  + +  
Sbjct: 62  NEI---TTFKQVYDLWLEQYKHTVRESTYQRVVTLFNTAILEHFNNVSIKSITIPYCQRV 118

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKED 178
           +                   +F++ V  + +  NP    ++P+     + +    +++++
Sbjct: 119 INKWNDKYKDMKAIRIYTSNVFEYDVNLKIITENPFKHTKQPRKKETPQEDSYVYYSRDE 178

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
           +Q F SF          F  L ++G R  +        +     +I   KT         
Sbjct: 179 LQTFLSFVEGNLVDYAIFRTLAFTGFRRGELMALTWNDINFEKKTITINKTCARGNNYKP 238

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                       T+ + D  + +L    + + T  +      +   QF            
Sbjct: 239 IIQPPKTKSSYRTISVDDKTLSILKQWKVQQRTESLKFGHNALKKDQFVFTNVSTNKRLY 298

Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
               +        K    +   HG R    ++  +AG T  E+    G   +      Y 
Sbjct: 299 PEYCNKVLANVCKKHNFKQIKLHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYA 358

Query: 324 KGADRIRLGIKNSRRISSVVD 344
              ++ R   + + + ++ ++
Sbjct: 359 HVTEKQR--DQVAEKFANYIN 377


>gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           D(s)2923]
 gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           E/11023]
          Length = 300

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  RGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   D  A
Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLDNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
          Length = 310

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 92/295 (31%), Gaps = 36/295 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129
           ++    H+    +  +  ++ S        +   S D+       T + +   +  R   
Sbjct: 14  DFLAHLHYAKGYSQGTCYAYHSDLGIWGRWLEEASKDWRQATHLDTEQFVAWQMRKRGTK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175
                +  + +   +KWA++   V  +P    ++PKR                       
Sbjct: 74  AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQRAFQEAVQRV 133

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
                    +  +   +   +  + F  +L SGLR S++    V+ ++      K     
Sbjct: 134 EDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRMVNGVAKSVRII 193

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ++    +           L         F     ++         + +    +AG+
Sbjct: 194 GKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAPGEKPPGPHAVRAYLRRLIERAGI 253

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           +K  + H +R   AT   ++GA   ++ A  G   +   + YT  ++    GI  
Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGIVA 308


>gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702]
          Length = 312

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 39/290 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTP 130
           L  ++ +       L+ N+  ++    D+ +             T   I   +   +   
Sbjct: 8   LRRDWFRHLRTERGLSSNTLENYGRDADRYLTWLEGEGLTVATATVADIERFITDLRKGH 67

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
                     +SA + L+++R L  +A R   +      +V   +++ +  +  T +   
Sbjct: 68  EVTGGRPLAQTSAARSLSTVRSLHAFAARDRGIPDA-ADAVPVTQQRADLPKALTIDQVT 126

Query: 179 -----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTI 232
                +   +       + R   E L  +G R S+     V  +     ++    K    
Sbjct: 127 ALIEAVPVGEDARPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVLLRGKGDHE 186

Query: 233 ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQFSIWFKAK 276
             V +    +  +    +                     F+    ++M          A 
Sbjct: 187 RVVPVGTPALAAVDAYLVRARPTLAARGSGRAGSDGAALFLTASGRRMRRQSGFNVVAAA 246

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             KAG+   S H +R   AT     GA    +    G   V   + Y K 
Sbjct: 247 GEKAGLGKVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKV 296


>gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666]
 gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 23/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L            L   ++ S+     ++            T + +R           +P
Sbjct: 11  LRQRMLDDMRLRKLEDKTQSSYIRAVRKLAGFL-RRSPDTATVEDLRRFQLHLVDQGTSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    +T ++  F+  + +  +       ++  +   +     + +++ +     +   
Sbjct: 70  ITLNATITGLKFFFEVTLERADLM----ARMQSVRVPQKLPVVLSPQEVAR-LIAATANL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + + A      +GLR S+     V  + +   +++    K        L    ++ L   
Sbjct: 125 KHQTALSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRKDRYAMLAPVLLQRLRAW 184

Query: 249 PIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
                               +  Q +   Q +    A A  A ++K    H +R   AT 
Sbjct: 185 WRVGHAQGKMLPGGWLFPGLDPVQPLTTRQLNRAIHAAAQDAKIDKRVSMHTLRHSFATH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +       +    G K ++    YT  A
Sbjct: 245 LLEQKVDIRVIQVLLGHKKLETTSMYTHVA 274


>gi|330970858|gb|EGH70924.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 351

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 106/353 (30%), Gaps = 30/353 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK     +             +         +  YI     +  TL+  
Sbjct: 6   KTPSGTWKALIRKTGWPTV-AKTFRTKRDAEDWSRRTEDEMVRGVYIQRNGSERMTLEVA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
           ++ Y          + ++    S   ++I   G +    ++ + I +  + R + P    
Sbjct: 65  LARYLSDITPTK-KLATQRGEISKDKKLIEHLGKYSLAALSAEIIANYRDKRLNEPGRDG 123

Query: 132 -----SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +    L  +  L+  A+++    +  NP L++ +P       R  + E+ +   +
Sbjct: 124 NINNNTVRLELALLSHLYTVAIQEWGLGMTFNPMLNIRKPSPGGGRDRRLSPEEERDLLA 183

Query: 185 FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTI 232
             +  S P L +     L +G+R S+        +               S +T      
Sbjct: 184 AVNRHSNPMLGWIVRIALETGMRSSEISSLRRPQVDLAKRVIRLSDTKNDSSRTVPLSKR 243

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
            T          +         F  +    K     F+  +     K  +     H +R 
Sbjct: 244 ATEAFQAAMNNPVRPIDCNLVFFGESGKDGKRRPYTFTKIWGQLKKKLDLPDFKFHDLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            + +   + G +  E+ A  G +++   + YT          +   R+  +  
Sbjct: 304 EAVSRLVEGGLSDQEVSAISGHRSMQMLKRYTHL-----RAEELVSRLDEMKG 351


>gi|270158947|ref|ZP_06187603.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|289166278|ref|YP_003456416.1| phage integrase [Legionella longbeachae NSW150]
 gi|269987286|gb|EEZ93541.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|288859451|emb|CBJ13391.1| putative phage integrase [Legionella longbeachae NSW150]
          Length = 409

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 34/344 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           G  +R+ L      T       A      +           + +    TL+ ++++Y K+
Sbjct: 57  GKVKRVTLGKYGNLTVEEGRKQAKSLLGSVARGDDPIAEKKTKKVHAMTLQQVLNDYLKA 116

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSSAIQFLTS 139
                L   +   ++    +++    D     IT + I  R     + ++ + A   +  
Sbjct: 117 R--KDLKPRTLNDYQCVLHEVVPDWLDKPLVNITREMIAKRHTKHGQANSKARANNAMRV 174

Query: 140 MRVLFKWAVRQE---------------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +R +F +A+ +                Y++          K+                  
Sbjct: 175 LRAIFNYAMYEYQDGNGHPIITINPVKYLSHTRAWYRVDRKQTVIKPHQLADWYKAVIVL 234

Query: 185 FWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239
             ++  +  L +       L++G+R  ++     + +     +I         I      
Sbjct: 235 VETDNYRNALLWHDYFLLLLFTGMRKMEAASLRWEDIDLKSKTITLQDTKNHEIHTLPMS 294

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATIS 297
            F+  L       +T       +      +            +GV  + H +R+  ATI+
Sbjct: 295 DFVYELMEHRSRNKTSEFVFPAESKTGYIYEPKKAVNRVVELSGVLFTLHDLRRTFATIA 354

Query: 298 ADAGATAHELMATYGWK-TVDQAETYT-KGADRIRLGIKNSRRI 339
                 A+ L      K   D    Y  K  +R+R  ++     
Sbjct: 355 DSLDLPAYALKRLLNHKMNNDVTAGYIMKDVERLRKPMQQVANF 398


>gi|47091895|ref|ZP_00229689.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|47019611|gb|EAL10350.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
          Length = 330

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 95/316 (30%), Gaps = 29/316 (9%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107
                   ++           T       Y+K      +  ++  +  S  ++ I+    
Sbjct: 8   RKEALEWERQFLQQKTADLTMTFLSFWEIYKKDMKNR-IRESTWETKISIVERKILPYFK 66

Query: 108 DFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +    +I  K I                 ++P         +  +F  AVR   +  NP 
Sbjct: 67  NRKMSEIAPKDIIQWQNEMISYRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPA 126

Query: 159 LSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                  ++    +  WTKE+ Q+F     + +    AFE L + G+R  +         
Sbjct: 127 RKAGNMGKEKSVEMLFWTKEEYQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDF 186

Query: 218 QNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDK 261
             N  ++   K+                     +++P+   + +         +  +   
Sbjct: 187 DFNKGTLSISKSCQRLKGMDVITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERL 246

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +  +         A +  + +   H +R    ++  D+G +A  +    G +++D   
Sbjct: 247 FPITKSYLHSEMTRGAKEQKIKRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTY 306

Query: 321 TYTKGADRIRLGIKNS 336
            Y       ++ I N 
Sbjct: 307 RYAHLFPTKQMEIANM 322


>gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 339

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 95/340 (27%), Gaps = 47/340 (13%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T  +  +GK +   Y     G+R+R           A+ +       K+ ++     + 
Sbjct: 1   MTIRKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAVAFENFTMDEVNKKPWLGEKEDRR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES 125
             L  +I ++       SL   +    +        I    GD    ++T        E+
Sbjct: 60  H-LSEVIEQW------HSLYGQTLADPKRLMAKLRIICTGLGDPIASELTAGDFTKYREA 112

Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEG 170
           R                 P +      ++  +F    +   + A NP   +   K     
Sbjct: 113 RLKGEVRNEDGAFMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +   T E++++     ++   P L       L +G R S++       L     +    K
Sbjct: 173 LAFLTPEEIKRLLGACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTK 232

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                TV +       L        T                  F+    +AG+      
Sbjct: 233 GKKNRTVPISQDLYAELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQ 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             H +R   A+     G     L    G   +     Y+ 
Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSH 319


>gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 374

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 110/355 (30%), Gaps = 40/355 (11%)

Query: 11  VTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +TK   + GK+ Y F+        G+R+ +      T+  A  +A+      +      +
Sbjct: 9   ITKYTLKSGKVRYRFKTYLGMDDSGKRVMVTRQGFKTYQEA--NAVYKKLRAKGTQGYTK 66

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
            K  T++ + + +  +        ++    +  + + + +  G+    KI    ++  + 
Sbjct: 67  PKQATVEQVWTLWFDTYK-KHAKESTAHKMQQTYDNHVKKDFGNVYIDKIKPAKVQKWIN 125

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---- 180
           +              +  L  +A+   Y  INP   V  P + +   R  TK +      
Sbjct: 126 NLSTVLVRYRPAFNLLNNLINYAIVLGYANINPTKKVIVPAKTSVKKRRDTKNNYYDSPE 185

Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
                  +   +     + F+ L  +GLR S++       +      I   K        
Sbjct: 186 QVREFLNAAKKDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTINVGFNN 245

Query: 229 -----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------IWFKAKA 277
                              K L    +   +   +    K N    +         +   
Sbjct: 246 VELIAPPKTKESYRDVPLSKSLKADLMKYRSNIYDFVFCKANGDHLNLATPAHWLQRIYK 305

Query: 278 TKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQA-ETYTKGADR 328
             + + + + HG R   AT+      G T  ++    G  T+D     YT  + +
Sbjct: 306 NNSNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKK 360


>gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4]
          Length = 391

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 107/344 (31%), Gaps = 47/344 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V   +  +GK +Y  +   G R               ++ L     + E   +PR    T
Sbjct: 17  VYLGKDENGKKLYRSQTVRGTR---------QDAERALAELLVKAHRGELGRAPRG--LT 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
           +  L++ + ++    S   N+  +  +      R  G  +  ++T   +   +      +
Sbjct: 66  VAGLLNAWVEAHR-RSWRPNTLANKRTAARAWGRLIGHLEVERLTPADVELALARLAEEY 124

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PS+A +  +S R   +WA +++ +  +P   V  P+ +T+ I PWT E+  +F  +  +
Sbjct: 125 APSTAKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEYLEK 184

Query: 189 GSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGT 231
                  +  F   L +G+R  +      Q +                     + +    
Sbjct: 185 ARMRKAYKAFFRLALATGMRLGELQALRWQDVDLKRGEVCVRRTYSEAGKCFHEPKTKKA 244

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------------WFKAK 276
              + +       L      +    +   +   +                       +  
Sbjct: 245 RRRIPIDPVTTAWLREWRKEQLEERLRAGEGWADREGLVFTTRKGTVVDRDDLLRALRRA 304

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +AGV     H +R   A++          +    G  +V   
Sbjct: 305 CREAGVPGIRFHDLRHTHASLLLRQNVHPKVVQERLGHASVKTT 348


>gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1]
 gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1]
          Length = 384

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 83/283 (29%), Gaps = 20/283 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126
           K L   Y K+            ++ S    + R           +R+I         +  
Sbjct: 95  KALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYL 154

Query: 127 KHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   ++             +    +     A++   ++++P   V RPK  +      T 
Sbjct: 155 RDEATTRTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTF 214

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235
           +++Q            +  F F   +GLR SD  +     ++      +          +
Sbjct: 215 DELQAMAKAECRNPTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGL 274

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +  D   +   +                  +   SI  +    KAG+  + + H  R   
Sbjct: 275 QYHDISQQARELMGEQGAADDRVFFAISKYSAYLSIVLREWVLKAGITKHLTFHSGRHTF 334

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A +  + G   + L    G + ++    Y    D+ R   +  
Sbjct: 335 AVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRR--EAM 375


>gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 398

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 95/388 (24%), Gaps = 70/388 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M       P      T+ G + Y  R     G+R+ L              A       +
Sbjct: 1   MAKKKECIPN-YSSTTKKGVLYYRTRITDADGKRVDLYATTCEELYKKETEARRIIEELK 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
                 R++  T+     ++        ++  +   +     + I++  GD     +T+ 
Sbjct: 60  -----FRRENPTVAEYCEKWLL-MQSAKVSSATLKGYTCSVNNYIVKPLGDMYMSDVTSD 113

Query: 118 HIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            IR  +       +S    +  + + +F  A R E +  NP  S+          +    
Sbjct: 114 DIRVALIPASQKSASVYNKVNMLFKCIFYSAERSELLDYNPSASISAKGGTPAKDKDALT 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++  +          P L     LYSGLR  +        +  +  +          T  
Sbjct: 174 DEQVKVLLDTVRELPPYLFIMIGLYSGLRREEILGLQWDCVFLDTRTPYIAVRRAWRTEH 233

Query: 237 LPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWFKA 275
                  +L      ++                             + +  +QF   +K 
Sbjct: 234 NRPVVSTVLKTPAAQRDIPIPKCLVDCLLETKKSSISDYVIADSKGEPLAYSQFQRLWKY 293

Query: 276 KATKA-------------------------------------GVNKSAHGVRKFSATISA 298
              ++                                         + H +R    T   
Sbjct: 294 VTVRSTKERTCYKVINGQRIKYTKKPALGTHQKNNPSIVYTMDFEVTPHQLRHTYITNLL 353

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG 325
            AG     +    G +        Y K 
Sbjct: 354 YAGVDPKTVQYLAGHENSKTTMDIYAKV 381


>gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1]
 gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1]
          Length = 330

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 79/303 (26%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +   +  +  + I   G    + +    + + +         +
Sbjct: 15  LLDQVRDKIRVKHYSIRTETQYVQWIKRFILFHGKRHPKDMGAAEVEAFLTHLAVEGNVS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------------------------- 164
            S+  Q L+++  L++  +  E   ++  +  ++P                         
Sbjct: 75  ASTQNQALSALLFLYREVLGMELPWLDDVVRAKKPQRLPSVLNREEVSLVLERMEGTYGL 134

Query: 165 ------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                                      ++      +G++ R+                + 
Sbjct: 135 MARLLYGTGMRLMECCRLRVKDIDFRQREILIRDGKGAKDRVTMLPETLIKPLQEYLLKR 194

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--- 269
                 +    +        +  + P+   + +        ++ ++    +         
Sbjct: 195 RRLFEDDLSKGMTEVYLPDALARKYPNAAQEWIWQYVFPSGSYSVDPRSGRERRHHIDEK 254

Query: 270 --SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K   T +G+ K  + H +R   AT   + G     +    G   V     YT  
Sbjct: 255 LLQRAMKKAVTASGITKFATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314

Query: 326 ADR 328
            ++
Sbjct: 315 LNK 317


>gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 309

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 90/299 (30%), Gaps = 36/299 (12%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKIT 115
             +SP  +P   + L+S Y ++      +  ++ ++     ++   +  + G  +  ++T
Sbjct: 4   RQSSPPARPGDEERLLSLYLRTLS----SPQTQKTYNTEIRAFLSYLRERLG-KNLGEVT 58

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + I    E     + P++A + LT++R    +      +      +++   +     + 
Sbjct: 59  AEDISLYREHVTGAYAPATAAKKLTALRRFLTFTY-MGGITRVNPEALKFFAKSPRVRQD 117

Query: 174 WTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---I 224
            +   + + +             +       +   GLR ++     V   + +  +    
Sbjct: 118 PSYNILTEEELSRMLSAARADNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLR 177

Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSI 271
              K   +  V +     +L+                             + +       
Sbjct: 178 VRGKGDKVRNVPVSPELWRLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQN 237

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             K     AG+NK  S H +R    T  A   A    +    G         Y + A+ 
Sbjct: 238 IVKKYVRAAGINKPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIRRAEE 296


>gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2]
          Length = 398

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 111/326 (34%), Gaps = 15/326 (4%)

Query: 20  KIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + ++  RK     G    +               +   T  R   +  R  P TL+   S
Sbjct: 55  RYLWQGRKRAISIGHWPEIDVTTARKIATEMKRQIATGTDPRYERDKCRAIP-TLQEAFS 113

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAI 134
           +Y           +     + + D I    G+    +IT +H+     S   T  P++  
Sbjct: 114 QYY-FPWAKLHKKSWNKDEQRFRDHIAPVMGNLLLNEITPRHVTHLQSSLCETCQPATNN 172

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-- 192
           + +  ++ L +W++R E VA NP  +    +      R +++ ++++     SE +    
Sbjct: 173 RVIALLKALLRWSLRHEMVATNPAANTPLLRENNARQRYFSETEIRRIFEAASEDNSRVA 232

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              +    L           +     LQ     +   K GT   V L D  +KL+A  P 
Sbjct: 233 SIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLWLPETKNGTGRLVHLNDWAIKLIAELPR 292

Query: 251 GKETFFINNDKQKMNA-TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
                ++   K         +  F+    +AG+       H  R   A +    G T ++
Sbjct: 293 FGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGIYDDEVCIHTCRHSVAALIVSRGGTLYD 352

Query: 307 LMATYGWKTVDQAETYTKGADRIRLG 332
           + A  G +++  ++ Y     +    
Sbjct: 353 VQAQLGHRSIQSSQRYAHLHPQRLKA 378


>gi|28199084|ref|NP_779398.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681811|ref|YP_001829971.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057182|gb|AAO29047.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631921|gb|ACB92697.1| integrase family protein [Xylella fastidiosa M23]
          Length = 339

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELSVLIK 240

Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  +       +       F      AGV K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 119/395 (30%), Gaps = 69/395 (17%)

Query: 17  RHGKIIYYFRKG-----HGRRIRLPYP----------HESTFIPAYMSALTGSTPKREYI 61
           + G+  +           G R RL              +          L     +    
Sbjct: 8   KRGENTWRLTIDLGYNQDGSRNRLRRKVVVEDKTLLKTKKKLREHLEDELAKFKQEVLSG 67

Query: 62  NSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
              + +  TLK  I  E+  + ++   +L+  +  ++  +  + I+   G      I T 
Sbjct: 68  EYIKPEKMTLKQFIENEWEPKYASKPKNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTL 127

Query: 118 HIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           HI + ++                +P +       ++ +   A   + +  NP + V++PK
Sbjct: 128 HIVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPK 187

Query: 166 RKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            +   +  + +++ ++     + E  + RL     +  G R  +        +     +I
Sbjct: 188 VEQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTI 247

Query: 225 KTQKTG-----------------TIITVELPDGFMKLLAMTPIGK--------------- 252
             +K+                  +I T+++P  +M  L                      
Sbjct: 248 SIRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGD 307

Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
               F     +    +  S W+     +  + +   H +R  SAT+  +AGA+   +   
Sbjct: 308 RRYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQR 367

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G          Y       ++  + + +      
Sbjct: 368 LGHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 400


>gi|319654649|ref|ZP_08008730.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
 gi|317393715|gb|EFV74472.1| hypothetical protein HMPREF1013_05352 [Bacillus sp. 2_A_57_CT2]
          Length = 406

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 112/365 (30%), Gaps = 56/365 (15%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  ++I      +        +A+             RK P   + +  E+  +     
Sbjct: 29  TGKRQQISRRADTKKEAEKKVTAAIRKLQEDGIDEKKVRKLP--FEDVAWEWLSTYAKSK 86

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143
           +  ++    E     ++R     +  K+T +    I + ++ +++  ++      +  ++
Sbjct: 87  VKSSTVRVREKEIKILLRYIAKVNIDKVTPRMHQKILNDLDDKEYAKTTIEGVHVTANMI 146

Query: 144 FKWAVRQEYVAINPCLSVERP---------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           FK+A++++    NPC     P         + KT       ++++ +F            
Sbjct: 147 FKYAIKEKMRKDNPCTGSVIPVKKLTVEDIENKTIEEEYLERDELFEFLEAVKRYGLEFD 206

Query: 195 AFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIK-------------------TQKTGTII 233
              F L  +SG+R  + C      +      I+                    +  G+I 
Sbjct: 207 LERFYLLAFSGMRSGELCALKWSDINWETNEIRITKTLYNPDNNMKKYELTPPKTPGSIR 266

Query: 234 TVELPDGFMKLLAMT-----------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
           T ++ D  + LL +                         F   +          +  +  
Sbjct: 267 TFDIDDDIIDLLKVHKKRQNKIKLANRLKYPDYHDANFIFCRENGYPFIQKNIIVRMERI 326

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLG 332
             K  + K  + H  R    ++ A+AG     +M   G   +      YT   D+  +  
Sbjct: 327 LKKTSIEKHATPHIFRHTHISMMAEAGIDLPTIMKRVGHDDMKTTMRVYTHVTDKMKKNA 386

Query: 333 IKNSR 337
            +  +
Sbjct: 387 AERIK 391


>gi|254776421|ref|ZP_05217937.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 364

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 116/364 (31%), Gaps = 38/364 (10%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           F+   +   G  +Y   Y   G G R       +      + + +    P+R    +   
Sbjct: 3   FIRARQHNDGTTVYGVTYRLGGRGSRQSSVTFPDEKQAKRFCALVDSHGPERALELAGIA 62

Query: 67  KPT------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
                    T+   +  +  S     +   +   ++ Y    I    G     K+T + I
Sbjct: 63  DTQRAVSALTVAEWLDRHIGSL--TGVEKKTISEYQRYATRDIGPPLGAIPLGKLTREDI 120

Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              V           +       +    K AV   ++A NPC  +  P+ + + +   T+
Sbjct: 121 AEWVNEMFEAGAAGGTIENKHGFLSGALKRAVEDGHLAANPCQGIRLPRTEEQEMVCLTR 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++ Q  K+ +S   +P +  EFL+ SG R S++       +     +++  +        
Sbjct: 181 DEFQTLKAAFSAHYRPLV--EFLVASGCRASEALALRPSDVDREASTVRIARAWKRAGSG 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKA-- 280
                     +V   +    +L     G E  F   +   +    +    +     KA  
Sbjct: 239 YELGPPKTKRSVRTINVPKSVLDQLDYGGEWLFTGTNGGPVRIYSWRSNVWYKSLAKAQK 298

Query: 281 -GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335
            G+ K    H +R   A+     GA    +    G +++    + Y     +   +  + 
Sbjct: 299 NGLAKRPRVHDLRHTCASWMIQNGAPLPLIRDHLGHESIKTTVDCYGHLDRNDHVVAAEA 358

Query: 336 SRRI 339
             ++
Sbjct: 359 IGKM 362


>gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408]
          Length = 298

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 85/281 (30%), Gaps = 37/281 (13%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
           LIS Y         L+ ++  ++++   Q                ++ S +E    +   
Sbjct: 5   LISTYLDFCKTHKRLSSHTIRAYKNDLMQFYNS---------DYDNVESYIEQLTQSNIK 55

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK----- 183
            ++  + +  M+V + +   Q  +  NP   +    + +    +    + ++        
Sbjct: 56  TNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYLEQ 115

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
                          +  L    LL +G+R S+ C   ++ +   N    I  +     I
Sbjct: 116 KVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLQIIGKGKKERI 175

Query: 234 TVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                     LL               F   +  + ++     +  K    +   +++  
Sbjct: 176 LFLGDQTTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRTIT 235

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H  R   AT+  D+      +    G  ++   + YT  +
Sbjct: 236 PHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|319939540|ref|ZP_08013900.1| integrase [Streptococcus anginosus 1_2_62CV]
 gi|319811526|gb|EFW07821.1| integrase [Streptococcus anginosus 1_2_62CV]
          Length = 381

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 101/371 (27%), Gaps = 48/371 (12%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G  +Y         +  G++++          + A                 
Sbjct: 3   ITELKKKNGTTVYRSSVYLGVDQITGKKVKTSVTGRTRKEVKAKAQQAQIDFKLNGSTVK 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
              +  T + L   +  S     +   +  + +    + +I   G     KIT  +I+  
Sbjct: 63  KEMQVRTYQELADLWLSSYQLT-VKPQTFRATQRMLYNHLIPAFGTMKLNKITVYYIQDF 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
           +              +  R + ++ V  + +  NP   V  PK      +          
Sbjct: 122 INDLSKELVHYSVVHSINRRVLQYGVSLQLLPFNPARDVILPKVLKRENKVIKFIAPENI 181

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
               + M+   +         + +  LL +G R  +        +     +I   K    
Sbjct: 182 KALMDYMESLSNQKYGYYLDYVLYSVLLATGCRFGEVVALEWSDIDLKEKTISITKNYNR 241

Query: 233 I--------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +                           +         L +        F    K+  N 
Sbjct: 242 LLKLIGTPKSKAGVRVISIDKKTVNMLRLYKNRQRQLFLEVDSQAPAVVFATPTKEYQNM 301

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                    +  +    + + H  R   A++  +AG +  EL    G  T+      Y+ 
Sbjct: 302 ATRQESLDRRLKEINCPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLATTMDIYSH 361

Query: 325 GA-DRIRLGIK 334
            + D+ +  + 
Sbjct: 362 LSKDKEKEAVS 372


>gi|313646796|gb|EFS11254.1| integrase [Shigella flexneri 2a str. 2457T]
          Length = 371

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     F   +G+R +           A                       T +   
Sbjct: 5   RRGEIWYASFTLPNGKRFKQSL-GTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S    +S     ++       R IT   I S ++   +       
Sbjct: 64  VRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++    L+ ++ L + A  +E+  ++    ++ P+ 
Sbjct: 120 RLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           K + IR     + Q+      E    +   EF L +GLR S+      Q +         
Sbjct: 179 KNKRIRWLEPHEAQRLIDECPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +     +                    +
Sbjct: 237 NPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG++    H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 TAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612]
 gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612]
          Length = 412

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 118/360 (32%), Gaps = 57/360 (15%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
              + + +R          F               + I +  +    L+  ++++ +++ 
Sbjct: 63  RVLRKNRKRKNSSGVITEKFQE-------------KEIINSEEYSAFLREWLTDWLENSK 109

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQF 136
              +  +S   + S   + +I   GD+  +++T+  I++          +  + ++  + 
Sbjct: 110 KTEIKKSSYTQYSSVVYNHLIPTIGDYRLQEVTSDVIQNYVKAKLSHHQKALSSTTVRRH 169

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRL 194
           ++ +    K AV+   + +NPC+ V  P  K   +  ++KE+ Q+ +   +  +      
Sbjct: 170 ISILSSALKQAVKLGIITVNPCIDVCIPAAKKRKMDVFSKEEYQKLEKTLYCDQDKVKAT 229

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------------------T 229
           A    L +G+R  +        +     ++  +                           
Sbjct: 230 AVLLALKTGVRLGELAALRWCDIDFEEKTMMVRDAVHRVNTSEEAGGKKTTMIFEGTKSY 289

Query: 230 GTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            +   + +      LL        +  E  F++     ++   +  +F      AG+ K 
Sbjct: 290 YSERNIPMNHEIYTLLKGYEAILSVKGEFVFLSKKGSFIDPRVYQTYFADVLKNAGIKKR 349

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK-GADRIRLGIKNSRRISSV 342
             H +R   AT +A        L    G   +      Y     ++ R+      ++S +
Sbjct: 350 NFHILRHTFATRAASKNMQLAVLSRLLGHSNITVTLKSYIHPLTEQDRI---EMNKLSEI 406


>gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 83/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGVRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +    
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHTY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4]
 gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4]
          Length = 310

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 37/292 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITT----KHIRSGVESRKHT 129
           ++    H+    +  +   + S      R     D D+R+ T     + +   +  R   
Sbjct: 14  DFLAHLHYTKGYSQGTCYGYNSDLGIWGRWLEEADKDWRQATHVDTEQFVAWQMRERGTK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------------- 175
                +  + +   +KWA++   V  +P    ++PKR                       
Sbjct: 74  AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWLEKEEQLAFQEAVRRV 133

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
                    +  +   +   +    F  +L SGLR S++    ++ ++      K     
Sbjct: 134 DDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIRDVRIVNGVAKSVRVI 193

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ++    +       F   L         F     ++         + +    +AG+
Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAPGEKPPGPHAVRTYLRRLIERAGI 253

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +K  + H +R   AT   +AGA   ++    G   +   + YT      R+ 
Sbjct: 254 DKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTH-VSEERMA 304


>gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme,
           catalytic core [Bacillus licheniformis ATCC 14580]
 gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580]
 gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA
           breaking-rejoining enzyme, catalytic core [Bacillus
           licheniformis ATCC 14580]
 gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 352

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 98/314 (31%), Gaps = 40/314 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109
                P  ++      +  TL  +  +         L   +   +    + +   +    
Sbjct: 4   RGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAEIKG 63

Query: 110 ---DYRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKW 146
                  I  +  R  +                         +P  A   L +MR +F +
Sbjct: 64  LSTSVESIDVEFARQYMTYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAVFTF 123

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYS 202
            +++  ++ NP   + + K+    I+  + E+M+Q     ++      +  +    L+ S
Sbjct: 124 CIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNKRKFSEFRDYVVMMCLINS 183

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL------AMTPIGK 252
             R  +     ++++   +  I       KT     + L    M+LL             
Sbjct: 184 MCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRFKPS 243

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
           +  FI  +  ++    F       A +AG+NK    H  R  +A++   AG     L   
Sbjct: 244 KYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTI 303

Query: 311 YGWKTVDQAETYTK 324
            G K +     YT 
Sbjct: 304 IGHKDLRMVLRYTH 317


>gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 90/298 (30%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRK 127
            I ++R+   + ++  ++  +  +          +     Y   T   +         R 
Sbjct: 26  YIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEEIEKEPYSLTTHDFVIFFNMLNNRRN 85

Query: 128 HTPSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            T  +  ++   ++V ++           +E +        E+    T     + +   +
Sbjct: 86  CTVRTQNRYFNLLKVFYRLLKYDNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238
              S      +  L    L  +G R S++     +        F I+  KT    TV + 
Sbjct: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALNIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--------G 281
              +++L                    +  + +++     +  FK    K         G
Sbjct: 206 QETVEILRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIQEG 265

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                H +R   AT   D G     +    G ++++    Y+   +R    + N +++
Sbjct: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKDGMLDNIQKL 323


>gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212]
          Length = 333

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 94/329 (28%), Gaps = 32/329 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+RIR       +   +Y   L  S    E+ +    +   L
Sbjct: 4   RKIPSGKWLCECYPYGASGKRIR-KQFATKSEALSYERRLMNSRVGDEFQDGSGPR---L 59

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             LI+ + +     +L+       +   + I  + GD    +       +  E R     
Sbjct: 60  SELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGEW 116

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D  
Sbjct: 117 NPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDEI 176

Query: 181 QFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      + S+ +   +     L +G R S++       +     +    K     TV +
Sbjct: 177 ERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                 +L        +              F    K    +    +  H +R   A+  
Sbjct: 237 SPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELLDGQLTHVLRHTFASHF 287

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 288 MMRGGNILVLQKILGHSDIKMTMRYAHFA 316


>gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 339

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 23/269 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130
           +  +  S    +   N+   + +   +++   G      IT   +R       E      
Sbjct: 57  VKMFVASKKAVNRQENTLKQYTTEICKMLDFLG-KRIEDITAMDLRYYYGVMREQHGIKM 115

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++    L  +   + +   +E V  NP   V   K      +P+++E+M+  +   +   
Sbjct: 116 TTMQTRLHYLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTV-L 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP 249
           + R   EFL  +G+R S+     V  ++      I   K      V L D     L    
Sbjct: 175 RDRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLKRYL 234

Query: 250 IGKETFFIN---------------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
             +                         ++        F+    +AGV K   H  R+  
Sbjct: 235 KERMKEEGITEEELENKPLFATLDQPHARLTVAGIQYMFRQLGRRAGVKKVHPHRFRRTI 294

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           AT   + G    ++    G + +D    Y
Sbjct: 295 ATDLLNRGMPVEQVSKLLGHEKLDTTMIY 323


>gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 291

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 24/283 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESRKHT 129
            +I +++ S      +  +  S+       I   GD        +   ++ S       +
Sbjct: 3   QVIEDFKISLVEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNGTLQRFYVVSYKNFLVES 62

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------- 179
               ++  + + S+  L ++ V    +      + +   +   G     +          
Sbjct: 63  NYEVATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVYSDKEVERI 122

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL 237
               ++      + ++    LLY+G+R S+ C   ++ +    +SIK    G     V L
Sbjct: 123 LFYIQNEEKVSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIKIYGKGGKFREVPL 182

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAHGV 289
                 ++      ++    +++   +           +   +      G+      H  
Sbjct: 183 KFDLADVIKEYIKDRDYNVKDSEYLVIGQRGALKRDAINTMLERLTKDIGMVNKLKPHTF 242

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
           R    T   + G     +    G  +VD   T Y   +   +L
Sbjct: 243 RHTFCTRLINRGVPISTVSKLAGHSSVDTTATFYINSSREEKL 285


>gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
 gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597]
          Length = 295

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 88/283 (31%), Gaps = 41/283 (14%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127
           LIS Y         L+ ++  ++++   Q    + D+D       ++T  +I        
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQF--YNSDYDNVESYIEQLTRSNI-------- 54

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--- 183
              ++  + +  M+V + +   Q  +  NP   +    + +    +    + ++      
Sbjct: 55  -KTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYL 113

Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
                            +  L    LL +G+R S+ C   ++ +   N    I  +    
Sbjct: 114 EQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKE 173

Query: 232 IITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            I          LL               F   +  + ++     +  K    +   +++
Sbjct: 174 RILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRT 233

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H  R   AT+  D+      +    G  ++   + YT  +
Sbjct: 234 ITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 391

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 107/381 (28%), Gaps = 57/381 (14%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
                Y    G     G+   +          A   A       R   +      +T K 
Sbjct: 9   KNNWRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRN-GDYIAPSSSTFKQ 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           +  ++ K      + V+S  + E      I+       + I     +  V+    +++ +
Sbjct: 68  VAEDWIKQY-ANDVKVSSVRAREKAIQHAIQHFNTKPIQTIKKHDYQRFVDDMSIQYSKN 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + S  ++FK+A   + + + P   ++RPK+K         E  ++F         
Sbjct: 127 YVDSIVASTNMIFKYAYDMKLIRVLPIEGIKRPKKKVSVEELEDSEIHKKFLEKDELFQF 186

Query: 192 PRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             +A                 Y+G+R  +        +     +I   KT          
Sbjct: 187 LEVAKNHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKH 246

Query: 240 GFM-------------------------------KLLAMTPIGKETFFINNDKQKMNATQ 268
             +                                      +     F + +   +   +
Sbjct: 247 YQILTPKTESSIGKISVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIKK 306

Query: 269 FSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            S W +A   K  +   + S H  R     +  +AG    E+      K ++     Y K
Sbjct: 307 LSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAK 366

Query: 325 GADRIRLGIKNSRRISSVVDS 345
             +  +     S++ S ++++
Sbjct: 367 ITNSYK--KDASQKFSKLMEN 385


>gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
 gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas
           sp. SKA14]
          Length = 329

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 12/302 (3%)

Query: 26  RKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            +  G+R R               SA         +      +   L+  +  + +    
Sbjct: 17  WRDGGKRFRPSIGRVSPREAEEIRSAREAEL---RHGVRIISRAPLLRDFLDVWLEWYKA 73

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140
                 +    +S    I++  G      +    + +    R    K  P +  + +  +
Sbjct: 74  EH--PTTHGKAKSELRIILQNLGHRPIDTLRPIELEAYKTQRLVKDKMAPETVGKEVRRL 131

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +   +  V+ + +  NP   ++ P+        +  +   Q     +        + F+ 
Sbjct: 132 QAALRCGVQWKELDANPFEGIQAPRGVRSVAVRFYTKTAMQQLYAANAARAN--LWRFMA 189

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           ++G+R  +      +++      +++              + ++   T        + + 
Sbjct: 190 HTGIRRCELMHLRHENVVAGRLLVESDPDEDGDGRTKSGKWREVPLNTHAAAALVELPDP 249

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    S WFK  AT AGV  S H +R         AG     +    G       E
Sbjct: 250 LVSVHKDTVSDWFKDDATAAGVGGSLHRLRHTFCAHMVMAGVPLRRVQILAGHADYATTE 309

Query: 321 TY 322
            Y
Sbjct: 310 KY 311


>gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 351

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 87/319 (27%), Gaps = 42/319 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR           A+          + ++   +    +L  LIS +  +      
Sbjct: 24  KRGKRIR-KKFATKGEALAFERHKLEEIQDKPWLGEEKD-KRSLNELISTWYNAHGI--- 78

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSS 132
              +       +   +      G     + + +      E R            K  P +
Sbjct: 79  ---TLDDGLRRKDAMNHFYECMGKPLATEFSAQLFSQYREKRLKGELARSTRVTKVAPRT 135

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
               L   R +F    R  E+  +NP  SV   K +   +   T++ ++       + S 
Sbjct: 136 LNLELAYFRAMFNELERLGEWKLLNPIKSVRAFKTEESEMAFLTRDQIELLLDECKKSSI 195

Query: 192 PRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
             LA      L +G R S++    +  L  +  +    K     TV +       L    
Sbjct: 196 ECLATVVKICLSTGARWSEAEGLKLSQLTEHKITFIKTKGRKNRTVPISKELYDELPKKG 255

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAH 305
                     +            F+    ++ +        H +R   A+     G    
Sbjct: 256 KSGLFTACYAE------------FRRALKRSEIELPPGQLSHVLRHTFASHFMMKGGNIL 303

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G   +     Y+ 
Sbjct: 304 VLQRILGHTDIKMTMRYSH 322


>gi|168239055|ref|ZP_02664113.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194734718|ref|YP_002113567.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710220|gb|ACF89441.1| prophage DLP12 integrase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288225|gb|EDY27610.1| prophage DLP12 integrase (Prophage QSR' integrase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 387

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     +    G+RI+      +    A                       T +   
Sbjct: 5   RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDKRKAELWRVDKLGDFPEVTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S  + +      +        + IT   I + V   ++       
Sbjct: 64  LRWLEEKADKK----SLDTDKGRMGFWLEHFEGVRIKDITEAKIYAAVSRMQNRKVKEIW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   S+  + L  M+ + + A  +++  +     ++ P  
Sbjct: 120 QQKVESAKRKGKEAPVFEPKPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKIPSV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           + + +R    E+ ++      E    R   +F L +GLR S+      Q +         
Sbjct: 179 RNKRVRWLEHEEAKRLIDECPE--PLRSVVKFALATGLRRSNIINLEWQQIDMQRRVAWV 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   K+L         +   + K+ +                  
Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRGQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDDQ 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + A   +AG+ +   H +R   A+    +G     L    GW++++    Y       
Sbjct: 297 RAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 112/372 (30%), Gaps = 42/372 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   + G   Y F    G          +T              + +     ++  +T
Sbjct: 4   IKKYTKKDGSAAYMFNAYLGVDPLTGKSRRTTRRGFRTQKEARLELEVDTKGFVKQNYST 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            K +   +       ++   +    E  F   I+ + G+    K+T    +  V      
Sbjct: 64  FKDVYELWYAQY-VNTVKPITAGHTERMFRLHILPEFGNIKINKLTKLMCQKAVNKWS-K 121

Query: 130 PSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWTKEDMQQF 182
             SA   L S+   +  +AV Q+ + INP   V  PK+        +     ++      
Sbjct: 122 EYSAFYLLKSITQKMLHYAVAQDIIDINPMQYVVMPKKNRTNETKKKQFLELSELKDFLA 181

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------- 233
           ++  +   Q  L F  L ++GLR  +      + +  +   +   KT T I         
Sbjct: 182 EARETLNFQDYLIFRVLAFTGLRKGELYALTWEDINISYKQLTVNKTLTRIGKEYTISTP 241

Query: 234 -------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                               V   +   +LL      K         +K N   +     
Sbjct: 242 KTKASNRTIGLDDTTVSELIVWKKNQKQELLKYGFKTKSNDKQLIFHRKNNTLHYPEHIN 301

Query: 275 AKAT-KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332
              + +   + S H  R   A++  ++GAT  ++    G   V+     YT         
Sbjct: 302 VLLSSEMKTSLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVT--KSSE 359

Query: 333 IKNSRRISSVVD 344
                ++S+  +
Sbjct: 360 KNAIEKLSNYAN 371


>gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 409

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 24/296 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSG 122
            T    ++E+RK       A ++   +          +       D  ++++    I   
Sbjct: 111 QTFDEYLAEFRKRVG-KDRAYSTYEDYCLRRRRLAAFLEYEYHVKDIPFKELNRNFIEKF 169

Query: 123 VESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           V         A   +++    +R++   A +  ++ ++P       + K    R  +  +
Sbjct: 170 VVYLSTVKGLASGTISAGVKKLRLMTYTAYKNGWILVDPFAGF-HVRPKYAERRYLSASE 228

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R  F F  ++GL  +D  +     +  +             T 
Sbjct: 229 LQAVMDVELPNYRTGINRDVFVFCAFTGLSHADVVKLTHADIHTDYNRNHWIIDKRQKTG 288

Query: 236 ELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
                      +++                 K      ++  +  A  AG++ +   H  
Sbjct: 289 TQFRVKLLPIAEIIYDRYKNLHLEGNKVFPIKRYYKTMNMSLRHVARLAGLSFNPTMHMA 348

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
           R   AT      G     +    G K +   + Y +  +    R     S ++ S+
Sbjct: 349 RHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKIGRDMAALSEKLDSI 404


>gi|255020438|ref|ZP_05292504.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970151|gb|EET27647.1| site-specific recombinase, phage integrase family
           [Acidithiobacillus caldus ATCC 51756]
          Length = 390

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 82/322 (25%), Gaps = 17/322 (5%)

Query: 18  HGK-IIYYFRKGHGRRIRLPYPHESTF--IPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            GK      R+     +   +  +       A + A   +    +       +  TLK  
Sbjct: 7   SGKFWRAQVRRRGYPSLSATFDTKREALQWAAQVEARLETQTPAQVYKKVEVRELTLKAA 66

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              Y +     S A  +     S                 +    +   + + +    SA
Sbjct: 67  FERYTREI-LPSKAPRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEKENRSA 125

Query: 134 IQF---LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                 L  +  L+  A ++       NP   V +P+      R +   +  +     + 
Sbjct: 126 NTIRLMLAVLSHLYTIARKEWGYVDLINPVELVRKPRLPEGRDRRFVGNEEDRLLEACAR 185

Query: 189 GSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMK 243
            +          L + +R  +        +     +IK       T    TV L +    
Sbjct: 186 KNPELADLVIVALETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTRKGRTVPLSERAED 245

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
            L                           F      AG+ +   H +R  + +   + G 
Sbjct: 246 ALKRQRARHNGHGNRVWSYA-TQDGVRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGL 304

Query: 303 TAHELMATYGWKTVDQAETYTK 324
            A  +    G KT      YT 
Sbjct: 305 NAAVVQGITGHKTAQMLARYTH 326


>gi|228477797|ref|ZP_04062425.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|322374163|ref|ZP_08048696.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|228250489|gb|EEK09703.1| site-specific recombinase, phage integrase family [Streptococcus
           salivarius SK126]
 gi|321276868|gb|EFX53940.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 377

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 111/375 (29%), Gaps = 58/375 (15%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +T  +T+ GK       G      +RIR+      +   A    L       E       
Sbjct: 1   MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRVVELKEKQFD 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
              T   L     +        V+     R ++E     I     + +  K+T  HI   
Sbjct: 59  FVVTTDMLFDLLEEDDLKNGRKVSYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEF 115

Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            E  K  P           ++  + L  ++ +F   +R+  +  NP  ++ +   +   I
Sbjct: 116 REYLKTKPKKQNENEVLSYNTINKVLILLKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDI 175

Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ--------------- 215
           + W+ E+  +F+    +      L F    ++G+R  +                      
Sbjct: 176 KFWSIEEFTRFRGLIRDDEISYDLFFVIAFFTGMRMGEILALNWNDINLLTNTIYVTKTV 235

Query: 216 -HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQ 262
             + N  +   T+       + +     ++L    + ++               I +   
Sbjct: 236 YFVNNTSYINTTKTRSGTRNITINQKLAEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPI 295

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
            +        FK    +         H +R   A++  + G     +    G  ++    
Sbjct: 296 SITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTI 355

Query: 320 ETYTKG--ADRIRLG 332
           +TY+    + +  L 
Sbjct: 356 DTYSHLYPSKQKTLA 370


>gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 398

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 7/210 (3%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +F  ++R  F       Y   N   +V+            T E++Q       +    +
Sbjct: 192 NKFKAALRQAF----EDGYTNRNYATAVKGFAMGETTREYLTYEELQNLAKAECKHQMLK 247

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            AF F   +GLR SD  +     +++     +          +               ++
Sbjct: 248 NAFLFSCLTGLRWSDVNKLTWSEVRDEEEGSRLVFKQKKTAAQEYQYLSDQARSILGDRK 307

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
                  +       F+        +AG+ K  + H  R   A +  + GA  + +    
Sbjct: 308 QENARVFQGLKYGAHFNAEILRWCMRAGITKHITFHSARHTHAVLLLEHGADIYTVSKIL 367

Query: 312 GWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340
           G K +   + Y K  D + +       ++ 
Sbjct: 368 GHKEIRTTQIYAKIVDTKKKEAAYLIPKLE 397


>gi|317506246|ref|ZP_07964065.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316255492|gb|EFV14743.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 444

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 101/387 (26%), Gaps = 76/387 (19%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ + G   Y    G     G+R +           A  +        R+ ++  R    
Sbjct: 6   KKAKGGTWFYCVDLGPDPVTGKRRQERKRGFRIKDEAEDALTERLAEIRQGVHVDRS--M 63

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG------ 122
           T    + ++  +     L   + +S+  + +  ++   G    R +   H+         
Sbjct: 64  TTAQYLRDWIDAKEESGLRAKTVLSYRQHIEAHLVPHLGHIKLRDLRATHVEKMLREVAK 123

Query: 123 ----------------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                              ++ +PSS  +   ++      A R+  ++ N  +  +RP  
Sbjct: 124 PPKAPEPGEKIAKGKRRNPKQLSPSSVRRVYATLSSALGAAKRKRLISFNAAVDADRPAA 183

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
               +RPW   D+  F    + G +    FE    +GLR  + C      +      I  
Sbjct: 184 NRPKVRPWEPRDLGAFLDH-AAGERFGPMFEVSALTGLRRGELCALRWDCVDLERNQIVV 242

Query: 226 -------------TQKTGTIITVELP------------------------------DGFM 242
                                                                   D   
Sbjct: 243 REQLVAIPSAGIICPYCSAEHKQFRFSTPKTDSGESRVVDLDAATVGVLMAQKLAQDSER 302

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
           +      +     F   D   +     +  F       G+ +   H +R   A++   AG
Sbjct: 303 EEWGDLYVDHGLVFAREDGNPIPPDDVTEKFNKLTDDLGLRRVRLHDLRHGQASLMLAAG 362

Query: 302 ATAHELMATYGWKTVD-QAETYTKGAD 327
                +    G       ++TY    +
Sbjct: 363 VDMAVVSKRLGHSRHAFTSDTYAHLLE 389


>gi|220903503|ref|YP_002478815.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867802|gb|ACL48137.1| integrase family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 343

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 91/317 (28%), Gaps = 15/317 (4%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTT---- 70
            ++G     +R    +     Y         A          ++      ++   T    
Sbjct: 6   KKNGTWYVQYRIPGEKYPLREYTGIGEEGKTAARELDRQVKEQKAKGAVTKRVQRTGRIH 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L  L   Y         +       E+ F  +I+ +        +    + +       T
Sbjct: 66  LDQLAQAYLTERKLSGKSAQWLEEMETLFNKKILPRLCFCPVDDLKYPDVIAMAAEAWPT 125

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            S  +  ++L  ++  F +  + E  A NP    ER K        ++  D+ +     +
Sbjct: 126 VSLATRQRYLGYLKAAFNFGRKHELTATNPLDKWERQKEPRLEF-NFSVPDLLKLYDCAA 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKL 244
                 +  E+ + +    S+      +H+      IK   T T      V +   F   
Sbjct: 185 PHLAWAIKVEWHIGTRPGRSELFALRWRHIDFESRIIKIYGTKTDGSFRAVPMLPHFEAA 244

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
           L          F+ + K +         F+    +A +  +   + +R   AT   + GA
Sbjct: 245 LKEKRKQALGEFVVDYKGRQVKK-LQTAFEGAQRRANLGYHVRLYDIRHLFATTMLNGGA 303

Query: 303 TAHELMATYGWKTVDQA 319
               +    G   V   
Sbjct: 304 DHAAVAKLLGHSAVSTT 320


>gi|257064609|ref|YP_003144281.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792262|gb|ACV22932.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 356

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 103/351 (29%), Gaps = 39/351 (11%)

Query: 18  HGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +G     ++Y    + RR  +    +S        A                        
Sbjct: 8   NGTWTAQVWYRDSRNRRRHTIKRGFKSEEEANEWEA-------SFSKADSENMSMKFSQF 60

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-----H 128
           ++ Y +      L  ++  + +     +I+   G+    +ITT  +              
Sbjct: 61  MNLYTEDMRPR-LRESTWHTKQHMIDKKIMPFFGEMSMDEITTIDVIRWQNEMMSEKGPK 119

Query: 129 TPSSAIQFLTS----MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               A  +L +    +  +F  AVR   +         +   ++ + ++ WTKE+  +F 
Sbjct: 120 GTGYAETYLRAVNNQLNAIFNHAVRYYGLPKSPCARVDKMGSKQGDEMKFWTKEEYLKFA 179

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQK 228
               +      AFE L + GLR  +        +                +   ++   K
Sbjct: 180 EAIMDKPDSFTAFEILYWCGLRVGEMLALTPSDINLERSTISVTKTFQRIHGRDTVTEPK 239

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           T   I +     F+       I       ++       T+          ++GV +   H
Sbjct: 240 TKKSIRLVTMPKFLSEEIAEYIASLDVGDHDRLFPFTKTRMHHEMDRGCKESGVKRIRIH 299

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
            +R    ++  D G +A  +    G ++ +    Y     ++ R       
Sbjct: 300 DLRHSHVSLLIDMGFSAVAIADRVGHESANITYRYAHMFPNKQRDMASALD 350


>gi|227496487|ref|ZP_03926771.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
 gi|226834014|gb|EEH66397.1| phage integrase family protein [Actinomyces urogenitalis DSM 15434]
          Length = 437

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/389 (12%), Positives = 107/389 (27%), Gaps = 62/389 (15%)

Query: 2   TPSLRLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           TP  R        R + G++++   FR   G                +++ +        
Sbjct: 28  TPKPR--------RLKSGQVVWDVQFRPTPGSSPTREVFDTLPAAKQFVTLIDRVGGAAA 79

Query: 60  YINSPRKK-----PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
                          TL   I ++       S+   +   ++   + ++    GD     
Sbjct: 80  RAARDMATMSGTSVPTLNTAIDQHLDELRA-SVTAGTIRRYQQIANTRLRPTLGDLPCDL 138

Query: 114 ITTKHIRSGVESRKHTPSSAIQFL-------------TSMRVLFKWAVRQEYVAINPCLS 160
           IT   +   +  ++ TP    +                 +  + +  VR   +  N    
Sbjct: 139 ITRPVVTQWLAKQRETPVQRGRTKGSTPSYKTLRGAQALLSSVLEHQVRAGTIPTNVARG 198

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++ P+      + +               +   L    L   GLR  ++       L  +
Sbjct: 199 LKLPRDGIVRDKVFLTPTQFATLLDCVPDAHKPLVS-TLYGLGLRFGEATALTPADLDLD 257

Query: 221 IFSIKTQKTGTI------------------ITVELPDGFMKLLAMTPIGKET----FFIN 258
                 + T                      TV +P   + +L      K+     F   
Sbjct: 258 AAQPVVRVTKAWKEGKKGSYLGSPKTRRSIRTVTVPPSLIPILREQARKKKPGALLFPNA 317

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316
             +Q  +    +  ++     +G++ +   H +R   A+    AG     +    G +++
Sbjct: 318 YGEQITSGAFHARVWQPAVAASGLDPAPRVHDLRHSHASALIAAGIPLPVIQRRLGHESI 377

Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSVVD 344
               + Y        L  +     +S +D
Sbjct: 378 QTTVDVYGH------LAPEAYAGAASAID 400


>gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 342

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 88/332 (26%), Gaps = 38/332 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G  I        +  R+       F     +        +      ++   TLK 
Sbjct: 4   RKNPAGGWICELYPNGAKGKRIR----KKFATKGEALAFEQHTVQNPWQEEKEDRRTLKE 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+  + ++     L    +     +        G+   R    +      E R       
Sbjct: 60  LVDSWYRAHGIT-LKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + +P +    L   R +F    R  E+   NP  ++   + +   +   T + + 
Sbjct: 117 SNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTHDQIS 176

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           Q     +    P L       L +G R S++       L     +    K     TV + 
Sbjct: 177 QLLGECNRHDHPDLETVVRICLATGARWSEAESLKKSQLAKYKITYTNTKGRKNRTVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294
               + L     G+                    F++   + G+   A    H +R   A
Sbjct: 237 KELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFA 284

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     L    G   +     Y   A
Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 376

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 84/269 (31%), Gaps = 23/269 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130
           I  +  S    +   N+   +      ++   G      IT   +R       E R    
Sbjct: 94  IRMFVASKKAVNRQTNTLKQYTREICNMLDFLG-KRLEDITGMDLRYYYGVMRERRGIKM 152

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+    L  +   + + + ++ V+ NP   V   K +    +P++  +M+  ++  SE  
Sbjct: 153 STMQTRLHYLSSFWDFMITEDLVSSNPVKKVGLLKIEKTIKKPFSAAEMEALRTSCSE-L 211

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP 249
           + R   EFL  +G+R S+     V  ++      I   K        L DG    L    
Sbjct: 212 RDRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKFYLRRYL 271

Query: 250 IGKETFFINND---------------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
             +                         ++         +    +AGV     H  R+  
Sbjct: 272 RTRCENEGMTMEELQGRPLFATLDRPHGRLTVAGVQYMLRQLGRRAGVEGVHPHRFRRTI 331

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
           AT     G    ++    G + +D    Y
Sbjct: 332 ATDLLSRGMPIEQVKEFLGHEKLDTTMIY 360


>gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii
           M21/2]
          Length = 327

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 14/261 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTP 130
            + +  +      +  +   +    + ++   G    ++ITT  +R         R+ + 
Sbjct: 53  AAAFITAKRIEGCSEKTLTYYSKTIEAMLNDVGKSP-QQITTDDLRKYLTDYQTQRRSSK 111

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +   F W   ++++  +P   + + K        +T E ++  +   S   
Sbjct: 112 VTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHKVKTAKIIKETYTDEALELMRDNCST-V 170

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +     + L  SG+R  +      + +  N               V         L    
Sbjct: 171 RDLAIIDLLASSGMRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYL 230

Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +               +++         +    +  +NK   H  R+  AT + D G 
Sbjct: 231 DERSDSNPALFVTLKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGM 290

Query: 303 TAHELMATYGWKTVDQAETYT 323
              ++    G + +D    Y 
Sbjct: 291 PIEQVQQLLGHQKIDTTMRYA 311


>gi|237743743|ref|ZP_04574224.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
 gi|229432774|gb|EEO42986.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           7_1]
          Length = 343

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 107/343 (31%), Gaps = 25/343 (7%)

Query: 11  VTKERTRHGK-IIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V K + +  K  +     G   G++ R              + L G        +     
Sbjct: 10  VYKLKGKRRKCWVARVTVGFVDGKQKR-KIIGTYETRKEAQAELLGYLNNPVLYSGK--- 65

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T K +   +  S +  +++  +  +  +   ++     D   + +    ++   +   
Sbjct: 66  --TFKDVKDLWY-SNYSKTVSDVTLRNVGNQLKKL-EVFNDEKIKDLKLYTLQKFFDDLD 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S +   +++ ++F++A++ E++  N    +E  K +    R     D        +
Sbjct: 122 SAYGSKLALRSALNMIFEFALKNEFIETNRIKFIELGKNEKVVERKIFTTDEINILF-DN 180

Query: 188 EGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             S  R   +         Y+GLR  +      + +      +   ++ TI  +      
Sbjct: 181 LDSDNRFIKKMSYATLILIYTGLRIGELMNLKTEDVDLKNNILSIVESKTIAGIRKVPIS 240

Query: 242 MKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
            K++ +     +         K     N   F   F+       +   + H  R   AT+
Sbjct: 241 EKIINLFKDNIDYSKEYFLYNKKGGQYNYVNFFQQFQTMLELLNLERHTIHDTRHTFATL 300

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337
             +A A +  ++   G       E  YT    + +R  +    
Sbjct: 301 LNNANANSTSIIKLIGHSDFSMTENVYTHKDIEELRKAVNLLN 343


>gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 2/261 (0%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ +++           +      +  +  + +G            R   +  + + ++ 
Sbjct: 54  LLEDWQTDMTIQRREETTISERVRFVSKFHKDTGVQPAHAQVIDIKRWIAQHPEWSTATV 113

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             + T +R  FKW   Q++ + +P + +   +      RP + + + +  +        R
Sbjct: 114 ATYTTHLRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARLLADCRMQPTTR 173

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                     LR ++  +   + + ++ F +   K     T+ L     + LA     + 
Sbjct: 174 ARVLLAACQELRVAEIAKIRGEDIVDSRFLVVNGKGNRTKTLPLHPLIAE-LAKKMPAQG 232

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            +F   +   +++   S        +A V  + H +R +  T  +D GA    +      
Sbjct: 233 FWFPPPNGGHVDSKSVSQVISLAMRRAKVKGTPHSLRHWYGTELSDRGADLAVVQDLMRH 292

Query: 314 KTVDQAETYTKGAD-RIRLGI 333
           K+ +    YT  AD R R  I
Sbjct: 293 KSPNTTRGYTLIADKRKRQAI 313


>gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06]
          Length = 296

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 8/251 (3%)

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
              + +   GD    ++TT  +       +++   S+  + L  +R  F  AV  + +  
Sbjct: 1   MLARFVATVGDKRLDQVTTFDVERWKTVRAKQVRKSTVNRELNIVRGCFSRAVEWKRLVK 60

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +P  +V+  + +   +R  + ++++   +   +     L     L   LR S+       
Sbjct: 61  SPMATVKPFRVENTRLRVLSPDEIRVVLTEAPQDLA--LIARVTLEGLLRVSEVLSLMRS 118

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF 273
            +Q +   +   K   +  V +     + L       G               +  +  F
Sbjct: 119 DIQRDYLVVTHTKNNKVRKVPISSDLRRALLARTHQSGYVFGETRYQGHPATQSTVTQAF 178

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RL 331
           +    + G+ N S H +R   A+     G +   +    GW+++   E YT   D   R 
Sbjct: 179 RRVMARLGIANASHHTLRHTGASSMLADGISVRVVQEIGGWRSLRMLERYTHPTDAETRR 238

Query: 332 GIKNSRRISSV 342
            + ++ R++ V
Sbjct: 239 AVASASRLTGV 249


>gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
 gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2052A-d]
          Length = 372

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 109/358 (30%), Gaps = 38/358 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGST 55
           M     L   + +   ++G+  YYF+       +G+RI        T+  A    +    
Sbjct: 1   MPRKTNLS--IKEYTLKNGQKRYYFKISLGENSNGKRIVTTRRGFKTYADA--DQVYNQL 56

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            + +  +  ++   T+  L   + ++        ++R+    Y + I    G+    KIT
Sbjct: 57  TRVKADDFVKQNQITIDELHKIWFENYKNAVKESSARMEKNVYTNHIKPCFGNQFIDKIT 116

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              ++   + +     +  + +  M  LF++ +R  YV+ N    V  PK+ T   R   
Sbjct: 117 VVALQKWADKKATELVAFRRVIAIMNALFEYGMRLNYVSSNLVKRVLIPKKTTRKRRDIE 176

Query: 176 KEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220
           K    + +         +        F+ L  +GLR S+      Q +            
Sbjct: 177 KNVYTREELELFLKIAKTRSIMQYTFFKILACTGLRRSECLALTWQDIDFENNLLSVSKT 236

Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------S 270
                 S    +T    T          L    I  +    +          F      +
Sbjct: 237 LSSGFNSQLILQTPKSRTSNRKIPISSALRDLLIEYQKQSTSEKLFHTVNDTFLHLSAPN 296

Query: 271 IWFKAKATKAG--VNKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD-QAETYTK 324
            W              + HG R   AT+   +       +    G K ++     YT 
Sbjct: 297 TWLNEIYHAHPELREITVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTH 354


>gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
 gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC
           51196]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 80/283 (28%), Gaps = 35/283 (12%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126
            L+ +Y+        L   S  +++S            +   +  +          + + 
Sbjct: 8   DLLRDYQSYLRVEKGLRPLSCQAYQSDLLLFAEYLESMNTALLDARSEHVAGFLEHLNTH 67

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
                S  + L+ +R  +KW +  + +  +P ++++ P       +   +EDM       
Sbjct: 68  GVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQEDMTAMLDRA 127

Query: 185 --------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITV 235
                         +     E L   GLR S+     V  L  +   +    K      V
Sbjct: 128 RLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVRGKGDKERLV 187

Query: 236 ELPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVN 283
            L    +  L                      F++   + +         +         
Sbjct: 188 PLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLTREYVWKLVRQYGA----- 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S H +R  +AT   + GA    +    G   +   + YT  A
Sbjct: 243 -SPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVA 284


>gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
          Length = 381

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 110/380 (28%), Gaps = 49/380 (12%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + +   + G   + F+         G+ +R    +  T   A    L       E     
Sbjct: 4   IKQYEKKDGTKAWLFQTYLGINPLTGKEVRTTRRNFKTKKEA-QIELNRLLVDFEENGLK 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    T + +   + +S       V        +   I+ K G F  ++IT KH++  + 
Sbjct: 63  QDTNETFQEIYELWYESYKTTVKEVTQLKIEIKFNKWILPKYGKFRIKEITVKHVQKILN 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
                        +++  +FK+A+    +  NPC  V  P R  E  +   K   +    
Sbjct: 123 QWAKMTDQYKVLHSTVSRIFKYAMTLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLE 182

Query: 184 ---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------- 225
                             +    FL +SG R S++       +  +  ++          
Sbjct: 183 ILFQYLESKRSTYRADYDKTLLRFLFFSGCRISEALALNWSDIDFDSNTVTINKTLSQTK 242

Query: 226 -------------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                KT   +     +    +L +        F    K+ +  
Sbjct: 243 YGYKISSPKTKNSYGSLSLDNKTINWLKKWQINQKRYMLTLGITDPTMIFCGIYKEIITK 302

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                        +G+     H  R   A++  ++G +  E+       ++    +TY  
Sbjct: 303 HAIYSRMITICKNSGIPFLGNHVTRHTHASMLLESGVSMKEVQERLRHSSIKLTMDTYAH 362

Query: 325 GADRIRLGIKNSRRISSVVD 344
                +   K   +++  ++
Sbjct: 363 LTKETK--EKTVEKLAEHLN 380


>gi|260433010|ref|ZP_05786981.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416838|gb|EEX10097.1| phage integrase family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 417

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 99/304 (32%), Gaps = 26/304 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I +   +   +K L+ +Y K       + +          + + + GD D  ++T + I
Sbjct: 96  RIEAQLSERDKVKTLLEQYAKRHLSKLRSGS--EVKRRLETEFLPRYGDHDIHEVTKRDI 153

Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +E    +    +A +    +   F W + ++ + I+P   V+   ++    R    +
Sbjct: 154 LELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIPISPVQGVKPVAKEKSRDRVLNDD 213

Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235
           +++ F       G   R A + LL +G R ++        L  + + +  Q+T       
Sbjct: 214 EIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMTDDELHGDAWHLSAQRTKNGREHL 273

Query: 236 --------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                         E  +   +LL  T            + +++     I          
Sbjct: 274 VPLSQAARDVLSSVERIESPSRLLFTTTGRTPICGHFKARNRLSRFMAEIAEAETGEAIE 333

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKN 335
           +   + H +R+ +AT  A  G       A     +         Y +   AD  R  ++ 
Sbjct: 334 IPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDFADEKRKALEA 393

Query: 336 SRRI 339
             R 
Sbjct: 394 WARF 397


>gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           TW-183]
 gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183]
 gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L   S  ++       +  S     + I+   +    E         ++  + L +++
Sbjct: 22  RGLCQQSIAAYRQDISSFLTISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGSQPR 193
           V F +   Q+ +   P +  E PK         T +++        Q  K+      +  
Sbjct: 82  VFFLFLKDQQLLPYPPII--EHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDT 139

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTPI 250
                L  +G+R S+ C   + H+ ++   +  + + T +        +     L     
Sbjct: 140 AILHTLYSTGVRVSELCDLRLGHVSDDCIRVTGKGSKTRLVPLGSRAREAIDAYLCPFRD 199

Query: 251 GKETFFINNDKQKMNATQF----SIWFKAKATKAG----VNKSAHGVRKFSATISADAGA 302
             +    + D   ++        S  ++     A        S H +R   AT   D  A
Sbjct: 200 QYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKA 259

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    G   +   E YT  A           +  +    +
Sbjct: 260 DLRVIQEMLGHARIASTEVYTHVA-----ADSLIEKFLAHHPRN 298


>gi|319744124|gb|EFV96497.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 384

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 117/366 (31%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K ++  G I Y+ +        G  +              A+ +A+        +++ 
Sbjct: 3   VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFVHI 61

Query: 64  PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +   T + L   + ++       + AV +   +      I+   G+    KI+    +
Sbjct: 62  TAQTTYTYQELYQRWYEAYKDTVEATTAVKTADLYR---LHILPVFGEKKISKISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F++A+   Y+  NP   V  PK K       WT +++
Sbjct: 119 TFITDKAKTFKNMKQIKSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVDEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221
             F +   E    +    F L  YSGLR  +      +                 +  + 
Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
               T+   ++ ++ L D    +L                             +  + + 
Sbjct: 239 IEKGTKNIFSVRSIYLDDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYYNRDGEV 298

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +   K    K  + K S HG R   AT+  + G          G  +     
Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           +TY+  
Sbjct: 359 DTYSHT 364


>gi|319401403|gb|EFV89613.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 374

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/371 (11%), Positives = 100/371 (26%), Gaps = 45/371 (12%)

Query: 16  TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R  K  +        G +  +      T   A  +A+   +   +     +    TL  
Sbjct: 6   KRGNKWRFKVHFKDHNGDKKYITKSGYRTKTEAKKAAIEIESKLNKGYKEEKS--YTLTS 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
            +  Y  +     ++ +S    +    +I+    D + + IT    +S +       ++ 
Sbjct: 64  WLEYYLNTWRKNKISDSSFEIEQFSKKRILDFYNDINIKDITPSMHQSFINHLIEKGYSK 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFK-SFW 186
           S+  +    ++   + A     +  NPC  +    +     +  +   K+ ++ F     
Sbjct: 124 STLSKTHNLLKRSLERAKYDRLIYFNPCEGITLNHKDLKIKDKAKYLPKDKVKPFLAMVK 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTII 233
                    F  L+ +G+R  ++     +                         K     
Sbjct: 184 KRDVYQYFLFRTLIETGMRIGEASALCWKDYDRKLKTISITKSYNQKRNKFGPTKNKENR 243

Query: 234 TVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            + + +     L                      +  F N   + +  +           
Sbjct: 244 IIFISNELANELFKLKTLQNGNKIANSDFYNNSYDYIFCNEFGEPLPRSTTHNTMMYVTK 303

Query: 279 KA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           K    G   S H +R   AT+  ++      +    G K+     E Y+      ++   
Sbjct: 304 KLLGKGNELSIHKLRHTHATLLLESNVPMKVIQERLGHKSEAITSEVYSHVT--KKMNDN 361

Query: 335 NSRRISSVVDS 345
                   + +
Sbjct: 362 AKENFEKYIKN 372


>gi|255067353|ref|ZP_05319208.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sicca ATCC 29256]
 gi|255048323|gb|EET43787.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria sicca ATCC 29256]
          Length = 352

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 97/315 (30%), Gaps = 13/315 (4%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+G      R   GRRIR           A       +    ++ +   K     +    
Sbjct: 6   RNGVYYVDIRTESGRRIR-QSVGTKNKKEAQKLHDKLTYELWQHEHFDEKPKRLWEEAAV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            + K          S         +++ K        ++   I   V+    + S+  ++
Sbjct: 65  RWIKEKSDKK----SIKDDICRL-RMLPKLRGVYLHHLSRDFIMDVVDRLPCSNSTKNRY 119

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +  +R +   A  +            + K++ E    W K +  +           R   
Sbjct: 120 IALIRSILYKAQNEWGWIDKV--PKLKLKKEAEKRIRWLKPEEAEQLINALPDDHWRAIA 177

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGK 252
           +F   +GLR  +      + +  N  +             I V L D  +++L+      
Sbjct: 178 KFSFCTGLRQRNVFGLRWEQVDLNRKTAWIYPDEAKAGRPIGVPLNDVAIRVLSERMGIH 237

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
           +T+   N + K      S  +K    +AG+ N   H +R   A+     G     L    
Sbjct: 238 KTYVFTNRENKPITALSSRMWKRTLERAGISNFRWHDIRHTWASWLVQRGVPLVALKEMG 297

Query: 312 GWKTVDQAETYTKGA 326
           GW+ +D    Y   A
Sbjct: 298 GWERLDMVMRYAHLA 312


>gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1]
 gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 328

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 20/266 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKITTKHIRSGVES 125
             +  +  +      +  + I + +   Q++          G  D R     ++      
Sbjct: 52  DYLEIFLSAKKIEGCSEKTLIYYRNTIQQMLDSVEKSVCSIGTEDLRD----YLADYQAE 107

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K +  +           F W   ++Y+  +P   + R K  +     +T E ++  +  
Sbjct: 108 KKSSKITIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTDEQLETMRDN 167

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKL 244
                +     + L  +G+R  +      + +  +    I   K      V         
Sbjct: 168 CG-NLRDLALIDILASTGMRVGELVLLNKEDISFDERECIVFGKGDKERMVYFDARTKIH 226

Query: 245 LAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
           L      +                +M      +  +    +  ++K   H  R+  AT++
Sbjct: 227 LQNYLNSRVDTNNALFVSLKAPYDRMKIGGIEVRLRELGKRLNIDKVHPHKFRRTLATVA 286

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
            D G    +L    G + +D    Y 
Sbjct: 287 IDKGMPIEQLQKLLGHQRIDTTLQYA 312


>gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 324

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 88/305 (28%), Gaps = 45/305 (14%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVE 124
             +++  I E         L+ N+ I  E             D     +I   HI+  + 
Sbjct: 2   EISIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLV 61

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            R    ++ ++    L  +R LF + + +EY+             K + +   T  D + 
Sbjct: 62  DRLECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEI 121

Query: 182 FKSFWS-----------------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            +                              +  L    L  +G+R +++    ++++ 
Sbjct: 122 KRMLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENIN 181

Query: 219 NNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETF---------------FINNDKQ 262
           ++   IK  K      V      + + L      +  F               F      
Sbjct: 182 DSQIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDY 241

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++   +     KA   +  +  S H  R + A          + +    G  ++   E Y
Sbjct: 242 RLAEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301

Query: 323 TKGAD 327
            +  +
Sbjct: 302 LRSLN 306


>gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus]
          Length = 391

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/381 (12%), Positives = 104/381 (27%), Gaps = 57/381 (14%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
                Y    G     G+   +          A   A       R   +      +T K 
Sbjct: 9   KNNWRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRN-GDYIAPSSSTFKQ 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           +  ++ K      + V+S  + +      I +      + I     +  V+    +++ +
Sbjct: 68  VADDWLKQY-ANDVKVSSVRARKKAIQHAIERFNTKPIQTIKKHDYQRFVDDMSAQYSKN 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + S  ++FK+A     +   P   ++RPK+K         E  ++F         
Sbjct: 127 YVDSIVASTNMIFKYAYDMRLIKAMPSDGIKRPKKKVSVEELEDIEIHKKFLEKDELFQF 186

Query: 192 PRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSI--------------- 224
             +A                 Y+G+R  +        +     +I               
Sbjct: 187 LEVAKYHHSPQNSFEIFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKH 246

Query: 225 ----------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                  ++                +     F + +   +   +
Sbjct: 247 YQILTPKTESSIGKISVDPHVIQLLKDYKIYVQDTWKNELYVDNNFVFTDLNGYPLVIKK 306

Query: 269 FSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            S W +A   K  +   + S H  R     +  +AG    E+      K ++     Y K
Sbjct: 307 LSTWIQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAK 366

Query: 325 GADRIRLGIKNSRRISSVVDS 345
             +  +     S++ S ++++
Sbjct: 367 ITNSYK--KDASQKFSQLMEN 385


>gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC]
 gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC]
          Length = 298

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 79/263 (30%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L  NS  ++       ++ +      +I+   +   V+         S+  + L +++
Sbjct: 22  RGLCRNSISAYCQDITLFLKINAITSTEEISQDSVYLFVQQLHKRKEAESTLARRLIALK 81

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRL 194
           V F++    + +   P +  E PK         T +++    S            ++   
Sbjct: 82  VFFRFLKEAKLLDHPPLI--EHPKIWKRLPSVLTPKEVDALLSAAQQSKTSPIISARDTA 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIG 251
               L  +G+R S+ C   +  + ++   +  + + T +          +   L      
Sbjct: 140 ILLTLYSTGIRVSELCDLCISDVSDDFLRVTGKGSKTRLVPLGKVACKAIDAYLCPFRET 199

Query: 252 KETFFINNDKQKMNATQFS----IWFKAKATKAG----VNKSAHGVRKFSATISADAGAT 303
            +          ++           ++     A        S H +R   AT   D  A 
Sbjct: 200 FQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKAD 259

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G   +   E YT  A
Sbjct: 260 LRIIQEMLGHARIASTEIYTHVA 282


>gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus
           pneumoniae GA41301]
          Length = 298

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 88/283 (31%), Gaps = 41/283 (14%)

Query: 74  LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRK 127
           LIS Y         L+ ++  ++++   Q    + D+D       K+T  +I        
Sbjct: 5   LISTYLDYCKTHKRLSSHTIRAYKNDLMQF--YNSDYDNVESYIEKLTRSNI-------- 54

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--- 183
              ++  + +  M+V + +   Q  +  NP   +    + +    +    + ++      
Sbjct: 55  -KTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFIYL 113

Query: 184 ----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
                            +  L    LL +G+R S+ C   ++ +   N    I  +    
Sbjct: 114 EQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKE 173

Query: 232 IITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            I          LL               F   +  + ++     +  K    +   +++
Sbjct: 174 RILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRT 233

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H  R   AT+  D+      +    G  ++   + YT  +
Sbjct: 234 ITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276


>gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 83/263 (31%), Gaps = 14/263 (5%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
             +  +  + H    +  S   +++  + + +K  +   + ITT  +R  +++ +   + 
Sbjct: 53  EYLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-EKSIKHITTNDLREYLDNYQKEGNA 111

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +           F W   ++Y+  +P   + + K  T     ++ E M+  +     
Sbjct: 112 SKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRD-NCR 170

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +  ++ +                  V         L  
Sbjct: 171 SLRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHN 230

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++              +++  +   I  +    K  +     H  R+  AT + D 
Sbjct: 231 YLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDK 290

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G + +D    Y 
Sbjct: 291 GMPIEQVQQLLGHQKIDTTLQYA 313


>gi|166032260|ref|ZP_02235089.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC
           27755]
 gi|166027983|gb|EDR46740.1| hypothetical protein DORFOR_01963 [Dorea formicigenerans ATCC
           27755]
          Length = 364

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 98/339 (28%), Gaps = 32/339 (9%)

Query: 15  RTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             ++ K  ++  R  +                    AL      +   N       + + 
Sbjct: 3   VIKNNKTGMWEVRTYYKDLTGARKQKTKRGFAKKSEALEWERNFKLKENQSIS--MSFQS 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK----- 127
            +  Y        +  N+ ++ +   + +I+   G      I T  +             
Sbjct: 61  FVDIYLTDLEPR-IKRNTFLTKKHIIETKILPYFGKRKLDDIRTSDVIQWQNEIMKLKKD 119

Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQF 182
                +P+        +  +   AV    +  N         ++    +  WT+E+ Q F
Sbjct: 120 NGELFSPTYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQEEFQAF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
               ++      AFE L ++GLR  +              +++  K+             
Sbjct: 180 LECVADKPISYYAFEMLYWTGLREGELLALTPADFNFEKKTLRINKSYQRLEGKDVITDP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+ +PD     +           +++    ++ +         A  AGV +  
Sbjct: 240 KTPKSNRTIVMPDFLTIEMEDFIKSIYGIKMDDRIFTISKSYLHHEMDRGAKLAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            HG+R    ++  + G +A  +    G + VD    Y  
Sbjct: 300 IHGLRHSHISLLLNLGFSALAIGERVGHEAVDITYHYAH 338


>gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
 gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01]
          Length = 411

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 98/345 (28%), Gaps = 34/345 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGS 86
           G    + LP             A  G  PK E       +  TL       +  S     
Sbjct: 70  GQWPDMDLPTVRNKARKLKVQIA-DGIDPKLERDKQVETQVPTLYDFFHDTFIVSKKSKG 128

Query: 87  LAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQ 135
                + ++     +    +        KIT  H+                K+  ++  +
Sbjct: 129 -----KKTWRDDIARFEHWKHLHTKPIDKITGVHLHQVQAKLLATEYRPGKKYAAATVDR 183

Query: 136 FLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +  M+ + K A R     Y+     L      R        T   ++  + ++   +  
Sbjct: 184 TIALMKTVLKEAYRLLDIPYIGDKVSLINPDNMRTRYLTMEETAAVIRTSRDYYCRVTGN 243

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            +A      +G R S+      + +        +   K   + T+          + L  
Sbjct: 244 FIALL--FLTGCRDSELRTRKWKDISLIDKTMFVPDTKNGSSMTVPLTPFMVELFRELLN 301

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGAT 303
                  +     K++ + +Q    F     +AG+        H  R   AT   + G  
Sbjct: 302 MRQKGNPYVFFGRKERSHISQPRNAFARIKERAGIKNPHEVCFHVARHSFATNLIENGVD 361

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              +      K +   + Y K + +  L   +S  +SSV+    P
Sbjct: 362 VLTVQRLMNHKDLSSTQKYVKHSQQKLL--NSSDTLSSVLKEQAP 404


>gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
 gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05]
          Length = 270

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 84/236 (35%), Gaps = 17/236 (7%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
           G    R+   +     +  RK   SS ++ ++S+   + +  R++ VAI+P   +   + 
Sbjct: 16  GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRG 75

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           + +  + + + +++Q             +    FE    +G+R S+     +  L  ++ 
Sbjct: 76  EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135

Query: 223 SI-KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSI 271
           +I    K      V   D   K L                ++  F+NN    + +     
Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +    +AG+      H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251


>gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
 gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM
           16841]
          Length = 328

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 78/262 (29%), Gaps = 12/262 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
             +  +  +      +  + I +++   Q++   G      +T     ++      ++ +
Sbjct: 52  DYLEVFLSAKRIEGCSEKTLIYYKNTIQQMLDSIGKSVCTIVTEDLRTYLAEYQREKQSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + R K  +     +T E ++  +    + 
Sbjct: 112 KVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRD-NCDN 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +        +  +    I   K      V         L   
Sbjct: 171 PRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNY 230

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +                +M      +  +    K  + K   H  R+  AT++ D G
Sbjct: 231 LDSRLDGNEALFVSLKAPYNRMKIGGIELRLREIGKKLNIEKVHPHKFRRTLATVAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 291 MPIEQLQKLLGHQRIDTTLQYA 312


>gi|108805035|ref|YP_644972.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
 gi|108766278|gb|ABG05160.1| phage integrase [Rubrobacter xylanophilus DSM 9941]
          Length = 378

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 97/342 (28%), Gaps = 40/342 (11%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           + Y      G + +  Y             L  +   R        K  T+   +  + K
Sbjct: 23  VRYTVETPSGTKRKTAYGKTR---AEVRDKLAKAMSDRADGLLYDDKNMTVGEYLDRWLK 79

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136
            +  GS+  ++   +E      +    G    RK+T  H+ +  + R    + P+S  + 
Sbjct: 80  GSVRGSVRQSTFDRYEIAVRVHLKPALGRHKLRKLTPAHVAALYQDRLDAGYAPASVNKL 139

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             ++      AVR   V  N    V+ P+               +     + G +    +
Sbjct: 140 HVTLHKALDQAVRWHMVPRNVAEVVKAPRPTAREEMRTLSAGETRRLLEAARGDRLEALY 199

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------IITVELPDG 240
              + +G+R  +      Q +     ++  ++T T                  T+ L   
Sbjct: 200 VLAVTTGMRQGELLALKWQDVDLENATVSVRRTITKSGGRLLLGEPKTSKGRRTIHLTGP 259

Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------------NATQFSIW-FKAKATKAGVNK- 284
            ++ L      +     +                    N +      F     KA + + 
Sbjct: 260 AVQALREHLSRQMQEIQHLGDLYRDEGFIFTSESGTLINPSNLRQRSFTPLLKKARLPQI 319

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
             H +R   AT+          +    G   +    +TY+  
Sbjct: 320 RFHDLRHTCATLLLSRNVHPKYVQELLGHSNIAITLDTYSHV 361


>gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51]
 gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 327

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 85/310 (27%), Gaps = 50/310 (16%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------------YRKITTKHIRSGV 123
           Y       + + +++ ++       ++   D+                ++I    + + +
Sbjct: 16  YINHLGVINRSPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAYL 75

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174
                 RK+   +  +   +++  +++ +R++ +  +  + +    +  +  +       
Sbjct: 76  NWARTQRKNGVRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQI 135

Query: 175 ----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                     T     Q K       +    F   + +GLR S+     +Q +  N    
Sbjct: 136 ADLVDIIETGTGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCF 195

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---------QKMNATQFSIWFK 274
              +K      +         +      +   ++              +M+        K
Sbjct: 196 AVIRKGNKETNIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIK 255

Query: 275 AKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD- 327
                           SAH +R   AT+          +    G         Y K  D 
Sbjct: 256 KYMAILQNFGHNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDE 315

Query: 328 RIRLGIKNSR 337
           ++R    + +
Sbjct: 316 QLRRAADHIK 325


>gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113]
 gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113]
          Length = 310

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKI---TTKHIRSGVESRKHT 129
           ++    H+    +  +  ++ S      + + ++G    +     T K +   +  R   
Sbjct: 14  DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLEEAGKDWCQATHADTEKFVAWQMRERGAK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180
                +  + +   +KWA++   V  +P    ++PKR         KE+ Q         
Sbjct: 74  AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQRI 133

Query: 181 ----------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
                       +   +   +  + F  +L SGLR S++    V+ ++      K     
Sbjct: 134 DNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRII 193

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ++    +       F   L         F      +         + +    +AG+
Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAGI 253

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +K  + H +R   AT   ++GA   ++ A  G   +   + YT      R+ 
Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304


>gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
 gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 90/309 (29%), Gaps = 57/309 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
              L+ E+ K+      +  +  S+ ++ ++ +  +   +         +   V      
Sbjct: 108 FDGLLVEFEKAMRLQQKSYRTIQSYVTWVERYLAHAKTHYKESDYVRDFLSHLVMRYNVA 167

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++ + FK+ ++ +   ++  L  ++           T +++++  S  +  
Sbjct: 168 ASTQNQALCALVLFFKYILKCDLGDVSGSLRSKK---DVRLPVVLTVDEVREILSAST-- 222

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV------------------------------QHLQN 219
            + +L  + +   GLR S+  R  +                              + +  
Sbjct: 223 GKEQLMMKLIYGGGLRKSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKEQIDC 282

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------------- 260
           ++  ++        +          L          +                       
Sbjct: 283 HLNEVRKLFEIDRESEVAGVFLPNALIKKYPNAGRKWAWFWLFPSEKLSIDPMTSQKTIR 342

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   +    S + KA     G+ K  + H +R   AT   + G     +    G + +  
Sbjct: 343 RHHNSGQMLSRFLKATCEDLGIKKQCTVHTLRHSFATHLLERGTDLRTIQELLGHEDIST 402

Query: 319 AETYTKGAD 327
            + YT    
Sbjct: 403 TQIYTHVLS 411


>gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 407

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 88/343 (25%), Gaps = 32/343 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKS 81
           Y   K      R              +       +        + +          Y  S
Sbjct: 74  YLIDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINS 133

Query: 82  AHWGSLAVNSRISFES---YFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT- 129
                    ++         F +      +             IT + +   V   +   
Sbjct: 134 Y--------TKKDIRMVQIAFSRFKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRS 185

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
               A       + + ++A+  + +  +PC SV          +     +  Q       
Sbjct: 186 VGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLMACHY 245

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244
             E    R AF F LY GLR  D      +++      +K +++ T          + L 
Sbjct: 246 DNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLN 305

Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L                            K    +AG++K  S H  R   A    + 
Sbjct: 306 DGLLSIIGEAPADKNCLIFDLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNN 365

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 366 GANIKTVASLLGHNGLKHTEKYTRAVD--KLKEEAINSLPELK 406


>gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 410

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 29/288 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSG 122
            +L+ L   Y       S++ ++   ++    Y  + +R      DF    +    I+  
Sbjct: 108 RSLQELFE-YHNEISRHSISAHTLRHYKVTQGYLQKFLRAKFNLEDFRLIYLNFSFIKDF 166

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                        RK   ++A++ L  +R +   A   E++  +P +  +      +   
Sbjct: 167 EFFIKSYQPTDHQRKMGHNTAMKHLQRLRKMVTMAYHHEWIPKDPFVRFKS-SYVKKRRE 225

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             T+E++Q  + F S  ++  +    F F  Y+GL   D  +  + ++  +    +  +T
Sbjct: 226 FLTREELQSIEDFQSSINRLNIVKDIFLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIET 285

Query: 230 GTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   + + L +    +L       +T        + +  + + + K  A   G+ K
Sbjct: 286 ERQKTKTALKIPLLNQARDILKRYQDHPKTVHSKTLLPRYSNQKLNSYLKEIADFCGIKK 345

Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + H  R   AT      G     +    G   +   + Y +  D+ 
Sbjct: 346 HLTFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKK 393


>gi|254295225|ref|YP_003061248.1| integrase family protein [Hirschia baltica ATCC 49814]
 gi|254043756|gb|ACT60551.1| integrase family protein [Hirschia baltica ATCC 49814]
          Length = 402

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 106/362 (29%), Gaps = 40/362 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKREYINSP 64
                GK++++ R+                L  P   +   +  + L     +       
Sbjct: 33  RVQPSGKVVFFVRQSRFTETGTTLDITIGALGQPWTPSNARSQATLLLLQLKQGIDPRKK 92

Query: 65  RKK-PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
             +   T+      +    +       +    ES F   I    G    +++ T HI + 
Sbjct: 93  TNEINYTIASYFEVFCGQTNGRK-KPRTIKLEESLFKRHISPHLGKVKLKELNTTHISNF 151

Query: 123 VES---------RKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +            K  P           +A +    +  +   AV+   +  NP  +V +
Sbjct: 152 MSKVANPDKIIVEKTKPRGKAVVSGGKPTANRAHDILSAMLNHAVKAGLLDKNPAKNVAK 211

Query: 164 PKRKTEGI---RPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ 218
            + + +         +   Q+ +   S+G+           +++G R S+      +++ 
Sbjct: 212 FRTEKKERFLTEVEIQRLGQELRQAGSDGTNTYAIEALKVLMFTGARKSEILSLRWEYID 271

Query: 219 NNIFSIKTQKTGTIITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAK 276
                     +   +   + P   + +L   P      ++          T     +   
Sbjct: 272 WQRSLANLPDSKNDMKSIVLPSVVISILNNLPNKGTNGWVFPSNDGNTHFTGLQKIWNRI 331

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
            T A + +   H +R   A++ A  G + + L            + Y   AD  +R  ++
Sbjct: 332 RTNANLRDVRIHDLRHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLADDPLRHAVE 391

Query: 335 NS 336
             
Sbjct: 392 AI 393


>gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 279

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 89/266 (33%), Gaps = 17/266 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L     +       +  ++ S+      + +         ++   +R           +
Sbjct: 3   DLRRRMMEDLQLAGYSARTQKSYLDAVRGLAKYYMRSP-DLLSEDDVRGFFLHLLKVRKA 61

Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A      +L+ ++  F+  +++++        + +P +        ++++++       +
Sbjct: 62  ARSTFTIYLSGIKFFFETTLQRKW----SVFGITKPAKSKRLPVVLSRKEVRTLLKSI-K 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
             + ++A   +   GLR S+  R  V+ + +      ++  K      V LP   ++LL 
Sbjct: 117 NPRVKMALTIIYACGLRLSEGARLKVKDIDSGRKLLWVRDGKGMKDRCVPLPKRPLELLQ 176

Query: 247 MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                      +   +    +N       F+    K+ + K+A  H +R   AT   + G
Sbjct: 177 THYRLFGAGSEYLFPSGDGHINICTIQTAFRVAVRKSDIGKTATVHTLRHSYATHLLENG 236

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
             +  L    G  ++     Y    +
Sbjct: 237 EDSATLKEILGHSSITTTNIYLHMTE 262


>gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 414

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 97/378 (25%), Gaps = 53/378 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   R R G+   Y   G    +      +         A        +      ++  
Sbjct: 42  FLVAYRLRDGRKNRYV-IGRTPPLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKP 100

Query: 70  TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           TL+  I E+    +      A  +       F     +  D     +T          R 
Sbjct: 101 TLEAFIDEHYAPWALAHLGTAEKTLARMRVAFK----EHLDKRLDSLTAWQFDKWKSERL 156

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------- 174
                P+S  + L S+R     AV  E +  +P   V++ K   +    +          
Sbjct: 157 KSGLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLR 216

Query: 175 ----------TKEDMQQFKSFWSEG-------------SQPRLAFEFLLYSGLRCSDSCR 211
                         ++  +     G                R      + +GLR  +  +
Sbjct: 217 EVLDAREANARAARVRHNEWRMQRGHEARPLIAEGEFIDHIRPMILVTINTGLRRGELFK 276

Query: 212 AGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +      +K +    K+G    V L +    +LA                  +  
Sbjct: 277 LKRSDIDMEKRMLKVRAAAAKSGKSRFVPLNEEAAAMLARWMDQHPGEDEELVFPGKDGA 336

Query: 268 QFSI---WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +     + +      + +   H +R   A+    AG   + +    G   +     Y 
Sbjct: 337 PLTNVDSAWGSIVKAVKLQDFHWHDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYA 396

Query: 324 KGADRIRLGIKNSRRISS 341
             A   +   +   ++  
Sbjct: 397 HLAPEHK--AQAVAKLVR 412


>gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
 gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 328

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 12/262 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
             +  +  +      +  + I +++   Q++   G      +T     ++    + ++ +
Sbjct: 52  DYLEVFLSAKRIEGCSEKTLIYYKNTIQQMLDSIGKSVCTIVTEDLRTYLAEYQKEKQSS 111

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + R K  +     +T E ++  +    + 
Sbjct: 112 KVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLESMRD-NCDN 170

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +        +  +    I   K      V         L   
Sbjct: 171 PRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDKERMVYFDARTKIHLQNY 230

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301
              +                +M      +  +    +  + K   H  R+  AT++ D G
Sbjct: 231 LDSRTDNNEALFVSLKAPYNRMKIGGIELRLREMGKRLNIEKVHPHKFRRTLATVAIDKG 290

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L    G + +D    Y 
Sbjct: 291 MPIEQLQKLLGHQRIDTTLQYA 312


>gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1]
 gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1]
          Length = 311

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP- 130
              Y +       + ++  ++ S  + ++  +   G  + R++    +R  + ++     
Sbjct: 20  FRRYLEGECAR--SAHTVRAYLSDVESLLGFAVQEGVQELRQLELGSLRRWLGAQSEAGM 77

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
             ++  +   + R    WA+R+E +  +P + ++ PKR         ++ + +       
Sbjct: 78  ARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVSRMVDDLNT 137

Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + R   E L  +G+R  +     +  L  +  +++   K     TV    
Sbjct: 138 AAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNKERTVPFGV 197

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVN--KSAH 287
                +           +                ++  Q            G       H
Sbjct: 198 PAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALGDTSATGPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            +R  +AT   D GA    +    G  ++   + YT    DR+R   + + 
Sbjct: 258 ALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAH 308


>gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 341

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 90/339 (26%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y     G+R+R           A+ +       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126
             +I ++       SL   +    +    +   I    GD    ++T        E+R  
Sbjct: 62  SEVIEQW------HSLYGQTLADPKRLLAKLSIICNGLGDPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                          P +      ++  +F    +  +      L+     +  EG   +
Sbjct: 116 GEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLAGLPTFKIAEGELAF 175

Query: 175 TKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              +  +        SQ     +  +  L +G R S++       L     +    K   
Sbjct: 176 LAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +       L        T                  F+    +AG+        H
Sbjct: 236 NRTVPISQELYDELPKNRGKLFTPC-------------RKSFERAVKRAGIELPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118]
          Length = 383

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 108/366 (29%), Gaps = 48/366 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +  T  G+  Y F    G+          +         AL      +  +      P
Sbjct: 5   IKEYTTPSGEKRYKFLIYVGKDETTGRTIQIKKQGFKTEKQALECYLNYKLKVVKGEYVP 64

Query: 69  TT-----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
            T     L  L   + K     ++  ++ +S E  F + I+++ G     K+T    +  
Sbjct: 65  VTKRKLRLNDLYKMWVKLYK-KTVQESTFVSTEKIFENHILKQLGSTYLNKLTVSQCQRA 123

Query: 123 VESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--- 178
           V +     P +  +F+     L  + +  E +  NP   V  PK + +  +         
Sbjct: 124 VNTWADVAPKTFKRFVFYASKLINYGITMELMKKNPMKKVILPKIERDNKKFDNFYSKDE 183

Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------- 224
                        +  + F  L YSG+R  +        +     +I             
Sbjct: 184 LNTFLNDAKGYNFRYFMFFRLLAYSGMRKGECLALKWSDIDFKNNTIDINKSLASGENNR 243

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269
                 + + ++ T+++    M  L      ++   +      ++               
Sbjct: 244 LYLSPCKTSSSVRTLDMDTETMHYLKEWRTKQQKEMLKLGLNFLSNDNLVFANSEGNYTV 303

Query: 270 ----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
                 W  A   K G+     HG R   A++  DAG +  ++    G   +      YT
Sbjct: 304 LSKPQRWDNAICKKFGLRHIKVHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYT 363

Query: 324 KGADRI 329
               + 
Sbjct: 364 HVTKKK 369


>gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4]
 gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein
 gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125
           + ++ E+ +       L+ N+  S+    +Q +    +        +K T  +    ++ 
Sbjct: 3   ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQ 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L+S++  + +   ++ +  +P   +  PK + +     T E +    SF
Sbjct: 63  QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSF 122

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +G + +   E +  SGL+ S+     ++ +      I  +       + +    
Sbjct: 123 DFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRSG-KERVIPIGSYA 181

Query: 242 MKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKF 292
           +  L                   N   +++         K  A K   G+  + + +RK 
Sbjct: 182 VAALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILRKS 241

Query: 293 SATISADAGATAHELMATYG 312
            A      GA    +    G
Sbjct: 242 FAQHMLQNGADLKTVQEMLG 261


>gi|326406553|gb|ADZ63624.1| phage integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 374

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               E+ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKEWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRVLNKFAETHAK 121

Query: 133 AI------QFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A       +   S++ L +    ++++            K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQQLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
               S         +   +G+R S++       +  +   IK  +T              
Sbjct: 182 NRLNSNYSSPTMLFIISITGMRASEAFGLVWDDINFDNNVIKCHRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +       
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|297620912|ref|YP_003709049.1| putative integrase [Waddlia chondrophila WSU 86-1044]
 gi|297376213|gb|ADI38043.1| putative integrase [Waddlia chondrophila WSU 86-1044]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 107/352 (30%), Gaps = 32/352 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           TR        R      I             +      +    +   +   +  TL  LI
Sbjct: 18  TRGSYYRVQIRLKGCPHIS-KNFDSFQKAKDWKRKTIAAIQSGQPYETTEMRRLTLSDLI 76

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             +  S         +      +      + G     ++    I    +  K  P     
Sbjct: 77  DRFISSDLLKLRNHKTIKG---HLSWWKDEIGYCILSQLREDIIAQARDKLKEQPDKWGR 133

Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               ++  ++L S+  +   AVR+  +    P  +V +        R  +KE+ +Q    
Sbjct: 134 SRSSATVNRYLCSLGSVINLAVREWRLLPYSPLKNVRKLPEPRGRERFLSKEEKKQLLLA 193

Query: 186 WSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241
               S           L +G+R  +      +H+     S+     K      V +PD  
Sbjct: 194 CQNSSCKLLYPIVLLALSTGMRKGEILNLKWKHVDLTNGSVTLEHTKNNDRRVVPVPDIS 253

Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           + +L         F      ++ + K+  N   F   +KA   +A + +   H +R    
Sbjct: 254 LNILKSLRAHCAHFGELTDEYVFSQKKGHNPIDFRASWKAALKQAKIKDFKFHDLRHDFI 313

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
           T  ++     H +    G ++       Y+       LG+ +++  S+ + S
Sbjct: 314 TTLSELKYPLHVISKIVGHRSHTITATRYSH------LGLDHAKEASADIGS 359


>gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2]
 gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2]
          Length = 383

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 99/345 (28%), Gaps = 45/345 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+ I+       T   A   AL+    K +  +         + +   + +     ++ 
Sbjct: 28  TGKEIKTNRSGFKT-RQAANLALSRLLLKSKSADFIFDSNLHFEKVAEMWLEQYK-NTVK 85

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
            ++  + +      II   G     KIT  + ++ V             +     +F++A
Sbjct: 86  ASTLTAQKFVLKKHIIPHFGKIPINKITIPYCQAKVNHWFSYYKKFNNLIMITSQIFQYA 145

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGSQPRLAFEFL 199
           +    +  NP   V RPKR+ +  +          K                  L F  L
Sbjct: 146 ISVRLLTNNPMNGVIRPKRQMDIDQEDYAAPYYSQKQLITFLDKAKKQLPFSEFLMFRIL 205

Query: 200 LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFM 242
            ++GLR  +      + +                    +     +   ++  + L D  +
Sbjct: 206 AFTGLRKGELHALRWKDISFGRGTLSVKQTVATADGWKLIFQTPKTRKSVRELSLDDETL 265

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF---------------SIWFKAKATKAGVNK-SA 286
           KLL    + ++  F     +  N  Q                +           +   + 
Sbjct: 266 KLLKRWKLQQKELFFKLGIKHDNEEQLLFTSEENKVLYLDFLNHRLTKILKDNNLEYMTV 325

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           HG R    ++  ++G    E+    G   +      Y    D+ R
Sbjct: 326 HGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKR 370


>gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
 gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58]
          Length = 321

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 24/265 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L   + +++       +  +      +I+   +   VE         ++  + L +++
Sbjct: 44  RGLCQQTILAYSQDISLFLLLNKILSTEEISQNSVCYFVEKLHERNEAEATLARRLIALK 103

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPR 193
           V F +    + +   P +  E PK         + ++++Q                 +  
Sbjct: 104 VFFIFLKDAQLLKHPPII--EHPKIWKRLPTVLSPQEVEQLLLTPKRAKHLSPLIVARDT 161

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------TVELPDGFMK 243
                L  +G+R S+ C   +  + +    +  + + T +                 F  
Sbjct: 162 AILYTLYSTGIRVSELCDLEIGDVNDEFIRVTGKGSKTRLVPLGSLARDAIDAYLSPFRD 221

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISADAGA 302
           L+      +E  F++   +K+  +         A +      S H +R   AT   +  A
Sbjct: 222 LMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQITSKPVSPHSLRHAFATHLLNNKA 281

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G   +   E YT  A 
Sbjct: 282 DLRVIQEMLGHSRISSTEIYTHVAS 306


>gi|317506912|ref|ZP_07964684.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
 gi|316254840|gb|EFV14138.1| phage integrase [Segniliparus rugosus ATCC BAA-974]
          Length = 395

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 116/375 (30%), Gaps = 59/375 (15%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-A 82
           Y     G+R R  +  ++    A    L  +  + +    P     ++K  ++ +R +  
Sbjct: 25  YLDPKTGQRKRTSFYADT--AKAAREKLKNARERLDKGAPPTDAKASVKEWMAHWRATTL 82

Query: 83  HWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTP---------- 130
                  N+   +E      I   K G     K+   HI + +   K+            
Sbjct: 83  QASDRKANTIELYERLSIHHIETGKFGTLTLDKLKPSHIEALIVHLKNAGKAQTGDDGKK 142

Query: 131 -------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+     T +R     AVR   +A NP   V+RPK + +    +   D+ +  
Sbjct: 143 NLVGLAESTVRTTYTVLRSALDTAVRDGLLAENPATKVKRPKVERKEAVHFEAADLAKIL 202

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----------------- 226
              ++ S+       +  SG+R  ++       ++      K                  
Sbjct: 203 KA-ADSSRYHTTLLLIAASGIRRGEAAGLRWSDVELKEQDGKFTVRKTAARIGGELVLTD 261

Query: 227 -QKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI 271
            +   +  T+ L  G +  L                        F       ++      
Sbjct: 262 PKTKTSRRTIPLSQGMVTALKAHRKRQLEERLRAGDQWKDNGMVFTTEFGTIVDPRNLLR 321

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             KA A KAG+ K + H VR  +A    ++G     +    G  ++    + Y   +D+ 
Sbjct: 322 VVKAAAKKAGIEKANVHAVRHSAAMAWLESGVHIKAVADLLGHSSIAITGDIYGHTSDQA 381

Query: 330 RLGIKNSRRISSVVD 344
                    +S+V+ 
Sbjct: 382 --ARSAVDGLSAVLG 394


>gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 87/313 (27%), Gaps = 36/313 (11%)

Query: 70  TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHI 119
           +L  L+  +   +      L+ ++  S+   F  ++    +  G               I
Sbjct: 5   SLPALVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKHIGRAPSKLRIEDFDVSLI 64

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              ++  +H    +  +    L ++   F++    E      C  +     K     P  
Sbjct: 65  EEFLQHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLLCQRILAIPSKRCEHGPVE 124

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNI 221
                +              G++ R      + +GLR S+      Q +          +
Sbjct: 125 FLTESEAAALVGAPDVRNWIGNRDRTLLLVAVQTGLRNSELTALRRQDVALGTGAHVRCL 184

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              +  +   +    +      LL       +  F ++    ++A          A  A 
Sbjct: 185 GKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGDPVFPSSRGGHLSADALQQLVSRNAETAR 244

Query: 282 VNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           ++         + H +R  +A      G     +    G ++ +  + Y     +++   
Sbjct: 245 LSCPSLKKKSITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERA 304

Query: 334 KNSRRISSVVDSD 346
                 S V  + 
Sbjct: 305 LAHATASGVAPTR 317


>gi|157737940|ref|YP_001490624.1| phage integrase family site specific recombinase [Arcobacter
           butzleri RM4018]
 gi|157699794|gb|ABV67954.1| site-specific recombinase, phage integrase family [Arcobacter
           butzleri RM4018]
          Length = 386

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 102/381 (26%), Gaps = 63/381 (16%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGH---------GRRIRLPYPHESTFIPAYMS-- 49
           M  + +L   +      +G  ++YF              ++  +     S  I    +  
Sbjct: 1   MNKTKKL--GIYYNELENGDKVFYFTYKDINDLDKNGNPKKKWVNVGKYSEGIREINAVN 58

Query: 50  -------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                   +             +K+   L+ + + Y K          S      + + I
Sbjct: 59  LRNEQINKMKHGEDISIVAKKKKKEFINLENIANLYFKD------KKTSEKQISKFENHI 112

Query: 103 IRKSGDFDYRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRV 142
               G+ +   IT K I    ++                       +P +    +   + 
Sbjct: 113 NPFFGNKNIDSITKKDILDFRQNLIDGTLKYPINIQEKRNLITEAKSPQTVNGIIELFKA 172

Query: 143 LFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           ++   +++  +   NPC  + + K      +  T E++              L  +  L 
Sbjct: 173 IYNHYIKEYNLKIANPCFGISKLKTDNAREKFLTTEEINLLIEQIESNKTLWLFVKLSLS 232

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMTPIGKETF 255
           +G R         + +     +I  +   T  T +              L          
Sbjct: 233 TGGRLETILNIQKKDINLTNSTITLKNLKTDETYKGFLQPDISDFLEDFLQNLKPNYYLI 292

Query: 256 FINNDKQKMNATQFSIWFKAKATKA---GVNKS-------AHGVRKFSATISADAGATAH 305
              N  +K N+ Q     K    K     ++          H +R   A+  A  G    
Sbjct: 293 SFENHIEKTNSRQIQTRLKPILDKLFNKDLDARDTKNRFVIHSLRHTFASHLAINGTPIF 352

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +      K ++Q   Y K A
Sbjct: 353 TIKELMNHKDIEQTMRYAKLA 373


>gi|71275345|ref|ZP_00651631.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71901026|ref|ZP_00683137.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71163645|gb|EAO13361.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71729212|gb|EAO31332.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 339

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 101/329 (30%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++         +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +   A + ++    L+ W   +     +        +R     R    +D      + 
Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  +       + T     F    T AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDRARTAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 399

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 118/383 (30%), Gaps = 62/383 (16%)

Query: 12  TKERTRHGKIIYYFRKG--HGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           TK + ++G+    F      G + R+            ++S +       + +    +  
Sbjct: 11  TKFKLKNGQWRAAFFVPLHDGSKKRIYRQFRTRKEADEWLSKIKSEISAGKPVLCSDQP- 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRK 127
                 + ++ +     ++  ++R+++  Y   I R    D   + +T   ++  +   K
Sbjct: 70  --FGEYLDQWLEKFGSVAIRNSTRMNYLGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLK 127

Query: 128 H----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +          +  +    +  +      AV ++ +  N    V+ PK  T  +R  T+ 
Sbjct: 128 NAGQLDTGLPLSAKTLHNIMNMIHKALDHAVGRQLIYHNAADYVQLPKVMTPEMRVLTET 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------- 227
           ++  F     EG + ++A   +L+ GLR  + C      ++                   
Sbjct: 188 EISGF-VAAMEGDRLQIALVLMLFCGLRLGECCALTHDDVRCKDGIYYLNISKSLNRVSN 246

Query: 228 ----------------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264
                                 K    +  E+ D  +  +       E  +   ++    
Sbjct: 247 FEAKAGEPKTILRLQETKTSKGKRQVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWL 306

Query: 265 ---------NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    +        KA A   G+ +   H +R   A+ +  AG     L    G +
Sbjct: 307 IANELGHYLDPGTVRKKLKAVAESIGITDFHPHCLRHTYASQAVKAGVPLPYLSDILGHE 366

Query: 315 TVD-QAETYTKGADRIRLGIKNS 336
           +    A+ Y     + R   + +
Sbjct: 367 STAFTAKVYVSLDLQGRANAQAA 389


>gi|255020639|ref|ZP_05292701.1| Integrase [Acidithiobacillus caldus ATCC 51756]
 gi|254969875|gb|EET27375.1| Integrase [Acidithiobacillus caldus ATCC 51756]
          Length = 357

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 104/352 (29%), Gaps = 36/352 (10%)

Query: 13  KERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +   ++ +I +  R +  G   ++          A+  ++     +  + +    + TT+
Sbjct: 7   RYDDQNIRIGWQVRIRKRGFPQQVRTFRTKAEAEAWARSIEAEMDRGVWQDRSEAERTTV 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             L+  Y +          +     S    +    G     ++T+  I S  + R     
Sbjct: 67  GELLDRYAREV-LADKKHCTPE--LSRLKTLDDAFGRVAVARLTSSAIASFRDKRLRDEG 123

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
                 +  +    +  +  + K A R+  +A+        V+ PK      R     + 
Sbjct: 124 RGGKPVSGQTVKHEIGLLHRVLKKAEREWGIALPMGLPTEKVQAPKLPQGRDRRLQGNEE 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA--------GVQHLQNNIFSIKTQKT 229
           ++  +  +    P L         + +R  +            G + +Q      K    
Sbjct: 184 ERLLAACARARNPWLLPLTRFAIETAMRAGEMLETKGTADPETGERPIQTTGLLWKHVDL 243

Query: 230 GTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                                 +A+  +      ++            + F     +AG+
Sbjct: 244 KKRTATLPMTKNGTARVVPLSSVAVEILRGLPRSMDGRVFGTTYEAIHLSFTRACKRAGI 303

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRL 331
            +   H +R  + +   +      ++ A  G KT+   + YT  +  D  RL
Sbjct: 304 EDLRFHDLRHEATSRLFERDLNPMQVAAITGHKTLQMLKRYTHLRAEDLARL 355


>gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium]
          Length = 314

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 72/302 (23%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R        ++ +  ++  +  + I   G    +++    +   +         S
Sbjct: 15  LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  +         + +    +V R KR        T  +++            
Sbjct: 75  ASTQNQALSAVLFLYREVLKIDLPWLDNVIRAKRPQRLPVVLTPVEVRAVLERM--DGVY 132

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL----- 245
            L    L  +G+R  +  R  V+ +      I  +  K G      LP      L     
Sbjct: 133 ALMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLADHLQ 192

Query: 246 -------------------------------AMTPIGKETFFINNDKQKMNATQ------ 268
                                                      +      +         
Sbjct: 193 RRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRHHID 252

Query: 269 ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K   T A + K  + H +R   AT   + G     +    G   V     YT
Sbjct: 253 EKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYT 312

Query: 324 KG 325
             
Sbjct: 313 HV 314


>gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
 gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 12/240 (5%)

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT + +   V   +       A       + + ++A+  + +  +P  SV          
Sbjct: 29  ITKEMMEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPSKSVTCKVDSQMLR 88

Query: 172 RPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +     +  Q  +      E    R AF F LY GL   D      +++      +K ++
Sbjct: 89  KDVLSPEEIQKLAACHYDNENPNVRRAFIFCLYCGLCFCDVKDLTYKNVDYANRLLKFEQ 148

Query: 229 TG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           +       +  +       L                            K    +AG++K 
Sbjct: 149 SKTKGYSASSGVVIPLNDSLLSIIGEAPVDKNCLIFDLPTYESCCKSVKRWVKRAGIDKH 208

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            S H  R   A    + GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 209 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 266


>gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLLTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLRERLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
 gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM
           17393]
          Length = 398

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 18/266 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +++      L  +++ +  S    +     +  +  +T + + S     +          
Sbjct: 115 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 174

Query: 138 TSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             M+ L +       ++            + K    G    + E++++ ++   +G   +
Sbjct: 175 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLSPEELEKLETLQLKGRYTK 234

Query: 194 L-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                 AF F  Y+G+R SD       ++               I           L  +
Sbjct: 235 YQKTLDAFLFCCYAGMRYSDFVNMKPDNIVEMHQET--WLIYKSIKTGTEVRLPLYLLFS 292

Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                   K    + +     + +  +      A  AGV    S H  R  +AT+    G
Sbjct: 293 GKGILILNKYQANLQDFFHLRDNSNVNKELIIIARLAGVAKKVSFHTARHTNATLLIYNG 352

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G K+V   + YT   D
Sbjct: 353 VNITTVQKLLGHKSVKTTQIYTNVMD 378


>gi|29830271|ref|NP_824905.1| integrase [Streptomyces avermitilis MA-4680]
 gi|29607382|dbj|BAC71440.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 379

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 107/375 (28%), Gaps = 36/375 (9%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYI 61
              R   F +  +   G+    +R      +R       T   A ++         R   
Sbjct: 4   KKGRRRSFGSCRQLASGRWQVRYRDPQTGLLRPAEKTYETKTDAQVALTHIEADITRGQW 63

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
             P           + + +      LA  +R   ES     ++   G      +TT  +R
Sbjct: 64  ADPDAGDVNFADYATAWLRD---RKLADRTRERNESVMRLHVVPVFGAGSIADVTTARVR 120

Query: 121 SGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           S             + ++    +R L   AV  E +  NPC                +  
Sbjct: 121 SWRGKLLAAGVGEPTVVKAYQLLRALMNTAVDDELIRRNPCRIKGADSYDVPERPVLSVA 180

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           ++      ++   + RL      ++ LR  +      + +  N   +  ++         
Sbjct: 181 EVFG--VAYAIAPRYRLLVLLAAFTTLRFGELAALRRKDIDLNGRLVVVRRAQAELQNGR 238

Query: 233 ------------ITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFK 274
                        TV  P   +  ++               F+     ++  + F   + 
Sbjct: 239 LFDKAPKSAAGLRTVSFPAELVDEISHHLKHYAADGQEGHLFVGPQGGQLRRSNFRDDWI 298

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
                AGV      H +R    T+++ AGA+  ELM   G  +   A  Y    +DR R 
Sbjct: 299 KARKAAGVSPKLHFHDLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDRT 358

Query: 332 GIKNSRRISSVVDSD 346
                  +    + D
Sbjct: 359 IADRLGAMIRNGEGD 373


>gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 330

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 91/294 (30%), Gaps = 14/294 (4%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             + A +++   +    E  +  +++    + L+S +  +      +  +   + +  ++
Sbjct: 23  ARLKAVLASELHNVEIVEKEDCSKQQAQENEHLLSSFISAKKIEGCSEKTLAYYRNTIER 82

Query: 102 IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           ++          ITT  IR+      E  + +  +           F W   ++Y+A +P
Sbjct: 83  LLLTL-SIAICHITTSDIRAYLSDYQEEHQSSKVTMDNMRRIFSSFFAWLEDEDYIAKSP 141

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              + + K  +      + E ++Q         +     + L  +G+R  +  +   + +
Sbjct: 142 VRRIHKVKTDSLVKEVLSDEQLEQ-LRDSCTNKRDLALIDILSSTGIRVGELVKLNREDI 200

Query: 218 QNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFS 270
             +               V         L      +           +    ++  +   
Sbjct: 201 DFHERQCVVFGKGNKERIVYFNARTKLHLQQYLDERTDDNPALFVSLHLPHTRLTISGVE 260

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  +       + K   H  R+  AT++ D G    ++    G   +D    Y 
Sbjct: 261 VRIRDLGKSLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|149012704|ref|ZP_01833680.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
 gi|147763304|gb|EDK70242.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP19-BS75]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 120/375 (32%), Gaps = 56/375 (14%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + + + KS    ++  +++    S +    Q+I    D     +  + ++  +E    + 
Sbjct: 68  IYNLFYKSWS-QTVKESTKHNCKSIDKIMKQVIPS--DTLLANLDRRFLQEAIEKIIESN 124

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQ- 180
              +A +    +R +F +AV+  Y+  N       P++               T ++++ 
Sbjct: 125 GYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKA 184

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                +      +       L  +G+R  +     ++++      I+             
Sbjct: 185 LVDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKT 244

Query: 233 --------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273
                    T+++ +  ++ +    +               F      Q      F    
Sbjct: 245 LPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQIL 304

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           K    +A + K  S+H  R    +  A++G     +M   G        E Y+   +   
Sbjct: 305 KKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE--- 361

Query: 331 LGIKNSRRISSVVDS 345
                  ++ + +D+
Sbjct: 362 ---DMEDKLVNKLDT 373


>gi|295397035|ref|ZP_06807149.1| phage integrase [Aerococcus viridans ATCC 11563]
 gi|294974726|gb|EFG50439.1| phage integrase [Aerococcus viridans ATCC 11563]
          Length = 371

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/357 (11%), Positives = 92/357 (25%), Gaps = 56/357 (15%)

Query: 14  ERTRH-GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + ++ GK  +  R         R++R  +  +   + A    +   T +          
Sbjct: 4   YKDKNTGKWYFSIRYQDDFGANKRKVRRGFKTKKLALEAEREFMNKETGEI--------- 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES- 125
             T   L   Y        L  ++  +  S  + +I    GD    KI  + IR      
Sbjct: 55  DMTFNSLTEIYLDDMSHR-LRESTMDNKRSIINSKITPLIGDTKLSKINERTIRKWQNQI 113

Query: 126 --------RKHTPSSAIQFLTSMRVLFKWAVRQE-----------YVAINPCLSVERPKR 166
                   +  + +        M  +  +AV+              +             
Sbjct: 114 LSLKDDNGKLFSQTYIKTINNQMSAILNYAVKYYGLESNPIHTIGSIGKKHADEKNYWSL 173

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +         +      ++     Q R AF  L ++G+R  +               +  
Sbjct: 174 EQFNKAMAYYDFRDSQTTYSFPTLQYRFAFHLLFFTGIRVGELLALSANDFDYTNKILTI 233

Query: 227 QKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQF 269
            K+                     + +P   + +L         +  ++           
Sbjct: 234 NKSYQRLRGKDVINRPKTDTSIRDITIPQFILDMLDTYLETLYDYQPDDRIFPNVRKDTL 293

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   +  +    + +   H +R   A++    G     +    G K +     TY+ 
Sbjct: 294 AKQLQMISKHTDLPRIQVHDLRHSHASLLIKQGINFKVIQQRLGHKDIQTTLNTYSH 350


>gi|291484295|dbj|BAI85370.1| hypothetical protein BSNT_02803 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 389

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 91/380 (23%), Gaps = 46/380 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K R R  +    ++     + ++              A      +         + 
Sbjct: 7   GYIPKAR-RQWEYRVSYKDPFTLKYKIKSKSGFKTKKEAQKAAAEQEKQIAAGFEFDTET 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            +L+  +  +       ++  N+    E      I+    +     I     +  +    
Sbjct: 66  MSLEQFLFSWLHEYKKDTVRKNTYELHERNIKNHILPYFKNIKITDIKPIMYQKFLNFLT 125

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV-------AINPCLSVERPKRKTEGIRPWTKEDMQ 180
               S          +F    +   +            +S +  K+K       +++  +
Sbjct: 126 DQGYSKRTVEIIHGTMFNAFSKAVIIGKLAKNPCYGATISNKNEKKKGTLEYMLSEDIPK 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
             +  +       + F  L+ +G+R  ++       +      I                
Sbjct: 186 FLQEAYKYNYIYYIFFRTLIETGMRKGEAAALQWTDINLRENYIDIKNTLDFSAKTAAEL 245

Query: 225 ---KTQKTGTII-------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                      +      ++L                       
Sbjct: 246 FGETKTYESKRRISIGASLSAALQKHKKWQFENKQMLQDDYKHDLNLVFCRVDGNFLPKS 305

Query: 269 -FSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                F     +A +NK   H +R   A +  ++GA    +    G K++      Y+  
Sbjct: 306 TLFNAFNRILKRADINKMPIHALRHTHAVLLLESGADMKYIQERLGHKSMMVTADVYSHI 365

Query: 326 ADRIRLGIKNSRRISSVVDS 345
           +   +L     +     V S
Sbjct: 366 S--KKLDQNRIKDYEKYVSS 383


>gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 310

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 94/292 (32%), Gaps = 37/292 (12%)

Query: 77  EYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITT----KHIRSGVESRKHT 129
           ++    H+    +  +  ++ S      R   +   D+ + T     K +   +  R   
Sbjct: 14  DFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEVGKDWCQATHADTEKFVAWQMRERGAK 73

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180
                +  + +   +KWA++   V  +P    ++PKR         KE+ Q         
Sbjct: 74  AHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQRI 133

Query: 181 ----------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----- 225
                       +   +   +  + F  +L SGLR S++    V+ ++      K     
Sbjct: 134 DNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRII 193

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               ++    +       F   L         F      +         + +    +AG+
Sbjct: 194 GKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAGI 253

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +K  + H +R   AT   ++GA   ++ A  G   +   + YT      R+ 
Sbjct: 254 DKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304


>gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 159

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 12/142 (8%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E +  +G+R S+     +  +      I+  + G    + +       L         
Sbjct: 1   MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRERIIPIGSVARISLRQYLKQARP 60

Query: 255 FF----------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                        N   Q M+   F    K  A KAG+  + + H +R   A    + GA
Sbjct: 61  AMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENGA 120

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               +    G   +   + Y K
Sbjct: 121 DLRSVQEMLGHSDISTTQIYLK 142


>gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 357

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 103/345 (29%), Gaps = 28/345 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + +HGK          +  +  +  +     A  + +         +++      TLK 
Sbjct: 27  YKDKHGKW--------KQTSKSGFARKRDITTAVKNEMLKELSGLLSLDNSMD-SITLKD 77

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
                         A+N+ I++ +  +++     D   ++IT  H      + +    ++
Sbjct: 78  FSELVIADKK-NEYALNTIITYRNAINRL-PTLKDMPIKEITYAHCIKEFATLEQAKGNT 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGS 190
               +T ++  FK A+  + +   P  +            +R +T+E+M     ++    
Sbjct: 136 VFSTVTVLKSFFKQAMLYKVIPSTPLANYSYKPGHKGVSRLRIFTEEEMNTLLDYYKGKD 195

Query: 191 QPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLL 245
                    L Y GLR  +        +Q N+                         + +
Sbjct: 196 LQTWIQLCFLRYCGLRLGEMSAIRWCSIQGNMLTVDRQYSNISGKFAFRKLKTKNSYRTI 255

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADA 300
            +         +   +     +   +  +  A    + K     S H  R   AT     
Sbjct: 256 PIPDTLLNAIQVYKKRYPPFISTARVVQRNIALNISIKKIYPCHSPHDFRHTYATNLLAR 315

Query: 301 GATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVD 344
           G     + +  G  T+   E  Y   ++ +R       +++ +  
Sbjct: 316 GVNLRTVASLLG-DTITTVEKTYIHYSEEMR--KNAVIKLNEIFG 357


>gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407]
 gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407]
          Length = 295

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 83/280 (29%), Gaps = 37/280 (13%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133
           Y         L+ ++  ++++   Q               + + S +E   H+    S+ 
Sbjct: 9   YLDYCKAHKRLSTHTLRAYKNDLMQFYNS---------NNECVISYIEGLTHSNLKTSTL 59

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTK-------------EDM 179
            + + S++V + +   +  +  NP   +    R +    +  +                 
Sbjct: 60  RRKIASLKVFYGYLQLKNVITDNPFNQLRFQFRAEKTLPKTISHDSLKILYTYLQKKMIS 119

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
            +      +  +  L    LL +G+R S+ C   ++ +     +     K      + + 
Sbjct: 120 AKTIYQKQKAERNLLIVSLLLSTGIRISELCHIQIKDINLTEQTLQILGKGKKERMIFIG 179

Query: 239 DGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFK--AKATKAGVNKSAHGV 289
           D     L    I       ++        ++ +      +  K     T+     + H  
Sbjct: 180 DERTFQLLKAYITCYCNHTDDYLFPGKSLQKPLTEQSVRLLLKTAKTQTRLTTTITPHMF 239

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT+  D       +    G  ++   + YT  +   
Sbjct: 240 RHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSR 279


>gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 330

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 93/293 (31%), Gaps = 47/293 (16%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130
           I E+       +L+  + +S+E       +      G  D +K+T K IR  +   K+  
Sbjct: 8   IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67

Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                       ++   ++ +++V F + + Q Y+  +   +++
Sbjct: 68  KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + K + +     T     +             +  L    LL +G+R  +     V+++ 
Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENID 187

Query: 219 NNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQ 268
            N        +  K      V       K L      K+ +  ++               
Sbjct: 188 MNYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           F    K  A +AG+ +   H +R   A     +G + + L    G  +V   E
Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300


>gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953]
 gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
          Length = 340

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 111/338 (32%), Gaps = 39/338 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH--ESTFIPAYMSALTGSTPKREYINSP 64
           +PP V     R GK  Y FR   GR IRL      ++    A+   +             
Sbjct: 13  MPPRV-----RKGKSAYEFRAIDGRTIRLCNFECSQADVWVAFEKLMINQKE-------- 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               +T   LI+E+  S  +  LA  ++  +  Y  +II   G      I  +HIR  ++
Sbjct: 60  ---DSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMD 116

Query: 125 SRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R       A +  + M  +F+W   +  V +NPC  V+   +  E +R     D +   
Sbjct: 117 KRGAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVK---QFKEKVRTRYITDEEYTA 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + +  S  ++A E       R +D        L  +   I+  KTG            +
Sbjct: 174 LYDTAPSVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGVAQIKAWIPRLHE 233

Query: 244 LLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGV 289
           ++           +            +     F+  +      A +         + H +
Sbjct: 234 VIRLASTLPLNRGVVSIYLLHQQSGSRFTRDSFNAHWMKAKKAATMKYPELEFNFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    +       + ++  A  G K   Q   Y +  +
Sbjct: 294 KAKGISDL---TGSLYDKQAISGHKNASQTARYDRKIN 328


>gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629]
          Length = 377

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 98/370 (26%), Gaps = 51/370 (13%)

Query: 14  ERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +   G+     Y       ++ +  Y H    +      LT          +P++   T
Sbjct: 9   RKRADGRWEGRYYIVDTAGSKKCKSVYGHSYKEVTE--RLLTAKAASLNQTIAPKQSAIT 66

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K +  ++ +S    S   ++   + + +   I    G+    ++    I   +      
Sbjct: 67  VKEVAEKWLESI-ASSRKCSTIQKYSTIYNKYIKPNWGESVIDQLNQNEILKEL-PETVG 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            S     L     +  +         + ++                  T +  +  +   
Sbjct: 125 ESVTKSILCIFNSILAYGAATYGTGEIHLSYRAKRSSVTSSNNINTINTTDQQKLTEYLL 184

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
           +E    +L     L+ GLR  + C    + +     ++   +T                 
Sbjct: 185 TELDIYKLGILLCLFMGLRLGEICALKWEDIDMISRTLHVNRTVQRLPVDTIHTSGSSQN 244

Query: 233 ---------------------ITVELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQF 269
                                  + + D     L+                 Q M+   +
Sbjct: 245 NHTATRKTSLYIDSPKTSNSLREIPISDFIYDKLSDYYNTSMKGDSYFLKKNQPMDPRTY 304

Query: 270 SIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GA 326
              F     +AG+  +  H +R   AT    +GA A  +    G   V+     Y     
Sbjct: 305 QNKFHIYIREAGIGNTHFHALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNL 364

Query: 327 DRIRLGIKNS 336
           +  R  I + 
Sbjct: 365 ETKRSAINSI 374


>gi|290475797|ref|YP_003468688.1| putative integrase [Xenorhabdus bovienii SS-2004]
 gi|289175121|emb|CBJ81924.1| putative integrase [Xenorhabdus bovienii SS-2004]
          Length = 326

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 112/336 (33%), Gaps = 35/336 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +PP V +     G+  Y F+   GR IRL          A +   +      E + +  K
Sbjct: 1   MPPRVFR-----GRSAYEFKHPDGRTIRLC---------ALIVDKSVVWNHYEQLVNEEK 46

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L+ ++  SA +  LA +++  +  Y  +++   G  +   I   HIR  ++ R
Sbjct: 47  ATFTYGSLVDDFLHSADFIELAKDTQSDYRKYSKKVVPVFGKMNPNNIRPDHIRKYMDKR 106

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A +  + M  +F+W   +  V  NPC  V++ +  +        E    ++  
Sbjct: 107 GLQSRTQANREKSFMSRVFRWGYERGLVKKNPCQGVKQYRENSRERYITDAEYQALYEVS 166

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               +  ++A E       R  D        L      IK  KTG        +   K +
Sbjct: 167 P---TVIQVAMEIAYLCCARQKDILALSKSQLMEAGIYIKQHKTGKSQIKGWSERLRKAI 223

Query: 246 AMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKA-------GVNKSAHGVRK 291
            +                   + +  +   F+  +      A         N + H ++ 
Sbjct: 224 KLANSLPLKEGLHSLYVIHQANGKIYSRDGFNSRWLKAKEIAAQKYPELRFNFTFHDLKA 283

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +       T  E  A  G K + Q   Y +  +
Sbjct: 284 KGISDL---EGTLQEKQAISGHKDIGQTARYDRKTE 316


>gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
 gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus
           Q1]
          Length = 370

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 111/370 (30%), Gaps = 42/370 (11%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
            K+  +  K  Y    G           +         A    T     +++      + 
Sbjct: 5   VKKDKKTEKYFYIVDIGIDPLTGKRKQKKKRGFITKKEAENALTMVLSEVHTGTYVEPSK 64

Query: 71  --LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
                 +  +  +    S+ + +    + Y   +II   G+    K+T+ H+++ V S +
Sbjct: 65  LIYGEYLESWFNTKR-HSVGIQTAKVLKGYLTSRIIPSLGNIKLAKLTSLHMQNYVNSLR 123

Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +  + +  +R   + A+  E +  N  +  + PK   E +  WT+E++Q F  
Sbjct: 124 DEGLKRGTIEKIIKIIRNSLEHAIDLELITKNVAVKTKLPKGDKEELTVWTEEEVQLFLK 183

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
                S+  + F   L +G+R  +      + +      +   +T +             
Sbjct: 184 AAQ-DSRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTK 242

Query: 233 ---ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                + LP   +  L                     +          +N         A
Sbjct: 243 SSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNA 302

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
              KA V K   H +R   AT+    G     +    G   +    +TY+       +  
Sbjct: 303 LIQKAAVPKIRFHDLRHTHATMLLAKGVNVKVIFERLGHSNIKITLDTYSHVLPT--MQE 360

Query: 334 KNSRRISSVV 343
               +I  ++
Sbjct: 361 DAVNKIEEIL 370


>gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4]
 gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4]
          Length = 315

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 104/306 (33%), Gaps = 17/306 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115
           R+      +  +T + ++ E+         A  +   + ++  +  R+  D   DY ++ 
Sbjct: 2   RKLFRLSERLQSTWQEVLEEFCLHQQAQGKAERTLYDYRAWIGRFFRRHPDAWGDYERLR 61

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--- 172
              +          P++       +++ F W VR+ Y+  NP   +++ +          
Sbjct: 62  RAVLEHFAHLSHKAPATFNMARKYLKLFFAWCVREGYLPANPVDGIKKRREDGTPRPVSL 121

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              ++ +         G +      F L +G+R  ++ +   +H       +      + 
Sbjct: 122 EAVQKLLTACDRKSFTGLRDYALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVSK 181

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAG 281
                   I+ +      +LLA+ P    +       +     Q S W    A    +AG
Sbjct: 182 TRAARTVVISPQTARAVQRLLAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRAG 241

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340
           V  + + +R  +AT     GA+A  +    G   +     Y +  +  +R     +  ++
Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASPVA 301

Query: 341 SVVDSD 346
            +V   
Sbjct: 302 RLVPER 307


>gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 370

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 95/304 (31%), Gaps = 32/304 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR 120
           P   P +L  L+  +       + + ++      +         + G +    IT   + 
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83

Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                            +  +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143

Query: 172 RPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           R       T++ + Q      +G + R   E L  +G+R  +  R  V  +       +I
Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273
           +  K      + L +  +  L           I N   K             A   S   
Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKN 335
            +  
Sbjct: 324 AVHA 327


>gi|260596908|ref|YP_003209479.1| Prophage DLP12 integrase [Cronobacter turicensis z3032]
 gi|260216085|emb|CBA28835.1| Prophage DLP12 integrase [Cronobacter turicensis z3032]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 108/376 (28%), Gaps = 61/376 (16%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     +    G+RI+      +    A        +              T +   
Sbjct: 5   RRGEIWYASYSLPGGKRIKESL-GTADKRQAQELHDRRKSELWRVDRLGDFPDVTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S  + +      +        + IT   I + V   ++       
Sbjct: 64  LRWLEEKADKK----SLDTDKGRMGFWLEHFEGMKLKDITEAKIYTAVSKMQNRKAKEIW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   S+  + L  M+ + + A  +++  +     ++ P+ 
Sbjct: 120 IQKCAAAERKGKEFPVFEGRPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKIPQV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           + + +R    E+ ++  +   E  +      F L +GLR S+      Q +         
Sbjct: 179 RNKRVRWLEPEEAERLINECPEPLKS--VVRFALATGLRRSNIINLEWQQIDMQRRVAWV 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   ++L         +   + K                     
Sbjct: 237 NPEDSKSNRAIGVALNDTACRVLREQIGNHHKWVFVHTKAGNRPDGSATDQVRKMRVDDQ 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + +   +AG+ +   H +R   A+    AG     L    GW++++    Y       
Sbjct: 297 RAWNSACRRAGIEDFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAH----- 351

Query: 330 RLGIKNSRRISSVVDS 345
            L   +    +  +DS
Sbjct: 352 -LAPNHLTEHARQIDS 366


>gi|15839120|ref|NP_299808.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9107738|gb|AAF85328.1|AE004060_3 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 339

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 105/340 (30%), Gaps = 26/340 (7%)

Query: 1   MTPSLRLPPFVTKERTR---HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M         + + R R    G + YY+  G   R   P   +        + L  +   
Sbjct: 1   MGRKPSKTGAIPRFRVRPQKSGVVYYYYDHGGTPRKETPLGRDYGVAIKRWAELEHAQIT 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKIT 115
                       T + +   YR        A N++         +++   D    +  I 
Sbjct: 61  PAI-------AVTFRHVAERYRAEVIPTK-AYNTQRVEHRCLAALLKFFDDPPAPFEAIK 112

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             ++R  ++ R  +  SA + +     L+ W   +     +        +R  E  R   
Sbjct: 113 PVNVRQYLDWR-TSKVSANREVALFSHLWNW--ARSKGITDLPNPCAGIRRNKERGRDVY 169

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +D      + +     R A +    +G R  D      + + + +  I+  KTG  + +
Sbjct: 170 IDDTTYRAVYHAADQTLRDAMDLAYLTGQRVGDVASMDERQIIDGVLLIRQAKTGAKVAI 229

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS--- 285
            +      L+      K    + + +  ++   F          FK     AG+ K    
Sbjct: 230 SITGELAVLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQVFQ 289

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              +R  +AT  AD      +  A  G  +V   E Y + 
Sbjct: 290 FRDLRAKAATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|17546273|ref|NP_519675.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
 gi|17428570|emb|CAD15256.1| putative integrase/recombinase protein [Ralstonia solanacearum
           GMI1000]
          Length = 354

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 107/343 (31%), Gaps = 32/343 (9%)

Query: 11  VTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALT-----------GSTPKR 58
           + ++ T+ G++ +  + +  G  I            A++ A                 + 
Sbjct: 4   IIEKYTKRGEVRFQAKIRRTGVPIASKVFPSREEAEAWIQATEPELQARSRQAARQQAQA 63

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTK 117
           + I   + +P  +  L+  + +             +   +   I+R          +T  
Sbjct: 64  KLIAKFKDRPRIVADLLHRHMQEETVRKKGA---EAETHHISSILRYPLARIHLDNLTRS 120

Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRP 173
            I+   + R     PS+  + L  +    K AV +    +  +   SV RP      +R 
Sbjct: 121 DIKEWRDQRLQDVAPSTVNRELNIINAALKVAVHEWDVAICQSVLTSVRRPSNPPGRVRR 180

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSI------- 224
            + E+    +    E   P +     L   + +R  +      + +     SI       
Sbjct: 181 LSPEEEAALRQAGEETRNPYIVPILDLALNTAMRRGEILGLEWERISFAHRSIQLIETKN 240

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   +   +++     ++ A     +           + A  F + F     +AG+
Sbjct: 241 GTPRGVPLSRHAMKVLATLKQVAAHELGYEGELNSGPVFPGLTANAFKLAFNRMMERAGL 300

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                H +R  + +   + G +  E+ +  G K +   + YT 
Sbjct: 301 ENFRFHDLRHEATSRLFEKGLSVMEVASITGHKDIRMLQRYTH 343


>gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 115/359 (32%), Gaps = 40/359 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGST 55
           M     L   + +   ++G+  YYF+       +G+RI        T+  A    +    
Sbjct: 1   MPRKTNLS--IKEYTLKNGQKRYYFKISLGENSNGKRIVTTRRGFKTYAEA--DQVYNQL 56

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            + +  N  ++   T+  L   + ++    ++  +S IS    +   I    G+    KI
Sbjct: 57  SRVKADNFVKQNQITIDELHKIWFENYK-NAVKESSAISESGIYKNHIKPFFGNQFIDKI 115

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T   ++   + +     +  + +  M  LF++ +R  YV+ N    V  PK+     R  
Sbjct: 116 TVVDLQKWADKKATELVAFRRVIAVMNGLFEYGMRLNYVSSNLVKRVLIPKKTARKRRDT 175

Query: 175 TKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217
            K    + +         +        F+ L  +GLR S+      Q +           
Sbjct: 176 EKNVYTRKELETFLKVAKNFPIMKYTFFKILACTGLRRSECLALTWQDIDFKNNLLHVNK 235

Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QF 269
                  + +     +   +   + +     K L           + +            
Sbjct: 236 TLAYGLNHQVIVQTPKSKKSNRKIPISSSLRKALIEYQKQATHDKLFHTLNGKYLYLGTP 295

Query: 270 SIWFKAKATK-AGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVD-QAETYTK 324
           +IW K    K   + K + HG R   AT+   +       +    G K ++     YT 
Sbjct: 296 NIWLKKIYDKNPDLKKITVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTH 354


>gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308435481|gb|EFP59296.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 422

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 108/350 (30%), Gaps = 37/350 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-------NSPRK 66
            +   G+    +     +R   P   E+        A       R+         N PRK
Sbjct: 15  RKLPSGRFQASYIGRDLQRHNAPTTFETKGDAEGWLAGERRLRDRDDWTPPSVRANRPRK 74

Query: 67  KPTTLKWLISEYRKSAHWGS--LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
              TL     E+ +        L   +R  ++  +   +    GD   + IT   +++  
Sbjct: 75  GDPTLAEWWPEFIERRRVDGEPLRPTTRAWYDQLYRHYLKPTLGDVPLKGITAARVKAWW 134

Query: 124 ESRK-HTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +       SS       ++R     A+ +  +  NPC  ++  ++K   +   T+E +  
Sbjct: 135 DDFPTDRGSSVRPNAYMALRAAMSQALEEGLIITNPCT-IKVQRKKKRELEVATREQVAT 193

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232
             S   E   P        + GLR  +        +     +I+ ++  +          
Sbjct: 194 IHSHMPEAFAP--IVTIAAWCGLRFGEIIELRRGDIDLARRTIRVERAVSRVHGKFIVGP 251

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKA 280
                   TV +P      L                       +   QFSIW++     A
Sbjct: 252 PKSDAGIRTVSMPTAVADELEQHLERHVRPEPDALVFEYCGHHLQQPQFSIWWRYARGMA 311

Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           G  +   H +R  SA   A  GAT  +LMA  G  +   A  Y   A   
Sbjct: 312 GRPDLRLHDLRHTSAVWYAQQGATLADLMARLGHSSPTMALHYQHAAAER 361


>gi|28198917|ref|NP_779231.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681625|ref|YP_001829785.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057015|gb|AAO28880.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631735|gb|ACB92511.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580060|gb|ADN64029.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 98/329 (29%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++         +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVTPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                 A + ++    L+ W   +     +        +R     R    +D      + 
Sbjct: 124 TSK-VIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRSVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  +       +       F      AGV K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDAEGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           CWL029]
 gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           J138]
 gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae
           AR39]
 gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD
 gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029]
 gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39]
 gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138]
          Length = 301

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 29/284 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141
             L   S  ++       +  S     + I+   +    E         ++  + L +++
Sbjct: 24  RGLCQQSIAAYRQDISSFLTISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALK 83

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGSQPR 193
           V F +   Q+ +   P +  E PK         T +++        Q  K+      +  
Sbjct: 84  VFFLFLKDQQLLPYPPII--EHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDT 141

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTPI 250
                L  +G+R S+ C   + H+ ++   +  + + T +        +     L     
Sbjct: 142 AILHTLYSTGVRVSELCDLRLGHVSDDCIRVTGKGSKTRLVPLGSRAREAIDAYLCPFRD 201

Query: 251 GKETFFINNDKQKMNATQF----SIWFKAKATKAG----VNKSAHGVRKFSATISADAGA 302
             +    + D   ++        S  ++     A        S H +R   AT   D  A
Sbjct: 202 QYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKA 261

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    G   +   E YT  A           +  +    +
Sbjct: 262 DLRVIQEMLGHARIASTEVYTHVA-----ADSLIEKFLAHHPRN 300


>gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501]
 gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501]
          Length = 380

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 122/379 (32%), Gaps = 52/379 (13%)

Query: 13  KERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + + ++G   + F+         G+ ++    +  T   A   AL     + E     ++
Sbjct: 6   QYKKKNGDKAWKFQAYLGINPETGKSVKTTRRNFKTQREAK-LALARLQSEYENNLLKKE 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
           KP T + +   +       ++  ++ +  E  F   ++ + GD    +IT   I+  ++ 
Sbjct: 65  KPKTYRDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGDIYISEITPIKIQKLMDK 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
             +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ +        D +Q    
Sbjct: 124 WANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKATVEEPFYDKKQLKLF 183

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFS 223
             + +     + +  F  L  +G+R  ++     + +                       
Sbjct: 184 LDELYNQPNLKIQAFFRLLAMTGMRKQEAGALEWRDIDFKAKTVNIYKAVTRTANGLEID 243

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----KAKAT 278
                  + I         KLL                   +A            +    
Sbjct: 244 TTKTVGSSRIISIDQGTLDKLLEWKEAVLPPSDEWLIFGHSSAKNPHDIMSLDTSRKWLL 303

Query: 279 KAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
                            + HG R   A++  + GA+  E+    G + +     TY   +
Sbjct: 304 NIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVS 363

Query: 327 DRIRLGIKN-SRRISSVVD 344
              +L  +  + + +  +D
Sbjct: 364 ---KLAKEQLADKFNKFID 379


>gi|225871254|ref|YP_002747201.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225700658|emb|CAW95231.1| putative integrase [Streptococcus equi subsp. equi 4047]
          Length = 405

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 113/366 (30%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K ++  G I Y+ +        G  +              A+ +A+        + + 
Sbjct: 3   VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFAHL 61

Query: 64  PRKKPTTLKWLISEYRKSAH---WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +   T + L   + ++       + A  +   +      I+   G+    KI+    +
Sbjct: 62  TAQTTYTYQELYQRWYEAYKDTVETTTAAKTADLYR---LHILPTFGEKKISKISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  +  +  Q  +     F++A+   ++  NP   V  PK K       WT  ++
Sbjct: 119 TFITDKAKSFKNMKQIKSYTSKTFEFAINMNHIERNPMSKVIMPKLKKTVSENYWTVNEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221
             F +   E    +    F L  YSGLR  +      +                 +  + 
Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
               T+ T ++ ++ L D    +L                                + + 
Sbjct: 239 IEKGTKNTFSVRSIYLDDETCSILNKWKQETSKEKGQLSVQPLSLDKEFMFTYCNRDGEI 298

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + ++A   +   K    K  + K S HG R   AT+  + G          G  +     
Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTL 358

Query: 320 ETYTKG 325
           +TY+  
Sbjct: 359 DTYSHS 364


>gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 93/342 (27%), Gaps = 47/342 (13%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T  +  +GK +   Y     G+R+R           A+ +       K+ ++   +   
Sbjct: 1   MTIRKQPNGKWLCECYPSGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLG-EKDDR 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125
             L  +I ++       SL   +    +    +   I    GD    ++T        E+
Sbjct: 59  RQLSEVIEQW------HSLYGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREA 112

Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R                 P +      ++  +F    +  + +    L+     +  EG 
Sbjct: 113 RLKGEVRSEDGALMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172

Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +   D  +        SQ     +  +  L +G R S++       +     +    K
Sbjct: 173 LAFLAPDEIKRLLDACADSQSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTK 232

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                TV +       +        T                  F+    +AG+      
Sbjct: 233 GKKNRTVPISQDLYDEIPRNRGKLFTPC-------------RKAFERAIKRAGIELPEGQ 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321


>gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 408

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 106/396 (26%), Gaps = 71/396 (17%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  +V  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K             +                                   +L M
Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              ++    G K V   E Y    A+     +    
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|169633091|ref|YP_001706827.1| putative phage integrase [Acinetobacter baumannii SDF]
 gi|169151883|emb|CAP00727.1| conserved hypothetical protein; putative phage integrase
           [Acinetobacter baumannii]
          Length = 402

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 108/386 (27%), Gaps = 55/386 (14%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALT-------- 52
           T S  LP      R R GKI   F+    R    L                         
Sbjct: 4   TSSSGLPKG---TRARSGKIQINFKWNDKREWFTLDLIDTPANFIKAAKIREDFVNKAKY 60

Query: 53  ---GSTPKREYINSPRKKPT------------TLKWLISEYRKSAHWGSLAVNSRISFES 97
                   +     P KK              T      EY    +       ++  + S
Sbjct: 61  GILKIEDIKAVTAKPIKKADASQKTLPASNAPTFAHYAQEYL--YNLSDHKQGTKKKYLS 118

Query: 98  YFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI 155
             +++ +    D     IT++ +R+ V  R+ +   +    L  +R +F+ A   E +  
Sbjct: 119 ILERLWMPLFEDMPINTITSQMLRTAVNGREWSSAKTRNDALIPLRGVFELACDDEVIDK 178

Query: 156 NPCLSVERPKRKTEGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           NPC  ++  K + +   P+ + +         + + S+       F    ++G R S+  
Sbjct: 179 NPCDRLKNQKTQEDEPDPFNEMEKEIILNWLKEKYISDYPTVYWYFVVAFWTGCRPSEII 238

Query: 211 RAGVQHLQNNIFSIKTQK------------TGTIITV------ELPDGFMKLLAMTPIGK 252
               Q +      I   K            T     V            ++LL       
Sbjct: 239 ALTWQDVDFLNKQIYINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEH 298

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATY 311
                   K+       S  F A     G+     +  R   AT+    G     + +  
Sbjct: 299 VFICDETGKEFTTQKSLSEKFVASLKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQL 358

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337
           G   V     Y K  +  +   + ++
Sbjct: 359 GHSLVMLMMRYAKWINSDKNKEEIAK 384


>gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
 gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 95/307 (30%), Gaps = 40/307 (13%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL+  + E  + A     ++ +  S+E     I    G     +ITTK  R+  + 
Sbjct: 2   KTDITLETWLGE--QEADVKGSSLKTYKSYERV--HIRPFLGHLYLAEITTKKQRAFKKQ 57

Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + +  +    L+ +R L K    ++        + +      E   P  +E     +
Sbjct: 58  LCESLADKTVRDILSYLRTLLK--RAKQKGYTVCIKTPKTAVEWREKEVPDFQEHKALSE 115

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------------NNI 221
                     +     + +GLR  +     V+ +                         +
Sbjct: 116 KLRHSQKPVDMGILLAMSTGLRLGEVLGLRVKDVDLRASVLHVRANRQRIYDPKTNTYPV 175

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKA 275
                +   +  ++ L       LA                 N   +  +A      F+A
Sbjct: 176 REQTPKTQKSCRSIPLHPALKNALAHYLKNMGNPDKEKPLIANRQGRAYDARTLQRRFQA 235

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRL 331
              + G+    + H +R   AT + + GA+ H L    G  +V     TY     ++ RL
Sbjct: 236 VKKELGLRPGVTFHSLRHSFATRALELGASIHTLSELLGHSSVAFTLNTYGHSVTEQKRL 295

Query: 332 GIKNSRR 338
            ++   +
Sbjct: 296 EMEKIAK 302


>gi|86739910|ref|YP_480310.1| phage integrase [Frankia sp. CcI3]
 gi|86566772|gb|ABD10581.1| phage integrase [Frankia sp. CcI3]
          Length = 394

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 94/359 (26%), Gaps = 35/359 (9%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G+    +    G++   P              L      R     P +   TL    + 
Sbjct: 15  SGRYQVRYPGPDGQQRTAPETFARKSEAERYLTLIEGQILRGEWIDPERGKVTLTDYAAR 74

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSA 133
           +       +L   +   +       I    G     K+TT  IR        +     + 
Sbjct: 75  WI--VERPNLRPRTIGLYSGLLTRHITPYIGGIPIGKLTTPIIREWRTKLLESGVSVGTT 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +    +R +   AVR++ +       +    ++    RP               G + R
Sbjct: 133 AKAYRLLRAVLMTAVREDELIRTNPCRIPGADQENAPERPVLTVSQVFAL-AEKLGGRYR 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------TGTIITVELPDG 240
                  ++ LR  +      + L  +   +  ++                         
Sbjct: 192 ALVLVTTFASLRWGEVAALQRRDLDTDDGIVHIRQSLVEIGGQGVVLGPPKSRAGVRTVS 251

Query: 241 FMKLLAMTPIGKETFFINNDKQKM----------NATQFSIW--FKAKATKAGVN-KSAH 287
              ++          ++ +D                  F     +       G+     H
Sbjct: 252 LPAVILPWLRIHLAEYVADDPAAFVFTGPKGGFLRRGNFRKLVGWSDAVAAIGMPNLHFH 311

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R    T+++  GA+  +LM   G  +   A  Y   +      I  +  +S+V+ + 
Sbjct: 312 DLRHTGNTLASRTGASLRDLMTRMGHDSPRAALIYQHASTEADAAI--ADALSAVLAAQ 368


>gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 113/369 (30%), Gaps = 50/369 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
             +        +I Y FR         G+R +       T   A M          E   
Sbjct: 3   KRIKSYLNSKNEIRYMFRVYAGIDNMTGKRKQTTRRGFKTEREAKMELKRIEMQIFEEGG 62

Query: 63  -SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +KKP   + +   + +     ++  ++    + +F+  I+    D    KI     +
Sbjct: 63  LKTQKKPLKFEEVYFTWLELYT-QTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQ 121

Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPW 174
             + +   + P+S  +       +FK+A+    +  +P         E  +++ + I  +
Sbjct: 122 QVINTWSKSNPASYKRLKNLTSRVFKYAISLHLIENDPFAFVVVPRGEMIEKEEKDITFY 181

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            K +++ F     + +     F  L ++GLR S++       +  N   +   KT +   
Sbjct: 182 DKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWNDVDLNNKRLYVNKTLSRGE 241

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFI---------------NNDKQ 262
                            + +    + +L      +                    N    
Sbjct: 242 HARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNEGNYYNP 301

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
               +     FK       +  ++HG R   A++  +AGA+  ++    G   +      
Sbjct: 302 SSTYSWLDNIFKHHTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNI 359

Query: 322 YTKGADRIR 330
           YT      +
Sbjct: 360 YTHVTQEKK 368


>gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++                  +             +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K  +        V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|227539186|ref|ZP_03969235.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240868|gb|EEI90883.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 77/284 (27%), Gaps = 30/284 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128
            ++        N+   + +    +           D   R I    I             
Sbjct: 120 MEALLGKGFKPNTLKGYNTSVAHLTSYLEKCYGETDIAIRHIDHAFITGYEFFLRSDMGC 179

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--EDMQQFKSFW 186
           +  SA +++  +R +    +   ++   P    +   +  E     +   + + Q +   
Sbjct: 180 SVVSAAKYMKHLRKIINQCLAHRWITETPFAFYKTKAKPREKEFLTSDELDRIAQKEFSI 239

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GF 241
           +  +  R  F F  Y+GL  +D  +     +   I       T    T    +       
Sbjct: 240 TRLAHVRDIFVFCCYTGLSYADVQKLQKTDIAKGIDGRLWVLTSREKTKTSSNIPLLPQA 299

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-A 298
           ++++                  ++  + + + K  A   G+    + H  R   AT    
Sbjct: 300 LEIIERYADYPSCVARGMVLPVLSNQKMNSYLKEIADLCGITKKLTFHMARHTFATTVTL 359

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD----------RIRLG 332
                   +    G   +   + Y K  D          + RL 
Sbjct: 360 ANNVPIETVSKMLGHTNIKTTQHYAKLLDTRIGSDMDALQKRLA 403


>gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17]
 gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17]
          Length = 338

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 79/311 (25%), Gaps = 37/311 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSG 122
           ++    +Y +       + ++  ++      +     D             +    + + 
Sbjct: 13  VESFFRDYLQ--RLRGASAHTVRAYRDTLRLLFIYLADTKDSTVANLRLNDLHVDAVAAF 70

Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
                  R ++ ++      ++R   K  +R +         +     K       T   
Sbjct: 71  LTQLESDRANSIATRNCRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKCQQNLATYLE 130

Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
                  + Q       G +      FL  +G R S++       L            K 
Sbjct: 131 AAEVHAILDQPDCRTVLGQRDYGLLLFLYNTGARISEALTVCCADLHLTPPRQVRLHGKG 190

Query: 230 GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                  L     + L   P  ++       F+N   Q +     +   +     A    
Sbjct: 191 KKDRLCPLWRDTAQALLRLPTVRDGAPGAFVFVNRQGQPLTRDGAAYLLQKYVVAAIPTA 250

Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKN 335
                   + H +R   A     +G     +    G  ++     Y T      R  ++ 
Sbjct: 251 PTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEA 310

Query: 336 SRRISSVVDSD 346
             + + +  ++
Sbjct: 311 FWKRAGIEPTN 321


>gi|239622960|ref|ZP_04665991.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522612|gb|EEQ62478.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 395

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 100/366 (27%), Gaps = 61/366 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + GK    +    G R    +           + L  +  + ++         T+     
Sbjct: 18  KDGKYAARYTAKDGSRKEKHFDTLPEA----RNWLADAQYEDKHDVCNTSSEMTVDAWFE 73

Query: 77  EYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
            +  +     LA N+R ++   Y   I    G+     +   H +  +   + T   S+ 
Sbjct: 74  FWITNLIA-DLAPNTRRNYRERYQKNIQPVIGNMRLCDVKPMHCKIVLNRMEATYAGSTI 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            Q   +M  +F+ AV  + +  +P   V    P R  + I+  T E+   F       S 
Sbjct: 133 RQAYIAMGTMFRAAVMNDMLTKHPMDGVRYTKPVRAVDDIKFLTVEEQTLFLETAKR-SH 191

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FM 242
               +  LL +GLR S+        +     ++   KT      E             + 
Sbjct: 192 NYRQYVLLLETGLRTSEMIGLTWDAIDWKKRTLTVNKTLEYRHSEGIWRAGPPKTKTSYR 251

Query: 243 KLL---------------------------------------AMTPIGKETFFINNDKQK 263
            +L                                           +    F      + 
Sbjct: 252 TILLTKRAYDVLKSCYDERFTRKESELLSQILEYVDRRTGQTEYLCMRDLVFINFRTGEP 311

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
              + +         +A + +   H +R   AT + + G     L    G  ++      
Sbjct: 312 AKNSSYDTHLYKLCDEAKIKRFCMHALRHTYATRAIERGVMPKVLQKLLGHASIKTTMDR 371

Query: 322 YTKGAD 327
           Y    D
Sbjct: 372 YVHVTD 377


>gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 369

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 93/351 (26%), Gaps = 36/351 (10%)

Query: 10  FVTKERTRHGKII--YYFRK----GHGRRIRLPYP---HESTFIPAYMSALTGSTPKREY 60
           +  +   + G++   +          G+R  +      +      A+   L         
Sbjct: 4   YKKRWTGKDGRVRTKWMVHIKHTGPDGKRKEIRRVSPVNTRRGAEAFERELRDKLFPGAR 63

Query: 61  INSPR----KKPTTLKWLISEYRKSAHWGSLA------VNSRISFESYF-DQIIRKSGDF 109
               R    +   TL+    E+         +                  + +I   G+ 
Sbjct: 64  GKDKRTQHIRSAPTLEDFAPEFLAFQASPGASRKGPNKPGELREKRRTLDNHLIPAFGEL 123

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSV 161
              +I  + I   +  +     + S+    L  ++ L   A R E +        P    
Sbjct: 124 RLDEIRARDIDRYITRKHADGLSTSTISNHLIVLKRLLNVARRWELLDRIPEIPTPKKPA 183

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  +  R       +Q++S    G +  L    L     R  D     V+  Q   
Sbjct: 184 RTDFLSKDEARALLVGAEEQWRSLVLLGLRTGLRLGELRGLRWRDVDLEGGRVRVEQAVT 243

Query: 222 FSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKA 275
            +           +V L     + LA+    +           +D + +           
Sbjct: 244 NAGIGTPKSGKGRSVPLARDIREALAVRRGPRRRKPDTLVFAQSDGRPLAHNTIGRALTR 303

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            A  AG+ +  + H +R   A+ +  AG     +    G   +     Y  
Sbjct: 304 AAEAAGIERRITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAH 354


>gi|323937177|gb|EGB33457.1| phage integrase [Escherichia coli E1520]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 12/271 (4%)

Query: 63  SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + + +  T++  I   +         +   +         +    G    R IT   +  
Sbjct: 86  AVQSRRFTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +    PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++
Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEI 203

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +F +  +   +    +    LY+G+R  + C    ++   ++  +    T +      P
Sbjct: 204 PRFINAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292
                +  +               ++             F      A ++    H +R+ 
Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPQLTDNARPLAYPRATFARICRDANIDNLRMHDLRRT 323

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT    A              ++     Y 
Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354


>gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90]
          Length = 345

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 82/317 (25%), Gaps = 40/317 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +        +   N  +    TLK LI+ +  SAH  +L 
Sbjct: 21  KGKRIR------KKFATKGEALAYEQHAVQLPWNEEQTDRRTLKDLITSWY-SAHGITLK 73

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136
                  +          G+        +      E R            + +P +    
Sbjct: 74  DG--EKRQLAMLHAFECMGEPLAVDFDAQMFSRYRERRLKGDFARSSRVKEVSPRTLNLE 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---R 193
           L   R +F    R         L   RP R  E    W               S      
Sbjct: 132 LAYFRAVFNELGRLGEWKGENPLRHIRPFRTEESEMAWLTHSQIAHLLAECRNSDQADLE 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
              +  L +G R S++       +     +    K     TV + +   +++     G+ 
Sbjct: 192 TVVKICLATGARWSEAEGLKKSQISKYKITYIKTKGRKNRTVPITESIYRIIPENKTGRL 251

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309
                              F++   + G+   A    H +R   A+     G     L  
Sbjct: 252 FADCYG------------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNLLVLQR 299

Query: 310 TYGWKTVDQAETYTKGA 326
             G   +     Y   A
Sbjct: 300 VLGHTDIKMTMRYAHFA 316


>gi|293413792|ref|ZP_06656441.1| prophage DLP12 integrase [Escherichia coli B185]
 gi|291433850|gb|EFF06823.1| prophage DLP12 integrase [Escherichia coli B185]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKPGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E  +     +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum
           GMI1000]
 gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2
 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 347

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 92/306 (30%), Gaps = 30/306 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127
           L   +  + ++      + ++  +      +      + G      +T   +        
Sbjct: 19  LTRYMEAHFEALLVTGYSADTVRARRISIRRFIVWCEERGIAQPADVTRAVLERYQRHLF 78

Query: 128 H---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +         T  S    L  ++  FKW  R+ ++  NP   ++ PK      R      
Sbjct: 79  YYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASELDLPKLPKHLPRAILSVQ 138

Query: 179 MQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGT 231
             +            G + R   E L  +G+R  +     +  +        ++  K   
Sbjct: 139 EVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYDVDATRRLAFVRDGKGAK 198

Query: 232 IITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282
              V +    +  L    +              F+ +  + ++    +   K     AG+
Sbjct: 199 DRVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGI 258

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
               + H +R   AT   +AGA    L A  G   ++  E YT  +      I ++   +
Sbjct: 259 QKPGATHLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPA 318

Query: 341 SVVDSD 346
            +   D
Sbjct: 319 RLQRED 324


>gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 414

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 106/399 (26%), Gaps = 74/399 (18%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +  +G   Y +R    R   +     +         L     K         K  T++
Sbjct: 18  EYQRPNGTYEYRWRDKCRRNHTIYAKSLAELREKKNLIL-----KDTLSGIKISKNITVR 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVE----SRK 127
            L  +++       L  N+  +++  ++  +    G+   + +    IRS        R 
Sbjct: 73  DLYKKWK--VLKQGLKDNTFKNYQYLYEYFVDDNLGNVLIKNLKKSDIRSFYNYLAEERN 130

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQF 182
              ++     T +  +   AV  +Y+  NP  +      +      +  +  T  +   F
Sbjct: 131 VKVNTIDNIHTVLHQVLDLAVDDDYILKNPSDNALKELKQSRTNGKKSRKALTLAEQNLF 190

Query: 183 KSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------- 218
           + F    ++       F  +L++GLR  +        +                      
Sbjct: 191 EDFLRTNNKYKGWYPIFITMLWTGLRVGEVTGLRWDDIDFNNNTISVNHTLVYYQTRTER 250

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQ 262
             +      +      TV L     + L M    +                  F+N    
Sbjct: 251 GCDFTVNTPKTKAGERTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGD 310

Query: 263 KMNATQFSIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELM 308
             +    +   K                      N S H +R    T   +AG     + 
Sbjct: 311 LYHQGTLNKALKRIIRDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQ 370

Query: 309 ATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
              G   +      Y + +    L         + ++++
Sbjct: 371 DILGHSDISTTMNIYAEAS--KDLKEIEMENFGNKIENN 407


>gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215]
          Length = 382

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 97/375 (25%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R       Y F+    +              A                    +P TLK 
Sbjct: 5   RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSG---DFDYRKITTKHIRSG 122
            + +Y ++    S   N                    +   G   D    ++TT+ +   
Sbjct: 63  ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDRLLHELTTRDVDLL 122

Query: 123 VESRK---HTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173
           V  RK     P++    +  +R          + V +E +      S       +     
Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIIFPELRTSYRLRYLDSSDESA 182

Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              E   +        S+P                 FLL +G R S+        +  + 
Sbjct: 183 LLLELDPERLKTRINSSKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINLDT 242

Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277
            +    +++     +          L       +       + +  N   +S    K   
Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302

Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AG+N            + H +R   A+    AG + +E+    G       + Y   +
Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362

Query: 327 --DRIRLGIKNSRRI 339
             D  R  +K    +
Sbjct: 363 PNDASRKAVKVIDSL 377


>gi|28198301|ref|NP_778615.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182680938|ref|YP_001829098.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056371|gb|AAO28264.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631048|gb|ACB91824.1| integrase family protein [Xylella fastidiosa M23]
 gi|307579406|gb|ADN63375.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212]
 gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212]
          Length = 316

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 84/268 (31%), Gaps = 30/268 (11%)

Query: 91  SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSS---AIQFLTSMRVLF 144
           +R ++E+     +  +G  +  +   +T  HI +  +   +   S       L ++  LF
Sbjct: 38  TRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLMNRSLSSMSIRHRLAALSSLF 97

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAFEF 198
           ++   +  V  NP   V+RP  ++   +     D Q  K          +G + R     
Sbjct: 98  EYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKLLDAPDGSSLKGKRDRAILAT 157

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT------ 248
           LLY  LR  + CR  V+  +     +   K          V L      L+         
Sbjct: 158 LLYHALRRDELCRLKVKDFKQERRGVPHMKISGKGGKTRYVPLHPAASGLIHDYLDAAEH 217

Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
                               ++ +         +  + K G    AH +R  +AT + D 
Sbjct: 218 GLEDTGALFRSTSNNRDKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALDH 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
            A   ++    G   +     Y     R
Sbjct: 278 QADIAKVQEWLGHANIATTRIYDHRRTR 305


>gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
 gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656]
          Length = 331

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 90/269 (33%), Gaps = 15/269 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESR 126
           L      Y  +     +++ S   +         K  + +  KI+T  IR       + R
Sbjct: 52  LPECYETYFVTRKIEGMSMKSLELYNLVLKDFFFKL-NKEICKISTNDIRVYLYKNQQER 110

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+     T +   F+WA  + Y+  NPC +++  K +    +P T  ++++ ++  
Sbjct: 111 NLSNSTLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYERPKRKPLTGIELEKVRNAC 170

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +  + +   E    +G R ++  R  +  +      +     G    +   +   ++  
Sbjct: 171 -DNLKDKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAI 229

Query: 247 MTPIGKETFF-------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297
              +                   ++         +    K+G+ +    H +R  +AT  
Sbjct: 230 RNYLDSRNDNEEALFVSDRKPYGRLKKPAIEKRIRVLGEKSGIGRRLYPHLIRHTTATDG 289

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            D G    E+    G   +     Y + +
Sbjct: 290 LDRGMPVEEVQQILGHVNIATTMIYAEVS 318


>gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 314

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 85/281 (30%), Gaps = 27/281 (9%)

Query: 71  LKWLISEYRKSAHWGSL-AVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG---V 123
           ++  I+++ ++   G   +  +  ++        +   + G  +  ++    +R+     
Sbjct: 3   IETAIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAE 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            SR  +  S  +   ++R L++   +      NP   +  P+ +       T +  +   
Sbjct: 63  RSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLM 122

Query: 184 S----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                          G + +L  E L  S LR S+     +  L  +  +++    G   
Sbjct: 123 QPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKE 182

Query: 234 TVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKAT-KAGVN 283
            +              +              F+N   Q++      +  K     + G  
Sbjct: 183 RIVPVGQPAWAALRAYLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLGDARLGQP 242

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R  +A+    +      +    G   +     YT 
Sbjct: 243 LHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTH 283


>gi|54296054|ref|YP_122423.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris]
 gi|53749839|emb|CAH11220.1| hypothetical protein lpp0072 [Legionella pneumophila str. Paris]
          Length = 406

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 108/360 (30%), Gaps = 34/360 (9%)

Query: 10  FVTKERTRHGKIIYYFR-KGHGRRIR--------LPYPHESTFI-PAYMSALTGSTPKRE 59
            +       G   + FR    G+R +        +        +  A      G  P   
Sbjct: 25  GLGIRVMPGGGKSWIFRFTFDGKRYKMTLGKYPGIGLKEARELMLDAEHLKEQGINPIEY 84

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                 K   T+K L   +        L    +    +     II   GD    ++ TK 
Sbjct: 85  AKQQQAKSDNTVKKLAFSWYTQYVEKHLKRPLTVK--KQIDGDIINLLGDRVLDELETKD 142

Query: 119 IRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPKRKT 168
           I   ++      +S  A + L+S++ +F +AV +  ++ NP            E+P+ + 
Sbjct: 143 ITEALDKIVKRGASVHANRVLSSLKQMFGYAVSRGTMSTNPASNIRARDIGGHEKPRERV 202

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +       +           Q R+A + +L +G+R ++   A    +  +        
Sbjct: 203 LSLDEIKSLWLFLDSKDSQMAPQTRIAIKIILLTGVRTAELRLAQWSEINFDDSLWTIPA 262

Query: 229 TGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +  ++        L       L             + +Q +         K    + G
Sbjct: 263 MHSKASIVHKVHLSDLTKQLLQQLKSISRSDYVLTGADYRQPLTENALPRAIKRIQERLG 322

Query: 282 VN-KSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSR 337
           +   +AH +R+  AT   +        +    G K      TY   +   + R  ++   
Sbjct: 323 IPEWTAHDLRRTFATQLGETLQVDPVVIEKCLGHKMPRIMATYNCNEMLPQRREALERWA 382


>gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
 gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans
           ATCC 33394]
          Length = 357

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 17/288 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAI 134
           +Y +     + + ++  +++    Q+     +   +            +  R    S+  
Sbjct: 66  DYLREQTQLNRSAHTLAAYQRDLWQLQTLLPEACENPTAQDFSAALKTLSQRGLNASTLA 125

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           + LT  R   K+  ++E    +P   ++ P++     R   +E +Q       E      
Sbjct: 126 RKLTVWRQYAKFVQQKEAADASPAERLKAPRQAQRLPRAIERETLQYLLDQAPEAGDALA 185

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E    SGLR S+ C   +  +  +  +     K G    V L    +  L   
Sbjct: 186 VRDHAVAELFYGSGLRLSELCALNLHDIWLDEGWVSVHGKGGKQRHVPLTQHSIAALRAW 245

Query: 249 PIGKETF------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADA 300
              + T       F     +++   Q +   +  A + G     + H +R   A     A
Sbjct: 246 LARRTTADSESALFTGRYGKRLTTRQIAKRLQHWAAERGSLQTITPHMLRHSFAGHLLQA 305

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
                 +    G  ++   + YTK  AD +      +   +     DD
Sbjct: 306 SHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRARRKPVDD 353


>gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019]
 gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019]
          Length = 277

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 78/263 (29%), Gaps = 4/263 (1%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +  P + +  ++ + +         ++         ++ R   +     IT + + 
Sbjct: 3   KIKRKLLPNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLL-NQPPEDITGQQLV 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +     +   + +++R  + + + +E + +NP + + + +++     P     ++
Sbjct: 62  ELFAHQDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIR 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      +           GLR S+  +     +       +    G          
Sbjct: 122 GALARVRGNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPI 181

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
              L  +        F       + A+  +          G   S H +R   AT + ++
Sbjct: 182 APDLAQIIANKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYSTHSLRHRYATNAYES 238

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 +    G  +V+  + Y 
Sbjct: 239 THDLLLVSKLLGHASVETTQIYI 261


>gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 413

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 112/342 (32%), Gaps = 54/342 (15%)

Query: 57  KREYINSPRKKPTTLKWLIS-EYRKSAHW--GSLAVNSRISFESYF-DQIIRKSGDFDYR 112
           + E       +  TL+  I  E+         +L+  +  ++  +  ++I+   G  +  
Sbjct: 63  EVEAGEYIAPQKMTLRQFIENEWEPKYASNTENLSPLTYQTYMHFIENRIMPVFGHKNLE 122

Query: 113 KITTKHIRSGVESR------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I T HI + +               K +P +       ++ +F  A   + +  NP + 
Sbjct: 123 DIRTLHIVTFINDLSKPEARKDGKSGKLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVG 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V++PK +      + +++ ++  +  S+  +  RL     +  G R  +       ++  
Sbjct: 183 VKKPKVEQTEFDFYDEDEAREAIAALSKEPRRWRLLILGSMVGGFRRGELLALEWSNVDF 242

Query: 220 NIFS-----------------IKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252
           +  +                    +   +   V++PD +M  L +               
Sbjct: 243 DNMTLSINKSISLTKDGRAVEKAPKSKSSKRIVDMPDWYMDELKVHEYEWKKEKLSVGDK 302

Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                 +  F     +  + T  + W+     +  + +   H +R  SAT+  +AGA+  
Sbjct: 303 WRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTKRHNLKRVRFHDLRHSSATLLIEAGASMK 362

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
            +    G          Y       ++    + + +    ++
Sbjct: 363 AVQQRLGHSKHQTTADIYAHVT--KKVSRDTAEKFNKFAPNN 402


>gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 408

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 106/396 (26%), Gaps = 71/396 (17%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQDRWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIVEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  +V  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGFVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K             +                                   +L M
Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              ++    G K V   E Y    A+     +    
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 249

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 21/215 (9%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187
           S  +   ++R L  +A+RQ  V  +    V  PK+ +   +  + + + +          
Sbjct: 1   SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAAHSAPG 60

Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------- 236
             G +     E L  +G R S++    V  +  +  +   +  G                
Sbjct: 61  AAGLRDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGSYAKD 120

Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
                       LA    G    F+N     M+        +  A+ AG+    S H +R
Sbjct: 121 ALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSPHTLR 180

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              AT   + GA+  ++    G  +V   + YT+ 
Sbjct: 181 HSFATHLLEGGASVRDVQELLGHASVQTTQIYTRV 215


>gi|251772914|gb|EES53473.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 342

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 100/330 (30%), Gaps = 24/330 (7%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            + G + +  + +  G  ++    +    + A+ + +     +  +++    + T L   
Sbjct: 5   DKRGDLQWRDQIRRKGYPVQRKTFNSRAEVEAWAAVVESEMARGIFVSRAEAEKTILDEA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  Y +             S    + +            I    +    +      +P +
Sbjct: 65  LDRYEREVTSCQKGAVQYASLIRIWKR--TPFAARFLSSIQGSDLAKYRDEWLKSVSPKT 122

Query: 133 AIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               L  +  LF  A++   +   +NP   + +PK      R     +M +  S   E  
Sbjct: 123 VSHELGILSRLFHTAIKDWGMGGMVNPVSQIRKPKLPKGRDRRLLPGEMDRIISAS-ESP 181

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248
                  F L +G+R S+        +     +      K G    V L    +++L+  
Sbjct: 182 VLSDIIRFALETGMRRSEIAGMTWDLVDLKKRTTTLPETKNGEKRIVLLSMEAIRILSNL 241

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------------NKSAHGVRKFSA 294
           P   +          +         +A+A                   + + H +R  + 
Sbjct: 242 PRRIDGKVWGMGPDSITHAFIRALTRARAIYEKDREEKGEKPDDSFLADLTFHDLRHEAT 301

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +   + G    ++ A  G KT+   + YT 
Sbjct: 302 SRFFEKGLNPMQVAAITGHKTLQMLKRYTH 331


>gi|21222400|ref|NP_628179.1| integrase [Streptomyces coelicolor A3(2)]
 gi|15021279|emb|CAC44721.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 380

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 107/378 (28%), Gaps = 36/378 (9%)

Query: 1   MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M    +      + R    G+    +    G          +T              +  
Sbjct: 1   MAGKRKSRRGFGRVRKLPSGRFQARYPGPDGVLRPADRTFATTTDADRWLMRKRIEIEEG 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118
               P +  TT++   + +  +     L   ++ S+ S  + +I    GD +   +    
Sbjct: 61  CWLDPAEGQTTVRDWAARWLAAVSPQ-LKHKTQASYRSLINSLINPVLGDRELSSLRPIT 119

Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   V + +    SA +       +  + + AV  + +   PC  V  P+         T
Sbjct: 120 VTEWVGAMRTKGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVRLPRMPQTEPHILT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
             +  +     ++     +A     Y+GLR  ++       +  +   +   +       
Sbjct: 180 PLEASRIVKGATKPHDLLIALL--AYAGLRVGEAFALRRVDVDVSGGFVLVDENLAEANG 237

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275
             +         +LL + P   +    + +                       ++     
Sbjct: 238 VLVFDTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFTTPGGKPLRYNQWRKAYFD 297

Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330
              + AG+ + + H +R    T  AD  G          G          Y +  A R  
Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355

Query: 331 LGIKNSRR-ISSVVDSDD 347
              + +   +S   D+DD
Sbjct: 356 QVAEAADSWLSGSEDNDD 373


>gi|307694467|ref|ZP_07636704.1| phage integrase, N-terminal SAM domain protein [Ruminococcaceae
           bacterium D16]
          Length = 327

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 66/257 (25%), Gaps = 12/257 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI 134
           +  +      +  +   +      ++            +   K++     SRK +  +  
Sbjct: 56  FINAKRIEGCSEKTLSYYRQTIVSMLSGIDKEPQEIVTEDLRKYLTEYQTSRKSSKVTID 115

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +   F W   ++Y+  +P   + + K        +T E ++  +       +   
Sbjct: 116 NIRRILSSYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDNCC-NVRDLA 174

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             + L  SG+R  +        +  N               V         L      + 
Sbjct: 175 MIDLLASSGMRVGEMIALNRDDINFNERECVVFGKGSKERIVYFDARTKIHLQNYLESRT 234

Query: 254 TFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                                     +    +  + +   H  R+  AT + D G    +
Sbjct: 235 DTCSALFVSLTAPNDRLQIGGVERRLRELGKRLNLPRVHPHKFRRTLATSAIDKGMPIEQ 294

Query: 307 LMATYGWKTVDQAETYT 323
           +    G + +D    Y 
Sbjct: 295 VQQLLGHQKIDTTMHYA 311


>gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
 gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus
           sp. WH 8109]
          Length = 318

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 68/277 (24%), Gaps = 29/277 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRK-- 127
           LI  +         +  +   ++    +  R           R+I     +  V   +  
Sbjct: 29  LIKRFLTQCSRSGSSE-TVRGYKREIREFTRWRDRNHPHLHLREINAAFCQDWVSQLREQ 87

Query: 128 -----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178
                  P +  + + ++  L++WA       +        P R        T+      
Sbjct: 88  VDAGLMKPRTFNRRIAAISSLYRWASEASRSPVTGVPRNPVPTRSLLQAPKTTRGISEEA 147

Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                  ++Q  S      +     +     G R S+      + ++      +    G 
Sbjct: 148 VATLLAVIRQAFSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDDGGQIHLFGK 207

Query: 232 I------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                            + L         F     +  +         +     AG +  
Sbjct: 208 GSKRRTVRVSAATLDLFQELGRGDAEAFVFPSPRGEGHLTRQAIGDVCRKWGRAAGFHVH 267

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            H +R   AT +   G     L AT G  +      Y
Sbjct: 268 PHQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHY 304


>gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus]
 gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 20/335 (5%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R R     Y   +    G+R         T   A  +A       ++ IN    +  TL
Sbjct: 4   YRKRPNGWEYRINYYDSTGKRKPKSKGGFRTKSEAIKAATEMELKLQDNIN--VDEDITL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                ++ +     +++  +  ++ +   +I    GD   + IT    +  + S   T +
Sbjct: 62  YDYFKQWCEVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  +F   ++   + AV + Y+  N C   +   +           ++++++    E 
Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181

Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
           S+        A   +  +G+R ++     V  ++ +   +   KT      T  +P    
Sbjct: 182 SKHPEYASYTALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296
             +   P+  E     +     +  +       +   K      G     H +R   A+ 
Sbjct: 242 SSIREIPLDDEFINFIDQMPPTDDGRLLPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                     +    G + ++   E Y       +
Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336


>gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           A/HAR-13]
 gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13]
 gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT]
          Length = 300

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 82/266 (30%), Gaps = 24/266 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141
             ++  S  ++       ++++      +I  + +          K + ++  + L +++
Sbjct: 23  HGISPLSVQAYCQDVLLFLQRASIEATDRINQESVFLFVEKCHKAKESETTLARRLIALK 82

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPR 193
           V F +    + +   P +  E PK         + E++                  S+  
Sbjct: 83  VFFHFLKDAKMLDQQPFI--EHPKIWKRLPSILSTEEVNSLLDQPLNIPNLDTHIASRDA 140

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--------- 244
                   +G+R S+ C   +  + ++   +  +   T +          +         
Sbjct: 141 AILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRLVPISIKAKQAIDAYLSSFRD 200

Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
            L      +E  F++   +K++ +         A      + S H +R   AT   +  A
Sbjct: 201 ELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKRISPHSLRHAFATHLLNNHA 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G   +   E YT  A  
Sbjct: 261 DLRIIQEMLGHSRISSTEIYTHVASE 286


>gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 362

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 37/356 (10%)

Query: 10  FVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +T  + + G+ +  F        +++  Y +  T+  A    L G      Y++     
Sbjct: 5   GITITKRKDGRYVGKFIADYADNGKVQYHYVYGKTYEEAESKVLIGREIATRYLSGRY-- 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
             T++ +  E+  +     +  ++  ++ + F   I+ + GD     +T   I + +  +
Sbjct: 63  -ITVEKIYVEWLNAV-VNRVKESTLANYRNKFEKHILPEFGDVPCADLTAGKINAFINQK 120

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA       T  + + K+A  +    ++    V     + +  +    E  +   
Sbjct: 121 LADGLSASYVRDIFTVFKTMLKYAQDEYGFKLSLKSVVLPKAARKQIEKISDTEQKKLVS 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
              S  S         L+ GLR  + C    + +      +  ++T              
Sbjct: 181 YLKSNMSLTAFGILLSLFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISSANGNRKTK 240

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                         + +PD  MK   M     + F I+   + +        +K     A
Sbjct: 241 IVISAPKSATSFREIAIPDMLMKYFEMFRDEADYFIISGTNKPVEPRTMQYRYKKILQSA 300

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLG 332
            V + + H +R   AT SA+ G     L A  G  +V      Y         RL 
Sbjct: 301 EVEDHNYHKLRHTFATNSAEKGFNVKALSAVLGHSSVTLTLNRYIHPDRTYERRLM 356


>gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 418

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 95/309 (30%), Gaps = 18/309 (5%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQI 102
             Y +A   +    E      +  +         +++ H  S + +  +++       +I
Sbjct: 105 KEYDNAALYADTDAEQAEQLERSRSNFIEYFDHVQRTRHAHS-SDSIIVNWRRVHELLKI 163

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQE 151
             KS    + ++  K + S  +   + P           ++A  + +  +   K A    
Sbjct: 164 FAKSDTILFSQMDLKLVESFRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDG 223

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y+ I+    V+  + +       T E++ +      +    R A  F   +G+R  D  +
Sbjct: 224 YLTIDIAAKVKGIQERESRREYLTIEELNRLAQTPCDPLLKRAA-LFSALTGIRHCDIQK 282

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                ++      +   T             +        ++   +       + +  + 
Sbjct: 283 LKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINR 342

Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             K     AG+  + + H  R   AT+    G   + +    G   V   + Y K  D  
Sbjct: 343 PVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 402

Query: 330 RL-GIKNSR 337
           +    +  +
Sbjct: 403 KEKATETIK 411


>gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155]
 gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155]
          Length = 328

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 84/260 (32%), Gaps = 23/260 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRV 142
              A  +R S+     +I +     +  +IT + ++        T +  +       +  
Sbjct: 19  QGKAHRTRDSYLRALRRINKML-TLELDEITEEDLKKYFLKLLRTYAVPTVKSDRCGLAF 77

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +K+ + +E+            +   +     T++++    S+     + R+    +   
Sbjct: 78  FYKYVLSREFNWGKIIR----IQTVHKLPSVLTQKEIAHVLSYVKR-WRHRVCLTAIYSM 132

Query: 203 GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           GLR S++ +     +        I+  K      V LPD  ++++    +   +      
Sbjct: 133 GLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPLPDLSLQMINDFWLSHRSPNYIFP 192

Query: 261 KQKMNAT-----------QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
           + +  +                 F+    ++G+    S H +R   AT   + G     +
Sbjct: 193 QIRDKSNMVNIDKHMYIGAVQGAFRMAVLESGIMKRVSVHNLRHSYATHMMEKGVPIMAI 252

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G + +     Y +  +
Sbjct: 253 QEILGHRDIKTTMIYARLTE 272


>gi|258405086|ref|YP_003197828.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
 gi|257797313|gb|ACV68250.1| integrase family protein [Desulfohalobium retbaense DSM 5692]
          Length = 371

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 88/331 (26%), Gaps = 23/331 (6%)

Query: 11  VTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +  ++ R+GK    +   R+    + R+              AL         I   R  
Sbjct: 1   MPSKKKRNGKMVGWLAQVRRQGVNKSRVCAT------REEALALEAQWKAEIKIEEERTT 54

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR 126
           P T+    ++Y   +     +  +        D ++R  G + + R IT  +  + ++  
Sbjct: 55  P-TVLEWGNDYLDFSK-KRHSERTYEEKRYALDLLVRAVGGETEVRHITVGNALAILDDV 112

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFK 183
             + +   A Q   ++   + W  R      +      +  +   +              
Sbjct: 113 AERRSGYVANQVRKNLLAAWNWGNRYLDKWPDMASPFGKVERYSYQKRPRVVPPMEDVQA 172

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTIITVE 236
                    R      L++  R  +  R   + +              +           
Sbjct: 173 VLEIMDETDRAMLLAYLHTAARRDEIFRLQWEDIDFANSKIALWTRKRQGGAWEADRIPM 232

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
             D    LL     G     +   +          W      +AGV   S HG+R  +A+
Sbjct: 233 TRDLREALLKERGKGNGHGLVFCREGGRKYQYRRHWIPYWCDRAGVPLFSFHGIRHLAAS 292

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                      + A    K+ +    Y    
Sbjct: 293 WLDAHNVPLTTIQAVLRHKSANTTAKYLHEL 323


>gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 352

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 94/334 (28%), Gaps = 35/334 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y      RRIR    +      ++ +        + ++     +   L
Sbjct: 4   RKLPNGKWLCECYPNGRDSRRIR-KTFNTKGEAESFETYTMREVEDKPWLGEKEDRRN-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             LI  +  + H  +L+ +   S       I    GD    K+T K      + R     
Sbjct: 62  SELIELW-NNLHGQALSAS--KSRMGKLRIICNGLGDPVASKLTAKDWAHYRDKRLRGEI 118

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174
                         P +  +    +  +F    R  E+   NP   +   K     +   
Sbjct: 119 DNGYHSDPKMWIAKPITVNREHQYLYAMFNELKRLGEWTLPNPLEGMRIFKEADREMSWL 178

Query: 175 TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T   +QQ         +  L    +  L +G R S++       L     +    K    
Sbjct: 179 TTSQIQQLLDACERYGKIYLTRIVKVCLATGARWSEAEGLTRSQLSPYKLTFFKTKGKKN 238

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            TV +P      L+            +  + +  T   +            ++ H +R  
Sbjct: 239 RTVPIPRWLHDELSELQGKMFQPCYQDFVKMLALTNIELI---------EGQNTHVLRHT 289

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G   + +   Y   A
Sbjct: 290 FASHFMMNGGNILVLQRILGHANIRETMRYAHFA 323


>gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum 5521]
 gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 364

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 101/359 (28%), Gaps = 35/359 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----- 66
            +++ +  + I  ++   G+  +           A   A       +  + + ++     
Sbjct: 9   YRQKDKGWQFIISYKDETGKWRQKSKQGFKNKKDAKPVAEKTMLELKASLKNSKQILSNN 68

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124
               T K L   +        +   +  S+            D     I    ++   + 
Sbjct: 69  YSNITFKELSDAFLDHKKLY-IKACTYTSYSQNLKVFKD-LNDKKIIDIKKVDVQKVFDV 126

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +K   ++   +  ++ +LFK+            ++++ PK+     +  TK ++   
Sbjct: 127 LLEKKSKYNTLKDYRGTLNLLFKFYKENYDPNYENNINIKLPKKDATLKKALTKSELDNV 186

Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNI 221
            SF+      G    +        GLR S+        +                     
Sbjct: 187 LSFFKLKPPTGQWQYITCLIAGTCGLRFSEIMGLKWNDIDSVNLTLTVERQYRQNLNGEW 246

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             I  +   +   + LP    + L      + T   N    K   T   +  ++    A 
Sbjct: 247 EFITPKSKNSTRIIPLPKSTYEELKKYRTEQPTDINNRIVTKNPRTAQYLLNRSLNKIAN 306

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRI 339
           +  S H +R    T+          +    G       + Y+    D +++      +I
Sbjct: 307 I--SLHELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVNDDMLKIASNKIAKI 363


>gi|110834925|ref|YP_693784.1| shufflon-specific DNA recombinase [Alcanivorax borkumensis SK2]
 gi|110648036|emb|CAL17512.1| rci [Alcanivorax borkumensis SK2]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 102/364 (28%), Gaps = 38/364 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  T+   
Sbjct: 6   KTPSGTWKAVIRKTGFPTTS-KTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMTVADA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y            S      +   +I+  G +    ++ + I    + R        
Sbjct: 65  LKRYLAEVSPTK-RPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLDRKD 123

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTK 176
                     +P++    L  +  +F  A+R+  +    NP  ++ RP       R   +
Sbjct: 124 AKGNPDPRPRSPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIRRPAPPPGRERRLNQ 183

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTI 232
            +  +  +     S P L +   L   +G+R ++        +      ++    K    
Sbjct: 184 TEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLETKNTAP 243

Query: 233 ITVELPDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
            TV L      +L                 F       +     F+  +      AG+  
Sbjct: 244 RTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKETAGMKE 303

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R  + +   + G +  ++ A  G K++   + YT               + S+ 
Sbjct: 304 LHFHDLRHEAVSRLVEGGLSDQQVAAISGHKSMQMLKRYTHL-----RAEDLVNELDSIA 358

Query: 344 DSDD 347
           D  +
Sbjct: 359 DRRN 362


>gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 422

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 99/304 (32%), Gaps = 30/304 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIR 120
           K   TL  LI  Y      G+LA  +  +F+   + +++         I       K I 
Sbjct: 105 KSTKTLVQLID-YHSEKIKGTLAKGTIRNFQITENYVLKFLKSNKLEDIFLSRLDYKFIC 163

Query: 121 SGV----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                          R  + ++ ++ +  +R + + A   E++  +P    +    +   
Sbjct: 164 DFESFLVQYYPKGHPRAMSHNTVMKHIQRLRKMIRLAYHLEWLDKDPFRRWKT-TFEKTD 222

Query: 171 IRPWTKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               ++ ++     ++       + R  F F  Y+G+  +D  +    ++       K  
Sbjct: 223 REFLSEHELSNLATYEFPLERLERVRDLFLFSCYTGISYADLNKLTPNNIWKGEDDKKWI 282

Query: 228 KTGT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            T        + V L    ++L+        T         +   + +++ K  A   G+
Sbjct: 283 VTNRQKTNTRVKVPLMPTALRLIEKYREHPLTEVSGTLFPPITNERANLYLKEIAEACGL 342

Query: 283 NK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            K  + H  R   AT      G     +    G   +   + Y +  D+     ++  ++
Sbjct: 343 TKNLTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKK--VEEDMNKL 400

Query: 340 SSVV 343
             V+
Sbjct: 401 QEVL 404


>gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 314

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRS 121
           K ++ ++  S      L   +   + S     I              F    + T  +  
Sbjct: 25  KQIVQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTR 84

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             E+     +  P++  + L +++  F+WA     +  +P   V+    +    R  T +
Sbjct: 85  YQEASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDK 144

Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +     +    G   + +     +L++GLR  + C      +Q    ++++ K      V
Sbjct: 145 EEDALIAAAEHGGSLRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREV 204

Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            L       L    +         F       +++        +    KA +   SAH +
Sbjct: 205 PLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDL 264

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R     + A      H L    G  + D    Y K 
Sbjct: 265 RHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKA 299


>gi|251772812|gb|EES53373.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 351

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 19/324 (5%)

Query: 14  ERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +R      ++  + +  G  +++    +      +   +  S  +  + ++   + TTLK
Sbjct: 6   KRNLSDSTVWEVKIRRKGYPVQMRSFDKREDGEKWAREIESSMDRGVFKSTKEGEKTTLK 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
             +  Y +           R                     I  K I      RK    +
Sbjct: 66  EALDRYLE--EVSKHKKGHRRERSRIEKWKAHSLSSRYLASIGPKDIADYASERKSEGFS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA-------INPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +    L  +  L+ +A  +  +               +  + +    R  T    ++ 
Sbjct: 124 MRTIHLELAIISHLYNYAAAKWGMRALENPVAPTRVKGTDPHRGQNYRGRERTLSLSEKE 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDG 240
           K F     + +      L +G+R  +     + ++      +K  +T       V L   
Sbjct: 184 KLFEHLNEEMKQIVTLALETGMRRGELISLTISNVDLTKKIVKLDETKNGDSREVPLSPA 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
            +  L      K+    +     M   + +  F   A +AG+ +   H +R  +AT    
Sbjct: 244 AVDTLKAVLGNKKIVGFDGKLWTMGPDRVTSVFANAAKEAGLKDIRFHDLRHTAATKL-- 301

Query: 300 AGA-TAHELMATYGWKTVDQAETY 322
           AG   AHEL    G K ++    Y
Sbjct: 302 AGIYQAHELAKILGHKVLNMVMRY 325


>gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 410

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 100/325 (30%), Gaps = 31/325 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR 104
              +  +   ++       +  +L  LI+ Y        L  ++   +   + Y  + + 
Sbjct: 87  KRKMLSAKAIKDLYLGEEAEVYSLSRLIT-YHNETSTTDLKWSTLRHYYVTQRYLVKFLE 145

Query: 105 ---KSGDFDYRKITTKHI-------RSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQE 151
               + D    ++  K +       R+        P +     + +  ++ +   A+  +
Sbjct: 146 DQHHASDIYLHQLDFKFVKDFEVYLRNHKPKDHQKPLNNNGVMKHIIRLKKMVNLALNLQ 205

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSD 208
           ++  +P  + +  K         +++++   +       +    R  F F  Y+GL   D
Sbjct: 206 WITNDPFATYK-LKILKVNREQLSEKELADMEKKKLSIERLDMVRDMFVFCCYTGLSYVD 264

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                  H+       +  +T        + V L    + +L        +         
Sbjct: 265 MINLTPGHIIAGSDGERWIRTCREKTLIPVNVPLLPQALTILDKYKDNIRSLSNGRVFPT 324

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAE 320
           ++  + + + K  A   G+ K  + H  R   AT      G     +    G   +   +
Sbjct: 325 VSNQKVNSYLKEIADLCGITKNVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQ 384

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            Y K  +R     ++   +   + S
Sbjct: 385 IYAKVVERK--LKEDMNALKLRIGS 407


>gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 408

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 106/396 (26%), Gaps = 71/396 (17%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   + ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYKLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRTHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  YV  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KTNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K             +                                   +L M
Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   ++  FIN+  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TNSNQDFLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              ++    G K V   E Y    A+     +    
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|257078096|ref|ZP_05572457.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256986126|gb|EEU73428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 111/355 (31%), Gaps = 41/355 (11%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G +    ++   GR         ST   A ++A        +  +    +     
Sbjct: 5   KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
                + +    G L+ ++        D   +       +++T +  +  +     T ++
Sbjct: 64  EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPGTKLKELTRQEYQKALNDYGETHAT 123

Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------TKEDMQQFK 183
           A   +  T MR   K A+ +  +  +P   V+   +K              +   + +  
Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRDPTYRVQAIGKKNPKHEELKYLNYQESIHLVHKIL 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                    R    F + +G R S+        +     ++K  KT              
Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275
             +   + + D  + LL    + ++ +++             N++ + ++ T  +   + 
Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              K G    + HG+R   A+I    G     +    G K +    +TY    D 
Sbjct: 304 FCRKIGTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 346

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 82/307 (26%), Gaps = 45/307 (14%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSG---------VESRKHT 129
                 + N+  S+    + +             +IT + I               R  +
Sbjct: 20  PDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVSEFLDYLETERNCS 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QF 182
            S+    L  +R  +K+A +++   I+    +++ K+  E                  Q 
Sbjct: 80  ISTRNHRLHCIRAFYKYAAQEDITVISHLEEIQKVKKAKEPETIVEHMSEDAVNAILKQP 139

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDG 240
            +F  +G +      FL  +G R  +     +  +Q       T         ++ L D 
Sbjct: 140 DTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTIHGKGAKTRSIPLRDD 199

Query: 241 FMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAK-------ATKAG 281
            ++ L                        +  K++M         +           +  
Sbjct: 200 VVQHLKQYLALFHPEEHLFSEQHLFYVTRSRMKKRMTEDNVRQLVRKYGKQAREICKEVP 259

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            N   H  R   A I    G     +    G   ++    Y      ++      + +  
Sbjct: 260 ENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKR-----KALEQ 314

Query: 342 VVDSDDP 348
            V  D P
Sbjct: 315 AVPDDSP 321


>gi|28199031|ref|NP_779345.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681754|ref|YP_001829914.1| integrase family protein [Xylella fastidiosa M23]
 gi|28057129|gb|AAO28994.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631864|gb|ACB92640.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580183|gb|ADN64152.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHTSVVMTEHYVRK 329


>gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 360

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 81/314 (25%), Gaps = 60/314 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP 130
            L++EY +     + +  +  ++        R  G  D     +TT+ +   +   + TP
Sbjct: 28  ALVNEYLRYLADRNYSPRTLRAYGYDLLAFCRWLGSVDVELSSVTTETVLDFMRHCRQTP 87

Query: 131 ---------------------SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168
                                ++    L ++  LF +   R   +        E  +   
Sbjct: 88  IAGRPTNVVSMTGTRLDRYSSTTINHRLAALTGLFTFRELRDPGLRTPIPSGREARRVSA 147

Query: 169 EGIRPWTKEDMQQFKSFWS------------------------EGSQPRLAFEFLLYSGL 204
           E         ++  +                               + R     +L SGL
Sbjct: 148 EERNGLLGHLVRPKRRSALRLREPRRLPRALNRRETAELLSSLRTWRDRALAGLMLLSGL 207

Query: 205 RCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKE 253
           R  +     V  +     +     K      V L      L+                  
Sbjct: 208 RSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYLLVERPESDSNRLFL 267

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYG 312
                +  Q + A      F+    K+G +    H +R    T  A+AG     + A  G
Sbjct: 268 VAKGPHRGQPLTAAGLRTIFRYHRIKSGVLAGHPHALRHTFGTAMAEAGVDLAVMQALLG 327

Query: 313 WKTVDQAETYTKGA 326
              +D    Y   A
Sbjct: 328 HAHIDTTARYIHLA 341


>gi|168261001|ref|ZP_02682974.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465660|ref|ZP_02699542.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195631733|gb|EDX50253.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205349738|gb|EDZ36369.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 387

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 113/380 (29%), Gaps = 59/380 (15%)

Query: 17  RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G+     +    G+RI+      +                + + +        T    
Sbjct: 5   RRGEIWYASYSTPGGKRIKESLGTSDKRLATELHDKRKAELWRVDRLGDF--PDVTFDDA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
              + +          S     S     +        + +T + I   V    +      
Sbjct: 63  CMRWLEEKAEKK----SLKDDRSRMAFWLAHFEGVRLKDVTEQKIYLAVNKMSNRKQLEI 118

Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                    S+  + L  M+ + + A  +++  +     ++ P 
Sbjct: 119 WKIKAAAAQKNGEPAPIYSAKPVTTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKVPA 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            + + +R   KE+ ++      E  +     +F L +GLR S+      Q +        
Sbjct: 178 VRNKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRRSNIINMEWQQIDMQRRVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269
            + +  K+   I V L D   K+L         +   + K+ +                 
Sbjct: 236 VNPEDSKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDD 295

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              + A   +AG+ +   H +R   A+    +G     L    GW++++    Y   A  
Sbjct: 296 QRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPN 355

Query: 329 IRLGIKNSRRISSVVDSDDP 348
                +++++I S+   D P
Sbjct: 356 H--LTEHAKQIDSIFSDDVP 373


>gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90]
          Length = 303

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 14/276 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 19  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 79  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242
                 +   A +   ++GLR  D  R    H+ +N   +     +      + L     
Sbjct: 139 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           AG +   +    GW+  +      +        I+ 
Sbjct: 257 AGLSERVIAEIMGWE-EETVRNIIRRYVSKTAAIEA 291


>gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601]
 gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601]
          Length = 314

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 93/267 (34%), Gaps = 18/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRS--GVESRK 127
           LI ++ +S    ++   +   +   F+ +    ++   D    +++ + +        + 
Sbjct: 26  LIEDFIRSRRLKNVRETTIKYYLDIFNVLNRDKVKVDLDKPLSELSQRDLEDIVMYWKKS 85

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182
              +S    + + +  + +   ++Y+ +NP       +++ E  +     +         
Sbjct: 86  LKVTSINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANEIKKIANYYK 145

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +       +  + F+ LL +GLR S++    V  + ++   +   K  T   V +     
Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVVVETKNLTQRIVYISKSMK 205

Query: 243 KLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
           + L            +  FI  D  K     F    +       + K  S H  R+  A 
Sbjct: 206 QKLNSYISIRGECNHQYLFIIQDGTKYTKYSFQESLRNAGRMCQLRKQVSPHVCRRTYAK 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
            +  +G  A  L +  G  +++  + Y
Sbjct: 266 NAILSGMDAFSLASLLGHSSLEVTKRY 292


>gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255]
          Length = 351

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 110/360 (30%), Gaps = 34/360 (9%)

Query: 5   LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            ++P +  K+  R       +YF   +G + +       T   A          +     
Sbjct: 2   SKIPAY--KDEQRK-SWYAGFYFTDFNGDKKKKIKRGFKTKKEAL------EFEREFLNK 52

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           S        + L+ EY +      L + +    +   + +I+         +IT KHIR 
Sbjct: 53  SKMSTDMNFESLVDEYMQDMSTR-LKLTTIDIKKYLINLKILPFFRKLKINEITAKHIRK 111

Query: 122 GVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +  S     T    +  +  +AV+   +  NP        +K      +   D
Sbjct: 112 WQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNADEMQFWTLD 171

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
             +    +    +PRLAFE L ++GLR  +      + +  N  +I              
Sbjct: 172 EFKKFMEFENKPEPRLAFEILFWAGLRLGELMALTPKDIFENKINIDKSYMKLNGEDIVS 231

Query: 231 ------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                 +   V +P      +            +    K   +            +G+ +
Sbjct: 232 SPKTPKSKRIVPIPSFLYNNIKDYLSKLYDLKEDERIFKFAKSYLHKELDRCCKLSGIKR 291

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
              H +R   A++  +       +    G +  +    TY+      +L  + ++++  +
Sbjct: 292 IRVHDLRHSHASLLVNMDVNILTIAERLGHEKAETTWNTYSHLYPNKQL--EVAQKLDDL 349


>gi|221232324|ref|YP_002511477.1| phage integrase [Streptococcus pneumoniae ATCC 700669]
 gi|8953580|emb|CAB96616.1| integrase [Streptococcus phage MM1]
 gi|73747016|gb|AAZ82412.1| integrase [Streptococcus phage MM1 1998]
 gi|220674785|emb|CAR69358.1| phage integrase [Streptococcus pneumoniae ATCC 700669]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131
           + + + KS    ++  +++ + +S   ++      D     +  + ++  +E    +   
Sbjct: 68  IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188
            +A +    +R +F +AV+  Y+  N       P++         K +      +     
Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186

Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
               R  +             +G+R  +     ++++      I+               
Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246

Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275
                  T+++ +  ++ +    +               F      Q      F    K 
Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
              +A + K  S+H  R    +  A++G     +M   G        E Y+   +     
Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361

Query: 333 IKNSRRISSVVDS 345
                ++ + +D+
Sbjct: 362 -DMEDKLVNKLDT 373


>gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 286

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 75/287 (26%), Gaps = 29/287 (10%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137
            H    A  +   +     Q+   +G     ++T +H+R         R     S     
Sbjct: 1   MHLTGKAKRTHDGYIRAVRQLSDFAGCSP-EQVTEQHVRQFFLHLKNDRNFAYGSLRVAF 59

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAF 196
           + ++  F    ++++  I         +  T      T E + +   S  ++        
Sbjct: 60  SGIKFFFTHTCKRDWEIIKMLK----LQNITTLPEVLTIEQVHELIGSATTQRMFVYFWT 115

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            + L   L  +   +      +     +   K      V LP   ++LL           
Sbjct: 116 VYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPC 175

Query: 257 INND----------------KQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISA 298
           +                      M+ T      K        G   S H +R   AT   
Sbjct: 176 LLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLL 235

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVD 344
           ++G     +    G  ++     Y    D       +   ++   + 
Sbjct: 236 ESGVGLKVIQRYLGHSSLQTTLVYLHLTDTAEANAREEIEKLFGRLP 282


>gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 405

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 116/390 (29%), Gaps = 72/390 (18%)

Query: 10  FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYM-----------SALTGS 54
           + T    + GK  +    Y +K   R+  L    +S                    L   
Sbjct: 2   YTTSYTRKKGKYYHVVFEYVKKKGTRKKSLSRTTKSEDKEVADSMLDDFVTECMRILNID 61

Query: 55  TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
              +    +            K  +    I  Y K     ++  ++   +ES     +I 
Sbjct: 62  KKYKPKNRNEIIFNKDINLYNKEISFCDFIYGYIK-MRRKTIEDDTYSGYESIARCSLIP 120

Query: 105 KS--GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                +   ++I    I          R  +P++ + +   + ++FK+A+R + ++INP 
Sbjct: 121 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIISINPL 180

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            SVE+PK+K      +  E++         E            Y GLR S+        +
Sbjct: 181 DSVEKPKKKKYVAEVYNAEEINILLDLLKREEESIYFGVLMAAYFGLRRSEVIGLKWSSI 240

Query: 218 QNNIFSIKTQKTGTI---------------------ITVELPDGFMKLL----------- 245
                +I    T                         +  LP    +LL           
Sbjct: 241 NFEENTITIMSTVKETNIDGKHILVCQDKTKSPAGLRSFSLPIEIKELLLKIKEKQEENK 300

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                      KE  ++++  +++     +  F     K  +     H +R   ATI  D
Sbjct: 301 KYLGKCYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILYD 360

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADR 328
             A   E+    G  +V      Y    +R
Sbjct: 361 NNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 390


>gi|71898993|ref|ZP_00681159.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71731239|gb|EAO33304.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 PFK-VSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELSVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 314

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 31/292 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              + +     ++    L  LI  + K       +++ + S  +  + I +  G+     
Sbjct: 2   EQARHKPWLGEKEDRRKLLELIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAAD 58

Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156
           IT K      + R                  T  +       +R +F    R  E+   N
Sbjct: 59  ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 118

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214
           P +++    +    +     + +            P L       L +G R ++  +   
Sbjct: 119 PLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKA 178

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             +  N  +    K     TV L +   + LA                     QF    +
Sbjct: 179 SQISPNKITFINTKGKKNRTVPLSEEMYQALAAHKGKAFAPC---------YKQFYRVIR 229

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               +  V +  H +R   A+    AG     L    G   +     Y+  A
Sbjct: 230 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281


>gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
 gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC
           27755]
          Length = 400

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 108/371 (29%), Gaps = 68/371 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +F  AV  EY+  NPC+ VE PK   +  R  T+E+ ++F +F S      +
Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHINV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216
              F + +G R  +      +                                       
Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +       +  +   I   E       +       +   F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K  V             K     + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTKGA 326
               + YT  +
Sbjct: 375 AMTTDLYTHVS 385


>gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
 gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium
           phaeobacteroides BS1]
          Length = 408

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 87/306 (28%), Gaps = 58/306 (18%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQF 136
           +      +  +  S++++  +          + +    ++  +      R+ + S+  Q 
Sbjct: 102 ALRLRHRSYRTEQSYKAWVRRFGAFLEHKSPQAVEQSDLQRFLSSLAVERRVSASTQNQA 161

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             ++  LF+  + ++   +   +   RP    +     ++E+++      +E +   L  
Sbjct: 162 FNALLFLFRHVLDKKVSGMEATVRSNRP---RKLPVVLSREEVRSILEIMNEVT--WLMA 216

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN------------------------------NIFSIKT 226
             +   GLR  +  +  ++ +                                ++  I+ 
Sbjct: 217 SLIYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKNLAEPLRNHLSEIRN 276

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------------MNATQF 269
                             LA         +                        M  T  
Sbjct: 277 IHEEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPVTNTIRRHHMYPTTV 336

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              FK    KAGV K  S H +R   AT   +AG     +    G   +     YT  A 
Sbjct: 337 QKAFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAK 396

Query: 328 RIRLGI 333
           +  LG+
Sbjct: 397 KNMLGV 402


>gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQ----IIRKSGDFD--YRKITTKHI 119
           + L   +R+            +A  +   +E+        +       D     ++ + I
Sbjct: 109 RTLFEVFREHNDKCAQLSGTDMAPATVQRYETSLKHTQDFVWETYHKKDILLGDVSRQFI 168

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  K       ++A ++L + + + + A+ + ++  +P   ++             
Sbjct: 169 EDYEFWLKTEKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFSEIKF-SLDKVEPDFLE 227

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+  S   +  +    R  F F  ++GL  SD      +H+  +    K  + G  
Sbjct: 228 DSEIQKLISKEIDIPRLGQVRDVFVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQ 287

Query: 233 ITVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T  + +       +K+L      +           +   + + + K  A   G+ K+  
Sbjct: 288 KTKIMCNIPLMEVPLKILGKYSTNEYCKSRGVLFPVLCNQKMNAYLKELADICGIKKTLT 347

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H  R   AT +   G +   +    G   V     Y +  DR
Sbjct: 348 THVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390


>gi|148990176|ref|ZP_01821407.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP6-BS73]
 gi|148993411|ref|ZP_01822928.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168488714|ref|ZP_02712913.1| integrase [Streptococcus pneumoniae SP195]
 gi|147924443|gb|EDK75532.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147927966|gb|EDK78986.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183572844|gb|EDT93372.1| integrase [Streptococcus pneumoniae SP195]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131
           + + + KS    ++  +++ + +S   ++      D     +  + ++  +E    +   
Sbjct: 68  IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188
            +A +    +R +F +AV+  Y+  N       P++         K +      +     
Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186

Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
               R  +             +G+R  +     ++++      I+               
Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFENNKIEITGNFDSVNKIKTLP 246

Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275
                  T+++ +  ++ +    +               F      Q      F    K 
Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
              +A + K  S+H  R    +  A++G     +M   G        E Y+   +     
Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361

Query: 333 IKNSRRISSVVDS 345
                ++ + +D+
Sbjct: 362 -DMEDKLVNKLDT 373


>gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33]
 gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33]
          Length = 311

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 76/286 (26%), Gaps = 52/286 (18%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVR 149
           +  ++  +    IR  G      + +  + + +    +    S      ++  L  +  +
Sbjct: 7   TEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGK 66

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                +     + RP+         T +++ +         + RL  + L  +G+R S+ 
Sbjct: 67  VLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEHRLFAQLLYGTGMRISEG 124

Query: 210 CRAGVQHLQNNIFSIKTQKTG----------------------TIITVE----------- 236
            +  V+ L  +  +I  ++                                         
Sbjct: 125 LQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGV 184

Query: 237 --------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                             +  + A      +       +  M    F   FK    +AG+
Sbjct: 185 ALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGI 244

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            K  + H +R   AT    +G     +    G   V     YT   
Sbjct: 245 TKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 290


>gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
 gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes F6900]
 gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria
           monocytogenes J2818]
          Length = 393

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 95/347 (27%), Gaps = 48/347 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G++IR         + A    L+         +    K       + ++R +     L 
Sbjct: 29  RGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELK 88

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
            N+   +  +  + II         KITT  +         +   PS+       +R LF
Sbjct: 89  GNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLF 148

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSG 203
           K+A        +  LSV++P  K      + + +++             ++  +  LY G
Sbjct: 149 KYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCG 208

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQ-----------------KTGTIITVELPDGFMKLLA 246
           LR  +      + +  N  +I                         I         ++  
Sbjct: 209 LRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKE 268

Query: 247 MTPIGKET---------------------FFINNDKQKMNATQFSIWFKAKATKAG---- 281
           +    ++                       F ++D         +  F     K      
Sbjct: 269 LAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDL 328

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              S H +R  +A+   + G     +    G   +     TY    +
Sbjct: 329 TKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITE 375


>gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
 gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum NCTC 2916]
          Length = 356

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/359 (9%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY---MSALTGSTPKREYINSPRKKP 68
            +++ +  + I  ++   G+  +       T           L       +         
Sbjct: 7   WRKKDKGWQFIISYKDSTGKWKQKSKQGFKTQKDGKPIIEKLLKDLNSNIKNNVDIHDSE 66

Query: 69  TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124
              K +   Y +    +      +   ++  F +      D   R +    ++  ++   
Sbjct: 67  KNFKEITEIYLEHIILYKEY--YTVKGYKDCFSKF-NALNDKKIRAMQRCDVQKIIDNFI 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 S+   +L  +   FK+       +   P  +++ PK K+   +    +      
Sbjct: 124 KEGLKQSTIETYLRRINTFFKYVRDDLNLIIELPTTNIKIPKEKSNTNKKALNKKELYNL 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               + ++  +       +G+R  +        +     ++   K   I           
Sbjct: 184 LENLKNNKFYIVAFIAANTGMRLGEILGLTWNDVDFKDNTVNVNKQWKILKNGKSGFGPV 243

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   + +       L        T   N        +  +         A +  S 
Sbjct: 244 KSKNSNRIIPISKNVKNELKNYKKNNPTDIYNRVAPFSTNSINNYLNSKLRELASI--SL 301

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R   AT+   +G     +    G         Y+   D         ++ ++++++
Sbjct: 302 HELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVND------DMMKKATNIIEN 354


>gi|126434804|ref|YP_001070495.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126234604|gb|ABN98004.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 388

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 97/371 (26%), Gaps = 49/371 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-----TLK 72
            G     F    GRR + P    +        +L  +   R+    P    T     T +
Sbjct: 16  GGHYRARFTGPDGRRYKAPTTFLTKGDARAWLSLQQADIIRKAWTPPEATRTVDRKLTFR 75

Query: 73  WLISEYRKSAHWGS--LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
              + +  +       L + +R  +     + I    G      IT   +R+        
Sbjct: 76  DYATVWLYNRRVKGEALKMRTREHYAWLLAEHIYPTFGAMPVGSITADDVRAWHNRMGKA 135

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TP++       +  +   AV     A++PC+       +             +  +    
Sbjct: 136 TPTARSHAYGLLNAIMNTAVADGKAALSPCVIRGAGTSRRVKKIRPATLAELEALTNAMP 195

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--- 245
                       +  LR  +      + ++ +    +  +   +   E      + +   
Sbjct: 196 APYQ-AMILLASWCALRFGELTELRRKDVELSTSVERDDQGQEVTVHEGLIHVERAVVRA 254

Query: 246 ----------------------------------AMTPIGKETFFINNDKQKMNATQFSI 271
                                              +   G    F       +       
Sbjct: 255 GDGYEVTTPKSDAGTRDVAIPPHLVPVIEAHLADHVGIWGDALLFPAKHGGHLAPATLYR 314

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F    T AG  +   H +R   A ++A  GAT  ELMA  G  T   A  Y   A  R 
Sbjct: 315 RFYTARTAAGRPDLRFHDLRHSGAVLAAQTGATLAELMARLGHSTPQAAMRYQHAAQGRD 374

Query: 330 RLGIKNSRRIS 340
           R       RI+
Sbjct: 375 RQIAAALSRIA 385


>gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++                  +             +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K  +        V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 79/283 (27%), Gaps = 36/283 (12%)

Query: 76  SEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE-- 124
             + K      +++  +  S+   F  +++                 ++   I + ++  
Sbjct: 14  EFFLKHLMTHRNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDSL 73

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              R +   S    L ++R  F+W               L++   +     I   ++ ++
Sbjct: 74  EKERNNAVRSRNARLAAVRSFFRWVAISRPDFAGLSTSILAIPTKRTDRRLICALSRPEI 133

Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232
                        G +       +  +G R S+        ++   ++ F     K    
Sbjct: 134 DAILGAPDLSTPCGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLHGKGRKE 193

Query: 233 ITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKAT--------K 279
             V L       L      +        F N   +++         K             
Sbjct: 194 RCVPLWAATADALTKWMREQNAVPTSLLFTNYRGEQLTRNGVDCILKKAIAGGVNSCPSL 253

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  + S H VR  +AT    AG     +    G +++D    Y
Sbjct: 254 SKKHISPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIY 296


>gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein
           [Streptococcus suis GZ1]
          Length = 432

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/401 (12%), Positives = 105/401 (26%), Gaps = 84/401 (20%)

Query: 11  VTKERTRHGKIIYYFRKGHGRR-------------IRLPYPHESTFIPAYMSALTGSTPK 57
           +     R  K     R G  +R              +  Y +  T               
Sbjct: 15  IMPRTKRKDKSRVVLRTGESQRADGTYHFSWTDANHKRRYVYAKTLDELRYKE-EQIAKD 73

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITT 116
           +        + TT+  +   ++       L  N+  +++  ++  +R   G      +  
Sbjct: 74  KSDGIKVEARYTTVNDIYELWKDLK--RGLKNNTFENYKYMYETFVRHQIGSKTVSSLRK 131

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRK 167
             I+       + R   P++     T +  +   AV  +Y+  NP  +      +    +
Sbjct: 132 TDIKRFYNYLADERHLKPATIDNIHTVLHQILDMAVDDDYIRNNPSNNVLKELKQSHCFQ 191

Query: 168 TEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL------- 217
           TE  R  TK + + F  +             F  ++ +GLR  +        +       
Sbjct: 192 TEKRRALTKPEQELFLDYLKNSPTSKYWYPVFAVMIGTGLRVGEVTGLRWCDIDLEEGII 251

Query: 218 --QNNIFSIKTQKTGTIITVE--------------------------LPDGFMKLLAMTP 249
              + +     +  G+                               +     +LL +  
Sbjct: 252 DVNHTLVYYDHRTEGSKRGCYFNVNTTKTPAGRRKVPMLGFVKEAFLMEKERQELLDLHC 311

Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVR 290
                   +  FIN   Q  +    +   +                      + S H +R
Sbjct: 312 EATVDGYTDFIFINRFGQPQHQATLNKAIRRIIRDCNDEQLLKDENAEVLLPHFSCHSLR 371

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               T   +AG     +  T G K +      YT     +R
Sbjct: 372 HTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKELR 412


>gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
 gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19]
          Length = 442

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 103/374 (27%), Gaps = 64/374 (17%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRL------PYPHESTFIPAYMSALT---GSTPKREYINSP 64
                G+ +Y  +   G+  R+        P          +A+    G+          
Sbjct: 37  RVYASGRKVYAVKYRLGKAQRIFTIGTHGSPWTPEKAREKATAVLKDVGNNIDPAAEKLA 96

Query: 65  RKKPTTLKWLISEYRKS---AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +   T+  L+ EY +          AV+           II   G     ++T +    
Sbjct: 97  DRHAMTVADLVKEYIERGPQTKANKRAVSWAADESCLRRHIIPTVGKDAADRLTNEGAAK 156

Query: 122 GVESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            + + +   ++                    A +  +    +F W ++   V  NP   +
Sbjct: 157 AIYAIRMGKTAVVEKSDKPRGKAVVTGGEAVARRTRSVAAAMFAWGIKHGLVKRNPFTGI 216

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL---AFEFLLYSGLRCSDSCRAGV 214
           + P       R  ++ +   F        +EGS  R+   A   LL +G R S+      
Sbjct: 217 DLPAA-PVKERFLSQAEAGAFLDALAGLEAEGSVDRVYGDALRLLLLTGARKSEIANLTW 275

Query: 215 QHLQNNIFSIKTQKTGT-------IITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262
             +  +   +      T          + L    +++L+     +  +   + K      
Sbjct: 276 SEVDFDRRCLVLPPERTKAGGKTGERRIMLMPAALEILSRRYKARSDYVGIDGKPLDLPL 335

Query: 263 -KMNAT----------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
              +                 F      A +     H +R   A+ +   GA+   +   
Sbjct: 336 VFPSPRTLNTTGGPIVGLRRIFAKACLAADIKGVRLHDMRHSFASFAVAGGASLFLVSKL 395

Query: 311 YGWKTVDQAETYTK 324
            G       E Y  
Sbjct: 396 LGHSNSRTTERYAH 409


>gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236]
 gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236]
          Length = 284

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 15/273 (5%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              ++  +  +     L  L+  +    H  +L   +    + +  + +   GD    ++
Sbjct: 3   NANKKEWSDKQLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKVVSQL 59

Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T + +      R     + ++  + L  +  +F   ++ E  +         P  +    
Sbjct: 60  TKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPQHGLPPLAEKNPG 119

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +   +          G   RL     L +G R  +        + NN  +    K G 
Sbjct: 120 MTFLDTEEINRLLAVLSG-DERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             T+ +     +        +     +    K++  +F    +         ++ H +R 
Sbjct: 179 KRTIPISAELQE--------EVKTNASGKLFKVDYGKFCETLRMVKPDLPRGQATHVLRH 230

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+     G     L    G   + Q   Y  
Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263


>gi|220927371|ref|YP_002502673.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219951978|gb|ACL62370.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 425

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 101/346 (29%), Gaps = 46/346 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPA--------YMSALTGSTPKREYINSPRKKPT-TLKWLIS 76
           R   G+R+++          A          +        R    +P  +PT T+   + 
Sbjct: 54  RLPDGKRVQVRLGRADDVAQADGSTVLTHEQAKEATRAWVRSLQAAPDAQPTLTVADALE 113

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            Y ++     +      +       I+ K G      +T   +R   ++  H P      
Sbjct: 114 RYLEARTAEGMKAV-YDARSRARTHILPKLGATRVSDLTLDKLRRWRDAMVHAPKRVRTG 172

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +A + LT ++    WA + +    +    + +P R 
Sbjct: 173 KLAKQVNTRPVDLSDPEALRRRRDTANRTLTLLKAALNWAYQHQLADNDRAWRLLKPFRD 232

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           T   R    +  +Q +   +     R      L +G R  +  R  V+       ++  +
Sbjct: 233 TGSARVRFLDAAEQQRLLNTCDGALRDLVATALMTGARFGELSRLMVRDFDRANGTVFIE 292

Query: 228 KTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           ++       +P         + L+     K    I  + +      +   FK    +A +
Sbjct: 293 RSKNGRARHVPLTPGGVALFERLSAGRAPKALLLIRENGEGWGPATYQRSFKTALDRAKL 352

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
              + H +R   A+     GA    +    G      AE  Y   A
Sbjct: 353 ESITLHELRHSYASAMVRNGAPLIVVAEALGHSGTRMAEKHYAHLA 398


>gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
 gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 41/306 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           LK     Y        ++ ++  S+ + F  +     D           + ++ + I   
Sbjct: 14  LKDFFETYL--PKERGVSSHTIRSYSATFQSLYAFFKDNKGIRANKLFVKDLSRRSINDY 71

Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   +        +    L S++    +A  +++  I     +   K K   +   +   
Sbjct: 72  LNWLEMKKGNKVPARNSRLASVKAFCHYAQYKDFKNIARWQEILSIKSKKSDMPCISFLT 131

Query: 179 MQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKT 229
            +  K+          +G +      FL  +G R ++       +L            K 
Sbjct: 132 QEGMKTLLSEVPTDTIQGRRHLAILAFLYDTGARANELISFSAHNLNLTKPYHVVLSGKG 191

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280
                V + +  + +L            N  KQ +          +   +      A K 
Sbjct: 192 RKKRIVPIHEKLVLILKAYMKDTNIEPDNISKQPLFVNIHGRRLTSAGLTHIIMMYADKV 251

Query: 281 GVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331
                       S H  R   AT    AG     +    G  +V   ETY +  +++ R 
Sbjct: 252 REKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQKRK 311

Query: 332 GIKNSR 337
            ++ + 
Sbjct: 312 ALEAAA 317


>gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23]
 gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family
           [Prevotella ruminicola 23]
          Length = 381

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 12/258 (4%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAI 134
           RK     +LA NS    +     +           +T  ++R+     +     T  +  
Sbjct: 114 RKHMEQENLAQNSIKDIKVVLKSVEESGLLNTLADLTPANVRAYDAWLRKPNTRTDYTIN 173

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--SQP 192
            +   +R   K   +QE ++I+P   V+ PK   +   P T+ ++ + +     G   + 
Sbjct: 174 GYHKKVRKYTKILWQQEIISIDPYDHVKFPKGTNKERHPLTENEIIKIRDAEFYGRKDRA 233

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R  F F+ Y+GL   D C    +                       + F  +L       
Sbjct: 234 RDLFVFMAYTGLAYCDMCLFNFKT--MTELHDDYYYIDGARLKTGSNFFTPILPPALAVL 291

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
           E +         +  + + +         +    + H  R   AT+    G    ++   
Sbjct: 292 EKYDFKLPII--SNQKLNDYLHLIQDTLDIRNEVTCHIGRHSFATLMLTYGIPIEKVKRM 349

Query: 311 YGWKTVDQAETYTKGADR 328
            G K +   + Y K   +
Sbjct: 350 LGHKNIATTQIYAKILKK 367


>gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 378

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/371 (10%), Positives = 106/371 (28%), Gaps = 43/371 (11%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + + +   G+ +    K  G+   L               +       E   + R    
Sbjct: 7   NIYERKD--GRWVCRVLKPDGKHRYLYGQSYDEVQNKKEKLMKAFLSLPETSPNSRHP-- 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR--KITTKHIRSGV--- 123
            L  L+ ++        +   +  S+       +I      +     I+  HI+  +   
Sbjct: 63  -LSCLLKKWLNDDVRERVKPTTYDSYYYCMATYVIPFFDSLEIGGGAISEGHIKYFISYI 121

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             ++  + +   + L+  +   K   +      +   +   PK K+  +  ++ ++ +  
Sbjct: 122 SRNQHLSETYKRKVLSIFKTALKKIFKNAENYRSIMEAFHLPKSKSVPVAVFSMKEQRLI 181

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNI 221
           ++     +  R +      Y+G+R  + C    + +                      + 
Sbjct: 182 EAEIMRDNDIRSVGILLCFYTGIRLGELCALSWKDVDLDAKTLLINGTVSRIKKKNTQHG 241

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFK 274
            +  +  T    +          L             ++++  +N K   +   +   +K
Sbjct: 242 KTQLSITTPKSRSSMRKIPIPNFLIQKMRSLESSQSKEDSYIFSNKKGPTDPRTYQRVYK 301

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRL 331
               KA +  +  H +R   AT + +       L    G  +V     TY     ++  +
Sbjct: 302 RLLDKAKITPRKFHAIRHTFATRALEMSVDIKTLSELLGHSSVTVTLNTYAHSLMEQKII 361

Query: 332 GIKNSRRISSV 342
            I         
Sbjct: 362 AIDKMNSFYEK 372


>gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 314

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 79/292 (27%), Gaps = 31/292 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              + +     +     L  LI  +         +++ +    +  + I +  G+     
Sbjct: 2   EQARHKPWLGEKDDRRKLLELIDLWY---QLHGCSLSDKKGRLAKLEIICKGLGNPIAAD 58

Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156
           IT K      + R                  T  +       +R +F    R  E+   N
Sbjct: 59  ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 118

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214
           P +++    +    +     + +            P L       L +G R ++  +   
Sbjct: 119 PLMNIREFDQPEREMAWLNDDQIDSLLDACDLHGNPELTLIVRLCLSTGARWNEIAKIKA 178

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             +  N  +    K     TV L +   + LA                     QF    +
Sbjct: 179 SQISPNKITFINTKGKKNRTVPLSEDIYQALAARKGKPFEPC---------YKQFYRVIR 229

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               +  V +  H +R   A+    AG     L    G   +     Y+  A
Sbjct: 230 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 281


>gi|298292615|ref|YP_003694554.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929126|gb|ADH89935.1| integrase family protein [Starkeya novella DSM 506]
          Length = 458

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 95/317 (29%), Gaps = 38/317 (11%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A  +A   +   +   ++      T+  ++  Y ++     +  +   +       I  
Sbjct: 84  QAKDAARAWAKSIKAGSDAS--PALTVDAILDRYFEARAAEGMK-SIYDAKSRAGLHIRP 140

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPS-----------------------------SAIQ 135
           K G     ++T   IR   ++    P                              +A +
Sbjct: 141 KLGKLRISELTVDKIRRWRDAMAAAPRKVRTGKHAAKPNLRPVDPNDPEATRRRRDTANR 200

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            LT+++    WA  Q  V  +    + +P R T   R     D +Q +   +     R  
Sbjct: 201 TLTTLKAALNWARDQRLVDDDTAWRLVKPYRGTTAARVRFLSDGEQQQLLDNAEGDVRNL 260

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIG 251
               L +G R  +  R  V+     N    I   K+G    V L  G   L  L      
Sbjct: 261 IAAALLTGARFGELARLLVRDFDAANGSIFIAESKSGKARHVPLTTGGRALFSLLAGGRS 320

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
                +  + +      +   F A    AG+ + + H +R   A+    AGA    +   
Sbjct: 321 GSAPMLTRNDEAWRPATYQRAFHAALEAAGLSDITLHELRHSYASTMVRAGAPLMVVARA 380

Query: 311 YGWKTVDQAE-TYTKGA 326
            G       E  Y   A
Sbjct: 381 LGHADTRMVEKHYAHLA 397


>gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 441

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/399 (12%), Positives = 112/399 (28%), Gaps = 80/399 (20%)

Query: 4   SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG--------- 53
              LP  ++  ++     +++ F+   G+R R     +     +Y +             
Sbjct: 2   KASLPFKYIIADKKGKNYVVFDFKDDSGKRKRKWVTTDLPADCSYKALTAKVNVIVAKFY 61

Query: 54  ----STPKREYINSPRKKPTT------------------LKWLISEYRKSAHWGSLAVNS 91
               +    +   +P++K  T                      +  + ++     LA  S
Sbjct: 62  EEFLTGRLTKVKEAPKEKEKTELSEEILSDDAECKTGFEFTAFLDYWLETIKPT-LARTS 120

Query: 92  RISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
             S+  Y  +I               +T   ++     + ++    +S   +  ++    
Sbjct: 121 HQSYTRYITRIKNYFDERYPHLLLGNLTALQLQQFYNDKYNSGLSGNSVKHYHANIHKAL 180

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           K+AV+ + + IN    VE PK +      +  +D  +      +G +  L      Y GL
Sbjct: 181 KYAVKMDMLDINVADKVELPKIQKFEA-NFYNKDELEQLFEVFKGDRLELVVHIAAYYGL 239

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------ITVELPDGFMK 243
           R S+        +      +  ++  +                       T  L     +
Sbjct: 240 RKSEIIGLKWDSVNFEEKKLTVRRKVSSTYGSGKEMIFVENQLKTESSVRTFPLIPHIEQ 299

Query: 244 LL----------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           +L                            +N  + +     +  FK    K  +     
Sbjct: 300 MLIERKTLEEYYSKLLGKDFDREYDGFVCRDNFGKLITPNFVTSHFKYIIQKNKLKHIRF 359

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
           H +R   A++    G +   +    G  T +     Y+ 
Sbjct: 360 HDLRHSCASLLLANGVSMKAIQEWLGHSTFNVTANFYSH 398


>gi|289165155|ref|YP_003455293.1| phage integrase [Legionella longbeachae NSW150]
 gi|288858328|emb|CBJ12196.1| putative phage integrase [Legionella longbeachae NSW150]
          Length = 333

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 97/334 (29%), Gaps = 18/334 (5%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R         +   R  +            Y             +    K   + +  +
Sbjct: 5   KRKNIWWISISQNGQRIQQSTGTTSKIAAQEYHDKFKA--ELWSQVKLESKCIYSWQDAV 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSS 132
             + K          S      +   +      F   +IT   +       E    TP++
Sbjct: 63  VRWLKENEHK----RSLKDDIMHLRWLDPYLRGFQLHEITRDILEEVAIKKEDTGVTPTT 118

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  +R + +   + E+  ++    V     + + IR  T  +  +  +     S  
Sbjct: 119 INRMLEVVRAILR-KAQMEWEWLDKVPVVRMRHVEKQRIRWLTIGEANRLLN--ELPSHL 175

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +   +F L +GLR S+           ++ + +    Q           +     +    
Sbjct: 176 KDMADFSLSTGLRASNVTGLRWSDVDLIKRHAWIHPDQAKANKAIPVPLNAHALAILKRR 235

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
            G  T ++   + K      +  ++    +AG++    H +R   A+     G +  EL 
Sbjct: 236 RGIHTDYVFTYQDKQIRQCNTKAWRKALDRAGIDNFRWHDLRHTWASWHVQNGTSLQELQ 295

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              GW + +    Y   +         + RIS +
Sbjct: 296 QLGGWSSFEMVLRYAHLSGEH--LRDAANRISGL 327


>gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 72/302 (23%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R        ++ +  ++  +  + I   G    +++    +   +         S
Sbjct: 8   LLDQVRDQLRVKHYSIRTEQAYVDWIKRFILFHGKRHPQEMGAPELEVFLTDLAVRGGVS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  +         + +    +V R KR        T  +++            
Sbjct: 68  ASTQNQALSAVLFLYREVLKIDLPWLDNVIRAKRPQRLPVVLTPVEVRAVLERM--DGVY 125

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL----- 245
            L    L  +G+R  +  R  V+ +      I  +  K G      LP      L     
Sbjct: 126 ALMGRLLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVTMLPSTVAATLADHLQ 185

Query: 246 -------------------------------AMTPIGKETFFINNDKQKMNATQ------ 268
                                                      +      +         
Sbjct: 186 RRRVIFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTDPRSGRVRRHHID 245

Query: 269 ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K   T A + K  + H +R   AT   + G     +    G   V     YT
Sbjct: 246 EKLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYT 305

Query: 324 KG 325
             
Sbjct: 306 HV 307


>gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 373

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 105/360 (29%), Gaps = 32/360 (8%)

Query: 11  VTKERTRHGKIIYYF-----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +  +    GK  Y F                 RI L   +           +        
Sbjct: 21  IYLDIYYKGKRYYEFLKLYLTPERFPEDRDKNRITLRLANSIKA----QRIIDLQNEIYG 76

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     TL   +SE             S     S  + +         + I T  +
Sbjct: 77  VRMINGLGKKTLLEFLSELSTDKSAHGDKAYSLR-LRSLANHLRDYMPQCLLKDIDTGFV 135

Query: 120 RSGVESRKHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGI 171
           +  +   +  P      +   +   + V    AV++  +  NPC    + E+P + T   
Sbjct: 136 KGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVKKGLILSNPCSLLDTDEKPHKPTSLR 195

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T E++++         + + AF F  + GLR SD      + +Q         +   
Sbjct: 196 TYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRISDLTALRWEDMQKEGNDKFRLQIIQ 255

Query: 232 IITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
             T E     +    +  +     E   +       + T      K     AG+     +
Sbjct: 256 RKTKEAIYLPLSEEAIKYLPARENENDRLGLIFHLPSLTIICQVLKGWTLAAGIKNKKVT 315

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            H  R   AT+S   G   + +    G K +   + Y K  D  +   +   R + V+D+
Sbjct: 316 FHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR--QAIDRFNGVLDA 373


>gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3]
          Length = 423

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%)

Query: 64  PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114
            ++   TL  L  ++ +        S++  +   ++    +      D          ++
Sbjct: 112 KKQDIDTLMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRSDLKLTEL 171

Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T   I       +      P++A + + + + +     +   +  +P ++      +   
Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRF-HLEPVN 230

Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               T E++ Q  +      +    R  F F  ++GL   D       ++          
Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290

Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                 +VE     + +    ++    +T+        ++  + + + K  A   G+ K 
Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            + H  R   AT+S   G     +    G   +   + Y +  ++       + + ++  
Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410


>gi|210610924|ref|ZP_03288649.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787]
 gi|210152224|gb|EEA83231.1| hypothetical protein CLONEX_00839 [Clostridium nexile DSM 1787]
          Length = 361

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 97/339 (28%), Gaps = 41/339 (12%)

Query: 18  HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G       YY   G   R              +                      T + 
Sbjct: 9   RGTWYVSFHYYDWTGKNCRKVKRGFKTKREATEWERHFRMKEAAEL--------DMTFED 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES------- 125
            +  Y +      L  N+ ++ E     +++    D   R I  K I             
Sbjct: 61  FVKAYTRDMKPK-LKHNTWLTKEHILRTKLLPYFKDKKMRDIRPKDIIQWQNEQISYRDE 119

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182
             + + P+      + +  LF  AVR   +  NP +      +   E +  WTKE+  +F
Sbjct: 120 KGKPYAPTYLKTLQSELSALFNHAVRFYELKSNPVVKAGSLGKGKAEEMLFWTKEEYLKF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +      AF+ L + GLR  +      Q +  +   I+  K+             
Sbjct: 180 IEAIKDKPYSYHAFQILYWCGLRVGELLALTSQDIDFDNKVIRITKSYQRLEGEDVITDP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                   V +PD   + L             +    +  +         A KAGV +  
Sbjct: 240 KTPKSKRNVSMPDFLCEELKDYIGRLYGILPTDRIFHLTKSFLHHEMTRGAEKAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R    ++    G +A  +    G ++VD    Y  
Sbjct: 300 IHDLRHSHVSLLISMGFSAVSIGNRVGHESVDITYRYAH 338


>gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 403

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 109/345 (31%), Gaps = 44/345 (12%)

Query: 19  GKI-IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK+  +  R        R           AY++ LT    + EY++ PRK   T   +  
Sbjct: 34  GKVSRWRVRWVDATGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGTVAE 92

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR------KHT 129
           ++  +         +   + S  D + + K  D   +++  +   + + +       +  
Sbjct: 93  QWFTTKQHR--KPKTVAGYRSLLDTVVLPKWEDVPLKRLDYESYSTWLGALSVDGGQRGA 150

Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182
             SA +       +  + K+A R   VA N  L ++R    P++     R  +  ++   
Sbjct: 151 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVALEIKRDEDLPEQAERERRYLSHAEL--- 207

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------- 225
                   +       L Y GLR  ++     +H+ + + +++                 
Sbjct: 208 LMLAKAADRFETLTLVLGYCGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTTK 267

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
             +     +   +       L   P              +    +   F     + G+  
Sbjct: 268 TKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGE--YRWAFDNACAEVGIEG 325

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              HG+R  +A+++  AGA    +    G  T     + Y    +
Sbjct: 326 LVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLN 370


>gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 409

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 21/334 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSA 82
           Y R    +  R       T               ++      K+  T        Y    
Sbjct: 59  YDRLKELKENRKTGEGPQTLAEKRAIEDKRKDADKQARQLAEKENVTFGRFMAETYLPQC 118

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLT 138
                   +    E+ +   +    G+  + KI   H+      +  +K    +    L 
Sbjct: 119 K-RDKKPTTYAMEEALYRVHLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQ 177

Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAF 196
             R +F  A ++  Y   NP  +V+ PK     +R  + ++ ++     +  S       
Sbjct: 178 VTRQVFNMARKRGVYTGENPTSAVKWPKLDNMKMRYLSIDEAEKLFDALAAKSHNLHDMA 237

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
              L+SGLR  +  +     +     +           T  L      +L     G    
Sbjct: 238 LLSLHSGLRFGEIAKLTWSCVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNE 297

Query: 256 FINNDKQK--MNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATA 304
            I   +     +  + S  F     + G+           + H +R   AT   ++    
Sbjct: 298 LIFQKRSGLDGSIARASKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDL 357

Query: 305 HELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           +    + G  T    + Y K   +R+R G     
Sbjct: 358 YLTQKSLGHTTSTMTQRYAKMTENRLREGSAALE 391


>gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 412

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 107/314 (34%), Gaps = 31/314 (9%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQI 102
            +   L  +   +  +    ++ TTL WL++ Y  +     L   +  ++   E Y  + 
Sbjct: 85  RFNKELVNAEAIKAKVEGIDEEQTTLLWLMN-YHNTEIKKLLEDGTMKNYFTTERYVKEF 143

Query: 103 I---RKSGDFDYRKITTKHIRSG----------VESRKHTPSSAIQFLTSMRVLFKWAVR 149
           +   +K  D    ++  K +                R    ++ ++ +  +R +   AV+
Sbjct: 144 LLKKKKRHDIYLSQLDYKFVVDFEIYLRQREPDKNQRPCANNTVMKHIERLRKMINIAVK 203

Query: 150 QEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCS 207
            E++  +P L  ER     +       + +  +      +G +  R  F F  Y+GL  +
Sbjct: 204 NEWLIKDPFLRFERKIVNKDREALELEEIENIKGVKLDKDGQRIVRDVFIFSCYTGLSFA 263

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DGFMKLLAMTPIGKETFFIN 258
           D C     HL  +I   K  +     T                ++L+          +  
Sbjct: 264 DMCLLNNNHLVTDIEGEKWIEMIRHKTANFSGKKFFVLLLPEAIELINRYRNHPMAGYTK 323

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKT 315
                 +    + + KA A +A V+K  + H  R   AT    + G     +    G  +
Sbjct: 324 TIFPVFSNQATNRYLKAIAKEAKVDKKLTFHIARHTFATTITLENGVPMETVSGMLGHAS 383

Query: 316 VDQAETYTKGADRI 329
           +   + Y+K   + 
Sbjct: 384 LRTTQIYSKIKKKK 397


>gi|309702146|emb|CBJ01461.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 376

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 76/271 (28%), Gaps = 12/271 (4%)

Query: 63  SPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           + + +  T++  I   +         +   +         +    G    R IT   +  
Sbjct: 86  AVQSRRFTVEQAINDLWLPDLQLYKKSP--QSELSKLNLYVRPFWGKRQLRDITAGELEQ 143

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +    PS+  + L  +  +   AVR  ++  +P   V   K      R  +  ++
Sbjct: 144 YAAGLREKLRPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEI 203

Query: 180 QQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +F    +   +    +    LY+G+R  + C    ++   ++  +    T +      P
Sbjct: 204 PRFIDAATALQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCP 263

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKF 292
                +  +               ++             F      A ++    H +R+ 
Sbjct: 264 LAPPAIAVVQCQQDLMLSKTYIFPRLTDNARPLAYPRATFARICRDADIDNLRMHDLRRT 323

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT    A              ++     Y 
Sbjct: 324 FATRVLQATGDIAIASHLLNHHSLTATRRYA 354


>gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 363

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 94/339 (27%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+R+R           A+          + ++   +    +L
Sbjct: 4   RKLASGKWLCECYPLGREGKRVR-KQFATKGEALAFERFTMEEIENKPWLG-EKADNRSL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           + +I  +       SL   +    +      D I    G+   R+++        E R  
Sbjct: 62  REIIDLWF------SLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLA 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                          P +      ++  +F    +   + A NP   +   K   + +  
Sbjct: 116 GQMTDASGIPLAVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               ++++     +E + P L    +  L +G R S++     Q +     +    K   
Sbjct: 176 LAPNEIKRVLDACAESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTRTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAH 287
             TV +       +        +                  F+    + G+     +  H
Sbjct: 236 NRTVPISRELYDEIPRKSGKLFSPC-------------RKAFERAINRTGIQLPDGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321


>gi|239930698|ref|ZP_04687651.1| integrase [Streptomyces ghanaensis ATCC 14672]
 gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaensis ATCC 14672]
 gi|166078058|gb|ABY81078.1| Int1 [Streptomyces ghanaensis]
 gi|291341957|gb|EFE68913.1| integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 376

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 104/355 (29%), Gaps = 36/355 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLIS 76
            G+    +R     ++R      +T   A ++     +   R   + P           +
Sbjct: 19  SGRWQVRYRDPETGQLRPAEKTYATKTDAQVALTHIESDIVRGQWSDPDAGAVNFGEYAT 78

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---S 132
            + +      LA  +R   ES     I+   G      +TT  +R              +
Sbjct: 79  AWLRD---RKLADRTRERNESVMRLHILPTFGAGSVADVTTARVRGWRGKLLAAGVGEPT 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            ++    +R L   AV  E +  NPC      +         T  ++       S   + 
Sbjct: 136 VVKAYQLLRALMNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEVFA--VADSIAPRY 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITV 235
           RL      ++ LR  +      + +     ++  ++                      +V
Sbjct: 194 RLLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDGRLFDKAPKSAAGVRSV 253

Query: 236 ELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             P   +  +A               F+     ++  + F   +      AGV      H
Sbjct: 254 SFPAELLDAVAHHLEHFAAPGRDGHVFVGPQGGQLRRSNFRDDWVKAREAAGVTAELHFH 313

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
            +R    T+++ AGA+  ELM   G  +   A  Y    +DR R        +  
Sbjct: 314 DLRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDRTIADRLGAMIR 368


>gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R]
          Length = 330

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 83/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L++ +  +      +  +   + +  ++++          ITT  IR    +  E  +
Sbjct: 53  EHLLNSFISAKKIEGCSEKTLTYYRNTIERLLVSL-SLAICHITTTDIRTYLSNYQEEHQ 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+A +P   + + K  +      + E ++Q      
Sbjct: 112 SSKVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQ-LRDSC 170

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
              +     +FL  +G+R  +  +   + +  +               V         L 
Sbjct: 171 TTKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNARTKLHLQ 230

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+           ++   ++  +   +  +       + K   H  R+  AT++ D
Sbjct: 231 QYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPIEQVQRLLGHVRIDTTLHYA 314


>gi|170025347|ref|YP_001721852.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169751881|gb|ACA69399.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 384

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 103/378 (27%), Gaps = 56/378 (14%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R+ K    F + +G R+R      +    A                       T    
Sbjct: 4   KQRYSKWYCDFVRPNGERVRRCL-GTADKKQAQELFDQLKAEAWRVDKLGEIAEHTFDET 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
              +            S     +  +             IT   I   V    +      
Sbjct: 63  CLRWLTEKEHK----RSLDDDRTKIEFFRGHFSGMPISSITEDKIMKAVSRMPNRKHRQI 118

Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                    ++  Q L+ +R L + A  +    +     ++  K
Sbjct: 119 WESKRDAALMKKKPIPSYVEKQVSQATRSQHLSFIRSLLRAAADEWK-WLAKAPVIKTRK 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +++ IR  TK++     +   E  +P     F L +GLR S+        +        
Sbjct: 178 PQSKRIRWLTKDEAVTLINCMPENFRP--VVVFALATGLRRSNILDLEWSQIDMQRKVAW 235

Query: 226 TQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                      I V L D   K+L         +   +      A               
Sbjct: 236 IHPENAKAGKAIGVALNDMSCKVLREQIGRSSRYVFVHTSAWHRADGTKTAEVRKMRVDD 295

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  ++    ++G+ +   H +R   A+    AG     L    GW++++    Y   +  
Sbjct: 296 NTAWRTGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRYAHLSPN 355

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++R+I  V+  +
Sbjct: 356 H--LTEHARKIDEVMGIN 371


>gi|294625939|ref|ZP_06704551.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599734|gb|EFF43859.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 399

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 97/354 (27%), Gaps = 25/354 (7%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P    + T  G+      Y    G  R+  L    E T   A + A       R   +  
Sbjct: 29  PGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVEQARVMAQEWLAEVRRGGDPS 88

Query: 65  RKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
             K       T+K     + +         +++  ++   D+ II   G    + +    
Sbjct: 89  AAKAAARKAQTMKEYCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPILGRMKVQDVKWPD 148

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + + ++   H P+ A +    +R +F  A                P            +D
Sbjct: 149 VAALMKKLAHKPAEANRAFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDD 208

Query: 179 MQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    E  +          LA         R S+ C      +      +    + 
Sbjct: 209 ELVRIFRQLEKLEAEGLESYVIPLAIRLQFEFAARRSEICPLEWDWVDLEKRRVVWPDSK 268

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
           T    +        L                 N+    +   +    +K     AGV   
Sbjct: 269 TGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPNPHLTHGEHYGGWKRMLKVAGVPHV 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             HG+R  S T  A++G      MA  G KTV     Y    D+ +R   +   
Sbjct: 329 GTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTEDKPVRDAAELVA 382


>gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 28/290 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWG---SLAVN-SRISFESYFDQIIRK------SGDFDYRKI 114
                T      ++           L VN +R  +++    +           D  +  +
Sbjct: 107 ESGEMTFFKFYEQFLSDYEKKVNSGLRVNGTRSKYKTLLRHLRNFVLTKYGYSDVSFNDL 166

Query: 115 TTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T + ++       + +  T ++   ++     L + A+ ++++A NP    +  K+  + 
Sbjct: 167 TPEFVQDFDYYLRDDQSLTHNTIWLYMIGFTTLCRLAMSRKHLAFNPFSEYKNTKKDKDR 226

Query: 171 IRPWTKEDMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 E  Q   F     +    +  F F  ++GL  SD       ++Q+   S +   
Sbjct: 227 GYLLRNELEQLVTFNCEKKKDELVKDLFVFSCFTGLSYSDMKGLRNSNIQDFFDSNQWII 286

Query: 229 TGTIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK 279
                T    +  +  +    I K              +N     +  + S   +    K
Sbjct: 287 IRRKKTATSSNVMLLDIPKMIIEKYAGFSKDGKVFPVPSNTVCNDSLKRISQQIECLKEK 346

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                + H  R   AT+    G     L    G K +   + Y K  +  
Sbjct: 347 ---KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEK 393


>gi|223934444|ref|ZP_03626365.1| integrase family protein [bacterium Ellin514]
 gi|223896907|gb|EEF63347.1| integrase family protein [bacterium Ellin514]
          Length = 341

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 15/298 (5%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                ++A  G   +         +  TL+  + +Y++       +  + ++   Y    
Sbjct: 43  LKDLELAARAGRLTQEAIGYLISGRKLTLQKALEDYQEWMETRGKSPRTIMNNVHYIRSW 102

Query: 103 --IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               +        IT KHI   + +R  +   +S    L ++R  F +   + +   +P 
Sbjct: 103 ITAAQVEALPPAAITEKHISDWINNRESQTKANSRTIMLAAIRSFFFFIAGKGWTPNDPS 162

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAG 213
             V    +    ++  T        + +           R A +     GLR  D C+  
Sbjct: 163 KLVSVNYKILSHVQKETTVKRVFTAAEYDGLVKATDGFWRFAIQASRELGLRLGDICQLE 222

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQ 268
               +   +                   +   A                +          
Sbjct: 223 WDCFRQPGYITVWTDKRDKRVSLKMSDGLAQAATLQPVAHARYVFPEERDIINDPTRRAY 282

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            S+ F     + G+  KS H +R   AT S   G +  ++ +  G  +    E Y   
Sbjct: 283 LSVSFTRICARLGLKGKSFHCLRHTFATESNAEGRSLTQIASDMGHSSTRTTEGYVHK 340


>gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
 gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 287

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 77/267 (28%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +          
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLEWH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  +++++                  +             +  
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKR------PHKLPQLLSCQDIAALLYHC 114

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
           +  + R         GLR S+     V  +      +K  +        V L    + LL
Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 400

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 47/363 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINS 63
           P + +  T+ GK  Y  R+ +            +    +  A               I +
Sbjct: 12  PGIYEYETKRGKK-YGIRRSYTDINHKYRTWSKSGFITWRDADIELKKFEVTLGTGQITA 70

Query: 64  PRKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
                 TL+    +  K      L    +    ++Y++ Q+    G+    +IT +  ++
Sbjct: 71  SISDTITLQAYFDKVLKRNIDLKLWRPATITQKKNYWNNQLKPVFGNQKINEITRQSYQN 130

Query: 122 GVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++       +    +   + M++L   AVR + +  N    +     K+   +  T++ 
Sbjct: 131 FIDQMIKDGYAKNTIITTNSVMQILMNDAVRNDVIVKNKLSGISIDGGKSPSSKTITEKQ 190

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYS---------GLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             Q  +               L +         GL+ S    +     +      K  +T
Sbjct: 191 YNQLMTIAPSVLSKYQYCMLALLTLGERREELMGLQFSSFKFSQWNDEEVCAIQFKKGRT 250

Query: 230 GTI------------ITVELPDGFMKLLAMTPIGKETFFINNDK---------------Q 262
                           T+ +    + +        +  +    +                
Sbjct: 251 NAEPEGGDLKNNSSYRTIYVRGEMLNICHYAITYSQNIYSKTHRNINDESFLFVNEKTGM 310

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            M   Q +          G++ + H  R + AT++   G  A ++M   G  ++   ++Y
Sbjct: 311 PMGVQQANKVLNKVGEATGIHITPHIFRHYFATMALTNGQVATDVMHWLGHSSLQMTQSY 370

Query: 323 TKG 325
           T+ 
Sbjct: 371 TRE 373


>gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 93/333 (27%), Gaps = 24/333 (7%)

Query: 14  ERTRHGKIIYYF-RKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              R+ +  + F R   G+R R    LP  +       +   L  +           K  
Sbjct: 5   YDKRNKRWRFEFDRYIAGQRQRTSRLLPKGYTRAEADKFD--LEETKRLHAIATGVSKPE 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVES 125
             ++  +  Y K       A+ S  +                +  +    +       + 
Sbjct: 63  PLIEDAVLLYLKHHAP---ALKSFENIRRELQACFEAYAGKPFSALPAVALNYKPKDADG 119

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++A   L  +R   ++A +   +      S     +       +           
Sbjct: 120 KALSAATARNRLAYIRAACRYAWKHHGMGDANPASSLPMPKVRNERHVYLGRAEFLAICR 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDS-CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +    R       YSG+R ++    A        I + +  K      V +      +
Sbjct: 180 CIKPGPSRACIRIAFYSGMRAAEPGMAAVSSDGSAFILAPEDTKNHLPRVVPVHPRIAHI 239

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           L    +            +      S  FKA A  AG+ +   H +R  +A+   +AG  
Sbjct: 240 LRNPALWPP---------RRTKWTVSKEFKAGARLAGMGHARLHDLRHSTASEMINAGVD 290

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            + +    G K+      Y+  A +        
Sbjct: 291 LYTVGGVLGHKSAVSTRRYSHLATKTLAAAVAL 323


>gi|225574741|ref|ZP_03783351.1| hypothetical protein RUMHYD_02818 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038032|gb|EEG48278.1| hypothetical protein RUMHYD_02818 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/406 (12%), Positives = 101/406 (24%), Gaps = 78/406 (19%)

Query: 13  KERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + R R     Y F   K  G+R  +      T   A  + +                  +
Sbjct: 5   RTRKRGKTWEYSFEGAKIDGKRKPISKGGFRTKADALNAGIKAKAEYDSGGRVFTPSAIS 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L   +  + K      L   ++ +++++    I    G +    +    I+  V+   H+
Sbjct: 65  LSDYLDYWYKRY-ASKLTYKTQDTYKNHIRLHIKPYLGSYRISSLEPDVIQEWVDEVLHS 123

Query: 130 -----PSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKR------KTEGIRPWTKE 177
                  S    L  +     +      Y+  NPC+ V+ P        K       +KE
Sbjct: 124 QKKLARQSIANILGVLSGALNYAVQPLRYIRSNPCIYVKIPDIKVDKKAKDHTDFVLSKE 183

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           D +Q K ++S   +      F L  G    +             ++              
Sbjct: 184 DWKQIKEYFSSAPESHSYLFFPLIVGYHTGERIGEIFGTDLLADYNPVRHTLSVSHQLQK 243

Query: 233 ---------------------------------ITVELPDGFMKLLAMTPIGKETFFINN 259
                                                    + +    T +  +   +  
Sbjct: 244 QKGILLYTNPKYDSFRINKIDSLLEAEIQKELKRRECDRLRYREYYKNTYLLPDNTIVQL 303

Query: 260 DKQKMNATQFSIWF--------------------KAKATKAGVN-KSAHGVRKFSATISA 298
                    +   +                    +    K G+     H +R    TI A
Sbjct: 304 PADSQVPDSYQEIWPLGVKQDGTILTTEHAKHMSRIVKDKVGIELFHPHCLRHTHGTILA 363

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
            +GA+   +M   G K +      Y    +   +  +      + +
Sbjct: 364 QSGASPKTIMERLGHKNIKVTMERY--VFNTEEMQNQAVSLFENAI 407


>gi|319945806|ref|ZP_08020057.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319748166|gb|EFW00409.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 377

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 113/373 (30%), Gaps = 54/373 (14%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64
           +T  +T+ GK       G      +RIR+      +   A      +     K +  +  
Sbjct: 1   MTIRKTKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEALELEQHIRVVELKEKQFDFV 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                    L  +  K+    S     R ++E     I     + +  K+T  HI    E
Sbjct: 61  VTTDMLFDLLEEDDLKNGRKISYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEFRE 117

Query: 125 SRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             K  P           ++  + L  ++ +F   +R+  +  NP  ++ +   +   I+ 
Sbjct: 118 YLKTKPKKQNENEVLSYNTINKVLILLKKIFDTGIRKSLIDKNPVKNLRKLPIRKPDIKF 177

Query: 174 WTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------H 216
           W+ E+  +F+    +      L F    ++G+R  +                        
Sbjct: 178 WSIEEFTRFRELIRDDEISYDLFFIIAFFTGMRMGEILALNWNDINLLTNTIYVTKTVYF 237

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKM 264
           + N  +   T+       + +     ++L    + ++               I +    +
Sbjct: 238 VNNTSYINTTKTRSGTRNITINQKLAEMLIDWKVKQKEKLEEFTKNTEELQIIQSTPITI 297

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                   FK    +         H +R   A++  + G     +    G  ++    +T
Sbjct: 298 TKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDT 357

Query: 322 YTKG--ADRIRLG 332
           Y+    + +  L 
Sbjct: 358 YSHLYPSKQKTLA 370


>gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528]
 gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM
           13528]
          Length = 393

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 97/390 (24%), Gaps = 71/390 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY--FRKG---HGRRIRLPYPHESTFIPAYMSALTGST 55
           M              T +GK  Y   +  G    G+RIR       +   A    L    
Sbjct: 1   MATKTNF--------TSNGKKYYRINYDIGMDADGKRIR-KQFVGKSRKEAEKKKLDYIN 51

Query: 56  PKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111
                +   +      TLK  +  +      G++   +   +E  +   I     G    
Sbjct: 52  KMNAGLKDAKNMWLAQTLKSWL--FEVVKMSGNIKPTTFARYEGLYRNYIENSPIGCMSL 109

Query: 112 RKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            K+ +  I+           S          ++    +AV   Y+  NPC   +    K 
Sbjct: 110 DKLESIQIQRYYNKLFRQGKSSNQINYVNKFLKQFLNYAVDCGYILKNPCSGKKVAIPKE 169

Query: 169 E-----GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--I 221
                         +    K   +E S+ +    F L +G+R  +        +      
Sbjct: 170 NSDKVSERHIPVFNNEDLTKIIKAENSKIKYIALFSLSTGMRRGEIIGLKENDIDYKLKE 229

Query: 222 FSIKTQKTGTIITVELPDGFMKLLA----------------------------------- 246
             I+     T I  +      + +                                    
Sbjct: 230 IHIRRTVATTTIFDDNNKRSKQTIVQEPKSKNSKRTIPLPASLVEIIKASIKIKKSEKLK 289

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
                     +  F++     +NA      +        +  K  H +R   AT   +  
Sbjct: 290 AGSSYCKDNLDYIFLSEQGNLINAGNLDKTWSKFLRSLNIPHKKFHALRHTYATKQFENN 349

Query: 302 ATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                +    G  +++     YT    + +
Sbjct: 350 IPLKTISMLLGHSSIEITANIYTHVLKKEK 379


>gi|224823635|ref|ZP_03696744.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224604090|gb|EEG10264.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 433

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 89/339 (26%), Gaps = 37/339 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYP---HESTFIPAYMSALTGSTPKREYINSPRKKPTT---- 70
            GK     R   G ++                +   +         +     +  +    
Sbjct: 8   KGKWRATVRIKQGGKLVFHKSMTHDTKRLAEQWALDVEAKARTETGLAELLAREGSRGVL 67

Query: 71  LKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           ++ LI  Y +      L     ++ +  +         GD     +T   +      R+ 
Sbjct: 68  VRDLIGRYIQYVG--KLKPLGATKSAVLNTLA--ASDLGDNPVTAVTAGVLLDYCNKRRE 123

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----------KTEGIRP 173
              ++ ++  Q+   +R +F  A     + ++     E               + +    
Sbjct: 124 KYGNSAATIAQYFGYLRQVFDLAKPVWGIGVSAAPFDEVRPVLLKLGLIGQGSERDRRLV 183

Query: 174 WTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGL--RCSDSCRAGVQHLQNNIFSIKTQK 228
             +           + ++ R   +A  F     +  R  +        +     ++  + 
Sbjct: 184 GDEYARLLKWFENYDATRARELRMAPVFRYAVAMAARRGEIVGILRSDVDRQARTVVVRN 243

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                     D  + LL       E       +           S  F+      G+ + 
Sbjct: 244 RKDPRNKIGNDQVLPLLGEAWGIVEAQLASHDDLRVFPYTEISISTCFQRACEVLGIEDL 303

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R    +   +AG +  ++    G KT +    YT
Sbjct: 304 HFHDLRHEGTSRLFEAGYSIEQVALVTGHKTWNMLRRYT 342


>gi|321157036|emb|CBW39024.1| Integrase [Streptococcus phage 040922]
          Length = 375

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 120/375 (32%), Gaps = 56/375 (14%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           + + + KS    ++  +++    S +    Q+I    D     +  + ++  +E    + 
Sbjct: 68  IYNLFYKSWS-QTVKESTKHNCKSIDKIMKQVIPS--DTLLANLDRRFLQEAIEKIIESN 124

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQ- 180
              +A +    +R +F +AV+  Y+  N       P++               T ++++ 
Sbjct: 125 GYITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKA 184

Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                +      +       L  +G+R  +     ++++      I+             
Sbjct: 185 LVDVLNRREYHQKYADMVLVLALTGMRYGELTALQLKNIDLENNKIEITGNFDSVNKIKT 244

Query: 233 --------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273
                    T+++ +  ++ +    +               F      Q      F    
Sbjct: 245 LPKTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQIL 304

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           K    +A + K  S+H  R    +  A++G     +M   G        E Y+   +   
Sbjct: 305 KKYGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE--- 361

Query: 331 LGIKNSRRISSVVDS 345
                  ++ + +D+
Sbjct: 362 ---DMEDKLVNKLDT 373


>gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 386

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 42/367 (11%)

Query: 6   RLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIPAYMSALTGSTPK 57
           + P  + +++  +G +  +   +R G   +  L                  +  T    K
Sbjct: 9   KEPVKLREKKLSNGNVSLFLDIYRNGKRHKEYLKLYLIDAKTPLEKEQNRQTLATAQAIK 68

Query: 58  REYINSPRKKPTTLKW-------LISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG 107
            + +   +    +           +  YRK          S+ ++    S    +     
Sbjct: 69  SKRLIELQNGEYSFTHQFKENTPFLEYYRKMVEERRKNPESKGNWGNWRSCLRYLEIYCD 128

Query: 108 DFD-YRKITTKHIRSGVESRKH------------------TPSSAIQFLTS---MRVLFK 145
           +   +R +T + +    E  +H                     S    ++    +R    
Sbjct: 129 EKTTFRDVTPEFVMGFKEFLEHVEKDTHKRVGPRRERDTFQGLSQNSKVSYFNKLRACIN 188

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A  +  + INP   +E  K         T ++++Q  +        + AF F   +G+R
Sbjct: 189 QAYDERVIPINPLRGIEGFKAAEVKRDYLTLDEVRQLAATPCRYPILKRAFLFSCLTGIR 248

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
            SD  +     +Q      +          +               +             
Sbjct: 249 KSDIQKLTWGEVQKFGEYTRIVFKQKKTGGQEYLDITPQAEKYLGERGNPDDLVFTGFTY 308

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               S+  +  +  AG+NK  + H  R   A +  D GA  + +    G K +   + Y 
Sbjct: 309 GAWTSLELQRWSLAAGMNKNLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYA 368

Query: 324 KGADRIR 330
           K  D+ +
Sbjct: 369 KVLDKNK 375


>gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 411

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      T K        +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
              K + +    +   +++ S   E  +    F  +L++G+R  +        +      
Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDIDFDNGL 234

Query: 218 ----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                            N       +      ++ +         M    ++TF I    
Sbjct: 235 ISVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|125625033|ref|YP_001033516.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493841|emb|CAL98834.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071839|gb|ADJ61239.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 117/396 (29%), Gaps = 65/396 (16%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R     +S  +       A+         I
Sbjct: 2   NIKEYTKKDGTKVYRTNVYLGVDNLTGKQVRTSVTAKSKKMCETKAHQAINDFINNGSTI 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKH 118
              +      + L   + +S     +  NS     ++    + I+   G +   KIT   
Sbjct: 62  AREKVVFDNFEALALSWFESYKLT-VKENSISVADNYLR--NYILPPIGSYKLSKITPML 118

Query: 119 IRSGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++  V    +  ++A                  L  ++ +  + ++   +  N  + V  
Sbjct: 119 LQELVNKWANNANTAEIINGKRERGKCKDYKLLLNFIKRILDYGMQLGAIEDNSAIKVFP 178

Query: 164 PKRKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           PK KT  ++     D                 ++  + +  ++ LL +GLR  ++     
Sbjct: 179 PKLKTRTVKKIKYFDNEELKQFLLYLDTLEPSTDNRKSKTLYKLLLATGLRVGEAMALSW 238

Query: 215 QHLQNNIFS---------------IKTQKTGTIITVELPDGFMKLLAMTPIG-------- 251
             +  N                     +   +  +V L +  ++ L              
Sbjct: 239 SDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESNRSVFLDNDTLESLKEWRKYQNDGAISL 298

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
            ++   +  ++  +              AGV     HG R   A++  +      E+   
Sbjct: 299 HDSLVFSYHQKMRSYEIERQKLVRHFKNAGVPNIGFHGFRHTHASLLMNNDVNPKEIQRR 358

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
            G         TY+  A       + + + SS++ +
Sbjct: 359 LGHADYAITMNTYSHLAKSKE--KETAEKFSSILKA 392


>gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315]
 gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 390

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 106/387 (27%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R   +      +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GDYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E      I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWI-SQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++ +     +TS  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 188 EGSQPRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                 +A                 Y+G+R  +        +     +I           
Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 225 --------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W KA   K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 320

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 84/271 (30%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +   + +      ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKGLRDRAM 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++ +  V  +Q        +  G                 I   L   
Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHWYLERS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L         +    +    ++A       +A   KAG+       HG+R  +AT +
Sbjct: 219 GHHLGDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118]
          Length = 326

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 80/282 (28%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
           L+ L  ++           N+  ++     Q              ++ +R   +  +++ 
Sbjct: 29  LEDLFQQFIIFIDAT---PNTVRTYRGSLKQWFLYLRQNQIGHPDSETVRQYRQKLQNSG 85

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++   ++ +++  F+W     +              K       T    +Q      
Sbjct: 86  KKPTTVKNYIIAVKRFFEWTEEAGFYPNIAKYIKSGHLSKNFKKDYLTGSQARQILDKID 145

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IIT 234
                G +       +L  GLR  +  RA +  ++           G           + 
Sbjct: 146 RSTIKGKRDYAMLVTMLTMGLRTIEVSRADIDDIRTKGNMTVLYVQGKGHEEKDDLIRMP 205

Query: 235 VELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
             +       L++            +   +N   +M         K     AG +    +
Sbjct: 206 QHVESAIRDYLSVRKANDLSKPLFVSTSNHNANGRMTTRSIRRIVKTAFISAGYDSPRLT 265

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AH  R  +AT+S   GAT  +       + +   E Y    D
Sbjct: 266 AHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAHNID 307


>gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 573

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 93/306 (30%), Gaps = 34/306 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKS 106
                + E+   P    TT++  + +        +L   +  + E    +          
Sbjct: 163 RADVRELEWARVPTAIATTMRDYLQQ-----ITTTLRPGTVKNAELTLREFALLVTAEDP 217

Query: 107 GDFDYRKITTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQE---YVA 154
                  +  KHI          P+         +    L+ +R  F+     +     A
Sbjct: 218 ETRCVANLRRKHIERYKTWLLERPAARGGPLHRHTVRDRLSKLRGFFRRLDEWDTEDRPA 277

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRA 212
                  + P       R        +  +       P  RLA E L  +G+R S+    
Sbjct: 278 RQLVFDSDFPIADEPLPRFLDDAAAAKLLAAARNDPDPFARLAIEILARTGMRRSEMLGL 337

Query: 213 GVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-----INNDKQK 263
            +  +          +   K  T   V L      L+      +           +  + 
Sbjct: 338 TIDAVVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRPEGLRSDLLFTDHGRP 397

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +NA++     +  A +AG+ + + H +R   AT + + G +   + A  G +++     Y
Sbjct: 398 VNASRIEAAVRNAADRAGLGRVTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVY 457

Query: 323 TKGADR 328
            + A+R
Sbjct: 458 ARIANR 463


>gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 326

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
              I+ +  +      +  S   +ES   ++  K G  D R ITT+ IR  + +     K
Sbjct: 49  ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+  +P   + + K        ++ E+++  +   +
Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +        +       +   K      V         L 
Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                +           +   +++         +    + G+     H  R+  AT + D
Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310


>gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 301

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 31/282 (10%)

Query: 88  AVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141
           + NS  +++      +   G       R IT  H+ +     + +  +  +    L+++ 
Sbjct: 19  SDNSVDTYDRAIRTFLDFLGISSPEELRTITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
            LF   + Q+ V IN    V+R          +     +++   +        G + +  
Sbjct: 79  SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQGLRDKAI 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKE 253
              L ++G R S+ C   V+                         +  +++     + + 
Sbjct: 139 LSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLDQYLTET 198

Query: 254 TFFINN----------------DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
               +                  K+K++       F   A   G+   + H  R    T 
Sbjct: 199 GHGPDQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           + +       +  T G   +   + Y K   + R     + R
Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYRESASFAVR 300


>gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 344

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 34/291 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
            TL+   + Y +     + +  +  ++            + G     +++   + +    
Sbjct: 19  QTLRQYTTAYLEHLTATNHSPRTVEAYSERLRPFVTWCEERGLTQAAQVSLSVLEAYQRH 78

Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174
                              + L+++R LF+W +++ ++  NP   +  PK +        
Sbjct: 79  LHGYRKADGKPLAQGGQLNR-LSAIRGLFRWLLQRHHILYNPAEQITLPKAEKRLPAQIL 137

Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               T+  M+   +    G + R   E L  +GLR S+     +  +      +  ++  
Sbjct: 138 SEEETEAVMEAQDTDTLTGLRNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGK 197

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------------ 278
                 +P G   L+ +             K        +IW K  A             
Sbjct: 198 GNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIR 257

Query: 279 -KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 258 DDAHLKKAGACHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
 gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891]
          Length = 320

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++ ++  + +         ++  + +   +         A +   
Sbjct: 10  KEHMRARHYATKTIDAYINWISRFVTFHHMAHPSRLDERSVEEFLTHLALHDKVAAKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +           +   +  ++     +     TK + +QF        + +L   
Sbjct: 70  LALNAINFLYRDFYRTPLENDMKFQKSLLDRKLPVVLTKHETRQFLKH--IDPRYKLHIM 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------------------- 228
            L  SGLR  ++ R  V  +  +  +++  +                             
Sbjct: 128 LLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRVVTLAKELVPMLNEQQALAQRY 187

Query: 229 -------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                     EL   +  L     +  +       +  +NA   
Sbjct: 188 YKKDMNTPGYAGVWLNQSLQKKYRGAELEFKWHYLFPSNKLSTDPETGLVRRHHINAVAL 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A +AG++K  + H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHVLE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 329

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 90/278 (32%), Gaps = 12/278 (4%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRK 113
           K E  +S  +   T + L++ +  +      +  S   ++   ++++   G    +    
Sbjct: 37  KIEKNDSMEEDIWTNERLLNTFLSAKRVEGCSEKSLSYYQKTIERMLNSIGKEIKYIVTD 96

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               ++      ++ +  +       +   F W   ++Y+  +P   + + K  +     
Sbjct: 97  DLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDT 156

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232
           ++ E++++ +    E  +     + L  +G+R  +      Q ++      I   K    
Sbjct: 157 YSDEELERMRDSCHE-IRDLALIDILASTGMRVGELVLLNRQDIKFGERECIVFGKGDKE 215

Query: 233 ITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-S 285
             V         L      +                ++      +  +    +  +NK  
Sbjct: 216 RVVYFDARTKIHLQNYLNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVH 275

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H  R+  ATI+ D G    +L    G + +D    Y 
Sbjct: 276 PHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYA 313


>gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
 gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162]
          Length = 298

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 28/292 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP 130
            ++EY +        + ++  ++ +    +   + +      ++    +R+ +  R  + 
Sbjct: 4   ALAEYERYLRLERGRSEHTVRAYLADLTALFEFAAERGVAVDRLDLATLRAWLGERAASG 63

Query: 131 S---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +   +  +  +S R    WA R+ ++  +P   ++ P+ +       + +D     +  +
Sbjct: 64  AARTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLPGVLSADDAAAALTNAA 123

Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELP 238
            G+        + +   E L  +G+R S+ C   V    ++        K     TV   
Sbjct: 124 SGAAEGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERTVPYG 183

Query: 239 DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKA--GVNKSA 286
               ++L                    F+     +++  Q              G   + 
Sbjct: 184 APAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGREVAP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           HG+R  +AT   D GA    +    G  ++   + YT     R+R   + + 
Sbjct: 244 HGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAH 295


>gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42]
 gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/360 (10%), Positives = 105/360 (29%), Gaps = 46/360 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--SPRKKPTTL 71
            +  +G   Y  +       +     +  F     + +  +  ++  +N       PT+L
Sbjct: 11  RKVSNG-WQYRIKFKDPYTHQYKEKTKRGFKTKKEAQIAAAEEEQRILNGFEIENVPTSL 69

Query: 72  KWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K+ + ++ K     ++  N+  +   +    II    + + + +     ++ +       
Sbjct: 70  KYFLEDWLKVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFINHLTDQG 129

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV-------AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S        R +     +   +         +  +S +  K++       T++  +  K
Sbjct: 130 YSKGTVKIIHRTMNNAMCKAVSLKKIGTNPCDDVVISNKNQKKEEGLKYMRTEDIPRFLK 189

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------------I 224
           + +       + F+ L+ +G+R  ++       +     +                    
Sbjct: 190 ASYQYNYIYYIFFKTLINTGMRKGEAAALQWSDIDFKEQTINITKTLDFTAKDDEELFGD 249

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------ATQFS 270
               +     +        LL       E   +  +  K +               +   
Sbjct: 250 TKTFSSRRTIMIPAPLAKDLLNHKKWQNENKLVLQESYKHDLDLVFTKTDGNFLPKSTLF 309

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
             F     K  +     H +R   A +  ++GA    +    G K+++     Y+  +D+
Sbjct: 310 NAFSRILKKVNIPSLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 369


>gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium]
          Length = 291

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 23/274 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+  L           +LA  ++ ++      + R          + + +R         
Sbjct: 7   TVSPLRQRMLDDMRMRNLAPKTQSAYIRAVRSLTRYL-RRSPDTASPEDLRLFQLHMVDA 65

Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +SA      LT ++  F   + +     +    +   +         ++E++ +     
Sbjct: 66  GTSAVSLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEVSR-LIAA 120

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +   + + A      +GLR  +  R  V  + +   +++  +             + L  
Sbjct: 121 APSIKYQTALSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRKDRYAILPPLLLQR 180

Query: 247 MTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
           +    K              F   +  Q M+A Q +      A  AG+ K    H +R  
Sbjct: 181 LRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAGIGKRVAMHTLRHS 240

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT   +       +    G K ++    Y + A
Sbjct: 241 FATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVA 274


>gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 274

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 21/264 (7%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQ 135
                 +  +  S+     Q             KI    I        +       +  +
Sbjct: 12  LAKTRKSEKTIDSYIRDISQFNDYLKTNKKKLAKIKISDIDEFKNFLIYHKELKIKTINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193
            L S++   K+      +        E+ + +       + +D++         +  + R
Sbjct: 72  KLVSIKQYLKFNNISVDI------KQEKVQMQNFLDDMLSNQDIENIIKATYAKDDLRAR 125

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                L Y+G+R S+  +  + +           K      V +P+    +       + 
Sbjct: 126 TIIYTLYYTGMRVSEMLQLTI-YDTKKSSISIIGKGSKHREVFVPNKLKTIWDNYLQVRI 184

Query: 254 TFF---INNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                     +  +N        K  A  AGV+KS   AH  R       AD G     +
Sbjct: 185 KKSTALFTGKRGPINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYCKNLADRGIDISTI 244

Query: 308 MATYGWKTVDQAETYTKGADRIRL 331
               G + ++    YT+      L
Sbjct: 245 ADIAGHQNINTTRIYTRKTKEELL 268


>gi|253774476|ref|YP_003037307.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160604|ref|YP_003043712.1| putative integrase [Escherichia coli B str. REL606]
 gi|297516723|ref|ZP_06935109.1| predicted integrase [Escherichia coli OP50]
 gi|242376315|emb|CAQ31008.1| DLP12 prophage; predicted integrase [Escherichia coli BL21(DE3)]
 gi|253325520|gb|ACT30122.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972505|gb|ACT38176.1| predicted integrase [Escherichia coli B str. REL606]
 gi|253976715|gb|ACT42385.1| predicted integrase [Escherichia coli BL21(DE3)]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVPTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E  +     +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|193067676|ref|ZP_03048643.1| prophage DLP12 integrase [Escherichia coli E110019]
 gi|218703820|ref|YP_002411339.1| putative integrase; DLP12 prophage [Escherichia coli UMN026]
 gi|293403658|ref|ZP_06647749.1| prophage DLP12 integrase [Escherichia coli FVEC1412]
 gi|298379268|ref|ZP_06989149.1| prophage DLP12 integrase [Escherichia coli FVEC1302]
 gi|300897234|ref|ZP_07115677.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300903189|ref|ZP_07121121.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300929099|ref|ZP_07144593.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 187-1]
 gi|301301694|ref|ZP_07207829.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|192959088|gb|EDV89524.1| prophage DLP12 integrase [Escherichia coli E110019]
 gi|218430917|emb|CAR11791.1| putative integrase; DLP12 prophage [Escherichia coli UMN026]
 gi|291429511|gb|EFF02531.1| prophage DLP12 integrase [Escherichia coli FVEC1412]
 gi|298280381|gb|EFI21885.1| prophage DLP12 integrase [Escherichia coli FVEC1302]
 gi|300358976|gb|EFJ74846.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300404804|gb|EFJ88342.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300462972|gb|EFK26465.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 187-1]
 gi|300843191|gb|EFK70951.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315256368|gb|EFU36336.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
 gi|324116774|gb|EGC10688.1| phage integrase [Escherichia coli E1167]
 gi|327254885|gb|EGE66501.1| prophage DLP12 integrase [Escherichia coli STEC_7v]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E  +     +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 107/353 (30%), Gaps = 38/353 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            VT+ +T  G+  Y  RK    +              + +              P     
Sbjct: 3   NVTRYKTSKGENRY--RKPDSTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKR 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH 128
            +  L  ++ K   W      +R++    +     +   D     IT   +++ +     
Sbjct: 61  RVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIA 119

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE----DMQ 180
           +    S  +   +M  + + AVR + +  NPC +VE P   R+       T         
Sbjct: 120 SAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFAD 179

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIK 225
           +       G++ R     L + GLR  ++     + L                   +   
Sbjct: 180 ECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEG 239

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATK 279
           T K      V +P   M+ L      +E               K +A + + W+      
Sbjct: 240 TPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVC 299

Query: 280 AGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            G  K    + H +R  +A+++  AGA    L    G K      + Y    D
Sbjct: 300 LGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 352


>gi|302385146|ref|YP_003820968.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195774|gb|ADL03345.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 335

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 87/271 (32%), Gaps = 15/271 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+  Y  +     L+  +  ++      ++  + D + R IT+  I+  ++         
Sbjct: 55  LLQMYEMNVKKDGLSEKTVKAYMGAMRNMLCVT-DKNIRHITSVDIKYYLDLYAGKGNNV 113

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +  +F W  +   +  NP  +V   K +   I      ++++ +    E  
Sbjct: 114 RTVNNERRFLSAVFTWFRKHGIINANPVEAVPIKKERKPPIDYLKGVEIEKLRVACKE-P 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + R   EFLL +G R  +  +   Q +  N   I      T     +    + ++ +   
Sbjct: 173 RDRALMEFLLSTGARIGEVPQIRRQDIDWNTGEILIYAHKTSDYRTVYLNDVAMVHLEKY 232

Query: 251 GKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300
                                ++     +  K    KAG+ +    H  RK  AT     
Sbjct: 233 LDSREDNSEALFAGVRAPYNTVHEDGLRLIIKRIGEKAGLKRRVYPHLFRKTMATTLRMK 292

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
                ++    G K       +   A+++ L
Sbjct: 293 DCAIEDIQQILGHKDPSTTLGFYAAANQVHL 323


>gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 397

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 26/309 (8%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFE--- 96
           F     S        +      R+   T+  L ++Y    +      ++   + ++    
Sbjct: 56  FQRLEFSEELSLERIKSEYLGKREAMETVLSLFTKYNNDMYAQIGCGVS---KANYRKFD 112

Query: 97  ---SYFDQIIR-KSGDFDYRKI--TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKW 146
               +F   +  K    D   I  T   I       +     + ++AI+ L + + +  +
Sbjct: 113 ICKRHFTHFLEIKYARTDLNAIELTPIVIHDFDVYLRTIVGQSFNTAIKTLKTFKTVIIF 172

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
             +      +P L++   K K       T E++           +    R  F F  ++G
Sbjct: 173 GRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEIDTIMHKEFATQRLVNVRDIFLFSCFTG 231

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       ++                        + +  M          N     
Sbjct: 232 LAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPKMIIEKYAGCAKNGRLIP 291

Query: 264 M-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + +  + + + K  A   G+NK  + H  R   AT+    G     +    G  ++   +
Sbjct: 292 ILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQ 351

Query: 321 TYTKGADRI 329
            Y +  ++ 
Sbjct: 352 LYARITNKK 360


>gi|194437475|ref|ZP_03069572.1| prophage DLP12 integrase [Escherichia coli 101-1]
 gi|260853752|ref|YP_003227643.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|291281447|ref|YP_003498265.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615]
 gi|293418603|ref|ZP_06661038.1| prophage DLP12 integrase [Escherichia coli B088]
 gi|194423644|gb|EDX39634.1| prophage DLP12 integrase [Escherichia coli 101-1]
 gi|257752401|dbj|BAI23903.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|290761320|gb|ADD55281.1| Prophage DLP12 integrase [Escherichia coli O55:H7 str. CB9615]
 gi|291325131|gb|EFE64546.1| prophage DLP12 integrase [Escherichia coli B088]
 gi|323153442|gb|EFZ39697.1| prophage DLP12 integrase [Escherichia coli EPECa14]
 gi|323963303|gb|EGB58867.1| phage integrase [Escherichia coli H489]
          Length = 387

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E  +     +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149]
 gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149]
          Length = 332

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 87/303 (28%), Gaps = 37/303 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSG 122
           L+   +++       + + ++  S+   +   +R                ++T   + + 
Sbjct: 10  LRMFFTDWM--VQQRNASQHTVKSYRDTWRLFLRFVAVRCGKPVVRLTLSELTAAEVIAF 67

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +      R  T  +    L ++R  F +   +E   +  C  V     K   IR     +
Sbjct: 68  LHHLESVRGDTIGTRNCRLAALRSFFGFVATREPELMAQCAEVMNVPTKKAPIRAPDYLE 127

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            +       Q       G +      FL  +G R  ++     Q ++           K 
Sbjct: 128 PEEVQAILAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDLCPQAIRFEAPGCVRLYGKG 187

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNK 284
                  L    + LL               F+N     ++A+            A V+ 
Sbjct: 188 RKERISPLWPETVALLRSLLKRVPRPADAALFVNRYGSPLSASGVRFKLAEYVKAAAVDV 247

Query: 285 --------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                   + H  R  +A     AG     + +  G  +++    Y +   +  R  ++ 
Sbjct: 248 PTLAQKHVTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALEQ 307

Query: 336 SRR 338
             +
Sbjct: 308 VEK 310


>gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 326

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
              I+ +  +      +  S   +ES   ++  K G  D R ITT+ IR  + +     K
Sbjct: 49  ADYIALFLAAKKIEGRSEKSLKYYESTILKMTEKVG-KDARYITTEDIREYLSNYQLNHK 107

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   ++Y+   P   + + K        ++ E+++  +   +
Sbjct: 108 SSKVTIDNIRRILSSFFSWLEDEDYILKIPVRRIHKVKTGQSIKETYSDEELEIMRDSCT 167

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           +  +     + L  +G+R  +        +       +   K      V         L 
Sbjct: 168 K-IRDLAIIDMLASTGMRVGEMVLLNRDDVNFEERECMVFGKGDKERIVYFDARTKLHLE 226

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                +           +   +++         +    + G+     H  R+  AT + D
Sbjct: 227 KYLDSRTDNNSALFTSLSAPHERLGIAGIEARLRKLGGELGIYKVHPHKFRRTLATKAID 286

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G + +D    Y 
Sbjct: 287 KGMPIEQLQKLLGHQRIDTTLQYA 310


>gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703]
          Length = 332

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 31/292 (10%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              + +     ++    L  LI  + K       +++ + S  +  + I +  G+     
Sbjct: 20  EQARHKPWLGEKEDRRKLLELIDLWYK---LHGCSLSDKKSRLAKLEIICKGLGNPIAAD 76

Query: 114 ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAIN 156
           IT K      + R                  T  +       +R +F    R  E+   N
Sbjct: 77  ITPKDWAHYRDQRLRGEINNGYSTSLRTRMVTTGTVNSEQAYLRAVFNELTRLGEWSLPN 136

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGV 214
           P +++    +    +     + +            P L       L +G R ++  +   
Sbjct: 137 PLMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPELTLIVRLCLSTGARWNEIAKIKA 196

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             +  N  +    K     TV L +   + LA                     QF    +
Sbjct: 197 SQISPNKITFINTKGKKNRTVPLSEEMYQALAAHKGKAFAPC---------YKQFYRVIR 247

Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               +  V +  H +R   A+    AG     L    G   +     Y+  A
Sbjct: 248 LAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFA 299


>gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12]
 gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 337

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%)

Query: 72  KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRS 121
            + I  +      +  +L+ N+  S+      ++                  IT   +  
Sbjct: 10  GYWIRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVD 69

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            ++S    R  +  +    L ++    K+        I    ++     K       T  
Sbjct: 70  FLDSLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYL 129

Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IK 225
           + ++            S+G +      FL  +G R  ++    ++ L             
Sbjct: 130 EKEEMNALLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSI 189

Query: 226 TQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281
           T K        L       L          E  F+N   Q +            A K   
Sbjct: 190 TGKGNKTRRCPLWQHTRDALSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKE 249

Query: 282 ----VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + K   S H +R  +AT    +G   + + A  G  +++    Y + 
Sbjct: 250 LIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEV 300


>gi|312978150|ref|ZP_07789894.1| prophage integrase [Lactobacillus crispatus CTV-05]
 gi|310894868|gb|EFQ43938.1| prophage integrase [Lactobacillus crispatus CTV-05]
          Length = 402

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 109/388 (28%), Gaps = 59/388 (15%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGST 55
            +  P +T+ + ++GK  +  R   G         +  R                     
Sbjct: 6   RKKDPEITEYKLKNGKKFFRLRTYIGISPETGKAIKVTRSKLKSRKEAEEVRRELKAQGP 65

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                    ++K  T++   + + +       +   R   E++ +QI  + G+     I+
Sbjct: 66  GTIRKKLETKQKKITVRDAYNAWLEVMRNDVRSSTIRRIKETWKNQIEPEFGNTYISNIS 125

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             H++  V +      +       +  + K+A+ + +   +P   V  PK+     R  T
Sbjct: 126 PDHVQKYVNNLASKYVAYKIMANQLHRIIKYAIFRHWCDKDPFDFVIMPKKSAIASRDNT 185

Query: 176 KEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220
               +  +                  F  +   G R  ++       +  +         
Sbjct: 186 LNFYELDELKRFLDVTKKFSPMTYTYFLTVASLGCRRGEAFALNWSDIDFDKRTVKIERT 245

Query: 221 ------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                               ++           E  +   K+    P+   T   +    
Sbjct: 246 VAIDENDKKTIDDVKNGIHHTVPMSDHLYTALKEYQNYCHKIGDNCPMPFHTKKGDYMWS 305

Query: 263 KMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFSATISAD--AGATAHE 306
             + T     ++  A +                   + HG+R   AT+  D   G T  +
Sbjct: 306 SQSDTWIRAIYRYDANQCKEWNDKHPQDEKKPLRKITPHGLRHTLATLLYDGTNGITPKD 365

Query: 307 LMATYGWKTVDQAET-YTKGADRIRLGI 333
           +    G KT   A   YT   ++ + GI
Sbjct: 366 IQFVLGHKTPRTAMRIYTHVTEKQKKGI 393


>gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 75/271 (27%), Gaps = 25/271 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           L            L+  ++ S+     +     G          +    +   +     +
Sbjct: 11  LRQRMIDDMRMRKLSPKTQASYIRVVKRFAGFLGRSPDTASVEDLRRYQL--HLVDHGIS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    LT ++ LF+  + +  +          P      +      +         + 
Sbjct: 69  PISLNATLTGLKFLFETTLDRPELLTKM-----HPVHVPHKLPVVLSREEVARLIAAVDN 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + + A      +GLR S+     V  + +   +++ ++          L    ++ L  
Sbjct: 124 LKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRA 183

Query: 248 TPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                +    ++  Q +    A A  A ++K    H +R   AT
Sbjct: 184 WWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +       +    G K ++    Y + A
Sbjct: 244 HLLEQKVDIRVIQVLLGHKKLETTALYAQVA 274


>gi|313903463|ref|ZP_07836854.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466284|gb|EFR61807.1| integrase family protein [Thermaerobacter subterraneus DSM 13965]
          Length = 383

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/383 (10%), Positives = 105/383 (27%), Gaps = 45/383 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             + K   +   +IY  R     + +  +             L               + 
Sbjct: 3   GHIRKRGNKWAVVIYLGRDEATGKKQYRWHGGFKTKADAERELARLVNDAHTGAYVEPEK 62

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--- 124
            ++   +  +        +A  +   +E      +I   G +  +K+   HI++      
Sbjct: 63  MSVAEYLRFWLGDIRSR-VAPTTFHRYEIIVERHLIPALGKYQLQKLRPAHIQAYYRDAL 121

Query: 125 -------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +  + +     +    + AV+ + +A NP  +V+ P+ + + +R   K+
Sbjct: 122 ENGRRDGKGGLSKRTVLHHHRVLHEALEHAVQLQMLARNPADAVKPPRPERKEMRVLDKD 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------- 217
           ++++        S+  +     + +G+R  +      + +                    
Sbjct: 182 EIERLLETARR-SRYYIPILLAIATGMRRGEILALRWEDVDLEGGRISVRQTLVKTGDGL 240

Query: 218 ----------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                     +  I                       L              + +  +  
Sbjct: 241 QFTDPKTDRSRRVIRIGPLVVQALRRHRAQQAQEKLRLGPAYQDHGLVCAQANGKPYDPA 300

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
           +FS  F + A +AG      H +R   AT+    G     +    G  +     +TY   
Sbjct: 301 EFSKAFTSLAKRAGFPDLRFHDLRHSHATLLLRDGTPIKAVAERLGHASAAFTLDTYGHS 360

Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348
              ++              +++P
Sbjct: 361 LPDMQEAAARVVDALLSAPAENP 383


>gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 388

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 91/266 (34%), Gaps = 19/266 (7%)

Query: 82  AHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHI---RSGVESRKHTPSSA 133
           A   + +  +  +        +  +R  G  D     IT       R  ++   + P++ 
Sbjct: 114 AQRETKSEGTYSNNRCSDRQLNAFVRSRGEEDIPLTAITIDFFDDYRFHLKKEGYAPATI 173

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192
            + L  +  L   AV Q  +  NP   V+    +    R  +K D+ +F +F  +  +  
Sbjct: 174 NRHLCWLSRLMYRAVSQGTIRFNPFEEVKYETVER-KPRFLSKGDVAKFLAFPLQDERAE 232

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLL 245
             R  F F +++GL  +D        ++ N    +  +     T     + L     ++L
Sbjct: 233 LSRRMFLFSVFTGLAFADLQSLRASQIETNSEGKRYIRKARQKTEVESLIPLHPIAEQIL 292

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
           ++                M+  +     KA     GV    S H  R    T++ +AG  
Sbjct: 293 SLYTKKNSKEDYKIFPDTMSKGKLLTHLKAVGLACGVRTPLSYHVGRHSFGTLTLEAGIP 352

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G  ++   + Y +  D+ 
Sbjct: 353 IESIAKMMGHSSIASTQIYAQITDQK 378


>gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
 gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 75/278 (26%), Gaps = 24/278 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
             + + A +   +  +  ++     Q             T   +    +S + T  P++ 
Sbjct: 39  DLFARFAQYLDASPRTVDTYARALKQFRLWLATQGIGSPTRADVLRYRDSLRQTRKPATT 98

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGS 190
             ++ ++R  F+W  ++                +       T   MQ            S
Sbjct: 99  QLYMAAIRQFFRWTEQEGLYPDIAAHLKGAKISREHKKDALTPAQMQAVLGALSGHDLMS 158

Query: 191 QPRLAFEFLLYSGLRCSDSC----------RAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +   A   +  +G   +             R     L         +     +   + + 
Sbjct: 159 RRDFALVSVAVTGGLRTVELVRADVGDLRNRGEHTVLYIQGKGQMEKADYVKLPFPVLEA 218

Query: 241 FMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291
               L M    +            N   ++     S   K    +AG +    +AH +R 
Sbjct: 219 VNAYLTMRGKTRPEDALFASLSHRNGGGRLTTRSVSRIVKTAFRRAGWDSDRLTAHSLRH 278

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +AT++   G +  E         ++    Y    +R 
Sbjct: 279 TAATLNLLGGGSLEETQQLLRHSDINTTMVYLHHLERE 316


>gi|325956998|ref|YP_004292410.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325333563|gb|ADZ07471.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 373

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/349 (9%), Positives = 81/349 (23%), Gaps = 47/349 (13%)

Query: 16  TRHGKIIYYFRKGHG---------------RRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            + GK  +Y R                   ++              Y   +  ++     
Sbjct: 5   KKRGKT-WYVRFSKRETSWNPEKQQHVSVLKQKSKGGFKTKAEAQQYGIKMEAAS----I 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                         + ++ ++    + +  +   +    + +    GD   + IT    +
Sbjct: 60  SGIDVTNNPVFADYMQKWFETYKKPNCSPATSTKYNYEINLVRNYFGDLTIKDITRTKYQ 119

Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIR 172
             +   ++KH P +  +   S+R     A+    ++ +    V+    K      T    
Sbjct: 120 EFINFTAKKHAPVTVKKLNGSVRACVNSAIIDGLISADFTKQVQVHGNKDKELAVTYLNI 179

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKT 229
              K   Q   S        R      +++G R  +        +          K+   
Sbjct: 180 EEIKRLTQTTISNLDITIPSRYMVLTAIFTGARLGEISGLQWNDIDFANNIIDINKSWNW 239

Query: 230 GTIITVELPD--------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                    +                +  L              +     +   +   ++
Sbjct: 240 QRKRMGPTKNKSSIRKIKVNDFLLERLNDLRANNCKFVFGNPAENNLPPTSATANSTLRS 299

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               A +NK    H +R                +    G   V     Y
Sbjct: 300 LLKDANINKDIHFHSLRHIHVAYLIKKHVDIVAISQRLGHSNVATTLKY 348


>gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7]
 gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7]
          Length = 335

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 94/300 (31%), Gaps = 44/300 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS---------GDFDYRKIT------------- 115
           Y +          +  ++       +R            +  + ++T             
Sbjct: 19  YMQLVKARG--DRTVEAYYIDLRSFLRYLRIKHKDIDTNNVPFEEMTISEVPFEYVSKLR 76

Query: 116 ----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEG 170
                 +++   + R ++  +  +  ++++  + +   ++  +  +P   +E PK     
Sbjct: 77  LIDAYDYLKWLADERSNSVKTRARKTSALKQFYSYLYLKKNSIPSDPLTQLELPKLPKTL 136

Query: 171 IRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227
            +  + ED Q+  S        +        L  G+R S+ C   +        +I+   
Sbjct: 137 PKYLSLEDAQRLLSSIESDHFERDYCMITLFLNCGMRLSELCGLDIGDFSFESGTIRLFG 196

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKA 280
           K      V +    +  L      + +           N   +++  +     +    KA
Sbjct: 197 KGQKERVVYINQACIAALKAYLPIRLSVQTQEKALFLSNRNTRISRRRTQEIVEESLKKA 256

Query: 281 GVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335
           G+     + H +R  +AT+    G      L    G +++   E YT  ++  ++   + 
Sbjct: 257 GLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQAAEA 316


>gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 82/307 (26%), Gaps = 39/307 (12%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
              +  + +       L+ ++  ++      ++               +    +R  + +
Sbjct: 2   GAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLAA 61

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     + S+  +   S R    WA R E +  +P   +  P  K +       E  +  
Sbjct: 62  QHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSA 121

Query: 183 KSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTII 233
            S    G         +     E L  +G+R S+ C   +  + +    ++         
Sbjct: 122 MSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKER 181

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAG-- 281
            V         ++            +               +                  
Sbjct: 182 AVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGA 241

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +   HG+R  +AT   + GA    +    G  T+   + YT              R+ +
Sbjct: 242 TDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT---------VERLKA 292

Query: 342 VVDSDDP 348
           + D   P
Sbjct: 293 IHDRTHP 299


>gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479]
 gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479]
          Length = 406

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 107/391 (27%), Gaps = 65/391 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             + + +   G     +   +G+R    +            A                  
Sbjct: 12  KGIYQRKD--GLYSARYYSKNGKRKERYFETLPEAKNWLADARYEERHNL----IVTSPD 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127
            T+    + + ++     LA N++ +++  +   I    G      +   H ++ +   +
Sbjct: 66  MTVDKWFTYWIENI-VCDLAPNTKRNYQERYKWNIQPVIGAMCIADVKPMHCKAVLNRME 124

Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFK 183
            T   S+  Q   +M  + K AV  + +A +P   V    P R  + I+  T E+ ++F 
Sbjct: 125 TTYAGSTIRQAYITMGTMLKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFL 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239
                 S     +  LL +GLR ++        +     ++   K+      +       
Sbjct: 185 EAA-ARSHNYRQYALLLETGLRTAEMIGLTWDAIDWKNRTLTVNKSLEYRHSQGYWRAGP 243

Query: 240 -------------------------------------GFMKLLA-------MTPIGKETF 255
                                                  ++ +           +    F
Sbjct: 244 PKTQKSYRTIPLTDKAYSILKSCYDEKDSRKSSETLSQVLEYIDSRTGENKCLIMRDLVF 303

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                 +    + +         +AG+ +   H +R   AT + + G     L    G  
Sbjct: 304 VNWRTGEPAKNSSYDTHLYKLCDEAGIKRFCMHALRHTYATRAIERGVQPKVLQQLLGHA 363

Query: 315 TVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           ++      Y    D     +   R+      
Sbjct: 364 SIKTTMDRYVHVTDES--LVNAIRQFQQATP 392


>gi|193064166|ref|ZP_03045250.1| prophage DLP12 integrase [Escherichia coli E22]
 gi|218557442|ref|YP_002390355.1| integrase; DLP12 prophage [Escherichia coli S88]
 gi|256023847|ref|ZP_05437712.1| putative integrase; DLP12 prophage [Escherichia sp. 4_1_40B]
 gi|260842731|ref|YP_003220509.1| putative integrase [Escherichia coli O103:H2 str. 12009]
 gi|300925815|ref|ZP_07141669.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|301327810|ref|ZP_07221004.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|192929195|gb|EDV82805.1| prophage DLP12 integrase [Escherichia coli E22]
 gi|218364211|emb|CAR01876.1| putative integrase; DLP12 prophage [Escherichia coli S88]
 gi|257757878|dbj|BAI29375.1| predicted integrase [Escherichia coli O103:H2 str. 12009]
 gi|294493655|gb|ADE92411.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|300418109|gb|EFK01420.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300845647|gb|EFK73407.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|320201465|gb|EFW76045.1| Phage integrase [Escherichia coli EC4100B]
 gi|323160889|gb|EFZ46814.1| prophage DLP12 integrase [Escherichia coli E128010]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E  +     +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPEPLKS--VVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 372

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 80/305 (26%), Gaps = 19/305 (6%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
             + + +     S         +     RK   T+    + Y +   W     + +    
Sbjct: 47  EGYTAAYASDVRSERVRDIRHGKSSPQGRKGELTINDAWALYLE--KWLHGKPSEQSDEA 104

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQ-EYV 153
            Y   +    G      +    I         + +P +    L  +R +++      EY 
Sbjct: 105 LYRLWLAPAFGMKKMAGVRPVDIEEFKNRMLAQRSPQTVKHALGLLRRVYRKMAAWGEYK 164

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRA 212
              P +SV  PK     +R  T ++  +      + S          L++GLR  +    
Sbjct: 165 GDIPTVSVPMPKVDNGRLRFLTPDEAVRLVEALRKRSVLWADVSLVSLHAGLRLDEILGL 224

Query: 213 GVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
              H+          +              +       K              N ++   
Sbjct: 225 QACHVDIDNRLLHVMDAKCGTRTVPLADRGLCEMLRQRKAACSGAEDFVFKNRNGERINN 284

Query: 265 NATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +       +      G+         H +R    +  A  G   + +    G  T++  
Sbjct: 285 ISQTVVRVIQDLGFNHGITDRRHKVVFHTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMT 344

Query: 320 ETYTK 324
             Y+K
Sbjct: 345 RRYSK 349


>gi|215401172|ref|YP_002332477.1| integrase [Staphylococcus phage phiSauS-IPLA88]
 gi|215260399|gb|ACJ64530.1| gp1 [Staphylococcus phage phiSauS-IPLA88]
          Length = 354

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 101/352 (28%), Gaps = 30/352 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK  Y F     R  +  +  +   + A   A                  T+     ++
Sbjct: 8   KGKWYYDFGHKGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130
           + K    G +   +  +F++  +Q           +     + T   R  ++     H+ 
Sbjct: 63  WIKVNKEGVITDKAYANFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +    ++     A+++  +  +P   V      P ++ E      K+ +   +   
Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239
           +   Q  L    L+ +G R  +  R     L     +I    T T        I      
Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                LA  PI   T   N     +     +   +    +  +   + H +R    +   
Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344
               + + +    G K++      Y+   D          +     ++  ++
Sbjct: 303 HNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354


>gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483]
 gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 390

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  ++ +++     SL  ++R +  S  + +     +  +  +T + + S     +    
Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165

Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      ++            + K           E++ +F++   
Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   RL     AF F  Y+GLR SD       ++                 +E+     
Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297
            L     I     + ++          S   K     AG+       S H  R  +AT+ 
Sbjct: 286 LLFEGKGIQILQRYKDDFNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA    +    G K+V   + Y    D
Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|268611875|ref|ZP_06145602.1| hypothetical protein RflaF_20511 [Ruminococcus flavefaciens FD-1]
          Length = 465

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 114/417 (27%), Gaps = 79/417 (18%)

Query: 4   SLRLPPFVTKERT--RHGKIIYYFRKGH--GRRIR------LPYPHESTFIPAYMSALTG 53
              LP    K  T  ++GK    F      G+R R      LP       +   + A+  
Sbjct: 2   KASLP---YKYITSVKNGKHYVVFDYKDHSGKRKRKWVNTELPEKCSKKALKEAVEAIVA 58

Query: 54  STPK----------------REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE- 96
              K                   ++        L    +E+       ++A  + + +  
Sbjct: 59  EFDKSISEGEIAVKSANAVPYAVMSDETASTMLLDDFFTEWLTYIKP-NVARTTHLCYRK 117

Query: 97  ---SYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
               Y + I     +    ++   HI++ +  +       S+A Q+  ++   F +AV+ 
Sbjct: 118 VSKRYMEYINENYPNLTLGQVNHNHIQNYLNYKLDSGCKGSTAKQYYLALHSAFAYAVKM 177

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           E +  +P   +  P+ +      +   D         +G +  L      Y GLR  +  
Sbjct: 178 ELIPKHPMDKLVVPRAERHEA-TFYNADELNELFEVFKGDKLELVVNIAAYYGLRRCEIL 236

Query: 211 RAGVQHLQNNIFSIKTQK----------------------TGTIITVELPDGFMKLL--- 245
                 +     +I  Q+                        T  T+ L     ++L   
Sbjct: 237 GLRWDAIDFKNKTITIQRKIVSDYDDNGEIKIFVETRLKTNSTRRTLPLIPHIEEMLLEK 296

Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
                        +           +N    ++    +  F    T+ G+     H +R 
Sbjct: 297 KKMEVKFKKACGKSYNKEFDGFICRDNYGNMISPGYVTQHFHYIITRNGLKHLRFHDLRH 356

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL-GIKNSRRISSVVDSD 346
             A++          +    G          Y+      ++   +   R+      D
Sbjct: 357 SCASLLLAHDVPMKAIQEWLGHSNFSITANLYSHLEYNAKVNSAETIARVLGGKSED 413


>gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666]
 gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666]
          Length = 331

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 85/292 (29%), Gaps = 33/292 (11%)

Query: 66  KKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115
           +  +TL   I  +         +LA N+R S+     Q++                  ++
Sbjct: 2   RDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVS 61

Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--- 168
            + +R         R    ++  Q L ++  L ++        I  C  V     K    
Sbjct: 62  PQLVREFLSDVETHRGCGIATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQ 121

Query: 169 ----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                  +      +        +G +      FL  +G R S++    V  L  +  S+
Sbjct: 122 ASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQASV 181

Query: 225 KTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                G               ++ L       E  F+N   Q           +  A +A
Sbjct: 182 DILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAARA 241

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                       S H +R  +A+    AG   + + A  G  ++D    Y +
Sbjct: 242 KDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAE 293


>gi|71275473|ref|ZP_00651759.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71902062|ref|ZP_00684102.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71163773|gb|EAO13489.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71728173|gb|EAO30364.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 339

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 100/329 (30%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++         +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAEHYRAEVIPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +   A + ++    L+ W   +     +        +R     R    +D      + 
Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  +       + T     F      AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEIFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 115/357 (32%), Gaps = 47/357 (13%)

Query: 11  VTKERTRHGKIIYYFRK----GHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSP 64
           +   + + GK  Y F       +G++++             A    L  + P     +  
Sbjct: 12  IKPYKLKSGKKRYMFYIYLGQKNGQKVQTFRRGFKSYEEADAVYKQLAATNP----QDFV 67

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           ++K  T+  L +E+ K      +  ++ + ++E Y   I  + G+     +TTK I    
Sbjct: 68  KQKQYTVDQLWNEWFKRY-VLDVKPSTAQKTYELYNLHIKPEFGESYVDSLTTKTISDYF 126

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S              +  L ++AV  E +  NP  S   PK+     R  +       +
Sbjct: 127 YSLAKEYKRYRTVFNYLHKLLEYAVDIELINRNPARSSLLPKKSAVKGRDTSHNFYTLDE 186

Query: 184 SFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
                 +   ++ +   Y      +G+R S++             +I  Q+T        
Sbjct: 187 LKLFLDTAKEISDQVYFYFLILATTGIRKSEAIALHWSDFDYEHKTIHIQRTTAYKLKIK 246

Query: 230 -----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                 V + D   ++             +N K     +  +  
Sbjct: 247 GNGEIETNDYGTQIPKGNETRIVPMSDLVYEISLHCRKDLNPLVFHNTKGDYYRSSKADK 306

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
           +K +  +        + HG+R   ATI+ D G    ++    G K++D    TYT  
Sbjct: 307 WKKQIYEKNPNLKKITVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLTLGTYTHT 363


>gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 90/311 (28%), Gaps = 37/311 (11%)

Query: 74  LISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGV 123
           LI  +   + A   +++ ++  S+   F   ++ +         D        + + + +
Sbjct: 8   LIERFFGQRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDAELVVAFL 67

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTK 176
           +     R  +P++    LT++R  F++   +E         +     K      ++  T+
Sbjct: 68  DDLDSERHASPATYNLRLTAIRSFFRFLAFEEPAYSGQIQRILAIPGKIGSKREVQFLTR 127

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---- 228
            +++   S        G +  +     + +G+R S+        +     +         
Sbjct: 128 SEIEAILSAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGR 187

Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKS 285
               T IT  L       L   P+G     F      +M+              A    S
Sbjct: 188 KERTTPITRMLNVTLKAWLDEPPVGNGNALFPTVHGGRMSPDAVQYLLAKYVLTASKGCS 247

Query: 286 --------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
                    H +R  +A    DAG  +  +    G ++    + Y           +   
Sbjct: 248 SLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAALAKI 307

Query: 337 RRISSVVDSDD 347
              +       
Sbjct: 308 DPFNGQSPGRF 318


>gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 359

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 100/337 (29%), Gaps = 26/337 (7%)

Query: 15  RTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R + G   +Y+    +G   R  L      T   A +            + + R+     
Sbjct: 6   RKKDGIKTWYYDFTLRGKRHRGWLKPTSAMTKRQASIRLRKLKAKILGDLPARRRTRIKG 65

Query: 72  KWLI-------SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             L         EY K+        +     E  F      +             +    
Sbjct: 66  AALFKLIFNEYEEYLKTHKPR----SYYGRMEYMFSNFEFFTKKNAISAADISKYQKLRA 121

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
           S+  + ++  + L      F  AV +  +A+NP    ++ +      R  T++++ +F  
Sbjct: 122 SQGVSGTTINRELNYCDAAFNRAVSRNMIAVNPFTGFDKFEELE-RTRFLTEDELVRFLR 180

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----V 235
               +  +    +      + +GLR           +  N+  I               +
Sbjct: 181 AAAYYEIQAPHLKAVVLTAILTGLRKRAILTLHKGEINFNLGLIIKFPGQASRNKRAGVI 240

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAHGVRKFS 293
            +PD  + +L       ++ ++  +             FK    KAG+ +   H +R   
Sbjct: 241 PIPDDLVDILKSRIEQSKSGYLFENPNTGQPMRDVKKSFKKALKKAGIEDFRFHDLRHTF 300

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AT +         +    G K +   + YT    R +
Sbjct: 301 ATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREK 337


>gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp.
           aureus D139]
          Length = 390

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 102/387 (26%), Gaps = 56/387 (14%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              R     Y    G     G+   +          A   A       R          +
Sbjct: 4   YEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRN-GEYIAPSTS 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T K +  ++  S +   + V+S  + E      I +  +   + I     +  V     +
Sbjct: 63  TFKQVADDWI-SQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISIQ 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183
           ++ +     +TS  ++FK+A   + + I P   ++RPK+K         E  ++F     
Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------- 222
                               F  L Y+G+R  +        +                  
Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241

Query: 223 ------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                                      ++     D          +     F + +   +
Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
              +  +W K    K  +     S H  R     +  +AG    E+      K ++    
Sbjct: 302 VIKKLQLWIKVILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSD 346
            Y K  +   +   +   ++   V  D
Sbjct: 362 IYAKITNSYKKDASQKFSKLMENVSKD 388


>gi|268610359|ref|ZP_06144086.1| phage integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 347

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 91/347 (26%), Gaps = 34/347 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M  + +LP          G           ++  + +  +         A          
Sbjct: 1   MAKAKQLP---------SGSWRVQVYDKDLKK-TVSFTSKLPGKAGRNEAELMGREYLAG 50

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                ++  T+   I EY        L+  +   +  Y    +    D   + IT + I+
Sbjct: 51  KKRKEEQGKTIGEAIDEYIA-LKENILSPTTINGYRKYRKTSLDGLCDILVKDITQQDIQ 109

Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +       +P S       +  +      +  +        ++ K+            
Sbjct: 110 AYINRLALTMSPKSIHNAHGLLSAVLSVYAPELRLRTTLPKVQKKIKQLPPVEDVL---- 165

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTI 232
                     G++  L     ++  LR S+        +Q       +            
Sbjct: 166 ------KAIIGTEIELPCLLAMWCSLRMSEIRGLRRSDIQGNILTVQSTIVNVDGDHIEK 219

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV-NKSAHG 288
            + +  +   ++     I      +  D++ +         + F     + G+ + S H 
Sbjct: 220 DSTKTLESTRQIRLSHYIISLINALPEDQEYITLIKDHALYMRFTRLLKREGIQHMSFHD 279

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIK 334
           +R  +A+I    G      M   GW T    +  Y       R    
Sbjct: 280 LRHMNASIMLALGIPDKYAMERGGWSTNSTLKNVYQHTFSAERKAAD 326


>gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1]
          Length = 303

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 14/276 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 19  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 79  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242
                 +   A +   ++GLR  D  R    H+ +N   +     +      + L     
Sbjct: 139 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           AG +   +    GW+         +   R    I+ 
Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 291


>gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 330

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 12/276 (4%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--- 115
           +      +   T   L+  +  +         +   + S   Q+++K         T   
Sbjct: 40  KDGERVHEDTATNDRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKKVVDYSTEDI 99

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             ++       K +  +           F W   ++Y+  +P   + + K  T+     T
Sbjct: 100 RAYLAVFQRKNKSSKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILT 159

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIIT 234
            E+++          +     + L  +G+R  +  +   + +  N    I   K      
Sbjct: 160 DENIEH-LRDNCIKIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERI 218

Query: 235 VELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
           V         L      ++               ++  +      +    +A +     H
Sbjct: 219 VYFNARAKIHLQQYLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPH 278

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    ++    G   +D    Y 
Sbjct: 279 KFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYA 314


>gi|307710136|ref|ZP_07646580.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307619116|gb|EFN98248.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 116/371 (31%), Gaps = 53/371 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
           + + + ++G  +Y         K  G++I+        T +               +   
Sbjct: 3   IAEIKKQNGSTVYRAKVYLGVDKLTGKKIKSNLTARTKTELKKKAQLAKAEFQNNGFTKK 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
                T+ + +   + +S    ++  N++ S +    + +I   G +   K+TT  I+  
Sbjct: 63  EIIPLTSYEEVAQLWWESYQ-HTVKPNTQDSVKRLLSNHVIPLFGSYRLDKLTTPTIQRI 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           V       +           +     + + ++AV  + + +NP   V  P++  +G    
Sbjct: 122 VNQLALRANKREEGAFLHYDKIHALNKRILQYAVTMQIIDMNPAREVILPRKIKKGRNKV 181

Query: 175 TKEDMQQFKS----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------- 217
              +  + K                      ++FLL +G R +++       +       
Sbjct: 182 KHFNNLELKQFLSYLEEANLAIYRNIYEITLYKFLLATGCRINEALALHWSDIDLNNATV 241

Query: 218 ------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NND 260
                  +       +   +  T+++    +++L +    +                +  
Sbjct: 242 NITKTLNHLGEINSPKSEASYRTIDIDPQTIEVLKVYQKRQRQEAWKLGRTETVVFSDFI 301

Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +  N    S     +   AGV     HG R   A++  ++G    EL    G  T+   
Sbjct: 302 HKYPNNKTLSTRLNTRFKHAGVPNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLAMT 361

Query: 320 E-TYTKGADRI 329
             TY+  +   
Sbjct: 362 MDTYSHLSKEK 372


>gi|260431818|ref|ZP_05785789.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415646|gb|EEX08905.1| integrase family protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 87/347 (25%), Gaps = 36/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + K     G + +        G+R    +P        Y+  L        Y+       
Sbjct: 4   IRKRTLPSGLVRWQVDFTDQAGKRRSKLFPRRKD-ADVYLVKLRSLVANNTYLADSES-- 60

Query: 69  TTLKWLISEYRKSAHWG-----SLAVNSRISFESYFD-QIIRK---SGDFDYRKITTKHI 119
            T+      +             +  ++   +  Y    I       GD    ++T +H+
Sbjct: 61  ITVADAAKAWLDHCEVRCKTGRRMERSTLRGYSDYVRLHITDAQIGIGDKLIVQLTRRHV 120

Query: 120 RSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +       S     + L+ ++++   A+    +  N    V   K      +    
Sbjct: 121 NEFRDRLLLNGRSEHLTRRALSVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIDYKAPVP 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFS 223
                     +     +        +G+R S+      Q +                   
Sbjct: 181 SKETIRALIEAADDDFKPHLIVSALTGIRASEFRGLRWQDVDFEKGFIYVRQRADAYNQM 240

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKAT 278
            + +       +      +  L    +      +                    F+    
Sbjct: 241 GEPKSRAGYRDIPAGPMVLNALRRWKLRCPKSDLGLVFPAPRGGVLQHTRTQARFRKLQE 300

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           + GV    H +R F+ ++  + G +  E+M   G  ++      Y  
Sbjct: 301 QVGVKLRWHDLRHFAVSLWIEQGFSIKEVMTFAGHSSIQMTMERYGH 347


>gi|124515604|gb|EAY57114.1| putative phage integrase [Leptospirillum rubarum]
          Length = 358

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 104/354 (29%), Gaps = 30/354 (8%)

Query: 17  RHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G   +    +  G   +    +      A+         +  +I+    + TTL   +
Sbjct: 6   KRGPYQWQVLIRRKGFETQARVFNTKAEAEAWAQVTESEMVRGVFISRKAAENTTLDEAL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y  S    S    +        +    K        I  K I    + R  + S A  
Sbjct: 66  DRY--SQEVSSKKKGAYQESRRIENLKRHKLAKRYLASIQGKDIAEYRDERLKSVSQASV 123

Query: 136 FL--TSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190
            L    +  LF  A+R+  +   +NP   +  PK+     R   + + ++  +   E G 
Sbjct: 124 RLELALLSHLFNTAIREWGMNGILNPVTQIRLPKKAMSRDRRLFQGEEEKLLASCDEYGG 183

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT 248
                    L +G+R  +       ++     +      K G    V L    +++L   
Sbjct: 184 DLPYVVRLALATGMRRGELASLTWDNVDLKKRTATLPETKNGEKRIVPLSQEAVRILRDL 243

Query: 249 PIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGV--------NKSAHGVRKFS 293
           P   +             T F          ++ +  + G+        + + H +R  +
Sbjct: 244 PRRFDGMVFGFVDSHSITTAFIRSVSRARSAYEKECAEKGIKPDPGFLVDLTFHDLRHEA 303

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +   + G     +    G KT    + YT            + ++  + +   
Sbjct: 304 TSRFFELGLDTPFVKKITGHKTYQMLDRYTHL-----RAEDIAEKLDQLKNLKR 352


>gi|323136539|ref|ZP_08071621.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398613|gb|EFY01133.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 419

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 102/326 (31%), Gaps = 16/326 (4%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
             P          +    +  +     +   +  T+  L+  + +       +  +  + 
Sbjct: 87  KDPAAEKREAKRQAKAEIAKQREAKRQAKTPQRETVAELVDGFLQRMS-RKASPKTVDAT 145

Query: 96  ESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYV 153
                + ++   G     +++   +R+ +E      P  A + L+++R LF  AV +E +
Sbjct: 146 GRLLRREVVAAWGARPIAEVSRADVRALLECVGERAPVMANRLLSTVRRLFAHAVDEELI 205

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           A NP   +E P  +T   R     ++            +       L+ +  R S+  R 
Sbjct: 206 ARNPAAGIEPPHAETPRERVLDGRELASVWCAAERLDGEDGDFIRLLILTAARFSEVARL 265

Query: 213 GVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFS 270
             + +  +                 +       L +           +    + + ++  
Sbjct: 266 EWREVDLDNGVWTLPAARAKNRKAHVTPLSAPALRILQRLHAARVTDDGRVFRSSFSRIR 325

Query: 271 IWFKAKATK---AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYT 323
               A+  +   A + + + H +R+ +AT     G  AH +       +         Y 
Sbjct: 326 DRIDAEIARFDGAPLAHWTPHDLRRTAATNLQSLGVAAHVVEKLLNHASGTFRGIVSIYQ 385

Query: 324 KG--ADRIRLGIKNSRR-ISSVVDSD 346
           +       R  ++     I+++  ++
Sbjct: 386 RHEYFAERRDALQALAAHIAALTGAN 411


>gi|331681924|ref|ZP_08382557.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli H299]
 gi|331081126|gb|EGI52291.1| prophage DLP12 integrase (Prophage QSR' integrase) [Escherichia
           coli H299]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRAEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 391

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 94/376 (25%), Gaps = 49/376 (13%)

Query: 18  HGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +G      Y  +    +I  PY    T      +    +       +  + K T L  L+
Sbjct: 12  NGIWCCRLYLGRNLNGKIIQPYASFPTAKTQKEAEELATMWASHITSDGKVKSTQLTDLL 71

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            EY         + N+    E +    I  + G  D R IT+    S  +       S  
Sbjct: 72  LEYVSIKRRNGASPNTTRQHEGFIRNHINGRLGKEDVRSITSSLFTSFEQDLLKKGLSRN 131

Query: 135 QFLTS---MRVLFKWAVRQEYVAINPCLSVERP-----------KRKTEGIRPWTKEDMQ 180
             +     +R  + + V       NP ++V +P           +    GI       + 
Sbjct: 132 SVINLHQFLRGAYNYFVSAGICDYNPLINVAKPSREVHEAVSIEEWGFAGISTLINSRIT 191

Query: 181 QFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKT--------QKTG 230
                    S+   AF     L +G+RC + C      +      I           +  
Sbjct: 192 TAIQEDEFNSRVVCAFAAWLSLVTGMRCGEVCAIRYSDVNMLYKHIHVSGTVIEESYRKP 251

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------KMNATQFSIW 272
                        +                +Q                   M  T  S  
Sbjct: 252 YRRESTKGKRSRNIAITDSDISFISDYMKLQQAHIAFVESSTPLISLDGSYMRPTSVSRS 311

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-R 328
           F        + +  + H +R   A+    +G     L    G          Y+     R
Sbjct: 312 FTRMRRTLQLPQGITFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLRIYSHLLPGR 371

Query: 329 IRLGIKNSRRISSVVD 344
            R   +        ++
Sbjct: 372 DRGAAEAFGDALRTIE 387


>gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 411

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 106/342 (30%), Gaps = 54/342 (15%)

Query: 57  KREYINSPRKKPTTLKWLIS-EY--RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
           + E       +  TL+  I  E+  + ++   +L+  +  ++  + + +II   G  +  
Sbjct: 63  EAEAGEYIAPQKMTLRQFIESEWDPKYASKTENLSPLTYQTYMHFIESRIIPVFGHKNLE 122

Query: 113 KITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            I T HI + +                 +P +       ++ +F  A   + +  NP + 
Sbjct: 123 DIRTLHIVTFINDLSKPGVRKDRRDDTLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVG 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           V++PK +      + +++ ++  +  ++   + RL     +  G R  +        +  
Sbjct: 183 VKKPKVEQTEFDFYDEDEAREVIAALNKEPRRWRLFILGSMVGGFRRGELLALEWADVDF 242

Query: 220 NIF------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +                         K+   +         +L       K+      DK
Sbjct: 243 DNMTLSINKSISLTVDGRAVEKDPKSKSSKRVVDMPEWYMQELKVHEREWKKEKLFMGDK 302

Query: 262 Q---------------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
                               T  + W+++  ++  +     H +R  SAT+  +AGA   
Sbjct: 303 WLGGDRQYVFHAGYGKPFFHTTPTKWWRSFISRNKLKYIRLHDLRHSSATLLIEAGAPMK 362

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
            +    G          Y       ++    + +      ++
Sbjct: 363 AIQKRLGHSKHQTTADIYAHVT--KKVSRDTAEKFDKFAPNN 402


>gi|15088744|ref|NP_150133.1| integrase [Streptococcus phage MM1]
 gi|15074890|emb|CAC48067.1| integrase [Streptococcus phage MM1]
          Length = 375

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 117/373 (31%), Gaps = 52/373 (13%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKW 73
           +GK  ++ R       +  ++    E     A   +A+       + +++ + +  T + 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKINKKLSTKQVESITFEE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS- 131
           + + + KS    ++  +++ + +S   ++      D     +  + ++  +E    +   
Sbjct: 68  IYNLFYKSW-AQTVKESTKHNCKSVDKKMKEVIPSDTILANLDRRFLQEAIEKIIESNGY 126

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSE 188
            +A +    +R +F +AV+  Y+  N       P++         K +      +     
Sbjct: 127 ITAKKVRHRLRGIFNYAVQYSYIENNEVDYTTIPQKPKTLEELEKKRNNFLTMQEIKALV 186

Query: 189 GSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
               R  +             +G+R  +     ++++      I+               
Sbjct: 187 DVLNRREYHQKYADMVLVLTLTGMRYGELTALQLKNIDFETNKIEITGNFDSVNKIKTLP 246

Query: 233 ------ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKA 275
                  T+++ +  ++ +    +               F      Q      F    K 
Sbjct: 247 KTTNSIRTIKVSESVIEAIQRQIVRLSERFQPLSSDDYIFCFEKWNQPTTIACFIQILKK 306

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
              +A + K  S+H  R    +  A++G     +M   G        E Y+   +     
Sbjct: 307 YGKQAKIEKNLSSHIFRHSHISFLAESGLPIKSIMDRVGHSNAKMTLEIYSHTTE----- 361

Query: 333 IKNSRRISSVVDS 345
                ++ + +D+
Sbjct: 362 -DMEDKLVNKLDT 373


>gi|323700549|ref|ZP_08112461.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323460481|gb|EGB16346.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 340

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 11/332 (3%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           T+ G+    +R  H +  +  Y    +    A           +      R     L  L
Sbjct: 6   TKDGRWFVQYRVAHSKSPKKEYYGKGTEAKKAAHERNAEINLMKARKEEIRTGHIYLDEL 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
              Y                  +  +   +         K+  +            +PSS
Sbjct: 66  GQIYLNHEKARGRERKFLTEMANRLNNSYLPALNHAPIHKLKAEDFNVLALEYADLSPSS 125

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +++T + V+F + V  EY+  NP  +  +   K E  R    +               
Sbjct: 126 FNRYITYLNVMFNFGVEFEYIEKNPMAAWRKRVLKREKHRDLPIDKDDIDAILAHSPLHV 185

Query: 193 RLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             A   ++ +G R   S   +     +  +   ++ + T    +         +L     
Sbjct: 186 YKAIRLIMKTGCRPGKSELLKIKYSDVDFHNKLVRIRGTKAARSDRYVHLLDDILEEIRE 245

Query: 251 GKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306
            ++T       + +      +   F+     +G++K    + +R + A+      A    
Sbjct: 246 WQKTATSEYIVEYKGEPVQSYIKAFRTAVKNSGIDKKVVPYHLRHYFASSLIAKKADIKA 305

Query: 307 LMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
           + +  G          Y     D  +  I+  
Sbjct: 306 VASVMGHSGPAMLFNVYYHLIGDGEKEAIEKL 337


>gi|212702736|ref|ZP_03310864.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
 gi|212673793|gb|EEB34276.1| hypothetical protein DESPIG_00764 [Desulfovibrio piger ATCC 29098]
          Length = 350

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 110/354 (31%), Gaps = 26/354 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK--------REYINSPR 65
           E+ R  K  + +R     R R       +   A+ + +     +        R+      
Sbjct: 2   EKDRLEKWRFSWRDPATGRTRRRTFTSESERDAFAATMRQVIERERQLKKQARQRSARIS 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T++ +I  Y +          ++ +   +   ++   G    R +T + + +  E+
Sbjct: 62  AQSLTVREIIQLYLELQITR---PGTKKATAYHCRPLLAMFGTRKARMLTMQDVLAFREA 118

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              R+   S+    L  +R   +WAV    +A NP   ++ P+ ++    P T  + ++ 
Sbjct: 119 QALRQVGLSTVRLRLGILRSALRWAVTTGRLAANPLDGMKLPRVRSRRASPPTAAEGRKM 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVEL 237
               +   +  +A        +  S+  R     +  +   +               V L
Sbjct: 179 MEVAAPHIRRIIAIGMYCGPRIGPSELFRLRWADVDLDAAQLNMPSASKADGPDGRFVPL 238

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS--AHGVRKFS 293
               + L+                             + +    AG+ +    + +R   
Sbjct: 239 RGDLVALMRRWQDEDSAIGCPWVIHYHGRPVKSVGAAWHSARRAAGIQRRIVPYSLRHAF 298

Query: 294 ATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVDSD 346
            T++ + GA    L    G  +     E Y        L     +R+ S++  +
Sbjct: 299 PTMALEHGADIGSLAEIMGHTSKSMILEHYQHVT--AHLKRDAVQRLPSILPEE 350


>gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 407

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 86/310 (27%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
               +E     +    T   L  ++ +        S++  +   +E              
Sbjct: 92  LERIKEEFLGKKGDIDTFMALFEKHNEDFRKQVGVSVSATTLRKYELCKRHFAEFLKQKY 151

Query: 108 ---DFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   I       +        +A + +   + +     R+  V  +   +
Sbjct: 152 SRTDIKLCELTYTVIYDFDLYLQTAAGQCRNTATKTMKIFKTI-TILGRKLGVLHHDPFA 210

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D      +HL
Sbjct: 211 NYHFHLEFVDRGFLTDEEILKIVNKKLTIPRLSLVRDIFIFSCFTGLSYIDVANLTPEHL 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
            N               VE     + +              + K     +  + + + K 
Sbjct: 271 VNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNKTYRDSKLFPVLSNQKMNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A    + K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICDIGKNLTFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 390

Query: 332 GIKNSRRISS 341
             + + ++S 
Sbjct: 391 MEELAGKLSK 400


>gi|293602012|ref|ZP_06684467.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292819542|gb|EFF78568.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 372

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 104/355 (29%), Gaps = 34/355 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  T++  
Sbjct: 6   KTSSGTWKALIRKTGWPA-TAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPAERMTVEAA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           ++ Y K         +++         IIR  G +    +  + +    + R        
Sbjct: 65  LTRYLKEVTPTK-RESTQAGEHKKAQVIIRHLGKYSLAALNAEIVAQFRDMRLAGDPDKK 123

Query: 127 -KHTPSSAIQF---LTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ 180
            K  P S       L  +  LF  A+++  +    NP  ++ RP   +   R  T E+  
Sbjct: 124 GKLRPRSNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGSGRNRRLTSEEQT 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL----------QNNIFSIKTQK 228
           +      + S P   +   +   +G+R S+     ++ +               S +T  
Sbjct: 184 RLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERRVVRLEHTKNSSPRTVP 243

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
                T    +     L         F             F   +      AG+ +   H
Sbjct: 244 LTAEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKAWTDAKRAAGLEDFRFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            +R  + +   +AG +  E+ A  G K++   + YT             +++  +
Sbjct: 304 DLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVQKLDRI 353


>gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
 gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1]
          Length = 308

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 71/274 (25%), Gaps = 24/274 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
             ++     +    + ++  S+     +                  TT    + +  +  
Sbjct: 9   ADDFADYLRFERQSSDHTVRSYARALAKWRSWCETSGADPMSPDDATTPRFIAAMREQDL 68

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186
             S+  Q + ++R   ++       A +       P +     +  +  ++ +       
Sbjct: 69  ASSTVQQTMAALRSWVRYRQSTGSAAASALRLPALPDKPRRLPQVLSDGEIDRLLESCSG 128

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243
                 + R   + L   GLR S+ C   +  +  +        K     +V        
Sbjct: 129 ESWMDVRDRTILQILADCGLRASEICSLTLASVDMDTRFLHVRGKGNKDRSVPFGASVAD 188

Query: 244 LLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV---NKSAHGVR 290
            L      +                    ++         + +  +AGV       H +R
Sbjct: 189 WLTKWLAVRADGHPTGGARSFLFASRTGDRLTRIDLWRLIRRRGERAGVAKARLHPHVLR 248

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT     G     L    G  ++   E YT 
Sbjct: 249 HSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTH 282


>gi|330812148|ref|YP_004356610.1| putative phage integrase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380256|gb|AEA71606.1| putative phage integrase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 377

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 114/353 (32%), Gaps = 31/353 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +         +  YI     +  TL+  
Sbjct: 27  KTPAGTWKAVIRKTGWP-TNAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERLTLEKA 85

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           + +Y +          ++ +  +   Q+IR  G +    ++++ I +  ++R        
Sbjct: 86  LQQYLREVSPTK-KPTTQRAEATKAQQLIRHLGKYSLAALSSEVIANYRDTRLGSLTNRG 144

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + ++    L  +  LF  A+++  +    NP L++ +P       R  + E+ ++  
Sbjct: 145 NPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGEGRDRRLSPEEERRLL 204

Query: 184 SFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITV 235
           +  +  S P L +     L +G+R S+        +      ++   T         ++ 
Sbjct: 205 AAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVRLSDTKNDSARTVPLSR 264

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KSAHGVR 290
                F   L      ++   +   +     K     F+  +     K G+     H +R
Sbjct: 265 LATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGVLKKKFGMPDLRFHDLR 324

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             + +   + G +  E+ A  G K++   + YT              R+  + 
Sbjct: 325 HEAVSRFVEGGLSDQEVSAISGHKSMQMLKRYTHL-----RAEDLVGRLDRIK 372


>gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16]
 gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16]
          Length = 308

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 91/301 (30%), Gaps = 33/301 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD-FDYRKITTKHIRSGVESRK 127
           T++ +   +++      +  ++  ++     + I+   G+ +   +   +          
Sbjct: 5   TIREISVAWKEYKQPY-VKQSTMAAYVLILENHILPNFGESYALHEQAVQDFVLRKIENG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L  ++++ K+ V+ E++              T+ +   +  + ++  S   
Sbjct: 64  MSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSPSITKELEVLSVANHKKILSHIQ 123

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              S   L     L +GLR  + C      +  +  +I   +T   I +         L 
Sbjct: 124 SHFSFAGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIINGMEKHTELV 183

Query: 247 MTPIGKETFFI--------------------------NNDKQKMNATQFSIWFKAKATKA 280
           +     +                               ND+       +  ++     K 
Sbjct: 184 INTPKTQNSCREIPITKELLAMVKPLKKVVNEEFYVLTNDEYPTEPRTYRNYYGKLMAKL 243

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
           G+ K   HG+R   AT   +AG     +    G   +    + Y     ++ +  I    
Sbjct: 244 GIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVF 303

Query: 338 R 338
           +
Sbjct: 304 K 304


>gi|227499698|ref|ZP_03929801.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227218295|gb|EEI83554.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 362

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 93/347 (26%), Gaps = 29/347 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +    T+ GK  Y F    G+          +   F     +       + +    P  K
Sbjct: 3   IYSY-TKDGKTYYKFNIYLGKDPLTGKEIRTNRQGFKSKKQAENAYLKLRTQTPTKPEIK 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T       + ++        +       + +QI    GD   ++ T    ++ +    
Sbjct: 62  IKTFNDAYEIWLETWQTTVKDQSVYKIKSLFKNQITPYIGDILLKEFTQLQAQTFIIDAS 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               +        + +  +A     +  NP   ++ PK+K E      +      +    
Sbjct: 122 KRYKNISSINIYTKAVLNYAKDLHAIETNPFAKIKIPKQKREIKTIENRNYYTPEELKTF 181

Query: 188 EG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                     Q    F  L ++G+R  ++       L     ++   K+ +         
Sbjct: 182 LEITKETQQPQTYAFFRLLSHTGMRLGEALALEWTDLNTKTNTLTISKSISRDKDGKQII 241

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                     + L       L       + +      + +  +           K  ++K
Sbjct: 242 STTKTGNTRKITLDRETTDTLIKLKKTNKKYIFERSGKMITRSYPLKILNRIIEKNNLHK 301

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            + HG R   ATI    G +   +    G        E Y+   +  
Sbjct: 302 ITVHGFRHTHATILLRMGKSIKYIQERLGHADPTITLEIYSHIMEEE 348


>gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 410

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 86/269 (31%), Gaps = 22/269 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK----HT 129
           +       A+ +   +ES    +           D    +I  + +R+     K      
Sbjct: 125 RELVGKDYALITVRRYESCKRYLAELIKLKYDKEDLPLSEINGELVRAFEFYLKTEKECQ 184

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFKSFW 186
            ++ I+++  ++ +   A+  E++  +P + ++    K       T +    +   +   
Sbjct: 185 QNTVIRYMKCLKKITNLALANEWITKDPFIGIKF-HEKEVIREFLTMDELLTIYNKEFSL 243

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----- 241
              +  R  F F  ++GL   D  +   +H+  +       +     T  + +       
Sbjct: 244 DRITVVRDVFTFAAFTGLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLLDIP 303

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SA 298
           M++L            N         + + + K  A   G++K  + H  R   AT    
Sbjct: 304 MQILEKYKSHPTCQKKNVLLPVPCNQKMNSYLKEIADLCGISKCLTTHTARHSYATSVCL 363

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             G +   +    G   +   + Y +  D
Sbjct: 364 ANGVSIENVAKMLGHSNIKMTQHYARVLD 392


>gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 313

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 20/275 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              +      +        R            + +R+ +   +  P     FL ++R  +
Sbjct: 42  RGYSPRGVRRYLQDLALWFRFLEARALPP-GPEAVRAILLEERWAPRRVQGFLAALRSYY 100

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200
           ++  + +     +P   + RPK           E++ +F    ++  + RL      FL 
Sbjct: 101 RYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLEALAQEKEARLLTALARFLY 160

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLL------AMTPI 250
            +GLR S++     +++          +          V L       L           
Sbjct: 161 GTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNKERLVPLSRTAQSALLELGPPQGNVN 220

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                      +  +A      F+  A +AG++    + H +R   AT   + G     +
Sbjct: 221 VFTFAQGRYRGRVPSARYVEAKFREAALRAGLDPRRFTPHKLRHAYATFLVERGVQLDAV 280

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G +++   + Y   A R RL  + + R+  +
Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-KEAASRLPDL 313


>gi|148807459|gb|ABR13530.1| site-specific recombinase [Pseudomonas aeruginosa]
          Length = 373

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 112/368 (30%), Gaps = 38/368 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G      RK                   +  +      +  Y+     + TTL+  
Sbjct: 8   KTPSGTWKAVIRKQGWP-TASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKA 66

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           +  Y +         +++ + ++    +IR  G +    ++   I    + R        
Sbjct: 67  LGRYLEEVTPTK-KASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTK 125

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPW 174
                       + ++    L  +  LF  A+++  +    NP L++ +P       R  
Sbjct: 126 YKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRL 185

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIK--TQKTG 230
             ++ ++     +    P L +   +   +G+R S+        +      +K    K G
Sbjct: 186 NPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNG 245

Query: 231 TIITVELPDGFMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
              TV L     +         +         F      +K     FS  +     + G+
Sbjct: 246 ESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGM 305

Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            +   H +R  + +   ++G  T  ++ A  G K++   + YT    R    +     I 
Sbjct: 306 TDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHL--RAEDLVTALDNID 363

Query: 341 SVVDSDDP 348
                  P
Sbjct: 364 QSRQGSRP 371


>gi|327439330|dbj|BAK15695.1| integrase [Solibacillus silvestris StLB046]
          Length = 380

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/358 (10%), Positives = 94/358 (26%), Gaps = 45/358 (12%)

Query: 16  TRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R     Y   ++   G+   L      T   A  +A    T   E   +  KK      
Sbjct: 8   KRGQSWQYTVSYKDKDGKHKTLRKSGFKTKTEAKNAATLVETEILEGNIAILKKQP-FHA 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
               +  +      +  +  ++++   +I    GD     IT    +  +     +    
Sbjct: 67  YFHRWYTTFK-KDYSKTTIAAYKATESKIANFFGDKAIHNITRFEYQEFISKLGESLNHG 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +  +    +R     A+  + +  +         +   K + + I     + + ++    
Sbjct: 126 TVSKTHKHIRACVTDALEDDLLKKDFTRKVIVSGIAPKKHEEKFINYSDSQKLLKYLVDN 185

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------- 235
            E           L +G+R ++               I   K                  
Sbjct: 186 IELGLENYMLILALTTGMRYAEILALQWTDFDFINGCITVNKQLEYKHQELTTNVLKNAS 245

Query: 236 --------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                      +   +       F+ N+  + +   + +   ++
Sbjct: 246 KFSLYKVSRTITLDKFTLELFEDLKNNESYIIDNHLNIIFYKNDIGKIITNDRINDVLRS 305

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              +  ++   S HG+R   A+I      +   +    G   +D    TY+     +R
Sbjct: 306 ILKRLNISPVISFHGLRHTHASILLYQRVSIVYISERLGHNNLDTTIGTYSHLVSELR 363


>gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612]
 gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612]
          Length = 336

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 99/291 (34%), Gaps = 39/291 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH--TP 130
           L  ++ +S     L   ++ ++    ++ +    G+   + I+ + I+  V   +   + 
Sbjct: 20  LFDKWLESK--NHLKAQTKRTYVQLINRYLRPVFGEKSVKTISEEDIQRFVSDIQKDLSA 77

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  +    +R +F+ A+  + +  NPC     P+++    +  + +D ++ ++   + S
Sbjct: 78  KTVHEVYRCLRAVFELAIENKIIERNPCEKTVLPQKEKVKAKALSIKDQEKIENALGQSS 137

Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +   +A    L  GLR S+      Q ++ N   +  + +   +     +  +  L    
Sbjct: 138 KALDIAILLALNLGLRLSEVIALRWQDIRFNENIVIIRHSMERVPTGDGNKTVAHLGTPK 197

Query: 250 IGKETFFINNDKQK------------------------------MNATQFSIWFKAKATK 279
                  I  + +                                N       FK +  +
Sbjct: 198 TQSSQRKIPLEFEFSKCLKEYFQKQTSVQKKPDAFVVGKKDGNSYNGRTVERHFKKRLKE 257

Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGAD 327
             +    + H +R   AT + ++G     + A  G   T    + Y   ++
Sbjct: 258 LMISETYTFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSE 308


>gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 360

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 52/298 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           L+  +         +  ++  +   F+Q +    D   R +T  H++   E  K  +  S
Sbjct: 51  LVRRWLAEK-----SARTQEEYARDFEQFVEFV-DLPLRYVTLGHLQEYREHLKDGYARS 104

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  + L++++ LF +  +  Y A N   ++  P  + +       E             +
Sbjct: 105 SQKRKLSAVKSLFTFGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALLRDERDLR 164

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDG 240
             +       SG R SD      + L++                   K G    V L   
Sbjct: 165 NHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAVTLYSK 224

Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS------ 285
              L+      +E+         +         + +Q     K  A +AGV  +      
Sbjct: 225 VWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTEKTGPE 284

Query: 286 ------------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                              H  R   A+ +   GA    +  T G ++++  +TY   
Sbjct: 285 GAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHA 342


>gi|116492513|ref|YP_804248.1| integrase [Pediococcus pentosaceus ATCC 25745]
 gi|116102663|gb|ABJ67806.1| Integrase [Pediococcus pentosaceus ATCC 25745]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/351 (9%), Positives = 92/351 (26%), Gaps = 32/351 (9%)

Query: 17  RHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++G       +Y   G  R                 + L     +   +     +  T  
Sbjct: 7   KNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVS-VREKVDQQDTFA 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +        ++  +   ++  ++ I    G+   + IT  + +  +      H+P
Sbjct: 66  EYFKNWYIFYKKPKVSKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYGQNHSP 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSE 188
           ++       ++   K AV  E +  +   ++E    +     +      +++   +    
Sbjct: 126 NTMKMINNCIKACVKNAVYDEEIKKDFTYNIELISNRDNVVQVEYLNVAEIKALLNSTIS 185

Query: 189 GSQPRL----AFEFLLYSGLRCSDSCRAGV--------------QHLQNNIFSIKTQKTG 230
              PR          + +G R S+                     +         T+   
Sbjct: 186 KLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKPTKNKS 245

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNKS---A 286
           +   +++ +    +L             N +     +   +   +A+  +  +N+     
Sbjct: 246 SNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINRRNFHF 305

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNS 336
           H +R          G   + +    G   +      Y    +  +      
Sbjct: 306 HSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAI 356


>gi|114799242|ref|YP_759022.1| phage integrase family site specific recombinase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739416|gb|ABI77541.1| site-specific recombinase, phage integrase family [Hyphomonas
           neptunium ATCC 15444]
          Length = 353

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 102/337 (30%), Gaps = 30/337 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLK 72
            R   G+     R+  GR +   +         +   +     + E ++        T  
Sbjct: 5   YRMPKGQWRAQVRRK-GRYVSQCFVRRKD-AEEWALKMERRVDRGESVSKNIPDDLSTFA 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---T 129
            LI  +         A+  R S     D++  K G      +  + I      R+     
Sbjct: 63  QLIDLHIADMLEVGKAL--RRSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAG 120

Query: 130 PSSAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           P +    ++ ++ +            +  Q  +A      +    +  E  R  T+E++ 
Sbjct: 121 PPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRLGLVGKAQERDRRPTQEELD 180

Query: 181 QFKSFWSEGSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           Q  +++   S+ +        F + + +R S+ C      +     ++  +        +
Sbjct: 181 QLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV-NKSAH 287
             D  + L+ +T        +   +           N       F+    + G+ +   H
Sbjct: 241 GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFH 300

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R    +   +AG    ++    G K     + YT 
Sbjct: 301 DLRHEGTSRLFEAGLQIEQVALVTGHKDWKMLKRYTH 337


>gi|285017063|ref|YP_003374774.1| phage integrase [Xanthomonas albilineans GPE PC73]
 gi|283472281|emb|CBA14787.1| putative phage integrase protein [Xanthomonas albilineans]
          Length = 347

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 83/323 (25%), Gaps = 23/323 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  K     R          +        A   A       R     P+ +  TL  LI
Sbjct: 19  KRGKKWRALVRLKGHPTASKTFNGRK---AAEDWARAAEDALRGGTALPQ-ESITLSALI 74

Query: 76  SEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             Y K    +  ++     +      +     GD +   +T + I + +  RK  P++  
Sbjct: 75  DRYVKEMSKFRPVS----ATKRGNLKRWEESLGDREVASLTGQDILTHIGQRKAGPATMT 130

Query: 135 QFLTSM-------RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             L  +       R L+   +     +  P L       K                + + 
Sbjct: 131 MELGFLGEVLAAGRSLWGMTIPDVVASSRPVLRRAGAIAKPVERDRRPTGKELDDLAAFF 190

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    R    F + S +R  +      +  ++        +       +  +    
Sbjct: 191 RFNLGAIPMRDLIPFAIDSAMRMGEIVALRWEDYRSGDKPTIQIRDRKDPMDKRGNNQWV 250

Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            L      I +                    F+    +  + +   H +R   A+   + 
Sbjct: 251 PLLGQTVEIIERQQRAGPLIFPYKPDSIGAAFRRACMRLQIEDLHFHDLRHEGASRLFER 310

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G +  E+    G +     + YT
Sbjct: 311 GYSIPEVAIVTGHRDWKSLKRYT 333


>gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
 gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Jonquetella anthropi E3_33 E1]
          Length = 391

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 99/356 (27%), Gaps = 38/356 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---------LTGSTPKREYINSP 64
              +H +  Y   +G  R++R      +T++    +          +      +E   + 
Sbjct: 33  RIGKHARTFYAVYRGKTRQLRKFKIGSATYLTLAQARDICKSVLGRIALGQDPQEERLAE 92

Query: 65  RKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +    +L+    E Y            +    E+ F +I+++        I+ + I    
Sbjct: 93  KTNTISLRKFFEEIYF--PKIRRERPKTAQRTETNFLRILKEDLSKPLASISAERIIKIR 150

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQ---------EYVAINPCLSVERPKRKTEGI 171
           E         +S  ++   +R    +A  Q         E +       +       E  
Sbjct: 151 EQLLRRGLGLTSVKRYENEIRASLNYAASQGLIEPIKVCEQIKCETTQRIRYLTPDEEER 210

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNNIFSI- 224
                ++  +      +  + R A          L +G+R     R   + +     +I 
Sbjct: 211 LQKALKERDEELRKTHKNIRGRYADYLEPLITLSLKTGIRRGAMLRLEWRDIDFAAKTIL 270

Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKAT 278
              +  KTG    + L     + L      +                       +K    
Sbjct: 271 VRGEICKTGKSRRIPLSPIAFETLKAWREQQPQENKYVFPSAYTNQPKKHCKCAWKNLLI 330

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +A + N   H +R   A+    AG   + +    G  T++    Y   A       
Sbjct: 331 RANITNFHWHDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKLSAA 386


>gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 34/291 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
            TL+   + Y       + +  +   +            + G     +++   + +    
Sbjct: 19  QTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERGLMQAAQVSLAALEAYQRH 78

Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174
                              + LTS+R+LF+W + + ++  NP   +  PK +        
Sbjct: 79  LHGYRKADGKPLAQGGQLNR-LTSIRMLFRWLLHRHHILYNPAEQLTLPKAEKRLPAQIL 137

Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               T+  M    +    G + R   E L  +GLR S+     +  +      +  ++  
Sbjct: 138 SEEETEAVMDAQDTDTLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGK 197

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----------- 279
                 +P G   L+ +             +        +IW K                
Sbjct: 198 GNKDRVVPVGLRALVWVQRYLDAVRPRLTTRHDSGYLFVTIWGKRLGRATLTILAGRAIR 257

Query: 280 --AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 258 NDAHLKKAGACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
 gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 111/331 (33%), Gaps = 13/331 (3%)

Query: 18  HGKII--YYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            GK    Y  R   G  +          +      A+       E       K  TLK +
Sbjct: 14  SGKRRRPYIVRITAGFDMEGRQIMKTLGYYETQTKAIKALADYNENPYDISLKDITLKEV 73

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           +  + ++     +  +S+ S++ +++ +     +   + I T  +++ + S  H +  + 
Sbjct: 74  MDRFMRNKKGL-VEKSSQKSYKVWYNYLKP-LCNKRMKDIRTLELQNFISSLNHLSTGTL 131

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               + +R+LFK A+  + +  +    ++ P+ K +  R    E+            +  
Sbjct: 132 KNIKSFIRMLFKDAMEMDIIVKDYSEFIKLPRHKPKIERKVFTEEEIALLWENINELEYA 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                L+Y+G+R ++  +    ++      I            +     K+L +     E
Sbjct: 192 DVILILIYTGMRINELLKLQKINVDLEQNIITGGSKTEAGKNRIIPIHPKILPLVIKRME 251

Query: 254 TFFINNDKQKMNATQFSIW------FKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                    +  +  +         F     + G+  + H  R   AT+ +D       +
Sbjct: 252 NKTEYLIPNRRKSNYYEYNNFRIKEFMNIMKQLGMEHTIHDTRHTFATMISDVSDNETAI 311

Query: 308 MATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
               G   ++  + YT    +++R  ++   
Sbjct: 312 TGIIGHTNINMTKRYTHTNIEKMRKELEKIN 342


>gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium]
          Length = 315

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 52/300 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+           +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLAPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|254384553|ref|ZP_04999893.1| integrase [Streptomyces sp. Mg1]
 gi|194343438|gb|EDX24404.1| integrase [Streptomyces sp. Mg1]
          Length = 384

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 99/363 (27%), Gaps = 37/363 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G+    +    G R   P    +         LT +  +R +   P       +    +
Sbjct: 21  SGRWQARYWAPDGSRRTAPETFATKTDAQDWLTLTKADIQRNHWTDPDVGKVNFEEYALK 80

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           +        LA  +   +       ++   GD D  +IT + +R+    R      ++  
Sbjct: 81  WVDE---RGLAATTDELYRRLLRLHVLPAFGDLDLDEITPQAVRTWRAERLTATGATTVA 137

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    ++ + + A   E +  NPC        + +     T   +         G + RL
Sbjct: 138 KCYRLLKAIMETATDDELIRRNPCRIRGAGSEQAKERPTATVAQVDALAEAM--GPRWRL 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTIITVELPDGF 241
              F  Y  +R  +        +                    + +              
Sbjct: 196 MVYFCAYGPMRPEEQAALRRTSVTLDPLAVRITEAAPELNTGRRVEGDTKSAAGVRTIHL 255

Query: 242 MKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK--SAHGV 289
              L M       +F   +                T F   +     K G+ K    + +
Sbjct: 256 PAFLYMEVKRHLDWFAEKEPDGLLFVGEKGAPFRRTSFGRKWAKARAKVGLPKDFRFYDL 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL----GIKNSRRISSVVDS 345
           R    T+S  +GAT  + M   G  +   A  Y    D  +     GI    R +    S
Sbjct: 316 RHTGHTLSTQSGATLKDTMVRAGQSSEKAAMIYQHSDDERQQEVAGGIDARVRAARQKAS 375

Query: 346 DDP 348
             P
Sbjct: 376 PKP 378


>gi|296875995|ref|ZP_06900053.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432986|gb|EFH18775.1| phage integrase family prophage Sa05 [Streptococcus parasanguinis
           ATCC 15912]
          Length = 388

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 116/387 (29%), Gaps = 66/387 (17%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63
           +T+ + + G  +Y         +  G+ ++       T       A        +  ++ 
Sbjct: 3   ITEHKKKDGTTVYRANIYLGIDRVTGKDVKTSIT-ARTRKEVKQKAKEAEIDFIQNGSTR 61

Query: 64  -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
                  T K L   + +S    ++  N++ +        I+   G +   K+TT  I++
Sbjct: 62  FKEATIKTYKELAELWWESYK-HTVKPNTQGNMSKILNKHILPLFGAYKLDKLTTPLIQN 120

Query: 122 GVESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +        +            +  T  + + ++ V  + +  NP   V  P+   +  
Sbjct: 121 IINKLA--GKTNNGEQGAYLHYEKIHTVNKRILQYGVVMKAIPFNPAREVILPRNTQKEK 178

Query: 172 RPWTKEDMQQFKSFWSE------GSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL--- 217
           R   K         + +        + R  +E  LY     +G R +++       +   
Sbjct: 179 RQKIKHFDNIELKTFLDYLDNLDSDRYRYFYEKTLYNFLLATGCRINEALALEWSDIDLD 238

Query: 218 ----------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---------- 257
                              +   +   +++    + +L      +               
Sbjct: 239 NAIVHVTKTLNRMQEVNSPKSKSSYRDIDIDPKTVTILKQYKRRQTQEAWKIGQTEKVVF 298

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            +   +  N +      K    +A V     HG R   A++  +AG    EL    G  T
Sbjct: 299 SDFIHEYPNNSTLFTRLKTHFKRAKVPNIGFHGFRHTHASLLLNAGIPYKELQHRLGHST 358

Query: 316 VDQAE-TYTKGADRIRLGIKNSRRISS 341
           +     TY+       L  +++++  S
Sbjct: 359 LSMTMDTYSH------LSKESAKKAVS 379


>gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 278

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 79/275 (28%), Gaps = 12/275 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KH 128
           ++  +         +  +   +        +  G  + D  + +   ++  ++     K 
Sbjct: 3   ILDSFINHEKEHGKSPETIRGYHYKLLHFEKWLGAVETDLYEFSRSDVQQYLDDLTSQKK 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+      ++R   ++A + + +     +      R+        +      +   S 
Sbjct: 63  SASTVNGHYAAIRSFSQFAKKTDCIKDIRIVKAPNLYREAPVALERKEVLRILREVDRSG 122

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKL 244
             + +      +Y+G+R ++     +  +  +       ++  K      + L       
Sbjct: 123 NKRDKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQGKGNKERIIPLHKEARYA 182

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           ++     +E+                   +    K GVN   H  R    T   DAG   
Sbjct: 183 ISDYLKTRESTAAALFLSNRQTRISKRTVQHICNKYGVN--PHQFRHTFVTDLVDAGIDD 240

Query: 305 HELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
             +    G ++      Y     +  +  I+   R
Sbjct: 241 KTIQTLTGHESPAMITRYRSVRPEDKQNAIEALYR 275


>gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
 gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149]
          Length = 408

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/413 (9%), Positives = 92/413 (22%), Gaps = 77/413 (18%)

Query: 1   MTPSLRLPPFVTKER----TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M  S +              + G+  Y +      R      +  T +            
Sbjct: 1   MAKSRKDSRGYVLRTGESQRKDGRYSYSYTDLDKNR---RTVYAKTLVELRAKERKIIRD 57

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKIT 115
           K + +N       TL  L   + +      L  ++++++   ++       G     KI 
Sbjct: 58  KEDGLNPQLADRMTLNELYDRFIE--QKYDLKPSTKVNYLYMYNHFVRPTFGKRLIGKIK 115

Query: 116 TKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKR 166
              ++          +   ++     T +   F+ AVR   +  N          +    
Sbjct: 116 YSDVKKFYYRIILDEEMKANTLDSIHTQLHPAFQMAVRDGLLRQNPTDGLMAEIKKSHIW 175

Query: 167 KTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           +       T         +     E          LL +G+R  +        L      
Sbjct: 176 EDNPRHALTIPQQKAFMDYLKAHREYQGWVPIITVLLGTGMRIGECIGLRWDDLDFEKRI 235

Query: 224 IKTQKTGTIITVELPDGFMKL----------------------LAMTPIGKETFFINNDK 261
           +    T      E       +                      L    I K   F + + 
Sbjct: 236 VSVNHTFIYRPDENRKSVKHISTPKTISGRRTIPMIDEVFNAFLDEYEIQKCIGFSSEEI 295

Query: 262 QKMN-------------ATQFSIWFKAKATKAG-----------------VNKSAHGVRK 291
              +                 +   +                         + SAH +R 
Sbjct: 296 DGYSNFVFVTATGTVYLPNAVNRAIERARVAYNKDEIEIAEKEDREPLIIPHFSAHHLRH 355

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
              T   +  +    + +  G   +      Y +     +   +    +   +
Sbjct: 356 TFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKK--QEIVANLQGKI 406


>gi|16128520|ref|NP_415069.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107403|ref|AP_001183.1| predicted integrase [Escherichia coli str. K-12 substr. W3110]
 gi|170080119|ref|YP_001729439.1| DLP12 prophage; integrase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238899817|ref|YP_002925613.1| DLP12 prophage; putative integrase [Escherichia coli BW2952]
 gi|124695|sp|P24218|INTD_ECOLI RecName: Full=Prophage DLP12 integrase; AltName: Full=Prophage QSR'
           integrase
 gi|41811|emb|CAA35974.1| int [Escherichia coli]
 gi|146497|gb|AAA65483.1| integrase [Escherichia coli]
 gi|455171|gb|AAA24030.1| DLP12 integrase [Escherichia coli]
 gi|1778451|gb|AAB40734.1| DLP12 integrase [Escherichia coli]
 gi|1786748|gb|AAC73638.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85674673|dbj|BAE76313.1| predicted integrase [Escherichia coli str. K12 substr. W3110]
 gi|169887954|gb|ACB01661.1| DLP12 prophage; predicted integrase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860795|gb|ACR62793.1| DLP12 prophage; predicted integrase [Escherichia coli BW2952]
          Length = 387

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|319775691|ref|YP_004138179.1| Prophage integrase [Haemophilus influenzae F3047]
 gi|319896769|ref|YP_004134963.1| prophage integrase [Haemophilus influenzae F3031]
 gi|317432272|emb|CBY80624.1| Prophage integrase [Haemophilus influenzae F3031]
 gi|317450282|emb|CBY86498.1| Prophage integrase [Haemophilus influenzae F3047]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 103/324 (31%), Gaps = 22/324 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + ++G     F    G R+R      +          L     + E +N  +K   T++
Sbjct: 4   RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVEQLN--KKPEKTVE 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
             +    K A          ++   +      + G+     +T++ I++          +
Sbjct: 62  QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  ++ +S+      A +  ++ + P ++      + +    W  E   +     
Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAK---NSEPKKRIRWITEKEAERLLDS 174

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
              +  +   +F L +G R ++        +                    ++ L D  +
Sbjct: 175 LNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300
            L+      + + ++ +          S   FK    +A +     H +R   A+     
Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW+T++  + Y  
Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318


>gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 370

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 114/352 (32%), Gaps = 39/352 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +T  + + G+ +Y F    G+          +   FI    + +  +  K++ + S    
Sbjct: 3   ITSYKDKDGQTLYKFNIYLGKDPLTGKEIRTNRQGFISKKQAQIEYAKLKKQGVKSI--C 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             TL  L+ ++                +  + + I+   G+    KITT  I+  +  + 
Sbjct: 61  NITLNELLKDWLPLYEPTVKYTTYTRVYGVFKNHILPYLGNKKLDKITTPVIQKLINKKS 120

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +        +  LFK+A+ Q Y   NPCL++  P  + E      +   ++    + 
Sbjct: 121 QEIADFKLINIYLNRLFKFAINQGYTDYNPCLNIIYPTIRKEQKDMSLEYWDKEELKEFL 180

Query: 188 EGSQPRLAFEFLL------YSGLRCSDSCRAGVQHLQNNIFSIK---------------- 225
             ++  L   + L      Y+GLR  +        +     ++                 
Sbjct: 181 YHAKKDLDQMWYLFFKIATYAGLRKGEILALTWNDIDFKNKTLTVNKSLSVTRQSKKAIT 240

Query: 226 -TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKA 275
             +   +I T+ +    +K L                +  F     + +N       F+ 
Sbjct: 241 SPKTKSSIRTISIDKTTIKELYNWKIEQSKLKLQNINQYIFTTKQSELINLNSPRKRFER 300

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
              K  + K   H +R   A++  +AG T  ++    G  T       Y   
Sbjct: 301 VIKKHDLRKIRLHSLRHTHASLCFEAGMTIKDVQHRLGHSTSKTTMNIYIHV 352


>gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
 gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 82/241 (34%), Gaps = 13/241 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRK 167
              +         + +    ++   +L ++R     AV ++Y+ +NP   ++    PKR 
Sbjct: 141 IDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRN 200

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
                  T +++ +        +  R AF F  + GLR  D      + ++ +       
Sbjct: 201 RTERDYLTIKELTRLVHTPFYNTLLRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALL 260

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +KT   I++ L    +K L       ET  +      +  +           +AG+
Sbjct: 261 SIIQKKTKEAISLPLCSEAIKHLPDRGNAPETEKVFAGLVSLGRSNV--ILHKWVEQAGI 318

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339
             + + H  R   AT+    G   + +    G   +   + Y K  D   +  I     I
Sbjct: 319 SKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAIDLIPNI 378

Query: 340 S 340
           S
Sbjct: 379 S 379


>gi|304413964|ref|ZP_07395381.1| phage integrase [Candidatus Regiella insecticola LSR1]
 gi|304283684|gb|EFL92079.1| phage integrase [Candidatus Regiella insecticola LSR1]
          Length = 380

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 119/380 (31%), Gaps = 59/380 (15%)

Query: 17  RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R GK     +    G+RI+      +                + + +++      TL+  
Sbjct: 5   RRGKIWYASYSLPEGKRIKESLGTEDKRQAQELHDKRKAELWRIDKLDN--LPEVTLEEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
              + +          S    +S     +        +++T   I + +    +      
Sbjct: 63  CLRWLEEKADKK----SLDDDKSRMGFWLLHFEGVKLKELTEARIYAAISKMTNRRYAEN 118

Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                    S+  + L  M+ L +    +++  +     ++ P+
Sbjct: 119 WRLQSEAMVRKGQKAPEYQEKAVTLSTKAKHLALMKSLLR-TAERDWKWLEKAPVIKVPQ 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            K + IR     + Q+      E    +   +F L +GLR S+      + +        
Sbjct: 178 VKNKRIRWLKPAEAQRLIDECPE--PLKSVVKFALATGLRRSNIINLEWKQIDMPRRVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269
            + +  K+G  I V L +   K+L        T+     + K                  
Sbjct: 236 INPEDSKSGQAIGVALNETSCKILRDQIGKHHTWVFVYTEAKTRTDGTLTPSVRKMRVDA 295

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+     H +R   A+    AG     L    GW+++D    Y   + R
Sbjct: 296 NSAWKQALKRAGIEAFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIDMVRRYAHLSPR 355

Query: 329 IRLGIKNSRRISSVVDSDDP 348
                ++++ I ++ D+D P
Sbjct: 356 H--LTEHAKHIDAIFDNDVP 373


>gi|254563094|ref|YP_003070189.1| integrase [Methylobacterium extorquens DM4]
 gi|254270372|emb|CAX26368.1| putative integrase [Methylobacterium extorquens DM4]
          Length = 337

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 92/335 (27%), Gaps = 17/335 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R+     I   +  ++  +                +     +  T+  L
Sbjct: 6   RKRGSSWQAQVRRQGSSPISKSFTTKADALLWARETERSIDRAELPVTIKDLQRITVADL 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH--TPS 131
           ++ Y                       I           K+T   +    + R      +
Sbjct: 66  LARYEAEVTTKKRGA---DRERYKLRVIRSHPLTSLSLAKLTAVAVSRYRDDRLKVVQGA 122

Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +  + L  ++  F+ A ++    +  NP   +  P+      +    E  Q+  +     
Sbjct: 123 TVRRELAILQHCFEVARKEWGTPLPTNPVHGITLPEPSRAREQRLEAEAGQKLHAAIGSV 182

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L     L   +G+R  +      +H+     +     T       +      +   
Sbjct: 183 HAWYLRPLMELAIETGMRRGELLSLQWRHVSLGKRTAHLPITKNGHARTVALTPKAI--- 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             I K     +     ++     + ++    +AG+     H +R  + +   +AG +  E
Sbjct: 240 -EILKALPQTDARVLPVSGNAVRLAWERLRKRAGLPGLRFHDLRHEAVSRFFEAGLSIPE 298

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +    G +       YT    R     +   +++ 
Sbjct: 299 VALMSGHRDTRMLMRYTHL--RPEALAEQLAKVAQ 331


>gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
 gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3]
          Length = 330

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129
           L+  +  +      +  S   +++    +I        R+I T  +R  + +    R  +
Sbjct: 55  LLEIFISAKRVEGCSEKSLKYYDATIRHMIVDIA-KPVREIDTGDLRIYLANYQKLRNSS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +           F W   ++Y+  +P   + + K +      ++ E +++ +    E 
Sbjct: 114 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRDACDE- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +     + L  +G+R  +  +        +    +   K G    V         L   
Sbjct: 173 LRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDARTKIHLRNY 232

Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
              +            +              +     A +     H  R+  AT + D G
Sbjct: 233 LDSRSDDNPALFVSLTSPHERLLIGGVETRIREIGKNAALQKVHPHKFRRTLATRAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G   +D    Y 
Sbjct: 293 MPIEQVQRLLGHVKIDTTMHYA 314


>gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 304

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 14/276 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125
            + +I+ Y+ S  +  LA +++ ++  + D+I +K GD    +          IR     
Sbjct: 20  FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 79

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P +A   +  +  +  +AV     ++ NPC  +++  +       WT +D+ + K+
Sbjct: 80  FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 139

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242
                 +   A +   ++GLR  D  R    H+ +N   +     +      + L     
Sbjct: 140 KC--SPEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 197

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299
            LL   P        N  K       F   F     +A +   +   H  R  +AT    
Sbjct: 198 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           AG +   +    GW+         +   R    I+ 
Sbjct: 258 AGLSERVIAEIMGWEEETVRNIIRRYVSR-TAAIEA 292


>gi|258653657|ref|YP_003202813.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556882|gb|ACV79824.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 368

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 97/357 (27%), Gaps = 35/357 (9%)

Query: 20  KIIYYFRKGHGRRIRLPYPH-ESTFIPAY----MSALTGSTPKREYINSPRKKPTTLKWL 74
           +    +     +    P          A+       +   T       +   +  T    
Sbjct: 17  RYRARYTGPDTQLHNAPSTFETREDAEAWLTDERRLIAAGTWAPPAHRTKTIEHRTFGDY 76

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSS 132
            +++        +   +R  +    D+ I+        + IT   +R+       + P+ 
Sbjct: 77  ATDWLT---ARPIKPRTRSHYAMLLDKLILPGFESSPLKTITPDQVRAWHTRLGDSTPTL 133

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                + +R +   AV    +  NP         K                      ++ 
Sbjct: 134 RAHAYSLLRAILTDAVHDGIIPANPAHIRGAGNAKRVHKIKPASLAELGVLVGAMPDAKY 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------- 232
           +L      + GLR  +        +      I  ++                        
Sbjct: 194 QLMTLLAAWCGLRFGELTELRRSDIDAKNGVIHVRRGVVRTDGEVIVGTPKSAAGHRDVN 253

Query: 233 ITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGV 289
           I   L       L     G++   F   +    +  +     F     KAG  +   H +
Sbjct: 254 IPPHLLPAVRDYLKANVNGRDGLLFPAADGVSHLAPSSLYRVFYPARKKAGRPDLRWHDL 313

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           R   A ++A  GA+  ELM   G  T   A  Y   A       + +RR+S +V+ +
Sbjct: 314 RHTGAVLAAATGASLAELMGRLGHSTPGAALRYQHAAQGR--DAEIARRLSQLVEVN 368


>gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. syringae 642]
 gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   R +              +       E    G + R  
Sbjct: 99  LFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++    V  +Q        +  G                 I   L + 
Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L                   + A        A A KAG+       HG+R  +AT +
Sbjct: 219 EHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2]
 gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2]
          Length = 305

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 23/289 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHT 129
             L   +R           ++  +       +         +    H+ S    + R   
Sbjct: 12  GKLTQAFRIWMKQAGYTDTTQKEYMREAYAYLESLEGAAAEQAGKMHVISFLISKQRGAG 71

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +  + L+++R  +   +  E    NP +   +    K +      ++++    S    
Sbjct: 72  DRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYLEEDELASSLSCIEG 131

Query: 189 GSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
             + R    FLL  Y GLR  +  R           +I+    G           +  + 
Sbjct: 132 RYRARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIEVFGKGRKWNEIPVPEELAAVL 191

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---------------VNKSAHGV 289
             +       +    D   ++     +  +     AG                  S H +
Sbjct: 192 SEVAQDRITPYKEQEDAFFVSQKGRRLSIRQIQKIAGQTFEAFKSINPHAANKKLSCHKL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
           R   ATI    G     +    G  +++    YT    D+ +  +   R
Sbjct: 252 RHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAMATIR 300


>gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 410

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 93/317 (29%), Gaps = 24/317 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107
            +   +E +    K  TTL   + E+     +     ++ +S  ++      +    G  
Sbjct: 92  EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIRKNLAEFIGEK 151

Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D  + ++T   I        + +  +  +   +++  + + + A  +         
Sbjct: 152 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 211

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                  K    +  +  D  + +       +PRL+    L+     + +       +  
Sbjct: 212 HYRVGTPKVMTPKALSMSDFIKIRDVELPEDKPRLSVSRDLFLFACYAGTAFIDTVSITK 271

Query: 220 NIFSIKTQKTGT---IITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWF 273
               +                    +KLL          E    +     ++  +  I  
Sbjct: 272 ANVKVLEDGDKWLVYNRKKTGTLARVKLLPEALELMAKYEDEARDTLFPLLSTNRVRIDL 331

Query: 274 KAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 A  +K+   H  R   A++   +AG     +    G K V   + Y +   + +
Sbjct: 332 ITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-QKK 390

Query: 331 LGIKNSRRISSVVDSDD 347
           L  ++  +  +  + D 
Sbjct: 391 L-FEDMDKFIAATEKDF 406


>gi|160938619|ref|ZP_02085971.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438318|gb|EDP16077.1| hypothetical protein CLOBOL_03514 [Clostridium bolteae ATCC
           BAA-613]
          Length = 298

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 19/277 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
               ++ +S      ++ +   +  Y  Q     G+      T + +     + +   TP
Sbjct: 15  EAFGQWLESCE---RSMETVKKYRHYLKQFKEFIGEEPV---TKEMVLLWKANLREHITP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    + ++   FK+       +    +S           +  TK++ ++      +  
Sbjct: 69  VTINCVIAALNGFFKYCGWDGCESKFLKISKSSFY---PERKELTKDEYKRLVKTAFDNG 125

Query: 191 QPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLA 246
             RLA   E +  SG+R S+     V  +      I+ +     +  T +L         
Sbjct: 126 NERLALVLETICASGIRVSELSFITVAAIHKGQAEIECKGRIRTVLLTRQLCSLLHSYAQ 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
              I     F+  + + ++ +      KA   +A V       H +R   A    +    
Sbjct: 186 KNNISSGMIFVTKNGKPLDRSNIWREMKALGIEANVKAEKIFPHNLRHLFARTYYEIEKN 245

Query: 304 AHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
             +L    G + ++    YTK +  + R+ ++  + +
Sbjct: 246 LSKLADILGHRDINTTRIYTKESGSQHRIQLEKMKLL 282


>gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
 gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus
           12G01]
          Length = 396

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 100/346 (28%), Gaps = 38/346 (10%)

Query: 15  RTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP----RKK 67
             ++G+  +  R    G    + L    E +   A+  A        E ++      +  
Sbjct: 41  VGKNGRKKWLVRYTLNGRKGSLSLGTFPEVSLADAWKQAQRTKLMVAEGVDPKNSTVKPD 100

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES 125
             T+    +      H+  ++ + + S+     +     +  D  Y ++   HI+S V  
Sbjct: 101 IPTVSEYFN-----NHFIKISKSRKKSWRHDIARFNHCVEIWDISYDQLRVSHIQSMVAG 155

Query: 126 R---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                     K + S+  + L  ++++ +    +  +  N    V+         R  + 
Sbjct: 156 LIDKVHLRGKKLSRSTINRVLCLLKLMGRMIEEEYSI-PNVAARVKLFPETGARERWLSP 214

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++++      +     +   F++   +              N        +     +  
Sbjct: 215 QEIKRIFEELRKPDYCPIRSRFIILLFMLGCRERSLRAARWPNIDLENGVMRIPREDSKN 274

Query: 237 LPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
                ++L          L         +     K+K + +Q    F     +  +    
Sbjct: 275 GFQHQIQLTPQAIQEFRFLLRLKKKGNPYVFPGQKEKSHISQPRHLFNKIKKELMLKEPE 334

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               H  R   A+    AG     L    G K++     Y +  + 
Sbjct: 335 QIVFHTARHSYASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNE 380


>gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12]
          Length = 338

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%)

Query: 72  KWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRS 121
            + I  +      +  +L+ N+  S+      ++                  IT   +  
Sbjct: 11  GYWIRRFLCEYLTNIRNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVD 70

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            ++S    R  +  +    L ++    K+        I    ++     K       T  
Sbjct: 71  FLDSLERNRSCSIKTRNLRLAAVCSFAKYISVNCPEHIEWSRNIRIIPVKKTERTLITYL 130

Query: 178 DMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IK 225
           + ++            S+G +      FL  +G R  ++    ++ L             
Sbjct: 131 EKEEMNALLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSI 190

Query: 226 TQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281
           T K        L       L          E  F+N   Q +            A K   
Sbjct: 191 TGKGNKTRRCPLWQHTRDALSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKE 250

Query: 282 ----VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               + K   S H +R  +AT    +G   + + A  G  +++    Y + 
Sbjct: 251 LIPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEV 301


>gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
 gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O]
 gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6]
          Length = 320

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 53/300 (17%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
                   A  +  ++ S+  Q I          +  KH+   +         A +    
Sbjct: 11  DHMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQAL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  +           +N  +  ++     +     TK +++ F        + +L    
Sbjct: 71  ALNSVLFLYREYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH--IDPRYKLHIML 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  SGLR  +  R  +Q +  +  +++  +                              
Sbjct: 129 LYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALRYY 188

Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                    E+   +  L     + ++       +  +N     
Sbjct: 189 QKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQALQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  AG+ KS   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 249 RAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308


>gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606]
 gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606]
          Length = 391

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 26/309 (8%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFE--- 96
           F     S        +      R+   T+  L ++Y    +      ++   + ++    
Sbjct: 60  FQRLEFSEELSLERIKSEYLGKREAMETVLSLFTKYNNDMYAQIGCGVS---KANYRKFD 116

Query: 97  ---SYFDQIIR-KSGDFDYRKI--TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKW 146
               +F   +  K    D   I  T   I       +     + ++AI+ L + + +  +
Sbjct: 117 ICKRHFTNFLEIKYARTDLNAIELTPIVIHDFDVYLRTIVGQSFNTAIKTLKTFKTVIIF 176

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
             +      +P L++   K K       T E++           +    R  F F  ++G
Sbjct: 177 GRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEIDTIMHKEFATQRLVNVRDIFLFSCFTG 235

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       ++                        + +  M          N     
Sbjct: 236 LAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLLDIPKMIIKKYAGCAKNGRLIP 295

Query: 264 M-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + +  + + + K  A   G+NK  + H  R   AT+    G     +    G  ++   +
Sbjct: 296 ILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQ 355

Query: 321 TYTKGADRI 329
            Y +  ++ 
Sbjct: 356 LYARITNKK 364


>gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3]
 gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3]
          Length = 312

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 84/320 (26%), Gaps = 32/320 (10%)

Query: 46  AYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQ 101
              +       +        + +          Y  S         ++           +
Sbjct: 2   RIRAEREQEFKESMLGYRLKKDRAVNFLDYFQAYINSY--------TKKDIRMVQIALSR 53

Query: 102 IIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQE 151
                 +             IT + +   V   +       A       + + ++A+  +
Sbjct: 54  FKDFLKEQYPMNEFSIKPELITKEMMEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHD 113

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSD 208
            +  +PC SV          +     +  Q         E    R AF F LY GLR  D
Sbjct: 114 VMLKDPCKSVTCKVDSQMLRKDVLSPEEIQKLIACHYDNENPTIRRAFIFCLYCGLRFCD 173

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMN 265
                 +++      +K +++ T          + L   L                    
Sbjct: 174 VKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLPT 233

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG++K  S H  R   A    + GA    + +  G   +   E YT
Sbjct: 234 YESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 293

Query: 324 KGADRIRLGIKNSRRISSVV 343
           +  D  +L  +    +  + 
Sbjct: 294 RAVD--KLKEEAINSLPELK 311


>gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC
           43184]
 gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 330

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
             L+  +  +         +   + S   Q+ +K         TT+ IR+         K
Sbjct: 53  DRLLDIFLSAKQVEGCTTPTIKYYGSTIRQLFKKMPKK-VTDYTTEDIRAYLAVFQRKNK 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K  T+     + E+++Q +   +
Sbjct: 112 SSRVTIDNIRRIFSSFFAWLEEEDYIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDSCT 171

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +  +   + +  N    I   K      V         L 
Sbjct: 172 E-IRDLAIIDILASTGMRVGELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQ 230

Query: 247 MTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                ++              +++  +      +     A +     H  R+  AT++ D
Sbjct: 231 QYLASRKDRNKALFVSLAKPHKRLGISGVETRLRKLGRSAKIVRVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPVEQVQRLLGHVKIDTTMHYA 314


>gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195]
 gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223]
 gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195]
 gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223]
 gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 83/267 (31%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +     IT + + +        R 
Sbjct: 2   SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++           PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDFTVQLSL-----PKRPHKLPQLLSCQDIAALLCHCQ 115

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              + R         GLR S+     V  +      +K  +        V +    + LL
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 271

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 85/253 (33%), Gaps = 6/253 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I++Y++    G  A  +     S+  + +    D     +TT  I   + + +  P++  
Sbjct: 10  IADYQEHLLAGGRARGTIHVRISHISRCLTFI-DKPLWAVTTGDIERWLAAGEWGPAARK 68

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              TS+RV F WAVR+  +  NP +++    +     R     D     +      + RL
Sbjct: 69  SARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPR--PCPDALISDAMKVAAPRVRL 126

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           A E +   GLR  +  R     ++        +  G      L      L       +  
Sbjct: 127 AIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRIAAAQGW 186

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F       ++A             A    + H +R   AT++         +    G  
Sbjct: 187 VFPGGANGHVSAGWLGKLISRALPGA---WTPHKIRHRYATVAYGDTYDLRAVQELLGHA 243

Query: 315 TVDQAETYTKGAD 327
           +V   + YT  +D
Sbjct: 244 SVATTQIYTAVSD 256


>gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 392

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 19/276 (6%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           L  +++ +  S    +     D  + ++T + I S     +            M+ L K+
Sbjct: 120 LKKSTKKNHLSTLALLQEFKKDVTFSELTFEFISSFEHFLQLKGYHTNTVAKHMKHLKKY 179

Query: 147 AV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFE 197
                 ++            + +           E++ + +     G   +      AF 
Sbjct: 180 INVAINKEYMSMQQYAFRKYKIRMVENKHTHLIPEELDKLEKLDLTGKNTKYQKTLDAFL 239

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  Y+G+R SD       ++      I           E+      L     I     + 
Sbjct: 240 FCCYAGMRYSDFISLMPNNIVEINKEIWLVYKSVKTNTEVRLPLYLLFGGKGIDILRKYW 299

Query: 258 NNDKQKMNATQFSIWFKAK---ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
           +N +   +    S   K     A  AG+    S H  R  +AT+    G     +    G
Sbjct: 300 DNIQAFFHIKDNSNANKDLIILARLAGISKKISFHTARHTNATLLIYNGVNITTVQKLLG 359

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            K+V   + YT   D     +     +   + ++ P
Sbjct: 360 HKSVKTTQIYTNVMD-----MTIVCDLEKNLGNNFP 390


>gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 324

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 31/304 (10%)

Query: 68  PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119
           PTTL  L +   +S       S A  +  +       +     D + + I  + I     
Sbjct: 6   PTTLLELSNAELQSVKESVGKSKAEGTYTNLCYANRMLCEFIKDLESKDIEIRSITEELF 65

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPW 174
              R  ++ +    S+   +L  +  L   AV +  +  NP  + +  K + +    +  
Sbjct: 66  EEYRFFLKKKGLKGSTINNYLCWLSRLMFRAVSKRIIRCNPLDNAKYEKDEKKIRFLQKS 125

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
               +   +    E    R  F F  ++GL  SD      +H+Q         +     T
Sbjct: 126 DVMKLMSMRMNDKETELARQMFIFSCFTGLAISDMENLKYKHIQTAADGQMYIRKERQKT 185

Query: 235 VELP--------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                +K +       +       +   + +  +          
Sbjct: 186 KMEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGRAC 245

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+ +    H  R    T+   AG     +    G  ++   + Y +  D      ++  R
Sbjct: 246 GIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCK--ISEDMDR 303

Query: 339 ISSV 342
           + + 
Sbjct: 304 LIAK 307


>gi|283785697|ref|YP_003365562.1| putative phage integrase [Citrobacter rodentium ICC168]
 gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168]
          Length = 326

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 89/286 (31%), Gaps = 22/286 (7%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQII 103
           +   +  +  K+E++ +      TL  L+  +        L   +  +        ++ I
Sbjct: 38  FERYVMANVEKKEWLGASTD-RRTLGELLEIWWL------LHGQTLENGAIERQQLEKTI 90

Query: 104 RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           R  G+    ++  + I      R     + S+  + +  +  +F    +     +     
Sbjct: 91  RALGNPAVNRLDKREIARHRGERLTDGISASTINRDVYRLSGMFTALSKLGEFRVENPCH 150

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             +P R+ +    +  +        + EG   R+A    L +G R ++      + + + 
Sbjct: 151 GLQPLREAQPPMTYLTKQEIARLLEFLEGDNRRVALLC-LSTGARWNEGSTLRAEQVNHG 209

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             +    K G   TV + +   + +     G             N  QF    +      
Sbjct: 210 RVTFLKTKNGKKRTVPISEALEREIKTCETGPLFDV--------NYAQFREQLRRVKPDL 261

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +S H +R   A+     G     L    G  ++ Q   Y   A
Sbjct: 262 PRGQSTHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLA 307


>gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 327

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 14/261 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTP 130
            + +  +      +  +   +    + ++   G    ++ITT  +R         R+ + 
Sbjct: 53  AAAFITAKRIEGCSEKTLTYYSKTIEAMLNGVGKSP-QQITTDDLRRYLTDYQTQRRSSK 111

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +   F W   ++++  +P   + + K        +T E ++  +   S   
Sbjct: 112 VTIDNIRRILSSFFSWLEDEDFIVKSPVRRIHKVKTAKIIRETYTDEALELMRDNCST-V 170

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +     + L  SG+R  +      + +  N               V         L    
Sbjct: 171 RDLAIIDLLASSGMRVGELVTLNREDINFNERECVVFGKGNKERLVYFDARTKIHLQNYL 230

Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +               +++         +    +  +NK   H  R+  AT + D G 
Sbjct: 231 DERSDSNPALFVTLKEPHERLMIGGVETMLRELGRRLKLNKVHPHKFRRTLATSAIDKGM 290

Query: 303 TAHELMATYGWKTVDQAETYT 323
              ++    G + +D    Y 
Sbjct: 291 PIEQVQQLLGHQKIDTTMHYA 311


>gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565]
 gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565]
          Length = 321

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 81/314 (25%), Gaps = 32/314 (10%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           R +     E+     ++       P  E    P      L  L+  +         ++  
Sbjct: 2   RKQFATKGEALAFERFVLDPDKGKPWLEGQGEPIDGRR-LSDLVELWF---GRHGQSLRD 57

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------------KHTPSSAIQ 135
             + +S    +    GD      T +   +  E+R                  TP++  +
Sbjct: 58  GEARKSKLLTVCHYLGDPLAVNFTARDFAAYREARLSGDITDRRAINQEKQGVTPNTVNR 117

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQP 192
               +R +F    R         L   R  +  E    +   D  +        S     
Sbjct: 118 EHAYLRAVFNELKRLGEWQSENPLDGLRAYKVAEAELAFLYPDELKRLLAACAESPNPDL 177

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L  +  L +G R S+        +  N  +    K+    +V +       L       
Sbjct: 178 LLVVKLCLATGARWSEVEELTQSQVSPNRITFTRTKSKKSRSVPISPELYAQLPRKRGRL 237

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
            +              F +  +    +    ++ H +R   A+     G     L    G
Sbjct: 238 FSDC---------YRAFEMVVERAGLELPAGQNTHVLRHTFASHFMMNGGNILVLQKILG 288

Query: 313 WKTVDQAETYTKGA 326
             T+     Y   A
Sbjct: 289 HSTIAMTMRYAHFA 302


>gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 337

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 50/308 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK------------ 117
              +I ++    ++ +L++ +  S+        +   +  D + +               
Sbjct: 11  FDEIIQDFLDYCNYKNLSLKTIKSYHQTLTLFFKYLEEEKDIKNVNKIGKQIVEEYIKFT 70

Query: 118 --------------HIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                          +++ ++ R     K + S+   +L +++V F +    + +  N  
Sbjct: 71  QERGKYSFVASIDGMVKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENTV 130

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
              +  K + +     T  +  +             +  +    +  +G+R +++    +
Sbjct: 131 KKCKYIKNERKSKEQLTDNEFNKLIKSMDLTKFHEYRDYVITNLIFDTGMRLNETLNLTI 190

Query: 215 QHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------ 264
             +     +I              V       KLL      K+T                
Sbjct: 191 NDVDFTRRTIMIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPTQRTNGV 250

Query: 265 -NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            + + F   F+    +A +NK  + HG+R   A     A +  H L    G  +V   E 
Sbjct: 251 LSVSNFERNFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTEK 310

Query: 322 -YTKGADR 328
            Y    D 
Sbjct: 311 AYLDLMDE 318


>gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
 gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF
 gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element
           [Sinorhizobium fredii NGR234]
          Length = 251

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 13/231 (5%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             I T  +      +K  P S    L+++R  F   + +++         ++P    +  
Sbjct: 5   EDIRTYQVY-LANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKP---QKLP 60

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
              + +++Q F        +          +GLR S++ +     + +    ++    K 
Sbjct: 61  IILSPDEVQHFLG-CVADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKG 119

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGVN 283
                V L    +++L                 +                     +    
Sbjct: 120 QKDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKP 179

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            + H +R        +AGA    +    G +++     Y + A       +
Sbjct: 180 VTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATE 230


>gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 330

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 86/313 (27%), Gaps = 40/313 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDY------------RKITT 116
           L  LI  +           + N+   +   F  ++R +                   +  
Sbjct: 6   LPALIQRFFTDRLCVQMEASRNTVAGYRDTFRLLLRYASARHVKPPVKLTIEDIDADLIA 65

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +     +R ++  S    L ++R  F++    +   +  C  +     K    R  T 
Sbjct: 66  DFLVHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAMPNKRYVKRTVTF 125

Query: 177 EDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            D  +              G +        + +GLR S+        +     +      
Sbjct: 126 LDSDEIAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLQCGDVVLESGAHIRCMG 185

Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVN 283
                    L    +KLLA      +      F +   ++++        +     A + 
Sbjct: 186 KGRKERATPLRRETVKLLAAWIGDDKNKSKPLFPSIRGERLSRDALEHLVRKHCLTASLT 245

Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                    + H +R  +A      G     +    G + V+  + Y     R++     
Sbjct: 246 CPSIGSKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRLKE---- 301

Query: 336 SRRISSVVDSDDP 348
            + ++ V   D P
Sbjct: 302 -KALARVAAPDTP 313


>gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
 gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827]
 gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131]
          Length = 337

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 91/316 (28%), Gaps = 38/316 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDY 111
                K ++   ++ ++         +L+  +   +       +  +             
Sbjct: 3   RKSMSKQSSFPEIVQQFFTEYLVAQRALSPQTIACYRDALKLFLEFATSQLHRQPVAMKL 62

Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERP 164
             IT   I   ++     R++T  S    LT++R   ++A R++      +   L+V   
Sbjct: 63  EDITPDLILKFLDNLELERQNTVRSRNLRLTALRTFLRFAGRRDITALHTVERALNVPMK 122

Query: 165 KRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           +     I   T+ ++              +  L F  +  +G R S+     V  +  + 
Sbjct: 123 RFDQPLIGHLTRPEIIAILGAPGDDWTSQRDHLLFTIIYNTGARVSEVINIRVVDVVLDG 182

Query: 222 FSIKTQKTGTIITVELPDG------FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWF 273
            +             +P            L                  Q M     +   
Sbjct: 183 SACVHLNGKGRRKRSIPLWKSTVGIIRAWLRTNQNMHGDAALLPARSGQPMTRANVAQRL 242

Query: 274 KAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +A            S H +R  +A     +G + + +    G ++V+    Y + 
Sbjct: 243 ALAVNRAAATQPSLKTKRVSPHVLRHTTAMHLLQSGVSFNLIALWLGHESVNTTHRYVEA 302

Query: 326 ADRIRLGIKNSRRISS 341
              +++  +   R+ +
Sbjct: 303 --NLQMKEEVLSRLDA 316


>gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 336

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 93/334 (27%), Gaps = 42/334 (12%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G  I   Y    +G+RIR        F     +        +      ++   TL
Sbjct: 4   RKNPAGGWICELYPNGANGKRIR------KKFATKGEALAFEQYTVQNPWQEEKEDRRTL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+  +  SAH  +L    +     +        G+   R    +      E R     
Sbjct: 58  KELVDSWY-SAHGITLKDGLKRQLAMH--HAFECMGEPLARDFDAQMFSRYREKRLKGEY 114

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
                  + +P +    L   R +F    R  E+   NP  ++   + +   +   T + 
Sbjct: 115 ARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTHDQ 174

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + Q          P L       L +G R S++       L     +    K     TV 
Sbjct: 175 ISQLLGECKRHDHPDLETVVRICLATGARWSEAESLRKSQLAKYKITYTNTKGRKNRTVP 234

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKF 292
           +     + L     G+                    F++   + G+   A    H +R  
Sbjct: 235 ISKELYESLPDDKKGRLFSDCYG------------AFRSALERTGIELPAGQLTHVLRHT 282

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G   +     Y   A
Sbjct: 283 FASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFA 316


>gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea]
          Length = 313

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|315650280|ref|ZP_07903352.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487391|gb|EFU77701.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 341

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 99/334 (29%), Gaps = 28/334 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M  + +LP    + +      IY +    G+R    +   +     Y++     T  +  
Sbjct: 1   MATAKKLPSGSYRCQ------IYDYTDDKGKRHYKSFTAATKKEAEYLA-----TSFKLE 49

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +  K   T+     +Y        L+  +  ++    +  I K        IT + I+
Sbjct: 50  ETATVKGNLTVSKATEQYIN-NRLSILSPTTVRTYTGIANNQISKIAKLKIDSITQEQIQ 108

Query: 121 SGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + S     +P +       +  + +       +  +    V+              +D
Sbjct: 109 VFINSIAGTLSPKTIRNVHGLLNAVIRTYRPNFALKTDLPKKVQ-------PDIHIPSDD 161

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             +    +++G++  +      +  +R  + C      +  NI  +K           + 
Sbjct: 162 EVKQLLAYTKGTELEIPILLAAFGPMRRGEICALEASDINGNIVHVKNAMVKAPDRSWVI 221

Query: 239 DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                    + +       +          ++    +  F     KAG+     H +R +
Sbjct: 222 KAPKTYSSDRYIEFPDFVIDLLPKEGKITNLHPNMITDRFANLLKKAGLKHFRFHDLRHY 281

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           SA+I    G     +M   GW T    +  Y   
Sbjct: 282 SASILHAMGIPDKYIMERGGWSTSSTLKTVYQHT 315


>gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
          Length = 418

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 83/272 (30%), Gaps = 19/272 (6%)

Query: 77  EYRKSAHWGSLAVNS---RISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           EY         A +S    I+++      +I  K     + +I  K I S      + P 
Sbjct: 133 EYFDHVQRLRHAHSSDSIIINWKRVHELLKIFAKGDTILFSQIDLKLIESFRMFLLNAPQ 192

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     ++A  + +  +   K A    Y+ ++    V+  + +       T +++ 
Sbjct: 193 GGGKKGVISQNTASTYFSIFKAALKQAFIDGYLTVDIGAKVKGIQGQESRREYLTIDELN 252

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    R A  F   +GLR  D  +     ++    S +   T           
Sbjct: 253 RLAQTPCDPLLKRAA-LFSALTGLRHCDIQKLKWSEIEVFNGSYRLNFTQQKTKGVEYMP 311

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
             +        ++           + +  +   K    +AG+ K    H  R   AT+  
Sbjct: 312 ISEQAFQLCGERKDGEQLVFAGLPDPSWINRPIKKWVVEAGITKHITYHCFRHSYATLQL 371

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             G   + +    G   V   + Y K  D  +
Sbjct: 372 AGGTDIYTVSKMLGHTNVRTTQVYAKVVDAKK 403


>gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 297

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 90/287 (31%), Gaps = 26/287 (9%)

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYF---DQIIRKSGDFDYRKIT--TKHIRSG 122
           T+   ++ ++          + N+  ++       +    +SG       +         
Sbjct: 2   TSFSSILGQFLSYLSLELGESQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKYVHY 61

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + S    P++  +   ++R    + V + YV+ +  +    P R     +  T+ ++ + 
Sbjct: 62  MRSIDLAPATIQRKCAAVRTWINFLVVEGYVSDDVPMPP-LPDRPKRLPQLLTEGEVSRL 120

Query: 183 KSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITV 235
                         + R   E L   GLR S+ C   ++ LQ    S+           V
Sbjct: 121 LGACDGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKERMV 180

Query: 236 ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
            L     + +                +  F++ + + M         + + ++AG+    
Sbjct: 181 PLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQSR 240

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              H +R   A+     G     L    G +++   E Y      +R
Sbjct: 241 LHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQELR 287


>gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 98/311 (31%), Gaps = 23/311 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSIVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                 +         +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKLWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICGIKKNQTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK--IE 388

Query: 334 KNSRRISSVVD 344
            +  +++  +D
Sbjct: 389 DDMEQLAGKLD 399


>gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 337

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 92/332 (27%), Gaps = 39/332 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + + G  I        +  R+     +              P +E     R    TLK 
Sbjct: 4   RKHQDGGWICEIYPNGSKGKRIRKKFATKGEAIAFEQYAAQNPWQEEKGDRR----TLKE 59

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
           L+  +  SAH  +L    +   +S         G+   R    +      E R       
Sbjct: 60  LVDAWY-SAHGITLKDGLKR--QSAMHHAYECMGEPLARDFEAQMFSRYREKRLKGGYAR 116

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                + TP +    L   R +F    R  E+   NP  ++   + +   +   T++ + 
Sbjct: 117 SNRVKEVTPRTLNLELAYFRAMFNELTRLGEWKGENPLKNMRPFRTEEAEMAYLTQDQIA 176

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            F S       P L    +  L +G R S++       L     +    K      V + 
Sbjct: 177 LFLSECQRHEHPHLQAVVKICLSTGARWSEAENLRRSQLSPYKITFTYTKGRRNRAVPIS 236

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSA 294
               + L        T                  F++   + G+   A    H +R   A
Sbjct: 237 KALYESLPENKGRLFTDCYG-------------AFRSALERTGIELPAGQLTHVLRHTFA 283

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     L    G   +     Y   A
Sbjct: 284 SHFMMKGGNILVLQRVLGHTDIKMTMRYAHFA 315


>gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 166

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 14/153 (9%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           + +   E L  +GLR S+     +  +      ++          V L +  +  L    
Sbjct: 2   RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61

Query: 250 IGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                +          F +   Q+M    F    K  A  AG++    S H +R   AT 
Sbjct: 62  EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 121

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + GA    +    G   +   + YT  A   
Sbjct: 122 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 154


>gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405]
 gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405]
          Length = 335

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 82/304 (26%), Gaps = 57/304 (18%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
               +  +  ++  +  + IR++ + + + ++   I + V           SS  Q L +
Sbjct: 30  AKHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAA 89

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  L+K  +          +  ++PK+    +       +         G   RL     
Sbjct: 90  LLFLYKNILGLTIKTPENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIRLL---- 145

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------------KTGTIITVE- 236
             +G+R  ++ R  +Q +      I                             +  +  
Sbjct: 146 YGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHMEKVRLIHE 205

Query: 237 ------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                       +  +       +        +  ++ +     
Sbjct: 206 ADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQARRWRNKETGEQGRHHIDPSVIQRT 265

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 ++G+ K    H  R   AT   +AG     +    G   V     YT   +R  
Sbjct: 266 LHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHVLNRGG 325

Query: 331 LGIK 334
           LGI+
Sbjct: 326 LGIQ 329


>gi|329122255|ref|ZP_08250843.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus aegyptius ATCC 11116]
 gi|327473816|gb|EGF19233.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Haemophilus aegyptius ATCC 11116]
          Length = 341

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 107/324 (33%), Gaps = 22/324 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + ++G     F    G R+R      +          L     + E +N  +K   T++
Sbjct: 4   RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVEQLN--KKPEKTVE 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
             +    K A          ++   +      + G+     +T++ I++          +
Sbjct: 62  QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  ++ +S+      A +  ++ + P ++        + IR  T+++ ++     
Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAKSS--EPKKRIRWITEKEAERLLDSL 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
           +     +   +F L +G R ++        +                    ++ L D  +
Sbjct: 176 NLN-WMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300
            L+      + + ++ +          S   FK    +A +     H +R   A+     
Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW+T++  + Y  
Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318


>gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 343

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 99/308 (32%), Gaps = 42/308 (13%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI- 119
               ++ +      H  +++ N+  S+   F Q I    D +         + +T  ++ 
Sbjct: 7   FAKYLTRFLSEYLPHQRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVI 66

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +    ++K+T ++    L ++R      ++ V    V     LS++  K +      
Sbjct: 67  NYLQWLHNTKKNTSATCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNY 126

Query: 174 WTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            + E ++    Q  +   +G +       +  +G R  +     V  ++ +      + T
Sbjct: 127 LSMEGIKLLLAQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLT 186

Query: 230 GTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           G                          L    + K+  F N   +K+     +   K  A
Sbjct: 187 GKGRKTRIVPLAEAQVDILRSYMEENNLNDPNMMKKPLFFNGRHEKLTREGITYILKIYA 246

Query: 278 TKAG------VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR- 328
             A       + K  S H +R   A     AG     +    G  ++   + Y +   + 
Sbjct: 247 DMANKQQPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKA 306

Query: 329 IRLGIKNS 336
            R  ++N+
Sbjct: 307 KREALENA 314


>gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae]
          Length = 317

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 83/301 (27%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     Y 
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYR 313

Query: 324 K 324
            
Sbjct: 314 H 314


>gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1]
 gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1]
          Length = 279

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 85/277 (30%), Gaps = 21/277 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV---ESRK 127
            +I ++         + N+  ++E    +            ++++ + ++  +   E + 
Sbjct: 7   AIIEDFTVWLENEGKSANTVRTYERELTKYQDWLQQKGLSLKEVSQEDVQQYIRFLEGQG 66

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P +  + L ++R   K+  R E        + ++       I                
Sbjct: 67  RSPVTTDKILGAIRTFSKFIKRPEITTGIEMKTTDK----RTEIECLNGSQCATLLKKVK 122

Query: 188 EGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKL 244
           E    R       LL++G+R S+ C      +  +         TG   T+ L       
Sbjct: 123 EEGNDRNTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTSTGHPRTIPLSVEAKYY 182

Query: 245 LAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           L         K+  F++   +++         K        + + H +R        D G
Sbjct: 183 LECHLATSPVKDAVFVSRANERLTERAIQYILKK------FDVNPHKLRHTFCQQLVDKG 236

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            +   +    G K ++  + Y K         +  ++
Sbjct: 237 VSIEIVSRLAGHKDINVTKRYAKSRIEPFALEEAIQK 273


>gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
 gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17]
          Length = 324

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 84/291 (28%), Gaps = 34/291 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---------------GDFDYRKITTKH 118
           +  + +       L+  +   ++    ++ R                  +  +R + +  
Sbjct: 17  VDGFIRHLASEKRLSPLTCEHYQRDLLRLQRWLQEGYQEYSLNHSQEHSEISWRSLNSHD 76

Query: 119 IRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           IR  V           S  + L+++R  + + +R+  V  +P  ++  PK          
Sbjct: 77  IRRYVAHLSRASLNGRSIARHLSAIRRFYHYLLREGLVDNSPAEAIRAPKSGRRLPVVAD 136

Query: 176 KEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            + +       ++     +    FE L  +GLR ++     +  ++     +K    G  
Sbjct: 137 VDQLTHLLDAQADDPLELRDVCIFELLYSAGLRLAEVAALDLGTVELAAAQVKVTGKGNK 196

Query: 233 ITVELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAK--ATKAG 281
             V              +          ++  F++    +++                A 
Sbjct: 197 QRVLPVGRPALAALQAWLAVRPGLAGAGQQALFVSRRGDRLSHRSIQARLARWGLVKGAD 256

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                H +R   A+   ++      +    G   +   + YT   D   L 
Sbjct: 257 QKLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH-LDFQHLA 306


>gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953]
 gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 327

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 16/300 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     +     A+   +  +  ++E+++ P     +L  L + +  S H  ++
Sbjct: 20  RNGKRIR-RTFSKKHEAVAFEKYVVVNYHEKEWLSKPTD-KRSLSELSTLWW-SYHGQNM 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
                  ++    ++IR   D    +I    I      R       SS  + L  +  +F
Sbjct: 77  DYG--QKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +          L+     +  +  R +  +   +      +G   R+A    L +G 
Sbjct: 135 TALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLDGDNRRVAILC-LSTGA 193

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  ++ +   +H+ +N  +    K G   TV +       L     G             
Sbjct: 194 RWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSGLLFNDAAYLI--- 250

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F    K+  T     ++ H +R   AT     G     L    G  T+ Q   Y  
Sbjct: 251 ----FRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAH 306


>gi|21910994|ref|NP_665262.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876488|ref|NP_795660.1| putative integrase [Streptococcus pyogenes phage 315.6]
 gi|28895320|ref|NP_801670.1| integrase [Streptococcus pyogenes SSI-1]
 gi|50913366|ref|YP_059338.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|21905202|gb|AAM80065.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.6]
 gi|28810566|dbj|BAC63503.1| putative integrase [Streptococcus pyogenes SSI-1]
 gi|50902440|gb|AAT86155.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 362

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 97/364 (26%), Gaps = 34/364 (9%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K   + G   Y  R         G+++R       T   A  + +      +      
Sbjct: 2   IEKYTKKDGTTAYRLRAYLGVDPMTGKQVRTTRQGFKTEREAKRTEVKLVDDFQRQGAWK 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
               TT       + +     ++  ++ +  ++Y+   I    G     KIT    ++ +
Sbjct: 62  NNDKTTFDDAARLWFEQYK-NTVKPSTFLVNQNYYKSTIKPHIGKSQISKITVMACQNLI 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179
                  S+   +++ +  +FK+AV    +  NP     R +                 +
Sbjct: 121 NHLAQ-YSACASYISVINRIFKFAVHLGIIENNPMDRTIRARCTYAHKEKMFYSKEELLI 179

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------------- 222
                   E  +  L +  L Y GLR  ++                              
Sbjct: 180 FLDIVKKEESLEMLLIYRLLAYGGLRIGEAVALYDTDFDFTNNTISITKTLAQTKAGKVI 239

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                K  +       +                  +     +  +      K    +  +
Sbjct: 240 QNPKTKKSSRTISMDQETMRLAKEYMRQSVRPLHGSFRVFNLLTSTVRRRLKRTVERHHL 299

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRIS 340
            K + HG R   A++  +AG  A       G   +      YT  +         + +++
Sbjct: 300 KKINPHGFRHTHASLLFEAGVPAKLAQERLGHAKISITMDLYTHLS--KNQTDNVAEKLA 357

Query: 341 SVVD 344
             + 
Sbjct: 358 DFIA 361


>gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44]
 gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44]
          Length = 337

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 90/328 (27%), Gaps = 28/328 (8%)

Query: 13  KERTRHGKIIYYF-RKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +  +R+ +  + F +   G+R R    LP  +       +   L  +           K 
Sbjct: 4   RFDSRNQRWRFEFDQVIAGQRQRASRLLPKGYTKAEAQKFD--LEETKRLHSIATGVSKP 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV- 123
              ++  +  Y K             S+E+   ++           +  +    I     
Sbjct: 62  EPLIEDAVLLYLKYHAPA------LKSYENIVRELKACYSAYAGKPFSALPAIAISYRPV 115

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + +  + ++    L+ +R   ++A +   +            +       +       
Sbjct: 116 GDDKKLMSAATVRNRLSYLRAACRYAWKHHGLGDRNPAERISMPKVRNERHVYLGRAEFL 175

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +  + R A     YSG+            +     +                  
Sbjct: 176 KICSKIKPGKERAAIRIAFYSGM--------RAAEVGLAKVAYGGDVFELSSQHTKNGQP 227

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
             +     +       +    K      S  FKA A  AG  +   H +R  +A+   +A
Sbjct: 228 RAVPIHPRVAHIVRNPDLWPVKPTKWTVSKAFKAGARAAGFGHARLHDLRHSTASEMINA 287

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G   + +    G K+    + Y+  A +
Sbjct: 288 GVDLYTVGGVLGHKSAVSTKRYSHLATQ 315


>gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735]
 gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735]
          Length = 389

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 76/274 (27%), Gaps = 10/274 (3%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                +  K   +    I   ++      ++  +    +   + + R         +T+ 
Sbjct: 105 AAKPKTKVKPSISF---IEYMKEHIEAEDISEGTLKHKQCTLNALKRFGKIQKLTDLTSN 161

Query: 118 HIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           ++ +  E       S      +   ++        +  + ++P   V+  + + +   P 
Sbjct: 162 NLIAFDEWLHDGTRSDVGIHTYHKHLKKYCHLLYIEGKIKVDPYTQVKFKRGECKEREPL 221

Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           T+ ++Q+ +    +      R  F F  Y+GL   D      +         K       
Sbjct: 222 TEAELQKLRKIKLDDKLDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGS 279

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
                   F  +L       + +     K         +     A K     + H  R  
Sbjct: 280 RIKTASKFFTPILGPAMEVLKKYKFVLPKISNQKANDFLHLIEAALKLNKPLTFHIARHS 339

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT++         +    G K +   + Y K  
Sbjct: 340 FATLALAHDIPIENVSRMLGHKNIRTTQIYAKVL 373


>gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T]
 gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T]
          Length = 291

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 23/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130
           L            L   ++ ++     +  R  G       T + +R+          +P
Sbjct: 11  LRQRMLDDMRMRKLTPKTQSAYIRAVCRFTRYLGRAP-DSATVEDLRNYQLHLVDTGTSP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S    ++ ++  F   +++  +         +P R  + +      +            
Sbjct: 70  MSLNAAISGLKFFFDITLQRGELMARM-----QPVRLPQRLPVVLSREEVARLIAACNNL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248
           + + A      +GLR S+     V  + +   +++    K        L    ++ L + 
Sbjct: 125 KHQTALSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRKDRYAMLSPLLLERLRVW 184

Query: 249 PIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
                           F   N  + ++  Q +   +A A  AG++K    H +R   AT 
Sbjct: 185 WRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAGIDKRVSMHTLRHCFATH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +       + A  G K +D    YT+ A
Sbjct: 245 LLEQKVDIRIIQALLGHKKLDTTVIYTQVA 274


>gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
 gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756]
          Length = 400

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +   +   Y  ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +F  AV  EY+  NPC++VE P +  +  R  T+E+ ++F +F S      +
Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHINV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216
              F + +G R  +      +                                       
Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +       +  +   I   E       +       +   F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K  V             K     + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTKGA 326
               + YT  +
Sbjct: 375 AMTTDLYTHVS 385


>gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 376

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 95/304 (31%), Gaps = 32/304 (10%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR 120
           P   P +L  L+  +       S + ++      +         + G +    IT   + 
Sbjct: 24  PAHDPKSLYALLLRFVVWRQERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83

Query: 121 SGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                            +  +    L  ++V FKW  +Q  +  NP   +E P+ +    
Sbjct: 84  RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143

Query: 172 RPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
           R       T++ + Q      +G + R   E L  +G+R  +  R  V  +       +I
Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWF 273
           +  K      + L +  +  L           I N   K             A   S   
Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263

Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            A     G+ K    H  R   AT   + GA    + A  G  +V+  + YT+ + R   
Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323

Query: 332 GIKN 335
            +  
Sbjct: 324 AVHA 327


>gi|290959113|ref|YP_003490295.1| prophage integrase [Streptomyces scabiei 87.22]
 gi|260648639|emb|CBG71751.1| putative prophage integrase [Streptomyces scabiei 87.22]
          Length = 380

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 97/369 (26%), Gaps = 38/369 (10%)

Query: 1   MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M    +      + R    G+    +    G          ++       A      +  
Sbjct: 1   MAGKRKSRRNFGRVRKLPSGRFQARYPGPDGVLRPADRTFATSTDADRWLAKKRIEIEDG 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKH 118
               P +  TT++   + +  +     L   ++ S+ S  + +I    GD +   +    
Sbjct: 61  RWLDPAEGQTTVRDWAARWLAAVSPQ-LKHKTQASYRSLINSLINPTLGDRELSGLRPIT 119

Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   V S      SA +       +  + + AV  + +   PC  V+ P+         T
Sbjct: 120 VTEWVASMNTRGLSASRIRQAYRVLSQIMRAAVDNDMIPQTPCRGVKLPRMPQTEPHILT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------ 223
             +  +     ++     +A     Y+GLR  ++       +  +               
Sbjct: 180 PLEASRIVRSAAKPHDVLIALL--AYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANG 237

Query: 224 ---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFK 274
                T K+     + +     K L                                +F 
Sbjct: 238 ALVFDTPKSHQKRLLRVGPALAKRLGRHLETLSGGDDALLFTTPGGKPLRYNQWRKAYFD 297

Query: 275 AKATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTKGA----D 327
              + AG+ + + H +R    T  AD  G          G          Y +      D
Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355

Query: 328 RIRLGIKNS 336
           ++       
Sbjct: 356 QVAEAADAW 364


>gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI]
 gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI]
          Length = 314

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 86/288 (29%), Gaps = 15/288 (5%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             K++     ++ P T +  +  +        LA  +   +  +  Q   +       K 
Sbjct: 1   MAKKKVATVRKEVPDTWQEALQGFLFWKQAQGLAERTLTDYRKHVSQFFNRHPKAYNSKN 60

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
               +   +      P++    L +++  F W +++     NP    +R K +   +   
Sbjct: 61  LKSAVLEYMAQ-PVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEGRVVNIE 119

Query: 175 TKEDMQQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQ 227
            ++  +           G +        L +G+R  ++    V  +           +  
Sbjct: 120 EEKLARLLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSLLVDDINLRSLEVCIRSEIA 179

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKA 280
           KT T  T+ +     +++      +   + N+     ++         +    +  + + 
Sbjct: 180 KTRTTRTLPISPVTAQVIRELLQSRHPAWKNSTPVFCSSEGGKMTDLKWGDRLEVYSKQL 239

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           GV    + +R   A      G     L    G   +   + Y     +
Sbjct: 240 GVWIRPYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQ 287


>gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102]
 gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102]
          Length = 215

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198
           ++ W       A NP   ++ PK + +     T+  +    +        G + +   E 
Sbjct: 1   MYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETPHGLRDKALLEV 60

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITVELPDGFMKLLAM 247
           +  +GLR +++ +  +  +  +  SI+T                   VE      + L +
Sbjct: 61  MYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLL 120

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                +  F++  +  ++     +  K  A  AG+ + S HG+R   AT   + G     
Sbjct: 121 KNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLRHAFATHLVNHGVDLRS 180

Query: 307 LMATYGWKTVDQAETYTKGAD 327
           +    G   ++  + YT  A+
Sbjct: 181 VQMMLGHSDINTTQIYTHVAN 201


>gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 382

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLASLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +              E
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKNE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +   +  +E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|239981603|ref|ZP_04704127.1| integrase [Streptomyces albus J1074]
          Length = 382

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 110/382 (28%), Gaps = 40/382 (10%)

Query: 2   TPSLRLPPFV-TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            P  R P    T  + + G+     Y  +  G R R     ++               K 
Sbjct: 3   APRKRNPNGAGTITKRKDGRYQCAVYVLQPDGTRARKFAYGKT--WAECDVKRRELLAKV 60

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           +       K   L   +  +  +       +++   +E++    ++   G      +   
Sbjct: 61  DQGVPVPTKSAKLSEWLPYWLDNVIKPRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVA 120

Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R  +   +   T ++A +    +R     A R+E +  N    VE P+     ++PWT
Sbjct: 121 DVRRFIVRLEKETTAATAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPWT 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
            ++   F +   +      AF   +  GLR  +        L  +   +  ++       
Sbjct: 181 LDETLDFLAASRKDP-LYAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRG 239

Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                        +     ++ A         F     +++   
Sbjct: 240 VLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPR 299

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                F   A  AG+     H  R  +AT+   AG     +M   G   +      YT  
Sbjct: 300 NVYRSFTRVAESAGLRVIRLHDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHV 359

Query: 326 A-DRIRLGIKNSRRISSVVDSD 346
             D  R  I +  R+     S 
Sbjct: 360 VQDTQREAISHMDRLLKRRPSR 381


>gi|167620939|ref|ZP_02389570.1| putative integrase/recombinase [Burkholderia thailandensis Bt4]
          Length = 342

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 102/332 (30%), Gaps = 13/332 (3%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
                R+      +            + +++     +  +++    + TT   L+  Y  
Sbjct: 12  YQAQVRRKGYP-TQTKTFETKKAAEKWATSVENEMNRGSFVDRSELETTTFGELLDRYAV 70

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138
                     + +       +            + +    S    R    +P++  + + 
Sbjct: 71  EVTTAKRGRETEMVRIRALKK--HPLAARTLASLRSMDFASYRNERLKTCSPATVKREMV 128

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +  +F  A  +  + +   L+     R+ +      ++D +      +  S+       
Sbjct: 129 IISHVFTHANNEWSLPVGNPLAGIAKPREKDHRERRLRDDEESRLVEAAHNSRAATLSFC 188

Query: 199 L---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           +   + +G+R  +  +   + +     +I+   T       +P       A+  + +   
Sbjct: 189 IVLAIETGMRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIH 248

Query: 256 FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    +    S  F+    +AG V    H +R  +A+  A     A  L    GWK
Sbjct: 249 GGRLTSFYDSR-GLSAAFRRACERAGVVGLRFHDLRHEAASRLAPH-MPASTLAKVMGWK 306

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           T+  A  Y    D+    +   R++S+    D
Sbjct: 307 TLQMAMRYYNPTDQE--LVTAVRKVSAPSGPD 336


>gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
 gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016]
          Length = 320

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 53/300 (17%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
                   A  +  ++ S+  Q I          +  KH+   +         A +    
Sbjct: 11  DHMRTRHYATKTIQAYISWIKQYIYFHRMAHPSTLNEKHVEEFLTHLAVEQKVAAKTQAL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  +           +N  +  ++     +     TK +++ F        + +L    
Sbjct: 71  ALNSVLFLYREYFRTPLNNEIKFQKSLLDRKLPVVLTKPELRAFIQH--IDPRYKLHIML 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  SGLR  +  R  +Q +  +  +++  +                              
Sbjct: 129 LYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTVTLAKELYPLLKEQEALALRYY 188

Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                    E+   +  L     + ++       +  +N     
Sbjct: 189 QKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLLRRHHINEQALQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K  A  AG+ KS   H +R   AT   ++GA    +    G   V   + YT   +R
Sbjct: 249 RAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVLER 308


>gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7]
 gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7]
          Length = 324

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 88/322 (27%), Gaps = 45/322 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
            ++   T++  ++++  +    SL  +S    E   +  I    G    +K+T   I+  
Sbjct: 4   EKQSNNTVEEYMTKWLINTKRPSLKRSSYDRVEQSLNYQIFPAIGKIKLKKLTADDIQMM 63

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +   + + S+  +   +++     AV +  +  NP LSV  PK              Q
Sbjct: 64  LNNLSERSSYSTTKKAYVNLKSCLDLAVLKGDIKKNPILSVVLPKNNKSDETVVYYSPEQ 123

Query: 181 QFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                    S         +      F+L +GLR  ++       +      +    + +
Sbjct: 124 ARAIAAEAISTYNNGSFKYRYGYFIVFMLNTGLRVGEALALSWSDVDFTNKIVYVHNSVS 183

Query: 232 I------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQK---M 264
                                      V L    +  L                +    +
Sbjct: 184 SVKTRGDSSMKYEKIVNSPKSRNSVRYVPLNKTALDALVKIHAIMGDNDRIVTTENGLLV 243

Query: 265 NATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + +             G+N      H +R   AT+    G     +    G   +     
Sbjct: 244 DPSAIHRTMSRILKNCGINGKKDIVHALRHTFATLLLRQGTDIKVVSEILGHSDISITMK 303

Query: 322 -YTKGADRIRLGIKNSRRISSV 342
            Y    +  +       ++  +
Sbjct: 304 FYYHVIEEQK--KTAMTKLDEI 323


>gi|226951511|ref|ZP_03821975.1| phage integrase [Acinetobacter sp. ATCC 27244]
 gi|226837747|gb|EEH70130.1| phage integrase [Acinetobacter sp. ATCC 27244]
          Length = 402

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 105/386 (27%), Gaps = 55/386 (14%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTG------- 53
           T    LP      R R GKI   F+    R    L                         
Sbjct: 4   TSRTGLPTG---TRARSGKIQINFKWNGKREWFTLALTDTPANFSKAAKIREDFVNKAKY 60

Query: 54  ----------------STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
                                   + P     T      EY    +       ++  + S
Sbjct: 61  GILKIEDIEAVTVKPFKKADAAQESLPASHGPTFAQYAQEYL--YNLSDHKHGTKKKYLS 118

Query: 98  YFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI 155
             +++ +    D     I+++ +RS V  R+ +   +    L  +R  F+ A   E +  
Sbjct: 119 ILERLWMPLFADMPINTISSQMLRSAVNGREWSSAKTRNDALIPLRGAFELANDDEIIDK 178

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSC 210
           NPC  ++  K +     P+ + + ++  ++  E            F    ++G R S+  
Sbjct: 179 NPCDRLKNQKTQETEPDPFNEIERERILNWLREKYLADYPTVYWYFVVAFWTGCRPSEII 238

Query: 211 RAGVQHLQNNIFSIKTQK------------TGTIITV------ELPDGFMKLLAMTPIGK 252
               Q +      I   K            T     V            ++LL       
Sbjct: 239 ALTWQDVDFLNKQIHINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEH 298

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATY 311
                   ++       S  F A     G+     +  R   AT+    G     + +  
Sbjct: 299 VFICDETGEEFTTQKSLSEKFVAALKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQL 358

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSR 337
           G   V   + Y K  +  +   + ++
Sbjct: 359 GHSLVMLMKRYAKWINSDKNKEEIAK 384


>gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602]
 gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602]
          Length = 328

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 16/302 (5%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR    +       +   +      + +++        L  L+S +        + 
Sbjct: 21  DGKRIR-RKFNTKGEAQIFERYIIARYQDKAWLDKS-ADRRKLTELLSLWWVYHGKHHVR 78

Query: 89  -VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLF 144
               R    S  + +    G     ++T K I   R  +      P+S  +    +  +F
Sbjct: 79  GEIDRSRLHSIVNHLSE-MGVTRADQLTHKAIIDYRIMMLDLGLKPASVNRHQAILSGMF 137

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +              +  R+      +   D  +      EG   ++A    L +G 
Sbjct: 138 TKLISAGEYHNAHPFREVKKLREGTTEMAYLTTDEIKALLQTLEGDNLKVAQLC-LATGG 196

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  +      +H+  N+ +    K G   +V + D  ++ +     G+            
Sbjct: 197 RWGEVSNLKGEHIIKNVITFMKTKNGKRRSVPVSDELVRAIKTKASGRLFVS-------- 248

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           N     +  +         ++AH +R   AT     G     L    G  T+ Q  TY  
Sbjct: 249 NYNTVRMTLRKVKPDLPKGQAAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYAH 308

Query: 325 GA 326
            A
Sbjct: 309 FA 310


>gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 320

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    V        +   R +              +       E    G + R  
Sbjct: 99  LFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKGRRDRAM 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++ +  V  +Q        +  G                 I + L   
Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L         +    +    ++A       +A A KAG+       HG+R  +AT +
Sbjct: 219 GHHLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|317501739|ref|ZP_07959926.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896861|gb|EFV18945.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 350

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 105/361 (29%), Gaps = 39/361 (10%)

Query: 12  TKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            K++T+ G     FR     G++ +       T   A              +        
Sbjct: 4   YKDKTQ-GTWYVSFRYIDWTGKKTQKLKRGFKTKKEALNYEKEFIRKTAADMKMEMNS-- 60

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
                I  Y +      L  NS  + +      I+   G     +IT   I     + + 
Sbjct: 61  ----FIQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNTIQE 115

Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKS 184
              S          +  LF  A +   +  NPC  V++  K     +  WTK +  +F +
Sbjct: 116 KGYSKTYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIA 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQK 228
               GS+  L FE L ++G+R  +                        ++        + 
Sbjct: 176 GIEPGSEDYLIFEILFWTGIREGELLALSLLDFDMSGNLLHINKTYNRIRKRDVIDTPKT 235

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             ++ T+++P+   + +         F  +     + A       K       V     H
Sbjct: 236 ENSVRTIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTSVKPIRVH 295

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R          G     +    G K +     TY        L     ++++ ++D+ 
Sbjct: 296 DIRHSHVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNK 349

Query: 347 D 347
            
Sbjct: 350 R 350


>gi|296169264|ref|ZP_06850912.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896069|gb|EFG75740.1| prophage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 363

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 107/345 (31%), Gaps = 34/345 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + +  T+ G + Y  +     R +      +        A   +         PR     
Sbjct: 3   IKRRETKDG-VRYDVQWRLPDRSKRKKSFRTEREARQFEARLVTDSAAGVRVDPRGGKIL 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L+ +   +  S     L+   R  +E  +  +I  + G +   +I  + I+  V +   +
Sbjct: 62  LRNVYRSWLASR--PDLSAKVRRGYEDNWRLRIEPQFGSWPIARIDHESIQRWVNAMSAS 119

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              P +     + +++    AV ++ +   NP    + P  +       T  ++      
Sbjct: 120 GLGPRTVRWTHSVLKMTLDRAVEEDQLLGKNPASRTKFPPMRQATHVYLTVGEVATLAQT 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231
                   L      Y+GLR  +     V+ +      I+ +++ T              
Sbjct: 180 CGAQGDVVLLL---AYTGLRFGELTGLNVEDVDLGARRIRVRRSMTQVGGKLVEGNPKSQ 236

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN- 283
               +V +P+  M  L      +          K +      W     ++   T+ G + 
Sbjct: 237 AGRRSVPIPERLMPALKARLDARPCGAPAIASPKGSRLSLENWKRAVNWRKSVTEIGRDN 296

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327
              H +R   A++S  AGA    L    G  ++      Y    D
Sbjct: 297 LRVHDLRHTYASLSRRAGADLRLLQKAMGHASITVTAHTYADLFD 341


>gi|295189228|gb|ADF83415.1| putative integrase [Lactobacillus phage LBR48]
          Length = 394

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 102/356 (28%), Gaps = 46/356 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R    K   YF+  HG+R         T   A  +A        +  +    K  +   
Sbjct: 6   KRGDSWKAKVYFKDIHGKRTSRSQEGFRTKKEAEAAARVMED-TYKNGSDVGDKNISFSD 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---------VE 124
              ++        L+  +   ++   + I    GD  +RKI T   +            +
Sbjct: 65  YFQKWFHIFREPGLSDTTIARYQYTINVIDEYFGDTLFRKIKTADYQEFLNWFGNGNGKD 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED---- 178
           ++ H  ++A +  T +R   + AV    ++ +   +        +T  I+  + +D    
Sbjct: 125 AKPHAKATADKINTHIRAAVRNAVNDSVISRDFTQNTHVVYDSSRTREIKWLSYDDAAKL 184

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
                +               L +G+R  +        + +    IK  KT         
Sbjct: 185 YNYTLNHLEGIDVVPYMVLTALLTGMRQQEIAGLTWDDIDSKGGFIKITKTWNWTKRDFG 244

Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSI 271
                              I  +L     + L +         +      +  ++   + 
Sbjct: 245 PTKNPASVRTISIDRNLVNILTKLQYEQKRYLKVNDKTNPHSLVFLSRYNRVPSSKALND 304

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
                   A +N     HG+R   A+I      +   +    G + +    +TY  
Sbjct: 305 RLHELMKDADINIYLRFHGLRHTHASILLYQKMSIAYISHRLGHQDIATTTKTYLH 360


>gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
 gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum Ba4 str. 657]
          Length = 357

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 81/295 (27%), Gaps = 26/295 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125
            T    I  + +      +   + + +++   +      +     I   HI++ V+    
Sbjct: 68  ITFAEFIDIHLQHISLH-VEPYTLVGYKTALKKFKSLY-NMKICDIKQIHIQNCVDDLVK 125

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 +   ++  +  +F  A+ Q  +   NP  ++     K +  +    +       
Sbjct: 126 MNLKDYTIKTYIQKLTAIFNSAINQYQIIITNPVKNIRYIPNKNKNEKKVLNDTELNDLL 185

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
              E  Q  +        GLR  +       ++     +I   K                
Sbjct: 186 SKIENKQYYIMTLLASKCGLRIGEILGLTWDNIDEINKTIIVNKQWKLNKDGKFGFGELK 245

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSAHGV 289
                      K++       +     +++        S     + +  + G + S H +
Sbjct: 246 SKNSYRKVPCPKIIFTYLKTYKKVVNIDNRIVNYKNTISTASNIRREYKQLGYDISIHEL 305

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R   AT    +           G   ++     Y+   D     ++++  I   +
Sbjct: 306 RHTYATKLISSRMDFKTAANILGH-DIEMTMKIYSHVTDE---MMEHATNIIEKI 356


>gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 284

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 80/273 (29%), Gaps = 15/273 (5%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              ++  +  R     L  L+  +    H  +L   +    + +  + +   GD    ++
Sbjct: 3   NANKKEWSDKRLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKAVSQL 59

Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T + +      R     + ++  + L  +  +F   ++ E  +    L    P  +    
Sbjct: 60  TKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLHGLPPLAEKNPG 119

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +   +          G   RL     L +G R  +        + NN  +    K G 
Sbjct: 120 MTFLDAEEINRLLAVLSG-DERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             T+         ++     +     +    K++  +F    +         ++ H +R 
Sbjct: 179 KRTIP--------ISAELEKEVKTNASRKLFKVDYGKFCETLRMVKPDLPRGQATHVLRH 230

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A+     G     L    G   + Q   Y  
Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263


>gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
 gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787]
          Length = 400

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  T+E+ ++F +F S      +
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHINV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216
              F + +G R  +      +                                       
Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +       +  +   +   E       +       +   F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKMKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K  V             K     + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVEKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTKGA 326
               + YT  +
Sbjct: 375 AMTTDLYTHVS 385


>gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 354

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 77/310 (24%), Gaps = 25/310 (8%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +        + AY   LT        ++            I  Y         A  +   
Sbjct: 41  IERGGGPNTLDAYRRDLTDLAEFLAPVSLAEADT----SAIRAYLADLSARGFAATTVAR 96

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
             S   Q  R      +R      +  G +  +  P    + L+         +   +  
Sbjct: 97  RLSALRQFYRFLFAEGHRADDPAAVLEGPKRGRPLP----KVLSV--AEVTRLIDTAHAR 150

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA 212
                      +  EG    T                 R+A    L   SGLR S+    
Sbjct: 151 AAQAEESLNAGQGGEGQGEETPGAGAAKAGRAELLRLRRVACMVELLYASGLRVSELVAL 210

Query: 213 GVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQ 262
                +    +I  T K      V L       +               +  F   ++  
Sbjct: 211 PAAAARAQGEAILVTGKGRKERLVPLSGPAKVAMQAFLAARRAAGLEASRWLFPSGSESG 270

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +   Q +   K  A  AG++    S H +R   A+     GA    +    G   V   
Sbjct: 271 HVTRQQAARDLKELALAAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTT 330

Query: 320 ETYTKGADRI 329
           + YT   D  
Sbjct: 331 QIYTHVLDER 340


>gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
 gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA]
          Length = 297

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 28/297 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126
           T   +  ++  S H   +A ++  S+      I          +I    I+  V+   S+
Sbjct: 3   TFYDVSMKWF-SLHELEIAESTAYSYSKNLRFINEYFHGKSIYEIDKNDIQDYVKFLYSK 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +   +   + + F +AV  E +    NPC  +  PK + + I P+++ +M++   
Sbjct: 62  GCKTDTITNYFKLINMTFNYAVDYEILPKGANPCYKIVIPKTEKQEINPFSETEMEKILK 121

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------T 231
                            +G+R  +      + +  N   IK QKT               
Sbjct: 122 VKCL-PWLYAGEFIAYRTGMRKGEIYALRKKDIDFNGGFIKVQKTQSLTKNAKVILKEPK 180

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVNK-S 285
             +        K+L            +      N         S  F      A V + +
Sbjct: 181 SKSSRRRIACDKILMNFLWNLSNRSESVFLFPNNDTFFVPWNISSAFTDVCEMAKVPRRT 240

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRIS 340
            H +R   AT+          +    G  ++     TY+    D     +    +I+
Sbjct: 241 FHELRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSHLIPDMQHTAVNVFDKIA 297


>gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5]
 gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 382

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +              E
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKNE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +   +  +E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAALENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLKEGIILKDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
 gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM
           17393]
          Length = 330

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 76/263 (28%), Gaps = 12/263 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH 128
             L+  +  +         +   + S   Q+++K         T     ++       K 
Sbjct: 53  DRLLEIFLSAKQVEGCTTPTIKYYSSTIKQLLKKMPKKVVDYSTEDIRAYLAVFQRKNKS 112

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +           F W   ++Y+  +P   + + K  T+     T E+++        
Sbjct: 113 SKVTIDNIRRIFSSFFAWLEEEDYIIKSPIRRIHKVKTGTQVKEILTDENIEH-LRDNCI 171

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAM 247
             +     + L  +G+R  +  +   + +  N    I   K      V         L  
Sbjct: 172 KIRDLAMIDLLASTGMRVGELVKLDREDINFNERECIVFGKGNKERIVYFNARAKIHLQQ 231

Query: 248 TPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
               ++               ++  +      +    +A +     H  R+  AT++ D 
Sbjct: 232 YLSTRKDRNKALFVSLAKPHNRLQISGVETRLRKIGRQAKIVRVHPHKFRRTLATMAIDK 291

Query: 301 GATAHELMATYGWKTVDQAETYT 323
           G    ++    G   +D    Y 
Sbjct: 292 GMPVEQVQKLLGHVKIDTTMHYA 314


>gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 397

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 71/266 (26%), Gaps = 18/266 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +++      L  +++ +  S    +     +  +  +T + + S     +          
Sbjct: 114 FKQEVMTSGLKESTKRNHLSTLALLQDFKKNVTFSDLTFEFVSSFEYFLQSKGYHTNTIA 173

Query: 138 TSMRVLFKWAV-----RQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFWSE 188
             M+ L +            +        +                 K +  Q    + +
Sbjct: 174 KHMKHLKRHINVAINKEYMDIQKYAFRKYKIKTVENGHTHLAPEELEKMETLQLTGRYIK 233

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +   AF F  Y+G+R SD      +++               I           L   
Sbjct: 234 YQKTLDAFLFCCYAGMRYSDFVNMKPENIVEMHQET--WLIYKSIKTGTEVRLPLYLLFN 291

Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                   K    + +     + +  +         AG+    S H  R  +AT+    G
Sbjct: 292 GKGIQILNKYQANLQDFFHLRDNSNVNKELIIITRLAGLSKKVSFHTARHTNATLLIYNG 351

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G K+V   + YT   D
Sbjct: 352 VNITTVQKLLGHKSVKTTQIYTNVMD 377


>gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989]
 gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989]
          Length = 328

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 84/302 (27%), Gaps = 15/302 (4%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RI+     +          L       +      +   +L  L+  +  S      
Sbjct: 20  RNGKRIKRIRNTKKECRLLEADILREFASVPDKFA---RDNRSLIDLVDLWYSSHGHTLK 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145
               R  +      +  +  +    + T++      + R    + S+       +R +F 
Sbjct: 77  DAKYR--YSRTL-ALCDRLSNPSVSEFTSEVFSIYRQRRLSDVSVSTVNHETRYLRSVFN 133

Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF--LLYS 202
              R  +    NP  ++     +   +   T +   +      + S    A      L +
Sbjct: 134 ELKRLGFYYGDNPLANIRTFPERQRELSFLTYDQRDELLYQCEQSSNTHCAPVVRLCLAT 193

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R S++      +L +N       K G    + +       L        T  + +   
Sbjct: 194 GSRWSEANGLKASNLFDNRVIYSDTKNGKQRVIPITSKLSSYLRSQAFPTNTGRLFDSC- 252

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               + F    +  + +    +S H +R   A+     G     L    G   +     Y
Sbjct: 253 ---RSAFRKALERTSIELPQGQSTHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRY 309

Query: 323 TK 324
             
Sbjct: 310 AH 311


>gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 346

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 84/307 (27%), Gaps = 45/307 (14%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---------ESRKHT 129
                 + N+  S+    + +     + +     +IT + +               R  +
Sbjct: 20  PEEQKCSQNTIRSYRKSLELLFDFVKEKNSVALNEITFEMMDRSTISEFLSYLETERNCS 79

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QF 182
            S+    L  +R  FK+A +++   I     +++ KR  +                  Q 
Sbjct: 80  ISTRNHRLHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQPETIVEHMSEDAVQAILEQP 139

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDG 240
            +   +G +      FL  +G R  +     +  +Q   +   T         ++ L D 
Sbjct: 140 DTCTEKGKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVTIHGKGAKTRSIPLRDD 199

Query: 241 FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWF----------------KAKATKAG 281
            ++ L         ++  F +     +   Q                     +    +  
Sbjct: 200 VVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKLVAKYGVQARKICKEVP 259

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            N   H  R   A I    G     +    G   ++    Y      ++      + +  
Sbjct: 260 ENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKR-----KALEK 314

Query: 342 VVDSDDP 348
            V  D P
Sbjct: 315 AVPVDSP 321


>gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 109/312 (34%), Gaps = 24/312 (7%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y+ K  G   +L  P +ST    +++         E +   RK   T   L  ++  S  
Sbjct: 23  YYWKPGGTTEKLA-PADSTKAEVWVA--------YEKVIEGRKNILTFSQLWKKFLNSTD 73

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRV 142
           +  LA  ++  + ++   ++   G+ + + I  +H+R  +++R       A    +SM  
Sbjct: 74  YADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEHVRRYMDARGKKSRVQANHEHSSMSR 133

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +++W  ++ +V  NPC+ V++  +         +E +  +          + A E     
Sbjct: 134 VYRWGYQRGFVPGNPCVGVDKYPKPQRDRYITDEEYLAIYDCATD---PVKAAMEIAYLC 190

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINND 260
             R SD  +     + +    I+  KTG        D       L               
Sbjct: 191 AARVSDVLKMDWNQIMDKGIFIQQGKTGVKQIKAWTDRLHSAVNLCRKSGEDGAVIKTMY 250

Query: 261 KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            ++ +   F+  ++     A       ++ + H ++    +    +G    +     G K
Sbjct: 251 GERYSYKGFNEAWRKARNAAAEKIGRPLDCTFHDLKAKGISDYEGSG---RDKQKFSGHK 307

Query: 315 TVDQAETYTKGA 326
           T  Q   Y +  
Sbjct: 308 TESQVLVYDRKV 319


>gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 95/263 (36%), Gaps = 16/263 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            +I  +        L + ++ ++    +Q +    +     +  + +   V+       S
Sbjct: 22  QVIQLWL-----SGLRLGTQKTYARTVNQFLGFV-EKPLVNVLLEDLTRWVDLLFIKDYS 75

Query: 133 AIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                  ++ ++ LF +A +  Y+ +N   +V+ P           ++   +     ++ 
Sbjct: 76  QNSIALKISIIKSLFSYAWKIGYLPLNIAKAVKAPSSVNALHERILEQPEVKALIEAAKE 135

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFMKLLA 246
            + R     +  +GLR +++     + L+          T K G + TV + D   K L 
Sbjct: 136 GRDRTILTLIYATGLRATEALSINWRDLRPRKQGGQATITGKGGKVRTVLISDNLWKELK 195

Query: 247 MTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
             P  ++T   F      +++  Q     K  A KAG+  + S H +R   A  S + G 
Sbjct: 196 KLPRSQKTEAVFTTRFGNRLDRHQLHRIVKKTAEKAGINEHTSTHWLRHAHACHSLENGC 255

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               LM + G  ++     Y   
Sbjct: 256 DIDVLMRSLGHSSLTITSKYLHA 278


>gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
 gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516]
          Length = 326

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 88/311 (28%), Gaps = 48/311 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107
           P  L   +  Y ++      + N+   +    + +I+                       
Sbjct: 5   PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSS 61

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159
           D D        +            +            +S+R  +K+ +    + I NP  
Sbjct: 62  DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++ PK+        T ++                 ++        L  G+R S+     
Sbjct: 122 LLDSPKKNIRQPVYLTLDESLNLLKVILREKDEEIKARDYCITVLFLNCGMRLSELSSIN 181

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268
           + H++ N       K     TV L D  +  L      +     +       + +M+   
Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDALDNYLKIRPEIDNDALFISKKRNRMSNRA 240

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
                +      G +    S H +R  +AT+    G      L    G ++V   + YT 
Sbjct: 241 IQYRIEHYLKAGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 325 GADR-IRLGIK 334
             +  +R  + 
Sbjct: 301 VDNNSLRSAVN 311


>gi|170741019|ref|YP_001769674.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168195293|gb|ACA17240.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 338

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 88/318 (27%), Gaps = 15/318 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73
           R R        R+     +            A+               + R+    T+  
Sbjct: 5   RKRGTSWQAQVRRDGFPPLS-RSFRTKAEAVAWGRDREREIEGGSLSVATREPKGLTVAE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           ++  Y+ +         S  S            G    R+++   +    + R       
Sbjct: 64  ILRRYQAAVSCKKRGARSERSRIGTLQ--AHPIGQAQVRRLSASMVARYRDDRLEIVAGD 121

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S  + LT +R   + A R+  +    NP   ++ P+      +    E  Q         
Sbjct: 122 SVRRELTILRHCLEVARREWGIPLPSNPVGQIKLPEPSKGRQQRLEAEQAQALILALKRS 181

Query: 190 SQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               L     L   +G+R  +       ++  +      + T    +  +P     L   
Sbjct: 182 RVWYLRPLVNLAIETGMRRGELLTLRWANVDLSSRIAYLETTKNGHSRTIPLSPGAL--- 238

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             + K     +     +      + ++    +AG+     H +R  + +   + G +  E
Sbjct: 239 -SVLKGLPRTDARVFPLTGNAVRLAWERLRNRAGLPELRFHDLRHEAISRFFEIGLSIPE 297

Query: 307 LMATYGWKTVDQAETYTK 324
           +    G +       YT 
Sbjct: 298 VALISGHRDTRTLMRYTH 315


>gi|254438179|ref|ZP_05051673.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253625|gb|EDY77939.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 376

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 99/334 (29%), Gaps = 16/334 (4%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +      K        + +R  L      T   A   A          +   R    + 
Sbjct: 34  VRVSQGGSKSFVVVHGVNRQRETLGRYPTITLKQARGQAKKLLAQITLGVQQNR--TISY 91

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K     + ++    +   N+   +    D   R  G     +IT   I++ +   K + S
Sbjct: 92  KDARDLFLEACETKN-KKNTVDYYRKRLDAHFR-FGRKRLDEITRTDIQTRIRKIKTSSS 149

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   +R L  WAVR++YV  +P  S++ P +        T +++ Q      E   
Sbjct: 150 EQNHAFVVIRTLMNWAVREQYVDQSPIASMKPPTKPQARDHVLTDQELIQAYKVSLEHPY 209

Query: 192 PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           P      LL  +G+R S+        + +   +I      T         +  L+     
Sbjct: 210 PFGPIISLLVLTGMRRSEVASMRWDWISHGERTITIPADVTKNKRVQTLPYADLVEAVLE 269

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK--AGV----NKSAHGVRKFSATISADAGATA 304
                  +    +         +     +  A +      + H +R+  AT  A  G   
Sbjct: 270 TIPEIGPHLFPSRSETGTVFNGWGKSKERFDASLENIEPYTLHDLRRTFATTHAKIGTPI 329

Query: 305 HELMATYGWKTVD---QAETYTKGA--DRIRLGI 333
           H         +      A  Y + +  D +R  +
Sbjct: 330 HVTEKLLNHISGTISGVAAVYNRHSYMDEMRTAV 363


>gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 427

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%)

Query: 57  KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            +E      +   TL  L     EY++     +L+  +  +F+  +   +      D   
Sbjct: 95  LKERYMQQSRPMPTLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 154

Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
                +            +    +  SS    L  +  + + A+++ YV  +P     +E
Sbjct: 155 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 214

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +     + +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 215 TPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 274

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +           +   +   + + F+   +    
Sbjct: 275 GRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP-SNSNFNRTIQEICI 333

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y +   + ++  
Sbjct: 334 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 392

Query: 334 K-----------NSRRISSVVDSDDP 348
           +             R+   +  S  P
Sbjct: 393 EMQPLMGSEHTRVLRKALRLCPSRTP 418


>gi|291453463|ref|ZP_06592853.1| phage integrase [Streptomyces albus J1074]
 gi|291356412|gb|EFE83314.1| phage integrase [Streptomyces albus J1074]
          Length = 383

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 110/382 (28%), Gaps = 40/382 (10%)

Query: 2   TPSLRLPPFV-TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            P  R P    T  + + G+     Y  +  G R R     ++               K 
Sbjct: 4   APRKRNPNGAGTITKRKDGRYQCAVYVLQPDGTRARKFAYGKT--WAECDVKRRELLAKV 61

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
           +       K   L   +  +  +       +++   +E++    ++   G      +   
Sbjct: 62  DQGVPVPTKSAKLSEWLPYWLDNVIKPRRKLSTYDKYEAHARLYLVPLLGAKRLESLGVA 121

Query: 118 HIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R  +   +   T ++A +    +R     A R+E +  N    VE P+     ++PWT
Sbjct: 122 DVRRFIVRLEKETTAATAKESHRVLRSALSSACREELITRNVAKLVEPPRTVNRELKPWT 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
            ++   F +   +      AF   +  GLR  +        L  +   +  ++       
Sbjct: 182 LDETLDFLAASRKDP-LYAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRG 240

Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                        +     ++ A         F     +++   
Sbjct: 241 VLYDDDPKSRRRRAVPLPALCIAPLRWHRMRQAAARVKAGEWQESGYVFTTRTGRQVEPR 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                F   A  AG+     H  R  +AT+   AG     +M   G   +      YT  
Sbjct: 301 NVYRSFTRVAESAGLRVIRLHDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHV 360

Query: 326 A-DRIRLGIKNSRRISSVVDSD 346
             D  R  I +  R+     S 
Sbjct: 361 VQDTQREAISHMDRLLKRRPSR 382


>gi|260589353|ref|ZP_05855266.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|260540434|gb|EEX21003.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 365

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 111/358 (31%), Gaps = 32/358 (8%)

Query: 5   LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAY----MSA-----LTG 53
           ++LP          GK    +  RK  G RI    P +   +  Y     +A     L  
Sbjct: 1   MKLPNGYGSVVKLSGKRRKPWMVRKTTGYRI---DPVKEKKVNEYIIIGYAATKTEGLQM 57

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                      +    T   +  E+ K   + +++ ++   +++ +        +  ++ 
Sbjct: 58  LADYNRNPYDTKAAKMTFDEVYEEWSK-KKFPTVSESNIKGYKASYKT-CGILYNRVFKD 115

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +    ++  +++      +  +       L+++A++ +    +    VE  + K      
Sbjct: 116 LKLADLQQVIDTCGKNYPTLKKIKILFNQLYEFALKNDICNKDYSTFVEISQYKDRNPNK 175

Query: 174 WTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T+    + +    +  +  +       LLY+G R S+      +++           + 
Sbjct: 176 HTRTKFTKEEVAKVWTMKEDKYYQIILMLLYNGTRISEFLDLKKENVHLEEQYFDVIDSK 235

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN 283
           T   +       KLL        +                     +  ++     + G++
Sbjct: 236 TENGIRKVPIADKLLPYYKDWYNSCPDCEYLLHTEDGKRFLYRNYYDSYWTPLVEQIGID 295

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTKGADRIRLGIKNSRR 338
           ++ H  R    ++ ++AG     +    G  +       + YT    +  + +    +
Sbjct: 296 RTPHCTRHTCISMLSEAGVQDTTIKKIVGH-SGAMTLTEKVYTHLDMQ--VLVDAINK 350


>gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2]
 gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2]
          Length = 320

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 13/268 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
               ++  S     L+  +   +    +  +R      +  +TT  IR  + +R+     
Sbjct: 45  AAYKQFFVSKKIQGLSSGTLNLYMQTINLFMRSV-RKSFSDVTTNDIRLFIANREMIDRV 103

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +  +    +   FKW   +EY+A +P   VE  K      + +++ ++++ +S    
Sbjct: 104 SKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENIKVPKRRKQEFSELEVEKLRSAT-A 162

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            S+  L  E LL +G R S+        + Q N       K     T+ L       L  
Sbjct: 163 NSKEALIIELLLSTGCRVSELVSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALNH 222

Query: 248 TPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
                          +     M +       K    +A V N   H  R+ +AT++   G
Sbjct: 223 YLKDVPHITGPLFFGQTVGKEMTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRHG 282

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +M   G +++D    Y+   D  
Sbjct: 283 MPIELVMNFLGHESIDTTLKYSMIGDEE 310


>gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23]
 gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23]
          Length = 390

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  ++ +++     SL  ++R +  S  + +     +  +  +T + + S     +    
Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165

Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      ++            + K           E++ +F++   
Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   RL     AF F  Y+GLR SD       ++                 +E+     
Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297
            L     I     + ++          S   K     AG+       S H  R  +AT+ 
Sbjct: 286 LLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA    +    G K+V   + Y    D
Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 419

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 87/269 (32%), Gaps = 22/269 (8%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESR----KHTPS 131
                ++  + + ++   ++++          D    ++    I           +   +
Sbjct: 128 VKISKISPKTLMRYQITKNKVVAYMERKFKLSDMPLHELRLAFITEFEHHLLTVDRIQSN 187

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +A +++ +++ +   AV  +++  NP    +     +       +++++  +       +
Sbjct: 188 TAHKYIKNLKKIMNMAVGLDWIPSNPFNLFKC-SYVSTDREILNQDELEVLRLKPISVQR 246

Query: 192 P---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMK 243
               R  F F  Y+G   SD  +     +   +       T    T            ++
Sbjct: 247 LVEVRDVFVFCCYTGFAYSDVYQFQHDAVIVGLDKEYWLSTNRQKTGTRESVPLLPIPLQ 306

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADA 300
           ++      +     N      +  +++ + K  A   G+ K  + H  R   AT      
Sbjct: 307 IIEKYKNDEYCIKSNKLLPVNSNQRYNSYLKELADICGIKKHLTTHIARHTFATTVTLAN 366

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329
           G     + +  G K++   + Y K  ++ 
Sbjct: 367 GVPIETVSSMLGHKSIRTTQVYAKVVEKK 395


>gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 13/211 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SF 185
             TPS     +T++R  F     +E +        +   +  +     + E++ +     
Sbjct: 5   GVTPSVYTARITALRFFFSMTCGREEMKRYM----QFRTQPRKLPAVLSAEEVSELLAVA 60

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK 243
              G + R A      +GLR S+ C      + ++     +   K      V L    + 
Sbjct: 61  PGPGLKYRAALSISYGAGLRASEVCNLTAGDIDSDRVLIHVVQGKGRKDRKVMLSPDLLD 120

Query: 244 LLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           LL                      ++  Q +  F +    AG+NK  + H +R   AT  
Sbjct: 121 LLRDYWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHL 180

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +AG     +    G   +     YTK A +
Sbjct: 181 LEAGTDVRVIQVLLGHAKLTTTAQYTKVATK 211


>gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
             +V+++ ++     ++ R        ++    I+      +  R  + SS  Q L ++ 
Sbjct: 16  GFSVSTQRAYLYQLTEVARYF-HMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++    +   +++     +     ++ I      D  Q      +  +  +A      
Sbjct: 75  FLYRKVANKTMPSVSLPHPNK-----SQKIPDLLYPDEVQAMIRCCQHPKVYVAMVLAYT 129

Query: 202 SGLRCS--DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +G+R S  +  R     L ++   ++  K      V  P    ++L       E   +  
Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189

Query: 260 D----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                 + +++    +  K  A +AG+ K    H +R   A     AG     L A  G 
Sbjct: 190 YGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLPRLQALLGH 249

Query: 314 KTVDQAETY 322
           K +     Y
Sbjct: 250 KQIQTTFRY 258


>gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8]
 gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8]
          Length = 321

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 80/310 (25%), Gaps = 51/310 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  TL  ++ +          ++ +   +  +  + +        R++    + + +   
Sbjct: 3   KQPTLLEVVQQ---KIRVKHYSIRTETQYLQWVKRFVLFHDKKHPREMGGAEVEAFLSHL 59

Query: 127 KH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR------KTEGIRPWTK 176
                 + S+  Q L+++  L++  +      ++  +  ++P+R      K E  +    
Sbjct: 60  ATHGNVSSSTQNQALSALLFLYREVLGLSLPWMDDVVRAKKPQRLPVVLSKQEVAKILDH 119

Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLL-----------------------YSGLRCSDSCRA 212
                        G+  R+     L                        + L  S     
Sbjct: 120 MQATHGLIARLLYGTGIRIMECCRLRVQDIDFDRGELLIRNGKGAKDRVTMLPKSLIEPL 179

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---- 268
               +         +  G            K +         +   +    ++       
Sbjct: 180 KAHLVWRKALFHADEAKGKAEVYLPDALERKYVNAATSWAWQYVFCSGSYSVDPRSGRER 239

Query: 269 --------FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                        K     AG++K  + H  R   AT   ++G     +    G   V  
Sbjct: 240 RHHLDEKLVQRAVKKAVGLAGIDKLATPHTFRHSFATHLLESGYDIRTVQELLGHSDVST 299

Query: 319 AETYTKGADR 328
              YT   ++
Sbjct: 300 TMIYTHVLNK 309


>gi|237653457|ref|YP_002889771.1| integrase [Thauera sp. MZ1T]
 gi|237624704|gb|ACR01394.1| integrase family protein [Thauera sp. MZ1T]
          Length = 330

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 92/318 (28%), Gaps = 14/318 (4%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R  +      +                   +  ++     K  + N    + TTL  +
Sbjct: 5   RQRGNRWQCRVTRHGFPPET-KSFATKADAETWARSIEVEMDKGVHQNRASVERTTLADI 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  Y +                +       K        ++   +    + R    +  +
Sbjct: 64  LLRYAEEVTPCKKGAKDEAIRLNALR--ANKLAKHSLANLSAAAVAKFRDERLKTVSAGT 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187
            ++ L  +  +   A R+    +     ++ +P++     R  + ++  +  +       
Sbjct: 122 VLRDLALISSVLNHARREWGFPVENAVQAIRKPRQPQGRERVLSHDEEARLLAASAPIGR 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                +      L + +R  +      +H+  +  +     T       +P     +   
Sbjct: 182 RSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDTKNGTRRLVPLSPRAI--- 238

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             +      I+     ++     + FK    +AG++    H +R  + T  A+      E
Sbjct: 239 DTLKHMPRAIDGRVFPISEPALHLRFKLACDRAGIDGLHFHDLRHTATTRLAEKLTNLAE 298

Query: 307 LMATYGWKTVDQAETYTK 324
           L A  G K++   + Y  
Sbjct: 299 LSAVTGHKSLQMLKRYYH 316


>gi|297192331|ref|ZP_06909729.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719686|gb|EDY63594.1| traSA:integrase fusion protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 372

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 101/358 (28%), Gaps = 43/358 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +  +GK    +R   G+        +             ++        PR      K  
Sbjct: 6   KRPNGKWRARYRDLDGKEH--ARHFDRKIDAQRWIDEVTASLVTGQYVDPRSAKKPFKEY 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
             E+R          ++  +   +    +           I    ++S V S   T    
Sbjct: 64  AEEWRAIQPHR---PSTAKAVAQHLRCYVYPAWEKRSLGAIKPGDVQSWVTSLTTTHGLA 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S++     ++  +F+ AVR   +  NPC   + P    + I P   E ++         
Sbjct: 121 ASTSRTVFNTVNAVFRAAVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTL--SDEIP 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTI 232
           ++ +        +GLR  +     ++H+                  + ++    +   + 
Sbjct: 179 ARYKGLVLLGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSH 238

Query: 233 ITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            TV LP   +  +                F        +        ++    KAG+ K 
Sbjct: 239 RTVPLPRMAVDAMKAHLRDFPADGPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIPKG 298

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNS 336
              H +R   A++    G +   +    G          YT       +R R  +  +
Sbjct: 299 TGPHALRHHYASLLIRHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKA 356


>gi|328541944|ref|YP_004302053.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
 gi|326411694|gb|ADZ68757.1| Integrase family protein [Polymorphum gilvum SL003B-26A1]
          Length = 428

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 103/366 (28%), Gaps = 42/366 (11%)

Query: 14  ERTRHGKIIY--YFRK--GHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSP 64
             T+ G   +   +R   G  RRI +      T   A   A        +      I+  
Sbjct: 33  RVTKAGAKTFILQYRNAAGKSRRINIGRYGVMTLDNARAEAKIKLGAIAAGEDPADIDDD 92

Query: 65  RKKPTTLKWLISEYRKSAH--------WGSLAVNSRI-SFESYFDQIIRKSGDFDYRKIT 115
              P T+  L   Y   A            +  +S           I    G     K+ 
Sbjct: 93  PDGPMTVAALCDWYLSEAETGRLLGRRRRPIKASSLAMDKSRIEAHIKPLLGKRVVSKLK 152

Query: 116 TKHIRSGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPC 158
              I           +S                 A + ++++  +F+ AVR   +  NP 
Sbjct: 153 LGDIEGAQADIAAGKTSKPRKGSRGGVTTGGEGVAGRTMSTLHSIFEHAVRLGKIESNPA 212

Query: 159 LSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             V +        R    E               E      A  FLL +G R  +     
Sbjct: 213 KGVRKIASTPRDRRLSRTEIEKLGKAMLAAEAEGEHPTGLAAIRFLLLTGFRRMEGLGLE 272

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
              L     +I+   T +     +     + LL   P  +  FF   D    +       
Sbjct: 273 RAWLDEEEGAIRFPDTKSGAQTRVIGGSAVDLLLAQPRTRSPFFFPADWGDGHFIGVVRV 332

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           F     + G+ + + H +R   A+++AD G +   + A  G       + Y    + ++L
Sbjct: 333 FDRVCARVGLADVTLHALRHTFASVAADLGFSELTIAALLGHAARGVTQRYIHIDEALKL 392

Query: 332 GIKNSR 337
                 
Sbjct: 393 AADKVA 398


>gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
 gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1]
          Length = 368

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/335 (9%), Positives = 82/335 (24%), Gaps = 68/335 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPS- 131
           +  Y         + N+  ++                D+R++T + +   VE  +  P+ 
Sbjct: 29  VEAYLAFLSAIERSPNTVKAYAHDLKDFFAFLAQRGLDWRRVTLEDVGGFVEWLRMPPAG 88

Query: 132 ------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                             +  + L+++   ++   R      +  +    P  ++     
Sbjct: 89  RAGQVAVLPVTAPQVGAGTINRKLSAVSSFYQHQARHGVELGDLLVKWAAPGARSSWKPF 148

Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208
                  + +                                + R  F  L  +G+R  +
Sbjct: 149 LHHISKGRPQRRRAIALEAPVKLPRVLTVGEVQSILDACTRLRDRFLFAVLFDTGMRIGE 208

Query: 209 SCRAGVQHLQNNIFSIKT--------------QKTGTIITVELPDGFMKLLAMTP----- 249
                   L      ++               +     ++ EL   +   L +       
Sbjct: 209 VLGLRHDDLSAAEREVRVVARLNENGARAKTGRPRTVPVSAELLRLYADYLHLEYGDLDS 268

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                  +       ++             + GV+   H  R  +AT           + 
Sbjct: 269 DYVFVNLWGGRVGHALSYRSVYDLVGRLRRRTGVDFDPHWFRHSAATRMLRDSVPLEVVS 328

Query: 309 ATYGWKTVDQAE-TYTK-GADRIRLGIKNSRRISS 341
           +  G  +V      Y    A+  R+ ++ +   + 
Sbjct: 329 SLLGHASVTTTMDVYGHLTAEDARMVLEKAGWFAG 363


>gi|78355667|ref|YP_387116.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218072|gb|ABB37421.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 281

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 80/280 (28%), Gaps = 13/280 (4%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
            T+      Y   A   +    +       F +            ITT  +    +    
Sbjct: 1   MTVGKWAEYYVDHAE-QTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAV 59

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               H+ ++  +   ++   + W ++   +      ++     +   +R     +  +  
Sbjct: 60  LKEHHSGNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAV 119

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELP 238
              + G   RL      Y+  R  +  R     +      I             + +   
Sbjct: 120 VDVAAGE-QRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPM 178

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
              ++ L              D+   +    + W K    +AGV     HG+R  +A+  
Sbjct: 179 AKPLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYG 238

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            ++GA+  ++      K+ +    Y +   +    ++   
Sbjct: 239 IESGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALE 278


>gi|260663670|ref|ZP_05864559.1| integrase [Lactobacillus fermentum 28-3-CHN]
 gi|260551896|gb|EEX25011.1| integrase [Lactobacillus fermentum 28-3-CHN]
          Length = 362

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 108/361 (29%), Gaps = 34/361 (9%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             +  K  Y    +R  +G+R +           A  +A      +     +      + 
Sbjct: 4   VKKRPKGYYGVAEYRDSNGKRHQKGAGTFKLKREALAAA--DKLERELNGLNTELANLSF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 + +     S+   +++ + +    I    G     +I     +  +    H   
Sbjct: 62  AEYYQRWYRLYKEHSVEPITQVRYRTVGKLIADFFGQKKIAEIHRSDYQEFINWYGHDKV 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------ 183
             + I+  +++R+    A+  + +  +   +V+    K +  +     + +  +      
Sbjct: 122 KDTVIKVNSAVRLCVNSAIDDDLIIKDFTHNVQITHDKQQRPKIEYLNEKEIRQLESATA 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
           +     +  R      + +G+R S+      + +     +I   K+              
Sbjct: 182 NKLDHNNTSRYMILTAILTGMRKSEIQALTWKDIDFLHATISITKSWDEQKKTFKPTKTE 241

Query: 233 ---ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285
               T+++    +  L      G    F+N       +T      +   T  G++K    
Sbjct: 242 SSIRTIKVNRQLLDWLEDLKVNGSTLIFMNKLGTIPTSTALIKVLRTIMTDCGISKQGFH 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNS--RRISSV 342
            H +R          G   + +    G   +    +TY+   D  +        ++++ +
Sbjct: 302 FHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDELITQKLAQL 361

Query: 343 V 343
           +
Sbjct: 362 L 362


>gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 309

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 17/305 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A               +   T+    + Y +       +  +  S   Y   I    G
Sbjct: 4   QLASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSL--YLKHIEPVIG 61

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165
                ++ T  I   +      +P + +  +  ++ L++       Y    P   V   +
Sbjct: 62  SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGVVVKR 121

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                +R  + ++ +         S          L++GLR  +     VQH+  +   I
Sbjct: 122 VDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVI 181

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282
                        + +   ++LA   +G+        K         +  F        +
Sbjct: 182 AVMDAKSGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVRDLEL 241

Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
                        H +R   A+     G   + +    G   V+    Y K A D  R  
Sbjct: 242 NDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREA 301

Query: 333 IKNSR 337
           +    
Sbjct: 302 VNQLD 306


>gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 340

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 85/313 (27%), Gaps = 30/313 (9%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +        +      ++   +LK LI  +  SAH  +L 
Sbjct: 21  KGKRIR------RKFATKGEALAFEQHKIQHPWQEEKEDRRSLKELIDSWY-SAHGITLK 73

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136
                  +          G+   R    +      E R            + +P +    
Sbjct: 74  DG--EKRKLAMHHAFDCMGEPLARDFDAQMFSRYREKRLKGDYARSNRVKEVSPRTLNLE 131

Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           L   R +F    R  E+   NP  ++   + +   +   TKE +            P L 
Sbjct: 132 LAYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLTKEQIAALLDECKRHEHPDLV 191

Query: 196 FE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 L +G R S++       L     +    K     TV +     + L        
Sbjct: 192 SVVKICLATGARWSEAEGLKKSQLSKYKITYNYTKGKKNRTVPISKELYEELPAKNKEHG 251

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           + F N          F    +    +    +  H +R   A+     G     L    G 
Sbjct: 252 SLFQNC------YGAFRSALQRTNIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGH 305

Query: 314 KTVDQAETYTKGA 326
             +     Y   A
Sbjct: 306 TDIKMTMRYAHFA 318


>gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 416

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 114/390 (29%), Gaps = 72/390 (18%)

Query: 10  FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMS-----------ALTGS 54
           + T    + G+  +    Y +K   R+  L    +S                    L   
Sbjct: 13  YTTSYTRKKGRFYHVVFEYVKKKGTRKKSLSRTTKSEDEEVANRMLDDFVIECMKILNID 72

Query: 55  TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
              +    +               +    I  Y K+    ++  ++   +ES     +I 
Sbjct: 73  KKYKPKNRNKIIFNKDLNLYNTEISFCDFICGYIKTRR-KTIEDDTYSGYESIARCSLIP 131

Query: 105 KS--GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                +   ++I    I          R  +P++ + +   + ++FK+A+R + +  NP 
Sbjct: 132 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIITRNPL 191

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            SVE+PK+K      +  E++         E            Y GLR S+        +
Sbjct: 192 DSVEKPKKKKYVAEVYNAEEINILLDLLKREEENLYFGVLMAAYFGLRRSEVIGLKWSSI 251

Query: 218 QNNIFSIKTQKTGTI---------------------ITVELPDGFMKLL----------- 245
                +I    T                         +  LP    +LL           
Sbjct: 252 NFEENTITIMSTVKETNIDGKHIFVCQDKTKSPAGLRSFSLPIEIKELLLEIKEKQEENK 311

Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
                      KE  ++++  +++     +  F     K  +     H +R   ATI  D
Sbjct: 312 KYLGKGYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILYD 371

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADR 328
             A   E+    G  +V      Y    +R
Sbjct: 372 NNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 401


>gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 361

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 102/345 (29%), Gaps = 46/345 (13%)

Query: 15  RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     YYF  G   G+  +       T   A  +                    +++
Sbjct: 6   RKRGNFWSYYFNIGKIDGKYKKKEKGGFKTKKEAENALRDAIKEYELCGEVFEPSTISIE 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
              + +  +    +  +N++  +     + II    D+  +++    ++  +  +K    
Sbjct: 66  DYFNYWFDNYVLVNCKLNTQTYYRRILDNHIIPYFKDYKLKQLKADALQKFLNYKKRNGL 125

Query: 129 TPSSAIQFLTSMRVLFKW------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + SS   F   +    K+       +++  +        +  +++ + ++  T E+  + 
Sbjct: 126 SKSSITNFYGVLSGALKYAVYPCNYIKENPMYYVNIPKYDEAQKEAKDLKIITIEEFTRI 185

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
            + +  G    +  +    +G+R  +       ++      I  + T             
Sbjct: 186 INRFPMGENLYIPLQIGFNTGMRGGEIVALTWDNVDLENGIIHVKHTLIETGTKGMKKFI 245

Query: 233 -------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                              I +       +L+     G+     N    K N    +   
Sbjct: 246 LGTPKTKSSYRSIHIGDTLINILKHHKEWQLMNKEKYGEWYEHSNFVCTKENGKPLTTSI 305

Query: 274 KAKATK-----AGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
               ++       +N + H +R   AT+  + GA   ++    G 
Sbjct: 306 YKYLSRVVNNELCINFTMHSLRHTHATLLLENGANMKDMQKRLGH 350


>gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 333

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 51/309 (16%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRK--- 127
           L+ EY    H    L+ ++  ++      +   + +      K++  H+R          
Sbjct: 11  LMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKVSNGHVRRWAGRLHSKG 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC------------LSVERPKRKTEGIRPWT 175
            +P S  + L++ R  + W   ++                     V+ PKR     +  +
Sbjct: 71  KSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKRPKSLPKALS 130

Query: 176 KED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            E           +  +    E  +       L  SGLR S+     V   ++       
Sbjct: 131 VEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQSKDRQHESAG 190

Query: 227 QKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMN 265
                              +V +    MK LA     ++      +           +++
Sbjct: 191 WLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALFLSATGKRLS 250

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +  A +AG+      H +R   A+    +      +    G  ++   + YT
Sbjct: 251 PRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYT 310

Query: 324 KGADRIRLG 332
              D   L 
Sbjct: 311 -SLDSQHLA 318


>gi|119477783|ref|ZP_01617906.1| Phage integrase [marine gamma proteobacterium HTCC2143]
 gi|119448944|gb|EAW30185.1| Phage integrase [marine gamma proteobacterium HTCC2143]
          Length = 346

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 96/339 (28%), Gaps = 18/339 (5%)

Query: 17  RHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G   ++       GRR+            A    +       +          T +  
Sbjct: 10  REGTPYWWVDLVLPDGRRV-CQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDKTWRQA 68

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
           +  Y            S  +      ++    GD   R+++   +   +  R+    T +
Sbjct: 69  VVRYLAENATKK----SLQADRDNLKKLDAFVGDLLLRQVSMDSLWPFIHQRRDDGVTDA 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L  +R +F  A  +           +    K    R       +  +        
Sbjct: 125 TINRALEVVRRIFHLARDEWCWLERF---PKIRMLKEPKRRIRFLRRPEVNRLLEELPDH 181

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
            R   +F + +G R  +  +     +  +     +    T       +P     +LA+  
Sbjct: 182 MRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHGTTKNGDGRGIPLNNDAVLALRS 241

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +  +        +          +K    +A +     H +R   A+    +G +  ELM
Sbjct: 242 LHGQHQRWCFTFRGKPIKAIGSCWKRALERAQIENFRFHDLRHTWASWHVMSGTSLQELM 301

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              GWK+ +    Y   A         + RI  V D  D
Sbjct: 302 ELGGWKSYEMVLRYAHLAPEH--LSSAAARIEQVWDVVD 338


>gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 415

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 106/377 (28%), Gaps = 54/377 (14%)

Query: 4   SLRLPPFVTKERTRHG-----KIIYYFRKGHGR----RIRLPYPHESTFIPA---YMSAL 51
               P    +E  R G     K+ Y   K  G+    ++   +  + T   A       +
Sbjct: 5   KTNYPGVFYREADRIGGKGAEKVYYILFKQDGKVLEEKVGRQFVDDMTPARAAGIRAERI 64

Query: 52  TGSTPKREYINSPR-KKPTTLKWL-ISEYRKSAHWGSLAVNS------RISFESYFDQII 103
            G  P R+ I   R  +   +K    + +  +  W      +            +   I 
Sbjct: 65  EGKRPSRKEIKEEREAQEHAVKEAEANRWTITRLWEEYKRGTPGLKGIVTDENRFEKHIK 124

Query: 104 RKSGDFDYRKITTKHIRSGVESR--------------------------KHTPSSAIQFL 137
              GD    ++    +                                    P +    L
Sbjct: 125 PIFGDKQPHELGALDVDRLRIGLLKKARKPAVQKTPGDSKPGTVKKSVDPLKPGTVKNVL 184

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195
             +R +  + V++  +      ++E PK         T +++ +      +      A  
Sbjct: 185 ELLRRIINFGVKKN-LCTGAGFAIELPKVNNLRTEDLTPDELAKLMDAIEKDENLIAANL 243

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKET 254
            +  L++G+R  +  R     L      I  +     +   +P +   + +  +     +
Sbjct: 244 MKMALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIPVNEEARKILQSHRRTNS 303

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAG-ATAHELMAT 310
            F+   +                  AG+ K     HG+R   A++ A +G    + L   
Sbjct: 304 GFVFPGRGGHQRIDIHKSVNKIKEAAGLPKGFRALHGLRHAYASMLASSGKVDLYTLQRL 363

Query: 311 YGWKTVDQAETYTKGAD 327
              K+    + Y    D
Sbjct: 364 LTHKSPTMTQRYAHLRD 380


>gi|71276068|ref|ZP_00652349.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71902095|ref|ZP_00684131.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71163151|gb|EAO12872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71728140|gb|EAO30335.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
          Length = 339

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 308

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 90/304 (29%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124
              +++ +   +R+      +  ++  ++     + ++   G+ D   +   +       
Sbjct: 2   TKKSIREIAMAWREDKRPY-VKQSTFAAYMLILENHLLPYFGESDALSEKAVQDFVLQKL 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   +  S    L  ++++ K+ V+ E++  +          K + +   T    ++   
Sbjct: 61  NGGMSVKSVKDILIVLKMVMKFGVKHEWMNYSEWDIKYPTTEKNKELEVLTVAHHKKILD 120

Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +  +    R L     L +GLR  + C      +  +  +I  Q+T   I +   +    
Sbjct: 121 YIRQNFTFRNLGIYISLSTGLRIGEVCALRWSDIDVDSGTISVQRTIERIYIIEGEMKHT 180

Query: 244 LLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKA 277
            L +     +                                         +  ++K   
Sbjct: 181 ELVINTPKTKNSCREIPMSKELLALVKPLKKVVNADYYILTNEPLPTEPRTYRNYYKRLM 240

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
              G+ K   HG+R   AT   ++      +    G   +      Y     ++ +  I 
Sbjct: 241 EHLGIPKLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCIA 300

Query: 335 NSRR 338
              +
Sbjct: 301 KMFK 304


>gi|322690727|ref|YP_004220297.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455583|dbj|BAJ66205.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 379

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 95/368 (25%), Gaps = 62/368 (16%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
              T   A                 P +    LK  +  +        L  ++  ++ S 
Sbjct: 3   RGRTKAIALKRLKDKKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRST 62

Query: 99  FDQ-IIRKSGDFDYRKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFK 145
            +  I    G     ++  KH R   E             +  + ++A     ++     
Sbjct: 63  VEALIKPAIGGVRLGRLEPKHFRLMEEYITKGDDTCDPPRKPRSSATAGSAWRTLHKALD 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV++  +  NP    E P+      +  T     Q  +  +      L +     +G+R
Sbjct: 123 DAVKEGIIESNPSDRAEAPRVVYTERKILTPVQAGQLINAEN-DVMWHLMWRLAYETGMR 181

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGT---------------------------------- 231
             +        +Q    ++                                         
Sbjct: 182 QGERLGLTNSEIQLIDNAVCIVVEWQLKVYNNVKGVRDIPSSLGARHVTGKAYLVPPKTN 241

Query: 232 --IITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                + LP+     L             +  F+  D   +N    +  +K    + G+ 
Sbjct: 242 AGRRVIPLPESLAVELGRYIKGTGRTNSDDLVFVQADGTPLNRMIETRAWKKALNRVGLP 301

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKNSRR 338
                H  R  +AT  A  G +     +  G   +      YT    AD  +  I     
Sbjct: 302 DDYVPHSARHTAATAMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AINGVET 360

Query: 339 ISSVVDSD 346
           + ++  ++
Sbjct: 361 LLALEPAN 368


>gi|288906333|ref|YP_003431555.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979346|ref|YP_004289062.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733059|emb|CBI14640.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179274|emb|CBZ49318.1| phage integrase family integrase/recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 388

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 117/389 (30%), Gaps = 57/389 (14%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYI 61
            + +   + G  +Y            G++ R       +         A+T       Y 
Sbjct: 2   NIKEVIKKDGTKVYRSNVYLGVDSITGKKARTSVTARTKKELKQKAKQAITAFIN-NGYT 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +    T K L   +  S    ++ +N+R + E      ++   GD+   K+TT  I+
Sbjct: 61  TKTKTNIRTYKELAYLWWDSCK-NTVKINTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQ 119

Query: 121 SGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--- 169
             V    +        +     Q     + + ++AV  + +  NP   V  P++K     
Sbjct: 120 QQVNKWANDYNKGKKGSYKHYNQLHALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEV 179

Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            I+   K++++QF  +               + ++ LL +G R  +        +  +  
Sbjct: 180 KIKFLDKQELKQFYDYLDTLDKSKYYNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNG 239

Query: 223 SI-----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264
            I                      ++      +L +              ++        
Sbjct: 240 YISINKTLNRDDEVNCPKSKAGYRDISIDKATILMLKHYKNRQTIQAWQHKRTETVVFST 299

Query: 265 ------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                 +        +     AGV+  S HG+R   ATI  +AG    +L    G   + 
Sbjct: 300 FVNKYASQPALRRRLERHLKNAGVSYVSFHGLRHTHATIMLNAGIQPKDLQYRLGHSDIS 359

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345
               TY            ++    S ++S
Sbjct: 360 MTLNTYVHAT--KEGAKNSASFFESAINS 386


>gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae]
 gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS]
 gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS]
          Length = 424

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 108/345 (31%), Gaps = 44/345 (12%)

Query: 19  GKI-IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK+  +  R        R           AY++ LT    + EY++ PRK   T   +  
Sbjct: 55  GKVSRWRVRWVDASGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGSVAE 113

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR------KHT 129
           ++  +         +   + S  D + + K      ++I  +   + + +       + T
Sbjct: 114 QWFATKQHR--KPKTVAGYRSLLDTVVLPKWESVQLKRINYESYSTWLGALSVDGGQRGT 171

Query: 130 PSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182
             SA +       +  + K+A R   VA N    ++R    P++     R  T  ++   
Sbjct: 172 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVAFEIKRDEDLPEQGERERRYLTHAEL--- 228

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------- 225
                   +       L Y GLR  ++     +H+ + + +++                 
Sbjct: 229 LMLAKAADRFETLTLVLGYCGLRFGEAVALRRRHVGDRMLTVRSSATAVTGKGIVESTTK 288

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
             +     +   +       L   P              +    +   F       G++ 
Sbjct: 289 TKRDRHVPVPEPVWKKLKAELPADPNALVFPSRKGGFLPLGE--YRWAFDNACADIGIDG 346

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              HG+R  +A+++  AGA    +    G  T     + Y    +
Sbjct: 347 LVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLN 391


>gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8]
 gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8]
          Length = 313

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 20/275 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              +      +        R          + + +R+ +   +  P     FL ++R  +
Sbjct: 42  RGYSPRGVRRYLQDLAFWFRFLEAEGLSP-SPEAVRALLLRERWAPRRVQGFLAALRSYY 100

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200
           ++    +   A +P   + RPK           E++++F   + E  +  L      FL 
Sbjct: 101 RYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLEAFREEKEAALLEALARFLY 160

Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250
            +GLR S++     +++     + +      K      V L     ++L           
Sbjct: 161 GTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNKERLVPLSKTAREVLEALGRPQGNVN 220

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                         +A      F+  A +AG++    + H +R   AT+  + G     +
Sbjct: 221 IFTFSQGRRKGHVPSARWVEAKFREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAV 280

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G +++   + Y   A R RL  + + R+  +
Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 313


>gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 400

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  TKE+ ++F +F S      +
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHINV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216
              F + +G R  +      +                                       
Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +       +  +   I   E       +       +   F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K  V             K     + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTKGA 326
               + YT  +
Sbjct: 375 AMTTDLYTHVS 385


>gi|227512453|ref|ZP_03942502.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577]
 gi|227084426|gb|EEI19738.1| bacteriophage integrase [Lactobacillus buchneri ATCC 11577]
          Length = 374

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/373 (12%), Positives = 109/373 (29%), Gaps = 47/373 (12%)

Query: 14  ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +  +G  I        G  RRI             + + +     K   +       T 
Sbjct: 5   YKRANGNWIARVSYKENGEYRRINQGGFRTRKLAQTWATEIESRRNKGNVLTYSE---TF 61

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           L    +E+ ++      LA N+   +      +   S +   ++IT    +        +
Sbjct: 62  LPDFFNEWYQTFKSPKGLADNTVQIYAFTKHVLANSSLNMPLKEITFTDYQQFFNQLGKR 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQ 180
           ++ SS  Q  T +R   + A++   +  N    VE           K   +    K    
Sbjct: 122 YSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEVDDIKKLTDY 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKT 226
              +        ++A  F L +G R ++        +                +    KT
Sbjct: 182 CVANIKEITDVSKMAILFSLLTGARFAEVAGMTWDCVNFKEKTITINKTIGMQSRTFEKT 241

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF-------------INNDKQKMNATQFSIWF 273
           + + ++ T+ +    + +L    +  +                     + +  +  +   
Sbjct: 242 KNSSSVRTLSINFTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPFHRPLYNSMVNNDL 301

Query: 274 KAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--GADRI 329
           K    K      S HG+R   A+     G +   +    G K++   +  Y     A   
Sbjct: 302 KKICRKNLSQEISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGTTQNVYIHFLKAAET 361

Query: 330 RLGIKNSRRISSV 342
           +   +  + ++ +
Sbjct: 362 KENEQAQKMLNEL 374


>gi|212499734|ref|YP_002308542.1| integrase [Bacteriophage APSE-2]
 gi|238898725|ref|YP_002924406.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|211731703|gb|ACJ10191.1| integrase [Bacteriophage APSE-2]
 gi|229466484|gb|ACQ68258.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 381

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 111/378 (29%), Gaps = 59/378 (15%)

Query: 17  RHGKIIY-YFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GKI Y  +    G+RI+      +                +   ++       T    
Sbjct: 5   KRGKIWYGSYTTPCGKRIKESLGTEDKKQAQELHDKRKAELWRIAKLDDF--PNVTFDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---------RSGVES 125
              + +          S    +      +        + +T   I         R     
Sbjct: 63  CLRWIEEKANKK----SLDDDKGRLGFWLLYFSGTRLKDMTEAKIYSAISKMKNRQQQLR 118

Query: 126 RKHTPSSAIQ--------------------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            K   +SA +                     L  ++ + + +  +++  I     ++ P 
Sbjct: 119 WKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLALLKSMMR-SAERDWKWIEKSPVIKVPS 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            + + IR    ++ ++  +   E    R   EF L +GLR S+        +        
Sbjct: 178 AREKRIRWLEPDEAERLINECPE--PLRSTVEFALATGLRRSNIINLAWSQIDMQRKVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------- 271
              +  K+G  I V L D    +L       + +   +      +               
Sbjct: 236 IEPENSKSGKAIGVALNDTACCILTRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDS 295

Query: 272 --WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++A   +AG+     H +R   A+    +G     L    GW++++    Y   +  
Sbjct: 296 NTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLSPS 355

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++++I   + +D
Sbjct: 356 H--LTEHAKKIDEALAND 371


>gi|217963765|ref|YP_002349443.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23]
 gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99]
          Length = 314

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 93/267 (34%), Gaps = 18/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRK-- 127
           +  E+ +S    ++   +   +    + + R             ++ + +   +   K  
Sbjct: 26  VFQEFIRSRRIRNVRETTIQYYTDAINVLKRDREYIHVQKPIMHLSQRDLEDMIMYWKGF 85

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQQF 182
              ++    + + +  + +  +Q ++ INPC ++   + + E       ++         
Sbjct: 86  MRANTINSKIKAFKAYYNFLYQQGFIKINPCENLSLLRVREEIRETLNPDEIKKIANHFK 145

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           K       +  + F+ LL +G+R S++    +Q + ++   +   K      V +     
Sbjct: 146 KKETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSDYIIVVESKNLKQRIVYISKRMR 205

Query: 243 KLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
           + L         +     FIN D+   N   F    +      G+ K  S H  R+  A 
Sbjct: 206 EKLTSYLKIRGNLSHTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPHVCRRTYAK 265

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
            +  +G  A  L    G  +++  + Y
Sbjct: 266 NAILSGMDAFSLATLLGHSSLEVTKRY 292


>gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+]
          Length = 327

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 96/300 (32%), Gaps = 16/300 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     +     A+   +  +  ++E+++ P     +L  L + +     +   
Sbjct: 20  RNGKRIR-RTFSKKHEAVAFEKYVVVNYHEKEWLSKPTD-KRSLSELSTLWW---SYHGQ 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
            ++    ++    ++IR   D    +I    I      R       SS  + L  +  +F
Sbjct: 75  NMDYGQKYKVQLAKVIRIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSGMF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +          L+     +  +  R +  +   +      +G   R+A    L +G 
Sbjct: 135 TALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKELLNCLDGDNRRVAILC-LSTGA 193

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  ++ +   +H+ +N  +    K G   TV +       L     G             
Sbjct: 194 RWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISRDVFNDLTAMKSGLLFNDAAYLI--- 250

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               F    K+  T     ++ H +R   AT     G     L    G  T+ Q   Y  
Sbjct: 251 ----FRQKLKSVKTDLPQGQATHVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAH 306


>gi|296160164|ref|ZP_06842983.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295889638|gb|EFG69437.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 345

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 87/327 (26%), Gaps = 23/327 (7%)

Query: 15  RTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R G  +++   R   G R+R      +    A                   +     +
Sbjct: 4   RKRKGSDVWHIDIRTPGGGRLR-QTTGTADKKEAQELHDKLKHEAWRVAKMGERPRYVFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------GVE 124
              + Y                  ++    +      D   IT   I +           
Sbjct: 63  QAAARYLTEQSNK----ADYDDRAAHIRHFLTHFAGRDLGSITRPEIMAAIPTESPKKHR 118

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                P++  ++L ++R L   A +            E P+        W   D  +   
Sbjct: 119 KTPLKPATRNRYLATIRALLLDAAKDWEWIDRAPSLPEFPE--PTIRVRWITRDEAKRLL 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
              + +  R    F   +GLR  +        +    +         K    I V L D 
Sbjct: 177 RALDETCMRDITAFCFATGLRQRNILELEWSQVDLVSRRAWIHPDQAKARKPIGVPLNDE 236

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
            + LL       ETF    D + +        +++    A + N   H VR   A+    
Sbjct: 237 AIALLRKQIGQHETFVFVRDGKPLKKWD-DWKWRSACRLANISNFRFHDVRHTWASWHVQ 295

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     L    GW T +    Y   A
Sbjct: 296 NGTPLQVLKELGGWATFEMVLRYAHLA 322


>gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 329

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 104/331 (31%), Gaps = 35/331 (10%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
             LPP V +   +HG   YY + G   R+    P                T      ++P
Sbjct: 9   KHLPPCVYE---KHG-AYYYVKAGKWTRLAADLP-------------AALTEYARRFDNP 51

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R        L+ +         L+ N+   ++    +I     +F   +I  KH+ +   
Sbjct: 52  RGGMP---ELVEKVLTHISPK-LSKNTIHQYKIAAARIKDSFAEFAPDQIRPKHVAALKM 107

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               TP+ A + L+ ++ +F  AV  + V  NPC+ + R              D +    
Sbjct: 108 DMADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGIRRHAEGKRQRY---ITDDEYAAI 164

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +     + ++  + L  +G R  D        +     +   QKTG  + V         
Sbjct: 165 YAKANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQQKTGAKLLVRWTPELRDA 224

Query: 245 LAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
           ++                  ++ K   +       +K     AGV     H +R  S T 
Sbjct: 225 ISRANALNGNVLGPTLFRTRSHGKTAPSYGATRDQWKDAVDAAGVPDAHIHDLRAKSLTD 284

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +   G          G  +    + Y +  +
Sbjct: 285 AKRQGKD---AQMLAGHTSPTMTDRYIRLRE 312


>gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2]
 gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2]
 gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
 gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 341

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 91/339 (26%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y     G+R+R           A+ +       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-- 126
             +I ++       SL   +    +    +   I    GD    ++T        E+R  
Sbjct: 62  SEVIDQW------HSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                          P +      ++  +F    +  + +    L+     +  EG   +
Sbjct: 116 GEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAF 175

Query: 175 TKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              +  +        SQ     +  +  L +G R S++       L     +    K   
Sbjct: 176 LAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +       L        T                  F+    +AG+        H
Sbjct: 236 NRTVPISQDLYDELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4]
 gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4]
          Length = 311

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 100/289 (34%), Gaps = 21/289 (7%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
            P    F   ++                    +T+  LI EYR++A + +L+ ++R  +E
Sbjct: 4   KPGTKAFTQEFLRLTRDRQKP--------AIASTIGSLIDEYRQTARYKALSPSTRRDYE 55

Query: 97  SYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             F  I  + GD     +    + +   S  +  K +P SA   +  +  LF WA   EY
Sbjct: 56  RIFGAIRLEYGDCPLAAVEARGSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEY 115

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  NP   VER    +     W+   + +           R   +  L++  R +D    
Sbjct: 116 IMRNPLERVERLHEGSRKDIIWSSNQIDKLL--AEASPHIRDVAKVALWTMQRQADILTM 173

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSI 271
                     SIK  KTG  + V      M +L      +     +N+  Q   ++ F  
Sbjct: 174 PTLAFDGERLSIKQGKTGARVRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRA 233

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISAD-----AGATAHELMATYGWK 314
            ++ +  + G+   + H +R  + T +              +    G  
Sbjct: 234 SWRKEMARLGIKGVTFHDLRGTAITFAYAHLDRPHDEKIKLISEISGHS 282


>gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
 gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp.
           TJI-51]
          Length = 360

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 93/330 (28%), Gaps = 32/330 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-----SPRKKPTTLKWLISEYRKS 81
           +    R       E+    A   A   + PK          SP K   TL+       + 
Sbjct: 17  RNDRYRQTFATEEEAKADEARELARRAALPKAVRGEGTGTISPLKSRKTLQEAYDLTFRL 76

Query: 82  AHWGSLAVNSRISFESYFD--QIIRKSG-DFDYRKITTKHIRSG---VESRKHTPSSAIQ 135
              G  +  +        +   +++  G D     ITT+ I       E   ++ S+  +
Sbjct: 77  EWKGGKSEKTM-----TLNGGNVLKALGADTLLSDITTETITEMVLEFEDLGNSGSTVNR 131

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L+ + ++ K AV   ++   P +   +  +         +E            +     
Sbjct: 132 KLSLLSMVLKTAVNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKACQHLGLNCLHDF 191

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE 253
               + +G R ++         Q  +  +     K G    +       ++L    +   
Sbjct: 192 IIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIPATSRVARILHRRRMNLT 251

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309
           TF           +     +       G+ +      H +R   A+     G     +  
Sbjct: 252 TFEGL------TVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQH 305

Query: 310 TYGWKTVDQAETYTKGAD----RIRLGIKN 335
             G K ++    Y   A     + R  ++ 
Sbjct: 306 WMGHKNINTTLRYAHLAPENLMQARNALEA 335


>gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259]
 gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259]
          Length = 341

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 41/307 (13%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI- 119
               ++ +  S       L+ N+  ++ + F   I                  +T  ++ 
Sbjct: 5   FAKHLTRFFTSYLSGECGLSHNTIRAYGNTFLSFIDFMEKTRRVKADRLSLEHLTRDNVS 64

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              R   E++    S+  Q L +     K+ +  +   +    S+   K K    +  + 
Sbjct: 65  DFLRWTEENKGCGISTRNQRLAAFHTFSKYMLYGDIFHLEQWQSILSIKSKRSEKQSVSY 124

Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
             +   K            G +       L  SG R  +        L            
Sbjct: 125 LSVDGIKLLLSLIPVNTRNGLRDLALIALLYDSGARVQELIDLTPMDLHLVKPYYVSLFG 184

Query: 228 KTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKAT 278
           K      V L +  ++LL               +   F NN  +K+     +        
Sbjct: 185 KGRKRRLVPLQEQQVELLKKYMEAEGLLKQSLNQHPLFANNRGEKLTNAGVTFILMRYVR 244

Query: 279 KAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRI 329
            A V          S H +R   A     AG     +    G  ++   E Y +  + + 
Sbjct: 245 NAHVADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQK 304

Query: 330 RLGIKNS 336
           R  ++ +
Sbjct: 305 REALEAA 311


>gi|237811823|ref|YP_002896274.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
 gi|284159933|ref|YP_001058564.2| phage integrase family site specific recombinase [Burkholderia
           pseudomallei 668]
 gi|237502971|gb|ACQ95289.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei MSHR346]
 gi|283775097|gb|ABN83658.2| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 668]
          Length = 339

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 110/350 (31%), Gaps = 43/350 (12%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R    +   RK         +  +   + A+   +     +  + +    + TTL  L+
Sbjct: 6   KRENGWMCQVRKKGYPATSKKFATKIEAL-AWGRMIESEMDRGLFASRNDAERTTLADLL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
             Y        ++  ++ S  S   +   + ++ G +    +T  H+    ++R  + +P
Sbjct: 65  DRY-----TRDISP-TKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSP 118

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            + +  L  +  +   A R+  + +   +      RK +G       D  Q     +E  
Sbjct: 119 QTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIIDATESL 178

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             R      + +G+R  +      + +        +   KT +  TV L    + +L   
Sbjct: 179 DLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHAR 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------------------VNKSAHGV 289
            + +     N       +   +  F     +A                    +    H +
Sbjct: 239 RVAQCVAPFNV-----TSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R  + +   + G    E+ +  G KT+   + YT            ++++
Sbjct: 294 RHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL-----RAEDLAKKL 338


>gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 390

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 80/238 (33%), Gaps = 17/238 (7%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIR 172
                   E R  + ++A ++L         AVRQ  +  NP       ER + K     
Sbjct: 157 PNSHIKYGEPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPKDGKKE 216

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT 226
             T E+++   +  S   + + AF F  ++GLR SD  R    H+            ++ 
Sbjct: 217 YLTIEELRTLMATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEYIDMEM 276

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           QKT   + + L +   + L         FF          T      +  A  AG+ K  
Sbjct: 277 QKTEKPVIIPLSEEAKRWLPKPRGNDIPFFDI----PTTQTVIGRALRKWAEAAGIEKHI 332

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           S H  R    T+    GA         G   +   E Y K  D+ +   +    I  +
Sbjct: 333 SFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK--EEAINLIDGM 388


>gi|225870178|ref|YP_002746125.1| integrase [Streptococcus equi subsp. equi 4047]
 gi|225699582|emb|CAW93207.1| putative integrase [Streptococcus equi subsp. equi 4047]
          Length = 388

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 105/373 (28%), Gaps = 51/373 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T+ GK  YY R+G    G++      +  T   A  +ALT    K E 
Sbjct: 5   KTKYP-NIFTYDTKKGK-RYYVRRGYYLKGKKKEATKSNLKTLQEA-RAALTEIEQKIEN 61

Query: 61  INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
            +    K  T+    + Y  +    GS   ++  + E+ +     +  G    + I+   
Sbjct: 62  NDFAYNKNLTVDQYWNMYVDNRLKTGSWKPDTEANKEAIYKTHFKKYLGKTKMKDISRIE 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRP 173
             + +   +  ++ ++     + +  +   AV  + +  NP   +   +           
Sbjct: 122 YENHINGMRKNYSKNTLRLIHSVLNAMLNHAVTNKMLDDNPIDGITIGDSEIIPVNKRIS 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS------------------------------- 202
             +       +  S             +                                
Sbjct: 182 LEEFKEWDSWAKKSLIQYDYTIVRMTYFGARSSEVVAIKIGNLTKLENGRYRILLDESRT 241

Query: 203 -------GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
                  G++   S R     L+ + +          I  +      K   +     +  
Sbjct: 242 YHRPNGGGMKTPGSERFMEVDLETSHYIDDVVVESKRIAKKYNRILSKEDYLFLTNFKNA 301

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                   ++  +    F     K+G++ + H +R F AT    AG     + A  G  T
Sbjct: 302 KKELLGMPISIRRVYKLFNTVNEKSGMHVTPHMMRHFFATQGQIAGVPIEHMAAALGHST 361

Query: 316 VDQAETYTKGADR 328
                 YT   + 
Sbjct: 362 SYMTSKYTHIKEE 374


>gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB]
          Length = 348

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 94/322 (29%), Gaps = 20/322 (6%)

Query: 15  RTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R G++ +   +     RIR               A    T      + P +   +L  
Sbjct: 3   VYRRGEVYWVDVKVKGHPRIRKSAATSERLKALDFEAALRRTLTGVVSHEPIRGEMSLSE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR---KHT 129
            ++   K       +  +      +   ++ K G D   + I    +R  V       ++
Sbjct: 63  AMARAFKVHWNHKKSAKTV---GFHARSLLEKLGNDIRLKDIGENEVRGLVRQLQSDGNS 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++    L+ ++ L + +  +  V           K K   +R  + E+  +  +     
Sbjct: 120 AATINSKLSVLQTLLRMSCNEWRVIDRVPRFDR-LKEKEGRLRTLSPEEESRLLALLRRT 178

Query: 190 SQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +   A  ++  L +G   S+      + +           ++G    + +      +L 
Sbjct: 179 GRHDAADLYMVLLDTGASLSEVLSLKWKGVDLVGGKIGIDVESGRNRILPMTRRVRSMLM 238

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302
                      +N        Q    +K    + G+        H +R   A  +   G 
Sbjct: 239 QRMGMGIKSPFSNV----TYQQAEYNWKWVRKQMGLGGDPGFVIHSLRHTFAARTVQRGI 294

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L A  G  T+   E Y +
Sbjct: 295 GLPALKALLGHSTIRLTERYAR 316


>gi|290474206|ref|YP_003467083.1| prophage integrase [Xenorhabdus bovienii SS-2004]
 gi|289173516|emb|CBJ80296.1| prophage integrase [Xenorhabdus bovienii SS-2004]
          Length = 385

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 104/379 (27%), Gaps = 57/379 (15%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G   Y  +    G+RI+      +    A                       T     
Sbjct: 5   RRGNTWYGNYTTPSGKRIKESL-GTTDKKQAQELHDRRKAELWRIERLGDFPDVTFDEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---- 131
             + +          S    +      +        + IT   I + +   ++  S    
Sbjct: 64  LRWIEEKADKK----SLDDDKGRMAFWLEYFEGVRLKDITEARIYTAISKMRNRKSKQRW 119

Query: 132 -------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                    +  + L+ M+ L + A  +++  +     ++ P  
Sbjct: 120 ESRVTAAQKKGKEVPAYTEVSVSVATKAKHLSLMKSLLR-AAERDWKWLEKAPVIKVPAV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           + + +R     + Q+      E  Q     +F L +GLR S+        +         
Sbjct: 179 RDKRVRWLEPHEAQRLIDECPEPLQS--IVKFALATGLRRSNIINLEWSQIDMQRQVAWI 236

Query: 227 QKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------S 270
                     I V L +   ++L         +   + K   N                +
Sbjct: 237 HPDQSKSARAIGVALNETACRVLRAQIGNHNKWVFVHTKPSTNPDGIVMPNIRKMRVDDN 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             + +   +AG+ +   H +R   A+    +      L    GW++++    Y   A   
Sbjct: 297 TAWNSALKRAGIEDFRFHDLRHTWASWLVQSDVPLSILQEMGGWESIEMVRRYAHLAPNH 356

Query: 330 RLGIKNSRRISSVVDSDDP 348
               +++R+I  +  +  P
Sbjct: 357 --LTEHARQIDELFGNLVP 373


>gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 331

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 81/311 (26%), Gaps = 37/311 (11%)

Query: 74  LISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
           LI  +   + A   +++ ++  S+   F  +++ +               +  + I + +
Sbjct: 8   LIERFFGQRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDAELIVAFL 67

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPKRKTEGIR 172
           +     R  +P++    LT++R  F++   +E                +   +     +R
Sbjct: 68  DDLDSGRHASPATYNLRLTAIRGFFRFLAFEEPAYSGQIQRVLAIPGKIGSKREVQFLLR 127

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--G 230
              +  +         G +  +     + +G+R S+        +     +         
Sbjct: 128 NEIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGR 187

Query: 231 TIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV--- 282
              T  +       L               F      +M+              A     
Sbjct: 188 KERTTPITRMLNATLKAWLDEPPVGNGNALFPTVHGGQMSPDAVQYLLAKYVLAASKGCL 247

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
                  S H +R  +A    DAG  +  +    G ++    + Y           +   
Sbjct: 248 SLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAALAKI 307

Query: 337 RRISSVVDSDD 347
                      
Sbjct: 308 DPFDKQSPGRF 318


>gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola
           str. M6]
 gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6]
          Length = 320

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCSFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   R +              +       E    G + R  
Sbjct: 99  LFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++    V  +Q        +  G                 I   L + 
Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L                   + A        A A KAG+       HG+R  +AT +
Sbjct: 219 EHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 333

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 79/306 (25%), Gaps = 40/306 (13%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            R    H    +  Y  A +      +          TL+ L  E+   +   +L+ ++ 
Sbjct: 39  RRTSRRHAQEKLTKYNKAHSERLSVTDAQTDEYAVTITLEEL-REWLAHSLTQNLSRSTI 97

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQ 150
               +   Q      +   R        +        P   +  Q    +  +       
Sbjct: 98  ARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSALPHVLTVAQVKQLLAAV------- 150

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                                    +      +   +   + R A E    SGLR ++  
Sbjct: 151 -------------------ERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELV 191

Query: 211 RAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------- 262
              V  + +    I+          V L    ++ L            +  ++       
Sbjct: 192 SLNVGDIDHEQRVIRVTGKGNKQRRVPLGLPALQALERWIAESRPIMQSTSEEALFLGVR 251

Query: 263 --KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             + NA Q        A  A ++    H +R  +AT   + GA    +    G  ++   
Sbjct: 252 GGRWNARQVRDELNKAALHADLDVVRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTT 311

Query: 320 ETYTKG 325
           + YT  
Sbjct: 312 QRYTHV 317


>gi|326693538|ref|ZP_08230543.1| prophage Lp2 protein 2, integrase [Leuconostoc argentinum KCTC
           3773]
          Length = 355

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 98/336 (29%), Gaps = 27/336 (8%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             ++              +  A+   + K     + +     +  +  E+        L 
Sbjct: 22  GYKKKTKSGFLTKKEANNW--AIETESQKINDTLTIKDGN--VADMFIEWYHVFKEPQLE 77

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKW 146
             S+  + +    I     +    +I +K  +  +     T   SS       +    ++
Sbjct: 78  TKSKTWYTTTHKVISDYWLNKKLSEINSKMFQELINDYGKTHVKSSVSHVKNMISSFIRY 137

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---- 202
           AV ++Y++ +   +++         +     ++ + +   +E          ++ +    
Sbjct: 138 AVDEDYISKDFTRNIKSFSSVESKDKDLKFLEVDELEKLKNEIINNDAVSSRMILTAIYS 197

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------ITVELPDGFMKLLAMT 248
           G R S+              +I   KT                   V++P  FM++    
Sbjct: 198 GARYSEVAGLTRDDFNFENNTITINKTWQAEDRAYKSTKTVSSNRVVDMPTDFMEIAKSW 257

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
             G    F + +         +   +    K      + HG+R   A+           +
Sbjct: 258 HYGSRFAFESTNGLPPTNNAVNKQLRRYLEKNDSKIITFHGLRHTHASYLLSRDVAIQYV 317

Query: 308 MATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSV 342
               G   V+     YT   ++ R   + S+ +S +
Sbjct: 318 SERLGHADVNITLSVYTHLLEKKR-SHETSKALSEL 352


>gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 383

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 91/364 (25%), Gaps = 44/364 (12%)

Query: 8   PPFVTKERTR---HGKIIYY---FRKGHGRRIRLP---------------YPHESTFIPA 46
           P    + R +   +G    Y   +R G      L                  +       
Sbjct: 10  PKNFVRLRNKKLANGNKSLYLDIYRDGVRSYEFLKMYLIPEKNNVTARQQNENTLQAAEV 69

Query: 47  YMSALTGSTPKREY--INSPRKKPTTLKWLISEYRKSAHWGSLAV-NSRISFESYFDQII 103
             S    +  K +    ++  K    L   +  YR           +   +         
Sbjct: 70  IRSERQNAIVKGQAGITDASAKNKLLLMDWLKIYRAKLEKRQYKDISHVDNLMRILAGYK 129

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLT-------------SMRVLFKWAV 148
             +       I     +  ++  KH   S    + L              ++    K   
Sbjct: 130 PAT-MARLTGIDKDFAKGFIDYLKHDYVSYKGNKHLQNSTIVDYVRTFSVAINAAIKDGY 188

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +            +  +  +      ++E++Q+             A+ F  +SGLR SD
Sbjct: 189 KIINPFKLLSSDEKVKQPDSH-REYLSQEELQKLMITPCRRDDIGKAYLFACFSGLRISD 247

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                 +++                  EL              +            N   
Sbjct: 248 IRALRWKNIIVEDGQFFAMLFMQKTGKELKIPLPDKAMEIISIRGNDEDKVFFLPSNP-T 306

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A  AG+NK  + H  R   AT+    GA  + +    G   V   + Y K  
Sbjct: 307 VEDNLKKWAEAAGINKHLTFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVV 366

Query: 327 DRIR 330
           D+ +
Sbjct: 367 DKKK 370


>gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
 gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus
           faecium E980]
          Length = 380

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 124/379 (32%), Gaps = 52/379 (13%)

Query: 13  KERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + + ++G+  + F+         G+ ++    +  T   A   AL     + E     ++
Sbjct: 6   QYKKKNGEKAWKFQAYLGINPETGKSVKTTRRNFKTQREAK-LALARLQSEYENNLLKKE 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
           KP T K +   +       ++  ++ +  E  F   ++ + GD    +IT   I+  ++ 
Sbjct: 65  KPKTYKDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGDIYISEITPIKIQKLMDK 123

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---- 181
             +   +A + +    ++FK+AVR   +  NP  ++ +PKR+ +        D +Q    
Sbjct: 124 WANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKTTTEEPFYDKKQLKLF 183

Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFS 223
               +     + +  F  L  +G+R  ++     + +                       
Sbjct: 184 LDVLYEQPNIKVQAFFRLLAMTGMRKQEAGALEWRDIDFKAKTVNIYKAVTRTANGLEID 243

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----KAKAT 278
                  + I         KLL    +            + NA            +    
Sbjct: 244 TTKTVGSSRIISIDQGTLDKLLEWKEVALPPSDDWLIFGQTNAKNPHDIMSLDTSRKWLL 303

Query: 279 KAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
                            + HG R   A++  + GA+  E+    G + +     TY   +
Sbjct: 304 NIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVS 363

Query: 327 DRIRLGIKN-SRRISSVVD 344
              +L  +  + + +  +D
Sbjct: 364 ---KLAKEQLADKFNKFID 379


>gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 363

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 100/350 (28%), Gaps = 34/350 (9%)

Query: 1   MTPSLRLPPFVTKERTRHG------KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M P  +      + +   G      K +Y  R   G++          ++        G 
Sbjct: 1   MPPKKK--GRQRRPKGTGGFFWSESKQVYIARVIVGKKP----DGSPHYVERSDPTEAGL 54

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
             K E +  P     TLK  +  + KS     L   ++   ++  D   +   G      
Sbjct: 55  VKKLEEVAPPSSG-ITLKAWLERWLKSLEGTELRQRTKDVRKTATDLYFVPTLGHIRLTD 113

Query: 114 ITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +T   I   V+       + S+   +L ++      A  +  +  NP L V+RP +    
Sbjct: 114 LTHLQITEAVKKWTATLKSASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQPKAV 173

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             P+T  D+ +  +   +             +G R  ++    V        +I   +T 
Sbjct: 174 FDPFTVADLNRIIADAVQRPATY-PCALYAATGCRMGEALALDVTSFDPAAGTIAITQTQ 232

Query: 231 TIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                  P      + +                       F     ++ + +     +  
Sbjct: 233 DARRERGPAKTSNSIRVIEVPADARPALVSAIGTRTDGPLFTTPAGRRQSKSNVRKAWIR 292

Query: 276 KATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              + G+     H  R   AT    AG    ++ A  G         Y +
Sbjct: 293 LLNRLGLKYRAPHKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIYAR 342


>gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 341

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 90/336 (26%), Gaps = 41/336 (12%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  +GK +   Y     G+R+R           A+ +       K+ ++     +   L
Sbjct: 4   RKQPNGKWLCECYPNGRDGKRVR-KQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH-L 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             +I ++              ++  S    I    GD    ++T        E+R     
Sbjct: 62  SEVIDQWHLLYGQTLADPKRLMAKRSI---ICNGLGDPIASELTAGDFTKYREARLKGEV 118

Query: 127 ---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                       P +      ++  +F    +  + +    L+     +  EG   +   
Sbjct: 119 KNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAP 178

Query: 178 DMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +  +        SQ     +  +  L +G R S++       L     +    K     T
Sbjct: 179 EEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRT 238

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVR 290
           V +     + L        T                  F+    +AG+        H +R
Sbjct: 239 VPISQDLYEELPKNRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTHVLR 285

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+     G     L    G   +     Y   A
Sbjct: 286 HTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA 321


>gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 275

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 77/265 (29%), Gaps = 21/265 (7%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-N 156
            +    G      I    I      +     +  S    L ++R L   AV  E +    
Sbjct: 5   HLSPFFGKKKLIDIGPAEIEEFKAKKLAEGQSKKSINNHLAALRKLLNLAVEWEVIPRAP 64

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                          +  T ++ ++         + R      L +GLR  +      + 
Sbjct: 65  KVKGFRAKTEYITEEQFLTFDEAERLVHA--AAPEWRTFIITALKTGLRVGELLALKWED 122

Query: 217 LQN-----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM- 264
           L                     K G    V L D  + +L      K T+       +  
Sbjct: 123 LDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAVLKAHRHLKGTYVFCEADGRRL 182

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             ++      +   +A + K    HG+R   A+     G +   +    G ++++    Y
Sbjct: 183 THSRVKDVVPSTCRRAQLAKRLTTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRY 242

Query: 323 TKGA-DRIRLGIKNSRRISSVVDSD 346
           +  + D  R  +K     SSV + +
Sbjct: 243 SHLSPDVKRDAVKLLDAPSSVANGN 267


>gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 412

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 102/342 (29%), Gaps = 22/342 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPA-----YMSALTGST 55
           S RLP F T+     G+ IY  +    G  R + +      +   A      +       
Sbjct: 37  SRRLPGFGTRF-YASGRTIYIVQAAMQGRTRTVTIGNAKILSEAQAMDVARRVLLRAQVG 95

Query: 56  PKREYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                    R+K       +  Y +  S  W +  +++   +    + +          +
Sbjct: 96  HNPAERRKKRRKVPLYADFLDTYWRKVSPSWKTSTLHTHGLYRQ--NYLQSAFAGMFLDE 153

Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I   H++           P +A +    +R L   A                   K    
Sbjct: 154 IEQSHVQEWFNRVTEIGGPGAANRSCEILRALMNKAEEWGIKPECSNPCSSIRMNKRRKC 213

Query: 172 RPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +  +   +      +  +        A + L+ +G R S+        ++     +  
Sbjct: 214 ERFLSDQEFRRLGAAIDKHRKSRPVHCAALQLLILTGCRRSEITGLTWSEVKGRRLLLTD 273

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
            KTG   TV L +    ++   P  K    +  + +   +   +  ++    KAG+N   
Sbjct: 274 SKTG-PRTVWLGEAAWTIIKCLPRHKRRPEVFFNPKTGGSVDLTCLWRDVREKAGMNGVR 332

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R   A+ +A    T   +    G + V     Y    D
Sbjct: 333 LHDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDD 374


>gi|320654613|gb|EFX22618.1| putative integrase; DLP12 prophage [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 387

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLRDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|319945012|ref|ZP_08019274.1| phage integrase family site-specific recombinase [Lautropia
           mirabilis ATCC 51599]
 gi|319741582|gb|EFV94007.1| phage integrase family site-specific recombinase [Lautropia
           mirabilis ATCC 51599]
          Length = 396

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 111/361 (30%), Gaps = 34/361 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTF---------IPAYMSALTGSTPKR 58
             +  E    G I++ +R    G+R +L                   A      G +P +
Sbjct: 24  RGLYVEVLPSGSIVWRYRYRLDGKREKLTLGKYPALTLKNARLKWDEAAHQVAMGESPAK 83

Query: 59  EYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           +         + TT+      + K          +      Y ++ I+   G    R IT
Sbjct: 84  KKQQEKVSGAENTTVVDFAERFFKDIQSRDRKDVTMP--RRYLEKDILPHIGSKPVRDIT 141

Query: 116 TKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGI 171
            + +R+ +  +K     ++A Q    ++ +F +A+    +       L +    R     
Sbjct: 142 AEDVRNVIWRKKEQGFDAAAGQVRGLLKRMFDYALTCGLIQANPVMALPMRHVYRAAARD 201

Query: 172 RPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIK 225
           R  T ++++ F       +  R   +AF+ +L + +R S+   A  + +  N        
Sbjct: 202 RALTPDEIKLFLRAMQTSNIRRQFKIAFQLILMTLVRKSELMLAQWKDVHVNEGEWHIPV 261

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATK 279
                  + +       + L        +        +            +   K     
Sbjct: 262 ENSKTGKLHIVYLSTQAQTLFKELKPLASSSDWVLPGRGTLAKPFANNALNQALKVSLQG 321

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336
             +   + H +R+ ++T+  + G  +  +              Y +   A++ R  ++  
Sbjct: 322 QEIPAFTIHDLRRTASTLLHEQGWPSDVVEKALNHTIGGVRGVYNRAEYAEQRREMLQAW 381

Query: 337 R 337
            
Sbjct: 382 A 382


>gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
 gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547]
          Length = 336

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 86/310 (27%), Gaps = 60/310 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138
              + ++  ++ +    +       G  ++R++T   +RS    R       S+  +   
Sbjct: 21  RGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRAAAGLARSTLARGTA 80

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----------------- 181
           S R  F W V  E + ++P   +  P+ +         E   Q                 
Sbjct: 81  SQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVEGGGTRPEPRATGGA 140

Query: 182 -----------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                       +   + R   E L  +G+R  +        + 
Sbjct: 141 GDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGIRVGELVSLDTGAVS 200

Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNAT 267
               +++          V      ++ L                    F+     +++  
Sbjct: 201 LQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGEALFLGVRGGRIDPR 260

Query: 268 QFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
           +        A +     +   HG+R  +AT   DAGA    +    G  ++   + YT  
Sbjct: 261 EVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHV 320

Query: 325 GADRIRLGIK 334
             +R+R    
Sbjct: 321 SVERLREAFD 330


>gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
 gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. TW14359]
          Length = 359

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V                 +   +  P   ES  + A    L     K E   + R
Sbjct: 12  KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H +       
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL------- 286

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253]
          Length = 395

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 114/334 (34%), Gaps = 16/334 (4%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPR 65
           V+++  R   ++ Y   G  R I + +  E     A   A+            +     +
Sbjct: 43  VSRKEGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQERENK 102

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +   T   L ++Y       S   +     + Y D I    G      IT   I    ++
Sbjct: 103 RMELTFDELFNQYYL-PWAKSAKRSWGKDVQRYRDHIRPAIGQRLLSDITPASILRLQQT 161

Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +   ++  + +  ++ +F WA RQ   +++P   V+  +      R +T++++++  
Sbjct: 162 LSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRIF 221

Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELP 238
                 + P  A    L   +GLR  +   A  +H+       +  +T+     I     
Sbjct: 222 LSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLNS 281

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295
                +  +       +     KQ M  +     F+    +AG+       H  R   A 
Sbjct: 282 LAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRAGIFDKEVCIHTCRHSVAA 341

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +    G T +++ A  G ++   ++ Y     + 
Sbjct: 342 LIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQR 375


>gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 16/273 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           EY         + N+   +           G+    K        G  +  + P+S    
Sbjct: 8   EYETYLRSEERSANTIAKYIRDLRAFFSFMGNEPLCK-EAVVSFKGYLTESYAPASVNSM 66

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L ++    +W+   +           +    T   +  T+E+  +      E    RL+ 
Sbjct: 67  LAAVNGFLEWSGMAQMKVKP---LKIQKCLFTRPEKELTQEEYWRLIKAAEEKGNDRLSM 123

Query: 197 E--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--PDGFMKLLAMTPIGK 252
               +  +G+R S+     V+ ++     +  +    ++ +         +      I  
Sbjct: 124 LLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKNRVVFLPKVLCRALQRYCRRYGIDI 183

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMA 309
              F     + +N T      KA   +AGV       H +R   A            L  
Sbjct: 184 GPVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTYYKLEKDLSRLAD 243

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             G  +V     YT  + R      + R++  +
Sbjct: 244 LLGHSSVTTTRIYTMESGR-----SHIRQLERI 271


>gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG]
 gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG]
 gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG]
          Length = 394

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 107/379 (28%), Gaps = 60/379 (15%)

Query: 11  VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++  + + GK  + F          G+ I++      T   A   A    +      +  
Sbjct: 4   ISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAESEIIRGHSHY 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           + +   +   ++++       ++   S I +       II K GD    K T K  +  +
Sbjct: 64  QTERILMADYLNQWITKLKV-NVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFI 122

Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S  +   S         ++    K AV   Y+  NP + VE      +  +        
Sbjct: 123 SSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKD 182

Query: 181 QFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS------------ 223
           Q  SF     + +       +      GLR  ++       +  N  +            
Sbjct: 183 QVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFNKNTLSVNATRIYRAE 242

Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------------ 261
                      + +   +  T  +      LL        +                   
Sbjct: 243 TGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVF 302

Query: 262 ---------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
                    Q + +   +  F     +AG+     H +R   A +  +AG +  ++    
Sbjct: 303 TYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDL 362

Query: 312 GWKTVDQAETYTKGADRIR 330
           G K +   + Y + +   +
Sbjct: 363 GHKDISTTQIYAEISPAKK 381


>gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
 gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810]
          Length = 332

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 86/320 (26%), Gaps = 54/320 (16%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127
             ++  +    H     + ++  ++      ++            ++    +RS + +R 
Sbjct: 10  DAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARA 69

Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
            T +SA    +   S+R    W      +  +    +  P+R        T +   +   
Sbjct: 70  ETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLD 129

Query: 184 --------------------SFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGVQH 216
                                   +  + R               SGLR S+        
Sbjct: 130 GLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSR 189

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------- 266
           +     +++ +        V +    ++ L           +                  
Sbjct: 190 IDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVR 249

Query: 267 ------TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                             +AG+  + + H +R  +AT   + GA    +    G  ++  
Sbjct: 250 GGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLAT 309

Query: 319 AETYTK-GADRIRLGIKNSR 337
            + YT   A+R+R  +  + 
Sbjct: 310 TQIYTHVSAERLRRTVDQAH 329


>gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23]
 gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW]
 gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23]
 gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II]
          Length = 394

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/379 (12%), Positives = 107/379 (28%), Gaps = 60/379 (15%)

Query: 11  VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++  + + GK  + F          G+ I++      T   A   A        +  +  
Sbjct: 4   ISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAEAEIIKGHSHY 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           + +   +   ++++       ++   S I +       II K GD    K T K  +  +
Sbjct: 64  QTERILMADYLNQWITKLKV-NVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFI 122

Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            S  +   S         ++    K AV   Y+  NP + VE      +  +        
Sbjct: 123 SSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKD 182

Query: 181 QFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS------------ 223
           Q  SF     + +       +      GLR  ++       +  +  +            
Sbjct: 183 QVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFSKNTLSVNATRIYRAE 242

Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------------ 261
                      + +   +  T  +      LL        +                   
Sbjct: 243 TGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVF 302

Query: 262 ---------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
                    Q + +   +  F     +AG+     H +R   A +  +AG +  ++    
Sbjct: 303 TYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDL 362

Query: 312 GWKTVDQAETYTKGADRIR 330
           G K +   + Y + +   +
Sbjct: 363 GHKDISTTQIYAEISPAKK 381


>gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
 gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612]
          Length = 338

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 99/316 (31%), Gaps = 38/316 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
           K+  TL+    E+ +          ++  +++   ++ ++ + GD     IT + ++  V
Sbjct: 18  KRSVTLEAFSREWIRKRGDEGKIKESTLTNYQRIIERYLLPELGDLRLDTITVEVVQDFV 77

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++ +      S+    +  +  + + AV    +  NPC  +   K+           + Q
Sbjct: 78  KTLERRALNTSTIRGIIGRLSSIMEKAVEAGLINKNPCGHIVIQKKWQTTTGKILTIEDQ 137

Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +  + W    +  L  A +  L++G+R S+      + +      I+ ++    +     
Sbjct: 138 KALTHWLLAHEHNLSLAVQLGLFAGMRISEIAALQWKDIDLKNGFIQVRRNVQRVKNHDA 197

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ----------------------------KMNATQFS 270
                +  +        F +                                  +     
Sbjct: 198 GQRKTINQIGTPKSPKAFRSIPITSILMKSLKGYEKSTVKPEAFVIAKKGGSAYDVRTIQ 257

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD- 327
            +FK   +   ++    H +R   AT + ++G     +    G          Y    D 
Sbjct: 258 RYFKKIISVLKLDNYRFHDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITDL 317

Query: 328 RIRLGIKNSRRISSVV 343
             +  +    +++S +
Sbjct: 318 HKKQEMVLLDKLNSTI 333


>gi|296444671|ref|ZP_06886635.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257939|gb|EFH05002.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 429

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 102/377 (27%), Gaps = 53/377 (14%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTF----------IPAYMSALTGSTPKREYI 61
            +   + G  I  FR   G++                          +       +    
Sbjct: 38  YRRGAKGGTWIARFRDDAGKQHYEALGAADDAVDADGASILDWAQAQAKARAWFSRIANG 97

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +    ++   + +Y         +        +   +I    GD D  K+TTK IR 
Sbjct: 98  GEQQGGVYSVGNALDDYFADRERRG-SKGLAKDKAAGNLRIRPDLGDVDLSKLTTKKIRD 156

Query: 122 GVESRKHTPS-----------------------------SAIQFLTSMRVLFKWAVRQEY 152
              +    P                              +A + LT ++    +A  +  
Sbjct: 157 WHSALASAPRLARAGRSAEPRKETAIDTGDHDEVRARRATANRTLTVLKAALNFAFHEGR 216

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
            A +      +P ++ +        D +  +   +   + R      L +G R  +  R 
Sbjct: 217 AATDDAWRKVKPFKEVDAAVVRFLSDDECRRVVNACAGEFRHIVRGALLTGCRYGELTRM 276

Query: 213 GVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNAT 267
            V        + +++  K G    V L D    L   L     G    F  +D      +
Sbjct: 277 IVADYTPESGMIAVRLSKAGKPRHVALNDEGRALFDELTSGKPGDGLIFTRDDGGAWGDS 336

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                 +A   +A +    + H +R   A+  A  G     + A  G       E  Y  
Sbjct: 337 HQQRPLEAACARANIEPAATFHVLRHTYASALAMRGVPMGVIAAQLGHADTRITEKHYAH 396

Query: 325 -----GADRIRLGIKNS 336
                 AD IR  +   
Sbjct: 397 LAPSYVADTIRAALPAL 413


>gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
 gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae
           ATCC 49626]
          Length = 401

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 96/369 (26%), Gaps = 57/369 (15%)

Query: 14  ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +R   G        G    G+ I+      +        A+             + K T 
Sbjct: 8   KRNAKGIWCCRLYLGRDFSGKLIQPYTSFSAATTEEEAQAMA-ELWAAHLTADGKVKSTN 66

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L  L+ EY +       + N+   ++S+    I++         +      +  +     
Sbjct: 67  LVQLLCEYTELKRRNGASPNTIRQYQSFVKNHILKYLPRATVDTLVPADFTAFEQQLLKP 126

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + ++ I     +R  + + V     +INP  +V +P ++        +    
Sbjct: 127 REDGGAGLSRNTVINVHQFLRSAYNYFVASGICSINPLFNVAKPSQERHEAVSMEEWGFA 186

Query: 181 QFKSF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226
           +                 +S  +    A    L +G+RC + C    Q + +    I   
Sbjct: 187 EIDKAITGVLDKSFTAQEYSFETVYAFAAWLALKTGMRCGEVCALRRQDVNHMQRYIHVS 246

Query: 227 ----------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
                            K      V + D  + L+      +        K         
Sbjct: 247 GTVIEEPRRQPYRRDVTKGRRHRNVSITDADLALIDRYSQLQGKRMGVAIKGATPLVSVT 306

Query: 263 --KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              M  T+ S  F A      +    + H +R   A+     G     L    G      
Sbjct: 307 GAFMRPTKVSSAFTALRRSLELPAGITFHTLRHTHASWCLANGVDLKTLSERLGHADEAT 366

Query: 319 A-ETYTKGA 326
               Y    
Sbjct: 367 TLRIYAHVL 375


>gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7]
          Length = 282

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 85/268 (31%), Gaps = 21/268 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L  +   +     LA  ++ ++ S   Q+          ++   H+++     +  R   
Sbjct: 4   LRQQMIDAMVLRGLARRTQQAYLSVVAQLAAHY-HCSPDRLDGAHVKAWLLHRITERHLA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  Q + +++  F   + +        +++             ++E++ +     +  
Sbjct: 63  YTTVNQAVCALKFFFDIVLGR----TAEAITIPYAHTPQRQPEILSREELAR-LFEAAAN 117

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245
            + R        +GLR S+ C   V  +          +   K G      L    ++ L
Sbjct: 118 LRARTLLMTAYAAGLRVSEVCALRVADIDSAPDRMCIRVVAGKGGKDRYTLLSPSLLEAL 177

Query: 246 AMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
            +     +       +     Q  + +     +     +AG+ K+   H +R   AT   
Sbjct: 178 RVYWRICKPRVWLFPRATDAAQPYDISSAQRAYYRARDRAGITKTGGIHTLRHAFATHLL 237

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           +AG     L    G   +   + Y   A
Sbjct: 238 EAGVDLATLAKLLGHGHLSTTQRYLHLA 265


>gi|194466593|ref|ZP_03072580.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453629|gb|EDX42526.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 370

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 116/363 (31%), Gaps = 45/363 (12%)

Query: 11  VTKERTRHGKIIYYFRKGH---GRRIRLPYPHES---TFIPAYMSALTGST--PKREYIN 62
           +  E T+ G+I +  +      G+  ++    +    T       AL        R   +
Sbjct: 1   MWAETTKDGRIKFREQYKDPLTGKYKKVSVTFDKNTNTTRRKAQIALESKIQHKLRHVDD 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              KK  TL  LI E+        +  ++ I+ +S    I    G D     I    + +
Sbjct: 61  GTIKKGVTLGELIDEWLPIYKTM-VKEHTYINNKSRATIIRNTLGEDVLVANIKPVLLSN 119

Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEGIR 172
            ++       +  SS  +F  ++  L ++A +  Y+  NP    +   +          +
Sbjct: 120 YLDDLIYKKNYKNSSVQKFKGTLGNLLRYAKKHNYIKTNPIKEADVNYKKSSAADKIEEK 179

Query: 173 PWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------ 225
            + +E++ +   +  + S       EFL  +GLR  ++       +              
Sbjct: 180 YFDEEELNKILKYMYKRSPHYGRFCEFLYQTGLRFGEAAALIPNDIIEKDGKQVAVINST 239

Query: 226 ---------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN----DKQKMNATQFSIW 272
                     +   +   V LP   ++++                      MN T  + W
Sbjct: 240 LVNKKKQPSPKTAKSNRDVTLPKRALEIIHDEEKEANGTQFIFSSGRYGYPMNNTTLNDW 299

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY---TKGA 326
            +    +  + K  + H  R    +  A+ G   + +    G K     +  Y   TK A
Sbjct: 300 LREAKKELNIQKITTVHTFRHTHISKLAELGVPLYLIQNRVGHKDATTTKDIYLHVTKKA 359

Query: 327 DRI 329
           ++ 
Sbjct: 360 EQQ 362


>gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L]
 gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L]
          Length = 322

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 82/300 (27%), Gaps = 24/300 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +   + K  T+K  +S   +      L   +   +E +    +  +G    +++T +
Sbjct: 19  DRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVE 78

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI   + S   +  + +  L  ++          ++ IN   S++             +E
Sbjct: 79  HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDRE 138

Query: 178 DM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230
                           +   +   +  +G+R     +   +H+      ++      K  
Sbjct: 139 INLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------MNATQFSIWFKA 275
             I +   D   ++L       +        +                      +     
Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNGGRIATSPTNNNITKRLSK 258

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +   G+   + H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 259 HSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium]
          Length = 315

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYT 313

Query: 324 KG 325
             
Sbjct: 314 HV 315


>gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 351

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 81/321 (25%), Gaps = 36/321 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN---SPRKKPTTLKWLISEYRKSAHW 84
            +  R+R           A+   +      + ++     P      L  L+  +      
Sbjct: 26  PNAPRVR-KQFATKGEALAFERFVLDPDKGKPWLEGQGEPTDGRH-LSDLVELWF---GR 80

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----------------KH 128
              ++    + +S    +    GD      + +   +  E+R                  
Sbjct: 81  HGQSLRDGEARKSKLLTVCNSLGDPLAVNFSARDFAAYREARLSGDISDRRAINQKKQGV 140

Query: 129 TPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           TP++  +    +R +F    R    +       L   +            +         
Sbjct: 141 TPNTVNREHAYLRAVFNELKRLGEWQGENPLDGLRAYKVAESELAFLYLDELKSLLAACV 200

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            S  +   +  +  L +G R S+        +  N  +    K+    +V +       L
Sbjct: 201 ESPNTDLLMVVKLCLATGARWSEVEELTQSQVSPNRVTFTRTKSKKSRSVPISPELYVQL 260

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                   +              F +  +    +    ++ H +R   A+     G    
Sbjct: 261 PRKRGRLFSDC---------YRAFEMVVERAGLELPPGQNTHVLRHTFASHFMMNGGNIL 311

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G  T+     Y   A
Sbjct: 312 VLQKILGHSTIAMTMRYAHFA 332


>gi|299821514|ref|ZP_07053402.1| bacteriophage integrase [Listeria grayi DSM 20601]
 gi|299817179|gb|EFI84415.1| bacteriophage integrase [Listeria grayi DSM 20601]
          Length = 390

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 109/388 (28%), Gaps = 55/388 (14%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R R+GK  Y   +R     +I+       +     + A      K ++ +         
Sbjct: 4   YRKRNGKWEYRIKYRDPATGKIKEKMKSGFSRKSDCVEAAAEMEKKIKHGHFNNDASVMF 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                ++ K     +   ++    E  + ++ +  G     +IT+   +  + S     +
Sbjct: 64  HEYALKWLKDYASNN-KPSTVRPREIEYRRLAKHFGYAKINQITSIQYQDYLNSLNEKYA 122

Query: 132 S--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +       ++ R++FK A +   +  +P L  + PK+           + ++ K F  E 
Sbjct: 123 TNTISGTHSTARMIFKRAYQDNLIDRDPTLYAKLPKKIETAQSIQDSINNRRVKIFSREE 182

Query: 190 SQPRLAFEFL-------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               L                  + +G+R  + C      L         + T TI    
Sbjct: 183 ISLFLHNAKTQGLSNDFEIFSLLVNTGMRVGELCALQENALLKKENGYYIRITQTIYNPT 242

Query: 237 LPDGFMKLLAMTPI---------------------------------GKETFFINNDKQK 263
                 +LL                                       K   F  +    
Sbjct: 243 NKMDKYQLLPPKTKGSIRDIEISYYIYELIRKQIIKQKELYIALGGAMKRFIFSKDFGYP 302

Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
               Q +   +       +    S H  R   A+I  + G     +    G  T +   E
Sbjct: 303 ETPKQIANRMRRILKLCDLPSYYSPHNFRHSYASILEEEGVPTLYIQKQLGHSTFETTKE 362

Query: 321 TYTKGADR-IRLGIKNSRRISSVVDSDD 347
           TY    ++  +   +    I+  + S+ 
Sbjct: 363 TYIHLTEKTQKEASEKVLNIAESLSSER 390


>gi|116872612|ref|YP_849393.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741490|emb|CAK20614.1| phage integrase family protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 377

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 102/363 (28%), Gaps = 37/363 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK          + +          I      +     K +           L      
Sbjct: 15  NGKYTTRINVK-VKGVWKTQRVTKDTIEEVEYKVAKLNKKSKDGTLTLNSSLKLFDFCDI 73

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQ 135
           Y K+     L+ ++  S+E+ F ++    G+    KI     +  +         S+   
Sbjct: 74  YIKTYVEKILSDSTLNSYENAFRELKDYFGNIKLDKIEPLEYQLFINHLGKELAYSTVET 133

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP-- 192
               +  ++  A+   YV  NP   V+   +    ++  + ++D         E S    
Sbjct: 134 RHKKITAMYNKAIMLNYVKSNPTSGVKIAGQDVAAMKLQYLEDDQVAHLKKLVEDSMSVS 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------TIITVELP 238
           R      + +G+R  +        +      I  + +                  T+ + 
Sbjct: 194 RAVIFLAIQTGMRFGEIIALTWNSINFERQRIVVKNSWDYKKKKTFVPTKTEERRTIFID 253

Query: 239 DGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK-ATKAGVNK 284
           D  +  L       + +             F   D Q ++    +   K      +    
Sbjct: 254 DSTVDYLKKYKKWSKEYISNENITNDLSLVFCTRDNQPIDNQSCNKMLKKLFMNISNEYV 313

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           + H +R        +AG     +    G   +      YT  + ++R   +   RIS+  
Sbjct: 314 TLHKLRHTHTVQCLEAGLDIIYVSERLGHADISTTMEYYTHVSKKLRNMNE--DRISNYF 371

Query: 344 DSD 346
           + +
Sbjct: 372 NKE 374


>gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741]
 gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741]
          Length = 370

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 103/353 (29%), Gaps = 43/353 (12%)

Query: 11  VTKERTRHGKIIYYFRK------GHGRRI-RLPYPHESTFIPAYM----SALTGSTPKRE 59
           +     + G  +Y FR       G  + + R  +  ++    AY     +A  G   +  
Sbjct: 4   IKAYTNKKGDKLYKFRIYVGFVDGKSKYVNRAGFKTKTEVKKAYQEVKFAAYQGEYRQES 63

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            ++   +   T   L   + +         +  +  +     +     +   + IT    
Sbjct: 64  NLDVSLR---TFGDLYDFWFEQYKNTVRGSSYYVIKKGLDKNVYPYLKNKQLKNITLIDC 120

Query: 120 RSGVESRKHTPSSAIQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++       T +     + S+  + + ++AV  + +  NP  +V +P+ K          
Sbjct: 121 QNLFNKLLKT-NPGNYVILSIYTKKILQYAVTLKLIPENPMNNVIKPREKKTYGSNNYYS 179

Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219
                        E     + F  L YSG+R  +     V  +                 
Sbjct: 180 KEELKTFLAYSKKEKFHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDA 239

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                 +     T      +  +  +    L+         F      +  +    ++W 
Sbjct: 240 DSRFELHKPKTTTGNRIISVDPDTINLVSTLIKDKKKDDFIFRFYGCSKPYSPRTVALWK 299

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                KA + K S HG R    ++  ++G    ++    G   V+     YT 
Sbjct: 300 NKIIKKANLRKISLHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTH 352


>gi|28198670|ref|NP_778984.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681361|ref|YP_001829521.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056761|gb|AAO28633.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631471|gb|ACB92247.1| integrase family protein [Xylella fastidiosa M23]
 gi|307579807|gb|ADN63776.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 339

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++         +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVTPTK-AYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +   A + ++    L+ W   +     +        +R     R    +D      + 
Sbjct: 124 -TSKVIANREVSVFSHLWNW--ARSKGITDLPNPCGGIRRNKATGRDVYVDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDIRQAQAQLGHASVTMTEHYVRK 329


>gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120]
          Length = 335

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 88/323 (27%), Gaps = 45/323 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R           A+ S       K+ ++     +   L  LI  +       SL
Sbjct: 9   RNGKRVR-KQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRH-LSELIELWY------SL 60

Query: 88  AVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR--------------KHTP 130
              +    +        I    GD    ++T        E+R                 P
Sbjct: 61  YGQTLADPKRLMAKLRIICNGLGDPIASELTAGEFTKYREARLKGEVRNEDGTLMSPVKP 120

Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +      ++  +F    +   + A NP   +   K     +   T E++++     ++ 
Sbjct: 121 RTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACADS 180

Query: 190 SQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             P L       L +G R S++       +     +    K     TV +     + L  
Sbjct: 181 QSPSLLMIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPK 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
                 T                  F+    +AG+        H +R   A+     G  
Sbjct: 241 NRGKLFTPC-------------RKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGN 287

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 288 ILVLRDILGHVDIKMTMIYAHFA 310


>gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 100/408 (24%), Gaps = 71/408 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPK 57
           M    +      +    +G    Y  K   +R  +   P               T    +
Sbjct: 1   MASIEKRGNNSYRITVTNGTD--YTGKKDKKRKSITLDPGMTPKQIEKELQRQATLFEDE 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
            +          T K  I  +        L       ++   + +II   G     +I  
Sbjct: 59  VKNGTYLDTGKITFKEFIDRWVIDYAEKQLEPKKLHCYKIMLNNRIIPTLGHLKLDRIQP 118

Query: 117 KHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            H+     +               +  +  ++   +  + + A++ + +  NP   V+ P
Sbjct: 119 NHLIEFYNNLAEPGIRQDGKGDTLSEPTIQKYHRIISSILQDAMQWQLIISNPASRVKPP 178

Query: 165 KRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K + +    + +E          SE  + ++       +GLR  +      +++      
Sbjct: 179 KVRKKEAGTFDEEKTALLLETLESEQLKYKVLVLLGTVTGLRRGELVALKWENVDLKNCI 238

Query: 224 IKTQKTGTI-----------------ITVELPDGFMKLLAMT--------------PIGK 252
           I  + +                      + +P     LL                   G 
Sbjct: 239 IDVRYSAQYVPGKGVSIKEPKTKSSLRKIAIPSSVKDLLKSYKQFQSQERLESGDQWKGD 298

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-------------------AHGVRKFS 293
           +  F   + + M+    + WFK                               H +R  +
Sbjct: 299 DWVFTQLNGEIMHPDTPTKWFKKFLEDYNEKVHSDKNIPKNQKEKYLLPVIKFHCLRHTA 358

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI-RLGIKNSRRI 339
           AT+    G     + +  G          Y        +        I
Sbjct: 359 ATLLIHKGLNVRAVSSRLGHANTSTTMNIYAHALQTADKQATDMMESI 406


>gi|255308336|ref|ZP_05352507.1| phage integrase [Clostridium difficile ATCC 43255]
          Length = 372

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 104/365 (28%), Gaps = 39/365 (10%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R GK   Y         +I+                L                 TTL 
Sbjct: 9   RKRGGKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFITPSKTTLV 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
               +Y  S      +  + ++ +S+    I     D     +    ++  ++       
Sbjct: 69  ERCYKYIMSNE-KKWSPYTTVNRKSWVKNYIEPFFKDTILIDVNPSLLQIFIDKNFDGSA 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+A      +  + K A R + ++ NPC  V+ P +           +         + 
Sbjct: 128 PSTAKVRYNFLSSVLKEAYRLKEISENPCDFVKLPAQNVTYEIEIYNREETLLLIEKLKD 187

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTII 233
           S   +    +L  GLR  +        +  +   I   +                  +  
Sbjct: 188 SLIEIPILLMLLLGLRIGEVAGLRWSDVDLDNSIININQILIYANSKITFKEPKTAKSKR 247

Query: 234 TVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKA 280
           T+ +P   ++ L +  + +                 +N + +    T  S  F     + 
Sbjct: 248 TLSVPKELIEKLKIEKLKQNKIKLQGTLENENNLVCLNTNLKPWIPTALSKTFHNFIKRN 307

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
            + N   H +R  +A++    G     +    G   +      Y+   +   +  + S  
Sbjct: 308 NLRNIRVHDLRHTNASLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLEE--MDKEASDN 365

Query: 339 ISSVV 343
           +S ++
Sbjct: 366 LSKLL 370


>gi|322412565|gb|EFY03473.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 355

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/350 (10%), Positives = 92/350 (26%), Gaps = 27/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++     +    +R   G++         T   A ++A                   T+
Sbjct: 4   YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +        +   +  ++   F  I    G    + IT    +  +       +
Sbjct: 62  LDYNKRWADIYKKPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGTKVA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184
             +  +F   ++   K A+R   +  N          +  K ++E     ++       +
Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLTFIKVA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229
                    L    +  +GLR ++      + +                       T+  
Sbjct: 182 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFENGYIDINKTFDYSISQNFGPTKNE 241

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +I  V +    +++L                    +   +   K      G N + H +
Sbjct: 242 QSIRKVPIDKNSLEILRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
           R   A+     G     +    G + ++   + Y    + ++    +  +
Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHLVK 349


>gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31]
 gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31]
 gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31]
 gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31]
 gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31]
 gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31]
          Length = 330

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 82/305 (26%), Gaps = 37/305 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIR 120
           L  LI  +           + ++   +   F  ++R +G              I    + 
Sbjct: 6   LPALIQRFFTDRLCVQMEASPHTVAGYRDTFRLLLRYAGARCGKPPVKLTVEDIDADLVA 65

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +      R ++  S    L ++R  F++    +   +  C  +     K    R  T 
Sbjct: 66  DFLAHTETARGNSARSRNTRLAAIRSFFRYVAMSDPTWLLQCQRILAMPNKRYVKRTVTF 125

Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227
            D  +              G +        + +GLR S+     +  +   N        
Sbjct: 126 LDADEMAALLAAPDRTTWAGRRDHALLLLAIQTGLRASELVGLKLGDVVLGNGAHIRCMG 185

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN 283
           K        L     KLL       +            ++++        +     A   
Sbjct: 186 KGRKERATPLRRETAKLLGAWIGNDKDENRPLFPSIRGERLSRDALEHLVRKHCLSASRT 245

Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                    + H +R  +A      G     +    G + V+  + Y      +R+  K 
Sbjct: 246 CPSIGTKRVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHA--DMRMKEKA 303

Query: 336 SRRIS 340
             R++
Sbjct: 304 LARVA 308


>gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205]
 gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205]
          Length = 359

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 102/335 (30%), Gaps = 20/335 (5%)

Query: 14  ERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R R     Y   +    G+R         T   A  +A       +   N    +  TL
Sbjct: 4   YRKRSNGWEYRINYYDSTGKRKPKTKGGFRTKSEAIKAA--AEMELKLQDNVNVDEDITL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                ++       +++  +  ++ +   +I    GD   + IT    +  + S   T +
Sbjct: 62  YDYFKQWCGVYKKPTVSKITYKAYINSQRKIELFFGDKKLKSITATEYQRVLNSYAKTHA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  +F   ++   + AV + Y+  N C   +   +           ++++++    E 
Sbjct: 122 QDTVERFNVHVKACIEMAVHEGYIKRNFCKFAKINAKNKGRDIETKFLEVEEYERLIYET 181

Query: 190 SQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242
           S+        A   +  +G+R ++     V  ++ +   +   KT      T  +P    
Sbjct: 182 SKHPEYASYAALYIISKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTK 241

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQF------SIWFKAKATKAGVNKSAHGVRKFSATI 296
             +   P+  E     +     +  +       +   K      G     H +R   A+ 
Sbjct: 242 SSIREIPLDDEFINFIDQLPPTDDGRLLPSLSNNAVNKTLRKIVGREVRVHSLRHTYASY 301

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                     +    G + ++   E Y       +
Sbjct: 302 LIAHDIDLISVSQVLGHENLNITLEVYAHQLQEQK 336


>gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B]
          Length = 419

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 102/357 (28%), Gaps = 32/357 (8%)

Query: 13  KERTRHGKII-----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-TPKREYINSPRK 66
           K R +H +       Y +     ++ R    +                   RE     + 
Sbjct: 59  KYRIKHIRKREVLNLYIWLHPRNQQERTQNKNTLALAEKIRFEREQEFLEDREGYRLKKD 118

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----------YRKITT 116
                   I  +RK       +   R ++++ +++ +R                   IT 
Sbjct: 119 GEN---DFIKYFRKHWENELYSKPVRTTYKTSYNRFMRFLEATPRFQRYTSFLRMELITP 175

Query: 117 KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGI 171
           + + S  +  K       A +     R +   A+ +  +  NPC             + I
Sbjct: 176 EMVTSFTDYLKKVAKGEGAHKSYYMFRTVILHAIEEGLMKKNPCKGIVIHRDVNTLKKEI 235

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +        +  E +  + AF F  ++G+R  D+      ++  +   ++  +  T
Sbjct: 236 LTMDEIKRLAATHYEGEDTALQRAFLFCCFTGIRWCDTVSLTYANVDFSAKILRFNQQKT 295

Query: 232 I----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285
                 +         LL +     +             T      +     AG+NK+  
Sbjct: 296 EGRSAHSGVTIPLSPTLLKLIGNPIQHTSEKIFNITCYRTTAITRLQKWVKAAGINKTIT 355

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            H  R   A     AGA    + +  G  ++   E Y    D+ +        +  +
Sbjct: 356 WHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHVIDQQK--QDAINSLGDL 410


>gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 341

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 103/335 (30%), Gaps = 39/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V   +                 +  P   ES  + A    L     K E   + R
Sbjct: 12  KLPPKVYPNK--------------YSYVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 57

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 58  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG             +
Sbjct: 178 APV---PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296
           +       +      N    +     F+  +      AG       + + H +       
Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNLAGQISGIATDFTFHDL------- 287

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 288 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 321


>gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6]
 gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
          Length = 382

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|209917752|ref|YP_002291836.1| phage integrase [Escherichia coli SE11]
 gi|209911011|dbj|BAG76085.1| phage integrase [Escherichia coli SE11]
          Length = 387

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 111/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+R +           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRTKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 320

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 77/264 (29%), Gaps = 15/264 (5%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  +        ++A N++    +    + ++        ++   I+S   ++     + 
Sbjct: 50  VELFLNHLVNQQNVAPNTQAQALNALSFLFKEVIKKPLS-LSLGFIKSKRATKLPVVLTQ 108

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQP 192
                 +   FK    + Y+             +   +R    +        W  +G + 
Sbjct: 109 ----QEINNFFKVCSAKHYLPCGLLYGSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGGKN 164

Query: 193 RLAFEFLLYSGLRCSD------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           R+    +  +    S         +  +++   +   +               G+  L +
Sbjct: 165 RVVTLAVELTPQLRSQIQLVDSYLQLDLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYLFS 224

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              +  +       +  ++  Q     K  A  A +NK  + H +R   AT    +GA  
Sbjct: 225 SHKLSIDPESKQLRRHHIDEKQLQRAVKKAAFDAHINKHVTPHTLRHSFATHLLQSGADI 284

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
             +    G   V   + YT    +
Sbjct: 285 RTVQTQLGHSDVRTTQIYTHVLQQ 308


>gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18]
 gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18]
          Length = 334

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 87/334 (26%), Gaps = 37/334 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V K   + G     F     R  R              +           ++   +    
Sbjct: 3   VYKRGDK-GVFYMNFTVDGVRVSRSTGKFTKKEAKLVEAVEKKRMMVDGALSPRERAARM 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF-------------ESYFDQIIRKSGDFDYRKITTK 117
           L               L+  ++ ++             +   ++ +   GD    KI  +
Sbjct: 62  L---------------LSTATQKTYDERWKDNKDGLKSKRLAERAMDLIGDIPLSKIDDQ 106

Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            I+     +E      ++  ++L +M+ L     +          S  R +  ++     
Sbjct: 107 MIKYLVKQLEESGVKGATINRYLATMKTLLHDHQQPWEHIKLKKESKGRIRVLSKEEELA 166

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT--G 230
               ++           P  A    +   +G R S+      + +  +   I        
Sbjct: 167 VVSLLRDTDHKSKRSYYPEAADLVEVLVDTGCRLSEILNLKYEDINWDTNLITIWVNKGD 226

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
              ++ +      +L     G      + D  +     +S   K    +       H +R
Sbjct: 227 KPRSIPMTKRVGGILLARQEGNWLKPFSIDIDQA-QKAWSWVRKRMMLEYDREFVMHSLR 285

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              AT   D G   + +    G  T+   E Y  
Sbjct: 286 HTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAH 319


>gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
 gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653]
          Length = 290

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 90/260 (34%), Gaps = 20/260 (7%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125
           + ++ E+ +       L+ N+  S+    +Q +    +        +K T  +    ++ 
Sbjct: 3   ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQ 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++  + L+S++  + +   ++ +  +P   +  PK + +     T E +    SF
Sbjct: 63  QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSF 122

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +G + +   E +  SGL+ S+     ++ +      I  +       + +    
Sbjct: 123 DFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRSG-KERVIPIGSYA 181

Query: 242 MKLLAMTPIGKETFFI-------NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKF 292
           +  L                   N   +++         K  A K   G++ + + +RK 
Sbjct: 182 VAALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLSLTPNILRKS 241

Query: 293 SATISADAGATAHELMATYG 312
            A      GA    +    G
Sbjct: 242 FAQHMLQNGADLKTVQEMLG 261


>gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 301

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 23/276 (8%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD---------FDYRKITTKHIRS 121
           K ++ ++  S      L   +   + S     I              F    + T  +  
Sbjct: 12  KQIVQDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTR 71

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             E+     +  P++  + L +++  F+WA     +  +P   V+    +    R  T +
Sbjct: 72  YQEASQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDK 131

Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +     +    G   + +     +L++GLR  + C      +Q    ++++ K      V
Sbjct: 132 EEDALIAAAEHGGSLRDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREV 191

Query: 236 ELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            L       L    +         F       +++        +    KA +   SAH +
Sbjct: 192 PLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDL 251

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R     + A      H L    G  + D    Y K 
Sbjct: 252 RHRFGYVMAVN-TPLHRLAQIMGHDSPDTMMIYVKA 286


>gi|300691277|ref|YP_003752272.1| hypothethical protein, phage integrase domain [Ralstonia
           solanacearum PSI07]
 gi|299078337|emb|CBJ50988.1| hypothethical protein, phage integrase domain [Ralstonia
           solanacearum PSI07]
          Length = 339

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 103/341 (30%), Gaps = 26/341 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             R G  +   R+      R           A+  +L     +  ++   + + TTL  L
Sbjct: 5   TKRGGAWLCQVRRKGFP-HRAKAFSSHADAAAWGRSLEAEMDRGVHVPDRQAESTTLADL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           +  Y         + NS  S       I R+ G +    +T K +    + +  T  P +
Sbjct: 64  LDRYLTEISPTKRSGNSDNSR---VAAITRRLGAYKLTALTPKLLAEYRDEKLRTLNPQT 120

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            I  L  +      A R+    +   +      +   G     ++         +  +  
Sbjct: 121 VIHHLALINRALTLATREWGFVLPGGVPKVVKPKLPSGRDRRVQQGELDAIVAATASAVL 180

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPI 250
                F + +G+R  +      + +  +     I   KT T  TV L    + +L     
Sbjct: 181 ADLIPFAVETGMRRGEILALDWEFIDFHRRTAYIPKTKTDTPRTVPLSTKALAILQKRQE 240

Query: 251 GKETFFINNDKQKMNA------TQFSIWFKAKATKAG--------VNKSAHGVRKFSATI 296
             E       +  +         +    ++A     G        V    H +R  + + 
Sbjct: 241 AGEGVPFAMQEDAVTTAFMRAVRRARAVYEAACAAEGKPPSGRWLVGIRLHDLRHEATSR 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             + G +  E+    G KT++  + YT     +R      R
Sbjct: 301 FFEKGLSVMEVTTITGHKTMEMLKRYTH----LRAADVALR 337


>gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
 gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69]
          Length = 350

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 85/330 (25%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  +        +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITFVRAKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQPTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|306833129|ref|ZP_07466259.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
 gi|304424703|gb|EFM27839.1| phage integrase family site-specific recombinase [Streptococcus
           bovis ATCC 700338]
          Length = 385

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 99/364 (27%), Gaps = 46/364 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
                 ++ K R      IY    G                  + + +       E    
Sbjct: 9   KKSKTGYLYKVR------IYRVIDGKRHDYFKSGFKTRREAKEHEAMIYHKKSTGELSEL 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R      + +  E+ ++         S  + + +   I+   G+    KIT    +  +
Sbjct: 63  LRAPERRFEGVFEEWFRTYQDTVERTTSVRTDDIFRLHILPTLGNIAISKITPWQCQEFI 122

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T  +  Q  +    +F +AV+ + +A NP   V  PKR+ +    +   D     
Sbjct: 123 TEKGKTFRNIKQIKSYASQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDELHEF 182

Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------I 224
                  E  +    F  L YSGLR  +        +  +                    
Sbjct: 183 LAIVKAEEPYKNYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNLGRIKGKAVEK 242

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMN 265
            T+   ++  + L      +L                               +   Q + 
Sbjct: 243 STKNRFSVRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFVDRDGKIQPLY 302

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               +   K    K  + K + HG R   AT+  + G          G  +     +TY+
Sbjct: 303 QDYINSILKRIINKHNLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYS 362

Query: 324 KGAD 327
              +
Sbjct: 363 HATE 366


>gi|222153932|ref|YP_002563109.1| phage integrase [Streptococcus uberis 0140J]
 gi|222114745|emb|CAR43892.1| phage integrase [Streptococcus uberis 0140J]
          Length = 388

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 118/387 (30%), Gaps = 55/387 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + R G  +Y         K  G+++       +         L  S  K +  +  
Sbjct: 3   ITEHKKRDGSTVYRASIYLGVDKITGKKVTTKVTGRTKKELKNNIKLAESDFKNKGGSRH 62

Query: 65  RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           +    T  + L   +  S    ++  NS+ +      + I+   GD+   K++T  I+S 
Sbjct: 63  KAISITKYEELALLWWDSYK-HTVKPNSQDNTRKLLYNHILPLFGDYKLSKLSTPLIQSI 121

Query: 123 VESRKHTPSSAIQ-------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +       +   +        + ++ + + ++ V  + +  NP   V  P+   +  R  
Sbjct: 122 INKLADRTNKGEKGSYLHYDKINALNKRILQYGVVMQAIPFNPAREVILPRNTQKSKRQK 181

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            K         +              S     ++FLL +G R +++     + +      
Sbjct: 182 VKHFENHELRQFLDYMNNLDLDRYRYSYELTLYKFLLATGCRINEALALNWEDIDLDNAI 241

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                           +   +   + +    + +L      +                + 
Sbjct: 242 IHITKTLNYKQEINSPKSKASYRDISIDSQTVNMLKAYQRMQIQEAWKLGRSEKVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N        +     AGV     HG R   A++  ++G    EL    G  T+  
Sbjct: 302 IHEYPNNRTLQTRLRTHFKNAGVPNIGFHGFRHTHASLLLNSGIPYKELQTRLGHSTISM 361

Query: 319 AE-TYTKGA-DRIRLGIKNSRRISSVV 343
               Y+  + +  +  +    +  S +
Sbjct: 362 TMDIYSHLSKENEKKAVSYFEKAISSI 388


>gi|197105650|ref|YP_002131027.1| phage integrase [Phenylobacterium zucineum HLK1]
 gi|196479070|gb|ACG78598.1| phage integrase [Phenylobacterium zucineum HLK1]
          Length = 420

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 106/356 (29%), Gaps = 37/356 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +V + +   G I  Y RK     +RLP       +  +++ L     +           
Sbjct: 2   KYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPPRALEQHVARLI----RDLVPGGTGALR 57

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            TL   +  Y  +S  + +LA +++  +     +     G       T   +     S  
Sbjct: 58  GTLAAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKTSWA 117

Query: 128 HTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFK 183
                +A   L  ++ + K  +    +  +P      V RP+   E    W+ E  +   
Sbjct: 118 KRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFEVVA 177

Query: 184 SFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
               +  +P LA    +  Y G R  D         QN  F   + K    + V      
Sbjct: 178 QAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAEDPQL 237

Query: 242 MKLLAMTPIGKETFF-------------------INNDKQKMNATQFSIWFKAKATKAGV 282
            + L  TP   E                       N   +       ++  +    +   
Sbjct: 238 TRWLERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLARLHA 297

Query: 283 NKSA-------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                      HG+R       A AG +  E  A  G  +      Y + ADR+RL
Sbjct: 298 QGRIDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRL 353


>gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae]
          Length = 313

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 84/300 (28%), Gaps = 52/300 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  +  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAAMLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313


>gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 430

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 90/291 (30%), Gaps = 24/291 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
               I+ + K A  G  +  +   + S   ++           D +  +I         +
Sbjct: 127 FDEFIAIFEKKAKKGIRSEGTLRHWRSTKRKVEAFIRFRYQRKDIEMTEIDQCFAEEFYD 186

Query: 125 SR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTK 176
                     +  +A + +   R + K  V+++ +  NP           E   +  +  
Sbjct: 187 YLTLHLDEPLSEVTAKKLVKWTRQIVKTGVKKKVIPSNPLEGFVCSGGNKEVLPLELFEV 246

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           E + + +      S+ R AF F  ++G    D      +++     + +           
Sbjct: 247 EAIHKKQIDIDRISEVRDAFIFQCFTGFAYQDMYNLSPENIVKVGRAGEKWLI-KDRGKT 305

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNK--SAH 287
                + +L +     + +  +   +  N         +++++ K  A   G+ +  + H
Sbjct: 306 EVTEMVPILPIVQDLIDKYQSHPYCRVNNRLIPVNSNFRYNVYLKELAVICGIKRPLNTH 365

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             R   A +  + G    ++    G + +   + Y +   +         +
Sbjct: 366 LARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRISANVAIAK 416


>gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 413

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 112/395 (28%), Gaps = 76/395 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    G+R  +   +    +      +     + + +++     +T+ ++   Y
Sbjct: 24  GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDTYAAGTSTINFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR----KHTPSSA 133
             +     L   +  +++  +D+ IR   G      +    +    +      +   ++ 
Sbjct: 81  ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
               T +   F+ AVR   + +N          ++P +        T E  + F  +  E
Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
                     F+FLL +G R  ++     + +     +I    +                
Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDFEKRTISINHSVVYYSREFKEHPICSF 258

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNAT 267
                       T+ + D     L M    ++                F+N      N  
Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318

Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310
             +   K                         + S H +R    +   +       + + 
Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G   ++     Y +  D  +   +  + ++  +D
Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLD 411


>gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 291

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 9/250 (3%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
             S + N+R ++E    + +   G      +    ++  +  R  + ++      +++ L
Sbjct: 31  ARSSSPNTRRNYEREARRFLAHVG-RPLAAVRMGDLQEYIAGRPGSSATTALSAAALKSL 89

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F +A    Y+  N   +V+ P  K         E             + R+    L   G
Sbjct: 90  FAFAQEAGYLRFNVGAAVKVPPIKNTLAERIMPEGDALLMIRQEPALRNRVLLTVLYGGG 149

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELPDGFMKLLAMTPIGKETFFI 257
           LR S+ C    + L     + +    G        +        ++ L    +  +  F 
Sbjct: 150 LRISEVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQALREEALADDPVFR 209

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +     ++ +      KA A +AG+    SAH +R   A+ + D GA  H + AT G  +
Sbjct: 210 SRKGGALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASHALDRGAPIHLVQATLGHAS 269

Query: 316 VDQAETYTKG 325
           V     Y   
Sbjct: 270 VATTGRYLHA 279


>gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 410

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 99/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|67920313|ref|ZP_00513833.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857797|gb|EAM53036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 322

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 86/283 (30%), Gaps = 31/283 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-------RKHTPSSAIQF 136
            L   SR +     + I      GD D   +    +R    +       +K  P +A + 
Sbjct: 36  GLGEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAPVTANKM 95

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGS-- 190
           L+++R +   A R   +A +                   R     +++       E S  
Sbjct: 96  LSALRRVLLEAYRLGLMAADDYQKAVDFPNIQAEPELRGRSLDSTEIRALLGTCGEESVM 155

Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA 246
             +       L  +G+R S+  +  ++        +  +  K G    V LP   +  + 
Sbjct: 156 DIRDAAIMVMLRGTGIRRSELVKLELRDFDEQTGEVLVRKGKRGKTRRVYLPFDAISFIQ 215

Query: 247 MTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                          +     +    +MN+       + +A  AG+   S H  R+   +
Sbjct: 216 RWLGVRGEEEVCLFCRIHRGGHLKLGQMNSDTVWRIIQKRAKMAGIESFSPHDFRRTFCS 275

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
              DAG     +    G  +      Y +  +   R  ++  +
Sbjct: 276 DLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 318


>gi|312870846|ref|ZP_07730951.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093536|gb|EFQ51875.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 3008A-a]
          Length = 329

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 77/276 (27%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  K    + R++ T  +
Sbjct: 40  ETEEETNAELTNEHFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R       + +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++      E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMHDSCDE-PRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L     G+                ++         +    K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHDRLKIGGVECRLRELGNKLNIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLRYA 313


>gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
 gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL
           N3-165]
          Length = 291

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 83/273 (30%), Gaps = 20/273 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             L+ +YR   +   L   +  +  S   + +  K    D  K+  + I S + +R  + 
Sbjct: 4   SDLLIKYRDYLYSKQLTDGTIDNNISIITRELFDKGVKIDITKVEYRKILSSMRNR-LSK 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----EDMQQFKSF 185
           ++   ++  ++  + + +  ++       S    K      +         +  + F   
Sbjct: 63  NTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITASKPKNVLYEDEILDIYKIFDME 122

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                     F+FL  +G+R ++     +         I     G    + + +  ++  
Sbjct: 123 DKTTGYQEFLFDFLYSTGIRLAEFINLNIYDFDFENRVITVVGKGNKERIVVYNESLEQT 182

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------------NKSAHGVRKF 292
            ++ +      +   ++  +          +   A V                 H +R  
Sbjct: 183 MLSYLKARQAIMKFHRKSHSYFLIDFNTGQRLKAARVYNEIIRVGDIVHRKIHPHMLRHS 242

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   + G     +    G  +V   E YTK 
Sbjct: 243 FATHLLENGCDLRYIQELLGHSSVSTTEIYTKV 275


>gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735]
 gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas
           uenonis 60-3]
 gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735]
          Length = 427

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%)

Query: 57  KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            +E      +   TL  L     EY++     +L+  +  +F+  +   +      D   
Sbjct: 95  LKERYMQQSRPMPTLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 154

Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
                +            +    +  SS    L  +  + + A+++ YV  +P     +E
Sbjct: 155 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 214

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +     + +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 215 TPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 274

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +           +   +   + + F+   +    
Sbjct: 275 GRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREFP-SNSNFNRTIQEICI 333

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y +   + ++  
Sbjct: 334 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 392

Query: 334 K-----------NSRRISSVVDSDDP 348
           +             R+   +  S  P
Sbjct: 393 EMQPLMGSEHTRVLRKALRLCPSRTP 418


>gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
 gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891]
          Length = 347

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 92/319 (28%), Gaps = 26/319 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            Y +   G+RIR           A+          + ++   +K   TL+ L+  + K  
Sbjct: 18  CYPQGRAGKRIRKR-FATKGEALAFEKFTMAEVDDKPWLG-EKKDLRTLQDLVELWYKLH 75

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----------- 131
                +      +      I+ + G+    K T K       +RK               
Sbjct: 76  GQHLKSA--EKVYPR-LCSIVEELGNPFAIKFTAKDFVHWRSTRKAKHRHIGPDTGKFIS 132

Query: 132 --SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +    L  MR +F       E+   NP  SV+        +   + ED+       ++
Sbjct: 133 APTNNLDLRYMRAVFNELTSLGEWTHPNPLASVKSIPVTESEMGFLSNEDITALFERITK 192

Query: 189 GSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             + +   L  +  L +G R S++    +  +     +    K+    TV + +     L
Sbjct: 193 SKRAKEFELVCKICLSTGARISEANNLRLPQITKYKITFIDTKSKKNRTVPITEKLYNEL 252

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                  E   +            +             ++ H  R   A+   +AG    
Sbjct: 253 IEFERTGEKDRLFKGCHH----GIAYIINQTFPDLPEGQNTHVFRHTFASRFMEAGGNIL 308

Query: 306 ELMATYGWKTVDQAETYTK 324
            L    G   +     Y+ 
Sbjct: 309 VLQKILGHSDIKMTMRYSH 327


>gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 411

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      T K        +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
              K + +    +   +++ S   E  +    F  +L++G+R  +               
Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234

Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                          L N       +      ++ +         M    ++TF I    
Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTESGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922]
 gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922]
          Length = 416

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 28/290 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWG---SLAVN-SRISFESYFDQIIRK------SGDFDYRKI 114
                T      ++           L VN +R  ++     +           D  +  +
Sbjct: 107 ESGEITFFKFYEQFLSDYEKKVNSGLRVNGTRSKYKILLKHLRNFALTKYGYSDVSFNDL 166

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T   ++      +   S A   +         L + A+ ++++A NP    +  K+  + 
Sbjct: 167 TPDFVQEFDYYLRDAQSLAHNTIWLYMIGFTTLCRLAMSRKHLAFNPFSEYKNTKKDKDR 226

Query: 171 IRPWTKEDMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 E  Q   F     +    +  F F  ++GL  SD       ++Q+     +   
Sbjct: 227 GYLLRNELEQLVTFNCEKKKDELVKDLFVFSCFTGLSYSDMKGLRNSNIQDFFDDNQWII 286

Query: 229 TGTIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK 279
                T    +  +  +    I K              +N     +  + S        K
Sbjct: 287 VRRKKTATSSNVMLLDIPKMIIEKYAGFAKDGKVFPVPSNTICNDSLKRISQLIDCLKEK 346

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                + H  R   AT+    G     L    G K +   + Y K  +  
Sbjct: 347 ---KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEK 393


>gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22]
 gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 407

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 110/379 (29%), Gaps = 65/379 (17%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            +   E+TR G      +R+  GR                   A+ S +        Y++
Sbjct: 15  KYYPCEKTRCGHNWTVRYREPGGRTARQREKTFAKKTGPDGADAFASKVEHDKGMGVYLD 74

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            P++   TL+    E+        LA  +R ++E +    ++   G      +  K    
Sbjct: 75  -PKRGDITLRAWSKEWL---GLQILAEGTRRNYEGFTRNHVVPHLGRKTLAGLVKKDFEK 130

Query: 122 GVESRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +            S+    +  +  + + AV ++ +A NP   V+ P+  +  +     
Sbjct: 131 FIADLHRNGEGMAASTINDRMKFVAAMMQAAVTEKRIAENPAAGVKVPRTSSFAVDEDEI 190

Query: 177 ED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
               +          Q RL       +GLR S++     +  + +   ++ Q +      
Sbjct: 191 PTLEEVDLVAKYISPQYRLTIYLQAAAGLRISETLAFATECRRTDFIRVRWQVSSKANRG 250

Query: 236 ELPDGFMKLLAMTPIGKETFFINND----------------------------------- 260
           +    F+ L                                                   
Sbjct: 251 DCRTRFVPLKHRAEGEYRDIPTAPFLEEEIVAHAERWDAVPVVFTDKGGRDKELEVFFAP 310

Query: 261 -----KQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELM 308
                     AT ++  FK     AG+         + HG+R F A+ +   G   HE+ 
Sbjct: 311 RERGKGTMPTATTYAYHFKKALKAAGLVRADGKPKYTPHGLRHFFASTALANGIPIHEVS 370

Query: 309 ATYGWKTVDQA-ETYTKGA 326
              G K++    + Y    
Sbjct: 371 RWLGHKSIKTTVDIYGHLV 389


>gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A]
 gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B]
          Length = 388

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/386 (12%), Positives = 115/386 (29%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+   + G  +Y            G++++          + A          K      
Sbjct: 3   ITEYTKKDGSTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKDGSTVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++  ++ +  +      ++   G++   K+T   I+  
Sbjct: 63  KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121

Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +         +  + + K+AV  + +  NP   V  P+RK +  +   
Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262
            KT      IT       ++++                         +  E  F N+  +
Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            ++A   S        +AG  + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
            Y+  + D  +           ++ S
Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387


>gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
 gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061]
          Length = 363

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 97/363 (26%), Gaps = 58/363 (15%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +   R R     Y   Y+     +R         T   A   A              +  
Sbjct: 1   MVSFRQRGKDWEYRIPYYDPVTQKRREKSKKGFRTKKEAATEAAIVQAEINGDFVR-KDD 59

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T+   I  + +         +    ++S    I +  G    + +T K     +    
Sbjct: 60  NITISSYIDLWFEKYKLTVKKSSWDSRYDSII-VIKKNLGSCRVKDVTEKTYEGFLNKIA 118

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------------IR 172
             P  A   LT++  +F   +R+         +        +                ++
Sbjct: 119 --PEYAKNTLTNIHQVFNMMIREAVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMK 176

Query: 173 PWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN----------- 219
            W KE+++ F    S   +PR    F  L+YSGLR  ++       +             
Sbjct: 177 FWEKEEIKLFLQVVSRKGRPRDLAMFLLLIYSGLRIGEAVALTWDKVDFKKSEIKVRYTL 236

Query: 220 ----------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                                 N+           I   + +     +      ++  F 
Sbjct: 237 FREKDLKSNYELLSPKTESSIRNVPVPPQVIMQLRILKNVQEQVKNDVGELYKDEDFVFA 296

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +N      A  F+        KAGV K + H +R   A++   AG    E     G  + 
Sbjct: 297 DNSGMPEPARNFNYRMATYIKKAGVTKITPHNLRHTYASLLFAAGIDLKEAQRRLGHSSS 356

Query: 317 DQA 319
              
Sbjct: 357 KTT 359


>gi|126700136|ref|YP_001089033.1| integrase [Clostridium difficile 630]
 gi|115251573|emb|CAJ69406.1| Integrase [Clostridium difficile]
          Length = 372

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 97/365 (26%), Gaps = 39/365 (10%)

Query: 15  RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K   Y         +I+                L               K  T  
Sbjct: 9   RKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFVAPKDITFV 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--VESRKHT 129
               +Y       + +  +  S +S+    I     +    ++    +++         T
Sbjct: 69  ERCYKYIDMNK-NNWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNST 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +SA    + +  + + A R   +  N C  ++ P ++          +          G
Sbjct: 128 FTSAKVRYSFLSSVIREAYRLREIQENSCDFIKLPSKEKYSTNEIYNREEVLLLIEKLLG 187

Query: 190 SQPRLAFEFLL--------YSGLRCSD--------SCRAGVQHLQNNIFSIKTQKTGTII 233
           +   +    +L         +GLR SD        +    + +    I   + +   +  
Sbjct: 188 NNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEPKTPKSKR 247

Query: 234 TVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            +  P   ++ L +                      +N +      +     F     K 
Sbjct: 248 ALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTFHNFTKKN 307

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
            + K   H +R  SAT+    G     +    G   +      Y+       +  + S  
Sbjct: 308 NLKKIRIHDLRHTSATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVL--KEMDKEASDN 365

Query: 339 ISSVV 343
           +S ++
Sbjct: 366 LSELL 370


>gi|329936187|ref|ZP_08285980.1| phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329304297|gb|EGG48177.1| phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 415

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 95/392 (24%), Gaps = 66/392 (16%)

Query: 8   PPFVTKERT--RHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P    ++    R+G   +    +    G      +P     +     A   +   R    
Sbjct: 16  PDGKVRKVKTERYGSGLRYRARYVGPDGTEKAKSFPDRQKRLADQWLAHIEADMARGQYI 75

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            PR    T +     +  +        N++ S ES          G          HIR 
Sbjct: 76  DPRAARITFQQYAERWVAT---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRD 132

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V          S A    +++R     AV   ++  NPC +        +  R      
Sbjct: 133 WVRQLQENGVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDAKRIVPWTP 192

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            + F    +   + R   +     GLR  +     V  +  +  ++   +          
Sbjct: 193 ERVFAVRAAMPERFRAMVDLGAGCGLRQGEILGVAVDAIDFDSDTLHVVQQLKLSRSKAV 252

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----------- 272
                 G +  V LP      L           I    +  +    +             
Sbjct: 253 FAPPKGGKLRDVPLPGPVADALRTHMKEFPPVEITLPWKVADGPPVTKRLIFTGPRGGHV 312

Query: 273 ---------FKAKATKAG-----VNKSA---------HGVRKFSATISADAGATAHELMA 309
                    +K     AG                   H +R F A++  DAG     L  
Sbjct: 313 WRTSLNEEVWKRALAAAGAIPVPERGRPYAESRENGMHALRHFYASVLLDAGENIKALAE 372

Query: 310 TYGWKTVD-QAETYTK----GADRIRLGIKNS 336
             G          Y        +R R  +   
Sbjct: 373 YLGHSDPGLTLRVYAHLMPSSRERTRKAVAAV 404


>gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 389

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 12/247 (4%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  +H+         TP  A + L  +  L   AV+ E    NP   V+R K  + G   
Sbjct: 136 MRVRHVMEIKAGLSATPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGSGGFHA 195

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           WT+ ++ +F   +  G+   L+   +LYSG    D+ + G  +++      + QKT    
Sbjct: 196 WTEAEIARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQKTRKNP 255

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
               +++ +     + L   P G  TF      +   AT      +    KAG+   S+H
Sbjct: 256 EGILVSIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLPLCSSH 315

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI------SS 341
           G+RK      A+AG  AHE+M+  G  T+ +A+ Y +   R  L      R+        
Sbjct: 316 GLRKAICRRIAEAGGEAHEIMSVSGHITLAEAQRYCEDFGRKGLADSAIARLPHGAKGEQ 375

Query: 342 VVDSDDP 348
            + +  P
Sbjct: 376 KLANHPP 382


>gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 260

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 85/265 (32%), Gaps = 5/265 (1%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
               +L+  +        + +           ITT  I   V S   +  +   + T ++
Sbjct: 1   MRAQALSDLTIHERIRVSNCLCEYVDATPVT-ITTDQIIEWV-SLLPSAVTKWTYFTHIK 58

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            LF W         NP L ++ P+R     RP + E ++   +      + R        
Sbjct: 59  ALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPISLEVIEHVLN-QRLYRKTRCMILLAFN 117

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
            GLR  + C+   Q        +  +  G   ++   +  ++    T      +F   + 
Sbjct: 118 CGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIPVNSALQPFFNTMPAHGWWFPCRNG 177

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             + +            +  V+  +H +R   AT    A      +      +++     
Sbjct: 178 GHVRSRSVGDTIVRTFRRYEVHMVSHQLRHTFATELLAADVDLRIVQLLMRHESIQTTAL 237

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           YT+ A   +L  + + ++   +  +
Sbjct: 238 YTRVARAQQL--EGTNKLPVFLGKE 260


>gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 400

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 68/371 (18%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ I  F    G+R  L     +        A+     + E+  +   +  TL      +
Sbjct: 20  GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            +     ++ + +     SY++ ++    G    + I T H++  +     +     +  
Sbjct: 76  TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +  +   AV  EY+  NPC+ VE PK   +  R  TKE+ ++F +F S      +
Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHINV 195

Query: 195 AFEFLLYSGLRCSDSCRAGVQH-------------------------------------- 216
              F + +G R  +      +                                       
Sbjct: 196 LK-FAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254

Query: 217 ---LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +       +  +   I   E       +       +   F  +D   +     +   
Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWRQHKEFQNLVFTCSDGSPVYYYNVNSAI 314

Query: 274 KAKATKAGV------------NK-----SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           K    K  V             K     + H +R   AT   + G     +    G  T+
Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374

Query: 317 DQ-AETYTKGA 326
               + YT  +
Sbjct: 375 AMTTDLYTHVS 385


>gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9]
 gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9]
          Length = 388

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 111/384 (28%), Gaps = 60/384 (15%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
           + + + + G  +Y            G+++           +                   
Sbjct: 3   INEIKKKDGSTVYRANIYLGVDVITGKKVTTKVTARTKKELKTKAQQAQFDFKANGSTRY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T + L   +  S    ++  N++ + +   +  ++   G+F   K+TT  I+S 
Sbjct: 63  KEVAIETYEELAISWWDSYK-NTVKANTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQSM 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +    ++ ++          +     + + ++ V  + +  NP  +V  P+   +  +  
Sbjct: 122 MNKLANSTNTGEAGAYLHYDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAK 181

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
            K         +            +       ++FLL +G R +++       +  +   
Sbjct: 182 VKHFNNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241

Query: 221 ---------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   I   K    +         +        +   F + 
Sbjct: 242 VHITKTLNYEMKLNSPKSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N+            +AGV N   HG R   A++  ++G    EL    G   +  
Sbjct: 302 IHEYPNSRTLQSRLGTHFKRAGVTNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341
               Y+       L  +N+++  S
Sbjct: 362 TMDIYSH------LSKENAKKAVS 379


>gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
 gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM
           4810]
          Length = 332

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 80/310 (25%), Gaps = 48/310 (15%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            P  E    P  +       + +Y         L+ N+  ++     + + +    D   
Sbjct: 8   DPAPEQALRPADERI-----LEQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDA 62

Query: 114 --ITTKHIRSGVESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             +  + +   ++S +              + ++  +  +         +   + +P   
Sbjct: 63  TAVDPQQLGRWLQSLRTGADGGSVLSASSAARSLAAVRGLHSFLD--AERVSSSGDPARL 120

Query: 161 VERPKRKTEGIRPWTKED----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           V  P        P                   +   +   + R   E L   G R S++ 
Sbjct: 121 VPSPALPRRLPHPLAIAQVEALIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEAT 180

Query: 211 RAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET-----------FFIN 258
              V  +     +     K      V +    ++ L                     F+ 
Sbjct: 181 GLDVDDIDAQERAAVLRGKGDKHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLG 240

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGW 313
           +   ++         +  A  A +       S H +R   AT     GA    +    G 
Sbjct: 241 SRGTRLTRQAAWQVVQRAADAAELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGH 300

Query: 314 KTVDQAETYT 323
            +V   + YT
Sbjct: 301 ASVTTTQLYT 310


>gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 290

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 12/258 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128
             LI+ +         +  +R  ++S   Q IR  G     ++  + I      +E + +
Sbjct: 11  SELITTWLLHQS----SKLTRQHYQSNIKQFIRFIG-LSLEEVKIEDINGFVRMLELKGN 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PS+    L++++ LF +A +  Y+  N  + V+ PK          + +  +     + 
Sbjct: 66  KPSTIKGKLSTVKSLFSFAYKVGYLTSNVTVLVKSPKVNKRTASMRIEHEDIRKMVDGTN 125

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLA 246
             + RL  + + + GLR S+  R        N   I  +          E     +  L 
Sbjct: 126 SKRDRLIIKMMFFLGLRVSEVLRLKWSDFYQNKVFISGKGNKERSLNLPEELFLELSELK 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
                   F      +++     +I       + G++     H  R   +  S D G   
Sbjct: 186 SEFNPTFVFTAYQKDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFRHEHSMTSLDNGCDI 245

Query: 305 HELMATYGWKTVDQAETY 322
           H L  + G  +V   E+Y
Sbjct: 246 HLLSRSLGHGSVSITESY 263


>gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608]
          Length = 407

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 101/310 (32%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                           +VE     + +    +T  G +T+        +   + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADLCGIKKRLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 390

Query: 332 GIKNSRRISS 341
             + + ++S 
Sbjct: 391 MEELAGKLSK 400


>gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 350

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 104/296 (35%), Gaps = 7/296 (2%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                A+       E       K   LK +   +  +  + SL+ +++ S    F+++  
Sbjct: 52  EKRTDAIAALAKYNENPYDISTKKIKLKDIYERWCNTTDFISLSDSTKKSHALAFNKLEN 111

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +  + K+ T  ++  ++    TP+  +Q    +  L+ +A + + V  N    ++  
Sbjct: 112 AH-NMPFSKLNTNTLQILIDETGSTPTVKLQIKKLLGNLYLYAEKYDIVTKNYSKFIDVG 170

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              ++  R     +  +        ++   +  F+LY+G R S+     ++++     ++
Sbjct: 171 DTSSKIERRIYTHEEIEKLWNNLAENKWIDSILFMLYTGFRVSEMLELKIENIDLENLTM 230

Query: 225 KTQKTGT--IITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKA-KATKA 280
              K       T+ +    + ++         + F      KM A  + + F      + 
Sbjct: 231 SGGKKTAAGKRTIPIHSKIVDIVKNRYDENYEYLFRTQKGTKMTADSYRVSFYNPIMEQL 290

Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
            +  S  H +R    +        A  L    G  T D  + YT    D ++  ++
Sbjct: 291 NLTGSGCHDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTHKTIDDLKEAVE 346


>gi|221328640|ref|YP_002533482.1| Tyrosine integrase [Salmonella phage epsilon34]
 gi|193244708|gb|ACF16647.1| Tyrosine integrase [Salmonella phage epsilon34]
          Length = 387

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 103/358 (28%), Gaps = 57/358 (15%)

Query: 17  RHGK-IIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R G+     +    G+RI+      +                + + +        T    
Sbjct: 5   RRGEIWYASYSTPGGKRIKESLGTSDKRLATELHDKRKAELWRVDRLGDF--PDVTFDDA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
              + +          S     S     +        + +T + I   V    +      
Sbjct: 63  CMRWLEEKAEKK----SLKDDRSRMAFWLAHFEGVRLKDVTEQKIYLAVNKMSNRKQLEI 118

Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                    S+  + L  M+ + + A  +++  +     ++ P 
Sbjct: 119 WKIKAAAAQKNGEPAPIYSAKPVKTSTKAKHLALMKAILR-AAERDWKWLEKAPVIKVPA 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            + + +R   KE+ ++      E    +   +F L +GLR S+      Q +        
Sbjct: 178 VRNKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRRSNIINMEWQQIDMQRRVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------F 269
            + +  K+   I V L D   K+L         +   + K+ +                 
Sbjct: 236 VNPEDSKSNRAIGVALNDTACKVLREQIGKHHKWVFVHTKEGIRPDGSKTPTIRKMRVDD 295

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              + A   +AG+ +   H +R   A+    +G     L    GW+++D    Y   A
Sbjct: 296 QRAWNAACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIDMVRRYAHLA 353


>gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus]
          Length = 209

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 14/156 (8%)

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247
           G + +   E L  +GLR S+ C  G+  +Q     +  +  G     V L    ++ +  
Sbjct: 29  GVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVAIEKVQA 88

Query: 248 T----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                          +  F+           F    K  A KAG+    S H +R   AT
Sbjct: 89  YLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKLRHSFAT 148

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              + GA    +    G   +   + YT   +  RL
Sbjct: 149 HLVERGADLRAVQQMLGHADLATTQIYTH-VNAARL 183


>gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 320

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKGQRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++    V  +Q        +  G                 I + L   
Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIHLFLESS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L                   + A        A A KAG+       HG+R  +AT +
Sbjct: 219 GHHLADRKVPLFMPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 287

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 81/280 (28%), Gaps = 18/280 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           TL    + Y  + H              Y   +           I T  I+         
Sbjct: 3   TLDEAWNSYLATRHLTPY--GYLTDMSRYRVHLQTYWHGKTLTSIKTLDIQFYTNHLFEK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P +    L  +R + + A R   +          P           +E     +   
Sbjct: 61  GLSPQTVRLCLGQLRRIMRRAHRLGLLEGQLPYFEMPPADSVRYRYLEPEEATSLLQVLR 120

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +            L +G+R S+       ++     +I   KT  +    +P     L  
Sbjct: 121 NLSQLWHDIALLSLNTGMRASEIFSLRGANINVPQENIILHKTKNLKQRIVPLNSPSLNI 180

Query: 247 MTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKS---------AHGVRKFSA 294
           +    ++   +   +++ +  QF   S  F+     +G+N+           H +R   A
Sbjct: 181 VKKYHRKNAELLFHQEESSNKQFVKISKKFRRAVEISGLNEGIIDNRYRVVFHTLRHTFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
           +     G +   +    G  +V   E Y   A D+ R  +
Sbjct: 241 SWLVQRGVSLQVVSNLLGHSSVRVTERYAHLAPDQGRNAL 280


>gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 325

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 47/302 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           LI  YR+       A  +  ++E +  + +R       R++ +  + S +       + +
Sbjct: 12  LIQRYREELQTRHYARRTVKTYELWLRRFLRFHNLRHPREMGSAEVNSFLTHLAVDLQVS 71

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-------------------------- 163
           PS+  Q L ++  L++  + ++        +  R                          
Sbjct: 72  PSTQNQALAALLFLYRELLDRDLELDGVVRARNRRRLPVVLSEAEVRAVRDHLEGDPALV 131

Query: 164 ----------PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                                   + ++      +G + RL                   
Sbjct: 132 VGLLYGSGLRLMEALRLRVKDLDFERRELSVRDGKGGKDRLTLLPQSLVADLKHHLLGVR 191

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-----KQKMNATQ 268
             H  +             +  + P+   +        +E  + +       +  ++ + 
Sbjct: 192 RLHRLDLAAGWGQVLMPHALARKYPNAAREWAWQWVFPQEHRWHDRTSGTQGRHHLDPSL 251

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K   T AGV+K  S H  R   AT   + G     +    G K V     YT   
Sbjct: 252 VQKAVKRAVTAAGVSKAASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHVL 311

Query: 327 DR 328
           +R
Sbjct: 312 NR 313


>gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
 gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter
           curvus 525.92]
          Length = 267

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 87/278 (31%), Gaps = 21/278 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +L+ N+  ++     Q +       Y  ++ +++++        ++P +
Sbjct: 2   MTQFKTYLTNKNLSQNTIFAYLFALKQFLD-----RYDDVSRQNLQAYKLYLIENNSPKT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    +   + +       +  +   +       +        K       + 
Sbjct: 57  VNLRLRAINCYLQSIKKPKLQLSFVKVQQKSFLQNVISKADYEYFKACLLKDGHK---KW 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTP 249
                FL  +G+R S+  +   +H+    F I ++                  K L    
Sbjct: 114 YFVVRFLAATGVRVSELVKFKAEHVVLGYFDIYSKGAKMRRIYIPKSLQASAKKWLDEIG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           I     F+N   + +     +   K  A   G+++S    H  R   A     +      
Sbjct: 174 IKSGFIFLNRFSKPITPRGIASELKKFARIYGLDQSVIYPHSFRHLFAKNFLASCNDIAF 233

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           L    G  ++     Y +     R   +    I SV+D
Sbjct: 234 LADLMGHTSIQTTRIYLR-----RTAAEQRDLIDSVID 266


>gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 304

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 88/285 (30%), Gaps = 29/285 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR 126
            T + L+  +       +L+  +   ++   +++I      +     +TT   R  V S 
Sbjct: 1   MTNQELVKTFLMYQETKNLSKRTIEWYQFTLNKLIDYCKENNISIESMTTPQARQYVFSL 60

Query: 127 KHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + + S             ++ S++++F +    EY+  NP   V++ K     I  +  E
Sbjct: 61  QKSISRTGKKYADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVE 120

Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232
           ++++  + +        +  L  + L  +G+R S++    +  +  +        K    
Sbjct: 121 EVKRMLNQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKE 180

Query: 233 ITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV 282
             V       + +      +             F   +   +             TKA +
Sbjct: 181 RMVPFGRSIKREILKYLPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKI 240

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                SAH  R   A      G     L    G   +     Y  
Sbjct: 241 KGKRLSAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVH 285


>gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 320

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 80/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G         +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLENNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++ +  V  +Q        +  G                 I + L   
Sbjct: 159 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L                   ++A       +A A KAG+       HG+R  +AT +
Sbjct: 219 GHHLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            D  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LDHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|260583149|ref|ZP_05850930.1| prophage integrase [Haemophilus influenzae NT127]
 gi|260093861|gb|EEW77768.1| prophage integrase [Haemophilus influenzae NT127]
          Length = 341

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 103/324 (31%), Gaps = 22/324 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + ++G     F    G R+R      +          L     + + +N  +K   T++
Sbjct: 4   RKNKNGVWQIDFTTPSGERVRCSSKTTDKKLAQHLHDKLKHEAWQVDQLN--KKPEKTVE 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
             +    K A          ++   +      + G+     +T++ I++          +
Sbjct: 62  QALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIPTHVVRTGK 117

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  ++ +S+      A +  ++ + P ++      + +    W  E   +     
Sbjct: 118 ILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAK---NSEPKKRIRWITEKEAERLLDS 174

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
              +  +   +F L +G R ++        +                    ++ L D  +
Sbjct: 175 LNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRSLPLSDDAI 234

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADA 300
            L+      + + ++ +          S   FK    +A +     H +R   A+     
Sbjct: 235 NLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHTWASWHIQR 294

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW+T++  + Y  
Sbjct: 295 GTPLMVLKELGGWETIEMVQKYAH 318


>gi|291295791|ref|YP_003507189.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290470750|gb|ADD28169.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 374

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 102/348 (29%), Gaps = 31/348 (8%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G+   +   G+G   +             ++        R      +     L   + 
Sbjct: 15  KDGRWAAFVTIGYGPDGKQRKRWVYGRTRREVAEALARLLPRAGYGLIQPTRLRLGEWLE 74

Query: 77  EYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAI 134
            +         L  ++  ++ +Y  Q+++        +++   IR+        +PS+  
Sbjct: 75  RWADERARSKGLRPSTVQNYRNY-QQLLKPLAATPLTRLSPLAIRARFAELAELSPSTRR 133

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +R   + AVR   +  NP  +V+ P   T         +        ++G +   
Sbjct: 134 HLYQFLRAALRDAVRVGLLEANPMDAVDPPTGGTVRPPRAWNREQVSAFLAAAQGHRLYP 193

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--------------------- 233
            F  +L +GLR  ++     Q  Q     I+   T                         
Sbjct: 194 MFYVMLTTGLRIGEAMALRWQDWQGEKLWIRHTLTKQRTLGPTKTLGSSAPIYLDLATQT 253

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
                       +  A   +  +  F +     ++       F+A   +A V +   HG+
Sbjct: 254 ILSEHRTRQAEERATAKRWLDHDLIFPSEVGTPLSYRNVMRTFQALTEQAKVPRIGLHGL 313

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLGIK 334
           R    +++  AG +  ++      K        Y      DR +  + 
Sbjct: 314 RHTYTSMALQAGLSPKQVADRLRHKDPALTLRIYQHLQEEDRRQAALN 361


>gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
 gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4196]
          Length = 359

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V                 +   +  P   ES  + A    L     K E   + R
Sbjct: 12  KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H +       
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKMSGILTDFTFHDL------- 286

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 410

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 99/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDFAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
 gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium
           perfringens CPE str. F4969]
          Length = 363

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 89/345 (25%), Gaps = 33/345 (9%)

Query: 26  RKGHGRRIRLPYPHESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           + G  +                A               +    +  T+  +   Y +   
Sbjct: 26  KTGKWKEKSKQGFKTKKLAKLGADKLLTQLKEELERNKDIVGDENVTVGEMKKVYLEHIQ 85

Query: 84  -WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139
            + +   N+  S  +          D    +++   I+  ++    RK +P++  + +T+
Sbjct: 86  TYRTF--NTYKSTRAALSNF--DLDDTKLTELSIIDIQKCIDKLTARKLSPTTVKRRVTA 141

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            R + K+A  Q  + I     +  P++K   ++       E     K    +        
Sbjct: 142 FRTMLKFAHSQYGLPIPNLELLVLPEKKDLTSKRRAMDKHEINFLLKHMKMKHYNYYRVC 201

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITVELPD 239
                +G+R  +        +      I   K                       + +  
Sbjct: 202 VVAANTGMRLGEVLGLTWDCVDWENAIITVNKQWKELDKGVFGFGELKSKNSYRKIPVTR 261

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
            F+  L       +    N      +          K  +   + S H  R   AT    
Sbjct: 262 SFLDTLREIKSINKGSLDNRVIDNFDNYLSLCVNINKCIRRNYDISMHDFRHSFATRLIH 321

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            G          G         Y+   D     ++ ++++    D
Sbjct: 322 EGLDFKTTAKILGHDVEQTIRVYSHVTDE---MMEKAKKVIGEFD 363


>gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 341

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 89/312 (28%), Gaps = 41/312 (13%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITT 116
           KP+   + +++Y  +      + + N+  ++   F  ++R +               +  
Sbjct: 2   KPSDFAYALTKYLSAYLPGQCNASENTVRAYRDTFKLLLRFADTQRGICPERLTLADVDK 61

Query: 117 KHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSVERPKRKTE 169
             +   +        +  S+    L  +   F++   +     +     LS+   +    
Sbjct: 62  SFVEGFLSWLETVQGNAVSTRNHRLAGIHAFFRYLQSEKPDMMLQCQQVLSIPVKRTVKP 121

Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +   T + ++   +        G +       L  +G R S+      + L+     + 
Sbjct: 122 TVNYLTVDAVKTILAMPDTSTVYGMRDLALLGLLYDTGARVSELIELRPKDLRLAAPPVV 181

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFK 274
               K        L       L                   F+ ++ +K+     +    
Sbjct: 182 TLFGKGRKSRQCPLSSEMTGHLVKYLSAWGLDAPAKSDHPLFVGHNAEKLTRAGVAYILS 241

Query: 275 AKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
             A+ A            S H +R   A     AG     +    G  +V   E Y +  
Sbjct: 242 KYASAAREKDASIIPTIVSPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARAD 301

Query: 326 ADRIRLGIKNSR 337
           ++  R  ++ + 
Sbjct: 302 SEMKRAALQKAA 313


>gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 506

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 101/343 (29%), Gaps = 55/343 (16%)

Query: 47  YMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103
           Y   L           +P     +      + E+ +      +   +  S+ S   Q II
Sbjct: 149 YAIELGWIESNPAKGINPATDEVSVLFVDFLLEWLEMMRTR-VRETTYASYNSGIRQSII 207

Query: 104 RKSGDFDYR----KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
               D        +   K+++   +    +  +P+S ++   ++R   + A     +  N
Sbjct: 208 PYFMDKKLTLTDIEENPKYLQDFYQHELSKGLSPNSVLRRHANIRKALQHAFHLGLIKSN 267

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   +ERPK++      +T E++ +     ++G    L      Y GLR S+        
Sbjct: 268 PADRIERPKKQDYTASYYTDEELAK-LFKAAKGDPLELPIVLAAYYGLRRSEIIGLRWDA 326

Query: 217 LQNNIFSIKTQKTG-------------------------TIITVELPDGFMKLL------ 245
           +  N    K                              +  T+ L      LL      
Sbjct: 327 IDFNPDDPKITIQFTVTEVNFGDGQGNVIIEKEGTKSKASKRTLPLVKPIADLLLQKKKD 386

Query: 246 ----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                            +   +N   ++M     S  F     K G+ K   H +R   A
Sbjct: 387 IENNRRLCGSCYNDKYLDFVHVNEIGERMKPNYISQHFALLLEKHGLKKIRFHDLRHSCA 446

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336
           ++    G +  ++    G   +      YT      ++   N+
Sbjct: 447 SLLYANGVSLKQIQEWLGHSDISTTANIYTHLDYNSKIATANA 489


>gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489]
 gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489]
          Length = 410

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  L       K        +  ++ +      K    +AG+NK  S H  R   AT 
Sbjct: 307 FKWQWLFPQKNRWKNPQTGEEGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATH 366

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G     +    G   V     YT   +R
Sbjct: 367 LLENGYDIRTIQELLGHSDVSTTMIYTHVLNR 398


>gi|293371862|ref|ZP_06618267.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633168|gb|EFF51744.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 385

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 95/317 (29%), Gaps = 24/317 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107
            +   +E +    K  TTL   + E+     +     ++ +S  ++      +    G  
Sbjct: 67  EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIRKNLAEFIGEK 126

Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D  + ++T   I        + +  +  +   +++  + + + A  +         
Sbjct: 127 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 186

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                  K    +  +  D  + +       +PRL+    L+     + +       +  
Sbjct: 187 HYRVGTPKVTTPKALSMSDFIKIRDVELPEDKPRLSVSRDLFLFACYAGTAFIDTVSITK 246

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWF 273
               +       ++      G +  + + P   E      D  +          +  I  
Sbjct: 247 ANVKVLEDGDKWLVYNRKKTGTLARVKLLPEALELMAKYEDGARDTLFPLLNTNRVRIDL 306

Query: 274 KAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 A  +K+   H  R   A++   +AG     +    G K V   + Y +   + +
Sbjct: 307 ITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-QKK 365

Query: 331 LGIKNSRRISSVVDSDD 347
           L  ++  +  +  + D 
Sbjct: 366 L-FEDMDKFIAATEKDF 381


>gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565]
 gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565]
          Length = 391

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 18/272 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           K  +  Y++     SL  +++ +  S  + +     +  +  +T + + S     +    
Sbjct: 106 KSFLDFYKEELATSSLKESTKHNHLSTLELLQAFKKEIFFTDLTFEFVSSFDSYLQSRGY 165

Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      ++            R K         + E++ + +    
Sbjct: 166 HLNTIAKHMKHLKRYVNIAINKEYMDIQKYAFRKYRIKSVEGRHTHLSPEELHKLEEVQL 225

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                +L     AF F  Y+GLR SD      +++               +         
Sbjct: 226 TEKFAKLQKPKDAFLFCCYAGLRYSDFTHLTSENIIEFHKEF--WLIYKSVKTGTEVRLP 283

Query: 243 KLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
             L         + +    +N+  +  + +  +      A  AG+  + S H  R  +AT
Sbjct: 284 LYLLFEGKGIHILHRYKNDLNSFFKLKDNSNLNKELNVLAKLAGISKHISFHTARHTNAT 343

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    GA    +    G K+V   + Y    D
Sbjct: 344 LLIYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|170729640|ref|YP_001775073.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167964433|gb|ACA11443.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A +++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-ARSTQQMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|34335022|gb|AAQ64997.1| unknown [synthetic construct]
 gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 341

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 93/342 (27%), Gaps = 47/342 (13%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T  +  +GK +   Y     G+R+R           A+ +       K+ ++   +   
Sbjct: 1   MTIRKQPNGKWLCECYPSGRDGKRVR-KQFATKGEAIAFENFTMDEVNKKPWLG-EKDDR 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125
             L  +I ++       SL   +    +    +   I    GD    ++T        E+
Sbjct: 59  RQLSEVIKQW------HSLYGQTLADPKRLMSKLSIICHGLGDPIASELTAGDFTKYREA 112

Query: 126 R--------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           R                 P +      ++  +F    +  + +    L+     +  EG 
Sbjct: 113 RLKGEVRSEDGALMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGE 172

Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +   D  +        SQ     +  +  L +G R S++       +     +    K
Sbjct: 173 LAFLAPDEIKRLLDACADSQSPSLLMITKICLSTGARWSEAENLQGHQVSKYRITYTKTK 232

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                TV +       +        T                  F+    +AG+      
Sbjct: 233 GKKNRTVPISQDLYDEIPRNRGKLFTPC-------------RKAFERAIKRAGIELPEGQ 279

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             H +R   A+     G     L    G   +     Y   A
Sbjct: 280 CTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFA 321


>gi|71274688|ref|ZP_00650976.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71276271|ref|ZP_00652549.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71900963|ref|ZP_00683076.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71902016|ref|ZP_00684061.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|170730075|ref|YP_001775508.1| phage-related integrase [Xylella fastidiosa M12]
 gi|71162879|gb|EAO12603.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71164420|gb|EAO14134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Dixon]
 gi|71728216|gb|EAO30402.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|71729268|gb|EAO31386.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella
           fastidiosa Ann-1]
 gi|167964868|gb|ACA11878.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVTMTEHYVRK 329


>gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 382

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKETSKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 188 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
 gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7]
          Length = 295

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 18/267 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG---VESRKH 128
           +  E+            +   + +   Q IR       D   I +K I      +  R  
Sbjct: 28  IAQEFIIKKIDEGKRTETIKGYFNDLIQFIRYLEIKGVDLFNIDSKEIELFKGKMLRRGL 87

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P S  + LTS+    K          +     +  ++    +      +  +       
Sbjct: 88  KPKSINRKLTSINQFLK-------SIDSQVKFRKIKEQSQNFLNDVFTREEIERLIKCCS 140

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLL 245
             + +     L  +G+R S+  +  V+ +      I+ +        I+ EL     + L
Sbjct: 141 NIRDKAIISTLWKTGIRVSELLQLKVRDVGKESIDIEGKGGKHRDILISNELNKLLKEYL 200

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302
            +             +  +     +      A  A + K     H  R       AD G 
Sbjct: 201 KVRISVPGNELFTGKRGALKRGAINKIILKYAKLAKIRKEKAHPHSFRHAFCKALADNGV 260

Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329
           +   +    G K++D    YT+   + 
Sbjct: 261 SIDIIADLAGHKSLDTTRIYTRHTKKE 287


>gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
 gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41]
          Length = 390

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/395 (13%), Positives = 119/395 (30%), Gaps = 57/395 (14%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M      P  +     ++G+  Y F          G++ R       T   A   AL   
Sbjct: 1   MAKKKVSP--IKSYELKNGETRYEFPVYLGIDPLTGKQKRTMKRGFKTHKQA-ELALARI 57

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRK 113
                     + +  T + L   +       ++  ++   +   + + I+    ++   K
Sbjct: 58  KLDVANGTYKQARAETYQELYDLWIPHYE-KTVEESTFTKTVGIFRNHILPAMREYKIDK 116

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           IT    +  V+                  +  +A+++ Y+  NP   V+ P   ++ +  
Sbjct: 117 ITVDVCQKHVDKWAEKLKKFRVVKAYAAKVLDFAIKRGYMQTNPFTHVDMPIAASKKVTI 176

Query: 174 WTKEDMQQFKSFWSE-----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             +E+ + F +                 +    F  L +SG+R  ++       L     
Sbjct: 177 IEEEEAENFYTREQLIQFLACLEQENNYKAYALFRLLAFSGMRKGEALALTWNDLNFTTN 236

Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            ++  K  +                  T+++ D  M +L      ++  ++      M  
Sbjct: 237 EMRINKALSRGKNNKLYVKSTKTGFARTIKMDDKTMAILKEWKKKQKQEYLVLGFNTMQP 296

Query: 267 TQF---------------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
            Q                  W      K  +   + HG+R    ++  +AGA+  E+   
Sbjct: 297 KQLVFSNERNEFLQPTKTRKWILHVQKKYKLGTITTHGLRHTHCSLLFEAGASLKEVQDR 356

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G   V      Y       +   +  ++ +S ++
Sbjct: 357 LGHSDVQTTMNIYAHVT--KKAKEEAIQKFASYLE 389


>gi|241888620|ref|ZP_04775927.1| integrase [Gemella haemolysans ATCC 10379]
 gi|241864643|gb|EER69018.1| integrase [Gemella haemolysans ATCC 10379]
          Length = 367

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 104/355 (29%), Gaps = 39/355 (10%)

Query: 11  VTKERTRHGKIIYY----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           + +         YY             G  +RI             Y   +         
Sbjct: 2   IKEYINSKDNKKYYEVKNEYLGKNVYTGKEKRISKKGFRTKREAQNY--IVKAKNEFLNG 59

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               + +  T   +   +    H   +  +S  + ++    +I+    +     I   + 
Sbjct: 60  SVFLQSENITFGHVYKLW-DEQHKTQVKESSYHTIKTILDKRILPVFRELKIINIKLPYY 118

Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++ +    + +         +++  +  +AV+ E +  N     + PK+  E  + +  +
Sbjct: 119 QNYINEVSKTYKKGYVTLIKSTIVQILDYAVKMEIIPTNYMKLTKVPKKIEEKKKNYYTK 178

Query: 178 D---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230
                       +  S+  +AF  L ++G+R  +      + +     ++   K      
Sbjct: 179 KELLQFLKIVKENYSSETYIAFRILAFTGIRLGELRALTWKDINFKKKTLTISKNMMNIG 238

Query: 231 -------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAK 276
                          I     +   +L     +       N    K +   F+ +  +  
Sbjct: 239 SKSKVSTTKTKSSERIIFLDDETIKELKNYRELDNFISINNGIFTKNSRHYFNGMLMRIY 298

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                + + + HG R   AT+  ++  +A E+    G K +     TYT   D  
Sbjct: 299 RDFPKLKQITPHGFRHTHATLLFESDLSAKEIQNRLGHKDITTTLNTYTHITDEK 353


>gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
 gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC
           27678]
          Length = 286

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 72/264 (27%), Gaps = 9/264 (3%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            P   P T +  + ++           ++  +        +          +T       
Sbjct: 9   RPEPFPQTWEQSVDQWLTYLRAAGRMPSTIKTRRVKLWGFVHYLAGKPPENVTRADCEKW 68

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +     +  +      ++   F W V  +  + NP +    P        P    +    
Sbjct: 69  MGREGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIG--LPHVAGSKPHPRPCPETGIR 126

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELP 238
           ++      + RL        GLR S+  +   + +     +    +  +     +     
Sbjct: 127 EAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPLPQ 186

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           D  +++             ++    + A +      +   ++      H +R  +AT + 
Sbjct: 187 DLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQS---YGTHSLRHRAATQAY 243

Query: 299 DAGATAHELMATYGWKTVDQAETY 322
            A      +    G  +V   + Y
Sbjct: 244 LATHDLLAVSTLLGHSSVATTQRY 267


>gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 388

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 120/384 (31%), Gaps = 60/384 (15%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G  +Y         +  G++++      +       +       +++     
Sbjct: 3   ITEVKKKNGATVYRASVYLGVDQVTGKKVKTKVTGRTQKEVKQKAKQEKIAFQQDGFTRF 62

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           +     + + L S + +S    ++  N++ + +    + ++   G +   K+TT  I+S 
Sbjct: 63  QATSIASYQELSSLWWESYK-HTVKPNTQDNVKKLLDNHVLPLFGVYKLDKLTTPIIQSI 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           V       +           +     + + ++ V  + ++ NP   V  P+   +     
Sbjct: 122 VNKLADKTNKGEPGAYLHYDKIHALNKRILQYGVTMQAISSNPARDVVLPRNTQKAKIKK 181

Query: 175 TKEDMQQFK-----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            K    Q                         ++FLL +G R +++       +      
Sbjct: 182 VKHFENQDLKKFLDYLGGLDQAKYRNLYEATLYKFLLSTGCRINEALALSWSDIDLENAT 241

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                   +       +   +   +++    + +L    + +                + 
Sbjct: 242 ISITKTLNHLGQINSPKSKASYRDIDIDQATITMLKAYQLRQIQEAWKLGQTETVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                N        K +  +AGV     HG R   A++  ++G    EL    G  T+  
Sbjct: 302 IHDYPNNKTLGTRLKTRFKRAGVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341
               Y+       L  +N+++  S
Sbjct: 362 TMDIYSH------LSKENAKKAVS 379


>gi|19746693|ref|NP_607829.1| putative phage integrase [Streptococcus pyogenes MGAS8232]
 gi|19748916|gb|AAL98328.1| putative phage integrase [Streptococcus pyogenes MGAS8232]
          Length = 388

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 98/374 (26%), Gaps = 53/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+G   +G +         T   A    L     K E 
Sbjct: 5   KTKYP-NIFWYITLKGK-RYYIRRGYYLNGEKKEATESGIKTIQEA-RLLLAEIERKIEN 61

Query: 61  INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                 K  T+      Y  +    G  + ++ +   + F   I  K G+     I    
Sbjct: 62  NEFAYNKNLTVDEYWDIYVDNRLKAGVWSPDTYVERTNIFKNHISPKFGNKKMNAINRIE 121

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRP 173
             + + +    ++ S+         ++   AV+ + +  N    ++      +     R 
Sbjct: 122 YENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRS 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229
             +       +                  GLR S+     + ++  N       K     
Sbjct: 182 MQEFKAWDKVARKMLDDYDYAMVRITYL-GLRRSEVAGIKLGNITFNDKDCAVVKIDESR 240

Query: 230 -------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------- 262
                         +   V L     +LL           + ND+               
Sbjct: 241 TRGRKDGGGLKTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 300

Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    + +      FK       V+ + H +R F AT    AG     + A  G  
Sbjct: 301 VKPSFVGKPIGSHYIYCLFKKINKNCDVHFTPHMMRHFFATQGQIAGVPIEHMAAALGHS 360

Query: 315 TVDQAETYTKGADR 328
                  YT   D 
Sbjct: 361 NNYMTSQYTHIKDE 374


>gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 396

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 114/398 (28%), Gaps = 72/398 (18%)

Query: 10  FVTKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + K++TR     YYFR         G  R+         T     +  +     +  Y 
Sbjct: 5   RLIKKKTRG----YYFRIDVGKDPITGKRRQQSFGPFKTKTEAKKELIKIRTQVMEGTYF 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
               +     +  I+E+ ++ +    +  +  +     D  +I        + I T+ I 
Sbjct: 61  KPSAQD---FESFINEWFETVYCQDKSETTIETRRYIIDGHLIPYFKKMPIKDINTRVID 117

Query: 121 SGVESRKHTPSSAIQ-------------------FLTSMRVLFKWAVRQEYVAINPCLSV 161
           +     +       +                     + +   FK AV    + +NP  + 
Sbjct: 118 TFFAELRKNGRYPRKKTEHEEKENKDLSESYLHIIFSLLNQAFKKAVVWGLIKVNPMENA 177

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQN 219
           ++   K    +       ++   F    S+  L   F   + +G+R  +      + +  
Sbjct: 178 QKISVKNNKSKKNRAWTKEEVNIFLEAASKKGLVAPFLVGVVTGIRRGELLGLKWEDIDF 237

Query: 220 NIFSIKTQKTGTIITVEL---------------------------------PDGFMKLLA 246
              +I    T      E                                   D   + L 
Sbjct: 238 KNKTITINGTLYRRKGEGLKYKPKTKTDSSDNRVIPIPDAIVEVLRKEKALQDKTREKLG 297

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
            +   +   FIN+  + ++    +  F+       V + + HG+R  +AT+    G    
Sbjct: 298 NSYNSENFVFINDKGKPIDPDYLTRKFRETVKTLNVKQINLHGLRHTAATLLMKLGVHVK 357

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +    G   V     Y   ++   +  +++  +   +
Sbjct: 358 IVSDILGHSRVQVTLDYYSHSNEE-MMRQSTNELEQHI 394


>gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 105/395 (26%), Gaps = 76/395 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    G+R  +   +    +      +     + + +++     +T+ ++   Y
Sbjct: 24  GKYVYTYVDPEGKRRSI---YSKDIMELREREVKLMKDQLDGLDAYAAGTSTINFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
             +     L   +  +++  +D+ IR   G      +    +    +         I  L
Sbjct: 81  ISTKA--ELRETTMRNYKYMYDRFIRGGFGKKKIAAVKYSDVLQFYQHLLKEKEMQINTL 138

Query: 138 TSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            ++  +     +                     ++P +        T E  + F  +  E
Sbjct: 139 ETIHTVLHPTFQLAVRDNIIRVNPSDGVMAQIKKQPGKNHGVRHALTVEQQRAFIRYIDE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
                     F+FLL +G R  ++     + +     +I    +                
Sbjct: 199 SPTFYHWASFFKFLLGTGCRIGEAIGIRWEDIDLEKRTISINHSVVYYSREFKEHPICSF 258

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNAT 267
                       T+ + D     L M    ++                F+N      N  
Sbjct: 259 AVSLPKTEAGIRTIPMMDTVYDALQMELDDQKEHGFNETVIDGMKGFIFMNRFGNIHNPQ 318

Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310
             +   K                         + S H +R    +   +       + + 
Sbjct: 319 AVNRAIKRIYEAHNAEEVVKAAKQHREPVIIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G   ++     Y +  D  +   +  + ++  +D
Sbjct: 379 MGHANIETTMDIYAEVTDTKK--QEAIQNLAHNLD 411


>gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 423

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%)

Query: 64  PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114
            ++   T+  L  ++ +        S++  +   ++    +      D          ++
Sbjct: 112 KKQDIDTIMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRRDLKLTEL 171

Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T   I       +      P++A + + + + +     +   +  +P ++      +   
Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTVVILGQKLGVLHHDPFVNFRF-HLEPVN 230

Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               T E++ Q  +      +    R  F F  ++GL   D       ++          
Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290

Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                 +VE     + +    ++    +T+        ++  + + + K  A   G+ K 
Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            + H  R   AT+S   G     +    G   +   + Y +  ++       + + ++  
Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410


>gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio
           parahaemolyticus AQ4037]
          Length = 385

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 97/355 (27%), Gaps = 26/355 (7%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P  + P        +  + I        R       +       +           +   
Sbjct: 29  PWKKNPRLRVLVTAKSMRWIVRLGWKGKRYYESFGTYPEMKFAEFNQLAYQFIADVQSGA 88

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHI 119
             +    T++    +          + N     +++     +++   G      +T + +
Sbjct: 89  YQKGARLTVQQFFDD-----VVLPYSRNHHRDSKTFLSRSKRVMAAFGKERVTDVTRRDV 143

Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              + S    + +S  ++   +  LF  AV  E +  +P   V++        R  + ++
Sbjct: 144 ERFLNSLTDLSHASINRYHAFLSKLFSMAVEHEIIDKSPVKGVKKRVENNAKDRVLSSKE 203

Query: 179 MQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIIT 234
           M+ F            A      L +G+R  +        L +++ S      K+G    
Sbjct: 204 MESFCRNACAEPNFLHASALMLSLLTGMRIGNVISLTRSMLADDLSSALLPMTKSGKSQR 263

Query: 235 VELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286
           +   +   +L+                 N  +            +    + G      + 
Sbjct: 264 IYFSEPAKRLIRKCLKVSFNDWVFPSLNNRGEHIAYPRACMERIQQAMKQEGCLDAPFTI 323

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-----TKGADRIRLGIKNS 336
           H +R+  AT    A         + G   V+  E Y     T  A   +  +   
Sbjct: 324 HDLRRTYATQMLIATNDIRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQTVDAM 378


>gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 79/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKGLRDRAL 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++    V  +Q+       +  G                 I   L   
Sbjct: 159 MAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIHQYLESS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
                                  + A    +   A A KAG+       HG+R  +AT +
Sbjct: 219 GHHWADRKVPLFIPLRGKLTGAGITANGIYMVVAAYAKKAGIQVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1]
 gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188]
 gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1]
 gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704]
 gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1]
 gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188]
 gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 18  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 77  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 194

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 375 EKETADMMDKLIENL 389


>gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii
           DSM 18315]
          Length = 370

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 83/259 (32%), Gaps = 19/259 (7%)

Query: 93  ISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRV 142
            ++ + +    +   G   +  +T ++ +  +            K   S+A   L  ++ 
Sbjct: 111 RNWNTAYKHFEKYCCGSCTFDDLTLEYCQGFLTYLLSLTTQTKGKMMASTANNNLNKLKC 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           + + A  +  +  N    ++  K  +      T E+++       E    R A  F   +
Sbjct: 171 VLRIAYEERRIKENIAPRLKHAKEDSTRREFLTLEEVRMLAETPCEKPVIRSAALFSCLT 230

Query: 203 GLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           GLR SD  R   +++    +        T    T  +     + LA+     E       
Sbjct: 231 GLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEALALCGERGEGQVFKGL 290

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                 T   ++ K     AG+ K  + HG R   AT+   AG   + +        V  
Sbjct: 291 ----TKTILPLYLKDWIKSAGIRKHITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGT 346

Query: 319 AETYTKGA-DRIRLGIKNS 336
            + Y     D  R   +  
Sbjct: 347 TQVYVDVVSDLKRKASEQI 365


>gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  ++  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKTYLYWIKAFINFHNKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSEIS--LILNELDGRDRLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243
             SGLR S+  R  +Q +       +++  K        L     +              
Sbjct: 131 YGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190

Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277
                         LA                  + T  + +              +   
Sbjct: 191 NDNQQGIGPSLPNALARKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A          + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus
           methanolicus]
 gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus
           MGA3]
          Length = 284

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 90/269 (33%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH--- 128
           I E+ +       + N+   +       ++      D ++ K+  ++++  +   +    
Sbjct: 2   IDEFERYLLEEGKSENTIKGYIQSVSGFLKWFSESKDVEFTKLHRENVKEYISFLRTVKN 61

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFK 183
             P +    L ++    ++ V             +  K + +            +  +  
Sbjct: 62  AKPKTINTKLNALVKFNEFLVETNVQQDMVLTKKDYMKAQQQYASLAKVKLKDVEKFRQL 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
              S   +       L Y+GLR S++    +Q     +   ++++ K      V + D  
Sbjct: 122 VLDSGNKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRSGKGDKFRVVFMNDKV 181

Query: 242 MKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
              L           I  +  F++N  Q +N T  +  FK  +   G + + H +R F  
Sbjct: 182 KAALQSWLKERKEKGIEHDFLFVSNRNQPLNRTTINKLFKEYSEPIGKDITPHDLRHFFC 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           + +   G + HE+    G   +     YT
Sbjct: 242 SHAISRGLSVHEVANQAGHSNIHTTLLYT 270


>gi|315165597|gb|EFU09614.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 376

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 112/355 (31%), Gaps = 41/355 (11%)

Query: 14  ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++ + G +    ++   GR         ST   A ++A        +  +    +     
Sbjct: 5   KKLKSGWQFRVSYKDKDGRYKTKSVNGFSTKKEAQLAASEIEARYSKGYSLKEGEKL-FH 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
                + +    G L+ ++        D   +   D   +++T +  +  +     T ++
Sbjct: 64  EYFRNWFEVYRKGKLSQDNDGDIRRAVDFSEKYFPDTKLKELTRQEYQKALNDYGETHAT 123

Query: 133 A--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188
           A   +  T MR   K A+ +  +  NP   V+   +K          + Q+      E  
Sbjct: 124 ASVKKHHTYMRAALKDALEEGIIHRNPTYRVQAIGKKNPKHEELKYLNYQESIHLVHEIL 183

Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                    R    F + +G R S+        +     ++K  KT              
Sbjct: 184 EGIKPTYTSRFIILFGIATGCRFSEIIGMTWDCIDFKNKTVKVNKTWDYKYTNTFSNTKN 243

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKA 275
             +   + + D  + LL    + ++ +++             N++ + ++ T  +   + 
Sbjct: 244 YQSKRIITIDDDTLDLLKKLQLHQKEYYLKSGLRNENNLVFLNDNMELVSNTAVNKVLRK 303

Query: 276 KATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              K      + HG+R   A+I    G     +    G K +    +TY    D 
Sbjct: 304 FCRKICTKELTCHGLRHTHASIMLYKGINIKYVSRRLGHKDIVTTLQTYQHILDE 358


>gi|314937138|ref|ZP_07844485.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655757|gb|EFS19502.1| toxin-antitoxin system, toxin component, PIN family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 378

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 112/368 (30%), Gaps = 52/368 (14%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + K + + G   Y F             +R                + L      + ++N
Sbjct: 2   IKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQSKGFLN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           +     TT K +   + +      +  ++ +   + F  +I+++  +   + ITT + + 
Sbjct: 62  NDI---TTFKQVYELWLEQYKCT-VRESTFVRVSNMFKLKILKEFDNMPIQSITTPYCQK 117

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKE 177
            +                   +F++AV  + +  NP    + PKR        +  ++ +
Sbjct: 118 VINYWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSD 177

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +++QF     +       F  L ++G+R  +      + +                    
Sbjct: 178 ELKQFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSK 237

Query: 222 -FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----------- 269
                 +   +I  + + D  + +L    + +    + +     N +Q            
Sbjct: 238 EIIQPPKTHSSIRVISIDDRTISILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRL 297

Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                +        K    K   HG R    ++  +AG +  E+    G   ++     Y
Sbjct: 298 QVQHPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVY 357

Query: 323 TKGADRIR 330
               ++ R
Sbjct: 358 AHITEKQR 365


>gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 323

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 88/274 (32%), Gaps = 22/274 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE-- 124
            + L+  +       +L+  +   ++    Q+     +     +   IT++ I++     
Sbjct: 25  FEDLLQSFILDCKSKNLSPLTLRFYQDSIQQMKVAFQEQQVPLNIYAITSRQIKNHFVAY 84

Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179
              +  + ++    + +++   K+   + ++  N    +   K     I+ +TKE +   
Sbjct: 85  LIEQGKSDNTVNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL 144

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +Q       G +       L  +G+R S+ C   +  L      I+  K        +P
Sbjct: 145 LEQPDRKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVP 204

Query: 239 DGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288
                   +               F+N + ++++        +     A   GV  S H 
Sbjct: 205 FQQTSAKVVRRYLDIRGDLETDALFVNINNKQISTRALQEKMQVYGIAACIKGVRVSPHT 264

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            R   A      G     L    G  T+D  + Y
Sbjct: 265 FRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYY 298


>gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 87/310 (28%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               +      ++   TL  L  ++          S +  +   +               
Sbjct: 92  LERIKSEYLGKKEDIDTLLQLFDKHNADIARQVGISASSATLQKYNVCERHFREFLQRNY 151

Query: 107 --GDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   IR      +      P++A + + + + +     +   +  +P L+
Sbjct: 152 KRSDIKLSELTYTVIREFDIYLRTVVGQNPNTATKTMKTFKTITILGQKMGVLYHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEISIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADLCGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLGK 400


>gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 391

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 119/391 (30%), Gaps = 58/391 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRL-----PYPHESTFIPAYMSALTGST 55
           S + P  +  +  + G+   Y   +R GH     L     P   + +      +     T
Sbjct: 9   SKKSPVKIRFKAMKDGRRSIYLDCYRNGHRSYEYLKLYLVPETDDKSLRLNEAAMRKAET 68

Query: 56  PKREYINSPRKKP-----------------TTLKWLISEYRKSAHWGSLAVNSRISFESY 98
             R+ +   +K P                  ++   +S +++      +           
Sbjct: 69  ACRKKLRELKKLPAENRRLMDTQDCISNKGISILEWLSRFKEIQRSRGVHD------IHA 122

Query: 99  FDQIIRKS-----GDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVL 143
            D++         GD    +I      + VE  K            P +A     +    
Sbjct: 123 IDRLCAILSEMNCGDTKVNEIGKDFCIAFVEYLKTGYKTAKGENLKPKTAFNRQCTFVTA 182

Query: 144 FKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
              A+R+  +  NP       ER K         T +++++  +   + +  + A+ F  
Sbjct: 183 LNVAMREGIIPTNPMNLLSHHERAKASKGKRDYLTIDEVKRLIATPCKNNMIKNAYLFAC 242

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
             GLR  D  +     +  +           K+G  I + L     + +       +   
Sbjct: 243 NCGLRLGDVRKLKWGDITQDNDRWILSVIMNKSGKPIHIPLGVQARRWIPGCEDSGKHDT 302

Query: 257 INNDKQKMNATQ-FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313
            +   + +      +   K  A  AG+ KS   H  R   AT+    GA  + +    G 
Sbjct: 303 GSLVFEHLPGDSHINDILKIWAADAGIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGH 362

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +   + Y +  +R +   +    I  V D
Sbjct: 363 SQIKNTQIYAEIINRRK--DEAVNLIDKVFD 391


>gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTP 130
            ++  ++++    +    +  ++  +    I     G+ +  K+++  I   V+S    P
Sbjct: 2   EVLELWKRNLE-RTKNQRTTEAYVRHIKNFIDTVNIGEEELLKVSSAQIFKYVDSTDLGP 60

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----------RKTEGIRPWTKEDMQ 180
           +S +  L++++  FK+ +R+EY+  +    +E+            ++    +  TKE++ 
Sbjct: 61  TSLLANLSALKHFFKFLLRREYIDRDRFTDIEQAIEELREELNAKKRPTYPKALTKEEVD 120

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +   +G +    +   LYSG+R  +           +   I   +    +T      
Sbjct: 121 NIFNAV-KGKRYEKIYSLFLYSGIRLGEFENLDKSSFYLDKSGILWIRLEPHMTKRNKGR 179

Query: 241 FMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
              +LA                     +  ++      ++    + + G+  S H  R  
Sbjct: 180 LAPVLAQDRDETYRITDRILKWIENYEENFRVKRGVLQVYTDRLSKRLGIPFSVHSFRHT 239

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             T   ++G     +    G   +    ETY K + R 
Sbjct: 240 YITNLVNSGFPVEVVKEFAGHSNIKTTIETYYKFSQRR 277


>gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 427

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 85/353 (24%), Gaps = 41/353 (11%)

Query: 24  YFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           Y   G  RR+                       +           + R+ P  +  LI  
Sbjct: 55  YRHAGRQRRMTFGRWPEWSVSAARERAKEIRREIDAGADPLAQRGALREAPR-VDDLIER 113

Query: 78  YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------- 126
           Y    H   LA  +    +S     +    G     +IT+  +   +             
Sbjct: 114 YCA-QHLPKLAERNASDQKSALAKMVAPVWGRKLVTEITSTDVDKLLNKIAEGRPRPHKE 172

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRP 173
                       K TP  A +    +R +F  AV   +   NP      R +   E    
Sbjct: 173 KPNNRAKKLQPSKPTPVRANRIGEVLRKMFTLAVEWGWCEDNPAQRFHRRIETARERFLS 232

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTG 230
             + +        +E  +        + +G R  +  +A  +       +          
Sbjct: 233 KDEINSLAAALDAAEDRRAADIIRMCMLTGARLGEVRQARFEQFNLEHMSWSKPPAMTKQ 292

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGV-NKS 285
             +           +                          +   ++     + G+    
Sbjct: 293 RRVHRVPISDETASIVRQRQLVVPRGTPWLFPSDTPGQPVQEVRRFWAQIQQECGLQEVH 352

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
            H +R   A++    GA+   +    G   +     Y    D  +R G+    
Sbjct: 353 IHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTLRYAHLMDSPLRAGVDAVA 405


>gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
 gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753]
          Length = 419

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 110/385 (28%), Gaps = 62/385 (16%)

Query: 14  ERTRHGKI--IYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++   G+     Y     G+R     Y      +      +     K   I++ R    T
Sbjct: 34  KKRPDGRYAMQIYLGTVDGKRKYKTVYGGTPKEVQKKADEVRILMGKGIDISAQRD---T 90

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124
            K   + + K       + +   + E     I    GD    +I T ++++ +       
Sbjct: 91  FKEWGNHWLKIKKAIVSSAH-YKTCEQKLRIINCYIGDMPISQIKTANVQNIIFDLSSLN 149

Query: 125 SRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQ 180
                P++      + +  R +F+ A+    +  NP  SV+    +  +  R  + E+  
Sbjct: 150 RWTGKPTAKRTLVEYRSVCRQVFQLAIENRIIDYNPASSVKIVSNQLKKERRALSVEEQG 209

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
              +      + + A   ++++GLR  +        +     +I+  K+           
Sbjct: 210 WIINTPH---RAQKAAMIMMFAGLRRGEVIPLTWNDIDFEAGTIRVNKSVFKEGTRFNIK 266

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V +P   +  L + P        +     M  T +   + +      + 
Sbjct: 267 SGAKTESGNRVVNIPQILIDFLKLQPKDTILVCPDTKDVMMTETSWRRMWDSYIKDLNIK 326

Query: 284 K----------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                                  + H +R    T+   +G          G   +     
Sbjct: 327 YGDLNGKRSKYDPKGVPITIPRITPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLG 386

Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345
            YT      +       +++  +++
Sbjct: 387 IYTHLDKEHKR--NAVSKLNEYIET 409


>gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185]
 gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  S+  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242
             SGLR S+  R  VQ +       +++  K      + L                    
Sbjct: 131 YGSGLRVSECLRLRVQDIDIEQASLTVRDGKGHKDRQIILSHKCAIKLTAYINKAMEIQH 190

Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277
                         L                     T  + +              +   
Sbjct: 191 SDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 278 TKA--GVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A   +      + H  R   AT    +G+    +    G   V   + YT    +
Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2]
 gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2]
 gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2]
          Length = 390

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 14/270 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  ++ +++     SL  ++R +  S  + +     +  +  +T + + S     +    
Sbjct: 106 RSFLTFFKEEIANSSLKESTRQNHLSTLELLQEFKKEVLFTDLTFEFVSSFDNYLQSKGY 165

Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      ++            + K           E++ +F++   
Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELHKFENLQL 225

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   RL     AF F  Y+GLR SD       ++                 +E+     
Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTNLTSANIVEFHQETWIIYKSVKTGMEVRLPLY 285

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297
            L     I     + ++          S   K     AG+       S H  R  +AT+ 
Sbjct: 286 LLFEGKGIQILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDKRVSFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
              GA    +    G K+V   + Y    D
Sbjct: 346 LYNGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65]
 gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65]
          Length = 331

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 101/326 (30%), Gaps = 29/326 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++T+ G     F+   G R    +P        +  A T +   +      +   T +  
Sbjct: 4   KKTKQGNYRAQFQ-ADGTRYDKTFPTAKE--AKHWEAETKAAANKGLNEIFKNAKTPMVE 60

Query: 74  LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
           ++ ++        L  N+        +   ++    G+    K   +   +    R    
Sbjct: 61  MVHKWY------DLHGNTLRDGLHQRNALVKMCEAMGNPQAGKFKPETFLNYRRERLSAG 114

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            + +     LT ++ +F W  R   +   NP   V++  +    +R    ++++   +  
Sbjct: 115 ISENMVNHELTYLKSMFNWLTRFFEWNQENPLKHVKKVTQYDVELRYLEHDEIKTLIAAL 174

Query: 187 SEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             G  S P L     L +G+R +++ +   ++L  +   I+   T              L
Sbjct: 175 ESGRSSNPSLITRLCLSTGMRWNEANQLRRENLIPSQNKIRLNITKNS-------KARTL 227

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300
           L    +  E         ++        FK    K  +        H +R   A+     
Sbjct: 228 LITPQLMNEIVEQGEPFGRLFPQDHYNAFKLALDKTEIKLPKGQRTHVLRHTFASWYMIN 287

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     L    G  T+     Y   A
Sbjct: 288 GGRLEVLQKILGHGTILMTMKYAHLA 313


>gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124
           +  T++ +   +++      +  ++  ++     + I+   G+ D   +   +       
Sbjct: 2   RQKTIREISVAWKEYKQPY-VKQSTMAAYVLILENHILPNFGESDTLHEQAVQDFVLRKI 60

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S    L  ++++ K+ V+ E++              T+ +   +  + ++  +
Sbjct: 61  ENGLSVKSVKDILIVLKMVMKFGVKNEWMDYQEWDIKYPSSSTTKELEVLSVANHKKILN 120

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                 S   L     L +GLR  + C      +  +  +I   +T   I +        
Sbjct: 121 HIQNHFSFTGLGIYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIIDGTKKHT 180

Query: 244 LLAMTPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKA 277
            L +     +                                         +  ++    
Sbjct: 181 ELVINTPKTQNSCREIPMTKELLAMVKPLKKVVNEDFYVLTNDEYPTEPRTYRNYYGKLM 240

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
            K G+ K   HG+R   AT   +AG     +    G   +    + Y     ++ +  I 
Sbjct: 241 EKLGIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIA 300

Query: 335 NSRR 338
              +
Sbjct: 301 KVFK 304


>gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 100/312 (32%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +   +  +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKELDIHRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3]
          Length = 418

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 96/376 (25%), Gaps = 72/376 (19%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           Y FR       R    +  T               +        + TT+  +   +++  
Sbjct: 26  YQFRWTDSNHKRFC-VYAKTLDELRYKE-EQIKKDKSDGIKTEARYTTVNEVYELWKELK 83

Query: 83  HWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137
               L  N+  +++  ++  +R   G      +    I+       + R+  PS+     
Sbjct: 84  --RGLKNNTFENYKYMYETFVRHQIGSKTVSSLKKTDIKRFYNYLTDERQLKPSTIDSIH 141

Query: 138 TSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQ---QFKSFWSEG 189
           T +  +   AV  +Y+  NP  +      +    KTE  R  T+ + +    +       
Sbjct: 142 TVLHQILDMAVDDDYIRNNPSDNVLRELKQAHCFKTEKRRALTRPEQELLLSYLKNTPAA 201

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------------NNIFSI 224
                 F  L+ +GLR  +        +                                
Sbjct: 202 QYWYPIFAVLVGTGLRVGELTGLRWCDVDLENGVIDVNHTLVYYDHRTDGSKKGCYFNVN 261

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQF 269
             +       V +     + + M                    +  FIN      +    
Sbjct: 262 TPKTPAGKRKVPMLSFVKEAIIMEKERQELLDLHCTATIDGYTDFIFINRFGNPQHQGTL 321

Query: 270 SIWFKAKATKAG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +   +                      + S H +R    T   +AG     +  T G K 
Sbjct: 322 NKAIRRIIRDCNDEQFLKNENPEVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHKD 381

Query: 316 VDQA-ETYTKGADRIR 330
           +      YT     +R
Sbjct: 382 ISTTLNIYTDVTKELR 397


>gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 306

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 29/277 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPS 131
           + ++++   + +L+  +  S+ +   +      + +    R I    ++S +   + T  
Sbjct: 7   MKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQKTRG 66

Query: 132 ----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRPWTKE 177
               +    L  +++ F +   ++ ++       +             +     +     
Sbjct: 67  NNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYY 126

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233
              + ++      +      FLL +G R  +        L     ++             
Sbjct: 127 RRLKARNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVP 186

Query: 234 --------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                     E      + L   P    T          +        K     + V  S
Sbjct: 187 LTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRLS 246

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           AH  R   A     AG     L        +   E Y
Sbjct: 247 AHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283


>gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 331

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 75/289 (25%), Gaps = 34/289 (11%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
           L   +  +         +LA N++ S+      ++                  ++   +R
Sbjct: 7   LGPWVRRFLLEYLVTDRNLARNTQASYRDTLTLLLPYLSKDRKTSADRLTIDDLSPSLLR 66

Query: 121 SGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           S +      R  +  +    L ++  L ++        +     +     +       T 
Sbjct: 67  SFLAYLEKERGCSGVTRNTRLATIHSLARFIGMHSPEHVAWSAEIRAIPFRKTPKATLTY 126

Query: 177 EDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQ 227
            D        Q        G +      F+  +G R  +      G   L  ++      
Sbjct: 127 MDKPEIDALLQVPDIRTPLGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLSVRLVG 186

Query: 228 KTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
           K        L      +L          +  F+N   Q +         +    +A    
Sbjct: 187 KANKARWCPLWADVADVLRPFVAGRATHDFVFLNRLGQPLTRFGIYGLVRRVVERAAETS 246

Query: 284 -------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   S H +R   A     +G   + + A  G  ++D    Y + 
Sbjct: 247 PSLAAKQISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEV 295


>gi|302039282|ref|YP_003799604.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607346|emb|CBK43679.1| putative Phage integrase (modular protein) [Candidatus Nitrospira
           defluvii]
          Length = 410

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 30/340 (8%)

Query: 11  VTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + K RT+ G     YY  KG   R  L Y            A+  +  + E     R   
Sbjct: 5   INKRRTQKGLAFDLYYRWKGQRYRPLLGYDLSPDEAEELAIAMISTIHRGEQAPPSRSPE 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFES---YFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           +TL+  +  Y ++    +     R+         +  ++ + GD     +T +  +  + 
Sbjct: 65  STLRTFLPIYWQALRVKN-----RVDLRRPEIILETHLLPRFGDRLLDSLTPEDGQEYIA 119

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------ 175
           +R   K +P +  +    +  +   AV  E +  N    V+ P+                
Sbjct: 120 ARLDAKASPGTIQKEWGVLMRILNLAVDFEKLDRNRLKRVQLPEVARRERVATNEELSAI 179

Query: 176 -----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                K    +      + ++     +  L++GLR +         L+            
Sbjct: 180 QAEAAKRKPYKILGRVYDPAEFWRIVQVALHTGLREAKILEIDRSWLRQRDDGWWLILPP 239

Query: 231 TIITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
           +   ++     +    L+      +            +A  F   +      A V +   
Sbjct: 240 SRTRLKGTPRELPLNHLVYRALRPEVAAIEGPIFANWSADAFGHQWHRTCKAAKVQDLHF 299

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
           H +R    T   + G +     A  G  T       Y+ G
Sbjct: 300 HDLRHTFTTRLQNLGVSLEIRSALLGHSTKAIMTSQYSHG 339


>gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 327

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 14/258 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSA 133
           +  S      +  S   ++     ++   G    + I T  +R       E    +  + 
Sbjct: 56  FISSKRIEGCSEKSLKYYQKTITNMLVAVG-KQVKHIDTDDLRKYLTSYQEDNNSSRVTI 114

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 +   F W   + Y+  +P   + + K  +     +T E ++Q +       +  
Sbjct: 115 DNIRRILSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYTDEALEQMRD-DCTDLRDL 173

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252
              + L  +G+R  +        +           K      V         L      +
Sbjct: 174 ALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERIVYFDARTKLHLKQYLDSR 233

Query: 253 ETFFI------NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
                          +++      +  +    +  +     H  R+  AT++ D G    
Sbjct: 234 TDDNEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQKAHPHKFRRTLATMAIDKGMPIE 293

Query: 306 ELMATYGWKTVDQAETYT 323
           +L    G + +D    Y 
Sbjct: 294 QLQQLLGHRRIDTTLQYA 311


>gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 368

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 101/328 (30%), Gaps = 32/328 (9%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
                 R             AY+  LTG   +  Y++ PRK   T   +  ++  +    
Sbjct: 3   WVDDSGREHTRVFERRPDAQAYLDGLTGDIQRGAYVD-PRKSAETFGSVAEQWFATKGHR 61

Query: 86  SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQF-- 136
                +   + S  D + + K  +   ++I  +   +         S + T  SA +   
Sbjct: 62  --KPKTVAGYRSILDALALPKWAEVPLKQIDYQAYSTWLGGLAVDGSLRGTALSASRITQ 119

Query: 137 -LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +  + K+A R   ++ N    ++R +     +    +          ++ +     
Sbjct: 120 AHQLVGAVLKYAQRTGKISRNVAAEIKRSEDLPVPVERERRYLNHAELLQLAKATLRFET 179

Query: 196 FEFLL-YSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG 240
              +L Y GLR  ++     +H+ +    ++              T KT     V +P  
Sbjct: 180 LTLVLGYCGLRFGEAAALRRKHVGDRELLVRSSATYVTGRGIVESTTKTNRARHVPIPGP 239

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
               L           +    +  +    ++   F       G+     H +R  +A+++
Sbjct: 240 VWDRLQPELPSDPNALVFPSHRGGHLPIEEYRRAFDKGCNAVGIAGLVPHALRHTTASLA 299

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK 324
             AGA    +    G  T     + Y  
Sbjct: 300 ISAGANVKVVQRLLGHATAAMTLDRYGH 327


>gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 371

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 107/361 (29%), Gaps = 41/361 (11%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G+ +   Y     G   R+  Y        A +  +     K      P     T
Sbjct: 13  YQRKDGRWVAAAYVPVADGTYRRVSHYVRTKADAKAKLREMNDRAAKNMPAPPP---SLT 69

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           ++  + E+        +  ++ +++ES     I+ + G     +++ + +R  ++  +  
Sbjct: 70  VEAYLGEWLTHMK-QHVRRSTWVAYESNARLHIVPRIGRKKLSQLSVRDVRLMIDGLRKD 128

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +      ++R   + A R+E V  N    V   +       P +  + ++  +  
Sbjct: 129 GKGKRTVQYVHATLRAALEHAYREELVTRNVAKMVRVERPTPTPKEPLSVAEARRLLTAT 188

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
            +       +  +L  GLR S+ C     ++     ++    +                 
Sbjct: 189 RDDE-DHALWVVMLLLGLRRSEVCGLRWDNVDLENRTLSVTHSVQRVDGKLRELPTKTRR 247

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKA 280
              TV LP    + L               +            M     +  +   A + 
Sbjct: 248 STRTVPLPAMVHQALVTHRAAMMPTSQYLPEPVYVFGTKIGTPMEPRNLTRRWVTLAERQ 307

Query: 281 GVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337
           G+ +   H +R    ++    G     +M   G   ++     Y     +  R  +    
Sbjct: 308 GIRRVPLHALRHSCVSLLLAQGVHPRTVMEIVGHSAIEMTMNVYGHVNLETQRRALDELD 367

Query: 338 R 338
           R
Sbjct: 368 R 368


>gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
 gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 337

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 82/303 (27%), Gaps = 52/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AG+ K  +    R   AT    +G     +    G   V     YT
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313

Query: 324 KGA 326
              
Sbjct: 314 HVL 316


>gi|322390689|ref|ZP_08064202.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142595|gb|EFX38060.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 377

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 110/375 (29%), Gaps = 58/375 (15%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +T  + + GK       G      +RIR+      +   A    L       E       
Sbjct: 1   MTIRKAKSGKWTVDVSNGFHPVTQKRIRIIRKGLKSKKEA--LELEQHIRVVELKEKQFD 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
              T   L     +        V+     R ++E     I     + +  K+T  HI   
Sbjct: 59  FVVTTDMLFDLLEEDDLKNGRKVSYTSTQRNNYER---HIKPYFKNTNLNKLTYDHIFEF 115

Query: 123 VESRKHTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            E  K  P           ++  + L  ++ +F   +R+  +  NP  ++ +   +   I
Sbjct: 116 REYLKTKPKKQNENEVLSYNTINKILILLKKIFDTGIRKSLIDKNPVENLRKLPIRKPNI 175

Query: 172 RPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ--------------- 215
           + W+ E+  +F+    +      L F    ++G+R  +                      
Sbjct: 176 KFWSIEEFTRFRELIRDDEISYDLFFVIAFFTGMRMGEILALNWNDINLLTNTIYVTKTV 235

Query: 216 -HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQ 262
             + N  +   T+       + +     ++L    + ++               I +   
Sbjct: 236 YFVNNTSYINTTKTRSGTRNITINQKLAEMLKDWKVKQKEKLEEFTKNTEELQIIQSTPI 295

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
            +        FK    +         H +R   A++  + G     +    G  ++    
Sbjct: 296 TITKNMIDKKFKQILERDKDLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTI 355

Query: 320 ETYTKG--ADRIRLG 332
           +TY+    + +  L 
Sbjct: 356 DTYSHLYPSKQKTLA 370


>gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328]
 gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328]
          Length = 411

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      T K        +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
              K + +    +   +++ S   E  +    F  +L++G+R  +               
Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234

Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                          L N       +      ++ +         M    ++TF I    
Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 280

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 18/259 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  EY +       + N+   +     + +      D  ++T + +    E     +  +
Sbjct: 13  LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYI---DGEEVTKELVIGFKEYLVEHYAVN 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    + S+    ++A  QE+         ++ +      +  TK++  +         +
Sbjct: 67  SVNSIIASLNRFMQFAGWQEFRVK---QLKKQRQVYCPEEKELTKQEYFELIRTAKREGK 123

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAM 247
            +  L  + +  +G+R S+     VQ ++N +  +  +     + +        M  +  
Sbjct: 124 EKIGLIIQTIGSTGIRISELPSITVQAVKNGVAQVDCKGKNRQVLLPRKLLVKLMHYIRK 183

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
             I     FI      ++ +      K     AGVN+     H +R   A          
Sbjct: 184 EHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDI 243

Query: 305 HELMATYGWKTVDQAETYT 323
            +L    G   ++    Y 
Sbjct: 244 AKLADLLGHSNINTTRIYI 262


>gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269]
          Length = 389

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 98/282 (34%), Gaps = 20/282 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHI- 119
           + P TL  L +E  K     S +  +  +        +  +R  G  D     I+ +   
Sbjct: 99  RNPMTLLALSAEELKEQR-ESKSEGTCCNNRNSDKQLNSFVRSLGEEDIPLTAISIEFFD 157

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             R  ++   + P++  + L  +  L   AV Q  +  NP   V+  +      R  +K 
Sbjct: 158 DYRFYLKKEGYAPATTNRHLCWLSRLMYRAVSQGTIRFNPFEEVKY-EAVENKPRFLSKG 216

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           D+++   F  +       R  F F ++SGL  +D        ++ N    +  +     T
Sbjct: 217 DVEKLLVFPLQDEGAELSRRMFLFSVFSGLAFADLQSLRASQIETNSEGKRYIRKTRQKT 276

Query: 235 -----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                + L     ++L+     K           M+  + S   KA     G+    + H
Sbjct: 277 EVESLIPLHPIAEQILSRYTKEKSKGDYKIFPDTMSKGKLSTHLKAVGLACGIRTPLTWH 336

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R    T++ +AG     +    G  ++   + Y +  D+ 
Sbjct: 337 VGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQK 378


>gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 281

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 20/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + L+++Y+K     +L+ N+  ++E         +     ++IT + ++         + 
Sbjct: 4   EELLNDYKKFLKKKNLSNNTITAYEGSVRLFFSLN-----KEITPESLQRYKNYLISHYR 58

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184
           P++  Q + +M    ++             S   P  K +           +        
Sbjct: 59  PATVNQRIHAMNHYSRFLTETSGEEYTFIASYHLPSVKVQQKTFMDSVISNEDYELLKGK 118

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               +         FL  +G R S   +  V+HL      + ++               +
Sbjct: 119 LKEEKNYFWYFIVRFLAATGARVSVLVQIKVEHLNLGYLDLYSKGGKVRRIYFPDSLCQE 178

Query: 244 LLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
            L       +        +    +     +   K  A + G++      H  R   A   
Sbjct: 179 ALEWCHDKDKRSGFLFLNKDGRLITPRGINSQLKHLAKRYGIDPDTVYPHSFRHRFAKNF 238

Query: 298 ADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
                    L    G ++++    Y T+ +   +  +   
Sbjct: 239 LACFNDISLLADLMGHESIETTRIYLTRSSQEQQQLLDEI 278


>gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM
           15897]
          Length = 354

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 82/288 (28%), Gaps = 35/288 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            LI  +        L+  +   +    ++ +         + T   +R     R      
Sbjct: 54  ELIQRFLIQKKIDGLSKRTIDYYRVTLEKWLHFYIKKSVLEWTRDDVRMHFARRMIDYPD 113

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
            +  +      +    F W + + Y+   NP  ++++ K       P   + ++  +   
Sbjct: 114 VSKVTINNDRRNFSSFFTWLMDEGYLRNGNPMKAMKKIKVDKVIKEPIPDDQIEVMRDKL 173

Query: 186 -------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231
                        W +  + +  FE LL +G R  +   A ++ L           K   
Sbjct: 174 AEKKSANKIGTRLWLKAVRDQAIFELLLTTGCRIGELTTAKIKDLDLERKEIKVFGKGAK 233

Query: 232 IITVELPD----GFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKAT 278
                L         + L      +  +   +            ++  +   I  +    
Sbjct: 234 ERVCYLNTLSVLRMQQWLEARKDIENEYIFVSCDSANGKKGNHARLQISGVEINIRKLGR 293

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           + G      H  R+ +AT +   G    ++    G + +D    Y K 
Sbjct: 294 ECGFENIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKT 341


>gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668]
 gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668]
          Length = 381

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 97/375 (25%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R       Y F+    +              A                    +P TLK 
Sbjct: 5   RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSGDFD---YRKITTKH---I 119
            + +Y ++    S   N                    +   G        ++TT+    +
Sbjct: 63  ALEQYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMLPDTLLHELTTRDFDLL 122

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +  ++    P++    +  +R          + V +E V      S       +     
Sbjct: 123 AAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182

Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             +E   +        S+P                 FLL +G R S+        +  + 
Sbjct: 183 LLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINLDT 242

Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277
            +    +++     +          L       +       + +  N   +S    K   
Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302

Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AG+N            + H +R   A+    AG + +E+    G       + Y   +
Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362

Query: 327 --DRIRLGIKNSRRI 339
             D  R  +K    +
Sbjct: 363 PNDASRKAVKVIDSL 377


>gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86]
          Length = 345

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 87/334 (26%), Gaps = 30/334 (8%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDLVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              +G     L    G   +     Y      +R
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLETALR 324


>gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 296

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 88/292 (30%), Gaps = 21/292 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRK-ITTKHI---RSGV 123
           T+      Y  +    S +     R     + + I++  G     + IT K++   R+ +
Sbjct: 3   TISDAWELY--ANLVLSSSPAYCIRTETGRWNNHIVKYFGSTHLVENITNKNLLSFRAAL 60

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++ +P +    L+ +R +     +Q  +      + + PK   + +R  TK +     
Sbjct: 61  VKKRLSPQTITHCLSLLRRVL-HRAQQWDLLDAKLPNFDMPKFDNKRVRFLTKSEANTLL 119

Query: 184 SFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
              S  SQ         L++GLR  +       H      ++   +T +     +P    
Sbjct: 120 VELSLKSQLWHDISLLALHTGLRAGEIFSLRPSHFDQPNSALYIFETKSNRNRSIPLNAT 179

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFS 293
               +      +      +        +  F         N            H +R   
Sbjct: 180 ARHILKANCAGSTDFVFKEHDRQIKNVNRIFSTAVQTCQFNTPTQDRRQRVVFHTLRHTF 239

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           A+    AG     +    G K++     Y   A     G    + +   VD 
Sbjct: 240 ASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHLAPTQ--GATAVKALEQFVDY 289


>gi|239627043|ref|ZP_04670074.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517189|gb|EEQ57055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 298

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 16/275 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
           I EY +       +  +   +  Y  Q    +GD      T + +       +   TP +
Sbjct: 14  IEEYGQWLESCERSRETVKKYRHYLKQFKEFTGDGPV---TKEVVLLWKADLRERLTPVT 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++   FK+       +    +S           +  TK++  +           
Sbjct: 71  INCVIAALNGFFKYCGWDGCESKFLKISKSSFYP---ERKELTKDEYGRLVKTAFANGNE 127

Query: 193 RLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMT 248
           RLA   E +  SG+R S+     V+ ++     I+ +     +  T +L        +  
Sbjct: 128 RLALVLETICVSGIRVSELSFITVEAIRRGQAEIECKGRIRTVLLTRQLCTILQSYASKK 187

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAH 305
            I     F+    + ++ +      KA   +AGV       H +R   A    +      
Sbjct: 188 NISTGMIFVTKSGKALDRSNIWREMKALGMEAGVKNEKIFPHNLRHLFARTYYEIEKNLS 247

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
           +L    G + ++    YTK +  + RL ++  R +
Sbjct: 248 KLADILGHRDINTTRIYTKESGSQHRLQLEKMRLL 282


>gi|14251156|ref|NP_116524.1| integrase [Lactococcus phage BK5-T]
 gi|928834|gb|AAA98585.1| integrase [Lactococcus phage BK5-T]
 gi|26005553|emb|CAC80173.1| integrase [Lactococcus phage BK5-T]
          Length = 374

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       +  N  +IK ++T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +       
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLNISTPLTIHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5]
 gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5]
          Length = 290

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 93/288 (32%), Gaps = 26/288 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130
           ++  + +     + +  ++ ++     +  +            +    +   V+     P
Sbjct: 3   VLEAWERHLE-KTKSQKTKETYLMLVKEFFKFHKVDEKEIIENLKPSMVYRFVDESDLNP 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE----------RPKRKTEGIRPWTKEDMQ 180
           SS +  L+++R   K+  R+EY+  +   S++            K+     R  T+E+++
Sbjct: 62  SSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRALTREEIE 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDS-------CRAGVQHLQNNIFSIKTQKTGTII 233
                  +G +    +   LYSG+R  +               +     + +  K     
Sbjct: 122 A-IFEKVKGKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGILWIKLTPEMTKRNKGR 180

Query: 234 TVELPDGFM-KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
            V +      + L +T              ++      ++    + +  ++ S H  R  
Sbjct: 181 LVPILSPDKDETLKVTEKLSRWIEDFEGNFRVKRGVLQVYTDRLSKRLNIDFSIHSFRHT 240

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
             T   ++G     +    G  ++    ETY K   + R   +  R  
Sbjct: 241 YITNLINSGFPIEVVKEFAGHSSIKTTVETYYK-FSQKR-AQELVRNF 286


>gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205]
          Length = 319

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 74/278 (26%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKH- 128
           L+  +         +  +R  +       +    R       R+I      + +    H 
Sbjct: 29  LLKRFLAQCSRSG-SQETRDGYAREIRHYVSWRDRHHPHLHLREIDPSLTENWIAELLHA 87

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  P S  + ++++  +++WA      A+        P R         K   +  
Sbjct: 88  VEVGELKPRSFNRRVSAVSAMYRWASEPSRSAVTGVPRNPIPPRVQLHAPKLAKPLPEAD 147

Query: 183 KSFW------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSI 224
            S                 ++  +        G R S+  R     ++            
Sbjct: 148 LSAVLGRISQAKAEGSKTAARDFVLVRGSYLLGCRVSELARLKWGDIEAVDGGGQVTLLG 207

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           K  K  T+          + L     G   F  N     ++    +   +    +A V+ 
Sbjct: 208 KGSKQRTVRISVETLELFESLGRRESGDWVFPSNRKDGPLSRQAIAERMRRWGREAEVHL 267

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             H +R   AT +   G     L AT G  +      Y
Sbjct: 268 HPHKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGY 305


>gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 423

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 94/300 (31%), Gaps = 23/300 (7%)

Query: 64  PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF------DYRKI 114
            ++   T+  L  ++ +        S++  +   ++    +      D          ++
Sbjct: 112 KKQDIDTIMQLFDKHNEDVAARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRRDLKLTEL 171

Query: 115 TTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           T   I       +      P++A + + + + +     +   +  +P ++      +   
Sbjct: 172 TYMIIHDFDLYLRTVVGQNPNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRF-HLEPVN 230

Query: 171 IRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               T E++ Q  +      +    R  F F  ++GL   D       ++          
Sbjct: 231 RGFLTDEEVLQIVNKELNIPRLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIM 290

Query: 228 KTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                 +VE     + +    ++    +T+        ++  + + + K  A   G+ K 
Sbjct: 291 TKRQKTSVETNVLLLDIPKRIISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKN 350

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            + H  R   AT+S   G     +    G   +   + Y +  ++       + + ++  
Sbjct: 351 LTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGK 410


>gi|307610879|emb|CBX00496.1| prophage dlp12 integrase [Legionella pneumophila 130b]
          Length = 324

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 94/329 (28%), Gaps = 18/329 (5%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +   + +   +  G+R+R           A            +          T    + 
Sbjct: 5   KRDGVWWLDIRHQGKRVR-KSTGTEIREDALRLHDQLKHELWQTDKIKSLPNRTWMDAVL 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSA 133
            +   +        S  + + +   +           I     + I    E+   + ++ 
Sbjct: 64  RWIDESSHK----RSLETDKYHLAWLDSFLRAKKLSDIDRDLIEFIAKKKEAEHVSLTTV 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + L  +R +   A ++    ++    +   K + + IR  TKE+               
Sbjct: 120 NRVLELVRAILNRAHKEWG-WLDKTPIIRMRKIENKRIRWLTKEEAN--LLLKELPPHLE 176

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTP 249
               F L +GLR S+  +     +  +                I V L    + +L    
Sbjct: 177 AMASFTLATGLRESNVTQLKWSEINLDKKHALIHADESKSKRPIPVPLNKQAISILKAQQ 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
               T+    +   +     +  ++    +AG+ +   H +R   A+     G   HEL 
Sbjct: 237 GRNSTYVFTYNGNPVTRCN-NHAWQKALIRAGINDFRWHDLRHTWASWHVQNGTPLHELQ 295

Query: 309 ATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
              GW   +    Y   +   +R   +  
Sbjct: 296 QLGGWSNYEMVLRYAHLSSAHLRAAAERV 324


>gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 448

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 91/367 (24%), Gaps = 63/367 (17%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           IRL      +       A              + +  T   L   Y+  A    ++  S 
Sbjct: 80  IRLGR-RPQSLKERREMAEAARLEAERTAARAKLRSITFGELAELYKAWAKERRVSAGSV 138

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------------SRKHTPSSAIQF 136
                    I+   GD    +IT   + +  +                    +P + +  
Sbjct: 139 EQVLDM--HILPVLGDRVAAEITPADVEALRKLVADKHPLTGRNKNTPGACLSPQTVLHV 196

Query: 137 LTSMRVLFKWAVR---------------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           L ++R +F +A+                   +       +  PK     +R    +++  
Sbjct: 197 LKTVREVFNFALETPAPHEPGVMLFSGMNPAIISRRGRGIHVPKNDARRLRILNDKEITT 256

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------------HLQNNIFSIKTQK 228
             ++     +       ++   L         V               +        T K
Sbjct: 257 LLAYRGRRKEAFADLHDMILLSLDIGPRAGELVHIRRESCDPVTGAVRIYKGSRDNDTTK 316

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGV 282
            G    +     F +   M                       ++   +   +    K   
Sbjct: 317 GGASRLLFAGQLFPEAWEMLRSRLSQPGNGPYLFPGPGGKARDSNGLNRAMRRIMEKLKF 376

Query: 283 NKS---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           N+           H +R   AT   +AG   + L    G  +V   E Y    DR +   
Sbjct: 377 NEGVDDPRNTVVWHTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKR-E 435

Query: 334 KNSRRIS 340
           +   RI+
Sbjct: 436 QALARIA 442


>gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA]
 gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA]
          Length = 534

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 83/312 (26%), Gaps = 31/312 (9%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
               +T    +++A+     +     S  +        I +Y +   +   +  +  S  
Sbjct: 214 DTFFATVAKKWLAAMNMYKVEETKSISDIR--------IEKYLQDLRYRGYSYATLTSSL 265

Query: 97  SYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                     G                     S      +   ++  +R    +A  Q +
Sbjct: 266 RSLHYFYDTIGKQNTEKPITLADIDKCIEMYTSCHTNRHTNKAYMARIRSYLHYATEQGW 325

Query: 153 VAINPCLSVERPKRKTEG----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLR 205
                C +V  P+   E        W        +   ++G   R  +  +L     GLR
Sbjct: 326 CQPGVCEAVVLPRIYKEENLPSFMSWNMVQAILQRMKNAKGKSARRNYTVVLLLATYGLR 385

Query: 206 CSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           CS+     +  +      I  Q           +   + +  ++ L              
Sbjct: 386 CSEVANLKISDIDWRKEQIHIQHAKGGKSQTFPLLHSVGEAIIEYLRFERRNDLYNDSLF 445

Query: 260 DKQK-----MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
              K     +         + +     +  K  H +R   AT   + G T  E+    G 
Sbjct: 446 FCAKAPFRTITCHAIHDIVRKELHDVSIKHKGPHSLRHSYATFLINNGQTMKEVGDLLGH 505

Query: 314 KTVDQAETYTKG 325
           K++D    Y K 
Sbjct: 506 KSIDSTRIYAKV 517


>gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 340

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 94/324 (29%), Gaps = 56/324 (17%)

Query: 68  PTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV 123
           P +++  + ++    A   + + ++  ++      ++      G      +    +RS +
Sbjct: 16  PASMREAVDDFADHLARVRNRSAHTVRAYVGDLVSLLDHAARMGCTAVADLDLGMVRSWL 75

Query: 124 ESRKH-------------------------------------TPSSAIQFLTSMRVLFKW 146
             ++                                      +P +     T +R     
Sbjct: 76  AKQRTTGAARTTMARRAAAARAFSAWAHRAGLVPTDVAAPLASPRAHRDLPTVLRA--DQ 133

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           A        +P         +       +     + +   +   + RL  E L  +G+R 
Sbjct: 134 AATLMRATTSPAGLGSDGPLEGPNPVKISPGGGGEREVAQALALRDRLLLELLYATGVRV 193

Query: 207 SDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINN------ 259
           S++C      + ++   ++   K     +V       + L                    
Sbjct: 194 SEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGRPVLTGPGSGGAL 253

Query: 260 ----DKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWK 314
                  +++ T         A  AG+ ++  HG+R  +AT   + GA    +    G  
Sbjct: 254 LLGARGGRLHPTMARRIVAGYAEAAGLPRTTPHGLRHSAATHLLEGGADLRAVQELLGHS 313

Query: 315 TVDQAETYTK-GADRIRLGIKNSR 337
           ++   + YT    +R+R   + + 
Sbjct: 314 SLASTQIYTHVSVERLRAAYRQAH 337


>gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein
           [Fusobacterium sp. 3_1_5R]
          Length = 346

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 23/311 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL+     ++          T ++L  ++       +L+ NS   ++   ++        
Sbjct: 39  ALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERFDSVI-KK 97

Query: 110 DYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++  +TT+ +R  + +     SS            ++  F++ V +  +  NP   ++  
Sbjct: 98  NFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTRIKPI 157

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +  T    P++  ++++ ++        +   E L+ +  R  +     +  +     SI
Sbjct: 158 RGNTSEKLPFSNMEIEKLRNAC-SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSI 216

Query: 225 KTQKTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +T   G                I     +   K + +   GK   F     +  +A+   
Sbjct: 217 RTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLY 276

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              K    KAGV +   H  R+ +AT + D G    ++      + +     YT   ++ 
Sbjct: 277 ALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-TLNKD 335

Query: 330 RLGIKNSRRIS 340
           RL  K++R + 
Sbjct: 336 RLKDKHNRFLD 346


>gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 327

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 79/302 (26%), Gaps = 15/302 (4%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR  +  ++        A+     K         +P T   LI  + K     ++
Sbjct: 20  RAGKRIRKKFKTKAEAQQFERWAIATQNDKDWLEKPADNRPLT--ELIELWWKHHG-QNM 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
               + + +     +  K G     +IT          R        +       +  +F
Sbjct: 77  KDGVKRAHK--LRVMAAKMGHPKASQITRTFFSDYRVLRLAEGKKAKTVNLDQEMLGGVF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
              +   +      L   +  +       +   D  +      EG   +      L +G 
Sbjct: 135 SVLIELGHYHSEHPLKAMKKIKLPAQEMGFLTNDEIRTLLSRLEGDHLKAVKLC-LATGA 193

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  +  +     +  N  +    K     TV +     + L         F   N     
Sbjct: 194 RWGEVAKLRRDEIIGNKVTYLDTKNSKNRTVPISHELCEQLTDGIKTGPLFKSLNYPY-- 251

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                 I  K  A      ++ H +R   A+     G     L    G   + Q   Y  
Sbjct: 252 ----VRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAH 307

Query: 325 GA 326
            A
Sbjct: 308 FA 309


>gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 395

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 92/327 (28%), Gaps = 20/327 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R      IRL      +                          TT+     ++   +   
Sbjct: 61  RARITENIRLGR-RPQSLAEMREMMREAREQAAIEERRAANAATTMNEFWEKHYLPSSTL 119

Query: 86  SLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMR 141
                +  +    Y   I    GD     +T   I        +   + ++    L  + 
Sbjct: 120 HKTPQTMKTESGYYAKWIRPVLGDSALSDLTPPLIEQVASNAMTAGRSAATIRHLLAIIS 179

Query: 142 VLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
            ++  A   E V    PC  +++P++    +R  T+ +         + S+    +    
Sbjct: 180 QIWGMARNHEIVNGECPCTRIKKPRKDNRRMRFLTEAEASTLLVELEKRSKDTHDSALLS 239

Query: 200 LYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFF 256
           L+ GLR  +        L        I+  K        + D    +L         T +
Sbjct: 240 LFCGLRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIERSKQLNATEY 299

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHEL 307
           +   +        S  F+    + G+N            H +R   A+     G   + +
Sbjct: 300 VFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPLYTV 359

Query: 308 MATYGWKTVDQAETYTKGA-DRIRLGI 333
               G  T++  + Y+  + D +R   
Sbjct: 360 AELMGHTTLEMTKRYSHLSPDTVRAAA 386


>gi|326330366|ref|ZP_08196676.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
 gi|325951903|gb|EGD43933.1| putative phage integrase [Nocardioidaceae bacterium Broad-1]
          Length = 382

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 30/337 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA----YMSALTGSTPKREYINSP 64
               +  T+ G++    R       R    H   F              +   R    +P
Sbjct: 6   KHTARWTTKEGEVRTKVRWRAVYVDRAGEEHVKHFDRKTEGQDWIDEQTAGLVRGDWVNP 65

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
                T K     +R        A ++R +FE   +  I  K GD+    I    ++  V
Sbjct: 66  ELGKQTFKAYAEAWRARQVH---AESTRTTFEIALNAHIYPKIGDWRIDSIRQADVQELV 122

Query: 124 ESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                T  P++       + ++ K A ++  +A +PC     P+   +            
Sbjct: 123 AKWSATAAPTTVHLRYGVLAIVMKAAAKERVLAGSPCEGTRLPRLDPKSALV-PITTDVV 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------------SIKTQ 227
            +       + +     L  +G+R  +     V  +  +                    +
Sbjct: 182 KELSEMIYPRYKNLITVLAGTGMRRGEILGLTVDRVSTDFNTIRVDRQLRTTEPTWKPPK 241

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV 282
              ++ T+ +PD  ++ +               F N+    +  +   + +   A K   
Sbjct: 242 TPSSVRTMAVPDIVLEAIEDQKKTFGIHESGLIFTNSSGNPIGKSTLWMAWNTAAKKVKT 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           + + H +R + A++   AG +   L A  G K   + 
Sbjct: 302 DATPHDLRHYFASMHIRAGTSIKALQALLGHKNAAET 338


>gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna
           ATCC 53516]
 gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 411

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      T K        +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
              K + +    +   +++ S   E  +    F  +L++G+R  +               
Sbjct: 175 ESLKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234

Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                          L N       +      ++ +         M    ++TF I    
Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTVSGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|82751481|ref|YP_417222.1| integrase [Staphylococcus aureus RF122]
 gi|82657012|emb|CAI81449.1| integrase [Staphylococcus aureus RF122]
          Length = 354

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 101/352 (28%), Gaps = 30/352 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK  Y F     R  +  +  +   + A   A                  T+     ++
Sbjct: 8   KGKWYYDFGHEGKRYKKKGFTTKREAVQAESIARNKVMK-----GFKINDKTSFIAYYND 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRK--HTP 130
           + K    G +   +  +F++  +Q           +     + T   R  ++     H+ 
Sbjct: 63  WIKVNKEGVITDKAYATFKNAINQFKTFLEVENISNLVLSDLNTTFYRKFIKWYGSNHST 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFW 186
            +  +    ++     A+++  +  +P   V      P ++ E      K+ +   +   
Sbjct: 123 ETVRKIHNCLKQPIDDAIQEGLIHKDPTYKVVVKGTIPAQREEEKFMSIKDFINLKEYVS 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPD 239
           +   Q  L    L+ +G R  +  R     L     +I    T T        I      
Sbjct: 183 NTPIQSYLFIYILIITGGRFGEVQRLCTSDLDYKNCTIHLPGTKTETSDRTVDIPQNDMK 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                LA  PI   T   N     +     +   +    +  +   + H +R    +   
Sbjct: 243 ILKNTLAEMPISLTTQLFNTGTSLITHNAVTKVMQRYCLEKRIGKYTLHSIRHTHCSYLL 302

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGAD-----RIRLGIKNSRRISSVVD 344
               + + +    G K++      Y+   D          +     ++  ++
Sbjct: 303 HNDVSIYYISKRLGHKSIKTTMDVYSHLLDEIEQKEKEKALDALENMTGTLN 354


>gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925]
          Length = 274

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 73/264 (27%), Gaps = 21/264 (7%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH----TPSSAIQ 135
                 +  +  S+     Q             KI    I        +       +  +
Sbjct: 12  LAKTRKSEKTIDSYIRDISQFNDYLKTNKKKLVKIKLSDIDEFKNFLIYDKELKIKTINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193
            L S+    K+      +        E+ + +       + +D++         +  + R
Sbjct: 72  KLVSINQYLKFNNISVDI------KQEKVQMQNFLDDMLSNQDIEDIIKATYAKDDVRAR 125

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                L Y+G+R S+  +  + +           K      V +P+    +       + 
Sbjct: 126 TIIYTLYYTGMRVSEMLQLTI-YDTKKSSISIIGKGSKHREVFVPNKLKTIWDNYMQVRI 184

Query: 254 TFF---INNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                     +  +N        K  A  AGV+KS   AH  R       AD G     +
Sbjct: 185 KKSTALFTGKRGPINRKTVDSIIKTYAETAGVDKSKAHAHNFRHLYCKNLADRGIDISTI 244

Query: 308 MATYGWKTVDQAETYTKGADRIRL 331
               G + ++    YT+      L
Sbjct: 245 ADIAGHQNINTTRIYTRKTKEELL 268


>gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70]
 gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70]
          Length = 349

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 87/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y    +GRR+R           A+     G    + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRNGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 389

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 18  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 77  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 194

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 375 EKETADMMDKLIENL 389


>gi|307291405|ref|ZP_07571289.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306497636|gb|EFM67169.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 408

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 105/396 (26%), Gaps = 71/396 (17%)

Query: 11  VTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +     ++G+  + +   +GR        +I                 + G     E++ 
Sbjct: 4   IKSYTLKNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +  T+   ++ +       ++   SRI +       I    G++   K      + 
Sbjct: 64  -ENPQKMTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQK 121

Query: 122 GVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------ 164
            + S              + ++      ++   FK A +  YV  NP   VE P      
Sbjct: 122 FINSLFTNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKE 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              K K        +E++    +   +     + F  +   GLR  +       +     
Sbjct: 182 KNNKEKKLEFYTLEQENLFLDTARNFDEYMWYVFFLIIFDLGLRKGEVMALRWFNFDFRD 241

Query: 222 FSIKTQKTGTIITVELPDGFMK----------------------------------LLAM 247
             +   K             +                                   +L M
Sbjct: 242 NILTFDKQRLYRKERPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYGINYDLTNNVLPM 301

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
           T   K+  FINN  +     +        +     KA + K   H  R  +A     AG 
Sbjct: 302 TKSNKDFLFINNRGKNVGLPIRQRSVDTAWHRIINKAQLPKIRIHDGRHTNAARLRQAGV 361

Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              ++    G K V   E Y    A+     +    
Sbjct: 362 PLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLE 397


>gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 410

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 98/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVSQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                            VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 362

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 85/324 (26%), Gaps = 41/324 (12%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A      +            T++  +  +  SAH  ++   S + +    ++I +  G+
Sbjct: 23  RAKEHDQGRNILRPGQSAPAWTVQEYLEYWL-SAHGPTIRAISLMGYRHAVNRINKIVGN 81

Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              + +    I+    +       P +     T   +    AV  EY+  NP   V  PK
Sbjct: 82  VKLKALKADKIQLAYGTMLKNGFKPRTIQTTHTIFAIALNDAVDWEYLPSNPASKVTPPK 141

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218
                      ++ ++        +  R      + +G+R ++        +        
Sbjct: 142 AGKREYTLLDMDEAKRLIDAAG-DTPIRAIIALAVGTGMRKAEITALKWSSIDLDAKKLY 200

Query: 219 ---------------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                                          ++       +   ++     +L A     
Sbjct: 201 VAEGAVYVKLDETPGQIVENDPKTSSGRRSLTLPDFVIDELRAHKIRQKEQRLKAGAAWV 260

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
                  N +        +  FK    +AG+     H +R   A+I    G     +   
Sbjct: 261 DHGLVFTNRRGGHIYVSINEMFKRVLAQAGLPDMRLHDLRHSLASILLAMGVHPKVVQEI 320

Query: 311 YGWKTVDQAE-TYTKGADRIRLGI 333
            G  ++      Y+     +    
Sbjct: 321 LGHSSITITMNIYSHVMPSMHSAA 344


>gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 382

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 188 LQRFVAVLENEDIQIQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338]
          Length = 329

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 102/322 (31%), Gaps = 40/322 (12%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKIT 115
           PR++  +L   I  Y +      LA NS  ++      +  +  +            ++T
Sbjct: 2   PRQEDASLAHWIEVYLEHLQARKLAANSLRAYRLDLTAVAGELAELTGRGTAELPVDELT 61

Query: 116 TKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           T  +RS         S+    +  ++    F + V +  V  NP   + +P+      +P
Sbjct: 62  TSVLRSAFARHAAARSASSVTRTWSTWNGFFGFLVVEGVVGGNPMQVIPKPRTAPATPKP 121

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFL----------LYSGLRCSDSCRAGVQHLQNNIFS 223
              ED  +           R    +           L +G+R ++     V  L      
Sbjct: 122 LQGEDTPERLLRTVSAGVRRARNPWPERDLAVLATLLCTGVRSAELLDLKVGSLAGRAGD 181

Query: 224 IKTQKTGT--------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
            +    G                +     +           G +  F+++ ++ +     
Sbjct: 182 RRLHVRGKGGKNRSIPIEDALDSVIQNYLETRRARFGERLPGSDPLFVDHREEPLRRGGL 241

Query: 270 SIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               +     AG++         H +R   AT  A+ GA+A E+    G  +++ ++TY 
Sbjct: 242 QYLVRQSLRAAGMSDRVQRGAMVHALRHTFATRLAEDGASAAEIAKLLGHASINSSQTYI 301

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
               R +     + R   V+  
Sbjct: 302 DVTAREQRLSVRANRTHRVLGE 323


>gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC]
 gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC]
          Length = 410

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/405 (11%), Positives = 99/405 (24%), Gaps = 86/405 (21%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-- 69
           ER + G   Y FR   G G+R  +       +                 ++   +     
Sbjct: 19  ERKKGG---YQFRWSTGDGKRHYM-------YANDLQELRVKEKEIIHDMDDGIRTDNMN 68

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR- 126
            TL  L + +  +     L  N+  ++   +D  +    G +  R +    I+       
Sbjct: 69  LTLNDLYNIW--TDVKKGLKPNTYNNYRYMYDHFVQESLGKYKVRTLHRTDIKRFYNRLV 126

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKED 178
                   +       +  + + AV  + +  N   +      +         +  T   
Sbjct: 127 DIDGLKIDTVGTIHLIIHQILQLAVEDDILRKNVSDNGLRDLKKVRGLHGAKRKALTVAQ 186

Query: 179 MQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229
              F +F     + R  +     ++ SGLR  +      Q +      I    T      
Sbjct: 187 QNLFLNFVKSSPKYRHWYPTFAVMVGSGLRVGELTGLRWQDIDFQNNLINVNHTLIFYDR 246

Query: 230 -------------------------------GTIITVELPDGFMKLLAMTPIGKETFFIN 258
                                                 L D  +  + +    K+  F+N
Sbjct: 247 SKAKYTGFGINTPKTKAGYRSVPMIASVKEAFEEQKQYLKDNDLCSIDVIDGFKDFIFVN 306

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN----------------KSAHGVRKFSATISADAGA 302
                 +    +   K     A  +                 S H +R    T   ++G 
Sbjct: 307 RFGHVQHQGTLNKAIKRIIRDANFDALEKNPAIKEENLLPNFSCHTLRHTFTTRLIESGM 366

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
               +    G   +    + Y        L  +   +    +  D
Sbjct: 367 NIKVIQEALGHSDIQTTLDIYADVT--KELKQQQFTKFEDFITKD 409


>gi|222097940|ref|YP_002531997.1| integrase/recombinase [Bacillus cereus Q1]
 gi|221241998|gb|ACM14708.1| integrase/recombinase [Bacillus cereus Q1]
          Length = 332

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 77/316 (24%), Gaps = 23/316 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           + R            +   L     K+E   +      T+   +    +      L   +
Sbjct: 3   KKRDSLTISEDLSNVFGDRLKSDQRKKETAENRYTFNLTIDKALEIIVRQMKATGLRERT 62

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +  +     + +      ++   HI   + S   +  + +  L  ++          
Sbjct: 63  INDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           ++ IN   +V+             +E                +   A   +  +G+R   
Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182

Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +   +H              ++N+              + +     +++      K  
Sbjct: 183 LAQLEHKHVDLDAKVLNVDGGIIKNHESIYLPFDDVLARLISVLMKQNEIIRREYNVKND 242

Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +                   S      A + G+   + H +R+  A      GA    + 
Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302

Query: 309 ATYGWKTVDQAETYTK 324
              G   +     Y  
Sbjct: 303 KALGHSDISVTTRYLH 318


>gi|85859016|ref|YP_461218.1| phage integrase family protein [Syntrophus aciditrophicus SB]
 gi|85722107|gb|ABC77050.1| phage integrase family protein [Syntrophus aciditrophicus SB]
          Length = 316

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 90/319 (28%), Gaps = 20/319 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
              + + G + +Y+   +  +         T   A  +         +    P      L
Sbjct: 4   YSRKLKRG-VRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQP--GEVLL 60

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-------GVE 124
           K LI E R        +         Y  +++   G+   + IT + I          + 
Sbjct: 61  KDLIEE-RLDIILHKKSKVYYRENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLR 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R  T   A   +   + LF + +    + +   +   +       ++    ++      
Sbjct: 120 KRGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFSVDINLKYIPTDEDILAVK 179

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 Q  L       +G R +++ R     + +N   + T+K                
Sbjct: 180 EGLTEEQKFLIDFCQ-QTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPC 238

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303
           LA     KE  F               + + +  K  +   + H +R   A+  +     
Sbjct: 239 LAGYKPKKERVFSEWSNVPR-------FLEKRVKKLDMKYWTWHNLRHKYASELSKRNVP 291

Query: 304 AHELMATYGWKTVDQAETY 322
             E+M   G   +   + Y
Sbjct: 292 LFEIMNLLGHSNMKTTQIY 310


>gi|218547967|ref|YP_002381758.1| integrase; DLP12 prophage [Escherichia fergusonii ATCC 35469]
 gi|218355508|emb|CAQ88119.1| putative integrase; DLP12 prophage [Escherichia fergusonii ATCC
           35469]
          Length = 387

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 112/379 (29%), Gaps = 57/379 (15%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G+     +    G+RI+           A                       T +   
Sbjct: 5   RRGEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVDRLGDFPDVTFEEAC 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          S  + +      +        + IT   I S V    +       
Sbjct: 64  LRWIEEKSDKK----SLDTDKGRMGFWLEHFEGVRLKDITEARIYSAVSRMHNRNHLEIW 119

Query: 131 ------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                                   ++  + L  M+ + + A  +++  +     ++ P  
Sbjct: 120 KAKAEAARKKGKPVPEYVAKPVTTATKAKHLALMKAILR-AAERDWKWLEKAPVIKIPTV 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IF 222
           + + +R   KE+ ++      E    +   +F L +GLR S+      Q +         
Sbjct: 179 RNKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRRSNIINLEWQQIDMQRRVAWI 236

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FS 270
           + +  K+   I V L D   K+L         F   + K                     
Sbjct: 237 NPEDSKSNRAIGVALNDTACKVLRDQIGNHHKFVFVHTKPARRPDGSLTPAVRKMRVDDG 296

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +KA   +AG+ +   H +R   A+    AG     L    GW++++    Y   A   
Sbjct: 297 RAWKAACRRAGIEDFRFHDLRHTWASWLIQAGVPLSVLQEMGGWESIEMVRRYAHLAPNH 356

Query: 330 RLGIKNSRRISSVVDSDDP 348
               +++++I ++ + D P
Sbjct: 357 --LTEHAKQIDAIFNDDVP 373


>gi|171316503|ref|ZP_02905720.1| integrase family protein [Burkholderia ambifaria MEX-5]
 gi|171098337|gb|EDT43142.1| integrase family protein [Burkholderia ambifaria MEX-5]
          Length = 342

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 103/348 (29%), Gaps = 35/348 (10%)

Query: 1   MTPSLRLP---PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P   P     +   G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   Y +       +  ++  ++ +  ++    GD +   +T
Sbjct: 61  AP-----SSETTRHTFAMLGQAY-RVRELPQKSAATQRMYDLFLSRLAAVIGDRELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              + +   +        +A +    + ++     R   +            +K  G + 
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLN-CGRLWGMMTIANPCAGVRGKKETGRQD 173

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              +D      +       R A +       R SD  R    ++       +TQKTG  +
Sbjct: 174 ILIDDELYAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGAFV 233

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS- 285
           TV++      L+      + +    +           +   +    F     +AG++K+ 
Sbjct: 234 TVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDKAK 293

Query: 286 --AHGVRKFSATIS-----ADAGATAHELMATYGWKTVDQAETYTKGA 326
                +R    T        +AG          G         Y +GA
Sbjct: 294 FQFRDLRARGVTHKTIDEGLEAG------QRLAGHSGPGMTARYVRGA 335


>gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185]
 gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185]
          Length = 319

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 66/297 (22%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  S+  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242
             SGLR S+  R  +Q +       +++  K        L                    
Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLTAYINKAMEIQH 190

Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------TKA 280
                         L                     T  + +                  
Sbjct: 191 RDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGKLCRHHLHQSVIRKAL 250

Query: 281 G---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           G            + H  R   AT    +G+    +    G   V   + YT    +
Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9]
 gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9]
          Length = 326

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 105/321 (32%), Gaps = 21/321 (6%)

Query: 10  FVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +++ ++   G+     R     GRR R           AY   +      R +I     K
Sbjct: 2   YMSIKKLDDGQYQVDVRPKGSEGRRYR-RKFSTKREATAYERYIQAQAHNRAWIEKSSDK 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
              L   IS + +      L   ++   +   + + ++  +    ++T K I      R 
Sbjct: 61  RK-LSEAISLWWRYHGQL-LKEGAQSKKK--LENLSQRMNNPMLCQVTKKRIIDYRSDRL 116

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               +P +  + +  +  +F   +  +EY   +P + + + K + + +   +  ++    
Sbjct: 117 SSGISPRTINKEVALLSGVFTQMINAEEYHHEHPIIGLRKLKERKQEMAFLSSSEISFLL 176

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    +   +  L +G R +++     +++     +    K G   T  +      
Sbjct: 177 QH--ASGDMKKIAKICLATGARWNEANDLRAENVTPYRVTFVATKNGNNRTTPISKELFD 234

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
            ++    G+               +F ++FK+        ++ H +R   A+     G  
Sbjct: 235 EISSEKSGRLFTPC--------YDKFYLFFKSLNFNLPKGQAVHVLRHTFASHFMQNGGN 286

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    G  T+ Q   Y  
Sbjct: 287 ILTLQKALGHATIQQTMEYAH 307


>gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 397

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 94/330 (28%), Gaps = 52/330 (15%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFD-- 100
            A  +       +    ++ +    T      + ++       ++   +  ++       
Sbjct: 50  EARAAKEAELEARAIERSTGKAPAGTILFTAFLLDWLDMTK-KNVEETTYGAYSMTIKSK 108

Query: 101 ---QIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
                          ++T KHI+         R  + ++ I    ++R   + A +   +
Sbjct: 109 IIPYFEEHHPGLALCEVTPKHIQDYYTYELTVRGVSANTVIHRHANIRKALQHAFKLGLI 168

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             NP   +ERPK++      + +E          +G    L      + GLR S++    
Sbjct: 169 DTNPADRIERPKKEKFVGSVY-EEYELNRLFEIVKGDPIELGVILGAFYGLRRSEAVGLK 227

Query: 214 VQHLQN---------------------NIFSIKTQKTGTIITVELPDGFMKLLA------ 246
              +                        I   +T+   +  ++ L   F +LL       
Sbjct: 228 WDAIDFKKKTITIRHTVTQATIDGKSKIIQKDRTKTKSSYRSLPLVPPFEELLHRLKAQQ 287

Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                              ++N   + +     +  F     K G+ K   H +R   A+
Sbjct: 288 ELNQKLCGRSYCKKYTGYIYVNEIGELVKPGYLTQHFPLILQKNGMRKIRFHDLRHSCAS 347

Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +    G +  E+    G   +      YT 
Sbjct: 348 LLYANGVSLKEIQEWLGHSDISTTSNIYTH 377


>gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 379

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 13/241 (5%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRK 167
              +         + +    ++   +L ++R     AV ++Y+ +NP   ++    PKR 
Sbjct: 141 IDYLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRN 200

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
                  T +++ +           R AF F  + GLR  D      + ++ +       
Sbjct: 201 RTERDYLTIKELTRLVHTPFYNILLRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALL 260

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +KT   I++ L    +K L       ET  +      +  +           +AG+
Sbjct: 261 SIIQKKTKEAISLPLCSEAIKHLPDRGNAPETEKVFAGLVSLGRSNV--ILHKWVEQAGI 318

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRI 339
             + + H  R   AT+    G   + +    G   +   + Y K  D   +  I     I
Sbjct: 319 SKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAIDLIPNI 378

Query: 340 S 340
           S
Sbjct: 379 S 379


>gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98]
 gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98]
 gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 382

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWNDIDLNEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILREKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 438

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 23/294 (7%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL  L  ++          S++V +   +                  D    ++T   I 
Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 + T    P++A + + + + +     +   +  +P ++      +       T 
Sbjct: 199 DFDIYLRTTAGQNPNTATKTMKTFKTITILGRKMGALNHDPFINH-HFHLEPVNRGFLTD 257

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++ +  +     ++    R  F F  ++GL   D       ++                
Sbjct: 258 EEIMKIANKDFGINRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317

Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +VE     + +    +T  G +T+        +   + + + K  A   G+ K  + H  
Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
           R   AT+S   G     +    G   +   + Y +  ++       + + ++S 
Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEELAGKLSK 431


>gi|23455720|ref|NP_695029.1| Integrase [Lactococcus phage r1t]
 gi|1353518|gb|AAB18676.1| Integrase [Lactococcus phage r1t]
          Length = 374

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       ++ +   IK  +T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIKFDNNVIKCHRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +      +
Sbjct: 242 TDAGIRDIVIDDESMQLLKYFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLE 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|116511837|ref|YP_809053.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107491|gb|ABJ72631.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 374

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 100/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       +  N  +IK ++T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +      +
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLE 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 320

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 64/259 (24%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +YR      +++ N+   +     Q      +  Y  +    +        + P +  
Sbjct: 55  IEDYRLYLSAQNMSENTIHVYAYAIRQFFALYHEITYSNLK---LYKVFLLEHYKPQTVN 111

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    ++            +  +           +        +           
Sbjct: 112 LRIRALNSYIEFKKLNPGKIPMVRIQHKNYLDNVISEADYEYLKNCLLRDEKYL---YYF 168

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              F+  +G R S+  +   + +      I ++                 +  L      
Sbjct: 169 IIRFMAATGARVSEVIQFEAEDIFTGYKDIYSKGNKLRRIYVPKALQKDAIAWLKAIRQE 228

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
           +   F+N     +         K  A   G+N      H  R   A    +       L 
Sbjct: 229 RGFVFLNRYGNPITPGGIRGQLKNMALAYGMNPEVVHPHSFRHRFAKSFIEKCGDISLLS 288

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G K ++    Y + + 
Sbjct: 289 DLLGHKNLETTRIYLRRSS 307


>gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75]
 gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75]
          Length = 350

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 85/330 (25%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  +        +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREDVNLTRSQVTKYRITFVRAKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R]
          Length = 308

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 92/301 (30%), Gaps = 33/301 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVESRK 127
           T++ +   +R++     +  ++  ++     + I+ K G+ +   +   +          
Sbjct: 5   TIREISDAWRENKRPY-VKQSTLAAYMLILENHILPKFGESNELHENDVQGFVLEKLEGG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L  ++++ K+ V+ E++               + +   +  + ++  ++  
Sbjct: 64  LSMKSVKDILIVLKMVMKFGVKNEWMNYYEWDIKYPTDVAGKKLEVLSVANHKKILNYIQ 123

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              S P L     L +GLR  + C      +      +   +T   I +   +     L 
Sbjct: 124 SHFSFPGLGIYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELV 183

Query: 247 MTPIGKETFFI--------------------------NNDKQKMNATQFSIWFKAKATKA 280
           +     +                               ND+       +  ++K    K 
Sbjct: 184 INTPKTKNSCREIPINKELLTMLKPLKKVVNDDYYILTNDECPTEPRTYRNYYKRLMEKL 243

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
            + K   HG+R   AT   + G     +    G   +    + Y     ++ +  I    
Sbjct: 244 DIPKLKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCIAKVF 303

Query: 338 R 338
           +
Sbjct: 304 K 304


>gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
 gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528]
          Length = 336

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 81/291 (27%), Gaps = 37/291 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------------ 116
             + ++ Y  +        + N+  S+   F    R    F   KI              
Sbjct: 6   FSYYVTRYFTNYLDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVN 65

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +    + R+ T SS  Q L +++    + +R+     + C  V   + K    +    
Sbjct: 66  DFLNWIEKERQCTVSSRNQRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGY 125

Query: 177 EDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
            ++       +        G +       L  +G R  +     +  +   I +    T 
Sbjct: 126 LNIEAISYLLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDISFRIPNTVALTG 185

Query: 228 KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKA- 280
           K   I  V +     +++            +E  F+N     ++ +  +         A 
Sbjct: 186 KGNKIRVVPISQQVSEIIKNYLSISTRHNFEENIFVNRLGNPLSRSGVAYILNKYGDMAR 245

Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                        H +R   A    +       +    G  +V   E Y +
Sbjct: 246 KNRLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYAR 296


>gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R]
 gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 329

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 12/278 (4%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRK 113
           K E  +   +   T + L++ +  +      +  S   ++   + ++   G    +    
Sbjct: 37  KIEKNDFMEEDIWTNERLLNTFLSAKRVEGCSEKSLSYYQKTIETMLNSIGKEIKYIVTD 96

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               ++      ++ +  +       +   F W   ++Y+  +P   + + K  +     
Sbjct: 97  DLRSYLTEYQSEKQSSRVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDT 156

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232
           ++ E++++ +    E  +     + L  +G+R  +      Q +Q      I   K    
Sbjct: 157 YSDEELERMRDSCHE-IRDLALIDILASTGMRVGELVLLNRQDIQFGERECIVFGKGDKE 215

Query: 233 ITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-S 285
             V         L      +                ++      +  +    +  +NK  
Sbjct: 216 RVVYFDARTKIHLQNYLNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVH 275

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H  R+  ATI+ D G    +L    G + +D    Y 
Sbjct: 276 PHKFRRTLATIAIDKGMPIEQLQKLLGHRRIDTTLQYA 313


>gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium]
          Length = 330

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/329 (10%), Positives = 85/329 (25%), Gaps = 54/329 (16%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           +A      +R    +P  +   L+   L+ + R+       ++ +  ++  +    IR  
Sbjct: 4   AAPRSLPDRRLLRPAPVVELPALRAVRLLDQMRERLRMLHYSMRTEEAYLHWCKAFIRFH 63

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           G     ++    + + +         A      ++  +     +     +     + RP 
Sbjct: 64  GRRHPAEMAGPEVEAFLTHLAADRGLAPSSHRQALSAVLFLYGKVLGQQLPWMQDIGRPV 123

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--- 222
            K       +  ++++       G    LA      +GLR +++ +  V+ L        
Sbjct: 124 PKRRLPVVLSVPEVREVL-AQMTGEHLLLAQLL-YGTGLRITEALQLRVKDLDFGHRAVI 181

Query: 223 --------------------------------------------SIKTQKTGTIITVELP 238
                                                        +          +   
Sbjct: 182 VREGKGAKDRVVMLPQSLMPALREQLGRVRAVWAADVEAGTAGVEMPHALDRKYPRMGAS 241

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +        +       +  +    F   FK     AG+ K  + H +R   AT 
Sbjct: 242 WAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQRAFKRAVVAAGIEKPATPHTLRHSFATH 301

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
              +G+    +    G   V     YT  
Sbjct: 302 LLQSGSDIRTVQELLGHADVATTMIYTHV 330


>gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 329

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 91/298 (30%), Gaps = 48/298 (16%)

Query: 79  RKSAHWGSLAV--------------NSRISFESYFDQIIRKSGDFDYRK---ITTKHIRS 121
             SA +  LA                +R ++++     +  +G         IT  H+ +
Sbjct: 21  LTSAQFRKLAEVPPEIEWFANIDSLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLA 80

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +  +      ++  + L ++  LF++      V  NP   V+RP  ++   +     D
Sbjct: 81  WRKRLEEEQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGD 140

Query: 179 MQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-- 230
           +Q         +   +G + R     LLY G+R  +  R  V+    +   +   +    
Sbjct: 141 VQARALLEAPNAKTLKGKRDRAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGK 200

Query: 231 --TIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSI-WF 273
              +  +    G + L+                     +     +    +          
Sbjct: 201 GGKMRFIPTHPGTLTLIEEYLEAAGHGHDPDAPLFRPVKNNVHGHTLTALTPDSIYFEVV 260

Query: 274 KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                K G+   N   H +R  +AT + D GA   ++    G   +     Y     R
Sbjct: 261 LKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318


>gi|72537678|ref|YP_293708.1| prophage integrase [Burkholderia phage phi52237]
 gi|72398368|gb|AAZ72603.1| prophage integrase [Burkholderia phage phi52237]
          Length = 441

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R ++G   ++     G RIR      S    A   A   ++          +   T   
Sbjct: 53  KRQKNG-PWWFDLSIDGSRIR-QSSGTSDRRAAEELAAKVASDYWRQKKLGERPAVTWDA 110

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
            +  + K          ++         +  +    + R I  + I++ +E++       
Sbjct: 111 AVVHWLKQNQHQRSLETTKQR----LRWLTDQLKGENVRNIDRERIQALIETKAAEKYRG 166

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++  + + ++ V+      + ++   P   + + +  +  +   T+   Q+    
Sbjct: 167 SPVAGATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLL-- 222

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
               +  R    F L +GLR S+        +              K G +I+V L +  
Sbjct: 223 EELPTHLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDA 282

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
           + +L       + +        +    ++  ++    +AG+     H +R   A+    A
Sbjct: 283 LGVLREQQGQHKRYVFVYKGAPI-GRIYNHAWQKACVRAGLSGLRFHDLRHTWASWHVQA 341

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     L    GW +      Y  
Sbjct: 342 GTPLPILQQLGGWASYQMVLRYAH 365


>gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12]
 gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 393

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I+ +R      SL  +++ +  S  + +     D  +  +T + I S     +      
Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRGYKKDVSFSDLTFEFISSFDHYLQQKGYHT 166

Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L +       ++            + K         + E++ + +S   +G
Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSIENSHTHLSPEELGKIESLELDG 226

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD      +++               +           
Sbjct: 227 RFMKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L           K    + +  +  + +  +      A  +G+NK  S H  R  +AT+ 
Sbjct: 285 LLFEGKGIEVLNKYQDNLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +G     +    G K+V   + YT   D
Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|309808160|ref|ZP_07702071.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168596|gb|EFO70703.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
          Length = 329

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  K    + R++ T  +
Sbjct: 40  ETEEEVNAELTNEQFLNNFLAAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R         +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQHEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMRDSC-EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L     G+               +++         +    K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLRIGGVECRLRELGNKLNIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143]
 gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143]
          Length = 351

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 91/330 (27%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+     G    + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  +      ++   G+     +T+K      + R     
Sbjct: 62  KDMVELWFK-LHGKSLTAG-QHVYNKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                     +P +     + +  +F+   R  E+   NP   + +     + +   T E
Sbjct: 119 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 178

Query: 178 DMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + +  S          L  +  L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIIELLSDCKRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|163759730|ref|ZP_02166815.1| site-specific recombinase, phage integrase family protein [Hoeflea
           phototrophica DFL-43]
 gi|162283327|gb|EDQ33613.1| site-specific recombinase, phage integrase family protein [Hoeflea
           phototrophica DFL-43]
          Length = 364

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 93/335 (27%), Gaps = 28/335 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +TR G      R+  G+ +   +  ++                 E      ++  T+  L
Sbjct: 6   KTRQGHWRAQVRRK-GKYVSNTFRLKTQAHEWVRDIEHLIDIGGEPKRQSGRRAQTVGAL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
           +  + +       A+  R S  +  + + R  G     ++    +    + R      P 
Sbjct: 65  VDLHLEDLKEVGRAI--RRSKMAVMEALKRDLGTVRIDRLDRARLIQYGKQRAAEGAGPV 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--------INPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +    L+ +R +   A     V             L+      ++        ED     
Sbjct: 123 TLAVDLSYLRTVLTHAAAVHGVHVDTESIRLARTALARLGLVGRSHERDRRPTEDEIDAL 182

Query: 184 SFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             + +     +        F + + +R  + C+     +  +   +  +        E  
Sbjct: 183 LGYFDNKTNMIIPMGRIVRFAIATAMRQEEVCKIEWSDVDLSKRVVTIRNRKDPRNKEGN 242

Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
              + LL +T I                      ++      F+      G+ +   H +
Sbjct: 243 HQKVPLLNLTGIDAWQLLLEQKVLTGGIGRCFPYHSKSVGTAFRRARKHLGIEDLRFHDL 302

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   +AG +   +    G K       YT 
Sbjct: 303 RHEATSRLFEAGLSIERVALVTGHKDWKMLRRYTH 337


>gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574]
          Length = 438

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 94/296 (31%), Gaps = 25/296 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL  L  ++          S++V +   +                  D    ++T   I 
Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 + T    P++A + + + + +     +   +  +P ++      +       T 
Sbjct: 199 DFDIYLRTTAGQNPNTATKTMKTFKTITILGRKMGVLNHDPFINH-HFHLEPVNRGFLTD 257

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++ +  +     ++    R  F F  ++GL   D       ++                
Sbjct: 258 EEIMKIANKDFGINRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317

Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +VE     + +    +T  G +T+        +   + + + K  A   G+ K  + H  
Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVD 344
           R   AT+S   G     +    G   +   + Y +  ++    I++    ++  + 
Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---IEHDMEELAGKLG 430


>gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 323

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 85/275 (30%), Gaps = 35/275 (12%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144
           N+ +++       +      D   +T      +   S  +++  + ++  + L+++R L 
Sbjct: 28  NTLLAYGRDLRDFVDWLAARDETLLTVPREGVEDYLSHCDAQGLSRATRARRLSAIRQLT 87

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFE 197
           ++A+ + +   +P   +  P R     +   + ++Q             +E ++  +  E
Sbjct: 88  RFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETERARNLVLVE 147

Query: 198 FLLYSGLRCSDSC--------------------RAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  +G+R S+                              ++                 
Sbjct: 148 LVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWLKRRDDAP 207

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
            +  +  L      +  F   + +  M     +      A  AG++    S H +R   A
Sbjct: 208 AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDPARVSPHVIRHAFA 267

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T   + GA    +    G   +   E YT   D  
Sbjct: 268 THLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTR 302


>gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 308

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 92/303 (30%), Gaps = 33/303 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVESRKH 128
           L  +I  ++       +  +S  ++     + ++   G+     +   +           
Sbjct: 7   LSEVIDLWKIDKK-QYVKKSSFSAYTLLIENHLLPNFGNKIAIEEADVQSFVFQKLETGL 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +    L  ++++ K+  + +++   P       +R+   I   TK D ++  ++  E
Sbjct: 66  SHKTIKDILIVLKMILKFGAKNKWLQYTPFDIQFPTEREKHNIEVLTKTDQKKIMNYIQE 125

Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245
               R    ++  S G+R  + C    + +  +   I   +T   I V         L  
Sbjct: 126 HFTFRNLGVYICLSAGMRIGEVCALTWEDIDTDNGIISINRTIQRIYVIEDGTRRTELIL 185

Query: 246 ------------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                                       + +  F + ND +      +  ++K    +  
Sbjct: 186 DTPKTKNSIREIPISKDLLRILKPFKKIVNQSFFVLTNDAKPTEPRTYRSYYKNLMKELK 245

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338
           +     HG+R   AT   ++      +    G   +      Y     ++ +  I+   +
Sbjct: 246 MPELKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKKAIEQMFK 305

Query: 339 ISS 341
              
Sbjct: 306 ALR 308


>gi|168489338|ref|ZP_02713537.1| integrase [Streptococcus pneumoniae SP195]
 gi|183572289|gb|EDT92817.1| integrase [Streptococcus pneumoniae SP195]
 gi|332071706|gb|EGI82199.1| phage integrase family protein [Streptococcus pneumoniae GA17570]
          Length = 388

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/386 (12%), Positives = 115/386 (29%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+   + G  +Y            G++++          + A          K      
Sbjct: 3   ITEYTKKDGSTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGATVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++  ++ +  +      ++   G++   K+T   I+  
Sbjct: 63  KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121

Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +         +  + + K+AV  + +  NP   V  P+RK +  +   
Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262
            KT      IT       ++++                         +  E  F N+  +
Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            ++A   S        +AG  + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMD 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
            Y+  + D  +           ++ S
Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387


>gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739]
 gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739]
          Length = 350

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722]
          Length = 320

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 86/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I         K+    +   +         A++   
Sbjct: 10  KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAIDEKVAVKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +         + ++  +  ++   + +     T+++++  +       + +L  +
Sbjct: 70  LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVR--RFVQHIDPKYKLHIQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  +Q +  +  +++                                
Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHDPLKSQVNITRDY 187

Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +                        +  L   T +  +       +  +N +  
Sbjct: 188 YQKDRHMGGYAGVYISDGLRKKYPGAELDFNWHFLFPSTKLSIDADTGEFRRHHVNESAI 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A  AG+ K  + H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591]
 gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B]
 gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482]
 gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252]
 gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591]
          Length = 350

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 390

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 112/379 (29%), Gaps = 54/379 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLKWL 74
                Y    G   +         T       A   +      I +         T  ++
Sbjct: 9   KNNWRYRISLGKNPQTGKYEYISKTGFQRKSDAKHHAEMVERQIRNNEYIAPSAHTFSYI 68

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
             E+          V+S  + E          GD   + IT    +  V+    + + + 
Sbjct: 69  ADEFINHYR-KDAKVSSVRAREKAIKHAKVAFGDKAIQSITKHQYQQFVDDISTRFSKNY 127

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFK 183
               + S  ++FK+A+    +   P   ++RPK               +   KE++ +F 
Sbjct: 128 VDSIVASTNLVFKYALDMNLLKKLPNEGIKRPKQKVTVEELEHTELKQKFLEKEELFEFL 187

Query: 184 SFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
           +       P  +FE    + YSG R  +        +  + ++I                
Sbjct: 188 NVAKNDHPPLNSFELFTLMAYSGCRAGEILALKWSDVDFDNYTINITKTYYNPNNNKKNY 247

Query: 225 ---------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                 ++     +   K      +     F +N+   +   + 
Sbjct: 248 QILTPKTNASIGKLSIDPHVIKLLKDYKVNVQDKWKNELYVDNNFVFTDNNGYPLVIKKL 307

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
           S W ++  +K  ++K  + H  R     +  +AG    E+      K ++     Y K  
Sbjct: 308 SQWIQSIMSKTNIDKNITTHSFRYTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKIT 367

Query: 327 DRIRLGIKNSRRISSVVDS 345
           D  +     S++ S ++++
Sbjct: 368 DSYK--KDASQKFSQLMEN 384


>gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 420

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 97/327 (29%), Gaps = 28/327 (8%)

Query: 25  FRKGHGR-RIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           FR    R    + +  + T   A   A  + G             K    +     + K 
Sbjct: 65  FRHKGRRFSKTIGHDGDMTVAEARAIAAQIIGDVKTGRCHKPITPKERRFEVFAETFFKR 124

Query: 82  AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
               +    +       ++  I+      D + +T +++R    +    P +A + L  +
Sbjct: 125 YG-HNWKPVTLAGSRRAYEAYIVPFFTGMDVQTVTPENVRRWFAALHDRPGAANRSLALL 183

Query: 141 RVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            V+ +    +  R         +   R +++   +       + +  +     +  R+A 
Sbjct: 184 SVMMREAERYGYRDANTNPCKGMRRYRLRKQERFLSDDEYRHLGRMLAAQESVTPLRVAM 243

Query: 197 EFLLY-SGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGTIITVELPDGF 241
             LL  +G R S+       + +N                  +          ++     
Sbjct: 244 IRLLLLTGCRKSEIRTLKWCYYRNGRNGRKHLFLPDSKTGQKMIYLSDPARAILDKIPRK 303

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
              +  T I ++      D        F   F+   T+AG++    H +R   A+++   
Sbjct: 304 SAWVFPTTIKRKRGRPRKDAVPFFDIDFWNIFR---TRAGLDDVRLHDLRHSYASLAIRN 360

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G +   L    G    +    YT   D
Sbjct: 361 GVSLVTLGRLVGHVDPETTLQYTHLTD 387


>gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B]
 gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B]
          Length = 403

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 110/336 (32%), Gaps = 30/336 (8%)

Query: 37  YPHESTFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
              ++T    Y + L       +   R       +K  TL  + S++ +          +
Sbjct: 70  DSIKATLHRHYQTILERDNYVTAEKVRNVFLGKEEKAKTLLQVFSQHNEQYALKVGKTAT 129

Query: 92  RISFESYF---DQIIRKSGDF-DYRKITTKHI---------RSGVESRKHTPSSAIQFLT 138
           + ++  Y    +++     D  +   IT + I             E+   T ++A++F+ 
Sbjct: 130 QKTYTRYELTKNRLAEYIHDKYNVEDITFREINVVFIEGFYLFIRENYPCTHNTAMKFIQ 189

Query: 139 SMRV--LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             R   LF   +            ++    + + +     + + Q         Q R  F
Sbjct: 190 RFRTVVLFAHNLGLITFNPFGAYKLKFEYVERDFLEQAELDRIYQKTFASKRLEQVRDIF 249

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  Y+GL   D C    ++++ +                     ++LL +     + + 
Sbjct: 250 IFSCYTGLSYVDVCELTPENIKLSFDGNLWI--IKKRHKTSVTSNIRLLDIPKSILQKYD 307

Query: 257 INNDKQK----MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310
                 K    ++  + + + K  AT  G+NK  + H  R   AT+S   G     +   
Sbjct: 308 GKLPNGKLLPVISNQKMNDYLKEIATVCGINKRITFHVARHSFATLSISYGVPIESVSKM 367

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            G   +   + Y K  D      ++    ++ +++ 
Sbjct: 368 LGHTNIRTTQIYAKIIDTK--LSEDMDIFANKLNNR 401


>gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066]
 gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus
           CNRZ1066]
 gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus
           ND03]
          Length = 388

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 111/384 (28%), Gaps = 60/384 (15%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
           + + + + G  +Y            G+++           +                   
Sbjct: 3   INEIKKKDGSTVYRANIYLGVDVITGKKVTTKVTARTKKELKTKAQQAQFDFKANGSTRY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T + L   +  S    ++  N++ + +   +  ++   G+F   K+TT  I+S 
Sbjct: 63  KEVAIETYEELAISWWDSYK-NTVKANTKRAQKGLLNNHVLPLFGEFKLDKLTTPLIQST 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +    ++ ++          +     + + ++ V  + +  NP  +V  P+   +  +  
Sbjct: 122 MNKLANSTNTGEAGAYLHYDKIHALNKRILQYGVVLQVIPTNPANNVVLPRNTQKDKKAK 181

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220
            K         +            +       ++FLL +G R +++       +  +   
Sbjct: 182 VKHFNNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241

Query: 221 ---------------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   I   K    +         +        +   F + 
Sbjct: 242 VHITKTLNYEMKLNSPKSKSGYRDIDIDKQTVTMMKRYQHKQTQEAWKLGRTETVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N+            +AGV N   HG R   A++  ++G    EL    G   +  
Sbjct: 302 IHEYPNSRTLQSRLGTHFKRAGVTNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341
               Y+       L  +N+++  S
Sbjct: 362 TMDIYSH------LSKENAKKAVS 379


>gi|77413793|ref|ZP_00789973.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77160155|gb|EAO71286.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 384

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 55/366 (15%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K ++  G I Y+ +        G  +              A+ +A+        +++ 
Sbjct: 3   VHKYQSTKG-ITYFVKVYLGLNDYGKKKYYTKRGFKTRKAAKAHETAVNHQLNSGTFVHI 61

Query: 64  PRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +   T + L   + ++       + AV +   +      I+   G+     I+    +
Sbjct: 62  TAQTTYTYQELYQRWYEAYKDTVEATTAVKTADLYR---LHILPVFGEKKISIISPLDCQ 118

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM 179
           + +  +  T  +  Q  +    +F++A+   Y+  NP   V  PK K       WT  ++
Sbjct: 119 TFITDKAKTFKNMKQIKSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVNEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ----------------HLQNNI 221
             F +   E    +    F L  YSGLR  +      +                 +  + 
Sbjct: 179 HHFLTIILENEPYKHYALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHA 238

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDK 261
               T+ T ++ ++ L D    +L                                + + 
Sbjct: 239 IEKGTKNTFSVRSIYLDDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYCNRDGEI 298

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
           + ++A   +   K    K  + K S HG R   AT+  + G          G  +     
Sbjct: 299 EPLHADYINNILKRIIRKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQITL 358

Query: 320 ETYTKG 325
           +TY+  
Sbjct: 359 DTYSHA 364


>gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 382

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 104/377 (27%), Gaps = 41/377 (10%)

Query: 1   MTPSLRLPPF---VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  R P     + + +    +   Y  +  G R R      +       +       +
Sbjct: 1   MAPKKRNPNGAGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGST--WEECDTKRQELVLR 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
                    +   L   +  + +        +++   +E++    +I   G      ++ 
Sbjct: 59  DRQGIPTPTRSAKLSEWLPYWLEHYVQSRRKLSTLDKYEAHVRLYLIPMLGTKRLETLSV 118

Query: 117 KHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +R  +       T ++A +    +R     AVR+E +  N    VE P+ K   I PW
Sbjct: 119 ADVRRFIARVQAAQTAATAKEAHRVLRTALTAAVREELITRNVASLVEPPRVKQREISPW 178

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           + ++   F            AF   +  GLR  +        +  +   +  +       
Sbjct: 179 SLKETLSFLEAARRDP-LYAAFMLAICMGLRRGELVGLRWTDVDLDNRVLHVRHQTQRRR 237

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ-----------------------------KMN 265
             L D   K      +      +   +                               + 
Sbjct: 238 GTLYDDDPKSRRRRVVPMPALCVAPLRWHRLKQRETFADTGVTWSESGYIFATRNGRPVE 297

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
                  F   A  AG+     H  R   AT+   AG     +M   G   +      YT
Sbjct: 298 PRNVYRSFTRVAAGAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYT 357

Query: 324 KGA-DRIRLGIKNSRRI 339
               D  R  I +  R+
Sbjct: 358 HVVHDTQREAISHMDRL 374


>gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
 gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787]
          Length = 288

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 28/288 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKIT----TKHIRSGVESR 126
             + YRK      L  ++  S+ +Y         D        +T     + +R   ++R
Sbjct: 4   YFNSYRKMISLRGLTDHTIKSYSTYILAYFDFLTDVIHKSPEDVTWDEMRQFVRWLQDTR 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  +    ++ +R    +      +      +    ++    +     +   +     
Sbjct: 64  SLSDRTMNAVISQLRFFTIYV-----LHKPWDATQLPFRKFDNYLPYVPSQQEVKTFIST 118

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKL 244
               + +     +  SGLR  + C    Q ++     I              L    +++
Sbjct: 119 IPDLKQKAMVSLMYSSGLRIGEVCHLKYQDIERRNMRIHISHGKNRSDRYALLSKTALEI 178

Query: 245 LAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
           L+      +              Q ++    S        + G  +    H  R    T 
Sbjct: 179 LSQYWFAYDKPVDWLFPKQRDKSQPIDTFYLSRHIHEHERRLGWPERITCHSFRHAFGTH 238

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             + GA    + A  G K++     Y        L   +  +  S  D
Sbjct: 239 LYENGADLLTIQAYLGHKSLASTSIYVH------LATNSMHKAVSPFD 280


>gi|168485015|ref|ZP_02709953.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172041868|gb|EDT49914.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+   + G  +Y            G++++          + A          K      
Sbjct: 3   ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGSTVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++   +    +S  +  ++   G++   K+T   I+  
Sbjct: 63  KAVEIKTYAELVENWLETY-CHTVKKATLTIIKSRLNNYLLPAFGEYKLDKLTPPVIQKQ 121

Query: 123 VESRKHTPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +       L S+ + + K+AV  + +  NP   +  P+RK +  +   
Sbjct: 122 VNQWAKEYNQLGKGYQEYPQLNSLNKRILKYAVSLQVIPFNPARDIIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLQNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINNDKQ 262
            KT      +T       ++++ +                          E  F N+  +
Sbjct: 242 NKTLNCEKEVTSPKTKSSIRVIDLDNKTVLMLRLYKNRQAQVGREIGLTYEKVFSNSFDE 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +A       +     +   + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 YRDARALRSRLEKHLKLSDCPRLTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
            Y+  + D  +           ++ S
Sbjct: 362 IYSHLSKDNKKNATSFYEKAIEKLKS 387


>gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 322

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 79/308 (25%), Gaps = 53/308 (17%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              I    +       A  +  ++ ++    IR       + +   H+ + +        
Sbjct: 3   SQFIKSLYEHMMLKRYAKRTIQTYINWISDYIRFHKFQHPKDLDVLHVEAYLTHLSTKRK 62

Query: 132 SAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +A      ++  L     +     +   ++     R+ +     T+ +++         +
Sbjct: 63  NARSTQATALNALVFLYNKYLEQPLPSDMNFVGSGRERKLPVVLTQLEVKALLGR--VPT 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------- 231
              LA   L  SGLR  +  R     +  +   ++                         
Sbjct: 121 HHYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVVTLSESLIPLLKNH 180

Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFINNDKQ--------------------- 262
                      + +PD     +      K        +                      
Sbjct: 181 ISESEKLLQRDLMVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSIDPESKLLRRH 240

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++  Q        ++ AG+  + + H +R   AT    +GA    +    G   V   +
Sbjct: 241 HIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQ 300

Query: 321 TYTKGADR 328
            YT    +
Sbjct: 301 IYTHILQQ 308


>gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 394

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 86/303 (28%), Gaps = 21/303 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              +  +      S    + +    +  T+    I  +R+     +L  +++ +  S   
Sbjct: 77  KKELELWQQGRRISLELLKDVLGTSENKTSF---IPFFRQEVTNSALKESTKRNHLSTLT 133

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFK------WAVRQE 151
            +     D  +  +T + I S     +       +  + +  ++          +   Q+
Sbjct: 134 LLQEFKKDVSFSDLTFEFISSFEYFLQSKGYHTNTIAKHMKHLKRHINVAINKDYMEIQK 193

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           Y      +     K          K +       +++  +   AF F  Y+G+R SD   
Sbjct: 194 YAFRKYKIKTIENKHTHLAPEELEKLERLNLIGRYTKYQKTLDAFLFCCYAGMRYSDFIS 253

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNA 266
               ++               +           L           K    I +     + 
Sbjct: 254 LTPDNIVEIHKET--WLIYKSVKTNTEVRLPLYLLFEKKGLVILEKYQDNIQDFFHLRDN 311

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +      A  AG+    S H  R  +AT+    G     +    G K+V   + YT 
Sbjct: 312 SNVNKDLIILARLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 371

Query: 325 GAD 327
             D
Sbjct: 372 VMD 374


>gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402]
          Length = 426

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 84/304 (27%), Gaps = 57/304 (18%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTS 139
               +  +  ++  +  + IR++ + + + ++   I + V           SS  Q L +
Sbjct: 121 AKHYSKRTMEAYSYWISRFIRENKNKNLKTLSDTEINAFVSRLAVKEKAAASSQNQALAA 180

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  L+K  +          +  ++PK+    +       +         G   RL     
Sbjct: 181 LLFLYKNILGLTIKTPENIVRAKKPKKLPAIMTREETAKIFSLLPENDYGLLIRLL---- 236

Query: 200 LYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP------------------- 238
             +G+R  ++ R  +Q +    N  ++   K        LP                   
Sbjct: 237 YGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKDRKTVLPVSLKFPLQKHLENVRLIHE 296

Query: 239 --------------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                       +  +       +        +  ++ +     
Sbjct: 297 ADCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRT 356

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                 K+G+ K    H  R   AT   +A      +    G   V     YT   +R  
Sbjct: 357 LHEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHVLNRGS 416

Query: 331 LGIK 334
           LGI+
Sbjct: 417 LGIQ 420


>gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1]
          Length = 335

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R        ++ +  ++  +  + +R        ++    + + +          
Sbjct: 22  LLDQVRGRLRLKHYSLRTEQAYLYWIRRYVRAWLPRHPAELDGAAVEAFLTGLATRDNVA 81

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L++       + +    +V R KR        ++  + +        
Sbjct: 82  ASTQNQALAALLFLYR---EVLGIELPWMENVVRAKRPRRLPVVLSRAQVVRLLER--LS 136

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            +  L    L  SGLR  +  R  V+ +       +I+  K G      LP    + L  
Sbjct: 137 GREALMAGLLYGSGLRLMECARLRVKDVDLERNELTIRDGKGGKDRMTVLPGALREALLR 196

Query: 248 T----------------------------PIGKETFFINNDKQKMNATQF---------- 269
                                                                       
Sbjct: 197 QLAEVRLLHARDLACGLGRVHLPHALARKYPNAAAEPGWQYVFPATRISVDPRDGVRRRH 256

Query: 270 -------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +  A +AG +K  + H +R   AT   ++GA    +    G K V   +
Sbjct: 257 HIDEKVLQSAVRRAAREAGFDKPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQ 316

Query: 321 TYTKGADRIRLGI 333
            YT   +R  LG+
Sbjct: 317 IYTHVLNRGALGV 329


>gi|315179062|gb|ADT85976.1| Site-specific recombinase XerD-like protein [Vibrio furnissii NCTC
           11218]
          Length = 411

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 102/360 (28%), Gaps = 42/360 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG---HGRRIRLP---------YPHESTFIPAYMSALTGS 54
           LP  V     + G   +  R      G++  +               T        L G 
Sbjct: 39  LPTGVRCLVGKSGGKRFLLRYTSPVTGKKASIGLGKHPETDLSTLRKTAKEYRQKILEGV 98

Query: 55  TPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            PK E  N    K  TL     E Y   A       + +     +  ++ +         
Sbjct: 99  DPKLERDNQSVDKAMTLARFFDEVYLPLAKQKR---SWKDDAARF--RLAKSIHHISIHD 153

Query: 114 ITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           +T   I       +         + P+S  + L  ++ + + A +    A      V   
Sbjct: 154 LTAADIIKVQMEMQNAVTIKGKPYAPASINRVLALLKTINRQAYKLMD-APLIADKVSLL 212

Query: 165 KRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           K         ++  +++F       E          L  +G R  +        +     
Sbjct: 213 KEDNVRTGYLSESQLKEFIGHALNHEDKSIGAYLVLLFLTGARDKELRLRLKSDVNWEEK 272

Query: 223 S--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATK 279
           +  I   K GT   + L D  + +L   P      ++   ++K          FKA   K
Sbjct: 273 TLTIPHTKNGTSHVLFLSDYMLDILRSVPHVANNPYLFPGRKKGKPVGQPRHAFKAIKAK 332

Query: 280 AGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330
            G+          + H  R    ++ A  G + H++        +     Y+K    R R
Sbjct: 333 MGLPDIPGDKANLTLHSARHTVGSLLASQGVSLHDIAKQLNHADLSSTRRYSKLTVGRRR 392


>gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 342

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 90/308 (29%), Gaps = 43/308 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD--------YRKITTKH 118
           L   +  Y  S      + +++ +++      +       G             +   + 
Sbjct: 7   LHDWLEHYVPSIKA--CSPHTKRNYKISVKLYVEFLRVIKGTTPETLSAECFCMEYIMEW 64

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WT 175
           I    E+R  +P++    L+++RV  K+   ++   ++  L  E    +    R     +
Sbjct: 65  IIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLS 124

Query: 176 KEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           K+ +    S  ++GS    +       L  + +R ++     + ++  +         G 
Sbjct: 125 KQAVDVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGK 184

Query: 232 IITVELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKA 277
                             + L      +                  M+A   +   K  A
Sbjct: 185 GRKKRPIPLLAKPAQCLKRYLIKYHPKQNDANALLFCSKSKGIYVPMSAENVNKMLKKYA 244

Query: 278 TKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
           T A        ++  AH  R   A+   + G    ++    G +++     Y      + 
Sbjct: 245 TMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQE 304

Query: 330 RLGIKNSR 337
              ++   
Sbjct: 305 EKALETLE 312


>gi|93569004|gb|ABF13469.1| DNA integrase [Arcanobacterium pyogenes]
          Length = 360

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 100/343 (29%), Gaps = 40/343 (11%)

Query: 14  ERTRHGKII--YYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            R+ +G      ++R G G +R ++     +        AL          N        
Sbjct: 6   YRSENGTFYSQCFYRDGRGAKRHKVKRGFATEL-----EALMWEKDFLAVHNGTMD--ML 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
               +  Y        +  ++ ++ E     +II   G     +I    +          
Sbjct: 59  FADFVDVYATEIRPR-IREHTWLTKEYMIKDKIIPFFGKMRMSEIKPIDVVRWQNQLIDH 117

Query: 127 ---KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDM 179
                 P SA    T    +  +F  A R   +  NPC    +   +K   +  WTK++ 
Sbjct: 118 KDANGKPYSATYLRTINNQLNAIFNHAERYYDLTGNPCRKVTKMGSKKGGEMNFWTKQEY 177

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------NIF 222
            +F     +      AFE L ++G+RC +                            +  
Sbjct: 178 LRFSEAIMDKPLSFYAFEVLYWTGIRCGELLALTPSDFIFETSELSITKSYQRLKGIDTI 237

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           +                   ++       ++    ++    +     +   +    ++GV
Sbjct: 238 TDPKTPNSVRRIAMPKFLAEEMKEYLEDFRDDLGPHDRIFDVTKYYLTHEMERGCKESGV 297

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   H +R    ++  D G TA  +    G +++D    Y  
Sbjct: 298 KRIRIHDLRHSHISLLIDMGFTALAIADRVGHESIDITYRYAH 340


>gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 349

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 103/347 (29%), Gaps = 36/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           V K+  +  K  +  R     G   R       T   A  +     T   E  +      
Sbjct: 3   VYKD-DKSDKWYFTVRYKDIYGNNKRKLKRGFKTKREAKSAEAEFLTEVNEGYSDSNTYE 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T                L   +R   E+ +   I  K G     KIT +  +   +   
Sbjct: 62  YTF-------YHYLDNSDLRPKTRKRKENEYKLHIKPKFGHIKMNKITQQQCQEFRKYLM 114

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              ++ +SA    +  +V+  +A +   + ++P +S++   R       +   +  + + 
Sbjct: 115 DNINSFNSARTIWSGFKVVINYAKKYFGLRVDPTISIKPIPRTKPKP-NFMMREEFEDRI 173

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVEL 237
              E    R  F  + Y+GLR  ++            + +  N     + ++        
Sbjct: 174 KEVEEQDYRELFTLMFYTGLRVGEAMALVWTDYNKYKKEISINKTMDISNRSIYPRPKTD 233

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNK 284
               +  L        +     +KQ         +F               K  KA  N 
Sbjct: 234 SSEDIVPLPKFINEMLSERYQREKQMNKYFDEQNYFIFGGLAPKHYSHVHKKFNKAFPNY 293

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           S H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 294 SIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.]
          Length = 311

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 109/310 (35%), Gaps = 26/310 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
                R R       T       A+      ++ +   RK       +  +         
Sbjct: 9   WHDKIRHRQGGFMTRT------QAIKAEKEAKKALKINRK----FSEICEKRLMDLKVR- 57

Query: 87  LAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
               +   +   E+    +++  G  +   I  + +   + S+K +P+ A + L  ++ L
Sbjct: 58  ---RTFRYYKENENLIKGLVKIWGGKNV--INREDVEVYINSKK-SPTQANKELKMIKRL 111

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F+ AV ++++  NP  +++      +      +ED+ +F        + R  F  ++Y+ 
Sbjct: 112 FQHAVERDWLETNPAKNIKLLPVSKKRKYIPPQEDIIKFMVS---AGKDRFYFLTIVYTL 168

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDK 261
            R  +      + + ++   +KT+K       E      ++L      + K+  ++    
Sbjct: 169 ARMREINYLKWEDVYSDYLILKTRKARNSDLTERRIPINEILKYILEQLPKKGEYVFCQN 228

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                            +AG+ + S H +R + A+  A+AGA    + A  G       +
Sbjct: 229 NGKPYDCRKRLMAGICKRAGIKRFSFHSLRHYGASKLAEAGAPLTAIQAILGHSRATTTD 288

Query: 321 TYTKGADRIR 330
           TY +     +
Sbjct: 289 TYLQSLGMKK 298


>gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 322

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 80/300 (26%), Gaps = 24/300 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +   + K  T+K  +S   +      L   +   +E +    +  +G    +++T  
Sbjct: 19  DRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHISHFMSVTGAEFLQELTVD 78

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI   + S   +  + +  L  ++          ++ IN   S++             +E
Sbjct: 79  HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDRE 138

Query: 178 DM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230
                           +   +   +  +G+R     +   +H+      ++      K  
Sbjct: 139 INLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------NATQFSIWFKA 275
             I +   D   ++L       +                               +     
Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSK 258

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +   G+   + H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 259 HSRDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 298

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 84/285 (29%), Gaps = 32/285 (11%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT------PSSAIQF 136
                A ++  ++ +    +   +G           +    +           P++  + 
Sbjct: 13  RERGSAAHTVRAYSADLRDLAAHAGRQGVTTSAALDLEVLRDWLWRGSQARLAPATLARR 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSE 188
             ++R    W +R   V  +P + ++ P+  +   R   +E M    +            
Sbjct: 73  SAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQMSALLARLAARAAEDDPA 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAM 247
             +     E L  S LR S+     +  +  +  +++          V       + L  
Sbjct: 133 ALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFGVPAAEALDA 192

Query: 248 TPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAGVNKS----AHGVRKFS 293
                    ++              ++ +        +    A +  S     H +R  +
Sbjct: 193 YVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLVASLL--ADIPGSGPQGPHALRHTA 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           AT   D GA    +    G  ++   + YT  + +R++   + + 
Sbjct: 251 ATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAH 295


>gi|13095681|ref|NP_076573.1| integrase [Lactococcus phage bIL285]
 gi|15672990|ref|NP_267164.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723956|gb|AAK05106.1|AE006335_2 prophage pi2 protein 01, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12830870|gb|AAK08226.1|AF323668_1 integrase [Lactococcus phage bIL285]
          Length = 374

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 99/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       +  N  +IK ++T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +       
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 336

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 37/295 (12%)

Query: 65  RKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIR----KSGDFD----YRKI 114
           RK   +   L+  Y      +  +++  +  ++   F  ++R      G          +
Sbjct: 4   RKTHPSFAVLLQRYFTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDL 63

Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRK 167
            ++ I + ++     R + P S    L+++R    +A   +      I   L++ + +  
Sbjct: 64  DSELILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTALPTIQRALAIPQKRYD 123

Query: 168 TEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNI 221
              +   ++E+MQ            G + +  F  +  +G R S+     V  +    + 
Sbjct: 124 KPLLEFLSREEMQAILDAPNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDGSA 183

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKA 275
                 K     TV L      LL            +           M  +  +     
Sbjct: 184 CIHINGKGRKQRTVPLWRSSANLLRAWRREAGDVAGSAAFFPNRDGVAMTRSNVTQRLAL 243

Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              KA   K        S H  R  +A     +G     +    G ++      Y
Sbjct: 244 YVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNY 298


>gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter
           bethesdensis CGDNIH1]
          Length = 300

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 34/290 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITTKH 118
           +  I  + +       A  +  ++       +                G           
Sbjct: 8   RDWID-WLRDE--KRAAPLTCRAYGDDVAAFLGFLATHQGAEPDMAMLGRLGLSDFRAW- 63

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +    +    ++  + L S+R  F +  ++  +  +    +  PK K    R   +  
Sbjct: 64  -LASEAVKGAGNATRARHLASIRSFFHFLRQRHALENSALPLLRTPKAKPPLPRALDQTQ 122

Query: 179 MQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                    E S       +    F  L   GLR  ++    V     +     T K G 
Sbjct: 123 ALAAARDIGEASENPFTQARDTALFALLYGCGLRLGEALGLMVGD-SQHDTLRITGKGGR 181

Query: 232 IITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN-- 283
              V +       L+               F+     ++N        +   T   +   
Sbjct: 182 QRMVPVIPSVRTSLSDWLRFHPVPEASAPLFVGVRGARLNPGVAQRTLRQFRTLYNLPEH 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            + H +R   AT    AGA    +    G  ++   + YT+      L +
Sbjct: 242 ATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAV 291


>gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 351

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 93/320 (29%), Gaps = 43/320 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS----GDFD---- 110
                 +   +   + ++ +       + + +++ +++      +       G       
Sbjct: 2   KKKINPQAMQIADYLHDWLEHYVPSIKACSPHTKRNYKISVKLYVEFLRVIKGTTPETLS 61

Query: 111 ----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                 +   + I    E+R  +P++    L+++RV  K+   ++   ++  L  E    
Sbjct: 62  AECFCMEYIMEWIIWLKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPN 121

Query: 167 KTEGIRP---WTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +    R     +K+ +    S  ++GS    +       L  + +R ++     + ++  
Sbjct: 122 EKNSKRKVIGLSKQAVDVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVI 181

Query: 220 NIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMN 265
           +         G                   + L      +                  M+
Sbjct: 182 DCVKPHIIVIGKGRKKRPIPLLAKPAQCLKRYLIKYHPKQNDANALLFCSKSKGIYVPMS 241

Query: 266 ATQFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           A   +   K  AT A        ++  AH  R   A+   + G    ++    G +++  
Sbjct: 242 AENVNKMLKKYATMAHERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQT 301

Query: 319 AETYTK-GADRIRLGIKNSR 337
              Y      +    ++   
Sbjct: 302 TMVYLDITTKQEEKALETLE 321


>gi|281491502|ref|YP_003353482.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375220|gb|ADA64733.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 374

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 98/353 (27%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRVLNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +  +      
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKLLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       +  +   IK  +T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDINFDNNVIKCHRTWNYRNKVGGFKKTK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +       
Sbjct: 242 TDAGIRDIIIDDESMQLLKDFREQQKKLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 391

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 108/370 (29%), Gaps = 54/370 (14%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + + G+                         A    +     +            TL  
Sbjct: 12  YKDKQGRWRAVISIPSVDGPPKRRYIYGQTRKAVADKMHIILNQIHTNTYIEPCKVTLYE 71

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            +  +        + + + +++++Y    I    G +    + T  ++S    +      
Sbjct: 72  WLCTWLDQYCKIEVKLTTYVNYDTYVHRHIKNTIGGYKLCDLNTSIMQSFFNEKAENGKL 131

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 +P +       M      AV  + +  NP   V  PKR+   +R  T ++ ++ 
Sbjct: 132 HSSGGLSPKTIKNMHDMMHRALDKAVHLDMIIKNPTDFVTLPKRRKSEMRFLTIDEQKK- 190

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------- 226
                +G +  +     LY+G+R  +      +++                         
Sbjct: 191 LQEALKGDRLEMPVLLALYTGMRQGEIFGLKWKYVHIESTDRAWLRVVQAVNRFSNRTDD 250

Query: 227 ------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------- 263
                       +   +I T+ L     + L      +E  F +N               
Sbjct: 251 GKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTEYKCEQEQHFKDNGLPMSEMVFTTKNGN 310

Query: 264 -MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            ++   F   FK    + G++  + HG+R   AT + ++G     L    G  +V    +
Sbjct: 311 LVDPRNFQRDFKLLLKRNGLHEINVHGLRHTFATRALESGMNVKTLSKILGHSSVAFTLD 370

Query: 321 TYTKGADRIR 330
           TY    + ++
Sbjct: 371 TYAHVTEDLK 380


>gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
 gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855]
          Length = 409

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  ++   R           A  +  +++     +           D  + ++T + I
Sbjct: 108 MTLMKMLDAVRDEVKSRIGIDRAKGTYPAYDYTCRTMREFIEAKFKTKDLAFGQLTEQFI 167

Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                   + + H   +A  +L  ++   + A ++ +           PK+  +  +  +
Sbjct: 168 HDYENFILDEKGHAVDTARHYLAIVKKSCRKAYKEGHSERFMFQHYVLPKQTVKTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E  ++ +       +      R  F F  Y+G+  SD+     ++L  +       K  
Sbjct: 228 RESFEKIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTITKENLHTDEDGKLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
                      +KLL               N     ++        KA A  AG+ ++  
Sbjct: 287 -RRKKNELRASVKLLPEAVDLIEKYHDDERNTLFPMIHYPSLRNHMKALAVLAGIKENLC 345

Query: 287 -HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   +AG     +    G   +   + Y +   +     ++  R+
Sbjct: 346 YHVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKK--LFEDMDRL 398


>gi|167036524|ref|YP_001664102.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114956|ref|YP_004185115.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855358|gb|ABY93766.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928047|gb|ADV78732.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 403

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 127/392 (32%), Gaps = 70/392 (17%)

Query: 18  HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLK 72
            GK      Y    G+G+R       E          L     + +    P  +   T+K
Sbjct: 13  KGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVK 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             + ++ ++    SLA+ +   +E      I    G++   K+T   I++   +      
Sbjct: 73  DYLKKWLETKK-SSLALKTYNDYEQKIRLYINPAIGNYKLLKLTPLIIQNMYNNMLEQGL 131

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +     T +    K A++ + +  NPC     PK+  + ++  T E  ++F      
Sbjct: 132 SARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEACVY 191

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HLQNNIFSIKTQKTGTI 232
             +  + FE LL SG+R S++     +                 ++NN    + +   + 
Sbjct: 192 N-RWGILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSR 250

Query: 233 ITVELPDGFM------------------KLLAMTPIGKETFFINNDKQKMNATQF----- 269
            T+ LP   M                  + +       +      +++  +   +     
Sbjct: 251 RTIPLPREVMNDLKEHRKQQSKEKLKAKEYINYDKDKNKFKPEEWEEKLKDPKVYVDYGL 310

Query: 270 ----------------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
                             +FK     AG+     + +R   AT+   AG     +    G
Sbjct: 311 VFATETGRPLDLANINYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLG 370

Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
              +    +TY+       +  + ++++  ++
Sbjct: 371 HANITLTLDTYSHVLPT--MQEEATQKLKQML 400


>gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 280

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 18/259 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L  EY +       + N+   +     + +      D  ++T + +    E     +  +
Sbjct: 13  LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYI---DGEEVTKELVIGFKEYLVEHYAVN 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    + S+    ++A  QE+         ++ +      +  TK++  +         +
Sbjct: 67  SVNSIIASLNRFMQFAGWQEFRVK---QLKKQRQVYCPEEKELTKQEYFELIRTAKREGK 123

Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAM 247
            +  L  + +  +G+R S+     VQ ++N +  +  +     + +        M  +  
Sbjct: 124 EKIGLIIQTIGSTGIRISELPSITVQAVKNGVAEVDCKGKNRQVLLPRKLLVKLMYYIRK 183

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
             I     FI      ++ +      K     AGVN+     H +R   A          
Sbjct: 184 EHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDI 243

Query: 305 HELMATYGWKTVDQAETYT 323
            +L    G   ++    Y 
Sbjct: 244 AKLADLLGHSNINTTRIYI 262


>gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 320

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 31/270 (11%)

Query: 90  NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143
            +R ++++         G     D+R++T  H+ +   + +      ++  + L ++  L
Sbjct: 40  RTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASL 99

Query: 144 FKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196
           F   +    +        +   + +              +       E    G + R   
Sbjct: 100 FDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKGLRDRAML 159

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDGF 241
             LLY GLR  ++ +  V  +Q        +  G                 I   L    
Sbjct: 160 AVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHWYLERSG 219

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
             L         +    +    ++A       +A   KAG+       HG+R  +AT + 
Sbjct: 220 HHLDDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRATAATNAL 279

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++ A  G   +   + Y +  +R
Sbjct: 280 EHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9]
 gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9]
          Length = 343

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 93/330 (28%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFSTKGEALAFERHTMEETEAKPWLGESMD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                     +P +     + +  +F    R  E+   NP  ++ +     + +   T E
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + +  +    +     L  +  L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKCQNPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 433

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 63/313 (20%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES 125
              +I + R+       + ++  ++  +  +      D          + +  +R+ +  
Sbjct: 105 FNAVIDKLRELIRLKHYSYSTEQTYIEWAKKFHTFILDSKGIKFEIDTLDSNDVRNYLSY 164

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                + + S+  Q  +++  LFK  +  E   +   +  +R    T+     T ED+Q 
Sbjct: 165 LALKQRVSSSTQNQAFSALLFLFKNVLNVELGDLGDTVRAKR---GTKLPVVLTVEDVQ- 220

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPD 239
            + F     +  L  + +  SGLR  +  R  V+ +    N+  +++ K     +  LP+
Sbjct: 221 -ELFKQVKGRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRSTMLPE 279

Query: 240 GFM----------------------------KLLAMTPIGKETFFINNDKQKM------- 264
                                            L          +               
Sbjct: 280 FVKPELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSERLSVDL 339

Query: 265 ----------NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312
                     +        K    KAG+  N S H +R   AT     G    E+    G
Sbjct: 340 RSGKIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREVQDLLG 399

Query: 313 WKTVDQAETYTKG 325
            K ++    YT  
Sbjct: 400 HKNLETTMIYTHV 412


>gi|56807895|ref|ZP_00365725.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|209558929|ref|YP_002285401.1| Integrase [Streptococcus phage NZ131.1]
 gi|209540130|gb|ACI60706.1| Integrase [Streptococcus phage NZ131.1]
          Length = 381

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 107/375 (28%), Gaps = 48/375 (12%)

Query: 11  VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + + + ++G I+Y         +    +            +               Y  +
Sbjct: 3   IIEYKKKNGTIVYRANIYLGIDQVTGKKAKTSVTGRTRKEVKQKAKHAQDEFISNGYTVT 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                   + L   + +S     +   +   +    ++ +I   G     K+T  +I+  
Sbjct: 63  KVVPIKNYQELAELWLESYQLT-VKPQTFIATKRMLYNHLIPIFGTMKVDKLTVSYIQRF 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
           +    +         +  R + ++ V  + +  NP   V  PK   +  +          
Sbjct: 122 INDLLNQLVHYGVVHSINRRVLQYGVSLQLLPFNPARDVMLPKVPKKENKAIKFIAPEDL 181

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 M++  +         + +  LL +G R  +        +     +I   K  + 
Sbjct: 182 KALMAYMEKLANKKFSYFFDYVLYSVLLATGCRFGEVVALEWSDIDLENGTISITKNYSR 241

Query: 233 ITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNATQFSIWFK----- 274
           +   +     K              L      ++         +++A  FS   K     
Sbjct: 242 LLKLIGTPKSKAGVRVISIDKKTINLLRLYKNRQRQLFIETGARVSAVVFSTPLKEYQNM 301

Query: 275 --------AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                    + T+ G+ + + H  R   A++  +AG +  EL    G  T+      Y  
Sbjct: 302 ATRQESLDRRITEVGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYGH 361

Query: 325 -GADRIRLGIKNSRR 338
              D+ +  +    +
Sbjct: 362 LSMDKEKEAVSYFEK 376


>gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens]
          Length = 317

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 65/297 (21%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  S+  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIERL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242
             SGLR S+  R  +Q +       +++  K        L                    
Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLAAYINKAMEIQH 190

Query: 243 ------------KLLAMTPIGKETFFINNDKQKMNATQF-----------------SIWF 273
                         L                     T                       
Sbjct: 191 SDNQQGIGHALPNALERKYPNAFKQHGWMFIFPSTTTSINPYTGTLCRHHLHQSVIRKVL 250

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   + K  + H  R   AT    +G+    +    G   V   + YT    +
Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503]
 gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 315

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 86/293 (29%), Gaps = 29/293 (9%)

Query: 74  LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRK 127
           L + + +     +  +  +  ++    D+    +     G+ D   I             
Sbjct: 15  LTAAFLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADFRAFLA 74

Query: 128 HT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TK 176
                   P +    L++++ LF++  R+      P  ++  PK      RP        
Sbjct: 75  DRRAEGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQAPALA 134

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                  +      + R  F  L  +GLR S++     + L     S++    G  +   
Sbjct: 135 LAEAAEHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRDV 194

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NK 284
                ++    T +      I  +              +        + +    G+  + 
Sbjct: 195 PLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDDA 254

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           + H +R   AT    AG     L    G  ++   + YT+      L +  + 
Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAA 307


>gi|319935664|ref|ZP_08010095.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
 gi|319809322|gb|EFW05757.1| hypothetical protein HMPREF9488_00926 [Coprobacillus sp. 29_1]
          Length = 356

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
            K L   Y +S     L   +  S E  Y +++  + G+ D   IT   +R   +   + 
Sbjct: 3   FKELYCVYIESVQL-ELKRTTIDSIEYRYKNRLDERFGNLDIESITIDMVREYQKEMLYQ 61

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--MQQFK 183
              +     + +  MR +    V +  V  N  + +++ K +    +     D  + +  
Sbjct: 62  DNLSAEYINRIIGIMRQILDCGVTRNLVKENVLVKIKKVKDQYRIDKKQVIWDLDVFRTF 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKT 226
             +      +L F  L + GLR  +       ++                          
Sbjct: 122 DSYIADDMDKLLFNMLYFLGLRKGELLSLKWSNINFEKKIVNVISTAVQIVGKGQIVTTP 181

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATK 279
           +   +I  + + D   ++L+                +I    + ++ +            
Sbjct: 182 KTNHSIRGICMNDTLFEMLSNYYFKMKLQYDVVNHLYIFGSNKMISFSALDRKLAKYLKL 241

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD--RIRLGI 333
           +GV K + HG R   AT+ A        +    G ++VD     Y    D  +  L  
Sbjct: 242 SGVEKINLHGFRHSHATMLASLTTDIKSISDRLGHESVDVTLNEYIHSNDFAQKELAD 299


>gi|144899499|emb|CAM76363.1| phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 427

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 124/390 (31%), Gaps = 49/390 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHES------TFIPAYMSALT------ 52
           LP F  +      +  +   +  G+  R+ +            T   A   A        
Sbjct: 29  LPAFGVRLSHAGTRSYFVMTRVGGKVARLTIGKAKARDDSPGLTLAEARKRAGELTEQAG 88

Query: 53  -----GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS 106
                    K E   +  K   T +     + +      LA ++++ ++     Q     
Sbjct: 89  IGHDPRQIKKAEKQVNEEKAANTFRVAAERFMRQHVEPRLAASTKMDYKWALFGQDTAAW 148

Query: 107 GDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            +     IT   +R  +++   + +P+ A + L  +   F W   ++ + + P + ++ P
Sbjct: 149 ANKPVDSITRADVRRALDATIERGSPAGANKLLAYLSKFFNWCAERDLLEVPPTIRIKPP 208

Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
             K+ G R     ++    + +  EG      F+ LL +G R +++    +  + +    
Sbjct: 209 SPKSVGERTLNHAEVADVWAAFEAEGGLFCDLFKLLLLTGQRRTETAGMRLSEISDLDGE 268

Query: 224 IKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQFSI----- 271
               +     T              + ++   PI  +  F+         + +S      
Sbjct: 269 KPVWEIPGNRTKNSRPHAVPLSPQVVAIIKGRPIVGDLGFLLTTTGTTGTSGYSNAKERV 328

Query: 272 --WFKAKATKAG----VNKSAHGVRKFSATISADA-GATAHELMATYGWKT----VDQAE 320
             W   +  +AG       + H +R+   T+  +  G   H + A     +       A 
Sbjct: 329 DAWIAKRREEAGEQPMPRWTLHDLRRTMVTMMNEHVGIAPHVVEACVNHVSGMAKAGVAG 388

Query: 321 TYTKGA---DRIRLGIKNSRRISSVVDSDD 347
            Y K     DR R     +  +  ++   D
Sbjct: 389 VYNKALYMDDRRRALEAWAAYLDGIISPKD 418


>gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 385

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 106/364 (29%), Gaps = 50/364 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           + G  +R               +S L       +    P     T + +  ++       
Sbjct: 26  QTGKEKRTTRRGFKTRKEARLALSMLELQADSGQLDQQPIN--LTFEDVYQQWWAGY-IN 82

Query: 86  SLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVL 143
           ++  ++     + + + I+   G +  R ITT  +++ +    K T  S   +      +
Sbjct: 83  TVRESTMYKQKKVFQNHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAI 142

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFL 199
           FK+A+ Q Y+  NPC  V  PK+  +       +  Q    F              F  L
Sbjct: 143 FKYAILQGYIKDNPCTRVTMPKKLDKEDTLNFWDKDQLKTFFNGIDPVNDLEKYTLFRVL 202

Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII---------------------- 233
            ++G+R  +        L         +                                
Sbjct: 203 AFTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTL 262

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAG------ 281
                   +     L +     ++  +     K         S W +A    A       
Sbjct: 263 LYLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKSLNTPSKWLRALIDDANKSGANL 322

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
            + + HG R   A+    AGA+  E+    G +        YT   +  + G +  +++ 
Sbjct: 323 PSITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTE--KQGQEAVQKLV 380

Query: 341 SVVD 344
           + ++
Sbjct: 381 NFLN 384


>gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
 gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera
           watsonii WH 8501]
          Length = 279

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 12/258 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128
             LI+ +         +  +R  ++S   Q IR  G     ++  + I      +E + +
Sbjct: 11  SELITTWLLHQS----SKLTRQHYQSNIKQFIRFIG-LSLEEVKIEDIHGFVRMLELKGN 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PS+    L++++ LF +A +  Y+  N  + V+ PK          + +  +     + 
Sbjct: 66  KPSTIKGKLSTVKSLFSFAYKVGYLTSNVAVLVKSPKVNKRIASMRIENEDIRKMVDGTN 125

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLA 246
             + RL  + + + GLR S+  R    +   N   I  +          E     +  L 
Sbjct: 126 SKRDRLIIKMMYFLGLRVSEVLRLKWSYFYQNKVFISGKGNKERSLNLPEELFLELSELK 185

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304
                   F      +++     +I       + G++     H  +   +  S D G   
Sbjct: 186 SEFNPTFVFTAYQRDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFKHEHSMTSLDNGCDI 245

Query: 305 HELMATYGWKTVDQAETY 322
           H L  + G  +V   E+Y
Sbjct: 246 HLLSRSLGHSSVSITESY 263


>gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W]
 gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W]
 gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W]
 gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11]
          Length = 350

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 87/328 (26%), Gaps = 36/328 (10%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK I   Y     GRR+R           A+   +   T  + ++        TLK ++ 
Sbjct: 9   GKWICECYPAGRSGRRVR-KQFATKGEALAFERHIMEETEAKPWLGESVD-RRTLKDVVE 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR------- 126
            + K      L   S  + E  +D++I      G+     +T+K      + R       
Sbjct: 67  LWFK------LHGKSLTAGEHVYDKLILMVEALGNPLATDLTSKMFAHYRDKRLTGEIYF 120

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   +P +     + +  +F    R    +    L   R     E    W   +  
Sbjct: 121 SEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQI 180

Query: 181 QFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                  +   P LA      L +G R  ++       +     +    K     ++ + 
Sbjct: 181 VELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPIS 240

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + +                       F    +  +      +  H +R   A    
Sbjct: 241 KELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFM 292

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
            +G     L    G   +     Y   A
Sbjct: 293 MSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7]
 gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7]
          Length = 326

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 19/247 (7%)

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           ++    + R++  S+  +  TS++  + + A + + +  +  +S+E P  K    +  + 
Sbjct: 82  YMVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKRALPKYLSL 141

Query: 177 EDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233
           +++Q+           +        L  G+R S+ C   +  +     +++   K     
Sbjct: 142 DEVQKLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDISFENKTLRLMGKGKKER 201

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGVN- 283
            + L +  +  +      ++ + +  +         K +++  +     +     AG+  
Sbjct: 202 IITLNNNCLDAIEKYLPYRKNYEMAQNEKALFLSSRKNRLSRRRVQKIIEECIMDAGLKN 261

Query: 284 --KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              + H +R  +AT+  +  G     +    G ++    E YT               + 
Sbjct: 262 TGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEK--MKNTMDVME 319

Query: 341 SVVDSDD 347
            ++   D
Sbjct: 320 DLLKKKD 326


>gi|239983801|ref|ZP_04706325.1| integrase [Streptomyces albus J1074]
 gi|239983807|ref|ZP_04706331.1| integrase [Streptomyces albus J1074]
 gi|291455603|ref|ZP_06594993.1| phage integrase [Streptomyces albus J1074]
 gi|291455609|ref|ZP_06594999.1| phage integrase [Streptomyces albus J1074]
 gi|291358552|gb|EFE85454.1| phage integrase [Streptomyces albus J1074]
 gi|291358558|gb|EFE85460.1| phage integrase [Streptomyces albus J1074]
          Length = 385

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 111/368 (30%), Gaps = 46/368 (12%)

Query: 15  RTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R + G+     Y     G R+R      +         L     +         +  +L 
Sbjct: 14  RRKDGRYQGAAYVTNTDGHRVRKFVYGST--YDEAAEKLGKLQEQERNGVPVPSRTWSLG 71

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
             ++ + +     +   N+ + +ES     ++   G     ++T   +RS +   K T  
Sbjct: 72  EWLAYWLEHIVKPNREHNTYVKYESKVRLYLVPHLGMKPMARLTPAQLRSFMAELKRTEV 131

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P++  + L  +R     AVR+E +  N    V+ PK   +  +PW+  +   F    + 
Sbjct: 132 PPAARFEVLRVLRNALNRAVREELLTRNVAELVDMPKVTKKEAKPWSAREAIAFL-RSAR 190

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----------- 237
             +   A   +L  GLR S+      Q +  +       K    +               
Sbjct: 191 AHRLYAACVLVLVLGLRRSEVLGLRWQDIDFDQRQFTPLKQVQRVKGIGLVLKDLKTESS 250

Query: 238 ------PDGFMKLL-----------------AMTPIGKETFFINNDKQKMNATQFSIWFK 274
                 P+   + L                      G++  F +     ++   FS  F 
Sbjct: 251 HAVLPLPEFCARALKERRELQDLERRIVGDAWSQEAGQDLIFSSERGGPIDPVGFSRTFN 310

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRL 331
           A   +AGV + +    R    T+ A          A      +      YT    D  R 
Sbjct: 311 ALVKRAGVRRITVRLARHTCGTLLAFLKVHPKVAQAILRHSQISMTMDVYTHVVGDGERE 370

Query: 332 GIKNSRRI 339
            +     +
Sbjct: 371 AVTMLAEL 378


>gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC
           29328]
 gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328]
 gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 326

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 85/303 (28%), Gaps = 47/303 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107
           P  L   +  Y ++      + N+   +    + +I+                       
Sbjct: 5   PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVKIDSS 61

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159
           D D        +            +            +S+R  +K+ +    + I NP  
Sbjct: 62  DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++ PK+        T ++                 S+        L  G+R S+     
Sbjct: 122 LLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKSRDYCITVLFLNCGMRLSELSSIN 181

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268
           + H++ N       K     TV L D  +  +      +     +       + +M+   
Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDNDALFISKKRNRMSNRA 240

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
                +      G +    S H +R  +AT+    G      L    G ++V   + YT 
Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 325 GAD 327
             +
Sbjct: 301 VDN 303


>gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9]
 gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9]
          Length = 359

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 98/350 (28%), Gaps = 27/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++     +    +R   G++         T   A ++A    T              T+
Sbjct: 4   YRKLDSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAETDLNTLTADLLD--ITV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +        +   +  ++   F  I    G    + IT    +  +       +
Sbjct: 62  LDYNKRWADIYKRPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGEKVA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKS 184
             +  +F   ++   K A+R   +  N        S +  K ++E     ++       +
Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADEAIVRSQKPAKEESEKFMEESEYLAFIKTA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229
                    L    +  +GLR +++     + +  +                    T+  
Sbjct: 182 KEKIKYPSYLTTYIIAITGLRFAEAQGLTWKDIDFDNGYVDVNKTFDYSISQNFRPTKNE 241

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +I  V + +  ++LL             +      +   +   K      G N + H +
Sbjct: 242 QSIRKVPIDNNSVELLKYFKDNHYQDNKLSRICFGASNNATN--KVIKRVTGRNLTNHSL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
           R   A+     G     +    G + ++   + Y    + ++    +  +
Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 349


>gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 84/271 (30%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++               D+R++T  H+ +     +      ++  + L ++  
Sbjct: 36  PRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 95

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    V        +   R +              +       E    G + R  
Sbjct: 96  LFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAM 155

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++ +  V  +Q        +  G                 I + L   
Sbjct: 156 LAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHMYLERS 215

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L+        +    +    ++A        A A KAG+       HG+R  +AT +
Sbjct: 216 GHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRATAATNA 275

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 276 LEHEADIAKVQAWLGHANISTTKIYDRRENR 306


>gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 405

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/401 (10%), Positives = 108/401 (26%), Gaps = 73/401 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T   +  E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLEKLTFHDVCDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
           + +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKKDNI 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 NYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N+                ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
                +    G        E YT   D+  +      ++  
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 401


>gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973]
 gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973]
          Length = 392

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 16/254 (6%)

Query: 91  SRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           +  S+    +  +   GD       +T +         K      SS  Q L  +  L  
Sbjct: 126 TCRSYHRQLELFVESKGDSDIPLTTLTMEFFEDYRIHFKRKGYALSSTKQNLFWLSRLMY 185

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYS 202
            AV Q+ +  NP    +  + +   IR  +K D+ +  +   +  Q    R  F F +++
Sbjct: 186 RAVSQQTIRYNPFEEAKYERVER-KIRCLSKTDIARLLAMPLQNEQAEFVRRLFLFSVFT 244

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAMTPIGKETFFI 257
           GL  +D  +     +Q N   I+  +             L     ++L++ P+  +    
Sbjct: 245 GLAFADVSKLRYCDIQTNNAGIRYIRQDRKKTGVESITPLHPIAEQILSLYPLKDKKEDS 304

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                 M+  Q  +  KA     G+    S H  R    T++ +AG     +    G  +
Sbjct: 305 PIFATSMSRIQIGMHLKAIGLACGIRQPLSFHVGRHSFGTLTLEAGVPIESIAKMMGHAS 364

Query: 316 VDQAETYTKGADRI 329
           +   + Y +  D  
Sbjct: 365 IASTQIYAQITDSK 378


>gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 330

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRK 127
           + L+  +  +         +   + S  +Q+ +K         TT+ IR+         K
Sbjct: 53  ERLLEIFLSAKQVEGCTTPTIKYYGSTINQLFKKMPKK-VTNYTTEDIRAYLAVFQRKHK 111

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +           F W   ++Y+  +P   + + K  T+     T E+++Q      
Sbjct: 112 SSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHKVKTGTQIKEVLTDENLEQ-LRDNC 170

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA 246
              +     + L  +G+R  +  +   + +  N    I   K      V         L 
Sbjct: 171 TRVRDLAMIDLLASTGMRVGELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQ 230

Query: 247 MTPIGKETFFIN------NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
                ++               ++  +      +     + +     H  R+  AT++ D
Sbjct: 231 QYLAERKDRNKALFVSLAKPHNRLQISGVETRLRKIGRLSKIVRVHPHKFRRTLATMAID 290

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    ++    G   +D    Y 
Sbjct: 291 KGMPVEQVQKLLGHVKIDTTMHYA 314


>gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
 gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185]
          Length = 307

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 81/306 (26%), Gaps = 34/306 (11%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T   +   +  +     +  ++  +++      ++ + G      IT K ++  V  +
Sbjct: 4   KKTFHEVSEIWCDAKRPI-VKHSTLCAYQLTLQTHLLPRFGA--AENITEKDVQQFVIDK 60

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +     +    +  ++ + K+  +               + + +     +    +   
Sbjct: 61  CTSGLARKTVRDIVAVLKSVIKYGNKHGIFHFEEWEIEYPTQTENKLPPTLSLNHQRILM 120

Query: 184 SFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----- 237
               E  +   +     L +G+R  + C    + +     ++  Q T   I         
Sbjct: 121 RHLLEQPTPQNIGVLLALCTGMRIGEVCALKWEDVDFAQKTVIVQHTVGRIYNCELKSTE 180

Query: 238 ------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                                F  L  +    +  + +    Q      +  +F     +
Sbjct: 181 RVHSSPKTKNSCREIPISKQLFQALKMVRKQSQSPYVVGTSIQSKEPRSYRDYFGRLLKR 240

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336
             +     HG+R   AT   ++      +    G   V      Y     ++ +  I   
Sbjct: 241 LDIPHLVFHGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKKRCIDRM 300

Query: 337 RRISSV 342
                +
Sbjct: 301 SNFLGI 306


>gi|270157652|ref|ZP_06186309.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
 gi|269989677|gb|EEZ95931.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
          Length = 409

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 117/367 (31%), Gaps = 32/367 (8%)

Query: 10  FVTKERTRHGKIIYYFRK---------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            +    T     IY ++          GH   + L       FI   +   TG  PK   
Sbjct: 28  GIFIYPTGSKTWIYRYKIDDKKDYMIIGHYPEMSLAEAK-KKFIDLRVIRRTGINPKLVT 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                +   T+K  I  +  +          +   +     II   GD + +KI TK I 
Sbjct: 87  KKEEEQAKYTVKEFILNWYTNYIERHRKQ-PQQIKQHINADIIPSLGDIELQKIQTKDIT 145

Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWT 175
             ++   ++ +P  A + L++++  F +AV +  +AINP +++       ++    R  T
Sbjct: 146 KELDKIVKRGSPVHANKVLSTIKQAFNYAVSRGELAINPAVNIRARDIGGQEKPRDRFLT 205

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            ++++    F +                 L +G+R  +   A                  
Sbjct: 206 LDEIKILWEFLNSDLSAISLQIKNSLKLLLLTGVRFGELRIAKWSEFDFQNSMWTIPAKN 265

Query: 231 TIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           T   + +     +L       L     G+      +    ++             +  + 
Sbjct: 266 TKTGIVMHVHLTELVISILKELYNCSEGEYVISGADGINAISDKALPKAVIRIQDRVNIP 325

Query: 284 -KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
             + H +R+  AT   +A       +    G K      TY K     + +  ++    +
Sbjct: 326 QWTPHDLRRTFATQLGEALNIDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALERWSTL 385

Query: 340 SSVVDSD 346
            S + ++
Sbjct: 386 ISNLINN 392


>gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185]
 gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185]
          Length = 322

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 81/300 (27%), Gaps = 24/300 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +   + K  +++  +S   +      L   +   +E +    +  +G    +++T +
Sbjct: 19  DRKLERKQVKGLSIEKALSTVIRQMRATGLRDRTISDYELHVGHFMSVTGAQFLQELTVE 78

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI   + S   +  + +  L  ++          ++  N    V+             +E
Sbjct: 79  HIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEFNFWKGVKIKVDSPVKEGATDRE 138

Query: 178 DMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTG 230
               F           +   +   +  +G+R     +   +H+      ++      K  
Sbjct: 139 INLLFSVLDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNH 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------MNATQFSIWFKA 275
             I +   D   ++L       +        +                      +     
Sbjct: 199 ESIHLPFDDVLARVLGALMKQNDIIRKECHVKNDYLFITKNGGRIATSPTNNNITKRLSK 258

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +   G+   + H +R+  A      GA    +    G   +     Y    D+  +   
Sbjct: 259 HSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
 gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM
           16841]
          Length = 404

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 79/288 (27%), Gaps = 27/288 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
           L  L SE+ K+      + ++         +        G  D++ +T   I + + S  
Sbjct: 112 LHDLFSEFLKAEEHRHFSESTMKQLRGRLMRFHDYLYDIGIRDFKSVTGSIINTYILSLA 171

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           +++ +   + L  +R L  +     ++       +   K   +   P T  D +  K   
Sbjct: 172 RYSTTYVSESLREIRRLLTFGYENGFIDTPLSDFIPHVKNIRQQKIPSTFTDTEIEKILN 231

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIIT 234
                   G +    F      G+R SD       ++                     + 
Sbjct: 232 SVDRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWDDKLISFCQQKTGHALSLPLP 291

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKSA------ 286
            ++    +  L           I                    +   AG+N +       
Sbjct: 292 DDVGWAIIDYLKNGRPETNVKNIFVSHMYPYGELHSLGNVIPRQMRTAGIN-TPANKRTG 350

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H  R   AT   +   +   +  T G   +   E Y +     +L +
Sbjct: 351 MHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLR-ISIKQLAL 397


>gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 355

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 97/336 (28%), Gaps = 54/336 (16%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-------- 99
            + L             +++   L  L   Y  S      ++N+  S+++          
Sbjct: 12  EAKLLPEDKTNAPKIPSKRQNAILTDLAD-YLIS--AKGYSLNTIRSYQNDLIQFFRFLR 68

Query: 100 ------DQIIRK----SGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRV 142
                 D+            D+  ++   +             R +  ++  +   ++R 
Sbjct: 69  RRFGQVDRDCPFEAIDISPIDFSLLSAVQLADIYAFLGYASVQRGNGNTTRKRKTAAIRA 128

Query: 143 LFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFL 199
           L+ +      +   +P  ++E PK K       T ++     +     ++ R        
Sbjct: 129 LYHYLTVVLQLDMSDPTQNLEVPKIKQRDPIYLTLDEAMSLLNAIDGRNKERDLAIVTLF 188

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L  G+R S+     ++ +Q+    I  +       V L D  +  L      ++      
Sbjct: 189 LNCGMRLSELTNLRLKDIQDETLHIVGKGN-KERDVILNDACVNALEAYYPIRKQQIERI 247

Query: 260 DKQ------------------KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
           + Q                   ++             KAG++    + H +R  +AT+  
Sbjct: 248 EAQSDKVVKVDDHLFLSSRGRGISNRMVEGMVHKYILKAGLDANKITVHKLRHTAATLMY 307

Query: 299 DAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             G      L    G + V   E YT   D      
Sbjct: 308 KYGQVDIRTLQKVLGHENVSTTEIYTHIEDDDVRAA 343


>gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 340

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 90/292 (30%), Gaps = 36/292 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125
            TL+   + Y       + +  +   +            + G     +++   + +    
Sbjct: 19  QTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERGLTQAAQVSLAVLEAYQRH 78

Query: 126 RKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW- 174
                              + LTS+R+LF+W +++ ++  NP   +  PK +        
Sbjct: 79  LHGYRKADGKPLAQGGQLNR-LTSIRMLFRWLLQRHHILYNPAEQMTLPKAEKRLPAQIL 137

Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               T+  M    +    G + R   E L  +GLR S+     +  +      +   + G
Sbjct: 138 SEEETEAVMDAQDTETLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVV-RQG 196

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA--------------K 276
                 +    ++ L       +        +  +   F   +                 
Sbjct: 197 KGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGALFVTIWGKTLGRATLTILAGSAI 256

Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 257 REQAHLKKAGACHVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVA 308


>gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 382

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 120/375 (32%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYALETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIDVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQKNKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIK 225
             +      +E  Q ++ F  LL SG+R  +        +            + +    K
Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLAEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLLREGIILRDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 IFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADLMDKLIENL 382


>gi|239624725|ref|ZP_04667756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521111|gb|EEQ60977.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 296

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 30/283 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
               I  Y +S     L   ++ +     D +I          +I    +R         
Sbjct: 3   FVDFIEIY-QSDACSRLKKTTQANKRFLIDSKITPYFVKLPLSEIKPTDVRKWQNELMAL 61

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDM 179
                  ++ +        +  +F +AV+  ++  NPC       +K+   +  WT E+ 
Sbjct: 62  KDEKGKGYSETYLKTINNQLTSIFNYAVKFYHLPENPCHLAGSMSKKSATPKEFWTPEEF 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            +F     E  +    F  L ++G+   +        +      I+ +K           
Sbjct: 122 NKFIVALKEAPESYTMFMLLYFTGIHEGEMLALTPLDIDFERSIIRIEKNYQCVDGEDYI 181

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                     TV +P+   K LA           ++       T+          K+GV 
Sbjct: 182 TSPKTHKGNRTVVMPEVIKKCLADYMEQVYGLKPDDRLFPYYKTKLYKDMNKACKKSGVK 241

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           K   H +R    ++  D G +   +      + V    E Y+ 
Sbjct: 242 KNRVHDIRHSHTSLLIDMGCSPLLVAERLCHERVSTTTEVYSH 284


>gi|168483748|ref|ZP_02708700.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042819|gb|EDT50865.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 388

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 114/386 (29%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+   + G  +Y            G++++          + A          K      
Sbjct: 3   ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKGGSTVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++   +    +S  +  ++   G++   K+T   I+  
Sbjct: 63  KAVEIKTYAELVENWLETY-CHTVKKATLTIIKSRLNNYLLPAFGEYKLDKLTPPVIQKQ 121

Query: 123 VESRKHTPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +       L S+ + + K+AV  + +  NP   +  P+RK +  +   
Sbjct: 122 VNQWAKEYNQLGKGYQEYPQLNSLNKRILKYAVSLQVIPFNPARDIIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLQNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINNDKQ 262
            KT      +T       ++++ +                          E  F N+  +
Sbjct: 242 NKTLNCEKEVTTPKTKSSIRVIDLDNKTVLMLRLYKNRQAQVGREIGLTYEKVFSNSFDE 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +A       +     +   + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 YRDARALRSRLEKHLKLSDCPRLTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
            Y+  + D  +           ++ S
Sbjct: 362 IYSHLSKDNKKNATSFYEKAIEKLKS 387


>gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7]
 gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7]
          Length = 319

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 69/297 (23%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  ++  +    I   G      + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTETTYLYWIKAFINFHGKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + +L  E L
Sbjct: 73  ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSEIS--LILNELDGRDKLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMK-------------- 243
             SGLR S+  R  +Q +     S  ++  K        L     +              
Sbjct: 131 YGSGLRVSECLRLRIQDIDIERASLSVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKTQQ 190

Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277
                         L                   + T  + +              +   
Sbjct: 191 NDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A          + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|119384162|ref|YP_915218.1| phage integrase family protein [Paracoccus denitrificans PD1222]
 gi|119373929|gb|ABL69522.1| phage integrase family protein [Paracoccus denitrificans PD1222]
          Length = 351

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 93/363 (25%), Gaps = 40/363 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    +LP          G      R+                   +   + G   + E 
Sbjct: 1   MATISKLP---------SGSWRVQVRRKGH--YISESFLRRGDAELWARTVEGKIDRGEP 49

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHI 119
           I++      T   LI  +R           +   S  +  D +  + G     ++  + +
Sbjct: 50  IHTRVAAAKTFGDLIDLHRADLADVG---RTLGRSKAASLDFLALRLGALKPAELGREKL 106

Query: 120 RSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP---------CLSVERPKRK 167
                 R      P +    L  ++ +   A     +                +    + 
Sbjct: 107 VEFGRQRAKEGAGPVTVGIDLGYIKTILSHAAAVHGIIAPTEGVDLARIALTRLGLVGKG 166

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            E  R  ++E++           +  +       F + + +R  +  RA  +        
Sbjct: 167 NERDRRPSEEEIDAILKALESNPRQFIPVARVVRFAIATAMRQDEISRARWEDYNPRTKM 226

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--------KQKMNATQFSIWFKA 275
           +  +           D  + LL+++                        N       F+ 
Sbjct: 227 LLIRDRKDPRRKTGNDQRIPLLSVSGFDPCALIEEQRALVGSRGRIFPYNGRSIGTAFRR 286

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                G+ +   H +R  + +   +AG T  ++    G K       YT         + 
Sbjct: 287 VCRTLGIEDLHFHDLRHEATSRLFEAGFTIEQVALVTGHKDWKMLRRYTHIRPEGLHALA 346

Query: 335 NSR 337
            SR
Sbjct: 347 ASR 349


>gi|281492428|ref|YP_003354408.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376092|gb|ADA65583.1| Phage integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 399

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 104/383 (27%), Gaps = 63/383 (16%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + + +T+ G++ Y  R          G++I+      +            +  K+    
Sbjct: 5   NIKEYKTKSGEVRYILRGAYIGTDVLTGKQIKTDIRGRTKTGVKNELERLKNEFKKNGNT 64

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRS 121
             ++   T   +   + +        V S     S  D       G+    KITT HI+ 
Sbjct: 65  KGKESLETFGEVAESFFELYKLQQ-KVGSIRQMRSNLDTYAIPAFGNKRISKITTAHIQK 123

Query: 122 GVESRKH---------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            V                    +       L  +  +F+ A+    +  NPC SV  PK 
Sbjct: 124 QVIEWAKNAAEPLGGKQKRDVGSGKDYKLQLNVINRIFQHALSLGIIDRNPCHSVIIPKV 183

Query: 167 KTEGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQ 215
           K +              ++          ++ S         L   SGLR  ++      
Sbjct: 184 KIDKPNKEVKFYTKTELSELFSHIESLDNTKWSTQYFNALIRLLVASGLRIGEAMALEWF 243

Query: 216 HLQNNIFSIKTQKTGTII--------------------------TVELPDGFMKLLAMTP 249
            +  +  ++   KT                                         +++  
Sbjct: 244 DVDLDNQTVSVSKTTVQRTVIQDTPKTNKSNRVISIDSKAVSTLKRWYFFQKKHFMSLGN 303

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
             +   F       M+    +   K     A +   S HG R   A++  +AG T   + 
Sbjct: 304 PHQSLVFPTWQGNVMDYHGLNYRLKKIEDAAKLTSLSFHGFRHSHASLCLNAGMTYKVIQ 363

Query: 309 ATYGWKTVDQAE-TYTKGADRIR 330
              G  T+      Y+      +
Sbjct: 364 ERLGHSTLQMTMDLYSHLEPEKK 386


>gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 298

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 71/251 (28%), Gaps = 13/251 (5%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              A  +  S+     +++R         +    I +   + + +  +    +       
Sbjct: 15  HGYAQKTIRSYTLCMSRLVRYFQKSPL-DLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFL 73

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            +   ++    +    V  PKRK + +  +++ ++  F    +     +  F  L  SG+
Sbjct: 74  FFYSLRDR--KDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCT-SVCEKSIFTLLYSSGI 130

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFI 257
           R  +     +  +     +I  +                 L          P     F  
Sbjct: 131 RIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEIYNPKSYLFFSQ 190

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++       F+     + + K  + H +R   AT   + G +   +    G   
Sbjct: 191 KGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLVYIQKLLGHAD 250

Query: 316 VDQAETYTKGA 326
           +     Y   +
Sbjct: 251 IKSTMIYLHVS 261


>gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200]
          Length = 319

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 68/297 (22%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  ++  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKTYLYWIKAFINFHDKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPLEIS--LILNELDGRDRLIIELL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMK-------------- 243
             SGLR S+  R  +Q +       +++  K        L     +              
Sbjct: 131 YGSGLRVSECLRLRIQDIDIERASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQ 190

Query: 244 -------------LLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKA 277
                         L                   + T  + +              +   
Sbjct: 191 NDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 278 TKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             A          + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 251 GNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 329

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 79/304 (25%), Gaps = 19/304 (6%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRR+R            +   +  +   ++++  P      L  LI  + +     +L
Sbjct: 20  RQGRRVR-KKFKTKVEAQQFERWIIATQNNKDWVEKP-ADQRALTELIELWFQHHG-QNL 76

Query: 88  AV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
                +          +  K G+   R+IT          R        +       +  
Sbjct: 77  KDGLKTVHK----LRVMAAKMGNPKARQITKASFSDYRVLRLAEGKKAKTINLDQEKLGA 132

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           +F   +   +      L   +  +       +   +         EG   + A    L +
Sbjct: 133 VFSVLIELGHYHGEHPLKEMKKIKLPVQEMGFLTREEINTLLARLEGDNLKAAKLC-LAT 191

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G R  +  +   + +  N  +    K      V +       +  +      F       
Sbjct: 192 GARWGEVFKLRREEVIGNKVTYLNTKNNKNRAVFISTELCAQIRDSIQNGRLFANL---- 247

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             N        K  A      ++ H +R   A+     G     L    G  ++ Q   Y
Sbjct: 248 --NYRYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILALQRILGHSSILQTMVY 305

Query: 323 TKGA 326
              A
Sbjct: 306 AHFA 309


>gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
 gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200]
          Length = 389

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 18  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 76

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 77  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 135

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 136 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTDFKF-DLSNNVRSFSKKE 194

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 195 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 254

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 255 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 314

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 315 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 374

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 375 EKETADMMDKLIENL 389


>gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 411

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 101/415 (24%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      T K        +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSSLSVNDTFK------LWTKVKRGLKDNTFKNYIYMYQQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMISTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
              K + +    +   +++ S   E  +    F  +L++G+R  +               
Sbjct: 175 ESPKKKAMTIEEQVLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234

Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                          L N       +      ++ +         M    ++TF I    
Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIECCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSSSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92]
 gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92]
          Length = 323

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 92/317 (29%), Gaps = 58/317 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
              I   R+     + +  +  ++  +    IR       +K+    I   +E     R+
Sbjct: 3   SQFIQSLREHIRARNYSKRTEKTYVHWVLDFIRFHNRIHPQKLGVPEIVRYLEYLAVKRQ 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PS+    L ++  L+K    ++  ++    S +R  +  +     T+ +++    F  
Sbjct: 63  VSPSTQRTALNALVYLYKHYFGRDE-SLLQLGSFKRATKPKKIPTVLTQHEIR--LIFQH 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------------------ 217
                 L  + +  SGLR  ++CR  ++ +                              
Sbjct: 120 LQGDYLLCAKLMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKGKKQRITTLSEFCVSEL 179

Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---------------- 260
                 +    +   +            L+         F                    
Sbjct: 180 KNQIAHARLCWQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQYLLPTKKRLVDERNDNA 239

Query: 261 --KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++       FK    K+G+ K  + H +R   AT   + GA    +    G   V
Sbjct: 240 IRRHHLHERSMQREFKRAVLKSGIAKQATCHSLRHSFATHLLERGADIRTVQEQLGHSDV 299

Query: 317 DQAETYTKGADRIRLGI 333
              E YT   +R    +
Sbjct: 300 RTTEIYTHVLNRGGRAV 316


>gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405]
 gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405]
          Length = 301

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 78/273 (28%), Gaps = 24/273 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT 129
           + E+         + ++  ++  +     +        DFD   IT   IR      + T
Sbjct: 14  LDEFSAYLMSIDKSDSTIKTYIEHIQAFAKWFEETNCIDFDPAVITEIDIRDMRSYLQGT 73

Query: 130 P----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKS 184
                ++    L S++  F +   ++Y+  NP  ++ + K ++  I +   ++  +  + 
Sbjct: 74  RHLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRALRR 133

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDS-----CRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
               G        F +++     +                        K   +  + L  
Sbjct: 134 HVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLNKVRYIPLHK 193

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                +      ++      D             +     FK    + G+ + + H  R 
Sbjct: 194 DVRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRH 253

Query: 292 FSATISADAGATAHELMATYGWKTV-DQAETYT 323
           +        G     +    G  +    A+ YT
Sbjct: 254 YFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286


>gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17]
 gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
 gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17]
 gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574]
          Length = 342

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 89/303 (29%), Gaps = 41/303 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSG 122
           L+   +EY  +     ++ N+  S+ + F   +                  +  K++   
Sbjct: 10  LRGFFTEYLSAE--RGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDY 67

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWT 175
           ++  +     + S+  Q L ++    ++   ++   +        V+  K     +   T
Sbjct: 68  LDWLQTDKSSSVSTRNQRLAAIHAFCRYMQYEDVTRLYQWQEILGVKMKKAIKGTMNYLT 127

Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            + +++  +        G +       L  +G R  +        +  +         K 
Sbjct: 128 MDAVKELLAHIPQTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLFGKG 187

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKA 280
                V + D  + +L           +  +++ +              +   K  AT A
Sbjct: 188 NKKRLVPIQDAQVSILRKYMEENHLLELRMNQRPLFQNGRGGKLTGAGITYILKNYATMA 247

Query: 281 --------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331
                       S H +R   A     AG     +    G  ++   E Y +  + + R 
Sbjct: 248 RTASENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKRE 307

Query: 332 GIK 334
            ++
Sbjct: 308 ALE 310


>gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91]
 gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91]
          Length = 329

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 84/317 (26%), Gaps = 52/317 (16%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             P     T   L+ + R        ++ + + +  +  + I        +++    + +
Sbjct: 3   KMPPSHAPTSPKLLDQLRDKLRLKHYSIRTEVQYVQWVRRFILFHDKRHPQEMGAGEVEA 62

Query: 122 GVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +     +   +A     ++  L         + +    +V R KR        T  ++Q
Sbjct: 63  FLTHLAVSGRVAASTQNQALSALLFLYREVLEIDLPWLDNVVRAKRPARLPVVLTHNEIQ 122

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP 238
                 +      L    L  +G+R  +  R  V+ +      I  +  K        LP
Sbjct: 123 AVLGRMT--GAHGLMARLLYGTGMRLMECVRLRVKDVDFERAEILVRDGKGAKDRVTMLP 180

Query: 239 DGFMKLLAMTPIGKETFFINN--------------------------------------- 259
              + +L      +   + ++                                       
Sbjct: 181 QSLIPVLNEHIRHRRLLYEDDLAKDMAAVYLPDALERKYPKAATDWIWQYIFVAKSYSVD 240

Query: 260 ------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
                  +  M+        K     AGV K  + H +R   AT    AG     +    
Sbjct: 241 PRSGVERRHHMDEKLLQRAMKKAVLAAGVTKPATPHTLRHSFATHLLQAGYDIRTVQELL 300

Query: 312 GWKTVDQAETYTKGADR 328
           G   V     YT   ++
Sbjct: 301 GHSDVATTMIYTHVLNK 317


>gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
 gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B]
          Length = 229

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 15/212 (7%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
             L+S+R  F + + +  ++ NP   V  P++K    +    +++ Q      +     +
Sbjct: 3   TRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVR 62

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPI 250
            R   E +  +GLR ++     V+ +Q     ++          V       + +     
Sbjct: 63  DRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLR 122

Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +           F++    +++             K  V  + S H +R   AT   ++
Sbjct: 123 VRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLES 182

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 +    G + +   + YT   D   L 
Sbjct: 183 SNNLRAVQELLGHENISTTQIYTH-LDFQHLA 213


>gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603]
 gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603]
          Length = 350

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 93/281 (33%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   HI + +E        P++   +L++
Sbjct: 67  SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 126

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                   ++G 
Sbjct: 127 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 186

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     +   +  +       K        +P G  K L    
Sbjct: 187 RDAAILGVLLGCGLRRSEIVALDMGSMIHKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 246

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                        +   F +   ++M+        + +  +AG+ K + H +R+  A+  
Sbjct: 247 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEKFAPHDLRRTFASSM 306

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R++   +   
Sbjct: 307 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 347


>gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212]
 gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212]
          Length = 361

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 101/356 (28%), Gaps = 43/356 (12%)

Query: 15  RTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGST-----------------P 56
             R       F     R R  +P P   T        L                      
Sbjct: 9   TIRGNSAQISFTYQGVRCRESIPIPPTKTAQKELALKLQSIKYEIKTGTFDYNRHFPYSK 68

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115
           K +     R    T+K  +  + +      L +++   + S     +I   G+    ++T
Sbjct: 69  KAKEFRKNRPDLYTIKEALISWLQRNQAK-LQLSTLQDYNSAIYHHLIPTFGNLTISELT 127

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              ++  +     +       LT +R +F+     E +  NP   V+    KT    P+T
Sbjct: 128 ASKVKEWLSELPCSNKRKSNILTPLRQMFEELYLDEIIDKNPLSRVKNLPNKTREPEPFT 187

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
           +E++ +  +      Q +   +F  YSGLR S+      ++++     I  ++       
Sbjct: 188 QEEIIKILN--ELTGQAKNLIQFAFYSGLRTSELIALCWKNVEFEQNRIFIKQAHVRGQL 245

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKAK 276
                      V L     + L                       +          +   
Sbjct: 246 KDTKTKSGKREVTLQPQAKEALLNQQAFTGKQNQIVFHNPKTKQPWKNDQPIRKNVWIPA 305

Query: 277 ATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIR 330
             KAG+     +  R   A++    G     +    G K      + Y +   + +
Sbjct: 306 LKKAGIKYRNPYQTRHTFASMLLSRGEKLLWVAQQMGHKDWGMIIKVYGRWIPQSK 361


>gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13]
 gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 27/301 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           L   +  Y           +S  S++   +  +R  G     Y +I  + +    +    
Sbjct: 6   LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ + ++   ++  +R ++  A+       +  L            +     +  +    
Sbjct: 65  RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPMESLRLLMT 124

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                       R      L+ G+   D        ++N +     QKTGT + VE+   
Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284
             +LLA                                    F+   K  A   GV    
Sbjct: 185 AKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +++ +R   AT   + G     +    G +++   + Y K     ++   N     S+ +
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304

Query: 345 S 345
           +
Sbjct: 305 N 305


>gi|56698711|ref|YP_166466.1| phage integrase family site specific recombinase [Ruegeria pomeroyi
           DSS-3]
 gi|56680448|gb|AAV97114.1| site-specific recombinase, phage integrase family [Ruegeria
           pomeroyi DSS-3]
          Length = 375

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 95/321 (29%), Gaps = 17/321 (5%)

Query: 29  HGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
             RR  L    + +   A   A  L  +    E   +P       +   + + K     +
Sbjct: 49  KRRRKTLGRYPDLSLADARKQAKQLLSANAMGEGQVTPHAPVVAFEEAKARFLKDCEGRN 108

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
               +   +    ++     GD   R++  + +   V     TPS       ++R +  W
Sbjct: 109 -KPRTVADYRRLLNRHFNFKGD--VREVYRQQVMRVVSGLSATPSEQSHAYVAIRTMMNW 165

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLR 205
            VR   V  +    +++   + +  R  +++++++      E          LL  +G R
Sbjct: 166 CVRHGLVDHSVVPPMKQKTSERD--RVLSEDELRKVYLRAQETPFAFGPIVQLLILTGQR 223

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
            ++  +     + +   +              P   +    +  +      +        
Sbjct: 224 RTEIGQMRRSWISHGEVAFPKGFAKNKREHRFPLSPLSQQVVADLPNTGDLLFPAATDFE 283

Query: 266 ATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---Q 318
               +  +  K    G+      + H +R+  ATI A  G   H         +      
Sbjct: 284 KAFTTWAWHKKRFDEGLEAVEPYTLHDLRRTFATIHAKIGTPIHVTEKLLNHVSGTISGV 343

Query: 319 AETYTKG--ADRIRLGIKNSR 337
           A  Y +   AD +R       
Sbjct: 344 AAVYNRHSYADEMRHAASQFD 364


>gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 313

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 20/275 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144
              +      +        R          + + +R+ +   +  P     FL ++R  +
Sbjct: 42  RGYSPRGVRRYLQDLAFWFRFLEAEGLPP-SPEAVRALLLRERWAPRRVQGFLAALRSYY 100

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLL 200
           ++    +   A +P   + RPK           E++++F   + E  +  L      FL 
Sbjct: 101 RYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLEAFREEKEAALLEALARFLY 160

Query: 201 YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI 250
            +GLR S++     +++     + +      K      V L     ++L           
Sbjct: 161 GTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNKERLVPLSKTAREVLEALGRLQGNVN 220

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                         +A      F+  A +AG++    + H +R   AT+  + G     +
Sbjct: 221 IFTFSQGRRKGHVPSARWVEAKFREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAV 280

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G +++   + Y   A R RL  + + R+  +
Sbjct: 281 KDLLGHESIATTQIYLH-ASRERL-REAASRLPEL 313


>gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206]
 gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206]
          Length = 350

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 86/325 (26%), Gaps = 30/325 (9%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK I   Y    +GRR+R           A+       T  + ++        TLK ++ 
Sbjct: 9   GKWICECYPAGRNGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTLKDVVE 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------- 126
            + K  H  SL    +  ++     ++   G+     +T+K      + R          
Sbjct: 67  LWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPIATDLTSKMFAHYRDKRLTGEIYFSEK 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +P +     + +  +F    R    +    L   R     E    W   +     
Sbjct: 124 WKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVEL 183

Query: 184 SFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
               +   P LA      L +G R  ++       +     +    K     ++ +    
Sbjct: 184 LADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIPISKEL 243

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            + +                       F    +  +      +  H +R   A     +G
Sbjct: 244 YEEIMALDGFNFFKDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSG 295

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                L    G   +     Y   A
Sbjct: 296 GNILALQKILGHHDIKMTMRYAHLA 320


>gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319]
 gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319]
          Length = 438

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 92/294 (31%), Gaps = 23/294 (7%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL  L  ++          S++V +   +                  D    ++T   I 
Sbjct: 139 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLNEKYKRCDIRLSELTFTVIH 198

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 + T    P++  + + + + +     +   +  +P ++      +       T 
Sbjct: 199 DFDIYLRTTAGQNPNTVTKTMKTFKTITILGRKMGALNHDPFINH-HFHLEPVNRGFLTD 257

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++ +  +     ++    R  F F  ++GL   D       ++                
Sbjct: 258 EEIMKIANKDFGINRLELVRDIFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 317

Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           +VE     + +    +T  G +T+        +   + + + K  A   G+ K  + H  
Sbjct: 318 SVETNVLLLDIPKRIITKYGHKTYRDGKLLPVLTNQKINAYLKEIADLCGIKKRLTFHLA 377

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
           R   AT+S   G     +    G   +   + Y +  ++       + + ++S 
Sbjct: 378 RHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEELAGKLSK 431


>gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 382

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 119/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +  N                K
Sbjct: 188 LQRFIAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLNEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|326778043|ref|ZP_08237308.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658376|gb|EGE43222.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 377

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 101/367 (27%), Gaps = 35/367 (9%)

Query: 1   MTPSLR-LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M    +    F    +   G+    +    G          +T       A      +  
Sbjct: 1   MAAKRKSRRAFGRIRKLPSGRFQARYPGPDGVLRAADQTFPTTTDADRWLARKRIEMEEG 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
               P +  TT++   + +  +     L   ++ S+ S  +  I+   GD +   +    
Sbjct: 61  RWVDPAEGKTTVRDWSARWLTAVSPQ-LKHKTQASYRSLINSLIVPALGDRELSSLRPIT 119

Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           I   V + K    SA +       +  + + AV  E +   PC  V+ P+         T
Sbjct: 120 IVEWVGAMKTRGLSASRIRQAYRVLSQIMRAAVDNEMIGQTPCRGVKLPRMPQTEPHILT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
              ++  +   S      L    L Y+GLR  ++       +  +   +   +       
Sbjct: 180 --PLEASRIVGSATKPHDLLISLLAYAGLRVGEAFALRRADIDVSGGLVLVDENLAEANG 237

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275
             +         ++L + P        + +                       ++     
Sbjct: 238 TLVFDTPKSHQKRVLRIGPSLAARIGRHLETLPGGEDALLFVTPGGKPLRYNQWRKAYFD 297

Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330
                AG+ + + H +R    T  AD  G          G          Y +  A R  
Sbjct: 298 PAVVAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355

Query: 331 LGIKNSR 337
              + + 
Sbjct: 356 QVAEAAD 362


>gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
 gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM
           16608]
          Length = 387

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 101/326 (30%), Gaps = 36/326 (11%)

Query: 57  KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            +E      +   TL  L     EY++     +L+  +  +F+  +   +      D   
Sbjct: 55  LKERYMQQSRPMPTLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 114

Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
                +            +    +  SS    L  +  + + A+++ YV  +P     +E
Sbjct: 115 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 174

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +     + +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 175 TPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 234

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +           +   +   + + F+   +    
Sbjct: 235 GRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREFP-SNSNFNRTIQEICI 293

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y +   + ++  
Sbjct: 294 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 352

Query: 334 K-----------NSRRISSVVDSDDP 348
           +             R+   +  S  P
Sbjct: 353 EMQPLMGSEHTRVLRKALRLCPSRTP 378


>gi|227431814|ref|ZP_03913841.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352497|gb|EEJ42696.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 355

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 25/338 (7%)

Query: 16  TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R             G   +       T   A   A+     K     S R        +
Sbjct: 6   KRGTNWTASVSIKVDGSFKKKTKSGFKTKREATNWAIEMENKKINDTLSKRDGII--AEM 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
             E+        L   ++  +      + ++  D    +I +   +  V      H  SS
Sbjct: 64  FDEWYAIFKEPLLETQTKGWYRLVSKILRKEWPDRKLSEINSSDFQKMVNEYGKNHVRSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +    K+AV ++++  +   +++    K+   +     +  + +    E    
Sbjct: 124 VAHVKNILSSFIKYAVDEDFINKDFSRNIKVFSSKSSKDKDLKFLENDELEMLIKEIENS 183

Query: 193 RLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------IT 234
                 ++    YSG R S+              +I   K+                   
Sbjct: 184 AAVTSHMILLAIYSGARYSEVAALTRNDFNFTNNTININKSWQANDQSFKATKTKTSNRI 243

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           ++LP  FMKL+     GK+  F +           +   +    K      + HG+R   
Sbjct: 244 IDLPPVFMKLVRQWTFGKKYAFESITGLPPTNAAVNKQLRRYLKKNDSKLITFHGLRHTH 303

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           A+           +    G   V+    TY    D+ R
Sbjct: 304 ASFLLSQDIAIQYVSERLGHADVNITLSTYAHLLDKKR 341


>gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
 gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99]
          Length = 342

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 87/317 (27%), Gaps = 40/317 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +        +      R+   TLK L+  +  SAH  +L 
Sbjct: 22  KGKRIR------KKFATKGEALAFEQFTVQNPWQEEREDRRTLKELVDAWY-SAHGITLK 74

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQF 136
              R   +          G+   R    +      E R            + +P +    
Sbjct: 75  DGIRR--QQAMHHAFGCMGEPLARDFDAQMFSRYRERRLKGEYARSNRVKEVSPRTLNLE 132

Query: 137 LTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           L   R +F    R  E+   NP  ++   +     +   T + +            P L 
Sbjct: 133 LAYFRAVFNELNRLGEWKGENPLKNMRPFRTAEMEMAWLTHDQIALLLDECKRHDHPDLE 192

Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 L +G R S++      HL     +    K     TV +     + L     G+ 
Sbjct: 193 TVVRICLATGARWSEAESLKKSHLAKYKITYTNTKGRKNRTVPISKELYESLPDDKKGRL 252

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMA 309
                              F++   + G+   A    H +R   A+     G     L  
Sbjct: 253 FSDCYG------------AFRSALERTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQR 300

Query: 310 TYGWKTVDQAETYTKGA 326
             G   +     Y   A
Sbjct: 301 VLGHTDIKMTMRYAHFA 317


>gi|322410893|gb|EFY01801.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/382 (12%), Positives = 108/382 (28%), Gaps = 51/382 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63
           +T+ + ++G I+Y            G+R++       T       A           ++ 
Sbjct: 3   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITG-RTQTEVKQKAKHTQFDFLSNGSTI 61

Query: 64  -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
               +    + L   + KS     +   +  S +      I+   G+    KIT   ++ 
Sbjct: 62  HKEAQIRNYQELAELWLKSYQLT-VKPQTYESTKLLLKNHILPVFGNMKLEKITPSFVQQ 120

Query: 122 GVESRKHT------PSSAIQFL---TSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI 171
                 HT        S  + +     +  L  +   R+  +      S +R K      
Sbjct: 121 FANKLAHTLVNFKVACSINRRILQYAVLLQLIPYNPAREIIIPKKQKKSADRVKFINPQN 180

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                + M+       +     + + FLL +G R  ++       +     ++   KT  
Sbjct: 181 LKALLDYMETLAPTKYQYYYDNVLYRFLLATGCRFGEAVALEWSDIDLEAGTVSISKTYN 240

Query: 232 I--------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +        +  L +     +  F +      +
Sbjct: 241 RQINQISTPKTKSGKRIISIDNKLVLLLKQYRNRQRLIFLEIGARAPKVIFASPTLTYAS 300

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           +   S     +  +  + + + H  R   A++  +AG +  EL    G   +    +TY 
Sbjct: 301 SDVRSKALAHRCKEVDIPRFTFHAFRHTHASLLLNAGISYKELQHRLGHSNIKMTLDTYG 360

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
             +       +        +++
Sbjct: 361 HISKEKE--KEAVSYFEKAINN 380


>gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 83/307 (27%), Gaps = 41/307 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           L    ++Y    +    +  S  S+   F   +                   T + +   
Sbjct: 10  LNKYFTQYM--PNERGNSPQSIDSYRYAFILYLEYMESVKKISAERIVLSDFTRETVTGY 67

Query: 123 VESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +        ++PS+  Q L +++    +   +    ++    +     K    +  +   
Sbjct: 68  LNWLGASRENSPSTRNQRLAALKGFVHYLKYEFPDYLDEYQRILGIPLKKTQRKEISYMK 127

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--- 228
                    Q     + G    +    L  +G+R ++     V+ +              
Sbjct: 128 TDGVNLLVEQIDVTRTNGLWDYVILLILYTTGIRVTELINVRVKDISLTEPYTIRIHGKG 187

Query: 229 ---TGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280
                  +         + L           +ET F N+ K        +   K    KA
Sbjct: 188 NKGRYVPLMRTAVPHIKRYLETMGYANEARYEETLFKNHMKTPFTRQGINYVLKKYGIKA 247

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331
                     + SAH +R   A     +G     +    G  +V   E Y +  A   R 
Sbjct: 248 KRINSELIPNDLSAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAKLKRK 307

Query: 332 GIKNSRR 338
            I+ + +
Sbjct: 308 AIEAASK 314


>gi|227522679|ref|ZP_03952728.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC
           8290]
 gi|227090127|gb|EEI25439.1| possible bacteriophage integrase [Lactobacillus hilgardii ATCC
           8290]
          Length = 374

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 106/373 (28%), Gaps = 47/373 (12%)

Query: 14  ERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            +  +G  I        G  RRI             + + +     K   +       T 
Sbjct: 5   YKRANGNWIARVSYKENGEYRRINQGGFRTRKLAQTWATEVENRRNKGNVLAYSE---TF 61

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           L    +++ ++      LA N+   +      +   S +   ++IT    +        +
Sbjct: 62  LPDFFNKWYQTFKSPKGLADNTVQIYAFTKHVLANSSLNMPLKEITFTDYQQFFNQLGKR 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIRPWTKEDMQ 180
           ++ SS  Q  T +R   + A++   +  N    VE           K   +    K    
Sbjct: 122 YSVSSLRQVNTIIRACVRKALQMRQIPYNFTDDVEISGKASAPLSSKYLEVDDIKKLTDY 181

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVEL- 237
              +        ++A  F L +G R ++        +     +I   KT      T E  
Sbjct: 182 CVANIQELTDVSKMAILFSLLTGARFAEVAGMTWDCVNFREKTITINKTIGMQSRTFEKT 241

Query: 238 -----------------PDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWF 273
                                 KL++   +            F     + +  +  +   
Sbjct: 242 KNSSSIRTLSIDLTLLTMLQKWKLISDHHMLKVGFKNPMNLVFYTPFHRPLYNSMVNNDL 301

Query: 274 KAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--GADRI 329
           K    K      S HG+R   A+     G +   +    G K++   +  Y     A   
Sbjct: 302 KKICRKNLSREISFHGLRHSHASYLIAKGISVQYVSKRLGHKSIGTTQNVYIHFLKAAET 361

Query: 330 RLGIKNSRRISSV 342
           +   +  + ++ +
Sbjct: 362 KENEQAQKMLNEL 374


>gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae pv. syringae FF5]
          Length = 312

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 112/315 (35%), Gaps = 30/315 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG    Y+    G+  RL        + AY   + G +     +            LI 
Sbjct: 4   KHG---AYYLVRKGKWERLGSDF-QEALLAYAKIVGGKSNGGMSL------------LID 47

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E   +     L+ N+   +E+   ++     +F+ R++  +H+ +       TP+ A + 
Sbjct: 48  EALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRV 106

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           ++ +R++F +A+ ++ V  NPC  + R   K         E      +     S   + +
Sbjct: 107 ISFLRMVFAYALERQIVDSNPCTGIRRHAEKKRDRYISDAEFAAICAASSEYMS---VIW 163

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254
           E    +G R SD     +  + +   + + QKTG  + V +      LL           
Sbjct: 164 EMCFLTGQRISDVLSIKLSDISDVGIAFEQQKTGAKLIVGMSPDLKALLDRVNALPRKVR 223

Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
               F   +  + ++     + F+A    AGV   + H +R  S T +   G        
Sbjct: 224 GATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDRQGNN---AQM 280

Query: 310 TYGWKTVDQAETYTK 324
             G       + Y +
Sbjct: 281 LGGHTDAKMTKRYLR 295


>gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 327

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 71/300 (23%), Gaps = 37/300 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           ++    +Y +       + ++  ++      +     D             +    I + 
Sbjct: 13  VESFFRDYLQ--RLKGASTHTVRAYRDTLRLLFIYLADTKGCAVADLQISDLRVDAIAAF 70

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
           +      R +   +      ++R   K  +R +         +     K       T   
Sbjct: 71  LTQLESVRANAVVTRNYRRAAIRSFCKHLIRVDLPHAEQYQRILALPAKKSRQPLATYLE 130

Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
                  + Q     + G +      FL  +G R S++       L            K 
Sbjct: 131 AEEVHAIIDQPDRHTALGQRDHGLLLFLYNTGARISEALAVRCADLHLTPPRQVRLHGKG 190

Query: 230 GTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                  L     + L               F+N   + +     +   +     A    
Sbjct: 191 RKDRLCPLWRETTQALQCLPAVRNDTPGSFVFVNRQGEPLTRDGVAYLLRKYVADAIPTT 250

Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKN 335
                   + H +R   A     +G     +    G  +V     Y T      R  ++ 
Sbjct: 251 PTLKRRKITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKRAALEA 310


>gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
 gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1]
          Length = 320

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRAL 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  ++    V  +Q+           K G +  + +       +       
Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPMHPVAAGRIHQYLESS 218

Query: 253 ETFFINNDKQ------------KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
                +                 + A        A A KAG+       HG+R  +AT +
Sbjct: 219 GHHLADRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
 gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC
           25986]
          Length = 399

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 90/376 (23%), Gaps = 57/376 (15%)

Query: 15  RTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R   G+          +  GRRIR     ++        A           +S R     
Sbjct: 13  RGADGRWFARPYMGTDRVTGRRIRPYRSWDAELTREQAQAECDRWAATFDPSSARDSSKR 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR--- 126
           L  ++  Y        L+ NS  ++ S    ++    G   Y ++    + +        
Sbjct: 73  LSSMLETYISDP-VNGLSDNSVATYRSVVRTMVEPTIGRLPYDQLEPWDVSAAYRMLLAP 131

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
                 +P + ++    ++  ++    +  +  +  L V  P          +       
Sbjct: 132 RSGKGLSPKTLLKMHALLKGAYRSW--RPALGRDIMLDVPAPSPDPVEPFALSELDTDEL 189

Query: 176 ------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                     +             LA    L +GLRC + C    +  +  +  +     
Sbjct: 190 SRALASAMSSRSASGANISRRTEALAVYLALNTGLRCGEICGLQRRDWRRALHDLHVVGQ 249

Query: 230 GTIITVELPDGFMK--------------------------LLAMTPIGKETFFINNDKQK 263
                      + K                           LA                 
Sbjct: 250 AVEHPELHRQAYTKGRRVRNVALAPAVEAQLQRHLDWQDTWLARKGPTALVVTFGPAGAI 309

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
              +  +  FK+     G+ +    H +R   A+     G     +    G  +V    +
Sbjct: 310 ARPSTVTSRFKSLVRDLGLPEETVFHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLD 369

Query: 321 TYTKGADRIRLGIKNS 336
            Y             +
Sbjct: 370 IYGSVMPGRDQAAAAA 385


>gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18]
 gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735]
 gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18]
 gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735]
          Length = 403

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 20/258 (7%)

Query: 91  SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQFL 137
           ++ ++  +        +         D +  ++T   I       K        +AI+ L
Sbjct: 104 TKANYRKFDICKRHFAKFLEEKYARTDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIKTL 163

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194
            + + +  +  +      +P L++   K K       T E++           +    R 
Sbjct: 164 KTFKTVIIFGRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEVDTIMHKEFATQRLVNVRD 222

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL   D       ++                        + +  +     E 
Sbjct: 223 IFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPKIIIKKYEG 282

Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
              N     + +  + + + K  A   G+NK  + H  R   AT+    G     +    
Sbjct: 283 KAKNGRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKML 342

Query: 312 GWKTVDQAETYTKGADRI 329
           G  ++   + Y +  ++ 
Sbjct: 343 GHTSITTTQLYARITNKK 360


>gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 485

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 82/332 (24%), Gaps = 52/332 (15%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F  A + A   +        S        +  + E+         + ++ +S+  +    
Sbjct: 133 FREAVLHAEVVAKEIPSESVSAEHVSGEGEVWLEEFLCELRRRKYSYSTEVSYLQWIRAF 192

Query: 103 IRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
               G    R+     +R  ++        SA     ++  +     +   V +      
Sbjct: 193 AVFLGSNALREFGRLDVRRFLDYLALERRVSASSQRQALNAVVFLYKQVFRVELGDFSDY 252

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-- 219
            R K KT       K +M++            L  +    +GLR S+ CR  V+ L    
Sbjct: 253 LRAKSKTNLPTVLGKGEMRRLLGEMKGN--RLLMAKLQYGTGLRVSELCRLRVKDLDFEL 310

Query: 220 ----------------------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                                        + S +                 + L      
Sbjct: 311 GKVLVVGGKGNKDRALPLPKKLAKELEQQLASAREVFEKDRSDEVAGVYLPEALERKFSK 370

Query: 252 KETFFINNDKQKMN-----------------ATQFSIWFKAKATKAGVNKSA--HGVRKF 292
             T +                             +       A+KA + K    H +R  
Sbjct: 371 AGTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRSYQAAISRAASKAEIQKRVSSHALRHS 430

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT   D+G     L    G K +   + Y  
Sbjct: 431 FATHLLDSGINLRTLQELMGHKDIKTTQVYLH 462


>gi|320196994|gb|EFW71613.1| Phage integrase [Escherichia coli WV_060327]
          Length = 387

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +    G+RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGGKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFRLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFS 223
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +         +
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVN 237

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
            +  K+   I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 312

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
            + L+ EY      G+ +  +   +E + D+ I        +++    I         + 
Sbjct: 4   FEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQ 63

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 64  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 123

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +        K      V + 
Sbjct: 124 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIR-VLGKGDKWRVVPIS 182

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFK----------A 275
           +    LL      ++  F     +                                    
Sbjct: 183 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTGLQ 242

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 243 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 302

Query: 336 SR 337
            +
Sbjct: 303 VK 304


>gi|325662731|ref|ZP_08151325.1| hypothetical protein HMPREF0490_02065 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470968|gb|EGC74196.1| hypothetical protein HMPREF0490_02065 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 361

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y    G  ++              +  A          +          +  +  Y 
Sbjct: 15  RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129
                  +  N+ ++ +     +I+        ++I    IR    +           ++
Sbjct: 67  NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNTMMNYRNKQGEGYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
                     +  +   AV    +  N         ++       WTKE+  +F    ++
Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
                 AFE L + G+R  +              +I+  K+                   
Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + +P+   + L            N+   +++ +            +GV +   H +R 
Sbjct: 246 RMITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  + G +A  +    G ++V+    Y  
Sbjct: 306 SHVSLLINMGYSAVAIGERVGHESVEITYRYAH 338


>gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
 gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413]
          Length = 311

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 26/278 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TT + +I  +        L+  +R  +     Q        D R I+     +  + 
Sbjct: 24  EDTTTTERVIELWLV-----GLSRTTREQYSRDMRQFRAFVKLDDIRIISPMTFIAYAQH 78

Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            + T +  +  + L S+     +AVR  ++A NP  +V +PK  T        +      
Sbjct: 79  LEQTYAVATTRRKLASLSSFCSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRM 138

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPD 239
              ++  + R   + L   GLR S++             +  T       G   T+ +P 
Sbjct: 139 LDRTDDHRNRCLLKVLYSLGLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQ 198

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------------WFKAKATKAGVN--K 284
                L      ++    N+   +  + +                  KA A   G+    
Sbjct: 199 SVWLELTELRTNQQHNGQNDYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPESV 258

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           SAH +R   A+ S   GA+   +  T G   +     Y
Sbjct: 259 SAHFLRHACASHSLANGASIQLVKETLGHANISTTNWY 296


>gi|322411263|gb|EFY02171.1| Integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 381

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 112/380 (29%), Gaps = 52/380 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++      +       +               
Sbjct: 3   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITGRTQTEVKQKAKHAQLDFLSNGSTIH 62

Query: 65  RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           ++   +  + L   + KS     +   + ++ +    + +I   G     K+T  +I+  
Sbjct: 63  KEAQISNYQELAELWLKSYQLT-VKPQTFVATKRMLHNHLIPIFGSLKVEKLTVSYIQRF 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----- 177
           +    +         +  R + ++ V  + +  NP   V  PK      +          
Sbjct: 122 INDLSNQLMHYGVVHSINRRVLQYGVSLQLIPFNPARDVILPKVPKRENKVIKFIASEDL 181

Query: 178 -----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 M++  +         + +  LL +G R  ++       +   + +I   K  + 
Sbjct: 182 KELLSYMERLANKKYIYYFDYVLYNVLLATGCRFGEAVALEWSDIDLEVGTIDINKNYSR 241

Query: 233 ITV--------------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +                                     L ++    +  F   +K+  N 
Sbjct: 242 LLKLLGTPKSKAGFRVISIDKKTVNMLKLYKNRQRQLFLEVSDCAPKVVFATPNKEYQNM 301

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                    +  +  + + + H  R   A++  +AG +  EL    G  T+      Y+ 
Sbjct: 302 GTRQDSLDRRCAEIAIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSH 361

Query: 325 GA-DRIRLGIK----NSRRI 339
            + D+ +  +         +
Sbjct: 362 LSKDKEKEAVSFYEKAMNNL 381


>gi|312872206|ref|ZP_07732279.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092290|gb|EFQ50661.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 329

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  K    + R++ T  +
Sbjct: 40  ETEEEVNAELTNEQFLNNFLAAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R         +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQHEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMRDSC-EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L     G+               +++         +    K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 86/285 (30%), Gaps = 27/285 (9%)

Query: 75  ISEYRKSAHWGS----LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +++Y +S         +      +   +  +      D    +I   +I   ++  K   
Sbjct: 105 LTDYIQSVAEKKSENEVRKTVLHAVVYHLRRYNPN--DIQLSRIDKDYILGFLDYLKTAK 162

Query: 131 SS---------AI---QFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWT 175
            +               +   +R    +AV +E ++ NP   ++    P +        T
Sbjct: 163 QTHTKKEKLLHVNTQVYYYKMLRYCLNYAVSEELISANPMNKIKNEEKPHKHRTEREYLT 222

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            +++++           + AF F  + GLR SD        ++ +             T 
Sbjct: 223 IDELRKLAQTPFYNGLLKKAFLFSCFCGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTK 282

Query: 236 ELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           E          +  +             K+ +   + +      A +AG+ K  + H  R
Sbjct: 283 EAISLPLSQEAIKQLPKREDAKEDDIIFKKLITLGRTNEILPKWAEQAGIKKHITFHTAR 342

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
              AT+    G   + +    G   +   + Y K  D   +  I 
Sbjct: 343 HTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 387


>gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666]
 gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666]
          Length = 291

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 23/269 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L      +     LA  ++  +     ++ R         ++ + + +     V+ RK +
Sbjct: 4   LRQRMLDAMTVRGLAERTQECYAEAVSRMARHY-HRSPDLLSPQEVEAYLLHLVKDRKLS 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS     ++ R LF+  + ++          + P+++          +           
Sbjct: 63  YSSVNHAASASRFLFETVLGRKSDEHLRPPMAKVPQKQPH----LLAREEIARLFACCAH 118

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245
              R+A + L  +GLR S+  R  V  +          +   K G      L    + LL
Sbjct: 119 PAYRMALQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGKGGADRYSILSPSLLALL 178

Query: 246 AMTPIGKETFFINNDKQKMNAT--------QFSIWFKAKATKAGVNKS--AHGVRKFSAT 295
            +                 N T             ++A    AG+ KS   H +R   AT
Sbjct: 179 RLYCQTYAPQRNPGKWLFANGTGERGVGIESLQRAYQAARHCAGITKSGGTHTLRHCFAT 238

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
              ++G   + +    G + +     Y  
Sbjct: 239 HLLESGVDLYTISRLLGHRHISTTSRYLH 267


>gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 300

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 83/272 (30%), Gaps = 25/272 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            T   L  ++  SA++  L+  ++  +  +  +++   G      I   HIR  ++ R  
Sbjct: 1   MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGE 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + + A    +SM  ++ W   + YV  NPC  V + K K        KE          
Sbjct: 61  QSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSVAP- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                 +A E       R SD      + + N+   I+  KTG              +  
Sbjct: 120 --LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEK 177

Query: 248 TPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISAD 299
                       N    +     F+  +     +AG       + + H +          
Sbjct: 178 AKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL--------KA 229

Query: 300 AGATA-----HELMATYGWKTVDQAETYTKGA 326
            G +       +     G KT  Q   Y +  
Sbjct: 230 KGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            ++   +  +  +     Q + +++    +   +       C  V R KR+       +K
Sbjct: 6   DYLLYLIHEKNISSCQQNQRINAIK----FYYEKVLGQERRCYKVNRAKREKTLPDVLSK 61

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT 234
           E++++         +    F  L  +GLR S+        +  +     ++  K      
Sbjct: 62  EEIKKILDATVTDLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRY 121

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGV 289
             L    MK L       +      + +       +  S   KA A +AG+ K    H +
Sbjct: 122 TLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLL 181

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   AT   + G     +    G   +   E Y   AD
Sbjct: 182 RHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIAD 219


>gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 324

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 94/321 (29%), Gaps = 45/321 (14%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
           ++   T++  ++++  +    +L   S    E      I  + G    +K+++  I+  +
Sbjct: 5   KQTNETVEEYMTKWLITVKKPTLKPTSFDRVELSLKYQIFPRIGTIKMKKLSSDDIQIML 64

Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            S    ++ S+  +   +++   K A  +E +  NP  +V  P+  +     +   +  Q
Sbjct: 65  NSLSEVYSHSTVKKAYVNLKSCLKMAEIREDIKKNPIHAVVLPRNTSPNEVSFYSAEQVQ 124

Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
                +  +        +       LL +G+R  ++     + +     SI   K     
Sbjct: 125 MIVSEAVSTYKNGTFKYRYGYLIVLLLNTGMRLGEALALQWEDVDWPKRSIHICKNVENV 184

Query: 233 ----------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--- 267
                                   + L D  M  L      +            N     
Sbjct: 185 KSRNGDKSYTKIIQMPKSDKSVRRIPLNDNAMDALVKLNSMQAEMNCKLVVATENGNYVD 244

Query: 268 --QFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
                   ++     G++      H +R   AT+    G     +    G   V      
Sbjct: 245 GGNVRRTMQSILNNCGIHGKTDIVHALRHTFATLLIRRGVDIKMVSELLGHSDVTITMKF 304

Query: 322 YTKGADRIRLGIKNSRRISSV 342
           Y    +  +      R++  +
Sbjct: 305 YYHVVEEQK--NTAIRKLDDL 323


>gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
            + L+ EY      G+ +  +  ++E + D+ I        +++    I         + 
Sbjct: 3   FEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQ 62

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 63  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +        K      V + 
Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIR-VLGKGDKWRVVPIS 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFK----------A 275
           +    LL      ++  F     +                                    
Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGLQ 241

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301

Query: 336 SR 337
            +
Sbjct: 302 VK 303


>gi|330997617|ref|ZP_08321462.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570145|gb|EGG51885.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 410

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 97/319 (30%), Gaps = 28/319 (8%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107
            +   +E +    K  TTL   + E+     +     ++ +S  ++      +    G  
Sbjct: 92  EAKDVKEALQGSVKTQTTLLSFVDEHISELSTHEGIDMSKSSVWTYRKIHKNLAEFIGEK 151

Query: 108 ----DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D  + ++T   I        + +  +  +   +++  + + + A  +         
Sbjct: 152 YRLTDLAFGQLTEPFISDFHHYLLDEKGFSSGTITIYVSLFKKMCRIAFERGLCKNLLFA 211

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGV 214
                  +    +  +  D  + +       +PRL      F F  Y+G    D+     
Sbjct: 212 HYRVGTPRVTTPKSLSMSDFIKIRDVELPEDKPRLSVSRDMFLFACYAGTAFIDTVSITK 271

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSI 271
            +++      K                +KLL          E    +     ++  +  I
Sbjct: 272 ANVKVLEDGDKWLIYN--RKKTGTLARVKLLPEALELMAKYEDEARDTLFPLLSTNRVRI 329

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   A  +K+   H  R   A++   +AG     +    G K V   + Y +   +
Sbjct: 330 DLITICKLAETSKTYSYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVT-Q 388

Query: 329 IRLGIKNSRRISSVVDSDD 347
            +L  ++  +  +  + D 
Sbjct: 389 KKL-FEDMDKFIAATEKDF 406


>gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925]
          Length = 272

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 81/267 (30%), Gaps = 15/267 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TP 130
           + ++ +  +    +  +  ++++   + ++        +ITT ++R   +        +P
Sbjct: 5   LEKFIEYLYQEDKSEKTIYTYKNDIKRFVKYFEKNKL-EITTINMRKFKDYLLEVLLLSP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + + ++R   ++            +  +        I    +      ++  +   
Sbjct: 64  KTVNRNIIAIRQFLEYLHINNIDIKMIKIQDQGFLDD---ILTNDEAIRMIKETEKARDL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +     L Y+G+R S++     + +  +       K      V +P    K+      
Sbjct: 121 RAKAFICTLYYTGMRVSEAISVLSKDINEDSIR-ILGKGRKYRDVLIPKKLKKIWKDYMT 179

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
            +          +   ++        K     A + K     H  R        D G   
Sbjct: 180 VRINNSDKLFTGREGGISRFTALNIVKKYGGMAKIKKDKVYNHAFRHLYCINLVDRGIPI 239

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G + +     YT+ + +  L
Sbjct: 240 DAVKDLAGHENISTTTIYTRKSKKQLL 266


>gi|313635335|gb|EFS01619.1| phage integrase family site specific recombinase [Listeria
           seeligeri FSL N1-067]
          Length = 366

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 110/365 (30%), Gaps = 43/365 (11%)

Query: 16  TRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           T+  +  Y            G++ R+ + + ST   A                 P  K  
Sbjct: 4   TKTARKSYRVDISLGVDPLTGKQRRVRHNNISTKRSAQQLENNLKQHYYNGTLLP-DKSL 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T K L + Y +S    +       +   Y+ + +     D   +KIT  HIR   E    
Sbjct: 63  TFKQLGNLYFQSYTI-NHKPTYIRTQRGYYSNHLFPYFKDCLIKKITQTHIREFREHLLT 121

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + +S  + +  ++ +F  AV +  +  NPCL +++ K   + ++ WT  +   F S 
Sbjct: 122 LNLSFNSINKHMILLKKIFDVAVDESLIYTNPCLRIKKLKIIKQKMQFWTTTEYLHFISC 181

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------- 235
             E  +   + ++    +G+R  +        +      I   KT + I           
Sbjct: 182 IREDEEVHKIFYQTAYLTGMRAGELLALKWSDINLVKQEIHVCKTVSRIDGKMIVTPPKS 241

Query: 236 ------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                             +      KLL          F +     +     +   +   
Sbjct: 242 ETSNRVITVNSKLAKMLADWKLAQSKLLPAISTKDLVVFQHKTSHPIRENFGTKKIQRIC 301

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIK 334
            +  V     H  R     +  D G     +    G  ++    +TY     ++ R    
Sbjct: 302 KRCAVHPIRLHDFRHSHVALLIDNGENITVIKERMGHASITTTIDTYGHLFPNKQREMSD 361

Query: 335 NSRRI 339
               +
Sbjct: 362 KLDFL 366


>gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
 gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483]
          Length = 390

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 110/388 (28%), Gaps = 57/388 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPY----------------PHESTFI 44
            L+ P  +  +    G    Y   + KG  +   L                         
Sbjct: 9   KLKEPIKIRLKSLADGNKSIYLDIYYKGVRKYEYLKLYLVPEINPVCKEQNKQTMAIAER 68

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                         +   + ++    L   I +Y +      +  ++          + +
Sbjct: 69  IKAERIKALHGHGIQDWETVKQGSMLLTTWIKKYCEGGV--GIKKSTLHCRVEMLHTVEK 126

Query: 105 KS-----GDFDYRKITTKHIR--------------SGVESRKHTPSSAIQFLTSMRVLFK 145
                  G     ++  +  R                 E R  + ++A ++L        
Sbjct: 127 YLDETNKGFIALEEVNAEFCRGYVKFLRNFPNSHIKYGEPRPISENTASRYLGMFSTALN 186

Query: 146 WAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            AVRQ  +  NP       ER + K       T E+++   +  S   + + AF F  ++
Sbjct: 187 NAVRQGIIRNNPMKELDARERIQPKEGKKEYLTIEELRTLIATDSYRPEVKEAFIFACFT 246

Query: 203 GLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
           GLR SD  R    H+            ++ QKT   + + L +   + L         FF
Sbjct: 247 GLRLSDMYRLAPMHIFKTADGKGEYIDMEMQKTEKPVIIPLSEEAKRWLPKPRGNDIPFF 306

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                     T         A  AG+ K  S H  R    T+    GA         G  
Sbjct: 307 DI----PTTQTVIGRALHKWAEAAGIEKHISFHCSRHTFGTMMLTLGADLFTTSKLMGHS 362

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSV 342
            +   E Y K  D+ +   +    I  +
Sbjct: 363 NIQTTEIYAKIVDKKK--EEAINLIDGM 388


>gi|116511115|ref|YP_808331.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116106769|gb|ABJ71909.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 398

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 114/381 (29%), Gaps = 62/381 (16%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + + +T+ G++ Y  R          G+++R      +            +   +    
Sbjct: 5   NIKEYKTKSGEVRYILRGAYIGTDVLTGKQVRTDVRGRTKKDVKTKLQRLQNDFIKNGCM 64

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121
              K+  T   +   +       ++  +S     S  ++ I+   G+    ++TT  I+ 
Sbjct: 65  KKEKQLKTFAEVAESWFDMYQ-HTVKSHSIEIMRSNLNRYILPAFGNTKIDRLTTSQIQL 123

Query: 122 GVESRKHTPSS----AIQF-----------LTSMRVLFKWAVRQEYVAINPCLSVERPK- 165
            V             A++            L     +FK+A+    V+ NPCL+V  P  
Sbjct: 124 QVNRWAKNAGQPLNGAMRRNKGNAKGYKLLLNVTNRIFKYAISMGLVSSNPCLTVIVPNV 183

Query: 166 ---------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                    +     +  +  D  +        ++ R     L  SGLR  ++       
Sbjct: 184 KMETTEREVKHFNKEQLQSYFDYMESLPNTWVNNELRAICRLLTASGLRIGEATALSWSD 243

Query: 217 LQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           +               +       +   +   V +    +  L    + ++++F+   + 
Sbjct: 244 IDFEKQTISVSKTTTGHQTIQDTPKTKHSKRVVIIDSKTISHLQRWHLYQKSYFLKLGQP 303

Query: 263 KMN------------ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309
             +              +     +A      + +   HG R   A++  +AG +  E+  
Sbjct: 304 NQSLIFPTNQGKILDYQRLRKSLQATFKATELHDIGFHGFRHSHASLLLNAGVSYKEIQT 363

Query: 310 TYGWKTVDQAE-TYTKGADRI 329
             G  ++      Y+      
Sbjct: 364 RLGHASIKMTMDIYSHLEKEK 384


>gi|256751913|ref|ZP_05492784.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749218|gb|EEU62251.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 403

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 127/392 (32%), Gaps = 70/392 (17%)

Query: 18  HGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLK 72
            GK      Y    G+G+R       E          L     + +    P  +   T+K
Sbjct: 13  KGKKYKISFYIGTDGNGKRKYYIETIECKNKAEAQKYLAKKIVEYDTGTLPIDETNITVK 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KH 128
             + ++ ++    SLA+ +   +E      I    G++   K+T   I++   +      
Sbjct: 73  DYLKKWLETKK-SSLALKTYNDYEQKIRLYIDPAIGNYKLLKLTPLIIQNMYNNMLEQGL 131

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +     T +    K A++ + +  NPC     PK+  + ++  T E  ++F      
Sbjct: 132 SARTIRYTHTVLNEALKQAIKWQMLRYNPCDGTTLPKQAKKEMKVLTPEQAKKFLEACVY 191

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ----------------HLQNNIFSIKTQKTGTI 232
             +  + FE LL SG+R S++     +                 ++NN    + +   + 
Sbjct: 192 N-RWGILFELLLISGMRPSEALGLKWEDIDWKNNRIAVQRTLTRVKNNWQLKEPKTPQSR 250

Query: 233 ITVELPDGFM------------------KLLAMTPIGKETFFINNDKQKMNATQF----- 269
            T+ LP   M                  + +       +      +++  +   +     
Sbjct: 251 RTIPLPREVMNDLKEHRKQQSEEKLKAKEYINYDKDKNKFKPEKWEEKLKDPKVYVDYGL 310

Query: 270 ----------------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
                             +FK     AG+     + +R   AT+   AG     +    G
Sbjct: 311 VFATETGRPLDLANINYQYFKPLLKNAGLPNIRLYDLRHTCATLLLLAGENPKVVSERLG 370

Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
              +    +TY+       +  + ++++  ++
Sbjct: 371 HANITLTLDTYSHVLPT--MQEEATQKLKQML 400


>gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107]
          Length = 221

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             RK + S   Q + +++    +   +          +ERPK++       ++E+  +  
Sbjct: 1   MERKVSISYQNQAINAIK----FYYERVLGGQRKTYFIERPKKEKTLPVVMSEEETIRVL 56

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               E  + +     +  +GLR S+     ++ + +    I+ +++              
Sbjct: 57  RAI-ENVKHKAILMTIYSAGLRISECINLKIKDIDSKRMQIRIEQSKGKRDRYTILSEKT 115

Query: 244 LLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           L+ +     E    +   +       ++      FKA   KA + K  + H +R   AT 
Sbjct: 116 LIILRTYFMEYKPKDYLFEGQKGGAYSSRSIQNIFKAAVLKAKIQKEVTVHTLRHSFATH 175

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G +   + +  G  +    E YT    +
Sbjct: 176 LLENGTSLRYIQSLLGHSSSKTTEVYTHITTK 207


>gi|251783070|ref|YP_002997373.1| putative phage integrase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391700|dbj|BAH82159.1| putative phage integrase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 408

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 100/374 (26%), Gaps = 53/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+G   +G +      +  T   A    L     K E 
Sbjct: 25  KTKYP-NIFWYVTLKGK-RYYIRRGYYLNGEKKEATESNIKTIREA-RLILAEIERKIEN 81

Query: 61  INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                 K  T+      Y  +    G+ + ++ +   + F   I  K G+     I    
Sbjct: 82  NEFAYNKNLTVDEYWEIYVDNRLKAGAWSPDTYVERTNIFKNHISSKFGNKKMNAINRIE 141

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRP 173
             + + +    ++ S+         ++   AV+ + +  N    ++      +     R 
Sbjct: 142 YENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRS 201

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229
             +       +                  GLR S+     + ++  N       K     
Sbjct: 202 MQEFKAWDKIAREMLDDYDYAMVRITYL-GLRRSEVAGIKLGNITFNDKDCAVVKIDESR 260

Query: 230 -------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------- 262
                         +   V L     +LL           + ND+               
Sbjct: 261 TRGRKDGGSLKTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 320

Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    + +      FK       V+ + H +R F AT    AG     + A  G  
Sbjct: 321 VKPSFVGKPIGSHYIYCLFKKINKNCDVHFTPHMMRHFFATQGQIAGVPIEHMAAALGHS 380

Query: 315 TVDQAETYTKGADR 328
                  YT   D 
Sbjct: 381 NNYMTSQYTHIKDE 394


>gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
 gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC
           49176]
          Length = 366

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 103/340 (30%), Gaps = 33/340 (9%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  +Y+    G R +       T   A                S           +  Y 
Sbjct: 16  RSQFYYTDRTGARHKKNKRGFKTKREA------QQFEAEFVRISKADMDMKFASFVEIYL 69

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           K      L   +  +     D  +I   G+    +I    I +  ++ K     +  +L 
Sbjct: 70  KDKEV-ELKQRTLRNKRYMIDTHVIPYFGEKKMNEIMPADIIAWQKTIKENNEFSEAYLR 128

Query: 139 SMR----VLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPR 193
            ++     +F  AV+   + +NPC SV++  R  +  I  WT ++ Q F   +   S   
Sbjct: 129 MLQNQVTAIFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIRTYDTTSMHY 188

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVEL 237
           L FE L ++G+R  +     +  +     SI   KT                    TV +
Sbjct: 189 LMFEILFWTGMREGELLALTMNDIDFTQMSIHISKTYYRMNRQDIITEPKTDNSVRTVAV 248

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
           P   M  +         +  +     + A       K    KA V     H +R      
Sbjct: 249 PKFLMDDIKCYYERLYKYPRDARLFPIVAEALQHSMKRHTAKADVKPIRVHDLRHSHCAY 308

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKG--ADRIRLGI 333
               G     +    G K +     TY     +++ ++  
Sbjct: 309 LIHQGIQPLLIKERLGHKDIRITLNTYGHLYPSEQKKVAD 348


>gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01]
 gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01]
          Length = 320

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 85/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I         K+    +   +         A++   
Sbjct: 10  KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAIDEKVAVKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +         + ++  +  ++   + +     T+ +++  +       + +L  +
Sbjct: 70  LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRNEVR--RFVQHIDPKYKLHIQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  +Q +  +  +++                                
Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVNLTRDY 187

Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +                        +  L   T +  +       +  +N +  
Sbjct: 188 YQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSIDADTGEFRRHHVNESAI 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  A  AG+ K  + H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 403

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 101/365 (27%), Gaps = 57/365 (15%)

Query: 15  RTRHGKI---IYYFRKGHG------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             RHG        FR   G      + + +P         A  +A              +
Sbjct: 5   VKRHGTFWQARVRFRGADGTIQEKSKSLGIPCAAGRGKKVARAAAEKWVQDAGFVEVVEQ 64

Query: 66  KKPTTLK----WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            + T L          Y KS      +   +  S+++    I    G+   ++IT   + 
Sbjct: 65  NQATRLDCSAYTYCLNYFKSLVATQQIERRTYTSYKNNVRYIDLFFGEKRLQEITVTDVE 124

Query: 121 SGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V     +  +A     +    R   + AV    +  +PC +++ PK       P  + 
Sbjct: 125 LYVSWLYDSGYAANTVKKAFNSFRACTRHAVAIRDLQYDPCAAIKAPKGYLAPPNPLNEP 184

Query: 178 DMQ--QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
             +  Q      E S   LA     Y+G+R  + C    + ++     +           
Sbjct: 185 SRKKLQVMLSALELSPMVLATYLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYD 244

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------- 264
                          TV +P   + +L           +                     
Sbjct: 245 GGKTYIKGLKNGKDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEMYVLGDFSGEYL 304

Query: 265 NATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              + + W+K+ + + G+  +       H +R   ATI+              G   ++ 
Sbjct: 305 RPERATAWWKSHSEEWGLLGTQGRRPVFHDLRHTYATIAV-RTMDIKSAQDILGHSDINM 363

Query: 319 AETYT 323
              Y 
Sbjct: 364 TMRYA 368


>gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 318

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 89/301 (29%), Gaps = 33/301 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+  +  Y +     +L+  +R  +    D  +  S    G+     I    +   +  R
Sbjct: 12  LQRWVVAYMQEITNKNLSGRTRDIYAGILDDFVEHSRQFQGELGIEDINRIFLNGYLAER 71

Query: 127 KHTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGI 171
            +T       +    +T ++  F +         +     ++          P    + +
Sbjct: 72  GNTGRRFSATTKKLHITVLKTFFLYITENNDNNHDFEKMFKKMNIKSESNEKPALNEDDV 131

Query: 172 RPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
           +       +  ++  ++ +  R  L  + +L+ GLR  +     ++ +  +         
Sbjct: 132 QRLLNYLEKIKRARRNQNTNIRNTLLCKIMLFGGLRAVELTHLRLKDMVYDKEDDIYSLL 191

Query: 227 ------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                 ++    I   L +  ++ L      +       +   ++ T           +A
Sbjct: 192 IEGKGGKQRTVYIPRTLIEDEVETLKEEYGEEWLICSTRNGTIVDRTNLYQIITGIYKRA 251

Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG-ADRIRLGIKNSR 337
           GV+ +  H +R   A    +       +    G   +      Y K   +  +  I    
Sbjct: 252 GVDHTGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENNKKAAISRLM 311

Query: 338 R 338
           +
Sbjct: 312 K 312


>gi|15923382|ref|NP_370916.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978720|ref|YP_001440979.1| integrase-like protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005188|ref|ZP_05143789.2| integrase-like protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257878702|ref|ZP_05658355.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|261206968|ref|ZP_05921657.1| Int459 [Enterococcus faecium TC 6]
 gi|282926486|ref|ZP_06334117.1| integrase-like protein [Staphylococcus aureus A9765]
 gi|289168180|ref|YP_003446449.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|289565395|ref|ZP_06445845.1| phage integrase family site-specific recombinase [Enterococcus
           faecium D344SRF]
 gi|294615418|ref|ZP_06695290.1| integrase [Enterococcus faecium E1636]
 gi|304380399|ref|ZP_07363079.1| phage integrase family site-specific recombinase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|13274514|gb|AAK17958.1|AF329848_10 Int459 [Clostridium perfringens]
 gi|14246160|dbj|BAB56554.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720855|dbj|BAF77272.1| integrase homolog [Staphylococcus aureus subsp. aureus Mu3]
 gi|257812930|gb|EEV41688.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|260078596|gb|EEW66298.1| Int459 [Enterococcus faecium TC 6]
 gi|269939969|emb|CBI48342.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|282592206|gb|EFB97226.1| integrase-like protein [Staphylococcus aureus A9765]
 gi|288907747|emb|CBJ22584.1| site-specific recombinase, phage integrase family [Streptococcus
           mitis B6]
 gi|289162885|gb|EFD10735.1| phage integrase family site-specific recombinase [Enterococcus
           faecium D344SRF]
 gi|291591700|gb|EFF23337.1| integrase [Enterococcus faecium E1636]
 gi|302179991|gb|ADK98559.1| phage integrase [Enterococcus faecium]
 gi|304341074|gb|EFM06994.1| phage integrase family site-specific recombinase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315035976|gb|EFT47908.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
 gi|323465494|gb|ADX77647.1| integrase [Staphylococcus pseudintermedius ED99]
 gi|329313108|gb|AEB87521.1| Integrase -like protein [Staphylococcus aureus subsp. aureus T0131]
          Length = 397

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 111/346 (32%), Gaps = 49/346 (14%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           ++ ++G   YYFR        G++I   R  +  +      Y   L      +    S  
Sbjct: 7   KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSEN 60

Query: 66  KKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   T K  I   +        + + +  +      +            I    +++   
Sbjct: 61  KDKMTFKHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQL 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  S   ++ +++ LF  A+ +  V      NP   +   K++   I  WTKE+ +
Sbjct: 120 KLSKKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN----------------- 219
           +  S   +    +      L+    +G+R  ++     + +                   
Sbjct: 178 KVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQS 237

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
           N   ++ +   ++  + L    +  L+     ++      F ++ +         S   +
Sbjct: 238 NYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIE 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A  AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 298 RYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 322

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 81/281 (28%), Gaps = 31/281 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--------SRKHTPSSAIQFLTSM 140
             S+ + E     +    G      +  + +R G          S++ +P++   +L+  
Sbjct: 36  PASKRTGEKALRSVAASLGYESPDAVPWETLRRGDALDLRDELVSQELSPATQSLYLSVF 95

Query: 141 RVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           R +               Q    +       +P+ +               +     G +
Sbjct: 96  RGVMHEVWVAGRISGDEFQHIREVKAAKGKRQPRGRAVAEDEMDCFTQHLERDRTPIGIR 155

Query: 192 PRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                  L  +G+R S+     +   +      +   K     T  + D     L     
Sbjct: 156 DAALVNVLYSTGMRRSEVVDLRIGDLVPEEKAVLIRGKGNRERTGYMDDVAWDALNHWID 215

Query: 251 G-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISA 298
                             +   ++M+    +   + ++ +A +  +  H +R+  AT   
Sbjct: 216 EVRGERDGPLFLPMARGGHIQWRRMSDQAVAKVVRERSMEAAMPPTLPHDMRRSFATQLL 275

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRR 338
           D G     +    G  +V   + Y + +D   R  +   RR
Sbjct: 276 DNGTDLLTVQRLMGHSSVTTTQIYDRRSDAASRAAVDGLRR 316


>gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
 gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC
           43184]
          Length = 406

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E   + P           +
Sbjct: 134 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 193

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R + +  NP   ++R +         ++E++ +      E   
Sbjct: 194 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 253

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 254 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 311

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     +           K     AG+ K  + H  R    ++  + G     + A
Sbjct: 312 LGERHEGLIFEGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 371

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G K +   + Y+K A +     +   +I
Sbjct: 372 YMGHKNITTTQIYSKMAAQQ--MCEVVDKI 399


>gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 271

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 14/248 (5%)

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +   + IT   I   V+  +       A       + + ++A+  + +  +PC  V    
Sbjct: 25  NIKPKFITKDMIVQFVDYLQSRSVGEGAKSIYQRFKKVIRYAIEHDVILKDPCKEVICKV 84

Query: 166 RKTEGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                 +      +        + +E    R AF F LY GLR  D      +++  +  
Sbjct: 85  DDPMLRKDVLSLEEIQSLINCHYENENPMVRRAFIFCLYFGLRFCDVKDLTYKNVDYSNK 144

Query: 223 SIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
            +K ++  T          + L       +                      S   +   
Sbjct: 145 LLKFEQNKTKGHSSASGVVIPLNDGLLSIIGEAPANGNKDVLIFDLPTYESCSKSLRRWV 204

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +AG++K  S H  R   A    + GA    +    G   +   + YT+  D  +L  + 
Sbjct: 205 KRAGIDKHISWHCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTRAVD--KLKEEA 262

Query: 336 SRRISSVV 343
              +  + 
Sbjct: 263 INSLPELK 270


>gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 288

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 14/267 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K  T+K L+  + +S   G ++ ++   +  Y   ++   GD +   ITT  + +   
Sbjct: 3   TNKTPTVKELVDVFLESQK-GFISDSTLRWYVFYLRPLVAHLGDRETNSITTSDLINLFH 61

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +     P +   F+   + LF+WAV + Y+A+NP   + RP    +       ED+ +
Sbjct: 62  LMRTDDREPYTLFNFIRGWKRLFRWAVDEGYIAMNPAKKLRRPPLPQKSPAGIQAEDLSK 121

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIIT 234
                S+     +      F+  +G+R        V  L  N        K +       
Sbjct: 122 MLDAASKTGTPERDLALVLFVADTGVRLGGVAGLTVDRLDINKRRAIVLEKGRGGQKERV 181

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           V         L      +           +        FK  A K+ +    + H  R  
Sbjct: 182 VFFSSRTAIALENWLEKRGETEDQRVFL-LKPNGIYQLFKRLARKSEITGKWNPHSFRHA 240

Query: 293 SATISADAGATAHELMATYGWKTVDQA 319
            A      G +   +    G   V   
Sbjct: 241 YARKLLAEGVSIGIVSHLMGHSNVQVT 267


>gi|307292243|ref|ZP_07572107.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306496749|gb|EFM66302.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 348

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 90/325 (27%), Gaps = 25/325 (7%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R            HG+  +L     S       +             + R   TT    
Sbjct: 6   KRGNSYRAQISLYNHGQHKKLTKSFSSKKEATRWALENELEKGNGKQLAER--TTTFADF 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
              +        +   +  +++     + +  GD   + +    ++  ++     H+  +
Sbjct: 64  FENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDKYAETHSRKT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  ++   + A  + Y+A +    V+   +  +           +    +    + 
Sbjct: 124 THEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKLRTYVINHRE 183

Query: 193 R---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVELP 238
               +     L +G+R  +      + L      ++            +   +   + + 
Sbjct: 184 NEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTKNSRRDISIN 243

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
                +L   PI    +F + D  + +A            K  + K+  HG+R   A+  
Sbjct: 244 QEVYDILKSVPIKDNGYFFDPDGFQQSAK-----LARLLKKLDIPKTTFHGLRDTHASFL 298

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
                    +    G   +   + Y
Sbjct: 299 FSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
 gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974]
 gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69]
          Length = 388

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/386 (13%), Positives = 117/386 (30%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+ + + G I+Y            G++++          + A          K      
Sbjct: 3   ITEYKKKDGSIVYRSSIYLGTDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKDGSTVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++  ++ +  +      ++   G++   K+T   I+  
Sbjct: 63  KAVEIKTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQ 121

Query: 123 VESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +         +  + + K+AV  + +  NP   V  P+RK +  +   
Sbjct: 122 VNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQ 262
            KT      IT       ++++                         +  E  F N+  +
Sbjct: 242 NKTLNIIKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDK 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            ++A   S        +AG  + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 HIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMD 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
            Y+  + D  +           ++ S
Sbjct: 362 IYSHLSKDNQKNATSFYEKAIEKLKS 387


>gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1]
 gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
             +V+++ ++     ++ R        ++    I+      +  R  + SS  Q L ++ 
Sbjct: 16  GFSVSTQRAYLYQLTEVARYF-RMPPDRLNQTDIQQYLLYLIRERGWSWSSCRQALHALN 74

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L++    +   +++     +     ++ I      D  Q      +  +  +A      
Sbjct: 75  FLYRKVANKTMPSVSLPHPNK-----SQKIPDLLYPDEVQAMIRCCQHPKVYVAMVLAYT 129

Query: 202 SGLRCS--DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +G+R S  +  R     L ++   ++  K      V  P    ++L       E   +  
Sbjct: 130 TGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYEPCDVVV 189

Query: 260 D----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                 + +++    +  K  A +AG+ K    H +R   A     AG     L A  G 
Sbjct: 190 YGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLAGMPLLRLQALLGH 249

Query: 314 KTVDQAETY 322
           K +     Y
Sbjct: 250 KQIQTTFRY 258


>gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
 gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552]
          Length = 317

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 79/291 (27%), Gaps = 37/291 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126
              +  E+     + S+  ++   +E+   + + ++  + +  +I+ K + S        
Sbjct: 6   FNEVAKEWLIIKKF-SIKYSTYTKYETIITNHLNKQFNNMNINEISEKIVISYFNDLLNN 64

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  S+       ++ +  +A ++     N    ++  K+    I+  T +  +Q + +
Sbjct: 65  KIYATSTIKTLRYVLKAILDYAQKKYNFNNNSFQYIK-LKKSKPVIKILTLKQKKQLEQY 123

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
                +   L     LY G R  +        +      I   +T               
Sbjct: 124 CFNHQKNYTLVIILSLYGGFRLGEVAGLKWCDVDFENHCISINRTIERLKTTNSNSKTTL 183

Query: 233 -----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                        V +P+  +  L      +      N     +            F   
Sbjct: 184 MALDPKTHTSKRIVPMPEFIIDFLIKYYKKQSNPKKQNYIYTNSIKIPDPRNIQYHFHKI 243

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                   + H +R   AT           L    G   V    E Y   +
Sbjct: 244 CNTLEFKCNYHTLRHTYATNCVMNDIDIKSLSEMLGHSNVSITLELYVHSS 294


>gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 323

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 22/286 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKI 114
           K       +    T+     EY     +      +  S E ++  ++ K    D D  KI
Sbjct: 5   KLRAFREVKNYTRTVSDCYMEYMNYCKYRGQREGTIKSKEGFYKYVLPKMISVDEDITKI 64

Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T   +   V S         +   F+  ++    +  +++Y+        + P    E  
Sbjct: 65  TESMVLIHVNSMIDRGLKGGTYSTFVVKLKAFLTYCFKRKYLQEFEV---KIPNVVLEKK 121

Query: 172 RPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +T++++    +  +  +      +  +   F + +G R        V+ +     SI 
Sbjct: 122 AVYTEDEINILLTKPNLNTCVIGDYRSYVMIAFFVGTGCRSETILNVRVKDINFEKDSIL 181

Query: 226 TQKTGTIITVELPDGFM---KLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKAT 278
                T     +P       +LL              F   D  +M+       FK    
Sbjct: 182 FSHMKTKRQATVPMSKFLRGELLEYINNMNLKHNDLLFPKIDGTQMSYDTMHQNFKNYFK 241

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +     +  R   AT+    G   + L       T+   E Y 
Sbjct: 242 HCNIKMHGVNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYI 287


>gi|226948714|ref|YP_002803805.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
 gi|226841697|gb|ACO84363.1| phage integrase [Clostridium botulinum A2 str. Kyoto]
          Length = 349

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 89/295 (30%), Gaps = 23/295 (7%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
                +              + L++ Y        +   +    +   D +I     D +
Sbjct: 39  AKDYERDFLNKQKNDPGINFENLVNIYLDDIK-NKIRFTTFRQKKLIVDLKIAPYFKDIN 97

Query: 111 YRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              IT  HIR          ++ +        +  +F +A+R   ++ NP +      +K
Sbjct: 98  LNNITPNHIRKWQNKIMENDYSDTYLRTINNQLSAIFNFAIRYYNLSSNPVVKAGPMGKK 157

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              +  +   +  +    + +    +LAF+ L ++G+R  +      + +  +   I   
Sbjct: 158 NADVMQFWTVEEFKTFIEYVKKPIYKLAFKILFWTGIRSGELLALTYKDIDLDRKIININ 217

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           K                      V + D   + +            N     +     + 
Sbjct: 218 KNYARINKKDIINPPKTLKSKREVTISDFLCEDIKEYKNKIYNLNENERIFTIAKQNINA 277

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                  K+G+ K   H +R   A++  + G T   +    G + ++    TY+ 
Sbjct: 278 QLNRTCKKSGIKKIRLHDLRHSHASLLIELGFTPLLISERLGHENIETTLNTYSH 332


>gi|218295944|ref|ZP_03496724.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243682|gb|EED10210.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 391

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 55/373 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRI------------RLPYPHESTFIPAYMSALTGSTPKREY 60
           K R + G  ++Y   G G+ +            +L              AL     ++  
Sbjct: 2   KRRGKGGGSVFYHE-GKGKWVAQLTWVDPATGRKLKREKHCATRKEAEQALAQMVAEQAR 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111
                    T +    EY +      L  NS    +      +            G    
Sbjct: 61  GVLMDPSRLTTRDFALEYLRRLEREGLRPNSIRLAQGELAYALPSLKDPKAHDPLGRMRL 120

Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA NP  +++    K 
Sbjct: 121 QEVKPVHVRAAVDRVIEAGYAPRTVARVLMRLKALFREALRLELVARNPAEAIQVRLPKG 180

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           E      + +        +E S+ R   L    +L +GLR  ++       +      ++
Sbjct: 181 EKAARALEPEEVARLLEAAEASRSRDMALLLRLMLETGLRRGEALALQWGDVDLERGEVR 240

Query: 226 TQKTGTIITVELPDGFMK-------------------------LLAMTPIGKETFFINND 260
             +    +  +     +K                         L  + P   +   +   
Sbjct: 241 VWRAWAKVGSKGAFTPLKTPTAKRVVPLPLGLLRRLKARKEELLERLNPEEVDGLHLVGG 300

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
            + ++   F+ + +  A KAG+ +   H +R   AT++   G     +    G  +    
Sbjct: 301 VKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGIPLEVVSERLGHASPTIT 360

Query: 319 AETYTKGADRIRL 331
              Y    +  R 
Sbjct: 361 LNVYRHLLEEERR 373


>gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
 gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC
           29799]
          Length = 327

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 68/257 (26%), Gaps = 12/257 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAI 134
           +  +      +  +   +      ++            +   K++     +RK +  +  
Sbjct: 56  FINAKRIEGCSEKTLSYYRQTIVSMLSGIDKEPQEIVTEDLRKYLTEYQANRKSSKVTID 115

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +   F W   ++Y+  +P   + + K        +T E ++  +       +   
Sbjct: 116 NIRRILSSYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEALEIMRDNCC-NVRDLA 174

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKE 253
             + L  SG+R  +        +  N               V         L      + 
Sbjct: 175 MIDLLASSGMRVGEMVALNRDDINFNERECVVFGKGSKERIVYFDARTKIHLLNYLESRT 234

Query: 254 TFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                          ++         +    +  + +   H  R+  AT + D G    +
Sbjct: 235 DTCSALFVSLTAPHDRLQIGGVERRLRELGKRLHLPRVHPHKFRRTLATSAIDKGMPIEQ 294

Query: 307 LMATYGWKTVDQAETYT 323
           +    G + +D    Y 
Sbjct: 295 VQQLLGHQKIDTTMHYA 311


>gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
 gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114]
          Length = 302

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             +  ++  ++        R + ++     ++   I +      +     P+S  + L +
Sbjct: 17  RGVGNHTLRAYAQDLRTFARFTKEYHLADPLSKDDILAYHSHLRDELHAKPASIERRLVT 76

Query: 140 MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----- 193
           ++  F W   +     +P   V    +      RP  +E ++      +  +  +     
Sbjct: 77  LKSYFAWRADRNSALPSPFADVRISVRIPRRLPRPVDRETLKAVLQSETGPTGAQPADQE 136

Query: 194 ---LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP 249
              L  + L+ +GLR S+     +  +  +    I   K      V +P+  ++ +    
Sbjct: 137 VTILMIKLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKERMVFVPNAELQEMFRRY 196

Query: 250 IGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                           N   +++ +  F    +  + + G+  + + H  R  +AT+  +
Sbjct: 197 CADRVRHDSLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGITPHLTPHRFRHSAATLLIE 256

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
            G     + A  G  ++   E Y + ++   R  ++ + 
Sbjct: 257 EGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERAD 295


>gi|194466460|ref|ZP_03072447.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453496|gb|EDX42393.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 365

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/360 (10%), Positives = 89/360 (24%), Gaps = 34/360 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             R  K             R      +                +       +K       
Sbjct: 5   VKRGKKWQARISWYDDENKRHFKTKSNFPTKKLAQIWAADNENKLNKGIDIEKSVVFTDY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
             ++ ++     +A  +   +      +    G    ++IT    +  +     T +  +
Sbjct: 65  YDQWVETYKSPKVADVTLARYNITSGALKSFFGKTKIKEITRDTYQQFINEYGATHASHT 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSEGS 190
                  +R   + A+  +Y+  +    VE      +   +   +K++++       E  
Sbjct: 125 VKMVNGIVRACVRSAILDDYLIKDFTQGVELISNPDKTLKVEYLSKKEIEALLKAAVEND 184

Query: 191 QP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
                  R      +Y+G+R S+        +     +I   K+                
Sbjct: 185 DRSMYASRYMIATAIYTGMRLSEIQALTWNDINWLKQTISITKSWDANKHDFKPTKNKSS 244

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286
              I V      +             F+        +   +   K   ++  ++K     
Sbjct: 245 VRTIKVNQNLLNLLSRLRQRHISNMVFMTQFGSIPTSNAVNKVLKKLLSQLKIHKEGFHF 304

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG-----IKNSRRIS 340
           H +R     +    G   + +    G   +     TY    D  +       I    ++ 
Sbjct: 305 HSLRHSHVALLLADGVDIYAISKRLGHSEISTTTNTYAYLIDEYKSKTDEEIINALEKLE 364


>gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 364

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 115/362 (31%), Gaps = 40/362 (11%)

Query: 13  KERTRHGKIIYY---FRKGHGRRIRLPY-----PHESTFIP----AYMSALTGSTPKREY 60
           ++R ++ KI  Y   + KG  +   L       P   T           A T    ++  
Sbjct: 6   RQRKKNDKISLYLDYYHKGKRKTEYLRLYLTPNPKTKTEREVNKKTKQLAETICAQRQIE 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSG-DFDYRKIT 115
           I +       ++ L   +       +   N+      ++ S    + +    D  ++ I 
Sbjct: 66  IQNGIYGFQDIEKLKGSFITYITALAEKKNTSSGNYGNWNSMLKHLKKFCPTDVSFQDID 125

Query: 116 TKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +    E            + + +S   +        K AV+   + +NP   VE  K
Sbjct: 126 KSFVERFKEYLDKEAIGRAGKQLSQNSKYSYYGKFSAALKQAVKDGILKVNPANGVEYFK 185

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           +        T +++Q+  +   E    + AF F   +GLR SD  +     +Q++     
Sbjct: 186 QGEPQREFLTLDELQKAVNTECELPILKNAFIFSALTGLRWSDIEKLIWSEIQHSKEMGY 245

Query: 226 TQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             +     T       + D    LL       +  F        +  +   W       A
Sbjct: 246 YIRFRQKKTKGVETLPISDQARNLLGEKGNPDDKVFDGLHYSAWSNLKLQQWMMK----A 301

Query: 281 GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           G+ K+   H  R   AT+    G   + +    G K +   + Y K  D  +   + + R
Sbjct: 302 GITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKVIDDKK--KEAANR 359

Query: 339 IS 340
           I 
Sbjct: 360 IQ 361


>gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
 gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8]
          Length = 326

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 93/246 (37%), Gaps = 18/246 (7%)

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +++    + R++  ++  +  TS++  +++ A +   ++ +   S+E P  K    +  T
Sbjct: 81  QYMVWLKDERQNGVAARARKTTSLKQFYEYLANKSHLISKDNISSLEVPNVKRALPKYLT 140

Query: 176 KEDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232
            +++Q            +        L  G+R S+ C   +  +     +++   K    
Sbjct: 141 LDEVQTLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDIAFENKTLRLLGKGRKE 200

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGVN 283
             + L D  +K +      ++ + +  +         K +++  +     +     AG+ 
Sbjct: 201 RIIYLNDNCIKAIEQYLPYRKNYEMAQNEKALFLSSRKNRISRRRVQKIIEECIFAAGLK 260

Query: 284 ---KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
               + H +R  +AT+  +  G     +    G ++    E YT  G+D+++  +     
Sbjct: 261 NTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMED 320

Query: 339 ISSVVD 344
           +    D
Sbjct: 321 LLKKKD 326


>gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R]
          Length = 393

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I+ +R      SL  +++ +  S  + +     D  + ++T + I S     +      
Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166

Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L +       ++            + K         + E++ + +S    G
Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD      +++               +           
Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L           K    + +  +  + +  +      A  +G+NK  S H  R  +AT+ 
Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +G     +    G K+V   + YT   D
Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132]
          Length = 404

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
           + +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             NDK               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D  ++      ++  +
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTD--KMAQDMMNKLEGI 402


>gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 436

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 135 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFI 194

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + H   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 195 RDYQDFILMEKGHAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALS 254

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D      ++L  +  +    K  
Sbjct: 255 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKY- 313

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 314 -RRKKTNYLGRVKLLPEALVLIEKYRDDARMTLFPPQDYHTLRANMKSLRLMAGLSQDLV 372

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R 
Sbjct: 373 YHTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRF 425


>gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 394

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 83/322 (25%), Gaps = 46/322 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G RIR            + + + G   + E+   P +    L  L+  +  S H  +L  
Sbjct: 22  GPRIRKKL-RTKNEALNFQNRIMGDGARGEFEKRPARDERRLSELVRLWF-SLHGQNLK- 78

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------------------KH 128
            +        + +  + GD    +            R                       
Sbjct: 79  -TGAERLRLLEAMAERMGDPKAYRFDAAMFAQYRAERAEGQHVRSSVGRGRRKGAAGKGV 137

Query: 129 TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-W 186
             ++    L  +  +F    R  E+   NP  SV   K     +     + +        
Sbjct: 138 GANTLNHELAYLSAVFSELSRLGEWRGDNPLASVRPLKFDDAEMVCLELDQVDALLDELN 197

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +  S   L  E  L +G R  ++    V+ +   +      K+    +V +     + L 
Sbjct: 198 TRDSAAGLIAEVCLSTGARWGEAESLQVRQVHGGMVHYSRTKSSKNRSVPISKDLERRLL 257

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
                                     F+      G++       H +R   A+     G 
Sbjct: 258 AALPF---------------RSGYNTFRRAVEAVGLDLPEGQLTHVLRHTFASHYMRNGG 302

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 303 DIITLQRVLGHASLQMTMRYAH 324


>gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 350

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 359

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 82/305 (26%), Gaps = 17/305 (5%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A               +   T+    + Y +       +  +  S   Y   I    G
Sbjct: 54  QLASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSL--YLKHIEPVIG 111

Query: 108 DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPK 165
                ++ T  I   +      +P + +  +  ++ L++       Y    P   V   +
Sbjct: 112 SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGVVVKR 171

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                +R  + ++ +         S          L++GLR  +     VQH+  +   I
Sbjct: 172 VDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSLFAGLRLREIFSLKVQHVNIDARVI 231

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282
                        + +   ++LA   +G+        K         +  F        +
Sbjct: 232 AVMDAKSGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGEGMRTINQTFVRVVRDLEL 291

Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
                        H +R   A+     G   + +    G   V+    Y K A D  R  
Sbjct: 292 NDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREA 351

Query: 333 IKNSR 337
           +    
Sbjct: 352 VNQLD 356


>gi|221195318|ref|ZP_03568374.1| phage integrase family protein [Atopobium rimae ATCC 49626]
 gi|221185221|gb|EEE17612.1| phage integrase family protein [Atopobium rimae ATCC 49626]
          Length = 355

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 91/341 (26%), Gaps = 34/341 (9%)

Query: 14  ERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++   GK       GH   G+R+R      +        A+     +    ++  ++   
Sbjct: 4   DKLPSGKWRVRVEMGHDSSGKRLRAQRVVPT---KKEAKAVEHMLSELHRTDALIRERIR 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               + +Y        +   +  +++     ++   G     +I   HI+S + +   T 
Sbjct: 61  FDDFVWQYYLPYTSERVRYTTLAAYKRDIGHLLPAFGHMMVDEIDKVHIQSLINT-SSTY 119

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSF 185
             A      +R +  +AV   ++ INP  +                   T  +       
Sbjct: 120 KVAKNSRDCLRQILNYAVELGFIKINPARAKFDFPAPEIYPEEHNGTWLTTFEQHDLFLA 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
             +  + +L  E  L  GLR  +      + +      +  Q+T                
Sbjct: 180 KIDHPRFKLVAELGLGLGLRRGEIFGLDWEDIDLEKRIVHIQRTYARQEHKHELMSPKTK 239

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGVNK 284
                + L       L+     +                        W K          
Sbjct: 240 KSNRYIPLRKELAYYLSKEYELRGHPTGAVVVSPNKRRSNPVSTSQGWLKYLRENNLEEV 299

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           S   +R   AT   +AG    ++    G   +      Y +
Sbjct: 300 SILNMRHSFATACMNAGMDVTKVSKLLGHTNITTTVSRYVR 340


>gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6]
 gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 340

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 106/338 (31%), Gaps = 32/338 (9%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           ++ P  H    +      +      +E+      K   +  L+ E+ +   + ++   + 
Sbjct: 3   VKFPKTHYGDIMDDITDMILLKKDSKEHTAPNDTKKLEIDKLVDEFSEQRRFDNIKEATI 62

Query: 93  ISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145
            +        +R      +     +T +   +        R  + ++  ++   ++V ++
Sbjct: 63  SNDNDRIRVFLRYIYYTLNKTPETLTNRDYMAFFTYVKRERNCSDNTVNKYFKLLKVFYR 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGSQPRLAFEFL 199
             ++ +  +     S ER +     I+ +      T   +       + G++ R A    
Sbjct: 123 -LMKFKNFSDFVVESKERKRFSRFDIKHYDAIDEDTLNQVLVKLLKSNSGTKIRDATFIR 181

Query: 200 LY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           L   +G R S++C        L   +F +   KT    TV      +KLL          
Sbjct: 182 LLWDTGCRVSEACNLTYSASDLNKGVFKLTHTKTKQDRTVVCSKETLKLLNYFLQHDPDN 241

Query: 256 FINNDKQKM------NATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISADAG 301
              +   K       N    S  F+    +   + +         H +R   A    + G
Sbjct: 242 SPEDHLFKSANGAKLNKYTLSARFRNIVKELKKDGTVPKNQWLVIHSLRHGRAVDLLNKG 301

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +   +    G  +++    Y+   +R    +    +I
Sbjct: 302 VSIDVVKEYLGHASIETTLIYSHSTERKNKMLDQISKI 339


>gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           EDL933]
 gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7
           str. EDL933]
 gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044]
 gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125]
          Length = 340

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 101/335 (30%), Gaps = 40/335 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +LPP V                 +   +  P   ES  + A    L     K E   + R
Sbjct: 12  KLPPKVY---------------PNKYSVWKPTSRESVTLTAIEDGLAALWKKYEETVNHR 56

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T   L  ++  SA++  L+  ++  +  +  +++   G      +  +HIR  ++ 
Sbjct: 57  DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116

Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           R   + + A    +SM  ++ W   + YV  NPC  V + K K        KE       
Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSV 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    +A E       R SD      + + N+   I+  KTG              
Sbjct: 177 AP---LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233

Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATI 296
           +              N    +     F+  +      AG       + + H +       
Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL------- 286

Query: 297 SADAGATA-----HELMATYGWKTVDQAETYTKGA 326
               G +       +     G KT  Q   Y +  
Sbjct: 287 -KAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 320


>gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 332

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 95/321 (29%), Gaps = 22/321 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
               G R R       T   A + AL     +           TT++ L + Y       
Sbjct: 17  WWEDGARRRYRL-DARTRAEAEVEALDRIRRETLP-----AGATTVRDLWAAYLADRRGR 70

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    L  +R  
Sbjct: 71  PVE----RNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTC 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             WA ++  +       +ERP +     R  T  ++ +      E    +LA   LL + 
Sbjct: 127 LLWAAKRGLI--PVAPHIERPAKPAPRDRYLTHAEVSRLMEAECE-PHIKLAITVLLTTA 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            R           +      I+ +               +  ++                
Sbjct: 184 ARVGAVLELTWDRVDLERGQIRLRVDAEGPRKGRATVPINNTLRAALTAARAAALSDHVI 243

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +            F    + AG+ + + H +R  +A   A+AG    E+    G   V  
Sbjct: 244 EWAGGPVKCIRKGFLRAVSNAGLSDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQI 303

Query: 319 A-ETYTKGADRI-RLGIKNSR 337
               Y + + +  R       
Sbjct: 304 TSSVYARFSPQHLRKAADALE 324


>gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262]
 gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262]
          Length = 400

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 107/372 (28%), Gaps = 59/372 (15%)

Query: 13  KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++R+++         G    G  IR      +         L     + E          
Sbjct: 15  EQRSKN-SWRMRVTVGYDYKGTPIRADRTTRTKNERERERELRNFITELEQNGYTAPARM 73

Query: 70  TLKWLIS-EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T K  +  EY       +L V +    ++S   +     G     KITT HI + V   +
Sbjct: 74  TFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQ 133

Query: 128 H--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                +P S      ++  +F+ AV  + + INP   V  PK  
Sbjct: 134 KPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTT 193

Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 +T  +++   +    E  + ++     L SG R ++     V+H+      +  
Sbjct: 194 KRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDELTF 253

Query: 227 QKT---------------------GTIITVELPDGFMKLLAM---------TPIGKETFF 256
           ++T                        I   L +     ++               +  F
Sbjct: 254 EQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLF 313

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            N + + +        +K    +  +     H +R  SAT+  + G     +      K+
Sbjct: 314 ANMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKS 373

Query: 316 VDQA-ETYTKGA 326
                  Y    
Sbjct: 374 SVTTSNIYAHVL 385


>gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 330

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 44/304 (14%)

Query: 71  LKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITT---- 116
           + +    Y         + + N+  S+  Y+ Q +                  +T     
Sbjct: 10  VGYWFMRYLSEYIPVIKNQSHNTLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTN 69

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-- 174
             +      +  T  +  Q LT+++    +        +     +     K   ++    
Sbjct: 70  AFLNHIETDKGCTIQTRNQRLTAIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEG 129

Query: 175 -------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                            +        +G +      FL  +G+R S++    +  +  + 
Sbjct: 130 SVLPAVSYLDKREMDALLNTPDRQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDD 189

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFK 274
            S        K     T  L +  +  +          E  F+N     M         +
Sbjct: 190 ASCPLVRIYGKGNKSRTCPLWNRTLNAIKPFMAGRRETERVFLNRYGNPMTRFGIYELLE 249

Query: 275 AKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               KA            S H +R  +A    ++G     + +  G  +++    YT+ +
Sbjct: 250 RNVIKATATAPTLAKKRVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVS 309

Query: 327 DRIR 330
            +++
Sbjct: 310 LQMK 313


>gi|303251326|ref|ZP_07337504.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649868|gb|EFL80046.1| hypothetical protein APP6_0527 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 305

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 81/290 (27%), Gaps = 36/290 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           +   L+ ++     +  L  +++ S+++  + I ++  D     I    + +        
Sbjct: 6   SFNKLLEQFFFYRSY--LRPDTKRSYKNIINIIQQRFPDRSADSINNIDLITWRNEILDV 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K  P +   ++  ++ ++   ++   + I+         ++++  +    +      S+ 
Sbjct: 64  KIKPVTWNNYVRHLKAIYNVGIKYNILQISNNPFYGLFIKESKRKKKTLSKKQLDKLSYA 123

Query: 187 SEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             G+          +           +G+R S   +  +Q +  N   I           
Sbjct: 124 LNGNIVLPEMLKPSWFINCLVMTLRCTGIRRSQLVQLQIQDVDLNRRIIYISPEINKNHD 183

Query: 236 ELPDGFMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                    L                            +       + M+  Q +  F+ 
Sbjct: 184 YHIVPISDNLYPHIELLVEELRKQKQPLDSQLFNFNLFSKVTRRKGKPMSVDQVTHIFRR 243

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +   G   S H  R   AT         + +    G K +     Y + 
Sbjct: 244 ISEVVGFTSSPHRFRHTVATSLMKNPENVYVVQKLLGHKDISVTLGYIEH 293


>gi|229163442|ref|ZP_04291393.1| Integrase/recombinase [Bacillus cereus R309803]
 gi|228620011|gb|EEK76886.1| Integrase/recombinase [Bacillus cereus R309803]
          Length = 332

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 77/316 (24%), Gaps = 23/316 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           + R            +   L     K+E          T+   +    +      L   +
Sbjct: 3   KRRDSLTISEDLSNVFSDRLKNDQRKKETAEKRYTFNLTIDKALEIVVRQMKATGLRERT 62

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +  +     + +      ++   HI   + S   +  + +  L  ++          
Sbjct: 63  INDYYLHVSHFTKITDTQYLEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           ++ IN   +V+             +E                +   A   +  +G+R   
Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182

Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +   +H              ++N+              +++     +++      K  
Sbjct: 183 LAQLEHRHVDLDTKVLSIDGGIIKNHESIYLPFDDALARLLDVLMKQNEIIRSEYNVKND 242

Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +                   S      A + G+   + H +R+  A      GA    + 
Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302

Query: 309 ATYGWKTVDQAETYTK 324
              G   +     Y  
Sbjct: 303 KALGHSDISVTTRYLH 318


>gi|160947471|ref|ZP_02094638.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270]
 gi|158446605|gb|EDP23600.1| hypothetical protein PEPMIC_01405 [Parvimonas micra ATCC 33270]
          Length = 356

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 89/342 (26%), Gaps = 33/342 (9%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G    Y R    +   +   H          AL     +    +  R      +  +  
Sbjct: 9   RGTWKIYLRYVDWQ--GMKQIHTKRGFATKREALE--YEREFLASKSRDLNMLFESFVEI 64

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---------K 127
           Y        +  N+ ++     + +II         +IT   I                 
Sbjct: 65  YLNDLRPR-IKYNTYLTKVHIIETKIIPYFAKKSIAEITAPDILQWQNELLKKSDGEGKT 123

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFW 186
           ++ +        +  +   A +   +  NP     +  K K + +  WTKE+ ++F    
Sbjct: 124 YSQTYLRTIQNQLNAILNHASKYYGLTSNPAHKTAKMGKSKAQEMLFWTKEEYEKFAESV 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
                   AFE L + G+R  +               +   K+                 
Sbjct: 184 KSKPASYYAFEILYWCGIREGELLALTKDDFDLEKKILTISKSFQRLKGKDYITSPKTEK 243

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
              T++LP      ++            +       +            +GV +   H +
Sbjct: 244 SNRTIQLPQFLCDEMSDFFGMYYHLNAKSRLFNFTKSYLHHEMDRGCKLSGVKRIRVHDL 303

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           R        + G +   +    G +++     Y       +L
Sbjct: 304 RHSHVAYLIEQGFSPVVIAERLGHESISITLNYAHLYPSKQL 345


>gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
 gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium
           TW-7]
          Length = 377

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 91/346 (26%), Gaps = 20/346 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKKPTT 70
            K R R    ++ +     +  R                A+      + +     K+  +
Sbjct: 35  VKRRKRQSMDLFIYANPKDKFQRDHNKKTLDISEKIRAQAIVDLANNKHHFEDSEKQQES 94

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH 128
               + +          + ++   +ES    + R                +         
Sbjct: 95  FYSYMQQIINDKEHTD-SPSNVSLWESSLMHLKRYCEGNPLSFADFDADILLGFRTYLIK 153

Query: 129 TPSSAIQFL----------TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
              +    L            +R     A  +  +  NP   V+  K +        +E+
Sbjct: 154 HARTKSDKLLSSNTTSCYFNKVRAALNKAFHEGIIRRNPVNEVKTIKIEQNPRNYLEEEE 213

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +             + AF F   +G+R SD  +   + L         Q   T     L 
Sbjct: 214 VTALYKTECRYDVLKRAFLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQHIKTKQLQYLH 273

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                 + +   G++   +    +  + T           +AG+ K  + H  R   A  
Sbjct: 274 LPSDATMLLGTPGEDHERVFKGLKYSSYTNV--ALTQWMLRAGITKHITFHCARHTFAVR 331

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
                   + +    G   +   + YT   DR R   +    + S+
Sbjct: 332 MLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKR--KEAMTTLPSL 375


>gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 94/297 (31%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHI 119
            TL  L+  + +          A  +  ++        + I+   K  D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     +K    +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKKLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIGKYRDDTRITLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRFVE 400


>gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 617

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 30/281 (10%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP-- 130
            Y       SL  +S  S E    QI               I    I +           
Sbjct: 226 RYLDQLRV-SLRASSVASIEITLRQIAGHLISTSSVTTVADIGRPQIEAYGTWLAGRGGY 284

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDM 179
                   ++    +  +   F+  +   Y       P  S +RP +     R       
Sbjct: 285 RKNSTISKTTIGMRMCHLGAFFRRIIEWGYPDAPLRPPVFSSDRPAKDKPLPRFLDDAAT 344

Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTII 233
            +F +   E   P  RLA E L  +G+R  +        +          I   K     
Sbjct: 345 AKFMAAARELPDPFGRLAIEILARTGMRKGELLGLTTDAVVQIGSAYWLRIPVGKLHNDR 404

Query: 234 TVELPDGFMKLLAMTPIGKETFFINN-----DKQKMNATQFSIWFKAKATKAGV-NKSAH 287
            V L      ++      +  +  ++       + +  T+     +  AT AG+ +   H
Sbjct: 405 YVPLHPQLKTMIDNWLEQRPDWQNSHLLFTDRGRPIPPTRVDHAVQTAATAAGIGHVHPH 464

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   AT + + G +   + A  G KT+     Y + ADR
Sbjct: 465 QLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADR 505


>gi|331086461|ref|ZP_08335540.1| hypothetical protein HMPREF0987_01843 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410519|gb|EGG89947.1| hypothetical protein HMPREF0987_01843 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 361

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y    G  ++              +  A          +          +  +  Y 
Sbjct: 15  RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129
                  +  N+ ++ +     +I+        ++I    IR    +           ++
Sbjct: 67  NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNNMMNYRNKQGEGYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
                     +  +   AV    +  N         ++       WTKE+  +F    ++
Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
                 AFE L + G+R  +              +I+  K+                   
Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + +P+   + L            N+   +++ +            +GV +   H +R 
Sbjct: 246 RIITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  + G +A  +    G ++V+    Y  
Sbjct: 306 SHVSLLVNMGYSAVAIGERVGHESVEITYRYAH 338


>gi|290769909|gb|ADD61679.1| putative protein [uncultured organism]
          Length = 431

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/427 (10%), Positives = 114/427 (26%), Gaps = 97/427 (22%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  Y    +                      + +  T+ 
Sbjct: 7   RKKGKKWYYRFYVEDSSGNLVQKEYAGTESKSETEKLLRQAMDDYESKKFIAKSENITVG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-- 128
            L+  +  +    G+L+  +  ++      I +    +   + +T++H+++  +      
Sbjct: 67  ELLDIWAEEELKTGTLSNGTVQNYLGAITNIKKHPISERKLKNVTSEHLQAFFDLLSFGG 126

Query: 129 --------TPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      S     +    ++  F++AV  +       +   + K +T+ +  ++ +
Sbjct: 127 TYPDGSERKGYSKNYIRSFSAVLQQSFRFAVSPKQYITFNPMQYIKLKYQTDEVDLFSDD 186

Query: 178 DMQQFKSFWSEGSQPRLA-------------FEFLLYSGLRCSDSCRAGVQHLQ---NNI 221
           DM             RL               +   Y+GLR  ++C    Q +      +
Sbjct: 187 DMDGDIQPIPREDYERLIEFLQNYNPPAILPIQIAYYAGLRIGEACGLAWQDVNLEEQCL 246

Query: 222 FSIKTQKTGTIITVEL----------------------PDGFMKLLAMTPIGKETFFINN 259
              ++ +        +                       +   + L       E +  N 
Sbjct: 247 TIRRSIRYDGSRHKNIIGPTKRKKVRIVDFGDTLTEILRNARKEQLKSWMQYGELYHKNY 306

Query: 260 DKQKMNATQFSIWF-------------------------------------KAKATKA-G 281
            ++  +  +    F                                     +  A K  G
Sbjct: 307 YREVKDKNRVYYEFYHLDGTESVPEDYKEISFVCLRPDGSLELPSTLGTICRKIAQKLEG 366

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRI 339
                 H +R    +     GA   ++    G   V      Y     + +   ++++ +
Sbjct: 367 FEGFHFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR--ESAKLL 424

Query: 340 SSVVDSD 346
             V  +D
Sbjct: 425 DKVAGND 431


>gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19]
 gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3]
 gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19]
 gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 27/301 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           L   +  Y           +S  S++   +  +R  G     Y +I  + +    +    
Sbjct: 6   LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ + ++   ++  +R ++  A+       +  L            +     +  +    
Sbjct: 65  RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPTESLRLLMT 124

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                       R      L+ G+   D        ++N +     QKTGT + VE+   
Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284
             +LLA                                    F+   K  A   GV    
Sbjct: 185 AKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +++ +R   AT   + G     +    G +++   + Y K     ++   N     S+ +
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304

Query: 345 S 345
           +
Sbjct: 305 N 305


>gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
 gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2]
          Length = 333

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 80/301 (26%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+       ++ +  ++       IR  G      + +  + + +    +    S
Sbjct: 16  VLEQLRERIRCLYYSLRTEQAYVHRVRTFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L  +  +     +     + RP+         T E++   +         
Sbjct: 76  ASTHRQALAALLFFYGKVLCADLPWLQEIGRPRLSRRLPVVLTPEEVV--RIPGFLEGVH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLWVKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLA 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              F   FK    +AGV    + H +R   A     +G     +    G   +     YT
Sbjct: 254 DQTFQRAFKRAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYT 313

Query: 324 K 324
            
Sbjct: 314 H 314


>gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
          Length = 388

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 118/387 (30%), Gaps = 58/387 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS- 63
           +T+   + G  +Y            G++++       T       AL       +  ++ 
Sbjct: 3   ITEYTKKDGTTVYRSSVYLGIDTVTGKKVKTTISG-RTKRELRNKALQAQIDFEKNGSTV 61

Query: 64  -PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
               +  T   L+  + ++    ++  ++ +  +      ++   G++   K+T   I+ 
Sbjct: 62  FKAVQINTYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQK 120

Query: 122 GVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            V       +   +         +  + + K+AV  + +  NP   V  P+RK +  +  
Sbjct: 121 QVNQWAKDYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKL 180

Query: 175 TKEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---F 222
              D                  +     + ++ LL +GLR  +        +        
Sbjct: 181 KYLDDDNLKKFLTYLEQLPNTYKNFFDTVLYKTLLATGLRIRECLALEWSDIDLKNGTLD 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDK 261
             KT      IT       ++++                         +  E  F N+  
Sbjct: 241 VNKTLNIIKEITGPKTKSSVRMIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFD 300

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + ++A   S        +AG  + + H  R   A+I  +AG    E+    G   +    
Sbjct: 301 KHIDARMLSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTM 360

Query: 321 -TYTKGA-DRIRLGIK----NSRRISS 341
             Y+  + D  +           ++ S
Sbjct: 361 DIYSHLSKDNQKNATSFYEKAIEKLKS 387


>gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
 gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054]
 gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
          Length = 381

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/375 (13%), Positives = 98/375 (26%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R       Y F+    +              A                    +P TLK 
Sbjct: 5   RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSG---DFDYRKITTKH---I 119
            + +Y ++    S   N                    +   G   D    ++TT++   +
Sbjct: 63  ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRYFDLL 122

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +  ++    P++    +  +R          + V +E V      S       +     
Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182

Query: 174 WTKEDMQQFKSFWSEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
             +E   +        S+P                 FLL +G R S+        +    
Sbjct: 183 LLRELDPERLRARINASKPQTPEMTRNMQDNYDITVFLLDTGCRYSEVANTPWSAINLDA 242

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277
             I   +++     +          L       +       + +  N   +S    K   
Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302

Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AG+N            + H +R   A+    AG + +E+    G       + Y   +
Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362

Query: 327 --DRIRLGIKNSRRI 339
             D  R  +K    +
Sbjct: 363 PNDASRKAVKIIDSL 377


>gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734]
 gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734]
          Length = 391

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 103/362 (28%), Gaps = 56/362 (15%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V K  T+ GK  +  R             ++        A       R    +P  + TT
Sbjct: 3   VQKRTTKTGKTRWVARYRDKTGREHSKSFDTQREAKQYLADQRVALTRGTWANPTLEKTT 62

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF--ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           L  L+ ++            + +S        + +    D     +    IR+ V + + 
Sbjct: 63  LGTLVEDWIN--------AGTEVSRPFRVSMMRNLGDLADHPVGTLAPADIRAWVATLQT 114

Query: 129 TP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-------------- 164
                       S+    L +++++ + AV    +  NP   V  P              
Sbjct: 115 GRPWKGGAPLGVSAVSSALANVKLVLEQAVDDGLIPKNPARRVTAPAPTTRVTWHDIPTK 174

Query: 165 ----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
               +        + K +  +  S++       +       +GLR  +      Q++  +
Sbjct: 175 EQIDQLIRYARTGYGKREKGKKYSWFQAHPDLSVMIRVSAATGLRPGEVAGLRWQNVDFD 234

Query: 221 IFSIKTQKTGTI-----ITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKM 264
              +   +           ++  D  ++ L++             + +  F        M
Sbjct: 235 NGQVLVLEQAMRTGAGTRPLKTGDKGIRALSVDDETLAAINELPRVDERVFHARWGGVPM 294

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            A ++S   +      GV   + H  R F AT    AG     +    G  +     + Y
Sbjct: 295 TAEKYSQALRRLCLVVGVDPVTPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVTLDVY 354

Query: 323 TK 324
             
Sbjct: 355 AH 356


>gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida]
          Length = 320

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 78/304 (25%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----I 134
           +   +    A ++  ++  +    IR +       +    +   +    ++ + A     
Sbjct: 10  KDHMYSKRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           Q L ++  L+K  ++         +  ERP    +     T+ ++          ++  L
Sbjct: 70  QALNALSFLYKEIIKSPLSLSLDFVKSERP---RKLPVVLTQTEVSALFKHCI--TKHYL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------- 235
           A   L  SG+R  +  R  +Q +  +   ++                             
Sbjct: 125 ACALLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLV 184

Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA----------------- 266
                               LL                                      
Sbjct: 185 DNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDE 244

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            Q     K  A  A +NK  + H +R   AT    +GA    +    G   +   + YT 
Sbjct: 245 KQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTH 304

Query: 325 GADR 328
              +
Sbjct: 305 VLQQ 308


>gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6]
 gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVSDLAFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + H   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFILMEKGHAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D      ++L  +  +    K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADVVSITRENLFTDEENNLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTNYLGRVKLLPEALVLIEKYRDDARMTLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R 
Sbjct: 346 YHTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRF 398


>gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
 gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343]
          Length = 393

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I+ +R      SL  +++ +  S  + +     D  + ++T + I S     +      
Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166

Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L +       ++            + K         + E++ + +S    G
Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD      +++               +           
Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L           K    + +  +  + +  +      A  +G+NK  S H  R  +AT+ 
Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +G     +    G K+V   + YT   D
Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280]
 gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280]
          Length = 403

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 92/330 (27%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y    +GRR+R           A+     G    + ++        TL
Sbjct: 56  RKLTTGKWLCECYPAGRNGRRVR-KQFATKGEALAFERYTMGEIEAKPWLGESVD-RRTL 113

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  +      ++   G+     +T+K      + R     
Sbjct: 114 KDMVELWFK-LHGKSLTAG-QHVYNKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 170

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                     +P +     + +  +F+   R  E+   NP   + +     + +   T E
Sbjct: 171 YFSEKWKKGASPVTVNLEQSHLSSVFRELSRLGEWTLPNPLEKMRKFTIAEKEMAWLTHE 230

Query: 178 DMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + +  S          L  +  L +G R  ++       +     +    K     ++ 
Sbjct: 231 QIIELLSDCKRQNPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 290

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 291 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 342

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 343 FMMSGGNILALQKILGHHDIKMTMRYAHLA 372


>gi|290476895|ref|YP_003469806.1| Phage integrase [Xenorhabdus bovienii SS-2004]
 gi|289176239|emb|CBJ83044.1| Phage integrase [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 105/342 (30%), Gaps = 31/342 (9%)

Query: 11  VTKERTRHGKIIYYFRKG---HGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K     G   Y    G    G+ I        + +    + +       +        
Sbjct: 6   IEKRPRADGTTRYRCTVGVKSGGKYIYRENRTFGKQSHAKTWGAMRVAELEQNGVPTQND 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE 124
            +  T+  L+ +Y    + G  A  ++       + ++          +++  HI    +
Sbjct: 66  TEELTVGELLYKYINDPNLGVKAGRTKK---YVLNMLLDSDLAKLTLTELSVSHIIEYCK 122

Query: 125 SRK---HTPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            R     TPS+    ++ +  + K     + +            +          +  ++
Sbjct: 123 QRHSTGITPSTINHDVSYLTSVLKSAKPIYNIDYVSNPAYEARPLLIQMGLIGKSQRRSR 182

Query: 177 EDMQQFKSFWSEGSQPRLAFE-----------FLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +Q       EG + R +             F + S +R  + C+     +     S+ 
Sbjct: 183 RPVQDEIDNLIEGLRKRSSHREGKIPYEDILNFSILSCMRIGEVCKIRWDDIDEKQRSVI 242

Query: 226 TQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
            +              + LL     I +     +      N+   ++ F+      G+ +
Sbjct: 243 VRDRKDPRKKTGNHMSVPLLGNAWEIVQRQPKTSEWIFPYNSKSVTVGFQCVRNALGIQD 302

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 303 LRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|76812135|ref|YP_333123.1| hypothetical protein BURPS1710b_1722 [Burkholderia pseudomallei
           1710b]
 gi|76581588|gb|ABA51063.1| probable site-specific [Burkholderia pseudomallei 1710b]
          Length = 339

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 108/350 (30%), Gaps = 43/350 (12%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R    +   RK              +   A+   +     +  + +    + TT+  L+
Sbjct: 6   KRESGWMCQVRKKGYPATS-KKFATKSEALAWGRMIESEMDRGLFASRDDAERTTIADLL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
             Y        ++  ++ S  S   +   + ++ G +    +T  H+ +  ++R  + +P
Sbjct: 65  DRY-----TRDISP-TKRSGGSDMGRAGKLKKQLGAYKLTALTAPHLVAYRDARLREVSP 118

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            + +  L  +  +   A R+  V +   +      RK +G       D  Q     +E  
Sbjct: 119 QTVVHELNLLNRVLTLATREWGVVVPSGVPKVVKPRKPQGRDRRLHPDEIQAIIDATESP 178

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             R      + +G+R  +      +++        +   KT T  TV L      +L   
Sbjct: 179 DLRDFIRLAVATGMRRGELASLRWENIDLDQRTAHLPATKTDTPRTVPLSSVATAVLQAR 238

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------------------VNKSAHGV 289
                T         + A   +  F     +A                    +    H +
Sbjct: 239 KDAGYTVPF-----AVTANALTRAFCRAVQRARRLYESTCTFLERPVTSNWLIGIRLHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           R  + +   + G    E+ +  G KT+   + YT            ++++
Sbjct: 294 RHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTHL-----RAEDLAKKL 338


>gi|289450059|ref|YP_003474822.1| phage integrase, N-terminal SAM domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184606|gb|ADC91031.1| phage integrase, N-terminal SAM domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 329

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  +    + R+I T  +
Sbjct: 40  ETEEEVNAGLTNEEFLNNFLSAKRIEGCSEKSLTYYRATIESMTTRI-KKNVREIETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R       + +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKDTYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMRDSC-EELRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L     G+               +++         +    K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 393

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            I+ +R      SL  +++ +  S  + +     D  + ++T + I S     +      
Sbjct: 107 FIAFFRNEIAKSSLKESTKRNHLSTLELLRSYKKDVSFSELTFEFISSFDHYLQQKGYHT 166

Query: 134 IQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L +       ++            + K         + E++ + +S    G
Sbjct: 167 NTIAKHMKHLKRHINVAINKEYMEIQKYAFRKYKIKSVENNHTHLSPEELGKIESLELGG 226

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD      +++               +           
Sbjct: 227 RFTKLEKTKDAFLFCCYAGLRYSDFTNLSPENIVKMHQET--WLIYKSVKTNTEVRLPLY 284

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L           K    + +  +  + +  +      A  +G+NK  S H  R  +AT+ 
Sbjct: 285 LLFEGKGIEVLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLNKRISFHTARHTNATLL 344

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +G     +    G K+V   + YT   D
Sbjct: 345 IYSGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|257879743|ref|ZP_05659396.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|261209087|ref|ZP_05923490.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566304|ref|ZP_06446734.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294616983|ref|ZP_06696703.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|314940614|ref|ZP_07847744.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314942809|ref|ZP_07849625.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314953492|ref|ZP_07856407.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314992553|ref|ZP_07857972.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314997829|ref|ZP_07862737.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|257813971|gb|EEV42729.1| site-specific recombinase [Enterococcus faecium 1,230,933]
 gi|260076914|gb|EEW64638.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161880|gb|EFD09750.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291590137|gb|EFF21926.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1636]
 gi|313588144|gb|EFR66989.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313592920|gb|EFR71765.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313594474|gb|EFR73319.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313598444|gb|EFR77289.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313640201|gb|EFS04782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 388

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 112/379 (29%), Gaps = 56/379 (14%)

Query: 11  VTKERTRHG---KIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + K  T+ G    +  Y RK  +G++         T   A +          E     + 
Sbjct: 3   IQKYTTKSGARYSVRLYVRKDENGKQEYYVKKGFKTEKEAKLHEARKKVEI-EDTGYHKP 61

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
                  +  E+  S          + + + +   I+ K G+    KIT  H ++ V   
Sbjct: 62  SNDLFITVYEEWLPSYRNRVQETTYQRTKDLFRLHILPKFGNKSISKITPVHCQNAVNEW 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183
                +  Q  +    +F++A+  E +  NP  +   PKR+ +         +       
Sbjct: 122 ALKFKNIKQLKSYSSQIFEYAIFAELLHRNPMANTNLPKREKKENENYFSLEELKAFWDI 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
               E  +  L F+ L+ +G+R  +        +      +  +K+              
Sbjct: 182 LNKEEPLKHILIFQLLITTGIRKGELAALHWSDIYFEEQLMYVRKSYATIRNEEKNARRK 241

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                       +   + +    +++L +    +    +          Q          
Sbjct: 242 TVRIQKNTKNISSERILPIDAQTIEMLKIWKKEQARELLQFGINTNTKNQLIFTYVNADG 301

Query: 270 -----------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                      +   K    K      + HG R   AT+  + GA+  E     G K  +
Sbjct: 302 DINQPLHADYSNNILKRLEKKYKFKHVTIHGFRHTHATLLLEGGASIKETQDRLGHKNAE 361

Query: 318 QA-ETYTKGADRI-RLGIK 334
               TY+   ++  R  ++
Sbjct: 362 TTLNTYSHVTEKAQRNALE 380


>gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 343

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 83/331 (25%), Gaps = 31/331 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   G+    FR       R+     +          T +    +     ++    L  +
Sbjct: 5   KLPSGEWRADFRINGRDSKRVRKTFPTKGEAVVFEQFTLNEASEKPWLGEKEDRRRLSEV 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           I  +    H  SL+     S       +    GD    + T K      + R        
Sbjct: 65  IDLWY-HLHGQSLSA--ISSRMGKLKIVCDGLGDPIASRFTAKDFAHYRDKRLRGEISNG 121

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                      P +  + L  +  +F    R  E+   NP   V   K + + +   T  
Sbjct: 122 YHDSPERWAVKPITVNRELQYLTAVFSELKRLGEWTLPNPLDGVRIFKEEDKEMAWLTHP 181

Query: 178 DMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            + +            L +     L +G R S++       L     S    K     TV
Sbjct: 182 QINELLRACESYGNEDLTWIVKVCLSTGARWSEAENLTRSQLSPFKVSFFKTKGKKNRTV 241

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            +       LA+                     F       +      +  H +R   A+
Sbjct: 242 PISQWLHDELALRQRRMFKPC---------YQNFKKVLAMTSITLPDGQKTHVLRHTFAS 292

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G   + +   Y   A
Sbjct: 293 HFMMNGGNILVLQRILGHANIRETMKYAHFA 323


>gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R+       ++ +   +  +  + IR       +++  + I + +       + S
Sbjct: 7   LLDQMRERIRLKHYSIRTERVYCEWVKRFIRFHQYRHPQEMGAQEIEAFLTELAVARNVS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + +     V R K+        T E+++   +     S+P
Sbjct: 67  ASTQNQALSALLFLYKEVLSIDLPWLADVVRAKKPQRLPVVLTIEEVRSALA--QLESEP 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK------- 243
            L +  L  +G+R  ++ R  V+ +  +   I  +  K        LP   ++       
Sbjct: 125 WLVYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRRHLA 184

Query: 244 ---------------------LLAMTPIGKETFFINNDKQKMNA---------------- 266
                                 LA         +        +                 
Sbjct: 185 VVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRRHHLD 244

Query: 267 -TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +    FK     A +    + H +R   AT   ++G     +    G   V     YT
Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304

Query: 324 KGADR 328
              +R
Sbjct: 305 HVLNR 309


>gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 405

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 98/299 (32%), Gaps = 28/299 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 93  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 152

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R++  + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 153 KIDDILLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
           ++  + +    +  ++ ++ +      +  +    R  F F +Y+GL   D      +H+
Sbjct: 213 IKFHEVEVNK-QFLSQSEINRIWQKEFKIERLELVRDVFIFCVYTGLAFIDVYNLHPEHI 271

Query: 218 QNNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
             +             T  L +        ++L                      + + +
Sbjct: 272 SEDGNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKDNPYCMDKGTLLPVPCNQKMNSY 331

Query: 273 FKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 332 LKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 390


>gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
 gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4]
          Length = 326

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 47/303 (15%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------G 107
           P  L   +  Y ++      + N+   +    + +I+                       
Sbjct: 5   PMILMDFLD-YLETI--KGRSSNTVKEYAYDINLMIKYIIARKQNIKLKSFDDIVNIDSS 61

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-------FLTSMRVLFKWAVRQEYVAI-NPCL 159
           D D        +            +            +S+R  +K+ +    + I NP  
Sbjct: 62  DVDLNFFKNIDVIDLHSFMGFLDHNRSNGSSTRSRKTSSIRTFYKYLINIRKLDIINPAE 121

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++ PK+        T ++                 ++        L  G+R S+     
Sbjct: 122 LLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKARDYCITVLFLNCGMRLSELSSIN 181

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQ 268
           + H++ N       K     TV L D  +  +      +     +       + +M+   
Sbjct: 182 IDHIKTNTLR-VIGKGNKERTVYLNDMCLDAIDNYLKIRPEIDNDALFISKKRNRMSNRA 240

Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
                +      G +    S H +R  +AT+    G      L    G ++V   + YT 
Sbjct: 241 IQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTH 300

Query: 325 GAD 327
             +
Sbjct: 301 VDN 303


>gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106]
 gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106]
          Length = 345

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 91/274 (33%), Gaps = 36/274 (13%)

Query: 91  SRISFESYFDQIIRKSGDFDY--RKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLF 144
           + I+++    Q +           +I    I    R  ++ +   P++    L+ +R  +
Sbjct: 42  TLITYKRQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGFKPATIALKLSVVRRFY 101

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAF 196
           + A+ +  + +NP   V+ PK K +     T  +  + +  ++        + ++ +   
Sbjct: 102 QAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEASEVEQLFATIPDDGSLKSARDKALL 161

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKET 254
             L   G R  +  RA +  +     +   +  G      V L     +LL +    +E 
Sbjct: 162 AILTLEGPRTVELHRANICDIVRQGKNWGIRVEGKRNIRIVPLTPEIAQLLRVYLERREA 221

Query: 255 FFINNDK--------------QKMNATQFSIWFKAKATKAGVNKSA------HGVRKFSA 294
                                ++++     +       +A + ++       H +R  + 
Sbjct: 222 AEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQTPGRTLSTHSLRHTAG 281

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           T++  +GA   ++    G         Y    DR
Sbjct: 282 TLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315


>gi|270157694|ref|ZP_06186351.1| phage integrase family protein [Legionella longbeachae D-4968]
 gi|269989719|gb|EEZ95973.1| phage integrase family protein [Legionella longbeachae D-4968]
          Length = 408

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 34/353 (9%)

Query: 14  ERTRHGKIIYYFRK---GHGRRIRLPYPHE-------STFIPAYMSALTGSTPKREYINS 63
             +  G   +++R    G  + + +              F   +    +GS P+      
Sbjct: 30  RVSPKGTKTWFYRYKFEGKEKWLTIGNFPAMGVAEARKAFNDLWEIRQSGSDPEEIIQQR 89

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             K    LK LI ++  +               +     II   G F+  KI  + I   
Sbjct: 90  LLKNNNNLKTLICDWYNNYIVKHRKQPRQIK--QQIDADIIPLLGAFEIEKIQARDISKA 147

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKE 177
           +++   + +P  A + L++++  F +AV +  +A NP + +        +    R  T E
Sbjct: 148 LDNIVQRGSPVHANKVLSTLKQAFNYAVSRGEIATNPAMHIRARDIGGLEKPRDRNLTLE 207

Query: 178 DMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +++    F   G+       + A + +L +G R  +   A                    
Sbjct: 208 EIKTLWLFLDNGNHSMSIQIKNAIKIILLTGARTGELRLAKWSEFNFEKSLWVIPSENNK 267

Query: 233 ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284
           I + +      L       +    +        +D + +         +    + G+   
Sbjct: 268 IGLSMKIHLCDLAKKLLLEIKDISLSDYVLAGASDDEPLTDKAIPKAVQRIQERVGIPQW 327

Query: 285 SAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +AH +R+  AT   +  G     +    G K      TY K     + R  + 
Sbjct: 328 TAHDLRRTFATQLGETLGINPVVIEKCLGHKMPKIMATYNKDEMLPQRREALD 380


>gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 165

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 5/139 (3%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKE 253
           A+ F  + GLR SD      + +  +    +                  + L   P   +
Sbjct: 17  AYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 76

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
               ++       +  +   K  A  AG++K  + H  R   AT+    GA  + +    
Sbjct: 77  KTADDHVFDL--PSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYTVSKLL 134

Query: 312 GWKTVDQAETYTKGADRIR 330
           G  +V   + Y K  ++ +
Sbjct: 135 GHTSVKMTQVYAKIVNKKK 153


>gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
 gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873]
          Length = 272

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 81/267 (30%), Gaps = 15/267 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130
           + ++ +  +    +  +  ++++   + I         +I T ++R   +    +   +P
Sbjct: 5   LEKFIEYLYQKDKSKKTIYTYKNDIKRFIEYFEKNKL-EINTINMRKFKDYLLEALLLSP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + + ++R   ++            +  +     T       +      ++      
Sbjct: 64  KTVNRNIIAIRQFLEYIHINNIDIKMIKIQEQGFLEDTL---TNDEVIRMIKETEKMHDL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +     L Y+G+R S++     + +  +       K G    + +P     +     I
Sbjct: 121 RAKAFICTLYYTGMRVSEAISLLSEDINKDSIR-ILGKGGKYRDILIPKKLKNIWKDYMI 179

Query: 251 GKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
            +E         +   ++        K     A + K     H  R        D G   
Sbjct: 180 VRENNSDKLFTGREGGISRFTALNIVKKYGHMAKIKKDKVYNHAFRHLYCLNLVDRGIPL 239

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G K +     YT+ + +  L
Sbjct: 240 DAIKDLAGHKNISTTIIYTRKSKKQLL 266


>gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1342]
          Length = 382

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  IENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAIKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
 gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes
           ATCC 10782]
          Length = 359

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 93/350 (26%), Gaps = 27/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++     +    +R   G++         T   A ++A                   T+
Sbjct: 4   YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +        +   +  ++   F  I    G    + IT    +  +       +
Sbjct: 62  LDYNRRWADIYKKPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGEKVA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184
             +  +F   ++   K A+R   +  N          +  K ++E     ++       +
Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLTFIKVA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229
                    L    +  +GLR ++      + +  +                    T+  
Sbjct: 182 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFDNGYIDINKTFDYSISQNFGPTKNE 241

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +I  V +    ++LL                    +   +   K      G N + H +
Sbjct: 242 QSIRKVPIDKNSLELLRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
           R   A+     G     +    G + ++   + Y    + ++    +  +
Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 349


>gi|316932246|ref|YP_004107228.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315599960|gb|ADU42495.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 440

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 98/358 (27%), Gaps = 48/358 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---K 66
           +V + RTR     Y         I L                 G   + E     R   +
Sbjct: 41  YVIQYRTRGRSRRY--------TIGLHGVWTPETARREAKVQLGRVAQGENPAEERELDR 92

Query: 67  KPTTLKWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTK 117
           K  T+K L  +Y                   ++           II   G+   R +T  
Sbjct: 93  KALTMKQLCEQYLADMQAGLILGKGGRPKKASTVEVDIGRIRRHIIPLVGNRRVRDVTKA 152

Query: 118 HIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            + + +                       +  P +A + +  +  +F +AV+   +  NP
Sbjct: 153 DMNNLMRDIIAGKTRISVKTEKLRGRAIVRGGPGTATRAMGLLGGIFTYAVQLGIIEHNP 212

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRA 212
              +++PK K    R    E     +         R      +      +G R ++    
Sbjct: 213 THGLKKPKYKVRDRRLSEAEYRTLGEILARARKSDRYRIHAEILQLIAVTGCRKTEIVEL 272

Query: 213 GVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
               +      ++    K G  +          L         T+             F 
Sbjct: 273 KWSEVDFEGSCLRLSDSKEGASVRPIGLSAINFLEKRHAHRTGTYVFPGQSDDNAVGNFP 332

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +K   T++ + + + H +R   A+I+ D G T   + A  G         Y    D
Sbjct: 333 QSWKKLFTESPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHTLD 390


>gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073]
 gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520]
          Length = 343

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 359

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +       +      G     +++   + S    
Sbjct: 19  QTLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLVVLESYQRW 78

Query: 126 RKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             L+++R L +W +++ ++  NP   +E PK +         
Sbjct: 79  LQSYRRADGRHLVVNGQRHLLSALRGLLRWLLKRHHILYNPADLLELPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 ESETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKAT 278
           G    V +    +  L                              + T  ++  +A   
Sbjct: 199 GKDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRD 258

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27]
 gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27]
          Length = 391

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 110/373 (29%), Gaps = 55/373 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIR-----LPYPHES-------TFIPAYMSALTGSTPKREY 60
           + R + G  ++Y   G G+ +       P                    AL      +  
Sbjct: 2   RRRGKGGGSVFYHE-GKGKWVAQLTWIDPATGRKVKREKHCETRKEAERALADMVAAQAK 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111
                    T +    +Y K      L  NS           +            G    
Sbjct: 61  GLLTDPSRLTTRDFALDYLKRLEREGLRPNSIRLAREELAHALPSLKDPKAHDPLGRMRL 120

Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA NP  +V     K 
Sbjct: 121 QEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPKG 180

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           E      +          +E S+ +   L    +L +GLR  ++     + +      + 
Sbjct: 181 EKTARALEPHEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQWRDIDLEAGELT 240

Query: 226 TQKTG------------------------TIITVELPDGFMKLLAMTPIGKETFFI-NND 260
             ++                           + + L     +LL      +         
Sbjct: 241 VWRSWTKAGGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGG 300

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
            + ++   F+ + +  A KAG+ +   H +R   AT++   G     +    G  +    
Sbjct: 301 VKPVDPDAFNHYLRRLAEKAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPTIT 360

Query: 319 AETYTKGADRIRL 331
              Y    +  R 
Sbjct: 361 LNVYRHLLEEERR 373


>gi|331086468|ref|ZP_08335547.1| hypothetical protein HMPREF0987_01850 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410526|gb|EGG89954.1| hypothetical protein HMPREF0987_01850 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 361

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y    G  ++              +  A          +          +  +  Y 
Sbjct: 15  RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129
                  +  N+ ++ +     +I+        ++I    IR    +           ++
Sbjct: 67  NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNTMMNYRNKQGEGYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
                     +  +   AV    +  N         ++       WTKE+  +F    ++
Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
                 AFE L + G+R  +              +I+  K+                   
Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTVKSN 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + +P+   + L            N+   +++ +            +GV +   H +R 
Sbjct: 246 RIITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  + G +A  +    G ++V+    Y  
Sbjct: 306 SHVSLLINMGYSAVAIGERVGHESVEITYRYAH 338


>gi|311120291|gb|ADP69248.1| putative integrase [Leuconostoc phage phiMH1]
          Length = 356

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 89/338 (26%), Gaps = 25/338 (7%)

Query: 16  TRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R             G+ ++       T   A   A      K+    +          +
Sbjct: 6   KRGKTWTASVSVPDNGKYLKKTQSGFQTKKAATNWANETEVQKQNRELTKDNAI--FVEV 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
             ++        L   ++  + +    + +K G+    +IT+K  +  +      H  SS
Sbjct: 64  FEDWYHIFKEPQLQTATKQWYRTTLSLLTKKWGNKKMSEITSKDFQLLINEYGAEHVKSS 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                       ++A+ +  +  +   +V          +     +  + K      S+ 
Sbjct: 124 VSHIKNITSAFIRYAIDEGLIIRDFTRNVNTYSIVKSKDKSLKFLEEDEMKKLIIXASES 183

Query: 193 RLAFEFLLYS----GLRCSDSCR-------AGVQHLQNNIFSIKTQKTGTI-------IT 234
                 ++ +    GLR S+               +  N       +             
Sbjct: 184 DAVTSHMILTALYSGLRFSEVAGLTKDDFDFKNNTVSVNKSWQIHDQAFKETKTKTSNRE 243

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
           + +   FM        G+   F   +    +    +   K    K      + HG+R   
Sbjct: 244 ITISSEFMNKAKKWTFGERFAFQGENDTPPSDNAANKQLKRFLEKDNSTVITFHGLRHTH 303

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           A+       +   +    G   V+    TY    ++ R
Sbjct: 304 ASFLLSKDISIQYVSERLGHADVNITLSTYAHLLEKKR 341


>gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 313

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 32/293 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR 126
            + LI  +  S        NS+ +++           +        K+T + I +  E  
Sbjct: 19  FEDLIERFISSIDA---KANSKDTYKRQIKPFFEWVSERYSFNSLHKMTQQDIFAYKEFL 75

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +  +   +LT++R  F+W    +             K K       T E ++   
Sbjct: 76  VRDGKSAYTISGYLTAVRKFFEWLESNKIFPNIAKSVKGLKKPKGFRKDCLTVEQIRTAL 135

Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           S +     +G +    F  L+ +GLR  +  RA V  L+        Q  G     +   
Sbjct: 136 SSFDVETSDGLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAILQIQGKGRDSKDDF 195

Query: 240 ---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                               L+       +     + + +     S   K    +  ++ 
Sbjct: 196 VLLVDETLRPLRKYLASRGALSEKDPLFSSTSNRTNGEPLKERTISWIIKETLRRIDIDD 255

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
              +AH +R  + ++S   GA+  +  A            Y    +RI+ G +
Sbjct: 256 SRLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIYFHNHERIKSGAE 308


>gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri]
 gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri]
          Length = 336

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   HI + +E        P++   +L++
Sbjct: 53  SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 112

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                   ++G 
Sbjct: 113 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     ++  +  +       K        +P G  K L    
Sbjct: 173 RDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 232

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                        +   F +   ++M+        + +  +AG+ K + H +R+  A+  
Sbjct: 233 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEKFAPHDLRRTFASSM 292

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R++   +   
Sbjct: 293 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 333


>gi|260664378|ref|ZP_05865231.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260562264|gb|EEX28233.1| Lj928 prophage integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 372

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 108/357 (30%), Gaps = 37/357 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSP--R 65
             + K  T+ G + Y F+   G            +    Y  A       R    +   +
Sbjct: 6   KRIEKYETKKG-VRYRFKTYLGTDETGKAIKITRSGFLNYKEAKESFDLLRAKGLNEYVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            K   L  L   +  +     +  ++   + + Y + + +  G+    KI    ++  V 
Sbjct: 65  AKQIKLDDLFQIWFDTYKLQ-VKESTAEKTRQVYINHLHKYYGNTYVDKIQQASLQKFVS 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
           +      +     + +  +FK A+   Y++ NP  +V  PK+     R  T+    + + 
Sbjct: 124 TLPKELVNFRDVTSLLNRIFKLAISLNYISNNPLKNVIIPKKTARKRRDTTQNFYDKNEL 183

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------- 227
                +  S   +  + F  L  +G+R  ++     + +  +   I              
Sbjct: 184 KSFLNAAQSTNYKYYVYFLLLASTGIRKGEALALTWKDINFSSNYININKTLAYGLHGKY 243

Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA--------KA 277
             +       +      K L    +  +     N           +              
Sbjct: 244 VVQPPKTAHSKRKVPLSKNLKSELLNYQKQDTKNKYLFHTENGDYLRLTKPQQWLKIIYR 303

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAH--ELMATYGWKTVDQA-ETYTKGADRIR 330
               + K + HG R   A+I  ++  +    ++ A  G +TV      YT    + +
Sbjct: 304 KNPELKKITIHGFRHTFASILIESNPSIKPTDVQAILGHETVQMTLNIYTHATQKGK 360


>gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
 gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM
           17565]
          Length = 413

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 21/272 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++Y        L+  +   +E  F   +R     +  +I+       +     + +S 
Sbjct: 112 IMTKYLHLLEEQRLSPKTIDGYEHVFSYFLRHLSLRNVSRISDIGEDDVLTFISSSQNSK 171

Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFK----SFWS 187
            + L +MR   ++   Q+ +  N    +   R   K +    +T E++ Q +        
Sbjct: 172 QRVLATMRAFCRYLYEQKLINKNIDYVIGRNRYIVKEKLPSTYTCEEVLQIESSVNQSTP 231

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLL 245
            G +           GLR SD       +L  +   I+  +  T   +ELP      + +
Sbjct: 232 VGKRDYAMLLLATRLGLRSSDIAGLQFSNLDWDRNIIRLIQYKTKREIELPLLKDVGEAI 291

Query: 246 AMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKF 292
                       +             +N    S+  +     + ++     K  H +R  
Sbjct: 292 INYVKYGRPSSSSKQIFLSSLAPYNPVNGAVVSLSVRKIICHSRIDTRDRKKGPHAMRHT 351

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     G +   +  T G KT      Y +
Sbjct: 352 LASQLLRNGISLPVISETLGHKTTQTTMGYLR 383


>gi|298244935|ref|ZP_06968741.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552416|gb|EFH86281.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 389

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 110/363 (30%), Gaps = 48/363 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+ +     G G+R    Y  +     A    L              ++  T K  ++ +
Sbjct: 28  GRWVARVPLGKGKRKEEYYKTKQEAERAKRRMLNERDA----GKLVTEQEQTFKDYLAYW 83

Query: 79  RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAI 134
             +    ++   + I +  Y + +II        RK+T +  +      E  K +P++  
Sbjct: 84  LNAHR-TTVRKTTYIMYSKYLETRIIPVLVHVGLRKLTLEMFQSLYQKWEQEKLSPNTIR 142

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +      AV+ + +A NP  +V+ PK +   I   + E++++      E      
Sbjct: 143 LIHGIISEALNDAVKWKKLAYNPAQNVKLPKPRKTKIYVLSDEEIERLLQCAQE-MHLHA 201

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----------------------QNNIFSIKTQKTGTI 232
            F   L  G+R  +        +                        +      +     
Sbjct: 202 LFRMALLLGMRAGELLALRWSDINFKKRALTIQRTVSYVNDPAIGHYDFHVGPPKTEAGE 261

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-------------NATQFSIWFKAKATK 279
            T+ LP   + +L      +    +++   K                    ++F      
Sbjct: 262 RTIHLPLDIVDVLLEHREKQTQMRVSSPHWKDQDLVFCTRFGNYLTPASVRVFFDRLLKA 321

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNS 336
           AG+     H +R  ++ I           M   G  ++D  + TY     D  +   +  
Sbjct: 322 AGLEHMKFHALRHNASRILRQLKIDPVVRMEMLGHTSLDMTDGTYGHATRDMHKEAAEEI 381

Query: 337 RRI 339
            R+
Sbjct: 382 NRL 384


>gi|148553081|ref|YP_001260663.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498271|gb|ABQ66525.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 451

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 91/361 (25%), Gaps = 45/361 (12%)

Query: 18  HGKIIYYFRKGHGRRIR-----LPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPT 69
            GK  Y  +   G R R     L               L G   + +     R    +  
Sbjct: 36  SGKRSYVIQYRSGGRSRRYTIGLHGVWTPETARQEAKILFGRIAQGDDPAEERQLNHRAI 95

Query: 70  TLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120
           T+K L + Y                    +           I+   G    + +T   + 
Sbjct: 96  TIKELCALYVADLEAGLILGKGGRPKKPGTIVTDMGRIRRHIVPLIGRRKVKDLTKADVN 155

Query: 121 SGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             ++                      +    +A + +  +  +  +A+    +  NP   
Sbjct: 156 RVLKDIMAGKTAVVAKTKKLRGKAIVRGGVGTATRTIGLLGGILTYAIEAGIIDTNPAHG 215

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCR--AG 213
           + +PK      R    E     +       + R A    +      +G R  +       
Sbjct: 216 IRKPKDNVRDRRLTESEYRLLGQIIRDAKEEGRYAVVAEITRVIALTGCRRGEIINLART 275

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              +  +   +   K G  +          L A       T+      +      F   +
Sbjct: 276 EADIGASCLRLDDTKEGKSVRPVGLPAVEALEARLDATTGTYLFPGQGEDNAFGCFPTHW 335

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           K       + + + H +R   A+I+ D G T   + A  G         Y    D   + 
Sbjct: 336 KKLIENTPLEDVTPHVLRHSFASIANDLGFTEVTIAALLGHAKGSVTGKYIHTLDTALIM 395

Query: 333 I 333
            
Sbjct: 396 A 396


>gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
 gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71]
          Length = 330

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 72/261 (27%), Gaps = 12/261 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA 133
           I ++       S +V+++    +    + RK    D   +  K  R+       ++ S  
Sbjct: 60  IEQFLNHLTVRSCSVSTQRVALNALVYLYRKFLAVDVGDLEFKPARANRRLPVVYSRSEV 119

Query: 134 IQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
              L+ ++ + +  V   Y   +     LS+       +      +              
Sbjct: 120 AAILSKLKGVHRLMVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGNKDRSTMLPQ 179

Query: 191 QPRLAFEFLLYSG-LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +   A +  + +  L  +     G   +       +        T          +   P
Sbjct: 180 RLVPALKRQICTVELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLFPASRIGRDP 239

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                   +        T  +   +     AG++K   +H  R   AT   + G     +
Sbjct: 240 RSGVLRRHHLH-----PTALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYDLRTI 294

Query: 308 MATYGWKTVDQAETYTKGADR 328
               G   +   E YT   +R
Sbjct: 295 QELLGHSDITTTEIYTHVVNR 315


>gi|323965036|gb|EGB60497.1| phage integrase [Escherichia coli M863]
          Length = 387

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 107/378 (28%), Gaps = 56/378 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      +     +RI+           A                       T +    
Sbjct: 6   RNEIWYASYSLPGEKRIKESL-GTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACL 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
            + +          S  S +S  +  +        + I+   I S V    +  +     
Sbjct: 65  RWLEEKADKK----SLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWK 120

Query: 132 ------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                   +  + L  ++ + + A  +++  +     ++ P  +
Sbjct: 121 QKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILR-AAERDWKWLEKAPVIKIPAVR 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + +R   KE+ ++      E    +   +F L +GLR S+      Q +          
Sbjct: 180 NKRVRWLEKEEAKRLIDECPE--PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVTWVN 237

Query: 228 KT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
                    I V L D   K+L         +   + K    A   S             
Sbjct: 238 PEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKT 297

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            + +   +AG+ +   H +R   A+    +G     L    GW++++    Y   A    
Sbjct: 298 SWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNH- 356

Query: 331 LGIKNSRRISSVVDSDDP 348
              +++R+I  +   + P
Sbjct: 357 -LTEHARKIDDIFGDNVP 373


>gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 400

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/390 (13%), Positives = 105/390 (26%), Gaps = 71/390 (18%)

Query: 17  RHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++G+  + +   +GR        +I                 + G     E++     + 
Sbjct: 2   KNGQERWEYFVSNGRSNGTGRQQKIHKRGFRSHKEALKAAKIIEGQIASEEFVK-ENPQK 60

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR- 126
            T+   ++ +       ++   SRI +       I    G++   K      +  + S  
Sbjct: 61  MTISKFMNIWINEYK-NNVKEGSRIVYRDAIRMYIDPYIGNYQLNKYKPADHQKFINSLF 119

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---------KRK 167
                       + ++      ++   FK A +  YV  NP   VE P         K K
Sbjct: 120 TNKELGKNKNGLSYNTVKIVNAALSNAFKKAQKLGYVKSNPTYLVEFPLDKVKEKTNKEK 179

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                   +E++    +   +     + F  +   GLR  +       +       +   
Sbjct: 180 KLEFYTLEQENLFLDTARNFDEYIWYVFFLIIFDLGLRKGEVMALRWFNFDFKDDILTFD 239

Query: 228 KTGTIITVELPDGFMK----------------------------------LLAMTPIGKE 253
           K       +     +                                   +L MT   ++
Sbjct: 240 KQRLYRKEQPGQVILDDVKTDAGKRSLKMTNRVRNSVLELYSINYDLTSNVLPMTNSNQD 299

Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
             FIN+  +     +        +     KA + K   H  R  +A     AG    ++ 
Sbjct: 300 FLFINHRGKNVGLPIRQRSVDTAWHRIIQKANLPKIRIHDGRHTNAARLRQAGVPLEDIK 359

Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              G K V   E Y    A+     +    
Sbjct: 360 DMLGHKNVKTTEIYAHVSAEVKERAVNKLE 389


>gi|220903716|ref|YP_002479028.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868015|gb|ACL48350.1| hypothetical protein Ddes_0438 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 337

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 103/343 (30%), Gaps = 26/343 (7%)

Query: 17  RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G + +    R+     +     +  +    +   +     +  + +    + TTL   
Sbjct: 6   KRGDLQWEARIRRKGWP-VTCKTFNTKSDAEKWARDIENEMDRGVFTSRTEAENTTLNEA 64

Query: 75  ISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
           +  +       + +  + +  +      +I  K        I +K I   ++ R      
Sbjct: 65  LERFIAEYVPRYNNPKLETIKARALQRRKIATKF----MAAIRSKDIADFMQERAAEGVA 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++    L  +  +F  A+    +          PK K    R    E  ++ +   +  
Sbjct: 121 GNTIRLDLALISRVFNVAISSWGMESLRNPVSRIPKPKVSSGRTRRLEGDEEERLLAACS 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              R    F + + +R  +      Q++    +   +   K     TV L    +++L  
Sbjct: 181 DSLRPIVRFAIETAMRRGEMASLTWQNIDLEKSTAYLPKTKNNEERTVPLSPAAVQILKN 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG-ATAH 305
              G+           ++    +  F     K G+   + H +R  + +   +       
Sbjct: 241 LEKGESARVFQ-----LSDVSITQAFIKTCQKVGIEGLTFHDLRHEATSRLFERTDLDIM 295

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           E+ +  G KT+     Y+              R++     + P
Sbjct: 296 EIKSITGHKTLQMLARYSHLRTYK-----LVDRLAGARRGETP 333


>gi|323139403|ref|ZP_08074453.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395335|gb|EFX97886.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 394

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 119/358 (33%), Gaps = 33/358 (9%)

Query: 14  ERTRHGK----IIYYFRKGHG--RRIRLPYPHESTFIPAYMSA------LTGSTPKREYI 61
           + T  G+    + Y  + G G  R+  +    + T   A   A        G    +   
Sbjct: 34  KVTPKGRKVFLVQYRPKVGGGNARKYTIGQYGKLTPQQARAEAMRVLAEREGGRDPQAER 93

Query: 62  NSPRKKPTT--LKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKH 118
            + + +  +  ++ L+ ++       + + + +         +++   G     ++    
Sbjct: 94  QAKKLEVMSQRVEDLVDDFINRHVSQNRSASETIRILRR---EVLPDFGTRAVSELCRAD 150

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   + + +    P  A +   ++R    W V +  +  +PC  +  P ++    R  + 
Sbjct: 151 VDRLIHNIQARGAPIMANRAFAAIRKFLAWCVGRGILENSPCEGMRAPSKERSRERVLSD 210

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGT 231
           E+++           P  +   +L  +G R ++        L  +           K G 
Sbjct: 211 EELKSILVAARTMGHPFGSIVQVLGLTGQRRNEVGLMTWAQLDLSNGQWVIPAERAKNGK 270

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              V L +    L++ +P   +  F N+ K+      +S         +G+N  + H +R
Sbjct: 271 SHVVHLSEEAKALISSSPRLGDLVFSNDGKRPF--QGYSKCKSRLDQVSGINNWTLHDLR 328

Query: 291 KFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKNSRRISSVV 343
           +   +  A  G   H        ++      A  Y +    D  R  ++   R  + +
Sbjct: 329 RTVVSGMARLGIPPHVADKILNHQSGSIGGVAAIYQRHEFLDERRDALEIWGRHVAAL 386


>gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 90/301 (29%), Gaps = 27/301 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           L   +  Y           +S  S++   +  +R  G     Y +I  + +    +    
Sbjct: 6   LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ + ++   ++  +R ++  A+       +  L            +     +  +    
Sbjct: 65  RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPTESLRLLMT 124

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                       R      L+ G+   D        ++N +     QKTGT + VE+   
Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284
             +LLA    G                               F+   K  A   GV    
Sbjct: 185 AKELLAALMTGTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           +++ +R   AT   + G     +    G +++   + Y K     ++   N     S+ +
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYN 304

Query: 345 S 345
           +
Sbjct: 305 N 305


>gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 336

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 108/346 (31%), Gaps = 21/346 (6%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
              +   P+V + +      +Y++R G              F   Y   ++G   +    
Sbjct: 1   MRKIGRKPYVRETKP---GFVYFYRGGKYLHRFTAPEGTEEFDRQYWEVMSGKKQE---- 53

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   +    I   R+S  W + ++  R   E   + +  K G  D  ++T   I  
Sbjct: 54  -----AKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQADIYE 108

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQ 180
            ++  KH    A     ++ ++ K  +R+ ++  NP   +ER K   E         D  
Sbjct: 109 AMDRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWPDAA 168

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             K     G   RL FE  + +  R SD           +   ++  KTG  + +     
Sbjct: 169 VVKFRAEAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVLPCTVA 228

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT-------KAGVN-KSAHGVRKF 292
               L           + +           + ++  A        + G+     H +R  
Sbjct: 229 LKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLHALRYR 288

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
                A AG    E+MA  G  T      Y   A +I    +   +
Sbjct: 289 GVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQIMRARQARGK 334


>gi|325696212|gb|EGD38103.1| phage integrase family prophage Sa05 [Streptococcus sanguinis
           SK160]
          Length = 386

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 108/373 (28%), Gaps = 52/373 (13%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYI 61
           + + + + G  +Y         +  G++++        +     A  +            
Sbjct: 8   IVEVKKKDGSKVYRASVYLGVDQVTGKKVKTSITGRTRKEVKSKAQHAQFDFKLNGSTVH 67

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIR 120
            + R K    + L   + +S     +   +   +    +  +I   G     K+   +I+
Sbjct: 68  KAVRVKNY--QELADLWLESYQLT-VKPQTFIATKRMVYSHLIPVFGKMKLDKLAASYIQ 124

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176
             V              +    + K+ V  + +  NP   +  P++     +        
Sbjct: 125 GFVNDLSSHLVHFGVVHSINSRILKYGVSLQLIPFNPARDIILPRKPKRENKSIKFISPE 184

Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                 + M++            + +  LL +G R  ++       +     +I   K  
Sbjct: 185 DLKTLLDYMEKLAFKKYSYFFDYMLYSVLLATGCRFGEAVALEWSDIDLENATISISKNY 244

Query: 231 TI--------------ITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKM 264
                             + +    + +L +    +   FI               K+  
Sbjct: 245 NRLVDLVGPPKSKAGVRVISIDRKTVNMLKLYKNRQRQLFIEDGARAPSVVFATPTKKYQ 304

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           N          +  +AG+ + + H  R   A++  +AG +  EL    G  T+      Y
Sbjct: 305 NMATRQDSLDRRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIY 364

Query: 323 TKGA-DRIRLGIK 334
           +  + D+ +  + 
Sbjct: 365 SHLSKDKEKEAVS 377


>gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 76/257 (29%), Gaps = 15/257 (5%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             + +       + ++   +     + I         ++T + + +  E     +  +S 
Sbjct: 11  DLFCEHLEQDEKSRHTIEKYRRDLRKFIDFING---GEVTKERVINFKEYLVENYALNSV 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L S+     +A  QE+         ++ +      R  ++++  +         + R
Sbjct: 68  NSILASINHFMVFAGWQEFRVK---QLKKQRQVYCPEERELSRQEYFELIRTAKREGKER 124

Query: 194 LAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTP 249
           +         +G+R S+     VQ +++    +  +     + +        M  +    
Sbjct: 125 ICLIIQTIGSTGIRISELPSITVQAVKDGGVQVDCKGKSRQVLMPKKLTMKLMHYIKKEK 184

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           I     F       ++ +      K    KAG+ +     H +R   A           +
Sbjct: 185 IRSGPVFRTKQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSFYQMEKDIAK 244

Query: 307 LMATYGWKTVDQAETYT 323
           L    G   ++    Y 
Sbjct: 245 LADLLGHSNINTTRIYI 261


>gi|319891787|ref|YP_004148662.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161483|gb|ADV05026.1| Integrase [Staphylococcus pseudintermedius HKU10-03]
          Length = 368

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 97/357 (27%), Gaps = 38/357 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-RE 59
           MT  LRL   + K+  R     YYFR  +  +                 A+        E
Sbjct: 1   MTHDLRLAHNIYKDSKRG---TYYFRITYYDKTNKRQYITRKGFKQRKEAVKKCNEIMDE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +        L+ EY +       + + +       + ++      D  K+TT+ +
Sbjct: 58  LEGIGQLNRLPFDKLVEEYIEWYSARRKSSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117

Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 +    H+     +    +  L   A++   +  N    V   + +++    +  
Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFYDLKQNVASLVGNFEIESQKRLNYWT 177

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            +            Q +L F+ L YSG R  +      + +  +   I   KT       
Sbjct: 178 LEQFNEFYDALATQQQKLFFKLLFYSGARKGEIRALTWRDVNFDDEFIHINKTDYHGEVT 237

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAK 276
                       +   + +     L                    +  + +    WF   
Sbjct: 238 APKTKSAIRDIYLPAHMMNDIKNYLNWYKENNIYKDDYVLFGTFFKAYSESTIDRWFTTA 297

Query: 277 ATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                              H +R   A++  + GA+   +    G    +  E Y +
Sbjct: 298 LKVLDNQLPDGQTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSN--EVYNR 352


>gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 325

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 23/311 (7%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           AL+     ++          T ++L  ++       +L+ NS   ++   ++        
Sbjct: 18  ALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERFDSVI-KK 76

Query: 110 DYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++  +TT+ +R  + +     SS            ++  F++ V +  +  NP   ++  
Sbjct: 77  NFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTRIKPI 136

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +  T    P++  ++++ ++        +   E L+ +  R  +     +  +     SI
Sbjct: 137 RGNTSEKLPFSNMEIEKLRNAC-SSCLEKAVIEILISTAFRRQELAEIKLSDIDFEKGSI 195

Query: 225 KTQKTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +T   G                I     +   K + +   GK   F     +  +A+   
Sbjct: 196 RTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDASSLY 255

Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              K    KAGV +   H  R+ +AT + D G    ++      + +     YT   ++ 
Sbjct: 256 ALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-TLNKD 314

Query: 330 RLGIKNSRRIS 340
           RL  K++R + 
Sbjct: 315 RLKDKHNRFLD 325


>gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 407

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 96/295 (32%), Gaps = 23/295 (7%)

Query: 69  TTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS----GDFDY--RKITTKHI 119
           TT   +  +Y  S       +L   +   ++                 D    ++T+  +
Sbjct: 107 TTFLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQDFLQAKYHRKDIGQTELTSAVV 166

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +              ++  + L +++ +  +A  +  +  +P  + +  + +       T
Sbjct: 167 QDFELYLTSVVGGVHNTTTKKLRNLKTVVNYARNRGLIMHDPFANHK-LRYELVDRGYLT 225

Query: 176 KEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230
           +E++ +      +  +  L    F F  ++GL   D        +    +   + T++  
Sbjct: 226 EEEVLRIMKKHFDIERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITKRYK 285

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
           T +   +    + L  +                M+  + + + K  A   G+ K  + H 
Sbjct: 286 TSVDENVMLLDIPLAIIRKYYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLTFHM 345

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            R   AT+S   G     +    G   +   + Y +  ++   R   + + ++S 
Sbjct: 346 ARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEELAGKLSK 400


>gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147]
          Length = 382

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 89/375 (23%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R       Y F+    +              A                    +P TLK 
Sbjct: 5   RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDAQPITLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFD---------YRKITTKH---I 119
            + +Y ++    S   N               R  G              ++TT+    +
Sbjct: 63  ALEQYVEARSETSYHRNMCSIVRKTLGYKLHPRTKGKLPCYGMSPDTLLHELTTRDFDLL 122

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------- 171
            +  ++    P++    +  +R       +  +      +  E                 
Sbjct: 123 VAKRKAEGDKPATIKHEIGLLRATINEMAKLGFKVSREIVFPELRTSYRLRYLDSNDESA 182

Query: 172 ----------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                     R                         FLL +G R S+        +  + 
Sbjct: 183 LLRELDPERLRTRINVSKPLTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINIDA 242

Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277
            +    +++     +          L       +       + +  N   +S    K   
Sbjct: 243 CTISLYRSKVRNEDVLHMTSRLEAILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302

Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AG+N            + H +R   A+    AG + +E+    G       + Y   +
Sbjct: 303 ERAGLNDPVLVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362

Query: 327 --DRIRLGIKNSRRI 339
             D  R  +K    +
Sbjct: 363 PNDASRKAVKVIDSL 377


>gi|4520380|dbj|BAA75916.1| similar to integrase [Pseudomonas putida]
          Length = 399

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 44/361 (12%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALT 52
           M P  R      LPP + ++   R+G   Y +R     R+  L          A  + + 
Sbjct: 32  MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 91

Query: 53  GSTPKREYINS----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                          P          I EY        L+ +S  +     +++ +  G+
Sbjct: 92  LQVAPPTLSARIAPEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGE 151

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              R +TT  I   + +  ++     A    + +R LF  A+ + +V  NP  + +  + 
Sbjct: 152 RGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARV 211

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           K +  R   +     ++         + A E  L +G R  D      +   +    +  
Sbjct: 212 KIKRQRLTLELWKAIYEEAAQ--PWLKRAMELALITGQRREDIASFVFRDEVDGFLQVVQ 269

Query: 227 QKTGTI--------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            KTG                                 L+            +       +
Sbjct: 270 SKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTIS 329

Query: 267 TQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +F+      A K G++      + H  R  +A +  + G    +     G ++    + 
Sbjct: 330 KEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDL 386

Query: 322 Y 322
           Y
Sbjct: 387 Y 387


>gi|302559765|ref|ZP_07312107.1| integrase [Streptomyces griseoflavus Tu4000]
 gi|302477383|gb|EFL40476.1| integrase [Streptomyces griseoflavus Tu4000]
          Length = 392

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 105/378 (27%), Gaps = 38/378 (10%)

Query: 1   MTPSLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M    +      + R    G+    +    G          ++              +  
Sbjct: 1   MAGKRKSRRGFGRVRKLPSGRFQVRYPGPDGVLRPGDRTFATSTDADRWLMRKRIEIEEG 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
               P +  TT++   + +  +     L   ++ S+ S  +  I+   GD +   +    
Sbjct: 61  RWLDPAEGQTTVRDWSARWLAAVSPQ-LKHKTQASYRSLINSLIVPALGDRELSGLRPIT 119

Query: 119 IRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +   V   K    SA +       +  + + AV  + +   PC  V+ P+         T
Sbjct: 120 VAEWVGGMKSRGLSASRIRQAYRVLSQIMRSAVDNDMIPQTPCRGVKLPRMPQTEPHILT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
              ++  +   S      L    L Y+GLR  ++       +  +   +   +       
Sbjct: 180 --PLEASRIVRSAAKPHDLLIALLAYAGLRVGEAFALRRVDIDVSGGFVLVDENLAEANG 237

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIWFKA---- 275
             +         +LL + P   +    + +                       ++     
Sbjct: 238 TLVFDTPKSHQKRLLRVGPSLAKRLGRHLETLPGGDDALLFLTPGGKPLRYNQWRKAYFD 297

Query: 276 -KATKAGV-NKSAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTK-GADRIR 330
              + AG+ + + H +R    T  AD  G          G          Y +  A R  
Sbjct: 298 PAVSAAGLTDVTPHDLRASHGTWVADRYGV--MTAAHRLGHSNASVTTRHYARPVAGRDD 355

Query: 331 LGIKNSRRISSVVDSDDP 348
              + +    S +   DP
Sbjct: 356 QVAEAAD---SWLSGHDP 370


>gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M]
 gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M]
          Length = 291

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 83/281 (29%), Gaps = 24/281 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
                   LA  ++  +     Q     G       T + +R           +P S   
Sbjct: 16  IDDMRMRKLAPQTQAGYVRVVRQFAAFLG-RPPDTATVEDLRRYQLHLVDHGISPVSLNA 74

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +T ++  F+  + Q  +       ++  +         + +++ +     +   + + A
Sbjct: 75  AITGLKFFFEITLNQPGLM----ARMQPVRVPRTLPVVLSPDEVAR-LIAAAGNLKHQTA 129

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DGFMKLLA 246
                 +GLR S+     V  + +   +++ ++                     + ++  
Sbjct: 130 LSVAYGAGLRASEVVALKVGDVDSQRMTLRIEQGKGRRDRYAMLSPVLLERLRVWWRVAH 189

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSATISADAG 301
                 E  ++      ++        +A          G   S H +R   AT   +  
Sbjct: 190 AQGRMLEGGWLFPGLDPVDPLSTRQLNRAIHAAAEEAHLGKRVSMHTLRHSFATHLLEQK 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
                +    G K ++    YT+ A D +R  I    R+ S
Sbjct: 250 EDIRVIQVLLGHKKLETTSLYTQVATDLLRKVISPLDRLPS 290


>gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 337

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 79/317 (24%), Gaps = 39/317 (12%)

Query: 62  NSPRKKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRK----SGDFD----Y 111
               K   +   L+  +         +L+  +  ++   F   +       G        
Sbjct: 2   RRQPKPAPSFPALVQAFFVEHLTQQRALSPQTVAAYRDAFVLFLGFAEVRLGRSPALITL 61

Query: 112 RKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             IT   I + ++     R ++  S    L ++R   K+A  ++  ++           K
Sbjct: 62  ADITPDLITAFLDHLERKRHNSVRSRNGRLAALRSFLKFAAHRDVTSLQVIEHALGVPAK 121

Query: 168 TEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                       ++  +            +  +    L  +G R S+     V  +  + 
Sbjct: 122 RFERPMLGYLSREEMLAVIGTPDGTWFSQRDHVLVLLLYNTGARVSEIVGVKVGEVVLDD 181

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------MNATQFSIW 272
            +      G          +   +       +     +             M+       
Sbjct: 182 GAACVHLHGKGRKQRSVPLWRSTIRAIRAWIKRNPQFDSDSPLLHNRDGQAMSRWNVMQR 241

Query: 273 FKAKA--------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                          A  + S H +R  +A     AG     +    G ++      Y  
Sbjct: 242 LDRAVQVATESCPELATRHISPHVIRHTTAMHLLQAGVDISVIALWLGHESPATTHQYV- 300

Query: 325 GADRIRLGIKNSRRISS 341
            AD   +  +   R+  
Sbjct: 301 EADLA-MKERALARLQE 316


>gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
 gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136]
 gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136]
          Length = 337

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E   + P           +
Sbjct: 65  FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 125 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 185 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 242

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                                 K     AG+ K  + H  R    ++  + G     + A
Sbjct: 243 LGERHEGLIFDGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 302

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 303 YLGHKNITTTQIYSKMAAQQ 322


>gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453]
 gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453]
          Length = 305

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 29/293 (9%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------- 108
           RE      +   T++  I     +     L   +   + S     I              
Sbjct: 2   RETPGISEQGDQTIQDFIHA-LTTHE--DLNPKTLKEYASDLKHFIGWFETAYHQEEEII 58

Query: 109 FDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           F    + T  +    E+     +  P++  + L +++  F+WAV +  +  +P   V+  
Sbjct: 59  FRIEDVATPTLTRYREAAQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKLV 118

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             +    R  T ++     +    G   + +     + ++GLR  + C      +Q    
Sbjct: 119 PEEKVSPRQMTDKEEAALVAAAEHGGSLRDQTILIVMFHTGLRSMEVCDLAPGDIQIGKR 178

Query: 223 ----SIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWF 273
               ++++ K      V L       L        P     F       ++         
Sbjct: 179 SGQLTVRSGKRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALRHLI 238

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +     A +   SAH +R     + A+     H L    G  ++D    Y K 
Sbjct: 239 QKYMKAARLEGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKA 290


>gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 407

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 95/298 (31%), Gaps = 23/298 (7%)

Query: 66  KKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116
           K+ TT   +  +Y  S       +L   +   ++                 D    ++T+
Sbjct: 104 KEFTTFLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQSFLQAKYHRRDIGLSELTS 163

Query: 117 KHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             ++              ++  + L +++ +  +A  +  +  +P  + +    +     
Sbjct: 164 AVVQDFELYLTSVVGGVHNTTTKKLRNLKTVVNYARNRGLIMHDPFANHK-LHYELVDRG 222

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
             T+E++ +      +  +  L    F F  ++GL   D        +    +   + T+
Sbjct: 223 YLTEEEVLRIMKKHFDIERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITK 282

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +  T +   +    + L  +                M+  + + + K  A   G+ K  +
Sbjct: 283 RYKTSVDENVMLLDIPLAIIRKYYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLT 342

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            H  R   AT+S   G     +    G   +   + Y +  ++       + + ++  
Sbjct: 343 FHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVEHDMEQLADKLGK 400


>gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195]
 gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195]
 gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678]
          Length = 319

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 65/297 (21%), Gaps = 50/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           +       ++ +  S+  +    I          + T+ +   +    +  + AI     
Sbjct: 13  EEMRMRGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQFLTFLANQRNVAINTQKI 72

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                 +  ++        L      ++       +  ++           + RL  E L
Sbjct: 73  ALNALAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSEIS--LILNELDGRDRLIIERL 130

Query: 200 LYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM--------------- 242
             SGLR S+  R  +Q +       +++  K        L                    
Sbjct: 131 YGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCAIKLTAYINKAMEIQH 190

Query: 243 ------------KLLAMTPIGKETFFINNDKQKMN-----------------ATQFSIWF 273
                         L                                      +      
Sbjct: 191 RDNQQGIGPSLPNALERKYPHAFKQHGWMFIFPSTTTCINPYTGTLCRHHLHQSVIRKAL 250

Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   + K  + H  R   AT    +G+    +    G   V   + YT    +
Sbjct: 251 GNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQ 307


>gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 329

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 76/276 (27%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  K    + R++ T  +
Sbjct: 40  DTEEETNAGLTNEQFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDL 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R       + +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DESLEKMRDNCEEA-RDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAH 287
           V         L      +            +              +    K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLRERTDDNPALFVSLRSPHERLKIGGVECRLRELGNKLNIEKIHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|288904635|ref|YP_003429856.1| phage integrase [Streptococcus gallolyticus UCN34]
 gi|288731360|emb|CBI12911.1| putative phage integrase [Streptococcus gallolyticus UCN34]
          Length = 386

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 108/374 (28%), Gaps = 55/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T+ GK  YY R+     G++  +      T   A  +           
Sbjct: 5   KTKYP-NIYTYETKKGK-RYYVRRKFKLVGKQTEVSASGLKTVAEARQALAEIENKIANG 62

Query: 61  INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              PR K  T+      Y       G  A ++ ++  S+++    ++ GD   + I    
Sbjct: 63  DYDPR-KNMTVDDYWQIYSENRIKTGRWAPDTVMTKTSWYNHHFSKQFGDTLLKDIKRTK 121

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGI 171
             + + S  ++ S A   +  +  LF+  V    V      +        +      +  
Sbjct: 122 YEAYISSLLNSYSKA--TVVQINALFEAMVTDAVVNGYMDKNPILKIYIGKSNIPTKKKR 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +       +     +          + GLR S+        L+      +     +
Sbjct: 180 LSLEEFRAWDECARKILSNYDYTMARLTYF-GLRRSEVLGIKFSSLKLVNGRFRIFLDES 238

Query: 232 I----------------ITVELPDGFMKLLAMTPIGKETFFINNDK-------------- 261
                              V L +   +LL    +        +++              
Sbjct: 239 RTERRPEGGRMKTRTSKRYVLLDEETTELLQKAMMFARQIAKESNRILGQNDFIFVDEGA 298

Query: 262 -------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                  Q +     +  FK  + ++ ++ + H +R F AT    AG +   + A  G  
Sbjct: 299 NLKKRRGQPIKYAHIATIFKKVSAESKIHATPHMMRHFFATQGQIAGVSIEHMAAALGHS 358

Query: 315 TVDQAETYTKGADR 328
           T    + YT   D 
Sbjct: 359 TSYMTQQYTHIKDE 372


>gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948]
 gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948]
          Length = 405

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/401 (10%), Positives = 107/401 (26%), Gaps = 73/401 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
           + +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKKDNI 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 NYEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N+                ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
                +    G        E YT   D+  +      ++  
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 401


>gi|228941666|ref|ZP_04104213.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974593|ref|ZP_04135159.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981188|ref|ZP_04141488.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228778388|gb|EEM26655.1| Integrase/recombinase [Bacillus thuringiensis Bt407]
 gi|228784996|gb|EEM33009.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817878|gb|EEM63956.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326942274|gb|AEA18170.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 332

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 78/316 (24%), Gaps = 23/316 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           + R            +   L     K+E   +      T+   +    +      L   +
Sbjct: 3   KKRDSLTISEDLSNVFGDRLKSDQRKKETAENRYTFNLTIDKALEIIVRQMKATGLRERT 62

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +  +     + +      ++   HI   + S   +  + +  L  ++          
Sbjct: 63  INDYYIHVSHFAKITDTHYIEELNVNHIYEWLSSMNVSNQTKLTRLKCLKAFLGRCHDNG 122

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           ++ IN   +V+             +E                +   A   +  +G+R   
Sbjct: 123 WIDINFWRNVKIKVDTPVKEGATDREINILLSVLDLTRFLDLRDATAILLMYQTGIRVGT 182

Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             +   +H              ++N+              +++     +++      K  
Sbjct: 183 LAQLEHKHVDLEAKVLSVDGGIIKNHESIYLPFDDALARLLDVLMKQNEIIRREYQAKNG 242

Query: 255 FFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +                   S      A + G+   + H +R+  A      GA    + 
Sbjct: 243 YLFITKSGGSVLTSPTNNIISKRMTKHAKEYGLKNINPHAIRRGFAKNLLKKGANVALIS 302

Query: 309 ATYGWKTVDQAETYTK 324
              G   +     Y  
Sbjct: 303 KALGHSDISVTTRYLH 318


>gi|262369098|ref|ZP_06062427.1| phage integrase [Acinetobacter johnsonii SH046]
 gi|262316776|gb|EEY97814.1| phage integrase [Acinetobacter johnsonii SH046]
          Length = 386

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 101/368 (27%), Gaps = 54/368 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +P  V   R R+G I  YF R+     I LP+P  +  I A          K E+   
Sbjct: 8   KSMPTGV---RIRNGAIQIYFERRKKEYNITLPHPPSAEGISAAAKIRAQLVTKAEWGIL 64

Query: 64  PRKKP------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
                                     + +  +Y K     +   +++  + +  +   + 
Sbjct: 65  TDSDIAEARGQLVDDDAVIVNGGILFQEVAQKYLKFCESNT---DTKKGYLNILEFHWMG 121

Query: 105 KSGDFDYRKITTKHI-RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                    I+ ++I  + ++    T  +    L  +R +F  A+  +++  NP  S+  
Sbjct: 122 YFALMPINSISIENIKEAIIDRDFKTAKTLNNCLIPLRGVFDCAMENKFITENPLDSIRN 181

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            K + +   P+++ +M           +         +E   ++G R S+          
Sbjct: 182 KKVQVDIPDPFSRPEMDAILENLKTTLKGDEILYYWYYELAFWTGCRPSELIALKESDFD 241

Query: 219 NNIFSIKTQKTGTI------------ITVELPDGFMKL---LAMTPIGKETFFINNDKQK 263
                 K  K+                 V L     K    L      +           
Sbjct: 242 FFSGMFKVNKSRVRGVEKNVTKTHTAREVCLNARSKKAAQELIKYKKDRNIQSKYLMLCP 301

Query: 264 MNATQF------SIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTV 316
                F           A     G+     +  R   AT+    G     +    G    
Sbjct: 302 ETGEPFFNEKPPRNRLVAALKACGIRHRPAYNARHTYATMMLMDGLNPVFVSNQMGHSLQ 361

Query: 317 DQAETYTK 324
              + Y K
Sbjct: 362 MMMKRYAK 369


>gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125]
          Length = 308

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 76/298 (25%), Gaps = 59/298 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSM 140
              A ++  ++  +    IR +       +    +   +    ++ + A     Q L ++
Sbjct: 4   KRYAKSTIEAYLFWIAAYIRFNNMQHPSSMGDTQVELYLNHLVNSQNVAQGTQAQALNAL 63

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+K  ++         +  ERP    +     T+ ++          ++  LA   L 
Sbjct: 64  SFLYKEIIKSPLSLSLDFVKSERP---RKLPIVLTQTEVSALFKHCI--TKHYLACALLY 118

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------------------- 235
            SG+R  +  R  +Q +  +   ++                                   
Sbjct: 119 GSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQIQLVDNYLQL 178

Query: 236 ------ELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQFSIW 272
                         LL                                       Q    
Sbjct: 179 DLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHIDEKQLQRA 238

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            K  A  A +NK  + H +R   AT    +GA    +    G   +   + YT    +
Sbjct: 239 VKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 296


>gi|291544716|emb|CBL17825.1| Integrase [Ruminococcus sp. 18P13]
          Length = 377

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 110/364 (30%), Gaps = 54/364 (14%)

Query: 14  ERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +  + G   Y  R       G  R++       S         L  S   +    +P   
Sbjct: 7   KGKKDGLQQYRVRVNYTDANGKYRQVERTAYGLSE-----ARKLEASMQAQYTSGAPHSG 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T+  L  EY  +     +   +  S E  F   I    G+    K++ + ++      
Sbjct: 62  GMTVSELYEEYVCAKK-HEVRATTLNSLEKNFRLYIAPLIGNVKLNKLSARELQCWKNKV 120

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQ 180
             T     S  Q  T++  +  ++V+  Y+  N      + + P  +T   +       Q
Sbjct: 121 DITGLAIGSKKQVYTTLNTILNYSVKIGYIEKNQLKVVGNFKDPYFQTPTDKLHFYTPEQ 180

Query: 181 QFKSFWSEGSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             +                     + F    Y+G+R  +        ++ ++  ++    
Sbjct: 181 FVRYIHEARKVAEQSNSLTDWGYFVFFMIAYYTGMRRGEINALTWDDVEGDVIHVRHSVA 240

Query: 230 GTI---------------ITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNAT 267
             +                 +++P+  M++L      +E         ++    + +  T
Sbjct: 241 QCVDGSDMVTSPKNRSSFRDLQVPEPLMEVLQEHKSRQEQVPGFLNSLYVCGGSRCLRNT 300

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
                 +  A+ AG+     H  R   A++  + G   HE+    G   V     TY+  
Sbjct: 301 SIRAQNQRFASGAGLPFIKVHDFRHSHASLLVNNGINIHEVARRLGHSNVSITLNTYSHL 360

Query: 326 ADRI 329
             + 
Sbjct: 361 YPQE 364


>gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 428

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 20/258 (7%)

Query: 91  SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQFL 137
           ++ ++  +        +         D +  ++T   I       K        +AI+ L
Sbjct: 129 TKANYRKFDICKRHFAKFLEEKYARTDLNIIELTPIVIHDFDVYLKTVVGQCFNTAIKTL 188

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194
            + + +  +  +      +P L++   K K       T E++           +    R 
Sbjct: 189 KTFKTVIIFGRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEVDTIMHKEFATQRLVNVRD 247

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL   D       ++                        + +  +     E 
Sbjct: 248 IFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPKIIIKKYEG 307

Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
              N     + +  + + + K  A   G+NK  + H  R   AT+    G     +    
Sbjct: 308 KAKNGRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G  ++   + Y +  ++ 
Sbjct: 368 GHTSITTTQLYARITNKK 385


>gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
 gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1]
          Length = 391

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/387 (11%), Positives = 101/387 (26%), Gaps = 51/387 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             +   ++ +   R     Y    G  +R              Y +++         +  
Sbjct: 7   KSKKYGYIYQVDMR-----YKDPYGVTQRHTKSGFRTKKEARNYEASI--IEKSNAKVLI 59

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSG 122
           P  +  TL  +  EY +       A  +   + +++   +    G+     ++   +++ 
Sbjct: 60  PESRKRTLNDVFDEYVEIEGKIKWAPATLYYYIKTHQTYVKGNFGNVPIESVSYVSLQAH 119

Query: 123 VESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---------- 170
           +       +  +         V+FK  VR  Y++INP  ++  P +  +           
Sbjct: 120 INELSQRYNYPTVKNIKKVYSVIFKHGVRAGYISINPVPNILLPNKPEKKEGVEIISDDD 179

Query: 171 --IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                         + F  +      ++   L  G          +   + +    + Q 
Sbjct: 180 LKRLIEEIIKASPNRCFAKKAQYKYKSYGIALLIGRYTGLRISEVMALKKEDFDLERNQL 239

Query: 229 TGTIITVELPDGFMKLL--------------------------AMTPIGKETFFINNDKQ 262
           T             ++                                  +    +    
Sbjct: 240 TIRRRIEHAGLKRKEIYLTERLKTKSSKARVEICSILSEYLKSWFVENPYDFVICDEHGD 299

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
            ++   F    +  A K  +    H +R   AT    AG     +       TV+     
Sbjct: 300 FISPVNFQERIRDTAKKLDIKFHYHMLRHTYATELMVAGVNPIVVRDLLRHSTVNTTWNV 359

Query: 322 YTK--GADRIRLGIKNSRRISSVVDSD 346
           YT     D+ ++           +D+D
Sbjct: 360 YTHPSRDDQRKVLDDLYDDNVEFMDND 386


>gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
 gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3]
          Length = 320

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 86/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I         K++   +   +         A++   
Sbjct: 10  KEHMISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLSEDDVERFLSHLAIDEKVAVKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +         + ++  +  ++   + +     T+++++  +       + +L  +
Sbjct: 70  LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVR--RFVQHIDPKYKLHIQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  +Q +  +  +++                                
Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVSLARDY 187

Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +                        +  L   T +  +       +  +N +  
Sbjct: 188 YQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSVDDDTGEFRRHHINESAI 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K     AG+ K  + H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRATKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50]
 gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)]
 gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
          Length = 338

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K +I  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVIELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|84516978|ref|ZP_01004335.1| possible phage-related integrase [Loktanella vestfoldensis SKA53]
 gi|84509096|gb|EAQ05556.1| possible phage-related integrase [Loktanella vestfoldensis SKA53]
          Length = 386

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 17/334 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  +RI L      +   A  +A    +  +E     +  P T +  + E+         
Sbjct: 54  GRRKRITLGGYPAISLSKAREAARLALSEIQEGTFGRKNAPATFETAVEEWYAREQRAKK 113

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFK 145
           +             ++   G     +I    +   ++        + A +    +   F 
Sbjct: 114 SFRQVEQAMRL--HVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFN 171

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +A+ ++ +  +P  ++ RP  +    R  ++++    +++    G       + L+ +  
Sbjct: 172 FAIERDLLMSSPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLILTAQ 231

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINND 260
           R  +        L  +       K          V L    + LL+  P       I   
Sbjct: 232 RRDEVAGMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLIFTT 291

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA-DAGATAHELMATYGWKTVD- 317
             +   + FS    A   ++ V +   H +R+ +AT  A +   T   +       +   
Sbjct: 292 TGRSAVSGFSKAKAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVVDRILNHVSGTV 351

Query: 318 --QAETYTKG---ADRIRLGIKNSRRISSVVDSD 346
                 Y +G   ADR        + + ++V+S+
Sbjct: 352 RGVTAVYLRGEHLADREAALAAWGQLVENLVNSN 385


>gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae]
          Length = 338

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 116/348 (33%), Gaps = 41/348 (11%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M+   +      +PP V +     G+  Y F+  +GR IRL          A  +  +  
Sbjct: 1   MSGKRKNPADNWMPPRVFR-----GRSAYEFKHPNGRTIRLC---------ALNADKSVV 46

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
               E   +  K     + LI+++  SA +  L+ +++  ++ Y  ++I   G  +   I
Sbjct: 47  WSHYEQYVNDEKHIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNI 106

Query: 115 TTKHIRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +HIR  ++ R     + A +  + M  +F+W   +  V  NPC  V+   +  E  R 
Sbjct: 107 KPEHIRKYMDKRGLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVK---QYKEIARD 163

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
               D +    +       ++A E       R  D        L      IK  KTG   
Sbjct: 164 RYVTDTEYHALYSISPLIVQIAMELAYLCCARQGDILALRKDQLMEAGIYIKQGKTGKSQ 223

Query: 234 TVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKA------ 280
                +   K + +                   + +      F+  +     +A      
Sbjct: 224 IKGWSERLTKTIKLAKQLPLKEGVNSLYVLHQANGKLYTRDGFNSRWLKAKEEAAKKYPE 283

Query: 281 -GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              N + H ++    +       T  E  A  G K + Q   Y +  +
Sbjct: 284 LDFNFTFHDLKAKGISDL---DGTLQEKQAISGHKNIGQTARYDRKIE 328


>gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 404

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 110/402 (27%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           + +     + S       +  +R +FK+A +   +     L      +K +    +  + 
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKVQTRNEFQAKR 182

Query: 178 --------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                                     ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             NDK               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D  ++      ++  +
Sbjct: 363 INLKAIQERVGHSDYKTTLEIYTHVTD--KMAKDMMNKLEGI 402


>gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 27/298 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125
           L   +  Y           +S  S++   +  +R  G     Y +I  + +    +    
Sbjct: 6   LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           R+ + ++   ++  +R ++  A+       +  L            +     +  +    
Sbjct: 65  RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPTESLRLLMT 124

Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                       R      L+ G+   D        +++ +     QKTGT + VE+   
Sbjct: 125 APLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRSGVLRYNRQKTGTPMLVEIQPV 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284
             +LLA                                    F+   K  A   GV    
Sbjct: 185 AKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           +++ +R   AT   + G     +    G +++   + Y K     R+   N     S+
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKACFESI 302


>gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 91/335 (27%), Gaps = 67/335 (20%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +  R   TTL+  I+ +          + ++  ++    +Q+ R + +        +
Sbjct: 3   ARRSGDRSGGTTLEQAIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHR 62

Query: 118 HIRSGVES-------------------------------------------RKHTPSSAI 134
             R+  ++                                           R H P+S  
Sbjct: 63  PARARGKAPATGKTPATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLARTHAPASIA 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190
           + + + R L ++  R+  V  N    +  PK +         +   +          EG 
Sbjct: 123 RKVGAARALLRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGL 182

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLA 246
           + R   E L  +GLR S+ C   + H+              K      V L    +  + 
Sbjct: 183 RDRAMLETLYGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIE 242

Query: 247 MTPIGKETFFINNDKQKM------NATQFSIWFKA---------KATKAGVNKSAHGVRK 291
                ++         +       +     I  +                 +   H +R 
Sbjct: 243 RYLERRDELADPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGRADLHPHALRH 302

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             AT   D GA    +    G  ++   + YT  +
Sbjct: 303 TCATHLLDGGADLRAIQKLLGHASLATTQRYTHVS 337


>gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 409

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 107/400 (26%), Gaps = 75/400 (18%)

Query: 1   MTPSLRLPPFVTKE--RTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPK 57
           M         V K+    R    +Y +R   G + R   Y      +      +      
Sbjct: 1   MQKRKDHKGRVLKDGETYRKNDGLYMYRWIGGDKKRHAVYCSTLEGLREKEKEIQNDLRD 60

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITT 116
                S      TL  +   ++       L   +R ++   ++   +   G+   ++I  
Sbjct: 61  GIQQGSS---NITLNDVYKMWKNDKV--GLKQTTRNNYIYMYEHFVMNDFGNRKIKEIRK 115

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRK 167
             +R       +S+K + ++     T +  +F  AV   Y+ INP              +
Sbjct: 116 SDVRRYYNGIVDSKKMSVATLESIHTVLHQVFILAVEDGYIRINPSDLVLGDVKRSHNFE 175

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           T      T    + F S+ ++  + +     F F L +G R S+      + +  +   I
Sbjct: 176 TPKRHALTIPQQEAFVSYINKSEKYKHWLPLFTFFLGTGCRVSEVVGLRWEDVHMDENYI 235

Query: 225 KTQKTG----------------------TIITVELPDGFMKLLAMTPI------------ 250
           +                             I   LP+    +L                 
Sbjct: 236 EINHNMVYYQRDKGKCYFSVTSPKTTAGYRIIPMLPEVKQAILNEKKYQEEVGLTCQASI 295

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAG-----------------VNKSAHGVRK 291
               +  F+N +    N    +   K                         N S H +R 
Sbjct: 296 DGYTDFIFLNRNGFAHNPQTINRTIKRITLAYNEEEIERAERERRAPVLLPNFSCHNLRH 355

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             AT   +       +    G K +      Y +     +
Sbjct: 356 TFATRYCENETNLKVIQEIMGHKDIATTMEIYAEATKEAK 395


>gi|329116545|ref|ZP_08245262.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326906950|gb|EGE53864.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 381

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 104/371 (28%), Gaps = 48/371 (12%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++   +Y            G++++      +               K       
Sbjct: 3   ITEYKKKNSTTVYRANIYLGVDHITGKKVKTSVTGRTKKEVKIRIKEAQHNFKTNGHTVT 62

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +  P    K L   + KS     +   +   +     + +I   GD    K++  +I+  
Sbjct: 63  KAVPVENYKELAELWLKSYEMT-VKPQTFIATKRMIHNHLIPVFGDIKLDKLSVSYIQGH 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT------- 175
           +              +  + + ++ V  + +  NP   V  PK      +          
Sbjct: 122 INELSKEFVHFGTVHSINKRVLQYGVSLQLIPFNPARDVILPKAVKPDNKAIKFIDYDDL 181

Query: 176 ---KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                 M++  +         + +  LL +G R  ++       +     +I   K    
Sbjct: 182 KALMSYMEKLSNKKYSYYFDYVLYNILLATGCRFGEAIALTWSDIDFENATIDINKNYNR 241

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFF-------INNDKQKMNATQFSI 271
                           + +    + LL +    +   F                    + 
Sbjct: 242 LVDIVGTPKSKAGYRVISIDQKTVNLLRLYKNRQRQLFSEVGGEAPKVVFATPTRKYQNT 301

Query: 272 WFK-----AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +      +  + G  + + H  R   A++  +AG +  EL    G  T+      Y+ 
Sbjct: 302 AIRQGSLDRRLKEIGCPRFTFHAFRHTHASLLLNAGISYKELQYRLGHATLAMTMDIYSH 361

Query: 325 GA-DRIRLGIK 334
            + D+ +  + 
Sbjct: 362 LSKDKEKEAVS 372


>gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 337

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 87/313 (27%), Gaps = 41/313 (13%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKI 114
            P      +   I  Y         +VN+  ++   F  ++                 KI
Sbjct: 2   KPTDFSKYISDFIIRYL--PDERGASVNTITAYRDTFVLLLDFIEKEKLLKVEKLTLAKI 59

Query: 115 TTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             + I   ++     RK + S+    L ++   +++   +    ++ C  V   + K   
Sbjct: 60  KKETIIEFLDWIQKERKCSDSTRNMRLAAIHSFYRYLQYENLDNLHECQKVLSIRSKKTR 119

Query: 171 IRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               T   +       QQ  +  + G +          +G R  +        L+     
Sbjct: 120 KESITYLSIEGIRLLLQQPDTTTTRGRRDLALLSLTYDTGARVQEIIDLTPSRLRLGKPP 179

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSIW 272
           +            +P    +++ +    +E             F N+ K+K      +  
Sbjct: 180 VIKIIGKGNRVRLVPMLDAQIIHLKNYMEEHRLDQPTANIHPLFFNSRKEKFTRAGINHI 239

Query: 273 FKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  A            S H  R   A     AG     +    G  +V   E Y +
Sbjct: 240 LHKYMDMARKADNTLIPDKASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYAR 299

Query: 325 GADR-IRLGIKNS 336
              R  R  ++N+
Sbjct: 300 ADSRQKRKALENA 312


>gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 360

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 120/360 (33%), Gaps = 33/360 (9%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-----TGS 54
           ++   R P  ++       G   Y   +   +R  +           Y  A+        
Sbjct: 13  LSGKRRKPWAYL-------GPKYYSIEEKRYKRDFIACFKTQKEAETYKLAMFTNNIEML 65

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
                 I   ++K  T + +   + KS     +   ++ ++E  F +  +K    +  KI
Sbjct: 66  ENTDVKITKNKEKGITFEEIYQLWIKSKE--DVKDGTKTNYEINFKR-SKKLCGLEIAKI 122

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----E 169
               +++   S   T S+     +    ++ +A+  +    N    ++ P ++      +
Sbjct: 123 NGIILQNIFYSLDLTNSTLRLLRSFWSNIWDFAILNDMATKNYAKFLKLPVQEKGKKTGD 182

Query: 170 GIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             RP T ++         ++  +  +       L Y+GLR  +  +   +++    F  +
Sbjct: 183 RERPLTYDELQALWNNLYNYEIDKYKIIDIILILCYTGLRIGELLKVNRKNIYLKDFYFE 242

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG 281
            +K+ +   V       K+L +      +      ++      +   F   F+      G
Sbjct: 243 VEKSKSKAGVRKVPIADKILDLFKNRYFSKDTFLWQRYDGLEYDYDSFDNHFRILFRDMG 302

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
           ++  S H  R   AT+ +D  A    ++   G  +     E Y    +  +L  +    I
Sbjct: 303 LSYHSLHDTRHTFATLLSDNVADKDAVIKMIGHSSYKTTSEVYVHK-NIKKL-KEAVDEI 360


>gi|325125902|gb|ADY85232.1| Integrase/recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 323

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 12/262 (4%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
            L+++Y  +      +  S   + +   + + K G      +T    K++     +   +
Sbjct: 47  ELLAKYFAAKRAEGCSEKSLAYYRATIVKALSKIGSNAIEIVTDQLRKYLTDYQTAHNSS 106

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + + +        ++ E++++      + 
Sbjct: 107 KVTIDNIRRILSSFFNWLEDEDYIVKSPIRRIHKVRVVKTVKETYSDEELEK-LRDGCDN 165

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            +     +FL  +G+R  +      Q +       I   K                L   
Sbjct: 166 LRDLAMIDFLSTTGMRVGELVLLNRQDINFQERECIVFGKGSKERVTYFDARSKLHLQRY 225

Query: 249 PIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
              ++               ++  +      K    + G++    H  R+  AT + D G
Sbjct: 226 LESRDDANEALFVGLKWPHNRLTISGVESRLKVVGNRLGISAVYPHKFRRTLATKAIDKG 285

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               +L        +D    Y 
Sbjct: 286 MPIEQLQRLLEHSRIDTTLHYA 307


>gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195]
 gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195]
 gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195]
 gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195]
 gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678]
          Length = 287

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 84/267 (31%), Gaps = 21/267 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L+ ++         +  +R ++     Q+ +   +  +  IT + + +        R 
Sbjct: 2   SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPFDNITDEQLTAYFRYLNLERH 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+ ++    L  +   ++  + +++           PKR  +  +  + +D+        
Sbjct: 61  HSRATLKLQLNGIHFFYEHVLGRDFTVQLSL-----PKRPHKLPQLLSCQDIAALLCHCQ 115

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245
              + R         GLR S+     V  +      +K  +        V +    + LL
Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                             ++    ++ + F       A  A +    S H +R   AT  
Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
             AG   H+L A  G  ++   E Y  
Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261


>gi|30063432|ref|NP_837603.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56480016|ref|NP_707880.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
 gi|30041685|gb|AAP17412.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           2457T]
 gi|56383567|gb|AAN43587.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str.
           301]
          Length = 281

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 84/272 (30%), Gaps = 25/272 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R  
Sbjct: 1   MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGE 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + + A    +SM  ++ W   + YV  NPC  V + K K        KE          
Sbjct: 61  QSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAP- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                 +A E       R SD      + + N+   I+  KTG              +  
Sbjct: 120 --LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEK 177

Query: 248 TPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISAD 299
                       N    +     F+  +     +AG       + + H +          
Sbjct: 178 AKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL--------KA 229

Query: 300 AGATA-----HELMATYGWKTVDQAETYTKGA 326
            G +       +     G KT  Q   Y +  
Sbjct: 230 KGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262]
 gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262]
          Length = 400

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 107/372 (28%), Gaps = 59/372 (15%)

Query: 13  KERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++R+++         G    G  IR      +         L     + E          
Sbjct: 15  EQRSKN-SWRMRVTVGYDYKGTPIRADRTTRTKNERERERELRNFITELEQNGYTAPARM 73

Query: 70  TLKWLIS-EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           T K  +  EY       +L V +    ++S   +     G     KITT HI + V   +
Sbjct: 74  TFKAFVENEYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQ 133

Query: 128 H--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                                +P S      ++  +F+ AV  + + INP   V  PK  
Sbjct: 134 KPGARLDVKPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTT 193

Query: 168 TEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 +T  +++   +    E  + ++     L SG R ++     V+H+      +  
Sbjct: 194 KRPPTIYTPAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDELTF 253

Query: 227 QKT---------------------GTIITVELPDGFMKLLAM---------TPIGKETFF 256
           ++T                        I   L +     ++               +  F
Sbjct: 254 EQTLVAKAGEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLF 313

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
            + + + +        +K    +  +     H +R  SAT+  + G     +      K+
Sbjct: 314 ADMEGKPIRPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKS 373

Query: 316 VDQA-ETYTKGA 326
                  Y    
Sbjct: 374 SVTTSNIYAHVL 385


>gi|319937111|ref|ZP_08011518.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
 gi|319807477|gb|EFW04070.1| hypothetical protein HMPREF9488_02353 [Coprobacillus sp. 29_1]
          Length = 355

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 104/314 (33%), Gaps = 36/314 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            TL  L   + +      +   +  + E+ +  I R  G  +   I    IR        
Sbjct: 1   MTLDELYEIFIEDKKI-DIIQATVETIENRYVVISRYFGKSNISNINKIAIRKYQNYLLN 59

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
              ++ S     +  ++ +F +A+   Y+  N   SV    ++ +  +     +++QF  
Sbjct: 60  ECNYSVSHVNNLIGVLKQIFNFALENGYIKTNTIASVSMINKRVKIPKEKVIWNLEQFLK 119

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
            + +   +  ++ F  L + G+R  +        +     +IK   T             
Sbjct: 120 FNEYINNTTDKVIFNMLFFLGIRKGELLSLRWNEVSFAQKNIKIISTANREKGKGQVITP 179

Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQK--------MNATQFSIWFKAKA 277
                    V +     +L+    IG+   +  + KQK        M+ T      K   
Sbjct: 180 PKTVHSNRIVVMDKFLCELIEEYYIGQRKIYGKDIKQKFVIGGDKMMSFTSLQRLLKKYL 239

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI--RLGI 333
            K  +   + HG R   AT+ AD       +    G + ++   +TY     +   +L  
Sbjct: 240 AKTQLPEITLHGFRHSHATMLADFSTDIKAISERLGHENIEITLKTYIHTNSKAQFKLTK 299

Query: 334 KNSRRISSVVDSDD 347
           +  R + S   S  
Sbjct: 300 EIERNVQSHNKSKF 313


>gi|312875769|ref|ZP_07735763.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
 gi|311088704|gb|EFQ47154.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LEAF 2053A-b]
          Length = 329

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 77/264 (29%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           +  ++ +  +      +  S   + +  + +  K    + R++ T  IR       + + 
Sbjct: 52  EEFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDIRTYLTEYQQEKN 110

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   + Y+  +P   + + K        +T E +++ +    
Sbjct: 111 SSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSC- 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +        +                  V         L 
Sbjct: 170 EEPRDLALIDILTSTGMRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLL 229

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+                ++         +    K  + K   H  R+  AT++ D
Sbjct: 230 TYLQGRTDDNPALFVSLRAPHDRLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAID 289

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G K +D    Y 
Sbjct: 290 KGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|77465807|ref|YP_355310.1| integrase [Rhodobacter sphaeroides 2.4.1]
 gi|77390225|gb|ABA81409.1| possible integrase [Rhodobacter sphaeroides 2.4.1]
          Length = 332

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 22/321 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
               G R R       T   A + AL     +           TT++ L + Y       
Sbjct: 17  WWEDGARRRYRL-DARTRAEAEVEALDRIRRETLP-----SGATTVRDLWAAYLADRKGR 70

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    L  +R  
Sbjct: 71  PVE----RNMRSSGNAVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTC 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             WA ++  + +     +ERP +     R  T  ++ +      E    +LA   LL + 
Sbjct: 127 LLWAAKRGLIQV--APHIERPAKPAPRDRYLTHAEVSRLMEAECE-PHIKLAITVLLTTA 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            R           +      I+ +               +  ++    +           
Sbjct: 184 ARVGAVLELTWDRVDLERGQIRLRVEAEGPRKGRATVPINNTLRAALTSARAAALSDHVI 243

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +            F    + AG+ + + H +R  +A   A+AG    E+    G   V  
Sbjct: 244 EWAGGPVKCIRKGFLRAVSNAGLLDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQI 303

Query: 319 A-ETYTKGADRI-RLGIKNSR 337
               Y + + +  R       
Sbjct: 304 TSSVYARFSPQHLRKAADALE 324


>gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 84/281 (29%), Gaps = 22/281 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG 122
            T    ++++RK       A +S  ++    +++           D  ++++  + +   
Sbjct: 111 QTFDEYLADFRKRVG-KDRAYSSYDNYRKRRNRLASFLEYEYHVKDIAFKELKREFVEKF 169

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           V            +    L  ++++   A +  ++A +P          +   R  +  +
Sbjct: 170 VVYLSTVKGLASGTIHSTLKKLKLMTYTAYKNGWIAADPFAGFYVRPEYS-ERRYLSASE 228

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R AF F  ++GL  +D  +     +  +    +        T 
Sbjct: 229 LQAVIDVRLPNYRTGINRDAFVFCAFTGLSHADVVKLTHADIHTDDNGERWIIDRRQKTG 288

Query: 236 ELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      ++L                 K      ++  +  A  AG++   + H  
Sbjct: 289 TQFRVKLLPVAEMLYERYKDMHLSGDRVFPLKGTYNTLNMSLRHVARHAGLSFNPTIHLA 348

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT      G     +    G K +   + Y K  +  
Sbjct: 349 RHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKITNDK 389


>gi|261207999|ref|ZP_05922677.1| predicted protein [Enterococcus faecium TC 6]
 gi|260077757|gb|EEW65470.1| predicted protein [Enterococcus faecium TC 6]
          Length = 378

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 112/379 (29%), Gaps = 51/379 (13%)

Query: 10  FVTKERTRHGKIIY-----YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYI 61
           ++  +  ++GK +Y     Y      +R ++   +           +  L      +   
Sbjct: 2   WIETKTDKNGKKVYKYNERYIDPKTRKRKKVSITYKNKSRETQKVALLELNKKIDIKLNE 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIR 120
            + +K   T   L+ E+        +  ++     +  + I +K  +      I T  + 
Sbjct: 62  KTLQKPDLTFHELVEEWLVIYK-RQVKESTYYPTNNILNTIKKKIPETYIVSGINTVDLN 120

Query: 121 SGVESRKHTPSSAIQFLTSMRV----LFKWAVRQ-----EYVAINPCLSVERPKRKTEGI 171
           +  E   +    + ++++ ++     LF +A+++       +           K      
Sbjct: 121 NIFEDMIYKDDLSNKYVSVIKSKLNLLFSYAMKKGYVEKNPINEVVIDYKRESKTIKIKD 180

Query: 172 RPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKT 226
           +    ++ ++      S   +  L F++L  +G+R  ++       +     +    I  
Sbjct: 181 KFLEDDEYKRLVDFTTSHNKRYSLLFQWLYLTGMRPGEAIALSKDDVHITNNNASVVING 240

Query: 227 QKTGTIITVELPDG---------------------FMKLLAMTPIGKETFFINNDKQKMN 265
                  ++                              L       +  F         
Sbjct: 241 TMMYRERSIADMKKSDSTKTAAGMREIDLPKKAIAIYNELLELNPNGQFLFQTTKGTPFQ 300

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
            T  + + +       ++K  S+H  R    +  A+ G   + +    G +  D  E  Y
Sbjct: 301 LTAINTYLRNHKADMKIDKKLSSHIFRHTHISKLAELGTPLYAIQDRVGHENSDITEKIY 360

Query: 323 TKGAD--RIRLGIKNSRRI 339
                  + +L  ++  ++
Sbjct: 361 LHVTKGVKEKL-KEDIEKL 378


>gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 396

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            ++ +++     SL  ++R +  S  + +     D  +  +T + + S     +      
Sbjct: 108 FLTFFKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHL 167

Query: 134 IQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L ++      ++            + K         + E++ + +    EG
Sbjct: 168 NTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEG 227

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD       ++               +   +       
Sbjct: 228 KFTKLQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQET--WLIYKSVKTGIDVRLPLY 285

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L                +N   +  + +  +    A A  A ++K  S H  R  +AT+ 
Sbjct: 286 LLFEGKGLRVLETYKDDLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +GA    +    G K+V   + Y    D
Sbjct: 346 IYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 315

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 92/311 (29%), Gaps = 37/311 (11%)

Query: 60  YINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--------FD 110
                    T L+  ISE+  S       A ++  ++ +    +   +           D
Sbjct: 6   QPQRGAPAATPLEADISEFATSMDRERGSAAHTVRAYSADLRDLAAHAARQGVTTSAGLD 65

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              +     R         P++  +   ++R    W +R   V  +P + ++ P+  +  
Sbjct: 66  LDVLRDWLWRGSQARLA--PATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHL 123

Query: 171 IRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            R   +E M         Q         +   A E L  S LR S+     +  +  +  
Sbjct: 124 PRVLAREQMSALLADLAAQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRL 183

Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSI 271
           +++          V       + L           +               ++ +     
Sbjct: 184 TVRVVGKGDRERVVPFGVPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYG 243

Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA- 326
              +    A +  S     H +R  +AT   D GA    +    G  ++   + YT  + 
Sbjct: 244 LVASLL--ADIPGSGPQGPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSI 301

Query: 327 DRIRLGIKNSR 337
           +R+R   + + 
Sbjct: 302 ERLRRSYEGAH 312


>gi|315143721|gb|EFT87737.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
          Length = 389

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 104/382 (27%), Gaps = 53/382 (13%)

Query: 14  ERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ER + G        G   +G  IR+    E        + L     + E          T
Sbjct: 9   ERLKSGNYRLRVTVGYNENGNPIRINKTVEVKSQRKAYAELDDWIEELEEHGYEDISTIT 68

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG------- 122
            +   +   K      L   +   +      + +    +   R+I    I+         
Sbjct: 69  FENFYNNMWKKEAKTILEPRTIREYSDIIDKRFLPSLKNKKMREIKPFQIKDIVLAATPL 128

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKE 177
              S   +  +  +FL ++  +F  A  Q  +  +         +   +K    +P++ E
Sbjct: 129 SKRSETLSRKTKKRFLNALSSVFSVARDQYRIITHNPVADVRLPKESVKKKGTPQPYSIE 188

Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           +++            + +        +G R  +              +++  +       
Sbjct: 189 EVRLMLDALEEHANLKTKALVMTAFITGAREGEIAALEESDFDFTAMTVQFHQRIVLDEN 248

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------------- 265
                          T+ +P  +++++       +T          +             
Sbjct: 249 KKYQRRDGLKASESKTIPVPQSYLEIMEGFMAINQTARKELRIDPKHKYVFGSPDGNFEL 308

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAE-TY 322
            T     +     +AG+ +   H +R  SA+ + AD       +    G K        Y
Sbjct: 309 PTSLYRNWNRFIKRAGLRQIRFHDLRHTSASFLLADPTIPIKTVQELLGHKDYRTTMNIY 368

Query: 323 TKGADRIRLGIKNSRRISSVVD 344
               +  +     S R S  ++
Sbjct: 369 GHALEETKR--TASDRFSDFLN 388


>gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894]
          Length = 248

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 21/238 (8%)

Query: 114 ITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           +     R+ + +R+   S A    + L  +R L +   ++  V      ++  PK+    
Sbjct: 1   MRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSL 60

Query: 171 IRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +P +            Q        ++       L   GLR S++       LQ    +
Sbjct: 61  PKPLSDTQAITVVSNEAQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLQKGATT 120

Query: 224 IKTQKTGT--------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           ++    G          +  +  + +  L        E  F      K+         + 
Sbjct: 121 LRITGKGNKTRLVPLLSVVFDAVEKYRTLCPHDLEAAEPLFRGARGGKLQPAIIQRAMQK 180

Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +  G+    + H +R   AT     G     +    G  ++   + YT G D  RL
Sbjct: 181 LRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 237


>gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii
           M21/2]
          Length = 392

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 106/369 (28%), Gaps = 42/369 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R    + K +   G+    + K H    ++ + +    + A +  +           + +
Sbjct: 12  RRGENIHKRKD--GRWEGRYIKAHTPEGKIQWGYVYGTVYAEVKRVLIQKKAEAGFYNLK 69

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV- 123
           +   T   L   +  S    ++  ++   +       ++          +    +   + 
Sbjct: 70  RTDLTFDALAEVWLHSQR-NAVKESTYAHYSYTLHKYLLPVLSKVPVASLEESFLEQAMQ 128

Query: 124 --------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    SSA + L+ +R + K+A     +     L V  PK   +   P +
Sbjct: 129 QIIAPIDAAHKPLGNSSARECLSMLRRICKYA-AHLRLIRPMELEVALPKAIDKISVPLS 187

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY---------SGLRCSDS-------------CRAG 213
             + Q+   +  E   PR     L            GL+  D              CR  
Sbjct: 188 PAEQQRLYQYVQENPTPRKIGLLLGVELGLRIGEICGLQWGDFDLKLGTLKINRTVCRIS 247

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFS 270
            ++    +     +   +   + +P      +K L         F   N+ +      + 
Sbjct: 248 CENGHTKVVIQTPKTRTSRREIPIPKQLLIMLKKLRGCVSNAAWFLSGNESKPTEPRCYR 307

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-AD 327
              K+   +A V +   H +R   AT    AG     L    G    +   + Y      
Sbjct: 308 KSIKSYLKQATVRQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLT 367

Query: 328 RIRLGIKNS 336
           R R  +   
Sbjct: 368 RKRREMNRI 376


>gi|153953104|ref|YP_001393869.1| recombinase [Clostridium kluyveri DSM 555]
 gi|146345985|gb|EDK32521.1| Predicted recombinase [Clostridium kluyveri DSM 555]
          Length = 321

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 95/296 (32%), Gaps = 20/296 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRS 121
             T +    EY   +    L+ ++  ++  +        G        D + I +  +  
Sbjct: 20  KKTYQEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKNKNCGGLDVKTIESYVL-- 77

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
            ++ +    ++   +L ++  + K+ +++ Y+     +   + +++ + I    + +   
Sbjct: 78  FLQEKGMKGTTINSYLQNISPVLKYCMKKGYIFEYFNIPYVKVQQEHKEIFTEDELNTLL 137

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVEL 237
           Q  KS      +       L  +GLR S+     V +L      I            + +
Sbjct: 138 QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPI 197

Query: 238 PDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
                ++L      +     +  F       ++ T           + G+ KS  H  R 
Sbjct: 198 SSSLYEVLDNYLNLRKGDGEDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGIHIYRH 257

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              T S +   +   L    G  T  Q   Y     R+   ++    I+  ++  +
Sbjct: 258 TFITRSVEKNVSPLILKNITGHATFKQLNNYYNS--RMSSMVEVIDNIAPQLNKKE 311


>gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 429

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/393 (11%), Positives = 93/393 (23%), Gaps = 68/393 (17%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTG-----------------S 54
           + T  G + Y  R     G++ R    +     P     L                    
Sbjct: 35  KVTPTGTVTYTVRWTKPDGKQGRKVVGYWPNMNPGEARELARKTIRDVDKKGDTTADVLE 94

Query: 55  TPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYR 112
             +R+          TL+  I   YR      + +   +                D    
Sbjct: 95  RRRRQVEAQQIVSGHTLRDFIDTRYRVWMIANNRSGEATVT---RAVRVFADFL-DHPLN 150

Query: 113 KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                   S            ++  + L ++R LF  AV    VA +P  +V+  K  + 
Sbjct: 151 GFNPWMFESWRAKCLDKGLSTATTNRDLAALRGLFSRAVEWGVVAEHPMRTVKALKESSG 210

Query: 170 GIRPWTKEDMQQFKSFWSEG--------------------------------SQPRLAFE 197
            +R  + ++  + +                                         + A  
Sbjct: 211 KVRWLSDDEEDRLRIALDAREERERSARDSANVWRKARGYELLEDLRTVPFVDYLKPAVL 270

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKE 253
             L +G+R  +  +     +      +              + L D  +  L      + 
Sbjct: 271 LSLNTGMRQGELLKLRWGRVDLENSILTVSDETAKSGKQRHIPLNDEALTALKQWRQQQS 330

Query: 254 TFFINNDKQKMNATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
            F +                +      A + +   H +R   A+    AG   + +    
Sbjct: 331 RFDVVFAGDSGAVRTDVKTAWARLLKDAQIQDFRWHDMRHHFASRLVMAGVDLNTVRELL 390

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           G   +     Y   A   +       ++     
Sbjct: 391 GHSDMTMTLRYAHLAPEHKAA--AVAKLGRRTP 421


>gi|254821280|ref|ZP_05226281.1| phage integrase family protein [Mycobacterium intracellulare ATCC
           13950]
          Length = 378

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 99/368 (26%), Gaps = 33/368 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-PKRE 59
           M    R   F    R R G+    +     +    P  + +        A          
Sbjct: 12  MARKRR--GFGRIRRERSGRYSAAYIGPDAKLHHAPRTYAAESDAEGWLANERRKIDLGT 69

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
           +    R    TL+    ++        L   +R  +ES     I+   G      +T   
Sbjct: 70  WGAVERSDGITLRAYADKWI---GQRQLRPRTRQHYESMLGRLILPDLGAAKIVTLTPAK 126

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +R           +      ++         Q+ V       +    + T          
Sbjct: 127 VRVWHAELGAEHPTRNAHAYALLHAICATAVQDEVLDANPCRIRAAMQTTRKRDVDVLTP 186

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
               +       + R +     + GLR  ++     + +  +  +++ ++  T    E  
Sbjct: 187 ADVDRLAGKMPPRLRASVILAAWCGLRWGETSELRRKDVSGDCATLRVRRAVTYRKGEFI 246

Query: 238 ---------------PDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKA 275
                          P     ++           + +           M+   +   ++ 
Sbjct: 247 VGQPKTAAGVRDVAVPPHIRPIIKEHLKNHVNRDLESLLFPVDAEGSHMHGDNYRTHWEK 306

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                G      H +R   A ++A +GAT  ELM   G  T   A  Y   A+      +
Sbjct: 307 ARASIGKPNLRVHDLRHVGAVLAAQSGATTAELMHRLGHTTPQMALRYQHVAEGR--DAE 364

Query: 335 NSRRISSV 342
            + R+S +
Sbjct: 365 IAERLSKL 372


>gi|254469282|ref|ZP_05082687.1| phage integrase [Pseudovibrio sp. JE062]
 gi|211961117|gb|EEA96312.1| phage integrase [Pseudovibrio sp. JE062]
          Length = 416

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 99/363 (27%), Gaps = 48/363 (13%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLI 75
           + Y   +G  RR+ L    E T   A   A        +          ++   T+  L+
Sbjct: 43  VQYRTHEGRSRRMSLGRYGELTPDQARDLATNVLATVRNGDDPLLKRENKRAAPTVNVLL 102

Query: 76  SEYR-KSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
             Y  K     +    +    E    + +  + G      +  + I     S + TP  A
Sbjct: 103 DIYMSKHVQVHN-KPKTMKDIERLLKRCVRSRLGLMKLNSVRRQDIAKLHHSLRATPRQA 161

Query: 134 IQFLTSMRVLFKWAVRQEYVAINP--------------------------------CLSV 161
            Q L  +   F  A        +                                     
Sbjct: 162 NQVLAVLSKAFNLAEVWGLRPEHSNPVRLVKRYKENERDRFLSEEELQRLGRTLELADQE 221

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             P     G R          K       +       LLY+G R S+      +H+   +
Sbjct: 222 GLPWIIKAGKRSAKHLPKDVAKRKTPVNPRALCCLRLLLYTGARLSEIATLKWKHIDFEL 281

Query: 222 FSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKA 275
            +    ++K        +    +++L+  P    + +      +  Q ++       ++ 
Sbjct: 282 ATFALPSRKGDERKPHPVSSSAIEILSEFPRVDGSPYVLPGCKDPTQPISIEVIENAWQR 341

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGI 333
               A +     H +R    T +A AG+ A  +      + V     Y    A  IR+  
Sbjct: 342 IRIHANIPDVRIHDLRHTVGTFAAQAGSNAFLISHLLRHRNVTITNRYVNHDAHPIRVLS 401

Query: 334 KNS 336
           +  
Sbjct: 402 EAI 404


>gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361]
 gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361]
          Length = 407

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 95/310 (30%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +   +  +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKKLDIHRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                            VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTNVETNVLLLDIPRSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLGK 400


>gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6]
 gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6]
          Length = 308

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 89/301 (29%), Gaps = 33/301 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVESRK 127
           T++ +   +R++     +  ++  ++     + I+ K G+ +   +   +          
Sbjct: 5   TIREISDAWRENKRPY-VKQSTLAAYMLILENHILPKFGESNELHENDVQGFVLEKLEGG 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  S    L  ++++ K+ V+ E++               + +   +  + ++  ++  
Sbjct: 64  LSMKSVKDILIVLKMVMKFGVKNEWMNYYEWDIKYPTDVAGKKLEVLSVANHKKILNYIQ 123

Query: 188 EG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              S P L     L +GLR  + C      +      +   +T   I +   +     L 
Sbjct: 124 SHFSFPGLGIYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELV 183

Query: 247 MTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKATKA 280
           +     +                                         +  ++K    K 
Sbjct: 184 INTPKTKNSCREIPINKELLTMLKPLKKVINDDYYILTNDERPTEPRTYRNYYKRLMEKL 243

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337
            + K   HG+R   AT   + G     +    G   +    + Y     ++ +  I    
Sbjct: 244 DIPKLKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPNMEQKKRCISKVF 303

Query: 338 R 338
           +
Sbjct: 304 K 304


>gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1]
          Length = 350

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLARSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 104/364 (28%), Gaps = 46/364 (12%)

Query: 14  ERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G+        R   G+ I+  Y + + +       +           + ++   T
Sbjct: 9   RKRKDGRWEGRYIKARTPEGK-IQWGYVYGTVYAEVKRVLIQKKAEAG--FYNLKRTDLT 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE----- 124
            + L   +  S    ++  ++   +       ++          +    +   ++     
Sbjct: 66  FEALAEVWLHSQR-NAVKESTYAHYSYTLHKYLLPVLSKVPVTSLEESFLEQAMQQIIAP 124

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +    SSA + L+ +R + K+A     +     L V  PK   +   P +  + Q
Sbjct: 125 IDATHKPLGNSSARECLSMLRRICKYA-AHLRLIRPMELEVALPKAIDKISAPLSPAEQQ 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY---------SGLRCSDS-------------CRAGVQHLQ 218
           +   +  E   PR     L            GL+  D              CR    +  
Sbjct: 184 RLYQYVQENPTPRKIGLLLGLELGLRIGEICGLQWGDFDLKLGTLKINRTVCRISCGNSH 243

Query: 219 NNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
             +     +   +   + +P      +K L         F   N+ +      +    KA
Sbjct: 244 TKVVIQTPKTRTSRREIPIPKQLLIMLKKLRGCVSNAAWFLSGNESKPTEPRCYRKSIKA 303

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-ADRIRLG 332
              +A V +   H +R   AT    AG     L    G    +   + Y      R R  
Sbjct: 304 YLKQATVRQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRRE 363

Query: 333 IKNS 336
           +   
Sbjct: 364 MNRI 367


>gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 407

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 93/310 (30%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++ + L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTAAGCAYNTSAKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                            VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLGK 400


>gi|219853755|ref|YP_002470877.1| hypothetical protein CKR_0412 [Clostridium kluyveri NBRC 12016]
 gi|219567479|dbj|BAH05463.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 323

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 95/296 (32%), Gaps = 20/296 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRS 121
             T +    EY   +    L+ ++  ++  +        G        D + I +  +  
Sbjct: 22  KKTYQEAFKEYIAISKVRGLSEDTIKTYYYHNKYFCEFLGKNKNCGGLDVKTIESYVL-- 79

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
            ++ +    ++   +L ++  + K+ +++ Y+     +   + +++ + I    + +   
Sbjct: 80  FLQEKGMKGTTINSYLQNISPVLKYCMKKGYIFEYFNIPYVKVQQEHKEIFTEDELNTLL 139

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--TGTIITVEL 237
           Q  KS      +       L  +GLR S+     V +L      I            + +
Sbjct: 140 QPPKSKDFVSIRVYTCVWLLASTGLRASELRHLKVNNLNMIDRIITCNYTKNKKARYLPI 199

Query: 238 PDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
                ++L      +     +  F       ++ T           + G+ KS  H  R 
Sbjct: 200 SSSLYEVLDNYLNLRKGDGEDYLFPTVYGDILSRTSLQKGIVKYCHQRGIKKSGIHIYRH 259

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              T S +   +   L    G  T  Q   Y     R+   ++    I+  ++  +
Sbjct: 260 TFITRSVEKNVSPLILKNITGHATFKQLNNYYNS--RMSSMVEVIDNIAPQLNKKE 313


>gi|45597395|ref|NP_996675.1| integrase [Lactococcus phage phiLC3]
 gi|293033|gb|AAA32254.1| integrase [Lactococcus phage phiLC3]
          Length = 374

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 100/353 (28%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYTKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   +G+R S++       +  N  +IK ++T              
Sbjct: 182 NRLNPNYSSPTMLFIISITGMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +      +
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLE 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLKISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|323161906|gb|EFZ47780.1| phage integrase family protein [Escherichia coli E128010]
          Length = 281

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 84/272 (30%), Gaps = 25/272 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
            T   L  ++  SA++  L+  ++  +  +  +++   G      I  +HIR  ++ R  
Sbjct: 1   MTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGE 60

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + + A    +SM  ++ W   + YV  NPC  V + K K        KE          
Sbjct: 61  QSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKEYQAVLSVAP- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                 +A E       R SD      + + N+   I+  KTG              +  
Sbjct: 120 --LPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEK 177

Query: 248 TPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISAD 299
                       N    +     F+  +     +AG       + + H +          
Sbjct: 178 AKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL--------KA 229

Query: 300 AGATA-----HELMATYGWKTVDQAETYTKGA 326
            G +       +     G KT  Q   Y +  
Sbjct: 230 KGISDYEGSSRDKQLFSGHKTEGQVLIYDRKV 261


>gi|319945859|ref|ZP_08020109.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
 gi|319747924|gb|EFW00168.1| phage integrase family site-specific recombinase [Streptococcus
           australis ATCC 700641]
          Length = 423

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/389 (13%), Positives = 103/389 (26%), Gaps = 70/389 (17%)

Query: 27  KGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           K  G+++   +  P        Y+        + +          T+K L   +  S   
Sbjct: 36  KKTGKQVTTTISAPTLKALDRKYLETKRK-FEENDSTRKETLSVGTIKELSEFWYDSYKS 94

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQ------- 135
              + N+R     Y D  I+ K GD+    I +  I+  V+           +       
Sbjct: 95  WVSSDNTRNRVRGYLDTYILPKFGDYKIDSIESTEIQKWVDQLAEKARIEINKGKRKADK 154

Query: 136 --------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTKED 178
                    +  ++ +  + +    +  NP   V  P +                    +
Sbjct: 155 GKASDYGAVVHKLKDILDFGMVHFNLKNNPVKQVRIPPKPKSPQNRIQVLHEKDIAIWLN 214

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---- 234
                       + +L    LL S LR ++     V  L      I   KT         
Sbjct: 215 YLDTLPNSRANRRFKLICNTLLASALRINELLALEVDDLLFESSEINVNKTLMWRRGDKT 274

Query: 235 ---------------------VELPDGFMKLLAMTPIGKETFFINN------------DK 261
                                V +P   ++ L         +F  +              
Sbjct: 275 LGTKGKVICKNSAKTDSGNRKVPVPITIIQELKDFNNEMNNYFEKHGLPKSKLIFPTIYG 334

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             M           +  + G+     H  R   A++  ++GA   EL    G K++    
Sbjct: 335 NYMTDRNERATLIKRLKELGLPDYGFHLFRHTHASLMLNSGANWKELQERMGHKSISTTM 394

Query: 321 -TYTK-GADRIRLGIKN-SRRISSVVDSD 346
             Y +   +R    +     R+S +   +
Sbjct: 395 DIYAELDPNRKNEAVDILMERLSQIKGEN 423


>gi|296877324|ref|ZP_06901364.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431844|gb|EFH17651.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 423

 Score = 97.9 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 102/389 (26%), Gaps = 70/389 (17%)

Query: 27  KGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           K  G+++   +  P        Y+        + +          T+K L   +  S   
Sbjct: 36  KKTGKQVTTTISAPTLKALDRKYLETKRK-FEENDSTRKETLSVGTIKELSEFWYDSYKS 94

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQ------- 135
              + N+R     Y D  I+ K GD+    I +  ++  V+           +       
Sbjct: 95  WVSSDNTRNRVRGYLDTYILPKFGDYKIDSIESTEVQKWVDQLAEKARIEINKGKRKADK 154

Query: 136 --------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTKED 178
                    +  ++ +  + +    +  NP   V  P +                    +
Sbjct: 155 GKASDYGAVVHKLKDILDFGMVHFNLKNNPAKQVRIPPKPKAPQNRIQVLHEKDIAIWLN 214

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237
                       + +L    LL S LR ++     V  L      I   KT      +  
Sbjct: 215 YLDTLPNSRANRRFKLICNTLLASALRINELLALEVDDLLFESSEINVNKTLMWRRGDKT 274

Query: 238 ------------------------PDGFMKLLAMTPIGKETFFINN------------DK 261
                                   P   ++ L         +F  +              
Sbjct: 275 LGTKGKVICKNSAKTDSGNRKVSVPITIIQELKDFNNEMNNYFEKHGLPKSKLIFPTIYG 334

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             M           +  + G+     H  R   A++  ++GA   EL    G K++    
Sbjct: 335 NYMTDRNERATLIKRLKELGLPDYGFHLFRHTHASLMLNSGANWKELQERMGHKSISTTM 394

Query: 321 -TYTK-GADRIRLGIKN-SRRISSVVDSD 346
             Y +   +R    +     R+S +   +
Sbjct: 395 DIYAELDPNRKNEAVDILMERLSQIKGEN 423


>gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 338

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   HI + +E        P++   +L++
Sbjct: 55  SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 114

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                   ++G 
Sbjct: 115 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 174

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     +   +  +       K        +P G  K L    
Sbjct: 175 RDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 234

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                        +   F +   ++M+        + +  +AG+   + H +R+  A+  
Sbjct: 235 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEMFAPHDLRRTFASSM 294

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R++   +   
Sbjct: 295 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 335


>gi|290770043|gb|ADD61807.1| putative protein [uncultured organism]
          Length = 372

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 83/270 (30%), Gaps = 18/270 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E   + P           +
Sbjct: 100 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++  +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDCIESIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 220 LKRAFLFGCLTGLRKSDIKQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 277

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                                 K     AG+ K  + H  R    ++  + G     + A
Sbjct: 278 LGERCEGLIFDGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 337

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G K +   + Y+K A   R   +   +I
Sbjct: 338 YLGHKNITTTQIYSKMA--ARQMCEVVDKI 365


>gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii]
 gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii]
          Length = 333

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 85/270 (31%), Gaps = 32/270 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142
           + + ++  ++        +       ++ +   I+  ++        PS+   ++  ++ 
Sbjct: 46  NKSQSTIKTYTRCLKSFAQWLAMNGIQQTSESTIKLYMQWLENQGRQPSTIHLYIVVVKR 105

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFE 197
            FKW    + +  +   +VE  + + +  + + +    +           +G +      
Sbjct: 106 WFKWL-EAKRIYPDVAKNVENVRVRKDSPKSFFQAHQVKKILDTVDQTSEKGKRNYALLV 164

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGK 252
            L   GLR  ++ RA V +++ N   +     G     +            +L      +
Sbjct: 165 LLFTCGLRTIEASRARVDNIRLNGSQLVLYIHGKGHKTDDDYVPLPDKTYAVLCEYLSTR 224

Query: 253 ETFFINNDKQKM---------------NATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
                + +  K                +    S   K+   KAG +    +AH  R  +A
Sbjct: 225 GIKPKDFETCKQPLFTSTSNRSKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTAA 284

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T++   GA   E        +    E Y  
Sbjct: 285 TLALTNGADLRETQMLLRHSSPTTTEIYLH 314


>gi|326381298|ref|ZP_08202992.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199545|gb|EGD56725.1| phage integrase family protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 385

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 123/375 (32%), Gaps = 53/375 (14%)

Query: 1   MTPSLRLPPF---VTKERTRHGKIIYYFR-----KGHGRRIRLPYPH-ESTFIPAYMSAL 51
           MT   +       +T+ + ++G++ Y FR     K  G R R  + +       A    +
Sbjct: 1   MTEENKRTRRAEPITRRKAKNGRVSYEFRADVGVKPDGSRDRRRFTYPTKKEAQAEYRRI 60

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
           T       Y+   R    T+   +  +        +  N+  ++      I+R  G  + 
Sbjct: 61  TTEVAAGRYVGRSR---VTVAEHVEAWLAGK--RDVRPNTLRNYTDAAKPIVRDLGGLEL 115

Query: 112 RKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +++T  HI          + R ++  SA   L  +R + K A RQ  ++ +P   VE PK
Sbjct: 116 QRLTKAHIDKFLGGLTRRDGRPYSTDSARLVLAVLRQVTKDAHRQGIISRDPSEFVEPPK 175

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI 224
            K            ++   F    ++ R+A  +LL   GLR S+      + +  +  +I
Sbjct: 176 AKRVAAENLDVWTREEANLFRKHTAEDRMAACWLLTLCGLRRSEVLGLRWRDVDLDAGTI 235

Query: 225 KTQKTGTIITVELPD-------------------------------GFMKLLAMTPIGKE 253
              +    +T    D                                    +        
Sbjct: 236 TVTQGRVEVTATFIDTAEPKTARGRRALPISGEIIDALAALRRLQAAERAEMGCDYAETG 295

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
              +  D        +S  F+  A+ AGV   +   VR  S ++  DAG     + A +G
Sbjct: 296 LVAVEPDGTPTLPRTYSDRFRRLASAAGVPPITLRNVRHTSVSVMLDAGVPPTVVAAWHG 355

Query: 313 WKTVDQAETYTKGAD 327
                    Y +  D
Sbjct: 356 HDPRMTVSVYGRTYD 370


>gi|314936915|ref|ZP_07844262.1| integrase [Staphylococcus hominis subsp. hominis C80]
 gi|313655534|gb|EFS19279.1| integrase [Staphylococcus hominis subsp. hominis C80]
          Length = 371

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 93/361 (25%), Gaps = 43/361 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M   L+L   + K+  R     YYFR       G R  +          A  +       
Sbjct: 4   MQHDLKLSHNIYKDAKRG---TYYFRIKYYEKTGERKEIKRTGYKQRKEAVKACNAYMDE 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
                   +        L+ EY +       A + +       + ++      D   +TT
Sbjct: 61  IEGIGKINQLP---FDELVQEYVEWYSARRKASSLKSLKTHTNNHLLPFFKSMDVFNMTT 117

Query: 117 KHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           + I      +    H+     +    +  +   A++   +  N    V   + +T+    
Sbjct: 118 QDIMKFQNKKMKEAHSGEYLKKMHVFLVSILNHAMKYHDLKQNVASLVGNFEIETQKRLN 177

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           +   +            Q ++ F+ L  SG R  +        +      I   KT    
Sbjct: 178 YWTLEQFNQFYNMLPNLQQKVFFKLLFMSGARKGEIRALTWDDVNFEDDYIHINKTDYHG 237

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWF 273
                          +   + D   + L                    +  + +    WF
Sbjct: 238 IVTAPKTKASIRDIYLPAHMMDDLQEYLNWYKDNNIYKSNYVLFGTFFKAFSESAIDRWF 297

Query: 274 KAKATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYT 323
                +                H +R   A++  + GA+   +    G  +  +    Y 
Sbjct: 298 TGTLKQLDETLPDGETFPRIVIHELRHSHASMLVNHGASPMIIAQRLGHSSTEEVTSRYG 357

Query: 324 K 324
            
Sbjct: 358 H 358


>gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
 gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109]
          Length = 352

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 91/315 (28%), Gaps = 53/315 (16%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHT 129
           L+ +Y     +    + N+  +++      +   G  D    T    + +         +
Sbjct: 35  LLEDYVDYLRYNLGRSENTIRAYQRDLTDSLE--GLRDIESFTLDHARDVLGYAADDGAS 92

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----------- 178
            S   +  +SM+   K+  ++E +  NP  ++  PK +    R    +            
Sbjct: 93  RSRLSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTLPRVLRSDQARTLLDGLKRD 152

Query: 179 ----------------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                                  +  +   +   +     E L  +G+R  ++    V+ 
Sbjct: 153 ALEPPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAELLFGTGIRVGEAEAIDVED 212

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINND------------KQK 263
                + ++          V       + L      +       +             Q+
Sbjct: 213 FDRANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHRGELAQPANPALLVGVRGGRLNQR 272

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                     +     A  + S HG R  +AT   + GA    +    G  +++  + YT
Sbjct: 273 EIRRVIDQAIRRHPELAVGHMSPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYT 332

Query: 324 KG-ADRIRLGIKNSR 337
              A+R++   + + 
Sbjct: 333 HVGAERLKAAYRQAH 347


>gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 243

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 23/241 (9%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------- 175
           E RK+ P S       M V F + + +  +  +  +   +  ++ + ++  T        
Sbjct: 5   EERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTLKTLTDEEVNSLI 64

Query: 176 -KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                Q+ ++      +    F  LL +G+R  + C    + +  +    + +  G    
Sbjct: 65  AWLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQ--RAKIFGKARK 122

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN 283
           VE      KLL+   + KE    +  K                      FK    + G+ 
Sbjct: 123 VETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKGERLGENGTKQVFKRLTNETGIK 182

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSV 342
            S H +R   A    ++G     L       ++   E Y    ++ ++   +    ++++
Sbjct: 183 VSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNPLNNL 242

Query: 343 V 343
           +
Sbjct: 243 I 243


>gi|225163642|ref|ZP_03725947.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
 gi|224801716|gb|EEG20007.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium
           TAV2]
          Length = 429

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 104/330 (31%), Gaps = 24/330 (7%)

Query: 17  RHGKI------IYYFRKGHGRR-IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R+GK        Y   +G   R + L  P            +     ++E I +PR +  
Sbjct: 10  RNGKRARLYYGRYALNRGDKPRTVALGTPDVRVARKRLRDIIVEKQREQEGIIAPRTERD 69

Query: 70  T----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T    L  L++E+               +     ++I+ ++G      I          +
Sbjct: 70  TAALPLTTLLTEFVADLQARKRTPRHIRTTRLCIEKILNETGWKRLSDIRADQFVKWRST 129

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K    +  ++  S+ +   W VR + +A NP   V   + + + +R       ++    
Sbjct: 130 LKLAAKTVREYQASICIFLNWLVRLDRIARNPLAKVPHVETRGQKVRDTRAFTPEELARL 189

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFM 242
           +       L + FL Y+G+R  ++       L       + +   +T   +T        
Sbjct: 190 FEVSGPRSLLYRFLAYTGIRRGEAQALVWGDLHLTGEQPYLLVRDETTKDMTKRPLPLHP 249

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGVRKFSA 294
           +L A+           +         F +  +     AG+ K          H  RK   
Sbjct: 250 RLAALLRAAAPQDAKADAPVFPEFPHFRVLDRDI-KAAGIPKRDGLNRTVAFHSFRKTFQ 308

Query: 295 TISADAGATAHELMATYGWKTVD-QAETYT 323
           T+   AG          G    +  A+ YT
Sbjct: 309 TMGVRAGINQRAAQEFLGHSDANLTAKIYT 338


>gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
 gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135]
 gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E   + P           +
Sbjct: 100 FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 220 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 277

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                                 K     AG+ K  + H  R    ++  + G     + A
Sbjct: 278 LGERHEGLIFDGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 337

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 338 YLGHKNITTTQIYSKMAAQQ 357


>gi|71911280|ref|YP_282830.1| integrase [Streptococcus pyogenes phage 5005.3]
 gi|71854062|gb|AAZ52085.1| phi5005.3 integrase [Streptococcus pyogenes phage 5005.3]
          Length = 359

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/350 (10%), Positives = 92/350 (26%), Gaps = 27/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++     +    +R   G++         T   A ++A                   T+
Sbjct: 4   YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +        +   +  ++   F  I    G    + IT    +  +       +
Sbjct: 62  LDYNRRWADIYKRPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGAKVA 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184
             +  +F   ++   K A+R   +  N          +  K ++E     ++       +
Sbjct: 122 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLAFIKVA 181

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229
                    L    +  +GLR ++      + +                       T+  
Sbjct: 182 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFENGYIDINKTFDYSISQNFGPTKNE 241

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +I  V +    +++L                    +   +   K      G N + H +
Sbjct: 242 QSIRKVPIDKNSLEILRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 299

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
           R   A+     G     +    G + ++   + Y    + ++    +  +
Sbjct: 300 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 349


>gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
 gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           BMB171]
          Length = 301

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 93/282 (32%), Gaps = 25/282 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           L  L+ E+       + +  +  +++     +   +       D   I   HI+  V+  
Sbjct: 2   LDNLLKEFIFELKIKNYSDRTVDTYKYNVGLFITYLNEHHEVDDIEDIAPFHIKKFVQHQ 61

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DM 179
                  +     + S+R  FK+ V +EY+ +N    ++  K  TE I+ +T +     +
Sbjct: 62  IGLGKKANYINTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKMI 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------NIFSIKTQKT 229
             +       ++ ++     + +G+R S+      + + +                    
Sbjct: 122 DSYDFKTYLNARNKVIMAMFVDTGIRMSELINLQSEWVYDTNIRIKGKGSKWRFAPISLM 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKS 285
                +       K      +  + +F++   + +   Q     K    +A     +  S
Sbjct: 182 LKKYMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRADVRKDIRCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H +R ++   +   G   +      G + +   + Y +G +
Sbjct: 242 PHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYLQGLE 283


>gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6]
 gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            ++ +++  +  SL  ++R +  S  + +     D  +  +T + + S     +      
Sbjct: 108 FLTFFKEEVNNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHL 167

Query: 134 IQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L ++      ++            + K         + E++ + +    EG
Sbjct: 168 NTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEG 227

Query: 190 SQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +L     AF F  Y+GLR SD       ++               +   +       
Sbjct: 228 KFTKLQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQET--WLIYKSVKTGIDVRLPLY 285

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L                +N   +  + +  +    A A  A ++K  S H  R  +AT+ 
Sbjct: 286 LLFEGKGLRVLENYKDDLNGFFRLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +GA    +    G K+V   + Y    D
Sbjct: 346 IYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|46200178|ref|YP_005845.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
 gi|46197806|gb|AAS82218.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB27]
          Length = 392

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 108/375 (28%), Gaps = 45/375 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M+                GK +           R      H  T   A   AL      +
Sbjct: 1   MSKRRGKGGGSVFYHEGKGKWVAQLTWIDPATGRKVKREKHCETRKEA-ERALADMVAAQ 59

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDF 109
                      T +    +Y K      L  NS    +      +            G  
Sbjct: 60  AKGLLTDPSRLTTRDFALDYLKRLEREGLRPNSIRLAQEELAHALPSLKDPKAHDPLGRM 119

Query: 110 DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
             +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA NP  +V     
Sbjct: 120 RLQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLP 179

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           K E      +          +E S+ +   L    +L +GLR  ++     + +      
Sbjct: 180 KGEKTARALEPQEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQWRDIDLEAGE 239

Query: 224 IKTQKTG------------------------TIITVELPDGFMKLLAMTPIGKETFFI-N 258
           +   ++                           + + L     +LL      +       
Sbjct: 240 LTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLV 299

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              + ++   F+ + +  A +AG+ +   H +R   AT++   G     +    G  +  
Sbjct: 300 GGVKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPT 359

Query: 318 -QAETYTKGADRIRL 331
                Y    +  R 
Sbjct: 360 ITLNVYRHLLEEERR 374


>gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM
           10152]
 gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152]
          Length = 307

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 93/307 (30%), Gaps = 38/307 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           L  L++EY +      + + ++  ++     +    +  +S D    ++    +RS +  
Sbjct: 8   LTALLAEYGRHLRLGQNRSAHTVRAYVGDARALLTHLYTRSPDAAIGELDLPLLRSWLAD 67

Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   ++  +  +++R    W      +  +P L +  PK          ++     
Sbjct: 68  LAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPKAHRTLPAVLARQQAVAA 127

Query: 183 KSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                 G         + RL  E L  +G+R S+ C   +  +      ++    G    
Sbjct: 128 MDAAESGARQEDPMALRDRLIVEMLYATGIRVSELCGLDIDDVDRERRLVRVLGKGNKER 187

Query: 235 VELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAG-- 281
                G   L     + +                    ++++  Q         +     
Sbjct: 188 SVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLDQRQARTVVHEVVSAIPGA 247

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            +   HG+R  +AT   + GA    +    G  ++   + YT  +           R+  
Sbjct: 248 PDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVS---------IERLKK 298

Query: 342 VVDSDDP 348
           V D   P
Sbjct: 299 VHDQAHP 305


>gi|26988264|ref|NP_743689.1| phage integrase, putative [Pseudomonas putida KT2440]
 gi|24983008|gb|AAN67153.1|AE016344_3 phage integrase, putative [Pseudomonas putida KT2440]
          Length = 368

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 44/361 (12%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALT 52
           M P  R      LPP + ++   R+G   Y +R     R+  L          A  + + 
Sbjct: 1   MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMA 60

Query: 53  GSTPKREYINS----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                          P          I EY        L+ +S  +     +++ +  G+
Sbjct: 61  LQVAPPTLSARIAPEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGE 120

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              R +TT  I   + +  ++     A    + +R LF  A+ + +V  NP  + +  + 
Sbjct: 121 RGIRTLTTMDIADYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARV 180

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           K +  R   +     ++         + A E  L +G R  D      +   +    +  
Sbjct: 181 KIKRQRLTLELWKAIYEEAAQ--PWLKRAMELALITGQRREDIASFVFRDEVDGFLQVVQ 238

Query: 227 QKTGTI--------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            KTG                                 L+            +       +
Sbjct: 239 SKTGARLRISTSVTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTIS 298

Query: 267 TQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +F+      A K G++      + H  R  +A +  + G    +     G ++    + 
Sbjct: 299 KEFAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDL 355

Query: 322 Y 322
           Y
Sbjct: 356 Y 356


>gi|27468427|ref|NP_765064.1| integrase [Staphylococcus epidermidis ATCC 12228]
 gi|27315974|gb|AAO05108.1|AE016749_54 integrase [Staphylococcus epidermidis ATCC 12228]
          Length = 359

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 89/335 (26%), Gaps = 29/335 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             + G    Y     G+R R               A+                  T    
Sbjct: 6   VYKRGNTFQYDFYFKGKRYRKSGYLTK---RDAQIAMNIKLNDLLEGYD-TDNNLTFVDF 61

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT------------TKHIRSG 122
              + +      +   S   + +         G+     I               H  + 
Sbjct: 62  YYRWLEITKLDIINDTSYKRYITAIKAFKDCFGNKLISDIDSLSYQKFLKDYGRGHFLNN 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDM 179
            + R  T ++  +    ++  F+ AV Q Y+  NP  + +       ++   +  +   M
Sbjct: 122 GQLRPRTSNTVSKMNNCLKQAFESAVEQGYIKKNPAKNAKPFGLKSSQSIDDKFMSITQM 181

Query: 180 QQFKSFWSEGSQP-RLAFEFLLYSG-------LRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    +  +      L    L+ +G           +        +  N    K  K   
Sbjct: 182 KNLIHYVKKNDALSHLCIYILIITGSRFKPVQHLRYEDLNFKKSCIHLNDTKNKYSKRNV 241

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
            + ++  +    ++   PI +  +  +N    ++ +  +        K   +K +   +R
Sbjct: 242 KVRIKDLEYIQSVINKHPINQNGYIFHNFINFISYSAINDVLVRFCLKYKYDKYTLKSLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               +     G +   +    G   +    + Y+ 
Sbjct: 302 HTHCSYLLAKGISIQYISKRLGHADIHTTLKIYSH 336


>gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2]
 gi|19746443|ref|NP_607579.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3]
 gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2]
 gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2]
 gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage
           315.3]
 gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2]
 gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 10750.3]
 gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo]
 gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 380

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 107/377 (28%), Gaps = 52/377 (13%)

Query: 11  VTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPRK 66
           +  E T +GK  +         G    +    E     AY +A      K  E I   + 
Sbjct: 1   MWIEETDNGKFKFRENYKDPYTGTWKPVSVTMEKDNSRAYKAARKILEQKITEKIAQLKA 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
                  L+ E+        L  +S  S     ++I    G       I  K++++ +++
Sbjct: 61  SELLFTELLDEWWAFYK-KELKRSSVASLRGNIEEIRETFGIGVKVVNIDPKYVQNYLDN 119

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----- 180
              + +   +  + + + F +AV  + +  NP    + P+ K         E+       
Sbjct: 120 LDCSRNKKERNKSMLNLAFDYAVGLDIIQDNPARRAKLPRVKKTLEDWKKAEEKYLEEDE 179

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
                +         +  L  EF+  +G R  ++      + ++    ++   T      
Sbjct: 180 IKPLLKELYRRPSTYRLGLLAEFISLNGCRIGEAVSIEPCNYESKSRILQLHGTFDHTEG 239

Query: 233 ---------------ITVELPDGFMKLLA-------------MTPIGKETFFINNDKQKM 264
                              +    +++L                       F   +   +
Sbjct: 240 YRNGEKTAPKTLASYRETIMTSRELEILQELEFMNELEKNTNHRYRDMGYLFTTKNGVPI 299

Query: 265 NATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
               F++  K    +         ++H  R    +  A+       +M   G        
Sbjct: 300 QTNSFNLALKKANERLEDPITKKLTSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTA 359

Query: 320 ETYTKGADRIRLGIKNS 336
           + YT    +++  + + 
Sbjct: 360 QIYTHVTKKMKSSVADI 376


>gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
 gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972]
          Length = 329

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 89/303 (29%), Gaps = 59/303 (19%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
           +       A  +  S+  +  Q IR  G+    K+  + + + +     +     S+   
Sbjct: 11  EFMQVRHYARKTIESYLYWVVQYIRFHGNQHPNKLGNRDVEAFLSDLVVSKQVAASTQNL 70

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++  L+K  +++           ++   + +     T  ++++  +     +   L 
Sbjct: 71  ALNALVFLYKEFLKKPLDIDLRFRHSKK---QRKLPVVLTPTEIKKLFAAIPAQT--LLP 125

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPI--- 250
           ++ +  SGLR  ++ R  V+ +  +  +I+  ++       V L      LL        
Sbjct: 126 YQLMYGSGLRLMETIRLRVKDIDFDYGAIRGWQSKGGKSRVVTLAKELHPLLRFQIETVK 185

Query: 251 -------------------------------------------GKETFFINNDKQKMNAT 267
                                                       +        +  ++ T
Sbjct: 186 HLYTQDQLNPNYDGVQMPNRLAEKYPSASKSLEWQFLFPAKQLCRYGDKPGWYRHHLHET 245

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                       A +    S H +R   AT   +AGA    +    G   V   + YT  
Sbjct: 246 TLQKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305

Query: 326 ADR 328
            +R
Sbjct: 306 IER 308


>gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 320

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 78/271 (28%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     +   +T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF   +    +        +   + +              +       E    G + R  
Sbjct: 99  LFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKGLRDRAL 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDG 240
              LLY GLR  ++    V  +Q+       +  G                 I   L   
Sbjct: 159 LAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIHQYLESS 218

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
              L                   + A        A A  AG+       HG+R  +AT +
Sbjct: 219 EHHLTDRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKMAGIEVAGLGVHGLRATAATNA 278

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +  A   ++ A  G   +   + Y +  +R
Sbjct: 279 LEHEADIAKVQAWLGHANISTTKIYDRRENR 309


>gi|222151150|ref|YP_002560304.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120273|dbj|BAH17608.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 374

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/372 (10%), Positives = 98/372 (26%), Gaps = 52/372 (13%)

Query: 17  RHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + G   Y  R       G+ +          +    Y      +  +    +        
Sbjct: 6   KRGNK-YRVRIFYKNEFGNKKSHSKSGFRSKSEAREYAKIAEANLKEIIKTD----HNII 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L   + EY +     S + ++  S     D+I         + +T    +  +++    P
Sbjct: 61  LTEYVKEYIEKFIIPSYSASTIDSNYYALDKIKDYFDTKLLKNVTFSDYQLFIDTLIKHP 120

Query: 131 SSAIQFLT-------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S             +M   ++  + ++       +  +      E      ++     +
Sbjct: 121 YSTSTIKKCHGLMSKAMITAYRDGLIKQNFTEYVEMKYKEVNMPKEKKYLPLEDIKSFLE 180

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
              +  +     F  ++ +GLR  ++C    + +     ++   K+              
Sbjct: 181 HVRNRSTIQYYLFRLIIETGLRVGEACALTYEDIDTENNTLNVTKSYDQKRKVLGPTKTG 240

Query: 233 --ITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKA 275
               V +     K +                         F++     +  +        
Sbjct: 241 NNRIVHITQSLAKEINNLIQIQNAFKVVNEKVYNNKHNFIFVDELGNPIPRSTIHNTMVH 300

Query: 276 KATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
              +    G + S H +R   A++   A      + +  G K  +  E  YT   D+   
Sbjct: 301 ITERMYGEGNHLSIHELRHTHASLLFQADVPLKAISSRLGHKDTNVTERVYTHLTDKYH- 359

Query: 332 GIKNSRRISSVV 343
             +      + +
Sbjct: 360 -EQALHDFENYI 370


>gi|29376554|ref|NP_815708.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227555403|ref|ZP_03985450.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|29344018|gb|AAO81778.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227175446|gb|EEI56418.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|315167585|gb|EFU11602.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 382

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 118/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS----- 63
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  VENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAVKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +      +E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAVLENEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM
           15897]
          Length = 417

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 75/279 (26%), Gaps = 31/279 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTP 130
            ++Y        L+ +++  +       +          ++   +    +  +     + 
Sbjct: 120 FNDYLDHTE---LSKSTKKHYIRISLIFLDYLNQKGITDVSYIDLSICNDYIRTFTGMSF 176

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFW-- 186
            +  Q +  +R   ++   +  +  +    +  P      +    WT++++++       
Sbjct: 177 KTIEQHICGLRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEIKKLLQAIDR 236

Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIITVELP 238
               G +           GLR SD       +          I     +     I   + 
Sbjct: 237 NSPIGKRDYAMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKTKKPLTLPIPDAVG 296

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVN------KSA 286
              +  +               K         +    S        KA +       +  
Sbjct: 297 WAVIDYIKNGRPKYYESKFIFLKHMPPFGSLSDENHLSDRIHFYMKKAKIPLNKNCHRGF 356

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H +R  SA++  DAG     + +  G  + D    Y K 
Sbjct: 357 HSLRHTSASMLLDAGVELPVITSILGHSSTDITSIYLKT 395


>gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160]
 gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8]
 gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 404

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 110/402 (27%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           + +     + S       +  +R +FK+A +   +     L      +K +    +  + 
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNEFQAKR 182

Query: 178 --------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                                     ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVVTGAFGVKETTKTSKSYRTIGLTAQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             NDK               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNDKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D  ++      ++  +
Sbjct: 363 INLKAIQERVGHSDYKTTLEIYTHVTD--KMAKDMMNKLEGI 402


>gi|260900256|ref|ZP_05908651.1| phage integrase family protein [Vibrio parahaemolyticus AQ4037]
 gi|308107542|gb|EFO45082.1| phage integrase family protein [Vibrio parahaemolyticus AQ4037]
          Length = 411

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 106/361 (29%), Gaps = 44/361 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG---HGRRIRLPY---------PHESTFIPAYMSALTGS 54
           LP  V     + G   +  R      G++  +               T        + G 
Sbjct: 39  LPTGVRCLVGKSGGKRFLLRYTSPVTGKKASIGLGKHPETDLATLRKTAKEYRQQIIEGV 98

Query: 55  TPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            PK E  N   +K  TL+    E Y   A       + +     +  ++ +         
Sbjct: 99  DPKLERDNQTAEKTMTLERFFDEVYLPLAKQKR---SWKDDAARF--RLAKSIHHISIHD 153

Query: 114 ITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSV 161
           +T   I       +         + P+S  + L  ++ + + A +      +A    L  
Sbjct: 154 LTAADIIKVQMEMQNAVTIKGKPYAPASINRVLALLKTINRQAYKLMDAPLIADKVSLLK 213

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           E   R         KE +    +   +     LA      +G R  +        +    
Sbjct: 214 EDNVRTGYLSESQLKEFIGHALNHEDKSIGAYLALL--FLTGARDKELRLRLKSDVNWED 271

Query: 222 FS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKAT 278
            +  I   K G+   + L D  +++L   P      ++   ++K          FKA   
Sbjct: 272 KTLTIPHTKNGSSHVLFLSDYMLEILRSVPHVANNPYLFPGRKKGKPVGQPRHAFKAIKA 331

Query: 279 KAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
           K G+          + H  R    ++ A  G + H++        +     Y+K    R 
Sbjct: 332 KMGLPDIPGDKANLTLHSARHTVGSLLASQGVSLHDIAKQLNHADLSSTRRYSKLTVGRR 391

Query: 330 R 330
           R
Sbjct: 392 R 392


>gi|238923034|ref|YP_002936547.1| hypothetical protein EUBREC_0624 [Eubacterium rectale ATCC 33656]
 gi|238874706|gb|ACR74413.1| Hypothetical protein EUBREC_0624 [Eubacterium rectale ATCC 33656]
          Length = 361

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 91/333 (27%), Gaps = 37/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y    G  ++              +  A          +          +  +  Y 
Sbjct: 15  RTYYKDWTGVRKQKTKRGFKRKCDAQEWERAF--------KLKENLSLDMYFEDFVDLYL 66

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---------KHT 129
                  +  N+ ++ +     +I+        ++I    IR    +           ++
Sbjct: 67  NDIKSR-IKYNTWLTKKHIVEKKILPYFSKKKLQEIKPSDIRQWQNTMMNYRNKQGEGYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSE 188
                     +  +   AV    +  N         ++       WTKE+  +F    ++
Sbjct: 126 QVYLKTIHNQLSAILNHAVNFYDLKSNAARKAGSMGKERTKEMLFWTKEEYMKFIEAVAD 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
                 AFE L + G+R  +              +I+  K+                   
Sbjct: 186 KPISFYAFEILYWCGVRMGELLALTPADFDFQACTIRINKSYQRLEGKDIITDPKTTKRN 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + +P+   + L            N+   +++ +            +GV +   H +R 
Sbjct: 246 RMITMPEFLSEELESYIGMLYGLNENDRIFQISKSYLHHEMDRGVKLSGVKRIRIHDLRH 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++  + G +A  +    G ++V+    Y  
Sbjct: 306 SHVSLLINMGYSAVAIGERVGHESVEITYRYAH 338


>gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 389

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 116/388 (29%), Gaps = 51/388 (13%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ P  +  ++  +G    Y   ++ G      L          A   A   +      
Sbjct: 6   KVKEPVRIRTKKLANGNESIYLDLYKDGDRVYEFLKLYLIPEKSKADKEANRKTLELANA 65

Query: 61  INSPR-----------KKPTTLKWL-ISEYRKSAHWGSLAVN-SRISFESYF----DQII 103
           I + R           K  TT   + + ++        LA + ++ S+          + 
Sbjct: 66  IKAKRIVELQNNEHGFKTNTTRSKMNLIQFVLHLADEQLAKSGNKRSYYYTLHSLAKHLE 125

Query: 104 RKSGDF-DYRKITTKHIRSGVESRKHTPS---------------SAIQFLTSMRVLFKWA 147
             +GD   + K+ T+ ++  +   +   +               S        +  F W 
Sbjct: 126 AYAGDKITFTKVNTEFVKGFIAYLRTAMNFNYENSEKKSKYEVLSQNTQHNLYKK-FAWV 184

Query: 148 VRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +R+   A    ++        ++PK +       T E++++  +   E    + AF F  
Sbjct: 185 IRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDMLKCAFIFCC 244

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             GLR SD  +     L  +         +       E      + L   P    +    
Sbjct: 245 LVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLPERIGSGDEK 304

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
             K   N        K   T AG+ K  + H  R  +AT++   G     +    G   +
Sbjct: 305 IFKLPKNDNSNRK-LKHWCTLAGITKNVTFHVARHTAATLNLSLGVPIETVSKLLGHTKI 363

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
              + Y K  D  +       +   V D
Sbjct: 364 STTQIYAKVIDANKKA--AVHKQDGVFD 389


>gi|167755883|ref|ZP_02428010.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|237734851|ref|ZP_04565332.1| integrase [Mollicutes bacterium D7]
 gi|167704822|gb|EDS19401.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402]
 gi|229382179|gb|EEO32270.1| integrase [Coprobacillus sp. D7]
          Length = 309

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 83/311 (26%), Gaps = 41/311 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVN--SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           K    K + +E+        L+V   +   +    D Q+  +  D+   +     I +  
Sbjct: 2   KTKKFKEISNEWI---ELKKLSVKYPTIAKYRVVIDTQLAHQFNDYTMEQFNEDIIIAYF 58

Query: 124 ESRKHTPSSAIQFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  + A   L      +R +  ++ ++          ++  K++ +       + +
Sbjct: 59  NKLSTKENYANSTLLSIRYVLRAIINYSHQKYKTNNCSFELIKIAKKQRQINTLSNSQKI 118

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                 ++      +A    LY+GLR  + C    + +      I   KT   +  +   
Sbjct: 119 NLSNYCFNNFQPISIAVAISLYTGLRIGEICALKWEDINFEDNYIYVYKTVERLKSKEDT 178

Query: 240 GFMKLLA-----------------------------MTPIGKETFFINNDKQKMNATQFS 270
           G    L                                      F I  + +  +     
Sbjct: 179 GNKTALMILNPKTSSSKRIVPIPLFLNEFLVNYKSRYQIEDNNVFIITGNNKIPDPRTTQ 238

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DR 328
             F     +   N + H +R   AT           L    G   V      Y   + + 
Sbjct: 239 YRFNKLCKQFDFNTNFHTLRHSYATNCVMNEVDTKSLSEMLGHSNVGTTLNLYVHSSLEF 298

Query: 329 IRLGIKNSRRI 339
            +  I    R+
Sbjct: 299 KKKQINKISRL 309


>gi|158317286|ref|YP_001509794.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112691|gb|ABW14888.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 426

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/395 (12%), Positives = 103/395 (26%), Gaps = 70/395 (17%)

Query: 14  ERTRHGKIIYYFR--KGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +   G+           G+R R  L     +       +           +   +    
Sbjct: 16  YKDSSGRWRATVDLGWKDGKRQRKYLSGKTRTEVAEKLRALRREQEDGVAVVTGVKL--L 73

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  ++ +  +     +  ++  ++  Y   +I+   G     ++T +H+ +     + 
Sbjct: 74  TLEEWLTFWLDTIAARKVRPSTLATYRGYVRNRIVPALGAVRLDRLTPEHLEAFYHRCEK 133

Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +A   L     +    K A R+  VA N    V+ P    + IRP T  D +     
Sbjct: 134 EGLAAATVLQMHRIVSRALKVAHRRGRVARNVATLVDPPSVDRDEIRPLTASDARAVLDA 193

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDGFM 242
            ++G +    +   L  GLR  ++       ++ +         Q               
Sbjct: 194 -AKGQRNSARWSVALALGLRQGEALGLAWDAVKLDAAPATLTVRQALQRRRWEHGCTDPK 252

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW------------------------------ 272
                    + T       +  +                                     
Sbjct: 253 TCGTARRCPRRTGGGLVIVRPKSRAGRRTIVIPENLAASLRAHRSAQRAERQAADGEWVN 312

Query: 273 ----------------------FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                                 ++   ++AGV     H  R   A++          +M 
Sbjct: 313 EHELVFVQPNGRPLDPRADHRAWQDLLSQAGVRAARLHDARHTMASLLLAQKVHPRVVME 372

Query: 310 TYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
             G   +     TY+  A    L    + R+ S +
Sbjct: 373 IMGHSQISLTLGTYSHVAPE--LSTDAADRMGSAL 405


>gi|330962790|gb|EGH63050.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 404

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/383 (10%), Positives = 84/383 (21%), Gaps = 60/383 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKREYI 61
           P +       G + Y       R   L      T   A   A            P     
Sbjct: 28  PGLFIRVQPSGHMAYMVSWARNRERSLGRVGTLTLAQARTEAARYLADAHEHGEPLAVTR 87

Query: 62  NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTK 117
                   +L+  I + Y       +        +      +              IT +
Sbjct: 88  GRRGTATPSLREFIDDTYLAWFKAHN------KGYAKTLHTLNNNFESIMSQRLDTITGR 141

Query: 118 HI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--------- 165
            +   R+   +  + PS+  + + ++  +   AV  EY+  +P   ++  K         
Sbjct: 142 DLESLRTTWLTAGNKPSTVNRKMGTISGVLSRAVDWEYLPSSPLDKIKPLKVDTKGQVRY 201

Query: 166 ----RKTEGIRPWTKEDMQQFKSFWSEG--------------------SQPRLAFEFLLY 201
                K          + +      S                         +      L 
Sbjct: 202 LSKEEKKNLRNALEVREHRACLERDSANQWRKDRGKVPLPDLKELAFTDHLKPMVLVSLN 261

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFI 257
           +G+R  +        +     +I              + +     + L            
Sbjct: 262 TGMRRGELFSLTWPMVNFQSKTITVCGDTAKTSETRHIPMNAEAFQTLKSWKEQSADSVF 321

Query: 258 NNDKQKMNATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                +          +      A +     H +R   A+    AG   + +    G   
Sbjct: 322 VFPGLEGGRMGDVKSAWLRLLKDAHIVGFRWHDMRHDFASRLVMAGVPLNTVRDLLGHTD 381

Query: 316 VDQAETYTKGA-DRIRLGIKNSR 337
           +     Y   A D     ++   
Sbjct: 382 IKMTLRYAHLAPDVKAAAVELIN 404


>gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 81/318 (25%), Gaps = 28/318 (8%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           R R         +  Y+    G       +++       L     E+ +      L+ ++
Sbjct: 77  RPRRGDAWTIRQLVRYLRDTGGVPVLLPEVDTS--AKGKLIDAFGEFLR--KERGLSAST 132

Query: 92  RISFESYFDQII-RKSGDFD--YRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKW 146
             ++       +  + G  D  +  +    +   +  R    S   A   +T++R   ++
Sbjct: 133 LTNYLPIIRGFLDEQFGGKDPGFDHLRVGDVHRFIVRRAQAGSLGRAKLAVTALRSFLRF 192

Query: 147 AVRQEYVAINPC------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             ++  +A +                         +  +         G +       L 
Sbjct: 193 LQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPAGRRDYAVLMLLA 252

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-KLLAMTPIGKETFFINN 259
             GLR  +     +  L  +   I     G  +        +   L              
Sbjct: 253 RLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTR 312

Query: 260 DKQKMNA---------TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                           +      +    +AG+    K AH +R   AT     GA+  E+
Sbjct: 313 RVFIRTRAPRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEI 372

Query: 308 MATYGWKTVDQAETYTKG 325
                    +  + Y K 
Sbjct: 373 GQLLRHSQPNTTQIYAKV 390


>gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9]
 gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275]
 gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9]
 gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica]
 gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein
           [Escherichia coli]
 gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae]
 gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Dublin]
          Length = 336

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   HI + +E        P++   +L++
Sbjct: 53  SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 112

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                   ++G 
Sbjct: 113 LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     +   +  +       K        +P G  K L    
Sbjct: 173 RDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 232

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                        +   F +   ++M+        + +  +AG+   + H +R+  A+  
Sbjct: 233 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEMFAPHDLRRTFASSM 292

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R++   +   
Sbjct: 293 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 333


>gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHI 119
            TL  L+  + +          A  +  ++        + I+   K  D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +           +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKRLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D      ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRPHVITRDLFLFACYTGTAYADVVSITRENLFWDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIEKYRDDTRATLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   +   + Y +   +     ++  R 
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKK--LFEDMDRF 398


>gi|288926026|ref|ZP_06419955.1| transposase [Prevotella buccae D17]
 gi|288337246|gb|EFC75603.1| transposase [Prevotella buccae D17]
          Length = 389

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 7/258 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           LI   ++      ++  +R   +   D + R         +T+ ++ +  E       S 
Sbjct: 118 LIEYMKEHIEAEDISEGTRKHKQCTLDALKRFGKIQKLTDLTSNNLVAFDEWLHDGTRSD 177

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                +   ++        +  + ++P   V+  + + +   P T+ ++Q+ +    +  
Sbjct: 178 VGIHTYHKHLKKYSHLLYIEGKIEVDPYTQVKFKRGECKEREPLTEAELQKLRKIKLDEK 237

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R  F F  Y+GL   D      +         K               F  +L   
Sbjct: 238 LDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGSRIKTASKFFTPILGPA 295

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
               + +     K         +     A K     + H  R   AT++         + 
Sbjct: 296 MEVLKKYKFVLPKISNQKANDFLHLIETALKLNKPLTFHVARHSFATLALAHDIPIENVS 355

Query: 309 ATYGWKTVDQAETYTKGA 326
              G K +   + Y K  
Sbjct: 356 RMLGHKNIRTTQIYAKVL 373


>gi|260662343|ref|ZP_05863238.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553034|gb|EEX25977.1| site-specific recombinase [Lactobacillus fermentum 28-3-CHN]
          Length = 394

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 109/348 (31%), Gaps = 37/348 (10%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G  R+ R       T        +       ++ +     P T K    +Y    +  
Sbjct: 49  RTGKRRQKRCSGFKTKTLAKEAYRKMVAQVEDEQFNS-----PITFKEFCGKYFFPWYKF 103

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
           ++   +    +   ++   +       KIT   ++         H   +     T +  +
Sbjct: 104 TVQEQTYEHRKGMVERSFNQFDSMKLSKITAFDVQKWQLGYLEDHANGTTRVAHTMLGKI 163

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-- 201
           F+ A+    +  NP   V   KR  + +  WTK+  Q+     S+ +        +L+  
Sbjct: 164 FERAILMSLMRENPAKIVGNVKRSQDEVEFWTKDQFQKVIDQTSKDTYTHRFDFIILWFL 223

Query: 202 --SGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFM 242
             +G+R  ++     + +                  NN    KT+   ++  + +    +
Sbjct: 224 FMTGMRSGEAKALTWKDVDLKAGTIDINKSLLYKSVNNYKLGKTKNRQSMRVISIDPQTI 283

Query: 243 KLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
             L      +     +          +N+T  +         A V   +AH +R   A++
Sbjct: 284 DYLEEWYEDQRLMTRSEFVLSQDGAPLNSTYINDIVHDYGDLAKVPTVTAHALRHSHASL 343

Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
               G     +    G K V    E Y       +  I+ S+R+  +V
Sbjct: 344 LISLGENPLVIRDRLGHKDVRTTLEIYGHLYP--KSDIEASKRLEGLV 389


>gi|116618784|ref|YP_819155.1| integrase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097631|gb|ABJ62782.1| Integrase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 348

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 94/319 (29%), Gaps = 21/319 (6%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           G  ++         T    +     G            +   + +   I  Y+       
Sbjct: 21  GGYKKKTKSGFKTKTEANQWAIKTEGSKIDVDIDFKPSQLLSSYISDWIDTYKTDV---- 76

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLF 144
            + ++ + +E     +     +    ++T    +  +      H+ +++ +    +  + 
Sbjct: 77  -SRSTHVGYEMTLKAVSEYFENTSLDQVTRHDAQKFLNEYGLSHSLATSQKVKGHLSGIL 135

Query: 145 KWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLY 201
           K AV    + +NP    +      K   ++     D ++F  +  E  +P          
Sbjct: 136 KDAVADGIIKVNPFERAKPHGTNAKDNSLKFLEYADFKRFIEYLKENHEPTHDIMLVASL 195

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           SG R  +        + N   +I       +  V+ P     +  +   G  T ++    
Sbjct: 196 SGARLGEVLALTPNDIGNRTINISKSYEERLNIVKEPKTPSSIRTVDVPGWLTDYLLTLS 255

Query: 262 QKMNAT-------QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
           +  N           +   +   T+  + K  + HG+R   A++    G     +    G
Sbjct: 256 KDNNERLFDRQQSSVNRELQRILTRLDIPKRITFHGLRHSHASMLISQGVAVEYISERLG 315

Query: 313 WKTVDQAET-YTKGADRIR 330
            K +   +  Y       R
Sbjct: 316 HKDISITQKTYLHLLQVKR 334


>gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 343

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 14/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE 124
           K TTL  L+  Y            +  +F    D+I+   G     + +     I   + 
Sbjct: 70  KETTLAELLQRYADILWDEGKHKYNVKAFIGELDEIL--LGKRFSTFSQEMLDGIVGALR 127

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            R ++ ++  + + ++  L + A +   +   P    ++ K          +E++   + 
Sbjct: 128 KRGNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEKAGRLRFLEADEEEVLFREI 187

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                    L   FL+ +G R  ++       +     +    K+G   TV L       
Sbjct: 188 ASRSELYLYL-SIFLVDTGARLGEAIDLKWNDIHEGRATFWVTKSGRSRTVPLTLRAKDA 246

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
           L          F   D+QK     F   + A    AG+    +   H +R   A+     
Sbjct: 247 LKKVADRSPGPFSRIDQQK-----FRAIWNAAKVDAGLGDEEDIVPHILRHTCASRLVRG 301

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G +T++    Y   A 
Sbjct: 302 GIDLRRVQMWLGHQTLEMTMRYAHLAS 328


>gi|9633585|ref|NP_050999.1| P38 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|6118033|gb|AAF03981.1|AF157835_38 P38 [Endosymbiont phage APSE-1]
          Length = 390

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 110/376 (29%), Gaps = 59/376 (15%)

Query: 17  RHGKIIY-YFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GKI Y  +    G+RI+      +                +   ++       T    
Sbjct: 5   KRGKIWYGSYTTPCGKRIKESLGTEDKKQAQELHDKRRAELWRIAKLDDF--PNVTFDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---------RSGVES 125
              + +          S    +      +        + +T   I         R     
Sbjct: 63  CLRWIEEKANKK----SLDDDKGRLGFWLLYFSGTRLKDMTEAKIYSAISKMKNRQEQLR 118

Query: 126 RKHTPSSAIQ--------------------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            K   +SA +                     L  ++ + K +  +++  I     ++ P 
Sbjct: 119 WKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLALLKSMMK-SAERDWKWIEKSPVIKVPS 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            + + IR    ++ ++  +   E    R   EF L +GLR S+        +        
Sbjct: 178 AREKRIRWLEPDEAERLINECPE--PLRSTVEFALATGLRRSNIINLAWSQIDMQRKVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------- 271
              +  K+G  I V L D    +L       + +   +      +               
Sbjct: 236 IEPENSKSGKAIGVALNDTACCILTRQLGNHQKWVFVHTMSAKRSDGSQTNSIRKMRVDS 295

Query: 272 --WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              ++A   +AG+     H +R   A+    +G     L    GW++V+    Y   A  
Sbjct: 296 NTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESVEMVRRYAHLASN 355

Query: 329 IRLGIKNSRRISSVVD 344
                +++++I  V D
Sbjct: 356 H--LTEHAKQIDGVFD 369


>gi|329768684|ref|ZP_08260168.1| hypothetical protein HMPREF0428_01865 [Gemella haemolysans M341]
 gi|328836398|gb|EGF86063.1| hypothetical protein HMPREF0428_01865 [Gemella haemolysans M341]
          Length = 341

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 102/330 (30%), Gaps = 15/330 (4%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +E T +GK  +   F+   G+  R+     +        A      +   I +P ++ 
Sbjct: 1   MYREITHNGKYRFVQSFKDRDGKNKRVSVVKNNKTRATEKEAFEELQDRINKILNPVQEA 60

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
             L +   +Y +      LA NS +++E+    +     +     +T       +   + 
Sbjct: 61  HNLGYYKEKYLEFKKPT-LAYNSYLAYETRIKVVDD---NERLEDVTKIKYDKMLMDMRK 116

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQF 182
            ++P++       +   F++  +      N  L  +  K +     + ++   K+++   
Sbjct: 117 DYSPNAIKLTCMVLNNFFQFIKKYYVSNFNVKLDFKFTKEEKALELQKVKYLEKDEIPVI 176

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  +  R      L++GLR  +        +     +I   KT  +         +
Sbjct: 177 LKKIKNNT-VRSIAILQLHTGLRIGEVLALTPDDVDFKNKTISVSKTKLVNGELGSPKTL 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
             +    I      +  D    N   F I +        + N   H  R     +  +  
Sbjct: 236 SSIRTIEISDFIAKLLLDYISSNKFIFKITYVTILNHLKILNIHTHIFRHTHVALLIEQN 295

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                +    G   +      YT   + ++
Sbjct: 296 VPIKVISQRLGHSDIKTTLSIYTHVTENMK 325


>gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 421

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 90/272 (33%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK-- 127
            ++ +    G  + N+   +++ ++ +           D  +R++T+  IR      +  
Sbjct: 122 EDFERMVSKGKRSQNTYNKYKTVYNHLSEFIRERYHREDMAFRELTSDFIREFDFFLRID 181

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   +   +  L + A+++  +  NP    E    +T+      ++  +     
Sbjct: 182 KECTHNTVWVYTMPVIALAELAIKKGLIRQNPFEDYEISMEETDRSYLLKEDVERLMLLK 241

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            S+     +   F F  ++GL   D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PSKSKYELVKDLFIFSCFTGLSYIDIQKLKWSNIQSFFDGHQWIISRRKKSDVASNVRLL 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K      N+      +  +     K    +A +      + H  R   AT+ 
Sbjct: 302 EIPKRIIEKYRGVTRNEYVFPVPSNATCNSHVKKLIEEAEIITEQKVTFHTARHTFATMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|170730468|ref|YP_001775901.1| phage-related integrase [Xylella fastidiosa M12]
 gi|167965261|gb|ACA12271.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 339

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 102/321 (31%), Gaps = 23/321 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G + YY+  G   R   P   +        + L  +               T + +  
Sbjct: 20  KSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAI-------AVTFRHVAE 72

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI 134
            YR        A N++     Y + +++   D    +  I   +IR  ++ R  +  SA 
Sbjct: 73  RYRAEVIPTK-AYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWR-TSKVSAN 130

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + +     L+ W   +     +        +R  E  R    +D      + +     R 
Sbjct: 131 REVALFSHLWNW--ARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQAADQTLRD 188

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
           A +    +G R SD      +H+ N    I   KTG  + + +      L+      K  
Sbjct: 189 AMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIKRILARKRG 248

Query: 255 FFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATISADAGATA 304
             + + +  ++              F+     AG+ K       +R  +AT  AD     
Sbjct: 249 MKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEIFQFRDLRAKAATDKADFAGDM 308

Query: 305 HELMATYGWKTVDQAETYTKG 325
            +  A  G  +V   E Y + 
Sbjct: 309 RQAQAQLGHASVTMTEHYVRK 329


>gi|54022203|ref|YP_116445.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54013711|dbj|BAD55081.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 394

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 107/355 (30%), Gaps = 41/355 (11%)

Query: 11  VTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +    T+ G+     +RK  G++              + + +   +       +P     
Sbjct: 9   IEPYETQSGRRYRVRYRKPGGKQTDKRGFRRKIDAERFAATVE-VSKMSGEYVAPSLGRI 67

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L  ++ +      +A ++  + ES +   +  + G      +    + + +     
Sbjct: 68  TVGELAPKWLERKQV-DVAESNYRTLESAWRTHVQPRWGTVAVADVELDAVETWIADLGR 126

Query: 129 T----------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T                 ++ I+    +  +   AV+ + + +NP   VE   +K     
Sbjct: 127 TVTDPNEPEKVIRKGSGATTIIRAYGVLAGILDTAVKSKRLRVNPARGVENLPKKVGKRH 186

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------- 225
            +   D  Q  +  S   + R     L Y G+R  ++    V  +      +        
Sbjct: 187 VYLTADDVQRLAAESGAER-RALVLTLAYCGIRWGEAVALRVGDIDFLRRRLTVADNAVQ 245

Query: 226 --------TQKTGTIITVELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFK 274
                     K+  +  V +P   +  L++   G++     F +             WF 
Sbjct: 246 LGVDHAVGHTKSRKVRAVPVPQFVLDELSVQCRGRDRKALVFGDGVNYLPRPKSSGGWFA 305

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD 327
               +A V   + H +R   A+++  A      L    G          Y    D
Sbjct: 306 GAVKRARVQAITPHDLRHTCASLAVSANVNVLALARMLGHADASVTLRVYADLFD 360


>gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302]
 gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302]
          Length = 428

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 77/258 (29%), Gaps = 20/258 (7%)

Query: 91  SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQFL 137
           ++ ++  +        +         D +  ++T   +       K        +AI+ L
Sbjct: 129 TKANYRKFDICKRHFAKFLEEKYARTDLNIIELTPIVVHDFDVYLKTVVGQCFNTAIKTL 188

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194
            + + +  +  +      +P L++   K K       T E++           +    R 
Sbjct: 189 KTFKTVIIFGRKAGVFNHDPFLNI-HFKTKRVDRGFLTDEEVDTIMHKEFATQRLVNVRD 247

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL   D       ++                        + +  +     E 
Sbjct: 248 IFLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLLDIPKIIIKKYEG 307

Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
              N     + +  + + + K  A   G+NK  + H  R   AT+    G     +    
Sbjct: 308 KAKNGRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTFATMMLTKGVPVESVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G  ++   + Y +  ++ 
Sbjct: 368 GHTSITTTQLYARITNKK 385


>gi|260591104|ref|ZP_05856562.1| putative transposase [Prevotella veroralis F0319]
 gi|260536969|gb|EEX19586.1| putative transposase [Prevotella veroralis F0319]
          Length = 389

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 74/258 (28%), Gaps = 7/258 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
            I   ++      ++  +R   +   + + R         +T+ ++ +  E       S 
Sbjct: 118 FIEYMKEHIETEDISEGTRKHKQCTLNALKRFGKIQKLTDLTSNNLVAFDEWLHDGTRSD 177

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                +   ++        +  + ++P   V+  + + +   P T+ ++Q+ +    +  
Sbjct: 178 VGIHTYHKHLKKYSHLLYIEGKIGVDPYTQVKFKRGECKEREPLTEAELQKLRKIKLDDK 237

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R  F F  Y+GL   D      +         K               F  +L   
Sbjct: 238 LDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGSRIKTTSKFFTPILGPA 295

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
               + +     K         +     A K     + H  R   AT++         + 
Sbjct: 296 MEVLKKYKFVLPKISNQKANDFLHLIEAALKLNKPLTFHIARHSFATLALAHDIPIENVS 355

Query: 309 ATYGWKTVDQAETYTKGA 326
              G K +   + Y K  
Sbjct: 356 RMLGHKNIRTTQIYAKVL 373


>gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
 gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14]
          Length = 320

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 83/304 (27%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-- 136
           ++       A  +  S+  +  Q +          + ++ +   +         A +   
Sbjct: 10  KEYMQVRYYANKTIESYIHWITQYVVFHNKTHPNLLGSRDVEQFLTYLAVEKKVATKTQS 69

Query: 137 --LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++     E +     L ++  K + E   P      +  + F     + +L
Sbjct: 70  LALNALSFLYR-----EIIKEPLTLEMKFQKSQLERKLPIVMTREEIKRFFNHVDPKYQL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------------------T 231
             + L  SGLR  +  R  VQ +  +  +++  +                          
Sbjct: 125 HIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLIKEQISLA 184

Query: 232 IITVELPDGFM--------KLLAMTPIGKETFFINNDKQKMNA----------------- 266
               +                L          F  +     NA                 
Sbjct: 185 KRYYDKDMETKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLLRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           T      K    +A + KS   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 TSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTH 304

Query: 325 GADR 328
             DR
Sbjct: 305 VLDR 308


>gi|291286467|ref|YP_003503283.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883627|gb|ADD67327.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 385

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 97/294 (32%), Gaps = 22/294 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            ++   +      +      ++       ++A ++  ++++    +    G+    +I  
Sbjct: 75  LKKLGIANVSSEVSFGTYAWQWYD-LKEPNIAYSTSKAYKTAVKALCETFGNMPLNQIKP 133

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            HI++ +   + +P +   ++  +  + +  V  + +  N    +++P+  +E I P+ K
Sbjct: 134 SHIQTYISKSELSPKTISNYIGVLYSVLQAGVADDILEKNSAEYIDKPEIGSEKIDPFEK 193

Query: 177 EDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
            +++Q   +  +      + +    Y+G+R  +        +  N  +I  Q+T      
Sbjct: 194 SEVEQILKWTKKNHPHITVLYAIGFYTGMRIGEVLALKWSDIDFNKHTILVQRTMTANKL 253

Query: 231 -------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKA 277
                      +++     + L                                ++K   
Sbjct: 254 KDSTKTSNYRIIDIIPELDEYLEAHKKYTFMKSEWVILTHYGDPFKKTDNIVDSYYKPCL 313

Query: 278 TKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
               +     + +R   A +  DAG   + +    G  T++   + Y    +R 
Sbjct: 314 KALKMRFRILNQMRHSFACMMIDAGENLNWIKNMLGHSTLEMLFKKYGNRINRQ 367


>gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218]
          Length = 329

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 88/301 (29%), Gaps = 59/301 (19%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFL 137
                 A  +  S+  +  Q IR  G+    K+  + + + +     +     S+    L
Sbjct: 13  MQVRHYARKTIESYLYWVVQYIRFHGNQHPNKLGNRDVEAFLSDLVVSKQVAASTQNLAL 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L+K  +++           ++   + +     T  ++++  +     +   L ++
Sbjct: 73  NALVFLYKEFLKKPLDIDLRFRHSKK---QRKLPVVLTPTEIKKLFAAIPAQT--LLPYQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPI----- 250
            +  SGLR  ++ R  V+ +  +  +I+  ++       V L      LL          
Sbjct: 128 LVYGSGLRLMETIRLRVKDIDFDYGAIRVWQSKGGKSRIVTLAKELHPLLRFQIETVKHL 187

Query: 251 -----------------------------------------GKETFFINNDKQKMNATQF 269
                                                     +        +  ++ T  
Sbjct: 188 YTQDQLNPNYDGVQMPNRIAEKYPSASKSLEWQFLFPAKQLCRYGDEPGWYRHHLHETTL 247

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                     A +    S H +R   AT   +AGA    +    G   V   + YT   +
Sbjct: 248 QKTIIKARFTAEIAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782]
 gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC
           49176]
 gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782]
          Length = 396

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 90/363 (24%), Gaps = 49/363 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +            P       +    +       +    P  K 
Sbjct: 24  RYAYKYTDTFGKPQFVYAWKLVP--TDKTPKGKREDKSLREKVKEIQKDLDDGIDPVGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L  ++ ++    ++   ++   +     +     G      +     +      K
Sbjct: 82  MTVCQLYEKHIRNHA--NVRHGTKQGRKQLMRILEKDTIGACSIENVKMSDAKEWALRMK 139

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQF 182
                  +      S++  F  A++ + +  NP         +  TE   P +    +  
Sbjct: 140 EKGYSFITISNHKRSLKAAFYTAIQDDCIRKNPFDFHINTVIEDDTEPKIPLSPMQEESL 199

Query: 183 KSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            SF          +     LL +GLR S+ C      +     +I               
Sbjct: 200 LSFVKSDKVYYKYYDELIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYR 259

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSI 271
                       + + D  ++ L      +       D               N   + I
Sbjct: 260 IETPKTENGIRKIPMSDRVLEALQRVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDI 319

Query: 272 WFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            F+    K             + H +R    T  A+AG     L    G   +     Y 
Sbjct: 320 MFRKLVEKYNKKHEEVLPVVTTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNYY 379

Query: 324 KGA 326
             A
Sbjct: 380 AHA 382


>gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365]
 gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365]
          Length = 395

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 89/327 (27%), Gaps = 77/327 (23%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHT 129
             +Y ++      + ++R ++     +  R   +         ++    IR+ +      
Sbjct: 20  FDDYLRTE--RGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHLAGLYER 77

Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + L+++R  F + V++  +  NP   V  PKR+    R    +D  +     +
Sbjct: 78  NDAATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAFRLIEAPT 137

Query: 188 EG-------------------------------------------------SQPRLAFEF 198
                                                               + R   E 
Sbjct: 138 RAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLRDRAIAEV 197

Query: 199 LLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L  SGLR  + C   +  +           ++  K G    V L    +  L      + 
Sbjct: 198 LYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALDAYLNVRP 257

Query: 254 TFFIN-------------NDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299
                                 ++            A + G    + H +R   AT   D
Sbjct: 258 LLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGAYEATPHALRHSFATHLLD 317

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
           +G     +    G  ++   + YTK +
Sbjct: 318 SGVDLRAIQELLGHASLASTQIYTKVS 344


>gi|256826758|ref|YP_003150717.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
 gi|256582901|gb|ACU94035.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641]
          Length = 381

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 97/325 (29%), Gaps = 22/325 (6%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFI-PAYMSALTGSTPKREYINSPRKKPTTLKW-LI 75
           +G+          R          T       +    +    E   +      TL+   +
Sbjct: 13  NGRWQVRVEFPRDRITGKRRQISKTIRGTRRKAERVKADMLAEAGKADVTCDATLREYAL 72

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            EY  S        ++   +     + ++   GD     + T  IR  ++    + S   
Sbjct: 73  EEYLPSKEA-ECKQSTIDGYRCRLENHVLPYLGDIALEDLRTATIRRWLDRLDKSQSVKR 131

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    +  + K A+ ++ +  NPC  +  PK K       T E    +   + EGS   +
Sbjct: 132 EAYKILDQVCKHAMYRDMMQSNPCDRIRVPKVKRYEPVVLTAEQAIAYLDHF-EGSSIEI 190

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN--------------IFSIKTQKTGTIITVELPDG 240
           A    L  GLR  +     V  +                   +I++              
Sbjct: 191 AVLLALGCGLRRGEIAALNVSDINWETGAVIVDDSYVTTSKGTIRSTTKNGRARTVHMPE 250

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSA-HGVRKFSATIS 297
            +         K    +  D ++      +  ++ K      G+ +     +R  S T++
Sbjct: 251 SLLARLHKIAPKSGALLQWDGRRYRPHSITEAYERKIQSLPEGLPRIPLKNLRHTSLTLA 310

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
            D+GA   ++    G  +    E Y
Sbjct: 311 YDSGARITDVRDRAGHSSEAVTERY 335


>gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
 gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1]
          Length = 321

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 81/301 (26%), Gaps = 59/301 (19%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAIQFL 137
                 +  +  ++ S+  Q I        ++++T  +   +     +      +  Q L
Sbjct: 13  MRARHYSERTIDAYLSWIFQYIVYHDKKHPKEMSTAEVEDFLSYLITSRNLAMRTQNQAL 72

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L+K  +                 +  +     T +++ +            L  +
Sbjct: 73  NALVFLYKHILHDPIDVNMRFKKS---NKSKKLPTVLTVKEVSKVLESMLPN--FLLPAQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLAMTPIGKETF 255
               SGLR  +  R   Q +  +  +++  +        V L       +       E+ 
Sbjct: 128 LKYGSGLRLMECLRLRYQDIDFDYGALRIWRAKGNKNRVVTLARELFPAIRRQQQHVESI 187

Query: 256 FINN----------------------------------------------DKQKMNATQF 269
           +  +                                               +  +N +  
Sbjct: 188 WRQDVKQSDYSGVWLPNALATKYPNSNKELNWQFLFPSARLSIDPTSNLIRRHHINESSV 247

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K+   K G+ K    H +R   AT   ++GA    +    G   +   + YT   +
Sbjct: 248 QKALKSAVKKTGIEKRVSCHTLRHSFATHLLESGADIRTVQEQLGHTDLKTTQVYTHVIN 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98]
          Length = 304

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 86/278 (30%), Gaps = 27/278 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT----TKHIRSGVESR 126
            + E+       +L+ ++  S++    +        G FD  K+T     + +       
Sbjct: 6   AMQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHEL 65

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--------PKRKTEGIRPWTKED 178
           K++ S+  +   +++V FK+   +  V  NP   ++              +        D
Sbjct: 66  KNSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSKEDTITDVLTDEQVKSVLEHFD 125

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
              +K       + R+    L+ +GLR  +        +     +I T      +     
Sbjct: 126 RGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKRTVATIPY 185

Query: 239 DG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                        F++            F +   +++     S  FK       +   + 
Sbjct: 186 TRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNMEGLTC 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H  R++ A+     G  +  L      +T+   E Y K
Sbjct: 246 HAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVK 283


>gi|289166187|ref|YP_003456325.1| integrase [Legionella longbeachae NSW150]
 gi|288859360|emb|CBJ13296.1| putative integrase [Legionella longbeachae NSW150]
          Length = 375

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/336 (10%), Positives = 90/336 (26%), Gaps = 27/336 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +  P +     + G +    +K  GRR+            A           R      
Sbjct: 3   RKRTPGLQ----KRGSVWCIDKKVFGRRL-CESTGTDNLEEAEKYLARRLEEIRLATVYG 57

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +   T K   +++            S         ++++  GD     I    ++S +E
Sbjct: 58  VRPKRTFKEAATKFLMENQHK----RSISDDAGRLRELVKYIGDMPIEAIHIGSLQSFIE 113

Query: 125 SRKH---TPSSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            R+    +  +    L  +R +        + +  +         +   + +  +P+   
Sbjct: 114 GRRKDEVSTRTINHGLMIVRRILNLAASEWMDEFGLTWLNSAPKIKLLPEPDLRKPYPLS 173

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
             +Q K F       +    F + +G R  + C                           
Sbjct: 174 WDEQHKLFQQLPEHLKSMALFAVNTGCRDREICELRWDWEIQIPELPHIIVFIVPGELVK 233

Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                 +   +   +++        T   +   + ++    S  ++    KA +     H
Sbjct: 234 NGEERLIVCNETVREVIEGQRGKHSTHVFSFKGRPLSR-MLSTGWRQAREKAKLPEVRVH 292

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++         AG +  +     G ++      Y+
Sbjct: 293 DLKHTFGRRLRAAGVSFEDRQDLLGHRSGRITTHYS 328


>gi|254719515|ref|ZP_05181326.1| integrase/recombinase protein [Brucella sp. 83/13]
          Length = 290

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 103/249 (41%), Gaps = 6/249 (2%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                  F   Y   L G   ++  +   R +P +++WL+  Y +S  + S +  ++   
Sbjct: 9   AGSITQAFTEEYHRVLAGGRGEKA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDK 67

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           +S  ++     G+  ++KI    I +    R  TP +A + +  ++ LF WA+  E    
Sbjct: 68  KSVLNRYCLNVGELPFKKIRKSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATF 127

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            P   V +  +   G   W++ ++ ++++ +  GS  RLA E +L  G+R SD  + G +
Sbjct: 128 TPANGVTKIHQSP-GFHTWSEAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWR 186

Query: 216 HLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           +L  +      +    K    +++ + D   + L      + TF I    +  +   F  
Sbjct: 187 NLVGDRIEFMPEKGSGKYAQSLSLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGN 246

Query: 272 WFKAKATKA 280
             +    + 
Sbjct: 247 KMRQWVQRC 255


>gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061]
 gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061]
          Length = 337

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 97/314 (30%), Gaps = 19/314 (6%)

Query: 18  HGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            G+     R     G+R++    ++     A+   +  +T  +++  + +     L  ++
Sbjct: 8   GGRYKVDIRPRGTSGKRVQ-RIFNKKADAVAFERNILANTNTQDWKPNTKDFRK-LSEIV 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             +       +L    + ++      +IR  GD    ++T + +      R       S+
Sbjct: 66  EVWWN-YEGRNLTWGKKRNY--SIQGMIRDMGDPAVYQLTPRFLSEYRSQRLYEGIKASA 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + +  +  +F              +   +P +  +    +  E               
Sbjct: 123 INRDMAMLSGIFTVLTDIMEYTGTHPIKSIKPLKIKKPEMSYLTEPEIADLLNAVTDDAW 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           RL     L +G R  ++ +   +++ +N  +    K G   T+ + D  MK++     G 
Sbjct: 183 RL-TVLCLNTGARWGEANKLRAENMLHNRVTFTETKNGKHRTIPISDEVMKVVKTKSSGA 241

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                       N   ++   K         ++ H +R   A      G     L    G
Sbjct: 242 LFDV--------NYNSYANILKKVKLDLPQGQAVHVLRHTFAAHFMMNGGNILTLQKIMG 293

Query: 313 WKTVDQAETYTKGA 326
              + Q   Y   A
Sbjct: 294 HANIQQTMAYAHFA 307


>gi|227544984|ref|ZP_03975033.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300909983|ref|ZP_07127443.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
 gi|227185045|gb|EEI65116.1| integrase [Lactobacillus reuteri CF48-3A]
 gi|300892631|gb|EFK85991.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112]
          Length = 362

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 101/365 (27%), Gaps = 39/365 (10%)

Query: 12  TKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
             ++ + G   YY    +R  +G+R +           A  +A              +  
Sbjct: 3   YAKKAKKG---YYGIAEYRDKNGKRHQKSAGCFKLKRDAIKAAQQLEDKYSRVNIEMQAV 59

Query: 68  PTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             T       +        SL+  ++  + ++   I     D     I     +  +   
Sbjct: 60  --TFADYYQNWFSIYKENSSLSDITKSRYRTFSKTIADYFKDTKLVNIKRSTYQQFINWY 117

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF 182
              H  SS  +   ++R    +A+  + +A +   +V+          +   T ++++  
Sbjct: 118 GANHAFSSVSKLNGAIRACVSYAIDDDIIAKDFTHNVQLVYNEDNQTKVEYLTNKEIKSL 177

Query: 183 KSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
           K             R      +Y+G+R S+        +     +I   K+         
Sbjct: 178 KKAVVANLNHYNTSRYMILTAIYTGMRKSEIQALTWNDIDFLHSTIAITKSWDDAKKAFK 237

Query: 231 -------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                              +L  +        F N       +   +   ++  ++ G+ 
Sbjct: 238 TTKTESSQRTIKVNRQLLNRLAELKANNTTMVFQNVLGTIPTSNALNKCLRSIMSECGIE 297

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN--SR 337
           K     H +R          G   + +    G   +     TY+   D  +         
Sbjct: 298 KQGFHFHSLRHVHVAYLLSKGVDIYAISKRLGHSNITITLNTYSYLIDEYKAKNDTLIID 357

Query: 338 RISSV 342
           ++S +
Sbjct: 358 KLSEL 362


>gi|300863537|ref|ZP_07108487.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
 gi|300338462|emb|CBN53629.1| Tyrosine recombinase XerC [Oscillatoria sp. PCC 6506]
          Length = 304

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 94/299 (31%), Gaps = 30/299 (10%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             TL  L  E+        L+++++ S+ES    ++ + G      I+ + +   + S  
Sbjct: 2   TVTLARLAREFLDRP---GLSLSTQRSYESTLMPLLGQWGRLPIEIISRQLVLDYLRSLT 58

Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--------IRPWTKED 178
           H + ++  +    ++ L  + V Q Y+ +NP   +++ K   E         IR  + E 
Sbjct: 59  HLSITTHHRHQAIIQALLNFGVEQGYLTVNPIAGLKQRKLDPEKGECSTDAVIRYLSAEQ 118

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           +           +       L  +G R  +     ++ +   +   +    G  +     
Sbjct: 119 LSILYELLVPDVRLHAIVRLLHRTGARIGELLTLDLEGIDLQLQKFQVMGKGKKLRWCFY 178

Query: 239 DGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                 +    I                  N    +++  Q    +++   K+ +     
Sbjct: 179 SEDAASIVNNYIKYYRDLGTPALFTAQNPFNQRVTRLSYQQVYCCWQSFTEKSPLLQGIR 238

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
            H +R   AT     G     EL A  G + +     Y K        +       + +
Sbjct: 239 LHDLRHTFATE--RVGLMALEELRALMGHENIQTTLRYQKVTSLRAEEVARDALNILVA 295


>gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735]
 gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735]
          Length = 410

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 81/272 (29%), Gaps = 20/272 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLT 138
             +   +            D          ++    I       +      P++A + + 
Sbjct: 130 AATLQKYNVCKKHFSNFLRDKYGRSDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
           + + +     +   +  +P L++     +       T E++ +  +      +    R  
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRF-HMEPVNRGFLTDEEILKIANKNFGIGRLELVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--E 253
           F F  ++GL   D      +++                +VE     + +          +
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           T+        +   + + + K  A   G+ K  + H  R   AT+S   G     +    
Sbjct: 309 TYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKML 368

Query: 312 GWKTVDQAETYTKGADRI--RLGIKNSRRISS 341
           G   +   + Y +  ++       + + ++SS
Sbjct: 369 GHTNIKTTQIYARITNKKIEHDMDELADKLSS 400


>gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 408

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 94/319 (29%), Gaps = 26/319 (8%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y++A          I   R      K    +Y +     + A  +   +E    +++   
Sbjct: 89  YVTAELVKNAFLGKIARERTLIEFFKQHNEQYLQKVKM-NTADKTYSRYELTKKRLMEFM 147

Query: 107 G------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  D   + I    I         +   + ++A++F+   R +  +A +   +   
Sbjct: 148 KFKYSVSDMLIKDINVVFIEDFLLYIKNNYGCSHNTAMKFVQRFRTVVNFA-KNTGLVTA 206

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAG 213
                 R + +       T E++    +      +    R  F F  Y+ L   D C   
Sbjct: 207 DPFGSYRVRFERTDRDYLTMEEITTIYNHEFSSKRLEQVRDLFIFSCYTALSYIDVCELK 266

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQF 269
            + ++                       ++LL +     E +       K+    +  + 
Sbjct: 267 QEDIRTGFDGNLWI--IRKRHKTNVTSTVRLLDIPKAILEKYKDKLPNGKILPVISNQKM 324

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGA 326
           + + K  A   G+ K+   H  R   AT      G     +    G   +   + Y +  
Sbjct: 325 NDYLKEIAAICGIEKTLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARIT 384

Query: 327 DRIRLGIKNSRRISSVVDS 345
           +       +   ++  +D+
Sbjct: 385 NLK--VSNDMEMLAQKLDA 401


>gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 75/299 (25%), Gaps = 51/299 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
                  +   +        +      +        +  ++Q+        ++ ++ F  
Sbjct: 71  IALNALAFLYNRFLQQPLGDIDYIPASKPRRLPSVISANEVQRILQVM--DTRNQVIFAL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------------------- 227
           L  +GLR ++  R  V+    +   I                                  
Sbjct: 129 LYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPVIKQLIEQARLIQ 188

Query: 228 ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIW 272
                                        + + P         N    +  ++ +     
Sbjct: 189 QDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKA 248

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            KA   KAG+     + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 249 LKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQ 307


>gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 259

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 11/229 (4%)

Query: 108 DFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSV 161
           D    ++    I              P++   +L  ++ + K  +               
Sbjct: 9   DMPLAELEQSFIEQYHVYLKSDLGLKPTTVSGYLKCLKYVVKIAFNNGWMPRNPFSLYQY 68

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             P  +   +       M   +  +      R  F F  ++G+  +D        ++ + 
Sbjct: 69  TAPNPERSFLTEDELRRMMTTELRYKRQDYNRDMFLFSCFTGICYADMASLTYDRIEQDA 128

Query: 222 FSIKTQKTGTIITVELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                       T       +    L +    +                     K  A +
Sbjct: 129 QGEWWISGNRQKTETRYVVKLLPYALFILNKYRGLTGDGRVFAMSTLDSIDDSLKNIARE 188

Query: 280 AGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKG 325
            G++K  S H  R   AT I    G +   L    G K +   + Y K 
Sbjct: 189 CGIDKQLSFHLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAKV 237


>gi|294795037|ref|ZP_06760172.1| XerC/D integrase-recombinase protein (XerC/D) [Veillonella sp.
           3_1_44]
 gi|294454399|gb|EFG22773.1| XerC/D integrase-recombinase protein (XerC/D) [Veillonella sp.
           3_1_44]
          Length = 283

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 13/283 (4%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +N  ++   TL+ L +E+    H  S++ ++  S+   F  I     D     I  +H++
Sbjct: 8   LNRRQRNTITLRQLFNEWLP-IHSQSISNSAVKSYHIAFKHISN-IADMPITDIHFQHLQ 65

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + + S        SS  +  T +  LF +  ++   +          P   T   R +T+
Sbjct: 66  NVINSMHVKGLSYSSCKKVRTLLNQLFNYAIIKDYPITNYVIHLTLGPNIPTIRRRVFTR 125

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + + +    W   +        LLY+GLR  +      Q +      +  +   T     
Sbjct: 126 QQINK---LWEVDTSYSHMILILLYTGLRIGELLNLRKQDIHRRSSYLIVRHAKTKAGEG 182

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                   +        T         ++ T F   FK    +     + H  R   A+ 
Sbjct: 183 RIIPIHHRIMPLIEQVYTSTEAYLFT-ISYTTFHKNFKDIMKQLNCKHTIHDTRHTFAS- 240

Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRI-RLGIKNSR 337
             D+ A  + L +  G K  D     YT    R  R  ++  +
Sbjct: 241 LLDSVAPPNTLRSLLGHKQGDITTRVYTHKTIRELRKAVELLK 283


>gi|221141368|ref|ZP_03565861.1| integrase-like protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|302750283|gb|ADL64460.1| integrase-like protein [Staphylococcus aureus subsp. aureus str.
           JKD6008]
          Length = 397

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 111/343 (32%), Gaps = 43/343 (12%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ ++G   YYFR        G++I+      +T   A     +     +    S  K  
Sbjct: 7   KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFNTKKEAREE-YSKLLLMKPEELSENKDK 63

Query: 69  TTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            T K  I   +        + + +  +      +            I    +++      
Sbjct: 64  MTFKHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLS 122

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               S   ++ +++ LF  A+ +  V      NP   +   K++   I  WTKE+ ++  
Sbjct: 123 KKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVI 180

Query: 184 SFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN-----------------NIF 222
           S   +    +      L+    +G+R  ++     + +                   N  
Sbjct: 181 SLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYR 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKA 277
            ++ +   ++  + L    +  L+     ++      F ++ +         S   +  A
Sbjct: 241 FVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYA 300

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 301 KLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|154244572|ref|YP_001415530.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154158657|gb|ABS65873.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 452

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 100/372 (26%), Gaps = 46/372 (12%)

Query: 7   LPPFVTKERTRHGKIIY--YFR-KGHGRRIRLP--YPHESTFIPAYMSALTGSTPKREYI 61
           LP F  +  T  GK  Y   +R  G  RR  +                A  G   + +  
Sbjct: 26  LPGFGLRVFT-SGKRSYVLQYRSAGRSRRFTIGLHGVWTPERARQEAKAQLGRIAQGDDP 84

Query: 62  NSPR---KKPTTLKWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDF 109
              R   +K  T+K L   Y                    +           I+   G  
Sbjct: 85  AEERLLDRKALTVKELCDLYLADLQAGLILGKGGRPKKPGTIASDLGRIHRHIVPLLGSR 144

Query: 110 DYRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVR 149
             R +T   I   ++                      +    +A + +  +  +  +AV 
Sbjct: 145 RVRDLTKADITRAMKDIMAGKTRISVMTKNLRGRSIVRGGAGTATRTIGLLGGILTYAVE 204

Query: 150 QEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGL 204
              +  NP   V RPK      R        +       S+    R+       +  +G 
Sbjct: 205 AGIIETNPAHGVRRPKDNVRARRLSEAEYRVLGDLLKTASKNENYRMSVEIIRQIALTGC 264

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           R  +           +   ++ + +        +    ++ L          ++   +  
Sbjct: 265 RRMEMVTLRWDEADTDCSCLRLKDSKEGSSIRPIGLPVVEYLERRRNEAIGDYVFPGRGG 324

Query: 264 MNA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            NA   F   +      + + + S H +R   A+++ D G T   + A  G         
Sbjct: 325 ENAFGSFPNHWGKIFANSPLADISPHVLRHSFASVANDLGFTEVTIAALVGHAKGSVTSN 384

Query: 322 YTKGADRIRLGI 333
           Y    D   +  
Sbjct: 385 YIHTLDTALIMA 396


>gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 427

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/420 (11%), Positives = 107/420 (25%), Gaps = 76/420 (18%)

Query: 1   MTPSLRLPP-FVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGST 55
           M+    L      ++  R          G     G+  + P             AL    
Sbjct: 10  MSGRSSLSGIGSVEKTGRKNTWRIRVALGKDPVTGKYRKSPSRTVHGTKSEATKALMEYR 69

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            +    ++ R    T+      + +       +  +         +I    G +  +++ 
Sbjct: 70  AEIMDASAVRPSDITIGEYAVRFHEEREHEFRSPLAWNREAYEIKRIAEAFGAYRLQELD 129

Query: 116 TKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T  +RS     +   ++  +       +  +   AV    VA NPC  +  P+ K +   
Sbjct: 130 TLTLRSAYSRMRKEGATESRLHRVHQKLSQIMNQAVDDGLVAKNPCSPISIPRPKPKERH 189

Query: 173 PWTKE--DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------- 221
             T +              S P  A    L++G+R  +      +H+  +          
Sbjct: 190 SLTVDEAQRLNSIILGLPASAPHCAVLLALHTGMRRGEVLGLTWEHVHFDKRRLYVAQQY 249

Query: 222 ------------------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                                         +    +         L       +A+    
Sbjct: 250 ACDKVPRDPKSKKSKRWISLDSEIVAYLEEWKRTQRIELENRKRRLDREDTDAIAILQTE 309

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAG------------------VNKS------AH 287
           K     N      +   F  WF+    + G                  + ++       H
Sbjct: 310 KSPVVTNVYGGYYDPNIFGRWFREFCVENGFGEQGRAIRYVDSRGIPRIKRTGYEGLKFH 369

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +R   AT+    GA    +    G  T     + Y    ++     + +  I  ++  +
Sbjct: 370 ELRHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIEQN--DREAADEIGELLGGE 427


>gi|293395226|ref|ZP_06639512.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
 gi|291422403|gb|EFE95646.1| shufflon-specific DNA recombinase [Serratia odorifera DSM 4582]
          Length = 345

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 88/332 (26%), Gaps = 31/332 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   GK     R               TF               +     ++  +T+K 
Sbjct: 13  RKLPSGKWNAQVRIKGHP------TQTKTFFT----IEEAEKWSSDCEEKFKRSESTVKA 62

Query: 74  LISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
           L   Y +     +        S  +    + +  G     KIT++++ +    R    + 
Sbjct: 63  LSLVYLEEVLTKNGKPRGGYDSIRNRLVNLDKHFGSTSLEKITSENVATYKVERLKKAAN 122

Query: 132 -SAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            +    L  +    +WA  ++ V   +    V  P+      +  T    Q         
Sbjct: 123 GTVRLELQLLSRFLRWAASEKGVACNDVVKPVRLPEAGKPRDKILTPLQYQMILERVETC 182

Query: 189 ----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
                      S+ +        + +R  +        +      I              
Sbjct: 183 RSKLSGGLQGMSEAKAIIILAWETAMRRGEILALTPAMIDFRQRVIHLADHQTKNAEARD 242

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           V L    + LL     GKE     + K   +     S  F+    +A +     H +R  
Sbjct: 243 VPLSSTALDLLKSLCEGKEEERYRHTKLFSLRPYSVSQAFRRACREARIEGVCFHSLRHT 302

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
             T  A+ G    +L    G K +     Y+ 
Sbjct: 303 CITRYAEKGLNTIQLQCISGHKDITMLARYSH 334


>gi|206599920|ref|YP_002241725.1| gp40 [Mycobacterium phage Fruitloop]
 gi|206287008|gb|ACI12354.1| gp40 [Mycobacterium phage Fruitloop]
          Length = 372

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 104/368 (28%), Gaps = 42/368 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRR----------IRLPYPHESTFIPAYMSALTGSTPKREY 60
           V +   + G   Y      G R           R      +  + A+ +A          
Sbjct: 4   VRERVRKDGTTAYLVSYRFGGRGSAQGALTFDNRKAADAFAAAVDAHGAARALEMHGINP 63

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
                K   T+   I  +        +   +   +E Y  + I    GD    K++ + I
Sbjct: 64  TPRGTKSELTVAEWIRHHIDHL--TGVEQYTIDKYEQYLANDIKPNLGDIPLSKLSEEDI 121

Query: 120 RSG---------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                        +   H P +       +      AV +                  + 
Sbjct: 122 ARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPRYLSTNPASGRRLPRGNAEDD 181

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +  +   +     +L  +F++ +GLR  +      +H+     +I+ ++  
Sbjct: 182 DEIRMLTHAEFDRLRDAVTPHWKLMVQFMVSTGLRWGEVSALQPKHVDLETSTIRVRQAW 241

Query: 231 T-------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAK 276
                           +    D   +LL    +  E  F+N D   +    F    +   
Sbjct: 242 KYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPA 301

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR--IRL 331
             KAG+    + H +R   A+     G     +    G +++    +TYT   DR   R+
Sbjct: 302 VEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRV 360

Query: 332 GIKNSRRI 339
             +    +
Sbjct: 361 AAEFMDGL 368


>gi|160876615|ref|YP_001555931.1| integrase family protein [Shewanella baltica OS195]
 gi|160862137|gb|ABX50671.1| integrase family protein [Shewanella baltica OS195]
 gi|315268811|gb|ADT95664.1| integrase family protein [Shewanella baltica OS678]
          Length = 338

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 105/341 (30%), Gaps = 43/341 (12%)

Query: 7   LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
           LPP V   R R GK I Y  ++ +  ++             AY  A+   + +       
Sbjct: 11  LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVAELSLE------- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T+  L  EY  SA++  LA  ++   +   +   +  G     +I   HIR  ++
Sbjct: 63  ----YTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R  +  + A   L +  V+F W   +     NP   ++   +     R     D +   
Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGIK---KFKVKARDRYITDSEFDA 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + ++A E       R  D  +     +  +   I+  KTG            K
Sbjct: 176 LLSCAEIRLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235

Query: 244 LLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
            +A                 +   K+        +K    K  ++        + H +  
Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-- 293

Query: 292 FSATISADAGAT-----AHELMATYGWKTVDQAETYTKGAD 327
                    G +       E     G KT+ Q  TY +  +
Sbjct: 294 ------KAKGVSDFEGTLSEKQQYSGHKTLAQVNTYDRKVE 328


>gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 291

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 72/257 (28%), Gaps = 6/257 (2%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ ++ K       +  +   +        + +            +        +  S
Sbjct: 18  DEMLQQFEKMMRNDEKSDATVRKYMHDLKAFQQYAEKKQPVTKQVVIVYKQYLMEHYAVS 77

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    L ++   FK                    R+++              +     ++
Sbjct: 78  SVNSILAALNGFFK-EYGWYDCMTRSLRVQRNSFRRSDKELTKEGYYRLVKMAEKRGNTR 136

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTP 249
             L  + +  +G+R S+     V+ L +    +  +     +    EL    +K +    
Sbjct: 137 LSLIMQTICSTGIRVSELEFITVEALYSGRAIVSLKGKTRAVLLPAELCRKLLKYVRAHN 196

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
           I     F++ +   ++ +      KA    AGV       H +R   A    +       
Sbjct: 197 IVNGCVFVSRNGNPLDRSNIFHDMKALCETAGVSPQKVFPHNLRHLFAVTYYEEEKDIAH 256

Query: 307 LMATYGWKTVDQAETYT 323
           L    G  ++D    YT
Sbjct: 257 LADILGHSSIDTTRIYT 273


>gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
 gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp.
           AzwK-3b]
          Length = 316

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 23/302 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
            +      +S   +  TL     E +           +    +  +   +  + G +   
Sbjct: 7   RSKTARDNSSRSVERVTLSRFFDEQFFPHVRVTKR--HFHHDWSIFNTHVRAQLGHYHLD 64

Query: 113 KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRK 167
           ++T   +   V  +  +    S+  + +  M  +   A     V          +R    
Sbjct: 65  ELTNPVLDVWVREQVVSGLQRSTINKHIYLMNRMLNLARHWCLVPAQNPDQQPLKRLVVG 124

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK 225
               R  + +++Q+  +     S P L       L +G R  ++  A  + +  +     
Sbjct: 125 DYKQRFLSADEIQRLIAACRRSSHPYLHHFVQILLLTGARKGEARTALWRDVDLDKRIWT 184

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFK 274
             ++    +  +      + +   I +    +       +              F   + 
Sbjct: 185 VPRSKNGRSRRILLNTNAVDSFNAIRRTAERLQQPTLPTSFVFTNPRTGRAYDSFYAAWY 244

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
               +A + +   H +R   A++  + G + +E+    G  +V   + Y   A DR+   
Sbjct: 245 VARDQAKLEDVRIHDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRLHSR 304

Query: 333 IK 334
            +
Sbjct: 305 AE 306


>gi|94267190|ref|ZP_01290806.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93452099|gb|EAT02779.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 406

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 109/361 (30%), Gaps = 33/361 (9%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGS---------TP 56
             +       G+  +  R    G  RRI L    + + + A  ++               
Sbjct: 24  KGLVLLVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLLQARNASEATRSIIKQGLDPAL 83

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           KR    +  K   T+  L++EY         + + +         ++   G     +IT 
Sbjct: 84  KRTEEKTAHKTSPTVSDLLTEYWD-MELKE-SPSGKERRRLVEKDVLPPWGKRKVAEITR 141

Query: 117 KHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--- 172
           +     +++ R   P +  +    +  +F +A  +  +  +P + + + K +        
Sbjct: 142 RDAALLLDTVRARAPVTGNRLQGVLVRMFNFAAERGVLEHSPLMGLRKKKEQPRSRVLAD 201

Query: 173 ---PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
                  + +    +        +LA + +L +G R  + C      +  + ++I     
Sbjct: 202 KEIKLLWDALALDNTAMDIYRVSKLALKMILLTGQRPGEVCGMTWDEIDGDTWNIPAERM 261

Query: 228 KTGTIITVELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAG 281
           K+     V L    ++++                  +  +  +     S        + G
Sbjct: 262 KSKEPHNVPLGSMALEIIEQARRYSPRGSTFVFKSSHFKEGPITPHSLSKAILRHWQEMG 321

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSR 337
           V    + H +R+   T  A+ G          G K       Y + +     R  +    
Sbjct: 322 VTERFTPHDLRRTLRTRLAEIGVDDVVGERVLGHKLQGIMAVYNRHSYDKEKRQALALWE 381

Query: 338 R 338
           R
Sbjct: 382 R 382


>gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88]
 gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88]
          Length = 343

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 91/295 (30%), Gaps = 48/295 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT 129
            I ++        L   +  S+ES      R   D     + + IT +  +  +   K  
Sbjct: 19  AIDDFMFYCQQKDLRPKTIASYESTLRLFARYLEDTFSINNVKDITEEMCKDYITYTKER 78

Query: 130 P----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                        ++   ++ +++V F W + +    +N    +
Sbjct: 79  GKYTFVADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVNNMQRI 138

Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           ++ K         T E+     +   +      +  +  + ++ +G+R  ++    + ++
Sbjct: 139 KQFKNNRISKDQLTDEEFKRLVRYLDTTKYHEFRDYVIIQLIIDTGMRIGETLALTIDNV 198

Query: 218 QNNIF----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------T 267
             +        +  K      V       +LL      K+ +  ++    +        +
Sbjct: 199 DLDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDLLFCVKRGTQLQIS 258

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            F   F     +A ++K  S H +R   A     AG +  +L    G  +V   E
Sbjct: 259 NFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTE 313


>gi|313633652|gb|EFS00410.1| Int [Listeria seeligeri FSL N1-067]
          Length = 384

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 94/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLKNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK- 127
             K     + K+   G  + ++   ++  ++Q +   G+      I     +  +     
Sbjct: 58  KFKEFYELFMKTFKEGKSSQSTINLYDLAYNQFVDYFGEKRKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +            +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
              +  S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAK 276
                + + +  ++ L         +   +               + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CNTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 109/340 (32%), Gaps = 54/340 (15%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115
           +    ++P     TL+  +  Y K     S   N+  SF SY    I    GD+    I 
Sbjct: 14  RYGRSDTPFDHMPTLEEWLFYYLKHFVKPSSKPNTYASFRSYICSHICPLLGDYALCDIC 73

Query: 116 TKHIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +++ V  +               +  + +T +R+ FK A++   ++ +PC  VE PK
Sbjct: 74  EAVLQAYVNIKYENGRLDGKGGLSVKTLKEHITVLRLAFKRAIQLGIISYDPCRCVEYPK 133

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
              + +   + ++ +   +  S   +    L     L++GLR  +     +  +      
Sbjct: 134 EVKKEVSVLSVQEQENLTTAISPVYRENSMLPVLIALHAGLRIGEVSALRIDDICLSKRV 193

Query: 219 -------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                              +     ++ K+  +  V + +     L +           +
Sbjct: 194 IRVDESLNRVMTYEEDGTIHCPLLYQSTKSSRVRRVPMNETLYAALNVYLATMPKQLKAD 253

Query: 260 DKQK---------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
           +            M   + +  F     +A +     H +R   AT + +AG       A
Sbjct: 254 EHAPLFRTSGGNVMEPRRITYHFHKLLERAEIQGIHFHSLRHTFATRALEAGIPMKYCSA 313

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSDDP 348
             G  +    E  Y   ++         ++    +D+  P
Sbjct: 314 MLGHASTAITENLYAHASE------DQLKKEIKKLDASHP 347


>gi|238020439|ref|ZP_04600865.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147]
 gi|237867419|gb|EEP68425.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147]
          Length = 336

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 80/283 (28%), Gaps = 15/283 (5%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRK 113
              +  +   +         +++ K             S  S   ++         D   
Sbjct: 7   ELWQQQHLKVRPKRLWDEAAAKWLKEKQDK-------KSIRSDIGRLRALGALRGKDLAS 59

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  + I   V +     S+  ++L  +R +   A R+     +        + K      
Sbjct: 60  LDRRTIMQTVIALPCGNSTKNRYLALIRAILNKAAREWEWLDHAPRLTLYQEPKKRIRWL 119

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
              E  +         +       F L +GLR  +      + +     +          
Sbjct: 120 KPAEAQKLLDVLAQRHTLLHDLAAFSLATGLRQRNVLELKWEQIDIQRRTAWINADQTKG 179

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
              I V L    + +L          F  N+ +K+++   S  +K    +AG+ +   H 
Sbjct: 180 GQAIGVPLNQTALHILQQQKRCAVYVFTQNNGKKLHSIS-SRIWKDCLKEAGIHDFRWHD 238

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A+     G     L    GW+     E Y   +    L
Sbjct: 239 LRHTWASWLIQRGVPIAVLKEMGGWENAKMVERYAHLSSEHLL 281


>gi|114046522|ref|YP_737072.1| phage integrase family protein [Shewanella sp. MR-7]
 gi|113887964|gb|ABI42015.1| phage integrase family protein [Shewanella sp. MR-7]
          Length = 338

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 33/336 (9%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSP 64
           +P  V   + R GK   Y  K   R I L       +    AY +A+  S          
Sbjct: 11  MPKGVYLHKVR-GKATSYIMKNSKRTITLCSASSTRAEVWTAYEAAIEKSL--------- 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T K +  EY+ SA +  LA  S+   E       +  G+ +   I   HIR  ++
Sbjct: 61  --TKYTFKRMADEYQASATFKELAPRSQRDRERELAMCNKVFGEMEPDTIKPHHIRRYMD 118

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R +T  + A   L++  V+F W   + +   NP   V++ K K+        E     +
Sbjct: 119 IRGNTSRTQANHELSACSVVFGWGYERGHCKENPAKGVKKFKNKSRDRYITDYEFNALLE 178

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + ++A E       R +D        + +    I+  KTG            +
Sbjct: 179 CCEQ---RLKIACEISYLCAARQADVLSLKWSQVMDEGIFIQQGKTGKKQIKAWSPRLHE 235

Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRK 291
           L+      ++              ++ A      ++    K  +         + H ++ 
Sbjct: 236 LINEAKTLRKGIASVFVINKTGGGRLTADGLRSSWRRAIDKLALQYPDIERTFTFHDIKA 295

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +         H+     G KTV Q   Y +  +
Sbjct: 296 KGISDF---EGNIHDKQQFSGHKTVGQVNVYDRRTE 328


>gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14]
          Length = 396

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            ++ +++     SL  ++R +  S  + +     D  +  +T + + S     +      
Sbjct: 108 FLTFFKEEVSNSSLKESTRQNHLSTLELLQEYKKDIVFTDLTFEFVSSFDNYLQSKGYHL 167

Query: 134 IQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                 M+ L ++      ++            + K         + E++ + +    EG
Sbjct: 168 NTIAKHMKHLKRYVNVAINKEYMDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEG 227

Query: 190 S-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 + + AF F  Y+GLR SD       ++               +   +       
Sbjct: 228 KFTKFQKSKDAFLFCCYAGLRYSDFINLTAANIVELHQET--WLIYKSVKTGIDVRLPLY 285

Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
           L                +N   +  + +  +    A A  A ++K  S H  R  +AT+ 
Sbjct: 286 LLFEGKGLRVLENYKDDLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +GA    +    G K+V   + Y    D
Sbjct: 346 IYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
 gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4]
          Length = 322

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 74/279 (26%), Gaps = 24/279 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            +      L   +   +E +    +  +G    +++T  HI S + S   +  + +  L 
Sbjct: 40  IRQMRATGLRERTISDYELHIGHFMSVTGAQFLQELTVNHIYSWLSSMNVSNQTKLTRLK 99

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSEGSQPRLA 195
            ++          ++ +N   SV+             +E                +  ++
Sbjct: 100 CLKAFLGRCFDNGWIEVNFWKSVKIKVDSPVKEGATDREINLLLSMLDLTRFIELRDAVS 159

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIG 251
              +  +G+R     +   +H+      ++      K    I +   D   ++L      
Sbjct: 160 VLLMYQTGIRVGTLSQLENKHVNLENKVLRIDGGILKNHESIHLPFDDVLARVLYALMKQ 219

Query: 252 KETFFINNDKQK---------------MNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
            +        +                      +      A   G    + H +R+  A 
Sbjct: 220 NDIIRKECRVKNDYLFITKNGGRIATSPTNNNVTKRLSKHARDYGFKNINPHALRRGFAK 279

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                GA    +    G   +     Y    D+  +   
Sbjct: 280 NLLKKGANIALISKALGHSDLAVTTRYLH-LDKEEVAES 317


>gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 122/380 (32%), Gaps = 60/380 (15%)

Query: 11  VTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKRE--YINSPRK 66
           + +   ++G+  Y F    G  +           F     + +     + +    N+   
Sbjct: 4   IKEIVLKNGEKRYQFNVYLGIDKVTGQKKRTTRRFNKKRDAEIELRKLQLQGLENNTQSI 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T + +   + ++     +   +  S ES F  +I+ K G    ++I+  + ++ V  
Sbjct: 64  HKYTYEDIYLMWIENHR-TEIRGTTLASKESKFKSRILPKFGRIPIKEISRVYCQTVVNE 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDM 179
                 +   ++   R++F +A++ E +  NP   +  P R  +        +  TKE++
Sbjct: 123 WSKEMKAFNDYVIQARLVFNYAMKLELIDKNPMEYITLPSRLEDKVFVEQSRKFLTKEEL 182

Query: 180 QQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQN----------------NI 221
           +QF  +  E ++ +    F L  ++G+R  +        +                    
Sbjct: 183 KQFMIYLEEENKTQNTCLFRLLAFTGMRKGEVLALHWSDINFVNKDLYVKKTLAKVNNKH 242

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP-------------------------IGKETFF 256
                +   +   +++ +  +  L                                    
Sbjct: 243 VLQPPKTRESQRWIDIDNQTISKLLQWKEEQKLQYEEYGFSVASDKEQPIFSTYHTRLNE 302

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +   +      +   +FK  +    ++   HG R   A++  ++GAT  E+    G   +
Sbjct: 303 MKYMRVSTPNDKLEAFFKRHSDLHKIHV--HGFRHTHASLLFESGATLKEVQTRLGHSDI 360

Query: 317 DQAE-TYTKG--ADRIRLGI 333
                 YT    + R +L  
Sbjct: 361 KTTMDIYTHITQSSREKLAD 380


>gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 191

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
            L++        F  +   + +   +     K  A K  ++    S H VR   AT   +
Sbjct: 85  NLISKEKESDWLFPGDKPNKPITRQRVGQLMKELARKCNIDENKISPHVVRHSFATHLLN 144

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI---RLGIKN 335
           +GA    +    G   +   + YT  A+     +L   +
Sbjct: 145 SGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSH 183


>gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 431

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/416 (11%), Positives = 101/416 (24%), Gaps = 72/416 (17%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M     LP  ++T    + GK    F      G+R R     +     A  +        
Sbjct: 1   MKMKSSLPFKYITAV--KGGKHYVVFDYKDNEGKRKRKWIGTDLPEKCAKKALNLKVEEI 58

Query: 58  ------------------REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
                             ++               + ++ ++     +A  +  S+    
Sbjct: 59  VTAFYEDYMNGKLFKKAQQKAKEKLTAGDYKFTVFLRDWLETIKPT-IAETTYESYSQKL 117

Query: 100 ----DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY 152
                       D    ++T   ++     +     T ++   +  ++    K+AV+   
Sbjct: 118 NSVVRYFDTVFPDITLAEVTAVELQKFYNDKFAEGITANTIKHYHANIHKALKYAVKIGL 177

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           V+ N     +RPK        +      +       G +  +      Y GLR S+    
Sbjct: 178 VSCNESEKTDRPKLDKYEA-TFYNSKELERLFSVFRGDRMEVVVLIAAYYGLRRSEIIGL 236

Query: 213 GVQHLQNNIFSIKTQ---------------------KTGTIITVELPDGFMKLLA----- 246
               +  +  +I                           +  T+ L      +L      
Sbjct: 237 RWDAIDFDNNTITIHAKAYNVYEDGKLVVKFENKLKTKASHRTLPLIPYIADVLRAKKEQ 296

Query: 247 -----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                           ++    +   + +     +  F     K  + K   H +R   A
Sbjct: 297 DEYRSTVLKSGYDHEYEDYICTDEFGRLITPNYVTDHFANVIKKYKLKKIRFHDLRHSCA 356

Query: 295 TISADAGATAHELMATYGWKTVDQAET-YTK-GADRIRLGIKNSRRISSVVDSDDP 348
           ++    G     +    G  T       Y+    +           I      + P
Sbjct: 357 SLLLANGVPMKAIQEWLGHSTFHVTADFYSHLDFNSKIDSANTIANILGGGAVERP 412


>gi|169833903|ref|YP_001693494.1| integrase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996405|gb|ACA37017.1| integrase [Streptococcus pneumoniae Hungary19A-6]
          Length = 380

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 102/361 (28%), Gaps = 52/361 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +GK  Y+ R       +L                     L     ++           T 
Sbjct: 8   NGKFKYFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKIKQKLGEKQHSVSNITF 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP 130
           + L  E+ ++     +  ++  + ++   +I+++  GD+  R I  + ++  ++      
Sbjct: 68  EKLYEEFEENWK-HGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLLQDG 126

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP---------------KRKTEGIR 172
            S          +  + K+A+R  Y+  N  L VE P                   +  +
Sbjct: 127 RSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEFK 186

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
            + +    +    +      R+A    L +G+R  +      +   +             
Sbjct: 187 LFIQNLKDEALCDYRITKYIRIAKVLFL-TGMRYGELAALNYKEDIDFSKKTIHIKHTYD 245

Query: 228 KTGTIITVELPDGFMKLLAMTP-----------------IGKETFFINNDKQKMNATQFS 270
                 T        +++                        +  FIN   + +   +  
Sbjct: 246 FRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIENATNGFDTDFIFINTLGEPITNARVI 305

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              K    K G+ K  + H  R    ++ A+ G     +M   G        E Y+    
Sbjct: 306 CALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQ 365

Query: 328 R 328
           +
Sbjct: 366 K 366


>gi|293378960|ref|ZP_06625115.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292642501|gb|EFF60656.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 346

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 92/327 (28%), Gaps = 30/327 (9%)

Query: 17  RHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK        ++ G  +++   +P +      +   +  +  + + +     + TT  
Sbjct: 6   KRGKSYRAQISLYKYGEHKKLTKTFPTKKE-AKLWALEMELAKGEGKELA---HRTTTFA 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +        +   +  ++      I     D   + +    ++  ++     H+ 
Sbjct: 62  DFFENWIYLVKVNDVKETTFQNYVRTLGVIRNLFQDIQLKDLNDIVVQKKIDEYAKTHSR 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187
            +  + L  ++   + A  + Y+A +    V+               T     +      
Sbjct: 122 KTTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGENPPKRNKALSITDFRKLRNYVLQH 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVE 236
              +  L     L +G+R  +      + L      ++            +       V 
Sbjct: 182 PEDEFNLLVLLALETGMRRGELLAIRPESLYEYGIKVRHSISPTSDDTSLKTQNAKRDVS 241

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
           +     +L+   P+ +  +  +    K +             K  + K+  HG+R   A+
Sbjct: 242 INKEVYELIRKIPVKENGYIFSFGGFKQSEQ-----LAELLKKLDIKKTTFHGLRDTHAS 296

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
                      +    G   +   + Y
Sbjct: 297 FLFSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
 gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC
           29176]
          Length = 411

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/412 (10%), Positives = 100/412 (24%), Gaps = 78/412 (18%)

Query: 4   SLRLPPFVTKE----RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
              L   V ++    R   G+ +Y +    GRR  +      T        +       +
Sbjct: 5   RKDLRGRVLRKGESQRRSDGRYVYTYTDPLGRRKYVYTQDLVTLREKEAQLMKDQMDGLD 64

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKH 118
              + +    T+ ++   Y       +L   ++ ++   +D+      G  +  +I    
Sbjct: 65  IYVAGKA---TINFVFDRYMSLK--NNLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSD 119

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTE 169
           +              I  L ++  L              R+           +    KT 
Sbjct: 120 VVQFYNHLIEKQELKINTLETIHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTG 179

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNN------ 220
                T    + F  + +        +      L +G R  +      + +         
Sbjct: 180 VRHALTIPQQRAFMEYIATHPIYFHWWPIFTIFLGTGCRIGEVLGLRWEDINYEKRIISI 239

Query: 221 ----------------IFSIKTQKTGTIITVELPDGFMKLLAMTPI-------------- 250
                                 +    + T+ + D       M                 
Sbjct: 240 NHNLTYYPVGEDRASENHISTPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDG 299

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFS 293
                F N     MNA   +   K  ++                     + SAH +R   
Sbjct: 300 MTGFVFCNRYGNIMNAQSVNRAIKRISSAYNATEEVEAKKEHREPVLLPDFSAHSLRHTF 359

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            T   +       + +  G K +      Y +  +  +   +    +++ +D
Sbjct: 360 CTRLCERETNLKIIQSIMGHKDIQTTMDIYAEATEEKK--QETFEHLAATMD 409


>gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii]
 gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii]
          Length = 325

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 75/299 (25%), Gaps = 51/299 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
                  +   +        +      +        +  ++Q+        ++ ++ F  
Sbjct: 71  IALNALAFLYNRFLQQPLGDIDYIPASKPRRLPSVISANEVQRILQVM--DTRNQVIFAL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------------------- 227
           L  +GLR ++  R  V+    +   I                                  
Sbjct: 129 LYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLISAIKQLIEQARLIQ 188

Query: 228 ------------KTGTIITVELPDGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIW 272
                                        + + P         N    +  ++ +     
Sbjct: 189 QDDNLQGVGPSLPFALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKA 248

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            KA   KAG+     + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 249 LKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQ 307


>gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
 gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp.
           MS 92-3]
          Length = 327

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 108/322 (33%), Gaps = 20/322 (6%)

Query: 11  VTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T ++   G+     R    +G+RIR     + +   A+      +   +E+++ P  K 
Sbjct: 1   MTIKKLDDGRYEVDIRPAGRNGKRIR-RKFDKKSEAVAFEKHTQFNHHTKEWLSKPTDKR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
             L  LI  +                  +  D   R + D    +IT   I     +R+ 
Sbjct: 60  H-LSELIQLWWN---LKGKHEEHGRINRNKLDVFCRITDDPCAFQITKALISQYYAARRS 115

Query: 128 --HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                S+  + L S+  +F   +  + +   +P    ++ K +       T+++++    
Sbjct: 116 QGIKASTINRDLNSISGMFTALIEAELFSGEHPIRGRKKLKEEVPETGYLTEDEIKHLLF 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   +      L +G R  ++ R   +H+  N  +    K+    TV +     KL
Sbjct: 176 K--LDGDNKKIAILCLSTGARWGEAARLKAEHIIQNRVTFVKTKSNKQRTVPVSAEVAKL 233

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +A    G           K + + F    +         ++ H +R   AT     G + 
Sbjct: 234 IADGKRGLLFG-------KASYSDFRQILREVKPDLPTGQATHALRHSFATHFMINGGSI 286

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   ++Q   Y   A
Sbjct: 287 ITLQRILGHARIEQTMAYAHFA 308


>gi|256027818|ref|ZP_05441652.1| hypothetical protein PrD11_07451 [Fusobacterium sp. D11]
 gi|289765771|ref|ZP_06525149.1| predicted protein [Fusobacterium sp. D11]
 gi|289717326|gb|EFD81338.1| predicted protein [Fusobacterium sp. D11]
          Length = 339

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 13/297 (4%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           R  L Y  + +                +       K  T+K +   +        +   +
Sbjct: 40  RKSLGYFRKESEAD------MALYEYAKQKEGFFLKKLTVKDVYDRWIVEHRER-VKETT 92

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
              +ES +   I K  +  + ++ T  ++      + T          + +++++ +R E
Sbjct: 93  MEHYESAYTAYISKIKNKVFSELKTLELQEFFNEIR-TRQIQESVRAVLSLMYQYGMRYE 151

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            V  N    +   K+         K+            ++   A   ++Y+G+R  +   
Sbjct: 152 IVDKNYATLLILKKKIKVKEIIPFKKAEIDNLFT--LDNRIAKALCVMIYTGMRIDEFLS 209

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQF 269
                + NN   ++  KT   I        +K +        KE  +   + +K +   F
Sbjct: 210 LTKNDILNNFIYVREAKTEAGIRPVPIHNRIKPIIDFFLAEKKEYLYTWKENKKASYETF 269

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                    + G   + H  R   A++    GA    L    G   V+  +  YT  
Sbjct: 270 RNNMIKLMKELGTPHTPHDTRHTFASMMNKVGANDVALTTMIGHTDVNLTKSIYTHK 326


>gi|94989099|ref|YP_597200.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94992989|ref|YP_601088.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
 gi|94542607|gb|ABF32656.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 9428.3]
 gi|94546497|gb|ABF36544.1| DNA integration/recombination/inversion protein [Streptococcus
           phage 2096.2]
          Length = 362

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/350 (10%), Positives = 92/350 (26%), Gaps = 27/350 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            ++     +    +R   G++         T   A ++A                   T+
Sbjct: 7   YRKLGSGWEYRITYRDSQGKKREKSKRGFKTKTLAKVAAQQAEIDLNTLTADLLD--ITV 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 +        +   +  ++   F  I    G    + IT    +  +       +
Sbjct: 65  LDYNRRWADIYKRPHITAKTWQTYTKNFKHIEHYFGTRKLKSITHTFYQQVLNDFGAKVA 124

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKS 184
             +  +F   ++   K A+R   +  N          +  K ++E     ++       +
Sbjct: 125 QQTLDKFHYQIKGACKMAIRDGIIRDNFADGAIVRSQKPAKEESEKFMEESEYLAFIKVA 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IFSIKTQKT 229
                    L    +  +GLR ++      + +                       T+  
Sbjct: 185 KSKVKYPSYLTTYIIAVTGLRFAEVQGLTWKDIDFENGYIDINKTFDYSISQNFGPTKNE 244

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +I  V +    +++L                    +   +   K      G N + H +
Sbjct: 245 QSIRKVPIDKNSLEILRNFKSDYYQDNKLGRVCFGASNNATN--KVIKRVTGRNLTNHSL 302

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338
           R   A+     G     +    G + ++   + Y    + ++    +  +
Sbjct: 303 RHTYASYLIAQGVDLISVSKLLGHENLNITLKVYAHQIESLKEKNDHQVK 352


>gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
 gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196]
          Length = 323

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
             +R ++ +     +  +      +   +T  H+ +  +    R  + ++    L ++  
Sbjct: 43  DATRRAYNNALKDFMGFTDITRPDEFRSVTRAHVIAWRDELVKRSLSGTTIRHRLAALSS 102

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWS----EGSQPRLAF 196
           LF++   +  V  NP   V+RP  ++   +         +           +G + R   
Sbjct: 103 LFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALLDAPHSLSLKGKRDRALL 162

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMT---- 248
             LLY  LR  + CR  V+  ++    ++  +     G    + L      L+       
Sbjct: 163 ATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGGKTRYIPLHPAASTLITEYLEAA 222

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
                                  + +         +  ++  G     H +R  +AT + 
Sbjct: 223 GHGAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVREYSSNLGFEIGPHSLRATAATNAL 282

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           D  A   ++    G   +     Y     R
Sbjct: 283 DHQADISKVQEWLGHANISTTRIYDHRRSR 312


>gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1]
 gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1]
          Length = 333

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 72/305 (23%), Gaps = 36/305 (11%)

Query: 65  RKKPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKI 114
           R        L+ ++   +       +  +  S+   F+ +                   +
Sbjct: 2   RAPQIEFPQLVQDFFLRRLVDQRGASARTIESYRDAFELLFSYIEKRTGTSPSTLQMADL 61

Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
               +    +     R ++  +    L ++    ++A  ++  ++     V     K   
Sbjct: 62  DAPLVLDFFDYLETERHNSARTRNVRLAAIHSFMRYAAVRDPASLPITSRVLAIGAKRFD 121

Query: 171 IRPWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                    +Q              G +  +       +G R S+     V  +  +  S
Sbjct: 122 RPVLGYLSREQITAILAAPDRNTWSGRRDAVMLATTYNTGARVSEITALRVSDILADRQS 181

Query: 224 IKTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAK 276
                        + L       L        T              M+ +         
Sbjct: 182 AVHLHGKGRKQRVIPLWKNTASDLRSWLGRINTAPDAPVFPNKAGAPMSRSGVRDRLDRA 241

Query: 277 ATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A        G + S H +R  +A     +G     +    G  +    + Y +    
Sbjct: 242 VAIAEQGCPSLRGQHISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQYLEADLA 301

Query: 329 IRLGI 333
            +  +
Sbjct: 302 AKEAV 306


>gi|315151187|gb|EFT95203.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 396

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 108/346 (31%), Gaps = 45/346 (13%)

Query: 12  TKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
             +++++G   YYFR       +G++I+       T   A  +       + E ++  ++
Sbjct: 6   VIKKSKNGT--YYFRANLGYDANGKKIQKYKSGFKTIKEARTAYSKLLLDEPENLSDEKE 63

Query: 67  KPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                K  + E    + K+     + + +  +  S   +           KI   H++S 
Sbjct: 64  V-MLFKEYVEEIFLPWYKT----QVKIRTYDNRLSAIRKHFSYYDKLPVNKIEPIHVQSW 118

Query: 123 VESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    PS          +    AV       NP   +   K++   +  WTKE+ +
Sbjct: 119 QSKLFTNLKPSYIRNIQGIFSMAMDRAVVLGMATSNPSKIIGNVKKQKTEVEFWTKEEFE 178

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN----------------- 219
           +  S   +    +      L+    +G+R  ++     + +                   
Sbjct: 179 KVISCIYKEDYYQHFQYICLWFLFMTGMRIGEATAIQWEDIDFETGMLKINKTLYYKNLS 238

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
           +   ++ +   +   + L    +  L      ++      F ++ + +            
Sbjct: 239 HYEFVEPKTKASSRFIVLDSDTISELIAWRERQQQVINSSFVMSYNGEPTQKHTVRHTIT 298

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  A V++   H +R   A++    G     +    G + ++  
Sbjct: 299 RFSKLADVHRIKIHALRHSHASLLIQMGENPLIIKDRLGHEDIETT 344


>gi|303327306|ref|ZP_07357748.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863294|gb|EFL86226.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 359

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 103/351 (29%), Gaps = 33/351 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +  HGK I  F K   R                +  +       E    P     T+  
Sbjct: 15  YKDAHGKFI--FEKVGWRSEGYTVQDALDLRGERVRKIRHPELFGEAPPPPLPSGITVDE 72

Query: 74  LISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
             + ++++    +L        ++E     I  + G      ++   I +  +       
Sbjct: 73  AWAVFKRNW-LPNLKDQYVVEKTYEH---HIRPRFGHQYILALSELDIENFKQELLTRGG 128

Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQ 181
                   ++  + L+  + +   A +   V   NP   V       +  R  T ++  Q
Sbjct: 129 KQGTALKAATVAKILSDFKRIVSRAFKWNLVEGRNPLAGVTVKNAFVKRERYLTHKEAGQ 188

Query: 182 FKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239
                     +     +  LY+GLR ++        +  +   ++ +       T  +P 
Sbjct: 189 ILDGLSLVSCKLYHIAKIALYTGLRLNEILNLRGNDINISQGIMRVRDGKAGERTAYIPK 248

Query: 240 GFMKLLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS---------AHG 288
            F K L        + F+      Q++++   S  F       G+N S          H 
Sbjct: 249 NFEKELKNLIPADNSAFLFTGSKGQRLSSNVTSNAFARFMEDTGLNGSTVDSEHKIVFHT 308

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            R    +  A  G     +    G KT+   E Y K +   +       R+
Sbjct: 309 FRHTFCSWLAIEGVPLFTIARLAGHKTISMTERYAKLSPAAQR--DALDRL 357


>gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301]
 gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301]
          Length = 330

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 84/309 (27%), Gaps = 37/309 (11%)

Query: 68  PTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFD--------YRKITTK 117
             TL  LI  +        L  + ++   +   F  ++R +               I   
Sbjct: 3   AVTLPALIQRFFTDRLCTQLEASRHTVAGYRDTFRLLLRYASARRKKPPVNLTVEDIDAD 62

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +   +      R ++  S    L ++R  F++    +   +  C  +     K    R 
Sbjct: 63  LVADFLAHTETARGNSARSRNTRLAAIRSFFRFVAMTDPTWLLHCQRILAMPNKRYVKRA 122

Query: 174 WTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            T          +         G +        + +GLR S+        +         
Sbjct: 123 VTFLDAEEMAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGAHIR 182

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKA 280
              K        L     KLLA      +      F +   ++++        +     A
Sbjct: 183 CMGKGRKERATPLRRETAKLLATWIGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCLTA 242

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                       + H +R  +A      G     +    G + V+  + Y      +R+ 
Sbjct: 243 SRACPSIGTKQVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHA--DMRMK 300

Query: 333 IKNSRRISS 341
            K   R+++
Sbjct: 301 EKALARVAA 309


>gi|281492855|ref|YP_003354835.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281376507|gb|ADA65993.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 394

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/395 (13%), Positives = 122/395 (30%), Gaps = 62/395 (15%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R      S  +       ++         I
Sbjct: 2   NIKEYIKKDGTKVYRTNVYLGVDSLTGKQVRTSVSANSRKMCEIKARQSINNFINNGSTI 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +      + L   + +S     +  NS  S ++Y    I+   G +   KIT   ++
Sbjct: 62  AREKVVFDNFESLALSWFESYKLT-VKANSVRSVKNYLKVYILPALGTYVLPKITPMLLQ 120

Query: 121 SGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           S V       ++A                  L  ++ +  + ++   +  NP   V  PK
Sbjct: 121 SIVNDWSKNANTAEIVNGKREKGKGKNFKVMLNIIKRILDYGMQLGAIKSNPATKVFPPK 180

Query: 166 ---RKTEGIRPWTKEDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              R    I+ +  ++++ F  +        E       +  LL +GLR  ++       
Sbjct: 181 LKVRTVSKIKYFDDKELKMFLEYLESLEPSIENQLYNALYRLLLATGLRIGEALALNWSD 240

Query: 217 LQN--------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF------ 256
           +                       +  G+   + L +  +++LA     +          
Sbjct: 241 IDFSEKLVNVTKTTLQSREVQDSPKTKGSNRIISLDNATLQILANWRKYQNNHNKVIGLS 300

Query: 257 ----INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
                + D Q++          +    A +     HG R   A++  +      E+    
Sbjct: 301 DSVVFSYDGQRLIYESERFRLSSHLKSARLPNIGLHGFRHTHASLLMNNDVNPKEIQERL 360

Query: 312 GWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           G   +    +TY+  A   +   + + + S+++ +
Sbjct: 361 GHSKITTTLDTYSHLAKDKK--KETAEKFSNILKA 393


>gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 75/270 (27%), Gaps = 26/270 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  LI+ + +     +L+       +   + I  + GD    +       +  E R    
Sbjct: 17  LSELIARWFEMYG-KTLSSG--AERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSGE 73

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  K + ++  +  + +  +F    R    +    L+  R  R+ E    +   D 
Sbjct: 74  WNPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVDE 133

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +      + S+ +   +     L +G R S++       +     +    K     TV 
Sbjct: 134 IERLLIACDESRNKDLGVVVRIGLATGARWSEAEGLKQSQVLPGRITFVKTKGKKNRTVP 193

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +      +L        +              F    K    +    +  H +R   A+ 
Sbjct: 194 ISPQLQAMLPKKRGALFSPC---------YEAFDAAIKRAKIELPDGQLTHVLRHTFASH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     L    G   +     Y   A
Sbjct: 245 FMMRGGNILVLQKILGHSDIKMTMRYAHFA 274


>gi|120609104|ref|YP_968782.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
 gi|120587568|gb|ABM31008.1| phage integrase family protein [Acidovorax citrulli AAC00-1]
          Length = 332

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 105/329 (31%), Gaps = 19/329 (5%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
                RK                   + + +     +  +++    + T +   +  YR+
Sbjct: 12  WHAQIRKRGYPSQT-RTFTTRADAERWATIVESEMERGMFVSRTEAEATLVSDAVERYRR 70

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138
                  +   + + ES    ++R  G +    +T+  I    + R     P S I  + 
Sbjct: 71  EVLP---SKRGKAADESRLKTLLRYFGSYKLAALTSTLIAQFRDERLTAVGPQSVIHEIN 127

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            +  + K AV    +A+   L     ++    +G      ++        S  S+  +A 
Sbjct: 128 LLNRVLKAAVMDWGIALPHGLPTTNVRKPAKPKGRERRVSQEEIAAIVAHSSSSELSVAI 187

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKE 253
              + +G+R  +       ++        I   KT    TV L    +  L    P   E
Sbjct: 188 TVAVETGMRRGELAALTWSNVDLIKRTAHIPLTKTDAPRTVPLSSTAVAALQRLLPPHTE 247

Query: 254 TFFINNDKQKMNATQFSIWFKAKAT--KAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
               +     M A       +      +A ++    H +R  + +   + G +  E+ A 
Sbjct: 248 VIGKDRRVFAMQAASMQQALERACQAHRADIHNLRFHDLRHEATSRFFEKGLSMMEVAAI 307

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G KT++  + YT            ++R+
Sbjct: 308 TGHKTLEMLKRYTHL-----RAEDLAKRL 331


>gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB]
 gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB]
          Length = 338

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 84/319 (26%), Gaps = 37/319 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
              +RIR           ++   +      + ++     K   +  L+  +  +     L
Sbjct: 20  RDDKRIR-RQFATKGEAQSFKKFVKDQRQDKPWLGEKTDKRRII-ELVELWFNTHGIT-L 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
           A        +         G+    +   K   S  E R              TP +   
Sbjct: 77  ADG--EKRRTTMAFACEAMGNPLATEFNAKIFASYREQRLSGKITRSSRVKTVTPRTVNL 134

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193
            L   R +F    R +       L   R  + +E    +   +  +      E S+ +  
Sbjct: 135 ELAYFRAMFNELRRLDEWTAANPLENVREFKISESEMAYLTIEEIRTLLAECENSRSKDL 194

Query: 194 -LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R S++       ++         K      V + +     L  +   +
Sbjct: 195 TTIVKICLATGARWSEAEGLKGNQIRAGQIIYVKTKGKKNRAVPITEKLHSDLPSSRKAE 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAHEL 307
             F                 F+    +AG+  +      H +R   A+     G     L
Sbjct: 255 LLFKPCYS-----------AFRKAMQRAGIE-TPAGQLTHVLRHTFASHFMMNGGNILVL 302

Query: 308 MATYGWKTVDQAETYTKGA 326
               G   +     Y+  A
Sbjct: 303 QRILGHTDIKVTMRYSHFA 321


>gi|291084894|ref|YP_003495177.1| gp36 [Mycobacterium phage Ardmore]
 gi|262262730|gb|ACY39918.1| gp36 [Mycobacterium phage Ardmore]
          Length = 372

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 104/368 (28%), Gaps = 42/368 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRI----------RLPYPHESTFIPAYMSALTGSTPKREY 60
           V +   + G   Y      G R           R      +  + A+ +A          
Sbjct: 4   VRERVRKDGTTAYLVSYRFGGRGSAQGALTFDNRKAADAFAAAVDAHGAARALEMHGINP 63

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
                K   T+   I  +        +   +   +E Y  + I    GD    K++ + I
Sbjct: 64  APRGTKSELTVAEWIRHHIDHL--TGVEQYTIDKYEQYLANDIEPNLGDIPLSKLSEEDI 121

Query: 120 RSG---------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                        +   H P +       +      AV +                  + 
Sbjct: 122 ARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPRYLSTNPAAGRRLPRGDAEDD 181

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +  +   +     ++  +F++ +GLR  +      +H+     +I+ ++  
Sbjct: 182 DEIRMLTHAEFDRLRDAVTPHWKMMVQFMVSTGLRWGEVSALQPKHVDLETSTIRVRQAW 241

Query: 231 T-------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAK 276
                           +    D   +LL    +  E  F+N D   +    F    +   
Sbjct: 242 KYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPA 301

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR--IRL 331
             KAG+    + H +R   A+     G     +    G +++    +TYT   DR   R+
Sbjct: 302 VEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRV 360

Query: 332 GIKNSRRI 339
             +    +
Sbjct: 361 AAEFMDGL 368


>gi|6465906|gb|AAF12706.1|AF066865_4 integrase [Lactococcus phage TPW22]
          Length = 355

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 87/338 (25%), Gaps = 38/338 (11%)

Query: 17  RHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + GK  + FR       G  ++                 A      KR   +S      +
Sbjct: 6   KRGKT-WQFRLSYKDNNGEYKKFEKGGYKTKKEAE----AAADEAKKRLNNHSEFDNDIS 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
           L     ++ K      +   +  +++   + I +   D    +IT    ++ +      +
Sbjct: 61  LYDFFEKWAKVYKKPHVTEATWRTYKRTLNLIDKYIKDKPIAEITPTFYQAVLNKMSLLY 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---- 184
              S  +F   ++   K AV ++ ++ N     +   +              ++      
Sbjct: 121 RQESLDKFYFQIKSAMKIAVHEKVISENFADFTKAKSKLAARPVEEKYLHADEYLKLLAI 180

Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                      A      +G+R ++       H+  +   I  Q+T              
Sbjct: 181 AEEKMEYTSYFACYLTAVTGMRFAELLGLTWSHVDFDKKEISIQRTWDYSITNNFAETKN 240

Query: 231 ---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
                           L             +     ++    +   K     AG     H
Sbjct: 241 ESSKRKIPISSKTIKLLKKYKKEYWHENKYDRVIYNLSNNGLNKTIKVI---AGRKVHPH 297

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            +R   A+     G     +    G + ++   + Y  
Sbjct: 298 SLRHSFASYLIYKGIDLLTVSKLLGHENLNVTLKVYAH 335


>gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 95/298 (31%), Gaps = 26/298 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 97  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 156

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R+++ + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 157 KVDDMLLREVSGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 216

Query: 161 VERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++  +     + +       + Q +         R  F F +Y+GL   D      +H+ 
Sbjct: 217 IKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYTGLAFIDVYNLRPEHVL 276

Query: 219 NNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +             T  + +        ++L                      + + + 
Sbjct: 277 EDNNGNLWIVKPREKTNNICNIPLLSIPKQILEKYKDNPYCMDKGTLLPVPCNQKMNSYL 336

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 337 KEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 394


>gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 398

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 113/335 (33%), Gaps = 18/335 (5%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPR 65
           V++   R   ++ Y   G  R I + +  E     A   A+            +     +
Sbjct: 43  VSRREGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQERENK 102

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +   T   L ++ Y   A     +       + Y D I    G      IT   I    +
Sbjct: 103 RMELTFDELFNQHYLPWAKSAKRSWG--KDVQRYRDHIRPAIGQRLLSDITPASILRLQQ 160

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +   +   ++  + +  ++ +F WA RQ   +++P   V+  +      R +T++++++ 
Sbjct: 161 TLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRI 220

Query: 183 KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVEL 237
                  + P  A    L   +GLR  +   A  +H+       +  +T+     I    
Sbjct: 221 FLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLN 280

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
                 +  +       +     KQ M  +     F+    +AG+       H  R   A
Sbjct: 281 SLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRAGIFDKEVCIHTCRHSVA 340

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +    G T +++ A  G ++   ++ Y     + 
Sbjct: 341 ALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQR 375


>gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
 gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC
           29799]
          Length = 381

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/346 (10%), Positives = 87/346 (25%), Gaps = 36/346 (10%)

Query: 14  ERTRHGKIIYYF---RKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + G          +  G+R  +    P +S         L  +      ++      
Sbjct: 12  RKLKSGTWRGQIMDGYRADGKRNIVSFTAPTKSEVQQKIRRYLADTAAGLTTLSRS---- 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            +      ++ +      +  ++  S+      +          +I  +HI S +     
Sbjct: 68  MSFSVWAEQWYQDY-VTQVQPSTYSSYRYTLKLLKAFFDHMVLSEIKPQHINSFMTKLLK 126

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFK 183
              + S   +  + +  +F  A     +  NP    +  + ++     +     +     
Sbjct: 127 EGCSLSKISKCRSMLIQIFDAAENNGLILKNPARKAKAIRTQSTEDTGKDAFSYEEVALL 186

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
             +        +   LL SGLR  +      + +  +   I   K   ++          
Sbjct: 187 KKYLRNDLLGNSIRLLLGSGLRVQELLALRPEDIAEDGSEICVNKAIKMVDGKPTIGPPK 246

Query: 235 ----------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN 283
                      E    +   L         +         +   F   + A   +  G+ 
Sbjct: 247 SKRSCRTVPIPEDYRPYAVYLRTHGGKSYIWTSTRKSLLYSVGTFRNKYYAALKRVPGIR 306

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K   H  R    T          E+    G  TV     Y   +  
Sbjct: 307 KLGPHCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSE 352


>gi|146310433|ref|YP_001175507.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317309|gb|ABP59456.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 387

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 87/357 (24%), Gaps = 52/357 (14%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      +    A                    KP T    
Sbjct: 4   KQRAGTWHCDFVTPGGSRVR-RSLGTADKRQAQELHDQLKAEAWRVDKMGEFKPRTFDEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              +            S    +S            D   IT   I S V +  +      
Sbjct: 63  CVRWLNEKQHKK----SLDDDKSRIGFWRLHFMGMDLSAITEDRILSAVSTMVNRKHRMN 118

Query: 135 ---QFLTSMRV-------------------------LFKWAVRQEYVAINPCLSVERPKR 166
              +  + +R                                  E+  I    +++ P  
Sbjct: 119 WEARRDSLLRRGKPVPEFKDKPAAAATKATHLAFIRALLRCAANEWRWIAKAPNIKCPVP 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           K + IR  TKE+              +    F L +GLR S+        +         
Sbjct: 179 KNKRIRWLTKEEAANLIR--ELPGHMKPVVIFALATGLRRSNITDLEWSQIDMQRKVAWI 236

Query: 227 QKT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                ++  +L      +   T              +   +  +
Sbjct: 237 HPEDAKAGRAIGVALNDSACKVLRDQLGKHNRWVFVHTESSVRPDGTRTKAVRKMRSDAN 296

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++A   +AG+     H +R   A+    +G     L    GW++++  + Y   A
Sbjct: 297 TAWRAALRRAGIENFRFHDLRHTWASWLVQSGVPLSALQEMGGWESIEMVQRYAHLA 353


>gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 79/308 (25%), Gaps = 43/308 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKH 118
           L   +  Y  S      + +++ +++                           R+   + 
Sbjct: 16  LHEWLEYYVPSIKA--CSPHTKRNYKISVTLYAEFLKKVKGILPETLNAECFCREYIMEW 73

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
           I      R  TP++    L+++R   K+   ++   +   L  E    +    R      
Sbjct: 74  IIWMKSDRNCTPATCNVRLSALRAFLKYVANRDMTYMAVFLQAENIPNEKTPKRKVIGLS 133

Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               K  +       + G +       L  + +R ++     + +   +         G 
Sbjct: 134 KKAVKAILSVPNQRTATGFRDFTLMLLLYSTAIRVNELLTLKISNTVMDCSKPHMIVIGK 193

Query: 232 IITV-------ELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKA 277
                      +      + L                         M+A   +   K  A
Sbjct: 194 GRKKRPLPLLSQPVQCLKRYLKKYHPKYNDMDALIFYSKSKGVYAPMSAENVNKMLKKYA 253

Query: 278 TKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
           + A        +N  AH  R   A+   + G    ++    G + +     Y     ++ 
Sbjct: 254 SIAHETCEDVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQE 313

Query: 330 RLGIKNSR 337
              ++   
Sbjct: 314 EKALETLE 321


>gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 431

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 89/290 (30%), Gaps = 29/290 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 KSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFDEYRFFLKKRGLKASTVNSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   +    E    RL
Sbjct: 181 LCWLSRLMFRAVSKRIIRCNPFENAKYEKEEKKIRFLQKSDVMKLMSMRMNDREAELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  SD      +H+Q      ++  K ++   +  +       + +     
Sbjct: 241 MFVFSCFTGLAISDMENLEYKHIQTTADGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQ 300

Query: 251 GKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
            ++                   +  + +             G+    S H  R    T+S
Sbjct: 301 KEQERSEEQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  D+     ++  R+ +   + +
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISEDMDRLIAKQSAKE 408


>gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 351

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 31/257 (12%)

Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           K G    R+I  + +   + S+    + +S      ++   F +  +Q            
Sbjct: 89  KFGASSMREIDEEILSDFLASQTANLSDASKKNHRIALISFFGYIDKQNEEENGNAYRYG 148

Query: 163 RP-----------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
                                  E +  + K   +        G++ RL  + +LY+G+R
Sbjct: 149 IELKNWGGLSGKSGTKLPSYMNKEEVNKFIKAIDEYPFKNPIIGTRNRLIIKIILYTGIR 208

Query: 206 CSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFI 257
             ++    ++ +  +          K      V + +  +K      L      +   F 
Sbjct: 209 VGEAISIKIKDINKDGDAYIIQVRGKGNKPRIVMIKEHIIKDDLSTWLENNCCEENLLFC 268

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N   +K+         +      G+ K     H +R   AT+          +  + G  
Sbjct: 269 NQKNKKLTQAYIGRLVEQILISCGIRKEKNGPHMLRHSFATLLYQNSHDLILVQESLGHA 328

Query: 315 TVDQAETYTKGADRIRL 331
            ++ +  YT   D+ RL
Sbjct: 329 DINTSRIYTH-FDKNRL 344


>gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 407

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 21/280 (7%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL  L  ++          S++V +   +                  D    ++T   I 
Sbjct: 108 TLMQLFEKHNTDIQEQVGVSVSVATLQKYNVCKKHFAAFLYEKYKRNDIRLSELTFTVIH 167

Query: 121 SGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 + T    P++A + + + + +     R + +  +P ++      +       T 
Sbjct: 168 DFDVYLRTTAGQNPNTATKTMKTFKTITILGRRMDVLNHDPFINH-HFHLEPVNRGFLTD 226

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++ +  +      +    R  F F  ++GL   D       ++                
Sbjct: 227 EEIMKIANKDFGIHRLELVRDIFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKT 286

Query: 234 TVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
            VE     + +    +   G +T+        +   + + + K      G+ K  + H  
Sbjct: 287 NVETNVLLLDIPKRIIAKYGHKTYRDGKLLPVLTNQKINAYLKEIGDLCGIKKNLTFHLA 346

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT+S   G     +    G   +   + Y +  ++ 
Sbjct: 347 RHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKK 386


>gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 350

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 90/305 (29%), Gaps = 43/305 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFD--------YRKITTKHIRS 121
           L+  Y  S      + +++ +++      +       G             +   + I  
Sbjct: 18  LLEHYVPSIKA--CSPHTKRNYKISVKLYVEFLRVIKGTTPETLSAECFCMEYIMEWIIW 75

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKED 178
             E+R  +P++    L+++RV  K+   ++   ++  L  E    +    R     +K+ 
Sbjct: 76  LKENRGCSPATCNVRLSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQA 135

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           +    S  ++GS    +       L  + +R ++     + ++  +         G    
Sbjct: 136 VDVLLSMPNQGSTIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRK 195

Query: 235 VELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKA 280
                          + L      +                  M+A   +   K  AT A
Sbjct: 196 KRPIPLLAKPAQCLKRYLIKYHPKQNDANALLFCSKSKGIYVPMSAENVNKMLKKYATMA 255

Query: 281 G-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
                   ++  AH  R   A+   + G    ++    G +++     Y      +    
Sbjct: 256 HERCQDVPMDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQEEKA 315

Query: 333 IKNSR 337
           ++   
Sbjct: 316 LETLE 320


>gi|307330055|ref|ZP_07609206.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
 gi|306884316|gb|EFN15351.1| integrase family protein [Streptomyces violaceusniger Tu 4113]
          Length = 411

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/387 (13%), Positives = 96/387 (24%), Gaps = 64/387 (16%)

Query: 11  VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V  +  R+G   +    +    G      +P             T +   R     P+  
Sbjct: 21  VKVKTERYGTGMRYRARYVGPDGAEKSKSFPDRQKRRAEEWLTETAADMSRGQYVDPKAA 80

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T +     +       +    +RI  E++       + G          HIR  V   
Sbjct: 81  RITFQQYAERWIA---AQTTDPATRILVETHLRLHAFPRIGSRPLGSFRPVHIREFVRDL 137

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +H P   + A      +R +   AV   ++A NPC +           R       Q   
Sbjct: 138 EHAPMAAAYARNIYADVRAVLSAAVDDGHLARNPCSAASVRPPAVSARRVVPWLPSQVRA 197

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
              +   + R   +     GLR  +        +Q +  +++                  
Sbjct: 198 VRNALAERYRAMVDVGSGCGLRQGEILGLADDAVQLDGDTLRVTTQVKLIRGVAVFAPPK 257

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---------------- 272
                 V LP      L           I    +K +                       
Sbjct: 258 GNKDRDVPLPSSVASALRRHMENHPPVGIKLPWRKPDGPLVERRLIFTNRANGIVWRSNF 317

Query: 273 ----FKAKATKAGVNKSA--------------HGVRKFSATISADAGATAHELMATYGWK 314
               +K     +G+  +               H +R F A++  DAG +   +    G  
Sbjct: 318 NIQEWKPALAASGLIPTPAPGKPHASAREHGMHALRHFYASVLLDAGESIKAVSEYLGHS 377

Query: 315 TVDQAET-YTKGA----DRIRLGIKNS 336
                   Y        +R R  +   
Sbjct: 378 DPAMTLRVYAHLMPSSKERARRALDGV 404


>gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 420

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 26/299 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISF------ESYFDQ--IIRKSGDFDYRKITTKHIRS 121
           TL      +  S         ++ ++           +  +++K  D   +++    I  
Sbjct: 109 TLIAAFDYHADSIKARIGRDRAQRTYDRLMEERRCLMRYLVLKKLEDVTLKELDVTFIER 168

Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                        ++A +   +++ +   AV Q ++  +P L+ +            + E
Sbjct: 169 YYAWMLSDGHCGKTTAFKRTQTLKCVLYVAVEQGWIDRHPFLAFKCAPDYK-PRMFLSDE 227

Query: 178 DMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKT 229
           ++Q+  +      + R     F F  ++GL   D       H+            + QKT
Sbjct: 228 EIQRLMNIELRYHRQRAVRDMFIFCCFTGLAYIDLKNLTYDHIVTTPTGEQYIYNRRQKT 287

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
           GT   + L     + +                   +        K  A K G+ K  S H
Sbjct: 288 GTPYHIMLLPIAQEFIERYRGYPGKIDETRVFPVKSRKSMCTTIKRIAQKCGITKNLSTH 347

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
             R    T    + G     +    G K +   + Y K         ++ R ++  + +
Sbjct: 348 IGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANK--MKEDVRLLTQRIGN 404


>gi|282877050|ref|ZP_06285893.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300821|gb|EFA93147.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 389

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 7/258 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           LI   ++      ++  +R   +   D + R         +T+ ++ +  E       S 
Sbjct: 118 LIEYMKEHIEAEDISEGTRKHKQCTLDALKRFGKIQKLTDLTSNNLVAFDEWLHDGTRSD 177

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                +   ++        +  + ++P   V+  + + +   P T+ ++Q+ +    +  
Sbjct: 178 VGIHTYHKHLKKYSHLLYIEGKIGVDPYTQVKFKRGECKEREPLTEAELQKLRKIKLDEK 237

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R  F F  Y+GL   D      +         K               F  +L   
Sbjct: 238 LDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGSRIKTASKFFTPILGPA 295

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
               + +     K         +     A K     + H  R   AT++         + 
Sbjct: 296 MEVLKKYKFVLPKISNQKANDFLHLIETALKLNKPLTFHVARHSFATLALAHDIPIENVS 355

Query: 309 ATYGWKTVDQAETYTKGA 326
              G K +   + Y K  
Sbjct: 356 RMLGHKNIRTTQIYAKVL 373


>gi|239943966|ref|ZP_04695903.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990422|ref|ZP_04711086.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447431|ref|ZP_06586821.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350378|gb|EFE77282.1| traSA:integrase fusion protein [Streptomyces roseosporus NRRL
           15998]
          Length = 372

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 101/358 (28%), Gaps = 43/358 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +  +GK    +R   G+        +             ++        PR      K  
Sbjct: 6   KRPNGKWRARYRDLDGKEH--ARHFDRKIDAQRWIDEVTASLVTGQYVDPRSAKKPFKEY 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
             E+R          ++  +   +    +           I    ++S V S   T    
Sbjct: 64  AEEWRAIQPHR---PSTAKAVAQHLRCYVYPAWEKRALGAIKPGDVQSWVTSLTTTHGLA 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S++     ++  +F+ AVR   +  NPC   + P    + I P   E ++         
Sbjct: 121 ASTSRTVFNTVNAVFRAAVRDRMIPHNPCAEAKLPSVPRKKIVPLAVEQVRTL--SEEIP 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTI 232
           ++ +        +GLR  +     ++H+                  + ++    +   + 
Sbjct: 179 ARYKGLVLLGAATGLRPGELFGLQLRHVDLLHATVSVEQQIQQTAKHGVYVCPPKTARSH 238

Query: 233 ITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
            TV LP   +  +                F        +        ++    KAG+ K 
Sbjct: 239 RTVPLPRMAVDAMKAHLRDFPADGPEGWIFTAPQGGPVVYTHFMDGSWRPACAKAGIAKG 298

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNS 336
              H +R   A++    G +   +    G          YT       +R R  +  +
Sbjct: 299 TGPHALRHHYASLLIKHGESVKTVSERLGHTNAAMTLNIYTHLWPDSEERTRAAVDKA 356


>gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 373

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 122/374 (32%), Gaps = 43/374 (11%)

Query: 11  VTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAY--MSALTGSTPKREYINSP 64
           + +  T  GK+     Y        R++            +     +  +    +Y    
Sbjct: 3   IQQIDTPKGKVWEVNGYLIYNDEKVRVKKRGFDSRKSAHQWFNTELVKFANGDSKYNKKT 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
                T+K L   +  +    ++  ++       F   II + GD     IT   ++  V
Sbjct: 63  TPSVMTVKELYRMWLDTYQ-HTVEESTLNRTMIVFKTHIISEWGDTLVTDITPIKLQRYV 121

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            + +       +     R L   AVR + + ++P   +E PK + +  +P    ++ +FK
Sbjct: 122 NTLQGKLLRYRKVAGYFRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKPKQFMEVDEFK 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------------- 220
                    +     Q        +++G+R  +      QH+  N               
Sbjct: 182 AFVDVLDNQYKYMNQQAYTLLRLAVFTGMRTEEILALQWQHIDFNGGYISIVQALGRGLA 241

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-----IWF 273
              +  + +   +  T+++ +  M +LA           ++   +             W 
Sbjct: 242 GSTYIKEPKSQTSRRTLKIENKMMVVLADWFEATGYNKSDDYVFQNEGHTLQTIRPNKWL 301

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           ++ + K GV    S H +R   AT++ D GA   ++    G   V      Y+    R  
Sbjct: 302 RSVSDKYGVAVGLSMHKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTKRAS 361

Query: 331 LGIKNSRRISSVVD 344
               N   ++ ++D
Sbjct: 362 DATGNI--LNGLID 373


>gi|237729903|ref|ZP_04560384.1| phage integrase [Citrobacter sp. 30_2]
 gi|226908509|gb|EEH94427.1| phage integrase [Citrobacter sp. 30_2]
          Length = 284

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 94/267 (35%), Gaps = 20/267 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126
           L  L+ +Y K A         + S+ S      + I+ + G+ +  +I  + I + +   
Sbjct: 3   LADLLPDYIKYALIH------KKSYTSDLSKVKNYILPRLGNAELHEINRRDIATYIHGL 56

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               PS+  + L  ++ +F WAV   Y+ ++P   ++  +      R    E+   F   
Sbjct: 57  DGLKPSTRNRHLALLKAVFSWAVEYNYLEVSPAAGIKAFREPASLRRAMEPEEFSVFIRV 116

Query: 186 WSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELP 238
                +        L     ++G+R  ++  A ++ L        ++  K+G    V L 
Sbjct: 117 LKAEIKDENRDTLQLLGLLAFTGMRLGEARSACIEDLNLTRNTLFLRDTKSGDSRLVPLC 176

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATI 296
              M+++    +      +                 K    KAG+   + H +R  + + 
Sbjct: 177 GEAMEIVCAQLMKHGNQGLLFRSAHGTKVAEPRRLMKKICEKAGIVPFTIHELRYTAGSA 236

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
              A    + +    G K +  +E Y 
Sbjct: 237 MLAATRDLYAVKRFLGHKCLSTSERYA 263


>gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
 gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 93/303 (30%), Gaps = 28/303 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITT 116
           K   TL  ++   R           A  +  +++     +           D  + ++T 
Sbjct: 105 KTQMTLMKMLDALRDEVKSRIGIDRAKGTYPAYDFTCRTMREFIETKFKTKDLAFGQLTE 164

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + I        + + +   +   +L  ++   K A ++ +           PK+  +  +
Sbjct: 165 QFIHDYENFILDEKGYAVDTVRHYLAILKKTCKRAYQEGHSERFMFQHYVLPKQTVKTPK 224

Query: 173 PWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             ++E  ++ +       +      R  F F  Y+G+  SD+     ++L          
Sbjct: 225 ALSRESFEKIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTVTRENLYTGEDGKLWL 284

Query: 228 KTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           K             +KLL               +     ++        KA A  AG+ +
Sbjct: 285 KY--RRKKNELRASVKLLPEAVALIEKYHDDSRDTLFPMIHYPSMRNHMKALAVLAGIKE 342

Query: 285 SA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +   H  R   A++   +AG     + +  G   +   + Y +   +     ++  R+  
Sbjct: 343 NLCYHVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKK--LFEDMDRLIE 400

Query: 342 VVD 344
              
Sbjct: 401 ATG 403


>gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
 gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43]
          Length = 366

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 93/346 (26%), Gaps = 30/346 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKWLISEY-RK 80
           Y F     R                 + L           + +      +   +S Y  +
Sbjct: 14  YDFTVRGHRYSGNTGATSRREAERTEARLKDEARAEARARAGQPARGLRIAAAVSRYWLE 73

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK---HTPSSAIQF 136
           +    + A ++          + R  G +     +T + + + V +R+    +P++  + 
Sbjct: 74  AGQHHANADSTL----HDIAWLERHFGKNRLLASLTNQDVSAMVAARRADGVSPATVNRT 129

Query: 137 LTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            T+ +R +   A       +          R+ + +      + +             L 
Sbjct: 130 ATARLRAIITRARDAWDEPVPRIAWKNHLLRERQEVLRELSAEEETALFARLAPGYAELV 189

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
              +L SG R ++      + +  +   I     G           ++ L          
Sbjct: 190 RFSML-SGCRMAECLGLEWRLIDWHGGYIVITGKGDKTRHVPLSDALRALLWPLPRAHAR 248

Query: 256 FINNDKQKMNAT------------QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGA 302
              +  ++ +                +  F     KAG +    H +R   AT    A  
Sbjct: 249 VFTHRIRRGSIHHKRGDIAPVEEEALNSHFARVCKKAGVIGFRFHDLRHTFATRFLRATG 308

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               L    G  +++    Y              RR+ ++  +  P
Sbjct: 309 DMRALQLILGHSSIETTMRYAHVT-----AADAKRRMDAMSATKIP 349


>gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB]
 gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB]
          Length = 327

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 79/305 (25%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R        ++ +   +  +  + I        R++    + + +         +
Sbjct: 14  LLDQVRDKLRLKHYSIRTETQYVQWIRRFILFHDKRHPREMGAGEVEAFLTHLAVEGRVA 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + +     V R K+        T++++             
Sbjct: 74  ASTQNQALSALLFLYRDVLGIQLPWLDQVVRAKQPQRLPVVLTRQEIAALLDRM--SGLH 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    L  +G+R  +  R  V+ +        ++  K        LP   ++ L     
Sbjct: 132 GLMARLLYGTGMRLMECVRLRVKDVDFERAEIVVRDGKGAKDRVTMLPRTLIEPLQDHLR 191

Query: 251 GKETFFINN---------------------------------------------DKQKMN 265
            + T + ++                                              +  ++
Sbjct: 192 WRRTCYEDDLARGKASVYLPNALDRKYPNAETDWAWQYIFPAAGYSIDPRSGVERRHHLD 251

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K     +G+ K  + H  R   AT    +G     +    G   V     YT
Sbjct: 252 EKALQRAVKKALQASGIAKLATPHTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYT 311

Query: 324 KGADR 328
              ++
Sbjct: 312 HVLNK 316


>gi|224503804|ref|ZP_03672111.1| integrase [Listeria monocytogenes FSL R2-561]
          Length = 384

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 94/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLKNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK- 127
             K     + K+   G  + ++   ++  ++Q +   G+      I     +  +     
Sbjct: 58  KFKEFYELFMKTFKEGKSSQSTINLYDLAYNQFVDYFGEKRKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +            +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
              +  S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAK 276
                + + +  ++ L         +   +               + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CNTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
 gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC
           43183]
          Length = 411

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 26/297 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIR---KSGDFDYRKITTKHIRS--- 121
              ++ ++ K       A ++   +E       Q +R      D    ++    I +   
Sbjct: 119 FGEMMEDF-KGRIGTDRAQSTYKQYEVLNKQLKQFLREEYHVEDIPLTELDLPFIEALNF 177

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK  P +    +  +  L + A+ +  +  +P    E  ++     +  T +++ 
Sbjct: 178 FFRVKRKMKPRTVKARIVLLNKLIRLALHRRIITRSPFDGFE-LEKTELKNKSLTNDELD 236

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                  +    R   +  L+   +GL  +D  +   + +                    
Sbjct: 237 LLMKTPLKSGTQRFIRDMFLFSTFTGLAYADLHKLSWKDIITEDDGSLWISAN--RQKSQ 294

Query: 238 PDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
               +KLL +     E +            M+  Q ++  K  A   G+N+  S H  R 
Sbjct: 295 TVFNVKLLNIPIQIMEYYKGLAPDGKVFPSMSLGQVNVGLKRIARNCGINRVLSYHVARY 354

Query: 292 FSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             A+      G     +    G K +   + Y +  +       + +++S+ + +  
Sbjct: 355 TFASQICLSQGVPIESVSRMLGHKHIQTTQRYARLNNEK--IGNDMQQLSARLAAKF 409


>gi|148358224|ref|YP_001249431.1| integrase [Legionella pneumophila str. Corby]
 gi|296105578|ref|YP_003617278.1| hypothetical protein lpa_00108 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148279997|gb|ABQ54085.1| integrase, phage related [Legionella pneumophila str. Corby]
 gi|295647479|gb|ADG23326.1| hypothetical protein lpa_00108 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 407

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 101/346 (29%), Gaps = 30/346 (8%)

Query: 21  IIYYFRKGH-GRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPTTLK 72
            IY ++      +  L +    +   A             G  PK        +   T+ 
Sbjct: 39  WIYRYKINGVTTKFTLGHYPAMSLSNAKRRFLELSQMRREGVDPKTVIQAQEEQDNNTVD 98

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L   +  +     +     +      + II   G      + TK I   +++     + 
Sbjct: 99  KLALNWYTNYIEKHVK-RPLVIKRQIDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGAR 157

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKE-----DMQQF 182
             A + L+S++ +F +AV + Y   NP  ++        +    R  T E      +   
Sbjct: 158 ILANRTLSSIKQMFNYAVSRGYTQFNPASNIRSRDIGGIEKPKERVLTLEEIKALWLFLD 217

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  +Q R+A + LL +G+R  +   A    +             +  ++       
Sbjct: 218 SDLTQMSTQTRIAIKLLLLTGVRTVELRLASWHEIDFEASLWTIPALHSKASIIHKVHLS 277

Query: 243 KL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
           KL       L             +    +         K    K G+   +AH +R+  A
Sbjct: 278 KLAKSLFLQLKPLSHSDYVLTGVDGFHPITENALPRAIKRIQEKLGIPDWTAHDLRRTFA 337

Query: 295 TISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337
           T   +        +    G K      TY +     + R  ++   
Sbjct: 338 TQLGETLQIDPVVIEKCLGHKMPRIMATYNRNEMLPQRREALERWA 383


>gi|254245077|ref|ZP_04938399.1| hypothetical protein PA2G_05963 [Pseudomonas aeruginosa 2192]
 gi|126198455|gb|EAZ62518.1| hypothetical protein PA2G_05963 [Pseudomonas aeruginosa 2192]
          Length = 397

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 87/287 (30%), Gaps = 27/287 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           P     T+   +  + +S     ++ ++   +    + +++   G      +  K ++  
Sbjct: 76  PEASRETVAGFLGRWLESKR-KHVSSSTFEGYRKIVELRLVPALGSAMVVDLKRKAVKDW 134

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +++ K +  +     + +R     A+ +E +  NP       ++    +        ++ 
Sbjct: 135 LDTLKVSNKTLSNIQSCLRSALSDAMEEELIDSNPLAGWTYARKGEVKVDDVDPFSPEEQ 194

Query: 183 K-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------- 231
           +    S   Q R   +F  ++G+R S+        +      ++  +  T          
Sbjct: 195 QAILSSLDGQGRNLVQFAFWTGMRTSELVGLEWGDIDWLRGEVRVTRAMTQAAKGKAEVT 254

Query: 232 -----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATK 279
                   ++L    ++ L               +      ++          +     K
Sbjct: 255 KTTSGRRCIKLLGPALEALKAQKAFTYLANQEVFQNPRTGERWAGDGPIRKTLWVYALKK 314

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
           AGV  +  +  R   A++   AG     +    G       A  Y +
Sbjct: 315 AGVRYRRPYQTRHTYASMMLSAGEHPMWVAQQMGHSDWTMIARIYGR 361


>gi|254252087|ref|ZP_04945405.1| Integrase [Burkholderia dolosa AUO158]
 gi|124894696|gb|EAY68576.1| Integrase [Burkholderia dolosa AUO158]
          Length = 418

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 113/370 (30%), Gaps = 43/370 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +    +  G + + +    +GRR  L      P   +   A    +             
Sbjct: 24  GMYVTVSPTGTVTFRYDYRLNGRRETLTIGRYGPSGISLALAREKLIDAKKAVAQGKSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++          T   +  ++   A    +A +++   +S  D+ I+    +    +I
Sbjct: 84  LEKQREKRRLTAAKTFGEVTEKWLAGAR---MADSTKAMRKSIVDRDILPAFQNRQLNEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TADDLRALCNKVKGRGAPATAVHIRDIVKQVYAFAILHGEKVDNPAEDVGAASIATFVPK 200

Query: 173 -----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
                P     M +     +     RLA   +L + +R S+  +A    +          
Sbjct: 201 DRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFVNATWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           ++        +     + L +                  +  +         + +     
Sbjct: 261 KQRMKGRNPHVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRVTQIVAE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRI 329
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A++ 
Sbjct: 321 RAKAAGLPLEPFTVHDLRRTGSTLLNEVGFNRDWIEKCLAHEDGRSSRSIYNKAEYAEQR 380

Query: 330 RLGIKNSRRI 339
           R  ++    +
Sbjct: 381 RHMLQEWANM 390


>gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7]
 gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7]
          Length = 323

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 84/309 (27%), Gaps = 62/309 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
            I++Y  +      ++ +  ++ S+    I          +    + + ++     R  +
Sbjct: 10  YIADYMLT---RQYSLRTINAYLSWIANFIHFHNKRHPSSMGDSEVEAFLDHIVLKRNMS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +    L ++  L+K  V+ E          +R   + +     T ++++Q        
Sbjct: 67  AKTQCAALNALAFLYKHIVKNELSLNLNFARSKR---QPKLPVVMTPDEVKQLMVH--LS 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIIT-----------VE 236
            +  L    +  SGLR  ++ +  V+ +  +   I+                        
Sbjct: 122 KRYYLIVGLMYGSGLRVMEAVQLRVKDIDFDYKCIQIWNGKGNKHRIVTLATELLPLLRN 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDK----------------------------------- 261
                 + L +    ++   +                                       
Sbjct: 182 QIMQVEEYLRLDLQNEQYAGVWMPNALARKYPSANKSLAWQYLFPSYKLSSDPETGEIRR 241

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              + T      K    +  + K  + H  R   AT    +G+    + A  G   V   
Sbjct: 242 HHFHPTCVRKAVKKALKQTNITKIVTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTT 301

Query: 320 ETYTKGADR 328
           + YT    +
Sbjct: 302 QIYTHVLQQ 310


>gi|320449554|ref|YP_004201650.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
 gi|320149724|gb|ADW21102.1| DNA integration/recombination/inversion protein [Thermus
           scotoductus SA-01]
          Length = 391

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 119/391 (30%), Gaps = 60/391 (15%)

Query: 13  KERTRHGKIIYYFRKGH-------------GRRIRLPY-PHESTFIPAYMSALTGSTPKR 58
           + R + G   YY   G              G+ +++           A +  L     + 
Sbjct: 2   RRRGKGGGSTYYDPHGDRWVAELKWVDELTGKVVKVRRYAPTRKEAEALLGELASQKARG 61

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---------IIRKSGDF 109
             ++  R    TL+    EY +      +  N+                   +    G  
Sbjct: 62  LLLSPTR---LTLREFALEYLRRKEREGVRPNTLRLLRLELGLALPSLRDPGLPDPLGRM 118

Query: 110 DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             +++    IR  V+    ++ P +  + L  ++ LF+ AV  E V  NP   V    R+
Sbjct: 119 PLQRVGPAQIRGVVDGLVGRYAPRTVRKVLGHLKALFREAVHLELVPRNPAEGVRLRLRE 178

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
            E +    + +        +E  + R        LL +GLR  ++     + L  +   +
Sbjct: 179 EEKVARALEPEEVIRLLEEAERGRSREMALLLWLLLSTGLRRGEALALQWRDLDLDRGEV 238

Query: 225 KTQKTGTIITVELPDGFMK-------------------------LLAMTPIGKETFFINN 259
           +  +  T +         K                         L  + P   E  F+  
Sbjct: 239 RVWRAWTKVDGRGAFTTPKTSTARRVVPLPRDLLLRLRAYKEEFLAKLAPEEVEELFLFG 298

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
             +  +   F+ + +  A +AG+ +   H +R   AT++   G     +    G  +   
Sbjct: 299 GDRPFDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPTI 358

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               Y    +  R G      +  ++    P
Sbjct: 359 TLNVYRHLLEEERRGY--VLELGELLGGPRP 387


>gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
 gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855]
          Length = 311

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 52/298 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           L+  +         +  ++  +   F+Q +    D   R +T  H++   E  K  +  S
Sbjct: 2   LVRRWLAEK-----SARTQEEYARDFEQFVEFV-DLPLRYVTLGHLQEYREHLKDGYARS 55

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  + L++++ LF +  +  Y A N   ++  P  + +       E             +
Sbjct: 56  SQKRKLSAVKSLFTFGTKLRYFAHNVGAALSTPSVRNDRAERILSEADLWALLRDERDLR 115

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDG 240
             +       SG R SD      + L++                   K G    V L   
Sbjct: 116 NHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGKTRAVTLYSK 175

Query: 241 FMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKS------ 285
              L+      +E+         +         + +Q     K  A +AGV  +      
Sbjct: 176 VWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGVKLTEKTGSE 235

Query: 286 ------------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                              H  R   A+ +   GA    +  T G ++++  +TY   
Sbjct: 236 GAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHA 293


>gi|306834506|ref|ZP_07467619.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
 gi|304423308|gb|EFM26461.1| phage integrase family integrase/recombinase [Streptococcus bovis
           ATCC 700338]
          Length = 388

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 117/389 (30%), Gaps = 57/389 (14%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYI 61
            + +   + G  +Y            G++ R       +         A+T       Y 
Sbjct: 2   NIKEVIKKDGTKVYRSNVYLGVDSITGKKARTSVTARTKKELKQKAKQAITAFIN-NGYT 60

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +    T K L   +  S    ++ +N+R + E      ++   GD+   K+TT  I+
Sbjct: 61  TKTKTNIRTYKELAYLWWDSCK-NTVKINTRKAVEGQIRVHLLPAFGDYKLEKLTTPIIQ 119

Query: 121 SGVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---E 169
             V    +        +     Q     + + ++AV  + +  NP   V  P++K     
Sbjct: 120 QQVNKWANDYNKGKKGSYKHYNQLHALNKRILQYAVIMQLIPFNPAREVIVPRKKQTEEI 179

Query: 170 GIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            I+   K++++QF  +               + ++ LL +G R  +        +  +  
Sbjct: 180 KIKFLDKQELKQFYDYLDTLDKSKYYNLFDVVLYKTLLATGCRIGEVLALEWSDIDLDNG 239

Query: 223 SI-----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264
            I                      ++      +L +              ++        
Sbjct: 240 YISINKTLNRDDEVNCPKSKAGYRDISIDKATILMLKHYKNRQTIQAWQHKRTETVVFST 299

Query: 265 ------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                 +        +     AGV+  + HG+R   ATI  +AG    +L    G   + 
Sbjct: 300 FVNKYASQPALRRRLERHLKNAGVSYVAFHGLRHTHATIMLNAGIQPKDLQYRLGHSNIS 359

Query: 318 QA-ETYTKGADRIRLGIKNSRRISSVVDS 345
               TY            ++    S ++S
Sbjct: 360 MTLNTYVHVT--KEGAKNSASFFESAINS 386


>gi|312905527|ref|ZP_07764641.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|310631256|gb|EFQ14539.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 349

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 90/325 (27%), Gaps = 25/325 (7%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R            HG+  +L     S       +             + R   TT    
Sbjct: 6   KRGNSYRAQISLYNHGQHKKLTKSFSSKKEATRWALENELEKGNGKQLAER--TTTFADF 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
              +        +   +  +++     + +  GD   + +    ++  ++     H+  +
Sbjct: 64  FENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDKYAETHSRKT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  ++   + A  + Y+A +    V+   +  +           +    +    + 
Sbjct: 124 THEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKLRTYVINHRE 183

Query: 193 R---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVELP 238
               +     L +G+R  +      + L      ++            +   +   + + 
Sbjct: 184 NEFNILVLLALETGMRRGELLGIRPEDLFEYGIHVRRSLSPTSEDTSLKTKNSRRDISIN 243

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
                +L   PI    +F + D  + +A            K  + K+  HG+R   A+  
Sbjct: 244 QEVYDILKSVPIKDNGYFFDPDGFQQSAK-----LARLLKKLDIPKTTFHGLRDTHASFL 298

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
                    +    G   +   + Y
Sbjct: 299 FSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|327202836|gb|AEA37902.1| site-specific recombinase [Streptococcus agalactiae]
          Length = 379

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 111/352 (31%), Gaps = 39/352 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            VT++  + GK  YYF+ G     G+  +       T   A+  A T +  K       +
Sbjct: 8   GVTRD-DKTGKYTYYFKAGVDLATGKPYQERRRGFETAKEAF-EARTRALNKVHQKGGIK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +   S
Sbjct: 66  HTQWTFKQFMDEVFIPNYYATTSPDLERRRQIIFDEFIQYFGKKKPREITTYDVINYRNS 125

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQF 182
              K++ S A   +  +  + K A +   +      S   P     + I  WTK++ Q+ 
Sbjct: 126 LLEKYSNSYARNKMALLNQVLKTAKKYGLIFHEIPTSNISPIPITKKHIDFWTKDEFQKV 185

Query: 183 KSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTG 230
                + S              ++G+R +++     + +          +      ++  
Sbjct: 186 IQSLDKESYFEHFIYTLLWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYINRENW 245

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKA 275
                   +   + + +     +      ++Q                            
Sbjct: 246 ERRNKLKTESSRRTIGLDDNTLKVLKEWKERQEKVDKIPFILSPDGVPYRKRSIRDQILK 305

Query: 276 KATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
            + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 306 YSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1]
 gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1]
          Length = 350

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATNLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|187940137|gb|ACD39269.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 324

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 113/338 (33%), Gaps = 35/338 (10%)

Query: 1   MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  +   LP  + +     G   Y+ R   G+   L   + +  +  Y     G++  
Sbjct: 1   MRPRKKDRHLPMCMFQR----GPSFYFVR--DGKWTNLGRDYRAALLE-YAKLTGGASKD 53

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                           LI            + N+   + +  +++     +F  R++  K
Sbjct: 54  GMI------------DLIDRVMDHIAPYR-SANTITQYRAVAERLKDMFAEFQPREVLPK 100

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+         TP+ A + LT +RV+F  A+    V  NPC+ ++ P  + +  R    +
Sbjct: 101 HVAQVKTHMASTPNMANRTLTVLRVVFAQALEWGEVDSNPCIGIK-PHSEKKRGRYLNDK 159

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++       SE    R  FE    +G R  D     +  + ++  + + QKTG+ + + +
Sbjct: 160 ELLSILDNCSE--YMRCIFELAYLTGQRIGDVLSIKLDDVSDDGIAFQQQKTGSKVLISM 217

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGV-NKSAHGVRK 291
                 ++             N        Q         +K     AGV +   H +R 
Sbjct: 218 TPDLDAVVQRAKALPRPADAKNLICNRKGKQVDYATTRDAWKRAREAAGVTDARIHDLRA 277

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            + T +   G  A       G       + Y +  +  
Sbjct: 278 KALTDAKKQGKDAR---KLGGHTDPRMTDRYIRQREHE 312


>gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
 gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium]
 gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus]
 gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0635]
          Length = 410

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 112/378 (29%), Gaps = 51/378 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K   ++G   Y  +   G      + +           A    +       +  +   
Sbjct: 2   IKKYTKKNGSTAYLVKVYLGVDPLTGKKKTTTKRGFKTQKAAKQEVARLQLLAQEYDLVI 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
           +       +  E+ +     ++  ++ +         I+   G+    KI+  + +  V 
Sbjct: 62  ESNRLFSDIALEWFEQYK-NTVKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVN 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKED 178
                       +     +F++A     +  NP   V RPKR+ +          +TK +
Sbjct: 121 HWFSYYKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAE 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQ-----------------NN 220
           +  F     +   P      +L ++GLR  +      + +                    
Sbjct: 181 VLYFLQIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWK 240

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----------------INNDKQKM 264
           +     +   ++ T+ + +  + +     + ++ FF                   + +  
Sbjct: 241 LAFQTPKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPY 300

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                +        +  +   + HG R    ++  ++GA+  E+    G   V      Y
Sbjct: 301 YLDFLNHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIY 360

Query: 323 TKGADRIRLGIKNSRRIS 340
              +++ +   + + R +
Sbjct: 361 AHVSEQKK--EETADRFA 376


>gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 286

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/259 (8%), Positives = 66/259 (25%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++     + +++ N+   +     Q     G +         +        + P +  
Sbjct: 21  LDDFHDYLEFNNMSSNTIHVYLYAVKQF---LGLYHVISHDNLMLYKCYLMEHYKPQTVN 77

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    +         +   +  +           +        +S          
Sbjct: 78  LRIRALNCYMESLKLSSSKMLMIRIQQKTFLENVISQADYEYLKKCLIRSGNML---YYF 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253
              F+  +G+R S+  +  V+H++     I ++              +  L         
Sbjct: 135 VIRFMAATGVRVSELVQIKVEHVKCGHMDIYSKDNKIRRIYIPKSLRVDALKWLNQIDRV 194

Query: 254 --TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N     +         K       ++ +    H  R   A    +       L 
Sbjct: 195 SGYVFLNRYGDPITPAGIRGQLKKFTVLYDLDPNVVYPHSFRHRFAKNFIENCGDISMLS 254

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y   + 
Sbjct: 255 DILGHESIETTRIYLHRSS 273


>gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
 gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16]
          Length = 352

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 83/312 (26%), Gaps = 47/312 (15%)

Query: 71  LKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----------- 117
           +   ++E+ +       + +  ++ ++E+     +        ++I+ K           
Sbjct: 11  IAKYLNEWLEYHVPSIKACSPYTKRNYETSVALYVMFL--RSVKQISPKTLSAQCFSLEN 68

Query: 118 ---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-- 172
               I    E R  +P++    L+++R   K+   ++   +   L  E    +    R  
Sbjct: 69  MNEWILWLKEHRSCSPATCNVRLSALRAFLKYMADKDIAFMTSYLQAETVPNQKTPKRKV 128

Query: 173 -----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                                G +       L  + +R ++     + ++  +    +  
Sbjct: 129 VGLSKMAVNALFTVPNQRTIRGLRDYTLMLTLYSTAVRINELLSLKIGNIFTDGPKPRII 188

Query: 228 KTGTIITVELP-------DGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWF 273
             G                   + LA                        M+A   +   
Sbjct: 189 VIGKGRKKRPIPLLAKPVQYIKQYLAECHPNPNNPDALLFYSKSRGIYVPMSAENVNKLL 248

Query: 274 KAK-------ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-G 325
           K           +  +N  AH  R   A+   + G    ++    G + +     Y    
Sbjct: 249 KRYAAIAKKICKEVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDIT 308

Query: 326 ADRIRLGIKNSR 337
            ++    ++   
Sbjct: 309 TEQESKALETLE 320


>gi|229188211|ref|ZP_04315287.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
 gi|228595231|gb|EEK52975.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BGSC 6E1]
          Length = 382

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 97/356 (27%), Gaps = 44/356 (12%)

Query: 14  ERTRH-GKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + RH GK  + F         + R               A+     K            
Sbjct: 11  RKNRHTGKWDFVFNIAKDSITGKRRQIRRRGFRTKREAHDAMLILKAKMLSGERSDLSKL 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T    + E+ K   +  L   +    ++Y  + I  + G F  R+I   H++  V     
Sbjct: 71  TYAAYVDEWMKERTFH-LQETTYEIHKTYIANVIKPRLGHFQMREIEPIHMQKFVNELAI 129

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFK 183
              ++P++       +    K A   + +  NP + +  PK +    I  WT E++  F 
Sbjct: 130 DIGYSPATVHLIYRIVSASLKKAKVLKLIDENPTIGITLPKLRKTSEINVWTLEEVNHFI 189

Query: 184 S---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
           +        ++  +     L +G+R  +      + +      I  ++T T         
Sbjct: 190 NEGKNVYRSTRMYICCVIALLTGMRQGEIMGLRWKDIDFENRIIYIRQTLTQSGKIKVGA 249

Query: 232 -------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                               +  E                           +      I 
Sbjct: 250 KNNASIRNVHFPIKLIGELELHRETVKKERLYHGKDYEDNNLVICARKGNPLIPKNGRIE 309

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           F     K G+ K   H +R   AT+          +    G   +     TY+   
Sbjct: 310 FYNLTEKLGLPKIRFHDLRHTHATMLIQQNVNVKLISERLGHTDIQTTLNTYSHVL 365


>gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
 gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A]
 gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112]
          Length = 297

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 27/265 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHT 129
                + K      L+ N+ +S++   +Q    +   G  D++++    +   + S +  
Sbjct: 6   AAFLAFLKDK--RQLSDNTLMSYQRDLEQTVTYLEDRGIDDWQQVDHYLLIDLLNSLRQQ 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               S+  + ++S+R  +K+ +R     +     +  +    +       T+++++Q  +
Sbjct: 64  GKANSTINRVISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLA 123

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD 239
                   G + R   E +  +G+R S+     +  L  ++     T K      + L  
Sbjct: 124 VPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQ 183

Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
             +K L                +   F+N     +         K   ++A + K  +  
Sbjct: 184 PAVKWLTGYLNRGRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQ 243

Query: 288 GVRKFSATISADAGATAHELMATYG 312
            +R   A    + GA    +    G
Sbjct: 244 TMRYSFAVHLIENGADVQLIQEILG 268


>gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075]
 gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075]
          Length = 325

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 34/284 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
                Y        +   +R ++     Q+        G   + ++    +R+ +  R  
Sbjct: 15  QAFDRYLAEGA--GVMPRTRQAYARDARQLAEFIAVKRGGKPWGQVDADDVRAWLAERLR 72

Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----- 181
           T   ++  + L + R  F++  R   V  NP    + PK + +     + ++        
Sbjct: 73  TSARATVGRKLAAARAWFEFLRRAGLVESNPARLAQPPKLEKKLPARLSVDEAFHLVDGP 132

Query: 182 ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG 230
                         +   +     E L  SGLR  +        L+ +  +  ++  K G
Sbjct: 133 NRPRPGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLDLGVARVRQGKGG 192

Query: 231 TIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               V +     + L                  F+NN   +++         A      +
Sbjct: 193 KERVVPVGAKAAQALERYLAARPALLAGEAAALFLNNAGGRLSVRGVQKIVAANQDGLAI 252

Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +    H +R   AT   + GA    +    G  ++   + Y  
Sbjct: 253 GRRIGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLH 296


>gi|294010973|ref|YP_003544433.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292674303|dbj|BAI95821.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 390

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 97/361 (26%), Gaps = 54/361 (14%)

Query: 20  KIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           K  +        G+R    +  +     A     T +   ++  ++P  +  T+      
Sbjct: 17  KTAWQVDYKDAAGKRRSKQFTRKK---DAEAWLTTAAYQVQQGTHTPDSQSITVAKAAEL 73

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAI 134
           + K     +L  ++  ++  +    I+   GD    +IT        +      S   A 
Sbjct: 74  WIKRGERENLEASTLAAYGQHVRLHIVPLCGDKKLSQITRPMAEGWRDDLMEKLSRPMAS 133

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----DMQQFKSFWSEGS 190
           + L S+  +   A  + YVA N    V+  + K E  +               +  S   
Sbjct: 134 RVLRSLTAIVSEAQGRGYVAQNVVAGVKMRRAKREKPKVVIPTKAELKAIIAAAKASAEP 193

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTIITVEL 237
                    +++GLR S+      + +                      +      T+ L
Sbjct: 194 MAYPLALIAIFAGLRASELRGLPWRCIDLKAATVTVDQRADVKNVIGPPKSEAGYRTIPL 253

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGV--------- 282
           P   +  L    +             +     S  F            AG+         
Sbjct: 254 PASAIAALTAWKLACPPTDDGLVFPSLAKRVMSHMFMNVNIMGAVQLAAGIADPMMKDGK 313

Query: 283 -------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                          + H  R  +A++  +       +    G  ++    +TY    D+
Sbjct: 314 LALDKDQQPVVAQRYTLHDFRHAAASLWIEQRVNPKRVQKWMGHSSIQVTFDTYGHLFDQ 373

Query: 329 I 329
            
Sbjct: 374 A 374


>gi|302537732|ref|ZP_07290074.1| predicted protein [Streptomyces sp. C]
 gi|302446627|gb|EFL18443.1| predicted protein [Streptomyces sp. C]
          Length = 415

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 109/393 (27%), Gaps = 64/393 (16%)

Query: 4   SLRLPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
             + P    +ERT R+GK    +R      +R           A++    G+  +R    
Sbjct: 12  KKKDPVTGKRERTARYGKGS-RYRVAGIPGVRGMSFDTLEDAKAWLR-RAGTDSERGEFV 69

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRS 121
            PR    T+   I+ + + A     A  +     E     ++   GD   R +T   +R 
Sbjct: 70  DPRDGSITVADYIARHWQ-AGVRG-APGTVKRVDERVRLHVLPHLGDVALRDVTASVLRG 127

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +     +  P  A Q LT++  +F+ A+  + +  NP  +      K    +       
Sbjct: 128 YIAMLEAECAPRYARQILTTLSNVFETAIDDKRLVRNPMRAKSVRWPKAPEDQREAWLLE 187

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------- 230
              +   +   + R+A    L  GLR  +        +      I+ ++           
Sbjct: 188 TAQRVRDAINQRYRIAVVVALGCGLRQGEVFGLSPADIDFERGLIRVRRQVQLLYGRLYF 247

Query: 231 ------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------- 271
                     V++P      L    +      +          +                
Sbjct: 248 TLPKGGKTRVVDMPPSVAAELRAHFLQLPAVEVELPWGGPEPDREKRSFPLVLTTTYGNA 307

Query: 272 ---------WFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELM 308
                     +K    KAGV                  H +R   A++  +AG     L 
Sbjct: 308 IRANIFNDEVWKPALAKAGVIPVREKGQRWKASRKDGFHVLRHTYASVILEAGEFVVTLA 367

Query: 309 ATYGWKTVD-QAETYTKGADRI----RLGIKNS 336
              G  +     + Y           R  +   
Sbjct: 368 RWLGHSSPTITLDHYAHFMPEAGGKGRAAVDAL 400


>gi|171741083|ref|ZP_02916890.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
 gi|171276697|gb|EDT44358.1| hypothetical protein BIFDEN_00149 [Bifidobacterium dentium ATCC
           27678]
          Length = 392

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 118/396 (29%), Gaps = 57/396 (14%)

Query: 1   MTPSLRLP---PFVTKER-TRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M P  R+P       +      G+ +     R   G   +L      +   A +      
Sbjct: 1   MMPRPRIPIGQHGTFRYTHNEGGQWVAHCRMRMNDGSFRQLERS-APSKERARILLEEYC 59

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              +       +  TTL  L   +  +      A N+  ++ + + + + +       + 
Sbjct: 60  QQLKRRTFGAIEPNTTLGDLAGLWLATQ--TGKAENTINAYTNAYRKYVSRLDSLTIAEA 117

Query: 115 TTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +++ ++       SA        +  + + AV Q  +  NP   ++R  R  EG  
Sbjct: 118 TPLVLQTFLDGVAGGSGSATVSMVKLVLSGMMEMAVAQGAILHNPVRDLKRMSRHREGSV 177

Query: 173 PWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------- 219
               + +Q+F        W            +LY+GLR  ++C      +          
Sbjct: 178 AIPADKVQKFLKAVETNEWLVSHDEADIIRLMLYTGLRVGEACGLCWDCVDFTAGTLSVE 237

Query: 220 ----------NIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKET 254
                            +   +  T+  P   M +L                     +  
Sbjct: 238 RIAIRCKGEGMTLQAHPKTEHSRRTITAPKSIMHMLELRRISLDTGGIPNPHNLVFPRPL 297

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMAT 310
              + +    +    +   + +    G  K    S H +RK  A++  DAG    ++   
Sbjct: 298 SGGSCEYLVRSPNVVASDLRREREALGFGKGESLSPHSLRKTCASLLHDAGLNTLDVADY 357

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
            G       E  Y     R R   K +  + +++++
Sbjct: 358 LGHSDTATTENVYIA---RGRNSGKAANALETMIEN 390


>gi|144900035|emb|CAM76899.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 368

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/365 (10%), Positives = 90/365 (24%), Gaps = 38/365 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           + K     GK  +         + R           A++           Y++    +  
Sbjct: 4   IRKRTLPSGKDRWQVDFFDQAGKRRAKLFTRKKDADAFLVTARAQVATGTYVHD--AESI 61

Query: 70  TLKWLISEYRKSAHWGS-----LAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIR 120
           +L      +             +   +   +      +              ++T K + 
Sbjct: 62  SLGEAAQAWLDHCATRRDTGRRMERATFRDYDDKVRLHIKDAEVGITTIKLSRLTRKEVN 121

Query: 121 SGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              +    +  S     + L  +R++   A+    V  N    V+  +      +     
Sbjct: 122 EFRDRLLASGRSEAMVRKVLGVLRLILSHAMDNGQVPGNAAQGVKVLRASRIDQKVAVPS 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFSI 224
                    +   + R         GLR S++     Q +                    
Sbjct: 182 KKDVKTLIDNAVGRLRPLLIVSALCGLRASEARGLRWQDVDFADGYLHIRQRADFYCEIG 241

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKAT 278
           + +      +V      +  L    +      ++            +       FK    
Sbjct: 242 EPKSAAGHRSVPAGPMVLNALREWKLACPKGEMDLVFPANDGSVSDHNNTMRRHFKPLCQ 301

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---GADRIRLGIK 334
           + G+    H +R F+ ++  + G    E+M   G  +V      Y       D  +   +
Sbjct: 302 RHGIQTRWHDLRHFAVSLWIEQGFGIKEVMTFAGHSSVQMTMERYGHMFPSPDHQKAMAQ 361

Query: 335 NSRRI 339
              R+
Sbjct: 362 VEARL 366


>gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
 gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016]
 gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112]
 gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3]
 gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A]
          Length = 297

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 88/256 (34%), Gaps = 25/256 (9%)

Query: 82  AHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQ 135
                L+ N+ +S++   +Q    +   G  D++++    +   + S +      S+  +
Sbjct: 13  KDERQLSDNTLMSYQRDLEQTVTYLEDRGIVDWQQVDHYLLIDLLNSLRQQGKANSTINR 72

Query: 136 FLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG 189
            ++S+R  +K+ +R     +     +  +    +       T+++++Q  +        G
Sbjct: 73  VISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIG 132

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT 248
            + R   E +  +G+R S+     +  L  ++     T K      + L    +K L   
Sbjct: 133 LRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQPAVKWLTDY 192

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                        +   F+N     +         K   ++A + K  +   +R   A  
Sbjct: 193 LDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQTMRYSFAVH 252

Query: 297 SADAGATAHELMATYG 312
             + GA    +    G
Sbjct: 253 LIENGADVQLIQEILG 268


>gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 89/290 (30%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +              G     +++   + S    
Sbjct: 19  QTLRQLAESWLSHLAAAGRSPRTVQGYRERVRALLAWCEPRGITYAPQVSLAVLESYQRW 78

Query: 126 RKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             L+++R+L +W +++ ++  NP   +E PK +         
Sbjct: 79  LQGYRRADGRQLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLELPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           G    V +    +  L               ++    ++     +        AG     
Sbjct: 199 GKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                     H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|307275978|ref|ZP_07557111.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306507308|gb|EFM76445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 382

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 117/375 (31%), Gaps = 43/375 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS----- 63
            +V     + G   + +R  +   ++           +  +A       +  + +     
Sbjct: 11  KYVFSYSNKKG-TFWGYRYPYYNSLKHRKEASKRGFESERAANKALLKIQYDLETQNTSF 69

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI-----TTK 117
              K  T+   I  +   A   + +V+++ + ES     I    G+     +       +
Sbjct: 70  VENKQLTIDEWIKVWIPYAQ-DNWSVSTKQNIESAVKFHISPLIGNQKLSSLNKITYKRE 128

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            I    +  K+T S+   +   +  +   AV  + +  N     +             KE
Sbjct: 129 FIDKLRQENKYTESTIQTWHKIVMRMINAAVHNQIIPSNTLTGFKF-DLSNNVRSFSKKE 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------K 225
             +       E  Q ++ F  LL SG+R  +        +                   K
Sbjct: 188 LQRFVAVLEKEDIQTQVIFLTLLKSGMRKGELMGLRWSDIDLTEKYFDINSTRGDYGENK 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSI 271
            +   +I  V   +  + L+                    K+ F +++    +  ++ + 
Sbjct: 248 PKTKTSIRKVYFDNSLLTLIKKYKNHEKERLFREGIILSDKDYFILSSRNLPIKQSRITY 307

Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DR 328
            F+    KA V N + HG+R   AT   +AGA    +    G K ++   + Y+    + 
Sbjct: 308 MFRLLCEKAEVQNITVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEE 367

Query: 329 IRLGIKNSRRISSVV 343
            +       ++   +
Sbjct: 368 EKETADMMDKLIENL 382


>gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 296

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 25/296 (8%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
              E+     Y  A              R    TL  L++ + K  H  +    ++    
Sbjct: 1   KKTEAVAFERYTIAYASQKE----WAGQRADRRTLSELLNIWWK-YHGQNHEHGTKE--- 52

Query: 97  SYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
             F+ +++     GD    +++ + +      R     + ++  + +  +  +F   ++ 
Sbjct: 53  --FNHLLKTISGIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGMFTKLIQL 110

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           +  +    +    P            E  +  K          L     L +G R ++  
Sbjct: 111 DEFSGQHPI-HGLPPLAEANPEMTFLEKAEIEKLLNVLDGDDLLVALLCLSTGGRWTEVA 169

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                 + N   +    K G   TV         ++     K     +    K++  +F 
Sbjct: 170 TLKPAQITNCRVTFLKTKNGKKRTVP--------ISEELEKKVKEEASAKLFKVDYEKFC 221

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +        N++ H +R   A+     G     L    G  ++ Q   Y   A
Sbjct: 222 GILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLA 277


>gi|220915140|ref|YP_002490444.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952994|gb|ACL63378.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 414

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 97/343 (28%), Gaps = 19/343 (5%)

Query: 10  FVTKERTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKK 67
            + ++  +     Y +F    G+R+       +    A                 +    
Sbjct: 4   HLFRKSCQKNGWYYGWFYGPDGKRVT-RSLRTADRRIARDRLRQFEREAHASGGAASNAA 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           P T++  +  +         A  +   +      ++R  GD     ++   ++  +  R 
Sbjct: 63  PHTVEDTV-RFIVEVGCSDRAEGTLEMYAKKGGHLVRVFGDQQVHALSLDKVQDYINQRL 121

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +   +  + L+++RV  +   +   + +    S+  P R T   R       +  K 
Sbjct: 122 GEGAARETVRKELSTLRVALE-TAKARKLYVGDPRSIFPPFRVTYRPRERHLSVEEFGKL 180

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                ++ R      +YSG R S+          N                      + +
Sbjct: 181 LAVLDAKRRRWIMVAVYSGARRSEVEALRWDTHVNLETGWLVLPGTK---TAKARRSVPI 237

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           L        +                   +     AGV   S + +R+  A+     G  
Sbjct: 238 LQPLADELASDPSKKGFVVEAWANVGRDLRIACAHAGVARVSPNDLRRTFASWMKQQGED 297

Query: 304 AHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
           +  +    G  +    +  Y       RL  +N RR  + + S
Sbjct: 298 SAVVAKLLGHASTRMVDLVYG------RLNDENLRRAVAKLPS 334


>gi|149017859|ref|ZP_01834318.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
 gi|147931423|gb|EDK82401.1| prophage Sa05, site-specific recombinase, phage integrase family
           protein [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 126/386 (32%), Gaps = 64/386 (16%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +          T      +   S 
Sbjct: 3   ITEVIKKDGSKVYRANIYLGVDQVTGKKVKTKVTGRTQ--KEVKQKATQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K +T+K    L + + +S    ++  N++ +      + I+   G +   K+TT  I+
Sbjct: 61  RQKASTIKNYQELANLWLESYK-NTVKPNTQDNVRKLIDNHILPIFGAYKLDKLTTPLIQ 119

Query: 121 SGVESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           S +       +           +     + + ++ V  + +  NP   V  P+   +  R
Sbjct: 120 SIINELADKTNRGEKGAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKR 179

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNI 221
              K    Q    +       +  + R  +E  LY     +G R +++       +  + 
Sbjct: 180 KKVKHFENQELKKFLGYLDNLDSDRYRYYYETTLYKFLLATGCRINEALALSWSDIDLDN 239

Query: 222 FSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI----------- 257
             +   KT                  +++    + +L    + +                
Sbjct: 240 AVVHVTKTLNRDLEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRESVVFS 299

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +   +  ++++     +    +A V     HG R   A++  ++G    EL    G  T+
Sbjct: 300 DFIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTL 359

Query: 317 DQAE-TYTKGADRIRLGIKNSRRISS 341
                 Y+       L  +N+++  S
Sbjct: 360 SMTMDIYSH------LSKENAKKAVS 379


>gi|139438848|ref|ZP_01772308.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
 gi|133775559|gb|EBA39379.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC
           25986]
          Length = 264

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 15/266 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQ 135
           + +       A N+  S+     Q+I K+     + +T + + +  E    +  P +   
Sbjct: 4   FVQYLQEKGYAENTVDSYSFAICQLIDKT-----QSLTNQSLLAHKEWLVSSFAPKTVNN 58

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + ++     +            +  +           + +      +            
Sbjct: 59  RIGAINTYLDFIAFDGIRLKGVRIQQKPFLDNVISNEQYMQLISGLKQDGDWF---WYFI 115

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             FL  +G R S+  +  V+H+      I ++               + L          
Sbjct: 116 VRFLGCTGARVSELRQFKVEHVTAGYMDIVSKGQKLRRIWIPDSLREESLTWKAKPMNGL 175

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311
            F   +   + +   S+  K  A + GV++     H  R   A    +       L    
Sbjct: 176 LFPGKNDNAITSRGISVGLKRAALRYGVDQDVVYPHSFRHLFAKNFINRNPDISLLADLM 235

Query: 312 GWKTVDQAETYTKG-ADRIRLGIKNS 336
           G ++++    Y +  AD  R  +  +
Sbjct: 236 GHESIETTRIYLRRTADEQRAAVDEA 261


>gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 350

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 104/316 (32%), Gaps = 50/316 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV------ 123
           L   +  Y        + +N+  ++ SY    I+   G++   ++TT  I+  +      
Sbjct: 26  LNEWLPMYLDDIS-KEITINTFNNYNSYIFKHILPVLGEYRLTELTTPVIKKYIMDKLTH 84

Query: 124 -------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                  E +  +  +  +  T ++     AV +  +  NPC S+  PK+    +    +
Sbjct: 85  GRIRITGEEKGLSTKTVKEHYTLLKKALDKAVEEGEMYYNPCHSISFPKQIKPEVHALEQ 144

Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------- 221
           E+ ++ +S          +L  +  LY+GLR  + C   ++ +                 
Sbjct: 145 EEQEKLESHIHARFEPNSKLTAKIALYAGLRNGEVCALQIKDIDFENSMISVSKTLYRTK 204

Query: 222 -------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMN 265
                    +   K      V +  G M  L            NN +Q          + 
Sbjct: 205 TASGKTEIMVSKTKNKRQRFVPITKGLMDDLKTYIATMPEEMRNNPEQYVFINQRGKPLE 264

Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
             +    FK    +AG+ +   H +R   AT   + G     +    G  T+   A+ YT
Sbjct: 265 PKRLLCHFKELLKEAGLQDIKFHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYT 324

Query: 324 KGADRIRLGIKNSRRI 339
              +R         ++
Sbjct: 325 HVTNRA--MQNAMSKL 338


>gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10]
 gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30]
 gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10]
          Length = 410

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 112/378 (29%), Gaps = 51/378 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K   ++G   Y  +   G      + +           A    +       +  +   
Sbjct: 2   IKKYTKKNGSTAYLVKVYLGVDPLTGKKKTTTKRGFKTQKAAKQEVARLQLLAQEYDLVI 61

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
           +       +  E+ +     ++  ++ +         I+   G+    KI+  + +  V 
Sbjct: 62  ESNRLFSDIALEWFEQYK-NTVKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVN 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKED 178
                       +     +F++A     +  NP   V RPKR+ +          +TK +
Sbjct: 121 HWYSYYKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAE 180

Query: 179 MQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQ-----------------NN 220
           +  F     +   P      +L ++GLR  +      + +                    
Sbjct: 181 VLYFLQIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWK 240

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----------------INNDKQKM 264
           +     +   ++ T+ + +  + +     + ++ FF                   + +  
Sbjct: 241 LAFQTPKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPY 300

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                +        +  +   + HG R    ++  ++GA+  E+    G   V      Y
Sbjct: 301 YLDFLNHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIY 360

Query: 323 TKGADRIRLGIKNSRRIS 340
              +++ +   + + R +
Sbjct: 361 AHVSEQKK--EETADRFA 376


>gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis]
          Length = 324

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 56/309 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I EY         A+ +  ++  +  Q I        + +T++H+   +       
Sbjct: 6   FLAYIQEYML---ARHYALRTTKAYIYWIHQYILYHDKKHPKSLTSRHVEDFLTHLVIDK 62

Query: 131 SSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             A +  + ++  L           I   +   R  +  +     T E++ +F +  S  
Sbjct: 63  KLAQKTQSLALNALVFLYKEIIQEPIELDMQFRRSDKSRKLPTVMTPEEIGRFFNHCSPN 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            +  L ++ +  SGLR  +  R  +Q +  +  S++  +        V +       + +
Sbjct: 123 FK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKL 180

Query: 248 TPIGKETFFINNDK---------------------------------------------- 261
                  +   +                                                
Sbjct: 181 QQQKSAEYHQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGVLRR 240

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K  + KA + K  S H +R   AT    +GA    +    G   +   
Sbjct: 241 HHIHPTALQKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTT 300

Query: 320 ETYTKGADR 328
           + YT   DR
Sbjct: 301 QIYTHIIDR 309


>gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 364

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/335 (7%), Positives = 70/335 (20%), Gaps = 68/335 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---------------------DYRK 113
           I  Y +       + N+  ++                                       
Sbjct: 24  IERYLRYLTDIERSPNTIKAYAHDLKDWFTFLAGRGPDWTAVQLEDVGAFVSWLRLPMAL 83

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +  +           ++  + L+++   + +A R          + +    +      
Sbjct: 84  RQSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPF 143

Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208
                 +  +S                            +  + R     L  +G+R  +
Sbjct: 144 LHHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSCDRLRDRFLLAVLYDTGMRVGE 203

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTP----- 249
           +       +      I  ++                  ++ EL   +   L         
Sbjct: 204 ALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYLHDEYGDLDS 263

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                  +                 +    + G++   H +R  +AT     G     + 
Sbjct: 264 DYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFDPHWLRHTAATRMLRDGIGLEVVA 323

Query: 309 ATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISS 341
              G   V     TY     +  R  ++ +     
Sbjct: 324 KLLGHANVTTTAATYGHLTVEDARKVLQQAGWFDG 358


>gi|331701817|ref|YP_004398776.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129160|gb|AEB73713.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 401

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 104/368 (28%), Gaps = 51/368 (13%)

Query: 9   PFVTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P V + +T+ GK     + +     +R          +  A ++             +  
Sbjct: 17  PNVYEYQTQRGKKYGIRFTYYDAEHKRREYKKSGFRDWQEAEVALHKFQNDIDNGFVNAL 76

Query: 66  KKPTTLKWLISEYRKSAHWG-----SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               T    +  Y +               +    + YF   +    G+     I+ +  
Sbjct: 77  NNRRT---TVEAYYEVIRKRSVDIGKWRPATIAQKDMYFAKHLKPVFGNMALTDISRQQY 133

Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +  ++S+    +  ++     + M+++   A R + ++ N    +     K         
Sbjct: 134 QHFIDSKVKDGYAKTTISTINSVMQIIMNAAERNDVISKNKLKDISIEGAKEPKPAKLEP 193

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYS---------------------GLRCSDSCRAGVQ 215
           +D Q F     E           L +                     G + +      + 
Sbjct: 194 QDYQLFMKTAREYLSKYWYTLICLLALGARREEISGLRYKSLKFFKQGGQEACEITYDMA 253

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------------D 260
             +      K +   +     +    ++LL  +    +                      
Sbjct: 254 RTRYQEGGGKLKNHASYRKNYVTGELVELLKFSLQYSKNICTQCGRQYNNDSFLFVMEDY 313

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            + ++    +  FK      GV+   H +R + AT++     +  ++M   G  ++   +
Sbjct: 314 GEPIHPEYPNKIFKKVERACGVHVYPHLLRHYFATMARSNNFSPTDIMHWLGHSSLTMTD 373

Query: 321 TYTKGADR 328
           +YT+   +
Sbjct: 374 SYTRPTKQ 381


>gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 374

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 107/359 (29%), Gaps = 41/359 (11%)

Query: 11  VTKERTRHGKIIYY-----FRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +  ++  +GK  +Y     +  G  + +   L    +     A++              +
Sbjct: 1   MYSQKQPNGKYRFYESYEDYMTGKIKYVSCTLDSNSKKNQKEAFVILQNKIEQIYANTLT 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSG 122
            + K  ++  L+  Y  S    ++ +++        + +I   G + +  +++  +I+  
Sbjct: 61  QKPKNISMSKLVELYLISQK-QTVKLSTYNRNCHSCNTLIAIIGAETNVNRLSAAYIQKQ 119

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI----NPCLSVERPKRKTEGIRPWTKED 178
           +      P +  + L  ++ L +W  + + +      N     +    + +    + +  
Sbjct: 120 LLDTGKEPGTLNEHLVRLKALLRWGYKHDLIQSLDFLNKLERFKDVPHRVKIEDKFIESS 179

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236
                    +        +FL  SGLR  ++       +      I   K    I     
Sbjct: 180 DLALLISGMKVDTWIDLTKFLALSGLRFGEAAALLFDDVDIKNRVIHVTKNYDYINHVTT 239

Query: 237 -----------LPDGFMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIW 272
                           + +L                   ++  F +++ + +    ++ +
Sbjct: 240 SPKTLTSLRDVYMQDELAVLCRKLKAASFATFAMQDMNAQKLLFCDSNGEHIKYYAYNKY 299

Query: 273 FKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           F+       G   + H +R   A++  + G     +    G        E Y     + 
Sbjct: 300 FRENTLRVLGKAYTVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITKKK 358


>gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12]
 gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 408

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 94/321 (29%), Gaps = 26/321 (8%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y++A          I   R      K    +Y +     + A  +   +E    +++   
Sbjct: 89  YVTAELVKNAFLGKIARERTLIEFFKQHNEQYLQKVKM-NTADKTYSRYELTKKRLMEFM 147

Query: 107 G------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  D   + I    I         +   + ++A++F+   R +  +A +   +   
Sbjct: 148 KFKYSVSDMLIKDINVVFIEDFLLYIKNNYGCSHNTAMKFVQRFRTVVNFA-KNTGLVTA 206

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAG 213
                 R + +       T E++    +      +    R  F F  Y+ L   D C   
Sbjct: 207 DPFGNYRVRFERTDRDYLTMEEITAIYNHKFSTKRLEQVRDLFVFSCYTALSYIDVCELR 266

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQF 269
            + ++                       ++LL +     E +       K+    +  + 
Sbjct: 267 QEDIRTGFDGNLWI--IRKRHKTNVTSTVRLLDIPKAILEKYKDKLPNGKILPVISNQKM 324

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGA 326
           + + K  A   G+ K  + H  R   AT      G     +    G   +   + Y +  
Sbjct: 325 NDYLKEIAGICGIEKNLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARIT 384

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
           D       +   ++  +D+  
Sbjct: 385 DLK--VSNDMEMLAQKLDATH 403


>gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118]
 gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118]
          Length = 291

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 73/269 (27%), Gaps = 21/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPS 131
           L     +      LA  ++ ++     ++    G           +  +  +     +P 
Sbjct: 11  LRQRMIEDMRLRKLAPKTQSAYVRAVRKLAGFIGRSPDTASAEDLRRFQLHMVDSGASPI 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    +  +   F   + +E V       ++  +         +KE++ +  +       
Sbjct: 71  TLNATIVGLNFFFSITLGREEVM----AKMQSVRVPHRLPVVLSKEEVARLLAAVGHIKH 126

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTP 249
              A      +GLR  +     V  + +   +++    K        L    ++ L    
Sbjct: 127 Q-TALSLAYGTGLRVGEVVALKVSDIDSQRMTLRVEQGKGRKDRYAMLSPVLLERLRCWW 185

Query: 250 IGKETFFINNDKQKMNA----------TQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
                     D   +             Q +      A  A ++K    H +R   AT  
Sbjct: 186 RVARAQGKMLDGGWLFPGLNPIESLGTRQLNRAIHEAALVARIDKRVSMHTLRHSFATHL 245

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
            +       +    G   +D    Y + A
Sbjct: 246 LEQKVDIRVIQVLLGHNRLDTTAQYVQVA 274


>gi|329737804|gb|EGG74040.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU028]
          Length = 349

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 16/334 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           VTK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   VTKRKNKTSSSWQYDVKHPSLKSGKKRKSGFKTKAEATNAAQQLIRDLEDGNNIEDNKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR-- 126
                  ++ K  +   L+      +E          G +   + IT    +  +     
Sbjct: 65  -FVDYYDDWIKIKNKKQLSSKQFYWYERSIKLFSEYFGENMLVKNITRSEYQKFLNQYAQ 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
            HT  +  +    +    + A+   Y+  +P  +V     +      +    ++ +    
Sbjct: 124 GHTDETVRKVHGCLARCIRDALYDGYLKKDPTYNVNIKGTEKAKDEKFKFITIKDYLNLL 183

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             F     +  +    L  +G R SD      + L      I    T T  +    +   
Sbjct: 184 DYFKKRDEESYVLLYLLGITGARYSDVINMTYKDLNKANGIIHLPGTKTKNSKRDVEVNS 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           K +        K    I+     ++ T  S  F+      G+N    + + +R    +  
Sbjct: 244 KDIMHINSKLAKMPRRIDGKLFSVSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYL 303

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              G     +    G  T+ Q  +TY+   +  +
Sbjct: 304 LSKGIPIEYISKRLGHATISQTLDTYSHLLEEHK 337


>gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7]
 gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7]
          Length = 403

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 102/320 (31%), Gaps = 50/320 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
            + +  E+  +    +    +    +    +  +  G     KI T+ I+  +       
Sbjct: 69  FETVAEEWFSTYAEKNYKPKTLERTKQLKARTYKAIGHLRIDKINTRIIQKFINDLGGEG 128

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                  K +P +   + T + ++F +A + + ++ NPC +V  PK        +T E+ 
Sbjct: 129 INIRTGGKLSPKTIKHYSTFISMVFSYAEKMQMISDNPCKNVLLPKIAEHEKEIYTLEET 188

Query: 180 QQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------I 221
           Q   S   E  ++ R      +Y G R  +      + +  N                  
Sbjct: 189 QHLLSLLQEAPTKYRAFLTLAIYGGFRRGELLGLEWKDVDFNTNVVSIRRTALYTKEKGH 248

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNAT 267
           ++   +  G++  ++     + +L +                   +  F   + + M+  
Sbjct: 249 YTDTPKTKGSVRDLKFTADVINILKIHKAEQAKQILKVGDQWNETDRLFTTWNGKVMDGA 308

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               W K    +  +     H +R  +A++   +G     + A  G          Y   
Sbjct: 309 TPYNWLKKLCDRNNLRFLGLHSLRHLNASLLIHSGVNIRTVSACLGHSQTSTTLNIYAHS 368

Query: 326 ADRIRLGIKNSRRISSVVDS 345
                +   N+  + SV D+
Sbjct: 369 -----MAKANAEAMESVADT 383


>gi|167041103|gb|ABZ05864.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_48F7]
          Length = 317

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 85/297 (28%), Gaps = 26/297 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
             ++AL      ++          T +  +  +       + +  +  ++     +  + 
Sbjct: 12  ERLAALRQELGLQDEGTL-----VTFQKAVERFLAHCEARN-SPRTVYTYSDSLKRWQQA 65

Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161
           +G+   +      + + +   +       +    + +++  F WA  +E V     L   
Sbjct: 66  NGNPCVQDYQRSQLDNYIAQERERGLNDRTINHHIRNVQRFFNWAYEEELVDRPFKLKQL 125

Query: 162 --ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQ 215
                  +T              +      S+     R AF    Y+G+R S+       
Sbjct: 126 RAVTVIPQTWSRDQLELMREYIERKLKETDSRRFIVLRRAFFLFRYTGMRASELIHLRWD 185

Query: 216 HLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           H+ +    +++ K               +    F+   A           +  K   + +
Sbjct: 186 HISHQGIWLESNKDWQTKGRADAILPVAKPLRQFLDAEAHNGEVFVCDDGSGGKFWRDYS 245

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                F+    + G+   K  HG R   AT    AG +   +      + +     Y
Sbjct: 246 SAGHSFQKMLDQLGLKGPKVLHGFRATVATELLAAGESPVLVQKLLRHQQLTTTLGY 302


>gi|307276548|ref|ZP_07557666.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|306506658|gb|EFM75810.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
          Length = 349

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 93/325 (28%), Gaps = 25/325 (7%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            R            HG+  +L     S       +             + R   TT    
Sbjct: 6   KRGNSYRAQISLYNHGQHKKLTKSFSSKKEATRWALENELEKGNGKQLAER--TTTFADF 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
              +        +   +  +++     + +  GD   + +    ++  ++     H+  +
Sbjct: 64  FENWIHIIKKNDVKETTFQNYQRTSQVVKKLFGDIQLKDLNDIVVQRKIDKYAETHSRKT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEG 189
             + L  ++   + A  + Y+A +    V+   +  +        T+    +      + 
Sbjct: 124 THEVLLKIKTALRDAYARGYLATDFANLVKTRGKVLDKRNRALSITELKKLRTYVINHQE 183

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVELP 238
           ++  +     L +G+R  +      + L      ++            +   +   + + 
Sbjct: 184 NEFNILVLLALETGMRRGELLGMRPEDLFEYGVHVRRSLSPTSEDTSLKTKNSRRDISIN 243

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
                +L   PI    +F + D  + +A            K  + K+  HG+R   A+  
Sbjct: 244 QEVYDILKSVPIKDNGYFFDPDGFQQSAK-----LARLLKKLDIPKTTFHGLRDTHASFL 298

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
                    +    G   +   + Y
Sbjct: 299 FSQDIDIAYVSKRLGHINIQTTQNY 323


>gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
 gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC
           43183]
          Length = 352

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 91/303 (30%), Gaps = 21/303 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              +  +      S    +   + R+  ++    IS +++     SL  +++ +  S   
Sbjct: 28  KKELELWQQGKRISLELLKDALATRENNSSF---ISFFKQEVSNSSLKDSTKRNHLSTLL 84

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV----RQEYVAIN 156
            +     D  +  +T + + S     +            M+ L +       ++      
Sbjct: 85  LLQEFKRDIVFSDLTFEFVSSFEYFLQQKGYHTNTIAKHMKHLKRHINIAINKEYIEIQK 144

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCR 211
                 + K           E+++Q +         +L     AF F  Y+G+R SD   
Sbjct: 145 YAFRKYKIKTVENKHTHLVPEELEQLERLSLTDKHMKLQKSLDAFLFCCYAGMRYSDFTN 204

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNA 266
              +++ +             +           L         + K    + +  +  + 
Sbjct: 205 LSKKNIVDINQET--WLIYKSVKTGTEVRLPLYLLFAGKGIVILNKYRNNLEDFFRLRDN 262

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +      A  AG+    S H  R  +AT+    G     +    G K+V   + YT 
Sbjct: 263 SNINKDLIIIAKLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 322

Query: 325 GAD 327
             D
Sbjct: 323 IMD 325


>gi|2654007|gb|AAD03774.1| integrase [Mycobacterium phage Ms6]
          Length = 372

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 104/368 (28%), Gaps = 42/368 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRI----------RLPYPHESTFIPAYMSALTGSTPKREY 60
           V +   + G   Y      G R           R      +  + A+ +A          
Sbjct: 4   VRERVRKDGTTAYLVSYRFGGRGSAQGALTFDNRKAADAFAAAVDAHGAARALEMHGINP 63

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
                K   T+   I  +        +   +   +E Y  + I    GD    K++ + I
Sbjct: 64  APRGTKSELTVAEWIRHHIDHL--TGVEQYTIDKYEQYLANDIEPNLGDIPLSKLSEEDI 121

Query: 120 RSG---------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                        +   H P +       +      AV +                  + 
Sbjct: 122 ARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPRYLSTNPASGRRLPRGNAEDD 181

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +  +   +     +L  +F++ +GLR  +      +H+     +I+ ++  
Sbjct: 182 DEIRMLTHAEFDRLRDAVTPHWKLMVQFMVSTGLRWGEVSALQPRHVDLETSTIRVRQAW 241

Query: 231 T-------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAK 276
                           +    D   +LL    +  E  F+N D   +    F    +   
Sbjct: 242 KYSSAGYVLGPPKTKRSRRTVDVPARLLERLDLSNEFVFVNTDGGPVRYPGFLRRVWNPA 301

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR--IRL 331
             KAG+    + H +R   A+     G     +    G +++    +TYT   DR   R+
Sbjct: 302 VEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGHESIQITVDTYT-DVDRTSSRV 360

Query: 332 GIKNSRRI 339
             +    +
Sbjct: 361 AAEFMDGL 368


>gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 426

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 90/317 (28%), Gaps = 32/317 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPR-----KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
             AY      + P        R     K   T K L+  Y +      LA  +  ++ + 
Sbjct: 79  KKAYRQLKDENRPITSQSIKLRYFGKDKAVLTCKDLMD-YHRENELHKLAPGTAKNYNAT 137

Query: 99  FDQIIRKSG------DFDYRKITTKHIRSGVESRKH-------TPSSAIQFLTSMRVLFK 145
              + R         D    +I    I       +         P +    +  +  L K
Sbjct: 138 EKYVSRFLKKEFKSNDIPLAQINYTFIVKFENYLRTCPPLSKSRPLNHNGMMKHLERLQK 197

Query: 146 WAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLL 200
           +     +  ++  NP    +    + +       E         S+ S    R  F F  
Sbjct: 198 FTTLALKHGWLKSNPFALYQLKYEEFDCPFLERDELDSIMLLRISQESIRLVRDVFVFSC 257

Query: 201 YSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           Y+GL   +        + N         ++ QKT T + + + D    +L          
Sbjct: 258 YTGLSYIEVKNLKQCDIVNGIDDEQWIMVRRQKTKTPVKLPVLDEAKAILEKYADYPSEE 317

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYG 312
              +  +  +  + +   K  A    + K  + H  R   AT I+         +    G
Sbjct: 318 NNYSLLRMFSDQKINKHLKKIAELCNIKKNLTFHVARHTFATTIALLNDVPIETVSKMLG 377

Query: 313 WKTVDQAETYTKGADRI 329
              +   + Y +  ++ 
Sbjct: 378 HTKLSTTQKYARVIEKK 394


>gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 16/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R  +  +   +     AL+    K     S   +P  L+ LI  +  +      
Sbjct: 20  RQGKRVRRRFDTKHEAVLFERYALSNKMHKDWLDKSNDIRP--LQDLIDLWWNTF---GK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
           +            +I     +    ++  K +    E R      PS+  +  +++  +F
Sbjct: 75  SNAYGRDTLFRATRIATALDNPPMCQLNDKQLALYRELRLAAGIKPSTINRDFSALSGIF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
               R +       +      ++      +   +  +      +G   ++A    L +G 
Sbjct: 135 TALKRTDLFMGQHPIRGLGRLKQKATEMSYLTSEEIELLLNLLKGDNKKVAILC-LSTGA 193

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  ++ +    H+  N       KTG    V +      ++     G           + 
Sbjct: 194 RWGEAVKLKRDHVIQNKIRFTFTKTGKARIVPISQEVADMICEKKSGMLFP-------RT 246

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   F    K       + ++ H +R   AT     G +   L    G  T+ Q  TY  
Sbjct: 247 SYHMFRRHIKTIKPDMPLGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAH 306

Query: 325 GA 326
            A
Sbjct: 307 FA 308


>gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM
           15897]
          Length = 281

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 85/284 (29%), Gaps = 22/284 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + ++SE+     +   A N+   +       +    D + +++    + +       ++ 
Sbjct: 2   EAVLSEFLNEMKYEEKAPNTVKQYRRACTNFLSSIEDKN-KEVKKDDVMAYKSKMLDEYK 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+    +  +    ++    E +       +E    + + +                + 
Sbjct: 61  PSTINVSIICINKFLRYC-ETESLERGQRSRMEVKTIREQRVSSLEDVLEPGELKRLLKY 119

Query: 190 SQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           S+        L  +   Y+G+RC +      ++       I+T   G +  + L D   K
Sbjct: 120 SRRLGYDDIYLIIKIFAYTGIRCQELKDFTAEN--MKHTIIRTNSKGKVREIILRDDLKK 177

Query: 244 LLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKAGVNKS---AHGVRKFSAT 295
            +               +   N             +  A  A VNK     H  R     
Sbjct: 178 EINQYMKRHGITGGYVFRNDDNDGLIPYQTIYRKLQKVAGAAKVNKRKVHPHSFRHLFGI 237

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    G    EL   YG  +++    Y +     ++  +   R+
Sbjct: 238 VFMQQGGNIDELADIYGHSSLETTRIYLRTT--AKMKKEKMSRL 279


>gi|226950013|ref|YP_002805104.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844233|gb|ACO86899.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 88/287 (30%), Gaps = 14/287 (4%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128
           T K L  EY         +V +  ++   F+  ++  G DF    IT K I +  +    
Sbjct: 12  TFKELKEEYILYLQLNKRSVWTIKTYTEKFNSFLKFIGNDFLCADITEKVIENYKKELLK 71

Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF 185
           T    S    LT +R +F +A ++ Y+       +E  ++      +   +  + +    
Sbjct: 72  TNRETSVNTHLTHLRTIFNFASKRGYMQNVKINKLESQEKIKNVYSKEELERLLLEEPRE 131

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK 243
                Q R+     + +GLR S+     ++ +  +      +  KT     + +      
Sbjct: 132 TFMQYQARVIIATFVSTGLRLSELTSLQIRDVDFHNSVIYSRHTKTKKSRILPISTSLRS 191

Query: 244 LLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
           +L      ++     +     +                      V     H  R+   T 
Sbjct: 192 MLVEWISYRQAENEKDGLFCNSYGKTLKQATLRTLMYRYFDHKNVKSGGIHQFRRTFITY 251

Query: 297 SADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSV 342
           +   G     L    G + +      Y    +R++        +  +
Sbjct: 252 AVQQGVDIISLSRITGHQNLKILNKYYVNSTERVKNLADTVSPLEKL 298


>gi|163816401|ref|ZP_02207767.1| hypothetical protein COPEUT_02590 [Coprococcus eutactus ATCC 27759]
 gi|158448398|gb|EDP25393.1| hypothetical protein COPEUT_02590 [Coprococcus eutactus ATCC 27759]
          Length = 364

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 96/339 (28%), Gaps = 32/339 (9%)

Query: 15  RTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             ++ K  ++  R  +                    AL      +   +       + K 
Sbjct: 3   VIKNNKTGMWEVRTYYKDLTGARKQKTKRGFAKKSEALEWERNFKLKEDQSIS--MSFKS 60

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK----- 127
            +  Y        +  N+ ++ +   + +I+          I T  +             
Sbjct: 61  FVDIYLTDLEPR-IKRNTFLTKKHIIETKILPYFEKRKLDDIRTSDVIQWQNEIMKLKKD 119

Query: 128 ----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQF 182
                +P+        +  +   AV    +  N         ++    +  WT++  Q F
Sbjct: 120 NGELFSPTYLKTIHNQLSAILNHAVNMYGLKDNVARKAGTMGKEENKEMEFWTQDVFQAF 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
               ++      AFE L ++G+R  +              +++  K+             
Sbjct: 180 LECVADKPISYYAFEMLYWTGIREGELLALTPADFNFEKKTLRINKSYQRLEGKDVITHP 239

Query: 233 ------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285
                  T+ +PD     +            ++    ++ +         A  AGV +  
Sbjct: 240 KTPKSNRTIVMPDFLAVEMEDFISSLYGIKDDDRIFTISKSYLHHEMDRGAKLAGVKRIR 299

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            HG+R    ++  + G +A  +  T G + VD    Y  
Sbjct: 300 IHGLRHSHISLLINLGFSALAIGETVGHEAVDITYHYAH 338


>gi|78485177|ref|YP_391102.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78363463|gb|ABB41428.1| Tyrosine recombinase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 341

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 93/316 (29%), Gaps = 17/316 (5%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+      F    G+RI+           A        +      N   K     K  + 
Sbjct: 6   RNNIWWTKFVAPDGKRIQ-RSTGTEQRQQALEFEAKLKSDLWRVHNLGEKPRLLWKEAVV 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
            + +         ++     S F  + R  G     +I   H+   +++R     + ++ 
Sbjct: 65  RFMREKQN---KDSTNEV--SIFKYLDRYFGHLYVDEIRRMHVDEIIQTRLKEGVSNATI 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            + L  +R +   A ++  V  +P   ++  K   + +R   + +  +  +   E     
Sbjct: 120 NRLLQKLRAVLNKAHKEWEVKCDP-PYIKLLKEPKKRVRWLAEPEALRLINALPEYIAD- 177

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTP 249
                 L +GLR S+      + +  +   I  +           V         +    
Sbjct: 178 -MATLALETGLRESNVTLLKWEQIDFSQRIIYIEGDDILKSEQAFVVPLSDTAVEVIKRQ 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
           +GK    +   +        +  FK    + G+ +   H +R   AT     G     L 
Sbjct: 237 VGKHPTRVFTFRGDPIRRANTKAFKNTCAELGIEDFRWHDLRHTWATWHVQRGTPLEVLQ 296

Query: 309 ATYGWKTVDQAETYTK 324
              GW      + Y  
Sbjct: 297 ELGGWTDYKMVKRYAH 312


>gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 403

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 95/310 (30%), Gaps = 47/310 (15%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD--YRKITT 116
                          + ++   A    +A  +   +++  D +I R   + D    ++T 
Sbjct: 76  EGKRNPHAEVLFTDYLQKWLIQAKPT-IAKTTFKGYQTMLDGRISRYFTELDITLAEVTP 134

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +HI+   +S     HTP++ I +   +R   + AV++E +  NP   V+RPK+     + 
Sbjct: 135 QHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIGSNPADRVDRPKKNVYHAQF 194

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           ++ E+M       S+            Y GLR S+        +     +I  +      
Sbjct: 195 YSAEEMMALFDAISDDPLEICVKLAAYY-GLRRSEVLGLKWDAINLEQKTISIKHKVIED 253

Query: 231 ----------------------------------TIITVELPDGFMKLLAMTPIGKETFF 256
                                                  +     +   +      +   
Sbjct: 254 TVDGKSIAVGEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYIC 313

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315
           ++   + M     +  F     KA + K   H +R   A++    G +  ++    G  T
Sbjct: 314 LDQTGKLMRPNYVTDHFSWVLEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHST 373

Query: 316 VDQAE-TYTK 324
                  Y+ 
Sbjct: 374 FSTTADIYSH 383


>gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
 gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135]
          Length = 406

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 21/269 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSS 132
            +       A  + + +E     +           D   + I  + I       K   + 
Sbjct: 123 YRELMNKEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQKNC 182

Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A      +L +++ + K A+ ++++  +P   +   K+         + ++++  +   +
Sbjct: 183 AQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINKDFD 241

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---- 241
             +    R  F F  ++GL  +D      +HL          +     T  + D      
Sbjct: 242 IQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPLLDI 301

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
              +L                   +  + + + K  A   G+ K  S H  R   A+++ 
Sbjct: 302 PRLILEKYQSNPICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHTFASLAI 361

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   +    G   +     Y K  +
Sbjct: 362 ANKVSLESIAKMLGHTDIRTTRIYAKIMN 390


>gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 385

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 126/384 (32%), Gaps = 53/384 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + K + + G   Y F+         G++         T   A +           +    
Sbjct: 4   IKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHGLPT 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           +   T  K +   +       ++  ++ ++ +  F   I+    D+   KI+ K  +  +
Sbjct: 64  KNDNTIFKDIYQLWFTQYK-QTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQKAI 122

Query: 124 ESRKHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQ 181
               +   +    L   +  +  +A+  + ++ NP   V  P  K +   +       + 
Sbjct: 123 NQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKRVIVPVNKNDRSRKNLENYFDKA 182

Query: 182 FKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
               + E         Q  + F    ++G+R S+        +  +  +I+  KT +   
Sbjct: 183 ELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSRGD 242

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETF---------------FINNDKQ 262
                           TV L    +K+L    + ++ +               F N + +
Sbjct: 243 GARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNE 302

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
               ++   W +   TK  +   + H  R   AT++ +A A+   +    G  +     +
Sbjct: 303 MFQPSKPRKWLEHTLTKYDLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLD 362

Query: 321 TYTKGADRIRLGIKNSRRISSVVD 344
            YT    + +   + + ++++ ++
Sbjct: 363 IYTAVTAKQK--NEATEKLANYLN 384


>gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 396

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 104/375 (27%), Gaps = 50/375 (13%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + + G+        +G+R       E+        AL             +K    +   
Sbjct: 29  KRKDGRYEATVPNFNGKRKSFYGATETEAKKKRKEALAQLARGEHVEVDRQK----VGDY 84

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +  Y  S H  ++  ++   +  +     +   G    +K+T + +++            
Sbjct: 85  L-LYWISVHGPTIERSTAQMYGYHIRNHFVPGIGHIALQKLTVEDLQTFFNKLIKEGLQS 143

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSF 185
           ++       ++     A+R E +A NP   V+ PK + +  +        +  +   ++ 
Sbjct: 144 TTIHLLHRILKAALNDAIRWEKIAKNPARYVKLPKEQEKREKRILTAEQAQTFINAAQNA 203

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------- 234
            +EG Q        + + +R  ++       +      I+ + T                
Sbjct: 204 LNEGRQIGAVTLLFMTTAIRIGEALSLHWSEVNFEKKEIRIENTLKYDRENPGFYETGPK 263

Query: 235 --------------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                 +     +L A         F N     M  T      +
Sbjct: 264 SKSSVRRILLSRLALETLSAHRINQVEQRLQASEWEDNNLVFTNPKGGHMWDTTIRYQLR 323

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           +     G+      H +R   +T   +AG +   +    G   +      Y       ++
Sbjct: 324 SFLKGLGLPEDLRPHELRHNVSTALIEAGVSIKTVQEMLGHSKISTTMDIYGHVTP--KM 381

Query: 332 GIKNSRRISSVVDSD 346
               +  I  +   +
Sbjct: 382 KQNAADEIDRMFGEE 396


>gi|308070088|ref|YP_003871693.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
 gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681]
          Length = 358

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 81/252 (32%), Gaps = 18/252 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQ 135
           R +    S +  +  ++ S  ++        +   I    ++        +  + +   Q
Sbjct: 109 RDALVARSYSSKTIKAYISQTERFFAGLQGTE-ASINDAVVQKYALVLLEKGLSHAYVNQ 167

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +++++  F+  ++Q            RPK++++     +  ++        +  + +  
Sbjct: 168 AISALKFYFRHVLKQ-----PKSADYVRPKKESKLPDVLSLNEVMHLLKAV-KNPKHKAI 221

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
                 SGLR S+  R  ++          ++  K        L +    ++      ++
Sbjct: 222 LYLTYTSGLRVSEVVRLRLEDCDRERKVLKVRQGKGRKDRQTLLSEAAFAVVEQYRGVEQ 281

Query: 254 TFFINNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                   Q+             F+    +AG+ K  S H +R   AT   + G     +
Sbjct: 282 PADWLFPGQREGRHLTERSAQKVFEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYI 341

Query: 308 MATYGWKTVDQA 319
               G ++V   
Sbjct: 342 QELLGHQSVRTT 353


>gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
 gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 105/366 (28%), Gaps = 62/366 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             + + +   G     F    G+R    +            A      +  ++ +     
Sbjct: 12  KGIYQRKD--GLYHARFVDKSGKRHEKYFQTVPEAKNWIEEARFADQHEDIFVPTE---- 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT+      + ++   G LA N+  ++   Y   I    G      +   H +  +    
Sbjct: 66  TTVDEWFGFWIENI-VGDLAPNTLRNYRERYAHNIQPVIGRMAISSVKPMHCKKVLLQMD 124

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFK 183
             +  S+  Q   +M  +FK A   + +A +P   V    P R  + I+  T+++   F 
Sbjct: 125 AIYAGSTIRQAYITMGTMFKAAKMNDVIAKHPMDGVRYTKPVRAVDDIKFLTRQEQSLFL 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNIFSIK 225
               + S     +  +L +GLR  +        +                   +   +  
Sbjct: 185 QAAKK-SHNYYQYALILETGLRTGELIGLTWDAVDLEKRTLTVNKTLEFRHGLHTWRAGP 243

Query: 226 TQKTGTIITVELPDGFMKLLAMTP------------------------------IGKETF 255
            +   +  T+ L D   ++L                                  +    F
Sbjct: 244 PKTQHSYRTIPLTDRACEILQSVWNSRDTRKESPLLSQTLEYIDRRTGSIAKLVMRDLVF 303

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                 +    + +         +AG+ +   H +R   AT + ++G     L    G  
Sbjct: 304 INWRTGEPAKNSSYDTHLYKICDEAGIKRFCMHALRHTYATRAIESGIQPKVLQKLLGHA 363

Query: 315 TVDQAE 320
           ++    
Sbjct: 364 SIKTTM 369


>gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3]
 gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3]
          Length = 405

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 26/298 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 93  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 152

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R++  + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 153 KVDDMLLREVNGELVRKFDLYLKAEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 212

Query: 161 VERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++  +     + +       + Q +         R  F F +Y+GL   D      +H+ 
Sbjct: 213 IKFHEVEVNKQFLSQAEINRIWQKEFKIERLELVRDVFIFCVYTGLAFIDVYNLRSEHIS 272

Query: 219 NNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +             T  L +        ++L                      + + + 
Sbjct: 273 EDSNGNLWIVKAREKTNNLCNIPLLSIPKQILDKYKDNPYCLDKGTLLPVPCNQKMNSYL 332

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 333 KEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 390


>gi|293366194|ref|ZP_06612879.1| integrase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319660|gb|EFE60021.1| integrase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 349

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 101/334 (30%), Gaps = 16/334 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           VTK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   VTKRKNKTSSSWQYDVKHPSLKSGKKRKSGFKTKAEATNAAQQFIRDLEDGNNIEDNKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR-- 126
                  ++ K  +   L+      +E          G +   + IT    +  +     
Sbjct: 65  -FVDYYDDWIKIKNKKQLSSKQFYWYERSIKLFSEYFGENMLVKNITRSEYQKFLNQYAQ 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFK 183
            HT  +  +    +    K A+   Y+  +P  +V     +    E  +  T +D     
Sbjct: 124 GHTDETVRKVHGCLARCIKDALYDGYLKKDPTYNVNIKGTEKAKDEKFKFITIKDYLNLL 183

Query: 184 SFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            ++ +  +      +LL  +G R SD      + L      I    T T  +    +   
Sbjct: 184 DYFKKRDEESYVLLYLLGITGARYSDVINMTYKDLNKANGIIHLPGTKTKNSKRDVEVNS 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           K +        K    I+     ++ T  S  F+      G+N    + + +R    +  
Sbjct: 244 KDIMHINSKLAKMPRRIDGKLFSVSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYL 303

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              G     +    G  T+ Q  +TY+   +  +
Sbjct: 304 LSKGIPIEYISKRLGHATISQTLDTYSHLLEEHK 337


>gi|108799889|ref|YP_640086.1| phage integrase [Mycobacterium sp. MCS]
 gi|119868999|ref|YP_938951.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|108770308|gb|ABG09030.1| phage integrase [Mycobacterium sp. MCS]
 gi|119695088|gb|ABL92161.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 379

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 102/377 (27%), Gaps = 45/377 (11%)

Query: 1   MTPSLRLPPFVTKERTRH--GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M         + +       G++ Y      GR+        +         L     + 
Sbjct: 1   MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRK---SVSVYAATAAECRKELKKVRDRI 57

Query: 59  EYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKIT 115
           E     +  P T+   + ++R S          ++  + +   + +   + GD    ++ 
Sbjct: 58  EGGAPAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLK 117

Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              +   +   +      S+  Q  T +R     AVR   +A NP   V+RP    +  +
Sbjct: 118 PSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPASKVKRPGVARKEAK 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---- 228
                D+ +      +G +  L    +  +GLR  +        +      +  +     
Sbjct: 178 YLPAADVARLLDAA-KGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSR 236

Query: 229 -------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---------- 265
                                      +L        +      D+ +            
Sbjct: 237 VDGKLVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGT 296

Query: 266 ---ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                      +  A K G+ +  AH +R  +A    ++G          G  ++    +
Sbjct: 297 LLDPRNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGD 356

Query: 321 TYTKGADR-IRLGIKNS 336
            Y   +D   R  +   
Sbjct: 357 LYGHTSDETARAAVDGL 373


>gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 343

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 24/274 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRS---GVESR 126
            I ++          +  + ++++   ++         D   +     H++        +
Sbjct: 51  YIDQFLAYLIAERGYSPKTSVAYKKELERWALYLREEADASLKAAQKAHVKRYIVWRNKQ 110

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQ 180
             +P S  + L+ +R  +KWA+R+  V  NP   V   K   + +    K+      +  
Sbjct: 111 GISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKALVNDP 170

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL-- 237
           +  +   EG + +L    L   GLR ++       H   +   ++   K      + +  
Sbjct: 171 ELFTTDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKERQIPMPA 230

Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
                          L +             K   N     + F    T + V+K+ H +
Sbjct: 231 LLEEYYLRYVEIRDQLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRTTSVVDKNPHAL 290

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT   +AG   + +    G +++   + YT
Sbjct: 291 RHSYATHLLNAGVDINTVKELLGHESLSSTQVYT 324


>gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 389

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 89/281 (31%), Gaps = 26/281 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHI 119
            TL  L+  + +          A  +  ++        + I+   K  D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     +K    +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKKLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIGKYRDDTRITLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKG 325
            H  R   A++   + G     +    G   +   + Y + 
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARV 386


>gi|313139933|ref|ZP_07802126.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132443|gb|EFR50060.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 425

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 92/355 (25%), Gaps = 50/355 (14%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            R      +T   A           +        KP T+      +        L   + 
Sbjct: 68  RRRATAFGATRAEAERRLNEKIAELQRVGRLGYTKPPTVAEWCDHWLNDICKPHLKPRTW 127

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWA 147
            ++ S  ++ +    G     ++   H R      +E +  +  +A     ++    + A
Sbjct: 128 GTYASVIERNVKPAIGAVRLDELKPAHFRRMERYVMEEQGKSSGTAGSAWRTLHKALEDA 187

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           V +  +  NP +    P+   +     T E      +  ++ +  RL +     +G+R  
Sbjct: 188 VLEGVIERNPAVKGTAPRVALKERAALTPEQAADLIAAETDDT-WRLMWMLAFMTGMRQG 246

Query: 208 DSC-----------------------------------RAGVQHLQNNIFSIKTQKTGTI 232
           +                                           L N ++  + +     
Sbjct: 247 ERLGLTEDELRRDGDRLIILVEWQAQHLTKREVEGLPKGVECTPLGNGMYRTRPKTEKGR 306

Query: 233 ITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             + LP+     L               F ++    +        +     + G+     
Sbjct: 307 RAIPLPEALADQLLAHIERHGVNGDGLVFHDDRGLPLTGCVERRRWYRALDRVGLGHEYV 366

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSRR 338
            H  R  +ATI    G       A  G   V    E YT    DR+        R
Sbjct: 367 PHSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVER 421


>gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +        +        ++ G  
Sbjct: 15  DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +                  +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K +  + R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQI 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + +    +  
Sbjct: 313 YTQVSIKALQAVHA 326


>gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 419

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 91/307 (29%), Gaps = 20/307 (6%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYF 99
              +    +  +   +  +     +  TL      + ++       +   +S   + + +
Sbjct: 93  AEQSANREVVTAEEVKHQLLGMASEQETLLSYFRLFMRNFEKRVGINRTESSLNGYRNSY 152

Query: 100 DQIIRKS------GDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVR 149
           D ++R         D  +  +    I       +      P + +     ++ +   A+ 
Sbjct: 153 DHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIA 212

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCS 207
              +   P +  E    + E     T+E  +   +     +    R  F F  Y+G+  S
Sbjct: 213 DGIITAFPFVGYEPTHPQPEQKYLTTEELNRIMTTPLHSRTLYHVRDLFLFSCYTGIPYS 272

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMN 265
           D C    ++L      I   ++    T    +  +  L +  I K        K     +
Sbjct: 273 DMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPEGKLLPMYS 332

Query: 266 ATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETY 322
            +  + + K  A   G+ +    H  R   AT      G     +    G   +   + Y
Sbjct: 333 NSSLNHYLKQIAVLCGIERKLVFHTARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLY 392

Query: 323 TKGADRI 329
            K  D  
Sbjct: 393 AKVTDNK 399


>gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
 gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM
           16841]
          Length = 340

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 40/302 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVES 125
             +EY       +L+ NS  ++   F  ++                  +  + I   +  
Sbjct: 15  FFTEYL--PIQRNLSPNSIATYRDTFRLLLLFYDTEKHIKPNLLTLDMLNVQQIEDFMLW 72

Query: 126 RK----HTPSSAIQFLTSMRVLFKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            K       S+  Q L +++  F++         +     L++   K+   G++  T + 
Sbjct: 73  LKKERNCGASTCNQRLGALKSFFRYLQFALPDCALQCQENLAIRPMKQPEPGLKYLTIDG 132

Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232
           ++            G +       +  +G R  +     + H++         T K    
Sbjct: 133 IKLLLEQPDIKTKYGRRDLAILSLMYDTGARVQEIADIKIVHIRFSAPATIRITGKGDKT 192

Query: 233 ITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
             V L      +L       +          F N   Q+++    S      A  A    
Sbjct: 193 RVVPLLSRTEDILKQYIKDFKIDAGGNDAYLFQNRSGQQLSRFGISYILTKYADMARKVH 252

Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                   S H +R   A     A      +    G  +V   E Y +      R  ++ 
Sbjct: 253 PELIPEKLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKREALEK 312

Query: 336 SR 337
           + 
Sbjct: 313 AN 314


>gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 406

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 21/269 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSS 132
            +       A  + + +E     +           D   + I  + I       K   + 
Sbjct: 123 YRELMNKEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQKNC 182

Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A      +L +++ + K A+ ++++  +P   +   K+         + ++++  +   +
Sbjct: 183 AQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINKDFD 241

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---- 241
             +    R  F F  ++GL  +D      +HL          +     T  + D      
Sbjct: 242 IQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPLLDI 301

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
              +L                   +  + + + K  A   G+ K  S H  R   A+++ 
Sbjct: 302 PRLILEKYQSNPICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHTFASLAI 361

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   +    G   +     Y K  +
Sbjct: 362 ANKVSLESIAKMLGHTDIRTTRIYAKIMN 390


>gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 408

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 94/298 (31%), Gaps = 26/298 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 96  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 155

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R++  + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 156 KVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 215

Query: 161 VERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++  +     + +       + Q +         R  F F +Y+GL   D      +H+ 
Sbjct: 216 IKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYTGLAFIDVYNLRPEHVS 275

Query: 219 NNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +             T  + +        ++L                      + + + 
Sbjct: 276 EDSNGNLWIVKPREKTNNICNIPLLSIPKQILEKYKDNPYCMDKGTLLPVPCNQKMNSYL 335

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 336 KEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 393


>gi|261881178|ref|ZP_06007605.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332047|gb|EFA42833.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 389

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 7/258 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           LI   ++      ++  +R   +   D + R         +T+ ++ +  E       S 
Sbjct: 118 LIEYMKEHIEAEDISEGTRKHKQCTLDALKRFGKIQKLTDLTSNNLVAFDEWLHDGTRSD 177

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                +   ++        +  + ++P   V+  + + +   P T+ ++Q+ +    +  
Sbjct: 178 VGIHTYHKHLKKYSHLLYIEGKIEVDPYTQVKFKRGECKEREPLTEAELQKLRKIKLDEK 237

Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               R  F F  Y+GL   D      +         K               F  +L   
Sbjct: 238 LDKVRDLFVFSAYTGLAYCDVQAFDFEK--MTEQQGKLYYIDGSRIKTASKFFTPILGPA 295

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
               + +     K         +     A K     + H  R   AT++         + 
Sbjct: 296 MEVLKKYKFVLPKISNQKANDFLHLIETALKLNKPLTFHVARHSFATLALAHDIPIENVS 355

Query: 309 ATYGWKTVDQAETYTKGA 326
              G K +   + Y K  
Sbjct: 356 RMLGHKNIRTTQIYAKVL 373


>gi|300862223|ref|ZP_07108303.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|300848748|gb|EFK76505.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
          Length = 397

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 111/346 (32%), Gaps = 49/346 (14%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           ++ ++G   YYFR        G++I   R  +  +      Y   L      +    S  
Sbjct: 7   KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSEN 60

Query: 66  KKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   T    I   +        + + +  +      +            I    +++   
Sbjct: 61  KDKMTFNHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQL 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  S   ++ +++ LF  A+ +  V      NP   +   K++   I  WTKE+ +
Sbjct: 120 KLSKKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN---------------- 220
           +  S   +    +      L+    +G+R  ++     + +  +                
Sbjct: 178 KVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQS 237

Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
               ++ +   ++  + L +  +  L+     ++      F ++ +         +   +
Sbjct: 238 DYRFVEPKTKASVRHIVLDECTLNYLSEWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIE 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A  AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 298 RYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6]
 gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6]
          Length = 316

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 77/299 (25%), Gaps = 39/299 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG-----V 123
           T+  +  ++  +     L  ++ + ++S + + I    GD    +I+   ++        
Sbjct: 3   TVNEVAEDWLIAVQ-KVLKHSTYVRYQSIYRRRIQPVIGDCLPTEISQIMVKRCLGLGGN 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              + + S     +  MR +  +A             ++    +        +E  +   
Sbjct: 62  AGPRPSASYVNSTMNIMRQILLYADPTINTENLMHGIIKPKTVQKAIEVFTAEEQRRLLC 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------- 236
               +    +      L +G R  + C      +     +I    T   I          
Sbjct: 122 VLEQQPDTYKTGILICLLTGCRLGEICALKTDDISMENETIHIHSTVQRIQRPAESLSDE 181

Query: 237 ---------------------LPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWF 273
                                        L            ++ N  + M    +   F
Sbjct: 182 DMLGTSKTMLLVTAPKSQKSDRIIPLPDYLYSFLLEHPLYGEYVVNSTKLMEPRTYENKF 241

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                 A +  K+ H +R   AT     G     L    G  +V      Y    + ++
Sbjct: 242 ATYQKMAKIKPKNFHTLRHTFATNCVAGGMDPKVLSELLGHSSVTITLNRYVHPTNEMK 300


>gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713]
          Length = 381

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 123/369 (33%), Gaps = 55/369 (14%)

Query: 12  TKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            K +T+ G I++ ++         G  +       +           +        ++++
Sbjct: 5   RKYKTKKG-ILWRYQILVGTDTVTGKRKYKTKGGFYTKKEAKLAADEIEKKISNPTFLDN 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   +   +  +     +  +S  + E  +  +I+   G+    +ITT   +  
Sbjct: 64  ---ENITFGEVYDRWIVNYKLT-VKESSFYTVELQYKSKILPILGNKKINQITTIECQDL 119

Query: 123 VESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPC------LSVERPKRKTEGIRPWT 175
           +      P  +       +  +FK+A + + V  +P        +  +          +T
Sbjct: 120 INYWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTSSVIIPKASRQFNNLEHSRNYYT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           +++++ F  +  +  + ++   F L  +SG+R S++       +      I   KT    
Sbjct: 180 RDELKTFLEYAEKHEKHKIYVLFRLLAFSGMRKSEALALTWNDIDFEKAQITINKTIILV 239

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------- 267
                       +  TV +    + +L    + ++   +      ++             
Sbjct: 240 SKVKVTTPKTKSSNRTVFIDKKTVSILREWRLSQKKELLQKGFNALSPNQLVFPDKNNHY 299

Query: 268 ----QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
                 S      +  + ++  + HG+R   AT++A  G +  +L A  G   V+   + 
Sbjct: 300 IIPTTISKMMNRVSEGSNLHHITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDV 359

Query: 322 YTKGADRIR 330
           YT   D  R
Sbjct: 360 YTSITDEQR 368


>gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 83/272 (30%), Gaps = 22/272 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKH 128
            L  ++         + N+   +        + + + G      ++T  H+R+ +     
Sbjct: 5   ALYEQFAYHLRIKRRSKNTLNFYDVSRRTLHRFLEQEGITPDTDELTVTHLRAFLVWLGD 64

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P        +++ +F W  R+E +  NP + +E P    E     T E M+     
Sbjct: 65  QGLGPGGIHAQARALKAVFNWGFREELLTRNPAVRLELPSLPKERQPTVTVEVMRSLLKA 124

Query: 186 WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVEL 237
                   +       LL +GLR  +     ++ LQ     I+      ++    +  + 
Sbjct: 125 CKGTERPLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIRVVGKGNKERFVPVGSKA 184

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK---SAHGVR 290
                  L      +     +    +    M  +  SI     A   G+ +   + H  R
Sbjct: 185 MSATSAYLRRERKQRHPGVPHVFLSRSGEVMTRSGISIRLAKLARSTGIEREACAPHAFR 244

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
           +  A      G     L    G  ++D    Y
Sbjct: 245 RGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276


>gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 26/298 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 93  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVRRDY 152

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R++  + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 153 KVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 212

Query: 161 VERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++  +     + +       + Q +         R  F F +Y+GL   D      +H+ 
Sbjct: 213 IKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYTGLAFIDVYNLRPEHIS 272

Query: 219 NNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +             T  L +        ++L                      + + + 
Sbjct: 273 EDSNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKDNPYCMDKGTLLPVPCNQKMNSYL 332

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 333 KEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 390


>gi|168181351|ref|ZP_02616015.1| phage integrase [Clostridium botulinum Bf]
 gi|182675514|gb|EDT87475.1| phage integrase [Clostridium botulinum Bf]
          Length = 390

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 97/383 (25%), Gaps = 64/383 (16%)

Query: 18  HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y          +G+RIR       +   A    L         I+  +     L 
Sbjct: 10  NGKDYYRITYDIGVDSNGKRIR-KQFVGKSKKEAEQKKLDYINKINSGISDTK--TRFLG 66

Query: 73  WLISEYR-KSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHT 129
             +  +  +    G +   S   +E  F   I K         K+    I+    +   +
Sbjct: 67  KTMKIWMFEVVKVGQIKPTSFARYEGIFSNYIEKSPIACISLEKLQPIDIQRYYNTLFKS 126

Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
             S          ++    + V   Y+  NPC   +    K   IR   K      +   
Sbjct: 127 GKSSNIINNLNKLLKQFLNYCVDSGYILKNPCDGKKVIIPKDNKIRRENKILPIFSRDEV 186

Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  E ++ R        +G+R  +        +      I  ++      +   +G
Sbjct: 187 INILRQKEDTKIRYISLISYATGMRKGEILGLKESDIDYTNNEIHIRRAMVTTYIFDENG 246

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-------------------ATQFSIWFK------- 274
                      K      +     +                      F+   K       
Sbjct: 247 KKHKETFLDDTKTYTSERDIPLPKSLIPIINAAISLKKRDILKAGNSFNENNKDLLFLSE 306

Query: 275 --AKATKAGVNKS--------------AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                  + ++KS               H +R   ATI  +       +    G  ++D 
Sbjct: 307 NGEYIEASNIDKSWIYFLKRCRVNHKKFHALRHTYATIQFENEIPLLTISKLLGHASIDI 366

Query: 319 AE-TYTKGADRIR-LGIKNSRRI 339
              TYT    + +   I+    +
Sbjct: 367 TASTYTHVMKKEKEKAIETLSLL 389


>gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1]
 gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1]
 gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 334

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 98/324 (30%), Gaps = 47/324 (14%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
                   E     R++  T+K L   +  S    S+  ++   + +     I  + G+ 
Sbjct: 3   RQTEMQTGEEYGGGRRE-MTVKSLCEIWEASVR-SSVKPSTYACYVTLIEKHIQAELGNM 60

Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              K+T + I   V  ++    +  +    L  ++ + + A ++  +     LS  +P++
Sbjct: 61  SAGKLTNRVILEFVRKKQRQGLSAGTVRLLLFLLKRIVQ-AGKERGIWPAEELSFRQPRQ 119

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            + G      ED  +  S+     +   L     L +G+R  + C      +      ++
Sbjct: 120 LSGGKNIMEWEDFHKILSYLLHSRRSFDLGLLISLSTGIRVGELCGIKWGDIDLKAGILR 179

Query: 226 TQKTGTIITVELPDGFMK-------------------------------------LLAMT 248
            ++T + I     +   K                                          
Sbjct: 180 VRRTVSRIRNVDIEEQQKPFPAKQSRTIIQIGPPKTETSVRDIPLPQFLVERLRERQEER 239

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
               + + +    Q M        FK    K G+   + H +R   A+   + G  +  L
Sbjct: 240 RFSSQAYVLTGRAQFMEPRGVQRRFKNLLKKCGIEPVNIHSLRHSFASKWIENGFDSKAL 299

Query: 308 MATYGWKTVDQAE-TYTKGADRIR 330
               G  +V      Y   + R +
Sbjct: 300 SEILGHSSVKITMDIYVHSSMRQK 323


>gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
 gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098]
          Length = 447

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 116/420 (27%), Gaps = 94/420 (22%)

Query: 15  RTRHGKI-----IYYFRKGHGRRIRLPYPHESTFIPAYMS-------------------- 49
             ++G++        +R G G+RI       S       +                    
Sbjct: 23  TRKNGRVPDRCLSIRYRAGEGKRIHESLGWTSEGWTVAKAVALLRELKENIRTGKRPQSL 82

Query: 50  ------ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QI 102
                 A      + +  +  + +  T + L   Y       + A           +  I
Sbjct: 83  REMRAMAEEQKQREAQLASRAKIEGLTFRELAE-YYGRWCLQNRASG--AQVCQILEMHI 139

Query: 103 IRKSGDFDYRKITTKHI----RSGVESRKHTPS------------SAIQFLTSMRVLFKW 146
           +   GD   + IT + +    R     R  +              + +  L ++R +F +
Sbjct: 140 LPVLGDVPAKDITPQDVAELGRIVSAKRPLSGRNKNTPGACLSAQTVLHILKTVREVFNF 199

Query: 147 AVR---------------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSE 188
           A+                   +      ++  PK  +  +R  +  ++ +   F+    E
Sbjct: 200 ALETPAPGAPGTMLFSGTNPAILSRRNRAIVLPKTDSRRLRVLSDTEITELLAFRGRREE 259

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             +      F L +GLR  +      +    +  +I+              G  ++L   
Sbjct: 260 YGELHDMILFSLDTGLRAGELVNLRCESCDADSGTIRVLVGAKDSLRSTKGGETRILRAG 319

Query: 249 PIGKETFFINNDK---------------QKMNATQFSIWFKAKATKAGVNKS-------- 285
            +  E+  +  ++               ++ +A   +   +    K G N          
Sbjct: 320 RLYPESLNMLRERLGRLKTGFLFPGPDGRERDANGLNRAMRRIMDKLGFNDGVTDPRNRV 379

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVV 343
             H +R   AT   +AG   + L    G  +V   E Y    D   R        ++   
Sbjct: 380 VWHTLRHTFATRMLEAGLDIYALKTLMGHASVTTTEIYLHICDMDKRRAALAKAELARQK 439


>gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 324

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 32/298 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV---ESRK 127
            I ++R+   + ++  ++  +  +     +    D     Y   T   +         R 
Sbjct: 26  YIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEDAKKEPYTLSTHDFVIFFNMLNNRRN 85

Query: 128 HTPSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            T  +  ++   ++V ++           +E +        E+    T     + +   +
Sbjct: 86  CTVRTQNRYFNLLKVFYRLLKYDNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
              S      +  L    L  +G R S+  S R      +   F I+  KT    TV + 
Sbjct: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205

Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA--------G 281
           +  ++++                    +  + +++     +  FK    K         G
Sbjct: 206 EETVEIVRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEG 265

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                H +R   AT   D G     +    G ++++    Y+   +R    + N +++
Sbjct: 266 KRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKDGMLDNIQKL 323


>gi|195977241|ref|YP_002122485.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195973946|gb|ACG61472.1| integrase [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 377

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 105/369 (28%), Gaps = 52/369 (14%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G         F     +RIR+      T   A    L       E          
Sbjct: 4   KKAKNGTWTVDISDGFHPVTKKRIRIIRKGFKTKKEA--LELEQYIRVVELKEKRFDFLV 61

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L     +     +  ++   +  + +   I     + +  K++ +HI    E  K 
Sbjct: 62  TTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINTNLNKLSYEHIFEFREYLKI 121

Query: 129 TP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            P           ++  + +  ++ +F   VR+  +  NP  ++ +       I+ W+ E
Sbjct: 122 KPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENLRKLPISKPTIKFWSVE 181

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------HLQNN 220
           +  +F+   +       L F    ++G+R  +                        +   
Sbjct: 182 EFNEFRKLITSDEISYDLFFTIAFFTGMRLGEILALNWYDINLITNTIHITKTAYFVHGT 241

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQ 268
                T+       + +     ++L      +                I +    +    
Sbjct: 242 NHINSTKTRAGTRHITINHKLARMLGDWKEKQSDLLKEFTTDTESLQVIQSTPLPITKNM 301

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               FK    +         H +R   A++  + G     +    G  ++    +TY+  
Sbjct: 302 IDKKFKQILARNNYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHL 361

Query: 326 --ADRIRLG 332
             + +  L 
Sbjct: 362 YPSKQKTLA 370


>gi|324999072|ref|ZP_08120184.1| phage integrase [Pseudonocardia sp. P1]
          Length = 381

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 105/365 (28%), Gaps = 38/365 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G+    +    GRR   P             A   +   R+    P      L+ 
Sbjct: 16  RKLPSGRYQASYLGPDGRRRAAPDTFARKREAEQWLAAVETELLRDDWTDPALGKIPLRE 75

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
              ++        ++  +R  + S +   +    GD+   +I+T  IRS   +      S
Sbjct: 76  FAEQWIAEHK---ISRRTREEYASVWRLHLASYLGDYPIGQISTDLIRSWRATLLREGRS 132

Query: 133 AIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +R +   AV    +  NPC      + +T      T    Q  K      
Sbjct: 133 EDRTAKAYRLLRAVLNTAVDDGLIKRNPCRIKGAGQHRT--PERPTATVAQVTKLSGLVP 190

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------------ 237
            + R+      ++GLR  +        +  +  ++   +                     
Sbjct: 191 PRFRVLVLAAAFTGLRWGELVALRRCDIDLDGGAVHVYRRLAEHKNGEIEAGPTKSVAGA 250

Query: 238 -------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                         +   +       G       +   +      +  +      AG+  
Sbjct: 251 RTVALPDVLVTELREHIAEYAEDGTEGLVFTGDRDGPLRRGNFHRATAWTRTVVAAGLPS 310

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               H +R     ++A AGA+  ELM   G  ++  A  Y          I  ++R++ +
Sbjct: 311 GFHFHDLRHTGNHLAATAGASTRELMHRMGHGSMRAALIYQHATTERDRAI--AQRLNDL 368

Query: 343 VDSDD 347
           V  D+
Sbjct: 369 VQGDE 373


>gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
 gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM
           17565]
          Length = 385

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 97/344 (28%), Gaps = 43/344 (12%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTT--------------LKWLISEYRK-SAH 83
                     +++  +   +        +  T                  +++Y +    
Sbjct: 40  DTPDAKRLNDASMAKANEIKSKRLLGIDEDETETGGSEPNQLPKRIFADWLNDYIEGIRR 99

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPS------- 131
             S + ++  ++ S  + I               KI  K I   ++  ++T         
Sbjct: 100 SPSYSQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAGLLDFMQNTYRNTKSPDN 159

Query: 132 -------SAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQ 181
                  +       +  +   AV +  +  NP       ER  ++       TK+++  
Sbjct: 160 PKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPFYALGKHERIAKQQAERDYLTKDELLA 219

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPD 239
                +     R AF F  ++GLR SD C    + ++     +    +            
Sbjct: 220 LAEAPTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVDSGLVVSIRAMRKTGKQVTIP 279

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                L   P               + +      K  A  AG+ K  S H  R   AT+S
Sbjct: 280 LNQSALKWLPDRNGCKPGQRVFDMTSLSACDRCLKKSAVAAGIEKNVSYHTSRHTFATLS 339

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
             AG   + +    G   +   + Y       +  I+   RIS 
Sbjct: 340 LAAGGDLYTVGKLLGHTNILSTQVYADVVMETK--IEAVNRISE 381


>gi|329313503|gb|AEB87916.1| Integrase [Staphylococcus aureus subsp. aureus T0131]
          Length = 368

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 93/357 (26%), Gaps = 38/357 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-RE 59
           MT +L L   + K+  R     YYFR  +  +                 A+        E
Sbjct: 1   MTHNLNLSHNIYKDTKRG---TYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                         L+ EY           + +       + ++      D  K+TT+ +
Sbjct: 58  LEGVGHLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117

Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 +    H+     +    +  L   A++   +  N    V   + +++    +  
Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWT 177

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            +            Q +L F+ L YSG R  +      + +  +   I   KT       
Sbjct: 178 LEQFNQFYGALVTQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVT 237

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAK 276
                       +   + D     L                    +  + +    WF   
Sbjct: 238 APKTKSAIRDIYLPTHMMDDIKGYLNWYKENNIFKDDYVLFGTFYKAYSESTIDRWFTNA 297

Query: 277 ATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                              H +R   A++  + GA+   +    G       E Y +
Sbjct: 298 LKVLDEQLPNGQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSD--TTEVYNR 352


>gi|210632076|ref|ZP_03297198.1| hypothetical protein COLSTE_01092 [Collinsella stercoris DSM 13279]
 gi|210159733|gb|EEA90704.1| hypothetical protein COLSTE_01092 [Collinsella stercoris DSM 13279]
          Length = 302

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 85/289 (29%), Gaps = 23/289 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L    S Y + A    L   +   + S     ++   G  +   I  + ++  V+S   T
Sbjct: 3   LSDACSAYME-AKSKKLRRTTLEGYASGLRCHVLPAWGGRELESIRRREVQEWVDSIP-T 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P +A + L  +R + +WA+R   + I           K    R       +      + G
Sbjct: 61  PGAAEKALKCLRQVMRWAIRSLDLEIFDPTQGVELPPKPVYRRESMDAREEACVLRAAVG 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------IKTQKTGTIITVE 236
                        GLR S++       +                          T ++  
Sbjct: 121 QPWEAVVLCAAALGLRPSEAAGLDWGDVDWRSGWVHVQRGAHSTQGGTVEYGCKTRLSDR 180

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                   L      +        + +++  Q    FK    + G+   S   +R   AT
Sbjct: 181 HLKLPRFALERLRQLRGQRRKGRMRGELSPRQIYSRFKRFLRRMGLGRCSMECLRHTWAT 240

Query: 296 ISADAGATAHELMATYGWKTVDQ-AETY---TKGADRIRLG--IKNSRR 338
           ++ + GA   ++    G  +V    + Y   TK   +          R+
Sbjct: 241 LTIEGGAALADVSVALGHTSVSTCLQHYLMSTKAVVQRAQDCFADAMRK 289


>gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 317

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 15/289 (5%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFD 110
            +    E +   + +  T   L   Y K     +L+  +   +E   +   +        
Sbjct: 2   QTKKGLEKMIMSKGEDITFTELQKRYLKKCLVNNLSEYTLRFYEVSCNTFNKFIDLSQLM 61

Query: 111 YRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             ++    I + +   ++T     +   ++  +  + K+ +    +       ++  +  
Sbjct: 62  ASEVNRDLIDNYILYLRNTGVKAVTINTYIHGISPIIKYGMSLGLIEKFGFNEIKTTEEI 121

Query: 168 TEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224
            +       +  +++         +  +   FLL +G+R  +     ++ +    ++  +
Sbjct: 122 KQIYTPHELQILLKKPNMKSFAEYRNWVIINFLLGTGVRALELRSIRIKDIDLKMSMLIV 181

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKAT 278
              K G    + +     K+L      +      +  F N   Q +  T   I       
Sbjct: 182 PRTKNGKQRYIPISKSLNKILTDYLDYRKAESEEDFLFCNEFGQYLPRTTLQIGITKYCK 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           K GVNK S H  R   A +      +   L    G  ++ Q   Y   A
Sbjct: 242 KRGVNKYSLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANLA 290


>gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 396

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 115/385 (29%), Gaps = 61/385 (15%)

Query: 1   MTPSLRLPPFVTKER----TRHGKIIYYFRKGHGR------RIRLPYPHESTFIPAYMSA 50
           M+   R              + G+  Y +    G+         +P           +S 
Sbjct: 1   MSEKRRDSKNRILRTGESQRKDGRYAYKYIDAFGKPQFVYAWKLVPTDRTPAGKREDISL 60

Query: 51  LTGSTPKREYINSPRK---KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KS 106
                  R+ +N       K  T+  L  +Y K     +   +++ ++    + + + K 
Sbjct: 61  REKEQEIRQDLNDGINTAGKKMTVYELFQKYLK--QQRNTRASTQNTYHYLLEFLKKDKF 118

Query: 107 GDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-- 161
           G      I    +++ +   +       + + +  +++  FK A+  + +  NP      
Sbjct: 119 GARSIDGIKISDVKAWLLELRDNGLAYGTVLFYKRALKPAFKMALHDDCIIKNPFDFSLS 178

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQ 218
              K  T+  +  TKE  ++  SF       R  ++ +   L +GLR S+ C   V+ L 
Sbjct: 179 SVMKNDTQARQALTKEQEEKLLSFMRSDVCYRKYYDEVIILLRTGLRISEFCGLTVKDLD 238

Query: 219 NNIFSIKTQKT---------------------GTIITVELPDGFMKLLAMTPI------- 250
                I                             ++ E+   F  +L            
Sbjct: 239 FTNRVINIDHQLIKLSKTGYVVQPPKSENGIRQIPMSDEVYQAFQNILKHRRKPKNLVID 298

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGA 302
              +  FIN +     A  +   F+    K            + H +R    T  A+AG 
Sbjct: 299 GYSDFLFINRNGNPQVAVNYETVFRKLVDKYNSKYEEPLPKITPHVMRHTFCTRLANAGM 358

Query: 303 TAHELMATYGWKTVD-QAETYTKGA 326
               L    G   +      YT  +
Sbjct: 359 NPKALQYVMGHSNITITLNLYTHAS 383


>gi|301022623|ref|ZP_07186494.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299881195|gb|EFI89406.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 327

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 103/320 (32%), Gaps = 20/320 (6%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK---PTTLKWLISEYRKSAHWG 85
            G+   L          A  + +   +         R K     TL   +  Y       
Sbjct: 1   TGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRIKGGDAITLHVWLDRYETILSER 60

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
            +   + + + S    I RK  D     I+TK + + + +   +   +SA    +++  +
Sbjct: 61  GIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDV 120

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F+ A+ + +VA NP  +    K +    R    E ++ + +        RLA +  + +G
Sbjct: 121 FREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTG 180

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------LAMTPIGKET 254
            R  D CR     + +N   I+  KTG  + + L      L                 ET
Sbjct: 181 QRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLMLTIDALNISLADTLQKCREASSSET 240

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMA 309
              +     ++    S +F      +G+       + H +R  SA               
Sbjct: 241 IIASKHHDPLSPKTVSKYFTKARNASGLSFDGTPPTFHELRSLSA-RLYRNQIGDKFAQR 299

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K+   A  Y     R 
Sbjct: 300 LLGHKSDSMAARYRDSRGRE 319


>gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
 gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC
           43183]
          Length = 412

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 93/318 (29%), Gaps = 22/318 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R  + R   + +        +Y++A       +               L+ E R+S    
Sbjct: 71  RIENYRTELIRHYKTLLENKSYITAEILKNAIKRIGIRQNSLIQEFAALLEEKRQSVGIL 130

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRK----HTPSSAIQ 135
            +   +       +  +           D  + ++    I S V   K     + S+   
Sbjct: 131 IV-ETTYAHLNRAYHHLKEFLQYKYGVTDIPFTQVDFDFIESYVYYLKINLQFSASTTNN 189

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +  +R +   A+ +  +  +P      P+R T   +  + +++++      +       
Sbjct: 190 TIKPLRRIVMRALNKGLMYQDPFFGYR-PQRITITRKWLSMDEIERLMQVEMKRESANFI 248

Query: 196 FEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMKLLAM 247
            +  L+   +GL   D       ++       +        T         D  ++L+  
Sbjct: 249 RDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTGTTSKIPLLDIPLQLIEK 308

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAH 305
                   F     +        I  K  A  A ++K    H  R   AT+    G    
Sbjct: 309 YWDTAFAGFGGRVFRLCTIENTDIQLKKIAKAAKIDKRLTYHMARHSYATLCLSMGVPIE 368

Query: 306 ELMATYGWKTVDQAETYT 323
            +  T G +++   + Y 
Sbjct: 369 TISQTLGHRSITTTQIYA 386


>gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 330

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 89/318 (27%), Gaps = 36/318 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSG--------DFDYRKITT 116
           K T    LI  +        +  + ++   +   F  +IR +G              +  
Sbjct: 2   KATNFPALIQRFFTDRLCTQMEASQHTIAGYRDTFRLLIRYAGSRCGKPPTKLTIEDLDA 61

Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             +   +      R +T  +    L ++R  F++    +   +  C  +     K    R
Sbjct: 62  DLVADFLSHVETTRGNTARTRNARLAAIRSFFRYVAMTDPTWLLHCQRILSMPSKRYVKR 121

Query: 173 PWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             T  D Q+              G +        L +GLR S+      + +     +  
Sbjct: 122 SVTFLDAQEIAALLVAPDRTTWVGRRDHALLLLALQTGLRASELISLRCKDVVLGAGAHI 181

Query: 226 TQ--KTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKAT- 278
               K     +  L     KL+      +       F +   ++++        +     
Sbjct: 182 RCVGKGRKERSTPLRRDTAKLIQGWIGERRDSDSPLFPSIRGERLSRDALEHLVRKHCLT 241

Query: 279 -------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                   A    + H +R  +A      G     +    G ++V+  + Y     R++ 
Sbjct: 242 ASRTCPSLASKRVTPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHADMRLKE 301

Query: 332 -GIKNSRRISSVVDSDDP 348
             +    R  +      P
Sbjct: 302 KALSQVARPEAHPGRYRP 319


>gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028]
 gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028]
          Length = 404

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 110/402 (27%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNKSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           + +     + S       +  +R +FK+A +   +     L      +K +       + 
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 178 --------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                                     ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             NDK               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNDKFTDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D+  +      ++ ++
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLENI 402


>gi|283783412|ref|YP_003374166.1| site-specific recombinase, phage integrase family [Gardnerella
           vaginalis 409-05]
 gi|283442114|gb|ADB14580.1| site-specific recombinase, phage integrase family [Gardnerella
           vaginalis 409-05]
          Length = 323

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 85/314 (27%), Gaps = 39/314 (12%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGS--LAVNSR----ISFESYFDQIIRKSGD 108
            P +E       + TTL     E+ +        L  +++     ++E   + I    G 
Sbjct: 1   MPPQEVKRREIAEHTTLDAYFPEWLEKRRVRGKPLKDSTKYATTKTYE---NHIKPVLGS 57

Query: 109 FDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
                ++T+ +    +      P      +  +R +   A+R +     P L        
Sbjct: 58  VALADLSTQMVNDFRDGLDAAQPDMVRNTMKVLRAIVNSALRPDINGNPPILKNNPFTVS 117

Query: 168 T---EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL-RCSDSCRAGVQHLQNNIFS 223
               E     T    ++ K+ +S           L   G  R  + C   V  +     +
Sbjct: 118 EAKVERRHEITIATPEEVKTIYSMMPDSYAPTVLLASLGAFRIGEICALKVSDIDFKHNT 177

Query: 224 IK-----------------TQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINN 259
           +                   +   +  +  +P   +  L                    +
Sbjct: 178 VTISRTRATTPNSTVLTTAPKTEHSNRSEVIPVSLVDGLKEFVKKQELSKDDWLFPMRTD 237

Query: 260 DKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +       ++      A   +   H +R    T  A +GAT  ELM   G      
Sbjct: 238 RTTPIRTNTLRDYYDKARLAANRPDLHFHDLRHTCLTWLAQSGATVKELMDMAGHADPKI 297

Query: 319 AETYTKGADRIRLG 332
           A  Y   AD  R  
Sbjct: 298 AMIYQHAADERRRS 311


>gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 409

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 84/282 (29%), Gaps = 25/282 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGV----ESRKH 128
            K+      A  +   +      I           D  + ++T + I        E + +
Sbjct: 121 LKARIGIDRAKGTYPGYHYMRLTIGEFIENKYKVKDLAFGQLTEQFIHDYQSFATEEKGY 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    L  ++ + + A +  Y           PK+     R  ++E  ++ +     
Sbjct: 181 AIDTVRHHLAILKKICRLAYKDGYADRIHFQHFTLPKKTETTPRALSRESFEKIRDVEIP 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +      R  F F  Y+G+  +D      ++L  +       K             +K
Sbjct: 241 AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKY--RRKKNELRACVK 298

Query: 244 LLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS- 297
           LL       E +   +        + +      KA A  AG+      H  R   A++  
Sbjct: 299 LLPEAIALIEKYHSEDRDTLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLIT 358

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +AG     +    G   +   + Y + + +     ++  + 
Sbjct: 359 LEAGVPIETISRMLGHSDISTTQVYARVSPKK--LFEDMDKF 398


>gi|254501567|ref|ZP_05113718.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222437638|gb|EEE44317.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 397

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 118/373 (31%), Gaps = 38/373 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSAL------TGST 55
           L  F  K   +  K+     +  G     ++  +    + T   A  +AL          
Sbjct: 29  LKGFGVKVTPKGRKVFIVQHRPKGHKGAAKKYTIGKYGDFTVQQARDAALDVIHNSAQGI 88

Query: 56  PKREYINSPRKK---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
                  + R K     T K L+S++ +     + +           D  +I   G+   
Sbjct: 89  DLGAQQKAERAKQLNDLT-KDLVSQFIEKHVSQNRSA---RETTRLLDHDVIPVIGNKSI 144

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +T   I S V+      +  +A + L ++R    W V +  +  +P  +V  PK++  
Sbjct: 145 HDVTKHDIISIVDRVSGRGAHTTANRTLAAVRKFLNWCVGRGVIETSPAANVAAPKKEVS 204

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
             R     ++    +   +   P   +  LL+ +  R  +        +  +  +     
Sbjct: 205 RDRALDTAELAAILNATDKMGFPFGYYVKLLFLTAQRRGEVSGMRWSEINLDSATWTIPA 264

Query: 228 ---KTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATK 279
              K G    V L    + +L   P                  K + + FS   K     
Sbjct: 265 ERAKNGKAHVVHLSQASLDVLQSIPKFANANGTESDLVFTTNGKTSISGFSKAKKQLDEL 324

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKGA---DRIRLG 332
           +GV +   H +R+   T  A  G   H   A    KT      A  Y +     DR R  
Sbjct: 325 SGVTDWRIHDIRRTVVTQMAAMGVWHHVADAILNHKTGAISGVAAVYQRHEFLDDRKRAL 384

Query: 333 IKNSRRISSVVDS 345
              ++R+  + D 
Sbjct: 385 DDWAKRLREISDE 397


>gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
 gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC
           9343]
          Length = 305

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 37/302 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            + +I  +R+      +  ++  ++     + I+   G  D  +I    ++  V  + ++
Sbjct: 4   FQEIIRLWREDKK-QYVKTSTISAYTLLIENHILPAFGKAD--RINEADVQEFVFEKLNS 60

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                S    L  ++++ K+ V+  Y            +R+ + I   ++ + ++  S  
Sbjct: 61  GLSQKSIKDILIVLKMILKFGVKNGYFEYTQIDIKFPTQRERQEIEVLSRSNHRKVISHI 120

Query: 187 SEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            E    R    ++    G+R  + C    + +      I  +KT   + +   +     L
Sbjct: 121 QENFTFRNLGIYICLCAGMRIGEICALKWEDIDTENGIISVKKTIQRVYMIEGEERYTEL 180

Query: 246 --------------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                                         +    F + N+ +      +  ++K    +
Sbjct: 181 ILDSPKTKNSIRDIPMTRDLLKLLKPLKRIVNNNYFVLTNEAKPTEPRTYRNYYKQFMQE 240

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336
            GV     HG+R   AT   ++      +    G   +      Y     ++ +  I   
Sbjct: 241 IGVPILKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKKRCIDQM 300

Query: 337 RR 338
            +
Sbjct: 301 VK 302


>gi|323937185|gb|EGB33465.1| phage integrase [Escherichia coli E1520]
          Length = 399

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 108/340 (31%), Gaps = 30/340 (8%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYP------HESTFIPAYMSALTGSTPKREYINSPRKK 67
           R G   +  R    G  + I +                 +  A+      +   ++ R  
Sbjct: 42  RTGNKRFLLRYTFHGTKKSISIGRFPEIDVGTARQIARRHKEAIALGNDPKAERDNYRAM 101

Query: 68  PTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P TL     + Y           +     + +   I    G   Y  +  + I+  +   
Sbjct: 102 P-TLSEFFHQTYV--PFIKRHKKSWDKDVQRFTQYIEPCLGKIRYCDLRAREIQQVLFDM 158

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                   ++ PS+  + L  ++ + ++A+RQ+ +  N    +   K   +  R +  ++
Sbjct: 159 LEGRIHGQQYAPSTCNRALAILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADE 218

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++     +             LL +G R S+      +H+  +  S+    T    +  
Sbjct: 219 IRRILDAAARYPNKAAGGLIAMLLLTGTRKSEMLNVMHKHIDRDNRSLFIPYTKNGRSRT 278

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKS---AHGVR 290
           +      L  +  I +          K N          ++    + G++KS    H  R
Sbjct: 279 VYLSEAALSIIDSIPRVGSNPYLFAIKDNGKPISEPRWAYEKILAECGIDKSEVCFHTTR 338

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
              A++   +G  + +++ A     ++   E Y K     
Sbjct: 339 HSVASLLVSSGQYSLYDVKAQLAHASIQSTERYAKLTPER 378


>gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S]
 gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S]
          Length = 313

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 94/303 (31%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +Y +        + ++  ++ +        + R   D     +  + +R+ + ++   
Sbjct: 18  LDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAA 77

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  +S +    WA R   + ++P + +  PK          +E   +     
Sbjct: 78  GTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAA 137

Query: 187 SEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G+        + RL  E L  +G+R  + C   +  + ++   ++   K      V  
Sbjct: 138 ESGAAQEDPVAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPF 197

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                  +                     +     +++  Q                + +
Sbjct: 198 GRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLA 257

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            HG+R  +AT   + GA    +    G  ++   + YT  +           R+ +V D 
Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVS---------VARLRAVHDQ 308

Query: 346 DDP 348
             P
Sbjct: 309 AHP 311


>gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4]
 gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4]
          Length = 452

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/301 (8%), Positives = 82/301 (27%), Gaps = 47/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              ++ +  +       +  +  ++  +  Q  R   +   ++++T  ++  +       
Sbjct: 136 WDAVLEKLAEEIKVRHYSRKTLKTYALWSRQFQRFLKNKPPQELSTADVKEYLTYLAVKC 195

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQ------------------------------------ 150
               S+  Q   S+  LF+ A+++                                    
Sbjct: 196 HVAASTQNQAFNSLLFLFRHALQRDFGELRDVPRAKKSLYIPAVLSRLEIDAILEQLSHP 255

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             + +           +   +R           +   +G + R             +   
Sbjct: 256 YNLVVKMLFGCGLRLFEGLQLRVRDFNFDVNILTVHGKGKKDRTVPLPESILTELKAQIK 315

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMN 265
           R GV H ++ +           +  + P+   + +      +++  +        +  ++
Sbjct: 316 RVGVLHDRDLVAGYDGVFLDDAVERKYPNAAKEFIHQWFFPQQSLTMVEETGERRRWHLH 375

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++          +A + K  ++H  R   AT    A      +    G  ++     YT
Sbjct: 376 ESELQEALYHAVRRAKIPKRVTSHIFRHSFATHLLQANYDIRVIQKLLGHASLKTTMIYT 435

Query: 324 K 324
            
Sbjct: 436 H 436


>gi|253563308|ref|ZP_04840765.1| predicted protein [Bacteroides sp. 3_2_5]
 gi|251947084|gb|EES87366.1| predicted protein [Bacteroides sp. 3_2_5]
          Length = 434

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 25/301 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSG 107
             L       +     + +  +  +   EY  K    G +  ++  ++++    +     
Sbjct: 100 KELLKEIVSGKQKKYNQSENQSFYYYFEEYISKKREIGKIQESTWNTYQTTLRSLKEFRQ 159

Query: 108 DFDYRKITTKHIRSGVESRKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPC 158
           +     I+ K +    +      +         S    +  +R + ++         NP 
Sbjct: 160 EIRIIDISKKLLDDFDKYLIKRGTENHKGTVEGSRRNRIKHIRAVIRYIEDLRIPIKNPY 219

Query: 159 L-------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                   + +      E         +       S   +  L + F   +G+R  D+  
Sbjct: 220 KTLDLAIPNDKENNIFLEIDELRRMFCLINKVKEKSIEYRVLLMYLFSCVTGIRIGDALA 279

Query: 212 AGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                L              KT   ++V +     ++L   P G       N K      
Sbjct: 280 VKWGDLDVERSPIILSFVAIKTKKCVSVPIFPLAEEVLMYAPEGNIDNVERNKKIFHTYP 339

Query: 268 Q--FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           Q   +   +  A KA ++K  + H  R+  AT++   G   ++L    G  +    E YT
Sbjct: 340 QELINKTLRELAKKANIDKHITFHSSRRTFATLAIIQGIPLNDLKNYMGHSSTKTTERYT 399

Query: 324 K 324
           K
Sbjct: 400 K 400


>gi|222147551|ref|YP_002548508.1| Integrase protein [Agrobacterium vitis S4]
 gi|221734539|gb|ACM35502.1| Integrase protein [Agrobacterium vitis S4]
          Length = 343

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 90/318 (28%), Gaps = 23/318 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            RHG   +Y R                   A    +   T   +      +K  T     
Sbjct: 7   KRHGGKNWYIRGTIRGVSVDETTGTDDKKRAEEIRIRRETEILDRRIHGIRKTATFLEAS 66

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133
             Y +                 + D + R  G     +I    I             S+ 
Sbjct: 67  VMYLEEGGAS-----------RFVDVVARYFGTTPLSEIDQPAIDRAARVLYPDAKASTR 115

Query: 134 IQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            +   T +  +  +A +++            P +    IR  T E+ Q      +   +P
Sbjct: 116 NRQVFTPVSAVLNFAAKKKMCDKPIIER---PAQPKGRIRWITIEEAQSLIDACAPHLKP 172

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            + F F   + L  +         L  +  +    KTG    V L  G + +LA  P  +
Sbjct: 173 LVTFLFYTGARLSEALYLDWRDVDLSRSHVAFLDTKTGDDRGVPLHSGVVAMLANLPHRE 232

Query: 253 ETFFINNDKQKMNAT-----QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
              F  +D +          Q    FK    +AG+ +   H  R   AT    A      
Sbjct: 233 GAVFRRHDGKPYEVKEDGGGQIKTGFKGACRRAGISDFHPHDCRHTWATWHYAANRDLIT 292

Query: 307 LMATYGWKTVDQAETYTK 324
           LM   GWK+      Y  
Sbjct: 293 LMRLGGWKSERMVLRYAH 310


>gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 408

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 26/298 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVNSRISFESYFDQIIR------ 104
            R  +N  + K  T K L + +++             A  +   +++    ++       
Sbjct: 96  ARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRRYDNCLKYLMELVKRDY 155

Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           K  D   R++  + +R         +    ++ I+++   + +   A+  E++  NP   
Sbjct: 156 KVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIANEWLTKNPFAG 215

Query: 161 VERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           ++  +     + +       + Q +         R  F F +Y+GL   D      +H+ 
Sbjct: 216 IKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYTGLAFIDVYNLRPEHIS 275

Query: 219 NNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +             T  L +        ++L                      + + + 
Sbjct: 276 EDSNGNLWIVKPREKTNNLCNIPLLSISKQILEKYKDNPYCMDKGTLLPVPCNQKMNSYL 335

Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K  A   G+ K  + H  R   A+ I+     +   +    G  +    + Y K  D+
Sbjct: 336 KEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKVLDQ 393


>gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 333

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 51/309 (16%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP 130
           L+ EY    H    L+ ++  ++      +   + +      K++  H+R          
Sbjct: 11  LMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDSVELLKVSNGHVRRWAGRLHSKG 70

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPC------------LSVERPKRKTEGIRPWT 175
               S  + L++ R  + W   ++                     V+ PKR     +  +
Sbjct: 71  KSSRSIARALSAWRGWYDWLTEKDARRDARAGKVTNNLIANPVDDVKAPKRLKSLPKALS 130

Query: 176 KED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            E           +  +    E  +     + L  SGLR S+     V   ++       
Sbjct: 131 VEQALALVNQAVKEAEEKKDLESIRDAAIIDLLYSSGLRLSELLGIDVMQSKDRQHESAG 190

Query: 227 QKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMN 265
                              +V +    MK LA+    ++    + +           +++
Sbjct: 191 WLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAVWRELRDAGSYSEESIALFLSATGKRLS 250

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +  A +AG+      H +R   A+    +      +    G  ++   + YT
Sbjct: 251 PRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYT 310

Query: 324 KGADRIRLG 332
              D   L 
Sbjct: 311 -SLDFQHLA 318


>gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
 gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707]
          Length = 313

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 94/303 (31%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           + +Y +        + ++  ++ +        + R   D     +  + +R+ + ++   
Sbjct: 18  LDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAA 77

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++     +  +S +    WA R   + ++P + +  PK          +E   +     
Sbjct: 78  GTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAA 137

Query: 187 SEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
             G+        + RL  E L  +G+R  + C   +  + ++   ++   K      V  
Sbjct: 138 ESGAAQEDPVAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPF 197

Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285
                  +                     +     +++  Q                + +
Sbjct: 198 GRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLA 257

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            HG+R  +AT   + GA    +    G  ++   + YT  +           R+ +V D 
Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVS---------VARLRAVHDQ 308

Query: 346 DDP 348
             P
Sbjct: 309 AHP 311


>gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 398

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 101/367 (27%), Gaps = 61/367 (16%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F   +G R    +             L  +  +  +         T+    +
Sbjct: 18  KDGLYFARFYAKNGARQNGYFKTLPEAKK----WLADAKYEDTHNLIVTAPDMTVDKWFN 73

Query: 77  EYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
            +  +     LA N+  ++   Y   I    G      +   H ++ +   +  +  S+ 
Sbjct: 74  YWIDNI-ICDLAPNTIRNYRERYEKNIQPLIGTMCIADVKPMHCKAVLNRMETEYAGSTI 132

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            Q   SM  +FK AV  + +A +P   V    P R  + I+  T E+ ++F     E S 
Sbjct: 133 RQTYISMGTMFKSAVMNDIIAKHPMNGVRYTKPVRAVDDIKYLTVEEQEKFLEAA-ERSH 191

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---------- 241
               +  LL +GLR ++        +     ++   K+                      
Sbjct: 192 NYRQYALLLETGLRTAELIGLTWDAIDWKKRTLTVNKSLEYRHSRRYWRAGPPKTKKSYR 251

Query: 242 --------MKLLAMTP------------------------------IGKETFFINNDKQK 263
                     +L                                  +    F      + 
Sbjct: 252 TIPLTERAYTILKSCYDEKDTRKESEMLSQILEYTDSRTGEKKCLVMRDLVFINWRTGEP 311

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
              + +         +AG+ +   H +R   AT + + G     L    G  ++      
Sbjct: 312 AKNSSYDTHLYKLCDEAGIKRFCMHALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDR 371

Query: 322 YTKGADR 328
           Y    D 
Sbjct: 372 YVHVTDE 378


>gi|111221204|ref|YP_711998.1| integrase [Frankia alni ACN14a]
 gi|111148736|emb|CAJ60412.1| Integrase [Frankia alni ACN14a]
          Length = 405

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 116/369 (31%), Gaps = 50/369 (13%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--- 69
           +ER  H ++++    G G           T    Y + +  +  +R        +P    
Sbjct: 5   QERANHVRVMWR-EGGRGSTPEYEKFASRTEAEVYKTLVEAAGNRRPTPVVEDGRPPRPI 63

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
                T++   + +   +    +   +   +E      ++   G  +   +++  +   V
Sbjct: 64  AGLPCTVETWATYWL--SGLSGVRGRTAKDYERDLRNHVLPLLGGLELTAVSSTDVGQWV 121

Query: 124 ESRKHT---PSSAIQFLTSMRVLFK---WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  +     P +       + VLF+       Q     NPC     P+   E +   T  
Sbjct: 122 KGLQERGLAPKTIRNQHGLLSVLFQAAVDHEPQAMRPGNPCARTRLPEASGEEMHFLTPA 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------- 224
           ++++  +        R     L  +GLR  ++     +++                    
Sbjct: 182 ELERLLAA--LPPHYRPLVTTLALTGLRWGEATGLTARNVDLLGTPGTTAVRQSLQRQAD 239

Query: 225 ------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN----ATQFSIWFK 274
                   +   +  TV LP   + +L     GKE   +    Q+ +    +  ++  ++
Sbjct: 240 GSLQLGPPKTRTSRRTVTLPAKLVDVLIPVWSGKEGDEMVFTTQRGSLVRHSHFYNRVWR 299

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK---GADR 328
               +AG+      H +R   A     AG     +    G +++    + Y       DR
Sbjct: 300 PAVLRAGLVPGLRIHDLRHTHAAWLISAGRPLPSIQRRLGHRSITTTIDRYGHLLPEVDR 359

Query: 329 IRL-GIKNS 336
             L  ++ +
Sbjct: 360 GDLDALQAA 368


>gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 368

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 89/339 (26%), Gaps = 47/339 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     G+R+R           A+ +        + ++   +     L
Sbjct: 4   RKQSSGKWLCECYPNGRDGKRVR-KQFATKGEAVAFENFTMDEASNKPWMG-EKADRRKL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             +I  +       SL   +    +        I    GD    + +        E R  
Sbjct: 62  SEIIKLW------DSLYGQTLADPKRMNAKLKIICDGVGDPLAIEFSAADFSVYREKRLK 115

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                       K  P +      ++  +F    +   + A NP       K     +  
Sbjct: 116 GEIITPEGVLLAKVKPRTVNLEQLNLSAVFSTLKKLGHWPAPNPLTGFPMFKLHESELAF 175

Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               ++++     SE + P L    +  L +G R S++       +     S    K   
Sbjct: 176 LDNLEIKRLLDSCSESTNPHLLTIAKICLSTGARWSEAETLEGHQVSKYRISFIKTKGKK 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAH 287
             TV +     + L        T                  F+    +AG+        H
Sbjct: 236 NRTVPITQELYEELPKNRGRLFTPC-------------RKAFERAVKRAGITLPDGQCTH 282

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   A+     G     L    G   +     Y   A
Sbjct: 283 VLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAHFA 321


>gi|254477346|ref|ZP_05090732.1| chorismate mutase family protein [Ruegeria sp. R11]
 gi|214031589|gb|EEB72424.1| chorismate mutase family protein [Ruegeria sp. R11]
          Length = 353

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 29/322 (9%)

Query: 27  KGHGRRIRL-PYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLISEY-RKSAH 83
           K +G+R R      + +   A++               + +++  TL   I  Y  +S  
Sbjct: 23  KRNGKRFRDNRTFEKRSAAEAWIKKREKEVKAFEGDFLTLKQRNKTLADAIDRYVLESQR 82

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
                  ++        +            I +  I S  +       P++   +L+ + 
Sbjct: 83  EIG---RTKAQVLRTIKEY--DIASLKCADIVSPDIVSFAQELAIGKEPATVSNYLSHLS 137

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRK-----------TEGIRPWTKEDMQQFKSFWSEGS 190
            +F  A     V ++     +                 +      + D        +  S
Sbjct: 138 SIFAIAKPAWGVPLDGQAMKDAMVVCSRLGLSGKSRKRDRRPSLAELDALLDHFQVATAS 197

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPDGFMK 243
            PR      +      S    + +  +       +     I+  K             + 
Sbjct: 198 NPRALPMHKIVLFALFSTRRESEITRILRSDLDPEYGRVFIRDMKHPGAKLGNDVWCDLP 257

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
             AM          +      N    S  F        + +   H +R   A+   + G 
Sbjct: 258 QRAMDVALSMPLSPDGRVFPFNPDTISSRFTRACKVLEIKDLRFHDLRHEGASHLFELGY 317

Query: 303 TAHELMATYGWKTVDQAETYTK 324
           +  +  A  G ++    + YT 
Sbjct: 318 SIPQAAAVTGHRSWSSLQRYTH 339


>gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens]
          Length = 320

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 55/302 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQF 136
           ++       +  +  S+  +  + I         K++ +H+   +         A   Q 
Sbjct: 10  KEHMLMRHYSNKTIESYLFWIKRYIVFHQFAHPSKLSEEHVVQFLSHIAVKDKVAVKTQA 69

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L    + F +    +          +    +       T++++++F        + +L  
Sbjct: 70  LALCSIAFLYRDFFQTPLSLEMRFQKSLTERK-LPVVLTRDEIRRFIQH--IDPKYKLQT 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKET 254
             L  SGLR  +  R  +Q +  +  +I+  +       TV L       L        +
Sbjct: 127 LLLYGSGLRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKELHSSLKAQVDLARS 186

Query: 255 FFINNDKQK----------------------------------------------MNATQ 268
           ++  +                                                  +N + 
Sbjct: 187 YYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPEMGELRRHHINESA 246

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A  AG+ K  + H +R   AT   ++GA    +    G   V   + YT   
Sbjct: 247 LQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVI 306

Query: 327 DR 328
           +R
Sbjct: 307 ER 308


>gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 406

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 95/293 (32%), Gaps = 28/293 (9%)

Query: 64  PRKKPTTLKWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKSG------DFDY 111
            +++ TT K LI  +++             A  +   +E+                D + 
Sbjct: 101 KKEEVTTCKMLIPIFKEHNRQVAALIGTEYAQGTADRYETSLKHTQAFLKWKYKVDDINI 160

Query: 112 RKITTKHIRSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             I  + I S     +     A      ++ + + +    +   ++  +P +  + PK K
Sbjct: 161 EGIDHEFIMSYDFYLRSERKCANNSTVKYMKNFKKIILMCIDNGWLDKDPFIKYK-PKVK 219

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                  TKE+++   +     S+    +  F F  Y+GL   D  +     +   I   
Sbjct: 220 VVAREYLTKEELETMATKSYSSSRIEQVKDIFIFCCYTGLAYIDVKQLKRSEIIKGIDGQ 279

Query: 225 KTQKTGTIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           +   T    T       +     +++       E   ++     ++  + + + K  A  
Sbjct: 280 QWIFTTRQKTNTASRIPLLTQASEIIQKYKHHPECADMDKVLPVLSNQKMNSYLKEIADI 339

Query: 280 AGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            G+NK  + H  R   AT      G +   +    G K +   + Y K  D  
Sbjct: 340 CGINKELTFHIARHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKILDSK 392


>gi|311071149|ref|YP_003976072.1| putative phage integrase [Bacillus atrophaeus 1942]
 gi|310871666|gb|ADP35141.1| putative phage integrase [Bacillus atrophaeus 1942]
          Length = 368

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/372 (11%), Positives = 105/372 (28%), Gaps = 49/372 (13%)

Query: 14  ERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +T+ G+             G  +R  +    +      Y +     +           K
Sbjct: 4   RKTKDGRYRIDVSLGFDPVTGKRKRKTMTLKTKKHAEEMYHAIKKAHSDGL----LISHK 59

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
             +   L+S Y +         N     +      II    +   +K+T   I+   +S 
Sbjct: 60  EISFSTLVSIYLEQCKLHH-KPNYYNIEKYTIEKHIIPHFKNCIVKKVTHNEIQDFQKSL 118

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   +    +  +  +F   + ++ +  NPC  V+      + ++ WT +  ++F 
Sbjct: 119 IDKGLENKTINNTMIILSKIFDIGIVEDVLIKNPCAKVKNLSVVKKQMKFWTPDQFKEFI 178

Query: 184 SFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQ----------------HLQNNIFSIKT 226
           S   +     ++ +     +G+R  +      +                ++         
Sbjct: 179 SLIEKDEFIFKVFYTTDYLTGMRLGEILALQWKDLDKFRREINVYKALTYINQEYIITPP 238

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKE-------------TFFINNDKQKMNATQFSIWF 273
           +   ++  + +    + LL      ++             T+      +      FS   
Sbjct: 239 KTKNSVRRISINSKLITLLDEWRQHQKEIFDELGIHQSEETYMFQYKDRPPTKDIFSRKI 298

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           K    +  V     H +R     +    G     +    G  +V     TY       + 
Sbjct: 299 KQICQRGNVEPIRFHDLRHSHVALLIHQGEDYLVIKERLGHSSVSFTMNTYGHLFPNKQ- 357

Query: 332 GIKNSRRISSVV 343
             + + R+  ++
Sbjct: 358 -KETADRLDDLL 368


>gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 407

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 95/310 (30%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSVVQDFELYLSTVAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLDK 400


>gi|296277275|ref|ZP_06859782.1| integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 349

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 101/334 (30%), Gaps = 16/334 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +TK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   ITKRKNKTSTSWQYDVKHPSFKSGKKRKSGFKTKAEASNAAQQLIRDLEDGNNIEDNKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR-- 126
             K   S++    +   L+      +E          G +   + IT    +  +     
Sbjct: 65  -FKEYYSDWINIKNKKQLSSKQFYWYERSIKLFSEFFGENMLVKNITRSEYQRFLNKYAQ 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFK 183
            HT  +  +    +    K A+   Y+  +P   V     +    E  +  T +D     
Sbjct: 124 GHTDETVRKVHGCLARCIKDALYDGYLKKDPTYDVNIKGTEKSKDEKFKYITIKDYLNLL 183

Query: 184 SFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            ++ +  +    F ++L  +G R SD      + L      +    T T  +    +   
Sbjct: 184 EYFKKRDEESYIFLYILGITGARYSDVINMTYKDLNKANGIVHLPGTKTKNSKRDVEVNP 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           + +        +    IN     ++ T  S  FK      G+N    + + +R    +  
Sbjct: 244 RDIMRINSKLARLPRRINGKLFSVSHTSVSKSFKKAKEVIGLNNDNITPYSLRHTHTSYL 303

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              G     +    G  T+ Q   TY+   +  +
Sbjct: 304 LSKGIPIEYISKRLGHSTISQTLNTYSHLLEEHK 337


>gi|240143276|ref|ZP_04741877.1| phage integrase [Roseburia intestinalis L1-82]
 gi|257204754|gb|EEV03039.1| phage integrase [Roseburia intestinalis L1-82]
          Length = 364

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 96/333 (28%), Gaps = 37/333 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y    G  R+       + +    +  A          +             +  Y 
Sbjct: 15  RTYYKDWTGTRRQKTKRGFAKKSDALEWERAF--------KLKDELNINMKFADFVELYL 66

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK---------HT 129
                  +  NS ++ +   + +I+   G     +I    +                 ++
Sbjct: 67  SDIQPR-IKYNSYLTKKHIIETKILPYFGHRKLNEIRPADVIQWQNEIMKLKKDNGEAYS 125

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSE 188
           P+        +  +   AV    +  N         K +++ I  WT+E+ Q F    ++
Sbjct: 126 PTYLKTIHNQLSAILNHAVNMYDLKDNVARKAGSMGKEESKEIMFWTQEEYQAFIEQVAD 185

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
                 AFE L ++G+R  +              +++  K+                   
Sbjct: 186 KPISYYAFEILYWTGIREGELLALTPNDFDFTKKTLRINKSYQRLEGKDVITDPKTPKSN 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
             + +PD     +       +    ++    ++ +         A  AGV +   HG+R 
Sbjct: 246 RVIVMPDFLALEIEDFISRLDGIRNDDRIFTISKSYLHHEMDRGAKLAGVKRIKIHGLRH 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++    G +A  +    G + VD    Y  
Sbjct: 306 SHISLLIHMGYSALAIAERVGHEAVDITYHYAH 338


>gi|254247554|ref|ZP_04940875.1| Phage integrase [Burkholderia cenocepacia PC184]
 gi|124872330|gb|EAY64046.1| Phage integrase [Burkholderia cenocepacia PC184]
          Length = 508

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 112/347 (32%), Gaps = 18/347 (5%)

Query: 7   LPPFVTKERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           LP  V   R   GK   Y F+    R  R           A       +  +        
Sbjct: 143 LPMNVHLFRV--GKVWHYRFQINGTRAQRSTRETVKHRAEAVA---ERAYRQARLWARGD 197

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
               TL+ L+ E+  +      +     + +++    +    D    ++TT  + + +  
Sbjct: 198 APVPTLRELVQEWLAAHESIR-SRAYIRNVDTFGRLHLYGLADVMVDELTTPLVETAMLA 256

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R H  +S   +L  ++V+ KWAVR++ +   P  SV+  K + +         + ++ 
Sbjct: 257 HRRAHAAASVNHWLNLLKVVCKWAVRRKVMPEIPW-SVKSLKVQKKPRATLPVSRVAEWL 315

Query: 184 SFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVEL 237
           +   + ++      +A       GLR S+   A    +  +  +     T       + +
Sbjct: 316 AAVDDYARDCPGLSIAVRLAFGLGLRESEIITARWDWIDWDRGTYTPGITKGREADPIPM 375

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
            +  +  L            +       +       ++      +N  + H +R   AT+
Sbjct: 376 TNWLIDYLRARRQPAGLIVSHRHGHAYRSGFLRPVLRSANAVCQLNGITPHRLRGTFATL 435

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSV 342
            ++ GA+   +      K       Y +           +  R++ +
Sbjct: 436 LSENGASVSTIQRVMRHKDPMTTLRYLEANLATAAFAQASIARLAGL 482


>gi|295103148|emb|CBL00692.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 106/369 (28%), Gaps = 42/369 (11%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R    + K +   G+    + K      ++ + +    + A +  +           + +
Sbjct: 3   RRGENIHKRKD--GRWEGRYIKARTPEGKIQWGYVYGMVYAEVKRVLIQKKAEAGFYNLK 60

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV- 123
           +   T + L   +  S    ++  ++   +       ++          +    +   + 
Sbjct: 61  RTDLTFEALAEVWLHSQR-NAVKESTYAHYSYTLHKYLLPVLSKVPVASLEESFLEQAMQ 119

Query: 124 --------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    SSA + L+ +R + K+A     +     L V  PK   +   P +
Sbjct: 120 QIIAPIDAAHKPLGNSSARECLSMLRRICKYA-AHLRLIRPMELEVALPKAIDQISAPLS 178

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY---------SGLRCSDS-------------CRAG 213
             + Q+   +  E   PR     L            GL+  D              CR  
Sbjct: 179 PAEQQRLYQYVQENPTPRKIGLLLGVELGLRIGEICGLQWGDFDLKLGTLKINRTVCRIS 238

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFS 270
            ++    +     +   +   + +P      +K L         F   N+ +      + 
Sbjct: 239 CENGHTKVVIQTPKTRTSRREIPIPKQLLIMLKKLRGCVSNAAWFLSGNESKPTEPRCYR 298

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-AD 327
              K+   +A V +   H +R   AT    AG     L    G    +   + Y      
Sbjct: 299 KSIKSYLKQATVRQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLT 358

Query: 328 RIRLGIKNS 336
           R R  +   
Sbjct: 359 RKRREMNRI 367


>gi|238026040|ref|YP_002910271.1| phage integrase:phage integrase, N-terminal SAM-like protein
           [Burkholderia glumae BGR1]
 gi|237875234|gb|ACR27567.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Burkholderia glumae BGR1]
          Length = 342

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 102/347 (29%), Gaps = 35/347 (10%)

Query: 1   MTPSLRLP---PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P   P     +   G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   Y +       +  ++  ++ +  ++    GD +   +T
Sbjct: 61  AP-----SSETTRHTFAMLEQAY-RIRELPQKSAATQRMYDLFLSRLAGVIGDRELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              + +   +        +A +    + ++     R   +            +K  G + 
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLN-CGRLWGMMTIANPCAGVRGKKETGRQA 173

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              +D      +       R A +       R SD  R    ++       +TQKTG  +
Sbjct: 174 ILIDDELYAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGAFV 233

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS- 285
           TV++      L+      + +    +           +   +    F     +AG++K+ 
Sbjct: 234 TVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDKAK 293

Query: 286 --AHGVRKFSATIS-----ADAGATAHELMATYGWKTVDQAETYTKG 325
                +R    T        +AG          G         Y +G
Sbjct: 294 FQFRDLRARGVTHKTIDEGLEAG------QRLAGHSGPGMTARYVRG 334


>gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333]
 gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333]
          Length = 380

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 87/306 (28%), Gaps = 40/306 (13%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFD----YRKITTKHIRSGV 123
             L+  Y         L+ ++  ++ S    ++ +    GD        ++    +R  +
Sbjct: 72  AALVERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGADLTRLDLVALRRWL 131

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +       S+  +   S R    WA R   +A +    +  P+         T+ D  
Sbjct: 132 ARQARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPVVLTEADAA 191

Query: 181 QFKS-----------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                                  +   +     E L  + LR S+        +      
Sbjct: 192 TVLDGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTGDVDLRERL 251

Query: 224 IKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWF 273
           ++   K      V       + +      +         +         +++        
Sbjct: 252 VRVLGKGAKERVVPFGLPAARAIEAWISVRPELAGPRSGRALFLGARGGRIDPRVVRDVV 311

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331
                +AGV + + HG+R  +AT     G+    +    G  ++   + YT    +R+R 
Sbjct: 312 HRATARAGVRDLAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRA 371

Query: 332 GIKNSR 337
             + + 
Sbjct: 372 AFRQAH 377


>gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
 gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989]
          Length = 307

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 91/283 (32%), Gaps = 36/283 (12%)

Query: 90  NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           ++  +++    + I    GD    ++  + ++  V  +        +    +  ++++ K
Sbjct: 25  STYAAYQLLIQNHIKPYFGD--LYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILK 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGL 204
           + ++  Y+      +    K++ + +   +K D ++F        +   L     L +G+
Sbjct: 83  FGIKNGYLEYIQIDAKFPSKQEKKELDVLSKADQKKFMEHLRNNFTFKNLGIFICLSTGM 142

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------------ 246
           R  + C      +      IK + T   I +   +     L                   
Sbjct: 143 RIGEICGLRWCDVDTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSE 202

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                      + +  + I+ND + +    +  ++K    +  +     HG+R   AT  
Sbjct: 203 LLKMLKSLNKVVNENYYVISNDIKPIEPRTYRNYYKKLCKQLDIPELKFHGLRHSFATRC 262

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338
            ++ A    +    G   +      Y     ++ +  I    R
Sbjct: 263 IESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDKMLR 305


>gi|251810403|ref|ZP_04824876.1| bacteriophage integrase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806007|gb|EES58664.1| bacteriophage integrase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 349

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 16/334 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           VTK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   VTKRKNKTSSSWQYDVKHPSLKSGKKRKSGFKTKAEATNAAQQFIRDLEDGNNIEDNKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR-- 126
                  ++ K  +   L+      +E          G +   + IT    +  +     
Sbjct: 65  -FVDYYDDWIKIKNKKQLSSKQFYWYERSIKLFSEYFGENMLVKNITRSEYQKFLNQYAQ 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
            HT  +  +    +    + A+   Y+  +P  +V     +      +    ++ +    
Sbjct: 124 GHTDETVRKVHGCLARCIRDALYDGYLKKDPTYNVNIKGTEKAKDEKFKFITIKDYLNLL 183

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             F     +  +    L  +G R SD      + L      I    T T  +    +   
Sbjct: 184 DYFKKRDEESYVLLYLLGITGARYSDVINMTYKDLNKANGIIHLPGTKTKNSKRDVEVNS 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           K +        K    I+     ++ T  S  F+      G+N    + + +R    +  
Sbjct: 244 KDIMHINSKLAKMPRRIDGKLFSVSHTSVSKAFRKAKEVIGLNDNNITPYSLRHTHTSYL 303

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              G     +    G  T+ Q  +TY+   +  +
Sbjct: 304 LSKGIPIEYISKRLGHATISQTLDTYSHLLEEHK 337


>gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 409

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 92/303 (30%), Gaps = 28/303 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITT 116
           K   TL  ++   R           A  +  +++     +           D  + ++T 
Sbjct: 105 KTQMTLMKMLDALRDEVKSRIGIDRAKGTYPAYDFTCRTMREFIETKFKTKDLAFGQLTE 164

Query: 117 KHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + I        + + +   +   +L  ++   K A ++ +           PK+  +  +
Sbjct: 165 QFIHDYENFILDEKGYAVDTVRHYLAILKKTCKRAYQEGHSERFMFQHYVLPKQTVKTPK 224

Query: 173 PWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
              +E  ++ +       +      R  F F  Y+G+  SD+     ++L          
Sbjct: 225 ALCRESFEKIRDVEIAPHRTTHRLARDLFLFACYTGVAYSDAVTVTRENLYTGEDGKLWL 284

Query: 228 KTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
           K             +KLL               +     ++        KA A  AG+ +
Sbjct: 285 KY--RRKKNELRASVKLLPEAVALIEKYHDDSRDTLFPMIHYPSMRNHMKALAVLAGIKE 342

Query: 285 SA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +   H  R   A++   +AG     + +  G   +   + Y +   +     ++  R+  
Sbjct: 343 NLCYHVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKK--LFEDMDRLIE 400

Query: 342 VVD 344
              
Sbjct: 401 ATG 403


>gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus]
          Length = 324

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 56/309 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I EY         A+ +  ++  +  Q I        R +T++H+   +       
Sbjct: 6   FLAYIQEYML---GRHYALRTTQAYIYWIHQYILYHDKKHPRSLTSRHVEDFLTHLVVDR 62

Query: 131 SSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SA +  + ++  +           I   +   R  +  +     T E++ +F +  S  
Sbjct: 63  KSAQKTQSLALNAIVFLCKEIVQEPIELDMQFRRSDKSRKSPTVMTPEEIGRFFNHCSPN 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            +  L ++ +  SGLR  +  R  +Q +  +  S++  +        V +       + +
Sbjct: 123 FK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKL 180

Query: 248 TPIGKETFFINNDK---------------------------------------------- 261
                  ++  +                                                
Sbjct: 181 QQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRR 240

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K  + KA + K  S H +R   AT    +GA    +    G   +   
Sbjct: 241 HHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTT 300

Query: 320 ETYTKGADR 328
           + YT   DR
Sbjct: 301 QIYTHIIDR 309


>gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253]
          Length = 343

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATNLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 279

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 19/267 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRK 127
           +++ + K       A N+  S+  Y    ++         D     I T  I   VE+  
Sbjct: 6   ILTSFEKKLVIQRYASNTIRSYMDYAGLFLKYVDKFASLKDVPIAIIET-FINEKVENEN 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S     + +++ L+     +  +     L    PKR    +  +  ++  +     +
Sbjct: 65  ISASYQKGLVGAIKKLY-----ELILDEKISLDYLYPKRSFSKLPKFFSKEEVRKLLDST 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLL 245
           E  + +     +   GLR ++     +  ++++   I+  ++       V LPD  + +L
Sbjct: 120 ENLKHKAMLMTIYSCGLRLNELLNLRISDIRSSDKIIRINQSKGNKDRIVSLPDKLLTIL 179

Query: 246 AMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                  +          + + +     +  K    KA +    + H +R   AT    +
Sbjct: 180 RDYYQVYKPSHYLFEGEKRNRYSERSVQLVLKKALAKAKIKTEGTVHSLRHSYATHLIQS 239

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G + +     YT   D
Sbjct: 240 GIDVRIVQELLGHENIKTTMIYTHITD 266


>gi|254556124|ref|YP_003062541.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
 gi|254045051|gb|ACT61844.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
          Length = 393

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 109/376 (28%), Gaps = 48/376 (12%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + +  + ++ YY   G+ + I             +      +        +PR      
Sbjct: 6   KRGKKWNARVSYYDDLGNRKFINQGGFRTKREAQEWA---NQNEIDVSNGINPRLGKQLF 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
                ++ ++    +LA +SR+ ++     +          +IT    +  +        
Sbjct: 63  TDYFLKWYQTYKEPTLAKSSRLRYQYTLGIVNNYFAGKRLDEITRTDYQKFLNDYANPVG 122

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER------PKRKTEGIRPWTKED 178
            +P S          ++   ++A+    +  N  +  +       PK          ++ 
Sbjct: 123 RSPRSLSSSEKVNVQIKSAVQYAIDDGIIKRNFTVHTKISGRPEKPKEMKYLDGKDAEKL 182

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
            +  +S  +     +L     L +G R S+           +  +++  KT         
Sbjct: 183 TRALESDLTFAHLTKLMALVSLQTGARYSEVAGLTWDCFSFDFKTLRINKTWDTLQRNGF 242

Query: 231 -------TIITVELPDGFMKLLAMTPIGKET-------------FFINNDKQKMNATQFS 270
                  +   +++ D    +L      +                FIN   +  + T  +
Sbjct: 243 ADTKNEQSKRLIKITDHLADILKSFHALQIIKLEELGIDNPLDLIFINQYGRVPDNTSAN 302

Query: 271 IWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD- 327
                   + G  + + HG+R   A+     G + + +    G          Y+     
Sbjct: 303 QTLHRVLKRIGSKDITFHGLRHTHASYLIYKGVSIYYISERLGHSNYSTTIRVYSHLLRE 362

Query: 328 -RIRLGIKNSRRISSV 342
              +  +K    +SS+
Sbjct: 363 MEKKETVKALVALSSM 378


>gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3]
 gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 21/278 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVES 125
           + L + Y         + ++  S+ +  +  +    +  +  IT                
Sbjct: 6   RNLANRYLNFLSAR--SKDTLKSYRASLNIFMNFFQEKSWETITIDDALFFYNNYRSHNG 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    S+ I+ LT +   ++WA+  +Y+  NP     +  R     R    ++  +    
Sbjct: 64  KPIQISTTIRRLTDVNRFYEWAIENKYLINNPLKLYVKTLRPQLKERQCLSKNQAKLLLS 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             E     +   FL+ +G+R S+          L +    IK+ K      V + D  + 
Sbjct: 124 KIEDYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLL 183

Query: 244 LLAMTPIGKETFFINNDKQKMNATQF----------SIWFKAKATK-AGVNKSAHGVRKF 292
            +      +E      D+  +  + +            + +  +     +  + H +R  
Sbjct: 184 HIKQYLKYREFLNPKIDRLFLTKSGYKLSEGQISDYRRYLRTISKDILNIIVTPHVLRHT 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             T++ ++      L    G   V+   TY   +   R
Sbjct: 244 FGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFR 281


>gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
 gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM
           14600]
          Length = 405

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 102/378 (26%), Gaps = 50/378 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G+  + +            P       A    +       +       K 
Sbjct: 24  RYLYKYIDSFGETQFIYSWKLVS--TDRVPAGKRDCIALREKIAEIQKDVQDGIDVIGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSG---VE 124
            TL  L ++  ++A   ++  N++   +   + +   K G      I     +     + 
Sbjct: 82  MTLCQLYAK--QNAQRPNVKANTKTGRKYLMEILKNDKLGARSIDSIKPSDAKEWAIRMS 139

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                 S+   +  S+R  F  A++ +YV  NP            T      T E   + 
Sbjct: 140 ENGFAYSTINNYKRSLRASFYIAIQDDYVRKNPFDFQLNTVIDDDTVPKTILTLEQEARL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIF----------------- 222
             F    +     ++ +L    +GLR S+ C   V  L                      
Sbjct: 200 LDFAKSDTVYHKNYDEILILLKTGLRISELCGMTVTDLDFENHLILVNHQLLRNTELGYY 259

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNATQFS 270
               +   +   V + +   + L      +                 N +     A  F+
Sbjct: 260 IETPKTKSSERQVPMVEVTCQALKRVLAVQNQNECVEIDGYSNFLFLNRNGYPKTACDFN 319

Query: 271 IWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +    K          + + H +R    T  A+AG     L    G   +     Y 
Sbjct: 320 SILRNLIKKYNKCHEEKLPHITPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYY 379

Query: 324 KGADRIRLGIKNSRRISS 341
             A      ++  +R+  
Sbjct: 380 AHAT-CNSAMEEMKRLEK 396


>gi|323972727|gb|EGB67928.1| phage integrase [Escherichia coli TA007]
          Length = 399

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 109/340 (32%), Gaps = 30/340 (8%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYP------HESTFIPAYMSALTGSTPKREYINSPRKK 67
           R G   +  R    G  + I +                 +  A+      +   ++ R  
Sbjct: 42  RTGNKRFLLRYTFHGTKKSISIGRFPEIDVGTARQIARRHKEAIALGNDPKAERDNYRAM 101

Query: 68  PTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P TL     + Y           +     + +   I  + G   Y  +  + I+  +   
Sbjct: 102 P-TLSEFFHQTYV--PFIKRHKKSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDM 158

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                   ++ PS+  + L  ++ + ++A+RQ+ +  N    +   K   +  R +  ++
Sbjct: 159 LEGRIHGQQYAPSTCNRALAILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADE 218

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++     ++            LL +G R S+      +H+     ++    T    +  
Sbjct: 219 IRRILDAATQYPNKAAGGLIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRT 278

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKS---AHGVR 290
           +      L  +  I +          K N          ++    + G++K+    H  R
Sbjct: 279 VYLSDAALSIIDAIPRVGSNPYLFAIKDNGKPISEPRWAYEKILAQCGIDKNEVCFHTTR 338

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
              A++   +G  + +++ A     ++   E Y K     
Sbjct: 339 HSVASLLVSSGQFSLYDVKAQLAHASIQSTERYAKLTPER 378


>gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
 gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda
           SM-A87]
          Length = 388

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/377 (10%), Positives = 106/377 (28%), Gaps = 46/377 (12%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K++ + GK   Y     G +       +      Y+     + P +       K+  
Sbjct: 4   HLRKKKLKSGKTSLYIEYYKGHKTTAEGKIKHLREFEYLELYLTTNPTKVSEKKKNKEQL 63

Query: 70  TLKW--------------------------LISEYRKSAHWGSLAVNSRISF---ESYFD 100
            L                             +  Y +          +  ++   + + +
Sbjct: 64  ELAEQILAIRKASIYQGKYKIQNNSKGRTSFLDFYEEKKEERYQTKGNYDNWDAAQKHLE 123

Query: 101 QIIR---KSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
                     + D   I         +     ++  + ++   +    +   + A  + Y
Sbjct: 124 NYCPNHISFNEVDIDFIKGFKKYLDTVAVTKSNKNLSQNTKHTYFNKFKAAMRAAFEEGY 183

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  N    V+            T +++++           + AF F   +G+R SD  + 
Sbjct: 184 LKENLIAKVKGFAMGESKREYLTSDELKRLAKTPCNIQVFKDAFLFSALTGIRWSDIHKL 243

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNA 266
               +++        +   I+  +     M+ L ++   +                   +
Sbjct: 244 TWSEVRDEGIDKSDNEIFRIVFKQKKTEGMEYLYISKQARRLLGKRSEPKDRVFTNLRYS 303

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++        AG+  + + H  R  +A +  + GA  + +    G K +   E Y K
Sbjct: 304 AYMNLQLLRWCMAAGISKHITFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAK 363

Query: 325 GADRI-RLGIKNSRRIS 340
             D+  +       ++ 
Sbjct: 364 IIDKKMKEAANLVPKLD 380


>gi|301299613|ref|ZP_07205874.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852800|gb|EFK80423.1| putative phage tail component, N-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 381

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 127/369 (34%), Gaps = 55/369 (14%)

Query: 12  TKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            K +T+ G +++ ++         G  +       +           +        ++++
Sbjct: 5   RKYKTKKG-MLWRYQILVGTDTVTGKRKYKTKGGFYTKKEAKLAADEVEKKINNPNFLDN 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   +   +  +     +  +S  + E  +  +I+   G+    +ITT   +  
Sbjct: 64  ---ENITFGEVYERWIANYKLT-VKESSFYTVELQYKSKILPILGNKKINQITTIECQDL 119

Query: 123 VESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------EGIRPWT 175
           +      P  +       +  +FK+A + + V  +P  SV  PK              +T
Sbjct: 120 INHWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTSSVIIPKASRQFSNLEYSRNYYT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           +++++ F  +  +  + ++   F L  +SG+R S++       +  +   I   KT    
Sbjct: 180 RDELKTFLEYAEKHEKYKIYVLFRLLAFSGIRKSEALALTWNDINFDKAQITINKTIILV 239

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------- 267
                       +  TV +    + +L+   + ++   +      ++             
Sbjct: 240 SKVKVTTPKTKSSNRTVFIDKKTLSILSEWRLRQKKELLQKGFNALSPNQLIFPDKNNHY 299

Query: 268 ----QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
                 S      +  + ++  + HG+R   AT++A  G +  +L A  G   V+   + 
Sbjct: 300 IIPTTISKMMNRVSEGSNLHHITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDV 359

Query: 322 YTKGADRIR 330
           YT   D  R
Sbjct: 360 YTSITDEQR 368


>gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 380

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/338 (8%), Positives = 77/338 (22%), Gaps = 67/338 (19%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK----- 127
           +  +    H    + N+  ++             G   + ++  + +   V   +     
Sbjct: 42  VEAFLSHLHAIERSPNTVKAYAHDLRDWFEFLDRGGLVWSRVRLEEVGRFVAWLRLPAAG 101

Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          + ++  + L+++   +++  R      +   + +R K      RP
Sbjct: 102 RVGNVSALPTAESMCSEATVNRKLSAISAFYEFHQRHGVDLGDLLTTWQRHKGHGGSWRP 161

Query: 174 WTKEDMQQFKS-------------------------FWSEGSQPRLAFEFLLYSGLRCSD 208
                  + +                             +  + R  F  L  SGLR  +
Sbjct: 162 LLAHLGSRPERSRRIRLRAQRRIPDTLDTELVAAIVAACDRLRDRFLFSLLAASGLRVGE 221

Query: 209 SCRAGVQHL-------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP------ 249
           +       +               N    K       +   +   +   L          
Sbjct: 222 ALGLRHSDIDAAARLVTVVPRVNTNRARAKGGGRQVPVPGAVIRLYADYLHGEYGELDSD 281

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                 +       +              + G+    H  R   AT           +  
Sbjct: 282 YVFVNLWSGPIGYPLTYASVYDLVCRLRERTGIMFGPHTFRHSYATELLRRQVPVEVVAH 341

Query: 310 TYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSVVDS 345
             G  ++    + Y     +  R  +  +  ++    S
Sbjct: 342 LLGHASIATTSDAYAHLKVEDTRRALVAAGWLADRDGS 379


>gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii]
          Length = 320

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 79/300 (26%), Gaps = 51/300 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  S+  +  Q +          + ++ +   +         A +  +
Sbjct: 10  KEYMQVRYYANKTIESYIHWITQYVVFHNKTHPNLLGSRDVEQFLTYLAVEKKVATKTQS 69

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
                  +  R+  +     L ++  K + E   P      +  + F     + +L  + 
Sbjct: 70  LAFEALSFLYREI-IKEPLTLEMKFQKSQLERKLPIVMTREEIKRFFNHVDPKYQLHIKL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  SGLR  +  R  VQ +  +  +++  +                              
Sbjct: 129 LYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLIKEQISLAKRYY 188

Query: 229 -TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQFS 270
                            L          F  +     NA                 T   
Sbjct: 189 DKDMEAKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLLRRHHINETSLQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              K    +A + KS   H +R   AT   ++GA    +    G   V   + YT   DR
Sbjct: 249 RTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHVLDR 308


>gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
 gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1]
          Length = 282

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 82/277 (29%), Gaps = 27/277 (9%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKW 146
            ++   + +    +          K++   +R  V    ++    S    + +++  F+ 
Sbjct: 8   PSTIACYRNAIAHLAEHFACSP-EKLSEAQVRQYVLLRRQQLQLGSMRPIVGALKFFFRV 66

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            V +++  +      +               +        +  S  ++ F  +   GLR 
Sbjct: 67  TVPRDWPTLQAIRFPKSNTLPMVL-----VPERCWQLIDATVASHLQVIFRAMYSCGLRG 121

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----- 261
            D      Q +  +   ++   T      E+P     L A           N        
Sbjct: 122 VDVRHLRPQDVDADRMMLRVCTTKGHRQREVPLPQATLDAFRAHWATHRNPNWLFPATQR 181

Query: 262 --------QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMAT 310
                   Q ++A      F       G      + H +R   AT   DAG     L   
Sbjct: 182 NTPASKADQPISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGY 241

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            G K +   E Y       RLG + +R+I + + + D
Sbjct: 242 LGHKNLQATEVYLHLT---RLGDERARQIVAQIMNGD 275


>gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17]
 gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17]
          Length = 332

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 85/311 (27%), Gaps = 38/311 (12%)

Query: 68  PTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTK 117
             TL  L+  +   +      ++ N+  S+   F   +    ++ G          I   
Sbjct: 3   TPTLPALLERFFIDRLMRQRHVSANTIASYRDTFRLPLVFTQKQLGKPPSSLNLEDIDAT 62

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + + +E     R  +  +    LT++R  F++   +E         V     K +  R 
Sbjct: 63  LVSAFLEDLEVNRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQIQRVLAVPDKRQDRRI 122

Query: 174 WTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                  + +            G +        + +GLR S+        +     +   
Sbjct: 123 VHFLARPEIEALLAAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGLDRASVVLGSGAHVH 182

Query: 227 Q--KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATK 279
              K        L     + +               F     ++++A          A  
Sbjct: 183 CLGKGRKERCTPLTRTVSRAIQEWLKEPARCDSKALFSTRQGRRLSADAVQYLVANYADI 242

Query: 280 AGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              +         + H +R  +A     AG     +    G ++V+  + Y      ++ 
Sbjct: 243 TRQHCPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAHMALKE 302

Query: 332 GIKNSRRISSV 342
                 +I  +
Sbjct: 303 A--ALAKIDPL 311


>gi|313889062|ref|ZP_07822720.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312844935|gb|EFR32338.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 342

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 97/344 (28%), Gaps = 31/344 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +   +  HGK          ++       +      +   ++    + E          
Sbjct: 15  GIVSYKNSHGKW---------KQKSKGGFDKRKDANLWAKEMSFELQRLEK-KGILGNEY 64

Query: 70  TLKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SR 126
           TL+ +   Y       +     +++  ++S          + D + I +  +   ++  R
Sbjct: 65  TLQEVFETYLSVMDKKNNKDTSSTKRIYKSQMKLFKDFW-NKDIKNIKSTDLLKFIDHKR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           K T  +    + ++   F +A+++  V   NPC  + + K   +    +  E        
Sbjct: 124 KVTGCAYNANIATLSTTFNFAIKKMNVCESNPCDILYKDKSTKDERIKFITESFYSELLD 183

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---------SIKTQKTGTIITVE 236
            ++  + +L    L  +G+R S+      Q + +            + K           
Sbjct: 184 EAKKEKLKLFLRMLYETGMRISEGLGVCTQTVIDCSIKIDRQFNSTNKKITYILKTDNSY 243

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                   L                  +   Q   + K          S H  R   AT+
Sbjct: 244 RTAPISAELYRDLKNATFDIEGRIFHDLTYIQVYYFLKKH------KTSPHCFRHTRATL 297

Query: 297 SADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRI 339
              AG     +    G K       Y  K  DR+       R+I
Sbjct: 298 LVSAGIDLTIVAHIIGDKIETILNEYVEKNEDRLESSYDKIRQI 341


>gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001]
 gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001]
          Length = 323

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 78/306 (25%), Gaps = 55/306 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           LI  YR+       A  +  ++E +  + +R       R++ +  + + +       + +
Sbjct: 10  LIQRYREELQTRHYARRTVTTYEQWLRRYLRFHSLRHPREMGSAEVNAFLTHLAVDLQVS 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186
            S+  Q L+++  L++  + +          V R +         T E+++         
Sbjct: 70  ASTQNQALSALLFLYRELLER----DLELAGVVRARTPRRLPVVLTVEEVRSVLQRLDGT 125

Query: 187 ---------------SEGSQPRLAFEFL---------------------------LYSGL 204
                           E  + R+                                L   L
Sbjct: 126 EALVAGLLYGSGLRLMEALRLRVHDLDFGRQELTVRNGKGGKDRRTLLPRRLAEQLRPHL 185

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           +   S              +            +  G+  +                +  M
Sbjct: 186 QEVKSIHQQDLAEGWGRVQLPHALGRKYPHAPVEWGWQWVFPQQTRWCNPASGEQGRHHM 245

Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + +      +     AG+    +   +R   AT   + G     +    G   +     Y
Sbjct: 246 DPSLIQKAVRRAVLAAGISKPATCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTMIY 305

Query: 323 TKGADR 328
           T   +R
Sbjct: 306 THVLNR 311


>gi|46202519|ref|ZP_00053088.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 99/306 (32%), Gaps = 10/306 (3%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWG 85
           +  G   R     + T    +   L     +     ++   + TTL  +++ YR+     
Sbjct: 3   RRKGTAPRSKSFDKKTDAEKWARDLEAEVDRCGFLPDTKLAEDTTLADIMTRYREEVTPR 62

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVL 143
                 +I        +           +++  I +  + R  +  P++ ++ + ++   
Sbjct: 63  KRGA--KIEVFRINAMLRHDIMHRTLALLSSSDIAAYRDERLQSVGPAAVVREIATISQA 120

Query: 144 FKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              A++   +    NP   V RP       R    ++ Q+  +    G    L    +L 
Sbjct: 121 IDTAMKDWNIYLVRNPAKLVRRPSLPRGRDRRLEGDEEQRILAACDRGRIRWLKPMVVLA 180

Query: 202 --SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
             + +R  +        +  +        T    + ++P     +  ++ + ++      
Sbjct: 181 VETSMRRGEMLSLRWSDIDLDRRVAHLSMTKNGSSRDVPLSTRAVETLSGLMQQPDRDPE 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++     + +     + G+   + H +R    +   + G    E+ A  G KT+  
Sbjct: 241 KVFMVSENAVRLAWDRLRNRIGLENINFHDLRHEGVSRLFEKGLDVMEVSAISGHKTLTM 300

Query: 319 AETYTK 324
            + YT 
Sbjct: 301 LKRYTH 306


>gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19]
 gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492]
 gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  + +          A  +  ++      +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKTRVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +           +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKRLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFRDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIEKYRDDTRTTLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTP-KRL-FEDMDRFVE 400


>gi|153001893|ref|YP_001367574.1| phage integrase family protein [Shewanella baltica OS185]
 gi|151366511|gb|ABS09511.1| phage integrase family protein [Shewanella baltica OS185]
          Length = 338

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 105/341 (30%), Gaps = 43/341 (12%)

Query: 7   LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64
           LPP V   R R GK I Y  ++ +  ++             AY  A+   + +       
Sbjct: 11  LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVAEFSLE------- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T+  L  EY  SA++  LA  ++   +   +   +  G     +I   HIR  ++
Sbjct: 63  ----YTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R  +  + A   L +  V+F W   +     NP   V+   +     R     D +   
Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGVK---KFKVKARDRYITDAEFNA 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                  + ++A E       R  D  +     +  +   I+  KTG            K
Sbjct: 176 LLSCAEIRLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235

Query: 244 LLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291
            +A                 +   K+        +K    K  ++        + H +  
Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-- 293

Query: 292 FSATISADAGAT-----AHELMATYGWKTVDQAETYTKGAD 327
                    G +       E     G KT+ Q  TY +  +
Sbjct: 294 ------KAKGVSDFEGTLSEKQQYSGHKTLAQVNTYDRKVE 328


>gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
 gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM
           30120]
          Length = 343

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 16/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+R+R     +     A+   L  +    E+    + K   L  L   + K     + 
Sbjct: 36  RNGKRVR-RKFQKKHEAIAFEKYLIANHQSDEWKPKLKDKRR-LSELAEIWWKYHGKNNE 93

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
               R       +++I+  GD     I    +      R       S+  + L  +R +F
Sbjct: 94  HAAHRQ---REVNRVIKLMGDPAASSIDKSTLTYYCHDRLASGVKASTINRELVQLRGMF 150

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
            + +       +  ++  +  ++      +      +       G   RLA  F L +G 
Sbjct: 151 TFLISSGLFLSDNPIAGHKKLKEDIPEMSYLTTFEVKKLLAELSGDNYRLA-IFGLSTGT 209

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S++ R   +H+ +   ++   K G   T+ L    + ++                   
Sbjct: 210 RWSEAKRVKCEHIVHKRVTLFKTKNGKKRTIPLSQNVIDIVTKDRTAFLFPNA------- 262

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   F    +         ++ H +R    T     G     L    G   ++Q  TY  
Sbjct: 263 SYKDFRNALRKVKPDIPKGQATHIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYAH 322

Query: 325 GA 326
            A
Sbjct: 323 FA 324


>gi|46203230|ref|ZP_00051840.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 317

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 101/306 (33%), Gaps = 10/306 (3%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKWLISEYRKSAHWG 85
           +  G   R     + T    +   L     +     ++   + TTL  +++ YR+     
Sbjct: 3   RRKGTAPRSKSFDKKTDAEKWARDLEAEVDRCGFLPDTKLAEDTTLAEIMTRYREEVTPR 62

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVL 143
                 +I        +           +++  I +  + R  +  P++ ++ + ++   
Sbjct: 63  KRGA--KIEVFRINAMLRHDIMHRTLALLSSSDIAAYRDERLQSVGPAAVVREIATISQA 120

Query: 144 FKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
              A++   +    NP   V RP       R    ++ ++  +    G    L    +L 
Sbjct: 121 IDTAMKDWNIYLVRNPAKLVRRPSLPRGRDRRLEGDEERRILAACDRGRIRWLKPMVVLA 180

Query: 202 --SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
             + +R  +        +  +        T    + ++P     +  +T + ++      
Sbjct: 181 VETSMRRGEMLSLRWSDIDLDRRVAHLSMTKNGSSRDVPLSTRAVETLTGLMQQPDRDPE 240

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               ++     + +    T+ G++  + H +R    +   + G    E+ A  G KT+  
Sbjct: 241 KVFMVSENAVRLAWDRLRTRIGLDNINFHDLRHEGVSRLFEKGLDVMEVSAISGHKTLTM 300

Query: 319 AETYTK 324
            + YT 
Sbjct: 301 LKRYTH 306


>gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004]
 gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004]
          Length = 305

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 95/282 (33%), Gaps = 32/282 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR + +S+ + + +  G     D  +  +   H+++ +E    +   P++   +L +
Sbjct: 24  SKRSRQTMKSFLNIVAKMLGYQNVQDCTWNALRRHHVQAIMEMLSDSGKAPATINTYLAA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                 F ++G 
Sbjct: 84  LKGVALEAWTMKQIDTDSFQHIKQVRSVRGNRLPKGRALDRYEIKTLFFTCENDFSTKGL 143

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +       L+  GLR S+     ++H+     +++            +P+G  + L    
Sbjct: 144 RDAAIIGVLVGCGLRRSEIISLDLKHVIRREQALRVMGKGNKERLSYMPEGTWERLNRWI 203

Query: 250 IGKETFFINNDKQKMNAT-----------QFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                 +      ++                    + +  ++G+ K + H +R+  A+  
Sbjct: 204 DEIRGDYAGPLFTRIRRDDDVTDNRLSDQAIYHILETRRIESGLEKFAPHDLRRTFASAM 263

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            D G     +    G  ++   + Y +  D        ++ +
Sbjct: 264 LDNGEDIVTVKDAMGHSSITTTQKYDRRGDER--LKNAAKNL 303


>gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 89/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  + +          A  +  ++      +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +           +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKRLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFWDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIEKYRDDTRATLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R 
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTP-KRL-FEDMDRF 398


>gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 289

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 85/266 (31%), Gaps = 21/266 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV- 142
             + ++   + +    ++    +     R +    +R  +   +   +S       +   
Sbjct: 14  GRSPHTVRGYLADLRSLLAHLEERGRSVRDLDVDLVRGWLSRARDAGASRATVARRVAAV 73

Query: 143 --LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196
               ++  R+  +A +P   +  P ++        +       +  +EG+    + R   
Sbjct: 74  RAFTRFLHREGVLAADPGPRLASPAQQRSLPTVLDERQAAAALAGETEGTPTGLRRRAVV 133

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF 255
           E L  +G+R ++ C   +  +     +++   K     TV +    +  L     G    
Sbjct: 134 ETLYATGVRVAELCALDLADVDRERDTVRVLGKGAKERTVPVGGPALDALDAWLSGGRPE 193

Query: 256 FINN----------DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                            ++   Q      A     G + + HG+R  +AT   + GA   
Sbjct: 194 MAGATSGSALFLGARGGRLGVRQAREDVHAHLRAVGADSAPHGLRHSAATHLLNGGADLR 253

Query: 306 ELMATYGWKTVDQAETYTK-GADRIR 330
            +    G  +    + YT    +R+R
Sbjct: 254 SVQEFLGHASPRSTQIYTHVSVERLR 279


>gi|254491262|ref|ZP_05104443.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463775|gb|EEF80043.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 394

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 95/336 (28%), Gaps = 31/336 (9%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSAL------TGSTPKRE 59
           P      T  G   +   K   G  +RI L      T   A   A+              
Sbjct: 33  PGFALRVTSGGAKSFIVEKRVNGRVKRITLGRYGNLTVEQARTEAMKILGKVATGGDPIA 92

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +  +L  +  +Y  +     L  ++   +    +            +IT   +
Sbjct: 93  EKRERYARSVSLMEVYRDYLATR--KDLKDSTIHDYNRIMNGAFEDWLKKPIAEITKDMV 150

Query: 120 RSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
                   K + + A   +  +R L   A+ +   A    + +  P  +    R W K  
Sbjct: 151 ERKHRELGKRSEARANNSMRVLRALINHAMSKYEDAKGNPIIIVNPVERLSQTRAWYKVE 210

Query: 178 -------------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                          +       E ++  L F   L++GLR +++ +   +++     + 
Sbjct: 211 RRKNLIKPHQLKGWYEATLQLNQETTRDYLHFL--LFTGLRRTEAAQLRWEYVNFEDQTF 268

Query: 225 KTQKTGTIITVELPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               T    +  LP        L+      +  F   +D +              +  +G
Sbjct: 269 TIPDTKNGESHTLPFSNFIESMLIRRHESRQSHFVFPSDSKTGYIQDPRKAILRVSELSG 328

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           V    H +R+   TI+      A+ L      K   
Sbjct: 329 VEFRLHDLRRTFITIAESRDIPAYALKRLLNHKDSS 364


>gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 424

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                GV+ +      ++   + +             L++ P+ K      +     + T
Sbjct: 293 KDRTEGVEGVYLPNALVRKYPSASKDWNWFWLFPSPALSIDPMCKVKTIRRHHL---SGT 349

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             S   K K  + G+ K  + H +R   AT   + G     +    G + +   + YT  
Sbjct: 350 GLSRVLKEKCKEVGIKKRCTVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHV 409

Query: 326 AD 327
             
Sbjct: 410 LS 411


>gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697]
 gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 89/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  + +          A  +  ++      +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +           +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKRLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFWDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIEKYRDDTRATLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   +   + Y +     RL  ++  R 
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTP-KRL-FEDMDRF 398


>gi|218442469|ref|YP_002380790.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175240|gb|ACK73971.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 304

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 38/306 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             TL  L++++ +      L+ N+  S+ES    ++++ G      +T + +   +    
Sbjct: 2   TITLASLVTQFLERPQ---LSQNTIRSYESTLMPLLQQLGSVKVDLLTRQQLIEYLSGLT 58

Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           H + ++  +    ++ L  +AV Q ++  NP   ++  K   E     + ++  ++ +  
Sbjct: 59  HLSYTTYNRHQAILQSLLNFAVEQGFLTSNPLSGLKSRKPDREKGEH-SSDEPIRYLNPE 117

Query: 187 SEGSQPRLAFEFLL---------------YSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230
                 RL  E                   +G R ++     ++ +   N       K  
Sbjct: 118 QIAVLYRLLKENSYKPQIYRLQTLVTLLHRTGARIAEILALDLEEIDLKNRRFQVIGKGN 177

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKA 280
                   D   K+L +          +              +++       +     K+
Sbjct: 178 KQRWCFYSDDVAKILEIYLKHYRYTEHSALFTAQQPLSKEVSRLSYRTAYRDWSNLIAKS 237

Query: 281 GV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            V      H +R   AT     G     EL A  G + +     Y K         + ++
Sbjct: 238 PVLKGFRLHDLRHTFATE--RVGLMGIEELRALMGHENIQTTLRYQKVTSSR--AEEVAQ 293

Query: 338 RISSVV 343
           +  S++
Sbjct: 294 KALSIL 299


>gi|119025957|ref|YP_909802.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765541|dbj|BAF39720.1| phage integrase [Bifidobacterium adolescentis ATCC 15703]
          Length = 435

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 94/359 (26%), Gaps = 51/359 (14%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+  R+      T   A                    +P T+   +  +        L 
Sbjct: 75  TGKDHRVSGFG-RTRSQAEARLKEKLAEFDRTHRVGYVRPPTVAEWMDHWLTDVCKPRLK 133

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
             +  ++ S   + I+   G     ++   H R      ++ +  +  +A     ++   
Sbjct: 134 PRTWGTYASVIANNIVPSIGAVRLDELKPAHFRRMERYVMDEQGKSSGTAGSAWRTLHKA 193

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            + AV +  +  NP +    P+   +     T E      +  ++ +  RL +     +G
Sbjct: 194 LEDAVLEGVIERNPAVKGTAPRVALKERAALTPEQAADLIAAETDDT-WRLMWMLAFMTG 252

Query: 204 LRCSDSC-----------------------------------RAGVQHLQNNIFSIKTQK 228
           +R  +                                           L N ++  + + 
Sbjct: 253 MRQGERLGLTEDELRRDGDRLIILVEWQAQHLTKREVEGLPKGVECTPLGNGMYRTRPKT 312

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV- 282
                 + LP+     L               F ++    +        +     + G+ 
Sbjct: 313 EKGRRAIPLPEALADQLLAYIERHGVNGDGLVFHDDRGLPLTGCVERRRWYRALDRVGLG 372

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSRR 338
                H  R  +ATI    G       A  G   V    E YT    DR+        R
Sbjct: 373 HEYVPHSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVER 431


>gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 435

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 101/329 (30%), Gaps = 38/329 (11%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRISFE 96
           F               E I        T K ++  +               A  +   +E
Sbjct: 77  FQARQKLIEDDERITAEAIRDLVTGKDTRKMILEVFADHNKQMEALVGKDYADGTLERYE 136

Query: 97  SYFDQIIRKS------GDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKW 146
           +  +             D   RK+    I       K       ++ +++L++ + +   
Sbjct: 137 TSLEHTKAFIQWQYQVNDLYIRKLDHFFIEQYAFWLKTVRNCNHNTTMKYLSNFKKIVLI 196

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
            V+ +++  +P  + +   ++     P ++ ++Q   +   E  +    R  F F  Y+G
Sbjct: 197 CVKNKWLQGDPFTNFKM-SKREVMREPLSEWELQAMINKDFENDRLNNVRDIFVFSCYTG 255

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLLAMTPIGKETFFIN 258
           L  +D  +     +   +   +   T    T       +     +LL       +    +
Sbjct: 256 LAYADVKKLKRSEINMGVDGEQWIFTPRQKTDTPCPIPLLPVALQLLEKYAHYPKCINQD 315

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKT 315
                +   + + + K  A   G+NK  + H  R   AT I    G     +    G   
Sbjct: 316 RVLPVLTNQKMNAYLKEIADLCGINKVLTFHLARHTFATTICLSNGVPMETVSKMLGHTN 375

Query: 316 VDQAETYTK------GAD----RIRLGIK 334
           + Q   Y K      GAD    R +L + 
Sbjct: 376 LKQTLHYAKTLHSKIGADMASLRQKLAVN 404


>gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 290

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 19/240 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           +  S+    +Q +    +       +    I + +   K      ++  + L+S++  + 
Sbjct: 23  TLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYH 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
           +   ++ +  +P   +  PK + +     T E +    S       +G + +   E L  
Sbjct: 83  YLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQVDMLLSLDFGDDEKGLRDKALIELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +GL+ S+     ++ +  +   +  +       + +    ++ L              + 
Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSHAIEALKNYIEKGRKAKNGENT 201

Query: 262 -------QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYG 312
                  QK+         +    K   G   + + +R+  A      GA    +    G
Sbjct: 202 LFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLG 261


>gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 305

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 75/276 (27%), Gaps = 16/276 (5%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVES 125
             T +    E+         +  +   + ++     ++  D   D   +    +      
Sbjct: 3   TITWQDAFQEFLLCKQAEGRSPLTLRDYHNHVPAFFQEHPDTWPDVHALKRAVVAHFAGL 62

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQF 182
           R+ + +        ++  F W VR+EY+  NP       +             K  ++  
Sbjct: 63  RERSATHYNLRREYLKAFFSWCVREEYLPKNPVDGIPKRKNDGTPRNLDDQTLKRLLELP 122

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELP 238
                 G +        L +G+R  ++ +    H       +             TV + 
Sbjct: 123 DKSTYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATAKTRTARTVVMS 182

Query: 239 DGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
               K +                 F     + M+   +           GV  + + +R 
Sbjct: 183 PQTAKAIRRLLSVRPADWTDDVPVFATYSGRPMDRNMWGKRLAQYGRTLGVRITPYMLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            SA +    G     L    G  ++   + Y   AD
Sbjct: 243 SSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 278


>gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83]
 gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83]
 gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83]
 gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83]
          Length = 409

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 80/263 (30%), Gaps = 17/263 (6%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I +K    D    ++T + I        + +  T  ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVDDKGLTIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191
           L  ++ + + A ++ Y           PK++ +  +  ++E  ++ +       +     
Sbjct: 189 LAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTP 249
            R  F F  Y+G   +D+      +L  +       K             +  + L +  
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIE 308

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
              +           +        K  A  A +  + + H  R   A++   +AG     
Sbjct: 309 KYNDDTRPTLFPMLYHPN-LRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   +   + Y K   + 
Sbjct: 368 ICKMLGHSNLQTTQRYAKVTPKK 390


>gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
 gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus
           vestibularis F0396]
          Length = 388

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 121/384 (31%), Gaps = 60/384 (15%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
           + + + + G  +Y            G+++           +                   
Sbjct: 3   INEIKKKDGSTVYRTNIYLGVDVITGKKVTTKVTARTKKELKTKAQQAHFDFKANGSTRY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T + L S +  +    ++ VN+R + +S  +  ++   G+F   K+TT  I+S 
Sbjct: 63  KEVVIETYEELASSWWDNYK-NTVKVNTRNTQKSLLNNHVLPLFGEFKLNKLTTPVIQSM 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +    ++ ++          +  T  + + ++ V  + +  NP  +V  P+   +  +  
Sbjct: 122 MNKLANSTNTGEVGAYLHYGKIHTLNKRILQYGVILQVIPTNPANNVVLPRNTQKDKKAK 181

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            K         +            +       ++FLL +G R +++       +      
Sbjct: 182 VKHFNNDELKQFLTYLDSLDNSKYKNYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                    ++     +       +++    + +L      +                + 
Sbjct: 242 VHITKTLNCDMKLNSPKSKAGYRDIDIDQQTVTMLKRYQRKQTQEAWKLGRTETVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                N    +   K    KAGVN    HG R   A++  ++G    EL    G  T+  
Sbjct: 302 INAYPNYKAVAGRLKTHFKKAGVNNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSTLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341
              TY+       L  +N+++ +S
Sbjct: 362 TMDTYSH------LSKENAKKATS 379


>gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 89/281 (31%), Gaps = 24/281 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           T    + ++ +       A+ + + +    + +           D  ++++  + I   V
Sbjct: 112 TFDAYLKDFEEKRAGKDRAIGTLVCYRKARNYLAAFLRYEYKVEDIPFKELKREFIERYV 171

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R+  P S    +  ++++   A +  ++  +P           +  R  ++ ++
Sbjct: 172 VYLSTVRRMLPGSIHTPIKKLKLMTYTAFKNGWITTDPFSGFRISVTYRD-RRFLSESEL 230

Query: 180 QQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           Q   +      +    R  F F  ++GL  +D  +   + +  +             T  
Sbjct: 231 QAVMNVRLPNYKTAIVRDIFVFCCFTGLCYADVKKLSREDIHTDERGDMWIID--QRTKT 288

Query: 237 LPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289
                +KLL +     E +       +      +    ++  +  A  AG++ +   H  
Sbjct: 289 GTQFRVKLLPVAKQLVEQYSRLQLPDDKVFPVKDDNSMNMSLRHVARHAGLSFNPTTHTG 348

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT      G     +    G K +   + Y K  +  
Sbjct: 349 RHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDK 389


>gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 382

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/382 (10%), Positives = 101/382 (26%), Gaps = 49/382 (12%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE--YIN 62
            R    + K +    +  Y +        R    + + ++                 + +
Sbjct: 2   PRRGENIYKRKDGRWEARYIYAFKEDGSPRYRSIYAADYLTVKKKQNDAKRKMDPCLFQS 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRS 121
              KK  +   L+  + +     S   ++ + +   F   I    GD      + K    
Sbjct: 62  VRMKKNISFYGLL--WLERLKPSS-KESTYVRYHYLFSHYISPMIGDRLVYTFSNKDCEV 118

Query: 122 GVESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +     +         P +     + ++++ K A ++  +++           +     
Sbjct: 119 FLNRLLVSGKSDGSGLAPKTVTDIRSVVKLILKTAEKEGELSLCNPELCSVKSVRKPLRI 178

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              KE            +   +     LY+G+R  + C    + +      ++  KT   
Sbjct: 179 LSLKEQQDLQDYLLGNLTHKNIGTLIALYTGVRLGELCAMQWKDIHFQEQYLEISKTLHR 238

Query: 233 -------------------------ITVELPDGFMKLLAMTPIGKETFFINND-----KQ 262
                                      + +PD   ++L       +              
Sbjct: 239 VKDHTDDSEHNTKIIITPPKTESSIRNIPIPDFLFEILQQYIQSHKIDPEAYILTGKKMS 298

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                    +FK    K  +     H +R   AT   + G     L    G   ++    
Sbjct: 299 FREPRSIEYYFKKTLKKCQIEPLHFHCLRHTFATRCVELGFDMKTLSEILGHSNINTTLN 358

Query: 321 TYTKGADRIRLGIKNSRRISSV 342
            Y   +   +   +N  ++++V
Sbjct: 359 RYVHPSMEQK--QQNMDKLNAV 378


>gi|256843484|ref|ZP_05548972.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614904|gb|EEU20105.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 361

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/346 (9%), Positives = 92/346 (26%), Gaps = 35/346 (10%)

Query: 16  TRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R         +Y  +G  R          +    +           +  N    +  T 
Sbjct: 6   KRGATWRAQVSWYDDQGKRRFKTKQGFLTKSAARKW----ANEMEVAKDDNRISDQNPTF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                EY  +      A  ++  +      +    G+    K+  +  +S + +    H 
Sbjct: 62  AQAYEEYTNTYKIPGKATTTQRRYNYSITIVKNYFGNVKLTKMNRQRYQSFLNNYGKNHA 121

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------K 183
            ++       ++      +  + +  N    V      +   +       +        +
Sbjct: 122 KTTVRLLNRYIKAFVHDCLSDKLITNNFTDRVNLTWNDSHSHKVQYLNYKEVQKLLKSLE 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    R      +Y+G+R  +        +      I+  K+ + +  ++ +   +
Sbjct: 182 FNIEPTYISRYMIITAIYTGMRIGEIMALKWSDIDFKKHLIRVTKSYSYVDGKIKEPKTE 241

Query: 244 ---------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285
                          L  +    ++  F+    + + AT  +   K +  K  +   +  
Sbjct: 242 SSKRVIRVSENLLDLLKQLKANHQKFVFMTQHGKIITATAANQTLKKQLKKLKISKNHFH 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            H +R     +    G   + +    G  ++      Y    D +R
Sbjct: 302 FHSLRHTHVALLLFKGVPLYAISKRLGHSSMSMTASVYAYMLDELR 347


>gi|116512937|ref|YP_811844.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108591|gb|ABJ73731.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 116/396 (29%), Gaps = 65/396 (16%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R      S  +       A+         I
Sbjct: 2   NIKEYIKKDGTKVYRTNVYLGVDNLTGKQVRTSVSANSRKMCDIKARQAINKFINNGSTI 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTKH 118
              +      + L   + +S     +  NS     ++    + I+   G +   KIT   
Sbjct: 62  AREKVVFDNFESLALSWFESYKLT-VKENSISVADNYLR--NYILPPIGSYKLSKITPML 118

Query: 119 IRSGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++  V    +  ++A                  L  ++ +  + ++   +  N  + V  
Sbjct: 119 LQELVNKWANNANTAEIINGKRERGKCKDYKLLLNFIKRILDYGMQLGAIEDNSAIKVFP 178

Query: 164 PKRKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           PK KT  ++     D                 ++  + +  ++ LL +GLR  ++     
Sbjct: 179 PKLKTRTVKKIKYFDNEELKQFLLYLDTLEPSTDNRKSKTLYKLLLATGLRVGEAMALSW 238

Query: 215 QHLQNNIFS---------------IKTQKTGTIITVELPDGFMKLLAMTPIG-------- 251
             +  N                     +   +  +V L +  ++ L              
Sbjct: 239 SDIDFNNHYLSVSKTLIQQSNLIQDSAKTKESNRSVFLDNDTLESLKEWRKYQNDGAISL 298

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
            ++   +  ++  +              AGV     HG R   A++  +      E+   
Sbjct: 299 HDSLVFSYHQKMRSYEIERQKLVRHFKNAGVPNIGFHGFRHTHASLLMNNDVNPKEIQRR 358

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
            G         TY+  A       + + + SS++ +
Sbjct: 359 LGHADYAITMNTYSHLAKSKE--KETAEKFSSILKA 392


>gi|77165703|ref|YP_344228.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254434304|ref|ZP_05047812.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76884017|gb|ABA58698.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207090637|gb|EDZ67908.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 406

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 85/325 (26%), Gaps = 25/325 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKR------EYINSPRKKPTTLKWLISEYRKS 81
           G  +RI L      T + A   A                    + +  TL   +  Y  S
Sbjct: 56  GREKRITLGKYGHLTLMQARKEAARLLGEIAVGRNPLAEKAQAKLRAVTLGEALEHYLTS 115

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSM 140
                L   +         +            IT   + +  +       S A   +  +
Sbjct: 116 ---RPLKARTIQGTRHTMGKCFSDWMKRPLTSITRDKVAARHKQLGTASKSHANLAMRYL 172

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------------TKEDMQQFKSFWSE 188
           R +F +A+          +  + P  +    R W             +           E
Sbjct: 173 RAVFNFAMADYTDNEGRPVIADNPVNRLSEARTWFRVERRRTVIKSHELKPWMQAVQRLE 232

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               R  F  +L +GLR +++     Q++                        ++  +  
Sbjct: 233 NGAARDYFMLVLLTGLRRTEALNLRWQNVDLVANTLTVQDTKNHQAHTLPLSDYLTEMLA 292

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             +            +   +          + AG++ S H +R+  AT++       + +
Sbjct: 293 ARLEDTYSEYVFSTSRGRLSNLRGPLAEVRSYAGISFSIHDLRRTFATVADSLDVPGYAV 352

Query: 308 MATYGWKTVD-QAETYTKGADRIRL 331
            A    K  +     Y    D  RL
Sbjct: 353 KALLNHKAANDVTAGYI-VVDTERL 376


>gi|70727103|ref|YP_254017.1| integrase [Staphylococcus haemolyticus JCSC1435]
 gi|68447827|dbj|BAE05411.1| integrase [Staphylococcus haemolyticus JCSC1435]
          Length = 362

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 103/353 (29%), Gaps = 33/353 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-RE 59
           M  +L L   + K+  R     YYFR  +  R       + +       A+        E
Sbjct: 1   MNHNLNLSHNIHKDGKRG---TYYFRITYYDRTNKRKEIKRSGFKQRKEAVKKCNEIMNE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                         L +EY         + +S  S +++ +  +I      D  ++TT+ 
Sbjct: 58  LEGIGHINKLPFNELANEYLDWYSARRKS-SSVKSLKTHLNNHLIPYFKSIDVFEMTTQD 116

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           I      +    H+     +    +  L   A++   +  N    V   + ++     + 
Sbjct: 117 IMKFQNRKLKENHSGEYLKKMHIFIVSLLNHAMKYHGLQNNVASLVGNFEVESNKRFNYW 176

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
             D            + ++ F+ L YSG R  +      + +      I   KT      
Sbjct: 177 TLDQFNQFYEVLPTLEQKVFFKLLFYSGARKGEVRALTWEDINFKEEYIHINKTDYHGEV 236

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFKA 275
                      + LP   M  L       +   +            +  + ++   WF  
Sbjct: 237 TSPKTKAGIRDIYLPTHMMNDLKNYHSWYKEHNMYKDSYVLFGTFFKAFSESKIDRWFTN 296

Query: 276 KATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
                         H +R   A++  + GA+   +    G  ++++    Y  
Sbjct: 297 AYKLLPTDFPKIVIHEIRHSHASLLINHGASLMVIAQRLGHSSIEEVSTRYGH 349


>gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 311

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 36/302 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
            + L+ EY      G+ +  +  ++  + D+ I         ++    I         + 
Sbjct: 3   FEKLVKEYLLELKLGNYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKIHYKLFISQ 62

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   +     L S +  + + +R++ +  +P  S++  K   + +  +  ++++  
Sbjct: 63  LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122

Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + W+  +    + +     L  +G+R S+        L +        K      V + 
Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIR-VLGKGDKWRVVPIS 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFK----------A 275
           +    LL      ++  F     +                                    
Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMIAQTGLQ 241

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
              +A V  S H  R +    S + G     +    G   +   + Y +     +L  K 
Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301

Query: 336 SR 337
            +
Sbjct: 302 VK 303


>gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 291

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 74/271 (27%), Gaps = 25/271 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           L            L+  ++ S+     +                +    +   +     +
Sbjct: 11  LRQRMIDDMRMRKLSPKTQASYIRVVKRFAGFLRRSPDTASVEDLRRYQL--HLVDHGIS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    LT ++ LF+  + +  +          P      +      +         + 
Sbjct: 69  PISLNATLTGLKFLFETTLDRPELLTKM-----HPVHVPHKLPVVLSREEVARLIAAVDN 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + + A      +GLR S+     V  + +   +++ ++          L    ++ L  
Sbjct: 124 LKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRA 183

Query: 248 TPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                +    ++  Q +    A A  A ++K    H +R   AT
Sbjct: 184 WWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +       +    G K ++    Y + A
Sbjct: 244 HLLEQKVDIRVIQVLLGHKKLETTALYAQVA 274


>gi|297539373|ref|YP_003675142.1| integrase family protein [Methylotenera sp. 301]
 gi|297258720|gb|ADI30565.1| integrase family protein [Methylotenera sp. 301]
          Length = 339

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 102/337 (30%), Gaps = 24/337 (7%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F     R       ++      Y + L  S  ++E +    K        +  Y  
Sbjct: 12  WWVRFTHKGKRVQESTGTNDRQKAQEYEAKLVNSLWEQERL--GIKPKRQWNDAVVRYVD 69

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137
                     S++S   +   + +     + + I    +   +++++      S+  + L
Sbjct: 70  ETQHK----ASQVSDLYHLRWLDKYLNGVELQVINRDFLEKILKAKQAEGVANSTVNRVL 125

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +R L + A  +    I+   +V       + +R  T+ +  +                
Sbjct: 126 EVVRGLLRKACNEWE-WIDRVPAVRMLPEPKKRVRWITRNEADRLVEALPSHLAD--IVR 182

Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F L +GLR S+        +     +  I   +      + +P   + +L +     +  
Sbjct: 183 FSLETGLRRSNVTGLQWSQVDLVRRMAWIHPDQAKARKAIPVPLSTVAVLTLRKQIGKHQ 242

Query: 256 FINNDKQKMNATQFS-IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
                 +    TQ +   ++    + G+     H +R   A+     G   H L    GW
Sbjct: 243 THVFTYKGNTITQVNTKTWRKVLKEVGIESFRWHDLRHTWASWHIQEGTPQHILQELGGW 302

Query: 314 KTVDQAETYTKG--------ADRIRLGIKNSRRISSV 342
            + +  + Y            DR    ++N   +  +
Sbjct: 303 SSPEMVQKYAHLSSAHLMEWVDRKIAVVQNVAEVVRL 339


>gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820]
 gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820]
          Length = 637

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 89/332 (26%), Gaps = 40/332 (12%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS--AHWGSLAVNSRI- 93
           Y     +          S P+ +   +  +     K   ++Y K     +  L +N+R  
Sbjct: 179 YFDGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSF 238

Query: 94  ----SFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMR 141
                  S   +          G     ++T   +   +     +   PS+A   ++++ 
Sbjct: 239 SHVVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLE 298

Query: 142 VLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           V F    R ++            + PK      R   +  ++Q      +      A   
Sbjct: 299 VFFSTLQRFDWKDSPSQILIFREDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVM 358

Query: 199 LLY-SGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG- 251
           +L   G+R  + C      +      +        K     T+ +      L+ +     
Sbjct: 359 VLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQRV 418

Query: 252 -------KETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATI 296
                      F   D   +    F +     A +  +           AH  R    T 
Sbjct: 419 ADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTR 478

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G   H +    G ++ +    Y    D 
Sbjct: 479 MINNGVPQHIVQKFLGHESPEMTARYAHIFDE 510


>gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 355

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 31/290 (10%)

Query: 68  PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119
           PTTL  L +   +S       S A  +  +       +     D + + I  + I     
Sbjct: 18  PTTLLELSNTELQSVKEGVGKSKAEGTYTNLFYANRMLCEFIKDLESKDIEIRSITEELF 77

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              R  ++ +    S+   +L  +  L  +    + +           ++  + IR  +K
Sbjct: 78  EKYRFFLKKKGLKGSTINNYLCWLSRLM-FRAVSQRIIRYNPFEHAEYEKVEKAIRFLSK 136

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            D++   +     S     R  F F  ++GL  +D       ++++        +     
Sbjct: 137 SDVKNLMAMKMCDSDAELARRMFIFSCFTGLAITDMEHLTFGYIKSAADGQMYIRKERQK 196

Query: 234 TVELP--------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T                     +K +       +       +   + +  +         
Sbjct: 197 TKMEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKA 256

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            G+ +    H  R    T+   AG     +    G  ++   + Y +  D
Sbjct: 257 CGIKQRLSYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTD 306


>gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 376

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 30  RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERNTMEETEAKPWLGESVD-RRTL 87

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 88  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 144

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 145 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 204

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 205 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 264

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 265 ISKELYEEIMALDGFNFFTDYYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 316

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 317 FMMSGGNILALQKILGHHDIKMTMRYAHLA 346


>gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 390

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 109/382 (28%), Gaps = 45/382 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            L+ P  +  +    G    Y   + KG  +   L         P        +    E 
Sbjct: 9   KLKEPIKIRLKPLADGNKSIYLDIYWKGVRKYEYLKLYIIPEVNPLCKEQNKETMALAER 68

Query: 61  INSPRKKPT---------TLKW---LISEYRKSAHWGSLA--VNSRISFESYFDQIIRKS 106
           I + R K           T+K    L++ + K    G ++   ++          + +  
Sbjct: 69  IKAERIKALHGHGVQDWETVKQGSQLLTGWIKKYCEGGVSTKKSTLHCRVEMLHTVEKYL 128

Query: 107 GD-----FDYRKITTKHIR--------------SGVESRKHTPSSAIQFLTSMRVLFKWA 147
            +         ++     R                +E R  + ++A ++L         A
Sbjct: 129 EESNQTFITLEEVNADFCRGYVKFLRTFPNSHCKYIEPRPISQNTASRYLGMFSTTLNNA 188

Query: 148 VRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           VRQ  +  NP       ER + K       T E+++   +  S   + + AF F  ++GL
Sbjct: 189 VRQGIIRNNPMKELDAKERIQPKDGKKEYLTIEELKALMATDSYRPEVKQAFIFACFTGL 248

Query: 205 RCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           R SD  +    H+                     +     +         +         
Sbjct: 249 RLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEKPVIIPLSEEAKRWLPKPKGITTPFFDI 308

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               T      +  A  AGV K  S H  R    T+    GA         G   +   E
Sbjct: 309 PTTQTVIGRALRKWAEAAGVEKHISFHCSRHTFGTMMLTLGADLFTTSKLMGHTNIQTTE 368

Query: 321 TYTKGADRIRLGIKNSRRISSV 342
            Y K  D+ +   +    I  +
Sbjct: 369 IYAKIVDKKK--EEAINLIDGM 388


>gi|257790681|ref|YP_003181287.1| integrase family protein [Eggerthella lenta DSM 2243]
 gi|257474578|gb|ACV54898.1| integrase family protein [Eggerthella lenta DSM 2243]
          Length = 438

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/386 (10%), Positives = 100/386 (25%), Gaps = 56/386 (14%)

Query: 17  RHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINS 63
           R G     +R       KG  +   +             +             +R     
Sbjct: 11  RGGSWRMSYRAVYDAERKGDRKWATIGAAASRAEAEHLAAEYLYNLPRDPEDERRAEAIE 70

Query: 64  PRKKPT-TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
             +    T+  L  +    A   G++  ++   +  +  +++   G+    ++T + ++ 
Sbjct: 71  ATEGRMPTVGELRRDDIDHALAVGAIEKSTHAGYCRHV-RLLGDLGEIPVDRVTAQDVQL 129

Query: 122 GVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V+S         +    L ++R   + A  +          +  PK      R  + E+
Sbjct: 130 YVDSLVEDGYCSETVNHMLWTVRDTLELASFRMLRPPLDLRRIRAPKHDRPLPRALSAEE 189

Query: 179 MQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
                +                L++GLRC + C     ++  N  +++            
Sbjct: 190 KNALLAALPCIRGPLDAIVRLALFAGLRCGEICALRWANVDLNRRTVRITSAIGTLPSSN 249

Query: 232 -------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                           +   +   +          + D   M  
Sbjct: 250 GYLKGPKSPAGVRALPIADGLMEGLERRRAEQEARCRDAGVPFTDDIFVVGDIDGAFMVP 309

Query: 267 TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
              +  F+      G+       H +R   AT    +G     +    G          Y
Sbjct: 310 RYANQLFRTFVRTFGIGGGKCGLHRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLRIY 369

Query: 323 TKGA-DRIRLGIKNSRRISSVVDSDD 347
              + + +R  +     + ++ +  D
Sbjct: 370 VSSSPENLRASVDAVNEVMALPEGYD 395


>gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1]
 gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1]
          Length = 337

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 94/331 (28%), Gaps = 39/331 (11%)

Query: 18  HGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           +GK           G+RIR           ++   +      + ++   +    T+  L+
Sbjct: 8   NGKWQAQVFPNGREGKRIR-RQFATKGEALSFEKHIKDQAQDKPWLG-EKTDKRTVFDLV 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------- 126
           + +  +     L    +   +   +   +  G+    +   +      E R         
Sbjct: 66  NTWYGAHGIT-LTDGQKR--KDAMEFACKAMGNPLASEFNARIFSVYREQRLSGKITRSS 122

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                TP +    L   R +F    R  E+ A NP  ++   K     +   T E+++  
Sbjct: 123 RVKTVTPRTVNLELAYFRAVFNELRRLDEWQAPNPLDNIREYKIAESEMAYLTDEEIRSL 182

Query: 183 KSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                  +   L       L +G R  ++       ++         K      + + D 
Sbjct: 183 LRECEASTSKDLLTVVKLCLATGARWGEAETLKGNQIRAGKVIFTKTKGKKNRAIPISDA 242

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSAT 295
            +  L  +   K  F           +     F++   +A +  +      H +R   A+
Sbjct: 243 LIAELPASRKAKPLF-----------SSCYAAFRSALKRAEIE-TPAGQLTHVLRHTFAS 290

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G   +     Y+  A
Sbjct: 291 HFMMNGGNILVLQRILGHTDIKVTMRYSHFA 321


>gi|218442682|ref|YP_002381002.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175040|gb|ACK73772.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           7424]
          Length = 319

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 84/296 (28%), Gaps = 30/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
           + E+       SL+ NS+ ++     + I    +    +IT + I    E  +      S
Sbjct: 32  VEEFL---RARSLSSNSQKAYRRELKRFIN-WSNKPLNQITPRQIVQYKEYLQGESLAAS 87

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S  + L +++  F W                 + P      +     E +Q       E 
Sbjct: 88  SINRALCAVKSFFAWLEETYQTQNPTVSVALNKLPSLPAFDLSDKEIEALQLVLPQRPEV 147

Query: 190 SQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            + R  A   +L  GLR  +     +         ++  K  +  TV L       +   
Sbjct: 148 MRKRDAAIIAVLRHGLRACEVVALNLGDYDGVRVHVRVGKDDSGGTVPLDATARAAINAY 207

Query: 249 ---------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
                          P+      +     ++         K   + AG+   + H +R  
Sbjct: 208 LQQRREKGEKFSATAPMFASHSPVPGKPTRLGYQGLYYLIKELGSNAGIENLTPHRLRHT 267

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT     G  +         K+    + Y K A    L     R     +  + P
Sbjct: 268 FATNLLLKGMDSLHARTLTRHKSEVSFKRYAKRA----LSAAAERAFYEAIGEEPP 319


>gi|326406231|gb|ADZ63302.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 379

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 104/357 (29%), Gaps = 49/357 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-------- 69
            GK  Y+ +    +R +      +    + ++           I   +K PT        
Sbjct: 8   SGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANEIQEQI 67

Query: 70  ----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T++ +  E+        +   S ++ +      I K   +   ++TT  I+S +  
Sbjct: 68  VQNKTVQEIYEEWVVIRK-QDVKPASFVAEQISLKGFIEKFSKYKVSEVTTADIQSYLME 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED 178
                S+       +R+LFK+A    Y+  NP   V  PK +           +  +KE+
Sbjct: 127 LDIANSTRKNRRIYIRILFKYAENIGYIDSNPADKVVLPKVRLEIETLERANEKFLSKEE 186

Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           M     F     +  +  LA EF+  +G R  +      Q +      ++   T      
Sbjct: 187 MSSVLIFCKSYKKNIRYTLAMEFIFLTGCRFGEFASIRYQDVDFKNKLLRIDHTLEYRVA 246

Query: 236 EL----------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +                           +       +  +  F+N          F  + 
Sbjct: 247 KYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFI 306

Query: 274 KAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                K          H +R    ++  + G     +M   G +        Y+  +
Sbjct: 307 CDNCQKVLGNERKYGIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|300715658|ref|YP_003740461.1| Phage integrase [Erwinia billingiae Eb661]
 gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661]
          Length = 346

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 76/331 (22%), Gaps = 39/331 (11%)

Query: 18  HGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            GK +   Y     GRR+R           A+       T  + ++   +     L  LI
Sbjct: 8   SGKWLCECYPAGRSGRRVR-KQFSTKGEAVAFEKHTMSETDAKPWLG-EKDDTRLLSELI 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
             + +          ++       ++     GD     +T   I      R         
Sbjct: 66  QLWWELHGVTLADGKNKKLRFQNLNRTCEALGDPIAADLTPFDISEYRRKRISGEVFSKK 125

Query: 131 ----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+     T +  ++    +  ++     +    P R  E    +      
Sbjct: 126 RNRFRLPAALSTINIECTYLTSVYNTLKKLGHIKYPNPIENVPPFRIKEKELSFLNIAEV 185

Query: 181 QFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                     + +      +  L +G R  ++       +     +    K+G   +V +
Sbjct: 186 NALLKACEAYDNADLTTIVKICLSTGCRWGEALNLRGSQVIPYKINFAYTKSGKNRSVPI 245

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFS 293
                  +                        +  F      A +        H +R   
Sbjct: 246 TKELFDEINKKQGALF-------------KDVTKRFNTVLKMANIELPHGQKTHVLRHTF 292

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+           L    G   +     Y  
Sbjct: 293 ASHFMMNSGNILVLRQILGHTDIKMTMIYAH 323


>gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5]
 gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5]
          Length = 353

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 41/324 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGD-----FDYRKITTK 117
           K   T+  LI E+  +      + ++  ++      +      +GD          ++ K
Sbjct: 28  KPDETVGALIEEFLTARATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPK 87

Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R+           +S  +  ++    F + V +  V  NP  +V RP+      +P  
Sbjct: 88  VMRAAFARFAGPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLR 147

Query: 176 KEDMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ED  +                   +        L +GLR S+     V  +       +
Sbjct: 148 GEDTPEELLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERR 207

Query: 226 TQKTGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFS 270
               G      TV + DG  ++LA     +   F +   +  +                 
Sbjct: 208 VDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDSPFLVDRQGEALRRGGLQ 267

Query: 271 IWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++   +AG+          H +R   AT  A+ GA+A E+M   G  ++  ++TY +
Sbjct: 268 YLVESCYRRAGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIE 327

Query: 325 GADRIRLGIKNSRRISSVVDSDDP 348
                +     + R +  +    P
Sbjct: 328 VTAGQQRAAVAANRTNRALSGLAP 351


>gi|206602548|gb|EDZ39029.1| Putative integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 388

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 100/351 (28%), Gaps = 26/351 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R        R      +             +         +  Y +    + TTL   +
Sbjct: 38  KRGNTWQAIVRIKGHETV-AHTFDTKAQAEEWHEETRFEIRRGRYFSRKEVENTTLAEAL 96

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +       +             +           I    I +  + R    +P++ 
Sbjct: 97  DRYEREILPSKKSQRPVRVVIRQ--WLAHPLAKRALVSIRGSDIAAWRDDRLKTVSPNTV 154

Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              L  +  LF  A+++  +   +NP   + +PK      R     ++ +          
Sbjct: 155 RLDLALLSHLFTIAIKEWGMTGLVNPVQQIRKPKLPKGRDRRLNPGELDRIVEASCSPLL 214

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTP 249
           P +   F L + +R  +      + +     +      K G    V L    +++L+  P
Sbjct: 215 PEII-RFALETAMRRGEITGMTWKLVDLKKRTATLLDTKNGEKRIVPLSLEAVRILSGIP 273

Query: 250 IGKETFFINNDKQKMNA------TQFSIWFKAKATKAG--------VNKSAHGVRKFSAT 295
              +      + Q +        ++    +K +  +          V+ + H +R  + +
Sbjct: 274 RRIDGQVWGLEDQSVTRAFERAVSRARAVYKKECEEKKGNPDPSFLVDITFHDLRHEATS 333

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
              + G  A ++    G KT      YT       + I+   R+      D
Sbjct: 334 RFFELGFDATKVKEITGHKTYSMLSRYTH-LKAEDIAIE-MDRLEKRKAED 382


>gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
 gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105]
          Length = 298

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 94/297 (31%), Gaps = 36/297 (12%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129
           LI  Y          + +S  + +     I     D    ++TT   K I +   +    
Sbjct: 13  LIQRYLDFLRLERRYSDHSVKAAQRDLSLI-----DTPPGQVTTTALKSILAQRHAAGAA 67

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSF 185
           P+S  +  +S R  FK+ +    V ++P L ++ PK      +    + +     +    
Sbjct: 68  PASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRSLPKAVGVDPLAALLAKPLPQ 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               +Q  +  E L  +GLR S++     + L  +       K      V + D     L
Sbjct: 128 EFRFAQAHVLIELLYCTGLRISEALTLQAEALNGSTELRVVGKGNKARIVPVVDALQARL 187

Query: 246 AMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
                 ++              F++     + A Q        A K G+  +   H +R 
Sbjct: 188 REFVEPRQIHLLKLGKGQGASLFVSAKGLALTARQAQRDIADHAAKCGLGQHLHPHMLRH 247

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              +           +    G  ++   + YT         +     +SSV D+  P
Sbjct: 248 SFGSHLLQGTQNLRAVQELLGHASIASTQVYT--------ALD-FDHLSSVYDNAFP 295


>gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134]
 gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134]
          Length = 417

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 109/311 (35%), Gaps = 29/311 (9%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQI 102
            +   L  +   + +     ++  +L+ LI  Y       +LA  +  +F   E+Y ++ 
Sbjct: 85  KFQEKLITAKLIKAHYTGENEQSKSLQNLI-AYHSKKIENTLAKGTIRNFGVTENYLNKF 143

Query: 103 IRKSG---DFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVR 149
           + K     D   +++  K +        +          + ++ ++ +  +R +   A  
Sbjct: 144 LNKVKKTTDIYLKELDYKFLCDFENYLANYWPVGHPKALSQNTIMKHIQRLRKMVTLAYH 203

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            E++  +P +  + P  + +     ++    +M+ F+       + R  F F  Y+G+  
Sbjct: 204 MEWIPRDPFVRWK-PVYEKKQREFLSENELLNMETFEFSIERLERVRDLFVFSCYTGISY 262

Query: 207 SDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
            D      ++L       N    K QKT + + V L     ++++       T       
Sbjct: 263 VDIMNLTEENLVLGMDGGNWIYTKRQKTKSAVKVPLLGKAEEIISKYERHPMTEITGTLL 322

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQ 318
             +   + +++ K  A   G+ K  + H  R   AT      G     +    G   +  
Sbjct: 323 PVITNEKLNVYLKEVAHFVGIKKNLTFHMARHTFATTITLSNGVPIETVSKLLGHSKIAT 382

Query: 319 AETYTKGADRI 329
            + Y +  +  
Sbjct: 383 TQIYARVLEHK 393


>gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 317

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 40/288 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHI-- 119
           I EY +     +L+  +  S+E+  ++                         I ++HI  
Sbjct: 7   IKEYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------- 169
             R   + R ++ ++    LT+++V F +  ++  +      ++     + +        
Sbjct: 67  YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNVETLTE 126

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             IR   +   ++ +       +      FLL +G R  +      + +      +    
Sbjct: 127 EQIRLILRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLRWEDIDLKAGQVVFPD 186

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKA 277
           TG   T +      KL++     K+    +                M+     + F   A
Sbjct: 187 TGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVFVRLA 246

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +        SAH +R F  +    AG +   +        ++    Y
Sbjct: 247 QELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKY 294


>gi|254497048|ref|ZP_05109875.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353740|gb|EET12448.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 413

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 103/353 (29%), Gaps = 31/353 (8%)

Query: 21  IIYYFRK-GHGRRIRLPYPHESTFIPA-------YMSALTGSTPKREYINSPRKK-PTTL 71
             Y ++  G  + + L +        A       +     G  P+      P  +  TT+
Sbjct: 41  WFYRYKHNGKEKWLTLGHFPAMGVAEARNLFNELWNKRQNGENPEEYLKQEPESQIDTTV 100

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + L++E+  S +      + +   +  +  II   GD    K+ TK I   ++    + +
Sbjct: 101 EQLVTEWY-SGYIEKHRAHPQQIKQIIYADIIPLLGDKKLAKLKTKEITLALDKIVNRGS 159

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKE-----DMQQ 181
           P  A + L +++  F +   +  +  NP  ++        +    R  T E         
Sbjct: 160 PIHANKVLAALKQAFNYGESRGDMLSNPAANIRARDIGGLEKARERYLTLEEIKELWHFL 219

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TIIT 234
                    Q + + + +L +G+R  +   A       +                  +  
Sbjct: 220 DSDKNHISVQIKNSLKIILLTGVRGGELRVAKWSEFDFDKSLWTIPAVNTKTGTILRVHL 279

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
                  +  L      +      N    ++             +  +   + H +R+  
Sbjct: 280 TPFMKSLLLELKKNNSSEYVISGLNGLSCLSDKAIPKAVNRIQERLNIPQWTPHDLRRTF 339

Query: 294 ATISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVV 343
           AT   +        +    G K      TY K     + +  ++        +
Sbjct: 340 ATQLGETLNIDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWADFVDKL 392


>gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238]
 gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238]
          Length = 202

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 16/168 (9%)

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTI 232
                 +     +   + R+        G+R  +  R  V  + ++   I+  ++     
Sbjct: 8   PCMFTIKRILAMAPSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKD 67

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKA 280
             V LP   + LL      + T    +                 +A Q S  FK  A +A
Sbjct: 68  RIVMLPVDILSLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREA 127

Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G+    + H +R   AT   + G     + A  G   +     Y   A
Sbjct: 128 GITKPVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVA 175


>gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 213

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 9/212 (4%)

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+A   L  ++ + + A   + +  N    ++  K  +      T +++++        
Sbjct: 3   ASTANNNLNKLKCVLRLAYEDKRIKENIAPRLKHAKEASTRREFLTLDEVKKLAHTPCGK 62

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
              + A  F   +GLR SD  R   +++             T    T  +     + LA+
Sbjct: 63  PVVKSAALFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEALAL 122

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                                  ++ K     AG+ K  + H  R   AT+   AG   +
Sbjct: 123 CGERSTGQVFKGM----TQALLPLYLKDWIKSAGITKHITFHCFRHTYATLQLAAGTDLY 178

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            +        V   + Y     D  R   +  
Sbjct: 179 TISKMLTHSNVATTQVYADVVNDLKRKASEQI 210


>gi|239931195|ref|ZP_04688148.1| putative integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 420

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 91/388 (23%), Gaps = 61/388 (15%)

Query: 14  ERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  RHG   +    +    G      +P +   +         +   R     PR    T
Sbjct: 24  KTERHGLGLRYRARYIGPDGTEKSKSFPDKQKRLADAWLTNIEADMARGQYIDPRAARIT 83

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     +  +      +  +           +   G         +HIR      +   
Sbjct: 84  FREYTDRWLAALTTDLTSRAAVEGRLRL--HALPYLGTRPIGSFQPEHIRDWNRQLEDAV 141

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +SA        ++  +   AV    +A NPC        +    R       Q F     
Sbjct: 142 ASAQYRRLIFDAVSSVLNAAVDDRLLASNPCRVRSVKAPRPAPSRVHPWSAEQVFDVRAG 201

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---- 243
              + R   +     GLR  +     V ++ +  +    Q+   +    +     +    
Sbjct: 202 LPERYRAMVDLGAGCGLRQGEIFGLAVDNIGDLGWLYVRQQVKKVRGTLVFAPPKRGKLR 261

Query: 244 ----------LLAMTPIGKETFFINNDKQKMNATQFSIW--------------------F 273
                      L           +          + +                      +
Sbjct: 262 DVPLDLEVSAALREHMAAFPPVDVTLPWLTPTGPKVTHRLLFTSGSGAAIWSQAFNDRAW 321

Query: 274 KAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
           K     AG+                  H +R F A++  DAG +   L    G       
Sbjct: 322 KPALASAGIIPAPGKGERYAAAREHGMHALRHFYASVLLDAGESIKALSLYLGHSDPGFT 381

Query: 319 AETYTK----GADRIRLGIKNSRRISSV 342
              YT        R R  I    R +  
Sbjct: 382 LRVYTHLMPSSETRTRKAISAMYRAAGH 409


>gi|239908837|ref|YP_002955579.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
 gi|239798704|dbj|BAH77693.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
          Length = 384

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 104/354 (29%), Gaps = 35/354 (9%)

Query: 16  TRHGKIIYYFRKG-HGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPT---- 69
            R GK  +  +    G+ + + +    +     Y  A+      R+ + +  +       
Sbjct: 6   KRRGKDRWRAQVRMDGKSVAIKWFGSGAKGGKEYRQAVAWEEETRKALEAMPEPEIPTVS 65

Query: 70  -TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK 127
            T++   + Y         A ++     + F  + R  G DF+   +T       ++ + 
Sbjct: 66  LTIRDWANAYLDEVQ-RRRAKSTYSEARTAFKYLGRTLGPDFEMSSLTPTEALKHLDIQN 124

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKS 184
              + S+A +   ++   + WA +             +  R     +P +   ++  +K 
Sbjct: 125 DTRSGSAANKDRKNLSRGWNWAKKFLPNFPQTPNPFLQVDRYPITRKPRYVPPEVDYWKV 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------QNNIFSIKT 226
             +   Q  +      + G R  +  R     +                    + +   T
Sbjct: 185 MATLEGQDEVMLTAFFHLGARRGEIFRLKWADVDFGGERVRLATRKTADGSYKHDWIPMT 244

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
           Q+    +     +   K           +   N  +         +      +AGV    
Sbjct: 245 QELKARLMWWWENRRHKQSEYVFTVTGDYRFENQWEGEPFRYRQHFMDKLCERAGVKPFG 304

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA----DRIRLGIKN 335
            H +R  SA +   AG     + A          E Y K      D+++  +K 
Sbjct: 305 FHAIRHLSAVVLYQAGYPVAMIQAILRHDNATTTEKYLKRLGLDPDKLKTAVKA 358


>gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 358

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 105/327 (32%), Gaps = 20/327 (6%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
               F+    R+ R     E+    A   A       + +    ++ P TL+ L+ ++  
Sbjct: 12  WHCRFQINGTRQQR--STRETDRQRAEQVAEAAVRQAKLWTRDSKELP-TLRELVRQWLV 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138
                +   +     E++    +    D    +++T  +          H P SA Q+L 
Sbjct: 69  VHESTASRAH-VKVVETFGRLHLYDLADVLIDELSTDRVEFARVRHLESHAPVSANQWLK 127

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---- 194
            +R+L  WAVR+  +A  P   V   K + +          + +      G   R     
Sbjct: 128 VLRLLCNWAVRRGILAAVPFR-VRALKVQKKPRAILPVAMARAWLDAIDAGEGNRAGVRT 186

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPIGK 252
           A   +L  GLR S++  A  + L     +    +T       + +P   +  L       
Sbjct: 187 AVRLMLGLGLRESETITARWEWLDVGRQTYTPGRTKGREADPIPVPAWLIDYLMADWKAA 246

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311
                  +     A        A     G    +AH +R   AT+ ++AG     +    
Sbjct: 247 GPILQKANGCPYPAGFTRSAMLAANRAVGAPHITAHRLRGTFATLLSEAGVPVQSIQRAL 306

Query: 312 GWKTVDQAETY------TKGADRIRLG 332
             K +     Y      T  A + R+ 
Sbjct: 307 RHKNLTTTAAYLEVDMGTVAAGQQRIA 333


>gi|312794919|ref|YP_004027841.1| phage integrase family protein [Burkholderia rhizoxinica HKI 454]
 gi|312166694|emb|CBW73697.1| Phage integrase family protein [Burkholderia rhizoxinica HKI 454]
          Length = 407

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/334 (10%), Positives = 85/334 (25%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R R     Y      G +             A            + +    +   T   
Sbjct: 36  KRDRSPNWYYKLYPPGGGKPLQGSTGTRDKAKAQEFHDRLKASLWDRVKLGHRPHYTWNE 95

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
            + EY            S  + +++   + +         I  + I +    ++  P   
Sbjct: 96  AVLEYVADREGM----ASIETTKTHLRWLDKHLSGVRLVDIDRERIDAIARIKRQEPRVI 151

Query: 132 ----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           +  + +  +  +   AV + ++   P     +   K        
Sbjct: 152 RTRYGEQATGRTVSEGTVRRVIGVLVAVLNAAVERGWLDRAPVRKPVKLVSKRIRWLTAA 211

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + D    +         + + E  L     +GL+             +   +   +    
Sbjct: 212 EADRLLAELPEHLADMAQFSLETGLRRANVTGLQWPQIDLVRRVAWIHPDQAKARKAITV 271

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++        + L      +    +   +        +  +K    +AG+ +   H +R
Sbjct: 272 PLSDTAVAVLQRQLPKKRKVEHVESVFVYQGAPVRQTATAAWKKALKRAGIRDFRWHDLR 331

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 332 HTWASWHVQRGTPLQVLKELGGWQTLEMVQRYAH 365


>gi|309702155|emb|CBJ01470.1| putative phage integrase [Escherichia coli ETEC H10407]
          Length = 399

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 109/340 (32%), Gaps = 30/340 (8%)

Query: 17  RHGKIIYYFRK---GHGRRIRLPYP------HESTFIPAYMSALTGSTPKREYINSPRKK 67
           R G   +  R    G  + I +                 +  A+      +   ++ R  
Sbjct: 42  RTGNKRFLLRYTFHGTKKSISIGRFPEIDVGTARQIARRHKEAIALGNDPKAERDNYRAM 101

Query: 68  PTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P TL     + Y           +     + +   I  + G   Y  +  + I+  +   
Sbjct: 102 P-TLSEFFHQTYV--PFIKRHKKSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDM 158

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                   ++ PS+  + L  ++ + ++A+RQ+ +  N    +   K   +  R +  ++
Sbjct: 159 LEGRIHGQQYAPSTCNRALAILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADE 218

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +++     ++            LL +G R S+      +H+     ++    T    +  
Sbjct: 219 IRRILDAATQYPNKAAGGLIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRT 278

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNKS---AHGVR 290
           +      L  +  I +          K N          ++    + G++K+    H  R
Sbjct: 279 VYLSDAALSIIDAIPRVGSNPYLFAIKDNGKPISEPRWAYEKILAQCGIDKNEVCFHTTR 338

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
              A++   +G  + +++ A     ++   E Y K     
Sbjct: 339 HSVASLLVSSGQFSLYDVKAQLAHASIQSTERYAKLTPER 378


>gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
 gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130]
          Length = 367

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 93/337 (27%), Gaps = 27/337 (8%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
             Y F+    R              AY + +            P   P T+    S Y  
Sbjct: 12  YSYRFQYRGRRFSGQTDKGNRREAEAYEADIRRQAE---TSVQPIAAPLTVTTAASRYWN 68

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRK---HTPSSAIQ- 135
                 L +        YF  + R  G       IT   +   V +R+    + ++  + 
Sbjct: 69  EHG-KHLKMA--GDLFRYFGWLERHLGKGKRLAAITDSEVAHLVATRRADRVSNATVNRS 125

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +  +R++ K      +    P +  +R +             +++   F +        
Sbjct: 126 VIEPLRMICK-RAELVWKLPAPAIDWKRHRMAEAQEVVREASVVEETALFATIRPDYAPV 184

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKET 254
             F L SG R S+        ++     +K         T+ +     ++L         
Sbjct: 185 LAFALVSGCRLSEIVELTWPQVEWFADQMKITGKGDRTRTIPITAAMGEILKSVHGHDPL 244

Query: 255 FFINND------------KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
                +            +  +  +     ++     +GV     H +R  +AT    + 
Sbjct: 245 HVFTYEAMKTRDGRVKGERYPITKSGLKTTWRRMRAASGVKGLRFHDLRHTAATRLLRST 304

Query: 302 ATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSR 337
                     G   +   + Y     D +R G++ + 
Sbjct: 305 GNLRLAQMLLGHSDISTTQRYAHVQMDDLRAGMERAA 341


>gi|259501397|ref|ZP_05744299.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
 gi|302190882|ref|ZP_07267136.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners
           AB-1]
 gi|259167201|gb|EEW51696.1| phage integrase family integrase/recombinase [Lactobacillus iners
           DSM 13335]
          Length = 329

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 80/276 (28%), Gaps = 14/276 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T +  ++ +  +      +  S   + +  + +  K    + R++ T  I
Sbjct: 40  DTEEETNAGLTNEHFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDI 98

Query: 120 R----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R       + +  +  +       +   F W   + Y+  +P   + + K        +T
Sbjct: 99  RTYLTEYQQEKNSSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYT 158

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E +++ +    E  +     + L  +G+R  +        +                  
Sbjct: 159 DEALEKMRDSC-EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERM 217

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L     G+               +++         +   +K  + K   H
Sbjct: 218 VYFDARTKIHLLTYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGSKLDIEKVHPH 277

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G K +D    Y 
Sbjct: 278 KFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15]
 gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15]
          Length = 313

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 46/291 (15%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR---KHTPSSAIQF 136
               ++  +    + +                  +T K IR  +  +       +     
Sbjct: 6   KARGISQKTIKKHQKFLKLFFEFLKKEQIYFIEDVTPKSIRQFMLMKLEEGCAETYVNSH 65

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------------- 179
           L S+R  FK+ V ++Y+  +    +     K   +   T  DM                 
Sbjct: 66  LRSIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAKKLTFFKP 125

Query: 180 ------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                            +  L    L+ +GLR ++       H+ N    ++  K     
Sbjct: 126 QKMDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLKDFHITNKELFVENGKGKKDR 185

Query: 234 TVELPD-GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK--------AKATKAG--- 281
            V      + + +    +    F  N  +   N    +   K            K G   
Sbjct: 186 IVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQC 245

Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                +  S H  R + A      G   + +    G  ++   E Y +  +
Sbjct: 246 KIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLN 296


>gi|295107261|emb|CBL04804.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 422

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/370 (10%), Positives = 94/370 (25%), Gaps = 49/370 (13%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPT-TLKWLISEY 78
           RKG  +   +             +             +R       +    T+  L  + 
Sbjct: 11  RKGDRKWATIGAAASRAEAEHLAAEYLYNLPRDPEDERRAEAIEATEGRMPTVGELRRDD 70

Query: 79  RKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
              A   G++  ++   +  +  +++   G+    ++T + ++  V+S     + P +  
Sbjct: 71  IDHALAVGAIEKSTHAGYCRHV-RLLGDLGEIPVDRVTAQDVQLYVDSLVEDGYCPETVN 129

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPR 193
             L ++R   + A  +          +  PK      R  + E+     +          
Sbjct: 130 HMLWTVRDTLELASFRMLRTPLDLRRIRAPKHDRPLPRALSAEEKNALLAALPCIRGPLD 189

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--------------------------- 226
                 L++GLRC + C     ++      ++                            
Sbjct: 190 AIIRLALFAGLRCGEICALRWTNVDFERRMVRITNAIGALPSSNGYLKGPKSPAGMRALP 249

Query: 227 -----QKTGTIITVELPDGFMKLLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATK 279
                 +       E                      +        A Q    F      
Sbjct: 250 IADGLMEGLERRRAEQEARCRDAGVPFTDEIFVVGDIDGAFMVPRYANQLFRTFVRTFNI 309

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSR 337
            G     H +R   AT    +G     +    G        + Y   + + +R  +    
Sbjct: 310 GGGKCGLHRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLKIYVSSSPENLRASVDAVN 369

Query: 338 RISSVVDSDD 347
            + ++ +  D
Sbjct: 370 EVMALPEGYD 379


>gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4]
 gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4]
 gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 378

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 21/269 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSS 132
            +       A  + + +E     +           D   + I  + I       K   + 
Sbjct: 95  YRELMNKEYAEGTVLRYERTARYLKEFISEQYKLADIPLKSINYEFITKFEHFIKIQKNC 154

Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A      +L +++ + K A+ ++++  +P   +   K+         + ++++  +   +
Sbjct: 155 AQNATVKYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLNEMELRKIINKDFD 213

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF---- 241
             +    R  F F  ++GL  +D      +HL          +     T  + D      
Sbjct: 214 IQRLQTVRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKAREKTDNMCDIPLLDI 273

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
              +L                   +  + + + K  A   G+ K  S H  R   A+++ 
Sbjct: 274 PRLILEKYQSNPICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHTFASLAI 333

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   +    G   +     Y K  +
Sbjct: 334 ANKVSLESIAKMLGHTDIRTTRIYAKIMN 362


>gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 353

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 111/339 (32%), Gaps = 32/339 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +TK + ++ K  Y F+   G ++                A+   T   E     ++   +
Sbjct: 3   ITKYQKQN-KNFYKFQVRLGEKV-----TTRAGFKTRNEAIFAYTKLLEEYEEEQEGNIS 56

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +    ++ +      +   +  +  S ++  I+   G    ++IT +  +    S K  
Sbjct: 57  YQKAYIQWLEIYQ-TKVKETTYEACTSIYEIHILPVFGQTKIQEITVQDCQKFALSLKD- 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWS 187
                ++    + +  +A++  Y   NP  +V  P+ K     I   T  ++     ++ 
Sbjct: 115 YVKGKEYFGYAKRIIDFAIKMNYTKKNPFNNVILPEFKKGKKQINFLTIVEVNTLLDYYK 174

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230
                   F  + Y+GLR  +        +     ++   KT                  
Sbjct: 175 NNQYWYTLFRLMCYTGLRRGEILALTWDDIDFKNKTLTVNKTLSIGEYKKIVLSSPKTES 234

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVNK-SAH 287
           +I T++L D  +  L    I  +   I  +K+   +     +        +  + K   H
Sbjct: 235 SIRTIDLDDKTILELQKLKIQSKYKLIFPNKKGKYSRLSNIADKLNKAIKETNIKKIRVH 294

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            +R   A++   +GA+   +    G   V      YT  
Sbjct: 295 DLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHV 333


>gi|307608888|emb|CBW98287.1| hypothetical protein LPW_01441 [Legionella pneumophila 130b]
          Length = 397

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 81/284 (28%), Gaps = 28/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T+  L+ E+   A       ++   ++   +  ++      + + +    +R  +   
Sbjct: 93  KITIGELLREFLAEAKSTK-EASTYRGYKRVCEGHLLPMFDKVEIQDLQPAMLRKWIRGL 151

Query: 127 KHTPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           + T  +    LT +R + +       +++  +       +   + K    +P      + 
Sbjct: 152 QCTTKTVANILTPLRAVIEQALVDQYIKENPLNSIIVDKLLNKETKKSDYKPDPFSVDEI 211

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------------- 224
                    Q RL F+F  ++GLR S+      + +      I                 
Sbjct: 212 NAILNESEGQVRLLFQFAFFTGLRVSELIGLRWEDVDWQNQIIHVEETIVYKEAKGPKTE 271

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                       +E  +   +               N   + +       +     +AG+
Sbjct: 272 AGVRDVLLLPPALEALEQQKQYTFSQKGRVFHNPQTNKPWETSQQIRRTQWMHILKRAGI 331

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                +  R   A++    G     +    G   V+   +TY +
Sbjct: 332 RYRNTYQTRHTYASMMLSQGENIMWVSKQLGHVDVEMVIKTYGR 375


>gi|15838243|ref|NP_298931.1| phage-related integrase [Xylella fastidiosa 9a5c]
 gi|9106699|gb|AAF84451.1|AE003991_3 phage-related integrase [Xylella fastidiosa 9a5c]
          Length = 339

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 23/329 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P       + G + YY+  G   R   P   +        + L  +              
Sbjct: 12  PRFRVRPQKSGVVHYYYDHGGKPRKETPLGRDYGLAIKRWAELEHAQITPAI-------A 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
            T + +   YR        A N++     Y + +++   D    +  I   +IR  ++ R
Sbjct: 65  VTFRHVAERYRAEVIPTK-AHNTQRMHHIYLNYLLQFFDDPPAPFESIKPVNIRQYLDWR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +  SA + +     L+ W   +     +        +R  E  R    +D      + 
Sbjct: 124 -TSKVSANREVALFSHLWNW--ARSKGITDLPNPCAGIRRNKESGRDVYIDDATYHAVYQ 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +     R A +    +G R SD      +H+ N    I   KTG  + + +      L+ 
Sbjct: 181 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAILIK 240

Query: 247 MTPIGKETFFINNDKQKMNATQFS-------IWFKAKATKAGVNK---SAHGVRKFSATI 296
                K    + + +  ++              F+     AG+ K       +R  +AT 
Sbjct: 241 RILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATD 300

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
            AD      +  A  G  +V   E Y + 
Sbjct: 301 KADLAGDMRQAQAQLGHASVVMTEHYVRK 329


>gi|21221683|ref|NP_627462.1| integrase [Streptomyces coelicolor A3(2)]
 gi|4490997|emb|CAB38894.1| putative integrase [Streptomyces coelicolor A3(2)]
          Length = 384

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 104/370 (28%), Gaps = 40/370 (10%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + + G+     Y  +  G R R     ++               K +       K   L 
Sbjct: 17  KRKDGRYQCAVYVLQPDGTRARKFAYGKT--WAECDVKRRELLAKVDQGVPVPTKSAKLS 74

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--T 129
             +  +  +       +++   +E++    ++   G      +    +R  +   +   T
Sbjct: 75  EWMPYWLDNVIKPRRKLSTYDKYEAHVRLYLVPLLGAKRLESLGVADVRRFLVRLEKETT 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++A +    +R     A R+E +  N    VE P+  +  ++PWT ++   F +   + 
Sbjct: 135 AATAKESHRVLRSALTSACREELITRNVAKLVEPPRTDSRELKPWTLDETLDFLAASRKD 194

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------- 234
                AF   +  GLR  +        L  +   +  ++                     
Sbjct: 195 P-LYAAFVLAIAMGLRRGEIIGLRWSDLDLDNRVLYVRQQTQRRRGVLYDDDPKSRRRRA 253

Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATKA 280
                            +  A    G++                        F   A  A
Sbjct: 254 VPLPALCIAPLRWHRMRQAAARIKAGEQWQESGYVFTTRTGRQVEPRNVYRSFTRVAESA 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSR 337
           G+     H  R  +AT+   AG     +M   G   +      YT    D  R  + +  
Sbjct: 314 GLRVIRLHDARHGTATLLTAAGVAPRVVMEILGHSQISITMDVYTHVVQDTQREAMSHMD 373

Query: 338 RISSVVDSDD 347
           R+      D 
Sbjct: 374 RLLRKRRPDR 383


>gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011]
 gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001]
 gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007]
 gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011]
          Length = 295

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 87/279 (31%), Gaps = 9/279 (3%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
               A   S  K          P + +  I +Y  + +       +    ++        
Sbjct: 10  EAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHG 69

Query: 106 SGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
            G      +T +H+   +  ++H +P     + +++R  F WA   + V      S+ + 
Sbjct: 70  LG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKV 128

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +   +  RP   +  Q   +      +  L       +GLR +++ +A    L +    +
Sbjct: 129 RCPKQPPRPAGDDVWQAALAK--ADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLL 186

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              K G    V + D    L+  TP G                      K  +     + 
Sbjct: 187 VHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHL-----TAEHVGKLVSRALPGDA 241

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           + H +R   AT +         +    G  ++   E YT
Sbjct: 242 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280


>gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 99/318 (31%), Gaps = 28/318 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINS-----PRKKPTTLKWLISEY---RKSAHWGSLAVNS 91
            +    A  + L                   +   T+  +  E+     +      A  +
Sbjct: 75  TAKVFQAKKALLDADKELTADAIKNLMLGKEESKRTILKIFREHNDQIAALVGADFAPGT 134

Query: 92  RISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141
              +E+                D D +K+  + I          +K + ++ +++L + +
Sbjct: 135 LERYETSLKHTRDFIKWNYQEDDLDIKKLDYEFISQFEFWLKAKKKISHNTTMKYLANFK 194

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFL 199
            +    V++ ++  +P  + +  KR+ +       E  + ++     G    +   F F 
Sbjct: 195 KIVLLCVKRGWLMRDPFFAFKFTKREVDRQALTESELKKVWEKDMGTGRLAYVKDIFLFC 254

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-----DGFMKLLAMTPIGKET 254
            Y+GL  +D  +     +   I   K   T    T            ++++       + 
Sbjct: 255 CYTGLAYADVYKLKRTEIIEGIDGGKWITTKRQKTDTPSRIPLLPMALEIMEKYEDHPQC 314

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
              N     ++  + + + K  A   GV K  + H  R   AT      G     +    
Sbjct: 315 ENENRVLPVLSNQKMNSYLKEIADLCGVKKNITFHLARHTFATTVTLTNGVPIESVSKML 374

Query: 312 GWKTVDQAETYTKGADRI 329
           G + +   + Y K  DR 
Sbjct: 375 GHRNIKTTQQYAKIVDRK 392


>gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1]
          Length = 333

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 30/322 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + GK     +Y     GRRIR       +    Y               + R     L
Sbjct: 3   VRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYE-----QDFFAVKGETGRPLDDRL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             L+  +    H  +L         +  + + ++ G+    +  +       + R  +  
Sbjct: 58  SDLVKVWYD-LHGCTLKDG--KQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRLTEVK 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +       +  +F   +R         L    + K     +   + + + +       
Sbjct: 115 PETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLEECKA 174

Query: 189 GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +           L +G R  ++       +          K     +V +PD   +L+ 
Sbjct: 175 STNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELERLIF 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302
              +        +             F+    + G  ++     H +R   A+     G 
Sbjct: 235 KVGMPGSGRLFMSC---------RAAFRCAYQRCGF-QTPGQMTHILRHTFASHYMMGGG 284

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 285 DILTLQRILGHSSITMTMRYAH 306


>gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
 gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI]
          Length = 317

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 85/286 (29%), Gaps = 16/286 (5%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITT 116
             +   +K     +  + E+         A  +   +++      +   +   DY  +  
Sbjct: 2   RKVVRLKKLSVKWEQALEEFLLHKKAEGRAARTLFDYKARITPFFQAYPEAWPDYEALRR 61

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRP 173
                  +     P+S    L  +R  F W + +  +  NP       +   +  E    
Sbjct: 62  AVRLYLAQFTGKAPASYNLPLQYLRSFFSWCMAENMLHANPTEGIAKRKDEGKAREIPED 121

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229
             K  +         G +        + +G+R  ++              +   +     
Sbjct: 122 TLKNLLALPDRRTYAGIRDYALILLQVDTGIRPGEALNLKPSDFNIPQLEVVIPRETAKT 181

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   + +T +     + +           F + D ++M  T ++   +A   + G 
Sbjct: 182 RTQRTAVYSPVTAKAIKRLLDVRPPDWNDSVPVFASQDGKRMLETSWANRLRAYGKRIGA 241

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +   + +R  SA ++   GATA  +    G   +   + Y +  + 
Sbjct: 242 DLQPYMLRHTSAIMALRNGATAFFVQKQLGHSDMQMTKRYCRLVEE 287


>gi|318605376|emb|CBY26874.1| hypothetical protein Y11_13071 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 332

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 96/282 (34%), Gaps = 21/282 (7%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E   + +K  +TL  L+  + +S  +  LA  ++  +  Y  +++   G      I  +H
Sbjct: 45  EKFINEKKDKSTLNTLVESFFRSVDFIDLATETQKDYRKYATKLLPVFGAMHPDNIKPEH 104

Query: 119 IRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +R  ++ R  +  + A +  T M   ++W   + +V  NPC  V++ K ++       +E
Sbjct: 105 VRKYMDKRGLSSRTQANREKTFMSRAYRWGYERGFVKGNPCKGVKQFKEESRERYITDEE 164

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
               +K+        R A E       R +D         + +   I+  KTG     E 
Sbjct: 165 YNALYKAAPDI---VRAAMEIAYLCLARQADVLSLRKDQFRESGIYIRQGKTGAKQIKEW 221

Query: 238 PDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VN 283
            +     +A          I            +     F+  ++     A         N
Sbjct: 222 SERLRDAIALAESLPLQPGISSVYIIRQRTGLRYTRDGFNSRWRKAREAAKEAYPELDFN 281

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            + H ++    +       +  E  A  G K + Q   Y + 
Sbjct: 282 FTFHDLKAKGVSDL---EGSLSEKQAISGHKNMGQTARYDRK 320


>gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 83/257 (32%), Gaps = 12/257 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA 133
           + +++ +      +  +   +    +       +     K  T   +  +  R +  SS 
Sbjct: 12  VEQFKWNLMEQERSEATIEKYIRDINAFFEWLPEGKRVDKPVTIAYKQSLLERGYASSSI 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + ++   F ++  +        L ++     +E  +   +E  +   +   +  +  
Sbjct: 72  NSMVAALNSFFSYS--EWGDCRIRPLRIQAQTMVSEERKLTKEEYKRLLHAAKEKNERLY 129

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L  + +   GLR S+     V+ +            G + TV LP     +L      + 
Sbjct: 130 LVMQSICSVGLRVSELKFLTVEAVHRGRT--VVNNKGKMRTVVLPPKLCLILKQYCRRQR 187

Query: 254 T----FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
                 F++   + ++ +      K  A  AGV       H +R   A++  +      +
Sbjct: 188 VTGGSIFVSRTGRPLDRSNIWSAMKELAKAAGVAADKVFPHNLRHLFASVYYERFQDIVK 247

Query: 307 LMATYGWKTVDQAETYT 323
           L    G   V+    YT
Sbjct: 248 LADILGHSNVNTTRIYT 264


>gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 92/314 (29%), Gaps = 35/314 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI-----SFESYFDQIIRKSGDF 109
                    P   P +L  L+  + K     + +  +        +        ++ G  
Sbjct: 15  DDIYRQPVGPAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFIC--WAQERGIH 72

Query: 110 DYRKITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
               +T   +                  +P +    L  ++V F+W  +Q  +  NP   
Sbjct: 73  HAADVTRPVLERWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAAD 132

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +E P+ +    R     +  +      +     G + R   E L  +G+R  +  R    
Sbjct: 133 LELPRLEKHLPRTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETW 192

Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------- 264
                  I +I   K      + + +  +  L           +     K          
Sbjct: 193 SADFSRKILTIVQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVA 252

Query: 265 --NATQFSIWFKAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAET 321
              A   +         AG+ K +  + R   AT   + GA    + A  G ++V+  + 
Sbjct: 253 GLTANGITHAVVPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQX 312

Query: 322 YTKGADRIRLGIKN 335
           YT+ + R    +  
Sbjct: 313 YTQVSIRALQAVHA 326


>gi|170744751|ref|YP_001773406.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168199025|gb|ACA20972.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 413

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 115/383 (30%), Gaps = 44/383 (11%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPR 65
           P +       GK  +   +R     R     P+       A   A          ++  R
Sbjct: 26  PGLYLIVQPSGKKSWAIRYRINRQPRKFTIGPYPLFDLSAARERARQALQMAARGLDPYR 85

Query: 66  KKPTT----------LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
           +K             +  +++ Y +               E      ++   G      I
Sbjct: 86  EKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKPGYAEQAEGLLRNHVLPHWGHRRIGDI 145

Query: 115 TTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               + + V+       +  A +   + R LF +A+ ++ +   P L ++ P       R
Sbjct: 146 GRADVIALVDGLTDRGMTTGANRVFATTRALFNFALGRDLITSTPFLGLKPPLPNPSRDR 205

Query: 173 PWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +  +++  +      G       + LL +G R +++       L   +++I   +T  
Sbjct: 206 VLSDAEVRWAWLCAERIGFPFGPMVQLLLLTGTRRNETGEMVWSELDGTVWTIPGARTKN 265

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282
                V LP   +++LA  P           +            K +   A +       
Sbjct: 266 SLEHVVPLPPAAIEILAAVPRIAGRPGYVFTRNGSTPASDLSAGKRRLEAAMLTVAQSEA 325

Query: 283 -------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKGA 326
                          + H +R+ +A+  A  G   H + A    ++      A  Y + A
Sbjct: 326 ARRGEDPKAVTIPRWTLHDLRRTAASGMARLGTDPHVVEAVLNHRSGTISGVAAVYNRYA 385

Query: 327 --DRIRLGIKNSRRISSVVDSDD 347
             +  R  ++   +  + + +D 
Sbjct: 386 YLNEKRAALETWGKHVTSLANDH 408


>gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 329

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 74/303 (24%), Gaps = 49/303 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
            +   R       LA  +  ++  +  + IR  G      + T  + + +       + S
Sbjct: 14  FLDRLRNFIRLRGLAYKTEKTYVFWIKRFIRFHGRKHPESMGTAEVEAFLSHLVLQANVS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  R+        L  E  K+       ++ ++ ++         + 
Sbjct: 74  VATQRVALNALI-FLYREFLGTPLENLEYEAAKKPKRLPVVFSPDEARRVIDNLEGEFKL 132

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                +     +  +   R            ++  K        LPD  ++ L       
Sbjct: 133 VAMLIYGAGLRINEALRLRVKDVDFGMQQLIVREGKGSKDRVTLLPDRLIQPLQDQIHAA 192

Query: 253 ETFFI---------------------------------------------NNDKQKMNAT 267
                                                                +  M   
Sbjct: 193 LMQHQADLAKGCGSVYMPAGLSKKYPNASQEPDWQYVFPALDLSIDPRSGIRRRHHMMDR 252

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                FK    KAG++K   +H  R   AT   ++G     +    G   V   E YT  
Sbjct: 253 TVQKHFKHAIRKAGIHKPAGSHTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEIYTHV 312

Query: 326 ADR 328
             +
Sbjct: 313 VRK 315


>gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium]
 gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium]
          Length = 312

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 83/283 (29%), Gaps = 27/283 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHT 129
             L S +         +  +  ++     +      +    +   + I +  +    +H 
Sbjct: 20  ADLFSRWTSYIDA---SPKTIETYSKAIRRFFVYLMENGITQPQREDIVAYRDYLKLEHK 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           P++   +L ++++ F+W  ++                        T + + +        
Sbjct: 77  PTTVQGYLAAVKLFFQWTAQEGLYPNVADRVKGAKLDTEHKKDYLTTKQVARLLGAIDRS 136

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239
              G +       ++ +GLR     RA +  ++    ++     G     +         
Sbjct: 137 TLKGLRDYAMLSVMVTTGLREISIVRADIGDIRTAGDAVALFYQGKGHEEKADYVKLAEP 196

Query: 240 ---GFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287
                   L              +    N+ ++M     S   K +    G+     + H
Sbjct: 197 VEEAVRAYLKARGGADPKAPLFSSIANRNNGERMTTRSVSRVAKERLIAVGLESDRLTGH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            +R  +AT++   G T  E     G   ++    Y+   +R +
Sbjct: 257 SMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYSHALERAK 299


>gi|301054011|ref|YP_003792222.1| DNA integration/recombination/invertion protein [Bacillus anthracis
           CI]
 gi|300376180|gb|ADK05084.1| DNA integration/recombination/invertion protein [Bacillus cereus
           biovar anthracis str. CI]
          Length = 282

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 85/275 (30%), Gaps = 36/275 (13%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPC 158
           I    G     K+   HI+   ++      +    L     ++     AV+Q  ++ NP 
Sbjct: 9   IKPSIGMVALYKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPA 68

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              E PK++   I+ WT+E++++F     E S+  + +   + +G+R  +      Q + 
Sbjct: 69  DFAEIPKKERTSIQTWTEEEVKKFLLHSQE-SRYHIGYLLAITTGMRMGEVLGLRWQDVD 127

Query: 219 NNIFSIKTQK--------------TGTIITVELPDGFMKLLAMT--------------PI 250
               ++   +                +  T+ +P   ++ L                   
Sbjct: 128 FEKHTVTINQTSGHDNQIKKTAKTNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQ 187

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
             +    N     +    F   F      AG+     H +R   ATI    G     +  
Sbjct: 188 DFDLINCNEFGMIIKKANFRKKFIRAIHNAGIKEIKFHDLRHTHATILLKQGVNPKIISE 247

Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             G   +      Y+       +  +  +     +
Sbjct: 248 RLGHTDISMTLSVYSHVLPN--MQEEAVKNFGKSI 280


>gi|300764390|ref|ZP_07074384.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|300515042|gb|EFK42095.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 384

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 96/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLKNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK- 127
             K     + K+   G  + ++   ++  ++Q +   G+      I     +  +     
Sbjct: 58  KFKEFYELFMKTFKEGKSSQSTINLYDLAYNQFVDYFGEKRKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +            +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
              +  S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK 276
                + + +  ++ L         +             FI    + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLTWHSAYIKEYSIKNPQMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CSTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|229008342|ref|ZP_04165819.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752910|gb|EEM02462.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 385

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 113/382 (29%), Gaps = 52/382 (13%)

Query: 12  TKERTRH-----GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            K + +       +   Y++    R+ +     +  F     + L     +R+       
Sbjct: 5   HKYKKKGFNKDFWEYRIYYQDPITRKNK--EKSKKGFPNKAEAKLAAEEMERQLREGHIP 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              +LK  +  +      G++A N+    ++     II    +   + +     +  + +
Sbjct: 63  TDESLKSYLETWLNEYKKGTVAKNTFSLHQNSVKNHIIPYFNNILLKDVKPVLYQKFINN 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPW--TKEDMQ 180
                 S          ++    +    E ++ NPC  VE   +K      +  ++   +
Sbjct: 123 LTEKGYSRRTVEIVHGTMYNAMKKAIILEKISKNPCDGVEIKIKKKNPEIQFIESELISR 182

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NN 220
             +  +       + ++ L+ +G+R  ++       +                      N
Sbjct: 183 FLQEAYKYDYIYWIFYKTLIETGMRKGEAAALQWTDVNLKEKTININKSLDFREATKNPN 242

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF---------------INNDKQKMN 265
           I    T+   +  T+ + +G    L      +                     ND   M 
Sbjct: 243 IMFGDTKNYNSKRTITISEGLANDLHFHQKYQNQNKLALNDNYNFDLNLVLCRNDGNYMP 302

Query: 266 ATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            +     F     KA +     H +R   A +  +AG +   L    G  ++    + Y+
Sbjct: 303 KSSLFNSFSRILKKANLPPLPIHSLRHTHAVLQLEAGVSMKYLQERLGHGSMQITSDVYS 362

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
             +   +L  +   +    + +
Sbjct: 363 HIS--KKLDKEAMNKFEEHMRN 382


>gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7]
 gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7]
          Length = 332

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 83/322 (25%), Gaps = 30/322 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + GK     +Y     GRRIR       +    Y               + R     L
Sbjct: 3   VRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYE-----QDFFAVKGETGRPLDDRL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             L+  +    H  +L         +  + + ++ G+    +  +       + R     
Sbjct: 58  SDLVKVWYA-LHGCTLKDG--KQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRLTGVK 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +       +  +F   +R         L    + K     +   + + + +       
Sbjct: 115 PETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLEECKA 174

Query: 189 GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +           L +G R  ++       +          K     +V +PD   +L+ 
Sbjct: 175 STNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELERLIF 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302
              +        +             F+    + G  ++     H +R   A+     G 
Sbjct: 235 KVGMPGSGRLFMSC---------RAAFRCAYQRCGF-QTPGQMTHILRHTFASHYMMGGG 284

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 285 DILALQRILGHSSITMTMRYAH 306


>gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965]
 gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965]
 gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533]
          Length = 391

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 121/381 (31%), Gaps = 58/381 (15%)

Query: 14  ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F     +  +G R+++      T+  A   A+     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEA--EAVFNKLSQTKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  F + +I   G+    KIT   ++   + + 
Sbjct: 70  IKVSELRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    +     LF++ +R  YV+ NP   +  PK+ +   R        + +    
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTREELNQF 188

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQKTGTIIT 234
                  G      F+ L  +GLR S++     Q +         N          TII 
Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQ 248

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-------------------- 274
                   ++L ++   KE       KQK+ + +     K                    
Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVN--------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A    +          + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADR-IRLGIKNSRRI 339
           + YT   ++     +   +++
Sbjct: 369 DIYTHVNNKNKEDAVNALKQL 389


>gi|238790806|ref|ZP_04634564.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
 gi|238721121|gb|EEQ12803.1| Phage integrase [Yersinia frederiksenii ATCC 33641]
          Length = 336

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 106/336 (31%), Gaps = 39/336 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSP 64
           +PP     RT  G+  + F+   G  IRL       +    AY + +     +       
Sbjct: 13  MPP-----RTCRGRSAFEFKPKLGGTIRLCGFDASPAQVWAAYEALINDKQNENV----- 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                   WL+S +  SA +  LAV ++  +  Y  +++   G+     I  +HIR  ++
Sbjct: 63  ------FNWLVSRFFLSADFIELAVETQKDYRKYAVKVLSVFGEVHPDAIKPEHIRKYMD 116

Query: 125 SRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R     + A +       +F+WA  +  V +NPC  V++ K  +         + +   
Sbjct: 117 KRGVKSRTQANREKAFTSRVFRWAYERGMVKMNPCKGVKQFKETSRTRY---ITNKEYDA 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-------LQNNIFSIKTQKTGTIITVE 236
            +       ++A E       R +D               +Q +   I   K        
Sbjct: 174 LYQVSPPVVQVAMELAYLCCARQADILGMKKNQLIDDGILIQQSKTGISQIKAWGPRLTA 233

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGV 289
           +     +L     +            +     F+  +     +A           + H +
Sbjct: 234 VIKLASQLPLNRGMSSIFVIHQQSGARYTRDGFNSRWLKAKAEAKEKYPELEFNFTFHDL 293

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +    +       + +E  A  G K   Q   Y + 
Sbjct: 294 KAKGISDL---SGSLYEKQAISGHKNAAQTARYDRK 326


>gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17]
 gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17]
          Length = 407

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 85/270 (31%), Gaps = 21/270 (7%)

Query: 92  RISFESYFDQIIRKS-GDFD--YRKITTKHIRSGVESRK-------HTPSSAIQFLTSMR 141
           +   E           GD+     +I  +++   +  +        HT      +    +
Sbjct: 134 KRVLEGALKNFQDFIVGDYPQFANRIEPRNLSHDMMEQFARYLENVHTGEGVRTYWQRFK 193

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEF 198
            L  +AV +E +  +PCL ++   +     +     +  Q         E    R AF  
Sbjct: 194 RLINYAVEKEVIKKSPCLKIKIMNKGDILNKDILSREELQKLFATHYPNESEVVRRAFAV 253

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKE 253
             ++G+R  D        +  +   +  +++       +    + L       +    + 
Sbjct: 254 TCFTGIRHCDLATLTYGCIDYSNKIMTFRQSKVQHDSNVSGVSIPLNDTLVAIIGEKPEG 313

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
               +      +    +   +    +AG++K  + H  R   AT     GA    +    
Sbjct: 314 AKDSDLIFALPSIEGSNKVLRHWIKRAGIDKHITWHCGRHSFATNLLSTGANIKVVSELL 373

Query: 312 GWKTVDQAETYTKGA-DRIRLGIKNSRRIS 340
           G  ++   + Y +   D+ +  I +  +I 
Sbjct: 374 GHSSLKFTQKYVRALDDQKKAAINSLPQID 403


>gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19]
 gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM
           18228]
 gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19]
          Length = 340

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 91/308 (29%), Gaps = 42/308 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHI--- 119
           L   ++ Y         +  +   + + F   I+               ++IT + +   
Sbjct: 8   LTDYLNRYLTME--CGCSYQTVKQYSATFMLFIQYMYKIELIAPEKLFLKEITKERVLGF 65

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                E+RK + S+    L+++R  FK+   +E   +    ++   K+K    +  +   
Sbjct: 66  LHWLEETRKCSISTRNNRLSALRSFFKYLQYREVKGMAYWQAILSIKQKRTPFKEMSYLT 125

Query: 179 MQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------NN 220
            +       Q      +G +  +    L  SG R  +      ++++             
Sbjct: 126 TEGVQALLEQPDLSTRKGRRDFILMGLLYDSGARVQEIINLTPENIRLGETTTVKLHGKG 185

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                   +   +           L  +       F N   +++         K  A  A
Sbjct: 186 NKIRVVPLSTNQVKNLRLYMEENNLFASQYRCHPLFPNPKGERLTRMAVLDIVKRHAKNA 245

Query: 281 GV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                     N S H  R   A    +AG     +    G  +    E Y + ++  +L 
Sbjct: 246 RKQYLELIPSNISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASE--KLK 303

Query: 333 IKNSRRIS 340
            +   +++
Sbjct: 304 EQALEKLA 311


>gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 280

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/263 (11%), Positives = 77/263 (29%), Gaps = 30/263 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147
           + ++  ++++   Q      D        +     +       ++  + +  M+V + + 
Sbjct: 2   SSHTIRAYKNDLMQFYNSDHD------NVESYIEHLTQSSIKTNTLRRKIACMKVFYNYL 55

Query: 148 VRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK-------------SFWSEGSQPR 193
             Q  +  NP   +    + +    +    + ++                       +  
Sbjct: 56  KYQNIIEENPFNQLRFQFRTEKILPKTIPHDILKSIFIYLEQKVIVSKTDYQKQHAERNL 115

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           L    LL +G+R S+ C   ++ +   N    I  +     I          LL      
Sbjct: 116 LIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFLGDQKTFNLLETYINK 175

Query: 252 KET------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303
                    F   +  + ++     +  K    +   +++   H  R   AT+  D+   
Sbjct: 176 TRNESNDFLFPGKHSLKPLSEQSVRLVIKRIVEQNNFSRTITPHMFRHSFATMLLDSDVD 235

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G  ++   + YT  +
Sbjct: 236 IRYIQQMLGHSSISITQIYTHVS 258


>gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 308

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/303 (10%), Positives = 94/303 (31%), Gaps = 37/303 (12%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126
           T++ + + +++      +  ++  ++     + ++   GD D   +  + +++ V  +  
Sbjct: 5   TVREIAAAWKEYKRPY-VKQSTMAAYVLILENHVLPYFGDGD--SLHEQAVQAFVLQKLG 61

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  +    L  ++++ K+ V+ E++              ++ +   +  + ++  ++
Sbjct: 62  NGLSVKTVKDILIVLKMVMKFGVKNEWMTYYEWDIKYPTTSTSKELEVLSVANHRKILNY 121

Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                +   L     L +GLR  + C      +     +I   +T   I +   +     
Sbjct: 122 IQSHFTFTGLGIYISLSTGLRIGEICALKWSDINVADGTITVSRTIERIYIIEGEKKHTE 181

Query: 245 LAMTPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKAT 278
           L +     +                                  +      +  ++     
Sbjct: 182 LVINTPKTKNSCREIPMSKELLSMIKPLKKVVNEDFYVLTNDERPTEPRTYRNYYNGLMA 241

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKN 335
           K  + K   HG+R   AT   +AG     +    G   +      Y     ++ +  I  
Sbjct: 242 KLDIPKLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKRCITK 301

Query: 336 SRR 338
             +
Sbjct: 302 MFK 304


>gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 407

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 95/310 (30%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDVRQRVGHTISKDSLQKYSVLRRHFAEFLIYKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ L +++ +  +A ++ Y+  +P L+
Sbjct: 152 GKKDIGLAEFTPSIVQDFELYLSTAAGCAYNTSVKKLKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKEIAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   G+ K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADICGIKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLGK 400


>gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
 gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC
           29799]
          Length = 344

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 142 VLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEF 198
             +K+   +  +   NP   ++ P+ K       + ++  Q           +       
Sbjct: 115 SFYKYITSKAKLMDENPMQDLDSPRLKKALPHYLSLDESIQLLESVDGENKERDYCILII 174

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------PI 250
            L  GLR S+     +  ++ +       K      + L +   + +            I
Sbjct: 175 FLNCGLRISELVGLNLTDIRKDQLR-VLGKGNKERILFLNEACRQAIDDWLAVRGTQGII 233

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
            K   FI     +M         K + T AG++    SAH +R  +AT+    G     L
Sbjct: 234 DKNALFITRRHTRMTTDAVHYMIKNRLTAAGLDASMYSAHKLRHTAATLMLQNGVDVRTL 293

Query: 308 MATYGWKTVDQAETYTKG-ADRIRLGIKN--SRRISSVVDSDDP 348
               G   ++  + YT   +D +R   K     R+     +  P
Sbjct: 294 QEVLGHDHLNTTQIYTHVDSDDLRTAAKANPLGRVGRKKSTPPP 337


>gi|289645001|ref|ZP_06477038.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505195|gb|EFD26257.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 446

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/414 (12%), Positives = 98/414 (23%), Gaps = 91/414 (21%)

Query: 14  ERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G+     Y     GR IR      +         LT     R           T+
Sbjct: 31  RQRAGGRWEGRAYVVTSDGREIRRSVYGHT--WEEAHEKLTRLQAARMNGARVPVGGMTV 88

Query: 72  KWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              +  + +      L   +  S+E+     ++   G      +    IR+     K   
Sbjct: 89  GDYLLHWLREIVRDRLRDTTYRSYETVILVHLVPVLGRKKLASLQPSDIRAAFNRLKTVC 148

Query: 129 -----------------------TPS---------------------------SAIQFLT 138
                                   P                            +      
Sbjct: 149 RCCALGKDAAREERAQHTRAARTRPRKNARVIPGARCCAKTPPECCGEFLADGTIRYAHR 208

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +RV  + A  +  V  N   ++    R      PWT  + ++F      G +    +  
Sbjct: 209 VLRVALQDAFLEGLVTQNVAKNLRLNHRYRPHFTPWTSGEAREFLEAA-RGGRLYALYVL 267

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------------- 233
            L  GLR  +        +  +   ++ + +   +                         
Sbjct: 268 ALMLGLRKGELLGLRWSDIDLDRGVLRVRTSLQRVNGQLRLGPVKTDSSARVVAMSASCV 327

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                  E  D        T    +  F +     +     +  F A   +AG+ +   H
Sbjct: 328 RVLRGHKERQDTERDAAGRTWTDHDLVFASARGTPLEPRNVTRQFDALCRRAGLRRIRFH 387

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLGIKNSRRI 339
            +R   AT+  + G T   +    G  +       Y +  +   R        +
Sbjct: 388 DLRHTCATLLYEQGVTIDNIQNVLGHSSPTITKMIYVEVTEIIQRGAADRLDHL 441


>gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 371

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 78/325 (24%), Gaps = 72/325 (22%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS 121
           ++ EY       + +  +  ++        R                     I T  +  
Sbjct: 28  VVDEYLAHLVDRNYSPKTVRAYGYDLLSFCRWLVEEESATGLRDDAGSPLDAIDTDVLLR 87

Query: 122 GVESRK----------------------HTPSSAIQFLTSMRVLFKWAV-RQEYVAINPC 158
            + + +                      + PS+  + L ++  LF +   R   +     
Sbjct: 88  YLRACRDATVPGRPGPNVVAMSGRRVDRYAPSTINRRLAAISSLFGFLTLRDPDLRSPVP 147

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW-------------------------SEGSQPR 193
              E                 ++                               +  + +
Sbjct: 148 KGKEARWVVAGERSGLLAHTRRRPAKRSSLRLREPRRLPVALSQGEAAKLLGSFKSWRDQ 207

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGK 252
                +LY GLR ++     V  +      ++   K      V L      ++ +  + +
Sbjct: 208 SIAGLMLYCGLRSAEVLGLDVTDVDIGGGWLRVMGKDQRERRVPLDVDLGSVIQVYLLTE 267

Query: 253 ETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
                +          +  Q +        F+      GV     H +R    T  A+AG
Sbjct: 268 RPESDSPRLFLVAKGAHRGQPLTPAGLRTIFRYHRALTGVAAGHPHTLRHTFGTALAEAG 327

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                + A  G   VD    Y   A
Sbjct: 328 VDLAVMQALLGHAHVDTTARYIHLA 352


>gi|256855129|ref|ZP_05560490.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|307291608|ref|ZP_07571484.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|256709642|gb|EEU24689.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|306497369|gb|EFM66910.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|315028786|gb|EFT40718.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
          Length = 397

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 111/346 (32%), Gaps = 49/346 (14%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           ++ ++G   YYFR        G++I   R  +  +      Y   L      +    S  
Sbjct: 7   KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSEN 60

Query: 66  KKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   T    I   +        + + +  +      +            I    +++   
Sbjct: 61  KDKMTFNHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQL 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  S   ++ +++ LF  A+ +  V      NP   +   K++   I  WTKE+ +
Sbjct: 120 KLSKKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN---------------- 220
           +  S   +    +      L+    +G+R  ++     + +  +                
Sbjct: 178 KVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWKDIDFDSGVLTINKTLYYKNQS 237

Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
               ++ +   ++  + L +  +  L+     ++      F ++ +         +   +
Sbjct: 238 DYRFVEPKTKASVRHIVLDECTLNYLSKWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIE 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A  AG+++   HG+R   A++    G     +    G + ++  
Sbjct: 298 RYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|152983278|ref|YP_001353923.1| phage-related integrase [Janthinobacterium sp. Marseille]
 gi|151283355|gb|ABR91765.1| phage-related integrase [Janthinobacterium sp. Marseille]
          Length = 342

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 104/340 (30%), Gaps = 31/340 (9%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +  LPP + + R R GK  Y+F  G   R   P   +      Y+ AL            
Sbjct: 8   NRHLPPHM-RARIRSGKTYYFFDLGGRPRKESPLGTD------YIEALRKYVELAGDETP 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             +   T   L  +Y+      S A ++R    S    + +        +I   H++  +
Sbjct: 61  VHEA--TFDDLSKKYKLE-EIPSKAESTRRVQNSDIKHLDKFFAKAPLGEIRPMHMQQFL 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +  K TP++A +       +  W   + +   +           T G R     D     
Sbjct: 118 QFHKATPTTANRCKRLFSSM--WNKARAWGYTDEPNPCTGIAGFTLGKRETYTTDEVFKA 175

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +       R A +    +G R  D+ ++    + ++  SI+  KT   + + +      
Sbjct: 176 VWECASEPLRDAMDLTYLTGQRPGDALKSTEHEISDSYLSIQQGKTKQKLRIAIVGELAA 235

Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGVNK----------SA 286
           L+      K  + + +          ++        F A   KA                
Sbjct: 236 LIDRIKERKRKYKVVHTALLVNTQGMQLTKAVLRKHFDAAREKACEKYPELEPEIKAFWF 295

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           + +R  +A   A+            G ++       Y + 
Sbjct: 296 YDLRAKAADDKAEE-IDEQAASDLLGHESTKTTRRHYLRR 334


>gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 85/309 (27%), Gaps = 38/309 (12%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-----------SGDFDY- 111
           + P  L  L+  +  +        + ++  S+   F  +++             G  D  
Sbjct: 2   RDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLD 61

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +    +      R +   S    LT++R  F++A  +          V     + +  
Sbjct: 62  ASLVGAFLEDLGNRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRR 121

Query: 172 R---PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 T+ ++    +        G +        + +GLR S+      + +     + 
Sbjct: 122 TLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGAH 181

Query: 225 KTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKA 277
              +          L      +L      +                ++A           
Sbjct: 182 VRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARHV 241

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            KA  +         S H +R  +A     AG     +    G ++V+  + Y   AD  
Sbjct: 242 AKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYL-DADLA 300

Query: 330 RLGIKNSRR 338
            L  +   +
Sbjct: 301 -LKEEALAK 308


>gi|326331572|ref|ZP_08197862.1| integrase [Nocardioidaceae bacterium Broad-1]
 gi|325950828|gb|EGD42878.1| integrase [Nocardioidaceae bacterium Broad-1]
          Length = 417

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 104/387 (26%), Gaps = 61/387 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---------GSTPKREYINSP 64
                G+I   +    GRR   P   E +                   G TP +      
Sbjct: 16  YTLGSGRIQARYTGPDGRRHPAPMTFEDSDAATAWLLRERRLLEEDPTGWTPPKARAAKK 75

Query: 65  RKKPTTLKWLISEYRKSAHWGS--LAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
           + +  T       +  +       LA  +R  ++   D+  +    +   + IT + +  
Sbjct: 76  KSQAVTFGAFAERWLLTRKVKGRPLAGRTRDHYQDLLDRFILPTFEETVVKHITPEMVDD 135

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++    TP+        +R + K AV +  +  NP   V      +      T    +
Sbjct: 136 WYDATALDTPTYRAHAYGLLRTILKTAVERNVIPANPA-HVRGAGSVSAAHDVETATLNE 194

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------ 228
                    ++ RL      +   R  +      + +      I+ ++            
Sbjct: 195 VATIVAMMPAKQRLMILLGAWCSNRYGEIAELRRRDIDLKRMVIRVRREVVWVKDADGRY 254

Query: 229 -------------TGTIITVELPDGFMKLLAMT-------------------PIGKETFF 256
                            I   L       L                              
Sbjct: 255 VATVKAPKTDAGSRDAPIPPHLVPDIKDHLKHHAADGLDGLLFPNAQGGQIRHSTFYGQA 314

Query: 257 INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
              DK+     +    + A    AG  +   H +R  + T +A AGAT  ELMA  G  T
Sbjct: 315 PVIDKKTKKIRRKGHGWYAARHAAGRPDLHFHDLRHTALTNAAIAGATIAELMALAGHST 374

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSV 342
              A  Y   A         ++R+S +
Sbjct: 375 PAAAMRYQHAARDR--MQDLAKRLSEM 399


>gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
 gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612]
          Length = 359

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 94/311 (30%), Gaps = 43/311 (13%)

Query: 72  KWLISEYRKSAHWGSLAVN-SRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VES 125
           + L+  + K           +  ++       +I   G+++ + ITT+ ++       E 
Sbjct: 24  RDLLENWLKEKEKEGKVKIKTLENYRRQVRVHLIPMLGEYEVQDITTEVLQDFVFYLEEE 83

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P++       +  + K A     +  NPC SV  PK      +   + +  + +  
Sbjct: 84  NGLNPTTVKNIFGRIATVLKKAHEDGIIFENPCNSVVLPKANARTGKALNRLEQDKLEKV 143

Query: 186 WSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----- 239
            S     + L+    L+SGLR S+      + +      I  + +   I+ ++ D     
Sbjct: 144 LSNDEGSKTLSVYIALHSGLRISEVTALKWKDIDMENEFIYVRHSFQRISQQMTDGTHKS 203

Query: 240 ----------------GFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSI 271
                               LLAM             ++              +      
Sbjct: 204 SLLLGKPKSLKSVRSIPMNDLLAMKIKEYYKGLEKWQRKGEMFVISKGNGSFYDVRTIQR 263

Query: 272 WFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR- 328
           +F      A ++    H +R   AT +   G     +    G   +      Y   +D  
Sbjct: 264 YFNDVCKVACIDHHHFHDLRHTFATNAKACGIDIQLISEMLGHAQIKTTMDIYVHPSDTD 323

Query: 329 IRLGIKNSRRI 339
            +  I+   R+
Sbjct: 324 KQNAIQLMNRL 334


>gi|261245548|emb|CBG23343.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
          Length = 331

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 97/323 (30%), Gaps = 59/323 (18%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T +     + +          S    +S     ++       + IT   I S ++   +
Sbjct: 1   MTFEEACVRWLEEKAHKK----SLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTN 56

Query: 129 TP-----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                                          ++    L+ ++ L + A  +E+  ++   
Sbjct: 57  RRHEENWKLMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLR-AAEREWKMLDKAP 115

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            ++ P+ K + IR     + ++      E    +   EF L +GLR S+      Q +  
Sbjct: 116 IIKVPQPKNKRIRWLEPHEAKRLIDECQE--PLKSVVEFALSTGLRRSNIINLEWQQIDM 173

Query: 220 N----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------- 268
                    +  K+   I V L D   ++L         +     +              
Sbjct: 174 QRKVAWIHPEQSKSNHAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVR 233

Query: 269 -----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +  ++A   +AG+ +   H +R   A+    AG     L    GW++++    Y
Sbjct: 234 KMRYDANTAWRAALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRY 293

Query: 323 TKGADRIRLGIKNSRRISSVVDS 345
                   L   +    +  +DS
Sbjct: 294 AH------LAPNHLTEHARQIDS 310


>gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC
           43243]
          Length = 432

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/429 (9%), Positives = 96/429 (22%), Gaps = 99/429 (23%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  +    +                      +    TL 
Sbjct: 7   RKKGKKWYYRFYVEDTSGNLVQKEFAGTESKSETEKLLRQAMEDYEAKRFIAKAGNITLG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTP 130
            L+  +  +    G+L+  +  ++     +I +        + +T+ H++  ++      
Sbjct: 67  ELLDLWAEEELKTGTLSNGTVGNYLQAVGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGG 126

Query: 131 SS------------AIQFLTSM----------RVLFKWAVRQEYVAINPCLSVERPKR-- 166
           +                F   +          +    +   Q  V  +     +      
Sbjct: 127 TVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETDLFADET 186

Query: 167 --KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQ----- 218
               + ++P + E  ++      + S+  +    +  ++GLR  +      Q +      
Sbjct: 187 ATDRDKVKPLSFEMYRKLIEQLGKRSKDAILPVQIAYFTGLRLGEVAGLTWQDINLEEQY 246

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    I V      +  +      ++        +     
Sbjct: 247 LTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRN 306

Query: 268 QFSIWFKA------------------------------------------KATKAGVN-- 283
            +    +                                               AG    
Sbjct: 307 FYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVP 366

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
                  H +R    T     GA   ++    G   V      Y       R   + S R
Sbjct: 367 ELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHAT---REAKRTSAR 423

Query: 339 ISSVVDSDD 347
           +   V  +D
Sbjct: 424 LLDKVAGND 432


>gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 303

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 82/273 (30%), Gaps = 16/273 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKH 128
               + E+  +      AV +   +  +     R+  D       +    +    + R+ 
Sbjct: 4   WHDALEEFLLTKQAEGRAVRTLKDYRKHVSAFFREHEDAWPDHHALKRAVVAHFADLREL 63

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +        ++  F W +R+EY+  NP       +             K  +   +  
Sbjct: 64  SATHYNLRREYLKAFFSWCIREEYLPKNPADNIPKRKNDGTPRNLDHDTLKRLLALPRKD 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--------LQNNIFSIKTQKTGTIITVEL 237
              G +      F L +G R  ++ +    H        +  +  +        +++ + 
Sbjct: 124 TYAGVRDYALMLFQLDTGTRPGEALQLLPDHFNLAALEVIIPSGTAKTRAARTVVVSPQT 183

Query: 238 PDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                +LL++ P               ++     +         + GV  +A+ +R  SA
Sbjct: 184 AKAIRRLLSVRPADWTDDVPVFASASGRRFTVHGWDQRLAKYGERLGVRLTAYMLRHSSA 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +    G     L    G  ++   + Y   AD
Sbjct: 244 ILFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 276


>gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 317

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 40/288 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHI-- 119
           I EY +     +L+  +  S+E+  ++                         I ++HI  
Sbjct: 7   IREYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------- 169
             R   + R ++ ++    LT+++V F +  ++  +      ++     + +        
Sbjct: 67  YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNVETLTE 126

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             IR   +   ++ +       +      FLL +G R  +      + +      +    
Sbjct: 127 EQIRLILRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLRWEDIDLKAGQVVFPD 186

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKA 277
           TG   T +      KL++     K+    +                M+     + F   A
Sbjct: 187 TGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKLVFVRLA 246

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +        SAH +R F  +    AG +   +        ++    Y
Sbjct: 247 QELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKY 294


>gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida]
 gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida]
          Length = 307

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   HI + +E        P++   +L++
Sbjct: 24  SKRSRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAGKAPATINTYLSA 83

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         PK +                   ++G 
Sbjct: 84  LKGVALEAWTMKQIDTDSFQHIKQVRSVRGSRLPKGRALERHEIRSLFFTCESDSSAKGL 143

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     +   +  +       K        +P G  K L    
Sbjct: 144 RDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRLDKWV 203

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                        +   F +   ++M+        + +  +AG+   + H +R+  A+  
Sbjct: 204 EEVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEMFAPHDLRRTFASSM 263

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R++   +   
Sbjct: 264 LDNGEDIVTVKDAMGHSSIATTQKYDRRGDERLKRASQRLD 304


>gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 332

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 83/309 (26%), Gaps = 38/309 (12%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKIT 115
           + P  L  L+  +  +       ++ ++  S+   F  +++ +               + 
Sbjct: 2   RDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLD 61

Query: 116 T----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                  +      R +   S    LT++R  F++A  +          V     + +  
Sbjct: 62  ASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRR 121

Query: 172 -------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                  RP  +  +         G +        + +GLR S+      + +     + 
Sbjct: 122 ALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAH 181

Query: 225 KTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKA 277
              +          L      +L      +                ++A           
Sbjct: 182 VRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARHV 241

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A  +         S H +R  +A      G     +    G ++V+  + Y   AD  
Sbjct: 242 AQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYL-DADLA 300

Query: 330 RLGIKNSRR 338
            L  +   +
Sbjct: 301 -LKEEALAK 308


>gi|315640367|ref|ZP_07895482.1| bacteriophage integrase [Enterococcus italicus DSM 15952]
 gi|315483872|gb|EFU74353.1| bacteriophage integrase [Enterococcus italicus DSM 15952]
          Length = 388

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/373 (12%), Positives = 108/373 (28%), Gaps = 58/373 (15%)

Query: 12  TKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            +   + G   + F+         G+ ++    +  T   A   AL+      E     +
Sbjct: 5   KRYNRKDGTEAWQFQAYLGVNPATGKPVKTTRRNFKTKKEA-QLALSRLQVDFEKNGLEK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           +     K L   +        +   ++   + +F+  I++  GD    +IT  + +  + 
Sbjct: 64  RSSMKFKELYELWFAQHK-KDIKPTTQQRIQIFFNNHILKAFGDRFINEITPLYCQKQLN 122

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +     S+     T + ++FK+A     +  NP      PK K + ++  +     + + 
Sbjct: 123 AWSEKYSTYKAMRTYVSMVFKYANLIALMDDNPMERTIIPKAKKKPVKSDSDSYYTKEEV 182

Query: 185 FWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
                        +    F  L + GLR  ++     + +  +  +I   KT        
Sbjct: 183 QAFLRCLLRLKDYRAHTFFRVLAFVGLRKGEAMALLWEDIDFDNNTINVSKTLAELQSGK 242

Query: 233 ------------ITVELPDGFMKLLAMTPIGK-----------------------ETFFI 257
                        T+ +    M++L                                   
Sbjct: 243 AIIQDPKTESSNRTISVDSNTMRILKEWRNHIKQNRLKLGIRDTNFGKKLVFSNSIYTNE 302

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N    K                  +    H  RK +A++  ++GA+  ++    G  +  
Sbjct: 303 NQYLYKSYPNNVMKRVSKHYPDMKI-IKVHDFRKTNASLLFESGASIKDVSQRLGHSSTK 361

Query: 318 -QAETYTKGADRI 329
              + Y K     
Sbjct: 362 ITTDIYIKVTQAK 374


>gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2]
 gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 308

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 93/304 (30%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVE 124
           +  T+K +   +++      +  ++  ++     + I    G+  +  +   +       
Sbjct: 3   QKKTIKEISVLWKEDKK-QYVKQSTFAAYVLILENHIYPTFGEMYELEENKVQEFALQKI 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   +  S    L  ++++ K+ V+  Y+           + + + +   +    ++  S
Sbjct: 62  NNGLSKKSIKDILIVLKMILKFGVKHGYLNYKEWEIRFPTEDEKQHLEVLSISHQKRIMS 121

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           F  E  +   L     L +GLR  + C      +   +  I  ++T   I +   +    
Sbjct: 122 FIQEHFTFKNLGIYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHT 181

Query: 244 LLAMTPIGK--------------------------ETFFINNDKQKMNATQFSIWFKAKA 277
            L +                                 + + N+++      +  ++K   
Sbjct: 182 ELIINTPKTKNSIREIPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLM 241

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
               +     HG+R   AT   ++      +    G   +    + Y     ++ +  I 
Sbjct: 242 KDLNIPELKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTTLDLYVHPNMEQKKKCID 301

Query: 335 NSRR 338
              +
Sbjct: 302 RMIK 305


>gi|224282772|ref|ZP_03646094.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 436

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 92/355 (25%), Gaps = 50/355 (14%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            R      +T   A           +        KP T+      +        L   + 
Sbjct: 79  RRRATAFGATRAEAERRLNEKIAELQRVGRLGYTKPPTVAEWCDHWLNDICKPHLKPRTW 138

Query: 93  ISFESYFDQ-IIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWA 147
            ++ S  ++ +    G     ++   H R      +E +  +  +A     ++    + A
Sbjct: 139 GTYASVIERNVKPAIGAVRLDELKPAHFRRMERYVMEEQGKSSGTAGSAWRTLHKALEDA 198

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           V +  +  NP +    P+   +     T E      +  ++ +  RL +     +G+R  
Sbjct: 199 VLEGVIERNPAVKGTAPRVALKERAALTPEQAADLIAAETDDT-WRLMWMLAFMTGMRQG 257

Query: 208 DSC-----------------------------------RAGVQHLQNNIFSIKTQKTGTI 232
           +                                           L N ++  + +     
Sbjct: 258 ERLGLTEDELRRDGDRLIILVEWQAQHLTKREVEGLPKGVECTPLGNGMYRTRPKTEKGR 317

Query: 233 ITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
             + LP+     L               F ++    +        +     + G+     
Sbjct: 318 RAIPLPEALADQLLAHIERHGVNGDGLVFHDDRGLPLTGCVERRRWYRALDRVGLGHEYV 377

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSRR 338
            H  R  +ATI    G       A  G   V    E YT    DR+        R
Sbjct: 378 PHSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVER 432


>gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
 gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684]
          Length = 335

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 91/326 (27%), Gaps = 52/326 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +          ++P++ P     L+ + R+S         +  ++  +  + I       
Sbjct: 1   MISEEEVSVRADNPKRPP----KLLDQMRESMRSRHYRPRTEETYCQWVRRYILFHKKQH 56

Query: 111 YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            + +    I + +      +K + S+  Q L+++  L++  + ++   +   +   +PKR
Sbjct: 57  PKDMGESEINAFLTYLAVKKKVSASTQNQALSAILYLYRHVIGRDIGDLGEVIRARKPKR 116

Query: 167 KTEGIRP------WTKEDMQQFKSFWSE-GSQPRLAFEFLLY------------------ 201
               +          + +  ++       GS  RL     L                   
Sbjct: 117 LPVVMTREEVKAVLDQLNGDKWLMASLLYGSGLRLMECLQLRVQDLDFAGRELLVRDGKG 176

Query: 202 -----SGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIITVELPDGFMKL 244
                + L  S         +       K                           +  +
Sbjct: 177 GKDRRTMLPQSLVAALQEHLIHVKKIHDKDLNDGCGKVPLPGALDRKYPQAPWDWRWQWV 236

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
                  K        +  ++ T      +   ++AGV K    H  R   AT   +AG 
Sbjct: 237 FPQANRWKNKITGEEGRHHVHETILQRAVREAVSRAGVVKRVGCHTFRHCFATHLLEAGY 296

Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328
               +    G K V+    YT   ++
Sbjct: 297 DIRTIQELLGHKDVNTTMIYTHVLNK 322


>gi|256544839|ref|ZP_05472211.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399728|gb|EEU13333.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 411

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/415 (10%), Positives = 104/415 (25%), Gaps = 80/415 (19%)

Query: 1   MTPSLRLPPFVT----KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    +    V     + +  +G   + ++   GRR  +            +  L  +  
Sbjct: 1   MVKRRKDSKGVVLKDGEYQRSNGTYEFKWQDKIGRRKSIYAKTLKELREKELDILRNTID 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKIT 115
                 S      ++  + + +  +     L  N+  ++   + Q +    G      I 
Sbjct: 61  GINNEGSS----LSVNDIFNLW--TKVKRGLKDNTFKNYIYMYKQFVEPTFGRIKLSDIK 114

Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VER 163
              +RS     K       S+     T +  + + AV  EY+  NP  +           
Sbjct: 115 RSDVRSFYNRLKEDQGLMVSTIDCVHTVLHQVLELAVDDEYIRFNPSDNALKELKVAYRN 174

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH------- 216
              K + +    +   +++ S   E  +    F  +L++G+R  +               
Sbjct: 175 ESPKKKAMTLEEQMLFEEYLSNSDEYKKWYPIFIVMLWTGMRVGEVTGLQWDDLDFDNGL 234

Query: 217 ---------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                          L N       +      ++ +         M    ++TF I    
Sbjct: 235 INVNRTLVYYSKGKGLNNRYAINTPKTASGKRSIPMVQKVKDAFLMERELQKTFGIKCCD 294

Query: 262 ---------------QKMNATQFSIWFKAKATKAGV-----------------NKSAHGV 289
                          +  N    +   +       +                 + S H  
Sbjct: 295 SIDGFKDFVFLNRFGKVHNNGTLNKALRRIVRDCNLSIMDKNKSNSNDILLVPHLSNHIF 354

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R    T   +       + +  G   +      Y    +  +  I+        +
Sbjct: 355 RHTFTTRLNEQNINTKAMQSILGHSDITTTMDIYVDATEDFK--IEQMGEFEKAM 407


>gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1]
 gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22]
 gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22]
 gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1]
 gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22]
 gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
 gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22]
          Length = 396

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 14/270 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              ++ +++      L  ++R +  S  + +     +  +  +T + + S     +    
Sbjct: 106 SSFLTFFKEEVANSLLKESTRQNHLSTLELLQEFKKEILFTDLTFEFVSSFDNHLQSKGY 165

Query: 132 SAIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      ++            + K           E++ +F++   
Sbjct: 166 HLNTIAKHMKHLKRYINVAINKEYMDIQKYAFRKYKIKSIEGSHTHLAPEELYRFENLQL 225

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   RL     AF F  Y+GLR SD       ++                 +E+     
Sbjct: 226 TGRYTRLQKTKDAFLFCCYAGLRYSDFTSLTSANIVEFHQETWIIYKSVKTGIEVRLPLY 285

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATIS 297
            L     I     + ++          S   K     AG+       S H  R  +AT+ 
Sbjct: 286 LLFEGKGIEILQRYKDDLDSFFKLKDNSNINKELNLLAGLAKIDKRVSFHTARHTNATLL 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +GA    +    G K+V   + Y    D
Sbjct: 346 LYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
 gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM
           18228]
          Length = 410

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 85/264 (32%), Gaps = 22/264 (8%)

Query: 85  GSLAVNSRISF----ESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----HTPSSAI 134
              A+ +   +        + I +K G  D    ++  + +R+     K       ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKFGKDDLPLVEVNGELVRAFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           +++  ++ +   A+  E++A +P + ++    K       T +++           +   
Sbjct: 190 RYMKCLKKITNLALANEWIAKDPFIGIKF-HEKEVIREFLTMDELLTIYHKEFPLERIAV 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLLA 246
            R  F F  ++GL   D  +   +H+  +       +     T  + +  +     ++L 
Sbjct: 249 VRDVFIFAAFTGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEILR 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGAT 303
                                + + + K  A    + K  + H  R   AT      G +
Sbjct: 309 KYADYPACKKKGVLLPVPCNQKMNSYLKEIADLCLIKKNLTTHTARHSYATSVCLANGVS 368

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +   + Y +  D
Sbjct: 369 IENVAKMLGHSNIKMTQHYARVLD 392


>gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 337

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 83/305 (27%), Gaps = 38/305 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIRSG 122
           ++   +EY       +++  +   +       +       G          I  + I + 
Sbjct: 16  VQQFFTEYL--VAQRAVSPRTVACYRDALSLFLGFASHKLGKAPTAMQLADIRPELILAF 73

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           ++     RK+T  S    LT++R   K+A R++  A++          K           
Sbjct: 74  LDHLEQGRKNTVRSRNLRLTALRAFLKFAARRDVTALHDIERALAVPMKRFERPMLGFLT 133

Query: 179 MQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +  +            +  L    L  +G R S+     V  +  +  +         
Sbjct: 134 RPEMLAVLGQPGENWSSQRDHLLLAMLYNTGARVSEMIGVRVVDVILDGGACVHLHGKGR 193

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK- 279
                       + +        +L                +     + S+       + 
Sbjct: 194 KLRSIPLWKSTVVEIRAWLRLNPVLRGEAALLPNRDGQAMCRSNVTQRLSLAVTRATAEQ 253

Query: 280 ---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              A    S H +R  SA     +G   + +    G ++      Y   AD   +  K  
Sbjct: 254 PSLATKRVSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYV-EADLA-MKEKAL 311

Query: 337 RRISS 341
            R+ +
Sbjct: 312 ARLEA 316


>gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55]
 gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55]
          Length = 349

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 99/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           + + Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFNHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 339

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 76/323 (23%), Gaps = 37/323 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
                  RR+R            Y   +      + ++ +  +   +L  ++  +     
Sbjct: 16  RVAGRDSRRVR-KVFTTKAEALGYERYILKEVDDKPWLGNATQDNRSLWEIMQRWHDLHG 74

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-------------SRKHTP 130
                             I    G+    K+T     +  +              +K  P
Sbjct: 75  QQLTDP---EKRMRKLRLICDGLGNPIASKLTVNDFATFRQMRLDGEIADGMGIKQKVKP 131

Query: 131 SSAIQFLTSMRVLF---KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +       +  +F   K             LS  +            +  +   +   S
Sbjct: 132 HTVNHEHAYLSAVFSELKRLGEWTLPNPLEGLSHFKIDEMELAFLYAEEIPLVLAECDNS 191

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +     +  +  L +G R S++       + NN  +    K     TV +       +  
Sbjct: 192 KNPHLTIVVKICLSTGCRWSEAESLRGSQVVNNRITFIKTKGKKNRTVPISKALADEIPQ 251

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
           +                  +     F     + G+        H +R   A+     G  
Sbjct: 252 SRGPLF-------------SSCRKAFAQAIKRTGLTFPEGQMTHILRHTFASHFMMNGGN 298

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   + +   Y   A
Sbjct: 299 ILVLKQILGHADIKETMRYAHFA 321


>gi|76799149|ref|ZP_00781333.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|76585501|gb|EAO62075.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
          Length = 379

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 39/352 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            VTK+  + GK  YYF+ G     G+  +       T   A+  A T +  K +     +
Sbjct: 8   GVTKD-DKTGKYTYYFKAGVDLATGKPYQERRRGFQTAKEAF-EARTRALNKVQQKGGIK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +    
Sbjct: 66  HTQWTFKQFMEEVFMPNYYATTSPDLEHRRQVIFDEFIQYFGKKKPREITTYDVINYRNG 125

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQF 182
              +++ S A   +T +  + K A +   +      S   P     + I  WTK++ Q+ 
Sbjct: 126 LLERYSNSYARNKMTLLNQVLKTAKKYGLIFHEIPTSNISPIPIIKKHIDFWTKDEFQKV 185

Query: 183 KSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTG 230
                + S         F    ++G+R +++     + +          +      ++  
Sbjct: 186 IQCLDKKSYFEHFVYTLFWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYINRENW 245

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKA 275
                   +   + + +            ++Q                            
Sbjct: 246 VRRNKLKTESSRRTIGLDDNTLNVLKEWKERQAKVDKIPFILSLDGNPYRKRSIRDQILK 305

Query: 276 KATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
            + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 306 YSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|303242126|ref|ZP_07328616.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590313|gb|EFL60071.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 423

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/412 (12%), Positives = 113/412 (27%), Gaps = 82/412 (19%)

Query: 7   LPPFVTKERTRHGKIIYYF---RKGHGRRIRLPYP-----HESTFIPAYMSA-LTGSTPK 57
           +P ++      +GK  +       G G+R +                 Y    L     +
Sbjct: 1   MPGYM--RDLGNGKFQFEVSKGHTGGGKRNKAYKTIQAKGKTPEAQQKYAEKQLALFVAE 58

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
            E  N       T      E++KS     LA  +   + +     II + G +   +I  
Sbjct: 59  VESGNFQAPTKYTFAQYSEEWKKSKE-RELAPLTFYRYCNLLRLHIIPEIGGYKLEEINA 117

Query: 117 KHIRSGVESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             + +   + +                     +  +       +  + + A R+  +  N
Sbjct: 118 LLLDTAYNNMRELKQRKYRKKDGTEKIKDYSLSEQTIKHIHRLIGTILQTAFRKGLIKEN 177

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P    + P  K +  + + +E +    +       Q + A    L SG R  +       
Sbjct: 178 PITRTDVPHVKKKEPKYYDQEQISSLIAALEDTDIQFKTAVHVTLASGCRLGELLGLEWS 237

Query: 216 HLQNNIFSIKTQK-----------------TGTIITVELPDGFMKLLAM----------- 247
            +  +  +I  ++                   +   V +P   M +++            
Sbjct: 238 DIDYDKCTIDIRQAGQYIPGQGVFTKDPKNETSKRIVSMPRPVMDMISHLEYEKKVSKVK 297

Query: 248 -----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
                                    F   D   M   + S  +KA   K+ + K + HG+
Sbjct: 298 LGNKWQGGNIKDKAEREYDGRPNRLFTRADGSPMYPNRLSKQWKAFIDKSDLPKITFHGL 357

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI-RLGIKNSRRI 339
           R  SA+     G     +    G  + +     Y     +       +  ++
Sbjct: 358 RHTSASYLISCGQDVVSVAKRLGHSSSNTTLSIYAHAFKKRDEEAAVHMDKL 409


>gi|238898767|ref|YP_002924449.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|211906286|gb|ACJ11661.1| integrase [Candidatus Hamiltonella defensa]
 gi|211906293|gb|ACJ11665.1| integrase [Candidatus Hamiltonella defensa]
 gi|211997715|gb|ACJ14803.1| integrase [Candidatus Hamiltonella defensa]
 gi|211997718|gb|ACJ14805.1| integrase [Candidatus Hamiltonella defensa]
 gi|229466527|gb|ACQ68301.1| APSE-2 prophage; integrase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 381

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 118/380 (31%), Gaps = 60/380 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R+G     F   +G+RIR  L    +      +    + +  + +    P+K   T +
Sbjct: 4   KMRYGIWHCDFVTSNGQRIRQSLGTADKKEAQELHDKLKSNAWRENKLGEIPQK---TFE 60

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
                + K          S    ++     +          IT   +   +   K+    
Sbjct: 61  EACVRWIKEKQHK----RSLDDDKTKIAFFLLHFSKKSLSNITEDEVTHVISEMKNRRHQ 116

Query: 129 -------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                                    +P++  Q+L+ MR L + A  +      P  +++ 
Sbjct: 117 QRWVSIKRASLKTGYQVPDFNDKAVSPATRSQYLSFMRGLMRIAANEWGWLAKPL-NLKV 175

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K   + +R  ++E+  +  S  ++  +P     F L +GLR S+      Q +      
Sbjct: 176 RKPNDKRVRWLSREEANRLISVVNQNFRP--IVIFALATGLRRSNIIHLEWQQIDMERKV 233

Query: 224 IKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------- 268
                        I V L +   ++L         +     K                  
Sbjct: 234 AWIHPEQAKAGKAIGVALNETACRVLREQLGRHSRWVFVRKKTVQGREGEKQDLVSKFRV 293

Query: 269 -FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +  +K    KAG+     H +R   A+    +G     L    GW++++    Y   +
Sbjct: 294 DDNRAWKTGLKKAGIENFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLS 353

Query: 327 DRIRLGIKNSRRISSVVDSD 346
                  +++++I   + +D
Sbjct: 354 PSH--LTEHAKKIDEALAND 371


>gi|160872703|ref|ZP_02062835.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
 gi|159121502|gb|EDP46840.1| site-specific recombinase, phage integrase family [Rickettsiella
           grylli]
          Length = 336

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 105/334 (31%), Gaps = 21/334 (6%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R+      F     R  +                L     +   +N   K     +  +
Sbjct: 5   KRNNIWWIRFSHNGKRIQKSTETTNKAAAQELHDRLKSDLWRLGKLN--EKPEKLWQEAV 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTPS 131
            ++         +  S      +   +     +    +I    I    ++    +K + +
Sbjct: 63  VKWLDVC--KRKSKRSLEEAGFHLMWVEPYLKNKKLIEIDIDLIDEIIQAKRSEKKVSNA 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + L  +R +   A ++ +V   P +S      + E  R  TK++ ++          
Sbjct: 121 TINRLLEVIRAILNNAFKKGWVEKIPSIS---LFDEIERDRWLTKDEAERLLKELPPHLS 177

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAM 247
              AF   L +GLR ++      +++              KT   I V L    + ++  
Sbjct: 178 DMAAF--SLLTGLRKANVTGLKWRNVDLVRRHAFVSASQSKTNKAIPVPLSTEAVAIIRK 235

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                  F    + + M     +  ++    +AG+ +   H +R   A+     G + +E
Sbjct: 236 QVGKHIEFVFTYEGKPM-KQCCTRSWRKALKRAGIEDFRWHDLRHTWASWHVQNGTSLYE 294

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           L    GW + +  + Y     +     + + R++
Sbjct: 295 LQRLGGWSSYNTVQRYAHLNSQQ--LQEAAERVA 326


>gi|307720074|ref|YP_003891214.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
 gi|306978167|gb|ADN08202.1| integrase family protein [Sulfurimonas autotrophica DSM 16294]
          Length = 389

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 106/325 (32%), Gaps = 27/325 (8%)

Query: 24  YFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--R 79
           YFR    +                A  +         E     +K   TL     EY   
Sbjct: 54  YFRNKQKKETVSYNNITGLQAIKKAIATRAELKVEIEETGIIKKKDFKTLSEYWDEYVFY 113

Query: 80  KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE----------SRKH 128
           KS+ W   + +++++  +++   I  + G+ ++ K+TT+ ++  V            + +
Sbjct: 114 KSSIW---SPDTKVTNTTFYDKWIREQIGEINFEKVTTRDLQDIVNLILRSSNPKTKKPY 170

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +A      +R L+ + ++     INP +++E PK         + ++ ++     + 
Sbjct: 171 ATRTAQSVKQQIRALYNYFIKSNITKINPAINIEIPKFDNTIDFELSDDERKKLFEAINN 230

Query: 189 GSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               +       LYSG R ++      +++  +  +             L      +L  
Sbjct: 231 YELAKFKGVMLFLYSGRRLNEVLTLDWRNIHFHKKTYTIDSIYAKNRRTLEFPIPPVLED 290

Query: 248 TPIGKETFF-------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
             +               +  + ++   F   +K    +  ++K   H  R        +
Sbjct: 291 FLLSYHPKKTGLIFVAQKDPNKPLSQETFRRHWKIVIDRLDIDKMRIHDTRHLLGNTMIN 350

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
            G +   +  T G  +V     Y K
Sbjct: 351 KGFSLEAVGKTMGHSSVHVTTRYAK 375


>gi|227500239|ref|ZP_03930308.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
 gi|227217629|gb|EEI82938.1| possible phage integrase [Anaerococcus tetradius ATCC 35098]
          Length = 353

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 107/354 (30%), Gaps = 31/354 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            + GK  Y F+   G+++      +S+    Y           + +          +  +
Sbjct: 7   KKDGKTYYKFQIRLGKKVTTRSGFKSSNAAIY-KYTQMMKDYEDEVQGNILYQKAYEKWL 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             Y  +    +L+  + + +    + I+   G    + IT         + K   S    
Sbjct: 66  RLYETTVEESTLS--TTVGYFK--NHILPHFGQTKIQDITINKCEDFALAYKD-YSKGKS 120

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPR 193
                + + ++A +   +  NP      P+             +++ Q  +++      +
Sbjct: 121 MYYYAKSVMEYAKKHYNLKENPFEKASLPRFYEHEEECKFLEPKEVSQLINYFEHNIFRK 180

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI----------FSIKTQKTGTIITVELPDGFMK 243
             F  L Y GLR  ++     + +               + + Q        +     + 
Sbjct: 181 TLFRVLCYVGLRRGEALALTWEDIDFKTKTLTVNKAIGINKQNQVYLKGPKNKASYRTLD 240

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFK---------AKATKAGVNK-SAHGVRKFS 293
           L + T +  +   +++    +  +    + +             K G+ K + H +R   
Sbjct: 241 LDSKTLLSLKELKLSSKSDLVFPSPIGGYLRLSTPNEKLQETLEKLGIKKITLHDLRHTH 300

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
           A++   +G +   + A  G    +     Y     + +   +        ++ +
Sbjct: 301 ASLLFASGRSVKYVQARLGHSRAETTMNIYVHVTQKEQ--DQAIEDFEKYMEKN 352


>gi|21910890|ref|NP_665158.1| putative phage integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876436|ref|NP_795605.1| putative phage integrase [Streptococcus pyogenes phage 315.5]
 gi|28895419|ref|NP_801769.1| integrase [Streptococcus pyogenes SSI-1]
 gi|56808215|ref|ZP_00365990.1| COG0582: Integrase [Streptococcus pyogenes M49 591]
 gi|21905096|gb|AAM79961.1| putative phage integrase - phage-associated [Streptococcus pyogenes
           phage 315.5]
 gi|28810665|dbj|BAC63602.1| putative integrase [Streptococcus pyogenes SSI-1]
          Length = 388

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 98/374 (26%), Gaps = 53/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  Y+ R+G   +G +         T   A    L     K E 
Sbjct: 5   KTKYP-NIFWYITLKGK-RYHIRRGYYLNGEKKEATESGIKTIQEA-RLLLAEIERKIEN 61

Query: 61  INSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118
                 K  T+      Y  +    G  + ++ +   + F   I  K G+     I    
Sbjct: 62  NEFAYNKNLTVDEYWDIYVDNRLKAGVWSPDTYVERTNIFKNHISPKFGNKKMNAINRIE 121

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRP 173
             + + +    ++ S+         ++   AV+ + +  N    ++      +     R 
Sbjct: 122 YENYINNLLNTNSRSTVKHIYDVFSIMLNHAVKNKMLDDNIIKFIDIGDSEIKPINKRRS 181

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---- 229
             +       +                  GLR S+     + ++  N       K     
Sbjct: 182 MQEFKAWDKVARKMLDDYDYAMVRITYL-GLRRSEVAGIKLGNITFNDKDCAVVKIDESR 240

Query: 230 -------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------------- 262
                         +   V L     +LL           + ND+               
Sbjct: 241 TRGRKDGGGLKTAYSERYVYLDFETSQLLKKAIDTSIKIAVCNDRILNKADFLFLGDDEK 300

Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    + +      FK       V+ + H +R F AT    AG     + A  G  
Sbjct: 301 VKPSFVGKPIGSHYIYCLFKKINKNCDVHFTPHMMRHFFATQGQIAGVPIEHMAAALGHS 360

Query: 315 TVDQAETYTKGADR 328
                  YT   D 
Sbjct: 361 NNYMTSQYTHIKDE 374


>gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606]
 gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606]
          Length = 346

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 85/305 (27%), Gaps = 33/305 (10%)

Query: 68  PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119
           PTTL  L +   +S       S A  +  +       +     D     I  + I     
Sbjct: 44  PTTLLELSNAELQSVKEGVGKSKAEGTYTNLCYANRMLCEFIKDLGSTDIEIRSITEELF 103

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              R  ++ +    SS   +L  +  L  +    + +           ++  + IR  +K
Sbjct: 104 EEYRFFLKKKGLKGSSINNYLCWLSRLM-FRAVSQRIIRYNPFEHAEYEKVEKTIRFLSK 162

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             +    +     S     R  F F  ++GL  +D       H+++        +     
Sbjct: 163 SYVANLMAMKMCDSDAELARRMFIFSCFTGLAIADMEHLTSGHIKSAADGQMYIRKERQK 222

Query: 234 TVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T                     ++ +       +       +   + +  +         
Sbjct: 223 TKVESIVPLHPIAKTIIAQQRQLQAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKA 282

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            G+ +    H  R    T+   AG     +    G  ++   + Y +  D      ++  
Sbjct: 283 CGIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCK--ISEDMD 340

Query: 338 RISSV 342
           R+ + 
Sbjct: 341 RLIAK 345


>gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
 gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1]
          Length = 298

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 77/263 (29%), Gaps = 4/263 (1%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               +  P + +  ++ + +         ++         ++ R   +     IT + + 
Sbjct: 24  KIKRKLLPNSWETYVTHWLEYLEASGYTEDTIRCRYYKISRLARLL-NQPPEDITGQQLV 82

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +     +   + +++R  + + + +E + +NP + + + +++     P     ++
Sbjct: 83  ELFAHQDWKRETRKGYSSTIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIR 142

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      +           GLR S+  +     +       +    G          
Sbjct: 143 GALARVRGNKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPI 202

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
              L  +        F       + A+  +          G   S H +R    T + ++
Sbjct: 203 APDLAQIIANKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYSTHSLRHRYDTKAYES 259

Query: 301 GATAHELMATYGWKTVDQAETYT 323
                 +    G  +V+  + Y 
Sbjct: 260 THDLLLVSKLLGHASVETTQIYI 282


>gi|328883029|emb|CCA56268.1| hypothetical protein SVEN_2982 [Streptomyces venezuelae ATCC 10712]
          Length = 414

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 97/390 (24%), Gaps = 62/390 (15%)

Query: 8   PPFVTKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           P  V  +R   G +    +    G      +P +   +       T +   R     PR 
Sbjct: 20  PRRVKSDRYGTGMRYRARYVGPDGTEKSKSFPDKQKRLAELWLIETAADMARGQYVDPRA 79

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
              T +    ++  +       VNSR + E           G          HIR+ +  
Sbjct: 80  GRVTFRQFAEKWVATHTTE---VNSREAAERRLRLHAFPYIGTRPLASFQPGHIRTWLGE 136

Query: 126 RKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            + +  +A        ++   F  A+    ++ NPC +      K    R       Q F
Sbjct: 137 LESSVPAASHRRIVFGTVSAAFSAALDDGLISKNPCKAKSIQIPKPSHTRVVPWTAKQVF 196

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
               +     R   +     GLR  +        + ++   +  +               
Sbjct: 197 GVRAALPEHLRATVDAAGGCGLRQGEVFGLSEDEVDHDGGWLSVEHQLKRIRGKFVFALP 256

Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----------------- 270
                  V LP      L           I    +  +    +                 
Sbjct: 257 KGGKVRDVPLPPSVAAALKAHSEKYPPVRITLPWRTPDGPLVTKSLIFTGSAGGHIRVSH 316

Query: 271 ---IWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGW 313
                +K      G+                  H +R F A++  DAG     L    G 
Sbjct: 317 FNDFMWKPALAAVGIIPEPEEGERYASAPEHGMHALRHFYASVLLDAGENIRALSQYLGH 376

Query: 314 KTVD-QAETYTK----GADRIRLGIKNSRR 338
                   TYT        R R  ++   R
Sbjct: 377 ADPGFTLRTYTHLMPSSEGRTRNAVEALYR 406


>gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 369

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 90/328 (27%), Gaps = 30/328 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 30  RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 87

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 88  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 144

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                     +P +     + +  +F    R  E+   NP  ++ +     + +   T E
Sbjct: 145 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 204

Query: 178 DMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            + +             L  +  L +G R  ++       +     +    K     ++ 
Sbjct: 205 QIVELLDDCKRQDPILALVVKICLSTGARWREAINLTRSQVTKYRITFVRTKGKKNRSIP 264

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 265 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 316

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
              +G     L    G   +     Y  
Sbjct: 317 FMMSGGNILALQKILGHHDIKMTMRYAH 344


>gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101]
 gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101]
          Length = 350

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 85/330 (25%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R      
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFTAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|228474636|ref|ZP_04059367.1| integrase [Staphylococcus hominis SK119]
 gi|228271299|gb|EEK12667.1| integrase [Staphylococcus hominis SK119]
          Length = 404

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 109/401 (27%), Gaps = 73/401 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIDEKLNNKTP 64

Query: 64  PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++         ++  +       I  +   D    K+  + I++
Sbjct: 65  TTLKSLTFHAACDEWFENYKLTSGSKQSTIRAKTYRLAHIKERINEDILVDKMNAQVIQN 124

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +            +    ++ ++ + K+A ++  ++    +      +K         +
Sbjct: 125 YINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIDNVSLPKKAVTREEIKAK 184

Query: 178 DMQQFKSFW---------------SEGSQPRLAFEFLLYS------GLRCSDSCRAGVQH 216
                +                  ++G   R        +      GLR  +      ++
Sbjct: 185 RENYLEMNEVHKLIDELNHKASTSNKGYIKRSYMMTAYITEFQVLNGLRIGELLALQPEN 244

Query: 217 LQNNI-------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +                       F   T+   +  T+ +     ++L    +  +    
Sbjct: 245 IDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCEILRKVMLENKKSTK 304

Query: 258 NNDKQ-------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            +                 M  +  +   K  A   G+ K  S H +R    ++ +  G 
Sbjct: 305 WDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHTMRHSHISLLSQLGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
           +   +M   G K      + Y+   ++  +      ++ ++
Sbjct: 365 SLRAIMDRVGHKDYKTTLQIYSHVTEQ--MDKDMMSKLENI 403


>gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 259

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 85/252 (33%), Gaps = 24/252 (9%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKH 128
           I ++  +     +LA N+  ++      ++             +    + + +      +
Sbjct: 8   IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S+ + L++MR  F+   R++Y   +P   +  PK      +  ++  +++       
Sbjct: 68  KATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMK 243
                 + +   E L  +GLR S+     +  +      ++          V L +  + 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 244 LLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290
            L         +          F +   Q+M    F    K  A  AG++    S H +R
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 291 KFSATISADAGA 302
              AT   + GA
Sbjct: 248 HAFATHLLNHGA 259


>gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1]
 gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1]
          Length = 379

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 6   KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 63

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 64  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 121

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 122 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFNFKLSEIIENDTKEKVALTEEQEQAL 181

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 182 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGYY 241

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +       L      K+  F+N       A  ++
Sbjct: 242 IETPKTKSGTRQVPLSRETIQAFQRVIRKRTKGKLIEIDGYKDFLFVNPKGNPKVAIDYN 301

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
             F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 302 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 361

Query: 322 YTKGA 326
           Y   +
Sbjct: 362 YAHAS 366


>gi|125624671|ref|YP_001033154.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493479|emb|CAL98456.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071463|gb|ADJ60863.1| IntTn5276 protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 379

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 105/357 (29%), Gaps = 49/357 (13%)

Query: 18  HGKIIY---YF--RKGHGRRIRLPYPHESTFIP-------AYMSALTGSTPKREYINSPR 65
            GK  Y   YF  ++   R++ +    +S           A     +   P    +    
Sbjct: 8   SGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANELQEQI 67

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T++ +  E+        +   S ++ +      I K   +   ++TT  I+S +  
Sbjct: 68  AQNKTVQEIYEEWVVIRK-QDVKPGSFVAEQISLRGFIEKFSKYKVSEVTTADIQSYLME 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED 178
                S+       +R+LF++A    Y+  NP   V  PK +           +  +KE+
Sbjct: 127 LDIANSTRKNRRIYIRILFRYAENIGYIDSNPADKVVLPKVRLEIETLERANEKFLSKEE 186

Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           M     F     +  +  LA EF+  +G R  +      Q +      ++   T      
Sbjct: 187 MSSVLIFCKSYKKDIRYTLAMEFIFLTGCRFGEFASIRYQDIDFKNKLLRIDHTLEYRVA 246

Query: 236 EL----------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +                           +       +  +  F+N          F  + 
Sbjct: 247 KYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFI 306

Query: 274 KAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                K          H +R    ++  + G     +M   G +        Y+  +
Sbjct: 307 CDNCQKVLGNERKYGIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|145223514|ref|YP_001134192.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216000|gb|ABP45404.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 93/324 (28%), Gaps = 25/324 (7%)

Query: 15  RTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           R   G + +  +    GR     +  +             +        +PR    T++ 
Sbjct: 32  RDGKGLRWLARYVDERGREHSKSFARKPDAQQ--WLDGQTAAVVTGSHVAPRTAQMTVEQ 89

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130
               +           ++     ++   I+ + GD     +    +++ V   K     P
Sbjct: 90  WCDTWIGGYAVNR--ESTVRQARTHIKHIVAEFGDQPLSALRPSQVKAWVAGLKKADVAP 147

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S      + +  +   AV    +A NPC     P   T+     T E +        +  
Sbjct: 148 SYVYALHSRLSQICGDAVHDGVLARNPCSRRTAPPMGTQKPYVATTEQVWALHDAMPD-- 205

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTGTIITVELPDGFM 242
             R+A     + GLR ++     V  +            +  K  KT            +
Sbjct: 206 HLRVAVLLGAFVGLRVAEVAALRVSDVDFIRGVVHPVQQWPDKPLKTDGSAQPVPIPNDL 265

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-----GVN--KSAHGVRKFSAT 295
            LL    + +    +   +     T      + +   A     G+    S H +R + A+
Sbjct: 266 ALLLSASVKRYPSPMMVTRGVAGETAPPWVIEREVRAARSSIDGLPEEFSFHDLRHYLAS 325

Query: 296 ISADAGATAHELMATYGWKTVDQA 319
           +   +GA    + A     +    
Sbjct: 326 LLIASGADIKTVQARMRHGSARTT 349


>gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 372

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E   + P           +
Sbjct: 100 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R + +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 220 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 277

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     +           K     AG+ K  + H  R    ++  + G     + A
Sbjct: 278 LGERHEGLIFEGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 337

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 338 YMGHKNITTTQIYSKMAAQQ 357


>gi|238765556|ref|ZP_04626468.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238696219|gb|EEP89024.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 355

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 110/338 (32%), Gaps = 23/338 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-- 61
              LPP +     R+     Y     G+   L          A  + L         +  
Sbjct: 9   RRDLPPNLY---VRNNGYYSYRDPRTGKEYGLGRIKRDAVNQAIEANLQLMDNVSARLIE 65

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                        +  Y K      L   +   +      +     +     ITTK I  
Sbjct: 66  RISSDSAMLFHDWLDHYAKIIDARGLKPKTLKEYRCKLRTLHSTIRNVPIDSITTKDIAG 125

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +         + A Q    +  +F+ A+ + Y++ NP  + + P+ + +  R    +  
Sbjct: 126 VLTPYIVAGKAAMAKQTRMLLLDIFREAIAEGYISSNPVDATKNPRSEIKRSRLSLDDYK 185

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238
           + FKS         L+ E  L +G R SD  +     +++ +  ++ QK+G  + +++  
Sbjct: 186 EIFKSSLKLQPWIPLSMEIALLTGQRVSDISKMKWSDIRDGMLWVEQQKSGAKLALDVNL 245

Query: 239 ------DGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK----- 284
                   F + L               +++K +++ T  S  F      +G++      
Sbjct: 246 SLNALGISFNETLIRCKSQFGGCDNLIASHNKLQLSTTAISRGFARARDLSGLSWDKAPP 305

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           S H +R  SA +  +   +   +    G K+      Y
Sbjct: 306 SFHELRSLSARLYTEEKGS-EFVQRLLGHKSSIMTAKY 342


>gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica]
 gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica]
 gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica]
          Length = 340

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 32/289 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY------------RKITTK 117
           TL+  +  Y +       +  +  ++  +    +                          
Sbjct: 11  TLRQQLEAYLEIQTASGHSTRTPETYREWLTPFVDWCEMRAVYHAPQVSLPLLESWQRYL 70

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----R 172
                 + + +  +S +Q L  +R  F+W +++ ++  NP   +  PK +          
Sbjct: 71  RRYRKADGQHYGNNSQLQRLRCLRGWFRWLLQRHHILYNPADMLILPKEEQRLPAQVLSD 130

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTG 230
             T++ +    +    G + R   E L  +G+R ++     +  +  +     ++  K G
Sbjct: 131 VETEQVLNSLDTQTPLGLRNRAVLEALWSTGIRRTELINLRLGDIDRHRGVVVVRQGKNG 190

Query: 231 TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQF-SIWFKAKATK 279
               V + +  +  L                    FI      ++      +       +
Sbjct: 191 HDRVVPIGERALAWLERYLADVRPQLAYRYDSGYVFITVRGNPLSRNTLTQMAGHTIREE 250

Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A ++K  S H  R   AT   + GA    + A  G K ++  + YT+ A
Sbjct: 251 AKLDKAGSCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVA 299


>gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
 gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787]
          Length = 345

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 41/304 (13%)

Query: 63  SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTK 117
             +K P+     +  Y  +       L+ N+  S+++ F  +I+      +    +IT  
Sbjct: 2   RKQKTPSIFMKYLEYYVNTYMPEARGLSKNTINSYKTTFTLLIKYMYSVKNTKADEITFD 61

Query: 118 HI---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +               RK + ++  Q L ++    ++A   ++ A +   S        
Sbjct: 62  CLDVNTLSDFMSWLENERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVLRIPSK 121

Query: 169 EGIRPWTKEDMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +  +                        G +  +   F+  +G R  + C   V+ +   
Sbjct: 122 KAPKKRRVGFTTDEVKILLALPDQKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFR 181

Query: 221 IFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFS 270
                     K      + +PD    +L      +          F +   + M  +   
Sbjct: 182 STGTTIDIVGKGSKARRIRIPDPCASMLRKYIRHRRIETEPDRHIFSSQTHEHMTISCVE 241

Query: 271 IWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +K     A             S H +R  +     +AG     + A  G  +V   + 
Sbjct: 242 EIYKKYIKLAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQI 301

Query: 322 YTKG 325
           YT+ 
Sbjct: 302 YTES 305


>gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492]
 gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 396

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 21/303 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              +  +      S    + + S  +  T+    I  +R+     +L  +++ +  S   
Sbjct: 77  KKELELWQQGRRISLELLKDVLSTSENKTSF---IPFFRQEIANSTLKESTKRNHLSTLS 133

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV----RQEYVAIN 156
            + +   D  +  +T + I S     +            M+ L +       +       
Sbjct: 134 LLQQFKKDVTFSDLTFEFISSFEYFLQSRGYHTNTIAKHMKHLKRHINVAINKDYMEIQK 193

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCR 211
                 + K         + E++++ +     G   +L     AF F  Y+G+R SD   
Sbjct: 194 YAFRKYKIKTIENKHTHLSPEELEKLEKLSLAGRYTKLQKTLDAFLFCCYAGMRYSDFIS 253

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNA 266
               ++               I           L           K    + +     + 
Sbjct: 254 LSPDNIVEIRQET--WLIYKSIKTSTEVRLPLYLLFEGKGLVILDKYRDDLQSFFHLRDN 311

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +      +  AG+    S H  R  +AT+    G     +    G K+V   + YT 
Sbjct: 312 SNVNKDLIVISRLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 371

Query: 325 GAD 327
             D
Sbjct: 372 VMD 374


>gi|84683725|ref|ZP_01011628.1| site-specific recombinase, phage integrase family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84668468|gb|EAQ14935.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 392

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 112/354 (31%), Gaps = 32/354 (9%)

Query: 10  FVTKERTRHGKIIYY--FR-KGHGRRIRLPYPHESTFIPAYMSALTGST-----PKREYI 61
            +    +  G  ++Y   R  G  RRI++      +   A   A+  +         +  
Sbjct: 36  GLHVRVSTTGAKVFYTLVRPNGSRRRIKIGPYPVVSLADARRRAMEIARDVELGEFEKTP 95

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHI 119
             P     TL  +I ++ +         N++      S   +      D    +I  + +
Sbjct: 96  EVPEASADTLGEMIPKFIELHA----KPNTKDWKRTESVLHKF-DGLKDRPIDQIRRQDV 150

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
              ++      TP+ A + L++++ L  W V +  +  +P   +  P R+ +  R  +  
Sbjct: 151 SKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIETSPVALLRPPTREVQRDRVLSDA 210

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTI 232
           +++           P   F  LL  SG R S+        L              K   +
Sbjct: 211 EIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGMRWSELNLDEGIWELPANRVKNARL 270

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGV 289
             V LP   + +L       ++ F+     +   + F    +   T       +   H  
Sbjct: 271 HIVPLPVQAVDILRGLHRFLDSDFVFTTTGRSAISGFGRLKERVDTALPEGTPDWRFHDF 330

Query: 290 RKFSATISADAGATAHELMATYGWKT------VDQAETYTKGADRIRLGIKNSR 337
           R+ ++T  A  G   H + A    K+            YT   +  R  +    
Sbjct: 331 RRTASTGMAKLGVMPHVIDAVTNHKSGVVSGVGATYNRYT-YFNEKREALAQWA 383


>gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 414

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 97/380 (25%), Gaps = 53/380 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+   R R G+   Y   G   ++      +         A        +      ++  
Sbjct: 42  FLVAYRLRDGRKNRYV-IGRTPQLTPAQARDEAKKVLGDVARGIDPNDDKRQQRREERKP 100

Query: 70  TLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
           TL+  I E+    +      A  +                D     +T          R 
Sbjct: 101 TLEVFIDEHYAPWARAHLGTADKTLARMRVA---FKEHF-DKRLDSLTAWQFDKWKSERL 156

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----------------- 167
                P+S  + L S+R     AV  E +  +P   V++ K                   
Sbjct: 157 KSGLKPTSVNRELASLRSALTKAVEWELIPEHPLRKVKQAKVDEDHRVRFLSDAEETRLR 216

Query: 168 -------------TEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCR 211
                              W ++   +     +EG+     R      + +GLR  +  +
Sbjct: 217 EVLDERDGNARAARVRHNEWRRQRGHEALPLIAEGTFIDHIRPMILVTINTGLRRGELFK 276

Query: 212 AGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                +      +K +    K+G    + L D    +L                   +  
Sbjct: 277 LKRSDIDMEKRMLKVRAAAAKSGKSRFIPLNDEAATMLTRWMDQHPAEDEELVFPGKDGA 336

Query: 268 QFSI---WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +     + +      + +   H +R   A+    AG   + +    G   +     Y 
Sbjct: 337 PLTNVDSAWGSIVRAVKLKDFHWHDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYA 396

Query: 324 KGADRIRLGIKNSRRISSVV 343
             A   +       ++   V
Sbjct: 397 HLAPEHKAM--AVAKLIRSV 414


>gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 349

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 97/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA    + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPPYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 308

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 86/304 (28%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVE 124
              T+K +   +++      +  ++  ++     + I+   GD  +  +   +       
Sbjct: 3   AKKTIKEITIMWKEDKR-KYVKSSTYSAYALILENHILPTFGDKYELLENEVQEFVLQKL 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            ++    S    L  ++++ K+  +   ++         P ++ + +      + +    
Sbjct: 62  QQRLRAKSVKDILIVLKMVMKFGAKLGILSYQDWCIKFPPPQENKQLNVLNIANHKAILQ 121

Query: 185 FWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           + S     R L     L +G+R  + C      +      I  +KT   I +   +    
Sbjct: 122 YISNHFTFRNLGIYICLTTGIRIGEICALTWDDIDIINGVICIRKTIERIYILDGEKIHT 181

Query: 244 LLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKAKA 277
            + +     +    +                                    +  ++K   
Sbjct: 182 EIIIGTPKTQNSIRDIPMNKELLKMLRPLKKIVNGKFYVLTNEEKPTEPRTYRNYYKRMM 241

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
            +  +     HG+R   AT   ++      +    G   +      Y     ++ +  I 
Sbjct: 242 EQLNIPPLKFHGLRHSFATRCIESNCDYKTVSVILGHSDITTTLNLYVHPNMEQKKRCID 301

Query: 335 NSRR 338
              +
Sbjct: 302 KVFK 305


>gi|13487802|ref|NP_108680.1| integrase [Lactococcus phage Tuc2009]
 gi|508613|gb|AAA32608.1| integrase [Bacteriophage Tuc2009]
          Length = 374

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/353 (11%), Positives = 98/353 (27%), Gaps = 44/353 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
            + R     Y   +      RL     ST   A   A+   +  K+ +I  P K+  +  
Sbjct: 4   YQKRGKTWQYSISRTKQGLPRLTKGGFSTKSDAQAEAMDIESKLKKGFIVDPIKQEIS-- 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
               ++ +     ++   +   +E     +     +    +IT    +  +     T + 
Sbjct: 62  EYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAK 121

Query: 133 AIQ--FLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSF 185
           A    F T +R   +  + +  +  +             K + +    + +         
Sbjct: 122 ASTKGFHTRVRASIQPLIEEGRLQKDFTTRAVVKGNGNDKAEQDKFVNFDEYKQLVDYFR 181

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
                         +   + +R S++       +  N  +IK ++T              
Sbjct: 182 NRLNPNYSSPTMLFIISITSMRASEAFGLVWDDIDFNNNTIKCRRTWNYRNKVGGFKKPK 241

Query: 235 -------VELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFK 274
                  + + D  M+LL                    +    +  ++ +  +       
Sbjct: 242 TDAGIRDIVIDDESMQLLKDFREQQKTLFESLGIKPIHDFVCYHPYRKIITLSALQNTLD 301

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               K  +    + HG+R   A++    G     +    G  +V    +TY  
Sbjct: 302 HALKKLNISTPLTVHGLRHTHASVLLYHGVDIMTVSKRLGHASVAITQQTYIH 354


>gi|497773|gb|AAA72427.1| integrase [Lactococcus lactis]
          Length = 379

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 104/357 (29%), Gaps = 49/357 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-------- 69
            GK  Y+ +    +R +      +    + ++           I   +K PT        
Sbjct: 8   SGKYRYFEKYFDEKRNKWRQVTVTLKSKSRVAQSEAKNRLARKIEQSKKVPTANEIQEQI 67

Query: 70  ----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T++ +  E+        +   S ++ +      I K   +   ++TT  I+S +  
Sbjct: 68  VQNKTVQEIYEEWVVIRK-QDVKPASFVAEQISLKGFIEKFSKYKVSEVTTADIQSYLME 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED 178
                S+       +R+LFK+A    Y+  NP   V  PK +           +  +KE+
Sbjct: 127 LDIANSTRKNRRIYIRILFKYAENIGYIDSNPADKVVLPKVRLEIETLERANEKFLSKEE 186

Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           M     F     +  +  LA EF+  +G R  +      Q +      ++   T      
Sbjct: 187 MSSVLIFCKSYKKNIRYTLAMEFIFLTGCRFGEFASIRYQDVDFKNRLLRIDHTLEYRVA 246

Query: 236 EL----------------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           +                           +       +  +  F+N          F  + 
Sbjct: 247 KYDDRVIQTPKTVGSIRTISLSNRCLEIIDYFQKNCLDDKFVFVNAVGGIFRQPVFYKFI 306

Query: 274 KAKATKA---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326
                K          H +R    ++  + G     +M   G +        Y+  +
Sbjct: 307 CDNCQKVLGNERKYGIHLLRHSHVSLLVELGVPIKAIMERVGHRDESITLRIYSHIS 363


>gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 430

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 90/282 (31%), Gaps = 14/282 (4%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            ++ +        +        + +        +++ +  S    +       D++ +T 
Sbjct: 118 LKDAVKKKSAVNISFSTFA---KSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTY 174

Query: 117 KHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIR 172
             +R   +  +   ++     + +  +R L   A+ Q Y+  +     +   K++     
Sbjct: 175 TFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHE 234

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             T +++++ ++   E    R    AF F  Y+GLR SD C+   ++             
Sbjct: 235 FLTPDELKKLETVKVEEESMRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFK 294

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSA- 286
                VE+      L     +G    + +             +   +  A   G+ K   
Sbjct: 295 SVKTGVEIRLPLHLLFESRALGILDRYPDIGSFAALPCNSEVNKQLRKLAELCGIKKRIT 354

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H  R   AT+    G     +    G  +V   + Y++   
Sbjct: 355 YHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|257438952|ref|ZP_05614707.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198630|gb|EEU96914.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 384

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 92/375 (24%), Gaps = 55/375 (14%)

Query: 1   MTPSLRLPPFVTKE----RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M+   +       +    +  +G   Y +   H +R  +     +               
Sbjct: 1   MSEKRKDSKGRVLKDGESQRANGTYDYRYTDIHKKRRCIYAKSLTELRKKEEELWRDLAD 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKIT 115
             +Y         T+  L+  Y        L  NS  S+ +   +I     G    + + 
Sbjct: 61  GIDYA----AGEMTVADLVDRYMNLK--RGLKPNSLRSYNTAVKRIHADPFGQKAIKTVK 114

Query: 116 TKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEG 170
               +        +           + +R  F+ AV  + +  NP      +   +    
Sbjct: 115 LSDAKGWFVFLHDSGFKQNTIGILQSVVRPAFEMAVEDDIIRKNPFKFKLSDVVPKDAYV 174

Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
               T+E  +++  F  + G         L+ +GLR S+        +      I  ++ 
Sbjct: 175 RNALTREQQEKYLQFVQDYGGNYYDDIVILMGTGLRVSELYGLTRADIDFERHCIHVRRQ 234

Query: 230 GTI-----------------ITVELPDGFMKLLA--------------------MTPIGK 252
                                 V + D     L                        + K
Sbjct: 235 LCRTAEKPYFVTPPKTKSGIRNVPMTDTVCAALRRVVKARASTKVEALVDGCSGFLFLDK 294

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                     +         F+   +K     + H +R    T    AG     L    G
Sbjct: 295 SGMPKVAMHLENYMRGVQGKFEKAYSKPVPRITPHVLRHTFCTNVQQAGLDVKSLQYLMG 354

Query: 313 WKTVDQA-ETYTKGA 326
                   + YT  +
Sbjct: 355 HSNASVTLDVYTHSS 369


>gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 410

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 96/312 (30%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R Y     ++  T   +   + +        +++ +S   +               
Sbjct: 92  LEKIRSYFVGKDREYITFLPVFDRFNEDIRQRVGHTISKDSLQKYSVLRRHFSEFLIHKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ + +++ +  +A ++ Y+  +P L+
Sbjct: 152 GRKDVGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                            VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 419

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 129/379 (34%), Gaps = 47/379 (12%)

Query: 8   PPFVTKER---TRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           P +  KER    ++ KI  Y R        R+R+        + A  S  T S+ K + I
Sbjct: 45  PLYWDKERECIKKNNKIKGYVRLNNFIDNERVRMKN----QLVEAEQSDRTLSSKKIKDI 100

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHI 119
               ++P        +Y+K+      +V     +++  +++ R +        +IT  ++
Sbjct: 101 IKGEEEPDFF-EFAEQYQKTIESSE-SVRLYNQYKAILNKLERFNKSRQLKFSEITVSYL 158

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPW 174
           +   E      K+  ++    L  +R L+  A  +E V        + + + +   I   
Sbjct: 159 KRFSEHLATECKNRTNTISTNLKVIRKLYNLATLEEVVPEERNPFKKLKLEWEKTNIGYL 218

Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSG-LRCSDSCRAGVQHLQNNIFSIKTQKT 229
           TKED+ + +        +    R  F F +Y+G LR SD      + +Q++       + 
Sbjct: 219 TKEDIDKIRHVELDPMGKDYHIRNMFVFAMYTGGLRFSDLLMLRWEDVQDDERVKVYTQK 278

Query: 230 GT-----------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--S 270
                                     +    +       K         +++++     +
Sbjct: 279 TKTNLTVKLTNVSLAILSIYRPSTYTNASGFIFPFLDNDKNYSNPKYLYRRISSINAVAN 338

Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +    K+G+NK    H  R   AT   + G     +    G  +V   E Y K  ++
Sbjct: 339 TRLREIGKKSGINKHLHFHMSRHTFATRGLEIGMPLTHISKLMGHSSVAMTENYAKLINK 398

Query: 329 IRLGIKNSRRISSVVDSDD 347
                K    I    ++++
Sbjct: 399 E--LDKAMDLIDKYEEANN 415


>gi|307710149|ref|ZP_07646593.1| integrase [Streptococcus mitis SK564]
 gi|307619129|gb|EFN98261.1| integrase [Streptococcus mitis SK564]
          Length = 421

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 109/395 (27%), Gaps = 75/395 (18%)

Query: 11  VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K+   +G++ Y  R          G+++        T        LT      +   +
Sbjct: 13  VIKKTNSNGEVSYILRGLYLGIDEKTGKQVTTSIT-AKTLRQLDRKILTARVNFEKAGGT 71

Query: 64  PRKKPT--TLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120
            ++     T   L  E+  +      + N+        ++ II   GD+   KIT+  I+
Sbjct: 72  RKEDKRLSTFSELAEEWFNNYQVWVTSHNTINRVKGYVYNYIIPAFGDYIPEKITSADIQ 131

Query: 121 SGVESRKHTPSS-------------AIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP 164
             V +      +             A  F      +  +F + +    +  NP  +++ P
Sbjct: 132 RWVNNLAQKARTSIESGKKRAEKGSAKDFGAVTHKLSDIFDFGITHFGLTKNPVKTIKIP 191

Query: 165 KRKT---------EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +                 T     +         +       LL S LR ++     + 
Sbjct: 192 PKPKLASRRTMVLHDEELKTWLAFLKTLPNNRANRRFITICNSLLASALRINELLALEIN 251

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSI 271
            L      I   KT    +     G    +   P  K            +       F  
Sbjct: 252 DLDFTNNEIIVNKTLMWKSANKKLGTKGCMICKPTAKTDSGNRQVPVPNSTLTDLRDFYT 311

Query: 272 WFKAKATKAGVNKS----------------------------------AHGVRKFSATIS 297
                  K G+ +S                                   H  R   A++ 
Sbjct: 312 EMNNYFKKQGLPQSKLIFPTIYGNYMCDRNERATLKKRLTSLGLPDYGFHIFRHTHASMM 371

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
            +AGA   EL    G K+++    TY + A + +L
Sbjct: 372 LNAGANWKELQVRMGHKSINTTMDTYAELAPKKKL 406


>gi|291514510|emb|CBK63720.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|313157429|gb|EFR56850.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 404

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 18/282 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSG------DFDYRKITT 116
              TTL  +  EY++          S  +++     ++++           D    +I  
Sbjct: 103 DSSTTLLSVFQEYKQHQKDMIGKCRSLSTYKRITLVYNRVADFIKVKHHRSDMYAAEIDG 162

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
             +    +    T   +   +  +  +FK   +                +          
Sbjct: 163 SFVDDFSDYLFTTYKVSNNQVQKIMQVFKHVTKICIKKGLLKKDPFSDYKIKFDPVDPNF 222

Query: 177 EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             + + K    +    R        F F  ++GL   D+     +++          K  
Sbjct: 223 LTVDELKLIIQKKFSLRSLETTKDLFVFSCFTGLAFVDAMNLKRENITLAENGDMWIKIT 282

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK--SAH 287
              T       +  +A + I K     ++     +     + + K  A+  G+ K  + H
Sbjct: 283 RQKTNIPSIIPVMDIAKSIIKKYENQNDSYVLPRSPHQHVNAYLKQIASSCGIKKNMTFH 342

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R   AT +   G     +  T G   +   + Y +     
Sbjct: 343 MARHTYATTAMSFGVPIATIAKTMGHANMKMTQHYARVLPEK 384


>gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 96.0 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 92/321 (28%), Gaps = 26/321 (8%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK- 105
           Y++A          I   R      K    +Y +     + A  +   +E    +++   
Sbjct: 89  YVTAELVKNAFLGKIARERTLIEFFKQHNEQYLEKVKM-NTADKTYSRYELTKKRLVEFM 147

Query: 106 -----SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  D   + I    I         +   + ++A++F+   R +  +A +   +   
Sbjct: 148 KFKYSISDILIKDINVVFIEDFLLYIKNNYGCSHNTAMKFVQRFRTVVNFA-KNTGLVTA 206

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAG 213
                 R + +       T E++    +      +    R  F F  Y+ L   D C   
Sbjct: 207 DPFGSYRVRFERTDRDYLTMEEITTIYNHEFSSKRLEQVRDLFIFSCYTALSYIDVCELR 266

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQF 269
            + ++                       ++LL +     E +       K+    +  + 
Sbjct: 267 QEDIRIGFDGNLWII--RKRHKTNVTSTVRLLDIPKAILEKYKEQLPNGKILPIISNQKM 324

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGA 326
           + + K  A    + K+   H  R   AT      G     +    G   +   + Y +  
Sbjct: 325 NDYLKEIAAICRIEKTLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARIT 384

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
           D           ++  +D+  
Sbjct: 385 DLKVSSD--MEMLAQKLDTPH 403


>gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 297

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 84/276 (30%), Gaps = 22/276 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG-DFDYRKITTKHIRS--- 121
            ++  L   +         + N+   +        + + + G +     +T   +R    
Sbjct: 1   MSIDQLWQHFAYHLKVKRRSKNTLNFYDVTRRTLARFLEEQGVEATTDTLTVSQLRGFLV 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +E +   P        ++R LF WA R+E V+ N    +E P    E     T E + +
Sbjct: 61  WLEEQGLGPGGIHAHARALRALFNWAEREELVSRNLASRLELPSLPHERQPAITSERLWK 120

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTII 233
                    +  +       L  +G+R  +     V+ L      I+      ++    I
Sbjct: 121 LLGACKGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKERFVPI 180

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK---SA 286
             +        L      +    ++    +    M  +  SI     A   G+ +   + 
Sbjct: 181 GSKAMSATSAYLRRERKQQHPGVLHVFLSRSGEAMTRSGVSIRLAKLAKNTGIEREVCAP 240

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           H  R+  A      G     L    G  ++D    Y
Sbjct: 241 HAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276


>gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 319

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFCSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R +              +Q          +G + R  
Sbjct: 99  LFDHLLDNNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGTIITVELPDGF 241
              LLY GLR  ++ +     LQ                   +              +  
Sbjct: 159 LAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKGSKIRFLPLHPMAAERIHAYLEQD 218

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
           ++          +         + A       +A A KAG+   +   HG+R  +AT + 
Sbjct: 219 VERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1]
 gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22]
 gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1]
 gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22]
 gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128
            K+      A  S  ++      +    G      D  + ++T + I       +E++ +
Sbjct: 121 LKARIGIDRAKTSYSTYHYMRLTLGEFIGHQYKVKDLAFGQLTEQFIHDYQVFAMENKGY 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    L  ++ + + A ++ Y           PK+  +  R  ++E  ++ +    E
Sbjct: 181 AIDTVRHHLAILKKICRLAYKEGYADKIHFQHFTLPKQSDKTPRALSRESFEKIRDVEIE 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +      R  F F  Y+G+  +D      ++L  +       K             +K
Sbjct: 241 PHRKSHILARDMFLFGCYTGVSYADVISITDENLYTDDNGALWLKY--RRKKNEHRASVK 298

Query: 244 LLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS- 297
           LL       E +   +                 KA A  AG+      H  R   A++  
Sbjct: 299 LLPEAIALIEKYHSEDRDTLFPLLRWPNLRRHMKALAALAGIKDDLCYHQARHSFASLIT 358

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +AG     +    G   +   + Y + + +     ++  + 
Sbjct: 359 LEAGVPIETISRMLGHSDISTTQVYARVSPKK--LFEDMDKF 398


>gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
 gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305]
          Length = 303

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 87/286 (30%), Gaps = 25/286 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSG----VE 124
           L++ +  +  +   A  SR  F     +      +     F+  ++TT+ I        +
Sbjct: 21  LLNAFLDAHDF---ADGSRRGFVLDLRKFAGWFAEANGERFEVGRVTTRDITDFKTFLRK 77

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQF 182
            +    ++  + L ++R  F W   +  V++NP   V+  KR+    +    T+      
Sbjct: 78  DKGQAVATINRSLVTLRRFFGWLAERGTVSLNPAKPVKELKRQQLAPKGLDRTEVRKLLR 137

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTII----T 234
           +       +    F  +LY+G R SD     +  L           +  K          
Sbjct: 138 EIELRNDLRAGAIFSVMLYTGCRVSDLVTLELTDLMIGERKGSVTFRLGKGNKQRVVPLP 197

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
           +         L   P          ++  +            +   GV  + H  R   A
Sbjct: 198 LPARQSLRAYLDSRPPIPSDLVFVGERGPLTDKGVRALCDKYSAIIGVKLTPHLFRHTMA 257

Query: 295 TI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               AD       L    G + ++    YT+  D        + +I
Sbjct: 258 HQFLADNENDLVGLAQILGHENLNTTARYTRRTDAA--LSDAAEKI 301


>gi|297539515|ref|YP_003675284.1| integrase family protein [Methylotenera sp. 301]
 gi|297258862|gb|ADI30707.1| integrase family protein [Methylotenera sp. 301]
          Length = 353

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 103/329 (31%), Gaps = 16/329 (4%)

Query: 14  ERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R    +  +      +G+R+R     E+        A       RE ++   K   + +
Sbjct: 9   YRRPDSRYWWINATLSNGKRVRQSAGTENRQEAEAFLAKIKLDAYRE-VHFGIKPERSWQ 67

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHT 129
             +  +                + S   ++    G     +I    I + ++    R + 
Sbjct: 68  DAVVRFLAVKAML----RDVKGYCSLCRRLDTYLGGMMLNQINGDMIWNIIQGELKRGNK 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  + L   R + +   R E+  I+    +     + E  R    ++  +  +     
Sbjct: 124 IATINRHLAVTRAILR-MARDEWQWIDSVPKIRLLSGEVERDRWLNHDEADRLIAECP-- 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                   F L +G R S+        +        +   K GT   + L    +K+LA 
Sbjct: 181 PHLAAMVRFALTTGCRASEITGLEWNRVDLERRTAWLDKTKNGTPRGIPLNHDAIKVLAA 240

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
                  +      + +     +  + A   + G+ +   H +R   A+    AG +  E
Sbjct: 241 LKGNHPRYCFTFRGEPIKRAITNHAWYAAVERVGLGDFRFHDLRHTWASWHRQAGTSCDE 300

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKN 335
           L    GWK+    + Y K A    L +  
Sbjct: 301 LKELGGWKSRSMVDRYAKFAT-EHLAVAA 328


>gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 89/324 (27%), Gaps = 69/324 (21%)

Query: 74  LISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126
           +  ++ K       A + +  ++  +  Q ++   + +   I        +     +  +
Sbjct: 23  VFEDFLKHHVGEGSAESDTIRTYRCHIKQFLQWCQNTELNPIEATFNQLTRFRHWLIHQQ 82

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
           ++  ++    LT +R  +       Y+  NP + ++ P    +        + ++     
Sbjct: 83  QYQNATISLKLTILRRFYDGLREYGYIINNPAIRLKAPTAVRDPAASINFLENEEMNRLL 142

Query: 185 ------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + RL    ++  G R  D  R  ++++  N  +I  + +    T  +P
Sbjct: 143 DSLPTENTVHALRDRLLISLMVLQGCRTVDLHRVTMENMVKNGKNIGLRVSSKRHTRVVP 202

Query: 239 DGFMKLLAMTPIGKET------------------FFINNDKQKMNATQFSIWFKAKATKA 280
                   +    +                    +      + ++   F           
Sbjct: 203 LTPDLAKLLRRYLRARRKAGELITESTPLFISVAWNNKKIWKPLSRRSFRRIVDKYLGVI 262

Query: 281 GVN------------------------------------KSAHGVRKFSATISADAGATA 304
           G+                                      S H +R  +AT++  AGAT 
Sbjct: 263 GLKELPCPKTLKKLTGSQEKSNLPTKAREFSQHKPKPRKLSPHSLRHTAATLALRAGATL 322

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
            ++    G         Y    DR
Sbjct: 323 EQVQDLLGHTDPKTTMVYVHIGDR 346


>gi|82523915|emb|CAI78637.1| integrase/recombinase [uncultured delta proteobacterium]
          Length = 279

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 81/256 (31%), Gaps = 11/256 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
           L   Y +S    +    +  S+    D+           +I++  +   +E   +  + S
Sbjct: 9   LFKYYLQS----NHKKRTIESYSPLIDKFETIYKHRSLEEISSDEVFQFLEDVTKNLSKS 64

Query: 132 SAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +       ++  + + + +         N  L  +  K      R     +  +   + +
Sbjct: 65  TRRLRYAQIKAFYNFIIDRRSLNMRNPCNTSLLAKAFKAPKNSPRKILDRETVEEMIYKA 124

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  + RL  E     GLR  +  +  V  + +   +++  K+G           +     
Sbjct: 125 KRHRDRLILELQAKCGLRIGELLKIRVSDIPDRTITLREPKSGKEAEKAYMPENVSRKLS 184

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
             I   T         +  +      +    K  VN + H +R++SAT ++  G     +
Sbjct: 185 EYIQGSTIKGAERIFPICYSTARSLIRGLGAKLNVNVTPHDLRRYSATYASRNGVPLEVV 244

Query: 308 MA-TYGWKTVDQAETY 322
                  + +   + Y
Sbjct: 245 SKVILRHQDLKTTQVY 260


>gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 410

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 97/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDF- 109
               +      +++  T+  L  ++ K        S++  +   +       +    D  
Sbjct: 92  LERIKSEYLGKKEEVETMMTLFDKHNKDIAKQVGISVSAATFQKYNVCKRHFMTFLQDKY 151

Query: 110 -----DYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                   ++T   I       +      P++A + + + + +     +   +  +P L+
Sbjct: 152 KRSDIRLSELTYIIIHDFDIYLRTVVGQNPNTATKTMKTFKTITILGRKMGVIHHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D      +++
Sbjct: 212 HRF-HLEPVNRGFLTDEEILKIANKNLGIQRLELVRDLFVFSCFTGLAYIDVANLTPENI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKA 275
                           +V      + +          +T+        +   + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGKTYRDGKLFPMLTNQRTNSYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G +   +    G   +   + Y +  ++    I
Sbjct: 331 IADICGIKKDLTFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|260880928|ref|ZP_05403159.2| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
 gi|260849940|gb|EEX69947.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Mitsuokella multacida DSM 20544]
          Length = 361

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 108/363 (29%), Gaps = 38/363 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    +LP    K     G    Y     G++ +  +      +      L         
Sbjct: 1   MGSIQQLPDKRYKVTVTVG----YVYTKDGKKKQKRHSRIVKSMREARELLR-------E 49

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
            +    K  TL+ +I  Y        + ++++ + ES F+  +      +   I  K I 
Sbjct: 50  YDKSSSKDYTLQEVIHMYFHD---KDIKISTQKTIESVFNTCLSSLYKRNIGSIRGKDID 106

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           S +       ++     T ++ LF +A  +  +   P  S       T  ++     +  
Sbjct: 107 SILSDMDAADTTMRTRSTKIQSLFLYAKHKGIIEHVPEFSARGSMFHTRTMKILPSVNEI 166

Query: 181 QF--KSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFS------------- 223
           Q   +      S P L    LL   SG+R  ++C    +++     +             
Sbjct: 167 QHILEYVREHSSYPYLYHMMLLIVSSGIRVGEACVLQWKNIDMANDTISILNTVTRGQTN 226

Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                + +   +I  + +    ++++   P      F    K  +     +   +     
Sbjct: 227 FELSDRAKTAKSIRIIPVEYSVLEIINEIPKESPYVFFGRKKSFVPPATINRNARKLFDA 286

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
            G  K   + +R F AT     G     +    G  +       YT    D  R   +  
Sbjct: 287 LGYPKLRMYDLRHFHATQLLANGVDIKTVSHRLGHTSPMTTLNVYTHYVEDNDRKAAEMI 346

Query: 337 RRI 339
             +
Sbjct: 347 GDL 349


>gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13]
 gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
 gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13]
 gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124]
 gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495]
 gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987]
 gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC
           3626]
 gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969]
 gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239]
          Length = 290

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI--RSGVESRK 127
           K L+S+Y           N+  ++ +     +    +      + +   I     ++   
Sbjct: 2   KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVEEKGFKVSEDSYPLISYVQHLKESH 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PSS  + + S+R  + + V +E++   P L++++ + + +     T E++ +  +  +
Sbjct: 62  KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVEEINKIMNSTN 121

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
               +G + +   E +  +G++ S+     ++ +  +   +  + +      + +     
Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKAAK 181

Query: 243 KLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           + L    + +E         F+N   + +         K  A  A +  + + +  R   
Sbjct: 182 ESLKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           A      GA A  +    G    +Q  TY 
Sbjct: 242 AVHLLQNGANAKVVQELLG----NQVMTYI 267


>gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 92/307 (29%), Gaps = 20/307 (6%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYF 99
              +    +  +   +  +     +  TL      + ++       +   +S   + + +
Sbjct: 85  AEQSANREVVTAEEVKHQLLGMASEQETLLSYFRLFMRNFEKRVGINRTESSLNGYRNSY 144

Query: 100 DQIIRKS------GDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVR 149
           D ++R         D  +  +    I       +      P + +     ++ +   A+ 
Sbjct: 145 DHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIA 204

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCS 207
              +   P +  E    ++E     T+E  +   +     +    R  F F  Y+G+  S
Sbjct: 205 DGIITAFPFVGYEPTHPQSEQKYLTTEELNRIMTTPLHSRTLYHVRDLFLFSCYTGIPYS 264

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMN 265
           D C    ++L      I   ++    T    +  +  L +  I K        K     +
Sbjct: 265 DMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPEGKLLPMYS 324

Query: 266 ATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETY 322
            +  + + K  A   G+ +    H  R   AT      G     +    G   +   + Y
Sbjct: 325 NSSLNHYLKQIAVLCGIERKLVFHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLY 384

Query: 323 TKGADRI 329
            K  D  
Sbjct: 385 AKVTDNK 391


>gi|257125187|ref|YP_003163301.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049126|gb|ACV38310.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 354

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 106/337 (31%), Gaps = 25/337 (7%)

Query: 14  ERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  R              +R  L Y            A            +        K
Sbjct: 17  KINRTNPFRVRVTNPVTKKRHSLGYFSTKK------EATEILNKYFNNPYNLENHRIKFK 70

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L   ++ S     +A N+  S+ + F +  ++  +  ++ I+T  +++ +     + S+
Sbjct: 71  DLFELFKNSKKDI-VAKNTLNSYINSFKR-CKELHNLVFKDISTPVLQNLINDLNCSIST 128

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +++ + +A   + +  N    +  PK      +     D  +     ++    
Sbjct: 129 KSITKGFLKIFWDYAREIDILEKNRAEFINLPKETETKEKKPFNYDEIEKLWENTDIIWV 188

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA--- 246
           +     ++Y+G+R  ++     +++      I      + G   ++ +    ++++    
Sbjct: 189 KYI-LIMIYTGMRIEETVELKKENVDLQQEFIHGGNKTRKGKNRSIPIHKDIVEIIKELY 247

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
                   +           N+ + +    F   F        +NK   H  RK  AT+ 
Sbjct: 248 ENSPTDYLIYNDKWIFSKKKNENKPLRKNYFREKFYKTLETLKINKHKPHDCRKTLATLM 307

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           ++       +    G + +   + Y    D+ +L + 
Sbjct: 308 SNQKINNIVITDIMGHENIATTKQYYIQTDKQKLKLS 344


>gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
 gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483]
          Length = 308

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 93/304 (30%), Gaps = 33/304 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF-DYRKITTKHIRSGVE 124
           +  T+K +   +++      +  ++  ++     + I    G+  +  +   +       
Sbjct: 3   QKKTIKEISVLWKEDKK-QYVKQSTFAAYVLILENHIYPTFGEMYELEENKVQEFALQKI 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   +  S    L  ++++ K+ V+  Y+           + + + +   +    ++  S
Sbjct: 62  NNGLSKKSIKDILIVLKMILKFGVKHGYLDYKEWEIRFPTEDEKQHLEVLSISHQKRIMS 121

Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           F  E  +   L     L +GLR  + C      +   +  I  ++T   I +   +    
Sbjct: 122 FIQEHFTFKNLGIYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHT 181

Query: 244 LLAMTPIGK--------------------------ETFFINNDKQKMNATQFSIWFKAKA 277
            L +                                 + + N+++      +  ++K   
Sbjct: 182 ELIINTPKTKNSIREIPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLM 241

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
               +     HG+R   AT   ++      +    G   +    + Y     ++ +  I 
Sbjct: 242 KDLNIPELKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTTLDLYVHPNMEQKKKCID 301

Query: 335 NSRR 338
              +
Sbjct: 302 RMIK 305


>gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli]
 gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei]
 gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae]
 gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae]
 gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli]
          Length = 325

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 78/299 (26%), Gaps = 51/299 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R        A+ +  ++  +  + I        + + ++ +R  + S  ++   AI    
Sbjct: 11  RTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQK 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
                  +   +        +      +        +  ++Q+        ++ ++ F  
Sbjct: 71  IALNALAFLYNRFLQQPLGDIDYIPASKPRRLPSVISANEVQRILQVM--DTRNQVIFTL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  +GLR ++  R  V+    +   I                                  
Sbjct: 129 LYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKXLIEQARLIQ 188

Query: 229 ----------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                +      +M +   + +    +     +  ++ +     
Sbjct: 189 QDDNLQGVGPSLPFALDHKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKA 248

Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            KA   KAG+     + H  R   AT    AG     +    G   V   + YT    +
Sbjct: 249 LKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQ 307


>gi|47093535|ref|ZP_00231296.1| phage integrase [Listeria monocytogenes str. 4b H7858]
 gi|47018095|gb|EAL08867.1| site-specific recombinase, phage integrase family, putative
           [Listeria monocytogenes str. 4b H7858]
 gi|328468081|gb|EGF39087.1| integrase [Listeria monocytogenes 1816]
          Length = 346

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 86/326 (26%), Gaps = 25/326 (7%)

Query: 15  RTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R            HG+  ++     +       +             + R   TT   
Sbjct: 5   VKRGKSYRAQVSLYKHGQHKKISQTFSTKKEENLWALEMELAKGEGKELAHR--TTTFAD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               +        +   +  ++      I     D   + +    ++  V+     H+  
Sbjct: 63  FFENWIYLVKVNDVKETTFQNYVRTLGIIRNLFQDIQLKDLNDIVVQKKVDEYAKTHSRK 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188
           +  + L  ++   + A  + Y+A +    V+    K          T     +       
Sbjct: 123 TTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGEKPPKRNKALSITDFRKLRNYVLQHP 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVEL 237
             +  L     L +G++  +      + L      ++   + T              V +
Sbjct: 183 EDEFNLLVLLALETGMQRGELLAIRPESLYEYGIKVRHSISPTSDDTSLKTLNAKRDVSI 242

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296
                +L+   P+ ++ +  +    K +             K  + K+  HG+R   A+ 
Sbjct: 243 NKEVYELIRKIPVKEDGYIFSFGGFKQSEQ-----LAELLKKLDIKKTTFHGLRDTHASF 297

Query: 297 SADAGATAHELMATYGWKTVDQAETY 322
                     +    G   +   + Y
Sbjct: 298 LFAQDIDIAYVSKRLGHINIQTTQNY 323


>gi|322377262|ref|ZP_08051754.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. M334]
 gi|321281975|gb|EFX58983.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. M334]
          Length = 388

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 124/383 (32%), Gaps = 64/383 (16%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +                 +   S 
Sbjct: 3   ITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQ--KEVKQKANQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K +T+K    L + + +S    ++  N++ +      + I+   G +   K+TT  I+
Sbjct: 61  RQKASTIKNYQELANLWLESYK-NTVKPNTQGNVRKLIDNHILPIFGAYKLDKLTTPLIQ 119

Query: 121 SGVESRKHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           S +       +           +     + + ++ V  + +  NP   V  P+   +  R
Sbjct: 120 SIINKLADKTNREEKGAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKR 179

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNI 221
              K    Q    +       +  + R  +E  LY     +G R +++       +  + 
Sbjct: 180 QKVKHFENQELKKFLGYLDNLDSDRYRYYYETTLYKFLLATGCRINEALALSWSDIDLDG 239

Query: 222 FSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI----------- 257
             +   KT                  +++    + +L    + +                
Sbjct: 240 AIVHITKTLNRYLEINSPKSKSSYRDIDIDQETVSMLKQYKLRQSKEAWKIGQRESVVFS 299

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +   +  ++++     +    +A V     HG R   A++  ++G    EL    G  T+
Sbjct: 300 DFIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTL 359

Query: 317 DQAE-TYTKGADRIRLGIKNSRR 338
                 Y+       L  +N+++
Sbjct: 360 SMTMDIYSH------LSKENAKK 376


>gi|297208820|ref|ZP_06925236.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|296886545|gb|EFH25462.1| integrase [Staphylococcus aureus subsp. aureus ATCC 51811]
          Length = 276

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 79/258 (30%), Gaps = 16/258 (6%)

Query: 88  AVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLF 144
             N+   + +    I +   G  +  KI  +  +  +    ++H   +  +   ++R   
Sbjct: 4   KENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSAL 63

Query: 145 KWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             A+    +  NP   V      P +  +       E          + ++  LA   ++
Sbjct: 64  DDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMI 123

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQ-------KTGTIITVELPDGFMKLLAMTPIGKE 253
            +G R S +    ++H+     +I               I        M +++   I  +
Sbjct: 124 CTGCRVSGARNIKIEHINQVKNAIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYD 183

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
            +        +N    +   K+      +   ++H +R    +     G + H +    G
Sbjct: 184 GYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLG 243

Query: 313 WKTVD-QAETYTKGADRI 329
            K +      Y+   +  
Sbjct: 244 HKNIAITTSVYSHLLEEK 261


>gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 289

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 84/269 (31%), Gaps = 24/269 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESRKHTPS 131
           + +     +LA N+   +++Y    +    + +        ++    +++   SR  +  
Sbjct: 7   FIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHLSDR 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    ++ ++  + +      +      S    ++    +      +         +  +
Sbjct: 67  TMNMVISHLQFFWIYV-----LHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPK 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            RLA   L  +GLR  + C    +++   ++   I   K  +   V +P+   + +    
Sbjct: 122 ARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYW 181

Query: 250 IGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                                + M+               G++     H +R   AT S 
Sbjct: 182 YSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDHRNALGMDSRFCAHSLRHAYATHSY 241

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
           + G     L +  G ++++    Y   A 
Sbjct: 242 ENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|149020298|ref|ZP_01835190.1| Integrase [Streptococcus pneumoniae SP23-BS72]
 gi|147930600|gb|EDK81582.1| Integrase [Streptococcus pneumoniae SP23-BS72]
          Length = 388

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/386 (12%), Positives = 115/386 (29%), Gaps = 56/386 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63
           +T+   + G  +Y            G++++          + A          K      
Sbjct: 3   ITEYTKKDGSTVYRSSVYLGIDTVTGKKVKTTISGRTKRELKAKALQAQIDFEKDGSTVY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   L+  + ++    ++   +    +S  +  ++   G++   K+T   I+  
Sbjct: 63  KTVEIKTYAELVENWLETY-CHTVKKATLTIIKSRLNNYVLPAFGEYKLDKLTPPVIQKQ 121

Query: 123 VESRKHTPSSAIQ------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           V       +   +       L S+ + + K+AV  + +  NP   +  P+RK +  +   
Sbjct: 122 VNQWAKEYNQLGKGYQEYPQLNSLNKRILKYAVSLQVIPFNPARDIIVPRRKEKEGQKLK 181

Query: 176 KEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FS 223
             D                  +     + ++ LL +GLR  +        +         
Sbjct: 182 YLDDDNLKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLQNGTLDV 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINNDKQ 262
            KT      +T       ++++ +                          E  F N+  +
Sbjct: 242 NKTLNCEKEVTTPKTKSSIRVIDLDNKTVLMLRLYKNRQAQVGREIGLTYEKVFSNSFDE 301

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
             +A       +     +   + + H  R   A+I  +AG    E+    G   +     
Sbjct: 302 YRDARALRSRLEKHLKLSDCPRLTFHAFRHTHASILLNAGLPYKEIQTRLGHSQISITMN 361

Query: 321 TYTKGA-DRIRLGIK----NSRRISS 341
           TY+  + D  +           ++ S
Sbjct: 362 TYSHLSKDNKKNATSFYEKAIEKLKS 387


>gi|313638213|gb|EFS03461.1| gp28 [Listeria seeligeri FSL S4-171]
          Length = 376

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 93/350 (26%), Gaps = 45/350 (12%)

Query: 21  IIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
             Y       G  +                 S +     +   IN+  +          +
Sbjct: 11  WKYRVSYKEAGKYKVKSKSGFPTKKLALLAASEMEQKLHRGVDINAGEEN---FIEAFKD 67

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQ 135
           +  +      +V +   ++       +         +     +  +     T +  +  +
Sbjct: 68  WYTTFRKQKKSVENDKHYDYAIKFCEKYFAGLKINDVNRTTYQKAINEFAKTHAKETTRK 127

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +R   +  V +  +  +P   V  P  +T      +  ++Q  K      +     
Sbjct: 128 RHVYVRSFIREMVYEGVILRDPTARVIIPDDETTYKDLKSLSEVQVKKLVKELNNHFNPI 187

Query: 196 F------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIIT 234
                   F + SG R S+        +     +IK  KT                +   
Sbjct: 188 HSSISVILFAIASGARFSEIIGLTWDCIDFVQKTIKINKTWDYKNTNAFSNTKNYSSNRI 247

Query: 235 VELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           + + D  + +L                    +  FIN +    +    +   K    K G
Sbjct: 248 ITIDDNTLSMLNKIKVYQSAEKLKDSTFNKNKLIFINGNCFPPSNNAINKSLKRYCKKLG 307

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
            NK  S HG+R   AT+          L    G  T+    ETY+   D 
Sbjct: 308 FNKDISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDE 357


>gi|322372756|ref|ZP_08047292.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
 gi|321277798|gb|EFX54867.1| site-specific recombinase, phage integrase family [Streptococcus
           sp. C150]
          Length = 379

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 39/352 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            VTK+  + GK  YYF+ G     G+  +       T   A+  A T +  K +     +
Sbjct: 8   GVTKD-DKTGKYTYYFKAGVDLATGKPYQERRRGFQTAKEAF-EARTRALNKIQQKGGIK 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T K  + E     ++ + + +     +  FD+ I+  G    R+ITT  + +    
Sbjct: 66  HTQWTFKQFMEEVFMPNYYATTSPDLEHRRQVIFDEFIQYFGKKKPREITTYDVINYRNG 125

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQF 182
              +++ S A   +T +  + K A +   +      S   P     + I  WTK++ Q+ 
Sbjct: 126 LLERYSNSYARNKMTLLNQVLKTAKKYGLIFHEIPTSNISPIPIIKKHIDFWTKDEFQKV 185

Query: 183 KSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTG 230
                + S         F    ++G+R +++     + +          +      ++  
Sbjct: 186 IQSLDKKSYFEHFVYTLFWLYYFTGMRVNEATALYWEDVDFEKKTLAINHNLQYINRENW 245

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIWFKA 275
                   +   + + +            ++Q                            
Sbjct: 246 VRRNKLKTESSRRTIGLDDNTLNVLKEWKERQAKVDKIPFILSLDGNPYRKRSIRDQILK 305

Query: 276 KATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQA-ETYTK 324
            + +AGV      G+R   A++   +    A  +    G   V      Y+ 
Sbjct: 306 YSKRAGVKYIQPKGLRHSHASLLINEYNVNALYIQRRLGHSDVKTTLSIYSH 357


>gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 285

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 83/261 (31%), Gaps = 14/261 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR--KHT 129
           L+ EYRK   +   + ++   +     + ++     +    +IT +           K+ 
Sbjct: 10  LMEEYRKYLVYNEKSKSTINKYLRDAGKYLQFLKTREGAGNEITKESTMDYKMELMEKYK 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+S   +LT++     +  + +   +      +R            +       + + + 
Sbjct: 70  PASVNSYLTAVNSFLTFYGKTDC-HVRLLKIQKRIFTDQSRELTKAEYIRLVETARYDKK 128

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +  L  E +  +G+R S+     V+ L +   S+  +       + +P    + L    
Sbjct: 129 ERLALIMETICGTGIRISELQNITVESLLSGYASVSCKG--KERIILIPVKLKEKLREYC 186

Query: 250 IGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302
              E      FI    + ++ +           KA ++      H +R   A        
Sbjct: 187 FKHEIQSGSIFITRSGKPIDRSNVWTEMNKLCEKANISHGKVFPHNMRHLFARTYYGKQK 246

Query: 303 TAHELMATYGWKTVDQAETYT 323
               L    G  +++    YT
Sbjct: 247 DIVHLADILGHSSIETTRIYT 267


>gi|54022678|ref|YP_116920.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54014186|dbj|BAD55556.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 403

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 105/345 (30%), Gaps = 32/345 (9%)

Query: 2   TPSLRLPPF-VTKERTR-HGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           T   R P   V +  ++ HGK   +  R   G                       +    
Sbjct: 16  TKEERCPDGTVHRVPSKLHGKGKRWRARYVDGTGRENTKRFARKVDAQSWLDAQTAAVVS 75

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
                P     T+  + + +  +    S   ++R  + S  D  I  + G+     +  +
Sbjct: 76  GVHAPPSAGRVTVDVIATAWLDNH--PSWEESTRSRYRSVVDAHIRPRWGNVRVADLAHE 133

Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            I+  V  +        +  + L  +  +  +AV    +A+NPC +V RPK++    R  
Sbjct: 134 EIQQWVIEQVSGGAAGGTVRKNLGVLSQICDYAVITRRIAVNPCSTVNRPKQRLAKRRYL 193

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------- 223
           +  ++   +    +     L    L Y GLR ++     V  +                 
Sbjct: 194 SGMEV---ERLAEQAGGNWLTVMVLAYCGLRFAELAGLQVSSVSLQRRRLQIERTITEVD 250

Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKA 275
                K  K     +V  P    + L           E F  +             W+  
Sbjct: 251 GVLVTKAPKDHQRRSVPFPAFLAEPLERHLAGRRPDSEVFTSSTGAILRVRNMRRAWWDG 310

Query: 276 KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A  AG+   + H +R  +A+++   GA+   L    G       
Sbjct: 311 AAKAAGLEGLTPHEMRHTAASLAVSHGASVLALQRMLGHDKPSTT 355


>gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 75/270 (27%), Gaps = 28/270 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  +  +       +     D + + I  + +        R  ++ +    S+   +
Sbjct: 122 KSKAEGTYTNLCYANRMLCEFIKDLESKDIEIQSVTEELFEEYRFFLKKKGLKGSTINNY 181

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---R 193
           L  +  L  +    + +           ++  + IR  +K D++   +     S     R
Sbjct: 182 LCWLSRLM-FRAVSQRIIRYNPFEHAEYEKVEKAIRFLSKSDVKNLMAMKMCDSDAELAR 240

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------------D 239
             F F  ++GL  +D       ++++        +     T                   
Sbjct: 241 RMFIFSCFTGLAITDMEHLTFGYIKSAADGQMYIRKERQKTKMEFIVPLHPIAKTIIEQQ 300

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
             ++ +               +   + +  +          G+ +    H  R    T+ 
Sbjct: 301 RQLQAVKEESNNTNMDNRLIFQPCCSRSVLAAKLSIVGKACGIKQRLSYHMARHTFGTMC 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AG     +    G  ++   + Y +  D
Sbjct: 361 LSAGIPIESIAKMMGHASIASTQIYAQVTD 390


>gi|319949774|ref|ZP_08023799.1| phage-related integrase [Dietzia cinnamea P4]
 gi|319436574|gb|EFV91669.1| phage-related integrase [Dietzia cinnamea P4]
          Length = 317

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           R     P     T++    ++ ++        ++     ++  +I+   GD     +   
Sbjct: 2   RGDYIRPEDAQLTVEQWCEQWLEAYKVHR--PSTVRQARTHVKRIVAAFGDQRLSDVRPT 59

Query: 118 HIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +RS + S +    +A       + +  +   AV    +  +PC     P      +   
Sbjct: 60  MVRSWIASMQGEGLAASTIYALHSRLAHIMADAVHDGILQRSPCSRRTSPPMGKTKVYVA 119

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230
           T E +        E  +P  A     ++GLR  + C   V  +     S+  +       
Sbjct: 120 TTEQIWALHDEMPEHLRP--AILLGAFAGLRLGEVCGLRVDDVDFMRGSVTPRFQAGGAP 177

Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----- 280
                + +TV +P     LL+ +     T ++  +     A  F    +    +A     
Sbjct: 178 LKTSGSEMTVPVPRDLALLLSESVATWGTDYVVTNGLGGPARDFQ--VERAVREARGRVP 235

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           G+ +    H  R   A+I    GA    + A    ++     + Y    D
Sbjct: 236 GLPERFTHHDCRHHYASILIAGGADIKTIQARMRHQSARVTLDVYGHLMD 285


>gi|168702311|ref|ZP_02734588.1| codV [Gemmata obscuriglobus UQM 2246]
          Length = 345

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 91/334 (27%), Gaps = 17/334 (5%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +Y R   G+   L              A                 P  L    +++  + 
Sbjct: 16  WYVRF-EGKLTSLGVKG--KGNQEAAKAAFEKLRTTPKPPPITAGPVLLPQAFAQFLVAC 72

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                  N+   +E      +      +  ++T  HIR  +       ++    L S+  
Sbjct: 73  KLSR-KPNTVARYEYDAGDFVNDHPTLEPAQVTADHIRQWLADLDVGQTTKAIMLRSVSA 131

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            F W V+++ +  NP   V RPK  +   +    E   +           R     L  +
Sbjct: 132 FFGWLVKEDKLEKNPVKKVTRPKTASRSDKALISEADHKRL-LEGASRDFRDVLVVLHGT 190

Query: 203 GLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF- 256
           G R  +  +   +              KT  TG    V L      LL    +   T   
Sbjct: 191 GCRPGELQQITAETFNYKDRVVVITEHKTDHTGKPRPVYLTPELADLLHSKLVKYPTGPL 250

Query: 257 -INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
              N          +   K    K GV   A+G R    T    +G +  ++ A  G  T
Sbjct: 251 LRGNKGVPWTGRAITESMKKLRKKTGVKAIAYGYRHTFVTDGLKSGLSNSQVAALVGHTT 310

Query: 316 VDQAET-YTKGADRIRLGIKNSRRISSVVDSDDP 348
               +  Y+             R      +   P
Sbjct: 311 TAVIDRFYSHLG----AAGDALRAALKFREKPKP 340


>gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum]
          Length = 320

 Score = 95.6 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I  +      ++ +K +   +         A +   
Sbjct: 10  KEYMQARHYAKKTIEAYLHWITRFIYFNNKTHPMRMGSKEVEMFLTDLAVNGKVAAKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L           ++  ++ ++ +   +     T+ ++++F        + +L   
Sbjct: 70  LALNSLHFLYREIIKEPLSISMNFKKSQLAQKLPVVMTRTEIKRFLEH--IEPRYQLQIM 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------------------TIIT 234
            L  SGLR  +  R  +Q +  +  +++  +                             
Sbjct: 128 LLYGSGLRLMECVRLRIQDIDLDYGAVRVWQGKGGKNRTVTLAKELYPQLAEQQALAKRY 187

Query: 235 VELPDGFM--------KLLAMTPIGKETFFINND-----------------KQKMNATQF 269
            +                L          F  +                  +  +N +  
Sbjct: 188 YDKDMQTKGYGGVWLPNALREKYPSAPYEFNWHYLFPSNLLTLDENSGLKRRHHINESAL 247

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A  A + KS   H +R   AT   +AGA    +    G   V   + YT   D
Sbjct: 248 QRAVRKTAHDAEIQKSVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHVLD 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
 gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 91/267 (34%), Gaps = 24/267 (8%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGV---ES 125
           L   + K   +  + +  + +S+    ++            D+  +    IR  V     
Sbjct: 5   LKDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEYFKTVDECLDFTVVDVDLIRGWVLSLME 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQ 180
             +T +S  + L+S+R  +++ +RQ  V+++P   V  PK+K            ++   +
Sbjct: 65  EGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEADMSRLLDE 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
                  EG + ++  E    +G+R S+        +  +      T K      +   D
Sbjct: 125 ADFGTSFEGVRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGKRNKQRFIPFGD 184

Query: 240 GFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATK--AGVNKSAHGV 289
                L      +E  F           + + +      +  K   +K  +   KS H +
Sbjct: 185 KLKSDLNAYLSVREERFPGGGEAFFLRGNGKPIYPGLVYLLVKRNLSKVVSLKKKSPHVL 244

Query: 290 RKFSATISADAGATAHELMATYGWKTV 316
           R   AT   +  A    +    G +++
Sbjct: 245 RHSFATSMLNNHAELGAVKELLGHESL 271


>gi|268611535|ref|ZP_06145262.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 339

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 103/320 (32%), Gaps = 38/320 (11%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
                +  TL+     +       ++   ++ ++ SY  + I R  GD +  K++ + ++
Sbjct: 19  EPKEIQKFTLREWNERWLNIY-CKAIKTTTKEAYISYTENHINRVLGDIELCKLSREDVQ 77

Query: 121 SGVESR--------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             + S           +P S       +      AV   Y+  NP    + PK K   + 
Sbjct: 78  LFLNSLSLGIGLEKALSPKSIKNIHGILHKSLDVAVDNGYILANPAKKNDLPKIKKSEVH 137

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------- 219
             + E++++F           L F+  L++G+R  +        +               
Sbjct: 138 ALSVEEIKKFLIAIKGCQMEYL-FKITLFTGMRAGEIMGLTWDCINFEEGYISLYRQLVR 196

Query: 220 --------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269
                     ++  + K G    +  P   M +L      K + F+  +        +  
Sbjct: 197 IKNPKSDNYYYTFSSLKNGRSRRLYPPMFVMNMLFKMKEKKTSDFVFCNSENNHFTHSAI 256

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
               K    K G+ +   H +R   ATIS  +      L    G  +     + Y     
Sbjct: 257 YNSLKRITGKIGITDFRFHDLRHTYATISIRSDVDTMTLKENMGHHSAAFTLDVYGHC-- 314

Query: 328 RIRLGIKNSRRISSVVDSDD 347
             R+ ++ + +I   +  + 
Sbjct: 315 DRRMKLEGTSKIDRFITDNF 334


>gi|260425160|ref|ZP_05779169.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
 gi|260404344|gb|EEW97891.1| site-specific recombinase, phage integrase family [Dialister
           invisus DSM 15470]
          Length = 274

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 77/247 (31%), Gaps = 31/247 (12%)

Query: 109 FDYRKITTKHIRSGVES------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
               KIT   IR+                RK++P+        +  +F +AV    +  N
Sbjct: 1   MPINKITPADIRAWQNQILQATYITKGLQRKYSPTYVKVLHVQLSAIFNYAVTYYRLPSN 60

Query: 157 PCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P        +     ++ WT E   +F S +   S   L F  L Y+G+R  +     + 
Sbjct: 61  PAKLAGSIGKTRAHTMKFWTIEQFTRFISSFPADSTEYLIFNLLFYTGMRSGELLALTLA 120

Query: 216 HLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINN 259
                  SI+  KT +                   + LP   + +L            N 
Sbjct: 121 DFYEREKSIRINKTYSRLHKKDIITSPKTEKGNRVILLPQFIVDMLTDYINRSPYIKQNE 180

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                         K     +GV +   H +R   A++  + G +   +    G + +  
Sbjct: 181 RIFPCTKFWLFRHMKLGCKLSGVEQIRIHDLRHSHASLLIEMGFSPLLIKERLGHEDIKT 240

Query: 319 A-ETYTK 324
             +TY+ 
Sbjct: 241 TLQTYSH 247


>gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 92/307 (29%), Gaps = 20/307 (6%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYF 99
              +    +  +   +  +     +  TL      + ++       +   +S   + + +
Sbjct: 81  AEQSANREVVTAEEVKHQLLGMASEQETLLSYFRLFMRNFEKRVGINRTESSLNGYRNSY 140

Query: 100 DQIIRKS------GDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVR 149
           D ++R         D  +  +    I       +      P + +     ++ +   A+ 
Sbjct: 141 DHLVRFLQSQYKLSDIPFAALDRSFIEKFDLHLRTECHLAPGTIVNLTVRLKTIVGEAIA 200

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCS 207
              +   P +  E    ++E     T+E  +   +     +    R  F F  Y+G+  S
Sbjct: 201 DGIITAFPFVGYEPTHPQSEQKYLTTEELNRIMTTPLHSRTLYHVRDLFLFSCYTGIPYS 260

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMN 265
           D C    ++L      I   ++    T    +  +  L +  I K        K     +
Sbjct: 261 DMCMLTNENLSLAEDGIWWIRSSRKKTGVDFEIPLMELPLHIIEKYRDVAPEGKLLPMYS 320

Query: 266 ATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETY 322
            +  + + K  A   G+ +    H  R   AT      G     +    G   +   + Y
Sbjct: 321 NSSLNHYLKQIAVLCGIERKLVFHVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLY 380

Query: 323 TKGADRI 329
            K  D  
Sbjct: 381 AKVTDNK 387


>gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 97/308 (31%), Gaps = 32/308 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +T + P     N   +   TL+ L   +         +  +   +       +       
Sbjct: 1   MTRANPPTATENHISRHGQTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLSWCEPRG 60

Query: 111 YR---KITTKHIRSGVESRKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPC 158
                +++   + +     +    +             LT++R+LF+W +++  +  NP 
Sbjct: 61  ITYAPQVSLAVLEAYQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPA 120

Query: 159 LSVERPKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +  PK +            T+  +Q   +    G + R   E L  SG+R S+     
Sbjct: 121 ELLALPKEERRLPAQVFSEAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLL 180

Query: 214 VQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------- 264
           +  +       +++  K G    V +    +  L                          
Sbjct: 181 LSDVDFTRGVVNVRRGKGGKDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKG 240

Query: 265 ----NATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               + T  ++  +A    A + K+   H  R   AT   + GA    + A  G + ++ 
Sbjct: 241 TGLAHGTLTAMAGRAIREGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLET 300

Query: 319 AETYTKGA 326
            + YT+ A
Sbjct: 301 TQIYTRVA 308


>gi|134298368|ref|YP_001111864.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051068|gb|ABO49039.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 383

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 42/355 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             +R+   +             +     + E         T L   +  + +     +LA
Sbjct: 27  KRKRMVRGFKGTKKEAE---KEMARLIAEYETGQYIEPSKTCLGDYMLRWLEDYGKPNLA 83

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145
             +  S+       II   G     K+   H++     +    +  +       ++    
Sbjct: 84  PTTYYSYSKIVEKHIIPSIGSIIIEKLQPMHLQRYYSQKLQTLSNRTVQYHHRVLKEALS 143

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            AV+ + +  NP  +V+ PK K + I               S+     +     +++G+R
Sbjct: 144 HAVQWQLLNRNPADAVQAPKNKQKEIE-LPDLSNIDRMIQASKDHPDHIIIISAVFTGMR 202

Query: 206 CSDSCRAGVQHLQNNIF----------------SIKTQKTGTIITVELPDGF-------- 241
             +      Q L  +                       K+       +   F        
Sbjct: 203 RGELLGLRWQDLDFDKNLLYVRNTLQRLPDKGKFFTEPKSKKSRRQIIIPHFLTNLLKDH 262

Query: 242 -------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
                     L       +  F   D    +    S  FKA   K G+     H +R F 
Sbjct: 263 RKKQLEERFKLGHLYQDHDLVFPRPDGTPADPGTVSHRFKALVDKIGLSGLRFHDLRHFH 322

Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT+         ++    G +T+    + Y+       +  + + ++  +     
Sbjct: 323 ATLLLAENINPKKVQERLGHQTISLTLDVYSHLIPS--MQNEIAEKLEEIYGHRF 375


>gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 289

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 85/269 (31%), Gaps = 24/269 (8%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESRKHTPS 131
           + +     +LA N+   +++Y    +    + +        ++    +++   SR  +  
Sbjct: 7   FIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHLSDR 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    ++ ++  + +      +      S    ++    +      +         +  +
Sbjct: 67  TMNMVISHLQFFWIYV-----LHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPK 121

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            RLA   L  +GLR  + C    +++   ++   I   K  +   V +P+   + +    
Sbjct: 122 ARLACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYW 181

Query: 250 IGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298
                                + M+          +    G++     H +R   AT S 
Sbjct: 182 YSCPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDRRNALGMDSRFCAHSLRHAYATHSY 241

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
           + G     L +  G ++++    Y   A 
Sbjct: 242 ENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270


>gi|227874538|ref|ZP_03992701.1| integrase family protein [Mobiluncus mulieris ATCC 35243]
 gi|227844747|gb|EEJ54893.1| integrase family protein [Mobiluncus mulieris ATCC 35243]
          Length = 325

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 79/319 (24%), Gaps = 40/319 (12%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG-DF 109
                     N       TL  +   Y + A   +    +   + +     I  K     
Sbjct: 8   AARNILDSRENPDDTDTLTLGGIHQSYLEHAASYA-TPGTIARYRNMAASYIFPKIPPQT 66

Query: 110 DYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             R +T + I + V   +  P          +  + +  +  LF + +    +  NP   
Sbjct: 67  PIRALTRESIENYVTWLRAKPSRYGTSLKPRTIKRIVAFLSTLFNYQIEIGNLESNPARG 126

Query: 161 VERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +  P           T + +++            +   FL  +GLR  ++       +  
Sbjct: 127 IRIPNDAIPTQPVFLTPQQVEKIADNC---GYYGVLVRFLYATGLRFGEATALTPADVNV 183

Query: 220 NIFSIKTQKTGTI------------------ITVELPDGFMKLLAMTPIGKETFFINNDK 261
              +I   K                       TV +    + LL    +    F  +   
Sbjct: 184 KTRTITVSKAWKQGEKSSDFYLGAPKTDTSTRTVLVSKSVIALLKPLLVEDAPFLFHPKT 243

Query: 262 QKMNA---TQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +         F    +K            H +R    +    AG     +    G K + 
Sbjct: 244 RPDRPLRNKTFRNCAWKQAVENMDPRPRIHDLRHSHVSRLIQAGIPLPVIQKRVGHKDIQ 303

Query: 318 QA-ETYTKGADR-IRLGIK 334
                Y     +  R    
Sbjct: 304 TTINIYGHITPKDARAAAD 322


>gi|160939547|ref|ZP_02086896.1| hypothetical protein CLOBOL_04440 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437498|gb|EDP15261.1| hypothetical protein CLOBOL_04440 [Clostridium bolteae ATCC
           BAA-613]
          Length = 394

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 100/337 (29%), Gaps = 37/337 (10%)

Query: 18  HGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G   +     F    G++I+       T   A   A +          + +K+  + K 
Sbjct: 11  NGTYYFRANLGFHPITGKQIQKYKSGFKTKKEA-REAYSKLILASTEELAEKKQQLSFKQ 69

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--P 130
            I E Y        +  ++ ++  S   +           +I   ++++          P
Sbjct: 70  FIEETYLPWYK-TQVKESTYLNRRSTIQKHFSYFYKMTVDEIKPSNVQNWQLELAKKFNP 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +        + + F  A+       NP   +   K K   +  WT ++ Q+  S   +G 
Sbjct: 129 NYIRIVQGMLSIAFDRAIVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLYKGD 188

Query: 191 QPRLAFEFLLY----SGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKT 229
                     +    +G+R  ++       +                  +    ++ +  
Sbjct: 189 YYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTMDEYKFVEPKTQ 248

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVN 283
            +I T+ +    +K L      ++    +       +    +        K  A  AGV+
Sbjct: 249 ASIRTIYIDTDTIKELKAWQEVQQKVLKDCDLVLSYNGIPTSKHTLPRALKKLAGLAGVH 308

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   H +R   A++    G     +    G + +   
Sbjct: 309 RIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|138896499|ref|YP_001126952.1| integrase, phage-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268012|gb|ABO68207.1| Integrase, phage-related protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 378

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 98/359 (27%), Gaps = 39/359 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + ++G+  Y        + +               A      +                 
Sbjct: 6   KMKNGRWRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAGDQLFPEY 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           +  + +    G  +     + E     +         +++T    +  +     T +  +
Sbjct: 66  MRNWFELYKKGKHSPEHDKNVEYSVQLVEEYFAGVKMKELTRDMYQKFINEIAETRTTET 125

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +  T ++   K A+ +  +  +P   V    +K          + Q+ K   +E  + 
Sbjct: 126 VKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKKKGKDEELKYLNYQEAKQLIAEIKKD 185

Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
                  R    F L +G R S+        +      +   KT                
Sbjct: 186 MRSKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFADTKTYS 245

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKAKA 277
           +  T+++ +   K+L      +    +             N   + ++    +   K   
Sbjct: 246 SKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLC 305

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
            K G+   + H +R   A++     A    +    G K +    +TY+   D +     
Sbjct: 306 RKLGLKEVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELEQAEN 364


>gi|325912538|ref|ZP_08174926.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325478159|gb|EGC81283.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 329

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 77/264 (29%), Gaps = 14/264 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           +  ++ +  +      +  S   + +  + +  K    + R++ T  +R         + 
Sbjct: 52  EQFLNNFLSAKRIEGCSEKSLTYYRATIEVMTTKI-KKNVREMETDDLRTYLTEYQHEKN 110

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +  +       +   F W   + Y+  +P   + + K        +T E +++ +    
Sbjct: 111 SSKVTVDNIRRILSSFFSWLEDENYILKSPARRIHKVKAALTIKETYTDEALEKMRDSC- 169

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLA 246
           E  +     + L  +G+R  +        +                  V         L 
Sbjct: 170 EEPRDLALIDILASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMVYFDARTKIHLL 229

Query: 247 MTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
               G+               +++         +    K  + K   H  R+  AT++ D
Sbjct: 230 TYLQGRTDDNPALFVSLRAPHERLKIGGVECRLRELGNKLDIEKVHPHKFRRTLATMAID 289

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    +L    G K +D    Y 
Sbjct: 290 KGMPIEQLQQLLGHKRIDTTLQYA 313


>gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 286

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 81/263 (30%), Gaps = 11/263 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           LI  Y+        ++ +   +    ++  + +      ++T + ++   E     + P+
Sbjct: 10  LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKK---EVTKELVKLYKEELMKSYKPT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    L ++   F++        I      +R   +        +       +   +  +
Sbjct: 67  SINSMLAALNQFFEYNG-WLECKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQKNER 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  + +  +G+R  +     VQ L++    I  +     I        + L       
Sbjct: 126 LYVLLQAICSTGIRVGEHRYITVQALKDGYAQIYNKGKVREIFFSDDLKRILLKYCHKNK 185

Query: 252 KET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
            E    F+    + ++ +      K     A V +S    H +R   A    +       
Sbjct: 186 IENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNLKKDIAR 245

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           L    G  ++D    YT  + R 
Sbjct: 246 LADLLGHSSMDTTRIYTMSSGRE 268


>gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218]
          Length = 341

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 95/338 (28%), Gaps = 28/338 (8%)

Query: 22  IYYFRKG-HGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
            +  R G  G+R    +          +           +     +    T++    +  
Sbjct: 2   RWIVRLGWKGKRYYESFGTCPEMKFAEFNQLAYQFIADVQSGAYQKGSRMTVQQFFDD-- 59

Query: 80  KSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQ 135
                   + N     +++     +++   G      +T + +   + S    + +S  +
Sbjct: 60  ---VVLPYSRNHHRDSKTFLSRSKRVMAAFGKERVTDVTRRDVERFLNSLTDLSHASINR 116

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +   +  LF  AV  E +  +P   V++        R  + ++ + F            A
Sbjct: 117 YHAFLSKLFSMAVEHEIIDKSPVKGVKKRVENNAKDRVLSSKEAESFCRNACAEPNFLHA 176

Query: 196 F--EFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT--- 248
                 L +G+R  +        L +++ S      K+G    +   +   +L+      
Sbjct: 177 SALMLSLLTGMRIGNVMSLTRAMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLKV 236

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGAT 303
                      N  +            +    + G      + H +R+  AT    A   
Sbjct: 237 SFNDWVFPSLNNRGEHIAYPRACMERIQQAMKQEGCLDAPFTIHDLRRTYATQMLLATND 296

Query: 304 AHELMATYGWKTVDQAETY-----TKGADRIRLGIKNS 336
                 + G   V+  E Y     T  A   +  +   
Sbjct: 297 IRLAQQSLGHSNVNVTERYAYYQNTHLAQASQQTVDAM 334


>gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87]
 gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 392

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 91/284 (32%), Gaps = 21/284 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK---SGDFDYRKITTKHI 119
           KK  TL  L+  Y  +   G L   +  ++   E+Y    +++     D   ++I  +  
Sbjct: 98  KKHYTLTQLLD-YHSTKMKGVLKYGTLKNYTTTETYLKNYLKEKRTISDIYLKQIDYQFT 156

Query: 120 RSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                  +  PS +       +   + L   +   +++  NP    +      + +    
Sbjct: 157 LGFERFLRDLPSLSNNGVMKHMERFKKLMHLSEDLDWIEKNPTKRFKLRFHHVDMVYLSK 216

Query: 176 KEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQK 228
            E  +  +  +   +    R  F F  Y+GL   D      +H+Q           +  K
Sbjct: 217 AELQKIKEKKFKRSTLSINRDIFVFCCYTGLPYGDVLELKKKHIQIGIDGKKWIYTRRMK 276

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
           T T++ + L +   ++L            +      +  + + + +       +NK  S 
Sbjct: 277 TNTLLRIPLLEEAERILEKYKEHPRVSNSDILLPVYSNQKTNQYLREITKAVKINKELSF 336

Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H  R   AT      G     +    G   +   + Y +  D  
Sbjct: 337 HAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSK 380


>gi|197284356|ref|YP_002150228.1| integrase [Proteus mirabilis HI4320]
 gi|194681843|emb|CAR41137.1| integrase [Proteus mirabilis HI4320]
          Length = 333

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 13/325 (4%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
             +  LPP +   +     I YY      +   +          A  + L    PK   +
Sbjct: 7   AKNKGLPPNLYLRK----GIYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKESLV 62

Query: 62  NSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +        TL   +  YR   +   L   +   +ES    I     D     +T + + 
Sbjct: 63  DRINNVHCVTLHEWLDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVA 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + +       + A    ++M   F  A+    +  NP    + P + +      + E+ +
Sbjct: 123 TFISEYPKK-AMAKLLRSTMLDAFNEAIADGVIKENPVSVTK-PPKTSVQRSRLSLEEFK 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                     + R  F   + +  R SD        ++N+   +   KTG+ + + L   
Sbjct: 181 YALEHT--NDKYRHMFLLAVLTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLR 238

Query: 241 FMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKA-TKAGVNKSAHGVRKFSATIS 297
              +               +       A      F            + H +R  SA   
Sbjct: 239 LESIGYSIKDVLNLMNRSSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIRSLSA-RL 297

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
            +   +A       G K++   + Y
Sbjct: 298 YEEEKSAEFAKKILGHKSMRMTDKY 322


>gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
 gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483]
          Length = 405

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 100/353 (28%), Gaps = 28/353 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSPRKKPTT 70
            K+R R    +Y ++       R                 +             +++   
Sbjct: 59  KKDRKREALKLYLWQAPRTPLERQQNKETLELAKKIRFERSQELLENITGYRLRKERKVN 118

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSG 122
                  Y                 +    + I                 +IT   +   
Sbjct: 119 FLDYFQAYNDRYTKKD-----VRMMKGVLTRFIDFLKIEYPQYSTYIKPEQITKDMVSLF 173

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKE 177
           VE    +     A+ + +  + +  +AV  + +A NPC  V     K    +      + 
Sbjct: 174 VEYLQSRSKGEGALDYYSKFKKVINYAVDNDVIAKNPCKGVVCKCDKQVLRKDVLSLEEM 233

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTII 233
                  + +E  + R AF F LY+G+R  D       ++  +     F     K  +  
Sbjct: 234 QALISTHYDNENPEIRRAFIFCLYTGIRFCDVQDLKYSNVDYSNKILSFEQNKTKGHSAN 293

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNK--SAHGVR 290
           +  +      LL +        +      +  +AT      +    +AG+ K  + H  R
Sbjct: 294 SGVVIPLNDDLLQLIGEPHTEQYEQETIFRLPSATMCLKALRRWTKRAGITKHITWHCAR 353

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              A    + GA    + +  G   +   E YT+  D ++        +  + 
Sbjct: 354 HSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEA--AINSLPKLK 404


>gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
 gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC
           29799]
          Length = 503

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 97/331 (29%), Gaps = 49/331 (14%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           + F  A         P         + P      I E+ +     S+ + +  S+ +   
Sbjct: 147 AAFQYAVELTWLKENPVAHINPCADEAPILFTDFILEWLEMMK-NSVELTTYSSYANSIK 205

Query: 101 -QIIRKSGDFDYR----KITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEY 152
             I+    D        +   KHI+   +       +A        ++R   ++A +   
Sbjct: 206 GSIVPYFKDKMLTLQDLEKHPKHIQDYYQFELGKGLTANTVIHRHANIRKCLQYAFQIGL 265

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +  NP   VERP++       + +++++       +G    L      + GLR S+    
Sbjct: 266 IKSNPADRVERPRKDKYLATIYNQQELEI-LFKTVKGDPIELGVILAAFYGLRRSEVVGL 324

Query: 213 GVQHLQNNI---------------------FSIKTQKTGTIITVELPDGFMKLLA----- 246
               +                            +T+   +  T+ L   F +LL      
Sbjct: 325 KWDAIDFEKKTISIKHTVTQVNVDGKNITVQKDRTKTKSSYRTLPLVPPFEELLRRLKQE 384

Query: 247 -----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                            +  ++N   + +     +  F+      G+ K   H +R   A
Sbjct: 385 QLVNQKVCGAAYCKKYLDYIYVNAMGELVKPNFITQHFEIVLKNHGLKKIRFHDLRHSCA 444

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK 324
           ++    G +  ++    G   +      YT 
Sbjct: 445 SLLYANGVSLRDIQEWLGHSDIGTTSNIYTH 475


>gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
          Length = 283

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 8/255 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA 133
           + +++ +      +  +   +    +       +     K  T   +  +  R +  SS 
Sbjct: 12  VEQFKWNLMEQERSEATIEKYIRDINAFFEWLPEGKRVDKPVTIAYKQSLLERGYASSSI 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + ++   F ++  +        L ++     +E  +   +E  +   +   +  +  
Sbjct: 72  NSMVAALNSFFSYS--EWGDCRIRPLRIQAQTMVSEERKLTKEEYKRLLHAAKEKNERLY 129

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPIG 251
           L  + +   GLR S+     V+ +      +  +     +    +L     K      + 
Sbjct: 130 LVMQSICSVGLRVSELKFLTVEAVHRGRTVVNNKGKMRTVVLPPKLCLILKKYCRRQRVT 189

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELM 308
             + F++   + ++ +      K  A  AGV       H +R   A++  +      +L 
Sbjct: 190 GGSIFVSRTGRPLDRSNIWSAMKELAKAAGVAADKVFPHNLRHLFASVYYERFQDIVKLA 249

Query: 309 ATYGWKTVDQAETYT 323
              G   V+    YT
Sbjct: 250 DILGHSNVNTTRIYT 264


>gi|296447605|ref|ZP_06889525.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296254870|gb|EFH01977.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 471

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 109/382 (28%), Gaps = 52/382 (13%)

Query: 14  ERTRHGKIIY--YFRKGHGRR------IRLPYPHESTFIPAYMSAL-----TGSTPKREY 60
              + G   +   +R   G R      + +      T   A   A        S      
Sbjct: 37  RVEKSGTKTFIIRYRTDGGGRSAPRRFLTVGRFGALTVEQARKKAKVLLGAAASGNDPAG 96

Query: 61  INSPRKKPTTLKWLISEYRKS--------AHWGSLAVNSRI-SFESYFDQIIRKSGDFDY 111
               +++  T++ L+  Y K              +   ++  +     + +    G    
Sbjct: 97  EVQEKRREKTMRELLDFYEKHGCFIQRGIHKGKPMKPLTKQYTMARLRNHVEPLLGHRRA 156

Query: 112 RKITTKHIRSGVESRKHTPSS-------------------AIQFLTSMRVLFKWAVRQEY 152
            ++T+  I + V       ++                   A + +  +  +F +  R  +
Sbjct: 157 SEVTSGDIETFVADVTAGKTAKDEKVGPRKRLIVRGGEGAARKVVRDLSAVFSFGGRHGF 216

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRC 206
           V  NP       K      R  T +++ +    +          +          +G R 
Sbjct: 217 VTKNPVEDASVRKTDNRRERFLTLDEVSRLGEAFDTVEKEGANPKGVAIARLWALTGCRR 276

Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           ++        ++  +N+F     KTG  I    P     L  +   GKE +    +K   
Sbjct: 277 NEIAALKAHEVKLGSNLFEFDDTKTGKSIRPFGPAAAALLQRLLKDGKEGYLFPAEKGDG 336

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +      A +   + H +R    + +  +G       A  G   +     Y 
Sbjct: 337 YYQGTRNVWAEVTKLASLPGVTPHTLRHTLGSTATSSGEALALTGAILGHANLRSTAIYA 396

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
               +    ++ ++R+  ++ +
Sbjct: 397 HV--QRDPSLEAAKRVEKLLAA 416


>gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 404

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 96/348 (27%), Gaps = 43/348 (12%)

Query: 31  RRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLA 88
            R           + A       G T         R+   +    +S Y +        +
Sbjct: 52  PRDSASRNTAPRDMTARRETGARGDTGVSRAAGVCREAEVSWDVAVSAYLRHLATERDRS 111

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMRV 142
             +  ++ +    +   + +      T       +   +G+ +R    ++  +  +  R 
Sbjct: 112 PETVRAYRADLAHLRGYAQEVGLDGPTGVDLGVLRGWLAGMRARGAAATTLARRASVARG 171

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------ 190
              +A RQ ++A +    +  P+R        T     +  +                  
Sbjct: 172 FSAFAARQGWLAADVAERLAGPRRPASLPTVLTAAQAWELLAARPRPLPDGGDPPAAGQS 231

Query: 191 ---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240
                    +     E L  +  R S+ C   +  + +    ++ +  G     V     
Sbjct: 232 AAGQSAVVVRDDAVLELLYATATRVSELCGLDIDDVDDERRLVRVRGKGGRERAVPFGVP 291

Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHG 288
             + L                    F+    ++++         A+   A G+   S HG
Sbjct: 292 AQRALRNWLAAGRPTLAVAGSGRALFLGVRGRRLDPRTVRRILAARTATADGIGPISPHG 351

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           +R  +AT     GA    +    G  +    + YT     R+R   + 
Sbjct: 352 IRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQRLRAAFEQ 399


>gi|284800918|ref|YP_003412783.1| integrase [Listeria monocytogenes 08-5578]
 gi|284056480|gb|ADB67421.1| integrase [Listeria monocytogenes 08-5578]
          Length = 383

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 109/351 (31%), Gaps = 43/351 (12%)

Query: 21  IIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
             Y   F+K +G+  R+    +         A +    K        +  T       E+
Sbjct: 10  WSYRISFKKENGKYGRINSDKKYRTKKEAQLAESAIKNKLSKGFHLDEGETLFTDYFEEW 69

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQF 136
            K    G L++ + +   S  + +         + +T K  +  +       ++A   + 
Sbjct: 70  FKIYKKGKLSIENDVDINSTLNFVKANFDGIKLKNLTRKKYQEVLNKYGEERATATVKKK 129

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKED----MQQFKSFWSEG 189
            T MR   K AV++  +  +P   V        + E  +  T++      +   +     
Sbjct: 130 HTYMRACIKDAVQEGVIYKDPTYRVRAIGNAPTQKESEKFLTEKQLIILTKNLMNTHKVE 189

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIIT 234
              R    F + +G R S++       +     S+   KT                +  +
Sbjct: 190 YTSRNIIFFQIATGCRFSEALGLTWDCVDFEKKSVIINKTWDYKYTKFFSDTKNFSSKRS 249

Query: 235 VELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           + + +  ++LL               +       F   +  Q ++    +   K    K+
Sbjct: 250 ITIDEKTIELLREIKLEQTKFELKKNIRNKHNLVFCSFDSFQVVSNNAVNKTLKKFCEKS 309

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           G+    ++H +R   A++          L    G  ++    +TY+   D 
Sbjct: 310 GITPSITSHALRHTHASLLLFKNVNIKYLSKRLGHNSITTTLQTYSHIIDE 360


>gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319]
 gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319]
          Length = 408

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 94/364 (25%), Gaps = 41/364 (11%)

Query: 11  VTKERTRHGKII-----YYFRKGHGRRIRLPYPHESTFIPAYMSAL-TGSTPKREYINSP 64
           + +E  R  +       Y ++       R                         E     
Sbjct: 53  LDREVARKDRKREFLKLYLWQAPRTPIERQQNKQTLELAKKIRFERGQELLENVEGYRLK 112

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFD----------Y 111
           +++         +Y            ++           +      D             
Sbjct: 113 KERDINFLDYFQDYIDKY--------TKKDIRMLNIALRRFKDFLNDTPEYKKFTKRITP 164

Query: 112 RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            +IT   I +  E  +       A       + + K+A+  + +  NPC  +        
Sbjct: 165 EQITKDMIEAFTEYLQGRSVGEGAKSIYARFKKVIKYAIEHDVITKNPCNGIVIKVDDQI 224

Query: 170 GIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NI 221
             +      +           +  + R AF F LYSGLR  D       ++         
Sbjct: 225 LKKDVLSLDEIQQLIATHDERQNPEIRRAFIFCLYSGLRYCDVKDLTFANVDYSNKLLKF 284

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              KT+   +   V +P     L  +          +      +        +     AG
Sbjct: 285 EQSKTKGHSSSSGVIIPLNDGLLRLIGEPTPAQTKDSYIFNLPSYEMCLKSLQRWVKSAG 344

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +NK  S H  R   A    + GA    + +  G   +   E YT+  D ++   +    +
Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAIDSLK--QEAINSL 402

Query: 340 SSVV 343
             + 
Sbjct: 403 PELK 406


>gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1]
          Length = 403

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/402 (10%), Positives = 108/402 (26%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNNSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHYS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
           + +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNI 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 NIENKTLEIDGTINWVTDAETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N K               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D+  +      ++  +
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHITDQ--MSKDMMNKLEEI 402


>gi|260890722|ref|ZP_05901985.1| putative integrase-recombinase protein [Leptotrichia hofstadii
           F0254]
 gi|260859600|gb|EEX74100.1| putative integrase-recombinase protein [Leptotrichia hofstadii
           F0254]
          Length = 354

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 101/334 (30%), Gaps = 25/334 (7%)

Query: 14  ERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  R              +R  L Y            A            +        K
Sbjct: 17  KINRTNPFRVRVTNPVTKKRHSLGYFSTKK------EATEILNKYFNNPYNLENHRIKFK 70

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L   ++ S     +A N+  S+ + F +  ++  +  ++ I+T  +++ +     + S+
Sbjct: 71  DLFELFKNSKKDI-VAKNTLNSYINSFKR-CKELHNLVFKDISTPILQNLINDLNCSIST 128

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +++ + +A   + +  N    +  PK      +     D  +      +    
Sbjct: 129 KSITKGFLKIFWDYAREIDILEKNRAEFINLPKETEIKEKNPFNYDEIEKLWENKDIIWV 188

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLA--- 246
           +     ++Y+G+R  ++     +++      I            ++ +     +++    
Sbjct: 189 KFI-LIMIYTGMRIEETVELKKENVDLQEGFIHGGNKTKKGKNRSIPIHKDIFEIIKELY 247

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297
                   +           N+ + +    F   F        +NK   H  RK  AT+ 
Sbjct: 248 ENSPTDYLIYNDKWIFSKKKNENKPLRKNYFHEKFYETLKTLKINKHKPHDCRKTLATLM 307

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           ++       +    G + +   + Y    D+ +L
Sbjct: 308 SNQKINNIVITDIMGHENIATTKQYYIQTDKQKL 341


>gi|225874710|ref|YP_002756169.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792190|gb|ACO32280.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 393

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/372 (11%), Positives = 106/372 (28%), Gaps = 39/372 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ ++    G  ++  R   G   R      +  + +   A   ++     IN+  +  
Sbjct: 12  GWIVRKARSKGSDVWVLRWRDGDTNRSTTLGTTQQLRSRAEAQRAASKLTAEINNSIEVA 71

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI--TTKHIRSGVES 125
            T   L++ Y + A       ++     +  + +++ +  +     +      +   ++ 
Sbjct: 72  -TFGQLVARYLQEAIPER--ESTAAPLRAMLNARLLPRWENVRISDMAKDPMMVEQWIKG 128

Query: 126 RKHTPS------------SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGI 171
            +  P             S +   + +  LF++A+R  Y     NP   +E         
Sbjct: 129 LQSKPRRKGEKPRDLSPKSKLHTRSVLHRLFEYAMRWRYLDCQRNPMSLIELRGTTRRVR 188

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +     Q ++   +     RL     + +GLR S+              ++   ++  
Sbjct: 189 PIYLLTPQQYYQILANLAPHVRLMAVLAMNTGLRISEILGMRWTDANFEERTLTISRSIV 248

Query: 232 IITVELPDGF--------MKLLAMTPIGKETFFINNDKQ---------KMNATQFSI-WF 273
                              ++L       +      +             +A+       
Sbjct: 249 GRHEGETKTMASADVLPLHEMLVQELRAWQAREDGVNGWLFGNLDTGRPYHASSLRNDHL 308

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                KAG+     H  R        D+GA            ++D    Y + A      
Sbjct: 309 APAGRKAGIPNLGWHNFRHTYRARLGDSGAEPEVQQRLMRHSSIDMTMKYGQNAMLKLTR 368

Query: 333 IKNSRRISSVVD 344
             N++ +  ++ 
Sbjct: 369 PANAKLVEELLA 380


>gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320]
 gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320]
          Length = 330

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 91/292 (31%), Gaps = 35/292 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT-- 129
            Y +S      +  SR +  S+   + +  G        +  +   HI++ ++       
Sbjct: 42  AYLRSLG----SKRSRQTMGSFLTIVAKMIGFSSIKHCQWGALRRHHIQAIIDMLSDADK 97

Query: 130 -PSSAIQFLTSMR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            P++   +L +++          L      Q    +        PK +            
Sbjct: 98  APATINTYLAALKGVALEAWAMKLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIRALFR 157

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQ 227
              K   S+G +       LL  GLR S+      +H+Q    +                
Sbjct: 158 CCEKDHSSKGLRDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMP 217

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           +          D            +   F +   +++         + +  ++G++K + 
Sbjct: 218 EDTWERVQLWIDEIRGAQDGALFTRIRRFDDVTDERITDQAIYYILETRQQESGIDKFAP 277

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
           H +R+  A+   D G     +    G  ++   + Y  +G DR+R   ++ R
Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRLRKAARHLR 329


>gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
 gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC
           27560]
          Length = 426

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/411 (11%), Positives = 105/411 (25%), Gaps = 80/411 (19%)

Query: 1   MTPSLRLPPFVTKERT-----RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M    +        +      + G+  Y ++   G R  +   +    +           
Sbjct: 14  MEKKRKDSRGRVLRKGEAFREKEGRYSYEYKDTFGNRKTI---YSVDLLKLREREKQIER 70

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
              + +N       TL +L   Y  +    +L  N++++++  + + +    G      I
Sbjct: 71  DISDGLNMYVAGKATLNYLFERYMDTK--YNLRENTKVNYKYMYDNYVRNTIGKRLIADI 128

Query: 115 TTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPK 165
               I    +S          +     T +  +F  AVR + +  NP         +   
Sbjct: 129 KYSDIVYFYKSLITEKGLELNTVDTIHTVIHPVFSMAVRDDVIRKNPASGVLADIKKESG 188

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQNNIF 222
           +        T E  + F  +  E  Q           L +G R  +      + +     
Sbjct: 189 KNKGIRHALTIEQQRVFMKYMIEEEQFNHWIPIFTILLGTGCRVGEFIGLRWEDVDFKQK 248

Query: 223 SIKTQKTGTIITVELPDGFMK------------LLAMTPIGKETFFINNDKQKMNATQFS 270
            I    +   +     DG               +  +    +       +  +     FS
Sbjct: 249 VISINHSIAYVCYGKEDGRKSHYAISLPKTEAGIRYIPMTDEVYDVFKAEYYRQQENGFS 308

Query: 271 ---------IWFKAKATKA--------GVNK--------------------------SAH 287
                      F  +  +         G+ +                          + H
Sbjct: 309 QFSIEGMSGFIFTNRCGRIYNQQTLNKGLKRISENYNQKELIDAKKQKREPIILPHFTCH 368

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNS 336
            +R   AT   ++ +    +    G   ++     Y +      +  I+N 
Sbjct: 369 QLRHTFATRLCESTSNLKAIQDIMGHANIETTMDIYAEATVGTKQKAIENL 419


>gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886]
 gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886]
          Length = 346

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 89/320 (27%), Gaps = 27/320 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            Y +   G+R+R           ++          + ++   + +  TL+ L   + +  
Sbjct: 18  CYPQGSKGKRVRKR-FATKGEALSFERYTMEEANAKPWLGQ-KTESRTLRQLADLWFRLH 75

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------------ESRKHTP 130
                +     S      Q I + G+   R  T K+                 + ++   
Sbjct: 76  GQHLTSGA--KSLNR-LHQAIDELGNPLARDFTAKNFLHWRSLRVNRYAAQHGKDKQAAA 132

Query: 131 SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++    L  ++ +F +     E+   NP  SV++       +   T+++++     + + 
Sbjct: 133 ATHNVDLALLKGVFNFLISADEWHLPNPLASVKKLASDQAEMTYLTEDEIRLLLGSFEKA 192

Query: 190 SQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           +      L  +  L +G R S+        +     +    KT    TV + +     L 
Sbjct: 193 TYKASYLLVCKLCLATGARISEIENLTRSQVSQFKVTFTKTKTKQNRTVPISEELYLELI 252

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                                           +    +  H  R   A+     G     
Sbjct: 253 RYDEEHGLPVQPV------RKMLEKRLAKWFPRLPDGQKTHVFRHTFASHFMQHGGDILT 306

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G   +     Y   A
Sbjct: 307 LQRILGHANIQMTMKYAHFA 326


>gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 417

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 26/304 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-RKSGD--FDYRK 113
              +  P  + T +   +  Y +       LA  +R S      +++  + G+   D   
Sbjct: 108 EGVVAPPTMRTTPVDEELRRYDEHMDHIRGLAPKTRSSALRIVRRLLVTRFGEDEIDVAA 167

Query: 114 ITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-- 168
           +   H+R   +        P++A   + ++R  F++             +V  P      
Sbjct: 168 VRPDHVRRFFAQQAKLYSKPANAGTVVAALRGYFRYRASLGDAVHGLIGAVSYPANWQLA 227

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  T E+++Q      +  +            L  GLR  +  R  +  +     +I
Sbjct: 228 SLPKTLTTEEVEQLVGSLGQAGRSLRRADAIVRCALDLGLRSGEVARLSLDDIDWRAGTI 287

Query: 225 KTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWF 273
             + T                     L           I         Q           
Sbjct: 288 TVRHTKGRHDDVLPLPVTTGAAIAAYLKHERPKTHNRAIFVRHVAPRDQPAGPDLVRKTI 347

Query: 274 KAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +    +AG+  + +H +R   A      GA+  E+      ++++    Y K  D  +L 
Sbjct: 348 RQAFKRAGLPYTRSHLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAK-LDSRKLA 406

Query: 333 IKNS 336
               
Sbjct: 407 EVAL 410


>gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
 gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium
           moorei F0204]
          Length = 307

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 89/283 (31%), Gaps = 36/283 (12%)

Query: 90  NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           ++  +++    + I    GD    ++  + ++  V  +        +    +  ++++ K
Sbjct: 25  STYAAYQLLIQNHIKPYFGD--LYEVNEEKVQQFVFDKLDAGLSEKTIRDIIIVLKMILK 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGL 204
           + ++  Y+           K++ + +   +K D ++F        +   L     L +G+
Sbjct: 83  FGIKNGYLEYVQIDVKFPSKQEKKDLDVLSKADQKKFMEHLRNNFTFKNLGIFICLSTGM 142

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------------ 246
           R  + C      +      IK + T   I +   +     L                   
Sbjct: 143 RIGEICGLRWCDVDTAEGVIKVRHTLQRIYIIEGETRHTELLLDTPKTANSVRDIPMSSE 202

Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                      + +  + I+ND + +    +  ++K    +  +     H +R   AT  
Sbjct: 203 LLKMLKSLNKVVNENYYVISNDIKPIEPRTYRNYYKKLCKQLDIPELKFHSLRHSFATRC 262

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338
            ++ A    +    G   +      Y     ++ +  I    R
Sbjct: 263 IESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDKMLR 305


>gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 439

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/390 (11%), Positives = 93/390 (23%), Gaps = 66/390 (16%)

Query: 14  ERTRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTP-----KREY 60
                G   +               +RI L      T   A   A               
Sbjct: 36  RVGPSGDKRWQVEYRPYPGGRGVAIKRITLGSTTVLTPDQARDQAKETLAAVSNGKDPVA 95

Query: 61  INSPRKKPTTLKWLISEYRKS------------AHWGSLAVNSRISFESYFDQIIRKSGD 108
               ++    +  LI  Y +                 +    +          ++   G 
Sbjct: 96  EKQVKRDEDKISDLIDLYEQKGCTVRRGDQLLPMKPRN-KAYTIAGLRH---HVVPLIGK 151

Query: 109 FDYRKITTKHIRSGVESR-------------------KHTPSSAIQFLTSMRVLFKWAVR 149
               ++T++ I   V                      K    +A +   ++  +F +AVR
Sbjct: 152 KRISEVTSRDIEQLVADITAGKTAKDEKIGPRRRIIVKGGAGAARKVARNLSSVFSFAVR 211

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSG 203
           ++ +A NP    E  K   +  R    E++ +               +          +G
Sbjct: 212 RKLIAQNPVTDAEINKVDGKRTRYLFLEEIGRLGKALDELEAEGVNPKALDIVRLWALTG 271

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINN 259
            R  +        +  ++  +    T T              +  L            + 
Sbjct: 272 CRRDEIAALKWSEVNIDLGCLVLDDTKTGKSVRPLAAPAAALLAALPRYADADRPEGRSK 331

Query: 260 DKQKMNA-----TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313
                +            +     KAG+   + H +R    + +   G     + A  G 
Sbjct: 332 WVFPASRGDGHFQGTKRIWPKVTKKAGLPGVTPHVLRHSLGSAAVSGGMALPMVAAILGH 391

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVV 343
                 + Y     ++    K + R  S +
Sbjct: 392 ADTRSTQIYAHV--QMHPAAKAATRAVSGI 419


>gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA]
          Length = 352

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%)

Query: 74  LISEYRKSAHW------GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRS 121
           L+  +R+            +   + + +E     +           D  +R I  + +  
Sbjct: 58  LLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFVEK 117

Query: 122 GVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                K   + A      +L  ++ +   A+  +++  NP   ++  + +T      T+E
Sbjct: 118 FEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLTEE 176

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++        +  +    R  F F   SGL  +D      +H+  +I      +     T
Sbjct: 177 ELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKT 236

Query: 235 VELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +    +      ++            N      +  + + + K  A   G+    + H
Sbjct: 237 NNVCHIPLLDIPAMIIEKYRKNPVCLQKNMVLPVPSNQRMNSYLKEIADVCGITKKLTTH 296

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             R   A  +     +   +    G   +   + Y K  D
Sbjct: 297 IARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 336


>gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 403

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 91/388 (23%), Gaps = 74/388 (19%)

Query: 1   MTPSLRLPPFVTKERT--RHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M         V +  T  R G   Y  R     G+R+ L            M A      
Sbjct: 1   MAKKQ---ENVPRYGTAMRRGIQYYRTRITDADGKRVDLYAETCEELQLKEMEARRQVEE 57

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
                  P     T+     ++        ++  +   +    +  I++  GD     +T
Sbjct: 58  AVFRRKHP-----TVAEYCEKWLL-MQSAKVSSGTLRGYTQTMNNYIVKPLGDMYLEDVT 111

Query: 116 TKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
              IR  +      +     +    ++ +F  A R + +  NPC  +     K       
Sbjct: 112 ADDIRLAMIPLASKSAGLYSKVNMLLKCVFYSAERSQLLEYNPCEGLSAKGGKPGKKINA 171

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             ++  +       G  P       LYSGLR  +        +  ++ +          +
Sbjct: 172 LTDEQVKLLLDTVRGLPPYTFIMIALYSGLRREEILGLQWDCVFLDVPTPYISVRRAWRS 231

Query: 235 VELPDGFMKLLAMTPIGKETFFINN---------------------DKQKMNATQFSIWF 273
                     L      ++                           +   ++++QF   +
Sbjct: 232 EHNRPVISTTLKTKAARRDIPIPKCLTDCLREVKEKTESEYVVADRNGNPLSSSQFQRVW 291

Query: 274 K-------------------------------------AKATKAGVNKSAHGVRKFSATI 296
           K                                             + + H +R    T 
Sbjct: 292 KYVTVRSTKPHNYYKYVNGQCVKCTVTPTPGSHQKNNPKLVYAIDFDVTPHQLRHTYITN 351

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYT 323
              AG     +    G +        Y 
Sbjct: 352 LLYAGIDPKTVQYLAGHENSKTTMDIYA 379


>gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3]
 gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3]
          Length = 295

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 89/278 (32%), Gaps = 21/278 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVES 125
           + L + Y         + ++  S+ +  +  +    +  +  IT                
Sbjct: 6   RNLANRYLNFLSAR--SKDTLKSYRASLNIFMNFFQEKSWETITIDDALFFYNNYRSHNG 63

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    S+ I+ LT +   ++WA+  +Y+  NP     R  R     R    ++  +    
Sbjct: 64  KPIQISTTIRRLTDVNRFYEWAIENKYLINNPLKLYVRTLRPQLKERQCLSKNQAKLLLS 123

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             E     +   FL+ +G+R S+          L +    IK+ K      V + D  + 
Sbjct: 124 KIEDYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLL 183

Query: 244 LLAMTPIGKETFFINNDKQKMNATQF----------SIWFKAKATK-AGVNKSAHGVRKF 292
            +      +E      D+  +    +            + +  +     +  + H +R  
Sbjct: 184 HIKQYLKYREFLNPKIDRLFLTKGGYKLSEGQISDYRRYLRTISKDILNIIVTPHVLRHT 243

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             T++ ++      L    G   V+   TY   +   R
Sbjct: 244 FGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFR 281


>gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
 gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514]
 gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561]
 gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513]
          Length = 290

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 77/240 (32%), Gaps = 19/240 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           +  S+     Q +    + ++    +    I + +   K      ++  + L+S++  + 
Sbjct: 23  TLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYH 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
           +   ++ +  +P   +  PK + +     T E +    S       +G + +   E L  
Sbjct: 83  YLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +GL+ S+     ++ +  +   +  +       + +    ++ L              + 
Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSHAIEALKNYIEKGRKAKNGENT 201

Query: 262 -------QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYG 312
                  +K+         +    K   G   + + +R+  A      GA    +    G
Sbjct: 202 LFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLG 261


>gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 294

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 91/292 (31%), Gaps = 26/292 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESR----K 127
           I+ +         +  +   +++  ++  +      +    + T   ++   +      K
Sbjct: 2   INSFILEYQKQDRSPLTVAGYQTELEKFQQWLWTTVNEPLERATDMDVKDYKQYLLTVKK 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180
             PS+  + L  +R  + WAV Q  +  NP  +V+  + +    +   + D         
Sbjct: 62  QKPSTVNRGLKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLKRAVL 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVE 236
             +    + ++       +L +GLR ++     +  +  +       ++  K      V 
Sbjct: 122 NDEHNAFKRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKYAEVP 181

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKSAHGV 289
           L     + L      ++T   ++           +         +  A K+ V  SAH +
Sbjct: 182 LNKDVRQALNEYLDIRKTVKCSDSTFLFLGERGPIKKRAIQFRVEKYAGKSSVKASAHQL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340
           R        + G   + +        V+    Y T     +   ++    + 
Sbjct: 242 RHTFCKELINHGEPLNVVAHLSRHSDVNTTMRYITPSESELSHAVEKISVLE 293


>gi|304397761|ref|ZP_07379638.1| integrase family protein [Pantoea sp. aB]
 gi|304354933|gb|EFM19303.1| integrase family protein [Pantoea sp. aB]
          Length = 392

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 105/344 (30%), Gaps = 26/344 (7%)

Query: 8   PPFVT--KERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P  +   + R R +G      R G GR   +        +  Y + +      +  +   
Sbjct: 34  PKGIVSFQYRYRINGN---QHRLGIGRYPAVSLRDARIKVGEYKALIADGIDPKHQLVVK 90

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSG 122
           +KKP T+   I  +  +    SL  ++   +E    +++ +   D     I  +  +   
Sbjct: 91  KKKP-TVHECIKYWYDNYVLQSLRKSTAEVYERIVLNEMEKYFADIPIEHIPVSAWVDFF 149

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            E  +  P  A + L  +R    W  R++++  +  L +   +         T    +Q 
Sbjct: 150 TEQEQANPLKARKLLVHLRGAIAWCSRRQFIEDSSLLRLNPKEFGRNPKTGDTVLTYRQL 209

Query: 183 KSFWSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
              W E  +       ++  + L+  G R S+   +  +               +     
Sbjct: 210 AKIWVENEKSTATFSSKMLIKSLILYGSRNSELRESRKEDFDFEEGIWTLPSDRSKTNKI 269

Query: 237 LPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +     K +                         ++    + + +    +    + +AH 
Sbjct: 270 IRRPIFKQIEPLLKQSIDNGNGLLFHGAFERDVPLSIGSSTRYVRLLRDQLNFGDFTAHD 329

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRI 329
            R+  AT  A+ G   H +    G         Y K    A++ 
Sbjct: 330 FRRTMATRLAEEGIAPHVIEKMLGHDLGGVLAVYNKHDWLAEQK 373


>gi|320449745|ref|YP_004201841.1| transposase [Thermus scotoductus SA-01]
 gi|320149914|gb|ADW21292.1| transposase [Thermus scotoductus SA-01]
          Length = 391

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 112/373 (30%), Gaps = 55/373 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIR-----LPYPHES-------TFIPAYMSALTGSTPKREY 60
           + R + G  ++Y   G G+ +       P                    AL      +  
Sbjct: 2   RRRGKGGGSVFYHE-GKGKWVAQLTWVDPATGRKVKREKHCETRKEAERALADMVAAQAK 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111
                    T +    EY K      L  NS           +            G    
Sbjct: 61  GLLTDPSRLTTRDFALEYLKRLEREGLRPNSIRLALDELAHALPSLKDPKAHDPLGRMRL 120

Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA NP  +V+    K 
Sbjct: 121 QEVKPVHVRAAVDRVVEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVKVRLPKG 180

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           E      +          +E S+ +   L    +L +GLR  ++     + +      + 
Sbjct: 181 EKAARALEPHEVARLLEAAEASRSKDMALLLRLMLETGLRRGEALALQWRDIDLEAGELT 240

Query: 226 TQKTGTIITVELPDGFMK-------------------------LLAMTPIGKETFFINND 260
             +    +         K                         L  +TP   +  F+   
Sbjct: 241 VGRAWVKVAGRGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLARLTPEEVDGLFLVGG 300

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
            + ++   F+ + +  A +AG+ +   H +R   AT++   G     +    G  +    
Sbjct: 301 VKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPTIT 360

Query: 319 AETYTKGADRIRL 331
              Y    +  R 
Sbjct: 361 LNVYRHLLEEERR 373


>gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
 gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061]
          Length = 338

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESR---KHTPSSAIQFLTS 139
           +  SR + +S+ + + +  G  + R  T       HI++ +E        P++   +L++
Sbjct: 57  SKRSRQTMKSFLNIVAKMLGYQNVRDCTWGAMRRHHIQAIMEMLSDAGKAPATINTYLSA 116

Query: 140 MRVL---------FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +               Q    I        PK +                   ++G 
Sbjct: 117 LKGVALEAWTMKQLDTDNFQHIKQIRSVRGNRLPKGRALERYEIKTLFFTCENDVSTKGL 176

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +       LL  GLR S+     ++H+     +++            +P+G    L    
Sbjct: 177 RDAAIIGVLLGCGLRRSEIVSLDMKHIIRREQALRVMGKGNKERLSYMPEGTWDRLTRWV 236

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                        +     +    +++        + +  ++GV K + H +R+  A+  
Sbjct: 237 DEVRGDHAGPLFTRIRRHDDVTDNRLSDQAIYHILETRRIESGVEKFAPHDLRRTFASAM 296

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  ++   + Y +  D R+R   +N  
Sbjct: 297 LDNGEDIVTVKDAMGHSSITTTQKYDRRGDERLRNAARNLD 337


>gi|262067786|ref|ZP_06027398.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378509|gb|EFE86027.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693]
          Length = 362

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 106/353 (30%), Gaps = 38/353 (10%)

Query: 18  HGKII--YYFRKG------HGRRIRLPYPHESTFIPAYMSA----------LTGSTPKRE 59
            GK    Y  R           +  L           +  A               P   
Sbjct: 14  KGKRRKPYIVRGPAVLTEKGYFQPLLGSFETKKEAEIFRIAYFNKNKDSVDKEVEKPLIA 73

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                +K+    + L   + K+     L   +  +  ++F+   +K    D + I    +
Sbjct: 74  ENKKDKKEKILFENLYDIWLKNKKPSKL---TLRNLTTHFNN-SKKLHKLDIKTINGIIL 129

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----RPW 174
           ++ +     +  +     +  + +F +A+  ++   +    ++ P  +         R +
Sbjct: 130 QNILNDANLSKGTLRNLKSFWKQIFDFAILNDFCQKDYVTFLKLPTEEKGKKTSDRNRIF 189

Query: 175 TKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           T ED+Q+  +      + R           Y+GLR ++     ++++      I   K+ 
Sbjct: 190 TTEDLQKLWNNLYNDEKDRFKIIDVILVHCYTGLRPNELLNIKIENVNLKEKYIDITKSK 249

Query: 231 T----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
           T             F  +       KE  F   D  K+    +   F+       ++  +
Sbjct: 250 TKSGIRRLPIPSKIFELIKKRYDNEKEFLFTRYDGAKLLYDTYDYQFREVMIDLEIDYHT 309

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
            H  R   AT+ ++A      ++   G  +     E Y     +  R  I   
Sbjct: 310 THDCRHTFATLLSNAEIDKEIIIKLTGHSSYKITSEKYIHKVLEDYRNAIDKI 362


>gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 409

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 79/263 (30%), Gaps = 17/263 (6%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I +K    D    ++T + I        + +     ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVDDKGLAIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQ 191
           L  ++ + + A ++ Y           PK++ +  +  ++E  ++ +        S    
Sbjct: 189 LAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHCSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTP 249
            R  F F  Y+G   +D+      +L  +       K             +  + L +  
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIE 308

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
              +           +        K  A  A +  + + H  R   A++   +AG     
Sbjct: 309 KYNDDTRPTLFPMLYHPN-LRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   +   + Y K   + 
Sbjct: 368 ICKMLGHSNLQTTQRYAKVTPKK 390


>gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1]
 gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1]
          Length = 390

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 91/365 (24%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 17  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 74

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   +     +   K G      I     +      K
Sbjct: 75  MTLCQLYAK--QNAQRANVKKSTQKQRKQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 132

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 133 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 192

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 193 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 252

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 253 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYN 312

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 313 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 372

Query: 322 YTKGA 326
           Y   +
Sbjct: 373 YAHAS 377


>gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 389

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 81/281 (28%), Gaps = 22/281 (7%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG 122
            T    ++ + K       A +S  ++    +++           D  ++++  + +   
Sbjct: 111 QTFDEYLAGFLKRVG-KDRAYSSYDNYRKRRNRLASFLEYEYHVKDIAFKELKREFVEKF 169

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           V            +    L  ++++   A +  ++A +P              R  +  +
Sbjct: 170 VVYLSTVKGLASGTIHSTLKKLKLMTYTAYKNGWIAADPFAGFYVKAEYA-ERRYLSASE 228

Query: 179 MQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R AF F  ++GL  +D  +     +  +    +        T 
Sbjct: 229 LQAVMDVRLPNYRTGINRDAFVFCAFTGLSHADVVKLTHADIHTDDNGERWIIDKRQKTG 288

Query: 236 ELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                      ++L                 K      ++  +  A  AG++   + H  
Sbjct: 289 TQFRVKLLPAAEMLYKRYKDTYRTSEKVFPLKGTYKTLNMSLRHVARHAGLSFNPTIHMA 348

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   AT      G     +    G K +   + Y K  +  
Sbjct: 349 RHTFATTVTLTQGVPLETVCKMLGHKRITTTQIYAKITNDK 389


>gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
 gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876]
          Length = 432

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/429 (9%), Positives = 94/429 (21%), Gaps = 99/429 (23%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  +                           + +  TL 
Sbjct: 7   RKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-- 128
            L+  +  +    G+L+  +  ++     +I +        + +T+ H++  ++      
Sbjct: 67  ELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGG 126

Query: 129 -------TPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---- 174
                     S     +    ++  F++AV  +       +     + K E    +    
Sbjct: 127 TVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETDLFADET 186

Query: 175 -----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
                       +   +  +          L  +   ++GLR  +      Q +      
Sbjct: 187 ATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDINLEEQY 246

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    I V      +  +      ++        +     
Sbjct: 247 LTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRN 306

Query: 268 QFSIWFKA------------------------------------------KATKAGVN-- 283
            +    +                                               AG    
Sbjct: 307 FYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFGCLREDGCLELPATIETACRTAGRKVP 366

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
                  H +R    T     GA   ++    G   V      Y       R   + S R
Sbjct: 367 ELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHAT---REAKRTSAR 423

Query: 339 ISSVVDSDD 347
           +   V  +D
Sbjct: 424 LLDKVAGND 432


>gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115]
 gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115]
          Length = 444

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 90/372 (24%), Gaps = 63/372 (16%)

Query: 18  HGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            G+I +  R     G + R      +        A+  +  + +    P     T+  ++
Sbjct: 25  SGRIRWRVRVQYPDGTKER--RSGTARTKTEAQRAIITAQKEAQEGKRPVSDTLTVGEMV 82

Query: 76  SEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132
           +EY ++      +  +   +   Y   ++ +        I  + +R+  E       +  
Sbjct: 83  TEYMRAKGAT-WSQRTALNNDALYTRHVLPELAHLKAAGIDARRLRAYFEWLSEKRPTPD 141

Query: 133 ------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWT 175
                         Q    +   +K A+    +  NP            G        + 
Sbjct: 142 GEGVRPPLGYSGQRQIHVLLSGAYKRAIADGLLRDNPATYARPLSPTKGGTVRAAKVKYF 201

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             +        +   +  L   FL  +GLR  +        +Q +       +     + 
Sbjct: 202 DPEELGRFIEAALKDRWALPLAFLALTGLRIGECLALTWADVQKDKTGADFVEVSKTRSE 261

Query: 236 ELPDGF-------------------MKLLAMTPIG-----------------KETFFINN 259
                +                   + L+                           F + 
Sbjct: 262 FEGTYYTGGPKTAAGVRRVYLGGDALALIEDMRRRVKIEARAEGYQGEGLKDHAPVFPSV 321

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           D + M         +     AGV   S H +R  + T     G     + A  G   V  
Sbjct: 322 DGRPMRQDSLRQIMRRTCEVAGVPLLSPHALRHSTGTYLISRGHDPVSVAALLGHAQVST 381

Query: 319 A-ETYTKGADRI 329
               Y       
Sbjct: 382 TLNIYAHALPEK 393


>gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673]
 gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673]
          Length = 320

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 63/259 (24%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +YR      +++ N+   +     Q      +  Y  +    +        + P +  
Sbjct: 55  IEDYRLYLSAQNMSENTIHVYAYAIRQFFALYHEITYSNLK---LYKVFLLEHYKPQTVN 111

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    ++            +  +           +        +           
Sbjct: 112 LRIRALNSYIEFKKLNPGKIPMVRIQHKNYLDNVISEADYEYLKNCLLRDEKYL---YYF 168

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              F+  +G R S+  +   + +      I ++                 +  L      
Sbjct: 169 IIRFMAATGARVSEVIQFEAEDIFTGYKDIYSKGNKVRRIYVPKALQKDAIAWLKAIRQE 228

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
           +   F+N     +         K  A    +N      H  R   A    +       L 
Sbjct: 229 RGFVFLNRYGNPITPGGIRGQLKNMALAYWMNPEVVHPHSFRHRFAKSFIEKCGDISLLS 288

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G K ++    Y + + 
Sbjct: 289 DLLGHKNLETTRIYLRRSS 307


>gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 21/288 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYAKQVEAGMKAKATLSKYLVVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRGFLTKEEIRMLMDG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++    + +        T    +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLREENVRTYFDNHEWININRQKTGVESNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGV--NKSAHGVRKFSATI-S 297
             L    I K      + +        +     +A A + G+  + + H  R  +AT   
Sbjct: 297 LDLPRKIIEKYRGLCGDGRIFPVPHYMTCLYGIRAVAKRCGITKHLTWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G     + +  G K++   + Y K         ++   + + + S
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMENLVARLGS 402


>gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656]
 gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656]
          Length = 432

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/429 (9%), Positives = 94/429 (21%), Gaps = 99/429 (23%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  +                           + +  TL 
Sbjct: 7   RKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTP 130
            L+  +  +    G+L+  +  ++     +I +        + +T+ H++  ++      
Sbjct: 67  ELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGG 126

Query: 131 SS------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---- 174
           +                F   ++  F++AV  +       +     + K E    +    
Sbjct: 127 TVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETDLFADET 186

Query: 175 -----------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
                       +   +  +          L  +   ++GLR  +      Q +      
Sbjct: 187 ATDRDKVKPLSFEMYRKLIEQLGKRSGDAILPVQIAYFTGLRLGEVAGLTWQDINLEEQY 246

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    I V      +  +      ++        +     
Sbjct: 247 LTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRN 306

Query: 268 QFSIWFKA------------------------------------------KATKAGVN-- 283
            +    +                                               AG    
Sbjct: 307 FYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVP 366

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
                  H +R    T     GA   ++    G   V      Y       R   + S R
Sbjct: 367 ELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHAT---REAKRTSAR 423

Query: 339 ISSVVDSDD 347
           +   V  +D
Sbjct: 424 LLDKVAGND 432


>gi|227498407|ref|ZP_03928553.1| site-specific recombinase [Acidaminococcus sp. D21]
 gi|226903865|gb|EEH89783.1| site-specific recombinase [Acidaminococcus sp. D21]
          Length = 357

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 107/350 (30%), Gaps = 31/350 (8%)

Query: 14  ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            R ++G +     Y       ++ R  +  +          L  +  +         K  
Sbjct: 7   YREKNGSVCLILSYKVGSRWRQKTRQGFKTQREARQHQDELLEAAQKEIGTTLDKTLKAI 66

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           TL+   + +++      L   S +++E    ++     D   + IT   + + +      
Sbjct: 67  TLRQFWAIFKRDMQGR-LTYGSILAYEDRIKRL-PNILDLPIKNITPPVLMNEINGLPFA 124

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSE 188
             +    L ++  + + A+  + +  NP   V + + + E  IR +++E++ Q    + +
Sbjct: 125 AKTKNLSLAAVGRVLRHAMTYKIIKTNPAAEVPQVQDRREQTIRAFSREEVAQILDHFQK 184

Query: 189 GSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
             +  L +  +L    +G+R  +        +     + K  K                 
Sbjct: 185 HGRDPLYYLVVLVASRTGMRIGEIRGLTWDCVNFAAGTFKICKQWARTSRTSYGLTPCKT 244

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                T+ +P   +  L      K                  ++  +   K    +S H 
Sbjct: 245 KNSNRTIPVPKVVLAALRKWKDSKPFRIDGMVFPPERLRTIQVYINSYIHKHYPGRSLHA 304

Query: 289 VRKFSATISADAGATAHELMATYGWK--TVDQAETYTKGADRIRLGIKNS 336
            R   AT+        + +    G    TV     Y      I+L    +
Sbjct: 305 FRHTYATLMLHETGDINLVANLLGDTIQTVSTT--YANNTKDIQLAAAKA 352


>gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
 gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402]
          Length = 286

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 11/263 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           LI  Y+        ++ +   +    ++  + +      ++T + ++   E     + P+
Sbjct: 10  LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKK---EVTKELVKLYKEELMKSYKPT 66

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S    L ++   F++        I      +R   +        +       +   +  +
Sbjct: 67  SINSMLAALNQFFEYNG-WLECKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQKNER 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
             +  + +  +G+R S+     VQ L++    I  +     I        + L       
Sbjct: 126 LYVLLQAICSTGIRVSEHRYITVQALKDGYAQIYNKGKVREIFFSDDLKRILLKYCHKNK 185

Query: 252 KET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
            E    F+    + ++ +      K     A V +S    H +R   A    +       
Sbjct: 186 IENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNLKKDIAR 245

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           L    G  ++D    YT  + R 
Sbjct: 246 LADLLGHSSMDTTRIYTMSSGRE 268


>gi|160915258|ref|ZP_02077471.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
 gi|158433057|gb|EDP11346.1| hypothetical protein EUBDOL_01266 [Eubacterium dolichum DSM 3991]
          Length = 357

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 102/317 (32%), Gaps = 12/317 (3%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           K   R++     +  T   A M+ L  +    +   + + +  T   +  E+        
Sbjct: 42  KRGMRQVYKTIGYYFTKQEAQMALLEYNKNPDDINFAKQVENKTFNDVFEEWFDML-PKD 100

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
           ++ N+       +    +K  +   + + T   ++ +     + SS I+  + M  + K+
Sbjct: 101 ISENTVKGHLFAYQH-CKKIVNRKIKSLRTIDFQNVINDCSLSDSSKIKIKSLMVSVCKY 159

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG--- 203
           A   +Y+  N    +     K   +     ++  +      +          ++Y+G   
Sbjct: 160 AEMNDYINKNYASFLPAINEKQSDLHQPFTKEELRILW-EHKDMPYVDTILIMIYTGFRI 218

Query: 204 ---LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
              L   +     +++               I+ +      + +    P  K       +
Sbjct: 219 NELLEMENCKNIDIENKTMKGGFKTDAGKDRIVPIHSSIMPLVMNHYDPAQKYFIRNKRN 278

Query: 261 KQKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +M    +   +F     K  +    H  R   AT+  DA A +  +M   G  + D  
Sbjct: 279 GSRMKYQNYRNNYFDKIMIKLKMEHLPHDCRHTFATLLNDAEANSTSIMKLIGHSSFDIT 338

Query: 320 E-TYTKG-ADRIRLGIK 334
           E  YT    + +R  I+
Sbjct: 339 EKIYTHKDIEELRKAIE 355


>gi|326791447|ref|YP_004309268.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542211|gb|ADZ84070.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 309

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 87/279 (31%), Gaps = 13/279 (4%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             I   + + TT + L   + K     +++  + I +E+ ++ I + + +    +I +  
Sbjct: 2   PKIEMRKHEITTFEELFLHFIKHCKIKNVSPKTIIYYETSYNSICKFNPNIQLDEIDSLL 61

Query: 119 IRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRP 173
           I+  +   K T   +S    L  +R +  +         + +      +  K      + 
Sbjct: 62  IQDYILYLKQTNNLNSVNTRLKGLRTMLNYGYSINALPKIKVQLIRVDKEVKETYSTEQI 121

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T       K       +  +   +L+ +G R S      +  L  +   +  + T    
Sbjct: 122 LTLIKKPNVKKCSFAEYRNWMIVHYLVSTGNRLSTLTNIKIGDLDIDNKLVTLRHTKNRH 181

Query: 234 TV------ELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKS- 285
                    L    ++ L       E +     + K           K      GVN + 
Sbjct: 182 QQIIPLSSMLCKHLVEYLTYREGTSEDYLFPTVENKQLTKDTLITAIKNYNRSRGVNITS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R++ A      G     L    GWK +   + Y +
Sbjct: 242 IHAFRRYFAKQCVLNGIDTFTLQKLGGWKDLTVVKNYIE 280


>gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 400

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGV 123
           TL  L++ Y  +     L   +  ++ +    ++          D   ++I  + I    
Sbjct: 109 TLAELLT-YHNTKMTSVLKPGTMKNYYTTEKYVLEFLEKKINTNDIYLKQINYRFITDFE 167

Query: 124 ESRK-HTPSSAI---------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              + + P +           + L  ++ L   A++ E++  +P        +K E    
Sbjct: 168 HFLRNYKPKTHRSKPTNNGVMKHLERLKKLTNLALKMEWIDKDPFSKYSLHYKKKERDYL 227

Query: 174 WTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              E            +  + R  F F  YSGL   D+     +H+   I   K      
Sbjct: 228 LQDEIDILENLNLDRITLSRTRDVFLFSCYSGLSYGDAKSLEAKHIVTGIDGNKWIV--K 285

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGV--NK 284
                     + +L       + +    +         +  + + + K  A  A +    
Sbjct: 286 EREKTGKLFKVAMLPKVKAILKKYEKEANISGLLLPVYSNQKTNQYLKDLAKLAKISKKL 345

Query: 285 SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + H  R   AT      G     +    G   +   + Y++  D+ 
Sbjct: 346 TFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQK 391


>gi|291439566|ref|ZP_06578956.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342461|gb|EFE69417.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 457

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 91/388 (23%), Gaps = 61/388 (15%)

Query: 14  ERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  RHG   +    +    G      +P +   +         +   R     PR    T
Sbjct: 61  KTERHGLGLRYRARYIGPDGTEKSKSFPDKQKRLADAWLTNIEADMARGQYIDPRAARIT 120

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +     +  +      +  +           +   G         +HIR      +   
Sbjct: 121 FREYTDRWLAALTTDLTSRAAVEGRLRL--HALPYLGTRPIGSFQPEHIRDWNRQLEDAV 178

Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +SA        ++  +   AV    +A NPC        +    R       Q F     
Sbjct: 179 ASAQYRRLIFDAVSSVLNAAVDDRLLASNPCRVRSVKAPRPAPSRVHPWSAEQVFDVRAG 238

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---- 243
              + R   +     GLR  +     V ++ +  +    Q+   +    +     +    
Sbjct: 239 LPERYRAMVDLGAGCGLRQGEIFGLAVDNIGDLGWLYVRQQVKKVRGTLVFAPPKRGKLR 298

Query: 244 ----------LLAMTPIGKETFFINNDKQKMNATQFSIW--------------------F 273
                      L           +          + +                      +
Sbjct: 299 DVPLDLEVSAALREHMAAFPPVDVTLPWLTPTGPKVTHRLLFTSGSGAAIWSQAFNDRAW 358

Query: 274 KAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
           K     AG+                  H +R F A++  DAG +   L    G       
Sbjct: 359 KPALASAGIIPAPGKGERYAAAREHGMHALRHFYASVLLDAGESIKALSLYLGHSDPGFT 418

Query: 319 AETYTK----GADRIRLGIKNSRRISSV 342
              YT        R R  I    R +  
Sbjct: 419 LRVYTHLMPSSETRTRKAISAMYRAAGH 446


>gi|90592679|ref|YP_529594.1| putative integrase [Clostridium phage phi CD119]
 gi|71482536|gb|AAZ32277.1| putative integrase [Clostridium phage phi CD119]
          Length = 368

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 103/365 (28%), Gaps = 43/365 (11%)

Query: 15  RTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R R  K   Y        G  ++       +      ++  +  +  K +++        
Sbjct: 9   RKRGEKFHVYVEYVEEETGKKKQKSYGSYEKKKDAEKHLIEIKSTINKNKFVAP---NSV 65

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--R 126
           TL      Y +       +  +  + +S     I     D     I+   +++ V    +
Sbjct: 66  TLVERCYIYLEEKK-DDFSPYTLRNRKSVIRNHIEPFFRDMKLIDISPSFLQTYVNKIYK 124

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K++ +SA   ++ +  L   A R   +  +    V  P +K   +  +            
Sbjct: 125 KYSLNSAKNSISFLTALLHEAYRLREIQEDVSNFVITPSKKDTSVTIF-YTKESPLLLER 183

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------I 233
              +   +    +L  GLR  ++       +Q N      Q    +              
Sbjct: 184 CLDTDLAIPIYLMLTLGLRFGEAVALRWCDVQLNEGVKSKQTMVHVDGKVTFKPLTANLR 243

Query: 234 TVELPDGFMKLLAMTPIGKET-------------FFINNDKQKMNATQFSIWFKAKATKA 280
                   + LL    + +                 +N   Q     +F   FK      
Sbjct: 244 EDYTTTELIVLLKEEKLRQNKLKLQGILKNELDLICLNKKFQIWTQQKFFKPFKKLLESN 303

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
            +     H +R  +AT+   +G     +    G   +      Y+   +   +  + S  
Sbjct: 304 NLRYIKLHELRHTNATLMLLSGTNIKTISERLGHTDIKITMNKYSHVLEE--MDKEASEN 361

Query: 339 ISSVV 343
           +S ++
Sbjct: 362 LSKIL 366


>gi|28867518|ref|NP_790137.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850753|gb|AAO53832.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 412

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 90/373 (24%), Gaps = 46/373 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---LTGSTPKREYINS 63
           L P ++      G   Y       +   L      T   A   A   L  +    E +  
Sbjct: 36  LQPGLSIRVLPSGHASYMVTWARNKAATLGRVGVITLEQARTDASRYLADAHAIGEPVAI 95

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTK---H 118
             K+       +  +         A + R +                     I TK    
Sbjct: 96  TEKRTGAAMPTLDHFLTHTFEPWAAEHHRDAKNGNRAIRHSFEALLSIPLSSIDTKRVEQ 155

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           IR+        PS+A + +T +R +   A+    +  +P    +        +R  + E 
Sbjct: 156 IRTAWLRAGLAPSTANRNITRLRGVLSRALEWGVLQEHPLKVRKLKVDDRSRVRYLSIEE 215

Query: 178 ----------DMQQFKSFWSEGSQPRLAFEFL---------------------LYSGLRC 206
                        + +      ++ RL                          + +G+R 
Sbjct: 216 ETALREALEARSNEMRDARDSANKWRLERHKEPLADLRAVRYADHLEPLVVLSINTGVRR 275

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            ++       +      I  +   +       V L    +  L      +         Q
Sbjct: 276 GEAFNLTWADVDLKNKLITVEGDTSKSGQTRHVPLNREALDTLTKWKEQRGGNGFVFPGQ 335

Query: 263 KMNA-TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +      A V +   H +R   A+    AG   + +    G   +    
Sbjct: 336 HGKRLDNVKKSWSGLLKLAKVERFRWHDLRHTFASKLVMAGVPLNTVRELLGHTDIKMTL 395

Query: 321 TYTKGADRIRLGI 333
            Y   A   +   
Sbjct: 396 RYAHLAPGTKAAA 408


>gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 372

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 80/260 (30%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           + +LA    I +   +    R   G   + ++     R  +E     P           +
Sbjct: 100 FKALADRKNIKWRHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLGAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIESIPTMREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 220 LKRAFLFGCLTGLRKSDIKQLTWQQIQPYTNGK--MFVTTRMQKTKQIVHNPISDEAYGL 277

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                                 K     AG+ K  + H  R    ++  + G     + A
Sbjct: 278 LGERCEGLIFDGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 337

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 338 YLGHKNITTTQIYSKMAAQQ 357


>gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4]
 gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4]
          Length = 407

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 83/288 (28%), Gaps = 26/288 (9%)

Query: 64  PRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKH 118
           P     ++  + I+EY     +   +               +                  
Sbjct: 97  PESGSPSISDIRINEYLNHLAYRRYSHAYIKGRRYILTYFYKIIEKENQEHPLTLEDIDK 156

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTK 176
                   +   ++  ++L  +RV  ++AV + +   +   ++  PK             
Sbjct: 157 YIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWCIADLDKALITPKVYSEENLPSFLPW 216

Query: 177 EDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +Q+      E      S+    F  L   GLRCS+     +  +      I  ++   
Sbjct: 217 DKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSDIDWRKEQIYIKRAKN 276

Query: 232 IIT------VELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKA 280
                      + +  +  L      +       F      + ++    +         +
Sbjct: 277 CRPQILPLLHNVGEAIIDYLKNGRPNEVDSDSLFFCAPAPIRPISCNAIASVVYRYLKYS 336

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G+   +K  H +R   AT   + G T  ++    G K+++    Y K 
Sbjct: 337 GINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAKV 384


>gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10]
 gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10]
          Length = 307

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 80/271 (29%), Gaps = 17/271 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            K  +S++         +  +   ++ + +   ++  +     +    +    E+    P
Sbjct: 11  WKKALSDFLLLKRAEGKSERTIKDYDKHVNIFFKRYPNA-LADLEASVLGYMGENI--KP 67

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++       ++  F +   ++ +  NP +     +   +  +      ++ +        
Sbjct: 68  ATYNLRRAYLKCFFDYLKEEDIITSNPIIKLPKRKAQDKIIDIPVDVLQQLLALPDKSSF 127

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMK 243
            G         ++  G+R  ++    V         +             T+ L    ++
Sbjct: 128 TGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNCVTIPAELAKTGVSRTLPLSIETVR 187

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +      +   + NN     + +         S  FK  + K G + + + +R   A  
Sbjct: 188 PITKVISSRPKDWNNNVPVFCSCSAETLDSEVLSRRFKRYSQKLGTDITPYSLRHCFALY 247

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               G  +  L    G  T D    Y   +D
Sbjct: 248 YLRNGGNSLMLQKIMGHTTQDMTRKYVALSD 278


>gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928]
 gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533]
 gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928]
 gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928]
          Length = 391

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 109/383 (28%), Gaps = 59/383 (15%)

Query: 14  ERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F+       +G+ I        ++  A   A+     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYMFQIYLGTNSNGKPIITRRRGFKSYAEA--EAVFNKMSQIKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  F + +I   G+    KIT   ++   + + 
Sbjct: 70  IKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    +     LF++ +R  YV+ NP   +  PK+ +   R        Q +    
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQDELNQF 188

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNIFS 223
                  G  P   F+ L  +GLR S++       +                     I  
Sbjct: 189 LEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGKTIIQ 248

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFK------ 274
                    I          L+      K          K    + S    W K      
Sbjct: 249 PPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVN--------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A K  +          + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADRIRLGIKNSRRISSV 342
           + YT      +        +  +
Sbjct: 369 DIYTHI--NKKNTEDAVNALKQL 389


>gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 411

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 101/288 (35%), Gaps = 21/288 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      N K        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCENGKIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G     + +  G K++   + Y K         ++ + +++ ++S
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMKNLAARLNS 402


>gi|217964693|ref|YP_002350371.1| integrase [Listeria monocytogenes HCC23]
 gi|217333963|gb|ACK39757.1| integrase [Listeria monocytogenes HCC23]
 gi|307570746|emb|CAR83925.1| phage integrase family protein [Listeria monocytogenes L99]
          Length = 384

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 95/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLKNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K     + K+   G  + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  KFKEFYELFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +            +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKT 229
              +  S  R      + +G+R  +      + +                   S    KT
Sbjct: 178 ELANFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSISVNKAWDYKYTNSFVDTKT 237

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK 276
                + + +  ++ L         +             FI    + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTIQYLQSYINWHTDYIKEHAIKNPLMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            T       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CTTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500]
 gi|66732998|gb|AAY52817.1| Int [Listeria phage A500]
          Length = 400

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 99/364 (27%), Gaps = 58/364 (15%)

Query: 21  IIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS- 76
                  G    G  IR      +         L     + E          T K  +  
Sbjct: 22  WRMRVTVGYDYKGTPIRANRTTRTKNERERERELRNFITELEQNGYTAPARMTFKAFVEN 81

Query: 77  EYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128
           EY       +L V +    ++S   +     G     KITT HI + V   +        
Sbjct: 82  EYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDV 141

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        +P S      ++  +F+ AV  + +  NP   V  PK        +T
Sbjct: 142 KPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPNNPAEVVRLPKTTKRPPTIYT 201

Query: 176 KEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----- 229
             +++   +    E  + ++     L SG R ++     V+H+      +  ++T     
Sbjct: 202 PAEIELLNAALLKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVAKA 261

Query: 230 ----------------GTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKM 264
                              I   L       ++               +  F + + + +
Sbjct: 262 GEGLLLKESTKNDLAGIVSIPGWLTTLIETYISNEVLDIQTEGKWANYKFLFADMEGKPI 321

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                   ++    +  +     H +R  SAT+  + G     +      K+       Y
Sbjct: 322 RPDSIYQRWRRFLERHNLPLIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIY 381

Query: 323 TKGA 326
               
Sbjct: 382 AHVL 385


>gi|76788634|ref|YP_330649.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|77405139|ref|ZP_00782238.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
 gi|76563691|gb|ABA46275.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|77176282|gb|EAO79052.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae H36B]
          Length = 421

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 105/374 (28%), Gaps = 72/374 (19%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAH 83
              G+++       +  +     A+  +  + E   S R+K     TL+ L  E+ KS  
Sbjct: 36  IKTGKQVT--TTITAKTLKQLDRAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYK 93

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT------------- 129
               + N+     SY  + II K GD+   KI +  I+  +                   
Sbjct: 94  TWVNSHNTLNRVRSYLDNYIIPKFGDYKPDKIESADIQLWLNDLAKKSKESIESGIKRAD 153

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KE 177
             SA      +  ++ +F + +    +  NP  +V+ P +     +              
Sbjct: 154 KGSAKDFGAVIHKLKDIFDYGITNYGLITNPVSTVKIPPKPKSNKQRIMVLHDDGLVIWL 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +  +         + +L    LL S LR ++     +  L                    
Sbjct: 214 NYLESLDNNRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANK 273

Query: 222 ----------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   +       +            L      K  F    
Sbjct: 274 KDGTKGEVICKATPKTDAGNRSVPVPPPIIEKLRDFHHEMNKYLELHNRHRTKLIFPTIY 333

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                +  +     K +    G+     H  R   A++  +AG    EL    G K++  
Sbjct: 334 GNYMCDRNE-RTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSIST 392

Query: 319 AE-TYTKGADRIRL 331
              TY + A + +L
Sbjct: 393 TMDTYAELAPQRKL 406


>gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 321

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      +  A KA + K+   H +R   AT    +GA    +    G   +   
Sbjct: 241 HHIDGSTVQKAIRHAAKKASIPKTVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTT 300

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 301 QIYTHILQR 309


>gi|269128731|ref|YP_003302101.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268313689|gb|ACZ00064.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 409

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 87/398 (21%), Gaps = 66/398 (16%)

Query: 1   MTPSLRLP-------PFVTKERTRHGKIIYYFRKGHGRRIRLPYP---HESTFIPAYMSA 50
           M      P       P +     + G    Y  +       +  P             +A
Sbjct: 1   MPRKTGKPASSRKARPRLRDGVMKRGSTWSYVIRVRDPETGVSKPKWVGGFVTEEEAKAA 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
              +  K        +   T+   + E+ ++     +   +   + +     I    GD 
Sbjct: 61  RDEARVKARRGEYIDRTTITVAQYLDEWLEAHAV-EIKPRTLAGYHTMVRLYIKPHIGDL 119

Query: 110 DYRKITTKHIRSGVESRKHTP---------SSAIQFLTSM-RVLFKWAVRQEYVAINPCL 159
             + +    I         +          S+ ++    + +      +  E +  NP  
Sbjct: 120 RLQAVRPAQITKLYRDLLASGGEGGKPLSVSTVMRVHAILHKAFADAVLVDELIPSNPAE 179

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             +RPK               +         +    +    Y+G R  +       ++  
Sbjct: 180 RAKRPKGLVREADGIWTPAQLRVFLQAVREHRLFAFYHLAAYTGARRGELLALRWSNVDL 239

Query: 220 NIFSIKT---------------QKTGTIITVELPDGFMKLLA----------------MT 248
           +   I                  K+G    V + D  + +L                   
Sbjct: 240 DGKRITIGGSAGVVKGRRIEGTTKSGRSRVVTIDDETVAVLREHRKAQLAEQFQAGEAWR 299

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAG------------VNKSAHGVRKFSATI 296
                  F     + ++                             +   H +R   AT 
Sbjct: 300 GAEDGYVFTTERGEPIHPDSVGWLMTKTIRAYNNPPQGPKPAEPLPHARVHDLRHIHATT 359

Query: 297 SADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333
              AG   H + A  G          Y        +  
Sbjct: 360 LLLAGVPVHVVAARLGHADPAITLRVYAHVIRSAEVAA 397


>gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
 gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185]
          Length = 397

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  ++ +R+     SL  ++R +  S  + +     +  +  +T + + S     +    
Sbjct: 106 RSFLTFFREEVANSSLKESTRQNHLSTLELLQEFKKEVQFTDLTFEFVSSFDNYLQSKGY 165

Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L ++      +             + K         + E++ + +    
Sbjct: 166 HLNTIAKHMKHLKRYVNVAINKDYMDVQKYAFRKYKIKSVEGRHSHLSPEELHKLEDLQL 225

Query: 188 EGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   +L      F F  Y+GLR SD       ++               +   +     
Sbjct: 226 GGKYAKLQKTKDSFLFCCYAGLRYSDFTNLTSANIVEFQQET--WLIYKSVKTGIEVRLP 283

Query: 243 KLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
             L         + +    +N   +  + +  +         A ++K  S H  R  +AT
Sbjct: 284 LYLLFEGKGIHILQRYKDDLNRFFKLKDNSNINKELNILGKLAEIDKRISFHTARHTNAT 343

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +   +GA    +    G K+V   + Y    D
Sbjct: 344 LLIYSGANITTVQKLLGHKSVKTTQVYANIMD 375


>gi|29566822|ref|NP_818386.1| gp85 [Mycobacterium phage Omega]
 gi|29425547|gb|AAN12729.1| gp85 [Mycobacterium phage Omega]
          Length = 424

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 94/341 (27%), Gaps = 45/341 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +   ++    GR+    +P++        +              P+ +  T   +  ++ 
Sbjct: 57  RWRAWYIDTAGRQRTKKFPNKK--AAERWADKQAGDVNAGAWADPQAQKETFSVVAEKWY 114

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPS------- 131
            +    +    ++  + +  D I + K GD   R I  + ++  V     T         
Sbjct: 115 ATK--SNREATTKHGYRNILDTIVLPKWGDTPIRNIDHESLQDWVNELSTTGEYRTKGEG 172

Query: 132 --SAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             SA + +     +  + K+A+R + +  NP   +E P ++    + +      Q  +  
Sbjct: 173 GFSASRTIQIHLVVNGVMKYALRTDRILKNPAEGLELPTKRKNTRQRYLTHKQLQEFAAE 232

Query: 187 S--EGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    L       +    G R  D      +     + +++               
Sbjct: 233 MGRFEGLTLLLGYCGARTSEAFGARGRDFRGRIWELYGAIVRNVEKDTKTHRARFIPIPD 292

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--------------------- 279
            +      P   +       +  +   ++   F                           
Sbjct: 293 VVWNKIQMPANPDALVFPGRRGHITNGEYRWAFDGALRTMQERTEKLRAEEIAETGRATT 352

Query: 280 -AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            A    + H +R   A+++  +GA    +    G  T    
Sbjct: 353 PAFPRITPHDLRHTCASLAISSGANVKAVQNLLGHATAVMT 393


>gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51]
 gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 395

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 95/299 (31%), Gaps = 47/299 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR--KITTKHIRSGVESR- 126
               + ++   A    +A  +   +++  D +I R   + +    ++T +HI+   +S  
Sbjct: 67  FTDYLQKWLTQAKPT-IAKTTFKGYQTMLDGRISRYFTELNITLGEVTPQHIQDFHQSIF 125

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              HTP++ I +   +R   + AV++E +  NP   V+RPK+     + ++ E+M     
Sbjct: 126 DEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKKNVYHAQFYSAEEMMALFD 185

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
             S+            Y GLR S+        +     +I  +                 
Sbjct: 186 EISDDPLEICVKLAAYY-GLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAVGE 244

Query: 231 -----------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                       +     +   +      +   ++   + M   
Sbjct: 245 DVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQAGKLMRPN 304

Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
             +  F     KA + K   H +R   A++    G +  ++    G  T       Y+ 
Sbjct: 305 YVTEHFSWALEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSH 363


>gi|308174806|ref|YP_003921511.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|307607670|emb|CBI44041.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7]
 gi|328554760|gb|AEB25252.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208]
          Length = 383

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 106/380 (27%), Gaps = 56/380 (14%)

Query: 11  VTKERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +   +T  GK  Y+         G   + +     +      +++ +  +  K  YI +P
Sbjct: 4   IHPYKTSKGKQKYFVAYDVYDENGERHQKKKRGFDKKKDAKEFIAEVESAINKGMYIQTP 63

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           +    T+   +  + +     ++   +   +++     I    GD     + T+HI + +
Sbjct: 64  K---ITVNDYLERWLE-VKSINIGSQTVTLYKNSLKNYIYPYIGDILLANLKTEHINNFI 119

Query: 124 ESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172
            +                +  +    +     + V  + +  N       PK        
Sbjct: 120 HALYTKDRGKGKIGYAYKTIKRSHEIVSAALDYGVDNKLIKTNVAKKAILPKEPKRKRID 179

Query: 173 --PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------- 217
                + +     S   E ++  LA+   +  G+R  +      + +             
Sbjct: 180 VWDLEQANQFLETSKEDEQNRYHLAYAIAIICGMRQGEILGLTWKDVDLEDNLLYVEQTL 239

Query: 218 ---------QNNIFSIKTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDK 261
                           +     +    +      K++             ++        
Sbjct: 240 SHDGKEILDDTKTKKSRRTIEFSESLADQFRQQKKIIESEKEKFGDDYQDQDLVICTELG 299

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
             +NA            KAGV K + H +R   A++    G    E+    G        
Sbjct: 300 NPINARNVLRKQAKLMKKAGVPKITFHDLRHVHASLMLYFGHDIKEISERLGHAKSSFTY 359

Query: 320 ETYTKGADR-IRLGIKNSRR 338
           +TY     +  +  I N +R
Sbjct: 360 DTYVHIMSKTKKKLIDNLQR 379


>gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 89/296 (30%), Gaps = 29/296 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTP 130
            K +   S A  + ++       +     D   + I+   I        R  ++ R    
Sbjct: 115 LKESVGKSRAEGTYLNLSHSDKNLREFVEDKGLQDISISTITEDLFEEYRFFLKKRGLKG 174

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSE 188
           ++   +L  +  L   AV +  +  NP    +  K + +    +      +   K   SE
Sbjct: 175 TTINNYLCWLSRLMFRAVSKRIIRCNPFEHAKYEKEEKKIRFLQKSEVAKLATMKMNDSE 234

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244
               RL F F   +GL  +D       H+Q       +  K ++   +  V       + 
Sbjct: 235 AELARLMFVFSCLTGLAIADMETLQYGHIQTAAGGRKYIRKERQKTKVEFVVPLHPIAEA 294

Query: 245 LAMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNKSA--HGVRK 291
           +      ++         K            + +             G+ +    H  R 
Sbjct: 295 IIRHCWEEQEGNEELQTVKEKGDSLVFPRSCSRSVMGKNLCIVGKACGIRERLSYHMARH 354

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
              T+S  AG     +    G  ++   + Y +  DR     ++  R+ +   + +
Sbjct: 355 TFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDRK--ISEDMDRLIAKQSAKE 408


>gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus
           flavefaciens FD-1]
          Length = 342

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 93/304 (30%), Gaps = 41/304 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVES 125
              +Y       +L+ N+  ++   F  ++    +             I  + +   ++ 
Sbjct: 17  FFKKYL--PGQKNLSPNTIRAYADAFKLLLIYCEEEKGIKSDRLKLENIDRELVSGFLDW 74

Query: 126 ----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
               R    ++  Q L ++    ++  +     ++   SV +   K          T++ 
Sbjct: 75  LEEIRGCKTTTRNQRLIALHSFCRYVQKISPENMDNLQSVIQIDYKKSKKAIVPYLTEKQ 134

Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTI 232
           M+   +     +    + ++    L  +G R  + C   ++ ++    ++ T   K   +
Sbjct: 135 MKLLLAQPDGNTWQLFRDKVMLAVLYDTGARVQELCDLRIKDVRLESPAVITLTGKGNKV 194

Query: 233 ITVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAG- 281
             V +  G  KLL +                  F+N   QK++    S         A  
Sbjct: 195 RQVPIMSGTQKLLKIYLEKHKGNAGISRGDNPLFVNQRGQKLSRWGVSHIIDKYVDMAKE 254

Query: 282 ------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
                    +AH  R   A     AG     +    G       E Y K   +  R  I+
Sbjct: 255 KGLDVDFPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTETKRKAIE 314

Query: 335 NSRR 338
            + +
Sbjct: 315 AACK 318


>gi|293604558|ref|ZP_06686962.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
 gi|292817036|gb|EFF76113.1| integrase family protein [Achromobacter piechaudii ATCC 43553]
          Length = 331

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 101/347 (29%), Gaps = 35/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + +++ R   +  + R   G R+R       ++  A   A       R Y  +   +   
Sbjct: 3   IYRDKARGCLVFEFDRLIEGNRVRARKALPKSWSKAQADAYDRQESARLYALASGVERPQ 62

Query: 71  L--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES 125
              +  ++ Y K      L      + +     ++            ++   ++      
Sbjct: 63  FLIEDAVAIYLKE-RVPDLKSG--DNIQRELGMMMWAYKGKPMGALAEVCRAYVEKAFNE 119

Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +   P SA      +  +    +W  ++  +                  R +        
Sbjct: 120 QTGEPLSAATKRNRIRYLTSACRWGWKRHGMHDRDPAERVIAPEVRNERRHYVNRAEMLA 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +  + R A     YSG+R S+   A  Q     +F ++  K G    V +     
Sbjct: 180 IARACKCKKSRAAIRIAFYSGMRLSEILEAVRQD---GMFLLEDTKNGEPRHVPMHPKIR 236

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
                           +     N    S  FK+ A   G+ +   H +R  +A+   +A 
Sbjct: 237 AA--------------SKVGPRNKWSVSKEFKSAAVAVGMGHLRFHDLRHSAASAMINAK 282

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              + + A  G K+    + Y        L  ++ +     +    P
Sbjct: 283 VNLYTVGAVLGHKSAASTQRYAH------LATESIKLALGEIGKKSP 323


>gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 279

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 82/275 (29%), Gaps = 16/275 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           +  Y         ++ +   ++      +             + +    E  +    P+S
Sbjct: 10  LDSYLDYLKRQERSLATIKQYQRDIQSFLMYIKKH---GFCKESVIQYKEKLRKEYLPAS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++     ++   E + +      ++     E      +       +      + 
Sbjct: 67  VNVKLAAINGFLNYSGATE-LKVKQLRIQKKTYCAKEKELSKNEYLCMVNTARSLGQEKL 125

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF--MKLLAMTPI 250
            L  + +  +G+R S+      + + N    I  +     + +         + +    I
Sbjct: 126 ALLLQTICGTGIRVSELSFITAEAVCNGEALIHMKGKTRTVLIPGKLRKVLKRYMGSQKI 185

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
                F+    + ++ +      K    KAGV       H +R   A     A     +L
Sbjct: 186 SSGAVFVTRTGRPLDRSNIWKMMKRLCGKAGVETKKVFPHNLRHLFARCFYAADKDIAKL 245

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
               G  +++    Y K +     G+++ +R+ ++
Sbjct: 246 ADVLGHSSINTTRIYIKSS-----GVEHRQRMDAL 275


>gi|146337601|ref|YP_001202649.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
 gi|146190407|emb|CAL74406.1| putative phage related integrase [Bradyrhizobium sp. ORS278]
          Length = 429

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 117/383 (30%), Gaps = 48/383 (12%)

Query: 9   PFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P       + G     + Y    G  RR+ +      T   A   A           +  
Sbjct: 33  PGFGLRVKKSGAKSFLVQYRNANGRSRRLTIGRFGVLTVEEARKEAKLALGNVVRGSDPA 92

Query: 65  RKKP-----TTLKWLISEYRKSAHW--------GSLAVNSRISFE-SYFDQIIRKSGDFD 110
             +       T++ L  EY + A             +  +  +        II   G   
Sbjct: 93  EARKLARGAMTIQDLAREYLEKAERGLILTRGGKGKSETTLYTDRGRVERHIIPLIGKRT 152

Query: 111 YRKITT----KHIRSGVESRKHT----------------PSSAIQFLTSMRVLFKWAVRQ 150
            +  T     + +R  +  +  T                  +A +    +  +F +AV +
Sbjct: 153 IKDFTASDAGRFLRDVIAGKSATDVKTEKKRGRAIVTGGKGTAARTAGLLGGIFSYAVAE 212

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAFEFLLYSGLR 205
            Y   NP   + RPK +T   R   +   +     +         Q  LA      +G R
Sbjct: 213 GYRPDNPVSGLRRPKDETREWRLDDEGYRRLGKALETAEANGAHWQRVLACRAAALTGCR 272

Query: 206 CSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
             +        L     +++   ++   ++  +      + + A      +  F +    
Sbjct: 273 LDEIQGLLKSELDTKGMALRLGDSKTGKSVRPIGSAAVAVLVAASDKSKSKYVFPSITSD 332

Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             + T  + W +  A KA    ++HG+R   ++ + D G +   + A  G       E Y
Sbjct: 333 AKHHTGLTRWLQDIAGKAVPGITSHGLRHSYSSTAEDLGFSIPTIKALIGHSRASVTEGY 392

Query: 323 TKGADRIRLGIKNSRRISSVVDS 345
               D   L    + RI+S +D+
Sbjct: 393 IHKIDSALLA--AADRIASHIDN 413


>gi|311747169|ref|ZP_07720954.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
 gi|126578878|gb|EAZ83042.1| mobilizable transposon, int protein [Algoriphagus sp. PR1]
          Length = 387

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 98/324 (30%), Gaps = 26/324 (8%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE----YRKSAHWGSLAVNSRIS 94
                  +          K E  +   K     K L  +    Y K         N++ S
Sbjct: 60  DTLKIAASIRQKRENYLNKPEIYSQFEKDQLRAKELGEQSFIDYFKKLTNKK-KGNTKHS 118

Query: 95  FESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS-----------SAIQFLTSMRV 142
           + S  + I+  +G +  +  +  K + +  +    T S           SA  +   ++ 
Sbjct: 119 WTSALNYIVTFTGGELKFADLNQKLLENFKDYLLTTKSFRSNKTPLAQNSASSYFNKIKA 178

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
             K A + E +  +    +   K +       T  ++        +    + A  F   +
Sbjct: 179 GIKQAFQDEILLTDLNSKISPIKTEETRREYLTIAELNNLVKTPCKDEVLKRAAIFSAMT 238

Query: 203 GLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           GLR SD  +     L+       I + K +KT +I    + D    L+      ++    
Sbjct: 239 GLRFSDIHKLQWNELEYIESQGYILNFKQKKTKSIEVHPISDQAYNLIGGGNKPQQIQQD 298

Query: 258 NNDKQKMNATQF-SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                 +  + + +   K     AG+ K  + H  R   AT+ A        +    G K
Sbjct: 299 TLVFVGLKYSAYKNDILKGWIESAGITKKITFHCFRHTYATLLAYGNTNPGTVQKMLGHK 358

Query: 315 TVDQAETYTKGADR-IRLGIKNSR 337
            +     Y    D+  R       
Sbjct: 359 NIKTTMLYFHIVDQLKREASNVIN 382


>gi|307289375|ref|ZP_07569329.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306499630|gb|EFM68993.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 111/349 (31%), Gaps = 41/349 (11%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +   R     Y   ++K  G   +L      T   A  +A       ++ +    K+ 
Sbjct: 1   MARFIKRGNSWQYEISYKKQDGTHSKLRKSGFKTKREAKEAADEIEYNLKKGLQ-GDKQN 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
             L     ++        ++  +   ++   + I R   +    ++T    +  +     
Sbjct: 60  ILLSEYFKDWMNLYKKDVVSEITYRKYKDTLNNIERYMPNIILSQLTRPLYQRYLNKFAE 119

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFK 183
               S+ I+F   +R   K AV +  +  +P        ++++     +     D ++  
Sbjct: 120 EHMKSTVIKFNNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRLM 179

Query: 184 SFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQN--------------NIFSIK 225
               +G  P  A   ++     +G+R ++        +                     K
Sbjct: 180 ELAEKGIDPHYASPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGK 239

Query: 226 TQKTGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIW 272
           T+   ++  +++     +LL                   ++  F N+    ++    + +
Sbjct: 240 TKNESSVRKIKIDFHTAQLLKEYKKAQKELFDKLEVQNPEQFIFYNSQNGLISNNAVTKY 299

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + K ++ GV    + HG+R   A++    G     +    G  ++D  
Sbjct: 300 LRKKLSEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTT 348


>gi|168483688|ref|ZP_02708640.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172042968|gb|EDT51014.1| integrase [Streptococcus pneumoniae CDC1873-00]
          Length = 380

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 102/361 (28%), Gaps = 52/361 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPY------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +GK  ++ R       +L                     L     ++           T 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKIKQKLGEKQHSVSNITF 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP 130
           + L  E+ ++     +  ++  + ++   +I+++  GD+  R I  + ++  ++      
Sbjct: 68  EKLYEEFEENWK-HGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLLQDG 126

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP---------------KRKTEGIR 172
            S          +  + K+A+R  Y+  N  L VE P                   +  +
Sbjct: 127 RSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEFK 186

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
            + +    +    +      R+A    L +G+R  +      +   +             
Sbjct: 187 LFIQNLKDEALCDYRITKYIRIAKVLFL-TGMRYGELAALNYKEDIDFSKKTIHIKHTYD 245

Query: 228 KTGTIITVELPDGFMKLLAMTP-----------------IGKETFFINNDKQKMNATQFS 270
                 T        +++                        +  FIN   + +   +  
Sbjct: 246 FRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIENATNGFDTDFIFINTLGEPITNARVI 305

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              K    K G+ K  + H  R    ++ A+ G     +M   G        E Y+    
Sbjct: 306 CALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQ 365

Query: 328 R 328
           +
Sbjct: 366 K 366


>gi|125624913|ref|YP_001033396.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493721|emb|CAL98709.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 404

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 101/373 (27%), Gaps = 59/373 (15%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + + + + G  +Y            G   R  +   +  T       A+         +
Sbjct: 13  NIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTV 72

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +        L + +  S     +  N+     ++    I+   G++   KITT  ++
Sbjct: 73  AREKVSFDNFNALATSWFDSYKLT-VKANTIRINSNFLKNYILPALGNYKVEKITTVLLQ 131

Query: 121 SGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           + V       ++A      +           L  ++ +  + ++   ++ NP + V  PK
Sbjct: 132 NIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVISDNPAIKVFSPK 191

Query: 166 RKTEGIRPWTKEDMQ---------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            KT  ++     +                 +   +    ++ LL +GLR  ++       
Sbjct: 192 LKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLRICEALALSWSD 251

Query: 217 LQNNIF---------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------ 255
           +                        +   +   V +    + +L      +         
Sbjct: 252 IDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHD 311

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
               +  ++                KA V     HG R   A++  +      E+    G
Sbjct: 312 SLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLG 371

Query: 313 WKTVDQAE-TYTK 324
                     Y+ 
Sbjct: 372 HADYSITMNLYSH 384


>gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
 gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella
           tarda ATCC 23685]
          Length = 345

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 85/321 (26%), Gaps = 43/321 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+ +          ++   +    TL  L+  + +       
Sbjct: 24  KQGKRVR-RKFSTKGEALAFENYTLQKIEDSPWLGDGKD-TRTLSDLVHLWFERHGI--- 78

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSS 132
              +       +S         G     + + +   +    R              +P +
Sbjct: 79  ---TLRDGEKRKSAMLWAAECMGSPLATEFSAQLFTAYRAKRLDGKFARTQRVAVVSPRT 135

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEG 189
                      F    R  E+ A NP  +V + +     +   T E + Q  ++   S  
Sbjct: 136 MNLEHAYFLAAFNELKRLGEWSAPNPLENVRQFRVDESEMAYLTIEQIDQLLYECRNSSA 195

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           S      +  L +G R S++       +     +    K     T+ L    +  L    
Sbjct: 196 SDLETIVKICLATGARWSEAENLRRSQISAGKVTFIKTKGKRNRTIPLDLKLIGELPKKN 255

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAH 305
               T                  F+    +AG++  A    H +R   A+     G    
Sbjct: 256 GALFTPCYY-------------AFRNALERAGIDLPAGQLTHVLRHTFASHFMMNGGNIL 302

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 303 VLQKILGHTDIKMTMRYAHFA 323


>gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B]
          Length = 358

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFVTKGEALAFERHTMEETEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 62  KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 119 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 178

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 179 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 239 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|295838196|ref|ZP_06825129.1| phage integrase family site-specific recombinase [Streptomyces sp.
           SPB74]
 gi|197696665|gb|EDY43598.1| phage integrase family site-specific recombinase [Streptomyces sp.
           SPB74]
          Length = 393

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/347 (10%), Positives = 84/347 (24%), Gaps = 45/347 (12%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            +  +R   G +    +P+        ++       K       ++   +      E+ K
Sbjct: 22  WVVRWRTVSGPQAEESFPYNRKTEANALAIKVEHDKKMGVYEDRKQSQRSFDDCWKEWLK 81

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136
              +G+   ++   +E  +         D     I    +    +    R +  +     
Sbjct: 82  ---FGNREPSTISQYEGLYKNHYWNFFKDRRIGSIVHSDLVKWEDDQKRRGYKGTGIKTR 138

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLA 195
           L  ++   K+    + V           +R          +           E  +P L 
Sbjct: 139 LVILKSFLKYCYDADIVPRYAAKGPRMGRRDDVLRTIGLDEIPTTGEIIALQEAMRPELK 198

Query: 196 FEFLLYSGL---------------------------------RCSDSCRAGVQHLQNNIF 222
               + +G                                          GV+       
Sbjct: 199 ATIWIQAGCGLRVGEALAFSESHLTRKPGWYFVQNQLTTFGANSGAGRGTGVKAEPKWDR 258

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             +    G  +   L +           G             + T ++  +     KAG+
Sbjct: 259 YGRWVPVGLPVGGVLQEHKRLYTPWGEAGWYFESPTRAGHHPSRTTYTNRWNEAIEKAGL 318

Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                +   +R + A+++   G    E+    G K+ +  E  Y   
Sbjct: 319 KEKGYTPKSLRHYFASMAIAGGVPVWEIAKWMGHKSTETTETVYAHV 365


>gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase
 gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa]
          Length = 333

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 30/322 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + GK     +Y     GRRIR       +    Y               + R     L
Sbjct: 3   VRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYE-----QDFFAVKGETGRPLDDRL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             L+  +    H  +L         +  + + ++ G+    +  +       + R  +  
Sbjct: 58  SDLVKVWYD-LHGCTLKDG--KQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRLTEVK 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +       +  +F   +R         L    + K     +   + + + +       
Sbjct: 115 PETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLEECKA 174

Query: 189 GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +           L +G R  ++       +          K     +V +PD   +L+ 
Sbjct: 175 STNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRIKNRQSRSVPIPDELERLIF 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302
              +        +             F+    + G  ++     H +R   A+     G 
Sbjct: 235 KVGMPGSGRLFMSC---------RAAFRCAYQRCGF-QTPGQMTHILRHTFASHYMMGGG 284

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 285 DILTLQRILGHSSITMTMRYAH 306


>gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 324

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 81/289 (28%), Gaps = 33/289 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS 131
           +  Y         A ++     S   +          +   +IT   + + +E   H   
Sbjct: 13  VHYYLALCQAKGQAPDTLRGKRSGLKKFYLWCLPQQVYTIEQITLDLLDNYMEYLNHYRK 72

Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                          +T ++   +    +  ++ N    +E P       +        +
Sbjct: 73  LLDHQPLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSVTEIE 132

Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234
                S      G + R   E    +G+R S+     +  +      ++    K      
Sbjct: 133 KILAQSLLFGVHGLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQKERI 192

Query: 235 VELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK 284
           V + +   + L                       N+  ++ A Q S         +G+ +
Sbjct: 193 VPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLSGIKR 252

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +   H  R  +AT   D GA    +    G  ++   + YT    R +L
Sbjct: 253 TGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTH-VSRAKL 300


>gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605]
 gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605]
          Length = 397

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 87/334 (26%), Gaps = 30/334 (8%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 56  RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTL 113

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K L+  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 114 KDLVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEI 170

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 171 YFSEKWKKGASPVTVNLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 230

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 231 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 290

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 291 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 342

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              +G     L    G   +     Y      +R
Sbjct: 343 FMMSGGNILALQKILGHHDIKMTMRYAHLETALR 376


>gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +       +      G     +++   + S    
Sbjct: 19  QTLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRW 78

Query: 126 RKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EDETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           G    V +    +  L               ++    ++     +        AG     
Sbjct: 199 GKDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                     H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|300071713|gb|ADJ61113.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 393

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 101/373 (27%), Gaps = 59/373 (15%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + + + + G  +Y            G   R  +   +  T       A+         +
Sbjct: 2   NIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTV 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +        L + +  S     +  N+     ++    I+   G++   KITT  ++
Sbjct: 62  AREKVSFDNFNALATSWFDSYKLT-VKANTIRINSNFLKNYILPALGNYKVEKITTVLLQ 120

Query: 121 SGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           + V       ++A      +           L  ++ +  + ++   ++ NP + V  PK
Sbjct: 121 NIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVISDNPAIKVFSPK 180

Query: 166 RKTEGIRPWTKEDMQ---------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            KT  ++     +                 +   +    ++ LL +GLR  ++       
Sbjct: 181 LKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLRICEALALSWSD 240

Query: 217 LQNNIF---------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------ 255
           +                        +   +   V +    + +L      +         
Sbjct: 241 IDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHD 300

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
               +  ++                KA V     HG R   A++  +      E+    G
Sbjct: 301 SLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLG 360

Query: 313 WKTVDQAE-TYTK 324
                     Y+ 
Sbjct: 361 HADYSITMNLYSH 373


>gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 91/365 (24%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHNHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQQVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 355

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 10/265 (3%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K TTL  L+  Y            +  +F    D+I+  +    + +     +   +  R
Sbjct: 82  KETTLAELLQRYADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRKR 141

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ K          +E++   +   
Sbjct: 142 GNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEKAGRLRFLEADEEEVLFREIAS 201

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  L   FL+ +G R  ++       +     +    K+G   TV L       L 
Sbjct: 202 RSELYLYL-SIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDALK 260

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302
                    F   D+QK     +   + A    AG+    +   H +R   A+     G 
Sbjct: 261 RVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRGGI 315

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G +T++    Y   A 
Sbjct: 316 DLRRVQMWLGHQTLEMTMRYAHLAS 340


>gi|294839832|ref|ZP_06784515.1| putative phage integrase [Acinetobacter sp. 6013113]
 gi|294860234|ref|ZP_06798003.1| putative phage integrase [Acinetobacter sp. 6013150]
          Length = 383

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 101/366 (27%), Gaps = 53/366 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY--- 60
             LP  V   R R G I  YF R      I LP+P  +  I A     +    K E+   
Sbjct: 8   KSLPKGV---RIRSGAIQIYFERNKQAYNITLPHPPTAEGISAAAKIRSQLITKAEWGIL 64

Query: 61  --INSPRKKPTT--------------LKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103
              +    K  T               + +  +Y +       +   R  +    +   +
Sbjct: 65  TDKDIAEAKGETIDKKHLILNSNEVLFQEVAQKYLRQCEANLDS---RKGYVRILNCHWM 121

Query: 104 RKSGDFDYRKITTKHIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                    +IT   IR   ++    T  +    L  +R +F+ A+  + +  NP   +E
Sbjct: 122 PHFALRPINQITNDEIRDLIIDKNFKTAKTLNNSLIPLRGVFETAMNSKLILDNPMHGIE 181

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHL 217
             + +     P+++ +M     +     +         +E   +SG R S+        +
Sbjct: 182 NKRIQQAIPDPFSRAEMNALLKWLDVNLEGTNRLYYWYYELAFWSGCRPSELFALRWNDI 241

Query: 218 QNNIFSIKTQKTGTI------------ITVELPDGFMKLLAMTP-----IGKETFFINND 260
                +++  K+                 V L D   + L                    
Sbjct: 242 DWFNGTMRISKSRVRGYEKSVTKTHTVRDVYLNDRSTRALTEIQKLGLSRDYVMICPETG 301

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +                +     +  R   AT+    G     +    G  ++   
Sbjct: 302 LPFYDERPPRFRLNEAMKACRIRHRPAYNARHTYATMMLMDGVNPVFVADQMGH-SLQML 360

Query: 320 E-TYTK 324
              Y K
Sbjct: 361 MKRYAK 366


>gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
 gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter
           desulfuricans SSM1]
          Length = 321

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 82/286 (28%), Gaps = 35/286 (12%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESR------- 126
           + +     + + N+   +    D  I        + D   I   +I+  +  R       
Sbjct: 22  FIEDLRVRNYSNNTIELYSKEIDYFIEYSRGYVDEMDINDINRPYIQGSLAYREEISIKD 81

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-----------RPWT 175
             + ++   ++ +++  F +         +      + K  T+             +   
Sbjct: 82  SISSNTKQIYIKALKQFFIFITENNREYKDYTTIFRKIKIVTQTKEKEYLTEQEISKLLN 141

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
             ++ + +       +     + LLYSGLR S++ +      +    +        +   
Sbjct: 142 YLEVLKSRRESIVTFRNVFLIKLLLYSGLRISEALQLKFTDFEEIAINNTYYYQIKVKGK 201

Query: 236 ELPDGFM---------KLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN 283
              + +          + L ++             +  +                KAG+N
Sbjct: 202 GQTESYAYVPKELIEDEYLYLSESYSNKHNNIFITRNGSILKRQDAYKIITNIYKKAGIN 261

Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           K+  H +R   A    +AG     +      K V+    Y K   +
Sbjct: 262 KTGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVYAKSTQQ 307


>gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 330

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 76/262 (29%), Gaps = 14/262 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129
           L++ +  +      +  + I ++    +        +   I T  +R       + R  +
Sbjct: 55  LLTMFISAKQIEGCSGKTVIYYQETIGRFFAWI-KKEITLIDTDDLRLYLAEYQQERNVS 113

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +       +   F W   ++Y+  +P   + R K        +T E ++  +   SE 
Sbjct: 114 KVTIDNIRRILSSFFAWLEDEDYIVKSPVRRIHRIKTAKIIKEAFTDETIEVLRDTCSE- 172

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT 248
            +     E L  SG+R  +  +     +  N    I   K  +   V         L   
Sbjct: 173 VRNLAMVELLASSGMRVGELVKLNRTDINFNERSCIVFGKGSSEREVYFDARTKIHLWQY 232

Query: 249 PIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
              +            +              +     A +     H  R+  AT + D G
Sbjct: 233 LNSRTDDNPALFVSLRSPHKRLEIGGVEFLLRKLGRIAAIENVHPHRFRRTLATRAIDKG 292

Query: 302 ATAHELMATYGWKTVDQAETYT 323
               ++    G K +D    Y 
Sbjct: 293 MPIEQVQRLLGHKKIDTTMCYA 314


>gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 386

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 74/258 (28%), Gaps = 14/258 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---Q 135
           RK      L  +++ +  +    +       ++  +T   +    ++   +        +
Sbjct: 111 RKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKNLYESGYQTNTVAK 170

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
            +  ++     A+ + Y+  N         +  EG   +   +  +     S   +    
Sbjct: 171 HMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCL 230

Query: 195 -----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                AF F  Y+GLR SD      +++      +           E+      L     
Sbjct: 231 EHTLDAFLFCCYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKA 290

Query: 250 IGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
           +     +        +       +         A +  + S H  R  +AT+    GA  
Sbjct: 291 LTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANI 350

Query: 305 HELMATYGWKTVDQAETY 322
             +    G K +   + Y
Sbjct: 351 TTVQKLLGHKNLATTQIY 368


>gi|311279140|ref|YP_003941371.1| integrase family protein [Enterobacter cloacae SCF1]
 gi|308748335|gb|ADO48087.1| integrase family protein [Enterobacter cloacae SCF1]
          Length = 338

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 108/347 (31%), Gaps = 41/347 (11%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M    +       PP V +     GK  + +    G  I L               ++  
Sbjct: 1   MAGKRKNPEDRIFPPRVYR-----GKSKFEYHPAGGGSISLCPLDSP---------VSLV 46

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             K E     +++   L+ L  E+ +SA +  L+ ++R  +  Y ++++   G      +
Sbjct: 47  WAKYEEAKMKKEQSANLQSLALEFFESADFNKLSQDTRKDYTKYSNKLMPVFGKMAPDLV 106

Query: 115 TTKHIRSGVESRKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +HIR  ++ R     + A +    +  L+ WA  +  V  NPC  V + K        
Sbjct: 107 KPQHIRQYMDKRGVASQTQANREKAFLSRLYSWAYERGKVKANPCKGVRQFKEVERDRYT 166

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------HLQNNIFSIKT 226
             +E    +          ++A E       R  D               ++ +    K 
Sbjct: 167 TDEEYDALYSVSPVV---VQVAMEIAYLCLARQKDVLTLKKSELLEPGIFIEQHKTGKKQ 223

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----- 281
            K  +           +L     +         D QK     F+  ++A   +A      
Sbjct: 224 IKAWSDRLRAAIALAKELQLKAGMSSIYVLHKADGQKYTRDGFNSRWEAAREEARKKFPH 283

Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              + + H ++    +       T  E     G KT+ Q   Y +  
Sbjct: 284 LSFDFTFHDLKAKGVSDL---EGTLQEKQQISGHKTITQTARYDRKV 327


>gi|149008030|ref|ZP_01831578.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
 gi|147760438|gb|EDK67415.1| putative integrase [Streptococcus pneumoniae SP18-BS74]
          Length = 380

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 109/361 (30%), Gaps = 52/361 (14%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRK--KPTTL 71
           +GK  ++ R       +  ++    E     A   +A+      ++ +   +      T 
Sbjct: 8   NGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKIKQKLGEKQHFVSDITF 67

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP 130
           + L  E+ ++     +  ++  + ++   +I+++  GD+  R I  + ++  ++      
Sbjct: 68  EKLYEEFEENWK-HGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLLQDG 126

Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP---------------KRKTEGIR 172
            S          +  + K+A+R  Y+  N  L VE P                   +  +
Sbjct: 127 RSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEFK 186

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
            + +    +    +      R+A    L +G+R  +      +   +             
Sbjct: 187 LFIQNLKDEALCDYRITKYIRIAKVLFL-TGMRYGELAALNYKEDIDFSKNTIHIKHTYD 245

Query: 228 KTGTIITVELPDGFMKLLAMTP-----------------IGKETFFINNDKQKMNATQFS 270
                 T        +++                        +  FIN   + +   +  
Sbjct: 246 FRQKERTTPKTIKSDRVITAPQKVLDIIKEQIIENATNGFDTDFIFINTLGEPITNARVI 305

Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
              K    K G+ K  + H  R    ++ A+ G     +M   G        E Y+    
Sbjct: 306 CALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQ 365

Query: 328 R 328
           +
Sbjct: 366 K 366


>gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12]
 gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12]
          Length = 358

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 86/333 (25%), Gaps = 63/333 (18%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK----- 127
           I+E+ +  +    +  +  S+  +             D+ KI   ++ + V   +     
Sbjct: 28  ITEFIRYLNNVDKSPFTVKSYAHHLKLFWEFLVSRQLDWTKINLSNLAAFVGWLRELKDE 87

Query: 128 ------------HTPSSAIQFLTSMRVLFKWAV------------RQEYVAINPCLSVER 163
                         P++    L  +   +++              +         L    
Sbjct: 88  SAVIDIIEDRSARKPATINVILGCLSSFYRYHNQLGNTDVTITESKNLPGNRYKALLHHV 147

Query: 164 PKRKTEGIRPWTKEDMQQ-----------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
            K K    R  +   +++             +      + R     L  +GLR   +   
Sbjct: 148 FKNKPVQRRIISVRQVKELPKTITDEQLVQLNEACSNYRDRFLVALLFETGLRIGQTLAL 207

Query: 213 GVQHLQNNIFSIKTQKTGTIIT------------------VELPDGFMKLLAMTPIGKET 254
             + +      I  +     +                   + L   ++  L    +G   
Sbjct: 208 RHEDIICWNNEIHIKYRTNNVNQVRNKSYKSNTLHVSNYVMNLYSEYVSSLDQNRLGDYV 267

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F   N  + +        F   + K G     H +R   A+    AG     +    G  
Sbjct: 268 FINLNTYEPLCYPAIKKLFVNLSQKCGFYIRPHMLRHTHASSLVRAGWDMALVQKRLGHT 327

Query: 315 TVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
           ++     TYT      +      +   S  +++
Sbjct: 328 SIQTTVNTYTHIDT--KQMKDAFKSYISKKENN 358


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 32/274 (11%)

Query: 85  GSLAVNSRISFESYFDQI--------------IRKSGDFDYRKITT----------KHIR 120
            + +  +  S++    +                +K    +  ++ T          +++ 
Sbjct: 2   RNYSQKTLSSYDLTIRRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLE 61

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R++  ++  + L+S+   +++ + QE V  NP   ++RPK K + ++   K    
Sbjct: 62  FLSLDRQYHATTYNRILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYL-KHSQV 120

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239
                     + RL    +  +G+R S+ C   V+ +  +   I+   K G +  V + +
Sbjct: 121 MRLLQSIPDERDRLMIRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGKGGKVRMVFVDE 180

Query: 240 GFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
             +  +A  +        F       ++     + FK     A    + H +R   A+  
Sbjct: 181 VTLNEIAGLIGNRLSGPLFPGQGGNHISVRTVQLIFKKY---APPGITPHKIRHSYASEL 237

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
                    +    G  ++   E Y     D  R
Sbjct: 238 YRRSRNLRVVQENLGHASIKTTEVYLHTDVDERR 271


>gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109]
 gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109]
          Length = 308

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 28/289 (9%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH- 128
           L  ++         ++ ++  ++    D ++  +   G     +I    +R  + +    
Sbjct: 14  LCGDFALHLRAQRGVSEHTVRAYLGDVDHLLNHAVRQGVTRVDEIDLTVLRGWLAAMAAA 73

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + ++  +   + R  F+WA     V+ +P L +   +           E + +     
Sbjct: 74  DLSRATVARRAAAARTFFRWATHTSRVSADPTLRLGTARAGGALPTVLALEPVTRLLDAA 133

Query: 187 SE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVEL 237
            E          +     E L  +G+R  + C A V  L     +++          V  
Sbjct: 134 RERAADGDPVHVRDWATVELLYATGVRVGELCGADVDDLDLQELTLRVVGKGDKQRVVPF 193

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVN-KSA 286
                + +           +  D            +++  Q        A   GV+  + 
Sbjct: 194 GRPAARAVGAWLATGRPRLVREDSCGALLLGRRGGRIDQRQVRTVVHELAALVGVDDVAP 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334
           H +R  +AT   + G+    +    G  ++   + YT   A+R+R   +
Sbjct: 254 HALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFE 302


>gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 404

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 85/280 (30%), Gaps = 27/280 (9%)

Query: 74  LISEYRKSAHW------GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRS 121
           L+  +R+            +   + + +E     +           D  +R I  + +  
Sbjct: 110 LLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFVEK 169

Query: 122 GVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                K   + A      +L  ++ +   A+  +++  NP   ++  + +T      T++
Sbjct: 170 FEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLTED 228

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++        +  +    R  F F   SGL  +D      +H+  +I      +     T
Sbjct: 229 ELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKT 288

Query: 235 VELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
             +    +      ++            N      +  + + + K  A   G+    + H
Sbjct: 289 NNMCHIPLLDIPAMIIEKYRKNPVCLQKNVVLPVPSNQRMNSYLKEIADVCGITKKLTTH 348

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             R   A  +     +   +    G   +   + Y K  D
Sbjct: 349 CARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 388


>gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5]
 gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5]
          Length = 392

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 102/341 (29%), Gaps = 32/341 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYM-SALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           Y +     +R +      +    A           +R       K   +      +Y K+
Sbjct: 67  YIYAHPKTQREKDYNARLTEKAEALRCRRYEEIVNERYEFFDRNKLNGSF----IDYFKT 122

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSA------- 133
                 +      +E  F    R  G    + ++T +     +E  + TP +        
Sbjct: 123 YASKKNS-----RYEQAFLHFDRFVGGKCTFGEVTVELCNKFLEYLRSTPQAIHQKRKLH 177

Query: 134 -IQFLTSMRVLF---KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                +           A R   +  NPC  +ER +         + E++ +      E 
Sbjct: 178 TNTIASYWSAFLGTLHTAHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARVAETPCEI 237

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM 247
              + AF F   +GLR SD      + +Q         T +      +       + L +
Sbjct: 238 PVLKTAFLFSCLTGLRKSDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQL 297

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
               +E       K  M        FK     AG+    + HG R    ++  DAG  + 
Sbjct: 298 IDGSREGLVFPGFKDSMT----QAPFKKWIKAAGITKKLTFHGARHTFCSLQLDAGTDSR 353

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            +    G K +   + Y    +  +   + + RI+    ++
Sbjct: 354 TVQELVGHKNLATTQRYLDSVNSRK--KEAANRITLKRAAE 392


>gi|238021359|ref|ZP_04601785.1| hypothetical protein GCWU000324_01258 [Kingella oralis ATCC 51147]
 gi|237868339|gb|EEP69345.1| hypothetical protein GCWU000324_01258 [Kingella oralis ATCC 51147]
          Length = 387

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 92/370 (24%), Gaps = 54/370 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           + K     GK +Y  +    R     Y    TF    ++A      + E   +P      
Sbjct: 4   IVKRINPSGKTVYRAQIRIDRAAYPKYAESRTFSERRLAAAWLKKREAELEANPELLYYG 63

Query: 65  --RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRS 121
             ++   TL   I  Y               +  +    +           KI    I +
Sbjct: 64  GKKQTIPTLAQAIERYFSEPAATEFG----RTKTATLKFLSGYPIAKLPLDKIRRADIAA 119

Query: 122 GVESRKH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +  R+          P +    L  +R + K A     + +N        +        
Sbjct: 120 HINQRRDGWGGFLPVKPQTVNNDLQYIRSMLKHAHFVWGLNVNWAEIDLAIEGARRARLI 179

Query: 174 ------------------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--------SGLRCS 207
                              T    Q      S      L   F +Y        + L   
Sbjct: 180 GKSEERMRLATAQELQALTTHFYQQWTTRPNSTKFPMHLIMWFAIYSCRREAEITRLAWV 239

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265
           D  +     L  ++ S    K      +        + A      +      + Q     
Sbjct: 240 DYDKTAGDWLVRDLKSPSGSKGNHARFLVNDKLRQVIAAFRQPEIQNRLKWREMQPETWL 299

Query: 266 ----ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
               +   S  F       G+ +   H +R   AT  A+ G T  ++      ++    +
Sbjct: 300 IGGDSKSISASFTRACKLLGIEDLRFHDLRHEGATRLAEDGLTVPQMQQITLHQSWKTLQ 359

Query: 321 TYTKGADRIR 330
            Y   A R R
Sbjct: 360 RYVNLATRPR 369


>gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1]
 gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1]
          Length = 410

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 103/391 (26%), Gaps = 77/391 (19%)

Query: 13  KERTRHGKII-----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           ++  R G+       Y FR     R R      +     Y          ++       +
Sbjct: 11  RKVLRKGESQRPDGTYQFRWTDENRKRHCIYARNLDDLRYKE--DEIDKDKKDGIKAEAR 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV--- 123
            T+L  +   +R       +  N+  +++  ++     + G      I    I+      
Sbjct: 69  YTSLNDMYELWRDLK--RGIKNNTFENYKYMYETFVRNQIGSQFIMSIKKTDIKRYYNSL 126

Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKE 177
            + R   P++     T +  +F+ AV  +Y+  NP  +      +    KTE  R  TK 
Sbjct: 127 VDDRHLKPATIDSIHTVLHQVFEMAVDDDYIRSNPTDNVLRELKKSHCFKTEKRRALTKP 186

Query: 178 DMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218
           + +   ++     E       F  ++ +GLR  +        +                 
Sbjct: 187 EQELFLEYLKNTPEAQYWYPIFAVMVGTGLRVGELTGLRWCDIDLEEGIIDVNHTLVYYD 246

Query: 219 -------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKET 254
                                                +     +LL +          + 
Sbjct: 247 HRTEGSKKGCYFNVNTTKTPAGMRQVPMLEFVKEAFLMEKERQELLGLHCEATVDGYTDF 306

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFSATISADA 300
            F+N   Q  +    +   +                      + S H +R    T   +A
Sbjct: 307 VFVNRFGQPQHQATLNKAIRRIIRNCNDKQFLESENPEVLLPHFSCHSLRHTFTTRMCEA 366

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           G     +    G K V      YT     +R
Sbjct: 367 GVNVKVIQDALGHKDVSTTLNIYTDVTKELR 397


>gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 396

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 90/363 (24%), Gaps = 49/363 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +            P       +    +       +    P  K 
Sbjct: 24  RYAYKYTDTFGKPQFVYAWKLVP--TDKTPKGKREDKSLREKVKEIQKDLDDGIDPVGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L  ++ ++    ++   ++   +     +     G      +     +      K
Sbjct: 82  MTVCQLYEKHIRNHA--NVRHGTKQGRKQLMRILEKDTIGACSIENVKMSDAKEWALRMK 139

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQF 182
                  +      S++  F  A++ + +  NP         +  TE   P +    +  
Sbjct: 140 EKGYSFITISNHKRSLKAAFYTAIQDDCIRKNPFDFHINTVIEDDTEPKIPLSPMQEESL 199

Query: 183 KSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            SF          +     LL +GLR S+ C      +     +I               
Sbjct: 200 LSFVKSDKVYYKYYDELIILLGTGLRISEFCGLTDSDIDFENRTINVDHQLQYSGKKSYR 259

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSI 271
                       + + D  ++ L      +       D               N   + I
Sbjct: 260 IETPKTENGIRKIPMSDRVLEALQRVMQNRRKSDFTVDGYTGFLFLTRNGTPQNYINYDI 319

Query: 272 WFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            F+    K             + H +R    T  A+AG     L    G   +     Y 
Sbjct: 320 MFRKLVEKYNKKHEEVLPVVTTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNYY 379

Query: 324 KGA 326
             A
Sbjct: 380 AHA 382


>gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 421

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 94/298 (31%), Gaps = 28/298 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSG----- 107
           K +  ++P+ K  T+      +     +    G +   +   +    +++ +        
Sbjct: 103 KPKKEDAPKHK--TILEAFDYHNLKMLEKVKAGQVVAKTHARYIITRNKVEKFIKKQFKT 160

Query: 108 -DFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D    ++    +           +   ++A +++ +++ +   AV  +++  NP    +
Sbjct: 161 NDKALPEMRLAFVTEFEHYLLTVERIQSNTAHKYIKNLKKIMNMAVGLDWIPSNPFNHFK 220

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                        ++++    +      +    R  F F  Y+G   +D  +   + +  
Sbjct: 221 C-SYTNPEREILNQDELNIIMNKKLHTERLEEVRDVFIFCCYTGFAYADVYQFEKEAVMK 279

Query: 220 NIFSIKTQKTGTIITVELP-----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            +       T    T            ++++A     +     N      +  +++ + K
Sbjct: 280 GLDGNLWLSTARQKTGTKESVPLLPIPLEIIAKYQEHEYCKKYNKLLPVNSNQRYNSYLK 339

Query: 275 AKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                 G+NK  ++H  R   AT      G     +    G   +   + Y K  ++ 
Sbjct: 340 EIVDLCGINKKLTSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQK 397


>gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media]
          Length = 310

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 82/297 (27%), Gaps = 52/297 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDNGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V    
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTM 310


>gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17]
 gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 78/263 (29%), Gaps = 17/263 (6%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I +K    D    ++T + I        + +     ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVDDKGLAIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191
           L  ++ + + A ++ Y           PK++ +  +  ++E  ++         +     
Sbjct: 189 LAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIHDLVIPEHRSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTP 249
            R  F F  Y+G   +D+      +L  +       K             +  + L +  
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIE 308

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
              +           +        K  A  A +  + + H  R   A++   +AG     
Sbjct: 309 KYNDDTRPTLFPMLYHPN-LRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   +   + Y K   + 
Sbjct: 368 ICKMLGHSNLQTTQRYAKVTPKK 390


>gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765]
 gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765]
          Length = 404

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 111/402 (27%), Gaps = 73/402 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNKSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELTKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T     +E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACNEWLEHYKTHSGSKPTTIKEKKSNANTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE- 177
           + +     + S       +  +R +FK+A +   +     L      +K +       + 
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAKR 182

Query: 178 --------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                                     ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLECFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             NDK               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNDKFTDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                +    G        E YT   D+  +      ++ ++
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLENI 402


>gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 408

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 93/321 (28%), Gaps = 26/321 (8%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y++A          I   R      K    +Y +     +    +   +E    ++I   
Sbjct: 89  YVTAELVKNAFLGKIARERTLIEFFKQHNEQYLQKVKM-NTTDKTYSRYELTKKRLIEFM 147

Query: 107 G------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                  D   + I    I         +   + ++A++F+   R +  +A +   +   
Sbjct: 148 KFKYSVSDMLIKDINVVFIEDFLLYIKNNYGCSHNTAMKFVQRFRTVVNFA-KNTGLVTA 206

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAG 213
                 R K +       T E++    +      +    R  F F  Y+ L   D C   
Sbjct: 207 DPFGSYRVKFERTDRDYLTMEEITAIYNHKFCTKRLEQVRDLFIFSCYTALSYIDVCELR 266

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQF 269
            + ++                       ++LL +     E +       K+    +  + 
Sbjct: 267 QEDIRTGFDGNLWI--IRKRHKTNVTSTVRLLDIPKAILEKYKDKLPNGKILPVISNQKM 324

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGA 326
           + + K  A   G+ K  + H  R   AT      G     +    G   +   + Y +  
Sbjct: 325 NDYLKEIAAICGIEKNLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARIT 384

Query: 327 DRIRLGIKNSRRISSVVDSDD 347
           D       +   ++  +D+  
Sbjct: 385 DLK--VSNDMEMLAQKLDATH 403


>gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606]
 gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606]
          Length = 410

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 98/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R Y     ++ TT   +   + +        +++ +S   +               
Sbjct: 92  LEKIRSYFVGKDREYTTFLPVFDRFNEDIRQRVGHTISKDSLQKYSVLRRHFSEFLIHKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ + +++ +  +A ++ Y+  +P L+
Sbjct: 152 GRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKELAIQRLELVRDVFIFSCFTGLAYIDVSNLRPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPRSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 286

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 88/262 (33%), Gaps = 17/262 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           LI  +         + +SR S+       +         +IT   I     +   ++ P+
Sbjct: 14  LIQMWL-----HGKSPDSRRSYMRDIQDFLE-FTHKPIEQITIADIIDWDSALALRYAPT 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S  + L +++ LF +A + E ++ NP  +V  PK K         ED  +   +     Q
Sbjct: 68  SRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYAEPNRQ 127

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELPDGFMKLLAM 247
            +L    L  +  R S+ C    + ++             K      V +     ++L  
Sbjct: 128 HQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLWQVLKA 187

Query: 248 TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           T      G    F+N   +  +  Q     KA   + G+   S H +R   AT     G+
Sbjct: 188 TKAADAKGDSPLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQLINGS 247

Query: 303 TAHELMATYGWKTVDQAETYTK 324
             H      G   ++    Y  
Sbjct: 248 PLHLQQQELGHSGLNTTSKYLH 269


>gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22]
 gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22]
          Length = 423

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 86/298 (28%), Gaps = 20/298 (6%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--- 106
           A+      +    + +        ++  ++        A ++   +E  + Q+ +     
Sbjct: 110 AIEVKNAFQGIATAQKTLLILFGEMMENFKGRIGI-DRAQSTYKQYEVLYKQLKQFLREE 168

Query: 107 ---GDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D    ++    I +        RK  P +    +  +  + + A+ +  +   P  
Sbjct: 169 YHVEDIPLAELDLPFIEALNFFFRVKRKMKPRTVKARIVLLNKVIRLALHRRIITRPPFD 228

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQH 216
             E  ++     +  T +++        +    R   +  L+   +GL  +D  +   + 
Sbjct: 229 GFE-LEKTELKNKSLTNDELDLLMKTPLKSGTQRFIRDMFLFSTFTGLAYADVHKLSWKD 287

Query: 217 LQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
           +          +       T          + +    K           M+  Q ++  K
Sbjct: 288 IITEDDGSLWISANRQKSHTEFNVKLLNIPIRIMEYYKGLAPDGKVFPHMSLGQVNVGLK 347

Query: 275 AKATKAGV--NKSAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A   G+    S H  R   A+      G     +    G K ++  + Y +  +  
Sbjct: 348 RIARNCGINRKLSYHMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEK 405


>gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 397

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 97/365 (26%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N+  +   A  ++
Sbjct: 260 IETPKTKSGTRQVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYT 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A+      +L    G   +      
Sbjct: 320 MLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 308

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 27/288 (9%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           + +   +          + ++  ++ +   ++I   G             ++    +R  
Sbjct: 13  RDIAVAWADHLRRDRRRSEHTVRAYLATAHRLIAFLGRHRGAAVDGALLARLDRGDLRGY 72

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPW 174
           +  R+    +  S  + L+++R    +   +           P +    P+         
Sbjct: 73  LAERRGEGLSNVSTARELSAVRNFLDYVAEREGAAKPVKVKGPRIKKGVPRPVAPDDIAA 132

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             ED  +  +     ++       L  +GLR  ++       L        T K      
Sbjct: 133 IAEDAAESAAEPWIAARDEAVLLLLYGAGLRIGEAMALTGDILPLGDTLSVTGKRAKTRI 192

Query: 235 VELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
           V +     + +                 F       +         +A   + G+    +
Sbjct: 193 VPMLAPVREAIERYVALSPHGAAPGEILFRGARGGPLAPELIRRAMRAARVRLGLGERTT 252

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H +R   AT     GA    L    G  ++   + YT G D   L  
Sbjct: 253 PHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYT-GVDAAHLMD 299


>gi|71906676|ref|YP_284263.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71846297|gb|AAZ45793.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 338

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 17/330 (5%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
                     +  R     +      +   L       E      K   + K  +  + +
Sbjct: 12  WWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQM--WEQNRLGVKARRSWKEAVVRWLE 69

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVESRKHTPSSAIQFLT 138
                     +    +     +    G     +IT   I      + ++   ++  ++L 
Sbjct: 70  ETSEK----ATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATTNRYLA 125

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            MR +     R E+  I+    V   K      R  T+E   +           R    F
Sbjct: 126 LMRSIL-LRARDEWEWIDKVPKVRLFKESASRERSLTREQAGKLLE--ELPQHQRDVVLF 182

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETF 255
            L +GLR S+  +     +             +     +     +      +   GK   
Sbjct: 183 ALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKHES 242

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
            +   + K   +  +  ++    ++G++    H +R   AT    AG   HEL    GW+
Sbjct: 243 RVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWR 302

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           T    E Y   A       + + R++SV+ 
Sbjct: 303 TGAMVERYAHLAPDH--LAEAASRLNSVIP 330


>gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
 gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192]
          Length = 333

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 30/322 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
             + GK     +Y     GRRIR       +    Y               + R     L
Sbjct: 3   VRKDGKTWTADFYENGRSGRRIRKKGFATKSAAIRYE-----QDFFAVKGETGRPLDDRL 57

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
             L+  +    H  +L         +  + + ++ G+    +  +       + R  +  
Sbjct: 58  SDLVKVWYD-LHGCTLKDG--KQRLARCEALAKRLGNPLAFEFDSLAWARYRQRRLTEVK 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +       +  +F   +R         L    + K     +   + + + +       
Sbjct: 115 PETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSLDQVARLLEECKA 174

Query: 189 GSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            +           L +G R  ++       +          K     +V +PD   +L+ 
Sbjct: 175 STNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRSVPIPDELERLIF 234

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGA 302
              +        +             F+    + G  ++     H +R   A+     G 
Sbjct: 235 KVGMPGSGRLFMSC---------RAAFRCAYQRCGF-QTPGQMTHILRHTFASHYMMGGG 284

Query: 303 TAHELMATYGWKTVDQAETYTK 324
               L    G  ++     Y  
Sbjct: 285 DILTLQRILGHSSITMTMRYAH 306


>gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 371

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 83/309 (26%), Gaps = 38/309 (12%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKIT 115
           + P  L  L+  +  +       ++ ++  S+   F  +++ +               + 
Sbjct: 2   RDPANLAALLQSFFTTRLMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLD 61

Query: 116 TKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              +          R +   S    LT++R  F++A  +          V     + +  
Sbjct: 62  ASLVGAFLEDLENRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRR 121

Query: 172 -------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                  RP  +  +         G +        + +GLR S+      + +     + 
Sbjct: 122 ALVGFLTRPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAH 181

Query: 225 KTQKT--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKA 277
              +          L      +L      +                ++A           
Sbjct: 182 VRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARHV 241

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +A  +         S H +R  +A      G     +    G ++V+  + Y   AD  
Sbjct: 242 AQARKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYL-DADLA 300

Query: 330 RLGIKNSRR 338
            L  +   +
Sbjct: 301 -LKEEALAK 308


>gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065]
          Length = 205

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 71/195 (36%), Gaps = 14/195 (7%)

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSD 208
            V+ +P L  E PK +    +  + E++ +  +  +   +G + +   E +  +G++ ++
Sbjct: 1   MVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITE 60

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262
                +  +      IK + +      + +    +K L      +    + N        
Sbjct: 61  LLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNL 120

Query: 263 ---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              +M    F    K  A +A ++K   ++ +R   A      GA    +    G K + 
Sbjct: 121 KGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLA 180

Query: 318 QAETYTKGADRIRLG 332
             + Y+  + + ++ 
Sbjct: 181 ATQIYSSISKKSKIA 195


>gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 295

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 79/274 (28%), Gaps = 34/274 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           L  LI  + +  H   L+       +   D I R+ GD               E R    
Sbjct: 8   LSDLILRWYE-LHGRMLSSG--AGRKGKLDAICRRLGDPLAGDFDKGMFARYRERRLNGE 64

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +   ++  +    +  +F    R  E+   NP   + + +   + +     ++
Sbjct: 65  WNPKGKKRLQEATVNREQAYLHAVFAELRRLGEWEGGNPLDGIRQFREGDQELAFLYADE 124

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + +  +     S+  L       L +G R S+        +     +    K+    TV 
Sbjct: 125 ITRLLAACDASSKADLGGIVRVCLATGARWSEVQSLRQSQVLPGRLTFTHTKSKKNRTVP 184

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292
           + +    LL        T                  FKA   +AG++       H +R  
Sbjct: 185 ISERLQALLPTKQGRLFTPCYE-------------AFKAALARAGLHLPKGQRTHVLRHT 231

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A+     G     L    G  T+     Y   A
Sbjct: 232 FASHFMMQGGNILVLQQILGHSTITMTMRYAHFA 265


>gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
 gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC
           43183]
 gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC
           43183]
          Length = 401

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 91/303 (30%), Gaps = 21/303 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              +  +      S    +   + R+  ++    IS +++     SL  +++ +  S   
Sbjct: 77  KKELELWQQGKRISLELLKDALATRENNSSF---ISFFKQEVSNSSLKDSTKRNHLSTLL 133

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV----RQEYVAIN 156
            +     D  +  +T + + S     +            M+ L +       ++      
Sbjct: 134 LLQEFKRDIVFSDLTFEFVSSFEYFLQQKGYHTNTIAKHMKHLKRHINIAINKEYIEIQK 193

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCR 211
                 + K           E+++Q +         +L     AF F  Y+G+R SD   
Sbjct: 194 YAFRKYKIKTVENKHTHLVPEELEQLERLSLTDKHMKLQKSLDAFLFCCYAGMRYSDFTN 253

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNA 266
              +++ +             +           L         + K    + +  +  + 
Sbjct: 254 LSKKNIVDINQET--WLIYKSVKTGTEVRLPLYLLFAGKGIVILNKYRNNLEDFFRLRDN 311

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +      A  AG+    S H  R  +AT+    G     +    G K+V   + YT 
Sbjct: 312 SNINKDLIIIAKLAGLSKKISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTN 371

Query: 325 GAD 327
             D
Sbjct: 372 IMD 374


>gi|289168844|ref|YP_003447113.1| phage-related integrase, recombinase [Streptococcus mitis B6]
 gi|288908411|emb|CBJ23253.1| phage-related integrase, recombinase [Streptococcus mitis B6]
          Length = 388

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/389 (11%), Positives = 122/389 (31%), Gaps = 70/389 (17%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +                 +   S 
Sbjct: 3   ITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQ--KEVKQKANQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K  T++    L + + +S    ++  N++ +  +   + I+   G++   K+TT  I+
Sbjct: 61  RQKAITIRNYQELATLWWESYK-NTVKPNTQGNVRALIDNHILPTFGEYKLDKLTTPLIQ 119

Query: 121 SGVESRKHTPSSAIQ----------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           S +         A +           + ++ + + ++ V  + +  NP   V  P+   +
Sbjct: 120 SIINKLADK---ANRGEEGAFLHYDMIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQK 176

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHL- 217
             R   K    Q    +        + ++  Y           +G R +++       + 
Sbjct: 177 AKRQKLKHFDNQELKKFLVYLDNLDSCKYRYYYDVTLYKFLLATGCRINEALALSWSDID 236

Query: 218 ------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------- 257
                          +     +   +   +++    + +L    + +             
Sbjct: 237 LDNAIVHVTKTLNQYLEINSPKSKSSYRDIDIDQETVSMLKQYKLRQTKEAWKIGQRESV 296

Query: 258 ---NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
              +   +  +  +          +A V     HG R   A++  ++G    EL    G 
Sbjct: 297 VFSDFIHEYTSIVKLKKRLLTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQHRLGH 356

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISS 341
             +     TY+       L  +N+++  S
Sbjct: 357 SQISMTMDTYSH------LSKENAKKAVS 379


>gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18]
 gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18]
          Length = 328

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 98/313 (31%), Gaps = 36/313 (11%)

Query: 70  TLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----- 121
           TL  L     EY++     +L+  +  +F+  +   +      D        +       
Sbjct: 9   TLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRADCMPTEVDKTLLED 68

Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWT 175
                +    +  SS    L  +  + + A+++ YV  +P     +E P  +   +    
Sbjct: 69  YRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIETPTYERNALTADD 128

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
            + +  ++   S  +  RL F    ++GL  SD  +  +  +       +          
Sbjct: 129 LQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQ 188

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAH 287
             ++       + +           +   +   + + F+   +    KAG+      ++H
Sbjct: 189 NRSIVPLLPVAEKILAIVSHGRREGLFFREFP-SNSNFNRTIQEICIKAGLLPHTQATSH 247

Query: 288 GVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK-----------N 335
             R   AT I  + G     +    G + +   E Y +   + ++  +            
Sbjct: 248 TARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAKEMQPLMGSEHTRV 306

Query: 336 SRRISSVVDSDDP 348
            R+   +  S  P
Sbjct: 307 LRKALRLCPSRTP 319


>gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 329

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 97/314 (30%), Gaps = 19/314 (6%)

Query: 18  HGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            G+     R     G+R++     +     A+  ++  +    E+ +  R    +L  + 
Sbjct: 8   GGRYKVDIRPQGREGKRVQ-RVFKKKADALAFERSVMLTANSDEWNSESRDYR-SLSEIF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
             +       +   ++  + +    +II   G+    +IT K +      R  +    S+
Sbjct: 66  QIWW-IYKGRNNKYST--NRKRTVTKIINDMGNPSVYQITPKLLGQYRSDRLQSGVKAST 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             + L  +  +F         +    +      ++ +    +  +   +      EG   
Sbjct: 123 VNRELNLLMGIFTSLAEIGECSKTNPIKGLSKLKEEKPEMSYLTKSDIEKLLNAVEGDYW 182

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           R      L +G R  ++ +   ++L +   +    K G   TV + D  MK + +   G 
Sbjct: 183 R-ITVLCLSTGARWGEATQLRAENLLHGRVTFMKTKNGRHRTVPISDEVMKAVKIKESGL 241

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                           +    K         ++ H +R   A      G     L    G
Sbjct: 242 LFNAD--------YETYRAILKNVKPDLPHGQAVHALRHTFAAHFMMNGGNILTLQKIMG 293

Query: 313 WKTVDQAETYTKGA 326
             T+ Q  TY   A
Sbjct: 294 HATIQQTMTYAHFA 307


>gi|301029172|ref|ZP_07192295.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
 gi|299877900|gb|EFI86111.1| phage integrase, SAM-like domain protein [Escherichia coli MS
           196-1]
          Length = 326

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 102/320 (31%), Gaps = 20/320 (6%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALT---GSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
            G+   L          A  + +    G   K            TL   +  Y K     
Sbjct: 1   TGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASR 60

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143
            +   + I++ S    I R   D     ITTK I + +     +   +SA    +++   
Sbjct: 61  GIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDA 120

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
           F+ A+ + ++  NP  +    K +    R    E ++ +++  S     RLA E  + +G
Sbjct: 121 FREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTG 180

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----- 258
            R  D C      + +    ++  KTG  I +        L        +          
Sbjct: 181 QRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDALGISMKETLDKCKEILGGET 240

Query: 259 ----NDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMA 309
                 ++ +++   S +F      +G+       + H +R  SA    +   +      
Sbjct: 241 IIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSA-RLYEKQISDKFAQH 299

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K+   A  Y     R 
Sbjct: 300 LLGHKSDTMASQYRDDRGRE 319


>gi|221369879|ref|YP_002520975.1| integrase [Rhodobacter sphaeroides KD131]
 gi|221162931|gb|ACM03902.1| integrase [Rhodobacter sphaeroides KD131]
          Length = 332

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 22/321 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
               G R R       T   A + AL     +           TT++ L + Y       
Sbjct: 17  WWEDGARRRYRL-DARTRAEAEVEALDRIRRETLP-----AGATTVRDLWAAYLADRKGR 70

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVL 143
            +      +  S  + ++   G     +IT +  RS  ++R+ T S  +    L  +R  
Sbjct: 71  PVE----RNMRSSGNVVLPHFGALRPDQITPEACRSYTKARRKTVSVGTVWTELGHLRTC 126

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
             WA ++  + +     +ERP +     R  T  ++ +      E    +LA   LL + 
Sbjct: 127 LLWAAKRGLIQV--APHIERPAKPAPRDRYLTHAEVSRLMEAECE-PHIKLAITVLLTAA 183

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            R           +      I+ +               +  ++    +           
Sbjct: 184 ARVGAVLELTWDRVDLERGQIRLRVDAEGPRKGRATVPINNTLRAALTSARAAALSDHVI 243

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +            F    + AG+ + + H +R  +A   A+AG    E+    G   V  
Sbjct: 244 EWAGGPVKCIRKGFLRAVSNAGLSDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQI 303

Query: 319 A-ETYTKGADRI-RLGIKNSR 337
               Y + + +  R       
Sbjct: 304 TSSVYARFSPQHLRKAADALE 324


>gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 291

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 84/281 (29%), Gaps = 26/281 (9%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQ 135
                  L+  ++ ++     +  R  G          +    +   +     +P S   
Sbjct: 17  DDMRMRQLSPKTQDTYLRIVREFARFLGRSPDTATVEDLRRYQL--HLVDHGTSPVSLNH 74

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +T ++  F+  + +  + +     +   +         + +++++         + + A
Sbjct: 75  AITGLKFFFEVTLDRPDLMV----RMHPVRVPRTLPVVLSPDEVRRLIEAAG-NLKHQTA 129

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------------LPDGFMK 243
                 +GLR S+     V  + +   +++ ++                    +     +
Sbjct: 130 LSVAYGAGLRASEVVALKVTDIDSQRMTLRIEQGKGRRDRYAMLSPVLLERLRVWWHVAR 189

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
                P G   F   +    ++  Q +    A A  A ++K    H +R   AT   +  
Sbjct: 190 AQGRMPDGGWLFPGLDPVDPLSTRQLNRAIHAAAEAAQIDKRVSMHTLRHSFATHLLEQK 249

Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
                +    G   ++    Y + A D +        R+ S
Sbjct: 250 VDIRVIQVLLGHAKLENTALYVQVATDLLHEVTSPLDRLPS 290


>gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 431

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 79/290 (27%), Gaps = 29/290 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 KSRAEGTYLNLYYSDKNLRDFIENKGVQDISIVTITESLFEEYRFFLKKRGLKASTVNTN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV    +  N   + +  K + +    +      +        E    RL
Sbjct: 181 LCWLSRLMFRAVSSRIIRCNSFENAKYEKEEKKIRFLQKGDVMKLMAMTMNDRESELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI 250
            F F  ++G+  +D      +H+Q      +  +     T            + +     
Sbjct: 241 MFVFSCFTGMAIADMETLQYRHIQTAADGQRYIRKERQKTKVEFIVPLHPVAEAIISHCR 300

Query: 251 GKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            ++                  +   + +             G+ +    H  R    T+ 
Sbjct: 301 NEQARNEEQQTVKEKGDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSYHMARHTFGTMC 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  D          R+ +   +++
Sbjct: 361 LSAGIPIESIAKMMGHTSISSTQIYAQVTDNKISKD--MDRLIAKQSANE 408


>gi|307268102|ref|ZP_07549490.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|295113806|emb|CBL32443.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
 gi|306515743|gb|EFM84270.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 378

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 110/349 (31%), Gaps = 41/349 (11%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +   R     Y   ++K  G   +L      T   A  +A       ++ +    K+ 
Sbjct: 1   MARFIKRGNSWQYEISYKKQDGTHSKLRKSGFKTKREAKEAADEIEYNLKKGLQ-GDKQN 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
             L     ++        ++  +   ++   + I R   +    ++T    +  +     
Sbjct: 60  ILLSEYFKDWMNLYKKDVVSEITYRKYKDTLNNIERYMPNIILSQLTRPLYQRYLNKFAE 119

Query: 129 TP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFK 183
               S+ I+F   +R   K AV +  +  +P        ++++     +     D ++  
Sbjct: 120 EHMKSTVIKFNNHIRASLKDAVEEGLILFDPTRKAVIKGKESDKTKNDKFLDYGDFKRLM 179

Query: 184 SFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQN--------------NIFSIK 225
               +G  P  A   ++     +G+R ++        +                     K
Sbjct: 180 ELAEKGIDPHYASPIMVVVAGATGMRFAELLGTTWNDINFEDEIIDIHKTWNYKMNCWGK 239

Query: 226 TQKTGTIITVELPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIW 272
           T+   +I  +++     +LL                   +   F N+    ++    + +
Sbjct: 240 TKNESSIRKIKIDFHTAQLLKEYKKAQKELFDKLEIQNPENFIFYNSQNGLISNNAVTKY 299

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + K ++ GV    + HG+R   A++    G     +    G  ++D  
Sbjct: 300 LRKKLSEIGVTKKFTLHGLRHTHASVLLYQGCDTIYVSKRLGHSSLDTT 348


>gi|163851291|ref|YP_001639334.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163662896|gb|ABY30263.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 429

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 101/356 (28%), Gaps = 47/356 (13%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTG-----STPKREYINSPRKKP 68
            G+ +YY          RR+ L    + T   A   A+T                 R+K 
Sbjct: 36  SGRRVYYADYRTAAGMRRRMSLGEHGKLTVDEARRLAITTLGDVIRGDDPIEERVTRRKS 95

Query: 69  TTLKWLISEYRKSAHW--------GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHI 119
            T+  L   Y ++A                + +S     +  I+   G    R +TT  +
Sbjct: 96  LTIAELCRRYLEAAGAGLVLGRGRKPKKATTLVSDRGRIEHHIVPLLGSRLVRDLTTAEV 155

Query: 120 RSGVESRKHTPSSAIQFLT--------------------SMRVLFKWAVRQEYVAINPCL 159
           +  V   +    +A ++ T                     +  +  +A+ +  +A+NP  
Sbjct: 156 QRFVRDVQ-AGRTAKRYKTKARGMVLVEGGAGAAARTAGLLGGIMSYAIGEGVIALNPVR 214

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-----LYSGLRCSDSCRAGV 214
            V+RP  + +  R   +E     +                       +G R  +      
Sbjct: 215 GVKRPADRKKDRRLSPEEYRALGRVLAEAEGDRESWQAVSSIQLLCLTGCRMREIANLRW 274

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIW 272
             +      ++   T    ++         L      +          +           
Sbjct: 275 TEVDFAGRCLRLDNTKEGRSIRPLGQAAVALLRQIEERRAGPYVLPATRGEGGFGGIPDA 334

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +  + +AG+    AH +R   A+ +AD G +   + A  G         Y    D
Sbjct: 335 IERYSKRAGLPGIGAHTLRHSFASTAADLGCSDSTIGAMLGHAGHGVTSRYIHHLD 390


>gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
 gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 107-1]
          Length = 392

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 86/330 (26%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+       T  + ++        TL
Sbjct: 53  RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEETESKPWLGESVD-RRTL 110

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++  + K  H  SL    +  ++     ++   G+     +T+K      + R     
Sbjct: 111 KDVVELWFK-LHGKSLTAG-QHVYDKLL-LMVDALGNPLATNLTSKMFAHYRDKRLTGEI 167

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +P +     + +  +F    R    +    L   R     E    W   +
Sbjct: 168 YFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHE 227

Query: 179 MQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +   P LA      L +G R  ++       +     +    K     ++ 
Sbjct: 228 QIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIP 287

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +                       F    +  +      +  H +R   A  
Sbjct: 288 ISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRGQLTHVLRHTFAAH 339

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 340 FMMSGGNILALQKILGHHDIKMTMRYAHLA 369


>gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 284

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 90/269 (33%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--- 128
           + ++ +       + N+   +       ++      D +++++  ++++  +   +    
Sbjct: 2   LEQFERYLWEEGKSENTVKGYLQSVAGFLKWFNESKDVEFKQLHRENVQEYISFLRTVKN 61

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG----IRPWTKEDMQQFK 183
             P +    L ++    ++ +  +          +  K + +            +  +  
Sbjct: 62  AKPKTINTKLNALVKFNEFLIEMKVQRDMVLTKKDYMKVQQQYASLAKVELKDVEKFRQL 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
              S   +       L Y+GLR S++    +      +    +++ K      V + D  
Sbjct: 122 VLDSGNKRNYALVTLLAYAGLRISEALSLKMNDFNLVSREIIVRSGKGNKFRVVFMNDKV 181

Query: 242 MKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
              L      ++         F++N  ++++ T  +  FK  +   G   + H +R F  
Sbjct: 182 KAALQSWLKERKEKGIESEYLFVSNRNKRLDRTTVNKLFKEYSEHIGKEITPHDLRHFFC 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           + +   G + HE+    G   +     YT
Sbjct: 242 SHAISRGLSVHEVANQAGHSNIHTTLLYT 270


>gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 391

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 90/380 (23%), Gaps = 62/380 (16%)

Query: 17  RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++G   Y       +  +G+ IR  +  +S                     +   + TTL
Sbjct: 9   KNGTNYYRITASVGKDSNGKLIRKEFYGKSKKDAE--EKRDEYLNGLGNGLNHDYEKTTL 66

Query: 72  KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRK 127
             LI  +          +   +   +E  F   I   +        I +  I+    +  
Sbjct: 67  GTLIKTWLYEVVRISNKIKPTTFSRYEGVFRNYIETSELYSLRLGTIKSIQIQRYYNNLY 126

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    SS       M+  F +AV   Y+  NPC   +             + +    + 
Sbjct: 127 DSGKTTSSIKYLNKLMKQFFNYAVDGGYMLKNPCDGKKIVIPGEVKSETEDELEYFSGEE 186

Query: 185 FWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------ 221
                        +      L +GLR  +        +                      
Sbjct: 187 IEKLKLAANDHSLKGLILVALGTGLRRGELLGMDWSDIDKENLTISIERTVIKTYIIDSD 246

Query: 222 ----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------------ 265
                    Q   T  ++       KLL++    K        +   +            
Sbjct: 247 GSRVRKNIVQIPKTKTSIRTVSFPEKLLSIFEEVKAKQDEYKARFPESFAENEFDFVFTS 306

Query: 266 -------ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                  +T  S  +     K  +  K  H +R   AT     G     +    G     
Sbjct: 307 STGNLLDSTNISHSWDNLLEKNNIPHKKFHALRHTFATQLFSKGIPTEVVSKLLGHSDPA 366

Query: 318 -QAETYTKGADRIRLGIKNS 336
              + Y       R+     
Sbjct: 367 LTRKIYIHVIPEQRVSSIAI 386


>gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A]
          Length = 333

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 78/314 (24%), Gaps = 37/314 (11%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIR 120
           L  LI  +          ++ N+  S+   F  +        G        R +    I 
Sbjct: 7   LAVLIERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIG 66

Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +E  +     +  +    LT++R  F++A  +E         V     K    R    
Sbjct: 67  AFLEDLETLRSASVRTRNLRLTAIRSFFRYASFEEPAHSAQIHRVLAIPSKRCDKRQLQF 126

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-- 227
                              G +          +GLR S+        +     +      
Sbjct: 127 LTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRHSVMLGHGAHVRCVG 186

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV 282
           K     +  L     + L               F N    K++A            KA  
Sbjct: 187 KGRKERSTPLTKVAQQALRGWLNEPRKRGATALFPNMHGSKLSADGVQALLNKYVAKARE 246

Query: 283 NK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333
           +         S H +R  +A     AG     +    G + ++   TY     +     +
Sbjct: 247 HCVTLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAHLELKESAL 306

Query: 334 KNSRRISSVVDSDD 347
              +          
Sbjct: 307 AKLKPYERAKAERF 320


>gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 291

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 79/276 (28%), Gaps = 23/276 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T+  L                ++  +     +     G       T + +R       
Sbjct: 5   TQTISPLRQRMIDDMRMRKFTAKTQNGYLRAVKRFAGFLGRSP-DTATVEDLRWYQLHLV 63

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +P S    +  ++  F   + +  +         +P R  + +      +      
Sbjct: 64  DTGTSPISLNAAIAGLKFFFDVTLDRAELMAKM-----QPVRVPQRLPVVLSREEVGRLI 118

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFM 242
             S   + + A      +GLR S+     V  + +   +++    K        L    +
Sbjct: 119 AASGNLKHQTALSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPVLL 178

Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
           + L +                 F   N  + ++  Q +    A A +A ++K    H +R
Sbjct: 179 ERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSTRQLNRAIHAAAAEAKIDKRVSMHTLR 238

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              AT   +       +    G K +D    YT+ A
Sbjct: 239 HCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVA 274


>gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574]
          Length = 448

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 29/285 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 129 RSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTINSN 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   K    E    RL
Sbjct: 189 LCWLSRLMFRAVSKRIIRCNPFENTKYEKEEKKIRFLQKSDVMKLMAMKMNDKEAELARL 248

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  SD      +H+Q      ++  K ++   +  +       + +     
Sbjct: 249 MFVFSCFTGLAISDMENLENKHIQTTADEQMYIRKERQKTKVEFIVPLHPIAEAIISHCQ 308

Query: 251 GKETF-----------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            ++                   +  + +             G+    S H  R    T+S
Sbjct: 309 KEQERSEEYLLVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMS 368

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             AG     +    G  ++   + Y +  D+     ++  R+ + 
Sbjct: 369 LSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISEDMDRLIAK 411


>gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 410

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 79/270 (29%), Gaps = 20/270 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLT 138
             +   +            D          ++    I       +      P++A + + 
Sbjct: 130 AATLQKYNVCKKHFSNFLRDKYGRSDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
           + + +     +   +  +P L++     +       T E++ +  +      +    R  
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRF-HMEPVNRGFLTDEEILKIANKDFGIGRLELVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--E 253
           F F  ++GL   D      +++                +VE     + +          +
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           T+        +   + + + K  A   G+ K  + H  R   AT+S   G     +    
Sbjct: 309 TYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKML 368

Query: 312 GWKTVDQAETYTKGADRI--RLGIKNSRRI 339
           G   +   + Y +  ++       + + ++
Sbjct: 369 GHTNIKTTQIYARITNKKIEHDMDELADKL 398


>gi|118444090|ref|YP_878186.1| integrase/recombinase, putative [Clostridium novyi NT]
 gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT]
          Length = 274

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 78/263 (29%), Gaps = 27/263 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSGVESRKHTPSSAIQ 135
             +  +  S+    +Q                  D  +     I      R     +  +
Sbjct: 16  RKSGKTIDSYIRDINQFNEYIKVNKKKLNKINNSDIDEYKNHLIY----DRGLKIKTINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193
            L S+    K+      +        E+ + +       + ED++   +     +  + R
Sbjct: 72  KLVSINQFLKFNNITVDI------RQEKVQMQNFLDDILSNEDVKALVNATYKKDDLRAR 125

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIG 251
                L Y+G+R S+  +  +  ++    +I  K  K   +          +      I 
Sbjct: 126 AIIYTLYYTGMRVSEMLQLTIYDIKKQSITILGKGSKHREVFVPNKLKDIWEAYMNVRIK 185

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
           K T      +  +N        K  A  AGVNKS   AH  R       AD G     + 
Sbjct: 186 KGTALFTGKRGPINRKTVDSLIKEYAALAGVNKSKAHAHNFRHLYCKNLADKGIDISTIA 245

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G + ++    YT+      L
Sbjct: 246 DIAGHQNINTTRIYTRKTKEELL 268


>gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606]
 gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606]
          Length = 382

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 89/279 (31%), Gaps = 21/279 (7%)

Query: 66  KKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116
           K+ TT   +  +Y  S       +L   +   ++                 D    ++T+
Sbjct: 104 KEFTTFLPVFDKYIDSITQQVGKTLTKGTFYKYKVVRQNFQDFLQAKYHRKDIGLTELTS 163

Query: 117 KHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             ++              ++  + L +++ +  +A  +  +  +P  + +    +     
Sbjct: 164 AVVQDFELYLTSVVGGVHNTTTKKLRNLKTVVNYARNRSLIMHDPFANHK-LHYELVDRG 222

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227
             T+E++ +      E  +  L    F F  ++GL   D        +    +   + T+
Sbjct: 223 YLTEEEVLRIMKKHFEIERLELVKNIFIFSCFTGLAYIDVYNLTYDKIVTVEDRQWLITK 282

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
           +  T +   +    + L  +                M+  + + + K  A   G+ K  +
Sbjct: 283 RYKTSVDENVMLLDIPLAIIRKYYDINRKGGKVFPMMSNQRINSYLKEIADLCGIKKNLT 342

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT+S   G     +    G   +   + Y +
Sbjct: 343 FHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYAR 381


>gi|307710326|ref|ZP_07646767.1| phage integrase family protein [Streptococcus mitis SK564]
 gi|307618918|gb|EFN98053.1| phage integrase family protein [Streptococcus mitis SK564]
          Length = 388

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 118/373 (31%), Gaps = 55/373 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + + G ++Y            G++++     + T       A+       +  ++ 
Sbjct: 3   ITEYKKKDGSVVYRSSVYLGIDTVTGKKVKT-TISDRTKNRLKSKAIQAKVEFEKNGSTV 61

Query: 65  RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            K    TT + L   + ++    ++  ++ I  ++     ++   GD+   K+T   I+ 
Sbjct: 62  IKTVNVTTYQELTELWLENY-CHTVKHSTLIGAKNNIKKYLLPAFGDYKLDKLTPPIIQH 120

Query: 122 G-------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                               Q     + +  +AV  + +A NP   +  P+RK +  +  
Sbjct: 121 QVNQWAIDYNQLGKGYQQYNQLHALNKRILSYAVSLQVIASNPASDIIVPRRKPKQGQKL 180

Query: 175 TKEDMQQ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---- 221
              D                  +     + ++ LL +GLR  +        +        
Sbjct: 181 KYLDDDNLKKFLDYLDQLPNTYKNFSDTVLYKTLLATGLRIRECLALKWSDIDLQNGSIS 240

Query: 222 -----------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF- 269
                       S K++ +   I ++     M  L      +    I    +K+ +  F 
Sbjct: 241 VTKTLNTLKEITSPKSKSSIREIALDTKTVLMLRLYKARQSQIGREIGVTFEKLFSDTFD 300

Query: 270 --------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                       +     AG  + S H  R   A+I  +AG    E+    G   +    
Sbjct: 301 NYREAGALRFRLEKHLKLAGCPRLSFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTM 360

Query: 321 -TYTKGA--DRIR 330
            TY+  +  ++ R
Sbjct: 361 DTYSHLSKENQKR 373


>gi|85372971|ref|YP_457033.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786054|gb|ABC62236.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 389

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 99/354 (27%), Gaps = 25/354 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREY 60
           P   +     G+  Y  ++  G + RL    ++  +   ++                   
Sbjct: 34  PGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARRLILRIELGQNPAD 93

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTK 117
                KK  T    +  Y +     +   ++      +      +          +I+  
Sbjct: 94  RKQRGKKTPTYAAFLRHYWE-VAAPAWKPSTLEIHDIYRRT--HLEHAFAGKFIDEISHA 150

Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      T  P +A + +  ++ +F  A    Y+  +        + K   I  + 
Sbjct: 151 DAVRWHAMLTRTAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNKGRKIERFL 210

Query: 176 KEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +              ++          L  +G R  +        +Q     +   KTG
Sbjct: 211 SQAEMARLGEALSQHRADKPNEVAVISLLALTGCRRGEILNLTWGEVQGRKLKLTDTKTG 270

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
             +     +    +  +            D   ++      +++    +AG+ +   H +
Sbjct: 271 PRVIWLGKEARAVIDRLPRRRGHERVFQFDVLPVS--AIDWFWRMLRVEAGIEDLRLHDL 328

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSV 342
           R   A+++A +  T   +    G + V     Y    DR  L   ++  +I   
Sbjct: 329 RHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSLIATRHVGKIIEH 382


>gi|312952945|ref|ZP_07771801.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
 gi|310629086|gb|EFQ12369.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0102]
          Length = 387

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 101/376 (26%), Gaps = 59/376 (15%)

Query: 9   PFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           P + + +   G   + ++         G  +R                  L     + E 
Sbjct: 2   PTIQQYKKSDGTTAWLYKVYMGKDPMTGKEKRTTRRGFKTKKEAS---LDLARFQLEIES 58

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119
               +    T   L   +  S H  ++   +    +++F +QI+   G      IT    
Sbjct: 59  NGISQHSIKTFSELYDLWM-SQHVKNIRNTTEQRIKNHFTNQILPSFGKMKLEAITPATC 117

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +  +        S  +  +    +F + +    +  NP      PK   +      +   
Sbjct: 118 QKILTEWSMKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHDSAEIEAEFYT 177

Query: 180 QQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------ 221
           ++    + +        +    F    Y+G R  +      + +  +             
Sbjct: 178 KEELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVEL 237

Query: 222 -----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------- 269
                    T+   +  T+ + DG + +L           ++   +  N           
Sbjct: 238 SDGSLCINPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNIDDVPVISTIK 297

Query: 270 -------------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                        +      A K    K    HG RK  AT+  +AGA   ++    G  
Sbjct: 298 ANKKRDFLYKGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHS 357

Query: 315 TVDQAE-TYTKGADRI 329
           +       Y + +   
Sbjct: 358 SSKTTMDIYIQVSKNR 373


>gi|303326887|ref|ZP_07357329.1| integrase [Desulfovibrio sp. 3_1_syn3]
 gi|302862875|gb|EFL85807.1| integrase [Desulfovibrio sp. 3_1_syn3]
          Length = 360

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 108/355 (30%), Gaps = 26/355 (7%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +P F    + +   + Y     +  R++     E     A+  A      +   I    K
Sbjct: 1   MPVFYLAYKRKPWIVKYREPWTNKPRVKSFGKDEEEKARAFERAQADLYEREREIIRRAK 60

Query: 67  KP--------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +          T+  L+  Y  +        ++R + + +    +   G      I+ + 
Sbjct: 61  RRRAAQAPAGITVDDLLQRYMDTLSN----PSTRAANDYHLRLFLSIYGHRKAHCISMED 116

Query: 119 IRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           + +       R    S+A + +  +R  + WAVR   +++NP   ++      +   P T
Sbjct: 117 VAAFLELQAKRGVGKSTACRRVGIVRTAYTWAVRWGLLSVNPLAGLQLSSPTPQTPDPPT 176

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
             + +   +  +   Q  +A      + +  S+  R     +   +  ++          
Sbjct: 177 AREARMLFATAAPHLQRVIAIGMATGARIGPSELFRLRWTDVDTRVAVLRMPNASKGAPL 236

Query: 232 -IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK--SA 286
               V L    +++L                          S  +     +AG+++    
Sbjct: 237 EAREVPLRSDLLRMLRQWEKEDAALGCPWVIHYKGRPVRSISRAWHNTLRRAGISRRIRP 296

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNSRRI 339
           + +R   A+ S D GA    +    G          Y     R  R  I  +  +
Sbjct: 297 YDLRHAFASRSLDHGAELKCVAEIMGHANEKMIVRFYRHTNPRARRKAINAAPSL 351


>gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 390

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 36/333 (10%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           ++G+   +  R     R       + +   AY+S LT +     +++  R    T+  L 
Sbjct: 23  KYGRGKRWLVRWVDESREHSKSFDKKSDATAYLSELTTARNTGRFVH-ERAGRVTVAALW 81

Query: 76  SEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
            E+  +A  G L+  +  S E +Y   ++ +        I    +R+ V           
Sbjct: 82  GEW--TAQAGHLSQKTIASRETAYCCHVMPRWAGVTVGDIRVTAVRAWVADMAQAGVGVP 139

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  + +  +R L + AV    ++ NPC++V+ P+R        +   +Q      +   +
Sbjct: 140 TIERAVGVLRGLCELAVDDRRISANPCVNVKLPRRSHPDRAYLSVPHVQALAEAITFRPE 199

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSIKTQKTGTIITVE 236
                E L Y+GLR  +     V                          T KT    +V 
Sbjct: 200 ---VVELLAYTGLRWGEMAALRVSDFDMLRRRVDVSRSVTEVRGHLVWGTPKTHERRSVP 256

Query: 237 LPDGFMKLLAMTPIGKETFFINN--------DKQKMNATQFSIWFK--AKATKAGVNKSA 286
            P    + +A    GK    +                   F    K   +A     + S 
Sbjct: 257 FPAVLAETIAPLMAGKGRDDLVFTAESGGVLRNSIWRPRVFDKAVKGCQRADDTFPSLSP 316

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           H +R  +A+++  AGA    +    G       
Sbjct: 317 HDLRHTAASLAISAGANVKAVQRMLGHAKASMT 349


>gi|326407773|gb|ADZ64844.1| phage protein, integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/395 (13%), Positives = 123/395 (31%), Gaps = 62/395 (15%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R      S  +       A+         I
Sbjct: 2   NIKEYIKKDGTKVYRTNVYLGVDSLTGKQVRTSVSANSRKMCDIKARQAINKFINNGSTI 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +      + L   + +S     +  NS  S ++Y    I+   G +   KIT   ++
Sbjct: 62  AREKVVFDNFESLALSWFESYKLT-VKANSIRSVKNYLKVYILPAIGTYVLPKITPMLLQ 120

Query: 121 SGVESRKHTPSSA---------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           S V       +++                  L  ++ +  + V+   +  NP + V  PK
Sbjct: 121 SIVNDWSKNANTSEITSGKREKGKGKNYKIMLNIIKRILDYGVQLGAINDNPAIKVFPPK 180

Query: 166 ---RKTEGIRPWTKEDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              R    I+ +  ++++ F  +        E       +  LL +GLR  ++       
Sbjct: 181 LKVRTVSKIKYFDDKELKMFLEYLESLEPSIENQLHNALYRLLLATGLRIGEALALNWSD 240

Query: 217 LQN--------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF------ 256
           +                       +  G+   + L +  +++LA     +          
Sbjct: 241 IDFSEKLVNVTKTTLQSREVQDSPKTKGSNRIISLDNTTLQILANWRKFQNNHNKVIGLS 300

Query: 257 ----INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
                + D Q++          +    A +     HG R   A++  +      E+    
Sbjct: 301 DSVVFSYDGQRLIYESERARLSSHLESARLPNIGLHGFRHTHASLLMNNDVNPKEIQERL 360

Query: 312 GWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           G   +    +TY+  A   +   + + + S+++ +
Sbjct: 361 GHSKITTTLDTYSHLAKDKK--KETAEKFSNILKA 393


>gi|257438450|ref|ZP_05614205.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
 gi|257199029|gb|EEU97313.1| site-specific recombinase, phage integrase family [Faecalibacterium
           prausnitzii A2-165]
          Length = 384

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 105/364 (28%), Gaps = 46/364 (12%)

Query: 14  ERTRHGKI---IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G+        R   G+ I+  Y + + ++      +     +  Y  +  +   T
Sbjct: 9   RKRKDGRWEGRYIKARTPEGK-IQWGYVYGTAYVEVKRVLIQRKAEEGFYNLN--RTDLT 65

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV------ 123
            + L   +  S    S+  ++   +       ++          +    +   +      
Sbjct: 66  FEALAEVWLHSLR-NSIKESTYAHYSYTLHKYLLPVLSKVPIASLEESFLERAMQQIVAP 124

Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                +    SSA + L+ +R + K+A     +     L V  PK   +   P +  + Q
Sbjct: 125 TDAAHKPLGNSSARECLSMLRRICKYA-AHLRLIRPMELEVALPKASDKISAPLSPAEQQ 183

Query: 181 QFKSFWSEGSQPRLAFEFLLY---------SGLRCSDS-------------CRAGVQHLQ 218
           +   +      PR     L            GL+  D              CR    +  
Sbjct: 184 RLHQYVQANPTPRKIGLLLGLELGLRIGEICGLQWGDFDLKLGTLKINRTVCRISCGNGH 243

Query: 219 NNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
             +     +   +   + +P+     +K L         F   ++ +      +    KA
Sbjct: 244 TKVVIQTPKTRTSRREIPIPNQLLIMLKKLRGKASNAAWFLSGSESKPTEPRCYRKSIKA 303

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-ADRIRLG 332
              +A V +   H +R   AT    AG     L    G    +   + Y      R R  
Sbjct: 304 YLKQATVRQVRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRRE 363

Query: 333 IKNS 336
           +   
Sbjct: 364 MNRI 367


>gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans]
          Length = 339

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 77/301 (25%), Gaps = 48/301 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +  ++ S+  + I  SG     ++    + + +         +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYLSWIRRFILASGRRHPAQMGQAEVEAFLTRLATDGQVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------------EGIRPW 174
             +  Q L ++  L++  +R E   +   +  +RP+R                 EG    
Sbjct: 78  AGTQNQALAALLFLYREVLRIELPWMENLVRAKRPRRIPVVLSREEVARLLAALEGPCWL 137

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
               +        E  + R+         +   D      + +       +  +      
Sbjct: 138 MASLLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERA 197

Query: 235 VELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQ---------------- 268
           + L    +            LA                                      
Sbjct: 198 LLLHAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSAPQSRDPRSGRVGRHHVSEE 257

Query: 269 -FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +     AG+    + H +R   AT   +AG     +    G K V   + YT  
Sbjct: 258 VLQRAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317

Query: 326 A 326
            
Sbjct: 318 L 318


>gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri]
          Length = 320

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R+        + +   +  +  + IR       +++  + I + +       + S
Sbjct: 7   LLDQMRERIRLKHYFIRTERVYCEWVKRFIRFHQYRHPQEMGAQEIEAFLTELAVARNVS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + +     V R K+        T E+++   +     S+P
Sbjct: 67  ASTQNQALSALLFLYKEVLSIDLPWLADVVRAKKPQRLPVVLTVEEVRSALA--QLESEP 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK------- 243
            L    L  +G+R  ++ R  V+ +  +   I  +  K        LP   ++       
Sbjct: 125 WLVCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRRHLA 184

Query: 244 ---------------------LLAMTPIGKETFFINNDKQKMNA---------------- 266
                                 LA         +        +                 
Sbjct: 185 VVKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVDPRSGVVRRHHLD 244

Query: 267 -TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +    FK     A +    + H +R   AT   ++G     +    G   V     YT
Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304

Query: 324 KGADR 328
              +R
Sbjct: 305 HVLNR 309


>gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925]
 gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum
           BKT015925]
          Length = 272

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 81/266 (30%), Gaps = 13/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTP 130
           + E+ +  +       +  ++++   + I         ++ T  +R   +      + +P
Sbjct: 5   LDEFIEYLYQEDKGEKTIYTYKNDIKRFIEYFQKNKL-EVNTIELRKFKDYLLQGLQLSP 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + + ++R    +    +       +  +        I   ++      ++  S   
Sbjct: 64  KTVNKNIVAIRKYLDFIHINDVNIKMIKIQDQGFLDD---ILTNSEAMRMIKEADKSHDL 120

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +     L Y+G+R S++    V+ +  +   I  +       +              +
Sbjct: 121 RAKAFICTLYYTGMRVSEAISVLVKDIDEDSIRILGKGKKYRTVLIPKKLQRIWGDYMTV 180

Query: 251 GKETFFINNDKQKMNATQFS--IWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
                      Q+   ++F+     K    KA V K     H  R        D G    
Sbjct: 181 RVNNSDKLFTGQRGGISRFTALNMVKKYGGKAKVKKDKVYNHAFRHLFCMNLVDKGIPID 240

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331
            +    G  ++     YT+ + +  L
Sbjct: 241 VVKDLAGHASILTTNIYTRRSKKQLL 266


>gi|282860505|ref|ZP_06269571.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282564241|gb|EFB69777.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 415

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 94/387 (24%), Gaps = 67/387 (17%)

Query: 14  ERTRHGKI----IYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + + G+      Y  R     G      +P     +     A T +   R     PR  
Sbjct: 21  RKVKSGRYGVGSRYRARYVGPDGTEKSKSFPDRQKRLADQWLAHTEADMARGQYIDPRAA 80

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT +     +  +        N++ S ES          G          HIR  V+  
Sbjct: 81  RTTFQQYAEGWVST---QGADPNTQASMESQLRLHAFPYLGTRPLGSFQPAHIRDWVQQL 137

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S A    +++R     AV   ++  NPC +        +  R       + F 
Sbjct: 138 QANGVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDTKRVTPWTAERLFA 197

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
                  + +   +     GLR  +     V  +     ++   +               
Sbjct: 198 VRAGMPERYQAMVDLGGGCGLRQGEILGVAVDAIDFRSDTLHVVQQLKLSRSKPVFAPPK 257

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------------------QKMNATQ 268
            G +  V LP      L           I                             + 
Sbjct: 258 GGKLRDVPLPGPVADALRAHMKQFPPVEITLPWKAAGGPLVTKRLIFTGPRGGHVWRTSL 317

Query: 269 FSIWFKAKATKAGVNKSA--------------HGVRKFSATISADAGATAHELMATYGWK 314
               +K     AGV  +               H +R F A++  DAG     L    G  
Sbjct: 318 NEEAWKPALASAGVIPTPAAGAQHTESRENGMHAMRHFYASVLLDAGENVKALAEYLGHS 377

Query: 315 TVD-QAETYTK----GADRIRLGIKNS 336
                   Y        +R R  +   
Sbjct: 378 DPGLTLRVYAHLMPSSRERTRKAVAAV 404


>gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC
           BAA-613]
          Length = 321

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 82/260 (31%), Gaps = 12/260 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            ++ + K     +++ N+  ++           G  +   ++   +        + P + 
Sbjct: 55  YLNAFHKYLIQHNMSPNTITAYIYSVRHFFTYFGQLNSNNVSLYKVYLLD---HYQPQTV 111

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + ++    K+    +Y      L  ++    T+ I      +  + +    E     
Sbjct: 112 NMRIRALNCFLKFQGISDYRIRALRLQQKK---YTDYIISQADYEYLKRRLREDEQYTFY 168

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPI 250
               F+  +G+R S+     +Q + N    I ++              +  ++ L     
Sbjct: 169 FIIRFITATGVRVSELISFQIQDVINGYKDIYSKGNKMRRVYIPTALQEDTLRWLESEFR 228

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                F+++ K+ ++ +      K  A +  ++      H  R   A    + G     L
Sbjct: 229 KNGPLFLSHLKRGISVSGIRSQLKTFAYRYHLDPKVVYPHSFRHRFAKNFIENGGDIAFL 288

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G  +++    Y + + 
Sbjct: 289 SNLLGHTSIETTRIYLRRSS 308


>gi|56694872|ref|YP_164382.1| integrase [Bacillus phage BCJA1c]
 gi|52631299|gb|AAU85051.1| integrase [Bacillus phage BCJA1c]
          Length = 369

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 105/354 (29%), Gaps = 38/354 (10%)

Query: 17  RHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + GK   Y   R   G+   +      T   A  +A       R+ +    K        
Sbjct: 6   KRGKTWQYTVSRTVDGKSQPIRKGGFKTKKEAQAAAAEVEAELRKGVTPHLKLEP-FDEY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
              + K      +  N++  +++  + I    G    ++I  +  ++ +    R H  ++
Sbjct: 65  FESWMKLYK-SDVTNNTKERYKNTLETIKNYFGSKPIQQINKRTYQAFLNEYARTHARAT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  T +R   K A+ +  + ++           K K +  +     D Q+      E 
Sbjct: 124 TKKLNTHIRACVKDAIDEGVIRVDFTRKASISGDNKAKKDDEKHLHYRDSQKLLQAVYER 183

Query: 190 SQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------- 237
               L    +L    SG+R ++      +       +I   KT                 
Sbjct: 184 LDKSLTHYIILLALTSGMRFAEIVGLKREDFDFKQNTISINKTWGYTKKMHEGFGPTKNE 243

Query: 238 ---------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                           +    +L         +  ++  + ++    +   K+   +  +
Sbjct: 244 QSVRKIKMDVQTMKAFNNLFDMLPENIHQLVFYSPSSKYKVISNGNANKLLKSLLGELKI 303

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIK 334
              S HG+R   A++    G + + +    G   ++     Y      +R   +
Sbjct: 304 EPISMHGLRHTHASVLLYKGVSIYYVSERLGHADIETTMNEYAHIVKELRTQDE 357


>gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
 gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 23/266 (8%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFK 145
           +  +  ++ +                   +HI S  E  K T S  +A  +L ++R+ FK
Sbjct: 7   SPTTIRTYRTALASFFDWMALCGTDFPAREHIVSWKEYLKQTRSLATAQTYLAAVRLFFK 66

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYS 202
           W  R                 ++          +         G    +       ++  
Sbjct: 67  WTGRYGKYPDIASSVKGVKVGRSPKRDFLAPHQVLSVLDETKSGNSHLRDYSMILLMVTC 126

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---------GFMKLLAMTPIG-- 251
           GLR S+  +A V+ L +          G     +               + L        
Sbjct: 127 GLRVSEVAQANVEDLNHVGGEPVLYIHGKGRDGKTDFVNVPKKVASAIRRYLLSRGSPAG 186

Query: 252 ----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
                 +   NN   +M +   S   K     AG +    +AH +R  + T+S  AGAT 
Sbjct: 187 PSPLFASVSRNNGGGRMTSHSVSRIVKTMLKSAGFDSRRLTAHSLRHTAVTVSLQAGATL 246

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
            ++        +   + Y    ++ R
Sbjct: 247 QQVQQFARHSLIMTTQIYAHNLEQCR 272


>gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118]
 gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118]
          Length = 381

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 123/369 (33%), Gaps = 55/369 (14%)

Query: 12  TKERTRHGKIIYYFRK--------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
            K +T+ G +++ ++         G  +       +           +        ++++
Sbjct: 5   RKYKTKKG-MLWRYQILVGTDTVTGKRKYKTKGGFYTKKEAKLAADEIEKKISNPTFLDN 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
              +  T   +   +  +     +  +S  + E  +  +I+   G+    +ITT   +  
Sbjct: 64  ---ENITFGEVYDRWIVNYKLT-VKESSFYTVELQYKSKILPILGNKKINQITTIECQDL 119

Query: 123 VESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPC------LSVERPKRKTEGIRPWT 175
           +      P  +       +  +FK+A + + V  +P        +  +          +T
Sbjct: 120 INYWYSIPLKNYKAIFNLITRIFKYAKQLKIVTDDPTSSVIIPKASRQFNNLEHSRNYYT 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           +++++ F  +  +  + ++   F L  +SG+R S++       +      I   KT    
Sbjct: 180 RDELKTFLEYAEKHEKHKIYVLFRLLAFSGMRKSEALALTWNDIDFEKAQITINKTIILV 239

Query: 231 ------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------- 267
                       +  TV +    + +L    + ++   +      ++             
Sbjct: 240 SKVKVTTPKTKSSNRTVFIDKKTVSILREWRLSQKKELLQKGFNALSPNQLVFPDKNNHY 299

Query: 268 ----QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
                 S      +  + ++  + HG+R   AT++A  G +  +L A  G   V+   + 
Sbjct: 300 IIPTTISKMMNRVSEGSNLHHITVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDV 359

Query: 322 YTKGADRIR 330
           YT   D  R
Sbjct: 360 YTSITDEQR 368


>gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 177

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++ +       K  A +AG+    S H +R   AT   + GA    +    G  ++   +
Sbjct: 95  RLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQ 154

Query: 321 TYTK 324
            YT 
Sbjct: 155 RYTH 158


>gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 343

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 73/269 (27%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
              +  +   +        R   +     I   HI   + S     + P++    L  ++
Sbjct: 56  RRGSPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIK 114

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             F +  +   + +NP   V+ PK        R    E++Q+        +  R      
Sbjct: 115 SFFGYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCR 174

Query: 200 LY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L       +    S       + ++   ++    K      + +P      L +      
Sbjct: 175 LLFAAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALY 234

Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATI 296
           +                       Q +               A G   S H +R   AT 
Sbjct: 235 SIEPYQPAPGLDAVPLFPNRRVLTQPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATH 294

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
           S  AGAT  ++    G +++     Y   
Sbjct: 295 SRLAGATLEQIRVALGHESIQTTIRYEHS 323


>gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814]
 gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC
           27755]
 gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 412

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/338 (10%), Positives = 85/338 (25%), Gaps = 60/338 (17%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFD 110
             +  +       +++  TL     E+  +    ++   S     S Y++   +  G+  
Sbjct: 48  EKAKEEARNNIDMKRQKITLNEWFEEWFANYKIPNIKETSVFPMRSKYYNTFGKAIGNMK 107

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRK 167
              I    I+  +        ++     ++   R   + A     + INPC  +  P   
Sbjct: 108 VTDIRNLDIQRVINDMNKQGRASSSMRDALGRVRECLESAKNNRIIDINPCFEINVPWEN 167

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--- 224
               R +     Q       E +  +  F  +  +G+R  +      + +  N   I   
Sbjct: 168 KTAERRFLSMAEQTRFLQEVEHNWYKEMFYIMFLTGMRIGEVGGLKWEDIDWNKKCINIQ 227

Query: 225 -----------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                            K +   +  ++       ++L      +         +  ++ 
Sbjct: 228 RSLSCQYENGVKTMRLTKPKTHNSYRSIPFMAETEEILLSQKEKQNRQKKAYGNRWRSSG 287

Query: 268 QFSIW------------------FKAKATKAGV-----------------NKSAHGVRKF 292
           +F                      K                         +   H +R  
Sbjct: 288 EFDNLVFTTSLGSPVIRNVAEKEIKKVVKAINFQEAIEAVKENREPIEFKDLYPHAIRHT 347

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             +   + G  A  +    G +      + YT   +  
Sbjct: 348 FCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETK 385


>gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 349

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 102/350 (29%), Gaps = 42/350 (12%)

Query: 11  VTKERTRHGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           V K+ + + K  +  R         R+++  Y  +     A  + L              
Sbjct: 3   VYKDSSTN-KWYFSVRYKDVYGNNKRKMKRGYNTKREAKYAEAAFLNDINEGY------- 54

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               T  ++ + Y +      L   ++    + +      K G  +  KIT    +   +
Sbjct: 55  SDSNTFDYVFNHYLEH---SDLRPKTKKRKINEYNRHFKDKFGHINMNKITQNQCQEFRK 111

Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  + ++A    +  +V+  +A +   +  +P +S++   R     +   +E+  +
Sbjct: 112 YLMDNIPSTNTARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRIKTKPKYMLREEFDE 171

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIIT 234
                 E     L      Y+GLR  ++            + +  +     + +T     
Sbjct: 172 RVKEVEEQDYQELFKLM-FYTGLRIGEAMALVWTDYNKYKKEISIDKTMDISNRTIYPRP 230

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAG 281
                  +  L              +K          +F               K  KA 
Sbjct: 231 KTDSSEDIVPLPNFINEMLAERYQREKAANKYFDERSYFIFGGIAPKHYSHVHKKFQKAF 290

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
              + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 291 PQYNIHTLRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
 gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149]
          Length = 345

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 89/305 (29%), Gaps = 43/305 (14%)

Query: 63  SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-------------SG 107
             +K P+     +  Y  +       L+ N+  S+++ F  +I+               G
Sbjct: 2   RKQKTPSIFMKYLEYYVNTYMPEARGLSKNTINSYKTTFTLLIKYMYSVKNMKADEITFG 61

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
             D   ++   +      RK + ++  Q L ++    ++A   ++ A +   S       
Sbjct: 62  CLDVNTLS-DFMSWLEHERKCSVTTRNQRLAALYSFSEYAQNYDFDAASTFRSAVLRIPS 120

Query: 168 TEGIRPWTKEDMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            +  +                        G +  +   F+  +G R  + C   V+ +  
Sbjct: 121 KKAPKKRRVGFTTDEVKILLALPNPKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNF 180

Query: 220 NIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQF 269
                      K      + +PD    +L      +          F +   + M  +  
Sbjct: 181 RSTGTTIDIVGKGSKARRIRIPDTCASMLKKYIKHRRIETEPDRHIFSSQTHEHMTISCV 240

Query: 270 SIWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +K     A             S H +R  +     +AG     + A  G  +V   +
Sbjct: 241 EEIYKKYIKLAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQ 300

Query: 321 TYTKG 325
            YT+ 
Sbjct: 301 IYTES 305


>gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781]
 gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763]
 gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719]
 gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224]
 gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937]
 gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102]
 gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819]
 gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796]
 gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781]
 gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763]
 gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719]
 gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224]
 gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937]
 gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102]
 gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981]
 gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819]
 gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796]
 gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 349

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIFPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 364

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 7/220 (3%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           + + T  ++   +  R ++ ++  + + ++  L + A +   +   P    ++ +     
Sbjct: 81  FDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLPEFRRQKERAGRIR 140

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                +E               RL   FL+ +G R  ++       +Q +  S    K+G
Sbjct: 141 FLERDEEARLFAAIKSRSEDAYRL-SVFLVDTGCRLGEALGLIWNDIQEHRVSFWITKSG 199

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSA 286
              T+ + +   +++ + P             K++  QF   +     + G+        
Sbjct: 200 RSRTIPMTERVKEVIKLPPTEGRRPKGPFT--KLSQAQFRAIWNDAKAEVGLGADDQVVP 257

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     +    G +T+     Y   A
Sbjct: 258 HILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA 297


>gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 410

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 99/312 (31%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LDKIRSFFVGKDREYTTFLPIFDKFNEDIRQRVGHTISKDSLQKYSVLRRHFSEFLIHKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ + +++ +  +A ++ Y+  +P L+
Sbjct: 152 GRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIVNKDLAIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKA 275
                           +VE     + +              + K        + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++    I
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 297

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 81/278 (29%), Gaps = 26/278 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVE 124
           T +    +Y         + N+  ++    +             +             ++
Sbjct: 7   TSRAAFEDYI--LLERGHSKNTAETYRRGLELWRGYCEAAGLDPLDVAQEALSTFIHALK 64

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    SS    +  +R   K+ V    + +N  + V  P +  +  +  T+ ++Q+  +
Sbjct: 65  GQGRAGSSIQLIVAGLRSWVKFRVLNGDLPMNTWIPV-LPAKAKKLPKILTEGEIQRILN 123

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----------IKTQKT 229
                     + R A E L   G+R S+ C   V  L  +  +                 
Sbjct: 124 ACDGPGYYDCRDRTALETLANCGVRASELCGLKVGSLNLDDKNLIVFGKGSKERQIPFAE 183

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286
                 ++              ++  F+++ ++ ++        + +   A V       
Sbjct: 184 DLKRQFQIYLQKRLEFLDGDETEKMLFLSSRREPLSRVDLWRIVQKRGKMASVPEERLFP 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   AT     G     L    G  ++   E Y  
Sbjct: 244 HVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLH 281


>gi|227555815|ref|ZP_03985862.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|227174982|gb|EEI55954.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|315573614|gb|EFU85805.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582038|gb|EFU94229.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 392

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 111/351 (31%), Gaps = 39/351 (11%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRL-PYPHESTFIPAYMSALTGSTPK 57
            P +     + +++ + GK  Y    G    G+RIR       +     Y  A       
Sbjct: 1   MPKIS---NIYQDK-KSGKWYYVANLGFNEEGKRIRKWGRGFSTQKEAKY--AYDEYMND 54

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  +    T K  + EY    +   +   +  +  S  D+ +     +    I+  
Sbjct: 55  FSKTAIRQNSTMTYKKFLEEYFLPDYKQRVRKRTYDNRLSSMDKHLPYFYRYKLSDISAP 114

Query: 118 HIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            I+          SSA         ++    AV+   +  N    V   K++ + +  WT
Sbjct: 115 IIKKWQNQLSKNYSSAYIRNIYGLFQLSLDLAVKLGLITNNTAKIVGNVKKQKQKVDFWT 174

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             + Q+  + +       L     +Y    +GLR  ++       L     +I+ +K+  
Sbjct: 175 LNEFQKVIATFDVTDYYELYTYVSIYFLFMTGLRLGEAQALEWADLDFKNETIRIEKSMF 234

Query: 232 I-----------------ITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQF 269
                              T+ L D  +KLL      ++      + ++ +    N    
Sbjct: 235 YKNAQEFYCTEPKTRASIRTIALDDDLIKLLKEWKEKQDSNGGSKYVLSYNGLPTNKHTL 294

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               K  +  A V+    H +R   A++    G  A ++    G + ++  
Sbjct: 295 RHVIKRHSNLANVHHIKIHALRHSHASLLISLGINALDVRDRLGHEDIETT 345


>gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU121]
          Length = 406

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 103/399 (25%), Gaps = 73/399 (18%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG++ Y + +          RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGEVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKLNDKTP 64

Query: 64  PRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ +           +     S  + +      +     IT  +++ 
Sbjct: 65  TTLKSLTFHVACDEWLEHYKNHSGSKATTIKEKVSNSNTVKNAIDKEVLINNITHTYLQD 124

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
            + +    H+       +  +R +FK+A +   +     L      +K +       +  
Sbjct: 125 IINNWASIHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTRDELQAKRN 184

Query: 178 -------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                    ++ R         +F + +G+R  +      +++ 
Sbjct: 185 NYLEDSEIKELLSCFDYLIKHKKHSTRKRNYKMVKAIVQFQIANGMRIGELLAIKRENIN 244

Query: 219 NNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                                       T+ + +  T+ L    + LL    +  +    
Sbjct: 245 YEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQ 304

Query: 258 NNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            N+                ++  + +   K     + + K    H +R    +  A  G 
Sbjct: 305 WNEDFIDRGYVFTNTAGSPIDLNKVNSIIKEATEISSIKKRVTTHTLRHTHISTLAQLGI 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
               +    G        E YT   D+  +      ++ 
Sbjct: 365 NLKAIQERVGHSDYKTTLEIYTHVTDQ--MAKDMMDKLE 401


>gi|323128281|gb|ADX25578.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 374

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 115/364 (31%), Gaps = 49/364 (13%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G   R  +    +         AL        Y    +   TT K L + + +S    +
Sbjct: 14  TGKKARTTITASTKKGVKIKARDALNN-FAMNGYTVKEKPTVTTYKELTALWWESYK-NT 71

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------KHTPSSAIQ-FLT 138
           +  NSR S E      I+   GD    ++TT  I+  V             + A   FL 
Sbjct: 72  IKPNSRQSMEGIVRLHILPAFGDCKLSRLTTPVIQQQVNKWANNANKGIKGAYANYSFLN 131

Query: 139 SM-RVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF-------WS 187
           ++ R + ++ V  + +  NP   V  P+++      ++ ++ ++++QF ++         
Sbjct: 132 NINRRILQYGVTMQVIEHNPARDVIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSY 191

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------IT 234
           E     + ++ LL +G R  +        +     +IK  KT                  
Sbjct: 192 ENFFDYVLYKTLLATGCRIGEVLALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRD 251

Query: 235 VELPDGFMKLLAMTPIGKETFFIN------NDKQKMNATQ-----FSIWFKAKATKAGVN 283
           +E+    + LL      ++    +                          +     AGV 
Sbjct: 252 IEIDRATVLLLKQYKNRQQVLSWDLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVP 311

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
             S HG R   ATI   AG  A +L    G   +     TY           K      +
Sbjct: 312 DISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNISMTLNTYVHAT--KEGAKKAVSIFET 369

Query: 342 VVDS 345
            + +
Sbjct: 370 AISN 373


>gi|256845656|ref|ZP_05551114.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
 gi|256719215|gb|EEU32770.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           3_1_36A2]
          Length = 355

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 91/319 (28%), Gaps = 22/319 (6%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSA----LTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           + +    +  +          A+  A          ++        K    + L   + +
Sbjct: 29  YTEKGYYQPLIETFATKKEAEAFRIAYFNNKISEDKEKGIEVPKTHKTLLFEDLYKIWLE 88

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           +      A  S  ++ SYF    +K    D + I    ++  +     +  +     +  
Sbjct: 89  NKKP---AKTSLRNYTSYFSN-SKKLHKLDIKNINGILLQKILNELDLSKGTLRNLKSFW 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGSQP 192
           + LF +A+  ++        ++ P  +                            +  + 
Sbjct: 145 KQLFDFALLNDFCQKEYVSFLKLPNEEKGKKTSDRNRIFAADDLQKLWDNLYKDIDRFKI 204

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTP 249
                   Y+GLR S+      + +      I   K+ +      + + D    ++    
Sbjct: 205 LDIILVDCYTGLRPSELLNIKNERVFLEERYIDITKSKSKAGIRKLPISDKIYDIIKKRY 264

Query: 250 IGKETF-FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
              + F F   D  K+    +   F+       +   +AH  R   AT+ ++A      +
Sbjct: 265 DPGKEFLFTRYDGAKLTYDTYDYEFRELMKDLEIEYHTAHDCRHTFATLLSNAEIDKEII 324

Query: 308 MATYGWKTVDQA-ETYTKG 325
           +   G  +     E Y   
Sbjct: 325 IKLTGHSSYKITSEKYIHK 343


>gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 407

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 85/282 (30%), Gaps = 22/282 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVE 124
            +  I  + K     +    S  S+ + ++ + R         D  +  +T   I+    
Sbjct: 113 FRTFIENFAKRVGV-NRTEGSLRSYRNAYNHVERFMREKYNLSDIPFSALTLSFIQDYDS 171

Query: 125 SRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +     +P + I     ++++   AV    +   P    E P R  +  R  T E++Q
Sbjct: 172 HLRTDCRLSPGTIINLTVQLKIIVGEAVADGIITTYPFTGYE-PVRPKQKRRYLTSEELQ 230

Query: 181 QFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +  +         L    F F  Y+G+  SD      +HL             +     +
Sbjct: 231 RLMTMPLHRPNLYLTRDLFLFSCYTGIPYSDMRLLSKEHLSLADDG-TWWIRSSRRKTGV 289

Query: 238 PDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                 L   L +    ++T          + +  ++  K  A    ++     H  R  
Sbjct: 290 EFEIPLLDLPLHIMEKYRDTAPDGKLLPMYSNSTMNLNLKRIAKLCDIDCPLVFHAGRHT 349

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            AT      G     +    G   ++  + Y K  D      
Sbjct: 350 YATEITLGHGVPLETVSKMLGHARIETTQIYAKVTDDKINAD 391


>gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 338

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 92/306 (30%), Gaps = 40/306 (13%)

Query: 66  KKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKIT 115
                L   I  +         +L+VN++ S+      ++  +               ++
Sbjct: 2   ADTRLLSSWIRRFLLEYLIGERNLSVNTQKSYRDMLRLLLPFASEAAGKATDKLLVEDLS 61

Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              IR+      + R  + S+  Q L  +R L ++         +    ++    +    
Sbjct: 62  EGCIRNFLIRLGDERYCSASTRNQRLAGIRSLARFIAMHAPEYTDWYGRLKSIPLRKSST 121

Query: 172 RPWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +  +  +            ++G +      FL  +G R  +     +  L  NI + 
Sbjct: 122 ALISYLEKDEMDALLSAPDVDTAQGRRDHAVLLFLYNTGARADEVAHVKMGDLNMNIAAG 181

Query: 225 KTQKTGTIIT-----------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
               +  +I                   ++LL    + +ET F+N   + +         
Sbjct: 182 HYNNSSVVIHGKGNRLRRCPLWPETARLLQLLGRDRLSQETLFVNRQNRPLTRFGIRDVV 241

Query: 274 KAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 A            S H +R  +AT    AG   + + A  G  ++     Y + 
Sbjct: 242 VRNVAVAAASVPSLSQKRVSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAEV 301

Query: 326 ADRIRL 331
             ++++
Sbjct: 302 DIQMKI 307


>gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 337

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 84/308 (27%), Gaps = 38/308 (12%)

Query: 67  KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTK 117
           K  +L + +  Y  S          N+  S+   F  +        +K        I+  
Sbjct: 2   KDNSLSYYVQNYFLSYLISQRGYGNNTVASYRDTFKLLFMFLESDGKKLSKLKLTDISQT 61

Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEG 170
            +   +E     R ++ S+    LT ++  F + +         C  +        + + 
Sbjct: 62  CVLQFLEWAETERHNSVSTRNLRLTVLKSFFGYVLSTSPEFSGQCTDIINIPAKRVEKKP 121

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSI 224
               T+ + +   +     S+  +    +L      +   +  +        +       
Sbjct: 122 PLYLTESETKLLLNAPDRNSREGIRHMAILTLLYDSACRVQELINLNVADVTIGRCCKVF 181

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATK 279
              K      + +     K+L            E  F N    ++     S         
Sbjct: 182 VKGKGSKYREIPIFGETGKILERYINAYGLKPGEVLFTNRSGGRLTRAGVSYIMNKYKKI 241

Query: 280 A----------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADR 328
                       ++ S H +R   AT   +     + +    G  +V   + Y T   + 
Sbjct: 242 LQERYANRFNSNLSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPEV 301

Query: 329 IRLGIKNS 336
            R  I+ +
Sbjct: 302 TRKAIEKA 309


>gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 411

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 100/288 (34%), Gaps = 21/288 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHVARHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G     + +  G K++   + Y K         ++   +++ ++S
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMENLAARLNS 402


>gi|242373385|ref|ZP_04818959.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
 gi|242348748|gb|EES40350.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1]
          Length = 348

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 104/336 (30%), Gaps = 21/336 (6%)

Query: 11  VTKERTR-HGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K + +      Y  +      G++ +  +  ++    A    +      ++  N+ + 
Sbjct: 6   VNKRKNKTSSSWQYDVKHPSLKSGKKRKSGFKTKAEATNAAQQLIRDLEDGKKVNNNKKF 65

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSG--V 123
           K   L+WL+     +     L++  +  +E   D  +   G D   + IT    +     
Sbjct: 66  KTYYLEWLV-----ANGKDKLSIKQQYWYEHSLDLFLDHFGEDIMIKHITRNEYQKFLTN 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFK---WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +   T  +  +    +    K   +             +      K E ++  T E  +
Sbjct: 121 FANGRTSETVRKVNLFLSNCLKDAVYDGYLTKDPTYNVKAKGTKSAKKEDVKFLTIEQYE 180

Query: 181 QFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
             + ++   S       F+L  +G R S+  R     L     +I    T T+ +  + +
Sbjct: 181 GLREYFKLKSDKSSIMLFILLITGGRFSEVNRMTYDDLIYQDNAIHLPGTKTVTSDRIVE 240

Query: 240 GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295
                L              +N    ++    S  F+    K  ++   + + +R   A+
Sbjct: 241 VSKSDLLYIKSALLHHPRRRDNIIFNLSHNAISKVFRKAKGKFEIDNEVTPYSLRHTHAS 300

Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
                G     +    G   +    + YT   D  +
Sbjct: 301 YLLSKGIPIEYISKRLGHSNIGITLDVYTHLLDEHK 336


>gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
 gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC
           33656]
          Length = 411

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 88/380 (23%), Gaps = 73/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G+  Y +    G++  +   +  + +            + + ++        + +
Sbjct: 18  YRKGDGRYSYVYIDPLGKKKTI---YAKSLVKLREREEQLQKDQLDGLDVYVAGKADVNF 74

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   Y  +     L   +  ++   ++       G    R +    +        +    
Sbjct: 75  LFDRYISTK--TELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGL 132

Query: 133 AIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            I  L ++  + +            R+  V    C   +R     +  R  T +  ++F 
Sbjct: 133 QINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTVDQQRKFM 192

Query: 184 SFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTG 230
            + ++       +    FLL +G R  ++       +           +  +  +   + 
Sbjct: 193 EYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINHSLTYYQRADDSY 252

Query: 231 TI-------------ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                            + +      +L                        F N     
Sbjct: 253 KCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMP 312

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   K                           S H  R   A+   +       
Sbjct: 313 HNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKV 372

Query: 307 LMATYGWKTVDQAE-TYTKG 325
           +    G   V      Y + 
Sbjct: 373 IQEVMGHADVSTTMNIYAEA 392


>gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3]
 gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3]
          Length = 349

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHYYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|187921188|ref|YP_001890220.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719626|gb|ACD20849.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 455

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 100/319 (31%), Gaps = 30/319 (9%)

Query: 46  AYMSALTGSTPKREYI--NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
           AY +   G +P R  +   +   +  T       Y        LA ++R   +S +++ +
Sbjct: 88  AYGAIQRGHSPSRAKVEKRAEAAEALTFGKWAERYFAETA---LADSTRSMRKSVYERNL 144

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLS 160
             + G     +IT   + +  E  K   ++A        +  +F++   +     NP  +
Sbjct: 145 ASEFGRLKLEEITPVRLMARCEKIKERGAAAQAVHAREIVLQVFRFVEARGIKVDNPAAA 204

Query: 161 VER--PKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +            R  + E++  F +           RLA +F+L + +R S+   A   
Sbjct: 205 IRPSAIATFKARDRALSPEEIYIFFNALDLTPTTPTLRLATKFMLLTLVRKSEFIDATWD 264

Query: 216 HLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-- 272
            +          ++              + L +    K  F  +           S    
Sbjct: 265 EVNFETATWTIPKERMKARRPHHVYLSEQALEILVAFKTCFGSSQYLHPGRYETASPISA 324

Query: 273 ----------FKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +       + H +R+ ++T   +AG  +  +      +      
Sbjct: 325 ATLNRVIDSTVKLICARGDTFEPFTVHDLRRTASTHLHEAGFNSDWIEKCLAHEQRGVRA 384

Query: 321 TYTKG--ADRIRLGIKNSR 337
            Y K   A++ R+ ++   
Sbjct: 385 IYNKAEYAEQRRVMLQAWA 403


>gi|325479394|gb|EGC82490.1| site-specific recombinase, phage integrase family [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 365

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 103/359 (28%), Gaps = 52/359 (14%)

Query: 7   LPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +P +   + T+ GK     Y++   G+  +      ST   A          +   ++  
Sbjct: 1   MPAY---KDTKTGKWYCKFYYKDNEGKNKQKKKMGFSTKSKAL------EYEREYLLSRQ 51

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +    L   I  Y K+  + +L   S+++ +S + +I+    D    +IT   ++    
Sbjct: 52  GEPTMLLSSFIEVY-KADQYPTLRERSQLTKDSKYKKILGDFKDKPLNEITPTDLKRWQN 110

Query: 125 SRKHTPSSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178
                  S   ++T +R     L   AV    +  NP   V+R K      +        
Sbjct: 111 KLIKQGYS-DGYITGLRSEFSILLNHAVNYYGLPKNPFKLVKRAKNPNYIPQDQKFWTLE 169

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FS 223
             +      +  +   A   L ++G+R  +        L                     
Sbjct: 170 EFKQVYKNIDNVKSSTAINLLYWTGIRKGELLALTWDKLNFEKGTLLVNRSLQRVRGKNV 229

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           I   KT     + LP   +++L            ++              K    KA   
Sbjct: 230 ITQTKTYESREITLPTSTIEMLKEYKTKCYNNKNDDFIFNWEKRFIENGIKDGVNKANEE 289

Query: 284 KSA-----------------HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             A                 H +R   A+   +       +    G K      +TY+ 
Sbjct: 290 IKAYNNTHEDKKDLIKRIKVHDLRHSHASYLINHNINIVLISKRLGHKDTSTTLDTYSH 348


>gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
 gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia
           rustigianii DSM 4541]
          Length = 325

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 86/319 (26%), Gaps = 21/319 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   G+     R    +  RL                     +    N+       L  
Sbjct: 4   KKLNDGRYEVDIRPNGSKGARLRRIFARKSEALTFERYAIVNAQDYAENATLSGRLRLDA 63

Query: 74  LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           ++ ++            +  +         + I+  G+    ++  + +     +R  + 
Sbjct: 64  ILDKWWLYHGQ------TLENGEIERMQLRKTIKLLGNPTLNQLGKQTLLEHRGNRLMSG 117

Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              ++  + +  +  +F  A+    +          P  K E        + Q       
Sbjct: 118 IKATTINRDMYRLSGMFS-ALETLELLDYKNPLNGLPPLKEETPEIIFLSEEQIISLLNE 176

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                +L     L +G R  +      + +QN   +    K G    + + D   + +  
Sbjct: 177 FTGDYKLFALLCLSTGARWGEGAALHSEQVQNGRVTFLKTKNGKKRIIPISDKLSEQIKT 236

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
              G             N   F +  +    +    ++ H +R   A+     G     L
Sbjct: 237 KDSGPLFDI--------NYETFRLALRNLFPELPRGQATHVLRHTFASHFVMNGGNIVAL 288

Query: 308 MATYGWKTVDQAETYTKGA 326
               G  +++Q   Y   A
Sbjct: 289 KEILGHASINQTMVYAHLA 307


>gi|238019177|ref|ZP_04599603.1| hypothetical protein VEIDISOL_01041 [Veillonella dispar ATCC 17748]
 gi|237863876|gb|EEP65166.1| hypothetical protein VEIDISOL_01041 [Veillonella dispar ATCC 17748]
          Length = 380

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 115/366 (31%), Gaps = 46/366 (12%)

Query: 10  FVTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++ + R ++G I Y +         G  +R+ +     +  +   M  +          N
Sbjct: 2   YIDERRQKNGTISYRYGENYKDPLTGKNKRVSVTSTKNTKAVQKEMQRILNDRINEILTN 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
           S   K  T+K L  E+          V ++ + E +   ++R   GD     +   +I+ 
Sbjct: 62  SVSSKTLTIKDLTDEFVTIDKGLR-KVTTQQNIEDHAKALLRWIEGDILVVNLKAIYIQR 120

Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--------RKTEGI 171
            +     + + +   +  + ++ + K+  R  Y+     L     K              
Sbjct: 121 MLNKVLLEKSFNYVKRVYSVLKQVLKYGKRMGYINDVSYLDDVILKRPPRTTEEMTKARE 180

Query: 172 RPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
           +  TK++++ F +    +  +  L FEF   +GLR  +     V+   +    I      
Sbjct: 181 KFLTKDELKTFLTALAKKNQRVALLFEFQALTGLRIGELRALRVKDYNSKNEYIDVNATL 240

Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269
                    +   ++  V+L      +L+       +        K +            
Sbjct: 241 TVDGLRIPPKNEYSVRRVQLNKRARHILSTFIQLNHSRKQIMQHYKNDDNYIFVTDGGVP 300

Query: 270 --SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             S +          NK+   H  R    ++ A+       +MA  G          YT 
Sbjct: 301 YDSHYLNKLLKSVSFNKTVTTHTFRHTHISLLAEKQTPLKTIMARVGHNEPKTTLSIYTH 360

Query: 325 GADRIR 330
             D ++
Sbjct: 361 VTDAMK 366


>gi|327198046|ref|YP_004306413.1| gp1 [Burkholderia phage KL3]
 gi|310657180|gb|ADP02294.1| gp1 [Burkholderia phage KL3]
          Length = 342

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 102/348 (29%), Gaps = 35/348 (10%)

Query: 1   MTPSLRLP---PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55
           M    + P   P     +   G + YY+  G   GRRI  P   +        + L G+ 
Sbjct: 1   MAGRAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                  S      T   L   Y +       +  ++  ++ +  ++    G  +   +T
Sbjct: 61  AP-----SSETTRHTFAMLEQAY-RIRELPQKSAATQRMYDLFLSRLTAVIGARELDTLT 114

Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              + +   +        +A +    + ++     R   +            +K  G + 
Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLN-CGRLWGMMTIANPCAGVRGKKETGRQD 173

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              +D      +       R A +       R SD  R    ++       +TQKTG  +
Sbjct: 174 ILIDDELYAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGAFV 233

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS- 285
           TV++      L+      + +    +           +   +    F     +AG++K+ 
Sbjct: 234 TVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDKAK 293

Query: 286 --AHGVRKFSATIS-----ADAGATAHELMATYGWKTVDQAETYTKGA 326
                +R    T        +AG          G         Y +GA
Sbjct: 294 FQFRDLRARGVTHKTIDEGLEAG------QRLAGHSGPGMTARYVRGA 335


>gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302]
 gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302]
          Length = 410

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 96/312 (30%), Gaps = 25/312 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               +      +++  T+  L  ++ K        S++  +   +               
Sbjct: 92  LERIKSEYLGKKEEVETMMTLFDKHNKDIAKQVGISVSAATFQKYNVCKRHFTTFLQNKY 151

Query: 107 --GDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++T   I       +      P++A + + + + +     +   +  +P L+
Sbjct: 152 KRSDIRLSELTYIIIHDFDIFLRTVVGQNPNTATKTMKTFKTITILGRKMGVIHHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D      +++
Sbjct: 212 HRF-HLEPVNRGFLTDEEILKIANKDLGIQRLELVRDLFVFSCFTGLAYIDVANLTPENI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKA 275
                           +V      + +          +T+        +   + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGKTYRDGKLFPMLTNQRTNSYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A   G+ K  + H  R   AT+S   G +   +    G   +   + Y +  ++    I
Sbjct: 331 IADICGIKKDLTFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKK---I 387

Query: 334 KN-SRRISSVVD 344
           ++   +++  +D
Sbjct: 388 EHDMEQLAGKLD 399


>gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
 gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101]
          Length = 386

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 90/280 (32%), Gaps = 20/280 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR-------- 126
           EY K      +  N R+ +++            D  ++++T   I    E          
Sbjct: 107 EYFKKIRDKKVGKN-RLIWDTAIVHFEAFLKGNDLTFKEVTVTLIEDYKEYLLKAKNRKN 165

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  ++A+ +   ++   K A +++ +  +    ++  K +       T ++ ++  
Sbjct: 166 NSSTIARNTALSYHNKLKTTLKNAYKEQKLRTDINAGIDSIKEQESQRNFLTLKEAKKLF 225

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGF 241
           S            +F + +GLR SD  +   + +            K      ++     
Sbjct: 226 STPCPKRIVHQISKFSVLTGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPIS 285

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
            +   +     +          +              +AG+  + + H  R   AT+   
Sbjct: 286 NEAYEILAEKAQPVKTGKVFFDLKKWDVDRALPVWIARAGIVKHITFHCFRHTYATLQIA 345

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +G     +    G K++   + YTK  D  +   + S+RI
Sbjct: 346 SGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKR--EASQRI 383


>gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 337

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E     P           +
Sbjct: 65  FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 125 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 185 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGR--MFVTTRMQKTKEIVHNPISDEAYGL 242

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     +           +   T AG+ K  + H  R    ++  + G     + A
Sbjct: 243 LGERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 302

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 303 YLGHKNITTTQIYSKIAAQQ 322


>gi|317152141|ref|YP_004120189.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942392|gb|ADU61443.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 343

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 89/324 (27%), Gaps = 12/324 (3%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK  YY++   GRR+ L   + S       S        +    +       L     E+
Sbjct: 16  GKASYYYKL-DGRRLSLSTTNYSEACRLLRSIKDAYLKGKIQRITGENDKN-LGQFADEF 73

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVE-SRKHTPSSAIQF 136
            ++    +  V +  +      ++I   G       +T K +       R   PSS   +
Sbjct: 74  -EAWAIETQPVKTFKANRLAMRKVIDIEGRTKRLDMLTLKTMDELKRTHRHLKPSSINNY 132

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           +   + +   AV   Y+  NP    +   +       + +           E    R   
Sbjct: 133 VRHAKAVMNKAVEWGYLKANPFKGAKLLPQAK--RVGFIEPKEISEFIRSIEDVGLRRFV 190

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L +G R S+      + +  +              +                     
Sbjct: 191 VACLATGRRRSELVALRWEDIMWDRREY--FIAKEKRHLCKTYPMSASFLAVLKSMPRGK 248

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                +  +A  ++   K    + G  + S H +R   +    ++G     L    G   
Sbjct: 249 GRIFNRYAHADTYTHEVKRALERGGFGHLSLHDLRHSFSVAMLESGGGMKALQKLLGHSE 308

Query: 316 VDQAE-TYTKGADRI-RLGIKNSR 337
                 TY    D   +L +   R
Sbjct: 309 FRVTADTYADVTDDALQLAVNLVR 332


>gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 73/254 (28%), Gaps = 7/254 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y    H   ++  +   +  Y +   + +      K     +       + +P +A 
Sbjct: 11  IKDYCGEMHQNEMSSGTIKKYFYYLNLFRKYADGKPVSK-ELVIVWKDTLREQFSPVTAN 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++   FKW   ++       +           +    +       +      +  L
Sbjct: 70  SALAALNGFFKWFGWEDCTVRLIKVKHRMFCSGQRELSR-EEYIRLVNVARGEGNERLSL 128

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--PDGFMKLLAMTPIGK 252
             + +  +G+R S+     V  +   +  +  +     + +                I  
Sbjct: 129 LLQTVCSTGIRISELSFITVNAVDKQVAEVDCKGKIRTVFLTNGLCRLLKAYARKRNIIS 188

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMA 309
              F+    + M+ +      K  + KAGV       H +R   A +          L  
Sbjct: 189 GMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLRHLFARVYYSQEKDLVRLAD 248

Query: 310 TYGWKTVDQAETYT 323
             G  +V+    YT
Sbjct: 249 ILGHSSVNTTRIYT 262


>gi|146317758|ref|YP_001197470.1| hypothetical protein SSU05_0100 [Streptococcus suis 05ZYH33]
 gi|145688564|gb|ABP89070.1| unknown protein [Streptococcus suis 05ZYH33]
 gi|292557559|gb|ADE30560.1| Integrase, catalytic core, phage [Streptococcus suis GZ1]
          Length = 380

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 105/369 (28%), Gaps = 52/369 (14%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G         F     +RIR+      T   A    L       E          
Sbjct: 7   KKAKNGTWTVDISDGFHPVTKKRIRIIRKGFKTKKEA--LELEQYIRVVELKEKRFDFLV 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L     +     +  ++   +  + +   I     + +  K++ +HI    E  K 
Sbjct: 65  TTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINTNLNKLSYEHIFEFREYLKI 124

Query: 129 TP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            P           ++  + +  ++ +F   VR+  +  NP  ++ +       I  W  E
Sbjct: 125 KPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVE 184

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------HLQNN 220
           +  +F+   +       L F    ++G+R  +                        +   
Sbjct: 185 EFNEFRKLITSDEISYDLFFTIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGT 244

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQ 268
                T+       + +     ++LA     ++               I +    M    
Sbjct: 245 NHINSTKTRAGTRRITINHKLARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNM 304

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               FK    +         H +R   A++  + G     +    G  ++    +TY+  
Sbjct: 305 IDKKFKQILARNDYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHL 364

Query: 326 --ADRIRLG 332
             + +  L 
Sbjct: 365 YPSKQKTLA 373


>gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 315

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 32/283 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + R  G     D  +  I   H+++ ++    +   P++   +L +
Sbjct: 34  SKRSRQTMGSFLNIVARMIGFQNLRDCAWESIRRHHVQAVIQMLSDSDRAPATINTYLAA 93

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         P  +                   S+G 
Sbjct: 94  LKGVALEAWTMKQIDTDSYQHIKQVRSVRGSRLPNGRALEKHEVRALYFTCENDRSSKGL 153

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +       L+  GLR S+     ++ +     +++   K        +PDG  + L    
Sbjct: 154 RDAAILAVLVGCGLRRSEVVALDMECVITRDQALRVLGKGNKERIAYVPDGAWQRLMRWV 213

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                        +   F +   ++M         + +  +AG+ K + H +R+  A+  
Sbjct: 214 EEVRGEQPGSLFQRIRRFDDVTAERMTDQAIYHILETRRIEAGLEKFAPHDLRRTFASAM 273

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            D G     +    G  +V   + Y +  D      + SRR+ 
Sbjct: 274 LDNGEDIITVKDAMGHASVTTTQKYDRRGDER--LKQASRRLE 314


>gi|94995293|ref|YP_603391.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
 gi|94548801|gb|ABF38847.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10750]
          Length = 387

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 118/370 (31%), Gaps = 48/370 (12%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++      +       +               
Sbjct: 9   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITGRTRKEVNQKAKHAQLDFLSNGSTIK 68

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           RK    T K L   + ++     +   +  +  +     I+   G+    KIT   I+  
Sbjct: 69  RKVVIKTFKELSHLWLETYKLT-VKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQML 127

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDM 179
           +        +     + +R + +  V    +  N    +  P+++    + ++     D+
Sbjct: 128 INRLSKYYVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDL 187

Query: 180 QQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           + F          R       + ++ LL +GLR  ++C      +     +I   KT   
Sbjct: 188 KSFLEHLETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSI 271
                           + +    ++ L +  + +   F                   F+ 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 272 WFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    +TY  
Sbjct: 308 SVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGH 367

Query: 325 GA-DRIRLGI 333
            + D+ +  +
Sbjct: 368 LSKDKEKEAV 377


>gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
 gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756]
          Length = 317

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 83/313 (26%), Gaps = 37/313 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVE 124
           +  +I+++  +    +    S  ++ +          +     I +      +H      
Sbjct: 3   VAEIIADF-DTVLTQAYRPASASAYRADLHLWQEFLAEQGIDHIESVQAEHLRHFIRRER 61

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
           +R     S  +   ++R L++   RQ     +P   +  PK +       T +  QQ   
Sbjct: 62  ARGVAIRSLRRRFAALRALYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLD 121

Query: 184 ---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                                ++ R   E L  S LR S+     + HL      ++   
Sbjct: 122 GPTSSDGGPAQPATAQTHFAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFG 181

Query: 229 TG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAK-AT 278
            G     V +    +  L      +        K         +++              
Sbjct: 182 KGGKERMVPVGQVALTALRTYLPARAAVAAAEVKALFLNQRGGRLSVRSVQRIVDGWGRD 241

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI---KN 335
           + G     H +R  +A+    +      +    G   +     YT   D   L       
Sbjct: 242 RLGQALHPHTLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTH-LDHQHLAAVYDSA 300

Query: 336 SRRISSVVDSDDP 348
             R        +P
Sbjct: 301 HPRAHRAPPRQNP 313


>gi|254449673|ref|ZP_05063110.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
 gi|198264079|gb|EDY88349.1| phage integrase family protein, putative [Octadecabacter
           antarcticus 238]
          Length = 283

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 93/291 (31%), Gaps = 15/291 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           R    + +    TL+  +  Y         +  +++   +     ++        +I+  
Sbjct: 5   RGAGKAAQIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKA 62

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +PS+A   L S R ++  A R   +   P +++E  + K +G R     
Sbjct: 63  MTVRRHHDMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDG-RIIENL 121

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                          R+ +E LL++GLR ++        +  +   +   K G    + +
Sbjct: 122 KHWWKTIDDLPNPIHRVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPI 181

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                ++LA        +         +    +           +  + H   +  AT++
Sbjct: 182 SQLHHEILAPLRPLSSDWVF------PSPKSETGHITRPVR---LKYNPHMHCRTFATVA 232

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK-NSRRISSVVDS 345
            +AG     +        +    + Y +   D +R  ++     +   +DS
Sbjct: 233 MEAGVLEEIVGRLLNHTPLSITGQRYVRPSLDALRPSMEIACDELLKRIDS 283


>gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96]
 gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
 gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
 gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 356

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 100/311 (32%), Gaps = 38/311 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +T   P     +   ++  TL+ L   +         +  +   +    ++++      +
Sbjct: 1   MTRPNPPTATESHISRQGQTLRRLAESWLAHLAAAGRSPRTVQGYR---ERVLAFLAWCE 57

Query: 111 YRKITTKH-----IRSGVESRKHTPSSA----------IQFLTSMRVLFKWAVRQEYVAI 155
            R I         +    +        A             L+++R+L +W +++ ++  
Sbjct: 58  PRGIRYAPQVSLAVLESYQRYLRGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILY 117

Query: 156 NPCLSVERPKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           NP   +  PK +            T+  +Q   +    G + R   E L  +G+R ++  
Sbjct: 118 NPAELLALPKEERRLPAQVFSEAETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELA 177

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------MTPIGKETFFIN 258
              +  +      +  ++        +P G   L+                      FI+
Sbjct: 178 NLLLSDVDAVRGVVNVRRGKGGRDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGHLFIS 237

Query: 259 NDKQKMNATQFSIWFKAKATK-AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315
           +    +  +  +        + A + K+   H  R   AT   + GA    + A  G + 
Sbjct: 238 HKGTGLGRSTLTAMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEK 297

Query: 316 VDQAETYTKGA 326
           ++  + YT+ A
Sbjct: 298 LETTQIYTRVA 308


>gi|220934931|ref|YP_002513830.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996241|gb|ACL72843.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 361

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 93/341 (27%), Gaps = 35/341 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   GK     R+    R        +    A  +  T    ++  +     +  T++ L
Sbjct: 6   KLPSGKWRAQIRRRGQYR---ADTFLTREAAARWARATEVALEKGELEPVPAQGPTVEEL 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
              Y +         + +   E     ++ + G+     +T   IR  +        P +
Sbjct: 63  ARRYIEEY-ARQHKRSWKRDHEHLERDVLPRLGEMLAGSVTRGDIREMLSGVAARGAPVA 121

Query: 133 AIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           A + L   + ++ WA+  E   +  NPCL ++ P       R  T  +++   +      
Sbjct: 122 ANRVLAVCKKMWNWALDHEVSGIETNPCLRIKPPAPTRSKERVLTMSEIRTLLAALDRDE 181

Query: 191 QP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE 236
            P           R+A + +L +G R  +     +  L                      
Sbjct: 182 MPAGCRAWPTRATRVAIQLILLTGQRPGEVAGMALTELDRQDGWWTIPGERAKNGRAHRV 241

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKAKATKAGVN- 283
                 K L    +       +                       S          G+  
Sbjct: 242 PICAGAKRLIDEALALRLDPKSAYVFPSPRRSGGRRDRAIAAEAISRAVTRLREHVGIPH 301

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AH +R+  A+  A  G +   +              Y +
Sbjct: 302 WTAHDLRRTCASHLAGLGVSREVIARLLNHTDRSVTSIYER 342


>gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428]
 gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428]
          Length = 353

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 78/303 (25%), Gaps = 52/303 (17%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-I 134
              R++      ++ +  ++  +  + I        +++    I   +         A  
Sbjct: 42  ERLREACRLRHYSLRTEEAYWMWVRRFILFHAKRHPKEMGAPEITEFLTDLAVRHDVAPS 101

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++  L     +           + R +R  +       ++M++            L
Sbjct: 102 TQMQALNGLVFLYKQVLGRDPGEFAGLVRAQRTRKVPVVLAVKEMRRLLM--ELEGTALL 159

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----------------------------------- 219
             + L  +GLR  +  R  V+ +                                     
Sbjct: 160 MAQLLYGAGLRMIECVRLRVKDVDFARGVLTLQETKGGQGRVTMLPETAREGLKRQLAKA 219

Query: 220 ------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                       N   +       +        +  +       ++       +  ++  
Sbjct: 220 RALHEADRAAGANGVILPHALGEKLRHAATAWHWFWVFPSPVESRDPRSDVVRRHHVHED 279

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 KA A++AG+    + H +R   AT   + G     +    G K V     YT  
Sbjct: 280 SLQRALKAAASRAGIAKPVTPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHV 339

Query: 326 ADR 328
            +R
Sbjct: 340 LNR 342


>gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
 gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC
           43184]
          Length = 310

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 20/282 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHI- 119
           + P TL  L ++  K+    S +  +  +        D  +R  G  D     +T     
Sbjct: 22  RTPMTLLALSAKELKAQQ-ESKSEGTYSNNRISDKQLDAFVRSRGEEDILLTALTMDFFD 80

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             R  ++   + P++  + L  +  L   AV Q  +  NP    +    +    R  +K 
Sbjct: 81  DYRFHLKKEGYAPATINKHLCWLSRLMYRAVSQGTIRFNPFEEAKYEAVER-KPRFLSKG 139

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           D+ +  +F  +       R  F F +++GL  +D     V  ++ N    +  +     T
Sbjct: 140 DVAKLLAFPLQDEGAELSRRMFLFSVFTGLAFADLQSLRVSQIEKNNEGKRYIRKARQKT 199

Query: 235 -----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
                + L     ++L++    +           M+  +     KA     G+    + H
Sbjct: 200 EVESLIPLHPIAEQILSLYTKEESKGDYKIFPDTMSKGKLLTHLKAVGWACGIRTPLTWH 259

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             R    T++ +AG     +    G  ++   + Y +  D+ 
Sbjct: 260 VGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQK 301


>gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4]
 gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4]
          Length = 290

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 83/292 (28%), Gaps = 27/292 (9%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
                  K+     LA  S+  +      ++    D     I+ + ++     R    K 
Sbjct: 4   DWYERSMKALQLAGLAEGSQQCYTRAVRMLVLFY-DKTPDLISEEELQEYFLHRRNVDKW 62

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWS 187
           +  +      ++R  F+  +R+++       +        +     ++E++ +      +
Sbjct: 63  SSGTLRICYCAIRFFFEKVLRRDWHIFGYLKAERS----KKLPAVLSQEEIARILSCVRT 118

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             ++  L   +     L+       G       +  +   K      V LP   + +L  
Sbjct: 119 PHNRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLIHVHRGKGAKDRMVPLPPPTLAVLRE 178

Query: 248 TPIGKETFFINND------------KQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292
                +                   +  +  T      K    +AG+ K     H +R  
Sbjct: 179 HWKSHKNPRPIFPALGCGDKQGATAESPLAITTVVGAMKDAVRQAGITKRSVHIHTLRH- 237

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSRRISSVV 343
            AT   + G     +    G  +++    Y     +     ++   R+   +
Sbjct: 238 YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRKGHDDAVQIINRLMGEI 289


>gi|314935704|ref|ZP_07843056.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313656269|gb|EFS20009.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 405

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 109/401 (27%), Gaps = 73/401 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K+     
Sbjct: 5   KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEEKQNNKIP 64

Query: 64  PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++         ++  +       I  +   D    K+  + I+ 
Sbjct: 65  TTLKTLTFHAACDEWFENYKLTSGAKQSTIRAKTYRLAHIKERINEDILVDKMNAQVIQD 124

Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +            +    ++ ++ + K+A ++  ++    +      +K         +
Sbjct: 125 YINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIDNVSLPKKAVTREEIKAK 184

Query: 178 DMQQFKSFW---------------SEGSQPRLAFEFLLYS------GLRCSDSCRAGVQH 216
                +                  ++G   R        +      GLR  +      ++
Sbjct: 185 RENYLEMNEVHKLIDELNHKSSTSNKGYIKRSYMMTAYITEFQVLNGLRIGELLALQPEN 244

Query: 217 LQNNI-------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +                       F   T+   +  T+ +     ++L    +  +    
Sbjct: 245 IDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCEILRKVMLENKKSAK 304

Query: 258 NNDKQ-------------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
            +                 M  +  +   K  A   G+ K  S H +R    ++ +  G 
Sbjct: 305 WDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHTMRHSHISLLSQLGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
           +   +M   G K      + Y+   ++  +      ++ ++
Sbjct: 365 SLRAIMDRVGHKDYKTTLQIYSHVTEQ--MDKDMMIKLENI 403


>gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
 gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646]
          Length = 323

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 89/290 (30%), Gaps = 44/290 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTP 130
           I  +    +  +L+  +  S+E       +      G  +  K+ T HIR  ++      
Sbjct: 8   IENFLLYCNAKNLSKRTIGSYEQSLRLFAQFLKEKYGIEEVSKVNTGHIRQYLDYLGKRG 67

Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                       ++   +L +++V F W   +  +  NP   +E
Sbjct: 68  KYTVIIDETKKEINNPENRQDFGQPLSTTTKANYLRNLKVFFNWLYGEGEIPKNPVAKIE 127

Query: 163 RPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           + K + +  +P +++D       F      G +  + F+FLL +G R  ++       + 
Sbjct: 128 QIKPQRKVKKPLSEQDLKRIANCFVKSTFTGYRNYVIFKFLLDTGARIQETLSLTHNDID 187

Query: 219 NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFS 270
                +  +  K      V L    ++ +      KE +      F       +    + 
Sbjct: 188 LKFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDLIFPTKRGTPLTVHSYE 247

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +      G++ S H +R   A      G     L    G   V    
Sbjct: 248 KQLRDAGKLVGIDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVTM 297


>gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591]
 gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591]
          Length = 379

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 89/322 (27%), Gaps = 17/322 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPTTLKWLISEYRKSAH 83
           + K      RL          A  +         ++ ++       +      E      
Sbjct: 49  YDKPRTPAQRLHNKETQRAAEAIRAKRLFEYETGKHHLDFSNAYKASFFEYFQEVTDQKA 108

Query: 84  WGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSS--------- 132
            GS + +S   + S    + +     +  + ++    +        H   +         
Sbjct: 109 AGSKSNHSI--WISALKHLRQYHKLPELTFEEVDQLFLEGFRHYLMHKARTKSGTPLSRN 166

Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
               +   +R     A ++  +  NP   V+  + +       T+++++         + 
Sbjct: 167 TQSAYFNKLRAALNQAEQERLLPDNPVRRVKAIQGEKNKRVYLTEDEVRALAQAECRYNV 226

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +     L+      +   T    +         +       
Sbjct: 227 LKRAFLFSCCTGLRWSDIHKLTWAELEPFYDHYRIVFTQKKTSGLQYLDLNDMAMQLMGR 286

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309
                    K    +   ++     A +AG+    + H  R   A I  + G   + L  
Sbjct: 287 PGKATERIFKGLKYSAWHNMELTRWALQAGITKKVTFHSARHTFAVIQLNRGVDIYALSR 346

Query: 310 TYGWKTVDQAETYTKGADRIRL 331
             G   +   E Y    +  R 
Sbjct: 347 LLGHSELRTTEIYADILESRRR 368


>gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58]
 gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58]
          Length = 334

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 37/301 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           L+    E+       S ++++  S+   +  ++R   +             ++   +R+ 
Sbjct: 11  LRAFFQEWLA--EQRSASIHTIRSYRDTWRLLLRFVAERKGCGVARLTLTDVSAGEVRAF 68

Query: 123 VES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWT 175
           +      RK T  +    L ++R  F +   +    I  C  V     K E         
Sbjct: 69  LHHTEHGRKTTIGTRNCRLAAIRSFFSFVADKNPEYIAQCSEVLAVPLKREPTSAPCYLE 128

Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            E+++   +  +    EG +  +   FL  SG R  ++     + ++ +  +      K 
Sbjct: 129 PEEVEAILAQPNRSTLEGLRDHVLLSFLYNSGARIQEALDLCPEAIRFDAPNFVRLYGKG 188

Query: 230 GTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---- 280
                  L    + LL            E  F+N   + + A+       A   +A    
Sbjct: 189 RKERICPLWPETVALLRKLLERQPRAPDERIFVNRYGEPLGASGVRFKLNAYVEQAAKST 248

Query: 281 ----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                 + + H  R  +A     AG     + +  G  ++D    Y +   +  R  ++ 
Sbjct: 249 LTLQSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308

Query: 336 S 336
            
Sbjct: 309 V 309


>gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 345

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 96/308 (31%), Gaps = 42/308 (13%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
            TL   +  Y         +  +  S++       R   D        F +     K I+
Sbjct: 15  MTL-EFLETYL--PRQLGRSSKTIKSYKDSLTVFRRYLYDECHISVAAFKFADCNQKCIQ 71

Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGI 171
             +   K   ++P +  Q LT+++    +A  ++    +  LS       + PK++ E +
Sbjct: 72  EFIIYLKDNNNSPGTCNQRLTALKSYLWFAADRDIAVQSVALSISKIPQCKIPKKEKETL 131

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQK 228
                  + Q       G + R+    L  S +R  +     ++ L    +N +   + K
Sbjct: 132 TEEALAAILQQPPNTKMGLRDRVIMILLYDSAVRLDELLCLTLKDLSLRTDNPYIRISGK 191

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKA 277
                 V +     + L           +N D+            +M+      + K  A
Sbjct: 192 GNKERIVAITPKTAEHLKQYLSVYHKNDLNMDQYLFITRIKGVTDRMSPGNVERFIKQYA 251

Query: 278 TKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
             A        +    H  R+  AT     G     +    G  + +  + Y K   + +
Sbjct: 252 NSAREKCLQIPLKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEML 311

Query: 330 RLGIKNSR 337
           R  I++  
Sbjct: 312 RKAIESVE 319


>gi|253751017|ref|YP_003024158.1| putative integrase [Streptococcus suis SC84]
 gi|253752917|ref|YP_003026057.1| integrase [Streptococcus suis P1/7]
 gi|253754742|ref|YP_003027882.1| integrase [Streptococcus suis BM407]
 gi|330831952|ref|YP_004400777.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
 gi|251815306|emb|CAZ50874.1| putative integrase [Streptococcus suis SC84]
 gi|251817206|emb|CAZ54929.1| putative integrase [Streptococcus suis BM407]
 gi|251819162|emb|CAR44300.1| putative integrase [Streptococcus suis P1/7]
 gi|319757268|gb|ADV69210.1| hypothetical protein SSUJS14_0101 [Streptococcus suis JS14]
 gi|329306175|gb|AEB80591.1| hypothetical protein SSUST3_0111 [Streptococcus suis ST3]
          Length = 377

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 105/369 (28%), Gaps = 52/369 (14%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G         F     +RIR+      T   A    L       E          
Sbjct: 4   KKAKNGTWTVDISDGFHPVTKKRIRIIRKGFKTKKEA--LELEQYIRVVELKEKRFDFLV 61

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L     +     +  ++   +  + +   I     + +  K++ +HI    E  K 
Sbjct: 62  TTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINTNLNKLSYEHIFEFREYLKI 121

Query: 129 TP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            P           ++  + +  ++ +F   VR+  +  NP  ++ +       I  W  E
Sbjct: 122 KPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVE 181

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------HLQNN 220
           +  +F+   +       L F    ++G+R  +                        +   
Sbjct: 182 EFNEFRKLITSDEISYDLFFTIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGT 241

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQ 268
                T+       + +     ++LA     ++               I +    M    
Sbjct: 242 NHINSTKTRAGTRRITINHKLARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNM 301

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               FK    +         H +R   A++  + G     +    G  ++    +TY+  
Sbjct: 302 IDKKFKQILARNDYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHL 361

Query: 326 --ADRIRLG 332
             + +  L 
Sbjct: 362 YPSKQKTLA 370


>gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 93/329 (28%), Gaps = 66/329 (20%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH------- 128
           Y K       + N+ ++                + + +IT   I   +E  ++       
Sbjct: 40  YLKYQKSKGRSDNTLLAQARDLKLYWEFLETNRYTFDQITPYIIGHFIEFLRNDEHGKNI 99

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKED 178
                       +  + LT++  L+ + V    +        ++RP    + +   T+ +
Sbjct: 100 IHIKVSSVRAGKTINRILTTIHNLYIYIVNTMEIRNPILMEEIKRPPNMFKDLLHHTRSN 159

Query: 179 MQQFKSFWSE-----------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +  +S +                           + RL F+ +  SG R  +     ++
Sbjct: 160 NKTHRSIFKVKEVNRAVRLITNDEADTFVENLVRWRDRLIFKIMYISGARIQEVLDLKIE 219

Query: 216 HLQNNIFS------------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            +     +                           I   + +   ++  +      ++  
Sbjct: 220 QIPTPDPTSMVAVLENIKSKGKNRDLYMPMYLLEEIDNFIMEERNQVDTVNSFIFVSYQT 279

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
               +K+        F     K G+  + H +R    T   ++G     +    G K V 
Sbjct: 280 QYLGKKLTYRGIYEVFNRVKKKTGIYFNFHDLRHTCVTNFVESGLDISVVQKIAGHKHVT 339

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDSD 346
             E YT       L  K+  ++ S   +D
Sbjct: 340 TTENYTH------LSKKHINKVISKYWND 362


>gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629]
          Length = 432

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/429 (9%), Positives = 93/429 (21%), Gaps = 99/429 (23%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  +                           + +  TL 
Sbjct: 7   RKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-- 128
            L+  +  +    G+L+  +  ++     +I +        + +T+ H++  ++      
Sbjct: 67  ELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGG 126

Query: 129 -------TPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     S     +    ++  F++AV  +       +     + K E    +  E 
Sbjct: 127 TVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETDLFADET 186

Query: 179 MQQFKSFWSEGSQPR---------------LAFEFLLYSGLRCSDSCRAGVQHLQ----- 218
                       +                 L  +   ++GLR  +      Q +      
Sbjct: 187 ATDRDKVKPLSFEMYRKLIEQLGKRSGDTILPVQIAYFTGLRLGEVAGLTWQDINLEEQY 246

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    I V      +  +      ++        +     
Sbjct: 247 LTVRRSIRYNGATHKHEIGPTKWKKIRVVDFGDTLADILRNAKKEQHKNRFQYGELYQRN 306

Query: 268 QFSIWFKA------------------------------------------KATKAGVN-- 283
            +    +                                               AG    
Sbjct: 307 FYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVP 366

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
                  H +R    T     GA   ++    G   V      Y       R   + S R
Sbjct: 367 ELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHAT---REAKRTSAR 423

Query: 339 ISSVVDSDD 347
           +   V  +D
Sbjct: 424 LLDKVAGND 432


>gi|226306816|ref|YP_002766776.1| integrase [Rhodococcus erythropolis PR4]
 gi|226185933|dbj|BAH34037.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 375

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 104/345 (30%), Gaps = 30/345 (8%)

Query: 11  VTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           V++  T+ G      +R    +  R           AY + +        ++        
Sbjct: 4   VSEYATKAGTRYEVRYRTPDHQTTRKRGFKTKRDANAYAARVEVDKQTGAFVQQS-AGRA 62

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L  E+        L  +S    +S + + +  K G     +I   H++  V     
Sbjct: 63  TIGELGVEWLG--RQAHLKPSSARVVKSAWDNHVQPKWGQTPVGRIKRTHVQQWVADMSV 120

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +  +    +  +   AV    + +NP   V+ P+RK       T   +Q      
Sbjct: 121 DSGPVTITRCFGVLASILDDAVADRLLVVNPARGVKLPRRKRGEQTYLTMAQLQALAEQV 180

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------QKTGTIIT 234
            E     L   F        +      +  L+  +  ++              K+    T
Sbjct: 181 GERRGLVLLLGFGGLRFGEAAGLRVRHLDLLRRRVRVVENAVTVAGRVELGSPKSHAQRT 240

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFKAKATK--AGVNKSA--- 286
           + +P    + LA    GK    I     +           W+     +  AG        
Sbjct: 241 IAVPRLVTEALARQCEGKGRDDIVFPNVRGGHMTLPSGKSWWSGAVERCQAGDPSFPQIG 300

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-ADR 328
            H +R  +A++   AGA    + A  G  +     + Y    AD+
Sbjct: 301 VHALRHTAASLMIAAGANPKAIQAQLGHASATLTMDRYGHLFADQ 345


>gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1]
 gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1]
          Length = 411

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 88/380 (23%), Gaps = 73/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G+  Y +    G++  +   +  + +            + + ++        + +
Sbjct: 18  YRKGDGRYSYVYIDPLGKKRTI---YAKSLVKLREREEQLQKDQLDGLDIYVAGKADVNF 74

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   Y  +     L   +  ++   ++       G    R +    +        +    
Sbjct: 75  LFDRYISTK--TELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGL 132

Query: 133 AIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            I  L ++  + +            R+  V    C   +R     +  R  T +  ++F 
Sbjct: 133 QINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGVRKTRRALTVDQQRKFM 192

Query: 184 SFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTG 230
            + ++       +    FLL +G R  ++       +           +  +  +   + 
Sbjct: 193 EYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGVRWDDIDLENRIIDINHSLTYYQRADDSY 252

Query: 231 TI-------------ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                            + +      +L                        F N     
Sbjct: 253 KCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMP 312

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   K                           S H  R   A+   +       
Sbjct: 313 HNPAAVNRAIKRIVDTHNSEEEVTAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKV 372

Query: 307 LMATYGWKTVDQAE-TYTKG 325
           +    G   V      Y + 
Sbjct: 373 IQEVMGHADVSTTMNIYAEA 392


>gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
 gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32]
          Length = 324

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 56/309 (18%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I EY         A+ +  ++  +  Q I        R +T++H+   +       
Sbjct: 6   FLAYIQEYML---GRHYALRTTQAYIYWIHQYILYHNKKHPRNLTSRHVEDFLTHLVVDR 62

Query: 131 SSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SA +  + ++  +           I   +   R  +  +     T E++ +F +  S  
Sbjct: 63  KSAQKTQSLALNAIVFLYKEIIQEPIELDMQFRRSDKSRKLPTVMTPEEISRFFNHCSPN 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            +  L ++ +  SGLR  +  R  +Q +  +  S++  +        V +       + +
Sbjct: 123 FK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPSIKL 180

Query: 248 TPIGKETFFINNDK---------------------------------------------- 261
                  ++  +                                                
Sbjct: 181 QQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRR 240

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K  + KA + K  S H +R   AT    +GA    +    G   +   
Sbjct: 241 HHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTT 300

Query: 320 ETYTKGADR 328
           + YT   DR
Sbjct: 301 QIYTHIIDR 309


>gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 74/271 (27%), Gaps = 25/271 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           L            L+  ++ S+     +                +    +   +     +
Sbjct: 11  LRQRMIDDMRMRKLSPKTQASYIRVVKRFAGFLRRSPDTASVEDLRRYQL--HLVDHGIS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P S    LT ++ LF+  + +  +          P      +      +         + 
Sbjct: 69  PISLNATLTGLKFLFETTLDRPELLTKM-----HPVHVPHKLPVVLSREEVARLIAAVDN 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAM 247
            + + A      +GLR S+     V  + +   +++ ++          L    ++ L  
Sbjct: 124 LKHQTALSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVLLERLRA 183

Query: 248 TPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295
                                +    ++  Q +    A A  A ++K    H +R   AT
Sbjct: 184 WWKFAHAQGKMLQGGWLFPGLDPIDPLSTRQLNRAIHAAAEAARIDKRVSMHTLRHSFAT 243

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +       +    G K ++    Y + A
Sbjct: 244 HLLEQKVDIRVIQVLLGHKKLETTALYAQVA 274


>gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
 gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium PC4.1]
          Length = 407

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 101/395 (25%), Gaps = 69/395 (17%)

Query: 16  TRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +  Y     +G        ++I             +   + G     E       K
Sbjct: 10  KKSKEYRYEVYISNGIDPGTKLQKKIHKKGFKSHEEAERFAKIVEGEIA-SEEYTQKNPK 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T++  + ++  +    ++   +RI   +     I    G +   K T    +  +   
Sbjct: 69  NLTIEKFMDDWINNYKM-NVKEGTRIVHRANIKMYINPYIGKYKLDKYTRADHQRFINQL 127

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + ++A     ++   FK A++  Y+  NP   VE P+  ++  +   
Sbjct: 128 LTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLGYIKNNPTSFVEFPRNPSDKKKVKY 187

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
               Q          +    +          GLR S++       +  +  ++   +   
Sbjct: 188 YTFDQSELFLEFAKKEKSFIWYPFFLIIFDQGLRKSEALGLQWADIDFSQNTLNINRERL 247

Query: 231 ---------------------TIITVELPDGFMKLL------------------AMTPIG 251
                                   ++ +     K L                        
Sbjct: 248 GAAEKGPNKGLIITDDTKTPSGTRSLPMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFI 307

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
               +  N    +     +        +A +   + H  R   A  +  AG    ++   
Sbjct: 308 FINTYGKNKGIPIRDRTVNGASHRIEKRASLPHITVHDGRHTFAARTRQAGIPLEDIKDF 367

Query: 311 YGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVV 343
            G K V   + Y   +   + R   +    I   +
Sbjct: 368 LGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQI 402


>gi|330955110|gb|EGH55370.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas syringae Cit 7]
          Length = 312

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 107/313 (34%), Gaps = 27/313 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  YI     +  TL   +  Y            ++ +  +   Q+I   G +    ++ 
Sbjct: 3   RGVYIQRGGSERMTLAMALKRYLAEISPTK-KPTTQRAEATKAQQLISHLGKYSMAALSA 61

Query: 117 KHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPK 165
           + I +  ++R           + ++    L  +  L+  A+++  +  + NP L++ +P 
Sbjct: 62  EIIANYRDTRLASITSRGKPTSNNTVRLELAFLSHLYTGALQEWGLGLSFNPVLNIRKPS 121

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ----- 218
                 R  + E+ ++  +  +  S P L +     L +G+R S+        +      
Sbjct: 122 HGEGRDRRLSAEEERRLLAAVNAHSNPMLGWIVRIALETGMRSSEITSLRRHQVDLKKRV 181

Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                    S +T     + T          +         F     + K +A  F+  +
Sbjct: 182 VRLSDTKNDSARTVPLTRLATDTFQLAMSNPIRPIDCDLVFFGEPGKEGKRSAYAFTKTW 241

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               TK G+     H +R  + +   + G +  E+ A  G K++   + YT    R    
Sbjct: 242 GKLRTKLGMPDLRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL--RAEDL 299

Query: 333 IKNSRRISSVVDS 345
           +    ++ +   +
Sbjct: 300 VSRLDKLEARAPN 312


>gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56']
 gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56']
          Length = 316

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 82/305 (26%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           LI   R +      +  +  ++  +  Q IR       R++  + + + +        +A
Sbjct: 3   LIEAVRATIRRLHYSPRTEEAYVHWIRQFIRFHHGKHPRQMGAEEVTAFLNDLAVARRTA 62

Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L     R   + I    ++ER +R        +++D              
Sbjct: 63  ASTQNQALCALLFLYRRVLDLQIPRLEALERARRPEHLPTVLSRQDALTLLEHLI--PPF 120

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------------- 236
           RL  E L  SGLR  ++    V+ +  +   I  ++                        
Sbjct: 121 RLIGELLYGSGLRLLEALSIRVKDVDLDRRQIMVRRGKGQHDRPALLPARARDELQAQLD 180

Query: 237 -------------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  +   +    +          ++
Sbjct: 181 AVAQRHKKELAVGRGEVDLPHALRAKMPGAATSLAWQYIFPASRPCTDPATGRQVLYHLH 240

Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +            AG+ K A  H +R   AT   +AG     +    G K V     YT
Sbjct: 241 ESAVQRAVHDAGRAAGLTKRATCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYT 300

Query: 324 KGADR 328
              DR
Sbjct: 301 HIVDR 305


>gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
 gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein
           [Pseudomonas sp. TJI-51]
          Length = 402

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/377 (11%), Positives = 93/377 (24%), Gaps = 58/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------YIN 62
           P ++      G   Y    G  +   L      T   A   A                  
Sbjct: 28  PGLSIRVLPSGHASYMVTWGRNQAATLGRVGMMTLDQARTEAARWLAEAHAHGAPLVAAK 87

Query: 63  SPRKKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           S R+   TL+  + E    + ++ H       +R + E  F  ++R        +IT + 
Sbjct: 88  SKRRAAHTLQSYLEESYYPWLETHHKAHQK--TRHAIEYSFGALMR----KPLAEITQRD 141

Query: 119 IRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           + +            ++A + L ++R     AV    +  +P   ++  +  T     + 
Sbjct: 142 LEAMRVKWLAAGLRDATANRKLAALRGALSKAVEWGALEQHPMTKLKPMRLDTRARVRFL 201

Query: 176 KEDMQQFKSFWSEGSQPRL---------------------------------AFEFLLYS 202
             +  +      +  + R+                                      L +
Sbjct: 202 SSEENRRLRQALDDREERIRDERDSANRWRRERKKAELPDLRKVAFADHLKPMAIISLNT 261

Query: 203 GLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           GLR  +        +     +     +              + L +    K         
Sbjct: 262 GLRRGELFNLTWADIDLGQKTLTVVGEGAKSDQTRHIPLNKEALQVIKGWKAQSNGLPLL 321

Query: 262 QKMNATQFSIWFKA----KATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                       K        ++ ++    H +R   A+  A  G   + +    G   +
Sbjct: 322 FPSQTGGVMDNVKKSWDGVLKESKISSFRWHDLRHTFASNLAMKGVPLNTIRDLLGHADL 381

Query: 317 DQAETYTKGADRIRLGI 333
                Y   A   +   
Sbjct: 382 KMTLRYAHLAPDSKAAA 398


>gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55]
          Length = 269

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 88/267 (32%), Gaps = 19/267 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            L+  + KS     L+ N++ +++    Q +   G    + I    ++   +     ++ 
Sbjct: 6   ELLE-FEKSIQ--QLSKNTKYNYKLDIKQFLNIYGH---QDINKALLKKYKDEIIENYSI 59

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + + S+    ++     +V +    +                 +     +      
Sbjct: 60  KTVNRKINSLNAYLRFKNINMHVPVAKIQNQTFIDDMLTNEEVRLMLNKSIELN----DL 115

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAM 247
           + +     L Y+G R S+  +  V+ +Q +   IK + +      I   L + F + +  
Sbjct: 116 RAKAIMLGLFYTGARVSELLQFKVKSIQKDEIMIKGKGSKYRKILIPSVLNNAFQEYVDN 175

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
             +    F  +  +  ++ ++     K  A  A +N+     H  R          G + 
Sbjct: 176 ERVDNTQFLFSGQRGVLSRSEVFRILKKYALLANINEDSVYPHAFRHLFTKNLDKKGVSY 235

Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331
             +    G   +   + Y + + R  L
Sbjct: 236 SAIKQLLGHA-LSTTDIYMQLSKRELL 261


>gi|160900140|ref|YP_001565722.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160365724|gb|ABX37337.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 342

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 105/357 (29%), Gaps = 35/357 (9%)

Query: 1   MTPSLR-LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M+     LP  V ++    G   ++ R    +RI          +PA   AL       +
Sbjct: 1   MSKRRSDLPKRVYEK----GGAYWHVRAEGKKRIWARLSTIRDGLPALYRALAAMEQADQ 56

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             +       ++  LI+++         +V ++ +       I     +F  +++T   I
Sbjct: 57  TRD-------SMAALIADWLAEVGSRH-SVKTQANDAYQTRTISESFQEFRAQEVTAPAI 108

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI----------NPCLSVERPKRKTE 169
              ++     P +   + + +R L ++A  + Y                 +  R    +E
Sbjct: 109 VEFLKHFSDKPRTYNAYRSMLRELMRFAEEKGYRPPGTNPVDSLKTMSVKARTRYITDSE 168

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R                G       +    +G R  D        +     + +  KT
Sbjct: 169 VRRIKVAVMYGDDGKRTRSGHTICALIDMAYLTGQRIGDLLTLRWSDVGKQGITFQPAKT 228

Query: 230 GTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                 ++   + + L               +  F     Q    +  S  +K    +AG
Sbjct: 229 EGSTGAQVLIAWTQRLRNVVDRLRALPNQSPDFVFCTLQGQPYTYSGASTAWKRAVKRAG 288

Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           V +   H +R  + T   D G    E        T  Q   Y +   +  L +  +R
Sbjct: 289 VKDCHFHDLRGKALTD-VDRGRGIMEAQRMGAHSTQSQTADYVRH--KRALKVDATR 342


>gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo]
 gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs]
 gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel]
 gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo]
 gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs]
 gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel]
 gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope]
          Length = 398

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 74/278 (26%), Gaps = 9/278 (3%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +P   P     ++ +Y  S         +R +  ++  ++ R  G           +R  
Sbjct: 55  APVPAPRDWMQILDDYLDSLAAAGYPSTTRATRAAHIRRLARGLGVSPENVTGASLVRFF 114

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            E       +   +  +    F WA R+  +  +P   +   K      RP      +  
Sbjct: 115 AEQEHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPSIKPAPPAPRPAPDRVYRAA 174

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPD 239
                  ++  L        GLR ++  +     L  +          K G   T+ + D
Sbjct: 175 LMA--ADARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYVLVVHGKGGKNRTLPVSD 232

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGVNKSAHGVRKFSAT 295
              +L+A    G                          +          + H +R   AT
Sbjct: 233 ELAELIARGAAGHTDGAPATGYLFPGDDAGHLSPRWVGRLCGDALPDGWTMHKLRHRFAT 292

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +         +    G  +V   E YT   D      
Sbjct: 293 RAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAA 330


>gi|297182902|gb|ADI19052.1| integrase [uncultured delta proteobacterium HF0070_07E19]
          Length = 380

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 113/366 (30%), Gaps = 39/366 (10%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTF---IPAYMSALTGST---------- 55
            V  +  R G   ++ R    G R  +     S       A  + L              
Sbjct: 13  GVFYQIDRKGNRTFFVRYKLQGSRKHIEERAGSEIHGMTAAKANLLRSERLSGKSNPNTQ 72

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            K        K   TL  L  EY  +            S  +  D+  +        ++ 
Sbjct: 73  RKLVEKAESSKNQWTLAKLWEEYAATRSSDPARP--YKSLGADEDRFNKHF--SSISQLQ 128

Query: 116 TKHIRSGVESRK-------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            + I      R         +P++       +R + ++   +      P     +     
Sbjct: 129 PEQIDHINYERWKRNIAKGRSPTTVCHCGELLRRIVRFGTERNLCNGLPFKLSLKKPDNR 188

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT 226
                  ++  Q  ++   E       F F L++GLR  +  R     +        ++ 
Sbjct: 189 TTEYLEREQLNQLIEALKLEEPITGNLFTFALFTGLRRGELLRLEWSDINFEQGIVQLRD 248

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            K G   T+ L +  + LL   P      +  F +    + + +     FK  A+++ + 
Sbjct: 249 TKAGKDQTLPLSEKALSLLENHPRHQSGCDYVFPSPQGCQWSRSSLDRVFKRIASRSNLP 308

Query: 284 KSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +     HG+R    ++ A+ GA   EL        V  +E Y   +D      ++ R+  
Sbjct: 309 EGFRLLHGLRHQYGSMLAENGANIVELRDLLRHSDVRVSERYLHSSD------EHLRKRI 362

Query: 341 SVVDSD 346
           +++ + 
Sbjct: 363 NLLGNQ 368


>gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319]
 gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319]
          Length = 434

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 31/283 (10%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138
           + +L+ +     E    + +   G  D     IT           + R    ++   +L 
Sbjct: 128 YLNLSHS-----ERNLREFVEDKGVQDIPIGAITEDLFEEYRFFLKKRGLKGTTINNYLC 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAF 196
            +  L   AV Q  +  NP    +  K + +    +      +   K   SE    RL F
Sbjct: 183 WLSRLMFRAVSQRIIRYNPFEHAKYEKEEKKIRFLQKSEVAKLATMKMNDSEAELARLMF 242

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            F   +GL  +D      +H+Q       +  K ++      +       + +      +
Sbjct: 243 VFSCLTGLAIADMEHLLYKHIQTAADGRKYIRKERQKTKGEFIVPLHPIAEAIINYCRNE 302

Query: 253 ETFFINNDKQK-----------MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
           +     +   K            + +             G+    S H  R    T+S  
Sbjct: 303 QEGNKAHQAIKEKGDSLVFPRDCSRSVMGKNLCIVGKACGIKERLSFHMARHTFGTMSLS 362

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           AG     +    G  ++   + Y +  D+     ++  R+ + 
Sbjct: 363 AGIPIESIAKMMGHASISSTQIYAQVTDKK--ISEDMDRLIAK 403


>gi|251810219|ref|ZP_04824692.1| integrase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806271|gb|EES58928.1| integrase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 371

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 96/354 (27%), Gaps = 38/354 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYIN 62
           +L L   + K+  R     YYFR  +  +       + T       A+        E   
Sbjct: 7   NLNLSHNIYKDAKRG---TYYFRITYYDKTNTRKEIKRTGFKQRKEAVKKCNEVMDELEG 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +        L+ EY +       + + +       + ++      D   +TT+ +   
Sbjct: 64  IGQINKLPFDKLVEEYTEWYSARRKSSSVKALKTHANNHLLPYFKSMDVFNMTTQDVMKF 123

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
             ++    H+     +    +  L   A++   +  N    V   + ++     +   + 
Sbjct: 124 QNTKLKEGHSGEYLKKMHVFLVSLLNHAMKFHDLKQNVASLVGNFEIESNKRLNYWTLEQ 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                      Q +L F+ L YSG R  +      + +  +   I   KT          
Sbjct: 184 FNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDEFIHINKTDYHGEVTAPK 243

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATK 279
                    +   + +     L                    +  + +    WF      
Sbjct: 244 TKSAIRDIYLPTHMMNDIKDYLNWYKENNIYKDDYVLFGTFFKAYSESTIDRWFTTALKV 303

Query: 280 AG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                           H +R   A++  + GA+   +    G    +  E Y +
Sbjct: 304 LDNQLPDGQTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSN--EVYNR 355


>gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
 gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme
           DSM 15981]
          Length = 288

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 78/263 (29%), Gaps = 12/263 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+ L+  + +     +L+ N+ +S+         +  + D   ++   +       ++ P
Sbjct: 19  LEALLGTFLRYMTAKNLSGNTILSYVYGVKTFFSRYPELDQNNVSLYKVYLME---RYRP 75

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    + ++    K     +Y   +  L  +           +     + ++       
Sbjct: 76  QTVNMRIRALNCFLKSQDIHDYKIPSVRLQQKSFIDHVISQADYEYLKNRLWEDEQYT-- 133

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAM 247
                  F+  +G+R S+     +  +Q     + ++   T             +  LA 
Sbjct: 134 -FYFIVRFIAATGVRVSELVALVLPDVQVGYRDLYSKGNKTRRIYIPSSLQKMCLDWLAA 192

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
                   FI+   + M  +      K  A +  ++      H  R   A    + G   
Sbjct: 193 EGRRDGPLFISRLGRPMTVSGIRKQLKTFAIRYHLDPEVMYPHSFRHRFAKNFIENGGDI 252

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             L    G  +++    Y +   
Sbjct: 253 AFLSDLLGHDSIETTHIYLRRTS 275


>gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae]
 gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae]
          Length = 319

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 82/270 (30%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R +              +Q          +G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKQLLDAPDTETLKGLRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGF 241
              LLY GLR  ++ +     LQ        +  G                      +  
Sbjct: 159 LAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIYAYLEQD 218

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
           ++  A       +         ++A       +A A KAG+   +   HG+R  +AT + 
Sbjct: 219 VERDAAPGPLFRSLRGTTTGAGISANGIYTVVEACAKKAGIVVEHLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71]
 gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635]
 gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71]
 gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635]
          Length = 349

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021]
 gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 10/265 (3%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K TTL  L+  Y            +  +F    D+I+  +    + +     +   +  R
Sbjct: 37  KETTLAELLQRYADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRKR 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ K          +E++   +   
Sbjct: 97  GNSNATINRKMAALGKLLRKAYKMGDIHNLPEFKRQKEKAGRLRFLEADEEEVLFREIAS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                  L   FL+ +G R  ++       +     +    K+G   TV L       L 
Sbjct: 157 RSELYLYL-SIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDALK 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA 302
                    F   D+QK     +   + A    AG+    +   H +R   A+     G 
Sbjct: 216 RVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G +T++    Y   A 
Sbjct: 271 DLRRVQMWLGHQTLEMTMRYAHLAS 295


>gi|308180893|ref|YP_003925021.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046384|gb|ADN98927.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 387

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/382 (11%), Positives = 96/382 (25%), Gaps = 54/382 (14%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK           G+R        S    A   A      K +         T   
Sbjct: 5   KKKNGKWAVRVSYYDEFGKRHFKNKSGFSRKKEAEQWATKLEQAKFDQSIGKTDTTTVFT 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
               ++ ++  +G ++  +   +     QI     +     +T    +  +         
Sbjct: 65  DYYEKWLETYKFGKVSRITEQEYRYTLRQIAELLPNVQLSSMTRLRYQQFINEFVHGNAK 124

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                        H+ SS  +    +      AV    +  + CL VE      +  +  
Sbjct: 125 QRAQRQLTDNQPYHSKSSVEKLHGHIHAAIIDAVADNLIKTDFCLHVELGGHSGKPAQLK 184

Query: 175 TKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                             +L           L +G+R ++        +     +I+  K
Sbjct: 185 YLNAKDMQTLAAEVNKNIKLISTGKSMIYTGLLTGMRVAEVSALTWTDIDWQNKTIRVNK 244

Query: 229 TGTIITVE---------------------LPDGFMKLLAMTPIGKETFFINNDKQK---M 264
           +   +  +                          +  L M         +    ++    
Sbjct: 245 SWDYVYGQKFKKTKTESSIRTITVTDDLLNHLKTLHALQMAAKLDNPDHLVFMNKRGRIP 304

Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
           +        K  +   G+ + S HG+R   A+     G     +    G K        Y
Sbjct: 305 SPGACDNLLKKYSDSLGIKRISFHGLRHTHASYLLYCGVKMEYISKRLGHKNSSITRNVY 364

Query: 323 TK--GADRIRLGIKNSRRISSV 342
                 D+ +   +  + +S V
Sbjct: 365 AHMIKEDQRQEDKRTLKALSQV 386


>gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 439

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 84/290 (28%), Gaps = 31/290 (10%)

Query: 68  PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119
           PTTL  L +   +S       S A  +  +       +     D     I  + I     
Sbjct: 102 PTTLLELSNTELQSVKEGVGKSKAEGTYTNLCYANRMLCEFIKDLGSTDIEIRSITEELF 161

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              R  ++ +    SS   +L  +  L  +    + +           ++  + IR  +K
Sbjct: 162 EEYRFFLKKKGLKGSSINNYLCWLSRLM-FRAVSQRIIRYNPFEHAEYEKVEKAIRFLSK 220

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            D+++  +     S     R  F F  ++GL  +D       H+++        +     
Sbjct: 221 SDVKKLMAMKICDSDAELARQMFIFSCFTGLAITDMEHLTFGHIKSAADGQMYIRKERQK 280

Query: 234 T--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T              +      +K +       +       +   + +  +         
Sbjct: 281 TKVEFIVPLHPIAKTIIEQQRQLKAVKEEGNNTDMDNRLIFQPCCSRSVLAAKLSIVGKA 340

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            G+ +    H  R    T+   AG     +    G  ++   + Y +  D
Sbjct: 341 CGIKQRLSYHMGRHTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQVTD 390


>gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 290

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 19/240 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           +  S+     Q +    +       +    I + +   K      ++  + ++S++  + 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYH 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
           +   ++ +  +P   +  PK + +     T E +    S       +G + +   E L  
Sbjct: 83  YLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +GL+ S+     ++ +  +   +  +       + +    ++ L              + 
Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSHAIEALKNYIEKGRKAKNGENT 201

Query: 262 -------QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYG 312
                  +K+         +    K   G   + + +R+  A      GA    +    G
Sbjct: 202 LFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLG 261


>gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
 gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1]
 gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9]
          Length = 290

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 19/240 (7%)

Query: 91  SRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFK 145
           +  S+     Q +    +       +    I + +   K      ++  + ++S++  + 
Sbjct: 23  TLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYH 82

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201
           +   ++ +  +P   +  PK + +     T E +    S       +G + +   E L  
Sbjct: 83  YLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYA 142

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +GL+ S+     ++ +  +   +  +       + +    ++ L              + 
Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSN-KERVIPIGSHAIEALKNYIEKGRKAKNGENT 201

Query: 262 -------QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYG 312
                  +K+         +    K   G   + + +R+  A      GA    +    G
Sbjct: 202 LFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLG 261


>gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
 gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35243]
          Length = 361

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 88/334 (26%), Gaps = 81/334 (24%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKI------------ 114
             +++E+ +        + +S  ++     +++              +            
Sbjct: 11  AQVLAEFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGR 70

Query: 115 ------------TTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                           IR+    +  R  + ++  + + S R    WA++  +++ +  L
Sbjct: 71  GFAAPELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGL 130

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF---------------------------------- 185
            +  PK         ++  + +  +                                   
Sbjct: 131 RLHSPKPDNSLPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNR 190

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
               G +     E L  +G+R S+     ++ +  +  +I+    G              
Sbjct: 191 VNPVGLRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGI 250

Query: 244 LLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            L                      F+     +++              AGV     HG+R
Sbjct: 251 ALDEYLEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLR 310

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT   + GA    +    G  ++   + YT 
Sbjct: 311 HTAATHLLNGGADLRCVQEILGHASLGTTQRYTH 344


>gi|298527920|ref|ZP_07015324.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511572|gb|EFI35474.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 278

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 82/258 (31%), Gaps = 8/258 (3%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHT 129
              +  +       +    +  +++    +     G+ +  ++T++ I +     +    
Sbjct: 4   SKAVEAFMGYQRI-NSGEKTIKNYKILLHKFDGHLGEKEISQVTSEDIFNFLVQNTEGQK 62

Query: 130 PSSAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSF 185
            S+     T ++  F +    V ++         + +  R   G +    ++D+     F
Sbjct: 63  QSTKRLKFTLIKAFFNFITANVDEKLPNPCHTQVLRKSFRDPTGRQWNILEKDVVDEIIF 122

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            ++  + RL  E +   G+R  +  +     L +    I   K+G    V      +   
Sbjct: 123 RTDNPRNRLMLELMARGGMRIGEVLKLRADDLDDRKLFIDRPKSGRQSEVVFIPKKVAER 182

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
               I             +  T      K      G+N   H +R+ +AT ++ AGA   
Sbjct: 183 LREYIRSNGISPAERIFPIGYTGARAIVKKSGQAVGINLCPHDLRRHAATYASRAGAPLE 242

Query: 306 ELMA-TYGWKTVDQAETY 322
            +         +   + Y
Sbjct: 243 IVSKVILRHANLATTQRY 260


>gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 319

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R +              +Q          +G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGF 241
              LLY GLR  ++ +     LQ        +  G                      +  
Sbjct: 159 LAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKVRFLPLHPVAAERIYAYLEQD 218

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
           ++          +         + A       +A A KAG+   +   HG+R  +AT + 
Sbjct: 219 VERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 314

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 73/289 (25%), Gaps = 35/289 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIR------ 120
           L   I+ +         +  +   + S   Q + + GD+          T          
Sbjct: 10  LHQHINGFLDHCRSRCFSEGTIEGYRSNLRQFVSRLGDYAAKHKVADFQTACTEIVMMET 69

Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKT 168
                 ++ +   ++  +++ + R    +         +  +    +             
Sbjct: 70  ITMKQADNPELKATTIRRYICAWRSFIAYLVKANVLDLSYDRFRFDLPKLPETLPKSVDM 129

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +           K       +    FE + YSGLR S+     +  +      I+   
Sbjct: 130 SVLDKLLDNPQCLPKQPHWMYLRNLCIFELMTYSGLRISEVSNLLMTDVYFAERQIRVIG 189

Query: 229 TGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKA 277
            G       IT  +       L            N+                    K  A
Sbjct: 190 KGQRTRLVPITDTVAKRIRAYLKERSASAVNIRTNHLFVGRGGKMLRPCSIRLSLHKMVA 249

Query: 278 TKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + G  ++ + H +R   AT           +    G K++   + YT 
Sbjct: 250 ARLGEEMHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTH 298


>gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
 gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC
           35239]
 gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris
           FB024-16]
          Length = 361

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 88/334 (26%), Gaps = 81/334 (24%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKI------------ 114
             +++E+ +        + +S  ++     +++              +            
Sbjct: 11  AQVLAEFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGR 70

Query: 115 ------------TTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                           IR+    +  R  + ++  + + S R    WA++  +++ +  L
Sbjct: 71  GFAAPELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGL 130

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF---------------------------------- 185
            +  PK         ++  + +  +                                   
Sbjct: 131 RLHSPKPDNSLPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNR 190

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
               G +     E L  +G+R S+     ++ +  +  +I+    G              
Sbjct: 191 VNPVGLRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGI 250

Query: 244 LLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            L                      F+     +++              AGV     HG+R
Sbjct: 251 ALDEYLEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLR 310

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT   + GA    +    G  ++   + YT 
Sbjct: 311 HTAATHLLNGGADLRCVQEILGHASLGTTQRYTH 344


>gi|260890962|ref|ZP_05902225.1| integrase [Leptotrichia hofstadii F0254]
 gi|260859515|gb|EEX74015.1| integrase [Leptotrichia hofstadii F0254]
          Length = 326

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 86/290 (29%), Gaps = 36/290 (12%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123
            KK  T+   +  + +      +  ++   + +     +     +     I+ K ++S +
Sbjct: 8   TKKEMTMAKCMDIWIE-NEHNYIKESTYALYLTIIEKHLKVYFKNRKISTISNKDLQSFI 66

Query: 124 ESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +            +  +    +T +  +  +A+++E +             K E +  
Sbjct: 67  LDKLNDGKLNGNGGLSRKTVKDMVTVLNAVLNFAIKREIIKKTQFEYKIPKDEKVEKMEV 126

Query: 174 WTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +  E+  +   +  +    R A     L +GLR  + C    + +      I    T   
Sbjct: 127 FDSEERMKIFEYIKKNMNCRTAGILLCLCTGLRIGEICALRWKEVDMARGIISINHTIQR 186

Query: 233 ----------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                   + +    + +L         + I+  ++ +    + 
Sbjct: 187 IYLSNAKKSEVIISEPKTQSSKRKIPIARELIPVLEKFKSEDGNYVISGTEKYIEPRTYR 246

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +FK       + K   H +R   AT + + G     +    G  TV   
Sbjct: 247 KFFKKMLGFLEIRKLRFHSLRHTFATQAIELGIDCKTVSEILGHSTVSIT 296


>gi|297559103|ref|YP_003678077.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843551|gb|ADH65571.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 422

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 106/398 (26%), Gaps = 62/398 (15%)

Query: 5   LRLPPFVTKERT-----RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           ++LP    +        R  +    +R  +G++   P          ++  + G   +  
Sbjct: 11  VKLPDGSARREKSASYGRGKRWAARYRDSNGQQKS-PKFRTKPEAERHLKKVEGELARGL 69

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           Y++ P     TLK    +  K+A     + +       +   +    G    R I    I
Sbjct: 70  YVD-PSAGQVTLKEFAEDVVKNASVEESSRHDLE--RRFRKHVYPFLGGSQLRAIRPSMI 126

Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  ++ R       +      ++ ++F+ AV  E +A NPC +           +     
Sbjct: 127 QEWIKGRSAELGDQTVRTVFDNLSMVFQAAVDDELIARNPCRAGSVKPPSVTRRKVIPWS 186

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR---------------AGVQHLQNNIF 222
                    +  ++ +         GLR  +                       L     
Sbjct: 187 VELVSGIRSALPARYQALVVPGAGCGLRQGEVLGLAVDDLSASKHTLHVRRQVKLMAGKP 246

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------------ 270
                K G    V LP   +  LA          +    +       +            
Sbjct: 247 VFAPPKGGKEREVPLPGHVLSALAAHMERFPPVAVTLPWKHFGGKPVTVSLIFTSRERKA 306

Query: 271 --------IWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELM 308
                     +K     AGV              +K  H +R   A++  D+G +   L 
Sbjct: 307 LNATYVNAYLWKPALVAAGVLPAPPAGERIQAAHDKGFHQLRHHYASVMLDSGVSVRALA 366

Query: 309 ATYGWKTVD-QAETYTKGADR-IRLGIKNSRRISSVVD 344
              G         TY     +      +   R  S VD
Sbjct: 367 DFLGHHDPGFTLRTYAHMMPKNEERAREAIDRAWSAVD 404


>gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
 gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906]
          Length = 330

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 97/292 (33%), Gaps = 35/292 (11%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT-- 129
            Y +S      +  SR +  S+   + +  G        +  +   HI++ ++   +   
Sbjct: 42  AYLRSLG----SKRSRQTMGSFLTIVAKMIGFSSIKHCQWGALRRHHIQAIIDMLSNADK 97

Query: 130 -PSSAIQFLTSMR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            P++   +L +++          L      Q    +        PK +            
Sbjct: 98  APATINTYLAALKGVALEAWAMKLMDTESYQHIRQVKSVRGSRLPKGRALTGHEIRALFR 157

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELP 238
              K   S+G +       LL  GLR S+      +H+Q      I   K        +P
Sbjct: 158 CCEKDHSSKGLRDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMP 217

Query: 239 DGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
           +   + + +               +   F +   +++         + +  ++G++K + 
Sbjct: 218 EDTWERVQLWIDEIRGSQDGALFTRIRRFDDVTDERITDQAIYYILETRQQESGIDKFAP 277

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
           H +R+  A+   D G     +    G  ++   + Y  +G DR+R   ++ R
Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRLRKAARHLR 329


>gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa]
          Length = 281

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 67/253 (26%), Gaps = 7/253 (2%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            ++ +     +        +  Y+     K G+    +++       ++ +   P    +
Sbjct: 13  DDWLEREAVDANRHGEHRKWLRYYLDFCHKYGNGYLDELSLGLFAEKLQDKGQHPFQIEE 72

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++R+ ++ A   +     P    ER  +                 +   E  + R  
Sbjct: 73  ASRAVRLYYRMAGETKDALPTPACEPERISKLPPATMKSEGASWVGELTRLREEIRIRHY 132

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L      S    A          S     T  +          + +A      +  
Sbjct: 133 SAKTL-----SSYYGWARKFQAFVRSKSPTLLDTDDVKRYLTWLAVERDVAQHTHSTDPR 187

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G 
Sbjct: 188 SGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 247

Query: 314 KTVDQAETYTKGA 326
             V     YT   
Sbjct: 248 SDVSTTMIYTHVL 260


>gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1]
 gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1]
 gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1]
 gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 332

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 75/292 (25%), Gaps = 36/292 (12%)

Query: 67  KPTTLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITT 116
            P +   L+  +   +       + ++  S+   F Q ++                +I  
Sbjct: 3   TPASFAALLERFFTQRLMQQRQASPHTISSYRDTFRQFLKFVQQRLHKSPSRLSLEEIDA 62

Query: 117 KHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             I + ++     R+ +  S    LT++   F++   +          V     K     
Sbjct: 63  PLIVAFLDDLEKCRRVSIRSRNLRLTAIHSFFRYVAFEAPEHSAQIQRVLAIPSKRFTRN 122

Query: 173 PWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223
             +     +              G +        + +GLR S+        L        
Sbjct: 123 LVSFLARAEVDALLAAPDQHTWSGRRDHAFLLVAVQTGLRLSEMTGLKRDDLILGAGAHV 182

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKAT 278
               K        L    + +L       +       F +   ++++             
Sbjct: 183 RVVGKGRKERCTPLAKSTLTVLKAWLREPQRGEGDVLFPSAKGERLSVHGVQYLLNKHRL 242

Query: 279 KA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            A            + H +R   A     AG     +    G ++V+  + Y
Sbjct: 243 AASEACPSLTQKRITVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|320195935|gb|EFW70559.1| Phage integrase [Escherichia coli WV_060327]
          Length = 303

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 99/295 (33%), Gaps = 17/295 (5%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+G+  +            TL   +  Y        +   + + + S    I RK  D  
Sbjct: 2   LSGNRRESLIDRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKP 61

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              I+TK + + + +   +   +SA    +++  +F+ A+ + +VA NP  +    K + 
Sbjct: 62  LADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEV 121

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              R    E +    +        RLA +  + +G R  D C+     + +N   I+  K
Sbjct: 122 RRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGK 181

Query: 229 TGTIITVELPDGFMKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           TG  + + L      L               G ET   +   + ++    S +F      
Sbjct: 182 TGAKLAIPLTLTIDALNISLADTLQKCREVSGSETIIASTHHEPLSPKTVSKYFTKARNA 241

Query: 280 AGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +G+       + H +R  SA                 G K+   A  Y     R 
Sbjct: 242 SGLSFDGDPPTFHELRSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 295


>gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 485

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 97/335 (28%), Gaps = 53/335 (15%)

Query: 41  STFIPAYMSALT----GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
                A   A+       +P +E        P      I+ + K      + + +  S+E
Sbjct: 130 KELADALQYAVANNWMKVSPIKEVDPRLDNSPVLFTDFITNWLKMMKSR-VEITTYTSYE 188

Query: 97  SYFDQ-IIRKSGDFDYR----KITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAV 148
                 I+       Y     +   K+I+   +       +A     +  ++R   ++A 
Sbjct: 189 RAIIHKIVPYFEPLHYTLQDMEQHPKYIQDFYQHELDRGLTANTVIHYHANIRKCLQYAF 248

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +   +  NP   VERP+++      ++ E+++Q  +                Y GLR S+
Sbjct: 249 QIGMIRSNPADRVERPRKEKFKSEIYSGEELEQLFTAIQGDPAEFGVIMAAFY-GLRRSE 307

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---------------------TIITVELPDGFMKLLA- 246
                   +      I  Q T                      +  T+ L     ++L  
Sbjct: 308 IVGLKWDAIDFENKKISIQHTVVTAKVNGTVTEIARDKTKTKSSCRTLPLIPACEQMLNK 367

Query: 247 ---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                                +  +++   +++     S  F        + +   H +R
Sbjct: 368 MKKEQEQNRKVCGKSYCTDYLDYIYVDPMGKRIRPDFLSQHFPDFLVAHQMKRIRFHDLR 427

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              A++    G +  E+    G   +      YT 
Sbjct: 428 HSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 462


>gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
 gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf]
          Length = 320

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 87/280 (31%), Gaps = 26/280 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSG 122
           +    T+  +  +Y            +  S E +  ++ I   + D + +++T + I   
Sbjct: 11  KTTNKTVGEIYEDYLNYCTSIGQREKTIESKERFGKYELIKVVNLDSNIKELTKEKIEKH 70

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +    +  ++   ++  +R    +     Y+        + P    E    +T+E++
Sbjct: 71  IINMRKEGYKGNTYQTYIIKIRAFLSYCFNNNYLTKFTV---KIPNVLLEKKEVYTEEEV 127

Query: 180 QQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            +     +  +      +      FLL +G R        V+ +  +  SI  +   T  
Sbjct: 128 IKLLKKPNINTCLVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKR 187

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKSA 286
            + +P      + +    +       D        +KM         K       V    
Sbjct: 188 QITVPLSNTLKVNLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVK--F 245

Query: 287 HG---VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           HG    R   AT++   GA  + +    G   +   E Y 
Sbjct: 246 HGVNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERYI 285


>gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 341

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 72/315 (22%), Gaps = 30/315 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+RIR           A+          + ++         L  LI  +         
Sbjct: 23  REGKRIR-KKFATRGEATAFELFTMKKVDDKPWLGEKVDNRR-LSELIKRWHDLHGQQLT 80

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAI 134
                       D I    GD    KIT     +  + R             K  P++  
Sbjct: 81  KP---ELRLRKLDLICNGMGDPIASKITVNDFANYRQMRLDGEIEDAQGKMNKVKPNTIN 137

Query: 135 QFLTSMRVLF---KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                +  +F   K     +       +S  + +          +  +   +   +E   
Sbjct: 138 HEHAYLNAVFSELKKLGEWKLPNPLDGISQFKIEDTELAFLYPEEIPIVLTECANAEYEH 197

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   L +G R S++       + +N  +    K     TV +       +      
Sbjct: 198 LTTIVLICLATGCRWSEAEGLRGSQIAHNRITFVKTKGKKNRTVPIAKELADKIPRARGP 257

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                            F    K         +  H +R   A+     G     L    
Sbjct: 258 LFRPC---------RKSFERAIKRTKLNFPDRQMTHILRHTFASHFMMNGGNILVLKQIL 308

Query: 312 GWKTVDQAETYTKGA 326
           G   +     Y   A
Sbjct: 309 GHSDIKDTMRYAHFA 323


>gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 432

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/429 (9%), Positives = 96/429 (22%), Gaps = 99/429 (23%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R +  K  Y F      G  ++  +                           + +  TL 
Sbjct: 7   RKKGKKWYYRFYVEDASGNLVQKEFAGTENKSETEKLLRQAMEDYEAKRFVAKAENITLG 66

Query: 73  WLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTP 130
            L+  +  +    G+L+  +  ++     +I +        + +T+ H++  ++      
Sbjct: 67  ELLDLWAEEELKTGTLSNGTVGNYLQTIGRIKQHPISKRKLKTVTSVHLQEFMDLLSFGG 126

Query: 131 SS------------AIQFLTSM----------RVLFKWAVRQEYVAINPCLSVERPKR-- 166
           +                F   +          +    +   Q  V  +     +      
Sbjct: 127 TVGDFISKGYSIDYVRSFSAVLQQSFRFAVFPKQFITFNPMQYVVMRHKKEETDLFADET 186

Query: 167 --KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQ----- 218
               + ++P + E  ++      + S+  +    +  ++GLR  +      Q +      
Sbjct: 187 AADRDKVKPLSFEMYRKLIEQLGKRSRDAILPVQIAYFTGLRLGEVAGLTWQDINLEEQY 246

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    + V      +  +      ++        +     
Sbjct: 247 LTVRRSVRYNGATHKHEIGPTKWKKVRVVDFGDTLADILRKAKKEQHKNRFQYGELYQRN 306

Query: 268 QFSIWFKA------------------------------------------KATKAGVN-- 283
            +    +                                               AG    
Sbjct: 307 FYREVMEKNRVHYEYYHLGMTENVPEDYTEIFFVCLREDGCLELPATIETACRTAGRKVP 366

Query: 284 ----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRR 338
                  H +R    T     GA   ++    G   V      Y       R   + S R
Sbjct: 367 ELEGFHFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHAT---REAKRTSAR 423

Query: 339 ISSVVDSDD 347
           I   V  +D
Sbjct: 424 ILDKVAGND 432


>gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA]
 gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
          Length = 386

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 73/258 (28%), Gaps = 14/258 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---Q 135
           RK      L  +++ +  +    +       ++  +T   +    +    +        +
Sbjct: 111 RKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKFLYESGYQTNTVAK 170

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
            +  ++     A+ + Y+  N         +  EG   +   +  +     S   +    
Sbjct: 171 HMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLTGRNSCL 230

Query: 195 -----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                AF F  Y+GLR SD      +++      +           E+      L     
Sbjct: 231 EHTLDAFLFCCYTGLRYSDFVNLNEKNIVKMDGKLWLIFDSVKTGTEVKLPLNLLFEGKA 290

Query: 250 IGKETFFINNDKQKMNAT---QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304
           +     +        +       +         A +  + S H  R  +AT+    GA  
Sbjct: 291 LTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLAKISKHFSFHSARHTNATLLIYKGANI 350

Query: 305 HELMATYGWKTVDQAETY 322
             +    G K +   + Y
Sbjct: 351 TTVQKLLGHKNLATTQIY 368


>gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2]
 gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115]
 gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117]
 gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26]
 gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2]
 gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115]
 gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117]
 gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26]
          Length = 349

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7]
          Length = 404

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 17/256 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
               +++ +  S    +       D++ +T   +R   +  +   ++     + +  +R 
Sbjct: 120 DKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTSLRDFEQYLREKGNAVNTIAKHMRQLRT 179

Query: 143 LFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEF 198
           L   A+ Q Y+  +     +   K++       T +++++ ++   E    R    AF F
Sbjct: 180 LVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLTPDELKKLETVEVEEESMRHVLDAFLF 239

Query: 199 LLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             Y+GLR SD C+   ++         ++    +    I          + L +     +
Sbjct: 240 CCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPD 299

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATY 311
                        ++ +   +  A   G+ K    H  R   AT+    G     +    
Sbjct: 300 IGSFAALPCN---SEVNKQLRKLAGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLL 356

Query: 312 GWKTVDQAETYTKGAD 327
           G  +V   + Y++   
Sbjct: 357 GHTSVKTTQIYSEVLS 372


>gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 328

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 92/321 (28%), Gaps = 42/321 (13%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            RE +  PR          + +        +  ++     S     ++    D++ R +T
Sbjct: 6   ARESMRDPRAGEMAFHEWHARW---CQARVVEPHTLRGDASSIKNHVLPHWADWEMRAVT 62

Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
              ++S +     ++   S+  +    +  + + AV  + +A++PC +++ P+   +  +
Sbjct: 63  RMDVQSWIRGLVEKRVGASAIKRAHNLLSSIMRAAVDDDVIAVSPCRNIDLPQIAIKPPQ 122

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------- 223
            +T +  Q         +  R       Y+GLR  +        +               
Sbjct: 123 WFTLDQAQSI--VDELPAPWRTMCLLGFYTGLRWGELASLHRHRIDQRRSCLFVVEVNTK 180

Query: 224 ----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------TQFSI 271
                  + + +   V LP   +  L       +   +                      
Sbjct: 181 SSIKEYPKSSRSRREVPLPPHVLDALERHIHLLDHDALVFTTIAKGRAGRRLDDGNWRRQ 240

Query: 272 WFKAKATKAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +      A             +   H +R   A+     G + +E+    G ++    +
Sbjct: 241 TWWPAIENAHYFDADGEQLPVPHYPPHSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQ 300

Query: 321 TYTKGADRIRLGI-KNSRRIS 340
            Y          + +   R+ 
Sbjct: 301 RYAHLQPDAHEAVLEAWERLD 321


>gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
 gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810]
 gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466]
 gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034]
 gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037]
 gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030]
          Length = 341

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
           ++       A  +  S+  +  + I         K++   +   +       K    +  
Sbjct: 31  KEHMLTRYYANKTIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAIDEKVAVKTQA 90

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++   +                 + +     T+++++  +       + +L
Sbjct: 91  LALNAISFLYRDFFKTPLSLDMRFQKS---LTEKKLPVVLTRDEVR--RFVQHIDPRYKL 145

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGK 252
             + L  SGLR  +  R  +Q +  +  +++  +       TV L     + L       
Sbjct: 146 HIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNFA 205

Query: 253 ETFFINNDK----------------------------------------------QKMNA 266
             ++  +                                                  +N 
Sbjct: 206 RNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRRHHINE 265

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      K  A  A + K+   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 266 SAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTH 325

Query: 325 GADR 328
             +R
Sbjct: 326 VIER 329


>gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 361

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 30/267 (11%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKW 146
            +   +  Y   +I      D+  IT++ + + +  R      P++    + +++  F+ 
Sbjct: 85  ATMELYARYITDLINYV-QKDFHHITSQDVDAFIRYRQLNGSKPATINTIIGALKSFFRH 143

Query: 147 AVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFE 197
            V      +     L   R   K       +    +       +G        + +   +
Sbjct: 144 LVDAGILTLNPTAFLKKRRNDTKQNLPGHLSHSLSESELQRLFDGMIEQGASLRDQALMQ 203

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------ 251
            L  +G+R  ++ R    H+            G           ++ L +          
Sbjct: 204 VLFLTGIRAEEAVRLKWSHIVTWQSRWYLDVFGKGSKRRRVYLPIQALTVIQEYGKLLGI 263

Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADA 300
                         +    + ++     +  K    +     + S H  R    T  A  
Sbjct: 264 ELGLASNSKPLFAHLRRPNEHISRHGLYVLVKKWCKRLLGRTDVSPHWFRHSCFTQLAHK 323

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           GA+   + A  G ++V+    Y + A 
Sbjct: 324 GASLESIKALAGHESVETTMQYNEAAQ 350


>gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 164

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           + +   E +  +GLR S++      ++  +   I    K      V +       +    
Sbjct: 2   RDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYY 61

Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298
                        +  F++  K  ++     +  K  A++AG+ + S H +R   AT   
Sbjct: 62  TEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLV 121

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G     +    G   ++  + YT  A+  
Sbjct: 122 QHGLDLRVVQDMLGHADLNTTQIYTHIANVR 152


>gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450]
          Length = 321

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 75/307 (24%), Gaps = 55/307 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           L+ +             ++ +  S+  +    I         ++ ++ +   +    ++ 
Sbjct: 8   LREVCE----HMRLSGYSIRTEKSYLYWIRSYIFYHEKRHPMQMGSEEVIQFLSYLANSR 63

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + AI           +  +         L      ++ +     T  +++Q  S      
Sbjct: 64  NVAINTQKVALNALVYLYQAFLKIELGELGFRHATKQRQLPVVITPNEVKQVLSH--LNG 121

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------------------- 218
           + +L  E L  SGLR S+  R  VQ +                                 
Sbjct: 122 KEKLIVELLYGSGLRISECLRLRVQDIDLSNLSITVRDGKGKKDRQTLLSKQCVDVLKLL 181

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                      N      +               +  + + P    +    N        
Sbjct: 182 IEQAEQVQIADNKHGIGPSLPYAIHKKYPNAFRKLAWMFIFPSPSISHSQYNSDHPSRHH 241

Query: 268 QFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             S   +   ++A          + H  R   AT    AG     +    G   V   + 
Sbjct: 242 LHSSVIRKALSRAVAKTTINKKVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQI 301

Query: 322 YTKGADR 328
           YT    +
Sbjct: 302 YTHVIGQ 308


>gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1]
 gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 397

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFNFKLSEIIENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDIDFIHEVVVINHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N+  +   A  ++
Sbjct: 260 IETPKTKSGTRQVPLSRETIQAFQRVIKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYN 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 320 MLFVRIVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 404

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 94/298 (31%), Gaps = 27/298 (9%)

Query: 72  KWLISEYRKSAH-WGSL-----AVNSRISFESYFDQIIRK------SGDFDYRKITTKHI 119
           + L+  ++K       L        +   ++  + ++           D   ++I    I
Sbjct: 108 RTLLELFKKHNEDARKLVGISKTPATLAKYDRCYRRLEEFMKVKYNISDISLKEIGHMFI 167

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                      K   ++  +F+ + +++   A    ++  +P  + +  + K       T
Sbjct: 168 TDFENYLRTESKCNENTTAKFMQTFKMIVIIAKNNGWIYTDPFSNYK-IRLKRVDRGYLT 226

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             ++Q+         +    R  F F  Y+GL   D        ++ +        T   
Sbjct: 227 DAELQKIMKKKFPTKRLEQVRDVFLFSCYTGLSYVDVKELKASDIRISFDGKPWIMTHRH 286

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHG 288
            T    +  +  +    + K    +   +    ++  + + + K  A   G+NK  + H 
Sbjct: 287 KTDTPVNVPLLKIPQAILQKYEGQLPKGQLLPVLSNQKLNSYLKEIADLCGINKNITFHL 346

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            R   AT +    G     +    G   ++  + Y +  +           ++  +D+
Sbjct: 347 ARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKD--MEVLAGKLDA 402


>gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606]
 gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606]
          Length = 429

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 79/270 (29%), Gaps = 20/270 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLT 138
             +   +            D          ++    I       +      P++A + + 
Sbjct: 149 AATLQKYNVCKKHFSNFLRDKYGRSDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 208

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
           + + +     +   +  +P L++     +       T E++ +  +      +    R  
Sbjct: 209 TFKTITILGRKLGVLHHDPFLNIRF-HMEPVNRGFLTDEEILKIANKDFGIGRLELVRDV 267

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--E 253
           F F  ++GL   D      +++                +VE     + +          +
Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           T+        +   + + + K  A   G+ K  + H  R   AT+S   G     +    
Sbjct: 328 TYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKML 387

Query: 312 GWKTVDQAETYTKGADRI--RLGIKNSRRI 339
           G   +   + Y +  ++       + + ++
Sbjct: 388 GHTNIKTTQIYARITNKKIEHDMDELADKL 417


>gi|313105649|ref|ZP_07791913.1| hypothetical protein PA39016_000100009 [Pseudomonas aeruginosa
           39016]
 gi|310878415|gb|EFQ37009.1| hypothetical protein PA39016_000100009 [Pseudomonas aeruginosa
           39016]
          Length = 375

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 90/294 (30%), Gaps = 27/294 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R    +P     T+   +  + +S     ++ ++   +    + +++   G      + 
Sbjct: 49  PRAAKFAPEASRETVAGFLGRWLESKR-KHVSSSTFEGYRKIVELRLVPALGSAMVVDLK 107

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K ++  +++ K +  +     + +R     A+ +E +  NP       ++    +    
Sbjct: 108 RKAVKDWLDTLKVSNKTLSNIQSCLRSALSDAMEEELIDSNPLAGWTYARKGEVKVDDVD 167

Query: 176 KEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
               ++ +    S   Q R   +F  ++G+R S+        +      ++  +  T   
Sbjct: 168 PFSPEEQQAILSSLDGQGRNLVQFAFWTGMRTSELVGLEWGDIDWLRGEVRVTRAMTQAA 227

Query: 232 ------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIW 272
                         +++L    ++ L               +      ++          
Sbjct: 228 KGKAEVTKTTSGRRSIKLLGPALEALKAQKAFTYLANQEVFQNPRTGERWAGDGPIRKTL 287

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
           +     KAGV  +  +  R   A++   AG     +    G       A  Y +
Sbjct: 288 WMYALKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAQQMGHSDWTMIARIYGR 341


>gi|301308504|ref|ZP_07214458.1| integrase [Bacteroides sp. 20_3]
 gi|300833974|gb|EFK64590.1| integrase [Bacteroides sp. 20_3]
          Length = 444

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 89/265 (33%), Gaps = 25/265 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG-----VESRKHTPSSAI 134
           + A+N+   +++ +  + +         D  ++ +    I +      ++ +  T +S  
Sbjct: 130 NRALNTLYQYKNTYRFMEKFLKEKYKVSDIPFKALDESFIEAFELYLRIDRKLQTGTSIG 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
                ++ + + AV +  V  +P      P +  +      +E++ +  +   +      
Sbjct: 190 HV-QRLKHIAQIAVNRAVVPYSPFKDF-SPMKPKQKQMYLNREELDKLMATTFDTPNRNF 247

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R  F F +++G+   D      +++  +       +T            ++LL +    
Sbjct: 248 TRDMFLFSVFTGICYCDMRNLTEKNVVQDYEGNLWIET--RRQKTGTPENVRLLDIAVKI 305

Query: 252 KETFFINND----KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGATA 304
            E +            +     +I  K  A + G+++  S H  R   A+      G   
Sbjct: 306 MEKYRGMAPDGKLFPMLTKESMNIHLKKMAVQCGIDRNLSFHMARHSFASQVCLSLGVPI 365

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G + +   + Y K  +  
Sbjct: 366 ETVSKAMGHRNISTTQRYAKVTNEK 390


>gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
 gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989]
          Length = 323

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 83/298 (27%), Gaps = 59/298 (19%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHTPSSAIQFLTSM 140
              +  +  S+  +    I         ++      + +      R  + S+    L ++
Sbjct: 17  RRYSKRTISSYIYWIKAFIHFHDKRHPSELGDADAARFLTYLAVERTVSSSTQRTALNAL 76

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
             L+   + +   ++      +R   + +     ++E+++   S      + +LA   L 
Sbjct: 77  AFLYNRFLEKPLGSMAEFTRSKR---QAKLPIVLSREEVKVLFSH--IDPKYKLAVGLLY 131

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------------------- 229
            SGLR  +  R  V  +  +   I+                                   
Sbjct: 132 GSGLRRIECLRLRVNDVDFSHLQIRIWNGKGFKHRLTTLAPELIPAIKCQIERANAFLQE 191

Query: 230 -----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                      G+  L     +  E    N  +  M+ +  +  
Sbjct: 192 DITYPEYCGVWLPDALARKYRNASKELGWQYLFPSYRLSIEPGTSNIRRHHMDESTLNKV 251

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +   +A +    S+H +R   AT    +GA    +    G   V   E YT   ++
Sbjct: 252 IASARKRAKLGKPVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHVLNQ 309


>gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
 gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 86/269 (31%), Gaps = 21/269 (7%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130
           I  +  +  +   L+  +  ++    +Q  R        +     ++   +    ++  P
Sbjct: 2   IEAFLHALQYERGLSPQTCTTYRYSLNQAQRYFHGE-LEQQKANALQSYLNHQRRKRIAP 60

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS-- 187
            +  +   ++R  F W  +      NP ++++ PK + +   +  + +++    +  +  
Sbjct: 61  ITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRKKTLPKTLSIDEITILLAPPNSE 120

Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                +    FE    +GLR ++          +     I T K G    + +       
Sbjct: 121 EPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGYQRRIFIGTHAKMA 180

Query: 245 LAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSA 294
           L+     +           F++N  ++++           A       + + H +R   A
Sbjct: 181 LSKWLNVRAQIAAPEEKALFVSNQGRRIHPRSVEYILHRYAQSRLPNRHITPHMLRHSFA 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
                A      +    G + +   + YT
Sbjct: 241 GHMLQACGDIRAVQDLLGHQRISTTQIYT 269


>gi|152965657|ref|YP_001361441.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
 gi|151360174|gb|ABS03177.1| phage integrase family protein [Kineococcus radiotolerans SRS30216]
          Length = 402

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/385 (11%), Positives = 97/385 (25%), Gaps = 54/385 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKG----------HGRRIRLPYPHESTFIPAYM------ 48
            R PP + + +   G I Y  R                     P                
Sbjct: 7   RREPPRIEERKNTDGSISYRVRVRLPDLSKPVVLGKPAPTKQVPKVFDTWADAEHFRQLI 66

Query: 49  ----SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103
                         +   +      T+   ++ + +      +   +R  +       I 
Sbjct: 67  RSIGLQRAVELVDAKTPAAEPVSRVTVASWLTHHVEHL--TGVTEGTRRDYLQMIAISIG 124

Query: 104 RKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G+     ++   +      +E R  +  +       +      AV   ++  N    
Sbjct: 125 PALGNIPLAVLSRDDVTGWVNEMERRGLSGKTIKNRHAFLSSGLTRAVG-VHLPTNVAKG 183

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS------------- 207
           +  P++  +   P      +      +     R     +  +G+R               
Sbjct: 184 IRLPRQDAKTREPVFLTPDEYRALELAMHPIGRPLLLLMAGTGMRIGEATALQVGDVDLT 243

Query: 208 ------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                    RA      N       +      ++ L D     LA    G+         
Sbjct: 244 GRDPVVRVVRAWKHTDNNTQELGPPKSRKGKRSIALSDAVADYLADLTAGRGPKEWVVTT 303

Query: 262 QKMNATQFSIW----FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
            + +A + + W    +     ++G+ K  + H +R   A+     G     + A  G + 
Sbjct: 304 SRGDAWRANYWREKYWHDAVKRSGIGKSPTPHDIRHSHASWLIAQGVVLPVIQARLGHEK 363

Query: 316 VDQA-ETYTK-GADRIRLGIKNSRR 338
           +    +TY    +D  R       R
Sbjct: 364 ITTTVDTYGHLSSDMHRTAAYAIGR 388


>gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 349

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 95/341 (27%), Gaps = 41/341 (12%)

Query: 20  KIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           K  +  R        +R                 A +        +N       T  ++ 
Sbjct: 11  KWYFSIRYKDVYGNNKRKLKRGFATK------REAKSEEARFLNEVNEGYSDSRTFDYVF 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + Y ++     L   ++    + +   I  K G  +  KIT    +   +    T  S  
Sbjct: 65  NHYLEN---SDLRPKTKKRKRNEYNKHIKDKFGHINMNKITQNQCQEFRKYLMETVPSTN 121

Query: 135 QFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              T          +A +   + I+P +S++   R     +     +  + +    +   
Sbjct: 122 TARTIWSGFKVVVNYAKKYFGLRIDPTISIKPIPRVKPRPKYM-LREEFEERVKDIKEQD 180

Query: 192 PRLAFEFLLYSGLRCSDSCRAGV---------------QHLQNNIFSIKTQKTGTIITVE 236
            R  F  + Y+GLR  ++                      + N     + +   +   V 
Sbjct: 181 YRELFTLMFYTGLRVGEAMALVWTDFNKYKKEISISKTMDISNRTIYPRPKTDSSEDIVP 240

Query: 237 LPDGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
           LP    ++L                        M    +    K    +A  N + H +R
Sbjct: 241 LPKFINEMLTQRYQREKSANKYFDERSYFIFGGMAPKHYQHAQKKF-QQAFPNYNIHTLR 299

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
              A+  A+ G     L +      + +   TY+    + +
Sbjct: 300 HSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
 gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1]
          Length = 283

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 75/268 (27%), Gaps = 15/268 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK+  TLK  I  ++        +  +   +            +   + IT + + S   
Sbjct: 2   RKETITLKN-IESFKTELIEEEKSTATINKYIRDIQTFYNYLQED--KTITKECVVSYKL 58

Query: 125 SRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                + P S    L ++   F +        +      +             +     F
Sbjct: 59  KLAKEYRPRSVNSMLVALNRFFVFL-NIPECQVKLNKIQKSVFGDDNKEMTKEEYKRLLF 117

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +      +  +  + +  +G+R S+     V  L+           G +  + LP    
Sbjct: 118 AAKSKNNERLYMIIQTICATGIRVSEHKYITVDALKKGRA--VIINKGKVREIILPIELK 175

Query: 243 KLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295
           +LL      +             + M+ +      K+    A V+      H +R   A 
Sbjct: 176 RLLLNYCKKQNIKCGPIFVTKGGKPMDRSNIWSSMKSLCEDARVDSQKVFPHNLRHLFAI 235

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
                      L +  G  ++D    YT
Sbjct: 236 TYYQLEKDLDTLASLLGHTSIDTTRIYT 263


>gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 405

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 108/401 (26%), Gaps = 73/401 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNKSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNRIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T     +E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLEKLTFHDACNEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
           + +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 NIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAKTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNV 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 DVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N K               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
                +    G        E YT   D+  +      ++  
Sbjct: 363 INLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 401


>gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25]
 gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25]
          Length = 335

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 81/301 (26%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  S+  +  + I          +    +   +         A++   
Sbjct: 25  KEHMLTRHYANKTIESYLFWIKRFITFHQLAHPSTLAEDDVVQFLSYLAVKEKVAVKTQA 84

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +           ++  +  ++   + +     T+E+++  +       + +L  +
Sbjct: 85  LALNSISFLYRDYFKTPLSLDMRFQKSLTEKKLPVVLTREEIR--RFVQHIDPRYKLHIQ 142

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  VQ +  +  +++                                
Sbjct: 143 LLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKAQVNLARDY 202

Query: 229 TGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQF 269
                 +         + L       E  F  +                        +  
Sbjct: 203 YFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGELRRHHINESAI 262

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  AT A + K+   H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 263 QRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 322

Query: 328 R 328
           R
Sbjct: 323 R 323


>gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 29/285 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S    + ++       +     D   + I    I        R  ++ R    ++   +
Sbjct: 121 KSRTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNY 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV Q  +  NP  + +  K   +    +      + + K    E  Q RL
Sbjct: 181 LCWLSRLMYRAVSQRIIRCNPFDNAKYEKEDRKIRFLQKSEVAKLVEMKMNDRESEQARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI 250
            F F  ++G+  +D  R   +H+Q +    +  +     T            + +     
Sbjct: 241 MFVFACFTGMAIADMERLQYKHIQTSADGQRYIRKERQKTKVEFVVPLHPIAEAIINHCR 300

Query: 251 GKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            ++                   +  + +             G+++    H  R    T+ 
Sbjct: 301 KEQENNEEWQTVKEKGDSLVFHRGCSRSVMGKNLCIVGKACGISQRLSYHMARHTFGTMC 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             AG     +    G  ++   + Y +  DR     ++  R+ + 
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDRK--ISEDMDRLIAK 403


>gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 407

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 17/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKH----TPSSAI 134
              AV +   + +    +           D    ++T + IR      K+    T S+  
Sbjct: 125 KDRAVRTYRKYLTVRKYVAEFIKFQYKRSDMSMNELTEEFIRDFCLYLKNVIGLTQSTIW 184

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
            +   ++ +   A     +  NP   +       +     T+E++  F     E      
Sbjct: 185 IYSIPLKHIVTAAHYNGKIQRNPFA-MYHVAPDHKEREFLTEEELDIFAGIELENPNFAF 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPI 250
            R  F F  ++G+   D       ++     S           V      +   + +   
Sbjct: 244 ARDLFMFGCWTGISFVDIKNLTEDNVAIISGSPWIVSQRQKTGVPFKIKLIDAAIQIIER 303

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K      +     +    +   K  A   G+ K  S H  R   A ++ + G     + 
Sbjct: 304 YKPLRKDMHLFNIGSLDMVNKRIKKVAKMCGIKKRISFHVSRHSFAVLALNYGMPIESVS 363

Query: 309 ATYGWKTVDQAETYTKGADRI 329
              G   +   + Y K     
Sbjct: 364 KILGHTDIATTQIYAKVTSTK 384


>gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 328

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 77/261 (29%), Gaps = 12/261 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTP 130
           L++++ ++      +  +   +E     ++           T     ++ S  E    + 
Sbjct: 53  LVTKFIEAKRIEGCSSKTLHYYEKSIRTMLAHVQKEVVHTTTEDLRSYLTSYQERGGLSR 112

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +   F W   ++Y+  +P   + R K        ++ E+++  +    E S
Sbjct: 113 VTVDNVRRILSSFFAWLEDEDYIVKSPVRRIHRVKTAENIKATYSDEELEAMRDSCHE-S 171

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +     + L  +G+R  +  R     +  N        K      V         L    
Sbjct: 172 RDLAMIDMLASTGMRVGEMVRLNRSDVDFNERECVVLGKGNKERIVYFDARTKIHLQAYL 231

Query: 250 IGKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +            +              +    + G+ K   H  R+  AT + D G 
Sbjct: 232 ESRTDGEAALFVGLRSPRSRLSISGIESRLRTLGRRIGMEKVHPHKFRRTLATRAIDKGM 291

Query: 303 TAHELMATYGWKTVDQAETYT 323
              +L    G K +D    Y 
Sbjct: 292 PIEQLQQLLGHKRIDTTLHYA 312


>gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4]
 gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5]
 gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973]
 gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis]
 gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4]
 gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5]
 gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973]
 gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606]
 gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 372

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 16/260 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E     P           +
Sbjct: 100 FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 159

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 160 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 219

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 220 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGR--MFVTTRMQKTKEIVHNPISDEAYGL 277

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     +           +   T AG+ K  + H  R    ++  + G     + A
Sbjct: 278 LGERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 337

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G K +   + Y+K A + 
Sbjct: 338 YLGHKNITTTQIYSKIAAQQ 357


>gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 356

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 102/329 (31%), Gaps = 16/329 (4%)

Query: 21  IIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +   +++  G    +R  + Y           S    +     Y    +    T + +  
Sbjct: 32  VTVSYKRKDGMRHQKRKIIGYYETEEMAE--FSLWNYNKNPALYAEIEKLGTITFENVYM 89

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           E+  S  + +++  +   +++ + +      +     +   H +  ++    + SS ++ 
Sbjct: 90  EW-SSTKYRNISQTAINGYKAAYAR-CSSIWNVRMSDLRAMHFQRIMDESTLSLSSDLKL 147

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            + M ++ ++AV+ + +  N    V   +++          + +  K F  E        
Sbjct: 148 RSLMMLVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEKLFDHENIPFVDTI 207

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
             ++Y+G R  +      + +     +I+           L     K+            
Sbjct: 208 LIMIYTGFRVGELFNIRREDVDVQNMTIRGGSKIEAGKNRLVPVHEKIQKYVMDYYLQGH 267

Query: 257 INNDKQKMNATQFSI------WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                      +F+       +F        +    H  R   AT  ++ GA +  +   
Sbjct: 268 EYLISDADTRKKFNYHMYRNQYFDKIMDMLEMEHLPHDCRHTFATRLSNYGANSTCIKKL 327

Query: 311 YGWKTVDQAE-TYTKG-ADRIRLGIKNSR 337
            G  +    E  YT     ++R  I   +
Sbjct: 328 IGHSSYTTTEKIYTHKDVAQLRRAISTLK 356


>gi|296110530|ref|YP_003620911.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295832061|gb|ADG39942.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 356

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 87/343 (25%), Gaps = 22/343 (6%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  K          + IR              +       K                  
Sbjct: 6   KRGKKWRAVVSVTGNKGIRKKISKTFDTKKEASAWSIEQENKSNNGYDVFSSKILYSDYY 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SA 133
            ++ ++     +  ++ I ++S+   +          ++T   I+  +     T +  S 
Sbjct: 66  IKWVETYKRPIIRESTYIRYKSWIKNVQNLFAGIRLDQLTNYRIQQLINQYGETHTLKST 125

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
             FL S+R   K A+   Y+  +    V               + E+ ++ ++F  E   
Sbjct: 126 QGFLVSVRSSLKDALLDGYIDKDIFSRVRANSHFETHKSENYLSAEEFERLQTFLYENQN 185

Query: 192 PR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                   L     L +G R  +        +Q N   I    + +      P     + 
Sbjct: 186 QMVQNSKLLMVLIALETGARLGEIFALRTSDIQPNKIIIDESYSASSHEYTAPKTNSSIR 245

Query: 246 AMTPIGKETFFINND----------KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
           +++   K    I N            +           +     AGV++   HG+R    
Sbjct: 246 SVSISQKLNSAIENYIKNTAKTDLLFKPQYRANVGHTLETILKHAGVHQIRFHGLRHSHV 305

Query: 295 TISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNS 336
           +     G     +    G        + Y              
Sbjct: 306 SYLLHKGVDIAYISKRVGHSNTTITLQVYAHLLKEKEQAQDAL 348


>gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47]
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/288 (9%), Positives = 70/288 (24%), Gaps = 27/288 (9%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
                  L+  +   +     Q+           +T   +R         R+    S   
Sbjct: 24  DDLQLAGLSKRTVHGYLRAVRQLAD-WAQTQPDHVTELQLRKYFLHLKNERQFAYGSIRV 82

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             + ++  +    ++ +      L+  + ++        T + +           +  L 
Sbjct: 83  AFSGIKFFYTRTCKRNW----ETLATMKLQQAKTLPEVLTIDQVHAIIDACRTE-RIALF 137

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKE 253
           +      GLR  ++    V  +      +   +        + LP   +  L        
Sbjct: 138 YWTTYSMGLRLDETRNLQVGDIDGKRMMVHIHRGKGAKDRYIPLPAETLLWLRRHWATHR 197

Query: 254 TFFINND------------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299
                              +  +  +         + K       S H +R   AT   +
Sbjct: 198 HPRFLFPAEGRDHKQSSTSQTPIQTSTVQKAIGKISVKLRFQKKVSTHTLRHSYATHLLE 257

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVDSD 346
           AG +   +    G  ++     Y    +       +   ++   +   
Sbjct: 258 AGVSLKVIQKYLGHSSLQTTMVYLHLTETAEANAREEIEKLFGNLPGR 305


>gi|307711155|ref|ZP_07647577.1| phage integrase family protein [Streptococcus mitis SK321]
 gi|307617117|gb|EFN96295.1| phage integrase family protein [Streptococcus mitis SK321]
          Length = 388

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 123/389 (31%), Gaps = 70/389 (17%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +                 +   S 
Sbjct: 3   ITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQ--KEVKQKANQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K  T+K    L + + +S    ++  N++ +  +   + I+   G++   K+TT  I+
Sbjct: 61  RQKAITIKNYQELATLWWESYK-NTVKPNTQGNVRALIDNHILPTFGEYKLDKLTTPLIQ 119

Query: 121 SGVESRKHTPSSAIQ----------FLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           S +         A +           + ++ + + ++ V  + +  NP   V  P+   +
Sbjct: 120 SIINKLADK---ANRGEEGAFLHYDMIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQK 176

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQ 218
             R   K    Q    +        + ++  Y           +G R +++       + 
Sbjct: 177 AKRQKLKHFDNQELKKFLVYLDNLDSCKYRYYYDVTLYKFLLATGCRINEALALSWSDID 236

Query: 219 NNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI-------- 257
            +   +   KT                  +++    + +L    + +             
Sbjct: 237 LDNAVVHITKTLNRDLEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRESV 296

Query: 258 ---NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
              +   +  +  +          +A V     HG R   A++  ++G    EL    G 
Sbjct: 297 VFSDFIHEYTSIVKLKKRLLTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQHRLGH 356

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISS 341
             +     TY+       L  +N+++  S
Sbjct: 357 SQISMTMDTYSH------LSKENAKKAVS 379


>gi|296444774|ref|ZP_06886737.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257722|gb|EFH04786.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 424

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 107/376 (28%), Gaps = 45/376 (11%)

Query: 14  ERTRHGKIIYY--FRKGHG--RRIRLPYPHESTFIPAYMSALTG-----STPKREYINSP 64
                GK  Y+  +R   G  +R+ L      T   A   A+                S 
Sbjct: 32  YILPTGKRTYFADYRNADGSRKRMTLGRHSVITCEEARKLAMAALGGVVKGADPLTERSS 91

Query: 65  RKKPTTLKWLISEYRKSAH--------WGSLAVNSRI-SFESYFDQIIRKSGDFDYRKIT 115
           R+   T+  L   Y ++A               ++           I+   G     ++T
Sbjct: 92  RRAALTVSDLCDLYLEAADKGLVTTRFHKPKRASTLAVDRGRIGRHIVPLIGSKKADRLT 151

Query: 116 TKHIRSGVESRKHT-------------------PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              ++   +                          +A + +     ++ WA R+ +V   
Sbjct: 152 RADVQRMTDDIAAGKTAGTFKTKLRGKAVVTGGAGTARRVVELFGGIWTWAERRGHVVGR 211

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                   ++     R  +  ++ +     K           A   +L +G R  +    
Sbjct: 212 SPTHGVETQKGDPKDRILSPAELARLGAVLKEKEEALPFAVAAVRLILLTGARREEIVGL 271

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                      ++ ++T T  ++      +  +       E  F+  ++           
Sbjct: 272 RWSEFDAAGSCLRLEQTKTGRSMRPIGSPVVAILSALPRDENEFVFPNRSGKRPADLKKR 331

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                  AGV+   +H  R+  +T + + G +     +  G  +       Y +  D   
Sbjct: 332 IAELFDAAGVDDARSHDCRRTFSTTADELGYSEATAGSIIGHASRGVTARHYIRRPDAA- 390

Query: 331 LGIKNSRRISSVVDSD 346
             ++ + +++ +++  
Sbjct: 391 -LVEAADKVAKLIERR 405


>gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 72/266 (27%), Gaps = 28/266 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQFLTSM 140
            ++  +       +     D     I  + I        R  ++ +    SS   +L  +
Sbjct: 125 ESTYTNLCYANRMLCEFIKDKGNEDIDIRTITEELFEEYRFFLKKKGLKGSSINNYLCWL 184

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
             L  +    + +           ++  + IR  +K D+    +     S     R  F 
Sbjct: 185 SRLM-FRAVSQRIIRYNPFEHAEYEKVEKAIRFLSKSDVANLMAMKMCDSDAELARRMFI 243

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------VELPDGFMK 243
           F  ++GL  +D       H+++        +     T              +      +K
Sbjct: 244 FSCFTGLAITDMEHLTFGHIKSAADGQMYIRKERQKTKVEFIVPLHPIAKTIIEQQRQLK 303

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
            +       +       +   +    +          G+ +    H  R    T+   AG
Sbjct: 304 AVKEEGNNMDMDNRLIFQPCCSRNVLAAKLSIVGKACGIKQRLSYHMGRHTFGTMCLSAG 363

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G  ++   + Y +  D
Sbjct: 364 IPIESIAKMMGHASIASTQIYAQVTD 389


>gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 411

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      N +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 342

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 71/302 (23%), Gaps = 41/302 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSGVE- 124
              EY        ++ ++  S+       +                  IT   +   +  
Sbjct: 16  FFQEYL--PTLRGMSRHTIRSYRDGMILFLGFATTDCRRPIESLTIADITADRVGRFLAS 73

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               R ++ ++    L ++    ++ + +    +     V     K        +     
Sbjct: 74  LESERGNSIATRNTRLAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAPIEYLETT 133

Query: 182 FKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231
                          G +    F  +  +G R  +     V+ ++           K   
Sbjct: 134 EVEALLAGIDRKTPAGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLEPPHQVRFTGKGNK 193

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATK---- 279
           I    +     +LL      +       D+          M         + +       
Sbjct: 194 IRLCPIWPRTAQLLKELIQKQTNDEDPADQHIFLNGRGAPMTRFGVRYLLQKRVAAGAEV 253

Query: 280 ----AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
               +      H +R  +A     AG     +    G  +++    Y +   D  R  + 
Sbjct: 254 APTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALA 313

Query: 335 NS 336
             
Sbjct: 314 QV 315


>gi|301058440|ref|ZP_07199461.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447496|gb|EFK11240.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 388

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 107/356 (30%), Gaps = 35/356 (9%)

Query: 4   SLRLPPFVTKERTRHG-----KIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGS-- 54
             +      + R R G     ++ Y   K  G+    ++   ++    PA  S +     
Sbjct: 8   KTKYAGIFYRIRNRIGGPGEERVYYAVFKQDGKMRETKIGRQYKDAMTPAKASHIRSEII 67

Query: 55  ----------TPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII 103
                       K E      +   T   L  EY+     +             Y + + 
Sbjct: 68  EGKRLTQKEKRLKEEAEREADESRWTFDRLWREYKAQKTVYKGKGP----DQNRYDNYLK 123

Query: 104 RKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G  + +++       +R  +     +P +    L  +R L  +  ++  +       
Sbjct: 124 EPFGGKEPKELLPLDVDRVRLKMLKAGKSPQTVKLVLALLRRLANFGAKKR-LCEGLRFI 182

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ 218
           +E P+     I   T E +        E   P+     + +LY+G+R S+  R     + 
Sbjct: 183 IEMPQVNNIKIEDLTAEQLDALMRAIDEDDHPQAGNLMKMVLYTGMRRSELFRLKWSDID 242

Query: 219 NNIFSIKTQKTGTIITVELP-DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                IK +     +   +P +   + L        + ++   +                
Sbjct: 243 GQRSFIKIRDPKGGVDQNIPLNDAARDLLKEHPSTGSPYVFPGRGGGQRVDIHHQVNRIR 302

Query: 278 TKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
            +AG+ K     HG+R   A++ A +G    + L      K+      Y    D  
Sbjct: 303 DRAGLPKDFRALHGLRHVYASMLASSGKVDLYTLQRLLTHKSPSMTMRYAHLRDEA 358


>gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
 gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM
           43017]
          Length = 329

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 88/308 (28%), Gaps = 46/308 (14%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-------------------- 110
             ++++Y         L+ ++  ++      ++      +                    
Sbjct: 13  AEIVADYEDHLRDERMLSQHTTRAYVGDVVSLLAFLHGVNEDGADGPSAHEEHPDGEHSD 72

Query: 111 -YRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +    +R+ +  +     + ++  + + S R    WA R+  +  +P + +  P+ 
Sbjct: 73  GVNGLHVGVLRAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRP 132

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                     ++  +       G+        +     E L  +G+R S+ C   +  + 
Sbjct: 133 HRRLPGVLRMDEATELMRVSEAGTATGHPVALRDHALIELLYATGVRISELCGLDIDDVD 192

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNAT 267
            +   ++   K      V       + L +                  F+    ++++  
Sbjct: 193 FDRRVVRVLGKGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPR 252

Query: 268 QFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                            +   HG+R  +AT   D GA    +    G  T+   + YT  
Sbjct: 253 TVRRVVHDAVAAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHV 312

Query: 326 ADRIRLGI 333
                  I
Sbjct: 313 TVERLKAI 320


>gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ]
 gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ]
          Length = 453

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/301 (7%), Positives = 75/301 (24%), Gaps = 47/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              ++            +  +  ++ ++  +      +   +++T   +++ +     T 
Sbjct: 137 WDAVLKTMADEIKVRHYSRKTLKTYANWSRKFQYFLKNRSPQELTGDDVKAYLTHLAVTC 196

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQ------------------------------------ 150
               ++  Q   S+  L++  +++                                    
Sbjct: 197 KVASTTQNQAFNSLLFLYRHGLKREFGELRDVPRAKKSLYIPTVLSREEIDAILAHLAYP 256

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             + +         + +   +R           +   +G + R                 
Sbjct: 257 FDLVVKLLFGCGLRQFECLQLRVRDFNFDAGKLTIHGKGKKDRTVPIPEAILPELKRQIK 316

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMN 265
             G  H ++             +  + P    + L      ++            +  ++
Sbjct: 317 LVGELHERDLAVGYDGVFLDDSVEKKYPKAPKEFLHQWFFPQKNLTLAAETGQQRRWHLH 376

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++          KA + K  ++H  R   AT    AG     +    G  ++     YT
Sbjct: 377 ESELQEALYPAVRKAKIPKRVTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYT 436

Query: 324 K 324
            
Sbjct: 437 H 437


>gi|324999081|ref|ZP_08120193.1| integrase family protein [Pseudonocardia sp. P1]
          Length = 385

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 109/375 (29%), Gaps = 41/375 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+ ++     V K          Y R   GR  R  Y +  T   A    +     + + 
Sbjct: 1   MSKNVNGDGSVWKRNDGRWSGAAYVRTSIGRTER-RYVYGRTKKEALSKLVE-LQDRHDK 58

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
                    T++  ++E+        +   +   +ES     +  + G      ++ + +
Sbjct: 59  GIPAGPTKLTVEQFLAEWLDHIKLH-VRPQTWAGYESNVRNHLTPRLGRKKLTALSVRDV 117

Query: 120 RSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           R  V+  K    +P       +++RV  + AV +E V  N   SV   +   + +     
Sbjct: 118 RLMVDDLKATGTSPRMVQWIHSTLRVALQHAVAEELVTRNVARSVRVAQPSRDSLTEPLT 177

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
            +  +      +  +    +  +L  GLR S+ C      +     ++K Q+        
Sbjct: 178 AEEAKEFLRAVKAHRLHGLWVTVLVLGLRRSEVCGLHWDDVDLGRGTVKIQRGLQRTGGR 237

Query: 229 --------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------- 265
                     +  TV LP   +  L      +        +                   
Sbjct: 238 LQELPTKTRRSRRTVPLPAMVVDALREHQERQRAERTAAVRGTWTDTPYVFTSSVGTSLE 297

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
               +  F A   + G  K   H +R    ++    G     +M   G   ++     Y 
Sbjct: 298 PRTLTRTFHALLERHGFRKVRLHDLRHTCVSLLLSLGVHPRIVMEIVGHSAIEMTMNVYG 357

Query: 324 KG-ADRIRLGIKNSR 337
               D  R  +    
Sbjct: 358 HVTLDSQRDALDLLN 372


>gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 326

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 76/306 (24%), Gaps = 27/306 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                     A+       T  + ++        TLK ++  + K  H  SL    +  +
Sbjct: 3   KQFATKGEALAFERHTMDETEAKPWLGESVD-RRTLKDVVELWFK-LHGKSLTAG-QHVY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRV 142
           +     ++   G+     +T+K      + R               +P +     + +  
Sbjct: 60  DKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTVNLEQSYLSS 118

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLL 200
           +F    R    +    L   R     E    W   +         +   P LA      L
Sbjct: 119 VFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++       +     +    K     ++ +     + +               
Sbjct: 179 STGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ 238

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   F    +  +      +  H +R   A     +G     L    G   +    
Sbjct: 239 --------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTM 290

Query: 321 TYTKGA 326
            Y   A
Sbjct: 291 RYAHLA 296


>gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 349

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 92/337 (27%), Gaps = 43/337 (12%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK +   Y     GRRIR    +      A+ +     +  + ++     +   L 
Sbjct: 5   KQKNGKWLCELYPNGREGRRIR-RQFNTKGEAEAFEAFTKSESEDKPWLGKKEDRRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            +I  +        +A  SR++       +    GD    ++T K      + R      
Sbjct: 63  EIIQLWHNLHGQALVASKSRLAK---LQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEID 119

Query: 129 ------------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175
                        P +  +    +  +F    R  E+   NP   +   K   + +   T
Sbjct: 120 NGYHKDPAKWIAKPITVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLT 179

Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              + +      +  +  L    +  L +G R  ++ R     L     +    K     
Sbjct: 180 LSQLPELFRACEQYGKEDLTMIVKVCLATGARWGEAERLTRPQLSPYKLTFTKTKGKKNR 239

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGV 289
           TV +P      L+                          FK       +  +     H +
Sbjct: 240 TVPIPKWLYDELSERQGRMFKPCYQE-------------FKKMLKLTNIELTEGQKTHVL 286

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R          G     L    G   + +   Y   A
Sbjct: 287 RHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFA 323


>gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC
           17978]
          Length = 233

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 21/211 (9%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189
           + LTS+R   KWA + +Y+ INP    +  ++          E + Q             
Sbjct: 3   RHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQPMPEKPVDQ 62

Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + +   E L  SGLR ++     ++ +  N   ++          V       + L
Sbjct: 63  QLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAKESL 122

Query: 246 AMTPIGKETFFINNDKQKM----------NATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                    +  + D+                Q     K +A +AGV  +   H +R   
Sbjct: 123 LNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLRHCF 182

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+    +      +    G   +   + YT 
Sbjct: 183 ASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 213


>gi|88703783|ref|ZP_01101498.1| Integrase [Congregibacter litoralis KT71]
 gi|88701610|gb|EAQ98714.1| Integrase [Congregibacter litoralis KT71]
          Length = 377

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 86/336 (25%), Gaps = 24/336 (7%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINS 63
            +  P + K  T+    I++  K      RL      S    A    +      R+    
Sbjct: 2   SKRTPGLYKRGTQG---IWHIDKCVRGYGRLHESTGTSELEEAERYLIRRLEEMRKANVY 58

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIR 120
             +   + +   +++            S   +      +    GD   R++   T +   
Sbjct: 59  GIRVERSFRQAATKFLLDYQHK----RSIGRYAQSLKILDPHVGDLPLRRVHQGTLESFI 114

Query: 121 SGVESRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                +    ++  + L  +R +     +       +       + +     +  +P+  
Sbjct: 115 RHRRKQGMRANTINRDLAVVRRILTLAARLWRDDSGLTWLETAPLLQLLDCDDARKPYPL 174

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228
              +Q + F       R    F + +G R  +          +      +          
Sbjct: 175 SWDEQARLFARLPEHLREMALFKVNTGTREQEVVCLRWDWEVSIPELKTSVFVVPGGGVK 234

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            G    V +      ++         +     K +      +  ++    + G+ +   H
Sbjct: 235 NGEDRLVVMNAEARAVINRQRGRNPEYVFTYSKGQPVDRINTKAWRRAREEVGLPQARVH 294

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++          G +        G K       Y+
Sbjct: 295 DLKHTFGRRLRAKGVSHETRQVLLGHKNGQITTHYS 330


>gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC
           33200]
          Length = 391

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 109/383 (28%), Gaps = 59/383 (15%)

Query: 14  ERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F+       +G+ I        ++  A   A+     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYMFQIYLGTNSNGKPIITRRRGFKSYAEA--EAVFNKMSQIKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  F + +I   G+    KIT   ++   + + 
Sbjct: 70  IKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    +     LF++ +R  YV+ NP   +  PK+ +   R        + +    
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDELNQF 188

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNIFS 223
                  G  P   F+ L  +GLR S++       +                     I  
Sbjct: 189 LEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGKTIIQ 248

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFK------ 274
                    I          L+      K          K    + S    W K      
Sbjct: 249 PPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVN--------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A K  +          + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADRIRLGIKNSRRISSV 342
           + YT      +        +  +
Sbjct: 369 DIYTHI--NKKNTEDAVNALKQL 389


>gi|310642954|ref|YP_003947712.1| prophage lambdaba04, site-specific recombinase, phage integrase
           family [Paenibacillus polymyxa SC2]
 gi|309247904|gb|ADO57471.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Paenibacillus polymyxa SC2]
          Length = 369

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 102/376 (27%), Gaps = 54/376 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
             V +   R     Y           GRR +     +S        A      + E    
Sbjct: 3   GHVYQ---RGKTWTYIIDLPSDPLTGGRRQKTKGGFKSE--KEAWKACHLKIAEIEKGTY 57

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T+   + EY ++    +    S  + ++  + +II   G    + +T + I++ 
Sbjct: 58  TDDSKITITEFLLEYLETHAKPNFKPTSFDTEKTIIEARIIPVLGKIRLQSLTPRIIKTF 117

Query: 123 VESRKHTPSS--AIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWT 175
               + + S          ++   + A  +     E +     +  +    + + ++ WT
Sbjct: 118 YADLRKSYSKEYVKNIHGVLKRALRLAYTESGLLSEDIMSKVSMRNKVNANEQKEMQFWT 177

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
            E+  QF     +     + F   +Y+G+R  +        +      ++  +T      
Sbjct: 178 IEEFTQFLDSSRDHVH-FIVFSLAVYTGMRRGEILGLRWSDIDFEQKELRVIQTANWTRN 236

Query: 232 --------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +  E      K    T    +          + 
Sbjct: 237 GLVIQRPKTNDSIRRVKLFQLIIDDLRLRQEQIKEHKKQYGETYEDNDLVCCYPWGGYIK 296

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
             + +        KAGV K   H +R   A+     G          G  T     E Y+
Sbjct: 297 PKRITEGMDVLVRKAGVKKIRFHDLRHTHASFLLRIGINPKVAAERLG-MTPAMFNERYS 355

Query: 324 KGADRIRLGIKNSRRI 339
                  +  +   RI
Sbjct: 356 HLLPT--MQDEAVDRI 369


>gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 285

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 12/269 (4%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + +K+  T   LI  +         + ++   ++     +    GD    K +      
Sbjct: 3   QAKKKRDIT-PELIKRFSVYLREQEKSTSTIEKYKRDLAVLCNFLGDVPITK-SALIDWK 60

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              +R +  +S    L ++     +A     + + P         + E      +     
Sbjct: 61  EYLTRNYAAASVNTMLAAVNAFLNFAG-WIDLKVKPLKIQRNLFCREEKELTRKEYLRLV 119

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +      +  L  + +  +G+R S+     ++ +Q     +  +      T+ LP+  
Sbjct: 120 QAAEREGNQRLSLVIQSICATGIRVSELQFITMEAVQAGRADVNCKG--KTRTIFLPEKL 177

Query: 242 MKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294
            + L      ++  F         + ++ +      K     A V       H +R   A
Sbjct: 178 RRALISYARRQKRSFGPVFVTKTGKPLDRSNIWRDMKDLCKSADVKPEKVFPHNLRHLFA 237

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
            I          L    G   ++    YT
Sbjct: 238 RIYYTLEKDLFRLADILGHSNINTTRIYT 266


>gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1]
          Length = 404

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 117/380 (30%), Gaps = 60/380 (15%)

Query: 14  ERTRHGKIIY-------YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            + + G   +       Y + G  +  +     +   +      +          ++   
Sbjct: 31  YKDKQG--YWNAQILLGYSQNGKPKYKKFRGKKQGEVVEK----MNNFKLCAGTASAAIV 84

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SG 122
           +   L  LI+ Y ++    S+   S  S     +Q+    G      +T + I+    + 
Sbjct: 85  QSMALDNLINTYIETVKKVSIRSTSYDSVLVSANQVNEHLGYLSISNLTPEIIQTDLINK 144

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDM 179
           +    +   +  +    +     +AV ++Y+  NPC+ V+ P     + +  R    +++
Sbjct: 145 MIELDYAYGTIHKAYVILNECLNYAVFKDYITKNPCMGVKLPSKDNFEKKERRFLNDDEI 204

Query: 180 QQFKSFWSEGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFS-------- 223
           Q FK+            +++         Y+GLR  +      + +              
Sbjct: 205 QTFKAQACVSQSNFNIPKYVYGNIICLILYTGLRVGELSALKWKDIDFQHKILSVNKAVV 264

Query: 224 ----------------IKTQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQK 263
                             T K+G    + L    +++L           + F +N  KQ 
Sbjct: 265 VVYDYSAKPKKRTLTVQDTTKSGKPRVIPLNQKAIQILETQRSLFGGDDDCFIVNGTKQI 324

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
            + T  +  +   A  A +      H +R   A+ +   G     +    G  +V     
Sbjct: 325 PDKTVVANSYSKIARAAKIPDPSGIHTLRHTFASSAIRKGVDIKVVSEILGHASVTFTYN 384

Query: 321 TYTKGAD-RIRLGIKNSRRI 339
           TY    D +    ++    I
Sbjct: 385 TYVHIIDEQKARAVELLNDI 404


>gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 303

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 91/289 (31%), Gaps = 27/289 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESR 126
             L + +  +  +   A  +R +F     +      +         ++T + +    E  
Sbjct: 19  AALFTTFLDAHDF---ASGTRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHL 75

Query: 127 K----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       S+  + L ++R  F W   Q +VA NP + V+  +R     +   ++ +++ 
Sbjct: 76  RREKGQAVSTVNRALVAVRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKL 135

Query: 183 KSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKT--------QKTGTI 232
                     R +  F L  Y+G R  D     +Q L     S           ++    
Sbjct: 136 LREVELRQDVRASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVP 195

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           + +         L   P  KE      ++  +            +   GV    H  R  
Sbjct: 196 LPLPARKSIQAYLDTRPPVKEQIVFIGERGPLTDRGVRAMCDKYSALIGVKLHPHLFRHT 255

Query: 293 SATI-SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
            A    AD       L    G + ++    Y + + D++      + ++
Sbjct: 256 MAHQFLADNENDLVALAQLLGHENLNTTARYARRSHDQL---ADAADKL 301


>gi|50915150|ref|YP_061122.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
 gi|50904224|gb|AAT87939.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS10394]
          Length = 387

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 118/370 (31%), Gaps = 48/370 (12%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++      +       +               
Sbjct: 9   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITGRTRKEVNQKAKHAQLDFLSNGSTIK 68

Query: 65  RKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
           RK    T K L   + ++     +   +  +  +     I+   G+    KIT   I+  
Sbjct: 69  RKVVIKTFKELSHLWLETYKLT-VKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQML 127

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKEDM 179
           +        +     + +R + +  V    +  N    +  P+++    + ++     D+
Sbjct: 128 INRLSKYYVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSDL 187

Query: 180 QQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           + F          R       + ++ LL +GLR  ++C      +     +I   KT   
Sbjct: 188 KSFLEHLETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNK 247

Query: 233 --------------ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSI 271
                           + +    ++ L +  + +   F                   F+ 
Sbjct: 248 NLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFNA 307

Query: 272 WFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    +TY  
Sbjct: 308 SVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYGH 367

Query: 325 GA-DRIRLGI 333
            + D+ +  +
Sbjct: 368 LSKDKEKEAV 377


>gi|78486459|ref|YP_392384.1| Phage integrase [Thiomicrospira crunogena XCL-2]
 gi|78364745|gb|ABB42710.1| Tyrosine recombinase [Thiomicrospira crunogena XCL-2]
          Length = 433

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 91/316 (28%), Gaps = 31/316 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L         +     K    K  + E+            +   + SY   ++I   G+ 
Sbjct: 68  LAKIEKATAKLVPGYTKTPLFKDFVEEWFSEMEPTWRKA-TADGYRSYLDKRLIPHFGEM 126

Query: 110 DYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           +   IT   I             K    +  +F+  + ++   A  +         +++ 
Sbjct: 127 EVSSITKAEILKYRAHVAKQSAGKLKSKTINKFIKCLNMVMNEAADRYDFTPPHL-NIKP 185

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF- 222
            K +   I P++ E++ Q  +      +  L      ++G+R  +      +H+  +   
Sbjct: 186 LKEEKVHIDPFSIEEVNQILAQVRSDWRDYL--LVRFFTGMRTGEIDGLKWEHVDFSRRE 243

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNA 266
                         T+  G+   +E+       L+     ++      F   N       
Sbjct: 244 ILIRETYSAGRWEYTKNDGSQREIEMSTLVYNTLSKRFKERDPKSELVFCTGNGAPVHTP 303

Query: 267 TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                 ++   +   +     +  R  +ATI   AG   + +    G  T       Y +
Sbjct: 304 NFLRRVWRPLLSYLKLKYRKPYQTRHTAATIWLAAGENPNWIAKQMGHSTTSMLFTVYAR 363

Query: 325 GA-DRIRLGIKNSRRI 339
              +  R       R+
Sbjct: 364 YVPNLTRKDGSAMERL 379


>gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVES 125
            TL+ L   +         +  +   +       +            +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKAT 278
           G    V +    +  L                              + T  ++  +A   
Sbjct: 199 GKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRE 258

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes]
          Length = 321

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 81/305 (26%), Gaps = 52/305 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SS 132
           L+ + R+       ++ +   +  +  + IR       +++    + + +         S
Sbjct: 7   LLDQVREQIRLRHYSIRTEAVYLEWVKRYIRFHKYRHPQEMGGPEVEAFLSDLAVRRDVS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  +     +   V +     V R +R        T+E++    +        
Sbjct: 67  ASTQNQALSAILFLYKQVLQVELPWMDGVIRARRPQRLPVVLTREEVASVLA--QLDGTL 124

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN------------------------------NIF 222
            L    L  SG+R  +  R  V+ ++                               ++ 
Sbjct: 125 WLIASLLYGSGMRLMEVLRLRVKDVEFARLEILIRDGKGQKDRVTMLPRKLAAPLELHLQ 184

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------N 265
            ++      +            LA         +                         +
Sbjct: 185 RVRALHEQDLREGYGRANLPHALARKYPNAAAEWGWQFVFPSVNRSEDPRSGGIFRHHLH 244

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +    + G++K  + H +R   AT   ++G     +    G   V   + YT
Sbjct: 245 EKTIQRAVRNAVRRVGLHKPATPHTLRHSFATHLLESGQDIRTVQELLGHADVKTTQIYT 304

Query: 324 KGADR 328
              +R
Sbjct: 305 HVLNR 309


>gi|4204419|gb|AAD10711.1| Int44 [Oenococcus phage fOg44]
 gi|57281914|emb|CAD19155.1| Int44 protein [Oenococcus phage fOg44]
          Length = 364

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 86/336 (25%), Gaps = 28/336 (8%)

Query: 16  TRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R         +    G  +RI             + + +           + +     L
Sbjct: 5   KRGPNWYARVSRPNSRGGYQRINKGGFSTKREAQTWEAEVLTGKE------TKKDSDLLL 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                ++ ++    +L   +  +++S +  + +   D           +  + +    H 
Sbjct: 59  ADYFKQWYETYKL-NLENQTLSAYKSTYLLLKKYEPDTLLTDFNRGKFQQLINAYGKNHA 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  +    +    K A   + +     L +                + ++ +   +  
Sbjct: 118 MNTVKKRKVLIAASLKDAYADKLINDPVDLRINLVYSNKGKSADLKFLEKEEAQKLINYC 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVE 236
            +      FLL + +                         +  +      +   T     
Sbjct: 178 IENHSLSNFLLLTCILSGARFGEISALVMSDIDQNARTISITKSKEQKTDKIKSTKNETS 237

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                M ++    + K +F  + +         +   K    K      + HG+R   A+
Sbjct: 238 NRVISMPIVWFQQLKKYSFDSDKELFPYTDQSMNRHLKVLCNKLDTKSVTIHGLRHTHAS 297

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +    G +   +    G   +   E  Y+   +  R
Sbjct: 298 LLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333


>gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3]
          Length = 388

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 91/281 (32%), Gaps = 20/281 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG--DFDYRKITTKHIRS 121
            PTTL  L +E  K+    S +  +  +        +  +R     D     +T +    
Sbjct: 100 TPTTLLALSAEELKAQRECS-SAGTYRNNRYADRLLNSFVRSRSEQDVPLSALTIEFFED 158

Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                K   + P++    L  +  L   AV Q  +  NP   V+    +    R  +K D
Sbjct: 159 YRFYLKRAGYAPATINGHLCWLSRLMYRAVSQGTIRFNPFEEVKYEVVER-KPRFLSKGD 217

Query: 179 MQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +  +F  +       R  F F +++GL   D        ++ N    +  +     T 
Sbjct: 218 VSKLLAFPFQDKGAELSRRMFLFSVFTGLAFVDLQGLRASQIETNSEGKRYIRKARQKTE 277

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV------NKSAHG 288
                 +  +A   +   T   +    K+     S W         G+        + H 
Sbjct: 278 VESLIPLHPIAEQILALYTKAKSRGDYKIFPDTMSDWKLLRHLKAVGLACGIRTPLTWHC 337

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R    T++ +AG     +    G  ++   + Y +  D+ 
Sbjct: 338 ARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQK 378


>gi|25012111|ref|NP_736506.1| hypothetical protein gbs2073 [Streptococcus agalactiae NEM316]
 gi|77408130|ref|ZP_00784876.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|77413191|ref|ZP_00789389.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|315612060|ref|ZP_07886977.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
 gi|24413655|emb|CAD47732.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160731|gb|EAO71844.1| putative integrase/recombinase, phage integrase family
           [Streptococcus agalactiae 515]
 gi|77173230|gb|EAO76353.1| integrase/recombinase, phage integrase family, putative
           [Streptococcus agalactiae COH1]
 gi|315315862|gb|EFU63897.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis ATCC 49296]
          Length = 421

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 104/374 (27%), Gaps = 72/374 (19%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAH 83
              G+++       +  +     A+  +  + E   S R+K     TL+ L  E+ KS  
Sbjct: 36  IKTGKQVT--TTITAKTLKQLDRAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYK 93

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT------------- 129
               + N+      Y  + II K GD+   KI +  I+  +                   
Sbjct: 94  TWVNSHNTLNRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNDLAKKSKESIESGIKRAD 153

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KE 177
             SA      +  ++ +F + +    +  NP  +V+ P +     +              
Sbjct: 154 KGSAKDFGAVIHKLKDIFDYGITNYGLITNPVSTVKIPPKPKSNKQRIMVLHDDGLVIWL 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +  +         + +L    LL S LR ++     +  L                    
Sbjct: 214 NYLESLDNNRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANK 273

Query: 222 ----------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   +       +            L      K  F    
Sbjct: 274 KDGTKGEVICKATPKTDAGNRSVPVPPPIIEKLRDFHHEMNKYLELHNRHRTKLIFPTIY 333

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                +  +     K +    G+     H  R   A++  +AG    EL    G K++  
Sbjct: 334 GNYMCDRNE-RTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSIST 392

Query: 319 AE-TYTKGADRIRL 331
              TY + A + +L
Sbjct: 393 TMDTYAELAPQRKL 406


>gi|257468514|ref|ZP_05632608.1| hypothetical protein FulcA4_04184 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062774|ref|ZP_07927259.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688450|gb|EFS25285.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 341

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 104/346 (30%), Gaps = 28/346 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           ++   R P    K  +  G I         +R+ L Y   S        A          
Sbjct: 13  LSGKRRRPYVAVKTVSLKGGIQ--------KRVILGYYEGSK------EAKIALAEYNRD 58

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF--ESYFDQIIRKSGDFDYRKITTKH 118
                    T   +  +  K      +   +  ++  +    +      +   + I    
Sbjct: 59  PYDLTAAKITFYEVYEKMMK----QDIEKVTSKTYSFKKSLVKFFEPVYNTPIKDIKLAI 114

Query: 119 IRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           ++   +S + ++  +     +    +F +A+++E V  N  + ++  K+  + I+     
Sbjct: 115 LQQLFDSNKSYSYGTLSLKKSLCIQIFDFALKRELVEKNYGILIDINKKNEKVIQRKIFT 174

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             +  K +   G Q       ++Y+GLR  +     +  +                   L
Sbjct: 175 SDEIDKLWELSGIQDVDIILTMIYTGLRIGELLELKISSINLEDRYCIAGSKTEAGKDRL 234

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-----KATKAGVNKSAHGVRKF 292
                ++L +      T  I   +   N       ++A        K  +  + H  R  
Sbjct: 235 IPFNYRILPVITRYISTEKIYLFQSIRNKKIKYTNWRATKFIPLMEKIKMEHTIHDCRHT 294

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNS 336
            A++ ++A A    +    G    D  E  YT    + ++  +   
Sbjct: 295 FASLLSNADANTTAIAKIIGHSNYDMTEKIYTHKDIEELKKAVDRI 340


>gi|218779949|ref|YP_002431267.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761333|gb|ACL03799.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 373

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 96/334 (28%), Gaps = 18/334 (5%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK  +     +G  +R         I   + A   +            +    K L  +
Sbjct: 7   RGKTWWIKYYHNGEMVRESSGSAKKMIAKELLAKREADIAYGRTPGVHFEKVLFKDLAED 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAI 134
           + +          +R        ++ R  G      ITT  I   +E R    +   +  
Sbjct: 67  FLRDYRINKKRSLARADL--CVRKLKRSFGRDSVPAITTPRINQYIEMRMEEGAANATIN 124

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           + L++++ +      Q    ++    ++  +        +  ++    +    +  Q  +
Sbjct: 125 RELSALKRMLNLGAEQTPPLVDRVPKIKMLQEDNVRTGFFEHDEFLGVRDALPDYLQGFV 184

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPI 250
            F +    G R  +        +  + ++ +    T K      V L    +++      
Sbjct: 185 TFGYKY--GWRFQEIAGLTWAQVDRDRWTARLEVGTTKNKAGRMVFLDPELIEIFKTQWK 242

Query: 251 GKETFFINNDKQKMNATQ------FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGAT 303
            +            N             +K    +AGV+    H +R+ +      AG  
Sbjct: 243 QRSKHINILPYVFPNRRHTGKIVEIRFAWKNALKEAGVSYKLFHDLRRTAVRNMVRAGVP 302

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            +  M   G KT    + Y    +R  L     R
Sbjct: 303 ENVAMRVSGHKTRAVFDRYNIVDERDLLMATELR 336


>gi|320458354|dbj|BAJ68975.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 401

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 99/379 (26%), Gaps = 60/379 (15%)

Query: 18  HGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G+   +         G R R       T   A  +A   +    E I     +P T+  
Sbjct: 23  NGRYRAFVELSPNPADGSRRRTSATG-HTRTEALNNARAKARRIEEDITL-VDEPPTVNE 80

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES------- 125
            +  +         A N+  S+    +  I    G     ++   HIR            
Sbjct: 81  WMRRWIDEIVTPRRAPNTTRSYRFRIEHDITPVIGAVRMDRLKPAHIRLVERHCLEGNPA 140

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  +P++A    T +    K AV +  +  NP  +VE+ +     I   T       
Sbjct: 141 KGIQGKSPATAALTHTVLSEACKAAVAEGIIRSNPVDAVEKNRVPPAPIATLT-PGQAAM 199

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------------QN 219
                   +  + +  L  + LR  ++       +                         
Sbjct: 200 LIHAETDPRWSIIWRLLFITALREGEALGVTRNEIVRSDGLPCLLVEWQLKEFDGITDMP 259

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------- 264
             F  +     T +T        +L+ +                                
Sbjct: 260 AGFEARRLDGRTWLTRPKTRSGRRLIPLPADLAADLAAYTADHPDIDPDTPLFRSGRGNP 319

Query: 265 -NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    ++    + G+ +   H  R  +AT  A  G +     A  G   +      
Sbjct: 320 IRKETLQNAWRKALERVGLPRVRVHSARHTAATAMARIGVSDLARRAIIGHADIGTTNAI 379

Query: 322 YTKG-ADRIRLGIKNSRRI 339
           YT   AD +   I    R+
Sbjct: 380 YTHVDADMLAGAIDGVERL 398


>gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 318

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 82/304 (26%), Gaps = 43/304 (14%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRS---GVESRKH 128
             +       + + N+  ++    D  I        D +   I    I+      E    
Sbjct: 18  ENFLNELKSQNYSKNTITAYSQEIDYFIEFFRGFQDDMEIIDINRPFIQQSLIFREENSK 77

Query: 129 TP----SSAIQFLTSMRVLFKWAVRQEY-----------VAINPCLSVERPKRKTEGIRP 173
           T     ++   +L ++   F +                 + I      +    + E  R 
Sbjct: 78  TGKIATNTKKMYLKALYQFFVYLTDAMNGIKDFTTLFSKIKIKAETRQKEYLNEVEIKRL 137

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----- 228
               ++++ K       +  L  + LLY+G+R S+     +  +          +     
Sbjct: 138 LNYINVKKNKRMSFITCRNILLIKILLYTGMRASEVINIKLSDITTYEQDKNIIQIRIIG 197

Query: 229 --TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-------ATK 279
                           + L  T + ++   I ++      T   +  +           K
Sbjct: 198 KGNKEGFCYIDHLKISEELEDTLLFRKRLNITSEYLFTTKTGRQMTRQEAFLATANILKK 257

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG--IKNS 336
           AG+  K  H  R       A  G    ++        ++    Y     + R    I   
Sbjct: 258 AGINKKGLHLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYV----QRREADKINGI 313

Query: 337 RRIS 340
           ++I 
Sbjct: 314 KKID 317


>gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
 gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus
           faecium TX1330]
          Length = 409

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 103/395 (26%), Gaps = 69/395 (17%)

Query: 16  TRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +  Y     +G        ++I             +   + G     EY  +   K
Sbjct: 12  KKSKEYRYEVYISNGIDPGTKLQKKIHKKGFKSHEEAERFAKIVEGEIASEEYTQN-NPK 70

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T++  + ++  +    ++   +RI   +     I    G +   K T    +  +   
Sbjct: 71  NLTIEKFMDDWINNYKM-NVKEGTRIVHRANIKMYITPYIGKYKLDKYTRADHQRFINQL 129

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + ++A     ++   FK A++  Y+  NP   VE P+  ++  +   
Sbjct: 130 LTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLRYIKNNPTSFVEFPRNPSDKKKVKY 189

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
               Q          +    +          GLR S++       +  +  ++   +   
Sbjct: 190 YTFDQSELFLEFAKKEKSFIWYPFFLIIFDQGLRKSEALGLQWADIDFSQNTLNINRERL 249

Query: 231 ---------------------TIITVELPDGFMKLL------------------AMTPIG 251
                                   ++ +     K L                        
Sbjct: 250 GAAEKGPNKGLIITDDTKTPSGTRSLPMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFL 309

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
               +  N    +     +        +A +   + H  R   A  +  AG    ++   
Sbjct: 310 FINTYRKNKGIPIRDRTVNGASHRIEKRANLPHITVHDGRHTFAARTRQAGIPLEDIKDF 369

Query: 311 YGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVV 343
            G K V   + Y   +   + R   +    I   +
Sbjct: 370 LGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQI 404


>gi|296158318|ref|ZP_06841149.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295891262|gb|EFG71049.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 348

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 96/327 (29%), Gaps = 24/327 (7%)

Query: 15  RTRHGKIIYY--FRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R R G   ++  FR   G RIR             Y   L     +   +    K+  T 
Sbjct: 4   RKRKGSPTWHIDFRTPGGERIRQSTGTANKKEAEEYHDRLKAELWRVSKL--GEKQKRTW 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--------SGV 123
                   K +      VN+      +     +         IT   I            
Sbjct: 62  DEAAVRMLKESAHLRSFVNT----RIHLRYFRKFFAGRLLESITRDEIYEALPELSARTK 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + +  +  +   +L +MR +F  A+  E++A  P L      + +     +   D  Q  
Sbjct: 118 QPKPLSAKTKNLYLGTMRHMFNLAIEWEWLAQAPILKA---AKVSNKRFRFLTRDEAQRL 174

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG 240
                    R        +GLR ++        +       +    Q           + 
Sbjct: 175 IAAISTEWLRDVAILGFATGLRRANLLGLEWSQVDLVNRRAWIHADQAKARKAIGVPLND 234

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
               +    IG+    +   + ++     S  ++ +  +AG+ +   H VR   A+  A 
Sbjct: 235 EAVAVIRRWIGRHPTHVFVRRGRIIPNVISEQWQNQCKRAGIEDFRFHDVRHTWASWHAQ 294

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
           AG   + LM   GW   +    Y   A
Sbjct: 295 AGTPLNRLMELGGWTKYEHVLRYAHLA 321


>gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++         G     D+R++T  H+ +     +H     ++  + L ++  
Sbjct: 39  PRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R +              +Q          +G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGF 241
              LLY GLR  ++ +     LQ        +  G                      +  
Sbjct: 159 LAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIHAYLEQD 218

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298
            +  A       +         + A       +A A KAG+   +   HG+R  +AT + 
Sbjct: 219 NERAATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1]
 gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1]
          Length = 391

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 90/365 (24%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 18  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 75

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 76  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 133

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 134 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQAL 193

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 194 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 253

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 254 IETPKTKSGIRQVPLSRETIQTFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYN 313

Query: 268 QFSIWF----KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +              +   + H +R    T  A       +L    G   +      
Sbjct: 314 MLVVRMVKKYNKYHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 373

Query: 322 YTKGA 326
           Y   +
Sbjct: 374 YAHAS 378


>gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606]
 gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606]
          Length = 362

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 88/305 (28%), Gaps = 33/305 (10%)

Query: 68  PTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----- 119
           PTTL  L +   +S       S A  +  +       +     D     I  + I     
Sbjct: 44  PTTLLELSNTELQSVKEGVGKSKAEGTYTNLCYANGMLCEFIKDLGSTDIEIRSITEELF 103

Query: 120 ---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              R  ++ +    S+   +L  +  L  +    + +           ++  + IR  +K
Sbjct: 104 EEYRFFLKKKGLKGSTINNYLCWLSRLM-FRAVSQRIIRYNPFEHAEYEKVEKAIRFLSK 162

Query: 177 EDM---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            D+      K + S+    R  F F  ++GL  +D       H+++        +     
Sbjct: 163 SDVKKLMAMKMWDSDAKLARRMFIFSCFTGLAIADMEHLKFGHIKSAADGQMYIRKERQK 222

Query: 234 T--------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
           T              +      +K +               +   + +  +         
Sbjct: 223 TKVEFIVPLHPIVKTIIEQQRQLKAVKEESNNTNMDNRLIFQPCCSRSVLAAKLSIVGKA 282

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            G+ +    H  R    T+   AG     +    G  ++   + Y +  D      ++  
Sbjct: 283 CGIKQRLCYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCK--MSEDMD 340

Query: 338 RISSV 342
           R+ + 
Sbjct: 341 RLIAK 345


>gi|240948184|ref|ZP_04752584.1| integrase [Actinobacillus minor NM305]
 gi|240297477|gb|EER47991.1| integrase [Actinobacillus minor NM305]
          Length = 373

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 97/329 (29%), Gaps = 17/329 (5%)

Query: 9   PFVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           P +   R +  K+ +YF+        R +L    +     A    L   +   E  +   
Sbjct: 32  PHLRLYRYKT-KMTWYFKGCFHYRDIREKLGSYPQLKIADAKSLVLERLSQI-EANSYVH 89

Query: 66  KKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K+  T+     E Y  S        N           +++   +      + + +     
Sbjct: 90  KRKMTVGQFFDEVYIVSVQAHQR--NYISELSKCRLYLLKPYSERTLLSFSHQELSRYFH 147

Query: 125 SRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 SSA   + +   R  F+ AV    +  +P   +++        +   +   +QF
Sbjct: 148 RLHEKLSSATTNRIIAIYRKFFRLAVENGLLNKSPAEYIKQYPECNIRKKVLNEAQCKQF 207

Query: 183 KSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPD 239
            +      ++  LA    L +G+R  +        +     SI     K G+   + + D
Sbjct: 208 LTLCQKRNTKSALALALSLLTGMRIGEVISLTSDVIDFADKSITLTHTKNGSSHHLPITD 267

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGVN-KSAHGVRKFSAT 295
               +L                 +      S     FKA   +  +     H +R+   +
Sbjct: 268 KVYDVLICCMKANPLSHYLFPSDRTVTGHISPPKGLFKALMGEMQLEGFRIHDLRRSFGS 327

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324
           +  +       +      ++++    Y  
Sbjct: 328 LLLEKTDNLQLVAQALNHRSLNTTRRYAH 356


>gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 325

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 84/281 (29%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+   +    G        +  +   H++  +E    +   P++   +L++
Sbjct: 44  SAASRQTMRSFLHIVAGMLGARALQHCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSA 103

Query: 140 MR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++          L      Q+ +A+         + +               +    +G 
Sbjct: 104 LKGTAREAWMMKLMDTDSYQQILAVRAVRGSRLTRGRALTPEEVRALFSLCEQDKSCKGP 163

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +       +L  GLR S+        +     +++   K        +PD   + L    
Sbjct: 164 RDAAMLAVMLGCGLRRSEVVGLDYASILEQDQALRVLGKGNKERLAFMPDTVWQRLRHWT 223

Query: 250 IGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                 +      ++                      +  + G++  + H +R+  A++ 
Sbjct: 224 DSVRGEYPGPLFTRIRAGDDVTSERLTPQAVYHILNERRMQCGIDNCAPHDLRRTFASMM 283

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  +V   + Y +  D R+R      +
Sbjct: 284 LDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRAAGKIK 324


>gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA]
 gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA]
          Length = 349

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 98/342 (28%), Gaps = 41/342 (11%)

Query: 19  GKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           GK  +  R         R+++  +  +     A    L                  T  +
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTKREAKRAEAIFLNDVNEGYSDSK-------TFDY 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +   Y ++     L   ++   ++ +      K G     KIT    +   +      +S
Sbjct: 63  VFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAS 119

Query: 133 AIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                T          +A +   +  +P +S++   R     + +   +  + +    E 
Sbjct: 120 TNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEKRIKDIEE 178

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFM 242
              R  F  + Y+GLR  ++            + +  N     + +T            +
Sbjct: 179 QDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDI 238

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGV 289
             L        T     +K+         +F             + K  KA  + + H +
Sbjct: 239 VPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHAL 298

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 299 RHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|186687194|ref|YP_001870337.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469497|gb|ACC85296.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 337

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 95/310 (30%), Gaps = 35/310 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           L   T       +  + PT ++W+ + E+ +S    +LA NSR  +E    + +    + 
Sbjct: 17  LNAETALLTGRTASTRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLA-WSEL 72

Query: 110 DYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY-----VA 154
            Y ++  +H+    E  +           + SS    + +++  FKW             
Sbjct: 73  HYHELRPRHLALYKEYLRDEIRTDAGNPLSKSSINAGIAALKSFFKWMSYTYPEIIATNP 132

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                  + P    + + P   E +        E  Q   A   +L  GLR  +  +  V
Sbjct: 133 TLGIKLEKVPLPPAQSLTPEEMERVWSALELLQETKQRDTALVHILSHGLRAGEVVQLNV 192

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINND 260
                 +  +   KT     V L     ++LA                     +   +  
Sbjct: 193 GSFDGKLLFLPDTKTNEPRLVPLRKESREVLAEYLQLRSQQGEVLNSDSPLMISHHASYK 252

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            ++++        +     A + +   H  R   AT     G          G ++    
Sbjct: 253 GERLSYHGIYFAVENIGELAQIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAF 312

Query: 320 ETYTKGADRI 329
             YT  +++ 
Sbjct: 313 RRYTLRSEQE 322


>gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23]
 gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 25/284 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIR 120
           TL  L  E   S         A ++     + +  ++      +   D    ++    I 
Sbjct: 107 TLMALFKEQLASYKEKIGKGKAESTYRGLVADYKSLLLFMKSKKNIEDIAIDELEKTFIE 166

Query: 121 SGVESRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                   T  +A       + +++ L   A  + ++ ++P +S E            ++
Sbjct: 167 DYYTWMLGTAGNANATAFNRVNTLKWLLYIAQERGWIRVHPFVSFECVPEYK-KRSFLSE 225

Query: 177 EDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++Q+         + R     F F+ ++GL  +D       ++  +           + 
Sbjct: 226 EELQKMIHLELNHKRQRANRDMFLFMCFTGLAYADLKAITYTNIHTDSDGGTWLMGNRVK 285

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG--VNKS 285
           T       +  +A+  I K            +              K    K G  V  +
Sbjct: 286 TGVAYVVKLLPIAIELIEKYKGVNERKISPEHVFPVGEYQALLSSLKYIGKKCGCKVEVT 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   A ++   G     L    G  ++   + Y +  +  
Sbjct: 346 PHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAELINPK 389


>gi|261366729|ref|ZP_05979612.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571556|gb|EFB77091.1| integrase/recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 327

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 78/295 (26%), Gaps = 18/295 (6%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
                    ALTG T  R+      +   T+      +  +      +  +   +     
Sbjct: 23  KQLKAVLEKALTGVTVHRDKAADVSESVDTVS----LFITAKRIEGCSEKTLNYYRQTIF 78

Query: 101 QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
            ++   G    ++ITT+ +R         RK +  +       +   F W   ++++  +
Sbjct: 79  AMLSGIGKL-AQEITTEDLRRYLTDYQTQRKSSKVTIDNIRRILSSYFSWMEDEDHIVKS 137

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   + + K        ++ E ++  +       +     + L  SG+R  +        
Sbjct: 138 PVRRIHKVKTAKVIKETYSDETLEIMRD-NCSSIRDLAMIDLLASSGMRVGEMSALNRDD 196

Query: 217 LQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------- 268
           +  N               V         L      +            +          
Sbjct: 197 INFNERECVVFGKGSKERIVYFDARTKIHLQNYLESRSDSNPALFVSLASPHGRLQIGGI 256

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                +            H  R+  AT + D G    ++    G + +D    Y 
Sbjct: 257 ERRLRELGRRLDLPRVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYA 311


>gi|322691066|ref|YP_004220636.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455922|dbj|BAJ66544.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 401

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 99/379 (26%), Gaps = 60/379 (15%)

Query: 18  HGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G+   +         G R R       T   A  +A   +    E I     +P T+  
Sbjct: 23  NGRYRAFVELSPNPADGSRRRTSATG-HTRTEALNNARAKARRIEEDITL-VDEPPTVNE 80

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES------- 125
            +  +         A N+  S+    +  I    G     ++   HIR            
Sbjct: 81  WMRRWIDEIVTPRRAPNTTRSYRFRIEHDITPVIGAVRMDRLKPAHIRLVERHCLEGNPA 140

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  +P++A    T +    K AV +  +  NP  +VE+ +     I   T       
Sbjct: 141 KGIQGKSPATAALTHTVLSEACKAAVAEGIIRSNPVDAVEKNRVPPAPIATLT-PGQAAM 199

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------------QN 219
                   +  + +  L  + LR  ++       +                         
Sbjct: 200 LIHAETDPRWSIIWRLLFITALREGEALGVTRNEIVRSDGLPCLLVEWQLKEFDGITDMP 259

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------- 264
             F  +     T +T        +L+ +                                
Sbjct: 260 AGFEARRLDGRTWLTRPKTRSGRRLIPLPADLAADLAAYTADHPDIDPDTPLFRSGRGNP 319

Query: 265 -NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    ++    + G+ +   H  R  +AT  A  G +     A  G   +      
Sbjct: 320 IRKETLQNAWRKALERVGLPRVRVHSARHTAATAMARIGVSDLARRAIIGHADIGTTDAI 379

Query: 322 YTKG-ADRIRLGIKNSRRI 339
           YT   AD +   I    R+
Sbjct: 380 YTHVDADMLAGAIDGVERL 398


>gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14]
 gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14]
          Length = 411

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
 gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785]
          Length = 390

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 121/382 (31%), Gaps = 58/382 (15%)

Query: 14  ERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F+       +G+ I        ++  A   A+     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYMFQIYLGTNSNGKPIITRRRGFKSYAEA--EAVFNKMSQIKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++    +   ++    +  F + II   G+    KIT   ++   + + 
Sbjct: 70  IKVSELRDLWFENYKTQA-KESTANKNKQVFDNHIIPDFGNQYIDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    +     LF++ +R  YV+ NP   +  PK+ +   R        + +    
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDELNQF 188

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------IT 234
                  G      F+ L  +GLR S++     Q +  N  ++   KT          I 
Sbjct: 189 LEVAKEYGLVQYTYFKLLSSTGLRKSEALALTWQDIDLNNNTLSVNKTLAYGLGGKTIIQ 248

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-------------------- 274
                   ++L ++   KE       KQK+ +++     K                    
Sbjct: 249 SPKSPKSKRILPISDSLKEVLIDYKQKQKILSSKLFHTIKGTYLRMSKPDQWLNSIYAKD 308

Query: 275 -----AKATKAGVN-------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-E 320
                  A K  +N        + HG R   AT+  A+       +    G + +    +
Sbjct: 309 HQDKVKYAEKYNLNPLPDLKRITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLD 368

Query: 321 TYTKGADRIRLGIKNSRRISSV 342
            YT      +        +  +
Sbjct: 369 IYTHI--NKKNTEDAVNALKQL 388


>gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
 gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787]
          Length = 411

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 88/380 (23%), Gaps = 73/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G+  Y +    G++  +   +  + +            + + ++        + +
Sbjct: 18  YRKGDGRYSYVYIDPLGKKRTI---YAKSLVKLREREEQLQKDQLDGLDIYVAGKADVNF 74

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   Y  +     L   +  ++   ++       G    R +    +        +    
Sbjct: 75  LFDRYISTK--TELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGL 132

Query: 133 AIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            I  L ++  + +            R+  V    C   +R     +  R  T +  ++F 
Sbjct: 133 QINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTVDQQRKFM 192

Query: 184 SFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTG 230
            + ++       +    FLL +G R  ++       +           +  +  +   + 
Sbjct: 193 EYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRIIDINHSLTYYQRADDSY 252

Query: 231 TI-------------ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                            + +      +L                        F N     
Sbjct: 253 KCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMP 312

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   K                           S H  R   A+   +       
Sbjct: 313 HNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKV 372

Query: 307 LMATYGWKTVDQAE-TYTKG 325
           +    G   V      Y + 
Sbjct: 373 IQEVMGHADVSTTMNIYAEA 392


>gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
 gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80]
          Length = 79

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 264 MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           MN T      +  A +AG+ K+   H +R   AT   + GA    +    G   V   + 
Sbjct: 1   MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 60

Query: 322 YTKGADR 328
           YT   DR
Sbjct: 61  YTHVLDR 67


>gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99]
 gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99]
          Length = 345

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 95/312 (30%), Gaps = 53/312 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVE-- 124
              E+         + ++  ++   F+ +                  +  + +R+     
Sbjct: 18  WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVY 77

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  H+ +S  +  ++   L  +      +  NP  ++ RPK      + +T + +    +
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 185 FWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGT 231
                           + R      L +GLR  +  RA +  ++ N        + K   
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNK 197

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------------------KMNATQ 268
              +      +++L      +E    +  K+                       ++    
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGT 257

Query: 269 FSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 323 TK--GADRIRLG 332
                AD  R  
Sbjct: 318 VDGAAADTRRAA 329


>gi|323187771|gb|EFZ73069.1| integrase [Escherichia coli RN587/1]
          Length = 317

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 17/280 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL   +  Y        +   + + + S    I RK  D     I+TK + + + +
Sbjct: 31  ADAITLHAWLDRYETILRERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAMLNT 90

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +   +SA    +++  +F+ A+ + +VA NP  +    K +    R    E +    
Sbjct: 91  YVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKPEVRRSRLTANEYVAIHH 150

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------- 236
           +        RLA +  + +G R  D C+     + +N   I+  KTG  + +        
Sbjct: 151 AAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDA 210

Query: 237 LPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGV 289
           L      +L       G +T   +   + ++    S +F      +G+       + H +
Sbjct: 211 LNISLADILQKCREASGSDTIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFHEL 270

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R  SA                 G K+   A  Y     R 
Sbjct: 271 RSLSA-RLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGRE 309


>gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 397

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 99/346 (28%), Gaps = 54/346 (15%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           KG+ +R         +   A + A        +         T L   +          +
Sbjct: 38  KGNKKRAEKMLIEARSAKEAELEARALERSTGKVSTDSILFTTFLLDWLE-----MIKKN 92

Query: 87  LAVNSRISFE-----SYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFL 137
           +   +  ++                     R+I  KHI+         R  + ++ I   
Sbjct: 93  VEETTYGAYSMGIKSKIIPYFEEHHPGLLLREIKPKHIQDYYTYELTVRGVSANTVIHRH 152

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++R   + A +   +  NP   +ERPK++      + +ED         +G    L   
Sbjct: 153 ANIRKALQHAFKLGLIDTNPADRIERPKKEKFVGSAY-EEDELNRLFEVVKGDPIELGVI 211

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------------ITVE 236
              + GLR S++       +     +I  + T T                       ++ 
Sbjct: 212 LGAFYGLRRSEAVGLKWDAIDFKKKTITIRHTVTQATIDGKSKIIQKDRTKTKASYRSLP 271

Query: 237 LPDGFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           L   F +LL                       +  ++N   + +     +  F     K 
Sbjct: 272 LVPPFEELLYRLKAEQELNRKLCGRSYCRQYTDYIYVNEIGELVKPGYITQHFPLVLEKN 331

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           G+ K   H +R   A++    G +  E+    G   +      YT 
Sbjct: 332 GMRKIRFHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 377


>gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 353

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 81/275 (29%), Gaps = 38/275 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + L+SE+  S   GSL+  ++ ++        +                   E  K T  
Sbjct: 100 EELLSEFLAS-QTGSLSDATKKNYRIALLSFFKFL-------------DKQNEDEKGTTY 145

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                L +   L                  + P    +       + +++ +      ++
Sbjct: 146 QFRIELKNWGGL------------GGRRGEKLPAHMYKEEITRFLKAIEETEFKPYAQAK 193

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RL  + +LY+G+R S++    ++ +      +     G            + +      
Sbjct: 194 NRLLIKMILYTGMRVSEALGLKIKDMVKEENYLICHIRGKGNKPRTAMIKYETIEADLQE 253

Query: 252 KETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
              +        F +   + +     S         AG+ K    AH +R   AT+    
Sbjct: 254 WMEYRSSDSALLFQSRTGKPLTQAYVSYVMDKMLFHAGIRKEKNGAHMLRHTFATLLYQK 313

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                 +    G   ++ +  YT   D+ RL I  
Sbjct: 314 NRDLILVQEALGHADLNTSRIYTH-FDKERLKIAA 347


>gi|118580552|ref|YP_901802.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
 gi|118503262|gb|ABK99744.1| phage integrase family protein [Pelobacter propionicus DSM 2379]
          Length = 389

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 23/334 (6%)

Query: 8   PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST------------ 55
           P F  +   R  K  +  R+  G+ +R                +                
Sbjct: 31  PRFAVRVSPRGRKTFFVMRRVKGKLVRATVGTFPEMNVDTARKMAAEMLVSMTAGVNPNI 90

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
            ++      + K   L  +   Y  S    G +  +++ ++ S F ++  K  +    +I
Sbjct: 91  ERKRERAQQKDKSRLLSAVFDSYLASGGKDGDIKASTKAAYRSAFRRL-EKWQELKIDEI 149

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            ++ +     S  +     +A   +  +R L K+A  +   A +   + E P+R+     
Sbjct: 150 ESEMVEQLHVSIVKDCGGYAANHSIGLLRALMKFAKVEGNPAADVAWAKETPRREAMPPE 209

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTG 230
                     +     GS         L++G+R S++       +        I+  KTG
Sbjct: 210 AIPGFLKALDQLKGDNGSDLFRVL---LFTGMRKSEAMGLRWIDIDLENKSLHIEETKTG 266

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             + + +      +L        + ++     ++        F  +    GV    H +R
Sbjct: 267 PPLNIPISGHLAAILEKRKERISSPWVFPSNSRVGHLTNDQQFCRELAALGVRVYPHLLR 326

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           K   TI+A        +    G    D     YT
Sbjct: 327 KTFTTIAASL-IPGAMVDCLTGHVPQDVTGRHYT 359


>gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14]
 gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14]
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 89/290 (30%), Gaps = 29/290 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 RSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTINSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   +    E    RL
Sbjct: 181 LCWLSRLMFRAVSKRIIRCNPFENAKYEKEEKKIRFLQKSDVMKLMAMRMNDKETELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  SD      +H+Q      ++  K ++   +  +       + +     
Sbjct: 241 MFVFSCFTGLAISDMENLEYKHIQTAAVGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQ 300

Query: 251 GKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
            ++                   +  + +             G+    S H  R    T+S
Sbjct: 301 KEQERSEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  D+     ++  R+ +   + +
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDKK--ISEDMDRLIAKQSAKE 408


>gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 324

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 86/300 (28%), Gaps = 37/300 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGV 123
           +    E+       S +V++  S+   +  ++R   +             I+   +R+ +
Sbjct: 2   RAFFQEWL--VEQRSASVHTIRSYRDTWRLLLRFIAERKGGGVARVALADISADEVRAFL 59

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  T  +    L ++R  F +   +    +  C  V     K E        + 
Sbjct: 60  HHTEHGRGSTIGTRNCRLAAIRSFFSFVADRNPEYVAQCAEVLTVPLKREPTSAPCYLEP 119

Query: 180 Q-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTG 230
                   Q       G +      FL  SG R  ++       ++ +         K  
Sbjct: 120 AEVEAILAQPDRSTVAGMRDHALLSFLYNSGARIQEALDLCPDAIRFDAPHCARLNGKGR 179

Query: 231 TIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----- 280
                 L    + L+            E  F+N   + + A+       A   +A     
Sbjct: 180 KERICPLWPETVTLIEKLLERQPRAPDERIFVNRYGKPLGASGVRFKLAAYVDEAAKAVP 239

Query: 281 ---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
                + + H  R  +A     AG     + +  G  ++D    Y +   +  R  ++  
Sbjct: 240 SLRSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQV 299


>gi|257866266|ref|ZP_05645919.1| integrase [Enterococcus casseliflavus EC30]
 gi|257873218|ref|ZP_05652871.1| integrase [Enterococcus casseliflavus EC10]
 gi|257800224|gb|EEV29252.1| integrase [Enterococcus casseliflavus EC30]
 gi|257807382|gb|EEV36204.1| integrase [Enterococcus casseliflavus EC10]
          Length = 389

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 113/387 (29%), Gaps = 59/387 (15%)

Query: 13  KERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +   + G  ++ F+      +  G+ +R       T   A +          +  +    
Sbjct: 6   QYVKKDGSKLWKFQSYLGVDEITGKEVRTTRRGFKTKKEAQLELNKIKLDFEKNGSLKNN 65

Query: 67  KPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
              T  K L   + +  H  ++   ++     +F+  I+ + G+    KIT    +  + 
Sbjct: 66  NKITYFKQLYEVWYEQHH-KNIKETTKQRISIHFNNHILIEFGNLKIDKITPLFCQRVLN 124

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +  S  Q       +F + +    + +NP      PK              +    
Sbjct: 125 KWAESLKSYPQLKIYTSKVFDFGILLGILTVNPMERTITPKISKTAQNESHSYYTKDELK 184

Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
            +       +  +    F  L ++G+R  ++       +     +I   KT         
Sbjct: 185 QFFVRLETLKDDRSFAFFRLLAFTGIRKGEAMALTWGDVDFKNKTISINKTLAELKSGKP 244

Query: 233 -----------ITVELPDGFMKLLAMT-----------------------PIGKETFFIN 258
                        VE+ +  + +L+                               +  N
Sbjct: 245 VIQDVKTSSSNRVVEVDNQTLAILSNWKKKVLQDKLSLGLRDDNFDTSVVFCNSVYYNQN 304

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               K  A    +  K K     +    H  RK  A++  ++G +  ++    G K+   
Sbjct: 305 QYLYKSYANNVLLRLKRKFPDQKI-IKVHDFRKTHASLLFESGVSIKDVSNRLGHKSTKI 363

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVD 344
            E  Y K     +   +++++ +  + 
Sbjct: 364 TEDIYVKVTPTKK--KESAQKFAEYMA 388


>gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 91/365 (24%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|227877412|ref|ZP_03995480.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
 gi|227862916|gb|EEJ70367.1| possible bacteriophage integrase [Lactobacillus crispatus JV-V01]
          Length = 382

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 47/375 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-------I 61
           + K + + GK+ Y F+   G                 +Y  A    T  +E         
Sbjct: 9   IYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKEEGPSKFTHK 68

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR 120
              ++   T++ +   + +      +  ++  + +S +   I ++ G      I   H++
Sbjct: 69  KEQKENRKTVQEVYEIWLEVYRA-DVRGSTLRTRKSNWKNNIEKEFGGVYIDGIDINHLQ 127

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
           S       T  +    L  +  + K+A+ +++   +P   +  PK+     +        
Sbjct: 128 SFATKLAETHINYRSILNLLHRVIKYAILRDWCDRDPFDKIVMPKKTKAKSKHPANNFYS 187

Query: 180 -----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
                   +       +  + F  +   G R  ++     +++      I  Q + +   
Sbjct: 188 LSELKTFLECAKKYKEKYYVYFMTVGNLGCRPGEALALKWKNIDFKNKEIFIQHSISTDE 247

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------I 271
                            V L D    +L            N+     +   F        
Sbjct: 248 NGNKIYGPTKTPASVRKVPLSDQLAIVLKEYKEETIYKKGNDFIFHKDNGDFYERSAPDH 307

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQAE-TYTK--G 325
           W         + + + HG R   AT+  +    A   ++    G K       TY+    
Sbjct: 308 WITTLYNNYPLRRITPHGFRHTLATLLNNGKNNANIKDIQYLLGHKKASTTMDTYSHFTK 367

Query: 326 ADRIRLGIKNSRRIS 340
            +   +  ++  ++ 
Sbjct: 368 ENEEHVA-ESINKLD 381


>gi|170719035|ref|YP_001784192.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168827164|gb|ACA32535.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 351

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 97/323 (30%), Gaps = 21/323 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            RT+ G          G+RIR             Y   L   T K + +N   K     +
Sbjct: 5   RRTKDGPWWVDITTPSGKRIRRSAGTTVKKEAQHYHDQLKAETWKIDRLN--EKPEYIFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESR 126
             +  Y +SA    L   S  + + +      K        +TT+ I      R+   ++
Sbjct: 63  EALLLYVRSAE--GLKDTS--TKKRHAKYWREKFQGRVLSSLTTQEILNHIPTRNMNTNK 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             T S+  +++ S+  +   A +   V   P L       +      W  ++  +     
Sbjct: 119 PLTNSTKNKYIQSILRILNLAHQAGLVDKVPHLPK---NAEPPIRVRWITKEQAKDLLAK 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
                 R    F L +G R ++        +                    ++ L D  +
Sbjct: 176 LNSDWMRAICAFALMTGARRTEILTMTWDKIDFVRKVAIVTNDVAKSGKARSLLLSDEAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISADAG 301
            LL         +     +           F A A K   ++   H +R   A+    AG
Sbjct: 236 LLLKSLRGKHAKYVFVGRENNKLNDINRKAFNAAARKCFLLDFHFHDLRHTWASWHVQAG 295

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    GW+T++  + Y  
Sbjct: 296 TPLFTLKELGGWETLEMVKKYAH 318


>gi|288922739|ref|ZP_06416910.1| integrase family protein [Frankia sp. EUN1f]
 gi|288345916|gb|EFC80274.1| integrase family protein [Frankia sp. EUN1f]
          Length = 409

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 110/380 (28%), Gaps = 58/380 (15%)

Query: 14  ERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +G   + FR         G+R         T   A   A+  S  + E        
Sbjct: 6   YKRTNG---WEFRHDIDPDPLTGKRRTTSRGGFKTKTEA-SRAMRDSITQFEEGKRVAPS 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI------- 119
             T++   +E+  +     +A  +   + +Y    ++   G    + +T + +       
Sbjct: 62  RRTVEEFTAEWLAAVRPA-VAKGTWAKYRNYLTLYVVPVIGPTPLQDLTARRLDLLYGHL 120

Query: 120 -------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                  + G + +   P++      ++      AV+  Y+  NP     RP+       
Sbjct: 121 LDKGRLRQRGGQGQGLAPATVAVVHQTLSRALGDAVKWGYLRRNPAEDAHRPRVGRRAPT 180

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------------- 216
            WT E ++ F     +  +    +  L+ +G+R                           
Sbjct: 181 VWTPEQVRAFLDHIRDD-RLYAMYLLLVTTGVRRGTLAGLRRADVDLELATVSPITTRVV 239

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMN 265
           +       + +       + L       L       E             F   D   ++
Sbjct: 240 IDGKADDGEQKTVNAYRPLSLDPLTRDALRAYVAVWEENRRTFGHTTDRLFCWPDGTAIH 299

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
               + WF+  A   G+     H VR   AT +  +G     +    G  +V      Y+
Sbjct: 300 PDTITDWFQGHARAVGLPVIRLHDVRHSYATAALKSGVHPKVVSERLGHASVAFTLSFYS 359

Query: 324 KGADRIRLGIKNSRRISSVV 343
                  +    + +I+ V+
Sbjct: 360 HVIPG--MDKDAADQIAGVI 377


>gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae]
          Length = 300

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 19/275 (6%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFD--QIIRKSGDFDYRKITTKH 118
            ++    L  LI  +  S        ++R S   + S      +  +     +     K 
Sbjct: 12  EKEDRRKLIELIDTWYNSHGVTIDDGDTRKSAMIYASDCMGLPLATEFTAKLFSSYREKR 71

Query: 119 I----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
           I    R      K +P +    L   R +F    R  E+   NP  S+   K +   +  
Sbjct: 72  ISGKLRRTERLDKVSPRTMNLELAYFRAMFNELKRLGEWKHENPVESIRPFKTEEAEMSF 131

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              +++          S   L       L +G R S++      ++     +    K   
Sbjct: 132 LDHDEINLLLKECVNSSNKHLLTVVKICLSTGARWSEAESLRGCNVSKFRITYTNTKGNR 191

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
             TV + +    L+A        F           + F    K         + +H +R 
Sbjct: 192 NRTVPISEELYNLIAEKKTIGALFSSC-------YSAFRTALKRTKIVLPDGQMSHVLRH 244

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     L    G   +     Y   A
Sbjct: 245 TFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFA 279


>gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 375

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 83/267 (31%), Gaps = 10/267 (3%)

Query: 66  KKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   ++ +L+  Y + S    ++   +R       + I R       + +T +++ +  +
Sbjct: 97  KSKGSVNFLL--YMEQSIKQENIREGTRKHKICTLEAIRRFGQIKTTKDLTRENLVAFDQ 154

Query: 125 SRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +    S      +  + R+  K    +  + ++P    +  + K +   P ++ ++++
Sbjct: 155 WLRDGTRSDVSINNYHKNFRIYTKRLATENVIDVDPYDLAKFKRGKCKEREPLSETELKK 214

Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            ++   EG     R  F F  Y+GL   D                               
Sbjct: 215 LRTIKLEGKLDKVRDLFVFAAYTGLAYCDVQSFSFDT--MTELQGTLYYIDGSRLKTGSK 272

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
            F  +L       + +     +         +     A K   N + H  R   AT++  
Sbjct: 273 FFTPILKPAMEVLKKYDFKLPRISNQKANDYLHLIQAAMKLNKNLTFHIARHSFATLALA 332

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
                  +    G + +   + Y K  
Sbjct: 333 HDVPIENVARMLGHQNIRTTQIYAKVL 359


>gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 73/263 (27%), Gaps = 16/263 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             +  ++      +++ N+  ++                  I+   +        + P +
Sbjct: 17  EALDAFQNYLLRQNMSSNTITAYMYGVKHFYSCYDQLSPDNISLYKVSLMD---HYQPQT 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++    K+   ++Y      +  +         R  ++ D +  K    E  Q 
Sbjct: 74  VNIRIRALNCFLKFLGIRDYKIRAIRIQQKC-----YLDRVISQADYEYLKRRLWEDGQY 128

Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
                  F+  +G+R S+     V+ +      I ++                 +     
Sbjct: 129 TFYFIIRFITATGVRVSELVMFEVRDVYQGYKDIYSKGNKMRRIYIPSSLQKNAIHWLEA 188

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATA 304
                   F+++    ++ +      K  A +  ++      H  R   A    + G   
Sbjct: 189 EGRHSGPLFLSHLGCCISISGIRAQLKTYACRYNLDPRVVYPHSFRHRFAKNFIENGGDI 248

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             L    G  +++    Y +   
Sbjct: 249 AFLSNLLGHDSIESTRIYLRRTS 271


>gi|110636130|ref|YP_676338.1| phage integrase [Mesorhizobium sp. BNC1]
 gi|110287114|gb|ABG65173.1| phage integrase [Chelativorans sp. BNC1]
          Length = 451

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 94/371 (25%), Gaps = 46/371 (12%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           P         GK  Y   +R     R   I L     +        A  G   + E  + 
Sbjct: 27  PGFGLRVFASGKRSYLIQYRAAGRTRRFTIGLHGIWTAENARQEAKAQLGRVARGENPSE 86

Query: 64  PR---KKPTTLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDY 111
            R    K  T+K L + Y    +               +           II   G    
Sbjct: 87  ERQLDHKAITVKELCTLYLNDMNAGLIMGKGGRPKKPTTIVTDTGRINRHIIPLLGARRV 146

Query: 112 RKITTKHIRS--------------GVESRKHTP------SSAIQFLTSMRVLFKWAVRQE 151
           + +    +                  +  +          +A + ++ +  +  +AV   
Sbjct: 147 KDLAKADVNKLLKDVMAGKTRVSVKTDKLRGKAIVRGGAGTAARTVSLLGGILTYAVDAG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-----EFLLYSGLRC 206
            +  NP   +++PK      R    E               + A        +  +G R 
Sbjct: 207 IIDRNPAHGIKKPKDNVRKRRLSDAEYRILGVMLREAAEDEKYAMTVEIIRQIAMTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           S+        +  +   ++   +    +       +         K T        + + 
Sbjct: 267 SEIISLTWNEVDTDASCLRLTDSKEGASTRPIGLPVIEFLEAQKKKATATYVFPGTRSDD 326

Query: 267 TQFS---IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             F      +K     + +   + H +R   A+I+ D G T   + A  G         Y
Sbjct: 327 GAFGSFPNHWKQMFKDSPLAGVTPHVLRHSFASIANDLGFTEVSIAALVGHSKGTVTSKY 386

Query: 323 TKGADRIRLGI 333
               D   +  
Sbjct: 387 IHTLDTALIMA 397


>gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 441

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 86/321 (26%), Gaps = 31/321 (9%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRI 93
                 +T       A      + +   +   +  +      E Y   A       +   
Sbjct: 88  KKGTGPTTIKEERAIAEILKKKEEQAKAAKANESISFGEYFKETYYPIAQTSKKKRSYEQ 147

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------------------KHTPSSA 133
               + + +    G+   + I   H+    ++                       +P   
Sbjct: 148 ELSHFNNWLNPVIGNMRLKDIRPMHLERVKQNLLSAQAMSRNREPKKGPVKKQARSPRMI 207

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                + R  + +A R   V+       V+ PK + + +R  T E+  Q  +   E SQ 
Sbjct: 208 QYVFATGRQCWNYARRDGLVSNEWPGKDVKLPKVENQRMRFLTDEEGDQLLAGLKERSQQ 267

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPI 250
                   L SGLR  +        +  +          G    V L D  + +L   P 
Sbjct: 268 LHDICLLSLDSGLRAYEIFSLSWNRVDLDQKLVKVFDSKGKDRVVYLTDRTVNMLRGLPR 327

Query: 251 GK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGAT 303
                      ++ K  +  F     +     GV         H +R   A+     G  
Sbjct: 328 DNGLVFKSRTGEQIKEISNSFHREVDSLGWNDGVKSHKDRLVFHSLRHSYASRLVARGVD 387

Query: 304 AHELMATYGWKTVDQAETYTK 324
            + +    G   +   + Y+ 
Sbjct: 388 LYVVGQLMGHSDLTMTKRYSH 408


>gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18]
 gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18]
          Length = 431

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 84/290 (28%), Gaps = 29/290 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 KSRAEGTYLNLYYSDKNLRDFIENKGVQDISIVTITESLFEEYRFFLKKRGLKASTVNTN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV    +  N   + +  K + +    +      +        E    RL
Sbjct: 181 LCWLSRLMFRAVSSRIIRCNSFENAKYEKEEKKIRFLQKGDVMKLMAMTMNDRESELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI 250
            F F  ++G+  +D      +H+Q      K  +     T            + +    +
Sbjct: 241 MFVFSCFTGMAIADMENLEYRHIQTAADGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCL 300

Query: 251 GKETFF-----------INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            ++               +   ++ + +             G+ +    H  R    T+S
Sbjct: 301 EEQKGNEEQQTVKEKGKKHIFPRECSRSVIDGRLSIVGKACGIRQRLSYHVARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  D      ++  R+ +   + D
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDRLIAKQSAKD 408


>gi|237785808|ref|YP_002906513.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758720|gb|ACR17970.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 361

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 104/348 (29%), Gaps = 38/348 (10%)

Query: 11  VTKERTRHG-KIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + +  T +G +    Y+   +G+R +      + +     +A             P    
Sbjct: 4   IKQYNTANGPRWRVQYYDPANGKRQKRG--FATKWQAENWAAENTVDLTTGQWRDPAGAN 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T++ L   + +      L  ++     S     ++   G      +    I++ V +  
Sbjct: 62  ITVETLSKTWWRGRQH--LKPSTLDRDASRLHGVVLPMWGKRKIGTLRKSEIQAWVSASP 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + SS       +  +   AV   Y+  NP   V+ P +        T   +++      
Sbjct: 120 LSGSSIRHAHNLLAQILDVAVDDNYLKSNPARGVKLPPKGKPVKVYLTPTQLERLAHHAG 179

Query: 188 EGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQK---------------TGT 231
                +    ++L + GLR  +     V+ +      ++  +               T  
Sbjct: 180 ----DKAVVVWVLGTVGLRWGELVGLKVEDVDELHSRLRINRSVIYIKGKPQETLPKTHE 235

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAG------ 281
             TV +    M+++     G+                       WF A   KA       
Sbjct: 236 RRTVSVSLPVMRMIHEQAAGRLPSAWLFPHTDGGPLKRADGTKGWFAAAVKKAQAEDPSF 295

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADR 328
              + HG+R  +A +   AGA    +    G  +     +TY    + 
Sbjct: 296 PRITPHGLRHVAAGLLVSAGANVKVVQRQLGHASAVLTLDTYADLFEE 343


>gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
 gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus
           pumilus ATCC 7061]
          Length = 353

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 92/317 (29%), Gaps = 39/317 (12%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK- 105
                     +R    + R K  ++  +  +  ++    + A  +   +      ++   
Sbjct: 4   ERRKGKRVKAERTITKTSRGKTYSISVICEKICEAKLAENRAPETIDRYRRACRYLLEYA 63

Query: 106 -----------------------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
                                        +    K  +   ++   +P S   ++ ++R 
Sbjct: 64  RMIGLDDDIRDIDVDFARGFVAYLLHERVKFDGHKFKKDEHKTPGMSPKSVNDYIKTLRT 123

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEF 198
           LF++A  +    +NP    +      E +   + +++++           G +  +   F
Sbjct: 124 LFRFAQHEGSALLNPFDDTKLVSDPEEMVNILSPDELRRLLSAPDQRTFVGFRDYVIMTF 183

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---------LLAMTP 249
           L+ S  R  +      +++     ++                  +         L+    
Sbjct: 184 LVDSMARIGEILSLTKENVDYASSTVYFSAWDVKTRQGRFVPLERKTMNLIKELLIENED 243

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307
                 F++N  +++    F       A + G+      H  R   AT+  + G     L
Sbjct: 244 FESPFVFLSNYGEQLETNHFRKQLNRYAEQVGITKKVHPHLFRHTGATMYLENGGDIRHL 303

Query: 308 MATYGWKTVDQAETYTK 324
            A  G + +   + YT 
Sbjct: 304 QAMLGHRDMRMVKRYTH 320


>gi|323517745|gb|ADX92126.1| hypothetical protein ABTW07_1697 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 319

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 109/315 (34%), Gaps = 24/315 (7%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R+G+I    R            +      A+           +          TL+  I
Sbjct: 6   KRNGRITATVRIKPHPAKS-KTFNTKKEAKAWADETELQLKNEKEKIFTH---ITLRQAI 61

Query: 76  SEYRKS---AHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT-- 129
            EYR +      G +   +R       +Q I+    D    ++  + + +  E R  +  
Sbjct: 62  EEYRDTVSIHKKGGVKEVTR------LNQFIKIMNVDVSLSEVNKEFLVNFREYRLESVV 115

Query: 130 PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P++  + L  +  +F W + ++ +++ +P   V+ PK      +  +  +++        
Sbjct: 116 PATVRRELLMLSGMFSWCIDKKLWLSSSPMDGVKLPKASNHREKVISDFEIETLLP--FL 173

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             + +  F   L +G+R S+ C    + +  +   +  + T      E+P   + ++A+ 
Sbjct: 174 NDELKSIFLIALETGMRLSEICLLEWERIFLDKQYLVLKTTKNGRPREVP---LNVIAVD 230

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                    +           S  F     KAG+ + + H  R  +AT  A       +L
Sbjct: 231 IFIGIGVKKSGRVFSYEPKYASADFMKARIKAGLYDFTFHDTRHTAATRIAPK-LPLLDL 289

Query: 308 MATYGWKTVDQAETY 322
              +GW    +A  Y
Sbjct: 290 CKMFGWTDPKRAMVY 304


>gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ]
          Length = 317

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 79/293 (26%), Gaps = 43/293 (14%)

Query: 88  AVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRK---------HTPSSAI 134
           ++++R S+E            +     Y  +   HI       +           P +  
Sbjct: 25  SLHTRRSYEIDIRHFFSWAHEQFNISSYGDLERDHIIKYRNFLQEAGGRDGSPCAPKTVA 84

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQP- 192
           + L ++     + V +  +  NP  S++RP+R  +      +   +++        +   
Sbjct: 85  RKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALSGTQVRELLEAIPGDTPAG 144

Query: 193 ---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL---- 245
              R        +GLR S+      +  +        +  G    +         +    
Sbjct: 145 ILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVLEFIGKGGKIGQKVLHPDAVELLD 204

Query: 246 -----------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286
                             +           N  + +N    +      A K G+    + 
Sbjct: 205 LYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLNPRTINEIIDYYAKKIGLNFKVTP 264

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H  R        + G   + +       +V   + Y K   R RL      ++
Sbjct: 265 HSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEYDKR--RKRLSDSPIFKL 315


>gi|300310209|ref|YP_003774301.1| site-specific phage recombinase/integrase [Herbaspirillum
           seropedicae SmR1]
 gi|300072994|gb|ADJ62393.1| site-specific phage recombinase/integrase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 325

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 96/341 (28%), Gaps = 34/341 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKP 68
           + +++ R   +  + R+  G+RIR+      T+  +   A     S       N+  +  
Sbjct: 3   IYRDKERGNFVFEFDRRLKGKRIRVRKYLPKTWNKSQADAFDREESARLYAVANNVERPD 62

Query: 69  TTLKWLISEYRKSA---------HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
             +   +  Y +               LA         +  ++ +    +    +     
Sbjct: 63  HLIDDAVDIYIEERVPLLKSGANIARELAQMYFAYKGRHMSELAQVCKSY----MAKAGR 118

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                      ++    +  +    ++A +   ++ +               R +     
Sbjct: 119 ADEDNDSPLAAATLRNRIRYLTSACRYAWKHHGMSEHDPAERVIAPLVRNERRRYITRKE 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  S+    R A     YSG+R S+  RA   H    +   K  +           
Sbjct: 179 MLQLCLASKHRPTRAAVRIAFYSGMRMSEILRAERTHDAFVLDETKNGEPR--------- 229

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                                    + ++ S  F+      G++    H +R  +A+   
Sbjct: 230 --------IVPMHRKIRCCAKVPLPDQSRISKHFRDARKLVGLDWLHFHDLRHSAASSMI 281

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
           + G   + + A  G KT    + Y   A   ++  I+   +
Sbjct: 282 NEGVDLYTVGAVLGHKTASSTKRYAHLATSSLKSAIERIGK 322


>gi|297160045|gb|ADI09757.1| putative integrase [Streptomyces bingchenggensis BCW-1]
          Length = 428

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 108/386 (27%), Gaps = 60/386 (15%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            P+ R   +  K+   HG++    R       R         +   +  L      +   
Sbjct: 11  QPNGRSSIYFGKDGKWHGRVTVGVRDDGTPDRRHVERKTRAEVTTAVRELEKQRDAKTVK 70

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +    T+K  ++ + ++    ++  N+ + +       +I   G     ++  +HI 
Sbjct: 71  KPGKA--WTVKAWLTHWVENVAPLAVNDNTMVGYGVAVRKHLIPGLGAHRLDRLKPEHIE 128

Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +           P++A Q   + R     AVR+ ++  NP    + PK     + P++ +
Sbjct: 129 AFYAKTQANGSKPATAHQVHRTFRTALNEAVRRGHLGKNPVQLAKAPKTGEYEVEPYSVQ 188

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           ++Q+      +  +    +   L  GLR  +      + +      +  +++        
Sbjct: 189 EVQRLLKAADQH-RNSARWAVALALGLRQGEVLGLKWEDVDLEGGFLVVRRSRHRPQYAH 247

Query: 238 PD-----------------------------------------------------GFMKL 244
                                                                     + 
Sbjct: 248 GCVEPCGRKAAGYCPQRRRTNPELSTTKSRAGRRAVGLPDQLVDLLRAHLKAQEVERTEA 307

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                     F   + +   +   ++ W    A     +   H  R  +AT+    G   
Sbjct: 308 GKCWEDNDLVFPDEHGRSPSHRRDWTEWKALLAEAKVRDGRLHDARHTAATVLLILGVPE 367

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             +M   GW T   A  Y    D +R
Sbjct: 368 RAVMGLMGWSTTAMAARYQHMVDAVR 393


>gi|300766643|ref|ZP_07076560.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495743|gb|EFK30894.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 393

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/374 (11%), Positives = 107/374 (28%), Gaps = 47/374 (12%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + +  + ++ YY   G+ + I             +      +        +PR      
Sbjct: 6   KRGKKWNARVSYYDDLGNRKFINQGGFRTKREAQEWA---NQNEIDVSNGINPRLGKQLF 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
                ++ ++     LA +SR+ ++     +          +IT    +  +        
Sbjct: 63  TDYFLKWYQTYKEPILAKSSRLRYQYTLGIVNNYFAGKRLDEITRTDYQKFLNDYANPVG 122

Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER------PKRKTEGIRPWTKED 178
            +P S          ++   ++A+    +  N     +       PK          ++ 
Sbjct: 123 RSPRSLSSSEKVNVQIKSAVQYAIDDGIIKRNFTAHTKISGRPEKPKEMKYLDGKDAEKL 182

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
            +  +S  +     +L     L +G R S+           +  +++  KT         
Sbjct: 183 TRALESDLTFAHLTKLMALVSLQTGARYSEVAGLTWDCFSFDFKTLRINKTWDTLQRNGF 242

Query: 231 -------TIITVELPDGFMKLLAMTPIGKET-------------FFINNDKQKMNATQFS 270
                  +   +++ D    +L      +                FIN   +  + T  +
Sbjct: 243 ADTKNEQSKRLIKITDHLADILKSFHALQIIKLEELGIDNPLDLIFINQYGRVPDNTSAN 302

Query: 271 IWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                   + G  + + HG+R   A+     G + + +    G          Y+    R
Sbjct: 303 QTLHRVLKRIGSKDITFHGLRHTHASYLIYKGVSIYYISERLGHSNYSTTIRVYSHLL-R 361

Query: 329 IRLGIKNSRRISSV 342
                + S+ + ++
Sbjct: 362 EMEKKETSKALVAL 375


>gi|289551321|ref|YP_003472225.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180853|gb|ADC88098.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 406

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG I Y F +          RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGNIQYRFYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTP 64

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 65  TTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 124

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPC-------LSVERPKRKTEGI 171
             +            +  L+  + +F++  R   +              ++         
Sbjct: 125 VFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 184

Query: 172 RPW----------TKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
             +             +M+  K       +  L      EF   +G+R  +      + +
Sbjct: 185 NKYLELNEIQSIIKDINMKAQKMHSCIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDI 244

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 245 DFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 304

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G 
Sbjct: 305 WNDGYLNRNFIFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 365 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 474

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGF 241
               +   +     E L  SGLR S++    V     +        K        L D  
Sbjct: 253 LHAEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTS 312

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           +  L      +           F+     +++  Q +    A   +AG+ +S   HG+R 
Sbjct: 313 VDALREWLHFRHHLASEGERALFVGARGDRLDRRQATRIIDALCRRAGLPQSVSPHGLRH 372

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +AGA    +    G   +   + YT 
Sbjct: 373 SFATHLLEAGADLRSVQELLGHARLATTQRYTH 405



 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE---S 125
           +  +          +  +  ++ +   Q          G      +T +H++  +     
Sbjct: 46  LELFLAHVELEKGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPEDVTRRHVQRYLAELHR 105

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +   SS  + L+++R  F++ +R   V  +P  +V  P+++    R   
Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 155


>gi|225021017|ref|ZP_03710209.1| hypothetical protein CORMATOL_01029 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946157|gb|EEG27366.1| hypothetical protein CORMATOL_01029 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 385

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 112/384 (29%), Gaps = 52/384 (13%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREY 60
            P  RL  F T  R   GK    +    G++   P+P        A++          E+
Sbjct: 3   APKKRL--FGTISRLSSGKYRARYTGPDGKKYSGPHPFFTKDDAGAWLRQEQKLIEFDEW 60

Query: 61  I------NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD----- 108
                   +      T+   + ++        L  ++ +++ +    +I+  +G      
Sbjct: 61  QPPHLRYRTKEDDARTVGDWLRQWLD-LQEKRLKPSTMVNYRTTLDRRILTITGKAGRLR 119

Query: 109 -FDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                ++T + +    ++      + P +   ++  +R   + AV ++ +  NP    E 
Sbjct: 120 TIPLVRLTRRDVIDWWDALTIQFGYQPYNRAAYVR-LRTAIQAAVDRDLIPTNPVDVKEA 178

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
             +     +   +    Q     +     ++      + G+R  +      + +      
Sbjct: 179 RHKPKPARKELPEAATMQKI-VDNLNPTHKIIGILTFFHGMRIGEVLGLRRKDITITGDT 237

Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----- 269
                   + +T                + + +     +    +      +   F     
Sbjct: 238 ILIHIRGNAYRTSDGMKYQDTPKTSASHRTIPVFKKFHQDIIEHLATIGDSPDAFICTTG 297

Query: 270 ----------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                             T+AG+    S H  R +  T   + G T   +    G   + 
Sbjct: 298 SGKIILDTSYRSVLHRAKTRAGITERISPHYGRVWLITTLVEQGMTIPAIGELLGQVDLK 357

Query: 318 Q-AETYTKGADRIRLGIKNSRRIS 340
              E Y + ++  R   +  +R+S
Sbjct: 358 TITEIYMRTSNARR--QEALQRVS 379


>gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
 gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136]
          Length = 379

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 100/364 (27%), Gaps = 39/364 (10%)

Query: 10  FVTKERTRHGKIIYYFR------KGHGRRIRLPYP-------HESTFIPAYM-SALTGST 55
           ++ K++   G++  Y             R    Y           +F       ++    
Sbjct: 6   YLRKKKISKGRVSLYLDFYPPILIPGTNRTTRRYFLNVHLPEKPKSFAEREHVKSIMQKM 65

Query: 56  PKREYINSPRKKPTTLK---WLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF- 109
                    +           ++   ++       SL  N    +   +      + +  
Sbjct: 66  EIFRLRVLEQIINEKFDFYDKIVEKTDFLDYFKNESLKHN--KKWIYVYQHFAAFTNNKC 123

Query: 110 DYRKITTKHIRSGV-----------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            +  I     +              +S+K   +SA  + ++ R + K A ++  +  N  
Sbjct: 124 TFADINVALCQRFRSYLLNTAKLRDDSKKLKQNSAAGYFSTFRGMLKEAYKKRMLKENIN 183

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             ++R   +   I   T+ ++    +        R A  F   +G R SD      + ++
Sbjct: 184 DFLDRIPEEETEINYLTEHELGLIINNECPIPVLRKAIIFACITGFRRSDILALKWEDIK 243

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                         +        + +                   +     +   K    
Sbjct: 244 ELPKGGWCV--FKRMQKTKNMANVPIGDDLMEVIGPRGEGLVFNGLTTYMLTYPMKRWFK 301

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             G+ K    H  R   AT+S   G     +    G K       YTK  + ++   + +
Sbjct: 302 SIGIKKDLHFHCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKVVNPLK--EQAA 359

Query: 337 RRIS 340
           +R+S
Sbjct: 360 KRLS 363


>gi|134294392|ref|YP_001118127.1| phage integrase family protein [Burkholderia vietnamiensis G4]
 gi|134137549|gb|ABO53292.1| phage integrase family protein [Burkholderia vietnamiensis G4]
          Length = 352

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 93/344 (27%), Gaps = 42/344 (12%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           T+ G + +    R+    +              +  A+ G   +  +++S   + TT   
Sbjct: 5   TKRGDLQWQAKVRRKGYPQQS-KTFDTRADAEKWARAIEGEMDRGRFVSSAEAESTTFTE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
            +  Y +             S                   +    I    +     H+P+
Sbjct: 64  ALDRYEREIASSKRGAVQEKSIIRMLRD--SWLAKRSLAGVRRADIAKLRDEWCETHSPA 121

Query: 132 SAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           + ++ L  +  LF  A ++  +    NP   V +P  K E  R  +  +    +   ++ 
Sbjct: 122 TVVRRLAVISHLFTIARKEWGLESLSNPVELVRKPTVKNERTRRISNIEPDTHRGTSTDE 181

Query: 190 SQPRLAFEFLLY----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                A     +          + +R S+    G   +       +   T      ++P 
Sbjct: 182 LAYVKAASASAFLPALIDIAVETAMRRSELISLGPAQVDLTKRVARLAITKNGTARDVPL 241

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG------------------ 281
               +       +           + A   +  F+    +A                   
Sbjct: 242 SSKAI---AVFEELNKDGRELFFPLRADAVTRAFERAVARARRTYEKDCASNGVPPDPKF 298

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            ++   H +R  + +  A+     HEL    G +       Y  
Sbjct: 299 LIDLCFHDLRHEATSRLAEK-FPLHELAKITGHRDTKMLMRYYH 341


>gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601]
 gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601]
          Length = 332

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 92/308 (29%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+   R+       ++ +  ++  +  + I   G    R++    + + +      R  +
Sbjct: 18  LLESLRQRIRVLHYSIRTEQAYVDWARRFILFHGKRHPRELGAPDVTAFLTHLAVERNVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q   ++  L+K  ++Q+   ++  +S  +P          T+ ++++        
Sbjct: 78  ASTQNQAKAAILFLYKEVLQQDLPWLDEVVSARKP---RRLPVVLTQREVRELLLHLQ-- 132

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------------------TQ 227
               L    L  +G+R  ++ R  V+ ++     +                        +
Sbjct: 133 GTQWLVSSLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLIAPLRE 192

Query: 228 KTGTIITVELPD--------GFMKLLAMTPIGKETFFINNDKQK---------------- 263
           +      +   D             LA+      T +                       
Sbjct: 193 QMERARMLHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVERRH 252

Query: 264 -MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            M            A +AG++K  + H +R   AT    AG     +    G K V    
Sbjct: 253 HMLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTM 312

Query: 321 TYTKGADR 328
            YT   ++
Sbjct: 313 IYTHVLNK 320


>gi|328553997|gb|AEB24489.1| integrase family protein [Bacillus amyloliquefaciens TA208]
          Length = 409

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 104/362 (28%), Gaps = 59/362 (16%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPK----REYINSPRKKPTTLKWLISEYRKS 81
           R    + IR+  P            L     +     E       +  T +  + ++ + 
Sbjct: 26  RDRRKKTIRIEDPKLLKTKRKLQEYLEDQLHRFRIEVEAGEYIAPEKATFESFVEKWVEK 85

Query: 82  AHW----GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS----- 131
             +       +  + + + ++    I+   G     KI + HI   ++      +     
Sbjct: 86  KLFNKNGKPYSYTTSVKYSNHLKNHILPALGHKKIDKIKSLHIVDFIDDLSKDGARKDGK 145

Query: 132 -------SAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPW-TKEDMQQF 182
                  +       ++ LFK A  +   +  +P   +  P+ + + +    + E  +  
Sbjct: 146 PGGLGDQTIKDIFKILQALFKTATEEWKLIKDDPIEGLSSPEAENKEMNFLESDEAAECI 205

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------------------HLQNNIFSI 224
           K  +    + RL +   L  GLR  ++                         +       
Sbjct: 206 KVLYEIDIKWRLYYLAALIGGLRRGEALACEWHLDVDWDKGGIYVNRSISKTINGEPHVK 265

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNATQ 268
             +   +   V++PD +M  LA                      +  F +   +    T 
Sbjct: 266 SPKSKSSQRFVKMPDFYMNELAKFYRIWKKEKLLLGDVWEGGEHQYVFHSGKGKPYYYTT 325

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            +  +     K G+ +   H +R     +  +AG +   +    G  +     + Y    
Sbjct: 326 PTAKWTKIKKKYGLKDVRLHDLRHTMVALLMEAGESLSAIQRRAGHASARTTSDIYGHVT 385

Query: 327 DR 328
           ++
Sbjct: 386 EK 387


>gi|313157598|gb|EFR57014.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 405

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 88/267 (32%), Gaps = 25/267 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130
            ++Y +   + +    ++  +            D     ++ ++I         + +   
Sbjct: 134 CNKYHRLLRYMT--EYTKQQYRKD---------DLPLDMVSYEYIDGLNTFMQTAHQCRN 182

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + A+  L  ++    +A+R E++  NP    +    KT    P TKE++    S      
Sbjct: 183 NGAVNLLCCLKNFILFAIRNEWIEKNPFQYYKMKIDKTNVKVPLTKEELDILISKEMPNE 242

Query: 191 QP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-----DGFM 242
           +    R  F F   +GL  +D+     +H+  +             T  +         +
Sbjct: 243 RLECIRDVFCFCALTGLAFTDADNLQKRHITTDDSGTTWIHKPREKTSVISRVPLLPYPL 302

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
           K+L       E           +  + + + K   T   ++K  + H  R   AT++ + 
Sbjct: 303 KILQKYEHNPELQLKGKLLPIPSNQKMNSYLKEIGTICNIHKNLTTHCARHTFATLAIEY 362

Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327
           G     +    G    +    Y K ++
Sbjct: 363 GMPIDIIAKILGHTNTNMTRHYAKISE 389


>gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 27/289 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVE---S 125
           L   +  Y           +S  S++   +  +R  G       +I  + +    +    
Sbjct: 6   LAEGMRMYIARLREQG-RYSSAKSYQDALNSFLRFCGQEMILYTRIDREMLLRYQDYLRD 64

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQ 180
           R+ + ++   ++  +R ++  A+       +  L          K+K        +  M 
Sbjct: 65  RECSWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFLGVKSKQKKALPAESLRLLMT 124

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +        R      L+ G+   D        ++N +     QKTGT + VE+   
Sbjct: 125 APLAAPELRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPV 184

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGVN--K 284
             +LLA                                    F+   K  A   GV    
Sbjct: 185 ARELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNRSLKELANACGVTEIV 244

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +++ +R   AT   + G     +    G +++   + Y K     R+  
Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSA 293


>gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679]
 gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679]
          Length = 273

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 76/267 (28%), Gaps = 8/267 (2%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +  S      +  +  +       +    G      +    +     S++  P
Sbjct: 10  WAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPL-DVGGNGLVGYFASKEWKP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F+W    +    +P   +   +R     RP   + +    S      
Sbjct: 69  ETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSK--AND 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +L        GLR S+        + +++        G      L      L  +   
Sbjct: 127 EEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGKNDKQRLVPLPDDLADLITA 186

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
             +  F    +  + A+                 + H +R   AT + +A      +   
Sbjct: 187 HHDYLFPGRWQGHVEASYIGKHLSRLLD----GWTTHSLRHRYATRAYEATHDLLLVSKL 242

Query: 311 YGWKTVDQAETYTKGAD-RIRLGIKNS 336
            G  +V+  + Y    D R+R G++  
Sbjct: 243 LGHASVETTQRYVAMPDERLRAGLEAV 269


>gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVES 125
            TL+ L   +         +  +   +       +            +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T+  +Q   +    G + R   E L  +G+R ++     +  +      +  ++   
Sbjct: 139 EAETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKG 198

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----------WFKAKATKA 280
                +P G   L+ +    K+       +        S                +A ++
Sbjct: 199 GRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 281 GVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G +       H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603]
 gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603]
          Length = 407

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 102/399 (25%), Gaps = 73/399 (18%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG + Y + +          RR+   L    + +   A          K      
Sbjct: 5   KFINKHGDVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLNDKTP 64

Query: 64  PRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ +           +     S  + +      +     IT  +++ 
Sbjct: 65  TTLKSLTFHVACDEWLEHYKNHSGSKATTIKEKISNTNTVKNAIDKEVLINNITHTYLQD 124

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176
            + +    H+       +  +R +FK+  +   +     L      +K +          
Sbjct: 125 IINNWASIHSKGHVQSLVIIIRSVFKYVFKYYDLQDISVLDKIDIPKKAKTRDELQAKRN 184

Query: 177 ------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                    S+ R         +F + +G+R  +      +++ 
Sbjct: 185 NYLEDSEVKELLNCFDYLIKHKKHSSRKRNYQMVKAIVQFQVANGMRIGELLAIKRENIN 244

Query: 219 NNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                                       T+ + +  T+ L    + LL    +  +    
Sbjct: 245 YEDKTLDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILENKKENQ 304

Query: 258 NNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            NDK               ++  + +   K     + + KS   H +R    +  A  G 
Sbjct: 305 WNDKFIDRGYIFTNTAGSPIDLNKINNIIKEATEISSIKKSVTTHTLRHTHISTLAQLGI 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
               +    G        E YT   D+  +      ++ 
Sbjct: 365 NLKAIQERVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLE 401


>gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
 gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131]
          Length = 322

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 26/278 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH--- 128
             +Y         A ++R +      + +R     G  +   +T  H+R  + S+ +   
Sbjct: 25  FDDYL--LQARGFARSTRETSIRIVGRFLRDKFNDGAINLSTLTPAHVRDFLASQANVYR 82

Query: 129 TPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           TP S    ++S+R  F+W    + +   +   L+     ++    +  + ++++Q     
Sbjct: 83  TPVSFSLVVSSLRGYFRWRIMQKDDLYVLIGALANPANWQQASLPKSLSTDEIEQLLNSL 142

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---- 238
                 G +        L  GLR  +  R  +  +     +I  ++T       +P    
Sbjct: 143 GQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTKGRRDDVMPLPVT 202

Query: 239 --DGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290
             +     L                    ++ ++ +  SI  +   T+AG+  + AH +R
Sbjct: 203 TGNAIAAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTRAGLQYTSAHLLR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A      GA+  ++      ++++    Y K   R
Sbjct: 263 HTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSR 300


>gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 78/304 (25%), Gaps = 43/304 (14%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR 120
              L+  +         + +  +  S+   F  ++  +          F   ++    I 
Sbjct: 11  FASLLQRFFIERLMQQQNASARTVESYRDTFRMLLTYAQRVLHKPPEKFTLDELDVTLIT 70

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + ++     R ++  S    L+++R  + +   +   A++    +     K         
Sbjct: 71  AFLDHLETARSNSIRSRNARLSAIRTFYHYVTMRCPQALHLAQQILSIPTKRFERPLLGF 130

Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
              ++              G + RL    L  +G R S+     V  +            
Sbjct: 131 LSREEVHALLGAPDPDTWFGQRDRLLLMLLYNTGARVSELTGMRVADVTLAATPWVRLHG 190

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKA-- 280
           K      V L       +      +                M     +  F      A  
Sbjct: 191 KGRKQRAVPLWRETAAAIRTWIRDQGLQPEQSLLPSRHGGPMTRANVAERFSLALMAAAK 250

Query: 281 ------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                   + + H +R   AT    AG    E+    G ++      Y +         +
Sbjct: 251 TCPSLLKRHITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYVE-------ADQ 303

Query: 335 NSRR 338
             +R
Sbjct: 304 AMKR 307


>gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 343

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 29/269 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141
              +  +   +        R   +     I   HI   + S     + P++    L  ++
Sbjct: 56  RRGSPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIK 114

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             F +  +   + +NP   V+ PK        R    E++Q+        +  R      
Sbjct: 115 SFFGYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCR 174

Query: 200 LY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L       +    S       + ++   ++    K      + +P      L +      
Sbjct: 175 LLFAAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALY 234

Query: 254 TFFINND----------------KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATI 296
           +                       + +               A G   S H +R   AT 
Sbjct: 235 SIEPYQPAPGLDAVPLFPNRRVLTRPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATH 294

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
           S  AGAT  ++    G +++     Y   
Sbjct: 295 SRLAGATLEQIRVALGHESIQTTIRYEHS 323


>gi|325276068|ref|ZP_08141880.1| Phage integrase [Pseudomonas sp. TJI-51]
 gi|324098790|gb|EGB96824.1| Phage integrase [Pseudomonas sp. TJI-51]
          Length = 397

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 28/289 (9%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
           +P     T+   ++ +  +     ++ ++   +    + +++   G         K +R 
Sbjct: 75  APETSQETVGGFLTRWLAAKQ-KHISSSTFEGYRKIVELRLVPALGHHLVLDFKRKLVRD 133

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            ++  +    +     + +R     AV +E + +NP       +++             +
Sbjct: 134 WLDGLQVGNKTLSNIQSCLRSALNDAVDEELLDVNPLAGWTYTRKEAPPRDDDVDPFSPE 193

Query: 182 FKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
            +         Q R   +F L++GLR S+        +      +   +  T        
Sbjct: 194 EQQAILAALTGQARNMMQFALWTGLRTSELVALDWGDVDWVRGEVMISRAMTQAAGGVAE 253

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKA 277
                    +V+L    ++ L               +      ++          +    
Sbjct: 254 VTKTAAGRRSVKLLGPALEALTAQKAHTFLADAEVFQNPRTLERWAGDQPIRKTMWHPAM 313

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            KAGV  +  +  R   A++   AG     +    G          Y +
Sbjct: 314 KKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAKQMGHTDWTMIARVYGR 362


>gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 371

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/357 (10%), Positives = 91/357 (25%), Gaps = 52/357 (14%)

Query: 10  FVTKERTRHGKIIYYFR-----------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           +V K R +   + Y  R               ++ +            Y   +  +    
Sbjct: 3   YVYK-RDKKWAVRYSKRATVWDPKLQKEVSKLKQKQKGGFKTKVEAQQYGIKMEAA---- 57

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
                   K         ++ K     S+   +++++   F  I +  G    + I    
Sbjct: 58  ALSGVDVVKNPAFADYCDKWIKIYKLPSVRPATKLTYNKRFKYIKQFFGTTKIKDIDRTM 117

Query: 119 IRSGVESRKHTPSSAIQFLTSM---RVLF---------KWAVRQEYVAINPCLSVERPKR 166
            +  +       +++     ++     +F         +    Q  +  N   + +    
Sbjct: 118 YQKFINWYGEDHATSSTHKMNILVKSCVFAAIDDGLISRNFTNQITIHGNDDKTKKIEYL 177

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               I+    E     +  ++            LY+G R  +        +     +I  
Sbjct: 178 NEHEIKALVSELKTNLQPRYTSN----YLILAGLYTGARLGELSALHWSDIDFKHKTISI 233

Query: 227 QKTGTI--------------ITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFS 270
            K+                   + + D  + +++          F  +  K    A   +
Sbjct: 234 TKSWNQDRKEMGKPKTKNSVRKIPVNDEILNIISQLKANHFDFVFATSRTKMPPTACAVN 293

Query: 271 IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              K   +KAG+ K     H +R              + +    G   +    + Y 
Sbjct: 294 DALKRNLSKAGITKQGYHFHSLRHTHVAYLISHHVDIYSISRRLGHAKISTTLDIYA 350


>gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS]
          Length = 344

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/330 (7%), Positives = 69/330 (20%), Gaps = 69/330 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---------------------DYRK 113
           I  Y +       + N+  ++                                       
Sbjct: 4   IERYLRYLTDIERSPNTIKAYAHDLKDWFTFLAGRGPDWTAVQLEDVGAFVSWLRLPMAL 63

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             +  +           ++  + L+++   + +A R          + +    +      
Sbjct: 64  RQSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPF 123

Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208
                 +  +S                            +  + R     L  +G+R  +
Sbjct: 124 LHHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSCDRLRDRFLLAVLYDTGMRVGE 183

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTP----- 249
           +       +      I  ++                  ++ EL   +   L         
Sbjct: 184 ALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYLHDEYGDLDS 243

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                  +                 +    + G++   H +R  +AT     G     + 
Sbjct: 244 DYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFDPHWLRHTAATRMLRDGIGLEVVA 303

Query: 309 ATYGWKTVDQA-ETYTK--GADRIRLGIKN 335
              G   V     TY      D  ++  + 
Sbjct: 304 KLLGHANVTTTAATYGHLTVEDARKVLQQA 333


>gi|28379726|ref|NP_786618.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
 gi|28272567|emb|CAD65493.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum WCFS1]
          Length = 388

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 118/380 (31%), Gaps = 53/380 (13%)

Query: 12  TKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            + +T+ G     F        G  +R+             + S +     K  +I +  
Sbjct: 11  KQYKTKSGAFWEAFTSVGKDTNGKAKRMHKRGFKTKKEAQLWTSNVQTDFTKNGFIAN-- 68

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T   L +++    +   +  ++ +  +  F   I+ + G    ++IT    +S V 
Sbjct: 69  -DNITFAELYTKWFNEDYKEQVKESTYMITDDIFRLHILPELGSQRVKRITVAQCQSIVH 127

Query: 125 SRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKE 177
              +    +  +F T    +F + VR E    NP      PK+KT+           ++ 
Sbjct: 128 KWLNQGFKTYRRFRTYAISVFDFGVRMELTTRNPMAKTSIPKQKTKPQAPHVDFYEKSEL 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NN 220
                 +   E  Q  + F  L ++GLR  ++       +                    
Sbjct: 188 LHFLDCASKHENPQAFMFFRLLAFTGLRRGEALALQWSDINFETNELTVNKTQAVGKRWR 247

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---------------NNDKQKMN 265
                 +   +  T+ L     + L    + +                    N   + M+
Sbjct: 248 TIIQTPKTNTSYRTIVLDPDTAQWLHKWKMTQARQCFELGFNANDPSQLVFTNQQNKLMS 307

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            +  + +  +   K G+     H  R    T++ +A A  +E+  T G   +    + Y 
Sbjct: 308 PSTVNYFNWSICKKYGLRHIKIHAFRHTFCTLAFEAHAGINEVSKTLGHADLKITEQIYL 367

Query: 324 KGADRIRLGIKNSRRISSVV 343
                 +   + + +++  +
Sbjct: 368 HVT--KKQKNETASKLARYM 385


>gi|85708225|ref|ZP_01039291.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
 gi|85689759|gb|EAQ29762.1| site-specific recombinase, phage integrase family protein
           [Erythrobacter sp. NAP1]
          Length = 392

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 96/339 (28%), Gaps = 26/339 (7%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---------LTGSTPKRE 59
           P   +     GK  +  ++  G + RL    ++  +   ++          +       E
Sbjct: 34  PGFGERIHPSGKKSFVLQRTMGGKQRLITIGDAAILTERIAKDVARRLILRIELGQNPAE 93

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITT 116
                +K PT + +L   +       +   ++      +      +          +I  
Sbjct: 94  EKQRGKKTPTYVSFL--RHYWEVAAPTWKPSTLEIHDIYRRT--HLEHAFAGKFIDEIGH 149

Query: 117 KHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                   S   +  P +A + +  ++ +F  A    Y+  +        + +   I  +
Sbjct: 150 ADAVRWHASLTRSAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNRGRKIERF 209

Query: 175 TKEDMQQFKSFWSEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             E+      +     +            L  +G R  +        +Q     +   KT
Sbjct: 210 LSENEMARLGYALARHRAAKPNEVAVISLLALTGCRRGEILNLTWGEVQGRKLKLTDSKT 269

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           G  +     +    +  +            D   ++      +++    +AG+ +   H 
Sbjct: 270 GPRVVWLGKEARAVIDRLPRKRPHECVFQFDVLPVS--AIEWFWRMLRVEAGIEDVRLHD 327

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +R   A+++A +  T   +    G         Y    D
Sbjct: 328 LRHNFASLAARSSETLPMIGRLLGHNNSSTTARYAHLDD 366


>gi|158340210|ref|YP_001521380.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158310451|gb|ABW32066.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 551

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 103/342 (30%), Gaps = 41/342 (11%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISEYRKSAHWGSLAV 89
             ++L     +    A           R    +    P  ++W ++ E+ ++    +L+ 
Sbjct: 10  PEVKLITFPTTEADQA-----PSPKSIRRGRPTQIPTPMDIRWPMVQEFLRN---SNLSP 61

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQFLTSM 140
           NS+  +E    + +     F +  +T +H+             E +  + +S    LT++
Sbjct: 62  NSQKLYERELKRFLG-WTHFRWSDLTLRHLGQYKVYLMELKVAEGKTLSKNSLNSALTAL 120

Query: 141 RVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL---A 195
           +  FKW  +        NP   V+  K      +  T E+M +     ++  Q +L   A
Sbjct: 121 KSFFKWLTQFHPELCPTNPTKGVKFEKVPLPPAQNLTPEEMTRVWDAITQREQTQLRDLA 180

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------------VELPDG 240
              LL   LR  +   A V      + SI   K                         D 
Sbjct: 181 LVQLLSHNLRAGEVVTANVGSFDGRLISITKTKNNQPRLVPLSTEGQQVVQEYLDWRKDQ 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
             + L+       +     + Q+++        +     A +     H  R  SAT    
Sbjct: 241 QGEALSAESPLILSHHQGWEGQRLSYHGVYFAVEDIGRLAELPDLHPHQFRHTSATEYLR 300

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            G          G         YT  A++    I    R   
Sbjct: 301 MGLDPAHARRLTGHTDERSFRRYTVAAEQE-AAITAFYRAEK 341


>gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
 gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707]
          Length = 348

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 91/338 (26%), Gaps = 52/338 (15%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIR 104
           A   A      +R    S      T       +        +A  +           +  
Sbjct: 2   ALGKAQAAEDSERIEPTSAEAARMTWGEWKPHWEA---GRRVAAGTAGRDRGRLAKHVDP 58

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSV 161
           K GD    KIT   I+  +   +    SA         +    + A     +  NP   V
Sbjct: 59  KWGDVKLNKITGHGIQVWLRELEDAGLSASSVQKCFHLLSSSLRAAEFARMIPSNPAKGV 118

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           + PK      R  T++++             RL  E L+ +GLR  ++     + +  + 
Sbjct: 119 KLPKGGKNVDRYLTRDEVADL--AGVLDDADRLVVELLVGTGLRLGEALGLHWESVDLSR 176

Query: 222 FS-------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------- 260
            +             +K  K+    TV +     +LL     G+      +         
Sbjct: 177 RTIHVARSWDPVGGSMKPPKSWQQRTVPISRSLAELLEKELRGRGPGSPPDVEYYREVRA 236

Query: 261 -----------KQKMNATQFSIWFKAKATKAGV-----------NKSAHGVRKFSATISA 298
                         +        +      A V               H +R   A+   
Sbjct: 237 RSGLVLPARRGHGPLGEKHLRSRWNDAFALASVVRTKRGQEPIAPARIHDLRHTYASWLV 296

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
             G + +EL    G ++V   E Y   A      ++ +
Sbjct: 297 QDGVSIYELKNLLGHESVKTTERYAHLAPTQWDAVRAA 334


>gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 349

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 96/341 (28%), Gaps = 39/341 (11%)

Query: 19  GKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           GK  +  R        +R                 A +        +N       T  ++
Sbjct: 10  GKWYFSIRYKDVYGNNKRKMQRGFSTK------REAKSAEAIFLNDVNEGYSDSKTFDYV 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              Y ++     L   ++   ++ +      K G     KIT    +   +      +S 
Sbjct: 64  FHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVAST 120

Query: 134 IQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               T          +A +   +  +P +S++   R     + +   +  + +    E  
Sbjct: 121 NSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEERIKDIEEQ 179

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             R  F  + Y+GLR  ++            + +  N     + +T            + 
Sbjct: 180 DYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIV 239

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGVNKSAHGVR 290
            L        T     +K+         +F             + K  KA  + + H +R
Sbjct: 240 PLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALR 299

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
              A+  A+ G     L +      + +   TY+    + +
Sbjct: 300 HSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7]
 gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 401

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 4/220 (1%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             + ++  + ++A  +    + +   A R+  +  N    ++         +  + E+++
Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +  +        R A  F   SGLR SD      +++Q              +  +    
Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGG-HYLDFKCVKTQRQTQ 270

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                    + +            N T      +    + G+ K  + H  R   A++  
Sbjct: 271 VPIGDDAYELIQPQTTDKYIFSGFNRTMTYRVMQDWIKECGIKKHITFHCFRHTYASLQL 330

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
           + G   + +      K V   + Y   AD   R      R
Sbjct: 331 ELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIR 370


>gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
 gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552]
          Length = 312

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 88/298 (29%), Gaps = 36/298 (12%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130
            E+       S+  +S + +E+  +  +I+  G +  ++I    I +         K++ 
Sbjct: 10  REWM-YLKKLSVKYSSYVKYENVVNVHLIQYFGKYCLQQINDDIIINYFQTKINEEKYSL 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+       ++ + ++A  +  +       ++  K+K +     + + M   K  ++   
Sbjct: 69  STLSTIRYVLKSILEYAQSKYAIKCPNFNFIKLAKKKNDCKVLTSDQIMLLGKYCFNHFE 128

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------------ 232
              LA    LY GLR  +      + +      I+ ++T                     
Sbjct: 129 PISLAILLSLYGGLRIGEFSGLKWKDIDFENDLIRVERTVERLKAPANSMTKTQLMLMDP 188

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                     I V + +   K      I  E F   N K   +       F         
Sbjct: 189 KTATSKRIIPIPVFVMEYVKKYYQHHAIDDEHFIYTNSKNISDPRSIQYSFHRICKLYNF 248

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRR 338
             + H +R   AT           L    G   V      Y   + D  +  I    +
Sbjct: 249 KSNFHSLRHTYATNCVMNNIDIKSLSEMLGHSKVSTTLNLYVHSSLDFKKTQINKIEK 306


>gi|163941385|ref|YP_001646269.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
 gi|163863582|gb|ABY44641.1| integrase family protein [Bacillus weihenstephanensis KBAB4]
          Length = 381

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 102/350 (29%), Gaps = 43/350 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
              F+  + ++ +               A      K          PT+LK  + ++ K 
Sbjct: 14  RVRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEITPTSLKHYLRDWLKL 73

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL--- 137
               ++  N+ I  E      II    + + +++     +  + S      S        
Sbjct: 74  FKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINSLTDQGYSKRTVQIIH 133

Query: 138 ----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +M+        +        +S +  K +       +++     K+ +       
Sbjct: 134 GTMNNAMKKAVNLKKIENNPCEEVVISNKNNKEREGLKYMRSEDITLFLKTSYKYNYIYY 193

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIITV 235
           + F+ LL +G+R  ++     + +     +I                    +   +  T+
Sbjct: 194 IFFKALLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKEELFGDTKTFTSKRTI 253

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQFSIWFKAKATKA 280
            +P   +  L      +    +       +                +     F     KA
Sbjct: 254 MIPKSLVDELLEHKKWQNANKLVLQDAYEHELDLVFSRVDGNFLPKSTLFNAFSRILKKA 313

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
            + +   H +R   A +  ++GA+   +    G K+++     Y+  +D+
Sbjct: 314 NLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 363


>gi|294624933|ref|ZP_06703587.1| shufflon-specific recombinase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600770|gb|EFF44853.1| shufflon-specific recombinase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 360

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 99/347 (28%), Gaps = 40/347 (11%)

Query: 16  TRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           T+ G        R                    +  AL        +++    + TTL+ 
Sbjct: 5   TKRGDLQWRARVRIKGFPEQS-RTFTYREDAEKWARALERELETSGFVDRREAEKTTLRQ 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           ++  Y+        +       +                 +T+K I +  + R  + T  
Sbjct: 64  VLERYKLEVTPAKKSAA-IEEVKIDVILKDATLPGLKMAAVTSKEIAAWRDRRLKQVTGG 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  + +  +  +F  A R+  + +   +    RP++     R  + E+ +   +   EG 
Sbjct: 123 TVNREIDVLSTVFNHAKREWGINVENPIPHVRRPEKAKARDRRLSAEEERYLFAALEEGE 182

Query: 191 Q---------PRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +          R  +   L      + +R  +      +H+     +     T       
Sbjct: 183 RRADGTLGSGARNPWLGPLVKLAIETAMRRGELLALRWEHVDLKRRTAHLPDTKNGDPRT 242

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--------------- 281
           +P     +  +  + ++      +   + A      F     +A                
Sbjct: 243 VPLSTTAVALLKTLHEKREEGTENVFPITAAALQKGFWRATERAKALYADDCATAGKKPA 302

Query: 282 ----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               ++   H  R  +A+  AD  +   EL A  G + +   + Y  
Sbjct: 303 KGFLMDVHFHDTRHEAASRLADKLSNVLELSAVTGHRDLRMLKRYYH 349


>gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638]
 gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638]
          Length = 349

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 81/318 (25%), Gaps = 36/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRR+R  +  +   +      +   + K    ++P +   TL  +   +    H  SL
Sbjct: 20  RTGRRVRKMFATKGEALAFERYTMDQVSNKPWLGDAPDR--RTLSEVAELWYN-LHGRSL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAI 134
           A      ++     I+   G+     ++ K        R                P +  
Sbjct: 77  AAG-EKVYKK-LKLIVAALGNPPAHSLSGKDFAHYRSKRLSGEIYFSEKWKKGAKPVTVN 134

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              + +  +F    R     +   L   R     E    W   +  +         +  L
Sbjct: 135 LEQSFLSGMFSELARLGEWNLPNPLDNLRKYAVAEKEMAWLTHEQIKTLLAACSSGRADL 194

Query: 195 AFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                  L +G R +++ +     +  N  +    K     +V +       L      +
Sbjct: 195 PMVVKVCLSTGARWNEAEKLTRSQVSPNKITFIRTKGKKNRSVPISKELHDELVALEGDR 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
                               F A      +   A    H +R   A     +G     L 
Sbjct: 255 LFSECYF------------RFMAAINTTDIKLPAGQLTHVLRHTFAAHFMMSGGNILVLQ 302

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 303 RILGHSDIQMTMRYAHFA 320


>gi|150400384|ref|YP_001324151.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013087|gb|ABR55539.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 90/309 (29%), Gaps = 30/309 (9%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITT 116
                K+   LK  I +Y     +  +  ++     +     +     +          +
Sbjct: 13  KKEEIKETPKLKKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNFGYERLEKEPNDMENS 72

Query: 117 KHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWA-------VRQEYVAINPCLSVERPKR 166
             +R        RK + ++  ++   ++V +K          + E        S E    
Sbjct: 73  DFVRFFNYLENERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDRKRFSSFEIKHY 132

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSI 224
            + G        M+  +S  +   +  +   FL  +G R S++     G   L+   F +
Sbjct: 133 DSLGADILNLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKYGDSDLEKGEFRL 192

Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +  K      V      +  +             +  F     + +   + S  F+    
Sbjct: 193 RDTKGKEERIVTCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKRNRPSDVFRNAVK 252

Query: 279 KAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +               H +R   A    D G     +    G K+++    Y+   +R +
Sbjct: 253 ELKKKGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSHSKERQQ 312

Query: 331 LGIKNSRRI 339
             +   ++I
Sbjct: 313 KMLNQIKKI 321


>gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469]
 gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469]
          Length = 313

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 75/285 (26%), Gaps = 16/285 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
           K+  TL      + +      + + +  S+  YFD  I  + G      I  +HI+    
Sbjct: 36  KQNITLAEWFDTWMEQYKKNRIKIGTYTSYRKYFDCAIKERLGSRKIADIRGEHIQKLYN 95

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +    +  +  +    ++Q  + +               +R   +    +   
Sbjct: 96  ELAQEDYALSS-IKVVSAVLNGCMQQA-LFVEYAKDSYLYNLFAVMLRTGMRSGEIRGLK 153

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +     +  +         +          +       S +       I   L       
Sbjct: 154 YTDIDRKKNVIHVQRTLKYIEGQGYLEDTPKT----RTSKRDIPLTKDILELLEAQKRYW 209

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT---KAGVNK---SAHGVRKFSATISA 298
                      F N + + ++  +     +        AG      + H  R   AT + 
Sbjct: 210 GFKVTRLDSYLFCNENGEPLSRDRVQAEIERIIKQIHAAGHEFERITPHVFRHTFATRAI 269

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
           +AG     L    G  ++      Y+      +       +I++V
Sbjct: 270 EAGMQPQVLKTILGHSSLAMTMDLYSHVLPDTK--ADEMEKIANV 312


>gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 77/301 (25%), Gaps = 48/301 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129
           L+ + R        ++ +  ++ S+  + I  SG     ++    + + +         +
Sbjct: 18  LLDQVRDRLRVRHYSLRTEQAYLSWIRRFILASGRRHPAQMGQAEVEAFLTRLATDGQVS 77

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------------EGIRPW 174
             +  Q L ++  L++  +R E   +   +  +RP+R                 EG    
Sbjct: 78  AGTQNQALAALLFLYREVLRIELPWMENLVRAKRPRRIPVVLSREEVARLLAALEGPCWL 137

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
               +        E  + R+         +   D      + +       +  +      
Sbjct: 138 MASLLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERA 197

Query: 235 VELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQ---------------- 268
           + L    +            LA                                      
Sbjct: 198 LLLHAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSARQSRDPRSGRVGRHHVSEE 257

Query: 269 -FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +     AG+    + H +R   AT   +AG     +    G K V   + YT  
Sbjct: 258 VLQRAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317

Query: 326 A 326
            
Sbjct: 318 L 318


>gi|297625397|ref|YP_003687160.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921162|emb|CBL55709.1| Prophage LambdaBa04, site-specific recombinase, phage integrase
           family [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 429

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 111/400 (27%), Gaps = 74/400 (18%)

Query: 11  VTKERTRHGK-IIYYFRKG--------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           +   +T  GK   Y               ++        +    A +        ++E  
Sbjct: 36  IQSYQTAAGKRWRYQIWVPVDPEQPDLGEKKFSRGGFSTAADADAALQDALKRRDQQEKF 95

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                   TL      + +      LA ++   +       +  + G +   K+T   I 
Sbjct: 96  GGKVP---TLGVYADAWVEGLK---LADSTIAGYNKIIRNHLRPQLGHYPLDKLTPTRIA 149

Query: 121 SGVESR----------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRK 167
                           K  P SA     +   +  +   A+   ++A NP          
Sbjct: 150 RHYRDLEQHGRKDEQDKGGPLSANTVHKAHVVLGAILDAAIEDGHIATNPAKRKAAKAPT 209

Query: 168 TEGIR-------PWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQ 218
           T  +R        WT + +  F ++  +  Q  L   +     +G+R S++       + 
Sbjct: 210 TSQMRAEKPELVTWTADQLAAFLAWDRDELQDELFALWWVIANTGMRRSEALALKWSDVN 269

Query: 219 N--------------NIFSIKTQKTGTIITVELPDGFMKLLAMTP-----------IGKE 253
                          +    KT KTG    +++    +K +A                  
Sbjct: 270 IKTSQVSIRRAINTEDWTKTKTTKTGNARVIDVDAATLKAIASYKVARAELSFELARADA 329

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-H-------GVRKFSATISADAGATAH 305
             F ++D Q  +    +  +  +   A   K   H       G+R   ATI  + G    
Sbjct: 330 YIFGDDDGQPRSPDAMTSRWDRRLKWAVKVKRFEHLPRVTLKGLRHTHATILMELGVPPK 389

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            +    G  T+      Y+       +      R +S + 
Sbjct: 390 VVQERLGHSTITTTMNIYSHVTPT--MQKNAVDRFASRLA 427


>gi|228948404|ref|ZP_04110687.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811391|gb|EEM57729.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 392

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 112/380 (29%), Gaps = 44/380 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALT-GSTPKR 58
             +  P +       G  ++ FR  +    G+R         +   AY   L   ++   
Sbjct: 6   KTKKDPELYYYFNTKGVKLWCFRHRYYDSLGKRREKYKQGYKSENEAYRDLLEVKTSILN 65

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI--- 114
             +   +    T+   +  + ++       ++S    E+     +    G +   ++   
Sbjct: 66  GEVKQVKNSNLTISEWLDIWYETHK-NEWKISSCSQRENAIKYQMKPLLGKYKLAELDKS 124

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T K +      + + PS+   F    ++    AV  E +  N    +  P  +      +
Sbjct: 125 TYKRVYINELLKNYKPSTVQLFHRLFKIAINAAVDDELIPRNRFNKITIPNEEKTVENFF 184

Query: 175 TKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKT 229
           T E++ +F +     E          L ++GLR  ++     +++     +    +T+  
Sbjct: 185 TAEELNEFIAAAKKYENITNYSIILLLAFTGLRKGEALGLQWKNINFEEKTLTVERTRDN 244

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------------KMN 265
               T +  + F  +L    +  +        +                         + 
Sbjct: 245 KGTRTPKTKNSFRTILIDDTLINQLKAYRTWCKKTKLSFGLHLQDDDFIFISYQSGTPIT 304

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                  F+       + K + HG+R   AT+          +    G  T     + Y 
Sbjct: 305 DNPLMYSFQRILKHTTLKKITPHGLRHTHATLLISQRIPVKVIADRLG-NTPQMIFDIYG 363

Query: 324 KGADRIRLGIKNSRRISSVV 343
                  L  ++    S+ +
Sbjct: 364 HSF--KELEEESVAAFSTSL 381


>gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 329

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 104/312 (33%), Gaps = 39/312 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTK 117
            +   +   + +Y  +      + ++  ++      ++    +  G       ++ +   
Sbjct: 3   AQTGPVAEAVEQYLVARRAAKPSPHTVAAYRRDLRGVLGCVAQVMGVEPEQVEWQDLEAG 62

Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R+           SS ++  ++    F + V +  VA NP  +V RP+ +  G +P  
Sbjct: 63  VLRAAFAEFAGERAASSVVRAWSTWNGFFGFWVSEGVVAGNPMSAVPRPRVRPSGPKPLM 122

Query: 176 KEDMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ED  +            +      +        L +G+R ++     V+ +       +
Sbjct: 123 GEDTPERLLEALARGARKARDPWPERDLAVLALALLTGMRSAEMLSLRVESVGGRSGERR 182

Query: 226 TQKTGT---IITVELPDGFMKLLAMTPIGKETFF----------INNDKQKMNATQFSIW 272
            +  G       + +      LL    + +   F          ++N  + +        
Sbjct: 183 IRVVGKGGGERVLPIEVPLEALLEAYLVSRRERFGVVRGSDPLLVDNRGEGLRRGGLQYL 242

Query: 273 FKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +     AGV+         H +R   AT  A+ GA+  E+M   G  +V  ++ Y +  
Sbjct: 243 VQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVT 302

Query: 327 DRIRLGIKNSRR 338
            R +    +S R
Sbjct: 303 ARAQREAASSNR 314


>gi|227552779|ref|ZP_03982828.1| phage integrase [Enterococcus faecium TX1330]
 gi|227178103|gb|EEI59075.1| phage integrase [Enterococcus faecium TX1330]
          Length = 346

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 90/327 (27%), Gaps = 30/327 (9%)

Query: 17  RHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK        +R G  +++             +   +     + + +     + TT  
Sbjct: 6   KRGKSYRAQVSLYRYGEHKKLT-KTFATKKEAQLWSLEMELVKGEGKELA---HRTTTFA 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +        +   +  ++      I +   D   + +    ++  ++     H+ 
Sbjct: 62  DFFENWIYLVKVNDVKETTFQNYVRTLGIIRKLFQDIQLKDLNDIVVQKKIDEYAKTHSR 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187
            +  + L  ++   + A  + Y+A +    V+               T     +      
Sbjct: 122 KTTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGENPPKRNKALSITDFRKLRNYVLQH 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVE 236
              +  +     L +G+R  +      + L      ++            +       V 
Sbjct: 182 PEDEFNVLVLLALETGMRRGELLAIRPESLYEYGIEVRHSISPTSDDTSLKTQNAKRDVS 241

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
           +     +L+   P+ +  +  +    K +             K  +NK+  HG+R   A+
Sbjct: 242 INKEVYELVRRIPVKENGYIFSFGGFKQSEQ-----LTDLLEKLDINKTTFHGLRDTHAS 296

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
                      +    G   +   + Y
Sbjct: 297 FLFAQDIDIAYVSKRLGHINIQTTQNY 323


>gi|85713921|ref|ZP_01044910.1| probable integrase protein [Nitrobacter sp. Nb-311A]
 gi|85699047|gb|EAQ36915.1| probable integrase protein [Nitrobacter sp. Nb-311A]
          Length = 422

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 114/382 (29%), Gaps = 47/382 (12%)

Query: 9   PFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P       + G     + Y    G  RR+ +      T   A  +A        + ++  
Sbjct: 27  PGFGLRVKKSGAKSFLVQYRNANGRSRRLTVGRYGVLTVEEARRAAKISLADVLKGVDPA 86

Query: 65  RKKP-----TTLKWLISEYRK--------SAHWGSLAVNSRI-SFESYFDQIIRKSGDFD 110
             K       T++ L  EY          +    +   ++           I+   G   
Sbjct: 87  ENKKLDRGAITIETLCREYLDKAERGLILTRRGEAKRRSTIYTDKGRVERHIVPILGKRT 146

Query: 111 YRKITTKHIRSGVESRKHTPS-------------------SAIQFLTSMRVLFKWAVRQE 151
            + +TT  IR   +S     +                   +A + +  +  +  +AV + 
Sbjct: 147 VKDVTTADIRRFQQSVISGKTAADIKTKKRGRAIVTGGKGTAARTMGLLGGILSYAVNEG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRC 206
           Y   NP   + RPK +T   R          K        +   QP L    +  +G R 
Sbjct: 207 YRPDNPARGIIRPKDETREWRLDDAGYRALGKKLTAAEANAVNWQPILIMRVIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            +  R     +     +++   + T  ++         +      K              
Sbjct: 267 GEIERLLKTEIDFARSALRLGDSKTGKSIRPIGSAAIAVLKQACEKSKSKYVFSALTNEK 326

Query: 267 TQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++    KA A+  G      + HG+R   ++ + D G +   + A  G       E Y 
Sbjct: 327 KRYVGLPKALASIVGDAVPGLTPHGLRHSFSSTAEDLGFSLPTIKALLGHAGGSVTEGYI 386

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
              D   +    + RI+S +++
Sbjct: 387 HKIDTALVA--AADRIASHIET 406


>gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism]
          Length = 319

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 72/300 (24%), Gaps = 48/300 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ E R       LA+ +  ++  +  + I  +G    R++    +   +         A
Sbjct: 20  LLDEVRGRMRRLGLAIRTEKTYVDWIRRFIVANGKRHPREMGAVEVEWFLTELAVKGKVA 79

Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L     +     +    ++ R KR        T +++ +     S  +  
Sbjct: 80  ASTQNQALSALLFLYRKVLGQELPWMENIRRAKRPDRLPIVLTFDEVSRILGRMSGTTHL 139

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------------- 235
             +  +     L      R     L      ++  K G                      
Sbjct: 140 MASLLYGSGLRLMECVRLRVQDVDLLRREILVRHGKGGKDRRTVLPIMVAAAFQAHLIQI 199

Query: 236 -----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------- 269
                               L          +I        +                  
Sbjct: 200 RILHERDLQAGHGDVWLPSALERKYPNAAREWIWQYAFPSRSRSIDPRSGVERRHHVDEK 259

Query: 270 --SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +     AG++K  + H +R   AT   ++G+    +    G   V     YT  
Sbjct: 260 TLQRAVRIAVQAAGIDKPATCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319


>gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005]
 gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002]
 gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004]
 gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005]
          Length = 332

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 97/305 (31%), Gaps = 17/305 (5%)

Query: 27  KGHGRRIRLPYPHESTFI-------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
             +G   RL    E T          A+++A   S  K          P + +  I +Y 
Sbjct: 22  IKNGHHFRLRDADEITLAVGHLGVVEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYL 80

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLT 138
            + +       +    ++         G      +T +H+   +  ++H +P     + +
Sbjct: 81  LNLNAAGQRPATIRLRKTVLCAAAHGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRS 139

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++R  F WA   + V      S+ + +   +  RP   +  Q   +      +  L    
Sbjct: 140 TLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAK--ADRRIELMIRL 197

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              +GLR +++ +A    L +    +   K G    V + D    L+  TP G       
Sbjct: 198 AGEAGLRRAEAAQAHTGDLMDGGLLLVHGKDGKRRIVPISDYLAALIRDTPHGYLFPNGT 257

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                          K  +     + + H +R   AT +         +    G  ++  
Sbjct: 258 GGHL-----TAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVT 312

Query: 319 AETYT 323
            E YT
Sbjct: 313 TERYT 317


>gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 323

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 99/301 (32%), Gaps = 40/301 (13%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             + K    + L   + K      L +++  ++++ ++  I    G+     I+++ ++ 
Sbjct: 4   KTKSKDIKFEKLADLWLK-RERNFLKISTYSTYKNLYETHIKPVFGNKFIGNISSESLQQ 62

Query: 122 GVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +  +            +  +    +T +++   +A+R+  +             K   I
Sbjct: 63  FIFDKLKNGRLDGNGGLSRKTVKDIMTIIKISINYAIRENIIKEKSLKYKIPKTDKINEI 122

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             + +E+      + +     +     L  S GLR  + C    + +      +   KT 
Sbjct: 123 NTFNQEEQSLLFKYIASNLTSKSVGILLAMSIGLRIGELCGLKWKDIDLQNEILIVNKTL 182

Query: 231 TIITVELPDGFMKLLAM-------------------------TPIGKETFFINNDKQKMN 265
             I   +  G    + +                             K  +F++N+++ + 
Sbjct: 183 QRIYFRVKKGGKSEIIISVPKSKNSYRIIPLSRNLVNFLKILQIDDKSNYFLSNNEKYIE 242

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              +  ++     K  + K   H +R   AT + ++G     +    G  +V+   E YT
Sbjct: 243 PKTYRRYYYKILEKLKIRKLKFHSLRHTFATTAIESGIDYKTVSEILGHASVNTTLELYT 302

Query: 324 K 324
            
Sbjct: 303 H 303


>gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium
           intracellulare ATCC 13950]
          Length = 232

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 21/224 (9%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189
           ++  +  ++++    WAVR+  +  +P   ++ PK          ++      +    G 
Sbjct: 1   TTLARRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDALAAAKSGA 60

Query: 190 -------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241
                   + RL  E L  +G+R S+ C   +  +      ++   K     +V      
Sbjct: 61  QQGEPMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPA 120

Query: 242 MKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKSAHGV 289
            + L           +N D        A    I  +   T             +   HG+
Sbjct: 121 AEALDAWLADGRPALVNADSGPALLLGARGRRIDVRQARTVVHQTVAAVDGAPDMGPHGL 180

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           R  +AT   + GA    +    G  ++   + YT  A      +
Sbjct: 181 RHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAV 224


>gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 338

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 87/304 (28%), Gaps = 49/304 (16%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKH------ 118
           KK  T+   I +Y +  ++ +L++ +  S+        +    + D + IT  +      
Sbjct: 6   KKSKTIDDFIVDYLEFCNYKNLSLKTIKSYHQCLMLFSKYLEEEKDIKDITKVNKNIVEE 65

Query: 119 --------------------IRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYV 153
                               I++ +  R       + S+   +L +++    +      V
Sbjct: 66  YISFTKERGKYSYTSTIEGSIKANLHKRTDIGKEVSNSTLNNYLRNIKAFATYLEENNIV 125

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             +     +  K +       T  + Q              +       +  +G+R  ++
Sbjct: 126 KNSRIHECKFIKTERRNKEQLTDVEYQKLVKCLDCTKFHEFRDYTIINLIFDTGMRLGET 185

Query: 210 CRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  +     +I              V       KLL      K+T           
Sbjct: 186 LHLTANDVDLLRRTILIPADLTKGRKDRVVFFSMNMAKLLQRWLKFKDTMQETELLFPTQ 245

Query: 266 AT-------QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
            T        F   F+    K+ ++K  + HG+R   +     +G +   L    G  +V
Sbjct: 246 RTNGIISNPNFERNFRGYLKKSDIHKNITPHGLRNNFSRRFLLSGGSLMILSKILGHSSV 305

Query: 317 DQAE 320
              E
Sbjct: 306 KVTE 309


>gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 79/336 (23%), Gaps = 72/336 (21%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----- 127
              +         +  +  ++                D+R +  +H+   V   +     
Sbjct: 29  ADVFLAHLTAIERSPGTVRAYAFDLRDYFEFLAAHGIDWRAVRLEHLGRFVGWLRLPPTQ 88

Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          + S+  + L ++   +K+  R          +++    +      
Sbjct: 89  RTASVTSLSTMEAQCSASTINRKLAAVGSFYKFYHRHGVGCGELLSTMKAGGARGSWRPF 148

Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208
                    +                             +  + R   E L  +G+R  +
Sbjct: 149 LAHLGSAGDQHRRTIKLKTRRRLPRTLPEESVQLIVNACDRLRDRFLIELLAGTGMRIGE 208

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-------------------LAMTP 249
           +     + +      I+ +         +  G  ++                        
Sbjct: 209 ALGLRHEDIDAAGTLIRIRARRNSNGARVKGGQREIPVAASLIRLYTDYLVDEYGELDCD 268

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309
                 +  +    +     +        ++GV  + H +R   AT     G  A  +  
Sbjct: 269 YVFVNLWGGSVGTPLRYWNVTDLVSRLRARSGVEFTVHMLRHTYATDLLRRGVPAEVVQK 328

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
             G  +V     TY        L +++ RR+     
Sbjct: 329 LLGHASVTTTASTYAH------LEVEDLRRVLRDKG 358


>gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
 gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718]
          Length = 292

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 72/282 (25%), Gaps = 52/282 (18%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVLFKWAVRQEYVAI 155
            +  + I   G    +++ +  I + +         SA     ++  L         + +
Sbjct: 2   QWIKRFILFHGKRHPQEMGSAEIEAFLTHLAVAGKVSASTQNQALSALLFLYKEILSIDL 61

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                + R K+        T+ ++Q             L    L  +G+R  +  R  V+
Sbjct: 62  PWLNEIVRAKQPQRLPTVLTRTEVQAILVRM--SGTYGLMANLLYGTGMRLMECVRLRVK 119

Query: 216 HLQN------------------------------NIFSIKTQKTGTIITVELPDGFMKLL 245
            +                                ++   +T         +        L
Sbjct: 120 DVDFERGEILIRDGKGSKDRVTMLPESLAGPLQAHLLHRRTLFDDDSRLGKASVYLPDAL 179

Query: 246 AMTPIGKETFFINND-----------------KQKMNATQFSIWFKAKATKAGVNK--SA 286
                   T ++                    +  ++        K     +G+ K  + 
Sbjct: 180 ERKYPNAATDWVWQYIFSSGSFSIDPRSGTERRHHIDEKLLQRAMKKAVQASGITKLATP 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R   AT   D+G     +    G K V     YT   ++
Sbjct: 240 HTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281


>gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 363

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 76/306 (24%), Gaps = 39/306 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120
           L   I +Y           + ++  S+      ++R             D   +    I 
Sbjct: 9   LGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGIL 68

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +      + RK+  S+    L+++ V F +   +    +     V     K    R    
Sbjct: 69  AFLSHLEKERKNCVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKRARQRAMDY 128

Query: 177 EDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
            +  +             +GS+       +  +G R  +        LQ           
Sbjct: 129 LEYDEIDAILKAIDRTTPQGSRDYALLATMFNTGGRVQEIADLRACDLQLTKPFQVRLFG 188

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKA 280
           K        L      +L      +          F+N+  + +               A
Sbjct: 189 KGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYILAKCLGLA 248

Query: 281 GVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRL 331
             +           H VR  +A     +G     +    G  +      Y K   +  R 
Sbjct: 249 CADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQ 308

Query: 332 GIKNSR 337
            I   +
Sbjct: 309 AIAKVK 314


>gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
 gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1]
          Length = 361

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 87/334 (26%), Gaps = 81/334 (24%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKI------------ 114
             +++E+ +        + +S  ++     +++              +            
Sbjct: 11  AQVLAEFAEYLRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGR 70

Query: 115 ------------TTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                           IR+    +  R  + ++  + + S R    WA++  +++ +  L
Sbjct: 71  GFAAPELSRALSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGL 130

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKS----------------------------------- 184
            +  PK          +  + +  +                                   
Sbjct: 131 RLHSPKPDNSLPTVLNEAQVARLLNTARLQAYSLGVHQKASKSQTEIPDSIPGDSAVPYR 190

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243
               G +     E L  +G+R S+     ++ +  +  +I+    G              
Sbjct: 191 ANPVGLRDWALLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGI 250

Query: 244 LLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            L                      F+     +++              AGV     HG+R
Sbjct: 251 ALDEYLEQGRPVLVSPDRDAGEWVFLGVKGGRLDTRLVRGMLHRMTAVAGVPDLGPHGLR 310

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             +AT   + GA    +    G  ++   + YT 
Sbjct: 311 HTAATHLLNGGADLRCVQEILGHASLGTTQRYTH 344


>gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
 gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101]
          Length = 290

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 99/270 (36%), Gaps = 22/270 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI--RSGVESRK 127
           K L+S+Y           N+  ++ +     +    +      + +   I     ++   
Sbjct: 2   KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVYEKGLKVSEDSYPLISYVQHLKESH 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +PSS  + + S+R  + + V +E++   P L++++ + + +     T E++ +  +  +
Sbjct: 62  KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVEEINKIMNSTN 121

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242
               +G + +   E +  +G++ S+     ++ +  +   +  + +      + +     
Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKEAK 181

Query: 243 KLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           + +    + +E         F+N   + +         K  A  A +  + + +  R   
Sbjct: 182 ESIKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323
           A      GA A  +    G    +Q  TY 
Sbjct: 242 AVHLLQNGANAKVVQELLG----NQVMTYI 267


>gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 326

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 76/306 (24%), Gaps = 27/306 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                     A+       T  + ++        TLK ++  + K  H  SL    +  +
Sbjct: 3   KQFATKGEALAFERHTMEETESKPWLGESVD-RRTLKDVVELWFK-LHGKSLTAG-QHVY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRV 142
           +     ++   G+     +T+K      + R               +P +     + +  
Sbjct: 60  DKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSS 118

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLL 200
           +F    R    +    L   R     E    W   +         +   P LA      L
Sbjct: 119 VFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++       +     +    K     ++ +     + +               
Sbjct: 179 STGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ 238

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   F    +  +      +  H +R   A     +G     L    G   +    
Sbjct: 239 --------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTM 290

Query: 321 TYTKGA 326
            Y   A
Sbjct: 291 RYAHLA 296


>gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus]
          Length = 320

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
           ++       A  +  S+  +  + I         K++   +   +       K    +  
Sbjct: 10  KEHMLTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAIDEKVAVKTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++   +                 + +     T+++++  +       + +L
Sbjct: 70  LALNAISFLYRDFFKTPLSLDMRFQKS---LTEKKLPVVLTRDEVR--RFVQHIDPRYKL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGK 252
             + L  SGLR  +  R  +Q +  +  +++  +       TV L     + L       
Sbjct: 125 HIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNLA 184

Query: 253 ETFFINNDK----------------------------------------------QKMNA 266
             ++  +                                                  +N 
Sbjct: 185 RNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      K  A  A + K+   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 SAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTH 304

Query: 325 GADR 328
             +R
Sbjct: 305 VIER 308


>gi|331701911|ref|YP_004398870.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329129254|gb|AEB73807.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 377

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/346 (10%), Positives = 98/346 (28%), Gaps = 33/346 (9%)

Query: 17  RHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +HG    + YY+   +G+          T   A + A          ++   K P     
Sbjct: 6   KHGHGYQVRYYYYDANGQEHEKTKSGFRTKSAAKLFASQLEIDIHNGLDLVPKDPK-FAD 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
               +  +     +   ++  ++     +    GD   + I     ++ +    H+ +  
Sbjct: 65  YFDYFYHTYKEPKIENQTKNRYKITSRVLHNYFGDVTLKSIDRPQYQAFINFYGHSHAKD 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGS 190
           +  +  + +R   + A+  + +  +    V     K  +    +      +    + E  
Sbjct: 125 TVYKVNSLIRATVQNAILDDLIHKDFTQRVSLIYDKSRDKHVEYLNVAEIKRLIAYLENH 184

Query: 191 QPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
                    +      +G R  +        +  N  +I   K+                
Sbjct: 185 LNYHFTSTFMILTAVLTGARLGEIQALTWNDVNFNFKTISITKSWNSSEGGGFKDTKTAG 244

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK---S 285
               + + D  +K L +         I  ++ K   +++  +   ++     G+ K    
Sbjct: 245 SNRIIAVNDELLKSLKILKDHNNGELIFVNQYKSIPSSSAVNKKLRSILKDLGIQKQGFH 304

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
            H +R          G   + +    G   V    + Y+   D  +
Sbjct: 305 FHSLRHSHVAYLLSRGIDIYIISKRLGHADVSTTTKIYSYLMDEYK 350


>gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
 gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47]
          Length = 320

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 87/285 (30%), Gaps = 38/285 (13%)

Query: 91  SRISFESY---FDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLTSMR 141
           S+ S+       ++  R  G         K ++              +  +   +L++++
Sbjct: 35  SKDSYRCMKSKLNKFARFFGYKGLVDCDWKSMQPNHVTVFLTAQSWGSARTYNCYLSALK 94

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQFKSFWSEGSQPR 193
            +   A R + + ++    ++  K++     P         +   ++  ++      + R
Sbjct: 95  SVALNAWRNKQIDLDHFQRIKSLKQRRVFRAPSGRAISSEESASLIKSLEANSLRTVRNR 154

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGK 252
             F  +L  GLR ++ C   V+ +     S K          +  PD  + +L +    +
Sbjct: 155 AIFYLMLGCGLRRAEVCELKVKQVSLKSRSAKIIGKGNKERNIYFPDAVLDVLKIWFEFR 214

Query: 253 E----------------TFFINNDKQKMNATQFSIWFKAKA---TKAGVNKSAHGVRKFS 293
           +                     +    ++ +  +   K             + H +R+  
Sbjct: 215 QLNKNESDAGFVFGRIDNKQRLHLDIALDPSSVTRIIKKLVSETENLEGRLTPHDLRRTF 274

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           AT          E+    G  +V     Y +  +  +R+  +   
Sbjct: 275 ATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRMAAEKVE 319


>gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 86/306 (28%), Gaps = 40/306 (13%)

Query: 71  LKWLISEYRK--SAHWGSLAVNSRISFESYF-------DQIIRKSGDFDYRKITTKHIRS 121
            + L+S Y         S + N+  S+   F       + + +         +  K+I  
Sbjct: 6   FQQLLSSYFLKYIPERTSYSNNTIKSYRDTFILLFQYHEYLHKSLSKISLETMNCKYIED 65

Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   +     + SS  Q L ++   FK+  ++    I  C SV R K +   + P    
Sbjct: 66  FLVWLECEKHYSVSSVNQRLAAVHAFFKFVQKENPEYIEICTSVLRIKSQKVPVMPMNYF 125

Query: 178 DMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QK 228
            ++          +   EG +       L  SG R  +        ++N   +      K
Sbjct: 126 SVEAIKLLLSLPDTSKLEGRRELAILTLLYDSGARVQEIADLTFGDVRNVKPATVRLTGK 185

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATK 279
                 V +    + ++       +   +      +              +         
Sbjct: 186 GNKTRVVPIMPQSLSVINSYMDDCKKKTVILSTYPLFFNKKGEKLTRAGIAYILDKYVDL 245

Query: 280 A--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
           A            S H +R   +    + G     +    G  +V   E Y K   +  R
Sbjct: 246 ARSIRQDLFPNKVSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEIKR 305

Query: 331 LGIKNS 336
             I+  
Sbjct: 306 KAIEAV 311


>gi|291485264|dbj|BAI86339.1| hypothetical protein BSNT_04132 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 339

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/277 (8%), Positives = 70/277 (25%), Gaps = 23/277 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +   +    +          +   +  + +     +       IT   +   ++S   + 
Sbjct: 47  VSDALETITRQMKVSGNRRRTISDYVLHVEHFQSITNVNHVADITADTVYKWLDSMNVSN 106

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWS 187
            + +  L  ++          ++ I    ++     +        ++             
Sbjct: 107 QTKLTRLKCLKAFLSRCFDNGWIEIKFWKTINIKVDQKVKEGATERDVNVLLSLLDLSNF 166

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------SIKTQKTGTIITVELPDG 240
              +   A   +  +G+R +   +   +H+  N          +K  +   +   ++   
Sbjct: 167 IQLRDDTAVLVMFKTGIRINTLTQLEERHIDFNNNVLNLEGSIMKNHQQIKLPFDDVIKR 226

Query: 241 FMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
            +K+L                    T + +                  A   G+   + H
Sbjct: 227 MLKVLIKQNAMIRDGYGKKNSLIFITKYGDVISNSPTHNNIQKRLNKYAKMYGLKNINPH 286

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R+  A    D GA    +    G   +     Y  
Sbjct: 287 ALRRGFAKSLLDKGANVAVISKALGHSDISVTTKYLH 323


>gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490]
          Length = 345

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 95/312 (30%), Gaps = 53/312 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVE-- 124
              E+         + ++  ++   F+ +                  +  + +R+     
Sbjct: 18  WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVY 77

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  H+ +S  +  ++   L  +      +  NP  ++ RPK      + +T + +    +
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 185 FWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGT 231
                           + R      L +GLR  +  RA +  ++ N        + K   
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNK 197

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------------------KMNATQ 268
              +      +++L      +E    +  K+                       ++    
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRFSPTAPLFVGSDGERITRGT 257

Query: 269 FSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 323 TK--GADRIRLG 332
                AD  R  
Sbjct: 318 VDGAAADTRRAA 329


>gi|209544889|ref|YP_002277118.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532566|gb|ACI52503.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 452

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 94/381 (24%), Gaps = 47/381 (12%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           P         GK  Y   Y   G  RR  +      T   A   A               
Sbjct: 27  PGFGLRVFASGKRSYVLQYRALGRSRRYTIGLHGVWTAESARQEAKVQLGRVAQGDNPAE 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDY 111
                 K  T+K L + Y K  +              ++           II   G    
Sbjct: 87  ERQLDHKAITVKELCALYLKDLNAGLILGKGGRPKKPHTIVTDIGRINRHIIPLLGTRRV 146

Query: 112 RKITTKHIRSGVESRKHT--------------------PSSAIQFLTSMRVLFKWAVRQE 151
           + +T   I   ++                           +A + +     +  +AV   
Sbjct: 147 KDLTKADINKALKDIMAGKTAVSIKTSKLRGKAIVTGGAGTATRTIGLFGGILTYAVEAG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRC 206
            +  NP   + +PK      R    E           G   + A        +  +G R 
Sbjct: 207 IITTNPAHGLRKPKDNVRTRRLTEAEYRTLGLMLTKAGEDEKYATTVEIIRQIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           S+               ++   +     +          L A       T+      +  
Sbjct: 267 SEVIGLKWVEADTEGSCLRLIDSKEGTSVRPVGLPVVEFLEAKREAASGTYVFPGYGEDN 326

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               F   ++     + + + + H +R   A++  D G T   + A  G         Y 
Sbjct: 327 AFGGFPNHWEQIFKDSPLSDVTPHVLRHSFASVGNDLGFTEVTIAALVGHSKGSVTSKYI 386

Query: 324 KGADRIRLGIKNSRRISSVVD 344
              D   +    +  I+  +D
Sbjct: 387 HALDTALIM--AADTIAGYID 405


>gi|284801561|ref|YP_003413426.1| hypothetical protein LM5578_1314 [Listeria monocytogenes 08-5578]
 gi|284994703|ref|YP_003416471.1| hypothetical protein LM5923_1267 [Listeria monocytogenes 08-5923]
 gi|284057123|gb|ADB68064.1| hypothetical protein LM5578_1314 [Listeria monocytogenes 08-5578]
 gi|284060170|gb|ADB71109.1| hypothetical protein LM5923_1267 [Listeria monocytogenes 08-5923]
          Length = 384

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 95/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLKNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K     + K+   G  + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  KFKEFYELFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +      +     +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGQDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKT 229
                 S  R      + +G+R  +      + +                   +    KT
Sbjct: 178 ELAKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKQSISVNKAWDYKYTNTFTDTKT 237

Query: 230 GTIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK 276
                + + +  ++ L         +             FI    + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLAWHSAYIKEYGIKNPQMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CSTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 490

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGF 241
               +   +     E L  SGLR S++    V     +        K        L D  
Sbjct: 269 LHAEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTS 328

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
           +  L      +           F+     +++  Q +    A   +AG+ +S   HG+R 
Sbjct: 329 VDALREWLHFRHHLASEGERALFVGARGDRLDRRQATRIIDALCRRAGLPQSVSPHGLRH 388

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +AGA    +    G   +   + YT 
Sbjct: 389 SFATHLLEAGADLRSVQELLGHARLATTQRYTH 421



 Score = 53.2 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE---S 125
           +  +          +  +  ++ +   Q          G      +T +H++  +     
Sbjct: 62  LELFLAHVELEKGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPEDVTRRHVQRYLAELHR 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +   SS  + L+++R  F++ +R   V  +P  +V  P+++    R   
Sbjct: 122 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 171


>gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis]
 gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis]
          Length = 373

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 78/311 (25%), Gaps = 60/311 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK---- 127
           L++EY       + +  +  ++        R       D   +TT  +   +   +    
Sbjct: 42  LVNEYLAYLTDRNYSPRTVRAYGYDLLAFCRWLESHSNDIDSVTTDTVLDFMRHCRETAI 101

Query: 128 -----------------HTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE 169
                            ++ ++    L ++  LF +   R+  +        E  +   E
Sbjct: 102 EGRPANVLSMTGKRLDHYSATTINHRLAALTGLFTFRTLREPELRNPIPSGREARRVSAE 161

Query: 170 GIRPWTKEDMQQFKSFWS------------------------EGSQPRLAFEFLLYSGLR 205
                    ++  +                               + R     +L SGLR
Sbjct: 162 ERDGLLGHLVRPKRRSALRLREPRRLPRPLDRREAADLLSSLRTWRDRSIAGLMLLSGLR 221

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT----------PIGKET 254
             +        +      I+    G     V L      L+             P     
Sbjct: 222 SGEILALDGTDIDIGARWIRVFGKGAKERRVPLDVEVAGLIQTYLLTERPESSSPRLFLV 281

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
               N  Q +        F+    K+GV     H +R    T  A+AG     + A  G 
Sbjct: 282 AKGPNRGQPLTPAGLRTIFRYHRIKSGVPAGHPHALRHTFGTAMAEAGVDLAVMQALLGH 341

Query: 314 KTVDQAETYTK 324
             VD    Y  
Sbjct: 342 AHVDTTARYIH 352


>gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 309

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 10/241 (4%)

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PK 165
           G     K+T  +    +++ K TP  A +    +R +F +AV   +   NP  S  R  +
Sbjct: 49  GRARPSKVTPNNRARKLQAAKPTPVRANRTGEVLRKMFTYAVGWGWRDDNPASSFRRRIE 108

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              E      +          +E  +        + +G R  +  +A  +H      S  
Sbjct: 109 NPRERFLCHEEIHKLAEALETAEDRRAADIIRMCMLTGARVGEVRQAQFEHFNLEHLSWS 168

Query: 226 T---QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKAT 278
                     I           +                          +   ++     
Sbjct: 169 KPASMTKQRKIHRLPISDEAAAIVRQRQLLVPRGCVLLFPGDVPGQPVREIRRFWAHIQK 228

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
           + G+     H +R   A++    GA+   +    G   +   + Y    D  +R G+   
Sbjct: 229 QVGIPDVRIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAV 288

Query: 337 R 337
            
Sbjct: 289 A 289


>gi|322516068|ref|ZP_08069005.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
 gi|322125483|gb|EFX96829.1| phage integrase family prophage Sa05 [Streptococcus vestibularis
           ATCC 49124]
          Length = 388

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 116/384 (30%), Gaps = 60/384 (15%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINS 63
           + + + + G  +Y            G+++           +                   
Sbjct: 3   INEIKKKDGSTVYRANIYLGVDVVTGKKVTTKVTARTKKELKTKAQQAQFDFKANGSTRY 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG 122
                 T + L + +  +    ++ VN+R   +S     ++   G F   K+TT  I+S 
Sbjct: 63  KEVTIETYEALATSWWDNYK-NTVKVNTRKLQKSILDKHLLPLFGSFKLDKLTTPLIQSI 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +    +  ++          +     + + ++ V  + +  NP  +V  P+   +  +  
Sbjct: 122 MNKLANRTNTGEVGAYLHYDKIHALNKRILQYGVVLQVIPTNPASNVVLPRNTQKDKKAK 181

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            K         +                    ++FLL +G R +++       +      
Sbjct: 182 VKHFNNDELKQFLTYLDSLDNTKYNTYYDITLYKFLLATGCRINEALALSWSDIDLDNSV 241

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                     +     +   +   +++    + +L      +                N 
Sbjct: 242 VHITKTLNCEMKLNSPKSKSSYRDIDIDRQTVTMLKKYQRKQTQEAWKLGRTETVVFSNF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            K      Q +   +A   KAGVN    HG R   A++  ++G    EL    G   +  
Sbjct: 302 IKAYPRINQLTKRLRAHFDKAGVNNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSKLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISS 341
              TY+       L  +N+++ +S
Sbjct: 362 TMDTYSH------LSKENAKKATS 379


>gi|312200641|ref|YP_004020702.1| integrase family protein [Frankia sp. EuI1c]
 gi|311231977|gb|ADP84832.1| integrase family protein [Frankia sp. EuI1c]
          Length = 413

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/390 (13%), Positives = 119/390 (30%), Gaps = 62/390 (15%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++  + + HG++    +       R       T   A +  L             R  P 
Sbjct: 19  YLGADGSWHGRVTVGVKDNGKPDRRHVRGKTETEAIAKVRKLERERDNGTVRKPGR--PW 76

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+   +  + ++    S++ N+   +       ++   G     ++  +H+ S +   + 
Sbjct: 77  TVARWLEHWVENIAAPSVSENTIDGYRVAVRVHLVPGLGAHRLERLEPEHVESLMARMQT 136

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P++A Q L ++R     AVR+ +V  N     + P+     + P++  ++QQ    
Sbjct: 137 SGSAPATAHQALRTLRTALGEAVRRGHVGRNVASLAKPPRLTEAEVEPYSVAEVQQLLME 196

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
            ++  +    +   L  GLR  ++       +  +   I+ ++                 
Sbjct: 197 AAKR-RNSARWVLALALGLRQGEALGLRWADVDLDAGVIRVRRGRLRPKYRHGCATPCGR 255

Query: 233 --------------------------------------ITVELPDGFMKLLAMTPIGKET 254
                                                    +  D               
Sbjct: 256 KAGYCRDRVQIRKDTKDTKSRAGTRSIGLPDELIEILRRHKDRQDKERAEAGNLWQDGGW 315

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F +   + +N       +KA    AG+ +   H  R  +AT+    G     +M   GW
Sbjct: 316 LFASETGRLLNPNTDYHEWKALIAVAGLRDARLHDARHTAATVLLLLGVPDRTVMGIMGW 375

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            T D    Y    D   +    + R++ ++
Sbjct: 376 ST-DMRRRYQHLTDP--VLKDAAGRLNRLL 402


>gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
 gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782]
          Length = 301

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 77/285 (27%), Gaps = 27/285 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVE--- 124
            ++ +         + ++  ++ S    +             +   + T H+    +   
Sbjct: 9   AVNGFLNDLDCSHCSESTIKAYRSDLTLLNEFLDLRYKSLLNNLSAMKTSHVLQYRDFLF 68

Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
             +     +A +     R   ++     ++  NP L V+  K K      + + +     
Sbjct: 69  HKKGFKRKTADRKYFCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLEWEEIYQI 128

Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTG 230
                       ++       L Y G R S+      + +              KT    
Sbjct: 129 IDVVALFETENTARDAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAIYRRKTKTYDYL 188

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SA 286
            +                   K   F++    +++ T F   F      +G+ K    + 
Sbjct: 189 PMHPNLENAMRRYYAENRFTPKGPLFLSERGNRLSVTAFKQMFDKAVLYSGIKKEFDITP 248

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           H  R    +     GA+  E+    G   +   + Y     + + 
Sbjct: 249 HTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQHKR 293


>gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
 gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 85/269 (31%), Gaps = 22/269 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRK----HT 129
           +       A+ +   +ES    +           D    ++  + +RS     K      
Sbjct: 125 RELVGKDYALITVRRYESCKRYLAELIKLKYGKEDLPLSEVNGELVRSFEFYLKTEKECQ 184

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFKSFW 186
            ++ I+++  ++ +   A+  E++  +P + ++    K       T +    +   +   
Sbjct: 185 QNTVIRYMKCLKKITNLALANEWITKDPFIGIKF-HEKEVIREFLTMDELLTIYHKEFSL 243

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242
              +  R  F F  ++GL   D  +   +H+  +       +     T  + +  +    
Sbjct: 244 ERITIVRDVFTFAAFTGLAFIDVQQLAPEHIVEDSNGNLWIRKPRQKTKNMCNIPLLDIP 303

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SA 298
            ++L            N         + + + K  A    +NK+   H  R   AT    
Sbjct: 304 LEILRKYAEHPACQKKNRLLPVPCNQKMNSYLKEIADLCMINKTLTTHVARHSYATSVCL 363

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
             G +   +    G   +   + Y +  D
Sbjct: 364 ANGVSIENVAKMLGHSNIKMTQHYARVLD 392


>gi|15842199|ref|NP_337236.1| integrase [Mycobacterium tuberculosis CDC1551]
 gi|13882487|gb|AAK47050.1| integrase [Mycobacterium tuberculosis CDC1551]
          Length = 386

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 105/372 (28%), Gaps = 36/372 (9%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREY 60
           T   +   F    +   G+    +    GR  I     +      A+++       ++ +
Sbjct: 15  TGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLW 74

Query: 61  INSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116
             +  ++             + K      +   +R  +     + I+    D D R IT 
Sbjct: 75  SPASGQEDRPGAPFGEYAEGWLK---QRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 131

Query: 117 KHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +R    +    TP+      + +R + + A+  + +  NPC  +          +   
Sbjct: 132 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCR-ISGASTARRVHKIRP 190

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
               +      +     +       +  +R  +      + +  +    + ++       
Sbjct: 191 ATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGE 250

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSI 271
                          + +P   +  +                    N+  + +  +    
Sbjct: 251 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYR 310

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F      AG  +   H +R   A ++A  GAT  ELM   G  T   A  Y   A  R 
Sbjct: 311 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 370

Query: 330 RLGIKNSRRISS 341
           R       +++ 
Sbjct: 371 REIAALLSKLAE 382


>gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 283

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 85/269 (31%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESR---- 126
           + E+           ++  ++    +  ++   +   R+        HIR+         
Sbjct: 1   MQEFFNWLLGKGKMESTAKTYIRAVENFLKWYSESYDREFDGKVLPLHIRNYRSYLMTVK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
           K    +    L++++    + V +  +  NP L       +  G        +D  + + 
Sbjct: 61  KLNAKTINNNLSAIKSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEE 120

Query: 185 F--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  ++    F  L Y+G+R S+ C   +  +  +   I   K G    + L     
Sbjct: 121 AVVHYGSARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVR 180

Query: 243 KLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           + +      +  +  ++          K++ +      K     A +     H +R +  
Sbjct: 181 EAIDNWLKERGKYKYSHLDYLFISERGKLDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFC 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
             + + G T  E+ A  G   +   + Y 
Sbjct: 241 KRALEKGFTITEVAALAGHSRITTTQVYI 269


>gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53]
          Length = 356

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 104/324 (32%), Gaps = 14/324 (4%)

Query: 25  FRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           +++  G R +       +E+  +  +        P   +    +    T + +  E+  S
Sbjct: 36  YQRKDGARHQKRKIIGYYETEEMAEFSLWNYNKNPVL-FAEIEKLGTITFENVYMEW-SS 93

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
             + +++  +   +++ + +      +     +   H +  ++    + SS ++  + M 
Sbjct: 94  TKYKNISQTAINGYKAAYAR-CSSIWNVRMTDLKAMHFQRIMDESTLSLSSDLKLRSLMM 152

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           ++ ++AV+ + +  N    V   +++          + +  + F  +          ++Y
Sbjct: 153 LVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEQLFDHDNIPFVDTVLIMIY 212

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R  +      + +     +I+           L     K+           +     
Sbjct: 213 TGFRVGELFNIRREDVDVQNMTIRGGSKTEAGKNRLVPVHEKIQKYVMDYYLQNYEYLIS 272

Query: 262 QKMNATQFSI------WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +F+       +F        +    H  R   AT  ++ GA +  +    G  +
Sbjct: 273 DTDTGKKFNYHMYRNQYFDKIMDMLDMEHLPHDCRHTFATRLSNYGANSTCIKKLIGHSS 332

Query: 316 VDQAE-TYTKG-ADRIRLGIKNSR 337
               E  YT     ++R  I   +
Sbjct: 333 YATTEKIYTHKDVAQLRRAISTLK 356


>gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 392

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 113/388 (29%), Gaps = 61/388 (15%)

Query: 14  ERTRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            + + G    Y R      +   +    +  +            +   +Y     KK  T
Sbjct: 9   YKRKDGTT--YVRWVGESNLDSYKPKTVYGKSKKECEDKIRDYESDFIKYGTRLVKKRIT 66

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR-KSGDFDYRKITTKHIRSGVESRKH 128
           L  L+ ++  +    S+++ +   + S ++  I     G  D +KI  + ++    S+  
Sbjct: 67  LSDLMYDHLFTNTKASVSLGTFERYMSLYNTHIKDSALGKRDIQKILQRDVQQFFNSKTE 126

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185
            +  S       +   F   +  +++ INP   +  PK     + I   T E+ + F   
Sbjct: 127 LSSKSLSMLKYLLNQSFDHGIANQFIRINPMKKITLPKSTYVEKEIEVLTHEEQKAFMGV 186

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231
            +E S  ++ F   L++G+R  +       ++      I  +++                
Sbjct: 187 VNE-SFYKMLFTVALHTGMRVGEIMALKWHNVDLIDHMIHVKESSRLVKEYDSEGNGEDK 245

Query: 232 -----------IITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKA 275
                      I  + +     + L            +         ++     +   K 
Sbjct: 246 VITKSPKTKAGIRDIPIHPSLSEELTAYKAEHNGQDDDYVFKNSKGNQIKYDSIAKAHKL 305

Query: 276 KATKAGVN-----------------KSAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
              KA +                   + HG+R   AT   + G     +    G   V  
Sbjct: 306 LCEKAKIRPYTEIGSNGESIIKYKGITFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKI 365

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDS 345
               Y    D  +       ++   + +
Sbjct: 366 TLNRYVHSTDDTK--KDAIHKLQKALSA 391


>gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12]
 gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12]
          Length = 407

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 103/395 (26%), Gaps = 69/395 (17%)

Query: 16  TRHGKIIYYFRKGHG--------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +  Y     +G        ++I             +   + G     EY  +   K
Sbjct: 10  KKSKEYRYEVYISNGIDPGTKLQKKIHKKGFKSHEEAERFAKIVEGEIASEEYTQN-NPK 68

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T++  + ++  +    ++   +RI   +     I    G +   K T    +  +   
Sbjct: 69  NLTIEKFMDDWINNYKM-NVKEGTRIVHRANIKMYITPYIGKYKLDKYTRADHQRFINQL 127

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        + ++A     ++   FK A++  Y+  NP   VE P+  ++  +   
Sbjct: 128 LTKKGLGRTKEGLSVTTAKSINATLSNAFKKAIQLRYIKNNPTSFVEFPRNPSDKKKVKY 187

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
               Q          +    +          GLR S++       +  +  ++   +   
Sbjct: 188 YTFDQSELFLEFAKKEKSFIWYPFFLIIFDQGLRKSEALGLQWADIDFSQNTLNINRERL 247

Query: 231 ---------------------TIITVELPDGFMKLL------------------AMTPIG 251
                                   ++ +     K L                        
Sbjct: 248 GAAEKGPNKGLIITDDTKTPSGTRSLPMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFL 307

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
               +  N    +     +        +A +   + H  R   A  +  AG    ++   
Sbjct: 308 FINTYRKNKGIPIRDRTVNGASHRIEKRANLPHITVHDGRHTFAARTRQAGIPLEDIKDF 367

Query: 311 YGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVV 343
            G K V   + Y   +   + R   +    I   +
Sbjct: 368 LGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQI 402


>gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans]
          Length = 287

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 67/253 (26%), Gaps = 7/253 (2%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            ++ +     +        +  Y+     K G+    +++       ++ +   P    +
Sbjct: 19  DDWLEREAVDANRHGEHRKWLRYYLDFCHKYGNGYLDELSLGLFAEKLQDKGQHPFQIEE 78

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++R+ ++ A   +     P    ER  +                 +   E  + R  
Sbjct: 79  ASRAVRLYYRMAGETKDALPTPACEPERISKLPPATMKSEGASWVGELTRLREEIRIRHY 138

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
               L      S    A          S     T  +          + +A      +  
Sbjct: 139 SAKTL-----SSYYGWARKFQAFVRSKSPTLLDTDDVKRYLTWLAVERDVAQHTHSTDPR 193

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
                +  M    F   FK    +AG+ K  + H +R   AT    +G     +    G 
Sbjct: 194 SGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 253

Query: 314 KTVDQAETYTKGA 326
             V     YT   
Sbjct: 254 SDVSTTMIYTHVL 266


>gi|120599333|ref|YP_963907.1| phage integrase family protein [Shewanella sp. W3-18-1]
 gi|120559426|gb|ABM25353.1| phage integrase family protein [Shewanella sp. W3-18-1]
          Length = 402

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 97/330 (29%), Gaps = 26/330 (7%)

Query: 21  IIYYFRKGHGR-RIRLPYPHESTFIPAYM-------SALTGSTPKREYINSPR-KKPTTL 71
             Y FR  +   R+ L    + T   A         S      P+  +      +   T+
Sbjct: 40  WQYRFRFENKPSRLTLGRYPDITLADARKVVPELRGSIANNIDPRIFWKQRNTYQDAITV 99

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HT 129
           +    ++ +     +L   +  S++SYF+  +     D     IT        + +   +
Sbjct: 100 RECCEKFLQ-VRSDALKKGTINSYKSYFNAHLFDAFADRKVESITLGEWIDFFDKKAAVS 158

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +A   L  ++ +  WAVR++ +++   L +      +            +    W E 
Sbjct: 159 RVNAGAILRHLKTVLNWAVRRQMISVVDVLQLRVTDVGSHSKVGSRVLTFNECGKIWREL 218

Query: 190 SQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            + R         +  + SG R S+  ++       +          +   + +      
Sbjct: 219 DKRRATKTIVNVIKACMLSGARVSEILKSKRDDFDLDAMVWTVPTQYSKTNIPIRRPISA 278

Query: 244 LLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
            L      +   + +             N +  +   +      G+     H  R+  +T
Sbjct: 279 ALLEILQEQWNLYRSPWCFPAADVSKPANISAVNKLVRHIKDNVGIPEWRIHDFRRTLST 338

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
             ++AG   H      G         Y K 
Sbjct: 339 RMSEAGVLPHVTEKMLGHLLGGVMAVYNKH 368


>gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTMADIDFANEVVVIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  +        +               K  ++ T
Sbjct: 260 IETPKTKSGVRNVPLSKETIQAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDYT 319

Query: 268 QFSIWF-----KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +       K    +   + + H +R    T  A       +L    G   +      
Sbjct: 320 TLFVRMVKKYNKHHKDRLLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
 gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238]
          Length = 327

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 70/256 (27%), Gaps = 13/256 (5%)

Query: 78  YRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y +      +++ N++ +  +    + R+        +  K        +     +    
Sbjct: 62  YLEHLVIKQNVSPNTQKTALNALVFLCREFLQQSVDSLDFKR-----SKKATKLPTVFTH 116

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
             +M V+       + +A     S  R              D +       +G++ R + 
Sbjct: 117 KEAMDVIHNLNHPIKLIAQLMYGSGLRINEALRLRVNDIDLDKKIITIKSGKGNKDRTSI 176

Query: 197 EFL-----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   + + L              N+   +         T     G+  +     I 
Sbjct: 177 LPESVVDAIKTQLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQYVFPSPQIS 236

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           K+     + +  +         K    K G++K  S H  R   AT   + GA    +  
Sbjct: 237 KDPRSEKHRRHHLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERGADLRTIQE 296

Query: 310 TYGWKTVDQAETYTKG 325
             G   +   + YT  
Sbjct: 297 LLGHSDIKTTQIYTHV 312


>gi|166032157|ref|ZP_02234986.1| hypothetical protein DORFOR_01860 [Dorea formicigenerans ATCC
           27755]
 gi|166027880|gb|EDR46637.1| hypothetical protein DORFOR_01860 [Dorea formicigenerans ATCC
           27755]
          Length = 393

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 106/340 (31%), Gaps = 43/340 (12%)

Query: 18  HGKIIYY----FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +G   +     +    G++I   R  +  +      Y   +  ST +       +K+  T
Sbjct: 11  NGTYYFRANLGYHPVTGKQIQKYRSGFSTKKEARAEYSKLILASTEELAD----KKEDIT 66

Query: 71  LKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
            K  I E Y        +  ++  +  S   +           +I   ++++       +
Sbjct: 67  FKKFIEEIYLPWYK-TQVKESTYKNRYSTIQKHFAYFYKKKVSEIEAINVQTWQLKLAKQ 125

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P+        + + F  A+       NP   +   K K   I  WT E+ Q+  S   
Sbjct: 126 FSPNYVRIVQGMLCLAFDRAIILGLAKKNPARMIGNIKSKKVKIDFWTLEEFQKVISLLY 185

Query: 188 EGSQP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIFSIKT 226
           +G      L   F L   +G+R  ++       +                  N+   ++ 
Sbjct: 186 KGDYYEHYLFISFWLLFMTGMRIGEAAALQWDDIDFETGMLIISKTLYYKTMNDYKFVEP 245

Query: 227 QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280
           +   +  T+ +    +K L               F ++ +    + T      +  A  A
Sbjct: 246 KTQASNRTIYIDADTIKELQEWKAVQAKVLPNCGFVLSYNSTPTSKTTLPRALEKLANLA 305

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           GV++   H +R   A++    G     +    G + +   
Sbjct: 306 GVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis]
 gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68]
 gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis]
 gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium]
 gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta]
 gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245]
 gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium]
 gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis]
 gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68]
          Length = 397

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 101/378 (26%), Gaps = 54/378 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           +S        ++ ++      
Sbjct: 24  RYAYKYVDTFGKPQFVYSWK-----LVPTDKTPAGKREDISLREKEKEIQKDLDDGIDTI 78

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++  N+++  E     +   + G      +     +      
Sbjct: 79  GKKMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A++ + +  NP      +     TE   P T    + 
Sbjct: 139 KEKGLSYKTINNDKRSLKAAFYTAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEES 198

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCR-------AGVQHLQNNIFSIKTQKTGT 231
           F SF        +   A   LL +GLR S+ C           + +  +   ++    G 
Sbjct: 199 FLSFIQGDKVYQKHYDAIVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGY 258

Query: 232 IITVELPDGFMKLLAMTPIGKETFFI----------------------NNDKQKMNATQF 269
            I        ++ + M     + F                          +   M A  +
Sbjct: 259 YIDEPKTQSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDY 318

Query: 270 SIWFKAKATKAG------VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F     K        + K+   H +R    T  A+AG     L    G   +     
Sbjct: 319 GGMFGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLN 378

Query: 322 YTKGA--DRIRLGIKNSR 337
           Y   A  D  R  ++   
Sbjct: 379 YYAHATFDSARAEMERLA 396


>gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv]
 gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11]
 gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85]
 gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv]
 gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551]
 gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem]
 gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11]
 gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605]
 gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85]
 gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003]
 gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A]
 gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148]
 gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 332

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 97/305 (31%), Gaps = 17/305 (5%)

Query: 27  KGHGRRIRLPYPHESTFI-------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
             +G   RL    E T          A+++A   S  K          P + +  I +Y 
Sbjct: 22  IKNGHHFRLRDADEITLAVGHLGVVEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYL 80

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLT 138
            + +       +    ++         G      +T +H+   +  ++H +P     + +
Sbjct: 81  LNLNAAGQRPATIRLRKTVLCAAAHGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRS 139

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++R  F WA   + V      S+ + +   +  RP   +  Q   +      +  L    
Sbjct: 140 TLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAK--ADRRIELMIRL 197

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              +GLR +++ +A    L +    +   K G    V + D    L+  TP G       
Sbjct: 198 AGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGT 257

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                          K  +     + + H +R   AT +         +    G  ++  
Sbjct: 258 GGHL-----TAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVT 312

Query: 319 AETYT 323
            E YT
Sbjct: 313 TERYT 317


>gi|303326016|ref|ZP_07356459.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863932|gb|EFL86863.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 337

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 11/331 (3%)

Query: 17  RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G   +  R +  G   +            +  A+        +I+    + T+L+   
Sbjct: 6   KRGDFQWEVRVRRKGHPTQCKTFEIKADAERWARAVEKEMDGGAFISQKEAERTSLEEAF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             +       +LA + +         +           I    I   ++ R     +P +
Sbjct: 66  KRFIPEYIEKNLA-HPKNEIVRAHGIMKYPFAKKSLVAIRGNDIAKLIQEREAQGRSPHT 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + +  +  L++ A     +   +NP  +V +PK      R     + ++     S+  
Sbjct: 125 IARDIALISRLYEVARANWGMEGLMNPTKNVIKPKLPQGRTRRLMPGEEKKLLEASSKAF 184

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           Q  L F            S       L+  I  +   K G   TV L    + +L   P 
Sbjct: 185 QRILRFALESSMRREEIASLTWQQVDLERCILFLPKTKNGEARTVPLSPAALAILKEIPR 244

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELM 308
            +              +  +   +    KAG+ +   H +R  + +   +       E+ 
Sbjct: 245 PEGERHDQRVFS-YTISSITGAMRENCAKAGIKDLRFHDLRHEAISRLFENTDLDVMEIR 303

Query: 309 ATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338
              G KT+     YT   A+R+   +  ++R
Sbjct: 304 MITGHKTLQMLARYTHLRAERLVERLAGAKR 334


>gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 411

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/392 (10%), Positives = 94/392 (23%), Gaps = 74/392 (18%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + +Y +    GRR  +      T        +       +   + +    T+ ++   Y 
Sbjct: 25  RYVYTYTDPLGRRKYVYAQDLVTLREKEAQLMKDQMDGLDIYVAGKA---TVNFVFDRYM 81

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                 +L   ++ ++   +D+      G  +  +I    +              I  L 
Sbjct: 82  SLK--SNLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSDVVQFYNHLIEKQELQINTLE 139

Query: 139 SMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  L              R+           +    KT      T    + F  + +  
Sbjct: 140 TVHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTGVRHALTIPQQRAFMEYIATH 199

Query: 190 SQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNN----------------------IFSI 224
                 +      L +G R  +      + +                             
Sbjct: 200 PIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYEKRIISINHNLTYYPVGEDRASENHIA 259

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270
             +    + T+ + D       M                      F N     MNA   +
Sbjct: 260 TPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGFVFCNRYGNVMNAQSVN 319

Query: 271 IWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMATYGW 313
              K  ++                     N SAH +R    T   +       + +  G 
Sbjct: 320 RAIKRISSAYNATEEIEAKKEHREPVLLPNFSAHSLRHTFCTRLCERETNLKVIQSIMGH 379

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           K +      Y +  +  +   +    +++ +D
Sbjct: 380 KDIQTTMDIYAEATEEKK--QETFEHLAATMD 409


>gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22]
 gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22]
          Length = 337

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 106/322 (32%), Gaps = 22/322 (6%)

Query: 11  VTKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +T ++   G+     R    +G+RIR     + +   A+      +   +E++  P  K 
Sbjct: 1   MTIKKLDDGRYEVDIRPAGRNGKRIR-RKFDKKSEAVAFEKHTQYNHHDKEWLAKPTDKR 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
             L  L   +               S     +   R + D    +IT   I     +R+ 
Sbjct: 60  H-LSELTKVWWD---LKGKHEEHGKSNLGKIEIFTRITDDPCAFQITKALISQYSMTRRG 115

Query: 128 --HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               P+S  + LT +  +F   +  + +   +P   +++ K +       T+E++     
Sbjct: 116 QGIKPTSINRDLTCLSGMFTALIDAELFFGEHPFRGMKKLKEQKPETGYLTQEEIT--LL 173

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +     +      L +G R  ++ +   +++  N  +    KT    TV + +    +
Sbjct: 174 LANLDGDNKKIAILCLSTGARWGEAAKLKAENVIQNRVTFVKTKTNKPRTVPISEEVAVM 233

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +A                  +  +F    K         ++ H +R   AT     G + 
Sbjct: 234 IAGKGYLFPDA---------SYPKFRRTMKDVKPDLPDGQATHALRHSFATHFMINGGSI 284

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   ++Q   Y   A
Sbjct: 285 ITLQRILGHSRIEQTMVYAHFA 306


>gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++IT   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  + GL  SD      +++Q +        T         D  + LL +  +  + + 
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIIT--KRVKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism]
          Length = 311

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 78/301 (25%), Gaps = 52/301 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R+       ++ +  ++  +  + I   G    R++    + + +       + +
Sbjct: 13  LLDQVRELIRIRHYSIRTEQAYLQWIRRFIVFHGRRHPRELGADEVTAFLSHLAIQRNVA 72

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  +           +    +V+R K+        T+++++   +       P
Sbjct: 73  ASTQNQALNAILFLYRDVLRCQLPWLENVQRAKKPQRLPVVLTRDEVRAVLA--QLQGTP 130

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------------------- 223
            L    +   GLR  +  R  V+ +                                   
Sbjct: 131 WLMAALVYGGGLRLLECLRLRVKDIDFQYRQLLIRDAKGQKDRVTLLPQNLLEPLRNHLV 190

Query: 224 -IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------- 269
            ++T     +            LA    G E  +                          
Sbjct: 191 RVRTLHENDLRESCGCVHLPFALARKYPGAEREWSWQYVFPSTRRSIDPRSGIERRHHAP 250

Query: 270 ----SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +     AG+    S H +R   AT   ++G     +    G   V     YT
Sbjct: 251 EDSLQRALRQAVRGAGIIKPASVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYT 310

Query: 324 K 324
            
Sbjct: 311 H 311


>gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17]
 gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46]
 gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46]
 gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17]
 gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46]
 gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17]
          Length = 332

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 97/305 (31%), Gaps = 17/305 (5%)

Query: 27  KGHGRRIRLPYPHESTFI-------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
             +G   RL    E T          A+++A   S  K          P + +  I +Y 
Sbjct: 22  IKNGHHFRLRDADEITLAVGHLGVVEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYL 80

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLT 138
            + +       +    ++         G      +T +H+   +  ++H +P     + +
Sbjct: 81  LNLNAAGQRPATIRLRKTVLCAAAHGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRS 139

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++R  F WA   + V      S+ + +   +  RP   +  Q   +      +  L    
Sbjct: 140 TLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAK--ADRRTELMIRL 197

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              +GLR +++ +A    L +    +   K G    V + D    L+  TP G       
Sbjct: 198 AGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGT 257

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                          K  +     + + H +R   AT +         +    G  ++  
Sbjct: 258 GGHL-----TAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVT 312

Query: 319 AETYT 323
            E YT
Sbjct: 313 TERYT 317


>gi|218296123|ref|ZP_03496892.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218243500|gb|EED10029.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 377

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 107/372 (28%), Gaps = 49/372 (13%)

Query: 5   LRLPPF---VTKERTRH--GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            + PP    + + +     G I   +      R ++ Y      +   ++ L     +  
Sbjct: 3   RKRPPGEGSIYQRKDGLWVGAITVGYTPRGNPRRKVVYGRTRQEVARKLAELQVLHHRGL 62

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFD 110
                     T++    ++ K      +   +  S+  +  + I          + G   
Sbjct: 63  LA---EPAQITVRDWAEDWLK-RKAAEVRPRTLESYRYHLAKAIPSLRDPTAHDRFGRMR 118

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKT 168
            + +   H+R  ++  + TP +       +  +F+ AVR E +  NP     V+ P RK+
Sbjct: 119 LQSVQPLHVRRHLDGLRLTPHAMKNIRWLLHAVFEDAVRMELIHRNPVAPVKVKGPPRKS 178

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            G      E  +   +  +  S   LA   +L  GLR  ++     + +      +  ++
Sbjct: 179 PGRTLEPDEARRLLAALDAHPSTLALALRLMLTCGLRRGEALGLKWEDVDLKEGILHVRR 238

Query: 229 TGT---------------------------IITVELPDGFMKLLAMTPIGKETFFINNDK 261
                                                +    L          F   +  
Sbjct: 239 AWAKVGGKGVISEPKTSSGYRAVPIPPTTLERLRAYRESVQGLSEEEVQRSWLFPGRDPS 298

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           Q ++      + +    + G+ +   H +R    ++    GA    +    G    +   
Sbjct: 299 QPVHPDAPDHFLRRLLARLGLPQVRVHDLRHTYGSLLLAHGAPVELVAERMGHANPNITL 358

Query: 321 -TYTKGADRIRL 331
             Y    +  R 
Sbjct: 359 GIYRHLLEEERR 370


>gi|77410914|ref|ZP_00787270.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77162969|gb|EAO73924.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
          Length = 384

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 107/358 (29%), Gaps = 47/358 (13%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G +     Y  R                    Y + L             +    
Sbjct: 9   KKAKNGYLYLVKVYMTRDAQRADHIKRGFRTRKEAKDYEARLIYLKASGRLEEFIKPTHK 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   +  ++ ++     +   +       F   I+   GD    KI+    ++ +  +  
Sbjct: 69  TYNEIFEKWYQAYQDT-VEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFITEKAK 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK--SF 185
           T  +  Q  +    +F +A++ + +  NP   +  PKRK   I   WT +++++F     
Sbjct: 128 TFKNIKQIKSYTGKIFDFAIKMKLLKHNPMAEIIMPKRKKTQIENYWTVQELKEFLAIVL 187

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------KT 229
             E  +    F  L YSGLR  +        +     ++                     
Sbjct: 188 QEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKGTKND 247

Query: 230 GTIITVELPDGFMKLLAMTPIGKE--------------------TFFINNDKQKMNATQF 269
            ++  ++L    + +L       +                        +   + ++A   
Sbjct: 248 FSVRKIKLDSETISILQEWKANCQKEKAQLAVAPLSIKQDFIFTYCTRSGSVEPLHADYI 307

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +        K G+ K S HG R   AT+  + G          G  +     +TY+  
Sbjct: 308 NNVLSRIIKKHGLKKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHS 365


>gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2]
 gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2]
 gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++    ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWFKAKATKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +    K  K        + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMIKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 419

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 126 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 185

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 186 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 244

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 245 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      N +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 305 LDIANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 364

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 365 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 396


>gi|251773314|gb|EES53863.1| putative phage integrase [Leptospirillum ferrodiazotrophum]
          Length = 275

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 91/282 (32%), Gaps = 21/282 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K    K     +            S  +  S    I  +  D    ++T K +R   E +
Sbjct: 2   KKKKWKHASERWLSERAGKK----SIGTDRSMLFWINTRWKDRLLEEVTAKSVRKLAEEK 57

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           K   + S+A + L  ++ L + +V   ++   P   ++        +R  T+E+ ++   
Sbjct: 58  KAETSASTANRTLALIKALLRASVEWGWLDRVP--PIKLYPLDNRRVRWLTREEARKLIG 115

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240
              E  +P     F L +GLR S+        +           +  K+G  I V L + 
Sbjct: 116 HLPEDLKP--MVLFSLATGLRRSNVFALEWSQVDLARNVAWIHGEQSKSGKPIGVPLNET 173

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
              +L       E F   +   K         ++     AG+     H +R   A+    
Sbjct: 174 AGAVLKKQKGQSEVFVFPDKNGKARNRLADRAWRKALRAAGIENFRWHDLRHTWASWHVQ 233

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           +G     L    GW +      Y        L  ++  + + 
Sbjct: 234 SGTPIPVLQELGGWHSYAMVLRYAH------LAPEHLAKWAG 269


>gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47]
          Length = 408

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 89/311 (28%), Gaps = 62/311 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             I E+R+S     LA+ +  S+       +   G          H              
Sbjct: 77  DAIQEFRRSMRRAGLAIATERSYVKKLKAFMADRGLNCLADFDRIHASDVEAHLTDLAVD 136

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+  Q   S+   F+  +++E   I    + +     T           +  + F
Sbjct: 137 GNVSPSTQNQAFHSLLKFFELVLKREMGKIEAIRANKNSMAPTV------MSPEEVGQVF 190

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK 243
                   +  + L   G+R S++ R  V+ +        I+  K      V +PD  ++
Sbjct: 191 EGLEGVYLVIAKLLYGCGMRISEAHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIE 250

Query: 244 LLAMTPIGKETFFINN-------------------------------------------- 259
            L      +E    ++                                            
Sbjct: 251 PLRRFVKTREALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGR 310

Query: 260 -DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++A+ F    +    +AG+  + ++H  R   AT     G    ++    G   V
Sbjct: 311 IHRHHLHASTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDV 370

Query: 317 DQAETYTKGAD 327
              E YT   +
Sbjct: 371 KTTEIYTHVRN 381


>gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 384

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 86/354 (24%), Gaps = 51/354 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G   Y +   H +R  +     +                 +Y         T+  L+  
Sbjct: 22  NGTYDYRYTDIHKKRRCIYAKSLTELRKKEEELWRDLADGIDYA----AGEMTVADLVDR 77

Query: 78  YRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y        L  NS  S+ +   +I     G    + +     +        +       
Sbjct: 78  YMNLK--RGLKPNSLRSYNTAVKRIHADPFGQKAIKTVKLSDAKGWFVFLHDSGFKQNTI 135

Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190
               + +R  F+ AV  + +  NP      +   +        T+E  +++  F  + G 
Sbjct: 136 GILQSVVRPAFEMAVEDDIIRKNPFKFKLSDVVPKDAYVRDALTREQQEKYLQFVQDYGG 195

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------I 233
                   L+ +GLR S+        +      I  ++                      
Sbjct: 196 NYYDDIVILIGTGLRVSELYGLTRADIDFERHCIHVRRQLCRTAEKPYFVTPPKTKSGIR 255

Query: 234 TVELPDGFMKLLA--------------------MTPIGKETFFINNDKQKMNATQFSIWF 273
            V + D     L                        + K          +         F
Sbjct: 256 NVPMTDTVCAALRRVVKARASTKVEALVDGCSGFLFLDKSGMPKVAMHLENYMRGVQGKF 315

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
           +    K     + H +R    T    AG     L    G        + YT  +
Sbjct: 316 EKAYGKPVPRVTPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSS 369


>gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 222

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245
               + R   E L  +G R S++    +  L  +   ++   K      V +     + L
Sbjct: 45  PVSLRDRALLEVLYATGARISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEAL 104

Query: 246 AMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKS 285
                           G    F+N   + ++        +  A +AG+           S
Sbjct: 105 DAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRIS 164

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
            H +R   AT     GA    +    G  +V   + YTK   D +R
Sbjct: 165 PHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLR 210


>gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 269

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 75/258 (29%), Gaps = 16/258 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
            ++ +     SL+ N+  S+     Q   +        +T K +R         + P + 
Sbjct: 5   EKFERHLRGTSLSENTISSYMFAIKQYGEQY-----DDVTQKKLREYKVWLIENYKPKTV 59

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++    +   ++ +      +  +           +             +     
Sbjct: 60  NLRLRAINCYLECIGKENWKQPFVRVQQKTFLENVISEADYKYFKSCL---KNDDEMFWY 116

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPI 250
               FL  +G R S+  +   +H++     + ++           +   + L+       
Sbjct: 117 FVIRFLAATGARVSELIQIKAEHVKLGHLDLYSKGGKLRRIYIPKELQSEALSWLAEKQQ 176

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                F+N    ++     S   K  ATK G+N      H  R   A    +       L
Sbjct: 177 ESGFIFLNKYGDRITTRGISGQLKKLATKYGINTAVVYPHSFRHRFAKSFLERCNDIAFL 236

Query: 308 MATYGWKTVDQAETYTKG 325
               G ++++    Y + 
Sbjct: 237 ADLMGHESIETTRIYLRK 254


>gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
 gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353]
          Length = 286

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 77/262 (29%), Gaps = 13/262 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR--KH 128
           + ++  Y K       +  +   +     +  +   +   ++ IT + + S   S   ++
Sbjct: 7   REMLVCYEKVLIEEEKSQATIEKYMRDVRKFFQYVEEMGKKEGITKEIVLSYKRSLIEEY 66

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            PSS    L S+   FK     E +  +  +            R  TKE+  +      +
Sbjct: 67  APSSVNSMLASLNHFFKVNHWYECIVKSLKIQQRT---FRAKERELTKEEYYRLLRAAQK 123

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             + RL        G     S    +                   T+ LP    +LL   
Sbjct: 124 EGKYRLYCILQTICGSGIRVSELKYITVKAVTRGRAVIFMKNKTRTILLPPKLCRLLKDY 183

Query: 249 PIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301
              ++      FI      ++ +      K     AGV +     H +R   A     A 
Sbjct: 184 CKQEKITSGMIFITRRGNPVDRSNILHEMKNLCGTAGVEREKVFPHNLRHLFAYTYYKAE 243

Query: 302 ATAHELMATYGWKTVDQAETYT 323
                L    G  +++    YT
Sbjct: 244 KDIAHLADILGHSSINTTRIYT 265


>gi|304320755|ref|YP_003854398.1| Phage integrase [Parvularcula bermudensis HTCC2503]
 gi|303299657|gb|ADM09256.1| Phage integrase [Parvularcula bermudensis HTCC2503]
          Length = 440

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 98/364 (26%), Gaps = 45/364 (12%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRR---IRLPYPHESTFIPAYMSALTG---STPKREY 60
           P         GK  Y   +R     R   I L                 G          
Sbjct: 27  PGFGLRVFPSGKRSYLIQYRARGRSRRYSIGLHGVWTPETARREAKIRLGDVAQGDDPAA 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDY 111
                ++  T++ L  +Y                    +           II   G    
Sbjct: 87  EREEERRAVTVRELCEQYIADMEAGLVLGKGGRPKKATTVATDVGRIRRHIIPLLGTRRI 146

Query: 112 RKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQE 151
           + IT   + + ++                      +    +AI+ +  +  +F +A+   
Sbjct: 147 KDITKPDMNNLMKDIIAGKTRVVMKTEKLRGKAIVRGGRGTAIRTMGLLGGIFSYAIEAG 206

Query: 152 YVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRC 206
            +  NP   +++P+ +    R        +        + S   +  E    +  +G R 
Sbjct: 207 IIDQNPTHGLKKPRYRVRDRRLSEAEYRTLGHILKEVQDDSHYGIHAEILRLIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETFFINNDKQKMN 265
            +        +      ++ + +    +V       +  L      +   F+   + + N
Sbjct: 267 GEIIGLRWSEVDIEGSCLRLKDSKEGASVRPVGLPVIDYLEAARSKRNGTFVFPGQGEDN 326

Query: 266 ATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A   F   +K       + + + H +R   A+I+ D G T   + A  G         Y 
Sbjct: 327 AVGNFPQSWKKLFADTPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYV 386

Query: 324 KGAD 327
              D
Sbjct: 387 HTLD 390


>gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 327

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 75/304 (24%), Gaps = 51/304 (16%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +   I E R+       ++ +  ++  +    IR +     + + T  + + +    +  
Sbjct: 2   VSKFIEEIRRHMRMRGYSLKTEKAYIYWIKYFIRFNKLKHPQDMGTTEVTAYLSYLANEQ 61

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             AI           +   Q        L     K++ +     T  ++Q   S      
Sbjct: 62  HVAINTQKVALNAIAFLYNQFLQRPLGDLGFTYAKKQRKVPSVLTPNEVQLILSH--LSG 119

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------------------- 221
                F  L  SGLR ++  R  VQ L                                 
Sbjct: 120 VNHSIFSLLYGSGLRVNECLRIRVQDLDLQNLSLTVRDGKGKKDRVTLLSPTLIDSLQLQ 179

Query: 222 -----------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
                             S+                +M +     I +        +  +
Sbjct: 180 IQKASKIQEEDIKQGIGPSLPHALGKKYPNAFKQIAWMFIFPSLSICRHPLTNKLCRHHL 239

Query: 265 NATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + +      K    +A +     + H  R   AT    +G     +    G   V   + 
Sbjct: 240 HDSAPRKALKRAVQQAKIFNKRITCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQI 299

Query: 322 YTKG 325
           YT  
Sbjct: 300 YTHV 303


>gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1]
 gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5]
 gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC
           27755]
 gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1]
 gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5]
          Length = 397

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 91/365 (24%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P E    P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKEKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++    ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNLQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2]
          Length = 337

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 396

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 18/271 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             I  +R+     +L  +++ +  S    + +   D  +  +T + I S     +     
Sbjct: 106 AFIPFFRQEIANSTLKESTKRNHLSTLSLLQQFKKDVTFSDLTFEFISSFEYFLQSRGYH 165

Query: 133 AIQFLTSMRVLFKWAV----RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                  M+ L +       +             + K         + E++++ +     
Sbjct: 166 TNTIAKHMKHLKRHINVAINKDYMEIQKYAFRKYKIKTIENKHTHLSPEELEKLEKLSLA 225

Query: 189 GSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           G   +L     AF F  Y+G+R SD       ++               I          
Sbjct: 226 GRYTKLQKTLDAFLFCCYAGMRYSDFISLSPDNIVEIRQET--WLIYKSIKTSTEVRLPL 283

Query: 244 LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            L           K    + +     + +  +      +  AG+    S H  R  +AT+
Sbjct: 284 YLLFEGKGLVILDKYRDDLQSFFHLRDNSNVNKDLIVISRLAGLSKKISFHTARHTNATL 343

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
               G     +    G K+V   + YT   D
Sbjct: 344 LIYNGVNITTVQKLLGHKSVKTTQVYTNVMD 374


>gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 413

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 27/279 (9%)

Query: 77  EYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHT- 129
            Y +     +LA  +  ++   E+Y  + +       D   + IT+K +       + + 
Sbjct: 114 AYHEEKMKNTLAPGTLKNYGATENYLKRFLAAKHKTDDIKLKDITSKFVFDFEYYLRTSK 173

Query: 130 ------PSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 P S    +  M   + L   A++ E++  NP  +   PK         T+ ++ 
Sbjct: 174 PIDHHNPLSNNGVMKHMERFKKLINLALKIEWIEKNPFRNF-TPKFDRVEREFLTEAELT 232

Query: 181 QFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + K         Q R  F F  Y+GL   D      +++   +   K   T    T    
Sbjct: 233 KIKEKDFGRRLEQVRDIFVFSCYTGLSFIDVANLSEENIIIGMDGEKWISTHRQKTFNKV 292

Query: 239 D-----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                     +L       +           +  + + + K  A    + K  + H  R 
Sbjct: 293 FLPLLPQAEAILEKYKDNPQAQHRGILLPAASNQKTNAYLKEIADLCEIKKKLTFHIARH 352

Query: 292 FSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT      G     +    G   +   + Y K  +  
Sbjct: 353 TFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKVVENK 391


>gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7]
 gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7]
          Length = 415

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 108/384 (28%), Gaps = 72/384 (18%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +  +G   + +R   G+R  +   +  T        L       + IN+   K  T+ 
Sbjct: 18  EYQRSNGSFEFKWRDKMGKRHSV---YAKTLDELREKELDVLRDTLDGINA-DVKNLTIN 73

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGV----ESRK 127
            L ++++       L  N+  +++  ++Q +  K G      +    +R+      + R 
Sbjct: 74  DLYNKWKTLK--KGLKDNTFSNYKYSYEQFVEPKFGRIKLTDLKRTDVRAFYNYLADERH 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWT---KEDM 179
              +S     T +  + + AV  +Y+  NP  +             +  R  T   ++  
Sbjct: 132 IKVNSIDCIHTVLHQVLELAVEDDYLRYNPSDNALKELKRAHSSDFDTRRALTLEEQQIF 191

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------- 218
           + + +  ++ +     F  +L++G+R  +      + +                      
Sbjct: 192 ENYLADSAKYAHWLPIFTVMLWTGMRVGELTGLRWEDVDFEENTISVNHTLVYFSMGKQN 251

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQ 262
                    +       + +     + L      +                  F+N    
Sbjct: 252 GCTFAVNTPKTEAGKRAIPMLPKVREALLKEKAFQEEVGITCKAEVDGFSNFIFVNRFGN 311

Query: 263 KMNATQFSIWFKAKATKAG---------------VNKSAHGVRKFSATISADAGATAHEL 307
             +    +   K                       N S H +R    T   +AG     +
Sbjct: 312 VQHQGTLNKALKRIIRDCNYELLDNSGGKEVTTLPNFSNHSLRHTFTTRMCEAGVNIKAM 371

Query: 308 MATYGWKTVDQAE-TYTKGADRIR 330
               G   V+     Y      ++
Sbjct: 372 QDILGHADVETTLGIYADATKELK 395


>gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87]
 gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87]
          Length = 414

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 21/280 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGV 123
           TL +LI+ Y K      L   +  ++ +  + +           D   ++I  +      
Sbjct: 109 TLTYLIN-YHKEKMDKVLKYGTMKNYTTTENYLKDYLKAQHHTSDVYLKQIDYQFTLGFE 167

Query: 124 ESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKE 177
              +  P          +   + L + A   +++  NP    +    + + +       E
Sbjct: 168 SYLRVLPGLQNNGVMKHMERFKKLMRLAEHLDWIEKNPTKRFKLRFDQVDMVYLNKTELE 227

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTI 232
            ++  +      +  R  F F  Y+GL  +D+      +LQ     N     +  KT T 
Sbjct: 228 KIKNEEFEKPVLTINRDIFVFACYTGLAYADAKALNKNNLQIGVDGNKWIYTRRSKTNTA 287

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           + V L     ++L       +           +  + + + K  A +  + K  S H  R
Sbjct: 288 VRVPLLAEAERILKRYKTHPKIDGTEKLLPVYSNQKTNQYLKEIAKEVKIKKQLSFHTAR 347

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT      G     +    G   +   + Y +  D  
Sbjct: 348 HTFATTITLANGVPIETVSKLLGHTKLSTTQIYARVIDSK 387


>gi|229512585|ref|ZP_04402055.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
 gi|229350367|gb|EEO15317.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
          Length = 372

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 119/361 (32%), Gaps = 34/361 (9%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + + +T  G + Y    R   G  +         +     A+ +AL   +    +    +
Sbjct: 6   LERRKTSKGVLRYRCVVRLKKGNDVVYRESRTFGKKADAKAWGTAL--VSKLETHGLPGK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE 124
               TL+ LI  Y    H   +A     S     + +I  +       K+T  ++    +
Sbjct: 64  TPEVTLRELIIMYLNEPH---IAKGIGRSKRYGLNMLIDTELAKIQANKLTVANLVQHCK 120

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYV----------------AINPCLSVERPK 165
            R     +P +    ++ +R + + A     +                      S  R +
Sbjct: 121 DRNDAGTSPQTVSGDISYLRSVLRAAKPIFGIDVNDSVVQEAYYTLYQHNLIAKSNRRSR 180

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           R         K ++++ +   +         +F + S +R  + C+   + +     ++K
Sbjct: 181 RPETSELNRIKVELRRRQEHRAAHIPFLDILDFSILSCMRIGEVCKILWEDVDEGTRAVK 240

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
            +        E    ++ LL              +     N+   S  F+   +  G+ +
Sbjct: 241 VRDRKDPRKKEGNHMWVPLLGEAWEILNRQPKTCDRIFPYNSKSVSAGFQRVRSSLGIQD 300

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISS 341
              H +R+  A+   + G +  E+    G + ++   + YT+   +R+     + +R+  
Sbjct: 301 LRYHDLRREGASRLFEQGFSIEEVAQVTGHRNLNTLWQIYTELFPNRVHEKFNSLQRLKQ 360

Query: 342 V 342
           +
Sbjct: 361 L 361


>gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P E    P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKEKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 430

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 92/285 (32%), Gaps = 20/285 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            ++ +        +        + +        +++ +  S    +       D++ +T 
Sbjct: 118 LKDAVKKKSAVNISFSTFA---KSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTY 174

Query: 117 KHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIR 172
             +R   +  +   ++     + +  +R L   A+ Q Y+  +     +   K++     
Sbjct: 175 TFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHE 234

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSI 224
             T +++++ ++   E    R    AF F  Y+GLR SD C+    +         +   
Sbjct: 235 FLTPDELKKLETVEVEEESMRHVLDAFLFCCYTGLRYSDFCQLSPANFIKVNGKRWLHFT 294

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             +    I          + L +     +   + +       ++ +   +  A   G+ K
Sbjct: 295 SVKTGVEIRLPLHLLFESRALGILDRYPDIGSLASLPCN---SEVNKQLRKLAGLCGIKK 351

Query: 285 SA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               H  R   AT+    G     +    G  +V   + Y++   
Sbjct: 352 RITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396


>gi|209418091|ref|YP_002274120.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
 gi|169409223|gb|ACA57629.1| site-specific recombinase [Mycobacterium liflandii 128FXT]
          Length = 345

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 95/312 (30%), Gaps = 53/312 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVE-- 124
              E+         + ++  ++   F+ +                  +  + +R+     
Sbjct: 18  WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVY 77

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +  H+ +S  +  ++   L  +      +  NP  ++ RPK      + +T + +    +
Sbjct: 78  AETHSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIA 137

Query: 185 FWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGT 231
                           + R      L +GLR  +  RA +  ++ N        + K   
Sbjct: 138 AIDTDDGSARRSNWPERDRAIIFTALLTGLRADELIRANIGAIRCNADGGVLHVSGKGNK 197

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------------------KMNATQ 268
              +      +++L      +E    +  K+                       ++    
Sbjct: 198 DRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGT 257

Query: 269 FSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     KAG+N         HG+R   AT  A+A  + + LM   G +++  ++ Y
Sbjct: 258 LQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRY 317

Query: 323 TK--GADRIRLG 332
                AD  R  
Sbjct: 318 VDGAAADTRRAA 329


>gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400]
 gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400]
          Length = 444

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 116/394 (29%), Gaps = 69/394 (17%)

Query: 14  ERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------EYIN 62
             T +G I +Y+R     G  RR  +      T   A   AL  +           E + 
Sbjct: 36  RITPNGAISFYYRYTGSNGRHRRQTIGAYPAMTVSEARRRALELTQEVEHSNDTASEIVR 95

Query: 63  SPRKKPTTLKWL-----ISEYRKSAHWGSL------AVNSRISFESYFDQIIRKSGDFDY 111
              +   T         I  +    +   L      A  +                    
Sbjct: 96  KRERAHRTEHAAKVVPTIDGFIDGHYGKRLRATIKTAPRTITELRKLGKAFPGTLNRISV 155

Query: 112 RKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVER 163
           +++         +   E R   P+S  + LTS+R LF  A+R +++  NP        + 
Sbjct: 156 QQVLEWAYAELEKEVGEDRIMCPASVRRKLTSLRGLFSHAIRLDFITANPVAEVMDDNKA 215

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----------------------------- 194
              + EG   W + DM+       +  + RL                             
Sbjct: 216 LFDEGEGRDQWLRPDMEIRLRAALDAREARLRKSHAQIDSDARCDIVYGPDAAYVDHVKP 275

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPI 250
           A    L +GLR  +  +     +  +   I+ +K          V + D  +++L     
Sbjct: 276 AVLVALGTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYVPMCDEVIQVLKAWKA 335

Query: 251 GKETFFINNDKQKMNATQFSIW----FKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
              +  +       NA          ++    +A ++  + H +R   AT  A  G    
Sbjct: 336 QTCSGPVQPILVFGNALGEVRREIGPYRHVLAEAKIDSFTWHDLRHSFATRLAQHGVPIE 395

Query: 306 ELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRR 338
            +    G  ++ Q   Y     ++ R  I+   R
Sbjct: 396 RIGKWLGHSSLQQTMRYAHHCPEQQRHDIRALDR 429


>gi|71904451|ref|YP_281254.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94991383|ref|YP_599483.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|71803546|gb|AAX72899.1| DNA integration/recombination/invertion protein [Streptococcus
           pyogenes MGAS6180]
 gi|94544891|gb|ABF34939.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 387

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 121/371 (32%), Gaps = 50/371 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++       T       A           ++ 
Sbjct: 9   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITG-RTRKEVNQKAKHAQFDFLSNGSTI 67

Query: 65  RKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
           ++K    T K L   + ++     +   +  +  +     I+   G+    KIT   I+ 
Sbjct: 68  KRKVVIKTFKELSHLWLETYKLT-VKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQM 126

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKED 178
            +        +     + +R + +  V    +  N    +  P+++    + ++     D
Sbjct: 127 LINRLSKYYVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSD 186

Query: 179 MQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           ++ F          R       + ++ LL +GLR  ++C      +     +I   KT  
Sbjct: 187 LKSFLEHLETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYN 246

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFS 270
                            + +    ++ L +  + +   F                   F+
Sbjct: 247 KNLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFN 306

Query: 271 IWFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    +TY 
Sbjct: 307 ASVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 324 KGA-DRIRLGI 333
             + D+ +  +
Sbjct: 367 HLSKDKEKEAV 377


>gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium]
          Length = 316

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 75/305 (24%), Gaps = 58/305 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+   R +      +  +  ++  +  + I         ++    + + +      R+ +
Sbjct: 17  LLDRIRAALRLRHYSYRTEQAYVHWAKRYILFHDKRHPEQMGAAEVEAFLSALATERQVS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L++  + Q+   +      +    + +     T+E+  +        
Sbjct: 77  ASTQNQALAALLFLYREVLGQDLPWLENLTRAK---PREKRPVVLTREETSRLLDR--LT 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------------------ 219
               L    +  +G+R  + C+  ++ +                                
Sbjct: 132 GVHALMGRLIYGTGMRLMECCQLRIKDVDFGLREITIRSGKGGKDRVTMLPASLLEPLQA 191

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265
                +                   LA       T +        +              
Sbjct: 192 QCVQAREWHDADRQAKAPGVFMPDALARKYPRASTSWSWFWLFPASQHSTDPVSCIIRRH 251

Query: 266 ---ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +     AG+    + H +R   AT    +G     +    G   V    
Sbjct: 252 HLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTM 311

Query: 321 TYTKG 325
            YT  
Sbjct: 312 IYTHV 316


>gi|212695080|ref|ZP_03303208.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
 gi|212662396|gb|EEB22970.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855]
          Length = 407

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 83/295 (28%), Gaps = 22/295 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
            +  I  + K     +    S  S+ + ++ + R         D  +  +    I     
Sbjct: 113 FRTFIENFAKRVGV-NRTEGSLRSYRNAYNHVERFLLEKYNLSDIPFSALNRSFIDDYDL 171

Query: 125 SRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +      P + I     ++++   A+    + + P    E P R  +  R  T E++Q
Sbjct: 172 HLRTDCHLAPGTIINLTVQLKIIVGEAIADGIITVYPFAGYE-PVRPKQKKRYLTSEELQ 230

Query: 181 QFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235
           +  +      +  L  +  L   Y+G+   D      +HL   ++               
Sbjct: 231 RIMTTPLHKPKLYLIRDMFLFSCYTGIPYGDMRLLSKEHLSLADDGTWWIRSSRKKTGIE 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                    L +    ++T          + +  +   K  A    ++     H  R   
Sbjct: 291 FEIPLLDLPLCIIEKYRDTAPDGRLFPMYSNSVMNYNLKHIARLCQIDCPLVFHAGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT      G     +    G   ++  + Y K  D           +   +    
Sbjct: 351 ATEITLGHGVPLETVSKMLGHSQIETTQIYAKVTDDKINADTRI--LDERIAERF 403


>gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 397

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 92/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E     
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQELAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N   +   A  ++
Sbjct: 260 IETPKTKSGTRQVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYN 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 320 MLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
 gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium
           extorquens AM1]
          Length = 365

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 87/306 (28%), Gaps = 35/306 (11%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YR 112
               +  ++P T +  I+ + ++       A +S   + +                    
Sbjct: 37  PAETAGMREPMTSEASIALWLEALAAERGTATSSLGVYRTSARCWADFLASRGTTIEGAS 96

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           +       + +++R  + ++     T +R L ++ + +E+V  +P   V   KR      
Sbjct: 97  RADFTEYLAHLDARHLSEATIAHRRTVVRSLHRFLMAEEHVGYDPTSLVAPMKRPERLPL 156

Query: 173 PWTKEDMQQFKSFWSEGSQP--------------RLAFEFLLYSGLRCSDSCR-AGVQHL 217
             T  ++ +        ++                  FE L  SG R S++         
Sbjct: 157 VLTIAEVDRLLETAHALARDDTVGLYRQAGYARRAALFEVLYASGTRVSEAVNLPAAAIA 216

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNAT 267
                 I   K G    V L    ++ + +                   + N    +   
Sbjct: 217 PGARAMIVKGKGGKERLVMLHRRAIEAVEVWRDLAAAYGSVSDTWLFHSVRNGAAPLTRQ 276

Query: 268 QFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                 K  A  AG+      S H +R   A+     GA    +    G   +   E Y 
Sbjct: 277 SALAEIKEAAVAAGIRNPDRVSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYL 336

Query: 324 KGADRI 329
               R 
Sbjct: 337 HTDTRR 342


>gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
 gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 77/258 (29%), Gaps = 19/258 (7%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D    +IT   I           K + ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNISDIAINEITPMFITDFELYLRTTCKCSYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + I    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-LIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVSERLENVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            F  ++GL   D      ++++ +        T    T    +  +  +    + K    
Sbjct: 248 VFSCFTGLAYIDVANLTQENVRKSFDGKLWIITKRQKTNTDVNVPLLDIPKMILKKYKGK 307

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
                    ++  + + + K  A   G+ K  + H  R   AT +    G     +    
Sbjct: 308 LPNGKILPVISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G   ++  + Y +  +  
Sbjct: 368 GHTNIETTQIYARITNNK 385


>gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
 gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704]
          Length = 346

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 83/310 (26%), Gaps = 45/310 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYR-------KITTKHIRSG 122
           L+  +  Y    +    + N+  ++ +  +Q ++  +G  +          +T K + + 
Sbjct: 13  LRDFLLVYL--PNQRKASGNTVKAYRTALNQFLKYTAGRKNISVLSVTFGMVTYKTVNAY 70

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           ++        TP++    L ++R    +A       I+    +     +           
Sbjct: 71  LDWLSVEKNATPATRNNRLAALRAFVSYAAACRPEYISVASELTTIGIQKNERFAKVDYM 130

Query: 179 MQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQK 228
            ++               G + +    FL  +G R  +     +  ++ +         K
Sbjct: 131 SEEAVKALLAEPDTKTEIGVRDQFLMIFLYDTGARIQEVLDVKICDIKVDRTPTVTLHGK 190

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIWFKAK 276
                +V L    +K L                +             M      +  +  
Sbjct: 191 GKKTRSVPLMKDTVKHLQNYMKVFHPGETWLSSEWLFYVERKGNRNAMCDDTVRLRIQKY 250

Query: 277 ATKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADR 328
           A  A        +N   H  R   A      G     +    G K ++    Y     + 
Sbjct: 251 AASAREKCPDVPLNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTEA 310

Query: 329 IRLGI-KNSR 337
            R  I +   
Sbjct: 311 KRKAITEAMA 320


>gi|158425194|ref|YP_001526486.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
 gi|158332083|dbj|BAF89568.1| putative phage HP1 integrase [Azorhizobium caulinodans ORS 571]
          Length = 373

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 79/339 (23%), Gaps = 30/339 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR---------- 58
             +   R R G           R        +S            +   +          
Sbjct: 23  GRIMAVRPRGGSWQADITVKGQRY---RETFDSEAEAKAWELNARAAAVKGEPIPRPIAP 79

Query: 59  ------EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDY 111
                     S      TL  ++  ++    +     +   +      Q     G D   
Sbjct: 80  SKGTDAPRGQSREDGALTLSAVM--WKAYDKFWKGGRSDAKA-AVNIRQAEAYFGKDCPV 136

Query: 112 RKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            +I T  I    +   +++++  +  + L  +    ++A  +  +   P +  +      
Sbjct: 137 SRIDTDAIDGFVADCIAKRNSNGTVNRKLAILSKSLRYAFDRGLIPKMPKIDRKSEGVGR 196

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                  +E                   E L+ +G+R S+  R   + +     +I    
Sbjct: 197 FRWLDEDEEKALLDTFRSWGKDDHAEVIETLIDTGMRPSELYRLTPRDVDLKTGAIMIWM 256

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH- 287
           T T     +         +                 +       +       G+    H 
Sbjct: 257 TKTDNPRTVYATKRVKAILQRRIGAVTAPTEKLFPYDNFWMRHTWDRARLHLGMENDPHF 316

Query: 288 ---GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                R   A+     G   + +    G  ++     Y 
Sbjct: 317 VPYICRHTCASRLVQRGVPINVVKEWLGHTSIQMTMRYA 355


>gi|119715338|ref|YP_922303.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535999|gb|ABL80616.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 383

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 101/362 (27%), Gaps = 38/362 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +  +GK    +R   G         +             S         P+    T    
Sbjct: 7   KRANGKWRARYRDEAGNER--ARHFDRKIDAQQWLDQVTSAVVTGTYADPKAGRITFAAF 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPS 131
             E+     W   A  + ++       +         +++    + + ++        P 
Sbjct: 65  FGEWSARQVW---APGTVLAMSLAARSV--PFAGKPMKQVRRSDVETWIKQMNAAGLAPG 119

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +      ++R +F+ AV+   +  +P   V  P+ +   +        +  +       +
Sbjct: 120 TIKTRYVNVRSVFRAAVKDRVIGSDPTDGVRLPRGRRADVGMSIPAPEEVRQLMAVADER 179

Query: 192 PRLAFEFLLYSGLRCSDSCR----------------AGVQHLQNNIFSIKTQKTGTIITV 235
            +       ++GLR  ++                    VQ +      ++  K G+   V
Sbjct: 180 FQPFIALCAFAGLRLGEAAGVQLGDVDFLRRSLKVSRQVQRVNGGAIDVRAPKYGSERVV 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            L D  + +LA       T                +      W++     AG++    H 
Sbjct: 240 YLADSLVNVLAEHVGAHGTTGKARWLFAGEGDDPPHQNTIGYWWRKTLRDAGLSGIKLHD 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNSRRISSVV 343
           +R F A+    AG     +  + G         TY        DR R   ++    S   
Sbjct: 300 LRHFYASGLIAAGCDVVTVQRSLGHAKATTTLNTYAHLWPTAEDRTRKAAESIMAASLGK 359

Query: 344 DS 345
            +
Sbjct: 360 PA 361


>gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01]
 gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01]
          Length = 312

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 86/305 (28%), Gaps = 18/305 (5%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+R R            + ++      +    +S  K   TL  L+  +         +
Sbjct: 5   KGKRFR-KTFKTKGEAQRFEASCRAKVVENPDWSSRPKDCRTLAELVGLWFD---LHGHS 60

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFK 145
           +       S  D + ++  +    K+  +     R        +P +    L  +R ++ 
Sbjct: 61  LRDGERHRSKLDALAKRLRNPQGAKLDPQTYAQDRRIRLGEGASPKTLSNELGYLRAVYN 120

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLY 201
                  +     L++ +P +  E    W   +    +        +     +     L 
Sbjct: 121 ELRGLGVLDYANPLALVKPLKVQERELSWLTTEQIAERLEEIRRGCDNPHVEIIALICLA 180

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G R S++ +     L+N + +    K G + +V +       +                
Sbjct: 181 TGARWSEAEKLKPTGLRNGVITFSGTKNGKVRSVPITAELEAKIVRHWKQHGQPNSAI-- 238

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                T F         +    ++AH +R   A+     G     L    G   +     
Sbjct: 239 -----TSFRRALARTTIRLPKGQAAHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMR 293

Query: 322 YTKGA 326
           Y   A
Sbjct: 294 YAHLA 298


>gi|327467301|gb|EGF12801.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK330]
          Length = 421

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 104/374 (27%), Gaps = 72/374 (19%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAH 83
              G+++       +  +     A+  +  + E   S R+K     TL+ L  E+ KS  
Sbjct: 36  IKTGKQVT--TTITAKTLKQLDRAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYK 93

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT------------- 129
               + N+      Y  + II K GD+   KI +  I+  +                   
Sbjct: 94  TWVNSHNTLNRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNGLAKKSKESIESGIKRAD 153

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KE 177
             SA      +  ++ +F + +    +  NP  SV+ P +     +              
Sbjct: 154 KGSAKDFGAVIHKLKDIFDYGITNYGLITNPVSSVKIPPKPKSNKQRIMVLHDDSLVIWL 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +  +         + +L    LL S LR ++     +  L                    
Sbjct: 214 NYLESLDNNRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANK 273

Query: 222 ----------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   +       +            L      K  F    
Sbjct: 274 KDGTKGEVICKATPKTDAGNRSVPVPLPIIEKLRDFHHEMNLYLELHNRHRTKLIFPTIY 333

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                +  +     K +    G+     H  R   A++  +AG    EL    G K++  
Sbjct: 334 GNYMCDRNE-RTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSIST 392

Query: 319 AE-TYTKGADRIRL 331
              TY + A + +L
Sbjct: 393 TMDTYAELAPQRKL 406


>gi|298695097|gb|ADI98319.1| putative integrase [Staphylococcus aureus subsp. aureus ED133]
          Length = 349

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 16/334 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +TK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   ITKRKNKTSTSWQYDLKHPSFKSGKKRKSGFKTKAEASNAAQQLIRDLEDGNNIEDNKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR-- 126
             K   S++    +   L+      ++          G +   + IT    +  +     
Sbjct: 65  -FKEYYSDWINIKNKKQLSSKQFYWYKRSIKLFSEFFGENMLVKNITRSEYQRFLNKYAQ 123

Query: 127 KHTPSSAIQFLTSMRVLFK---WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            HT  +  +    +    K   +    +             K K E  +  T +D     
Sbjct: 124 GHTDETVRKVHGCLARCIKDALYDGYFKKDPTYDVNIKGTEKSKDEKFKYITIKDYLNLL 183

Query: 184 SFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            ++ +  +    F ++L  +G R SD      + L      +    T T  +    +   
Sbjct: 184 EYFKKRDEESYIFLYILGITGARYSDVINMTYKDLNKANGIVHLPGTKTKNSKRDVEVNP 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           + +        +    IN     ++ T  S  FK      G+N    + + +R    +  
Sbjct: 244 RDIMRINSKLARLPRRINGKLFSVSHTSVSKSFKKAKEVIGLNNDNITPYSLRHTHTSYL 303

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
              G     +    G  T+ Q   TY+   +  +
Sbjct: 304 LSKGIPIEYISKRLGHSTISQTLNTYSHLLEEHK 337


>gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4]
 gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4]
          Length = 381

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/351 (11%), Positives = 104/351 (29%), Gaps = 45/351 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
              F+  + ++ +               A      K          PT+LK  + ++ K 
Sbjct: 14  RVRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEITPTSLKHYLRDWLKL 73

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
               +++ N+ I  E      +I    + + +++     +  + S      S  + +  +
Sbjct: 74  FKQDNVSKNTYILHERNIEKHLIPYFQNINLKELKPMMYQKFINSLTDQGYS-KRTVQII 132

Query: 141 RVLFKWAVR--------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 A++        +        +S    K +       +++     K+ +      
Sbjct: 133 HGTMNNAMKKAVSLKKIESNPCEEVVISNRNNKERDGLKYMRSEDIPLFLKASYQYNYIY 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIIT 234
            + F+ LL +G+R  ++     + +     +I                    +   +  T
Sbjct: 193 YIFFKVLLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKEELFGDTKTFTSKRT 252

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQFSIWFKAKATK 279
           + +P      L      +    +       +                +     F     K
Sbjct: 253 IMIPKNLADELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKK 312

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           A + +   H +R   A +  ++GA+   +    G K+++     Y+  +D+
Sbjct: 313 ANLPRLEIHSLRHTHAVLLLESGASMKFIQDRLGHKSIEITSNVYSHISDK 363


>gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b]
 gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b]
          Length = 287

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 16/280 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKI-TTKHIRSGVESRK-- 127
           K  + ++         + N+       F +  +  G +       T + +   + + +  
Sbjct: 6   KDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYITALRSE 65

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +   +L+++R L+ WA+ ++ V  NP   +     +       T  D+ +     
Sbjct: 66  GCQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHRVIDAI 125

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
                 R      L++G+R ++  +  +  +  N     I   KTG    V L D    +
Sbjct: 126 DV-PLYRTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVPLNDVTHAM 184

Query: 245 LAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATK-AGVNKSAHGVRKFSATIS 297
           +      +     +              T  +   K  A    G + ++H +R    +  
Sbjct: 185 MTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAFTSHL 244

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            D G     L    G         Y +   D +R  ++  
Sbjct: 245 YDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERL 284


>gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 308

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           K  T++ +   + KS     +  ++  ++     + ++   GD +   ++ K ++  V  
Sbjct: 2   KAKTIREIALAW-KSEKQRYVKQSTYAAYVLILENHLLSSFGDCEV--LSEKLVQEFVLQ 58

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +      +    L  +R++ K+ V+  ++                 I   T    ++ 
Sbjct: 59  KLNAGLCIKTVKDMLIVLRMVMKFGVKNGWMNYCEWDIKYPTTEGNREIEVLTVAQHKKI 118

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             F  +    R L     L +GLR  + C      +  +  +I   +T   I +   +  
Sbjct: 119 LDFIRQNFTFRNLGIYISLTTGLRIGEICGLMWADINTDTGTITVNRTIERIYIIEGERK 178

Query: 242 MKLLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKA 275
              L +     +                                         +  +F  
Sbjct: 179 HTELVINTPKTKNSCREIPMNKELLAMVKPLKKVVNASFYVLTNEEKPTEPRTYRNYFHR 238

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLG 332
                 + +   HG+R   AT   ++      +    G   +      Y     D+ +  
Sbjct: 239 LMGHLDIPRLKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMDQKKRC 298

Query: 333 IKNSRR 338
           I    +
Sbjct: 299 ITKMLK 304


>gi|228968096|ref|ZP_04129101.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791587|gb|EEM39184.1| hypothetical protein bthur0004_48810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 347

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 102/352 (28%), Gaps = 39/352 (11%)

Query: 11  VTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V K++ R     +  R        + +L    +         A+         I      
Sbjct: 3   VYKDKERK-TWYFKVRYKDMYGRNKQKLKRGFKKRGD-----AILAEAEFVASIKDAFTD 56

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI---RSGV 123
             T   +      + ++ +    +     + ++  I  + G    + I T+ +   +  +
Sbjct: 57  EVTFDEVFEH---NINFKTYKPKTIRRRTNEYNLHIKPRFGHIKVKDINTQQVLDFQKYL 113

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S   +P SA    ++ +VL   A R   +  +P L V    R  + I    +ED  +  
Sbjct: 114 SSSLSSPESARTVYSNFKVLMNHAKRFYNLRYDPTLQVPTMPRGKKRIDFIKREDFDKRV 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG 240
             ++      L      Y+GLR  ++       +      I   K+      +   +   
Sbjct: 174 QEFNMHYYKELTILM-FYTGLRVGEALALKWIDIDLAEQQINVNKSWSLNERVLTSVKTA 232

Query: 241 FMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             + +   P                        +     +    ++ + K    +     
Sbjct: 233 ASEAIVPIPKLLVGMLGGIKKESAEKTYGFDENHFVFCGVTPYHYNHYHKKY-KEVFPEL 291

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK-GADRIRLGIK 334
             H +R   A    + G   + +      + +   A+TY     +R +  + 
Sbjct: 292 RIHSLRHSYAAYLINKGVDIYLVKELMRHENIKETADTYGHLYIERKQKAMS 343


>gi|17233092|ref|NP_490182.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135614|dbj|BAB78160.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 342

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 100/307 (32%), Gaps = 35/307 (11%)

Query: 54  STPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
           +  K +  ++    PT ++W+ + E+ +S    +LA NSR  +E    + +       Y 
Sbjct: 24  AIQKSKSRSAKIAAPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLG-WTQLHYH 79

Query: 113 KITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLS 160
           ++  +H+    E  +           + +S    + +++  F W        +  NP L 
Sbjct: 80  ELRPRHLGLYKEYLRDEVKTDSGKPLSKASINAGVAALKSFFNWMCYTYPEIITTNPTLG 139

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHL 217
           ++  K      +  T E M++  S       ++ R  A   +L  GLR  +  +  V   
Sbjct: 140 IKLEKVPLPPAQSLTDEQMERVWSALELLGETKERDTALVHILSHGLRAGEIVQLNVGSF 199

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQK 263
              +  +   KT     V L      +L                      +   +    +
Sbjct: 200 DGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRQQQGEELNSLTPLMISHHASYKGDR 259

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           ++        +     AG+ +   H  R   AT     G          G ++      Y
Sbjct: 260 LSYHGIYFAVEKIGEFAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRY 319

Query: 323 TKGADRI 329
           T  +++ 
Sbjct: 320 TLRSEQE 326


>gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
 gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032]
          Length = 415

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 95/330 (28%), Gaps = 53/330 (16%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
           A+ G     E +++ +           +Y  S        N+R S+E+        +G  
Sbjct: 73  AVKGFVNPIESLDTFKTHKGAASDEFKKYLASFLAEQNTKNTRRSYENQVKLFFTWAG-K 131

Query: 110 DYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           D  +I  + I +  +  +    H  S+      ++   FK+  R+     NP        
Sbjct: 132 DLAEIDIQAILAYRDHLRNEKRHKDSTIWNKFVALNRFFKFVERENRKFKNPIFFKGLKL 191

Query: 166 RKTEGIRPW--------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              +  + +        ++  ++Q     + G +       +L  GLR ++      ++L
Sbjct: 192 IFPKKDKGYYSVLSTAESERLLKQVNKRTAIGKRDYALLLLILVYGLRANEVAGLRHKNL 251

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL-------------------------------- 245
           +      + +        +  +     +                                
Sbjct: 252 ERERVKGQQKAWIVDRKGKFQNRPKTAIILSGRALRAFDDWLDTVGRQGVTVDGETPVFL 311

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATIS 297
                    +     +   Q ++        K    KA +++     S H +R  + T+ 
Sbjct: 312 PFIYDRNNQELVIRRDRKHQPLSVKAVENVVKKYLVKAKISREEATLSPHALRHTAFTML 371

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A  G    ++    G + ++    Y   A 
Sbjct: 372 AQEGVKLQDIQKLAGHQDINTTMIYVHAAQ 401


>gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 349

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 96/325 (29%), Gaps = 30/325 (9%)

Query: 19  GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK +   Y     GRR+R  +  +   + A+          + ++        +LK +++
Sbjct: 9   GKWLCECYPAGRSGRRVRKQFATKGEAM-AFERHTMDEAAAKPWLGD-VADRRSLKDIVN 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------- 126
            + K  H  SL+      +E     I+   G+     +T K      + R          
Sbjct: 67  LWYK-LHGISLSAG-EHVYEKLL-LIVDALGNPLATSLTPKMFAHYRDKRLTGEIYFSEK 123

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                +P +     + +   F   +R  E++  NP  ++ +     + +   T + + + 
Sbjct: 124 WKNGASPVTVNLEQSYLSGAFSELIRLGEWLQPNPLENMRKFTIAEKEMAWLTHDQIAEL 183

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                  ++   L  +  L +G R  ++       +     +    K     ++ +    
Sbjct: 184 LYDCQRQNKLLTLVVKICLSTGARWREAVNLTRSQVTKYRITFTRTKGKKNRSIPISKEL 243

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            + +      K                F+      +      +  H +R   A     +G
Sbjct: 244 YEEITALKGFKFFDDYYFQ--------FASVMDKTSIILPRGQLTHVLRHTFAAHFMMSG 295

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                L    G   +     Y   A
Sbjct: 296 GNILALQKILGHHDIKMTMRYAHLA 320


>gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259]
 gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 471

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 101/288 (35%), Gaps = 21/288 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 178 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 237

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 238 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 296

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 297 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 356

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      N K        +     +A A + G+ K  + H  R  +AT   
Sbjct: 357 LDIANRIIGKYRGLCENGKIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 416

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G     + +  G K++   + Y K         ++ + +++ ++S
Sbjct: 417 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMKNLAARLNS 462


>gi|282600876|ref|ZP_05979981.2| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
 gi|282571222|gb|EFB76757.1| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM
           15176]
          Length = 322

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 95/288 (32%), Gaps = 14/288 (4%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A+         + +P ++  TL  +   +    H+  +  +++ S+++ + +     G 
Sbjct: 18  EAVRELDAVNARLIAPDRQMYTLADVYDRW-SVLHFPKITKSAQQSYKNAYRKAEPLQGR 76

Query: 109 F--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              D +    + I + + + K + S   +       L ++A+RQ+ +  N    +  P  
Sbjct: 77  RMMDLKTEDYQEIITDMAAHKASRSLCEKQRQLFSQLCQYAMRQDIINTNYAQGLVLPSA 136

Query: 167 KTEGIRPWTKED---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                R  ++ +   +         G   R+A   L+Y+G+R ++   A   ++      
Sbjct: 137 SAPQTRVLSEAEVEAIWSMADDKRLGETARIA-LVLIYTGMRLNELLTARRTNVHLEAGY 195

Query: 224 IKTQKTG---TIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKAT 278
           +   +         + L       +     G +T F   +      +       F +   
Sbjct: 196 LVGGEKTEAGRDRVIPLHTDVQPFIREWLNGNDTDFLIPSKYGIPRDHNNVRKSFGSLMK 255

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           K  +     H  R  +AT    +G     +    G   +      YT 
Sbjct: 256 KLEIQGVKPHTCRHTAATKMMASGLAPEVVKQILGHADITTTLNIYTH 303


>gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii
           DSM 18315]
          Length = 406

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSIENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 411

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 93/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +++ +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKATLSKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   + K      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKRIVDKYRGLCEDGRIFPVPHYMTCLYGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 390

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 102/367 (27%), Gaps = 51/367 (13%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST--------PKREYINSPRKKPTT 70
           G     F    G+R R     +     + +  +             K         K  T
Sbjct: 22  GYWYLDFYLPSGQRKR--GTTKEKASQSGLRIVKKQIIPDIVVGLGKEPEKCKDEYKEWT 79

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESR- 126
           L     EY +      L  ++   + +      QI+   G      +T   +        
Sbjct: 80  LNEFAQEYFE-LQKTQLREHTL--YRNICHYRKQILPYFGHRLLTTLTPLDLEKWQNQLL 136

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+  S+  ++ + +  +FK A   + +  NP   V  PK     +     +D       
Sbjct: 137 SKYKHSTVQRYRSILYSMFKKAFINDIIPRNPLEKVTAPKMLPNAMEEEESQDPFTQDEI 196

Query: 186 WSEGSQPRLAFEF----LLYSGLRCSDSCRAGVQHLQNNIFS------------------ 223
            +  S            +L +G+R  +        +  +                     
Sbjct: 197 NTIMSHATGYMANFIKIMLSTGMRPGELVALTWTDIDFSRKIISVNKTRLRSPRSKAVVD 256

Query: 224 -IKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  G       P      L         K  F   +++   N     + F+    +
Sbjct: 257 GPVKTNAGKRSIDLFPATEKAFLEQQELTGWQKYIFLNPSNRPFYNHDVIGVNFRNILKR 316

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT---KGADRIRLGIK 334
           + + +   + +R   A+     GA    +  T G K V    + YT   K  D +RL  +
Sbjct: 317 SSIKERVLYNLRHTFASQLISNGADIVYVSKTLGHKDVSITLKIYTKFIKEEDAVRL--E 374

Query: 335 NSRRISS 341
             ++I  
Sbjct: 375 KMKKIDK 381


>gi|256855105|ref|ZP_05560466.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256709618|gb|EEU24665.1| site-specific recombinase [Enterococcus faecalis T8]
          Length = 373

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 103/347 (29%), Gaps = 42/347 (12%)

Query: 17  RHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G   YYF+ G     G+  +       T   A   A T +  K +   S      T K
Sbjct: 13  KTGTYSYYFKAGVDLATGKPFQKRKRGFPT-AKAAHEARTKALQKIQDRGSVSYTQMTFK 71

Query: 73  WLISE-YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
             +   Y     +                ++ I++ G      IT + I           
Sbjct: 72  QFMEIIYI--PDFNQRTAKDIEGRNRMIFNEFIQRFGSKKPNNITIQDITIYKNELIQKY 129

Query: 131 SSA--IQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           SS+   + +  ++ +FK A     +   N    V   K +   +  WTK + +QF +   
Sbjct: 130 SSSYGRRKMAMLKTIFKSAQNYGLIHGDNVMEKVPLIKIEKAEVHYWTKSEFEQFINSLD 189

Query: 188 EGSQP----RLAFEFLLYSGLRC------------------SDSCRAGVQHLQNNIFSIK 225
             S              ++G+R                   S        ++ N   S K
Sbjct: 190 TSSYMQQFIYTTIWLYFFTGMRVNEGTALYWEDVDFGKKLLSIHHNLHYLNIDNWERSTK 249

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKA 280
            +   +  T+ L D  + +L      ++           D        F+   K  + KA
Sbjct: 250 LKTESSKRTIGLDDNTLDVLQKWKERQQKHSKIKFVLSYDGNPFPKRSFAYQLKKYSEKA 309

Query: 281 GVNK-SAHGVRKFSATISADA-GATAHELMATYGWKTVDQA-ETYTK 324
           GV      G+R   A++  +    T   +    G   V      Y+ 
Sbjct: 310 GVPYIKPKGLRHSHASLLINEWNTTPLAIQKRLGHSDVQTTLSVYSH 356


>gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
 gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM
           17241]
          Length = 354

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 100/298 (33%), Gaps = 20/298 (6%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
            A  +    +  +      P     TL+ +   ++ S  +  L    +  + + + ++  
Sbjct: 48  AATRAEAQEALEEIVKRGIPMGFNDTLEEVYERWKDSH-FRDLGEKGKEGYLNAWRRMEP 106

Query: 105 --KSGDFDYRKITTKHIRSGVESRKHTPSSAI--------QFLTSMRVLFKWAVRQEYVA 154
             +    D + I  + I      +   P++A         +       L K A+++E + 
Sbjct: 107 IKEIRMRDIKTIDFQRIVDTAYKKSSDPAAAKPLSRSGKEKIKQLASQLCKQAMQEELIN 166

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N    ++  +   +    +++ED+Q+  +   + S        LLYSG+R ++  +   
Sbjct: 167 RNYGEYIKLDQEIKKEKNIFSREDIQKLFAADDQQSAQ--IILVLLYSGMRINELFQMLQ 224

Query: 215 QHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +++  +   +    KT+     I       +  +        +    N     ++   F 
Sbjct: 225 KNVYLDEHYMIGGEKTEAGRNRIIPIHDKIYPYIKNWLETPGKYLISNRSGAPIDLNNFR 284

Query: 271 IW-FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              +       G+  K+ H  R   A++ A +GA    L    G        E Y   
Sbjct: 285 TRDYYPLLESLGIERKNPHCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHA 342


>gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 82/260 (31%), Gaps = 12/260 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            + +++K     + + N+   +    +Q          R +    +        + P + 
Sbjct: 12  ALDQFQKYLMTHNKSPNTICVYRYAVEQFYHLYPQLTPRNLQLYKVYLLE---HYRPQTV 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + ++    ++  RQ  +     + +++     + I     E +++  +   E +   
Sbjct: 69  NLRIRALNCYMEY--RQASITPVSMIKIQQKTYLDKIISQADYEYLKRCLAESEEYTYYF 126

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMTPI 250
           +       +G+R S+     ++ +      I ++                  + LA T  
Sbjct: 127 IVRLITA-TGVRISELITFQIEDVHTGHKDIYSKGNKMRRVYIPRGLVRELQEWLAATHR 185

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                F+N     ++ +     FK  A + G++      H  R   A    +       L
Sbjct: 186 STGPLFLNRFHSPISPSGIRAQFKVFAARYGLDPEVVYPHSFRHRFAKNFIEKCGDISLL 245

Query: 308 MATYGWKTVDQAETYTKGAD 327
               G ++++    Y + + 
Sbjct: 246 SDLLGHESIETTRIYLRRSS 265


>gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
 gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi
           ATCC 33707]
          Length = 346

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 58/332 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSG 122
           L+   +E+         + ++  ++   F  I     +             IT   ++  
Sbjct: 13  LEAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQA 72

Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             S   T   +S  +  ++   L  +    + +  NP  +V RPK      +    + + 
Sbjct: 73  FASFAATHEVASIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAVT 132

Query: 181 QFKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------- 223
           +      E         G +        L +G+R S+     +  +++            
Sbjct: 133 RLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARVI 192

Query: 224 IKTQKTGTIITVELPDGFMKLL-------------------------AMTPIGKETFFIN 258
               K             +  L                                +  F+ 
Sbjct: 193 RVRGKGSKERVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPLFVG 252

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYG 312
            D  ++              +AG+N         H  R   AT  AD   +   LM   G
Sbjct: 253 ADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRMLG 312

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            ++++  + YT+GA            +   +D
Sbjct: 313 HESMNTTQVYTEGAGTGVREAAARNPLYRFLD 344


>gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1]
 gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1]
          Length = 414

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 100/355 (28%), Gaps = 54/355 (15%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
                 Y+         R             +W ++ Y       SL++ ++  +++   
Sbjct: 63  KKMKEKYLKRKARKNIIRNTEIMNLSVYEFFEWALNIYL--LKNPSLSIVTKNGYKNEVK 120

Query: 101 QIIRK--SGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           ++          + ++T K I   +E      K  PS+  +    +  L+K A+++E V 
Sbjct: 121 KMKNYAPFKLISFAELTKKDIEHYLEYLFIIEKLAPSTVAKIRVVLGTLYKVAIQRELVE 180

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N     E  K K    +  +KE  + F     E S+ +L F  L++ GLR S+     +
Sbjct: 181 YNLIYKTEPIKVKKAKRKALSKEKAKIFLEAL-ENSEYKLEFYLLIFLGLRKSELLGITI 239

Query: 215 QHLQNN---------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            ++                         +             + +L      +      +
Sbjct: 240 DNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLANRKFPLIPILTDFLAERINRIKED 299

Query: 260 DKQKMNATQF--------------------------SIWFKAKATKAGVNK-SAHGVRKF 292
                N                              +        K G+   S H +R  
Sbjct: 300 KTFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELDKILKKIGLEHLSVHELRHT 359

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
            AT+    G    ++    G   +      Y    +      +   ++   ++ +
Sbjct: 360 CATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN--FEVIGKLEKALEKN 412


>gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
 gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC
           29799]
          Length = 397

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/377 (11%), Positives = 91/377 (24%), Gaps = 51/377 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +            P       +    +               K 
Sbjct: 24  RYAYKYTDACGKTQFVYAWKLVP--TDKTPTGKRDDISLREKVKEILRDLNDGIDTIGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRK 127
            T+  L +   +++H  ++  ++    E     +     G      +     +       
Sbjct: 82  MTVCQLYAR--QNSHRKNVKRSTEKGREYLMSVLKSDPLGSRSIDTVKLSDAKEWAIRMS 139

Query: 128 HTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQF 182
                  +   +  S++  F  A+  + +  NP         +  TE     T+E   + 
Sbjct: 140 EKGYAYKTINNWKRSLKAAFYTAIEDDCIRKNPFNFTMDTVLEDDTEEKVALTQEQEDRL 199

Query: 183 KSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            +F       R   + +   L +GLR S+ C   V     N       +           
Sbjct: 200 LAFAGSDPVYRKYCDEIIVLLGTGLRVSELCGLTVDLDFENRRIDVDHQLLRDSELGYYV 259

Query: 233 ---------ITVELPDGFMKLLA----------------MTPIGKETFFINNDKQKMNAT 267
                      + + +   + L                  T                  +
Sbjct: 260 DAPKTKNGVRQIPMSEKVDQALKRAVKNRGKAAPVNIGGYTNFLFLNQSGLPKTASCYES 319

Query: 268 QFSIWFKAKAT-----KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            F    +         +A  N + H +R    T  A AG    +L    G   +     Y
Sbjct: 320 MFQGLVRKYNKHHKPDEALPNITPHTMRHTFCTRLAQAGMNPKDLQYIMGHSNITMTLNY 379

Query: 323 TKGADRIRLGIKNSRRI 339
              AD          ++
Sbjct: 380 YAHADYA-SAKAAMDKL 395


>gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
 gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp.
           3_1_40A]
          Length = 401

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 4/220 (1%)

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             + ++  + ++A  +    + +   A R+  +  N    ++         +  + E+++
Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +  +        R A  F   SGLR SD      +++Q              +  +    
Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGG-HYLDFKCVKTQRQTQ 270

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                    + +            N T      +    + G+NK  + H  R   A++  
Sbjct: 271 VPIGDDAYELIQPQTTDKYIFSGFNRTMTYRVMQDWIKECGINKHITFHCFRHTYASLQL 330

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSR 337
           + G   + +      K V   + Y   AD   R      R
Sbjct: 331 ELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIR 370


>gi|319764260|ref|YP_004128197.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317118821|gb|ADV01310.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 350

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 96/324 (29%), Gaps = 23/324 (7%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77
           +     R+              T   A+   + G   + +   +        T+  LI  
Sbjct: 10  RWRALVRRKGFP-SYCKTFAVKTDAEAWARQIEGDMDRGQAPRAAAVVGRVLTVADLIDA 68

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
           YRK       +A  S   +      + R  G+ D  ++T   +     +R      P + 
Sbjct: 69  YRKMRDASRPVADTSSEHY--VLRTLRRALGEHDATRMTPDDLVGFARARAEDGAGPYTV 126

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP----------KRKTEGIRPWTKEDMQQFK 183
              L+ +    ++A     V +   ++  RP            K E      +      +
Sbjct: 127 NMELSKLGTAMRYAALALKVKVPDVVAEARPLLAHLALVGGGGKRERRPTEDELHHLLLR 186

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                G+    A  F + + +R  +        +      +  +        +  D ++ 
Sbjct: 187 LESGFGAVYADAVRFAVLTAMRRGEIVALLHDDVDRIKKLVLVRDRKDPRAKKGNDQWVP 246

Query: 244 LLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
           LL         +     +     ++    S +FKA +   G+ +   H +R    +   +
Sbjct: 247 LLGDALAIIDRQPRIEGDGRIFPVHPQTLSKYFKAASDALGIADLHFHDLRHEGTSRLFE 306

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
            G    E+    G K+    + YT
Sbjct: 307 QGFAVQEVALVTGHKSWTHLKRYT 330


>gi|262043692|ref|ZP_06016801.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259039030|gb|EEW40192.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 302

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 93/293 (31%), Gaps = 29/293 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L+    + E +   +    T   L   + KSA++  L   ++  +  +  +++   G   
Sbjct: 3   LSQLWARYEALIDEQTNVMTFSKLWGLFLKSAYYLELKPRTQKDYLQHQKKLLAVFGKIT 62

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             KI T+ IR  ++ R   + + A   ++SM  +F+W   +  V  NPC  V + K    
Sbjct: 63  ADKIKTEDIRMFMDRRGLQSKTQANHEMSSMSRVFRWGFERGMVKGNPCQGVSKFKAVAR 122

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           G      E    +K         R A E       R +D      + +      I+  K 
Sbjct: 123 GRYITDAEYEAIYKEA---DDVVRTAMEIAYLCAARLADVLGMQWRQVTPEGIFIQQGKN 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAG-- 281
                 +  D   +   +               + +     +   FS  ++    KA   
Sbjct: 180 NVSQIKQWTDRLKQAFELAKTFSNSGNPGAFVLMGSHGSGFSKRGFSHRWEEARHKASVK 239

Query: 282 ----VNKSAHGVRKFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
               ++ + H +           G +       +     G KT  Q   Y + 
Sbjct: 240 LGYVLDCTFHDL--------KAKGISDYEGSSRDKQLFSGHKTESQVLIYDRK 284


>gi|297570097|ref|YP_003691441.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926012|gb|ADH86822.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 409

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 26/358 (7%)

Query: 14  ERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---------YI 61
                G   +   Y   G  + + L +    T   A            +           
Sbjct: 29  RIMPSGAKTWLFIYTFDGKRKEMNLGHYPAVTLEAARRKYRAAFDLFEQGNDPVAMHLEK 88

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R++   L  L+ EY    H      +           ++   G      I+ + +  
Sbjct: 89  KEERRRTPFLSDLVDEYIN-KHAMRFKRSWAKDQAILNRDVVPAWGQRKAVDISKRDVIL 147

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +E    + +P  A      +R +F +AV +E + I+PC  V+ P  K    R  ++E++
Sbjct: 148 LLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILEISPCTGVKMPAPKMARDRVLSEEEI 207

Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234
                         + + A + +L +  R  +        ++   ++I     K G    
Sbjct: 208 RVLWSGLERAKISHEVQRAIKLILVTAQRPGEVMGMDFSEIEGRWWTIPADRAKNGKAHR 267

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291
           V L D  ++L+     G       + +        ++    +  K  +     + H +R+
Sbjct: 268 VYLTDTALELIGENTGGFVFPSPRHRENPRPIGSNAMTVAHRRNKDKIPLEDFTPHDLRR 327

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNS-RRISSVVDSD 346
            +AT  A+ G     + A      +     Y   +     +  ++   RR+  ++ ++
Sbjct: 328 TAATFMAEMGTMDEVIDAILNHSKMGVIRVYNQYRYDTEKQATLEAWERRLQRILGAE 385


>gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 355

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/313 (9%), Positives = 82/313 (26%), Gaps = 46/313 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------------K 117
           +++  ++ Y       + + +++ ++       +       + + T              
Sbjct: 17  SIREWLTMYI--PQVRANSPHTQRAYTITLKLYVEFLESEKFVRHTRLTAQCFDTNVIQD 74

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +      R  + S+    L  +R    +        +     +   KR     +   + 
Sbjct: 75  WLLWLKNVRNCSNSTCNHRLACLRSFIIYLGHSNPRFLEQENKISEVKRMKTVRKNIVEI 134

Query: 178 DMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIK 225
             +  K            G +    F  +  +  R ++     ++ +Q      +     
Sbjct: 135 TKKAMKALFSSIDQTMVTGKRDLALFTLMYSTATRINEILSLRIRDIQLHEKNIHNCIYV 194

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFK 274
             K     T+ L    + ++                       N +K K+     S   K
Sbjct: 195 MGKGSKRRTIPLMKDCVNIIKSYIRQFHGDKPTENDLLFFSSHNGNKVKLTQEAISKRLK 254

Query: 275 AKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             A KA         +   H +R   AT   + G     +    G + +     Y   ++
Sbjct: 255 IYARKANGICAEMPPDIHCHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSN 314

Query: 328 RIRLGIKNSRRIS 340
             +   +    + 
Sbjct: 315 AQK--SEALASLE 325


>gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 420

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQ---IIRKSGDFD---YRKITTKHIRSGVESRKHTPS----SAIQ 135
             +  +   +++   +    + +  + D   + +++   IR+     K        + ++
Sbjct: 137 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIRAFDVFLKTEAGLCRNTIVR 196

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  ++        T  ++Q   +   +  +  L 
Sbjct: 197 YMKCLKKITNMAIAKEWMRKDPFYGYKM-EQDETDPVFLTNNELQAIMNREFDIPRLELV 255

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGF------- 241
              F F  ++GL  +D      +HL+ +       + G                      
Sbjct: 256 KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLPVP 315

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + +L                  +   + + + K  A   G+ K  + H  R   AT    
Sbjct: 316 LAILKKYESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATTVTL 375

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
                  E+ A  G  +    + Y +  DR
Sbjct: 376 ANNVPLQEVSAMLGHASTRMTQHYARVMDR 405


>gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606]
 gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)]
          Length = 314

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 76/306 (24%), Gaps = 27/306 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                     A+       T  + ++        TLK +I  + K  H  SL    +  +
Sbjct: 3   KQFATKGEALAFERHTMEETEAKPWLGESVD-RRTLKDVIELWFK-LHGKSLTAG-QHVY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRV 142
           +     ++   G+     +T+K      + R               +P +     + +  
Sbjct: 60  DKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSS 118

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLL 200
           +F    R    +    L   R     E    W   +         +   P LA      L
Sbjct: 119 VFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++       +     +    K     ++ +     + +               
Sbjct: 179 STGARWREAINLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ 238

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   F    +  +      +  H +R   A     +G     L    G   +    
Sbjct: 239 --------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTM 290

Query: 321 TYTKGA 326
            Y   A
Sbjct: 291 RYAHLA 296


>gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 416

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            +++K       + ++   + + ++ +           D  +R++T   IR      ++ 
Sbjct: 122 EDFKKLVDKEERSQSTYNKYITVYNHLTTFIKERYHRDDMAFRELTGDFIREFDFYLRYD 181

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             S    +      +  L + A+++  +  NP    E    +T+      ++  +     
Sbjct: 182 LQSTHNTVWVYTMPVLSLVELAIKKGLIRDNPFQDYEINMEETDRGYILKEDVEKLMMCA 241

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   +   F F  ++GL  +D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PPHPRYELVKDLFIFSCFTGLAYADIKKLTRNNIQSFFDGHQWIISRRKKSDIASNVRLM 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K      N+      T  +          KA +      + H  R    T+ 
Sbjct: 302 EIPKRIIEKYLGSTRNEFIFPVPTNVTCNTHIGKLIEKAKIITEQKVTFHTARHTFGTMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 329

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 84/311 (27%), Gaps = 38/311 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR  +  +   I      L  +  KR            L  L+  + ++     LA
Sbjct: 21  TGKRIRKVFTTKGEAISFERYVLEQTEDKRL-----------LSELVDIWFRTHGIT-LA 68

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTK------------HIRSGVESRKHTPSSAIQF 136
                S +       +  G+    +   K             I      +   P +    
Sbjct: 69  DG--ESRKQMMLFGCQAMGEPLATEFNAKLFSVYREKQLSGKITRADRIKSVAPRTTNLE 126

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--- 193
           L   R +F    R      +  L   R  R  E    +  ++         + S+ +   
Sbjct: 127 LAYFRAMFNELHRLGEWKDDNPLKNIRSFRTDESEMAFLSDEQIIQLLEECDKSKAKDLS 186

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           +  +  L +G R S++       +     +    K     TV +       +        
Sbjct: 187 IIVKIALSTGARWSEAEGLTSSQVTPYKITFTKIKGKRNRTVPISKVLYDEIPKKRGALF 246

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
           T            + F +  K    +    +S+H +R   A+     G     L    G 
Sbjct: 247 TPC---------YSAFRMAMKRTGIELPHRQSSHVLRHTFASHFMMNGGNILVLQRILGH 297

Query: 314 KTVDQAETYTK 324
             +     Y+ 
Sbjct: 298 TDIKMTMRYSH 308


>gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxidans DMS010]
 gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein
           [Methylophaga thiooxydans DMS010]
          Length = 409

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 97/351 (27%), Gaps = 54/351 (15%)

Query: 25  FRKGHGRRIR--------LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWL 74
           +    GRR+R        L  P          + +      +    + R       L   
Sbjct: 50  YTAPDGRRLRYTMGNFPALSVPAARKMAETLYAQVKLGRDIQREKQTARDVKPVPKLGDF 109

Query: 75  I-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130
           I   Y         A  +++     F+Q  +   +    K+T   I S    R     + 
Sbjct: 110 ISDTYLPWFIAHHKAPKAKLP----FNQF-KHLFNKRLDKVTAWDIESWRSKRHKDGLSA 164

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S++ +++ +++ +F  AV  E +  NP   V++ K     I  +   D ++         
Sbjct: 165 STSNRYIGTLKAMFNRAVEWEVIEQNPITKVKKQKSDNRAIIRYLSPDEEERLRASLRSR 224

Query: 191 QPRLAFEFLLY----------------------------SGLRCSDSCRAGVQHLQNNIF 222
             RL      Y                            +G+R  +      Q +  N  
Sbjct: 225 DRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLLMNTGMRRGEMFNLRWQDVDLNNK 284

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAK 276
            I      +       + L      +L M     +    +    K           +K  
Sbjct: 285 RITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRNAGHVFVGKNGKRFTNIDKAWKVL 344

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A + +   H +R   A+    AG   + +    G   +     Y   A
Sbjct: 345 LRDAKIHDFRLHDLRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHLA 395


>gi|149925456|ref|ZP_01913720.1| Phage integrase [Limnobacter sp. MED105]
 gi|149825573|gb|EDM84781.1| Phage integrase [Limnobacter sp. MED105]
          Length = 441

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 87/300 (29%), Gaps = 34/300 (11%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKIT 115
           ++           T      ++ +         N   +        +I + G+     IT
Sbjct: 53  RQSVEKISTAGHPTFTEFAQKFIEENESLWKRSN-IRTKRDILEKWLIPQFGNRVISSIT 111

Query: 116 TKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            + +          P          S     +TS++ +   A  +      P  +++R +
Sbjct: 112 KQDLLEFRSVLAKAPGKKPETTMSASRINHVMTSVKQVLDEAADRFN-FTTPYQNIKRMR 170

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------ 219
            K   + P+T E+++    +  E  +    F    ++G+R  +      +++        
Sbjct: 171 IKKTDVTPFTIEEVEMIIKYCREDFRNY--FTVKFFTGMRPGEIHGLKWKYIDFEKRLVT 228

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----NATQ 268
                 + +    +   +   +++     + L                        N   
Sbjct: 229 IRETIVDDYEETPKTADSNRDIQMAPQVYEALKTQWEVTGKKSPFVFANGNGGPLTNRNM 288

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            +  +       G+  ++ +  R   AT+   AG +   +    G  + +   + Y++  
Sbjct: 289 SNRVWYPMLRSLGLKLRTPYQTRHTFATLMLAAGESPEWIAFQMGHSSTEMLFKVYSRYV 348


>gi|261495697|ref|ZP_05992141.1| integrase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308609|gb|EEY09868.1| integrase [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 332

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 101/318 (31%), Gaps = 21/318 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++G   Y  +       +       T    +  AL       EY  +P         LI 
Sbjct: 6   KNGNK-YRAQVRKKGIYKTATFSTKTEANRWAYALEAQIDAGEYNTTP---NILFAELID 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           +Y K           R              G+     +T +H+R     R  +  P S  
Sbjct: 62  KYLKEVTPTKRGK--REERYRLLRIAGSNLGNIPLPALTKEHLRQWQNQRLQEVKPVSVS 119

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           +   ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++++             
Sbjct: 120 RERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIEKLIFVAGYSPNQAP 179

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +   A  F + + +R  +      +H+     +    +T    +  +P     + 
Sbjct: 180 LLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIA 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
            +  + +      N   ++ +      F+    KA +   +   H  R+ + T  A    
Sbjct: 240 ILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRLAKY-L 298

Query: 303 TAHELMATYGWKTVDQAE 320
           +  EL    G + +   +
Sbjct: 299 SPMELAKVSGHRDLSILQ 316


>gi|167994916|ref|ZP_02576006.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|194444962|ref|YP_002040289.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403625|gb|ACF63847.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|205327312|gb|EDZ14076.1| site-specific recombinase, phage integrase family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 339

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 114/336 (33%), Gaps = 33/336 (9%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++LPP V+K RTR     YY++      + L  P   T        ++    + E     
Sbjct: 11  VKLPPRVSKTRTR-----YYYKPTSRETVTLG-PITLT--------MSALWKRYEEERRN 56

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T + L   + KSA++  LA+ ++  +  +  +++   G      I  + +R  ++
Sbjct: 57  YSDVMTFEKLWKMFLKSAYYTELAIRTQRDYLQHQKKLLAVFGKVKADVIKPEDVRQFMD 116

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            R   + + A Q ++SM  +++W   + YV  NPC       + +   R     D     
Sbjct: 117 RRGLQSKNQANQEMSSMSRVYRWGYERGYVKGNPCAG---VSKFSLKAREQYITDEDYLA 173

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +       R A E       R +D        + +    I+  KTG            +
Sbjct: 174 IYKHADHVVRAAMEISYLCAARQADVLALRWMQISDKGIFIQQGKTGKKQIKVWTPRLQQ 233

Query: 244 LLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRK 291
            L                  NND+ +     F+  +      A       ++ + H ++ 
Sbjct: 234 ALKTAQTECPKLSPDALVLYNNDRGQFIRKTFNNRWLKAVRAAQSELGRQLDYTFHDIKA 293

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            + +       ++ +     G KT  Q   Y +   
Sbjct: 294 KAISDF---EGSSRDKQIFSGHKTESQVLIYDRKVQ 326


>gi|170730246|ref|YP_001775679.1| phage integrase [Xylella fastidiosa M12]
 gi|167965039|gb|ACA12049.1| phage integrase [Xylella fastidiosa M12]
          Length = 276

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 13/256 (5%)

Query: 79  RKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSS 132
              A    L+  SR +           +           I +  I   + +++ + +PS+
Sbjct: 6   WDDAALRWLSEKSRKATAHEDAAKLRWLASYFAGKKLAAIDSDLILRVATLKAAETSPST 65

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A ++L  +R + + A    ++ I+ C  +      T+ +R  T    +   S        
Sbjct: 66  ANRYLALIRSILRRAFD-IWLWIDRCPHISLFPEPTKRVRWLTSVQARSLLS--ELPLHQ 122

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA--MTP 249
           R    F L +GLR ++  +     +      ++                 +  L      
Sbjct: 123 RAMVIFALSTGLRQANVLKLRWDQVDLVRKVLRIPADQAKGRQAIRIPLSLHALQVLQAQ 182

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308
            G+   ++     +      +  +     +AG+ +   H +R   A+  A +G   + L 
Sbjct: 183 RGQHYEWVFTYCGRSIRWVNTRAWHQALQRAGIQDFRWHDLRHTWASWHAQSGTPLYVLQ 242

Query: 309 ATYGWKTVDQAETYTK 324
              GW++      Y  
Sbjct: 243 DLGGWQSESMVRRYAH 258


>gi|156603950|ref|YP_001429896.1| integrase [Staphylococcus phage tp310-2]
 gi|154818036|gb|ABS87463.1| integrase [Staphylococcus phage tp310-2]
          Length = 401

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 117/401 (29%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++   K  YY +         +R+   L    + +   A          K   
Sbjct: 2   WIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNN 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  ++         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHIKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 --------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F       M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G        + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|149927113|ref|ZP_01915371.1| Phage integrase [Limnobacter sp. MED105]
 gi|149824334|gb|EDM83554.1| Phage integrase [Limnobacter sp. MED105]
          Length = 450

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 92/306 (30%), Gaps = 34/306 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           +   + ++   N       T      ++ +         N   +        +I + G  
Sbjct: 51  MANQSVRQAVDNISSSGHPTFTEFAQKFIEENESLWKRSN-IRTKRDILEKWLIPQFGKR 109

Query: 110 DYRKITTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               IT + +          P          S     +TS++ +   A  +      P  
Sbjct: 110 VISSITKQDLLEFRSVLAKAPGKKPGTTMSASRINHVMTSVKQVLDEAADRFN-FTTPYQ 168

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +++R + K   + P+T E+++    +  E  +    F    ++G+R  +      +++  
Sbjct: 169 NIKRMRIKKTDVTPFTIEEVEMIIKYCREDFRDY--FTVKFFTGMRPGEIHGLKWKYIDF 226

Query: 220 ------------NIFSIKTQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQK 263
                       + +    +   +   +++     + L              F N +   
Sbjct: 227 EKRLITIRETIVDDYEETPKTADSNRDIQMAPQVYEALKAQWGVTGTKSPYVFANCNGGP 286

Query: 264 MNATQFSIW-FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
           +     S   +       G+  ++ +  R   AT+   AG +   +    G  + +   +
Sbjct: 287 LTNRNMSNRVWYPMLRSLGLKLRTPYQTRHTFATLMLAAGESPEWIAFQMGHSSTEMLFK 346

Query: 321 TYTKGA 326
            Y++  
Sbjct: 347 VYSRYV 352


>gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 79/303 (26%), Gaps = 42/303 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG--- 122
              +Y        ++V++  S+      +++             D   +   H++     
Sbjct: 16  FFQDYL--PTLRGVSVHTIRSYRDAVVLLLQFTARESRRPIEALDLSDLNADHVKQFLKF 73

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               R ++ ++    L ++    ++ + +    + P   V     K        +     
Sbjct: 74  LESERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPIEYLETA 133

Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231
                          G +    F  +  +G R  +     +  L+ +         K   
Sbjct: 134 EIDTLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPPQVRLHGKGNK 193

Query: 232 IITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKA----- 277
           +    +     +LL      +            F+N    +M+        +        
Sbjct: 194 VRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYLLRKYMLIAST 253

Query: 278 ---TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
              T A      H +R  +A     AG     +    G  +++    Y +   D  R  +
Sbjct: 254 RNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQAL 313

Query: 334 KNS 336
              
Sbjct: 314 AQV 316


>gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2]
 gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1]
 gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W]
 gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase
 gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2]
 gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1]
 gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508]
 gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359]
 gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W]
 gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W]
 gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11]
 gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252]
 gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489]
          Length = 337

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|257066288|ref|YP_003152544.1| integrase family protein [Anaerococcus prevotii DSM 20548]
 gi|256798168|gb|ACV28823.1| integrase family protein [Anaerococcus prevotii DSM 20548]
          Length = 362

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 88/321 (27%), Gaps = 28/321 (8%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+ IR       +   A  + L     + +    P  K  T       + ++       
Sbjct: 26  TGKEIRTNRRGFKSKKEAENAYL---KLRIQTPTKPEAKLKTFNDAYELWLETWQTTVKE 82

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
                +   + +QII   G+   ++ T    +S +        +        + +  +A 
Sbjct: 83  QTVYKTKSLFKNQIIPYIGNIPLKEFTQLQAQSFIIDASKRYKNISNIKIYAKAVLNYAK 142

Query: 149 RQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
               +  NP   ++ PK          +      +       +   E  Q    F  L +
Sbjct: 143 DLHVIEKNPFDKIKIPKEKVNMQAINKKNYYTPEELKTFLEITKEKEPLQTYAFFRLLSH 202

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLL 245
           +G+R  ++       L     ++   K+ +                   + L       L
Sbjct: 203 TGIRSGEALALEWSDLNTKTNTLTISKSISRDKNGKQIISTTKTGNTRKITLDTETTDTL 262

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304
                  + +      + +  +           K  ++K + HG R   ATI    G + 
Sbjct: 263 IKLKETNKKYIFERSGKVVTRSYPLKVLNRIIEKNNLHKITVHGFRHTHATILLRMGKSI 322

Query: 305 HELMATYGWKTVD-QAETYTK 324
             +    G        E Y+ 
Sbjct: 323 KYIQERLGHTDPTITLEIYSH 343


>gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
 gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548]
          Length = 457

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 102/383 (26%), Gaps = 65/383 (16%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHE-------STFIPAYMSALTGSTPKREYINSP---- 64
            R+GK ++ +    G+   +    E            A ++ LT    K E+I +     
Sbjct: 15  KRNGKFVHQYSDIDGKVKTITLKDECGKPVTLRAKADAIVAELTRERQKIEFIENRLEYM 74

Query: 65  ----------RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
                     ++    L  L   Y ++ +       +    E Y  + +    +     I
Sbjct: 75  AQVAGSRKIIQRSRIKLSELWETYLRNPNRPDSGRLTLKRNELYCRKFLSFLEEKKIDSI 134

Query: 115 ------TTKHIRSGVESRKHTPSSAIQFLTSMRVLFK--------WAVRQEYVAINPCLS 160
                 T     + + S   +P +   +L +++++FK        +   +   A      
Sbjct: 135 DDITFDTAATFMTNLWSTGISPKTYNYYLQTLKLVFKTLLQDDSPFRNIKAKTATTESRK 194

Query: 161 VERPKRKTEGIRPW---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              P++ +   +         + + +                  +  R       G    
Sbjct: 195 PFTPEQVSAIFKTLDDENYHILHKPQMRILFLLGLCFGLRMHDAACFRWDYIQGDGTVKF 254

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           +        ++   +    + +   K+       +       ++   N++  S       
Sbjct: 255 KARKTIKTMKQYIVLPIPSILEEQFKIAETWKRNEYILPDVAERYGYNSSGISTDVDKLL 314

Query: 278 TKAGV---------------------------NKSAHGVRKFSATISADAGATAHELMAT 310
             AG+                             S H  R    TI+A +G     + + 
Sbjct: 315 RSAGIQTKEQPVETRRMFYINSQGETKQRRIGRYSFHSFRHTFCTIAASSGKDLSLIRSI 374

Query: 311 YGWKTVDQAETYTKGADRIRLGI 333
            G   V   E YT      +  +
Sbjct: 375 VGHSNVAMTEHYTHYTLEAKKSV 397


>gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
 gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266]
          Length = 338

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 77/303 (25%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+  +R++      +  +  ++ S+  + +        +++    I + +       K +
Sbjct: 24  LLELFREAMRVRHYSRRTEETYCSWVKRYVHFHNMRHPKEMREPEINAFLTHLAVEEKVS 83

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------------------------- 164
            S+  Q L+++  L++  + +E   +   +   +P                         
Sbjct: 84  ASTQNQALSALLFLYRHVIGKEIGDLGHLIRARKPSHLPVVLTRDEVKALLVQLAGVKWL 143

Query: 165 ------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-----LLYSGLRCS 207
                                       +      +G++ R+          L   L+  
Sbjct: 144 MASLMYGAGLRLMECLRLRVQDIDFSSNEILVRDGKGAKDRITMLPESLKKPLADHLKQI 203

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
            S              +                +  +       K        +  M+ +
Sbjct: 204 KSLHDKDLAEGWGRVLLPGALDRKYPNAPAEWRWQWVFPQEHRWKNAKTGEEGRHHMDES 263

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 KA    A + K A  H  R   AT   + G     +    G   V     YT  
Sbjct: 264 LIQKAVKAAVFHAQLTKRATCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHV 323

Query: 326 ADR 328
            +R
Sbjct: 324 LNR 326


>gi|78777157|ref|YP_393472.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497697|gb|ABB44237.1| Phage integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 392

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 124/369 (33%), Gaps = 48/369 (13%)

Query: 1   MTPSLRLPPFVTKERT-----RHGKIIYYFRKGHGRRIRLPYPHE---------STFIPA 46
           M    +   ++ ++       R G     F   + R+ R                  IP 
Sbjct: 1   MMKKQKSVKYIYQDVRFRIIERSGHWNLDFFIDNKRQRRSTSLKANSDNLLIIKKEIIPE 60

Query: 47  YMSALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104
            M  LTG+     E  + P+    T++    +   S    ++  +      + F   ++ 
Sbjct: 61  LMLGLTGANIALEEEFDDPKD--MTVEEFGIKSINSNKP-NIKPHVYERKMAAFKNYVVP 117

Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
             G      I    I+          TPSSA ++ +    + + A   E +  NP   V+
Sbjct: 118 YFGKTKISAIKPMDIQDWQNRLLTTLTPSSAQKYRSIFYNILQDAFINEIIVKNPMQLVK 177

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAG 213
            PK+K++    + +E+     +                 +  ++ +L++G+R  ++    
Sbjct: 178 APKQKSKQKTLFDEEEDVMPFNNAEIKLILEDTQLFEHNKNFYKLMLFTGMRPGEAVALR 237

Query: 214 VQHLQNNIFSIKTQK------------TGTIITVELPDGFMKLLAMTP----IGKETFFI 257
            Q +  +   IK  +              ++  V++    +++L          +  F+ 
Sbjct: 238 WQDILFDKKQIKIMQTRVAGKDGTPKTMSSMRYVDILPQTLEVLLSQQKLTGDKEYLFYT 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTV 316
            + K+  +    +  FK   T+  + +   + +R   A+     G     +  T G K V
Sbjct: 298 RSGKRYFSHDTLAASFKRLLTRNKIKERVLYNLRHTFASQMISQGVDIVWVSKTLGHKDV 357

Query: 317 D-QAETYTK 324
                TYTK
Sbjct: 358 SITLSTYTK 366


>gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 386

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 93/301 (30%), Gaps = 36/301 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKHT 129
            + +      G +  ++  S+       +I    +    +I    T+            +
Sbjct: 67  FTAWLHGDLTGRVKPSTYESYYRCIVGYVIPFYQEKGNEQISLQTTSDFSCRINNHEGVS 126

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S   + LT  +   +  +++     +   +++ P++ +  ++ ++ ++ +  +    + 
Sbjct: 127 VSYRRKILTIYKTALREIMKRNKECDSILNAIQMPRKISAEVQAFSVKEQRMLERTIIQS 186

Query: 190 SQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246
              R L      Y+G+R  + C    + +     ++   +T + I          +L   
Sbjct: 187 PDKRCLGILLCFYTGIRLGEVCGLKWEDIDFEAGTMVVTRTVSRIKNFDETKKKTVLYIG 246

Query: 247 -------------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                                    M       F + N +  M+  ++   F+   T A 
Sbjct: 247 KPKSIHSVRKIPLPDFLLELARELKMERSDNNHFILTNSEYPMDPRKYQKLFQKLLTHAS 306

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRR 338
           V K   H +R   AT + + G     L    G   V      Y     ++ +  I     
Sbjct: 307 VKKRKFHAIRHTFATRALELGIDIKTLSEILGHSNVSITLNIYAHSMYEQKKKAIGKLNA 366

Query: 339 I 339
           +
Sbjct: 367 M 367


>gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088]
 gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088]
          Length = 346

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 90/318 (28%), Gaps = 36/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR           A+ +          ++   +    TL  LI+ +        +
Sbjct: 24  KNGKRIR-KKFATKGEALAFENHTLQKVDAAPWLGEGKD-KRTLIDLITMWY---ERHGV 78

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
           A+++    ++         G     +   +   +    R            K +P +   
Sbjct: 79  ALSNGEKRKNAMTWAAECMGFPLATEFNAQLFTAYRAKRLDGHYARTNRVSKVSPKTMNL 138

Query: 136 FLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                  +F    R  E+ A NP  +V + +     +   T E++ +            L
Sbjct: 139 EHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTTEEIDRLLLECKRSKVKYL 198

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R +++       +     +    K     T+ L D  +  L  T    
Sbjct: 199 ELVVKICLATGARWNEAATLKSSQITGGKVTFVKTKGKRNRTIPLDDELLSELPETKGAL 258

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
                               F++   +AG+   +    H +R   A+     G     L 
Sbjct: 259 F------------PKPCYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMNGGNILVLQ 306

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 307 KILGHADITMTMRYAHFA 324


>gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
 gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 78/304 (25%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
           ++       A  +  S+  +  + I          +    +   +       K    +  
Sbjct: 10  KEHMLTRHYANKTIESYLFWIKRFITFHQLAHPSTLAEDDVIQFLSYLTVEEKVAVKTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L S+  L++   +                 + +     T+E+++  +       + RL
Sbjct: 70  LALNSISFLYRDYFKTPLSLDMRFQKS---LTEKKLPVVLTREEIR--RFVQHIDPRYRL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------------- 227
             + L  SGLR  +  R  VQ +  +  +++                             
Sbjct: 125 HIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKAQVNLA 184

Query: 228 --KTGTIITVELP-----------DGFMKLLAMTPIGKETFFI--------NNDKQKMNA 266
                    +                    L                       +  +N 
Sbjct: 185 RNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGELRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      K  A+ A + K+   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 SAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTH 304

Query: 325 GADR 328
             +R
Sbjct: 305 VIER 308


>gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 344

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 42/298 (14%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRS 121
               L   I     +     L   + + +  ++   +    +         ++TT+ +R 
Sbjct: 21  PRIKLDQAIDFVISAKKAEGLRERTLVDYAKHYGYFVDWLREAHADVEYVDEVTTQMVRD 80

Query: 122 GVESRKH--------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            +   K+                    + ++    L +++ +F    R + + +NP   V
Sbjct: 81  HISYLKYDRTRYEGHKYIPTKDQRVGLSDTTINIRLRTLKAIFNQLERDDLIEVNPLAKV 140

Query: 162 ERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           +  ++  +     T ++++            G +  +    LL SGLR S+  +     +
Sbjct: 141 KLLRQDVDLTNCLTDDEVKAILAQPNRRDFVGFRDYVGIVTLLDSGLRISELLKLRAGDI 200

Query: 218 QNNIFSIK----TQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNAT 267
                 I       K      V +     KLL             +  F+++  + ++  
Sbjct: 201 DFQTRFIVLPGEMNKNRKPRMVPISAHTAKLLLQLIEENRQFFSTDRLFMSSFGEPISPN 260

Query: 268 QFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            F+   K    KAGV     +AH  R   A      GA    +    GW  +     Y
Sbjct: 261 HFNKRLKYYGEKAGVAGKKMTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRY 318


>gi|146312270|ref|YP_001177344.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145319146|gb|ABP61293.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 393

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 106/348 (30%), Gaps = 28/348 (8%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSAL---------TGSTPKRE 59
            +    T  G I + FR    G++ RL      +        +          G  P+  
Sbjct: 27  GLGIRITPKGVISFQFRFRWEGKQHRLGLGRYPSLTIREARNMVADLRESVDRGIDPRLM 86

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TK 117
             +   KK  T+K  +  ++++    SL   ++  ++S     +          +I    
Sbjct: 87  AGSGRAKKKPTVKECLDYWQENYVETSLREKTKALYKSTVIKHMSDAFAGMPIEEIPVRL 146

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW 174
            +    E  K  P  A Q L  +R    W  R++++     + ++      + + G    
Sbjct: 147 WVERFTEEEKINPRRARQLLVQLRSAIGWCSRRQFIGTTELMLIQPKDVGVKSSVGEVTL 206

Query: 175 TKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSC------RAGVQHLQNNIFSIK 225
           +   + +           +  +L  + L+  G R S+            + +        
Sbjct: 207 SYNQLAKIWLAIERSRGSTSNKLLHQLLMLYGARNSELRLSVKDEFDREEGVWVVPADKS 266

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
             K      +      +   A    G   F   + K+ M     + +        G    
Sbjct: 267 KTKKMIRRPLFDAADDLLKKAEMTYGNVLFPGPDLKKSMTIAGANRYLGRIQASLGFGEF 326

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRI 329
           SAH  R+  AT  ++ G   H +    G +       Y K    A++ 
Sbjct: 327 SAHDFRRTLATRLSEEGVAPHVIEKMLGHELGGVLSVYNKHDWIAEQK 374


>gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 397

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKKPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N+  +   A  ++
Sbjct: 260 IETPKTKSGTRQVPLSKETIRAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYN 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 320 MLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 405

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 98/305 (32%), Gaps = 25/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRK 105
             +  +   +       +K  TL  +  ++    KS        ++   +E+        
Sbjct: 87  EEIVTAETIKNRFIGKAEKARTLVAIFEDHNARMKSLVGQEFEKSTLQRYETCLMHTKDF 146

Query: 106 ------SGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                   D    KI    +          RK   +SAI+++ ++  + +  +   ++ +
Sbjct: 147 MEWQYNLSDIPVNKINFAFLNDFEYYLRSVRKCGNNSAIKYIKNLGKIVRICLGNGWLTV 206

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRA 212
           +P L+ + PK+K       TKE++++         +    R  F F  Y+GL   D  + 
Sbjct: 207 DPYLNYK-PKQKAVHREVLTKEELERMSKKKFGVQRLDQVRDVFLFSCYTGLAYVDVHKL 265

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINNDKQKMNAT 267
               L   I       T    T  L         + ++       E    +     M   
Sbjct: 266 KRSELVTGIDGGLWIHTHRQKTDTLSRIPVLSRALSIIKSYENHPECIVKDTLLPVMTNQ 325

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324
           + + + K  A    +NK  + H  R   AT    + G     +    G  ++   + Y K
Sbjct: 326 KMNAYLKEIADLCRINKVLTFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAK 385

Query: 325 GADRI 329
             D  
Sbjct: 386 VMDHK 390


>gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
 gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39]
 gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426]
          Length = 320

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 411

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 93/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +   +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLEKYRIVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 297 LDIANRIIGKYRGLCEDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKVK 388


>gi|253699447|ref|YP_003020636.1| integrase family protein [Geobacter sp. M21]
 gi|251774297|gb|ACT16878.1| integrase family protein [Geobacter sp. M21]
          Length = 433

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 111/399 (27%), Gaps = 61/399 (15%)

Query: 1   MTPSLRLPPFVTKERTRHG-----------KIIYYFRKGHGRR-IRLPYPHESTFIPAYM 48
           M   L+      ++   +G             +Y +     RR + L +  + T   A  
Sbjct: 12  MIRKLKPDTNEYRKSEGNGFTIRVMPSGFKSWLYLYAINGKRRCMGLGHYPDVTLETARD 71

Query: 49  SALTGST---------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
                             +E      +K  T+K L  +Y       +   +S    E  F
Sbjct: 72  RFEAAKKMVKNGMDPLDAKEEEQEQHRKALTVKQLFDDYLVRHAKLNKRESSWREDERLF 131

Query: 100 D-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              +  + G      I  +     ++     P+     +   R LF +AV ++ +   P 
Sbjct: 132 KVNVEPEWGKRKAEHIKKRDCIELLDKYADRPALCHNVMKLTRKLFNFAVEKDILEHTPF 191

Query: 159 LSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
             V+ P       R  T  +     +      +   + +   + LL +G R  + C   V
Sbjct: 192 TGVKVPVELESRERILTDTEIKKLWRTELPKAAISDEVKQIIKLLLLTGQRVGEVCGITV 251

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----------NNDKQKM 264
             +  N ++I  +++    T  +      +  +       +F               + +
Sbjct: 252 NEVDGNWWTIPQERSKNGQTHRVYLTDTAIKLLGKSINGYYFPSPVVKNDSDGKPVFKHI 311

Query: 265 NATQFSIWFKAKATKAGV-----------------------NKSAHGVRKFSATISADAG 301
           +    +   +                               + + H +R+  +T  A  G
Sbjct: 312 DENAVAYAIRKNLKDYQPRRPIKGDRISMVQVPEEKKMSIAHFTPHDLRRTFSTSLAKLG 371

Query: 302 ATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
                + A  G K     + Y +       R  +    +
Sbjct: 372 FNDEIIDAVMGHKKQGVIKIYNRHKYDTEKRQALVAWEK 410


>gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 295

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 85/280 (30%), Gaps = 23/280 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP 130
           + L+ ++ K       + N+   ++S     +R    +  +  IT +   +       T 
Sbjct: 6   EKLVEKFLKFH--SGHSQNTVKYYKSGLKAFMRYFDENKTWENITIEDAINFYNGYNKTG 63

Query: 131 --SSAIQ-----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +  +      L  +   ++WAV  +++  NP  +  +  +  +  R    E      
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPVKTFVKTLKFEKKERINLSEKQVATV 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
                     +   FLL +G+R S+        +   +    I+  K G    V + +  
Sbjct: 124 LAKVMNYDYYVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGKDRYVFIDNEL 183

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKAT-KAGVNKSAHGVR 290
           +  L      +E   +  +   +              F  + K     K   + + H  R
Sbjct: 184 LNHLKKYIAYRENLNLKTNCFFVTEQGKKVTNYAIDKFREYLKEVTKDKIPFDVTPHVFR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               T++ +       L    G   ++    Y       R
Sbjct: 244 HTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESR 283


>gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 378

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 116/360 (32%), Gaps = 45/360 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +  +G+    +R   GR     +        A++   T    + E+   PR     L   
Sbjct: 7   KRPNGRWRARYRDDTGREH-ARHFVRKVDAQAWLDEQTARMVRGEW-ADPRAGRELLSAY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH----- 128
            + + +S      +  +    ++     I+ + G      I    +++ V+  +      
Sbjct: 65  ATRW-QSVQVS--SPGTARIVDNALRLHILPRLGSERVANIRRSDVQAFVKWLESRELRP 121

Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     +  S       +  +   AV    +A++PC  +  PK   + +   T ++
Sbjct: 122 ATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDEVEVPTLDE 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
           + + +       + ++    L  SGLR  +     +  +     SI+ ++          
Sbjct: 182 IDRVRDA--LAERWQVLPVVLAGSGLRVGELLGLRLSDVDFLRRSIRVERQRLQTNQIAP 239

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      +   + D     LA  P  +E  F +   + +   ++       A  AG
Sbjct: 240 LKSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKRLVSDAAKVAG 299

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK----GADRIRLGIKNS 336
              ++H  R F+A+     GA+  ++ A  G  +       Y        DR R  +  +
Sbjct: 300 AEITSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHLWPGDEDRTRKVLDAA 359


>gi|325526292|gb|EGD03903.1| phage integrase family protein [Burkholderia sp. TJI49]
          Length = 381

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 88/375 (23%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R       Y F+    +              A                     P TLK 
Sbjct: 5   RRNNSKNWYYQFQIQGKK--FFGSTGTPNKTKAAQVEREMRNRAHAEQYLGDTPPITLKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSG---DFDYRKITTKH---I 119
            + EY ++    S   N                    +   G   D    ++TT+    +
Sbjct: 63  ALEEYVEARSDTSYHRNMCSIVRKTLGYKLHPRTKAKLPCYGMSPDTLLHELTTRGFDLL 122

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------- 171
            +  ++     ++    +  +R       +  +      +  E                 
Sbjct: 123 VAKRKAEGDKAATIKHEIGLLRATINEMAKLGFKVSRDIVFPELRTSYRLRYLDSNDESA 182

Query: 172 ----------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                     R                         FLL +G R S+        +  + 
Sbjct: 183 LLRELDPERLRTRINPSKPLTPEMTRNMQDNYDITVFLLDTGCRYSEVANIPWSAINIDA 242

Query: 222 FS---IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKA 277
            +    +++     +          L       +       + +  N   +S    K   
Sbjct: 243 STISLYRSKVRNEDVLHMTSRLETILRRRWEERRTGQRYVFEDRTGNERGYSTKSIKKAI 302

Query: 278 TKAGVN-----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +AG+N            + H +R   A+    AG + +E+    G       + Y   +
Sbjct: 303 ERAGLNDPALVKERGGRVTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLS 362

Query: 327 --DRIRLGIKNSRRI 339
             D  R  +K    +
Sbjct: 363 PNDASRKAVKVIDSL 377


>gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319]
 gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319]
          Length = 431

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 82/272 (30%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 RSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTVNSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   K    E    RL
Sbjct: 181 LCWLSRLMFRAVSKRIIRCNPFENAKYDKEEKKIRFLQKSDVMKLMAMKMNEREAELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  SD      +H+Q      ++  K ++   +  +       + +     
Sbjct: 241 MFVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAEAIINHCR 300

Query: 251 GKETFFINN-----------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            ++                   +  + +             G+    S H  R    T+S
Sbjct: 301 SEKRRSEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AG     +    G  ++   + Y +  D+ 
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDKK 392


>gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum]
 gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum]
          Length = 387

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 82/297 (27%), Gaps = 52/297 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V    
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTA 310


>gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601]
 gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601]
          Length = 331

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 36/314 (11%)

Query: 71  LKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIR 120
            + L+  +   +       + ++  S+   F  ++R      G       + +I    + 
Sbjct: 7   FQALLQGFFTDRMMRQRQASPHTISSYRDSFRLLLRFAQRRIGVQPQRLTFEQIDASLVA 66

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
           + +E     R  + +S    LT++R  F++A  +          V     K         
Sbjct: 67  AFLEDLQSARGISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIPSKRCTRAQIGF 126

Query: 172 --RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQ 227
             R      +         G +        + +GLR S+  + R     L          
Sbjct: 127 LAREEIDALLHAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTELGVGAHVRVIG 186

Query: 228 KTGTIITVE----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281
           K                   LL      ++  F +    +++A            +A   
Sbjct: 187 KGRKERVTPLTKATAQALRALLREIDAEQDLVFCSARGTRLSADAVQHLVSKHVARAAQS 246

Query: 282 ------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
                  + + H +R  +A     AG     +    G ++++  + Y        +  + 
Sbjct: 247 CPSLACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAALD 306

Query: 335 NSRRISSVVDSDDP 348
             + + +      P
Sbjct: 307 KVQPLGTRTGRFRP 320


>gi|312621007|ref|YP_003993735.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
 gi|311872728|emb|CBX86822.1| site-specific recombinase, phage integrase family protein
           [Photobacterium damselae subsp. damselae]
          Length = 373

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 103/348 (29%), Gaps = 31/348 (8%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHG--------------RRIRLPYPHESTFIPAYMS 49
            L+ P  + K R      +Y F +  G               +I L      +   A   
Sbjct: 13  KLKTPSKLIKYRDLKCDGLYLFARPTGNHSFVLVFQNQNKHYQISLGNIQTLSLAKAREL 72

Query: 50  ALTGSTPKREYIN--SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
           A      +   +N  +  +KP         +            +   ++S F + ++   
Sbjct: 73  AYQERAKRDPKLNLHAQPQKPILFDEFGQSFLTH-QARLWKPRTITWYDSLFQRNLLPAF 131

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164
                 KIT   ++    ++ H  +     L  +  + K A    Y+    NPC  + +P
Sbjct: 132 QGLTLDKITADKVKVWYGTQSHHGA-----LALLSNIMKKAEALGYIPAGSNPCKGLRQP 186

Query: 165 KRKTEGI----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +++  G     +   +             +  RL    +L +G RC + C       +  
Sbjct: 187 RQRLTGYALTSQELVQLWRALDNGTIHNPTLTRLIRLLVL-TGCRCGELCNLKQCDYRMG 245

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
              +   KTGT            L          +  +++   +   + +  +K      
Sbjct: 246 KLYLPDSKTGTKTIYLSSFARYWLQEQQQESTNEYIFSDELGSIKRGRLTQAWKTLRQSI 305

Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +     H +R   AT + + G     +    G +  +    Y   A 
Sbjct: 306 RLPHIRMHDLRHTYATRALENGEHLLNVGKLLGHELPETTLRYAHLAS 353


>gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 369

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/336 (7%), Positives = 70/336 (20%), Gaps = 69/336 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQI---------------IRKSGD------FDYRK 113
           I  Y         + N+  ++                      +   G+           
Sbjct: 29  IERYLAYLTDIERSPNTVKAYAHDLKDWFVFLDARSLNWREVRLEDLGEFVSWLRLPPAG 88

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE----YVAINPCLSVERPKRKTE 169
                +         +  +  + L ++  L+ +  R       +         R      
Sbjct: 89  RAGAVVLLPSAEHHCSAGTVNRKLAAISGLYTFHARHGVDLGDLVTELHPGRRRRSGWKP 148

Query: 170 GIRPWTKEDMQQFKSFW----------------------SEGSQPRLAFEFLLYSGLRCS 207
            +   +    ++ ++                            + RL +  L  +G+R  
Sbjct: 149 FLYHLSSGQPERRRTIKLRTPRQHPTILTAGQVQAILDACIHLRDRLLWALLWDTGIRIG 208

Query: 208 DSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP---- 249
           ++     + +               N   +         I+ +L   +   L        
Sbjct: 209 EALGLRHEDVAAAEGELTVAPRSNDNRARAKSATPRTIPISPQLIRLYADYLHDEYGDLD 268

Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                   +                        G++   H  R   AT           +
Sbjct: 269 SDYVFVNLWGEPFGHPWGYPAVYDLVLRLRRSTGIDFDPHWYRHTYATRLLRQNTPIEVV 328

Query: 308 MATYGWKTVDQAE-TYTK-GADRIRLGIKNSRRISS 341
               G  ++      Y     +  R  ++ +  ++ 
Sbjct: 329 STLLGHSSIATTMDIYGHLSVEDARRALEAAGFLTG 364


>gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
 gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM
           13479]
          Length = 296

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 85/274 (31%), Gaps = 8/274 (2%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  I  Y +       +  +   +  Y  + +         K  +  I          P 
Sbjct: 14  EETIDNYCEWLAGREKSEGTIRKYRYYLQKFMEHMNGRSVDK-GSLLIWKQYLRNHLAPI 72

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    LT++   F++  R E   +        P  +        +       +F     +
Sbjct: 73  TVNGALTALNGFFRFY-RWEDCEVRFLKITTSPFSQESRELSKEEYLRLVDAAFRKGNER 131

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTP 249
             L  + +  SG+R S+     V+ +Q     I+ +     +  T +L +   +      
Sbjct: 132 LSLLLQTVCSSGIRISELKYVTVEAVQKGKAEIECKGRIRTVLLTRQLCNMLAEYAKRKG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
           I +   FI      ++ +      KA +  AGV       H +R   A    +      +
Sbjct: 192 IMQGMIFITRRGNALDRSNIWREMKALSMAAGVESDKIFPHNLRHLFARTYYEIEKDLSK 251

Query: 307 LMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
           L    G   V+    YTK +  R R  ++    +
Sbjct: 252 LADILGHSDVNTTRIYTKESGTRHRQQLEKLGLL 285


>gi|226355503|ref|YP_002785243.1| phage integrase [Deinococcus deserti VCD115]
 gi|226317493|gb|ACO45489.1| putative phage integrase [Deinococcus deserti VCD115]
          Length = 395

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 104/375 (27%), Gaps = 44/375 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + R+G   +  R+    ++ +              AL  +   RE       +  T+  
Sbjct: 24  YKYRNG-YRWQLREKFQGKMVVVTSGSEATKLDAKRALARAITDRERGLLVASEKVTVGE 82

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR--KHTP 130
            +  +        +   +   +E      +  +       K+   HI             
Sbjct: 83  WLDRWL-HLRKPHVRETTFEQYELRLRLYVPEELKRLTLNKVKRAHILELEAQLSEHLRA 141

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-----PKRKTEGIRPWTKEDMQQFKSF 185
           S+  + +  +   FK A+ Q+ +  NP  S++       KR+ +  +  T  ++  F   
Sbjct: 142 STRKKVMEHLSAAFKEAMHQDLLVKNPADSIKVSASLAEKRQPKRRKALTDAELVTFLQE 201

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231
                   L +  L   GLRCS++       +      I   +                 
Sbjct: 202 AQSDPLFPLFYL-LFSLGLRCSEALGLRWGDVDFEYREIHIVQANKLVKNKPRLGELKTE 260

Query: 232 ----------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                               +  +     L  T    +  F       ++          
Sbjct: 261 NSRRTLPASPDLLAVLRAHQQNQNVLKAQLGGTWPPHDLIFTTGLGTLLDRHNVQRNIHR 320

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY-TKGADRIRLG 332
              +AG+ K   H  R  + T    AG     +    G      A   Y T   D IR  
Sbjct: 321 ICERAGIEKFGTHSGRHTNITNLLRAGHLPEVVAKIAGHSRPSTAMLHYRTVMRDEIRNA 380

Query: 333 IKNSRRISSVVDSDD 347
             + +R  ++ ++ D
Sbjct: 381 EFSLQRHLTLREAAD 395


>gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 345

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 95/341 (27%), Gaps = 49/341 (14%)

Query: 14  ERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +  +G+ +  F          G+R+R           A+ +          ++   + K
Sbjct: 4   RKLANGQWVADFYTVTRSNGKDGKRVR-KKFATKGEALAFENYTLQKIEDTPWLGQGKDK 62

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              L  LI+ + +          +       +S      +  G     + T +   +   
Sbjct: 63  RR-LSDLINLWFERHGI------TLRDGEKRKSSMLWADQCMGSPLATEFTAQLFTTYRA 115

Query: 125 SR------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI 171
            R            + +P +          +F    R  E+ A NP  +V + + +   +
Sbjct: 116 KRLDGHFARTKRVAQVSPRTMNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEM 175

Query: 172 RPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
              T E + +        S     +  +  L +G R  ++ +     +     +    K 
Sbjct: 176 AYLTGEQIDRLLEECRVSSAKDLEMIVKICLSTGARWGEAEKLKRSQITAGKITFIKTKG 235

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
               T+ L    +  L        +                  F++   +AG++  A   
Sbjct: 236 KRNRTIPLDTEIIAELPKKNGALFSPCYY-------------AFRSALARAGIDLPAGQL 282

Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   A+     G     L    G   +     Y   A
Sbjct: 283 THVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFA 323


>gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
 gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 101/300 (33%), Gaps = 24/300 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRK------SGDFDYRKIT 115
             K  TL  L  ++ + A      S A  + + ++  + ++           D   R+I 
Sbjct: 104 EVKQQTLLELFKQHNEDAEKLCGISKAPATLVKYDRTYRRLEEFMKVKYRISDIALREID 163

Query: 116 TKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            K +       +       ++  +F+   R +   A    ++ ++P  +      K    
Sbjct: 164 HKFVTDFEFYLRTVSRCNENTTGKFMQIFRKIVLIAKNNGWITVDPFANY-HIHMKAVDR 222

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              T+E++++      +  +    R  F F  ++GL   D      +++  +    K  K
Sbjct: 223 GYLTEEELERILKKDFQSQRLEQVRDIFIFSCFTGLAYIDVYNLKKENICTSFDGSKWLK 282

Query: 229 TGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
                T    +  +    LA+    +     N     ++  + + + K  A   G+ K  
Sbjct: 283 LHRQKTATPVNLPLLKIPLAILEKYEGKLKNNRVLPVLSNQKANSYLKEIADLCGIKKNI 342

Query: 285 SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           + H  R   AT +    G     +    G   +   + Y +  +      ++ + ++S +
Sbjct: 343 TFHLARHTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIR--EDMKVLASKL 400


>gi|149191711|ref|ZP_01869952.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
 gi|148834451|gb|EDL51447.1| hypothetical protein VSAK1_09143 [Vibrio shilonii AK1]
          Length = 378

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 93/335 (27%), Gaps = 20/335 (5%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + I        R       +       +           +     +    T++    E  
Sbjct: 39  RWIVRLGWKGQRYYESFGTYPEMKFADFERLACQFIADVQSGAYRKGSRLTVQQFFDEVL 98

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLT 138
               +         +F S   +++   G      +T + +   + S    + S+  ++  
Sbjct: 99  --VPFSQRHHRDHKTFVSRSKRVMTAMGRKRITDVTRRDVEKFLNSLTGLSNSTLNRYHA 156

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-- 196
            +  LF  AV  + +  +P   +++     +  R  + ++M+ F            A+  
Sbjct: 157 FVSKLFSMAVEHDIIDKSPVKGIKKLVENNQKDRVLSSQEMESFCRHACAEPNFIHAYAL 216

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMT-----P 249
              L +G+R  +        L +++ S      K+G    +   +   +L+         
Sbjct: 217 MLSLLTGMRVGNVMSLTRSMLADDLSSALLPMTKSGKSQRIYFSEPAQRLIRKCLKVSFN 276

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHE 306
                   N  +            +      G      + H +R+  AT           
Sbjct: 277 DWVFPSLKNQGEHIAYPRACMDRIQQAMKAEGSLEAPFTIHDLRRTQATQMLHVTNDIRL 336

Query: 307 LMATYGWKTVDQAETYT-----KGADRIRLGIKNS 336
           +  + G   V+  E Y        A   +  ++  
Sbjct: 337 VQQSLGHSNVNVTERYAYYQNNHLAQASQQTVEAM 371


>gi|148258966|ref|YP_001243551.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
 gi|146411139|gb|ABQ39645.1| putative phage integrase [Bradyrhizobium sp. BTAi1]
          Length = 451

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 102/371 (27%), Gaps = 44/371 (11%)

Query: 7   LPP-FVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP   +    T     +  +R     R   I L                 G   K +   
Sbjct: 26  LPGFGLRLFTTGKRSYVIQYRAAGRSRRYTIGLHGVWTPETARQEAKVQLGRVAKGDNPA 85

Query: 63  SPR---KKPTTLKWLISEYRKS--------AHWGSLAVNSR-ISFESYFDQIIRKSGDFD 110
             R    +  T+K L + Y                    +           I+   G   
Sbjct: 86  EERELDHRAITVKELCNLYLNDLSAGLILGKRGRPKKPTTIVTDTGRIHRHIVPIIGTRR 145

Query: 111 YRKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
            + +T   +   ++                      +    +A + +  +  +  +AV  
Sbjct: 146 VKDLTKADVGKVLKDIMAGKTRTTVKTKKLRGKSIVRGGVGTATRTVGLLGGILTYAVEA 205

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLR 205
             +  NP   + +PK +    R    E     +    +G Q +          +  +G R
Sbjct: 206 GIIETNPAHGIRKPKDRVRTRRLSEAEYRTLGQLLREKGEQEKYTTTVDIVRQIALTGCR 265

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
            S+  +     +      ++ + +        +    ++ L          ++   + + 
Sbjct: 266 RSEIIQLRWSEVDTEASCLRLEDSKEGESIRAIGLPVVEYLERRRACAVGTYVFPGQGED 325

Query: 265 NA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           NA   F   +K    K+ + + + H +R   A+I+ D G T   + A  G         Y
Sbjct: 326 NAFGSFPNHWKQIFKKSPLADITPHVLRHSFASIANDLGFTEVTIAALVGHAKGSVTSKY 385

Query: 323 TKGADRIRLGI 333
               D   +  
Sbjct: 386 IHTLDTALIMA 396


>gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 335

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 91/281 (32%), Gaps = 31/281 (11%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------- 128
            +     +LA NSR  +E    + +    +  Y ++  +H+    E  +           
Sbjct: 42  LEFLRSNNLAPNSRKLYERELKRFLA-WSELHYHELRPRHLALYKEYLRDEIRTDAGKPL 100

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + SS    + +++  FKW        ++ NP L ++  K      +  T E+M+Q  S  
Sbjct: 101 SKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKVPLPPAQSLTPEEMEQVWSAL 160

Query: 187 SE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                ++ R  A   +L  GLR  +  +  V      +  +   KT     V L     +
Sbjct: 161 ELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLFLPDTKTNEPRLVPLKKESRE 220

Query: 244 LLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +LA                     +   +   ++++        +     A + +   H 
Sbjct: 221 VLAQYLLTRQQSGEVLTSLSPLMISHHASYKGERLSYHGIYFAVEKIGEIALIEDLHPHS 280

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT     G          G ++      YT  +++ 
Sbjct: 281 FRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQE 321


>gi|70726004|ref|YP_252918.1| hypothetical protein SH1003 [Staphylococcus haemolyticus JCSC1435]
 gi|68446728|dbj|BAE04312.1| int [Staphylococcus haemolyticus JCSC1435]
          Length = 391

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 107/382 (28%), Gaps = 59/382 (15%)

Query: 18  HGKIIYYFRKGH----GRRIRLPYPHESTFIPAY-MSALTGSTPKREYINSPRKKPTTLK 72
                Y    G     G+   +          A   + + G   +     +P     T K
Sbjct: 9   KNNWRYRISLGKNAETGKYEYISKTGFKRKSDAKHQAEMIGRQLRNGDYIAPSSS--TFK 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
            +  ++ K      + V+S  + E      I +      + I     +  V+    +++ 
Sbjct: 67  QVADDWLKQY-ANDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQYSK 125

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +     + S  ++FK+A     +   P   ++RPK+K         E  ++F        
Sbjct: 126 NYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVEELEDIEIHKKFLEKDELFQ 185

Query: 191 QPRLAFEFL------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             ++A                 Y+G+R  +        +     +I   KT         
Sbjct: 186 FLKVAKYHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKK 245

Query: 239 DGFM-------------------------------KLLAMTPIGKETFFINNDKQKMNAT 267
              +                                      +     F + +   +   
Sbjct: 246 HYQILTRKTESSIGKITVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIK 305

Query: 268 QFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
           +  +W KA   K  +     S H  R     +  +AG    E+      K ++     Y 
Sbjct: 306 KLQLWIKAILKKTDITNKQISTHSFRYTHYALLIEAGVHIKEIQERLRHKDINTTMNIYA 365

Query: 324 KGADRIRLGIKNSRRISSVVDS 345
           K  +  +     S++ S ++++
Sbjct: 366 KITNSYK--KDASQKFSKLMEN 385


>gi|77408589|ref|ZP_00785324.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|314937584|ref|ZP_07844910.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942917|ref|ZP_07849730.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314950863|ref|ZP_07853932.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314991488|ref|ZP_07856965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314994992|ref|ZP_07860112.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|77172782|gb|EAO75916.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|313590718|gb|EFR69563.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313593968|gb|EFR72813.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313596872|gb|EFR75717.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598389|gb|EFR77234.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313642961|gb|EFS07541.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|323479383|gb|ADX78822.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 397

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 110/346 (31%), Gaps = 49/346 (14%)

Query: 14  ERTRHGKIIYYFR-----KGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           ++ ++G   YYFR        G++I   R  +  +      Y   L      +    S  
Sbjct: 7   KKAKNGT--YYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLL----MKPEELSEN 60

Query: 66  KKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           K   T    I   +        + + +  +      +            I    +++   
Sbjct: 61  KDKMTFNHYIFEIFLPWYK-TQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQL 119

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  S   ++ +++ LF  A+ +  V      NP   +   K++   I  WTKE+ +
Sbjct: 120 KLSKKCKS--SYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFE 177

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN---------------- 220
           +  S   +    +      L+    +G+R  ++     + +  +                
Sbjct: 178 KVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQS 237

Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
               ++ +   ++  + L +  +  L+     ++      F ++ +         +   +
Sbjct: 238 DYRFVEPKTKASVRHIVLDECTLNYLSEWKKAQQNLIQTDFVMSYNGIPTQKHTLAHAIE 297

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A  A +++   HG+R   A++    G     +    G + ++  
Sbjct: 298 RYAKLASIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETT 343


>gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 171

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 5/154 (3%)

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +        + AF F  ++GLR SD        +               +  +      
Sbjct: 1   MNTPCRYELVKKAFLFSCFTGLRYSDMKALNWSEIHKAADGKTEYIDHIQVKTKDRVTIP 60

Query: 243 ---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
              +     P  +E          + +T   +  K     AG+ K    H  R  +AT+ 
Sbjct: 61  LSDETKKWMPKREEGIDNIFHNLTITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATML 120

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              GA+ + +    G K++   E Y K  D+ +L
Sbjct: 121 LTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKL 154


>gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 412

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 79/291 (27%), Gaps = 22/291 (7%)

Query: 79  RKSAHWGSLAVNSRISF---ESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS 132
             S      A+ +   +     + +  ++ +    DFD  +I    I       +     
Sbjct: 122 MHSLVGQEYAIGTFKRYEVLRRHTESFLKANFNTTDFDISRIDFAFIADYEFHLRSVRKM 181

Query: 133 AIQ----FLTSMRVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                   +   R +           +        +  K     +       + + +   
Sbjct: 182 GNNAVVKHMKMFRKIVNICLGNGWMSLDPYLNFKGKFKKVDKAILTKEELCLLSEKEFAS 241

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GF 241
              +Q R  F F  Y+GL  SD        +   I   +   T    T            
Sbjct: 242 DRLTQVRDTFLFCCYTGLAYSDIQSLERSDIARGIDGDQWIFTHRTKTNVKSHIPLLPEA 301

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + ++A                  +  + + + K  A   G++K  ++H  R   AT    
Sbjct: 302 LAIIARYNDDPACESRGLVLPVPSNQKMNDYLKEIAVVCGIDKILTSHVARHTFATTITL 361

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSR-RISSVVDSDD 347
             G     +    G   +   + Y K  D      ++  + R++S   +  
Sbjct: 362 QNGVPIESVSKMLGHTNIRTTQIYAKILDLKVSEDMQALKGRLASKTGAGR 412


>gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. A1055]
 gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Kruger B]
 gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Vollum]
 gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family protein [Bacillus anthracis str. Australia 94]
 gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
 gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 301

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 96/282 (34%), Gaps = 25/282 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           LK L+ E+       + +  +  ++          +       D   + T HI+  V+  
Sbjct: 2   LKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQ 61

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +     + S+R  +K+ V +EYV++N    ++  K   E I+ +T +++ +  
Sbjct: 62  ISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMI 121

Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----------NIFSIKTQKT 229
             +       ++ ++     + +G+R S+        + +              +     
Sbjct: 122 EAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIYDTSLRIKGKGSKWRHVPMSLM 181

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKS 285
                +       K      +  + +F++   + +   Q     K    +AG    +  S
Sbjct: 182 LKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRCS 241

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H VR ++   +   G   +      G + +   + Y +G +
Sbjct: 242 PHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLE 283


>gi|85717132|ref|ZP_01048091.1| probable integrase protein [Nitrobacter sp. Nb-311A]
 gi|85696023|gb|EAQ33922.1| probable integrase protein [Nitrobacter sp. Nb-311A]
          Length = 424

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 96/370 (25%), Gaps = 44/370 (11%)

Query: 21  IIYYFRKGHGR-----RIRLP--YPHESTFIPAYMS---ALTGSTPKREYINSPRKKPTT 70
            +  +R G GR     R  +            A      A            +  +   T
Sbjct: 43  YVVVYRAGSGRGAPVRRYTIAAVGKITPERARARAKVILAAVAHGHDPANQKTAERGVPT 102

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
           +  L   +            +   +    D+I     G     K+T   +     S   T
Sbjct: 103 VAELADRFVTDHVRAKRKAGTAEFYRDILDRIVKPAVGTTKADKLTRLQVGRLHSSLADT 162

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--------------- 174
           P  A + L  +  ++ +A R   V      +    K K      +               
Sbjct: 163 PFQANRVLAVVGSMYAFAGRAGIVPEGISPARGIDKFKESRRERFLTSEELERLGSAIRE 222

Query: 175 ---------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                          T + M + K           A   LL++G R  +      +H+  
Sbjct: 223 AETTGIPWSVDETKPTAKHMPKAKRSTRIAPSAAAALRLLLFTGCRLREILHLRWEHVDF 282

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               +    + +     + +     +  T      + +  D  +         +     +
Sbjct: 283 ERGCLFLPDSKSGRKTIILNAPALAVLSTMDRLGPYVVPGDNPERPRRDLKRPWDGVTKR 342

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           +G+     H +R   A+  A  G     +    G         YT    D +R   +   
Sbjct: 343 SGLTGVRLHDLRHTYASFGAGGGLGLPIIGRLLGHAQSATTARYTHLDNDPLRCASEAIA 402

Query: 338 -RISSVVDSD 346
            RI++ +D  
Sbjct: 403 GRIAAAMDGR 412


>gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum
           NCC2705]
 gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein
           [Bifidobacterium longum NCC2705]
          Length = 276

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 81/274 (29%), Gaps = 7/274 (2%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +  P   +  I+ + +S     L+ ++  +         R   D     +T++ +    
Sbjct: 5   KKLPPAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCL-DKSPYDVTSEDLVHWT 63

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+     +   +  ++   F+W       A +P  ++  PK +     P    D+  + 
Sbjct: 64  ASQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAAL--PKVRKTRPHPRPCPDVHIYA 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +  +     RL       +GLR S+      + +            G      +      
Sbjct: 122 AMCAANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISED 181

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           L           F    +  +  +  S                H +R   AT   +    
Sbjct: 182 LAKRITAAPGWLFPGRWRGHVEKSYVSRHLTRLLPD---GWGPHSLRHRYATRMYETTHD 238

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
              +    G  +V+  + Y    D R+R+G+   
Sbjct: 239 LLLVSKLLGHSSVETTQIYVAMPDSRLRVGLDAV 272


>gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406]
          Length = 308

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 90/300 (30%), Gaps = 33/300 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY-RKITTKHIRSGVESRKH 128
           ++ +I  ++       +  +S  ++     + ++   G+     ++  +        +  
Sbjct: 7   IEEIIHLWKADKKMY-VKKSSFSAYMLLLENHLLPVFGNKYVVEEVEVQTFVFQKLQQGL 65

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +  +    L  ++++ K+  + +++  +P       +R+ + I   ++ D ++   +  E
Sbjct: 66  SQKTIKDMLIVLKMVLKFGAKNKWLTYHPFDIQFPTQREKQTIEVLSRGDQRKVMHYVQE 125

Query: 189 GSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
               R L     L +G+R  + C    + +      I  ++T   I           L +
Sbjct: 126 HFTFRNLGIYICLSAGIRIGEICALTWEDVDTERGIIHIRRTIQRIYNIEDGMRKTELML 185

Query: 248 TPIGKETFFINNDK--------------------------QKMNATQFSIWFKAKATKAG 281
                +                                  +      +  ++K    +  
Sbjct: 186 DTPKTKNSIREIPMSGDLLKMLKPVKKIINNSFFVLTNDVKPTEPRTYRSYYKKLMKELA 245

Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338
           +     HG+R   AT   ++      +    G   +      Y     ++ +  I    +
Sbjct: 246 LPDLKFHGLRHSFATRCIESKCDYKTVSVLLGHSNISTTLNLYVHPNLEQKKKAIDQMFK 305


>gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3]
 gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 25/284 (8%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI 119
            TL  L+  + +          A  +  ++      +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIKTEFKVSDLAFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     +K    +   +L+ ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFCLEKKKLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRENLFQDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEALALIGKYRDDTRITLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R    T++  AG     +    G   +D  + Y +  DR 
Sbjct: 346 YHMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRK 389


>gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 431

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 29/290 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+ + I        R  ++ R    S+    
Sbjct: 121 RSRAEGTYLNLFYSDRNLREFVENKGVQDISIETITEDLFEEYRFFLKKRGLKASTVNSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   K    E    RL
Sbjct: 181 LCWLSRLMFRAVSKRIIRCNPFENAKFEKEEKKIRFLQKSDVMKLMAMKMNDKEAELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL  SD      +H+Q         +     T       +  +A T I    
Sbjct: 241 MFVFSCFTGLAISDMENLEYKHIQTAADGQMYIRKERQKTKVEFIVPLHPIAETIISHCQ 300

Query: 255 F---------------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
                                 +  + +             G+    S H  R    T+S
Sbjct: 301 KEPERSEVQQTVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSYHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             AG     +    G  ++   + Y +  DR     ++  R+ +   + +
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDRK--ISEDMDRLIAKQSAKE 408


>gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319]
 gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319]
          Length = 385

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 25/301 (8%)

Query: 57  KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            +E      +   TL  L     EY++     +L+  +  +F+  +   +      D   
Sbjct: 41  LKERYMQQSRPMPTLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRAD 100

Query: 114 ITTKHIRS---------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
                +            +   ++  SS    L  +  + + A+++ YV  +P     +E
Sbjct: 101 CMPTEVDKTLLEDYRLFMLRDLENKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 160

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +     + +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 161 TPTYERNSLTVDDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGD 220

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +           +   +     + F+   +    
Sbjct: 221 GRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGLLFREFP-TNSHFNRKIRDIII 279

Query: 279 KAGVNKS----AHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+       +H  R   AT I  + G     +    G + +   E Y K   + ++  
Sbjct: 280 KAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKGKIAR 338

Query: 334 K 334
           +
Sbjct: 339 E 339


>gi|257897301|ref|ZP_05676954.1| phage integrase [Enterococcus faecium Com12]
 gi|257833866|gb|EEV60287.1| phage integrase [Enterococcus faecium Com12]
          Length = 346

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 90/327 (27%), Gaps = 30/327 (9%)

Query: 17  RHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + GK        +R G  +++             +   +     + + +     + TT  
Sbjct: 6   KRGKSYRAQVSLYRYGEHKKLT-KTFATKKEAQLWSLEMELVKGEGKELA---HRTTTFA 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +        +   +  ++      I +   D   + +    ++  ++     H+ 
Sbjct: 62  DFFENWIYLVKVNDVKETTFQNYVRTLGIIRKLFQDIQLKDLNDIVVQKKIDEYAKTHSR 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187
            +  + L  ++   + A  + Y+A +    V+               T     +      
Sbjct: 122 KTTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGENPPKRNKALSITDFRKLRNYVLQH 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVE 236
              +  +     L +G+R  +      + L      ++            +       V 
Sbjct: 182 PEDEFNVLVLLALETGMRRGELLAIRPESLYEYGIEVRHSISPTSDDTSLKTQNAKRDVS 241

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
           +     +L+   P+ +  +  +    K +             K  +NK+  HG+R   A+
Sbjct: 242 INKEVYELVRRIPVKENGYIFSFGGFKQSEQ-----LTDLLEKLDINKTTFHGLRDTHAS 296

Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322
                      +    G   +   + Y
Sbjct: 297 FLFAQDIDITYVSKRLGHINIQTTQNY 323


>gi|159902922|ref|YP_001550266.1| site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9211]
 gi|159888098|gb|ABX08312.1| Site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9211]
          Length = 327

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 103/319 (32%), Gaps = 16/319 (5%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R GK      RK   +  +       +    + +A+ GS  +   ++ P   P  LK  I
Sbjct: 6   RSGKGWQALIRKKQYQGPKAKTFSSKSQAQLWANAVEGSLKRPTQLDQP--PPQILKEAI 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESR--KHTPSS 132
             Y         + +   + +     +     G     +++ +H     + R  K  P++
Sbjct: 64  DLYIDGPLQKHRSGH---NEQYPLRAMANSWMGGVLLSEMSIRHFALWRDERLLKVKPNT 120

Query: 133 AIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWT--KEDMQQFKSFWSE 188
            ++ L  +RVL  WA  +    +  NP   ++        I   T  +E     +   ++
Sbjct: 121 VMRELRILRVLLDWAKDEQGCLLKSNPARELKVRGTHDARIPHLTKQQEQDLLQQLAQAK 180

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                   +  L +G+R S+        L  ++  +   +             +  L+  
Sbjct: 181 NPNHLRLTQLALATGMRRSELLSMKWDDLDLDLRLVCLTRKDCAAQGMQRSERLVPLSPQ 240

Query: 249 PIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
            +    +          +++      F      AG+N    H +R  + +     G  A 
Sbjct: 241 AVELLAQYPKEQQHIIGLSSGSARHGFDRARKAAGLNQLRFHDLRHIAISKMWAEGMNAL 300

Query: 306 ELMATYGWKTVDQAETYTK 324
           ++ A  G K +     Y+ 
Sbjct: 301 QISAISGHKDLRMLMRYSH 319


>gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733]
 gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733]
          Length = 391

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/373 (10%), Positives = 95/373 (25%), Gaps = 61/373 (16%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
            +R              +   + G     E       K  T++  + ++  +    ++  
Sbjct: 16  RKRFIKKGFKSHEEAERFAKIVEGEIA-SEEYTQKNPKNLTIEKFMDDWINNYKM-NVKE 73

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQFL 137
            +RI   +     I    G +   K T    +  +                + ++A    
Sbjct: 74  GTRIVHRANIKMYITPYIGKYKLDKYTRADHQRFINQLLTKKGLGRTKEGLSVTTAKSIN 133

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++   FK A++  Y+  NP   VE P+  ++  +       Q          +    + 
Sbjct: 134 ATLSNAFKKAIQLGYIKNNPTSFVEFPRNPSDKKKVKYYTFDQSELFLEFAKKEKSFIWY 193

Query: 198 FLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------------T 231
                    GLR S++       +  +  ++   +                         
Sbjct: 194 PFFLIIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSG 253

Query: 232 IITVELPDGFMKLL------------------AMTPIGKETFFINNDKQKMNATQFSIWF 273
             ++ +     K L                            +  N    +     +   
Sbjct: 254 TRSLPMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFIFINTYGKNKGIPIRDRTVNGAS 313

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIR 330
                +A +   + H  R   A  +  AG    ++    G K V   + Y   +   + R
Sbjct: 314 HRIEKRASLPHITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKR 373

Query: 331 LGIKNSRRISSVV 343
              +    I   +
Sbjct: 374 SMNQLENYIEEQI 386


>gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 323

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 85/313 (27%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+ + R+       ++ +  ++  +  + I   G      +    + + +          
Sbjct: 9   LLDQVRERCRVRHYSLRTEQAYTHWIRRYILFHGKRHPLDMGAPQVEAFLTHLAVQEDVA 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+  Q L  +  L++       + +     V R K+         +++++   +     
Sbjct: 69  PSTQNQALAGILFLYR---DVLGIELPWLDGVTRAKKPPRLPVVLNRDEVRALLA--QLD 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------------------------- 222
               L    +  SGLR  ++ R  V+ +                                
Sbjct: 124 GMYWLLASLMYGSGLRLMEALRLRVKDVDLERREVTVREGKGGKDRRTMLPGTLVEPLTR 183

Query: 223 --------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                +    +           +  L   +  G +       + 
Sbjct: 184 QREKVAAIHALDRDNNLAAVYLPHALSRKYPNAGKELAWQFLFPASQPGIDPRSGIRRRH 243

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++ +      K     AG+    S+H +R   AT   + G     +    G   V   +
Sbjct: 244 HLHESAVQRAIKGAVRAAGILKPASSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRTTQ 303

Query: 321 TYTKGADRIRLGI 333
            YT   +R  L +
Sbjct: 304 IYTHVLNRGGLAV 316


>gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
 gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483]
          Length = 409

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 86/277 (31%), Gaps = 29/277 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
             A ++   +      +           D  + ++T + I        E +     +A  
Sbjct: 128 DRAKSTYPGYHYMRLALGEFIKHQYKVKDLAFGQLTEQFIHDYQTFVTEDKGQAIDTARH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---- 191
           +L  ++ + + A ++ +           PK+     R  ++E  ++ +       +    
Sbjct: 188 YLAILKKICRLAYKEGHADKIHFQHFTLPKKTETTPRALSRESFEKIRDVEIPAYRKSHM 247

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLL 245
             R  F F  Y+G+  +D       +LQ +         + +K     +V+L    + L+
Sbjct: 248 LARDMFLFGCYTGVSYADVVSITHANLQTDGDGALWLKYRRKKNELRASVKLLPEAIALI 307

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGA 302
                          +            KA A  AG+      H  R   A++   +AG 
Sbjct: 308 NKYSSEDRETLFPLLRWP----NLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGV 363

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               +    G   +   + Y + + +     ++  R 
Sbjct: 364 PIETISRMLGHSDISTTQVYARVSPKK--LFEDMDRF 398


>gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 342

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 84/294 (28%), Gaps = 43/294 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTK 117
           L+   +EY        L+ N+  S++  F  + +                D DY  I   
Sbjct: 13  LEQFFTEYM--PFSSGLSPNTIRSYKHSFRLLFQYIYQVQKKNADEILFRDLDYETID-G 69

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWT 175
            ++     R  + S+    L+++     +A  + + A     +     P +K       T
Sbjct: 70  FLKWIETERGCSASTRNLRLSALASFSFYAQNRNFEAATVFANAVRRTPVKKEAIQPRIT 129

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
               +          Q RL F   +   L  +   RA              +    +   
Sbjct: 130 FSLDEVSVLLHLPNPQKRLGFRDQVLLNLMYASGARAQEICDLKVRDFFVEKNLYKLTIT 189

Query: 236 ELPDGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKA--KA 277
              +   +++   P                  +   F +    +M  +     +K     
Sbjct: 190 GKGNKTRRIVIAKPSGILLKRYLEETGRAGQLETYIFSSQTHPQMTISCVEEIYKKYIAL 249

Query: 278 TKAGVN-------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +AG          + H +R  +AT   +AG     +    G  ++   E Y +
Sbjct: 250 ARAGHPGMFLEKRYTPHTMRHTTATHMLEAGVPIVAIKNFLGHSSISTTERYAE 303


>gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium
           intracellulare ATCC 13950]
          Length = 209

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 263 KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +++        +  A +AG+    S H +R   AT   + GA    +    G  +V   +
Sbjct: 128 RLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 187

Query: 321 TYT 323
            YT
Sbjct: 188 IYT 190


>gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
 gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC
           8239]
          Length = 338

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 88/296 (29%), Gaps = 48/296 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128
            ++  +     +  L   S   +E     + +   D         +  +HIR+ ++  K 
Sbjct: 14  DVLDTFMTDCKYRDLRRASIRLYERSLKLLFKFLEDDYKLIYVEDVKEEHIRNYIKFTKE 73

Query: 129 TPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
                                          +   ++ ++++ FKW V  +Y+  NP   
Sbjct: 74  RGKYSYVSNDNNLDINSPQNRGDFGQPISLCTLDSYVGTIKMFFKWCVDNKYLKQNPTNK 133

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           ++R K      +  T ++  +             +  +  + LL +G+R  +        
Sbjct: 134 IKRIKFSRNPKQEVTIDEFNKLLQNLDLTLFSEYRDYVIIQLLLDTGMRIGECLELKEDD 193

Query: 217 LQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------ 266
           +     +I              V   +   + L    I K+ +  +      N       
Sbjct: 194 VDIRNKTIFISAEIAKGRKDRYVFFSNIMQRTLEKWLIYKDRYVGSEYLFVTNRGSKYQI 253

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             F    +    +A ++K  + H +R   A     +G   + L    G  +V   E
Sbjct: 254 HSFEKHMRNYLKRARIDKKITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309


>gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 320

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 86/283 (30%), Gaps = 35/283 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP--- 130
           E+  +         +R ++++         G     D+R++T  H+ +     +      
Sbjct: 31  EWFANLDNR----RTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAG 86

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++  + L ++  LF   +    V        +   R +              +       
Sbjct: 87  ATIRRKLAALASLFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPD 146

Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
           E    G + R     LLY GLR  ++ +  V  +Q        +  G             
Sbjct: 147 ESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPV 206

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
               I + L      L         +    +    ++A       +A A KAG+      
Sbjct: 207 AAGRIHLYLERSEHHLADRKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVAGLG 266

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            HG+R  +AT + +  A   ++    G   +     Y +  +R
Sbjct: 267 VHGLRATAATNALEHEADIAKVQVWLGHANISTTRIYDRRQNR 309


>gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 397

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  ++    E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTIKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++            +  K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 273

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 77/270 (28%), Gaps = 14/270 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +  S      +  +  +       +    G      +    +     S++  P
Sbjct: 10  WAEYINGWLDSLKAAGYSTATLHTRRCQMTAMGNALGGSPL-DVGGNGLVGYFASKEWKP 68

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F+W    +    +P   +   +R     RP   + +    S      
Sbjct: 69  ETRKSARNATVSFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSK--AND 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAM 247
           + +L        GLR S+        + ++      I          V LPD    L+  
Sbjct: 127 EEQLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGLYDKQRLVPLPDDLADLITA 186

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                         +       + +     ++     + H +R   AT + +A      +
Sbjct: 187 HHDYLFPGRWQGHVE-------ASYIGKHLSRLLDGWTTHSLRHRYATRAYEATHDLLLV 239

Query: 308 MATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
               G  +V+  + Y    D R+R G++  
Sbjct: 240 SKLLGHASVETTQRYVAMPDERLRAGLEAV 269


>gi|301630209|ref|XP_002944215.1| PREDICTED: putative prophage CPZ-55 integrase-like [Xenopus
           (Silurana) tropicalis]
          Length = 465

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 123/394 (31%), Gaps = 58/394 (14%)

Query: 10  FVTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIP------------------AYMS 49
            +     R G I   Y +R    R   +   ++ T                         
Sbjct: 46  GLYVTVLRTGNISFRYDYRLNGRRETLVIGQYDPTLAARKPREVATLEYGMLLSLAEARL 105

Query: 50  ALTGSTPKREYINSPRKKP----------TTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
            L  +    E  +SP +             T      +Y   A    LA ++R   ++ +
Sbjct: 106 LLANARRTIEQGDSPSRAKVEKRVEANEGMTFGGWAEKYFAEAK---LAESTRAMRKAVY 162

Query: 100 DQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           D+ +  + G     +IT   + +  E  K    P+ A+Q    +  +F++   +     N
Sbjct: 163 DRNLATEFGRLKLEEITPSRLMARCEKIKERGAPAPAVQSRDIVLQIFRFVQARGLRIEN 222

Query: 157 PCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCR 211
           P  ++            R  + E++ ++ +   E    +  RLA +F+L + +R S+  +
Sbjct: 223 PAEAIRPSAIAAFKVRDRALSPEEIHKYFNALEEVSSAATLRLAVKFMLLTMVRKSEFTQ 282

Query: 212 AGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           A  + +              K      V L    + +L             +  +  +  
Sbjct: 283 AKWEEVNFETGVWTIPKERMKASRPHNVYLSQQAIDILVAFKTCYGASPYLHPGRYESDF 342

Query: 268 QFSIWFKAKATKAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             S     +   AG              + H +R+ ++T+  +AG  +  +      +  
Sbjct: 343 PMSNGTLNRLVVAGTEVIVARGEEFEPFTVHDLRRTASTLLHEAGFNSDWIEKCLAHEQR 402

Query: 317 DQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
                Y K   A++ R  ++    +      + P
Sbjct: 403 GVRAVYNKAEYAEQRRAMLQAWADMVDTWIVNGP 436


>gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)]
          Length = 293

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      K  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVKRAAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 90/295 (30%), Gaps = 28/295 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLAFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + +   +   +L  ++ + + A ++ +         + PK+K    R  +
Sbjct: 168 RDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      +  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        KA    AG+  +  
Sbjct: 287 -RRKKTDYLGRVKLLPEAVALIEKYRDDTRETLFPPQDYHTLRGNMKALRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H  R   A++   + G     +    G   V   + Y +     RL  ++  R 
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYAR-VSPKRL-FEDMDRF 398


>gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
 gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris
           AB-18-032]
          Length = 290

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 90/277 (32%), Gaps = 40/277 (14%)

Query: 94  SFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRV 142
           ++    D+ +      G  D   +    I   +   +           SSA +  +++R 
Sbjct: 2   AYRRDLDRYLNSLAAAGVSDLAAVPAGEIERHLARLRAGDDGHPPLAASSAARAASAVRG 61

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----------SEGSQP 192
           L ++A+R+   A +P   V  P       R  + +D+ +                   + 
Sbjct: 62  LHRFALREGLAAADPSRDVRPPTPPRRLPRALSLDDVVRLLDAAGPVQAAGDTAPLALRD 121

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           R   EFL  +G R S++    V  +   +       K G    V +    M+ L    + 
Sbjct: 122 RALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPIGGYAMQALGAYLVR 181

Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294
                          F+N+    +      +  +  A +A +        S H +R   A
Sbjct: 182 ARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDGPQAVSPHTLRHSYA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330
           T   D GA    +    G  +V   + YT    DR+R
Sbjct: 242 THLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 278


>gi|254470612|ref|ZP_05084016.1| phage integrase family protein [Pseudovibrio sp. JE062]
 gi|211960923|gb|EEA96119.1| phage integrase family protein [Pseudovibrio sp. JE062]
          Length = 415

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 87/350 (24%), Gaps = 45/350 (12%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLI 75
           + Y   +G   R+ L    E T   A   A+       +           +   T+  L+
Sbjct: 43  VQYRTLEGRSCRLTLGKYGELTPDQARGLAVDVLAKVRNGEDPTVNRKIIRNAPTVDDLL 102

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
             Y            S +      ++ + +  G      +T + I     S + TP  A 
Sbjct: 103 DMYLSEHVEVHNKPKSAVEIRRILERCVRKPLGKAKLASVTRQDISKLHRSMRRTPRQAN 162

Query: 135 QFLTSMRVLFKWAVRQEYVAINP--------------------------------CLSVE 162
             L  +   F  A        +                                      
Sbjct: 163 HVLAIISKAFNLAEIWGLRPEHSNPVRLVKRYKENERDRFLTGDELQRLGKTLELAEKEG 222

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P                  K             + LLY+G R  +      +H+     
Sbjct: 223 LPWIIKAKPENRKHLRHDIEKRRTPVNPMALYCLKLLLYTGARLMEIASLEWKHVDFEEG 282

Query: 223 SI--KTQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAK 276
           +I   ++K        +    + +L+  P           IN+  + +        ++  
Sbjct: 283 AIALPSKKGDGRKPHPVSGNVLDILSDIPRLDGSPYVLARINDPTRHITKELVENAWQRV 342

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              A +     H +R    T +A +G+ A  +      + V     Y   
Sbjct: 343 RHHADIPDVRIHDLRHTVGTFAAQSGSNAFLISHLLRHRNVTITNRYVNH 392


>gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 328

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 94/302 (31%), Gaps = 16/302 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R  +  +   +     AL+    K     S   +P  L+ LI  +  +  +G  
Sbjct: 20  RQGKRVRRRFDTKHEAVLFERYALSNKMHKDWLDKSNDIRP--LQDLIDLWWNT--FGKS 75

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144
           +  ++ +      +I     +     +T K +    E R      PS+  +  +++  +F
Sbjct: 76  SEYAQDTLLRA-TRIATALDNPPMCLLTDKQLALYRELRLAAGIKPSTINRDFSAISGIF 134

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
               R +       +      ++      +   +         +G   ++A    L +G 
Sbjct: 135 TALKRTDLFMGKHPIRGLSRLKQKATEMSYLTHEEIGLLLNILKGDNKKVAILC-LSTGA 193

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  ++ +   +H+  N       KTG    V +                T          
Sbjct: 194 RWGEAVKLKREHVIQNKIRFTFTKTGKARIVPISQEVAD-------KVCTRKSGLLFPNT 246

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +   F    K         ++ H +R   AT     G +   L    G  T+ Q  TY  
Sbjct: 247 SYDMFRKHIKTIKPDMPQGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAH 306

Query: 325 GA 326
            A
Sbjct: 307 FA 308


>gi|152983145|ref|YP_001352184.1| phage integrase family site specific recombinase [Janthinobacterium
           sp. Marseille]
 gi|151283222|gb|ABR91632.1| site-specific recombinase, phage integrase family
           [Janthinobacterium sp. Marseille]
          Length = 328

 Score = 93.3 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 84/309 (27%), Gaps = 14/309 (4%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
             R      +             +         +            T+   +  Y  +  
Sbjct: 15  RVRIKGNPELS-KTFSTKAAAVHWADEQERLVKQGRGSAILLANNLTITAALDRY--ARE 71

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
              L    +                    ++    +    + R       ++    L  +
Sbjct: 72  VTPLKKGWKQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSDGLGANTVRLELALI 131

Query: 141 RVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAF 196
             +++ A++   + +  NP   + +PK      R  T+ +      +  +      RL  
Sbjct: 132 SHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLEYCKKKGAALLRLVI 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              L + +R  +      +++  +   I   +T      ++P           +      
Sbjct: 192 ILALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRRA---QKELENYLCG 248

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
            + +   ++    S  F       G+   + H +R  + +   + G    E+ A  G KT
Sbjct: 249 KHGELVPLHPDNISGAFSQACKVCGISGLTLHDLRHEATSRLFEKGFNMMEVAAITGHKT 308

Query: 316 VDQAETYTK 324
           +   + YT 
Sbjct: 309 LTMLKRYTH 317


>gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 411

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 102/288 (35%), Gaps = 21/288 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      N +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
              G     + +  G K++   + Y K         ++   +++ ++S
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMENLAARLNS 402


>gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 292

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 87/283 (30%), Gaps = 25/283 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           ++ E++        ++N+  S+       ++  G  +      +   +I S         
Sbjct: 4   IVEEFKTHIMEDGKSINTIQSYVGDVSAFLKYLGTMNVEFDGVLKRFYITSYKNYLIDNS 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------M 179
           + P++  + + S+     + + + Y+  N     +   +   G     +           
Sbjct: 64  YEPATINKKVNSIGAFNNFLIWKGYMQENVIDLKKDRVKIAVGSEHQVEVYSDNQLERLQ 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238
              ++      + ++  + L+++G+R S+ C   ++++   +  IK    G  +  V   
Sbjct: 124 FYIQNQKKVSIRDKMIIQLLMFTGVRVSELCDIKLKNIDFLLSQIKIIGKGGKVREVPAK 183

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAG--VNKSAHGV 289
              M  +      +      + +        ++     +   +    +    +    H  
Sbjct: 184 FEAMDTIEEYISERNNNPYKDSEFLILGQRGEIQRDAVNTLLEKHTVRGNFEMKLKPHTF 243

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
           R    T     G     +    G  +++     Y   +   ++
Sbjct: 244 RHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKEEKM 286


>gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 336

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 31/287 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR---KHTPSS 132
           S      +  S+ +  S    +    G      FD+  +T   I+  ++        P++
Sbjct: 29  SYLLRLRSKKSQKTMRSCLTSVSSMFGCNEPLHFDWSSLTRDMIQVVLQRLLNEHKAPNT 88

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSE 188
               L +++ + + A     +  +    V+  KR         R     +++Q  +F   
Sbjct: 89  INLILCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECAEIKQLFTFLDI 148

Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242
            +     +       +   GLR S+     + H+   N       K        +P    
Sbjct: 149 QTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPPETA 208

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN-KSAHGVR 290
           K + +               ++                    K   TK  +   + H +R
Sbjct: 209 KRMCLWVDSVRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKSFTPHDLR 268

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +  A++  + G     +    G  +V   + Y K     RL      
Sbjct: 269 RSYASLLLENGEDILTVKEALGHASVVTTQQYDKR-SIKRLEAAALN 314


>gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
 gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp.
           M62/1]
          Length = 286

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 73/254 (28%), Gaps = 6/254 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  YR        + ++   +        +   +          +       K+  SSA 
Sbjct: 16  MEAYRIYLMESEKSPSTIEKYLRDIRNFYQFLPEEKIIDREAVLLYKRQLIPKYQISSAN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++     +   +E + +             E      +      ++     S+  L
Sbjct: 76  SMIIAVNGFLSFMGLEE-LRVKVFKFQRAMVSDPEREIQREEYIRLVEEAERMGKSRLSL 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             + L  +G+R S+      + + +   ++  +    ++ +         +        +
Sbjct: 135 ILQTLGATGIRISELVCITREAVSSGRAAVNLKGKMRVVILPKRLREKMEIYCRENQIYS 194

Query: 255 FFINNDK--QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
             +   +  + ++ +      K     AG+N+     H +R   A I          L  
Sbjct: 195 GPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARIYYKNNHDIVYLAD 254

Query: 310 TYGWKTVDQAETYT 323
             G  +V+    YT
Sbjct: 255 ILGHSSVETTRIYT 268


>gi|324989602|gb|EGC21547.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK353]
          Length = 421

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 112/373 (30%), Gaps = 70/373 (18%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAH 83
              G+++       +  +     A+  +  + E   S R+K     TL+ L  E+ KS  
Sbjct: 36  IKTGKQVT--TTITAKTLKQLDRAIIQARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYK 93

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT------------- 129
               + N+      Y  + II K GD+   KI +  I+  +                   
Sbjct: 94  TWVNSHNTLNRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNDLAKKSKESIESGVKRAD 153

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KE 177
             SA      +  ++ +F + +    +  NP +SV+ P +     +              
Sbjct: 154 KGSAKDFGAVIHKLKDIFDYGITNYGLITNPVVSVKIPPKPKSNKQRIMVLHDDSLVVWL 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +  +         + +L    LL S LR ++     +  L                    
Sbjct: 214 NYLESLDNTRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANK 273

Query: 222 ---------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------- 263
                         +      +V +P   ++ L         +   +++ +         
Sbjct: 274 KDGTKGEVICKATPKTDAGNRSVPVPLPIIEKLIDFHNEMNKYLELHNRHRTRLIFPTIY 333

Query: 264 ---MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              M         K +    G+     H  R   A++  +AG    EL    G K++   
Sbjct: 334 GNYMCDRNERTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTT 393

Query: 320 E-TYTKGADRIRL 331
             TY + A + +L
Sbjct: 394 MDTYAELAPQRKL 406


>gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4]
 gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 76/303 (25%), Gaps = 50/303 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            +++ R+       ++ +  ++  +    I          +    +   +    ++ + A
Sbjct: 8   FLTQVREHMRMRGYSIKTEKAYLYWIKAFINFQQKRHPETMGQAEVTQFLSFLANSRNVA 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           I           +   +        L      ++ +     + E++ +         + +
Sbjct: 68  INTQKVALNALVYLYHKHLKQDLGDLGFRYATKQRQLPIVLSTEEVSEVLC--QLNGRDQ 125

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
           L  + L  SGLR S+  R  +Q +       +++  K        L       L      
Sbjct: 126 LIVQLLYGSGLRVSECLRLRIQDIDLARCSLTVRNGKGHKDRQTILSQKCAIKLPAYIDA 185

Query: 251 -------------------------------------------GKETFFINNDKQKMNAT 267
                                                          +   + +  ++ +
Sbjct: 186 ARAIQIKDNTYCIGPSLPNALERKYPNAFRQAGWMFVFPSTTTSDNPYTKTHCRHHLHQS 245

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  A   K  +    + H  R   AT    AG     +    G   V+  + YT  
Sbjct: 246 VIRKALAAAVRKTHIIKRVTCHTFRHSFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHV 305

Query: 326 ADR 328
             +
Sbjct: 306 LGQ 308


>gi|290891631|ref|ZP_06554685.1| hypothetical protein AWRIB429_2075 [Oenococcus oeni AWRIB429]
 gi|290478745|gb|EFD87415.1| hypothetical protein AWRIB429_2075 [Oenococcus oeni AWRIB429]
          Length = 347

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/333 (7%), Positives = 89/333 (26%), Gaps = 19/333 (5%)

Query: 16  TRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            + GK                   ++S F+    + +              +    L   
Sbjct: 5   KKRGKYYQARVSYRDPVTGEFRTKNKSGFLKTKDAQIWVGQVLSGKQQEKEQPDILLSDY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132
              +  +    + +  +   +      I +       +  T  + ++ + +  + H   +
Sbjct: 65  FENWYLTYRV-NRSNQTIYQYRDTLHTIKKYLPTMTLKSFTRSNFQTFINNFGKDHAEKT 123

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSE 188
             +    +    K A+ +E +  +P + +              +     + ++      +
Sbjct: 124 VQKRKGQISAALKDALAEELIIKDPTIRIGLVYNNATKVPIENKYLELNEAEKLIDHCIK 183

Query: 189 G-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFM 242
             S+        L SG R  +        +              + T      +  +   
Sbjct: 184 NLSRGNFMILTGLLSGARFGELRALTDADIDTKKHLISITKAVDKFTNKDKAPKTKNSIR 243

Query: 243 KLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
           +++      +      ++ ++   M +   +   K    K  +   + H +R   A++  
Sbjct: 244 EIIMPDKWFEVYSDFKHNDKRLFDMTSNGINKDLKYLCEKLEIKHVTFHALRHTHASMLL 303

Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
               +   +    G   +    + Y+   +  +
Sbjct: 304 AHDISMQYVSGRLGHANLSITEQVYSHLLEEKK 336


>gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302]
 gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302]
          Length = 411

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 99/287 (34%), Gaps = 21/287 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRSLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCEDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
              G     + +  G K++   + Y K       +       R+S +
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLVARLSGI 403


>gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410]
          Length = 344

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 100/314 (31%), Gaps = 38/314 (12%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           +     ++    S  +K    +++   + ++    ++  ++  S +  FD  I++  GD 
Sbjct: 1   MEADIQEKGLQASTAQKSKKFEYVYGLWFENYK-KTVKESTWSSTKQIFDTHILKVFGDK 59

Query: 110 DYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--- 165
              KI     +  V +   + P    +       +F +A   + +  NP   V  P+   
Sbjct: 60  FIDKIDVFFCQEAVNTWSDSHPKIFKKIKNYTSNVFDYAASLQIITSNPMKLVSIPRGEA 119

Query: 166 --RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIF 222
              + + I  +TKE++ +F          R  F  LL ++G+R  ++       +     
Sbjct: 120 LDIEDKNIEFYTKEELIEFLEAIRNDDDERYLFFSLLAFTGIRKGEAFALTWSDIDFKSK 179

Query: 223 SIKTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK-----------ET 254
           ++   KT T                    + L +  + LL                    
Sbjct: 180 TLNINKTVTRGYQGRLIVNTPKSKSGKRKIYLDNDLISLLRKYYTKNKTIVTIQSENLIF 239

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                      +  +         +     + HG R   A++  ++GA+  ++    G  
Sbjct: 240 HHDGLLYNPTVSRSWLNVIYKHHPELTKRITTHGFRHTHASLLFESGASLKDVQERLGHA 299

Query: 315 TVDQA-ETYTKGAD 327
            +      YT   +
Sbjct: 300 DIQTTSNIYTHVTE 313


>gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica
           WH47]
          Length = 301

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 92/308 (29%), Gaps = 31/308 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G+     R   G R           +     A             P      ++ L   
Sbjct: 15  NGQPWRDARGRDGPRH---------AVETEFKAEHAIVDLSTQPPKPLVVKCLVRELRIR 65

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +         A ++  ++ S +   +R        +I  + IR  +E   +  +SA +  
Sbjct: 66  FY--------AASTIKNYRSAWVCFLRWY-RGPLDQIDQEDIREYLELLVNGGASASEVS 116

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L     +   +     + +  P++  +     +K+++Q+         + +L   
Sbjct: 117 VTLSALRTGLDKFCLL--RCTVGLVSPRKSKQLPVVMSKKEVQRMMEAA-RTLRDKLLLT 173

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI----- 250
            L  +GLR ++  R        +   I+ Q  K      V L D  + L+          
Sbjct: 174 VLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRRTKGV 233

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307
                       + ++        K     +G+ K  + H  R   AT   ++G     +
Sbjct: 234 GYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFI 293

Query: 308 MATYGWKT 315
               G   
Sbjct: 294 QKLLGHTN 301


>gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606]
 gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606]
          Length = 431

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I+   I        R  ++ R    S+    
Sbjct: 121 RSRAEGTYLNLFYSDRNLREFVENKGVQDISIGTITEDLFEEYRFFLKKRGLKASTVNSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   K    E    RL
Sbjct: 181 LCWLSRLMFRAVSKRIIRCNPFENAKYDKEEKKIRFLQKSDVMKLMAMKMNDREAELARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  SD      +H+       ++  K ++   +  +       + +     
Sbjct: 241 MFVFSCFTGLAISDMENLEYKHIQTAAYGQMYIRKERQKTKVEFIVPLHPIAEAIINHCR 300

Query: 251 GKETFFINN-----------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
            ++                   +  + +             G+    S H  R    T+S
Sbjct: 301 SEKRRSEEQQTVKEKDDNLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AG     +    G  ++   + Y +  D+ 
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDKK 392


>gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506]
 gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506]
          Length = 334

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 263 KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +   Q ++  K  A  AG++    S H +R   A+     GA    +    G   +   
Sbjct: 248 HITRQQVALDLKDLALAAGLDPSKLSPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTT 307

Query: 320 ETYTKGADRI 329
           + YT   D  
Sbjct: 308 QIYTHVLDER 317


>gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila]
 gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli]
 gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli]
 gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila]
          Length = 334

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 96/283 (33%), Gaps = 32/283 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+ + + +  G     D  +  +   H+++ ++    +   P++   +L +
Sbjct: 53  SKRSRQTMGSFLNIVAKMIGFQNLRDCAWSSMRRHHVQAVIQILSDSDRAPATINTYLAA 112

Query: 140 MRVLFKWAVRQEYVAINPCLSVER---------PKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +   A   + +  +    +++         P  +                   S+G 
Sbjct: 113 LKGVALEAWTMKQIDTDSYQHIKQVRSVRGSRLPNGRALEKHEVRALYFTCENDRSSKGL 172

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +       L+  GLR S+     ++ +     +++   K        +PDG  + L    
Sbjct: 173 RDAAILAVLVGCGLRRSEVVALDMECVITREQALRVLGKGNKERIAYVPDGAWQRLMRWV 232

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297
                        +   F +    +M         + +  +AG+ K + H +R+  A+  
Sbjct: 233 NEVRGEQPGALFQRIRRFDDVTADRMTDQAIYHILETRRIEAGLEKFAPHDLRRTFASAM 292

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            D G     +    G  +V   + Y +  D      + SRR+ 
Sbjct: 293 LDNGEDIITVKDAMGHASVTTTQKYDRRGDER--LKQASRRLE 333


>gi|16612085|gb|AAL27448.1|AF430807_13 Int410 [Enterococcus faecalis]
          Length = 396

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 114/346 (32%), Gaps = 49/346 (14%)

Query: 14  ERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           ++ ++G   YYFR        G++I+       T   A   A +    +    +   +  
Sbjct: 8   KKAKNGT--YYFRINLGYDRAGKKIQKYKSGFKTIKEA-REAYSKILLEEPSDSISEETE 64

Query: 69  TTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              +  + E    + K+     + + +  +  +   +           KI   H++    
Sbjct: 65  MLFENYLEEIFLPWYKT----QVKIRTYENRLNSIRKHFTYFYKLPVNKIEPLHVQKWQS 120

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T  +   ++ +++ +F  A+ +  V      N    V   K++   I  WTKE+ +
Sbjct: 121 KLFETLRA--SYIRNIQGIFSIAMDRAVVLGLADKNASKIVGNVKKQKTEIEFWTKEEFE 178

Query: 181 QFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQN----------------- 219
           +  S   +         ++F FL  +G+R  ++     + +                   
Sbjct: 179 KVISCIYKEDYYQHFLYISFWFLFMTGMRIGEATAIQWEDINFETGVLKINKTLYYKNLN 238

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFK 274
               ++ +   +   + L +  + LL      + +     F ++ +         S    
Sbjct: 239 YYEFVEPKTKASTRFIVLDEDTLLLLKEWKEIQNSVVKTGFVMSYNGSPTQKYTISYAIT 298

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +  AGV++   H +R   A++    G     +    G + ++  
Sbjct: 299 RFSKLAGVHRIKIHALRHSHASLLIRMGENPLIIKERLGHEDIETT 344


>gi|116513206|ref|YP_812113.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108860|gb|ABJ74000.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 349

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/321 (8%), Positives = 85/321 (26%), Gaps = 17/321 (5%)

Query: 17  RHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G+  +  R     HG++ ++     +       +        +    + R    T   
Sbjct: 6   KRGQKSFRARVSIMEHGKQKQVTKTFTTKSEAKTWAHQQEVLKGKGKNIAKR--EDTFSD 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               +  +     +   +  ++      +     D     +    ++  ++     H+  
Sbjct: 64  FFDTWVNTVKRNDVRPATFTNYVRTVTIVRSLFKDIKISNLDDLVVQMKIDEYGKNHSRK 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKSFWSE 188
           +  + L  +R    +A  +  +  +    V+   +   K        +  + +       
Sbjct: 124 TTTEVLLKIRTALHYAYARGLLDNDFGSLVKTRGKELEKRNKPLSINEMKVLRNYLLSHS 183

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKL 244
             +  +     L +G R  +      + + +N   I          T +        + +
Sbjct: 184 EDEFNIITLIALETGARRGEILGLKPEDISSNGIHITRSISPTNDDTRLKTSKSKRTVPI 243

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKS-AHGVRKFSATISADAG 301
                    +    ++    +   F      K    +  ++ +  HG+R   A+      
Sbjct: 244 TYEVYTIIRSVEPKSNGYLFDPDGFQQSKRLKKLLAELKISITTFHGLRDTIASFLFSND 303

Query: 302 ATAHELMATYGWKTVDQAETY 322
                +    G   +     Y
Sbjct: 304 IRLDYVSKMLGHSNLQTTMNY 324


>gi|319775387|ref|YP_004137875.1| Prophage integrase [Haemophilus influenzae F3047]
 gi|309751677|gb|ADO81661.1| Probable bacteriophage integrase [Haemophilus influenzae R2866]
 gi|317449978|emb|CBY86190.1| Prophage integrase [Haemophilus influenzae F3047]
          Length = 351

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 94/321 (29%), Gaps = 21/321 (6%)

Query: 17  RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G   +       G RIR           A            +  +  +K P   +  +
Sbjct: 5   KRGSTYWLDITTPSGERIR-RSTGTEVKKKAQELHDKIKAELWDMAHLNKKPPKLFEEAL 63

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKHT 129
             + + A           +   +        G +    IT + I +          +  +
Sbjct: 64  LLFVEDAKLKK----DFDTNRRHAIYWRSVFGGWKLSDITGEDIMTNLPTYSTTHKKPLS 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+  ++ TS+  +   A +  ++   P +       + +    W  ++           
Sbjct: 120 PSTKNRYRTSILRVLSLAYKNGWIDRIPYVKK---FVEPKVRVRWITKEQATTLISNLNL 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLL 245
           +  +    F L++G R ++        +                     + L +  + LL
Sbjct: 177 AWMKNVCSFALFTGARMTEILSMTWDKVDFERSIAIVSNDVAKSGKARALPLNNTALDLL 236

Query: 246 AMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303
                 + + F+ +        +     F     K+ ++    H +R   A+    AG  
Sbjct: 237 QKLYQTRRSEFVFHRGTDKQIGRIDWHDFHQALEKSNIHNFRFHDLRHTWASWHVQAGTP 296

Query: 304 AHELMATYGWKTVDQAETYTK 324
            + L    GW+T++  + Y  
Sbjct: 297 LYTLKEMGGWETLEMVKKYAH 317


>gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism]
          Length = 294

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 77/294 (26%), Gaps = 25/294 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              ++  ++    P T   L+ + R        +  +  ++  +  + +   G    R++
Sbjct: 3   EAYQDRTDTATIPPNTPPRLLDQVRGILRAKHYSYRTEQAYVHWIRRFVLFHGKRHPREM 62

Query: 115 TTKHIRSGVESRKHTPSSAIQFL---------------TSMRVLFKWAVRQEYVAINPCL 159
            T  +   +      P+ A + L               + +R +  +      +      
Sbjct: 63  RTAEVERFL--LGAGPAVAGKMLPRAPRSRRLPVVLGRSEVRSILAFVEGTPGLVAGLLY 120

Query: 160 SVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                  +   +R       +       ++G + R+       +    +   R  +    
Sbjct: 121 GGGLRLLEALRLRVKDVVFERSTLVIRDAKGGKDRVTILPDAMAMPLRAHVARLHIWFDL 180

Query: 219 NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                V    G+  +     + ++ +     +  ++        
Sbjct: 181 ERQRGAPGVSVPGALARKYRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAV 240

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           K    +AG+    S H  R   AT   + G     +    G   V     YT  
Sbjct: 241 KQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294


>gi|28198888|ref|NP_779202.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182681588|ref|YP_001829748.1| integrase family protein [Xylella fastidiosa M23]
 gi|28056979|gb|AAO28851.1| phage-related integrase [Xylella fastidiosa Temecula1]
 gi|182631698|gb|ACB92474.1| integrase family protein [Xylella fastidiosa M23]
 gi|307580023|gb|ADN63992.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 410

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 111/363 (30%), Gaps = 37/363 (10%)

Query: 19  GKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGS---------TPKREYINSPRK 66
           G I++ FR    G   ++ L      +   A +     +           +++       
Sbjct: 34  GGIVWRFRYRLAGRYEKLTLGKYPALSLRNARLKRDEAASLVAMGTSPARQKQLAKVTAA 93

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
              T++     + +         ++      Y D+ I+   GD   R++T + IRS +  
Sbjct: 94  DAMTVRDFAERFFREIQSRDRKDSTMP--RRYLDKDILPFVGDKPMREVTAEEIRSLIWR 151

Query: 126 RKHTP--SSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           +K     ++A Q    ++ L  +              L +    +     R  + ++++ 
Sbjct: 152 KKEQGFDATAGQIRGVLKRLCDYAVTCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRL 211

Query: 182 FKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
           F          R   LA   +L + +R S+   A   H+  +          +       
Sbjct: 212 FLRAVWASRIRRQFKLALHLILLTMVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHI 271

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                   +    +++LA              +        +          G++  + H
Sbjct: 272 VYLSRQAVVLFEALRVLAGGSALVMPGSGTLTR-PFAHNALNHALGKAMQWQGIHAFTIH 330

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVD 344
            +R+ ++T   + G  +  +              Y +   AD+ R  ++  +  I   + 
Sbjct: 331 DLRRTASTWLHEHGWASDVVEKALNHSIGGVRGVYNRAEYADQRRQMLQCWADFIEKQLK 390

Query: 345 SDD 347
           +D 
Sbjct: 391 TDH 393


>gi|323128246|gb|ADX25543.1| DNA integration/recombination/inversion protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 421

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 103/384 (26%), Gaps = 70/384 (18%)

Query: 28  GHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
             G+++   +            + A      +  +         TL+ L   + +S    
Sbjct: 37  KTGKQVTTTITAKTLKQLDREVIQARL-DFERNGFTRKEVISIATLEDLAEAWFQSYQTW 95

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQ- 135
             + N+      Y  + II K GD+   KI + +I+  +                 A + 
Sbjct: 96  VSSHNTLNRVRGYLDNYIIPKFGDYKPDKIESANIQLWLNDLAKKSKKSVESGVKRANKG 155

Query: 136 -------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KEDM 179
                   +  ++ +F + +    +  NP  +V+ P +     +              + 
Sbjct: 156 SAKDFGAVIHKLKDIFDYGITNYGLTANPVSTVKVPPKPKSNKQHIMVLHDDSLAMWLNY 215

Query: 180 QQFKSFWSEGSQPRLAFEFLLY-------------------------------------S 202
            +         + +L    LL                                      +
Sbjct: 216 LENLDNSRANRRFKLICNTLLASALRINELLALTIDDLNFEESSISVNKTLLWKTANKKT 275

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G +    C+A  +    N            +     +    L        +  F      
Sbjct: 276 GTKGEVVCKATPKTDAGNRSIPVPLSILEELQDFHNEMNKYLKLHNRPETKLIFPTIYGN 335

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            M         K +    G+     H  R   A++  +AG    EL    G K++     
Sbjct: 336 YMCDRNERTTLKKRLAGLGLPDYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMD 395

Query: 321 TYTKGADRIRL-GIK-NSRRISSV 342
           TY + A + +L  +     +++ +
Sbjct: 396 TYAELAPQRKLEAVDIYLDKLAEL 419


>gi|254721127|ref|ZP_05182918.1| phage integrase [Bacillus anthracis str. A1055]
          Length = 381

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 105/351 (29%), Gaps = 45/351 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
              F+  + ++ +               A      K          PT+LK  + ++ K 
Sbjct: 14  RVRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEITPTSLKHYLRDWLKL 73

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
               ++  N+ I  E      II    + + +++     +  + S      S  + +  +
Sbjct: 74  FKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINSLTDQGYS-KRTVQII 132

Query: 141 RVLFKWAVR--------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 A++        +        +S +  K +       +++     K+ +      
Sbjct: 133 HGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSEDIPLFLKTSYQYNYIY 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIIT 234
            + F+ LL +G+R  ++     + +     +I                    +   +  T
Sbjct: 193 YIFFKALLNTGMRKGEAAALQWKDINLKEHTIIISKTLDFTAKTKEELFGDTKTFTSKRT 252

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQFSIWFKAKATK 279
           + +P   +  L      +    +       +                +     F     K
Sbjct: 253 IMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKK 312

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           A + +   H +R   A +  ++GA+   +    G K+++     Y+  +D+
Sbjct: 313 ANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|167760042|ref|ZP_02432169.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
 gi|167662335|gb|EDS06465.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704]
          Length = 331

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 15/298 (5%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
              +     R    +    + EY  S      +  +   +     +++    +   R IT
Sbjct: 37  EISQEKRELRVPDRSWAIDLEEYLMSKALEGKSPGTVDRYRYELQRLLSYV-NKAVRDIT 95

Query: 116 TKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              I    R+    R+ +  +           F W   ++ +  NP   VE  K + +  
Sbjct: 96  EGDISGYMRAYKAIRQVSNQTLKNVRAVYSSFFAWLRDRDRIRRNPMALVEAIKVEQKIR 155

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTG 230
           +P+T E+ +          + +   EF   + +R S+        ++      I   K  
Sbjct: 156 KPYTDEEREMLL-RNCSTLRDKAMMEFFYSTAVRVSELVTLNRDDIRFTSKDLIVFGKGS 214

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK 284
               V L D     +      +                +++ T      +    +AGV K
Sbjct: 215 KERRVYLNDRTNLYMKEYLDSRTDGSPALIVSIRRPHSRLSKTGIEDIIRRTGQRAGVEK 274

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              H  R+ S T + + G    E M   G    +    Y    D+  +   + + +S+
Sbjct: 275 AHPHRFRRTSLTNALNRGMPLQEAMVMAGHAKPETTMGYC-TVDQEGVKYHHQKYLSA 331


>gi|125719073|ref|YP_001036206.1| phage integrase family integrase/recombinase [Streptococcus
           sanguinis SK36]
 gi|125498990|gb|ABN45656.1| Integrase/recombinase, phage integrase family, putative
           [Streptococcus sanguinis SK36]
          Length = 421

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 104/374 (27%), Gaps = 72/374 (19%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TLKWLISEYRKSAH 83
              G+++       +  +     A+  +  + E   S R+K     TL+ L  E+ KS  
Sbjct: 36  IKTGKQVT--TTITAKTLKQLDRAIIRARLEFEKNGSTREKVIVIDTLEDLAEEWFKSYK 93

Query: 84  WGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT------------- 129
               + N+      Y  + II K GD+   KI +  I+  +                   
Sbjct: 94  TWVNSHNTLNRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNGLAKKSKESIESGIKRAD 153

Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KE 177
             SA      +  ++ +F + +    +  NP  SV+ P +     +              
Sbjct: 154 KGSAKDFGAVIHKLKDIFDYGITNYGLITNPVSSVKIPPKPKSNKQRIMVLHDDSLVIWL 213

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------- 221
           +  +         + +L    LL S LR ++     +  L                    
Sbjct: 214 NYLESLDNNRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANK 273

Query: 222 ----------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
                                   +       +            L      K  F    
Sbjct: 274 KDGTKGEVICKATPKTDAGNRSVPVPLPIIEKLRDFHHEMNLYLELHNRHRTKLIFPTIY 333

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                +  +     K +    G+     H  R   A++  +AG    EL    G K++  
Sbjct: 334 GNYMCDRNE-RTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSIST 392

Query: 319 AE-TYTKGADRIRL 331
              TY + A + +L
Sbjct: 393 TMDTYAELAPQRKL 406


>gi|329935594|ref|ZP_08285404.1| putative phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329304939|gb|EGG48809.1| putative phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 408

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/410 (11%), Positives = 99/410 (24%), Gaps = 82/410 (20%)

Query: 14  ERTRHGKIIYYFRK------------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           +R  +G+   Y RK              G + R      +         LT    K +  
Sbjct: 4   KRNPNGEGTIYLRKDGRYEGAGYVLMPDGTQKRRRVYGRT--WEETRKKLTAMLAKSDQG 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                    L   ++ +        +  ++  S+    +  I+ + G     +++ K +R
Sbjct: 62  IPAADTTENLGSYLAYWLDHVVQHKVRASTVYSYSKCVNAYIVPRLGKKKLARLSAKDVR 121

Query: 121 SGVES---------------------------------RKHTPSSAIQFLTSMRVLFKWA 147
             ++                                  +  +P         +R   + A
Sbjct: 122 LFLDWARQACQCCVQGQDAARPPAKRRCCALSPKRCCDKHLSPRMVQYLHAVLRNALQHA 181

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           VR+E +  N    V+    +    R  + E+ ++         +   A+   LY GLR  
Sbjct: 182 VREEMIQRNVAKLVQVQTPRYRVGRGLSAEEAKKLL-AEVRDDRLSAAYVLALYLGLRRG 240

Query: 208 DSCRAGVQHLQ------------------------------NNIFSIKTQKTGTIITVEL 237
           +        +                                 +   +            
Sbjct: 241 ELLGLHWADVDLEGGSLEIRTALQRVDGALALTAPKTRRSERPVPLPRVCVDALRRHRAG 300

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                             F       +     +  F     + G+    H +R    T+ 
Sbjct: 301 QHAERVAAGERWRESGFVFTTRLGTAIEPRNLNRHFYPVRERLGLEVRFHDLRHTCVTLL 360

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
              G   H +    G   +D     Y       +       R+ S++D D
Sbjct: 361 LGLGIPPHIVRDIVGHSALDVTMNIYAHADMTEKRA--ALDRLGSLLDDD 408


>gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46]
          Length = 409

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 107/400 (26%), Gaps = 73/400 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    Y +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNKSTAYRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
             +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 DIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAKTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEESEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNI 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 NIENKTLEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N K               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
                + A  G        + YT   D  ++      ++ 
Sbjct: 363 INLKAIQARVGHSDYKTTLDIYTHVTD--KMAQDMMNKLE 400


>gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
 gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein
           [Rhodococcus erythropolis SK121]
          Length = 611

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 42/333 (12%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F +G G R                +A +   P+  +  +    P  +   +  Y      
Sbjct: 180 FHRGQGPRPHPRK---------RWAARS--VPEIGWDRAEECAPVMVAT-MRRYLDQIGI 227

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---------- 130
            SL V+S    E+   Q                I   HI +        P          
Sbjct: 228 -SLRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSK 286

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++    +  +   ++  +  +Y       P  S +RP +     R        +F +   
Sbjct: 287 TTIGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAAR 346

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  RLA E L  +G+R  +     +  +     +   +     +  +        L
Sbjct: 347 NLPDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQL 406

Query: 246 AMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                       +            + +  T+     ++ A  AG+ +   H +R   AT
Sbjct: 407 KTMIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLAT 466

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            + + G +   + A  G KT++    Y + ADR
Sbjct: 467 QAINRGMSLEAIAALLGHKTMEMTMVYARIADR 499


>gi|169834457|ref|YP_001693707.1| prophage Sa05, site-specific recombinase phage integrase family
           protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225860217|ref|YP_002741726.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|168996959|gb|ACA37571.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Hungary19A-6]
 gi|225728264|gb|ACO24115.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 388

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 126/386 (32%), Gaps = 64/386 (16%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +                 +   S 
Sbjct: 3   ITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQ--KEVKQKANQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K  T+K    L + + +S    ++  N++ + +    + I+   G +   K+TT  I+
Sbjct: 61  RQKAVTIKNYQELATLWLESYK-NTVKPNTQGNVKKLIDNHILPIFGAYKLDKLTTPLIQ 119

Query: 121 SGVESRK---HTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           S +       +    A      +     + + ++ V  + +  NP   V  P+   +  R
Sbjct: 120 SIINELADKTNRGEKAAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKR 179

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNI 221
              K    Q    +       +  + R  +E  LY     +G R +++       +  + 
Sbjct: 180 KKVKHFENQELKKFLGYLDNLDTHRYRYYYETTLYKFLLATGCRINEALALSWSDIDLDN 239

Query: 222 FSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI----------- 257
             +   KT                  +++    + +L    + +                
Sbjct: 240 AVVHITKTLNRDIEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRERVVFS 299

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +   +  ++++     +    +A V     HG R   A++  ++G    EL    G  T+
Sbjct: 300 DFIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTL 359

Query: 317 DQAE-TYTKGADRIRLGIKNSRRISS 341
                 Y+       L  +N+++  S
Sbjct: 360 SMTMDIYSH------LSKENAKKAVS 379


>gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3]
          Length = 316

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 69/302 (22%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSS 132
           L+   R +      +  +  ++  +  + I   G     ++    + S +         +
Sbjct: 17  LLDRLRDAIRRLHYSRRTEEAYIHWTKRFIYFHGKRHPSELGEAAVTSFLNYLATDRNVA 76

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + ++    + R KR        T++++++           
Sbjct: 77  AATQNQALSALLFLYKETLGMELDWLDGLVRAKRPQRMPVVLTRDEVERLLCA--LDGVQ 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN------------------------------NIF 222
            L    L  +G+R  +  R  V+ +                                 + 
Sbjct: 135 WLMASLLYGTGMRLMECLRLRVKDVDFGYGQILIRDGKGEKDRITMLPERLVGPLKDQMD 194

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------------- 268
             +      +            LA         +                          
Sbjct: 195 RARRIHDTDLREGFGEVHLPYALARKYPRAGFEWNWRYVFPSRNRSADPDDGVIRRHHLD 254

Query: 269 ---FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +  +  AG+      H  R   AT    AG     +    G   V     YT
Sbjct: 255 ESVLQRAVRTASRVAGISKPVHCHTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYT 314

Query: 324 KG 325
             
Sbjct: 315 HV 316


>gi|116512825|ref|YP_811732.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108479|gb|ABJ73619.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 393

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 101/373 (27%), Gaps = 59/373 (15%)

Query: 10  FVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            + + + + G  +Y            G   R  +   +  T       A+         +
Sbjct: 2   NIKEVQKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTV 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +        L + +  S     +  N+     ++    I+   G++   KITT  ++
Sbjct: 62  AREKVSFDNFNALATSWFDSYKLT-VKANTIRINSNFLKNYILPALGNYKVEKITTVLLQ 120

Query: 121 SGVESRKHTPSSA-----IQ----------FLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           + V       ++A      +           L  ++ +  + ++   ++ NP + V  PK
Sbjct: 121 NIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVISDNPAIKVFSPK 180

Query: 166 RKTEGIRPWTKEDMQ---------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            KT  ++     +                 +   +    ++ LL +GLR  ++       
Sbjct: 181 LKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTSLYKLLLATGLRICEALALSWSD 240

Query: 217 LQNNIF---------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------ 255
           +                        +   +   V +    + +L      +         
Sbjct: 241 IDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHD 300

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
               +  ++                KA V     HG R   A++  +      E+    G
Sbjct: 301 SLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLG 360

Query: 313 WKTVDQAE-TYTK 324
                     Y+ 
Sbjct: 361 HADYSITMNLYSH 373


>gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans
           2-40]
 gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40]
          Length = 373

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 80/306 (26%), Gaps = 59/306 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L  + R       LA  +  ++  +    IR +      ++T +H+ + +      R  +
Sbjct: 15  LFDKLRAHMRGRQLAYKTEKTYCYWIADFIRFNNMVHPDELTPEHVDAYLSSLAIKRNCS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +S    L ++  LFK  +++E   +    S +  K  T           +  +      
Sbjct: 75  VNSQKTALNALSYLFKRYLKRELGDLAYTPSSKHKKLPTV------FSHDEAMRVISHLQ 128

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK---- 243
              ++    +  SGLR  ++ R  VQ +        I+  K        LP   ++    
Sbjct: 129 GVHQVLVMLMYGSGLRVMEAVRLRVQDVDFANECLMIRESKGLKWRRTLLPKSLIEPLTI 188

Query: 244 ------------------------LLAMTPIGKETFFINNDKQKMNA------------- 266
                                    L +                 +              
Sbjct: 189 YRDIALARHKADLADGYGSVYLPNALNVKYPNASKEPAWQYMFPAHHLSTDPRSGVLRRH 248

Query: 267 ----TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      K    +A +      H  R   AT    AG     +    G   +   +
Sbjct: 249 HMGEQSVQRVVKIALKEARIYKKAGCHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQ 308

Query: 321 TYTKGA 326
            YT   
Sbjct: 309 IYTHVV 314


>gi|52141786|ref|YP_085044.1| phage integrase [Bacillus cereus E33L]
 gi|51975255|gb|AAU16805.1| phage integrase [Bacillus cereus E33L]
          Length = 381

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 105/351 (29%), Gaps = 45/351 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
              F+  + ++ +               A      K          PT+LK  + ++ K 
Sbjct: 14  RVRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEITPTSLKHYLRDWLKL 73

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
               ++  N+ I  E      II    + + +++     +  + S      S  + +  +
Sbjct: 74  FKQDNVRKNTFILHERNIEKHIIPYFQNMNIKELKPMMYQKFINSLTDQGYS-KRTVQII 132

Query: 141 RVLFKWAVR--------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 A++        +        +S +  K +       +++     K+ +      
Sbjct: 133 HGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSEDIPLFLKTSYQYNYIY 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIIT 234
            + F+ LL +G+R  ++     + +     +I                    +   +  T
Sbjct: 193 YIFFKALLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKEELFGDTKTFTSKRT 252

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQFSIWFKAKATK 279
           + +P   +  L      +    +       +                +     F     K
Sbjct: 253 IMIPKSLVDELLAHKKWQNANKLVLQDAYEHELDLVFSRVDGKFLPKSTLFNAFSRILKK 312

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           A + +   H +R   A +  ++GA+   +    G K+++     Y+  +D+
Sbjct: 313 ANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 344

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 91/299 (30%), Gaps = 32/299 (10%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGV 123
               +  + +        +  +  ++ +    +   +       +        +   +G+
Sbjct: 43  WAGAVEAFVRHLVAERDRSPETVRAYRADLAGLRAHAAAAGRTDLLDLDLAVLRGWLAGM 102

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S    P++  +  +  RV   +A R+ ++  +    +   +      +  T     +  
Sbjct: 103 RSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQADRLL 162

Query: 184 SFWSEGSQPR------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG- 230
                G + +            L  E L  S +R S+ CR  +  + +    ++    G 
Sbjct: 163 ETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVHGKGG 222

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINN---------DKQKMNATQFSIWFKAKATKAG 281
              +V         L +       +                +++        +A+   AG
Sbjct: 223 RQRSVPFSVPAAGALDVWLTRGRPYLATRVEAALLLGARGGRLDPRSVRRLVQARGAAAG 282

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           V    + HG+R  +AT   + GA    +    G  ++   + YT    +R+R     + 
Sbjct: 283 VPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAH 341


>gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478]
          Length = 346

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/324 (10%), Positives = 79/324 (24%), Gaps = 52/324 (16%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT--- 129
            + +         +  +  ++      + R   + D    ++    +   ++ +      
Sbjct: 24  ANAFLTHLAGRGFSAATVRAYAFDVANLARFLTERDVTLSEVQAPLVFDWIDWQGVRRTG 83

Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177
                    S+  + + ++R LF++         NP  S  R +      R         
Sbjct: 84  RPQPGSAAASTVNRRVAAVRALFEYLAMTGRRGNNPVPSPRRGQGLRRSERGLLGHLGPG 143

Query: 178 ---------------------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                                             + R     +L  GLR +++    +  
Sbjct: 144 RARPGGRLVRQPQLLPESLPASDIDAFVATLGSHRDRAMVLAMLLGGLRSAEARGLLLAD 203

Query: 217 LQNNIFSIKTQ-----KTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKM 264
           +      ++       +    +           L         TP              +
Sbjct: 204 VDMGRRRLRVIGKGGKERYVPVDAAFFTEVAAYLRLERPAGLSTPQCFVVLRGPTTGAPV 263

Query: 265 NATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +       F+     +G +    H +R    T  A AG     L A  G  + +    Y 
Sbjct: 264 SEAGLRSLFRRHRELSGSIRVRPHRLRHTYGTELASAGIDLLALRALMGHASPETTARYV 323

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
                 +L  +     +S+  +  
Sbjct: 324 H-LSLEQLAAEYGAARASLAGARR 346


>gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
 gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216]
          Length = 409

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++IT   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  + GL  SD      +++Q +        T         D  + LL +  +  + + 
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIIT--KRVKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3]
 gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 77/285 (27%), Gaps = 33/285 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESR---KHTPSSAIQF 136
            LA + R    S  + +++            +  +    I      +     +P +    
Sbjct: 13  RLAPSGRRPLRSQLNTVLKLFKWKGEVEALPFHTLNYAQIEYVKRHKLDEGKSPRTVNLV 72

Query: 137 LTSMRVL----FKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-----KEDMQQFKSFWS 187
           L +++ +    F   V  +            P   +   +  +     +     +     
Sbjct: 73  LFALKAIVKTGFLMGVVDDVQWRQVQAVKRLPINPSSRGKALSSSSVGQLITICYLDKRY 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLL 245
            G +        L +GLR  +     V  +  +  ++  +  K        +P   +  +
Sbjct: 133 IGKRDCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPIPTWALTYI 192

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSA 294
                                +    + +++       KA+   A G+  S H +R+   
Sbjct: 193 DNWLRVRTHQPGDLFNPIWNNVIKHDRGLSSAALYQIVKARTLAATGITISPHDLRRTFI 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           T   +            G   V   + Y K  +   +  +   ++
Sbjct: 253 TELLNQKVDLSTASKLAGHANVTTTQIYDKRDES--VMREAIDQL 295


>gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482]
 gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482]
          Length = 407

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 93/285 (32%), Gaps = 20/285 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
            ++ +        +        + +        +++ +  S    +       D++ +T 
Sbjct: 95  LKDAVKKKSAVNVSFSTFA---KSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTY 151

Query: 117 KHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIR 172
             +R   +  +   ++     + +  +R L   A+ Q Y+  +     +   K++     
Sbjct: 152 TFLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRKYKIKQEKGRHE 211

Query: 173 PWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSI 224
             T +++++ ++   E    R    AF F  Y+GLR SD C+   ++         ++  
Sbjct: 212 FLTPDELKKLETVEVEEKSMRHVLDAFLFCCYTGLRYSDFCQLTPENFIRVNGKRWLYFK 271

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
             +    I          + L +     +   + +       ++ +   +      G+ K
Sbjct: 272 SVKTGVEIRLPLHLLFESRALGILDRYPDIGSLVSLPCN---SEVNKQLRKLTGLCGIKK 328

Query: 285 SA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               H  R   AT+    G     +    G  +V   + Y++   
Sbjct: 329 RITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 373


>gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099]
 gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099]
          Length = 359

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 7/220 (3%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           + + T  ++   +  R ++ ++  + + ++  L + A +   +   P    ++ +     
Sbjct: 84  FDQSTLDNLIGTLRQRGNSNATINRKMAALSKLLRKAHKMGDIHSLPEFRRQKERAGRIR 143

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                +E               RL   FL+ SG R  ++       +Q +  S    K+G
Sbjct: 144 FLERDEEARLFAAIRGRSEDAYRL-SVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSG 202

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSA 286
              T+ + +   +++ + P             K++  Q+   +     + G+        
Sbjct: 203 RSRTIPMTERVKEVIKLPPTEGRRPKGPFT--KLSQAQYRAIWNDAKAEVGLGADDQVVP 260

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     +    G +T+     Y   A
Sbjct: 261 HILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA 300


>gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU144]
          Length = 405

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/399 (10%), Positives = 101/399 (25%), Gaps = 73/399 (18%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           K   +HG + Y + +          RR+ +    +           L      +    +P
Sbjct: 5   KFTNKHGDVQYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKLLNKRIEAKLNDKTP 64

Query: 65  RK-KPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ +           +     S  + +      +     IT  +++ 
Sbjct: 65  TTLKSLTFHAACDEWLEYYKNHSGSKATTIKEKISNTNTVKNAIDKEVLINNITHTYLQD 124

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-- 177
            +      H+       +  +R +FK+A +   +     L      +K +       +  
Sbjct: 125 IINEWAKLHSKGHVQSLVIIIRSVFKYAFKYYDLQDISVLDKIDIPKKAKTRDELQAKRN 184

Query: 178 -------------DMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                    ++ R         +F + +G R  +       ++ 
Sbjct: 185 NYLEESEVKELLSCFDYLIKHKKHSTRKRNYKMVKAIVQFQIANGTRIGELLAIKSDNIN 244

Query: 219 NNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                                       T+ + +  T+ L    + LL    +  +    
Sbjct: 245 YEDKTLDIDGTINWVTDKETGTFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQ 304

Query: 258 NNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302
            N+                ++  + +   K     + + K    H +R    +  A  G 
Sbjct: 305 WNEDFIDRSYIFTNTAGSPIDLNKINNIIKEATDISSIKKRVTTHTLRHTHISTLAQLGI 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
               +    G        E YT   D+  +     +++ 
Sbjct: 365 NLKAIQERVGHSDYKTTLEIYTHVTDQ--MAKNMMKKLE 401


>gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 87/264 (32%), Gaps = 22/264 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A+ +   +++    +           D    ++  + +R+        R+   ++ I
Sbjct: 130 KDYALITVRRYDNCKKYLNEVIRYKYAKDDLPLTEVNGELVRAFEFYLKTERECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
           +++  ++ +   A+  E++  NP L ++    K       T +++ +  +   E  +   
Sbjct: 190 RYMKCLKKIINLALSNEWITKNPFLGIKF-HEKEVIREFLTIDELMRIYNKEFELDRITL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246
            R  F F  ++GL   D  +   +H+  +       +     T  + +       M++L 
Sbjct: 249 VRDVFIFAAFTGLAFIDVQQLSAEHIIKDNNGHYWIRKARQKTNNMCNIPLLDIPMQILN 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGAT 303
                 +              + + + K  A    +NK    H  R   AT      G +
Sbjct: 309 KYSNNPQCLKKQVLLPVPCNQKMNSYLKEIADLCNINKRMSTHTARHSYATSVCLANGVS 368

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +   + Y K  D
Sbjct: 369 IENVAKMLGHSNIKMTQHYAKVMD 392


>gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 367

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 7/220 (3%)

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           + + T  ++   +  R ++ ++  + + ++  L + A +   +   P    ++ +     
Sbjct: 80  FDQSTLDNLVGTLRQRGNSNATINRKMAALSKLLRKAYKMGDIHSLPEFRRQKERAGRIR 139

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                +E               RL   FL+ SG R  ++       +Q +  S    K+G
Sbjct: 140 FLERDEEARLFAAIKSRSEDAYRL-SVFLVDSGCRLGEALGLIWNDIQEHRVSFWITKSG 198

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSA 286
              T+ + +   +++ + P             K +  QF   +     + G+        
Sbjct: 199 RSRTIPMTERVKEVIKLPPAEGRRPKGPFT--KFSQAQFRAIWNEAKAEVGLGADDQVVP 256

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   A+     G     +    G +T+     Y   A
Sbjct: 257 HILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLA 296


>gi|226940605|ref|YP_002795679.1| Site-specific recombinase, phage integrase family protein
           [Laribacter hongkongensis HLHK9]
 gi|226715532|gb|ACO74670.1| Site-specific recombinase, phage integrase family protein
           [Laribacter hongkongensis HLHK9]
          Length = 474

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 102/339 (30%), Gaps = 28/339 (8%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           ++K R ++G++ Y    R     R+         + +    +           ++I    
Sbjct: 4   ISKYRKKNGELSYQATVRVKQAGRVVFSATRSFPKESLARDWARRTEVEAASPDFITRHA 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T   L+  YR           S+  +      +     +    +++ + +    + 
Sbjct: 64  LGKMTFGDLLVRYRDELSGSGKIGRSKR-YVIDL-LLRSSISERPISELSAQDLVEHCKI 121

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKE 177
           R+     P +  Q +++MR +  +A R   + +     +  L V R +      R   + 
Sbjct: 122 RRDAGTGPVTVFQDVSAMRTVLDYAKRIWSLPVSTQPVDDALPVLRAQTLVSKSRQRDRR 181

Query: 178 DMQQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              +       G   R              +F + S +R  +  R     +      +  
Sbjct: 182 PADEELEQIYAGLAARQSRSNAQIPHVDIIKFAIASCMRLGEIGRIRWDDIDEKRRCVLI 241

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV-NK 284
           ++          D ++ LL       +     ++          S  F+      G+ + 
Sbjct: 242 RERKDPSNKYTNDQWIPLLGEAWDIVQRQPRTDELIFPYKMESVSAAFERTCAVLGIVDL 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R    ++  + G    E+    G K+ +    YT
Sbjct: 302 RFHDLRHHGVSLLFEQGLKIQEVAMVSGHKSWNNLRRYT 340


>gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1]
          Length = 145

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 262 QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           Q+M    F    K  A  AG++    S H +R   AT   + GA    +    G   +  
Sbjct: 63  QQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLST 122

Query: 319 AETYTKGADRI 329
            + YT  A   
Sbjct: 123 TQIYTHVATER 133


>gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4]
          Length = 611

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 42/333 (12%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F +G G R                +A +   P+  +  +    P  +   +  Y      
Sbjct: 180 FHRGQGPRPHPRK---------RWAARS--VPEIGWDRAEECAPVMVAT-MRRYLDQIGI 227

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---------- 130
            SL V+S    E+   Q                I   HI +        P          
Sbjct: 228 -SLRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSK 286

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++    +  +   ++  +  +Y       P  S +RP +     R        +F +   
Sbjct: 287 TTIGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAAR 346

Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  RLA E L  +G+R  +     +  +     +   +     +  +        L
Sbjct: 347 NLPDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQL 406

Query: 246 AMTPIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                       +            + +  T+     ++ A  AG+ +   H +R   AT
Sbjct: 407 KTMIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLAT 466

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            + + G +   + A  G KT++    Y + ADR
Sbjct: 467 QAINRGMSLEAIAALLGHKTMEMTMVYARIADR 499


>gi|228910502|ref|ZP_04074317.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
 gi|228849268|gb|EEM94107.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis
           IBL 200]
          Length = 406

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 105/363 (28%), Gaps = 45/363 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63
           P +        + ++ +R       G+R         +   A  S L   +   R     
Sbjct: 23  PEIYYYFNAKNEKLWMYRHKYYDNIGKRKEKKKSGFKSEKAALKSLLEVKAATIRGESKQ 82

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T+   +  +  +    S    SR   E     Q+    G +  + +     +  
Sbjct: 83  VEHDQMTIGEWLDTWYNTHK-NSWKPTSRAQREMAIRLQMKPLLGHYKLQTLDRTTYKRE 141

Query: 123 VE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +K+ PS+   F T  ++    AV  E ++ N    ++   ++T           
Sbjct: 142 FLNVLEKKYKPSTVHLFHTLFKIAINAAVEDEILSRNRFTKIKLSSQETLKEENNNYFTP 201

Query: 180 QQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGT 231
           +Q       +   E +        + Y+G+R  ++C    +++  +  +I   +T+    
Sbjct: 202 EQLVEFLSIAKREENATNYTFLLTVAYTGIRRGEACGLQWKNINFDNKTITIERTRDNKG 261

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------------KMNAT 267
           I + +  + +  +L    +  +                                  +  +
Sbjct: 262 IRSPKTKNSYRTILIDDVLVNQLSIYRKWCMETMLSFGYKLQDESFVFTSYQTGNPITDS 321

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                F+    K  +   + HG+R    TI  + G     +    G  T     E Y   
Sbjct: 322 SVLYAFRRVLNKTNLPSITIHGLRHTHCTILLNQGLNVKVIAERLG-NTPQMIYEIYGHV 380

Query: 326 ADR 328
              
Sbjct: 381 LKE 383


>gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 394

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/390 (13%), Positives = 103/390 (26%), Gaps = 64/390 (16%)

Query: 11  VTKERTRHGKIIYYFRK-----GHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINS 63
           + +   + GK  Y F+       +G+RI  R              + L    P       
Sbjct: 9   IKEYTLKSGKKRYMFQIYLGTNSNGKRIITRRRGFKSYAEAETVFNKLAQVKPDNFVKQK 68

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             K     K   + Y+ +    + A  + I++++    +    G+    +I  K ++   
Sbjct: 69  QIKVSELWKMWFNNYKDTVKGST-ANKTEINYKA---HVAPYFGNNYIDRIQVKDLQKWA 124

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
           +            L  MR L+++ +R  YVA N    +  PK+ T   R           
Sbjct: 125 DKLATELVKYRDVLFIMRSLYEYGMRLGYVADNELSRIIIPKKTTRKRRDTEHNFYSKEE 184

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------QN 219
                +       +    F+ L  +GLR  ++     + +                    
Sbjct: 185 LDTFLEVAKEVNIRVYAYFKLLSSTGLRKGEALALTWKDIDLINNTISVNKTISFGIGNK 244

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF----SIWFKA 275
            + +    K    I     +    LL      K            N            + 
Sbjct: 245 QVVNTPKTKQSKRIVPLSANLKQVLLDYRKSEKILSDKLFHTIAGNYVSLSKPTQWLSEV 304

Query: 276 KATKAGV---------------------NKSAHGVRKFSATISADA-GATAHELMATYGW 313
            A    +                     + + H  R    T+  +        +    G 
Sbjct: 305 YAKDHKINEKFAKENKLDENYVLNKDLRHITLHRFRHTFTTLLIENTNVKPKTVQMLLGH 364

Query: 314 KTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
             +    + YT   ++ +        IS +
Sbjct: 365 ANIQMTLDIYTHVNNKNK--EDAISSISQL 392


>gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191]
 gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191]
          Length = 355

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 16/278 (5%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122
           K+ T       +Y  +  +      ++       +   R         I  K +      
Sbjct: 66  KEKTLWGAYCRDY--TDKYSIQDKTTKRFVNKAIEDFNRIIAPKYLIDIDEKSVSKFVSE 123

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++       S  +    +  + + A   +            PK K    R          
Sbjct: 124 MDKEGRGKYSINRERRVIIKMLREAEEIKDYNYPKHSWKLVPKFKEAKGRLIKYSKDHLK 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           K + +  S  + A     Y+G+R  +  +A    +  +   I  QK    I  +  D  +
Sbjct: 184 KLYKNADSMLKAAIMLGSYAGMRVEEVFQAEWTDVNWDRGVIYVQKKENYIPKDYEDREI 243

Query: 243 KLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
            LL                       +          S  F+  A + G+  +  H +R 
Sbjct: 244 PLLKPLRQYLLKNKGSSKNTHIVAFKDGSSPKTPEVISALFRRLAHELGIPYTKFHLLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + SA+ G     +    G   ++    Y    +  
Sbjct: 304 NFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIHDTEAK 341


>gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
 gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756]
          Length = 397

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N   +   A  ++
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYN 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 320 MLFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9]
 gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9]
          Length = 180

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 11/173 (6%)

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPD 239
                ++  + ++ F  L   GLR  +     V  +  +     I+  K G    V +P 
Sbjct: 1   MLISMTKQKRYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQ 60

Query: 240 GFMKLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
             +  L    +              N    M+        K      G+NK  S H +R 
Sbjct: 61  RTLNALRAHWLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRH 120

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVV 343
             AT   + G     L    G  +++    YT+    + R       R++  +
Sbjct: 121 CFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADAL 173


>gi|15609796|ref|NP_217175.1| phiRv2 prophage integrase [Mycobacterium tuberculosis H37Rv]
 gi|148662501|ref|YP_001284024.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|148823850|ref|YP_001288604.1| phiRv2 prophage integrase [Mycobacterium tuberculosis F11]
 gi|167967175|ref|ZP_02549452.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|215404625|ref|ZP_03416806.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|215412458|ref|ZP_03421200.1| integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428087|ref|ZP_03426006.1| integrase [Mycobacterium tuberculosis T92]
 gi|215446918|ref|ZP_03433670.1| integrase [Mycobacterium tuberculosis T85]
 gi|218754399|ref|ZP_03533195.1| integrase [Mycobacterium tuberculosis GM 1503]
 gi|219558668|ref|ZP_03537744.1| integrase [Mycobacterium tuberculosis T17]
 gi|253798259|ref|YP_003031260.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435]
 gi|254232768|ref|ZP_04926095.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C]
 gi|254365323|ref|ZP_04981368.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551713|ref|ZP_05142160.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187679|ref|ZP_05765153.1| integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289448314|ref|ZP_06438058.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289553554|ref|ZP_06442764.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605]
 gi|289570833|ref|ZP_06451060.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17]
 gi|289746460|ref|ZP_06505838.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289751310|ref|ZP_06510688.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92]
 gi|289758787|ref|ZP_06518165.1| integrase [Mycobacterium tuberculosis T85]
 gi|289762830|ref|ZP_06522208.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503]
 gi|294994246|ref|ZP_06799937.1| integrase [Mycobacterium tuberculosis 210]
 gi|297635270|ref|ZP_06953050.1| integrase [Mycobacterium tuberculosis KZN 4207]
 gi|297732266|ref|ZP_06961384.1| integrase [Mycobacterium tuberculosis KZN R506]
 gi|298526131|ref|ZP_07013540.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776941|ref|ZP_07415278.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001]
 gi|306780842|ref|ZP_07419179.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002]
 gi|306785466|ref|ZP_07423788.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003]
 gi|306790064|ref|ZP_07428386.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004]
 gi|306798562|ref|ZP_07436864.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006]
 gi|306804424|ref|ZP_07441092.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008]
 gi|306807539|ref|ZP_07444207.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007]
 gi|306968713|ref|ZP_07481374.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009]
 gi|306973054|ref|ZP_07485715.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010]
 gi|307080762|ref|ZP_07489932.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011]
 gi|307085356|ref|ZP_07494469.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012]
 gi|313659599|ref|ZP_07816479.1| integrase [Mycobacterium tuberculosis KZN V2475]
 gi|81556700|sp|P71956|INT2_MYCTU RecName: Full=Putative prophage phiRv2 integrase
 gi|1550700|emb|CAB02359.1| PROBABLE phiRv2 PROPHAGE INTEGRASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124601827|gb|EAY60837.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C]
 gi|134150836|gb|EBA42881.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506653|gb|ABQ74462.1| integrase [Mycobacterium tuberculosis H37Ra]
 gi|148722377|gb|ABR07002.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis
           F11]
 gi|253319762|gb|ACT24365.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435]
 gi|289421272|gb|EFD18473.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A]
 gi|289438186|gb|EFD20679.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605]
 gi|289544587|gb|EFD48235.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17]
 gi|289686988|gb|EFD54476.1| integrase [Mycobacterium tuberculosis 02_1987]
 gi|289691897|gb|EFD59326.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92]
 gi|289710336|gb|EFD74352.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503]
 gi|289714351|gb|EFD78363.1| integrase [Mycobacterium tuberculosis T85]
 gi|298495925|gb|EFI31219.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214684|gb|EFO74083.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001]
 gi|308326345|gb|EFP15196.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002]
 gi|308329888|gb|EFP18739.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003]
 gi|308333504|gb|EFP22355.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004]
 gi|308341179|gb|EFP30030.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006]
 gi|308346032|gb|EFP34883.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007]
 gi|308348986|gb|EFP37837.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008]
 gi|308353711|gb|EFP42562.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009]
 gi|308357551|gb|EFP46402.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010]
 gi|308361496|gb|EFP50347.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011]
 gi|308365102|gb|EFP53953.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012]
 gi|323718743|gb|EGB27903.1| phiRv2 phage integrase [Mycobacterium tuberculosis CDC1551A]
 gi|328458031|gb|AEB03454.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 4207]
          Length = 375

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 105/372 (28%), Gaps = 36/372 (9%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREY 60
           T   +   F    +   G+    +    GR  I     +      A+++       ++ +
Sbjct: 4   TGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLW 63

Query: 61  INSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116
             +  ++             + K      +   +R  +     + I+    D D R IT 
Sbjct: 64  SPASGQEDRPGAPFGEYAEGWLK---QRGIKDRTRAHYRKLLDNHILATFADTDLRDITP 120

Query: 117 KHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +R    +    TP+      + +R + + A+  + +  NPC  +          +   
Sbjct: 121 AAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCR-ISGASTARRVHKIRP 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--- 232
               +      +     +       +  +R  +      + +  +    + ++       
Sbjct: 180 ATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGE 239

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSI 271
                          + +P   +  +                    N+  + +  +    
Sbjct: 240 GFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYR 299

Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            F      AG  +   H +R   A ++A  GAT  ELM   G  T   A  Y   A  R 
Sbjct: 300 MFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRD 359

Query: 330 RLGIKNSRRISS 341
           R       +++ 
Sbjct: 360 REIAALLSKLAE 371


>gi|325977283|ref|YP_004286999.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177211|emb|CBZ47255.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 378

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/383 (10%), Positives = 116/383 (30%), Gaps = 63/383 (16%)

Query: 15  RTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
             ++G   +     +G         R IR  +  +   + A     +    +R +     
Sbjct: 3   VKKNGNNGWLVDVSNGFNPVTLKQRRIIRKGFKTKKEALEAEQYLRSVELKERYFG---- 58

Query: 66  KKPTTLKWLISEYRKSAHWGSLAV----NSRIS-FESYFDQIIRKSGDF------DYRKI 114
               T+  L   + +     +       N++ + +  +      K  D       D+   
Sbjct: 59  -AKITMDMLY-AFLREEDIINHRKQSYINTQENNYNRHIKHYFEKVTDVSKLQYDDFYDF 116

Query: 115 TTKHI--RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               I   S    +  +P++  + +  ++ +    VR+ +   NP   +++       + 
Sbjct: 117 REHLIGTISKNTKKPLSPNTINKIMILLKKIMDIGVRKGFYPSNPVTLIKKLPIDKPKLN 176

Query: 173 PWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------- 221
            WT  + + F   +  E    +L F+ L ++G+R  +        +  +           
Sbjct: 177 YWTVSEFKDFLELFTPEEYHYQLLFKVLYFTGMRLGEVLALNWNDIDFSRNTIAVSKSVY 236

Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------------FFINNDKQ 262
                 +    +   +I  + +    M  L +    +                   N   
Sbjct: 237 FKKGVSYISTPKTKASIRQIVINAKLMNELEVWQHKQYELLRQFSNDDCSDLQLFQNSPI 296

Query: 263 KMNATQFSIWFKAKATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
            +        ++    +   + K   H +R   A++  + G     +    G  ++    
Sbjct: 297 PITKDSIEKHYRGLLKRNPKLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTI 356

Query: 320 ETYTKGADRIRLGIKNSRRISSV 342
           +TY+      ++ +  + ++ S+
Sbjct: 357 DTYSHLYPSKQVAL--ADKLDSL 377


>gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7]
 gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7]
          Length = 413

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/400 (12%), Positives = 103/400 (25%), Gaps = 76/400 (19%)

Query: 1   MTPSLRLPPFVTKERT----RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    R       ++      +G   Y +   +G+R                  ++    
Sbjct: 1   MAKRRRDSKGRVLKKGEQELANGTYRYDYIMKNGKRCFKYAKTLEDLRQKEEDIVSSH-- 58

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKIT 115
              Y   P      L  L   +        L  N+  +++  +D  IR   G +  + I 
Sbjct: 59  --AYGIRPDADSVLLNNLADIWFALK--KGLKDNTFQNYKYMYDSFIRYDFGKYKVKGIR 114

Query: 116 TKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----R 166
              + S      +      ++       +  +   AV+  Y+  NP  +  +        
Sbjct: 115 YSDVLSFYNRLIYERGLKENTIEVIQNILHQVLDLAVQDNYLRTNPSDNALKHFKQASNF 174

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNN--- 220
            TE  R  T+E+   F ++ S   +    +     +L +G+R  +      + +  +   
Sbjct: 175 DTEKKRALTREEQDIFMNYISRNGKYHHWYPIFYIMLNTGMRVGEITGLRWEDVDLDGEF 234

Query: 221 --------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------- 263
                    +  K       I        ++ + +    KE F      Q+         
Sbjct: 235 ISINHTLVYYKHKENGCYFNIHTPKTKAGVRTIPILNGVKEAFIQEEHYQREAEIECTVT 294

Query: 264 ----------------MNATQFSIWFKAKATKAG----------------VNKSAHGVRK 291
                            N    +   +                          S H +R 
Sbjct: 295 IDGYTNFVFVNRFGNVHNQGTLNKAIRRITRDCNEEIIAKSKGKANVTLLPRFSCHSLRH 354

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
             AT   ++G     +    G    +     Y +    ++
Sbjct: 355 TFATRLCESGVNIKVIQDVLGHADFNTTMNVYAEATKDLK 394


>gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
 gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11]
          Length = 327

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 65/257 (25%), Gaps = 13/257 (5%)

Query: 77  EYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           +Y +      +++ N++ +  +    + R+        +           +     +   
Sbjct: 61  DYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDNL-----EFKRSKKATKLPTVFS 115

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
              ++ V+ +     + +A     S  R                +       +G++ R  
Sbjct: 116 HSEAISVINELNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTT 175

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                    L + L              ++   +               G+  +     I
Sbjct: 176 VLPEIIISELKTQLAFVKQQHKVDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQI 235

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K+       +  M              K  ++K  S+H  R   AT   + G     + 
Sbjct: 236 SKDPRSGQRRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQ 295

Query: 309 ATYGWKTVDQAETYTKG 325
              G   +   + YT  
Sbjct: 296 ELLGHSDIKTTQIYTHV 312


>gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A]
 gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A]
          Length = 337

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|325497855|gb|EGC95714.1| phage integrase family site specific recombinase [Escherichia
           fergusonii ECD227]
          Length = 386

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKADKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|229126350|ref|ZP_04255367.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
 gi|228657121|gb|EEL12942.1| DNA integration/recombination/invertion protein [Bacillus cereus
           BDRD-Cer4]
          Length = 347

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 91/308 (29%), Gaps = 41/308 (13%)

Query: 72  KWLISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
              +  +  +         V     + +   +II   G+    K+T+ H+++ V S +  
Sbjct: 45  GEYLESWFNTKKHSVGIQKVKVLKGYLNS--RIIPSLGNIKLAKLTSLHMQNYVNSLRDE 102

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + +  +R   + A+  E +  N    ++  K   E +  W ++++Q F    
Sbjct: 103 GLKRGTIEKIIKLIRNSLENAIDLELITKNVAAKIKLSKADKEELTVWNEQEVQLFLKAA 162

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
              S+  + F   L +G+R  +      + +      +   +T +               
Sbjct: 163 Q-DSRYYIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLVGGKTKSS 221

Query: 233 -ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKA 277
              + LP   +  L                     +          +N         A  
Sbjct: 222 LRKILLPASTVAKLKKHGVVVLKEKLSQGEEYHDNDLVMCTPSGTSINPANVRRSLNALI 281

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335
             A V K   H +    AT+    G     +    G   +    +TY+       +    
Sbjct: 282 QNAAVPKIRFHDLHHTHATLLMAKGVDVKVISERLGHSNIKITLDTYSHVLPT--IQEDA 339

Query: 336 SRRISSVV 343
             +I  ++
Sbjct: 340 VNKIEEIL 347


>gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism]
          Length = 316

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 81/302 (26%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SS 132
           L+   R+       ++ +  ++  +  + +  +G    R +    + + +         +
Sbjct: 17  LLERVRECCRVRHYSLRTERAYVDWIRRFVMANGKRHPRDMGAAEVEAFLSRLATRDDVA 76

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L         + +    SV R KR  +     ++ ++ +  +      Q 
Sbjct: 77  ASTQNQALSALLFLYREVLGIQLPWMESVVRAKRPQKIPAVLSRAEVTRLLALM--DGQV 134

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------------------TGTI 232
            L    L  +G+R  +  R  VQ +  +   I  +                         
Sbjct: 135 ALMASLLYGTGMRLMECVRLRVQDVGFDRNEICVRNGKGGKDRRVPLPRRVRERLLEQVE 194

Query: 233 ITVELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQ-------------- 268
               L    +            LA    G    F                          
Sbjct: 195 RVRILHGQDLATGAGEVFLPHALARKYPGAGREFCWQYVFPSLRESKDPRSGKRRRHHVD 254

Query: 269 ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    KAG++K  S H +R   AT   ++G     +    G K V     YT
Sbjct: 255 EGVLQRAVKIARDKAGIDKPASCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTMIYT 314

Query: 324 KG 325
             
Sbjct: 315 HV 316


>gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T]
 gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T]
          Length = 332

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 73/293 (24%), Gaps = 36/293 (12%)

Query: 66  KKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKIT 115
               +   L+  +           + ++  S+   F  ++R      G       + +I 
Sbjct: 2   SATPSFPALLQRFFTDRLMQQRRASPHTIGSYRDTFRLLLRFAQMRLGRQPSQLAFEQID 61

Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              I +      + R  T  S    LT++R  F++A  +          V     +    
Sbjct: 62  APLIAAFLDELQDKRGITARSRNLRLTAIRSFFRYAAFEAPTHAEQIQRVLAIPSQRFTR 121

Query: 172 RPWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF 222
                    +              G +        + +GLR S+        +   +   
Sbjct: 122 TQVGFLTRPEVDALLAAPDRQTWSGRRDHALLLLAVQAGLRLSELTAMRRDTVILGSGAH 181

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKA 277
            +   K        L      +L                      +++A           
Sbjct: 182 VLVMGKGRKERATPLTRQTAAVLNAWLKEIPANPDATIFPSARGTRLSADGVQYLLAKHV 241

Query: 278 T--------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     A    + H +R  +A     AG     +    G ++V+  + Y
Sbjct: 242 AVAARSCPSLAQKRVTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIY 294


>gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 334

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 87/307 (28%), Gaps = 36/307 (11%)

Query: 77  EYRKSA--HWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESR 126
            Y +       +++ ++  ++ + F        D++ R+  D +   + T  I + ++  
Sbjct: 10  AYLREHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDHV 69

Query: 127 KHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWT 175
           +        +    L ++R  F++   +    ++  L V     K           R   
Sbjct: 70  EIGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVRAIPTKKTDKALIDYLDRAEI 129

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII 233
           K  +         G++ R         GLR S+     +    +          K     
Sbjct: 130 KALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMHIMGKGRRER 189

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKA-------- 280
            + L       L      +    +         Q M    F+         A        
Sbjct: 190 VLPLWKETQIALRAWLAIRPQVEVTEIFLNANGQPMTRDGFAFRLAEHVKTAATKQPSIL 249

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + H +R   A  +  A     ++    G  ++   ETY +     +L I  +    
Sbjct: 250 GKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAHGAP 309

Query: 341 SVVDSDD 347
           ++     
Sbjct: 310 AIKPGRF 316


>gi|262046646|ref|ZP_06019607.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|293380039|ref|ZP_06626138.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|312977817|ref|ZP_07789563.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
 gi|260573095|gb|EEX29654.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|290923446|gb|EFE00350.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|310895124|gb|EFQ44192.1| putative toxin-antitoxin system, toxin component, PIN family
           [Lactobacillus crispatus CTV-05]
          Length = 382

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 47/375 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-------I 61
           + K + + GK+ Y F+   G                 +Y  A    T  +E         
Sbjct: 9   IYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKEEGPSKFTHK 68

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR 120
              ++   T++ +   + +      +  ++  + +S +   I ++ G      I   H++
Sbjct: 69  KEQKENRKTVQEVYEIWLEVYRA-DVRGSTLRTRKSNWKNNIEKEFGGVYIDGIDINHLQ 127

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179
           S       T  +    L  +  + K+A+ +++   +P   +  PK+     +        
Sbjct: 128 SFATKLAETHINYRSILNLLHRVIKYAILRDWCDRDPFDKIVMPKKTKAKSKHPANNFYS 187

Query: 180 -----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
                   +       +  + F  +   G R  ++     +++      I  Q + +   
Sbjct: 188 LSELKTFLECAKKYKEKYYVYFMTVGNLGCRPGEALALKWKNIDFKNKEIFIQHSISTDE 247

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------I 271
                            V L D    +L            N+     +   F        
Sbjct: 248 NGNKIYGPTKTPASVRKVPLSDQLAIVLKEYKEETIYKKGNDFIFHKDNGDFYERSAPDH 307

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQAE-TYTK--G 325
           W         + + + HG R   AT+  +    A   ++    G K       TY+    
Sbjct: 308 WITTLYNNYPLRRITPHGFRHTLATLLNNRKNNANIKDIQYLLGHKKASTTMDTYSHFTK 367

Query: 326 ADRIRLGIKNSRRIS 340
            +   +  ++  ++ 
Sbjct: 368 ENEEHVA-ESINKLD 381


>gi|148556653|ref|YP_001264235.1| phage integrase family protein [Sphingomonas wittichii RW1]
 gi|148501843|gb|ABQ70097.1| phage integrase family protein [Sphingomonas wittichii RW1]
          Length = 422

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 106/361 (29%), Gaps = 38/361 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           L  F+ + R   G      R    R   L            ++A+ G     + +   RK
Sbjct: 41  LKTFIVQYRNAEGIKR---RINIARYGVLTVDQARDQAKLKLAAVIGGEDPADEVRQARK 97

Query: 67  KPTTLKWLISEYRKSAHWGSL--------AVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
              T++ +   Y   A  G++          +S    ES     I    G    + +T  
Sbjct: 98  G-MTVEEMCDWYLTEARAGNILGRKNLPIKKSSLDMDESRIKTHIKPLLGKRIVKHLTIA 156

Query: 118 HIRSGV----ESRKHTPSSAI-------------QFLTSMRVLFKWAVRQEYVAINPCLS 160
            +        + +   P S               + + +++ +   A  +  +  +P   
Sbjct: 157 DVEQMQTDVKDGKTAKPRSGGRGGMATGGAGVAARCVGTLQAIIGHAKHKGLLDAHPTQG 216

Query: 161 VERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            ++   K +  R              +     E          LL +G R  +       
Sbjct: 217 AKKLAGKKKTRRLNVAEIVLMGKAMAYAERNGENPVALGVLRTLLLTGYRREEGQAMHRA 276

Query: 216 HLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +       +    K G  I    P     + +   I        ++  +   T  S   
Sbjct: 277 WVNGAGGYVAFPDTKGGAQIRAIGPAAVKAVESQPVIVGNPHAFPSEVGRGPFTAVSACL 336

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +  A  AG+   + H +R    +++ D G +   + A  G  + +  + Y    + ++L 
Sbjct: 337 QRVAKLAGIEGITPHTLRHTFGSVAGDLGFSELTIRAMLGHASQNVTQDYIHIDEALKLA 396

Query: 333 I 333
           +
Sbjct: 397 V 397


>gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82]
          Length = 337

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + Y   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELYFGEHPIRGTKRLKEEKPNTGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 295

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 85/280 (30%), Gaps = 23/280 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP 130
           + L+ ++ K       + N+   ++S     +R    +  +  IT +   +       T 
Sbjct: 6   EKLVEKFLKFH--SGHSQNTVKYYKSGLKAFMRYFDENKTWENITIEDAINFYNGYNKTG 63

Query: 131 --SSAIQ-----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +  +      L  +   ++WAV  +++  NP  +  +  +  +  R    E      
Sbjct: 64  DGRAVNKNTKIKRLNDVNRFYEWAVEHQFLFKNPIKTFVKTLKFEKKERINLSEKQVATV 123

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
                     +   FLL +G+R S+        +   +    I+  K G    V + +  
Sbjct: 124 LAKVMNYDYYVYTLFLLKTGVRISEFQNILFNDVDLEDRSIYIRDGKGGKDRYVFIDNEL 183

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----------FSIWFKAKAT-KAGVNKSAHGVR 290
           +  L      +E   +  D   +              F  + K     K   + + H  R
Sbjct: 184 LNHLKKYIAYRENLNLKTDCFFVTEQGKKVTNYAIDKFRDYLKEVTKDKIPFDVTPHVFR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
               T++ +       L    G   ++    Y       R
Sbjct: 244 HTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNKESR 283


>gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 393

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              IS +++     SL  +++ +  S    +     D  +  +T + + S     +    
Sbjct: 105 SSFISFFKQEVTNSSLKNSTKRNHLSTLMLLQEFKKDITFSDLTFEFVSSFEYFLQLKGY 164

Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   M+ L +       ++            + K           E++++ +    
Sbjct: 165 HTNTIAKHMKHLKRHVNIAINKEYIEIQKYAFRKYKIKTVENKHTHLVPEELEKLEKLNL 224

Query: 188 EGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            G   +L     AF F  Y+G+R SD      +++ +             +         
Sbjct: 225 SGRYMKLQKSLDAFLFCCYAGMRYSDFTNLSSENIVDINQET--WLIYKSVKTGTEVRLP 282

Query: 243 KLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
             L         + K    +    +  + +  +      A  AG++K  S H  R  +AT
Sbjct: 283 LYLLFAGKGIIILNKYRDNLEGFFRLRDNSNVNKDLLTLAKLAGLSKNISFHTARHTNAT 342

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +    G     +    G K+V   + YT   D
Sbjct: 343 LLIYNGVNITTVQKLLGHKSVKTTQVYTNIMD 374


>gi|324019883|gb|EGB89102.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 386

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLSSKGTKTRHLAILRAILNMAVEWGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68]
          Length = 347

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 95/333 (28%), Gaps = 36/333 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+          + ++        TL
Sbjct: 4   RKLTTGKWLCECYPAGRSGRRVR-KQFATKGEALAFERHTMEEAEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR-- 126
           + ++  + K      L   S  + E  +D++I      G+     +T+K      + R  
Sbjct: 62  QDIVELWFK------LHGKSLTAGEHVYDKLILMVDALGNPLATDLTSKMFAHYRDKRLT 115

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174
                        +P +     + +  +F    R  E+ A NP  ++ +     + +   
Sbjct: 116 GEIYFSEKWKKGASPVTINLEQSYLSGVFSELARLGEWTAPNPLENMRKFTIAEKEMAWL 175

Query: 175 TKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           T E + +        S    L  +  L +G R  ++       +     +    K     
Sbjct: 176 THEQITELLFDCQRQSPLLALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNR 235

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           ++ +     + +      K           +      +  + + T        H +R   
Sbjct: 236 SIPISKELYEEIVALDGFKLFTDCYFQFLAVMDRTSIVLPRGQLT--------HVLRHTF 287

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           A     +G     L    G   +     Y   A
Sbjct: 288 AAHFMMSGGNILALQKILGHHDIKMTMRYAHLA 320


>gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S]
 gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S]
          Length = 341

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 58/332 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSG 122
           L+   +E+         + ++  ++   F  I     +             IT   ++  
Sbjct: 8   LEAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQA 67

Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             S   T   +S  +  ++   L  +    + +  NP  +V RPK      +    + + 
Sbjct: 68  FASFAATHEVASIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAVT 127

Query: 181 QFKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------- 223
           +      E         G +        L +G+R S+     +  +++            
Sbjct: 128 RLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARVI 187

Query: 224 IKTQKTGTIITVELPDGFMKLL-------------------------AMTPIGKETFFIN 258
               K             +  L                                +  F+ 
Sbjct: 188 RVRGKGSKDRVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQHFRSTDPLFVG 247

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYG 312
            D  ++              +AG+N         H  R   AT  AD   +   LM   G
Sbjct: 248 ADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRMLG 307

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            ++++  + YT+GA            +   +D
Sbjct: 308 HESMNTTQVYTEGAGTGVREAAARNPLYRFLD 339


>gi|219871331|ref|YP_002475706.1| phage integrase [Haemophilus parasuis SH0165]
 gi|219691535|gb|ACL32758.1| phage integrase [Haemophilus parasuis SH0165]
          Length = 351

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 93/323 (28%), Gaps = 21/323 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R  +G         +G+RI R            Y   L       + + + R      +
Sbjct: 5   RRKANGPWWVDITTPNGKRIKRSTRTFVKREAQQYHDKLKQEMWAEDKLETKR--KYIFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESR 126
             +  Y +SA    L    + + + + +  + K    +   +T + I       +     
Sbjct: 63  DALLHYVRSAE--ELKD--KATKKRHAEYWLSKFAGRELSSLTAQEIILNIPKKNANTKN 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+  +++ S+  +   A +   +   P +  ++   +      W  +   +     
Sbjct: 119 PLSHSTQNKYVKSLLRVLNIAHKLGMLDSVPYIQKKK---EPPIRVRWITKQQAKQLIDK 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
                 +   +F L +G R ++        +                    ++ L    +
Sbjct: 176 LSSDWMKSICKFALMTGARRTEILTITWDKIDFERKVAIVTNDVAKSGKARSLLLNQEAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           KLL         +                 F     K  + +   H +R   A+    AG
Sbjct: 236 KLLESIRNRHSKYVFVGRNGNPLQDINRKAFNLATKKCLLTDFHFHDLRHTWASWHVQAG 295

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    GW+T++  + Y  
Sbjct: 296 TPLFTLKELGGWETLEMVKKYAH 318


>gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 418

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 88/288 (30%), Gaps = 27/288 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH-- 128
           L+  Y        LA ++R +      + ++   G+   D R++  + + + V  R    
Sbjct: 127 LLDAYLA--ETRGLAASTRRNHRDRIGEFLVNHFGNRSIDMRRVKPRDVLNFVVERSKGL 184

Query: 129 TPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +P SA     S+R   ++         ++   +            R  TKE + QF   +
Sbjct: 185 SPRSAGALAGSLRTYLRYRQSVGDHTESLIAAIPKVAVWSMARIPRLLTKEQISQFLHAF 244

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                 G +       L+  GLR  +     +  +     +++ Q         LP    
Sbjct: 245 DTRTPSGQRGYAMARLLVDLGLRAGEVAALQLSDIDWREGTLRIQAAKCKRVDFLPLPVQ 304

Query: 243 --KLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288
             + LA                        + + +       +    + G   +    H 
Sbjct: 305 TGRALANYVHDGRGRTPSRALFVRHRAPFDRPVTSAVVGCSVRQAYARCGWPATSMGPHL 364

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +R   A+     GA+  ++      ++++    Y+K      + I   
Sbjct: 365 LRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNRLIAIAAV 412


>gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23]
 gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3]
 gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron]
 gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23]
 gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 94/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  SD      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFSDMRNLTDENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|312977849|ref|ZP_07789595.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895156|gb|EFQ44224.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 370

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 96/353 (27%), Gaps = 40/353 (11%)

Query: 16  TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R  K           G+R         T   A            +  N    +      
Sbjct: 6   KRGTKWRAQVSWYDEQGKRCFKVKQGFLTKSAARK--WANEMEVAKDDNQISNQDPIFAE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--S 131
              ++ ++         ++  ++  +  +    G     K+T    +  +          
Sbjct: 64  YFKDWYETYKAPGTTNGTKNRYKQIYKLLTEYFGKTKLSKVTRHQYQEFMNQYGKNHVKG 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEG 189
           +  +   S+    K A+ +  +  N    +          +      + +Q+ K    +G
Sbjct: 124 TVYKTNGSINSSIKDALAEGLIRTNFAERINLTWNNERTRKVDYLNFDQVQKLKESLLDG 183

Query: 190 SQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
            +P    R     ++Y+G+R  +        +  +  +I   K+                
Sbjct: 184 IKPSYISRYMLLTIIYTGMRPGEIRVLTWHDINFDDHTIHISKSWDYDNNKIIDYDSDEI 243

Query: 231 --------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAG 281
                   +   +++    + +L+            +   K   ++  +   + +  K  
Sbjct: 244 NKETKNRSSTRVIKVDQNLLDILSQLKSNNHERLFIDPDGKIPTSSAVNKVLRKQLKKLN 303

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           ++K     H +R     +    G + + +    G   +     TY    D ++
Sbjct: 304 ISKENFHFHSLRHTHVAMLLFKGVSLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3]
          Length = 203

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245
           +  + R     +  +GLR S++ +  ++ +  N    +IK  K        L     KLL
Sbjct: 44  KNLKHRTVISLIYSAGLRISEAVKMEIRDIDFNRKIINIKDAKGKKDRQTALSLKIEKLL 103

Query: 246 AMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
                  +      +    +K +       F     +AG+ K  S H +R   AT   +A
Sbjct: 104 LEYMAFYKPSKYIFEGAGGEKYSERSIQQVFTIAVKEAGIKKEVSVHSLRHSYATHLHEA 163

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
           G     +    G ++    E YT  + +
Sbjct: 164 GTDIKIIQELLGHESTKTTEIYTHVSRK 191


>gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM
           10507]
          Length = 397

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ +YV          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDYVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     F+ +L    +GLR S+ C   +  +  N   +               
Sbjct: 200 LSFIKTDNVYHKYFDDVLILLKTGLRISELCGLTIMDVDFNHEVVIIDHQLLKSKEQGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N   +   A  ++
Sbjct: 260 IETPKTKSGTRQVPLSEETIKAFQRLMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYN 319

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
             F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|326791264|ref|YP_004309085.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326542028|gb|ADZ83887.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 314

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 81/311 (26%), Gaps = 42/311 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129
           ++  I  +  S     L+ ++  ++    +Q    +   +   +  +  +       K  
Sbjct: 3   IEKAIQYFISSLEAEQLSSHTIKAYLQDLNQFKNWTQKKEVDDLNFEDFQDYFIEISKLK 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------------------- 169
            +S  +    M   FK+  R++         ++  + K                      
Sbjct: 63  MTSIKRKRVVMHRFFKFCYRKKLCTEKLHEYIDPIRSKKNVVPKEVLSREEISLIFDFLK 122

Query: 170 --GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226
               +   K +   +   +    + +L    LLY+G R  +      Q +     +I   
Sbjct: 123 KEEKQYKLKVNNTYYDYLYYCSLRNQLLISILLYTGCRAHEVVALKKQDINLLQNTITLF 182

Query: 227 QKTGTIITVELPDGFMKLLAMTPI----------------GKETFFINNDKQKMNATQFS 270
            K G    V + D   K L                             +    M      
Sbjct: 183 TKGGKYNQVPIHDELKKALDNYNESISTLSLGLQNLLQESHYLFPSKTDSNNYMPTRTLH 242

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
              K  +   G +  AH  R   A+    A      + +             YT   D  
Sbjct: 243 DLMKKLSAATGRHIHAHLFRHTFASYCIAANMDISTISSLISHSNPSITLSIYTHEID-A 301

Query: 330 RLGIKNSRRIS 340
               +  +++S
Sbjct: 302 HNKQEQIKKLS 312


>gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 420

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQ---IIRKSGDFD---YRKITTKHIRSGVESRKHTPS----SAIQ 135
             +  +   +++   +    + +  + D   + +++   I++     K        + ++
Sbjct: 137 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 196

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  ++        T  ++Q   +   +  +  L 
Sbjct: 197 YMKCLKKITNMAIAKEWMRKDPFYGYKM-EQDETDPVFLTNNELQAIMNRNFDIPRLELV 255

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGF------- 241
              F F  ++GL  +D      +HL+ +       + G                      
Sbjct: 256 KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLPVP 315

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + +L                  +   + + + K  A   G+ K  + H  R   AT    
Sbjct: 316 LAILKKYESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATTVTL 375

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
                  E+ A  G  +    + Y +  DR
Sbjct: 376 ANNVPLQEVSAMLGHASTRMTQHYARVMDR 405


>gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 340

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 90/313 (28%), Gaps = 41/313 (13%)

Query: 67  KPTTLKWLISEYRKSAHWG--SLAVNSRISFESYFDQIIRKSGD--------FDYRKITT 116
           K T     +++Y              +  S+   F   +    D         D   +T 
Sbjct: 2   KRTDFAAYLNKYFTDYLPNTCGSTPQTIDSYRHSFILFLTYMQDEYQISADRVDISDLTY 61

Query: 117 KHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           ++I S +   K    +  S+  Q   ++    ++ + +    ++    +     K    +
Sbjct: 62  ENIVSYLSWLKEIRSNGVSTRNQRQAALNSFIRFLMYEFPEHLHEYQRILGIPVKKTPQK 121

Query: 173 PWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI- 224
             +    +       Q       G +  +    L  +G+R S+  +  V+ L        
Sbjct: 122 EISYLKTEGVALLISQVDLNRQNGLRDYVILSLLYTTGIRVSELIQIRVKDLSLQEPFTL 181

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFK 274
               K      + L    +  +    + K            F N+  +       +    
Sbjct: 182 LVHGKGQKSRYIPLMRSTIPFIQKYLVQKRYDRPERLDEWLFKNHMSKSFTRQGINYIVG 241

Query: 275 AKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                A          + S H +R  +A    ++G     +    G +++   E Y +  
Sbjct: 242 KYTKMAREIAPDMIPADFSPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARAD 301

Query: 326 ADRIRLGIKNSRR 338
           A   R  I+ + +
Sbjct: 302 AMHKRQAIEAASK 314


>gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 416

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 94/335 (28%), Gaps = 54/335 (16%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                   + A  +      P    +    K        ++E+ +     S+   + IS+
Sbjct: 66  GRGGTYEKVDAKTA-----KPLPLPLQPVNKSEMLFLDYLNEWVQVHKA-SIQPATFISY 119

Query: 96  ESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAV 148
                    Q     G     ++T + +    E       +      +       FK AV
Sbjct: 120 NRMITGRITQYFEPLG-LKLCEVTPQVLDEFQEKILLEGYTTNTVIHYHAIFGKAFKDAV 178

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           R++Y+  NP L V+RPK+ +     ++K+++QQ      +     L      Y GLR S+
Sbjct: 179 RKDYLETNPMLKVDRPKKNSFRPNFYSKDEVQQLLEVSQDDP-LHLCILITAYYGLRRSE 237

Query: 209 SCRAGVQHLQNNIFS---------------------IKTQKTGTIITVELPDGFMKLLAM 247
                   +     S                        +   +  T+ L     + L  
Sbjct: 238 VLGLKWSSIDFERKSITINHKVTEQLVNGKYVPVVSDVMKNKTSCRTLPLIPAVEEELLK 297

Query: 248 TPIGKETFFINNDKQKMN----------------ATQFSIWFKAKATKAGVNK-SAHGVR 290
               ++ +     K                        +  F    TK G+     H +R
Sbjct: 298 QKEKQQLYRKLFKKSYSTEYLDFVCTDQEGKLIRPNFVTEHFDWLLTKYGLKHIRFHDLR 357

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
              A++    G +  ++    G  T       Y  
Sbjct: 358 HSCASLMVMNGVSMKQVQEWLGHSTFSTTADIYAH 392


>gi|307822023|ref|ZP_07652255.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307736589|gb|EFO07434.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 381

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 93/278 (33%), Gaps = 24/278 (8%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            TL+  +  Y+          +++  +            D   R IT+  + S  + R  
Sbjct: 10  ITLRDALIMYQDRVSIYK-KGHTQEKYRIAL-YCRYPIADLPVRSITSVDVASFRDQRLS 67

Query: 127 KHTPSSAIQF--------LTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKE 177
           +  P +  +         L  +  +F+    +  +   NP  ++ +PK      R  T  
Sbjct: 68  EINPRTGNRLASATVRLDLALLSDMFRIGKIEWGICDDNPVANIRKPKLSPGRDRRLTAR 127

Query: 178 DMQQFKSFWSE-GSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233
           + +    + ++ G++  LA     L + +R  +      +H+     I  +   K+G+  
Sbjct: 128 EERMILRYCNKQGTKAMLAIFQLALETAMRQGEILSLRWEHINLKARIAHLSDTKSGSKR 187

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292
            V L      +L    +       +       +      +++      + +   H +R  
Sbjct: 188 DVPLTMAARDILTGQGVKSSGRVFSY-----TSNGLKSSWRSMIRNLLINDLHFHDLRHE 242

Query: 293 SATISADAGA-TAHELMATYGWKTVDQAETYTKGADRI 329
           + +   + G     E+ A  G K++   + YT    + 
Sbjct: 243 AISRLVERGVFDLMEVAAISGHKSLAMLKRYTHLRTQR 280


>gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++IT   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  + GL  SD      +++Q +        T         D  + LL +  +  + + 
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIIT--KRVKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|284989998|ref|YP_003408552.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063243|gb|ADB74181.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 371

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 118/365 (32%), Gaps = 45/365 (12%)

Query: 18  HGKIIYY-----------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           HG++  Y           +R   G   ++    ++        A+      R        
Sbjct: 11  HGRVRVYPDPAGYRAVCLYRDWDGATRQVQRQAKTKGAAERALAVALRDRGRPGTGHEIT 70

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
             T +  L +++         + ++  ++    D+ ++   G    R+++   +   + +
Sbjct: 71  PDTKVADLAAKWFSELE--GKSPSTMQAYRDRLDRQVLPALGSVRVRELSVGLLDRHLAA 128

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF 182
            +  H P+ A    + +  +   A R + +  NPC  V   P +     R  T ++++  
Sbjct: 129 VRASHGPALAKMTKSVISGMCGLACRHDALKANPCRDVARIPSQTRRAPRALTADEVRSV 188

Query: 183 KSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
           +++ SE +  R      L      +GLR  ++C      +  +  ++             
Sbjct: 189 RAWLSEDATARERDMPDLVAFMVATGLRIGEACAVSWPDVDLDADTVTVTGTVLRVKGQG 248

Query: 226 -----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATK 279
                 +       +ELP   + LL          F     +K  +        +     
Sbjct: 249 LVVSQPKSMAGERVLELPSWCVALLRRRGPSSGPVFPAPRSRKLRDPNNTRRALREAFHA 308

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
            G+   ++H  RK  AT+  +AG +A       G       +  Y     R R     ++
Sbjct: 309 MGMPGVTSHAFRKTVATLMDEAGLSARSAADQLGHAKPSVTQDVYY---GRRRRATGAAQ 365

Query: 338 RISSV 342
            +  +
Sbjct: 366 VLEQL 370


>gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114]
 gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114]
          Length = 327

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 65/257 (25%), Gaps = 13/257 (5%)

Query: 77  EYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
            Y +      +++ N++ +  +    + R+        +           +     +   
Sbjct: 61  AYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDNL-----EFKRSKKATKLPTVFT 115

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++ V+ +     + +A     S  R                +       +G++ R  
Sbjct: 116 HGEAISVINELNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTT 175

Query: 196 FEFL-----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                    L + L              ++   +               G+  +     I
Sbjct: 176 VLPESIIPELKTQLEFVKQQHKMDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQI 235

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K+     + +  M              K  ++K  S+H  R   AT   + G     + 
Sbjct: 236 SKDPRSGQHRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQ 295

Query: 309 ATYGWKTVDQAETYTKG 325
              G   +   + YT  
Sbjct: 296 ELLGHSDIKTTQIYTHV 312


>gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 369

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 102/332 (30%), Gaps = 43/332 (12%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE- 96
            +         +A        +      +   TL   +  +  + H    +  +   ++ 
Sbjct: 2   KYSKRRKQEDNAA--SLQQDIQEAKEVSRATLTLDDALRIFLSAQHASGNSGATHKDYQI 59

Query: 97  ----SYFDQIIRKSGDFDYRKITTKHIRSGVESRK---------HTPSSAIQFLTSMRVL 143
                +   +          +I    I   +   +         ++  S   +   + V 
Sbjct: 60  AVGNVFIRYMKETLNRVYLEEIEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVF 119

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------------- 189
           FKW V  +++  NP  +++  K +   IR +T++++ +  +                   
Sbjct: 120 FKWLVAHKHLKENPAENLKPVKTEKALIRVFTEDELVRLDAACDRAPKGKSLTPDERKAL 179

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247
            S+ R     LL +G+R S++C      ++ ++       K      +       + L  
Sbjct: 180 SSRDRAFLWLLLSTGIRVSEACGLLFGDIEWDMGMIYVRGKGAKERKIPFGKIARQHLDT 239

Query: 248 TPIGKETFFINN--------DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296
                     N+            +  +     F      AG++    S H  R + A  
Sbjct: 240 YIRYWRGGTTNHDEYVFLNAWGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVN 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +   G  +  L    G +T++   TY + A++
Sbjct: 300 AIKNGVPSTVLQGWLGHETLEMINTYVRLAEQ 331


>gi|229192879|ref|ZP_04319837.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
 gi|228590718|gb|EEK48579.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC
           10876]
          Length = 392

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 113/380 (29%), Gaps = 44/380 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALT-GSTPKR 58
             +  P +       G  ++ FR  +    G+R         +   AY   L   ++   
Sbjct: 6   KTKKDPELYYYFNTKGVKLWCFRHRYYDSLGKRREKYKQGYKSENEAYRGLLEVKTSILN 65

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI--- 114
             +   +    T+   +  + ++       ++SR   E+     +    G +   ++   
Sbjct: 66  GEVKQVKNSNLTISEWLDIWYETHK-NEWKISSRSQRENAIKYQMKPLLGKYKLAELDKS 124

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T K +      +K+ PS+   F    ++    AV  E +  N    +  P  +      +
Sbjct: 125 TYKRVYINELLKKYKPSTVQLFHRLFKISINSAVDDELIPRNRFKKITIPNEEKTAENFF 184

Query: 175 TKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKT 229
           T E++ +F +     E          L ++GLR  ++      ++     +    +T+  
Sbjct: 185 TAEELNEFIAAAKKHENITNYSIILLLAFTGLRKGEALGLQWNNINFEAKTLTVERTRDN 244

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------------KMN 265
               T +  + F  +L    +  +        +                         + 
Sbjct: 245 KGTRTPKTKNSFRTILIDDTLINQLKVYRTWCKKTKLSFGLHLHDDDFIFISYQSGTPIT 304

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                  F+       + K + HG+R   AT+          +    G  T     + Y 
Sbjct: 305 DNPLMYSFQRILKHTTLKKITPHGLRHTHATLLISQRIPVKVIADRLG-NTPQMIFDIYG 363

Query: 324 KGADRIRLGIKNSRRISSVV 343
                  L  ++    S+ +
Sbjct: 364 HSF--KELEEESVAAFSTSL 381


>gi|223932876|ref|ZP_03624872.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898457|gb|EEF64822.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 390

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 107/388 (27%), Gaps = 56/388 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G  +Y            G++++          +         +         
Sbjct: 5   ITEVKKKNGATVYRASVYLGIDAITGKKVKTNVTGRTKKEVKNKTQQAIATFKTDGATRY 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                T+ K L   +  S    ++  N+R +        +I   G +   K+TT  ++S 
Sbjct: 65  QSATITSYKELAELWWNSYK-HTVKPNTRGNIRGLLKNHVIPLFGAYKLDKLTTSLLQSI 123

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           V       ++          +     + + ++ V  + +  NP   V  P+   +  R  
Sbjct: 124 VIKLADKANTGEAGAYLHYDKIHALNKRILQYGVVMQVLPYNPAREVILPRNAKKATRKK 183

Query: 175 TKEDMQQFKSFWSEGS------QPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFS 223
            K    +    + +        + R  +E  LY     +G R ++        +  N  +
Sbjct: 184 VKHFNDEQLKQFLDYLDNLDPAKYRNIYEVTLYKFLLATGCRINEVLALHWSDIDLNNAT 243

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------------- 267
           +   KT               +    I  +T  +  + ++                    
Sbjct: 244 VSITKTLNRYGSINSPKSNASIRDIDIDSQTVTMMKEYRRRQIQEAWTLGRSETVVFSDF 303

Query: 268 --------QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                           +    G+     HG R   A++  ++G    EL    G   +  
Sbjct: 304 IHDYPEDKTLGNRLTTRLRNIGLPNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSRISM 363

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVDS 345
               Y+  +                + +
Sbjct: 364 TMDIYSHLS--KENAKNAVAFYEKALGN 389


>gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
 gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM
           17393]
          Length = 412

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 76/257 (29%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           D   ++IT   I       + T              
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       T+++++          +    R  F 
Sbjct: 191 FKRIILIARNNGILIGDPFANYKMRLEKVDRGYLTEDEIKIILKKKMVSERLEQVRDVFI 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  +SGL   D       +++ +        T    T    +  +  +    + K    +
Sbjct: 251 FSCFSGLAYVDVANLREDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKGKL 310

Query: 258 NNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            N K    ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 311 PNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLG 370

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 371 HTNIETTQIYARITNNK 387


>gi|149914829|ref|ZP_01903359.1| Integrase [Roseobacter sp. AzwK-3b]
 gi|149811622|gb|EDM71457.1| Integrase [Roseobacter sp. AzwK-3b]
          Length = 308

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 24/296 (8%)

Query: 67  KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
              T+  LI  +  S       ++  ++  +  Y     +  GD   R++  +H+ + + 
Sbjct: 12  PTDTIGALIDAFEVSWATRQRKISKGTQEHYRRYLKPARKAWGDLPARELRPRHVDALIR 71

Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P +A   L +++ +  WA     +  +          K EG RPWT + +   +
Sbjct: 72  KIGADKPGAANNILDALKAMVSWANGPVELLTHDPTQGVERFSKGEGHRPWTSQQLAFAE 131

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPD 239
             ++     R  F    Y+G R SD  R     + +            K    I  EL  
Sbjct: 132 QVFT--GTIRRFFFLSRYTGQRISDVVRLSPNDVDDGGFSLPQKKTGVKPWCPIFPELEA 189

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             +                +  +  +  Q    F  +  K  V      HG+R  +    
Sbjct: 190 EMVTWERRPGPYLLQSSGKSAGKPFSTNQMWKAFDRERKKYSVLSGAVPHGLRANAVIRL 249

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI------------RLGIKNSRRISS 341
              G TA ++    G  +V+  E+Y++ ADR             R   +  +R+ S
Sbjct: 250 RGEGYTALQISDMVG-MSVEMVESYSRHADRKASGQAVLREFQERDASQIVKRLES 304


>gi|298207372|ref|YP_003715551.1| integrase [Croceibacter atlanticus HTCC2559]
 gi|83850008|gb|EAP87876.1| integrase [Croceibacter atlanticus HTCC2559]
          Length = 406

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 30/318 (9%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
           R+ Y             +      +E+    R    ++ +   +Y +S       + + +
Sbjct: 66  RIEYFESKADDVIKALKVFSFDAFKEHYLDERNTTDSVSFAFDKYIESLKVEK-RIGTAV 124

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           S+E   + I   + +  +  IT   ++         +++ S+   +L S+R ++      
Sbjct: 125 SYECAKNSISSFNKNLTFADITPNFLKKYENWMLENRNSISTVGIYLRSLRAVYNKQKID 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRC 206
           +            P  +         E  + F       S   +A ++ ++     G+  
Sbjct: 185 KTAYPFGKEKYTIPTSENTKKALTIDEVGKIFHFEIEPNSTKEMARDYWIFLYLCNGMNV 244

Query: 207 SDSCRAGVQHLQNNIFSI------KTQKTGTIITVELPDGFMKLLAMT----------PI 250
            D C     ++ +NI         ++QK    ITV L    ++++               
Sbjct: 245 KDFCLLKWSNISDNIIRYSRAKTKRSQKKQKEITVALKPQSLEIIRKWGQPSINKDAFIF 304

Query: 251 GKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNK--SAHGVRKFSATISADAGATA 304
                 +N  +++    Q +          A   G+NK  + +  R   ATI   +GA  
Sbjct: 305 PHLNDKMNEVQKRATHQQLTKIINKYVNQVAKDVGINKKVTTYFARHSFATILKRSGANI 364

Query: 305 HELMATYGWKTVDQAETY 322
             +    G   V   E+Y
Sbjct: 365 SMISDLLGHSDVSVTESY 382


>gi|126461447|ref|YP_001042561.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103111|gb|ABN75789.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 363

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 130/344 (37%), Gaps = 24/344 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALTGSTPKREYIN-SP 64
           P +  E+   G   Y  R    + +       P    F+  Y +   G           P
Sbjct: 6   PGLWAEKMPSGATRYRVRAEGRKTVITLIPVGPDHPDFLSHYSAGRQGEKWAGPATAPQP 65

Query: 65  RKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRK 113
           +    +++WL+  Y             ++ +     S   +            G++D+R 
Sbjct: 66  KAVTHSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGTYGEYDFRA 125

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIR 172
                I +  +  +H P  A   + S+  +++WA+ +  +   NP   +++  +   G  
Sbjct: 126 -PRSAIIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAAGIKKLNKGGGGAA 184

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQ 227
            WT +D+++F+     G+   L     +++  R  D+ + G  +  +      +     +
Sbjct: 185 AWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLWLEFQPGK 244

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KS 285
           K    +++ +    +K      +   T+ +    +    A       +     AG+  KS
Sbjct: 245 KGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGKS 304

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +HG+RK +A + A+AG T H++MA         +E YTKGA R 
Sbjct: 305 SHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQRR 348


>gi|186681346|ref|YP_001864542.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686687|ref|YP_001869881.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186686754|ref|YP_001869947.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186687046|ref|YP_001870435.1| site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
 gi|186687121|ref|YP_001870264.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463798|gb|ACC79599.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469106|gb|ACC84906.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469424|gb|ACC85223.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469572|gb|ACC85370.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469670|gb|ACC85467.1| Site-specific recombinase XerD-like protein [Nostoc punctiforme PCC
           73102]
          Length = 304

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 99/304 (32%), Gaps = 29/304 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   TL  + +E+ +      LA ++R ++E     +++K G +    I+ + +   + +
Sbjct: 2   KSAVTLATVTTEFLERP---GLAPSTRETYELTLGLLLQKYGSWSIEIISKQTLVEYLNN 58

Query: 126 RKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEG--------IRPWTK 176
             H   +      + ++ L  +AV Q Y+  NP   +++   + E         IR  T+
Sbjct: 59  LSHLKYTTHHKHQAILQSLLNFAVEQGYIKSNPIRGLKQRLPEREKGEHKSDETIRYLTQ 118

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITV 235
             +    S   +  +       L  +G R  +     +  +           K       
Sbjct: 119 SQLNILYSAVKDDLRLSTIVHLLHRTGCRIGELLALNIDSVDIKNQKFQVLGKGNKQRWC 178

Query: 236 ELPDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAG--VN 283
              D    +LA                    +     +++      +++    K      
Sbjct: 179 FYSDDAASMLAKYLKYSRHQNTNALFTAQHPVTRKVSRISYHTLHDYWRETTNKYPHLQG 238

Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              H +R   AT     G  +  EL +  G +++     Y K   +          ++ +
Sbjct: 239 VRIHDLRHTFATE--RVGLISIEELCSLMGHESIQTTLRYAKVTSQKSESA-ARHALNIL 295

Query: 343 VDSD 346
           ++SD
Sbjct: 296 INSD 299


>gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
 gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294]
          Length = 338

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 88/307 (28%), Gaps = 57/307 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
           K L+   R+   +   ++++  ++  +    I          +  K I   +      ++
Sbjct: 5   KKLLDIVREKIRFMHYSISTEKTYIHWIKHYILFHNKKHPIDMAKKEIEEFLTFLAVKKQ 64

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P++  Q  +++  LF +        +   +   R + +       TKE++Q+     +
Sbjct: 65  VSPTTQNQAFSAI--LFLYKEVLGLDTVEWNIQALRAQERKHIPVVLTKEEVQKVLQ--N 120

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------------- 227
                +L    +   GLR S+     ++ +      +                       
Sbjct: 121 LTGIYKLVTTLMYGCGLRMSEVLNIRIKDIDFGFNKLYIWDSKSLKDKTIPLPLKLKEEL 180

Query: 228 ---------------------------KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                                              +    +  L  M  I K+       
Sbjct: 181 LVQVQRVQDIHVKDLEDGYGSVYLPFAYEKKYPNAKYETKWQFLFPMRNISKDPRSNLKR 240

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++        K  + KA +NK  ++H  R   AT     G     +    G K+V+ 
Sbjct: 241 RHHIHPQTLGRNIKIASKKANLNKRVTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVET 300

Query: 319 AETYTKG 325
              YT  
Sbjct: 301 TMIYTHH 307


>gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
 gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 182-1]
          Length = 337

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + Y   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELYFGEHPIRGTKRLKEEKPDTGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|289649043|ref|ZP_06480386.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 418

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 114/370 (30%), Gaps = 43/370 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +    +  G + + +    +GRR  L      P   +   A    +             
Sbjct: 24  GMYVTVSPSGTVTFRYDYRLNGRRETLTIGRYGPAGISLALAREKLIDAKKSVAQGKSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++          T   +  ++   A    +A +++   +S  D+ I+    +    +I
Sbjct: 84  LEKQREKRRLTAAKTFGEMTGKWLAGAR---MADSTKAMRKSIVDRDILPAFENRQLNEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T+  +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TSDDLRALCNKVKERGAPATAVHIRDIVKQVYAFAILHGEKVENPAADVGAASIATFVPK 200

Query: 173 -----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
                P     M +     +     RLA   +L + +R S+  +A    +          
Sbjct: 201 DRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFENATWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           ++        +     + L +                  +  +         + +     
Sbjct: 261 KQRMKGRNPHVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRVTQIVAE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRI 329
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A++ 
Sbjct: 321 RAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEDGRSSRSIYNKAEYAEQR 380

Query: 330 RLGIKNSRRI 339
           R  ++    +
Sbjct: 381 RHMLQEWANM 390


>gi|229111172|ref|ZP_04240729.1| Phage integrase [Bacillus cereus Rock1-15]
 gi|228672336|gb|EEL27623.1| Phage integrase [Bacillus cereus Rock1-15]
          Length = 381

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 104/351 (29%), Gaps = 45/351 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
              F+  + ++ +               A      K          PT+LK  + ++ K 
Sbjct: 14  RVRFKDPYTQKYKEKSKRGFKTKKEAQLAAAEEEKKLLNGLEVEITPTSLKHYLRDWLKL 73

Query: 82  AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
               ++  N+ I  E      II    + + +++     +  + S      S  + +  +
Sbjct: 74  FKQDNVRKNTFILHERNIEKHIIPYFQNMNLKELKPMMYQKFINSLIDQGYS-KRTVQII 132

Query: 141 RVLFKWAVR--------QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 A++        +        +S +  K +       +++     K+ +      
Sbjct: 133 HGTMNNAMKKAVSLKKIENNPCEEVVISNKNNKEREGLKYMRSEDIPLFLKTSYQYNYIY 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------------QKTGTIIT 234
            + F+ LL +G+R  ++     + +     +I                    +   +  T
Sbjct: 193 YIFFKTLLNTGMRKGEAAALQWKDINLKEHTITISKTLDFTAKTKEELFGDTKTFTSKRT 252

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN---------------ATQFSIWFKAKATK 279
           + +P   +  L      +    +                        +     F     K
Sbjct: 253 IMIPKSLVDELLAHKKWQNANKLVLQDAYEYELDLVFSRVDGKFLPKSTLFNAFSRILKK 312

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           A + +   H +R   A +  ++GA+   +    G K+++     Y+  +D+
Sbjct: 313 ANLPRLEIHSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363


>gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25]
 gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25]
          Length = 320

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 80/301 (26%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  S+  +  + I          +    +   +         A++   
Sbjct: 10  KEHMLTRHYANKTIESYLFWIKRFITFHQLAHPSTLAEDDVVQFLSYLAVKEKVAVKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +           ++  +  ++   + +     T+E+++  +       + +L  +
Sbjct: 70  LALNSISFLYRDYFKTPLSLDMRFQKSLTEKKLPVVLTREEIR--RFVQHIDPRYKLHIQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  VQ +  +  +++                                
Sbjct: 128 LLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKAQVNLARDY 187

Query: 229 TGTIITVELP-----------DGFMKLLAMTPIGKETFFI--------NNDKQKMNATQF 269
                 +                    L                       +  +N +  
Sbjct: 188 YFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGELRRHHINESAI 247

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K  AT A + K+   H +R   AT   ++GA    +    G   V   + YT   +
Sbjct: 248 QRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHVIE 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia]
          Length = 319

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 84/299 (28%), Gaps = 55/299 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQF 136
           ++       +  +  S+  +  + I         K++ +H+   +         A   Q 
Sbjct: 10  KEHMLMRHYSNKTIESYLFWIKRYIVFHQFAHPSKLSEEHVVQFLSHIAVKDKVAVKTQA 69

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L    + F +    +          +    K       T++++++F        + +L  
Sbjct: 70  LALCSIAFLYRDFFQTPLSLEMRFQKSLTEKK-LPVVLTRDEIRRFIQH--IDPKYKLQT 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKET 254
             L  SG+R  +  R  +Q +  +  +I+  +       TV L       L        +
Sbjct: 127 LLLYGSGVRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKELHSSLKAQVDLARS 186

Query: 255 FFINNDKQK----------------------------------------------MNATQ 268
           ++  +                                                  +N + 
Sbjct: 187 YYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPEMGELRRHHINESA 246

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                K  A  AG+ K  + H +R   AT   ++GA    +    G   V   + YT  
Sbjct: 247 LQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305


>gi|257125977|ref|YP_003164091.1| integrase family protein [Leptotrichia buccalis C-1013-b]
 gi|257049916|gb|ACV39100.1| integrase family protein [Leptotrichia buccalis C-1013-b]
          Length = 367

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 103/336 (30%), Gaps = 47/336 (13%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110
                        +    +   L   Y +          +  + E++F   I+    + +
Sbjct: 39  AQEYEYEFKKKISKSVNMSFNSLYELYFEDYK-KRHKPTAINTVETFFRLHILPFFDNIE 97

Query: 111 YRKITTKHIRSGVESRK---------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             KI +  IR                 + +S      +++ +F WA + + +  NPC ++
Sbjct: 98  ISKINSYMIREWQNEMLEKKNENGKLFSENSKANIYAALKSMFNWAAKYQGLNENPCKNL 157

Query: 162 ERPKRKTEG--IRPWTKEDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCR 211
                K     ++ W+ +D  +F +           + +   + F+ L ++GLR  +   
Sbjct: 158 GAFGSKKNRSEMKIWSVDDFNKFINLLEIKNKEKNGKYTDAIIIFKILFWTGLRIGEVLA 217

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------------------AMTPIGKE 253
                +      I   KT + I  +      K L                    +   K+
Sbjct: 218 LTFDDINLKEKFIDVNKTISHINKKDYITTPKTLGSVRKVILPENLILDLKLYFSKFEKQ 277

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
               +     +  +Q     +  + +A V K   H  R   A+      A    +    G
Sbjct: 278 KISKSERIFNLKKSQLRYILEKCSIQAEVEKIRLHDFRHSHASYLLFIQADITAISKRLG 337

Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
              +     TY+       L    ++++   +++++
Sbjct: 338 HDNLQTTINTYSH------LYKDANKQLMKKLNTNN 367


>gi|85059199|ref|YP_454901.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779719|dbj|BAE74496.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 340

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 105/337 (31%), Gaps = 37/337 (10%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYIN 62
            +L   V +     GK   YF+    + I L     S       Y   L+  T       
Sbjct: 11  NKLSKNVYR-----GKYKTYFKPSQNQTIALGPKDMSISETWRQYEVELSELTKV----- 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
                  T   L   +  SA++  L   ++  +  +  ++I   G+     I  +H+R+ 
Sbjct: 61  ------ITFSRLWHSFLGSAYFSELKPRTQKDYLQHQKKLIAVFGEVKADNIKPEHVRTF 114

Query: 123 VESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++ R   + + A   + SM  ++KW   + YV  NPC       +     R     D + 
Sbjct: 115 MDKRGLQSKTQANHEMASMSHVYKWGYERGYVKGNPCAG---VMKFKAVKRDRYITDEEY 171

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              + +     + A E       R SD      Q +      I+  KTG           
Sbjct: 172 TAIYNAADDVVKAAMEIAYLCAARLSDVLGMKWQQITEQGIFIQQVKTGIKQIKAWTPRL 231

Query: 242 MKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGV 289
            + + +               +   K       FS  +    +KA       ++ + H +
Sbjct: 232 REAIEIAKSSSAPAQADTPVIMGQHKGHYTKRGFSNRWTEARSKASAQLGYELDCTFHDL 291

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               A   +D   +  +     G K+  Q   Y +  
Sbjct: 292 ---KAKGISDYKGSTKDKQLFSGHKSESQVLVYDRKV 325


>gi|330814118|ref|YP_004358357.1| integrase/recombinase xerD-like protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487213|gb|AEA81618.1| integrase/recombinase xerD-like protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 306

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 33/285 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
           S ++N+  ++ S F        D +       I    +     S+ +  S+  + L S+ 
Sbjct: 22  SKSLNTLRAYRSDFSDFKNFCSDLNLPYLPTHIKAVSLYMTHLSKSNKYSTLKRRLASIN 81

Query: 142 VL-----FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQFKSFWSE 188
           V+     F    +   +  N      +      G +P    +               +  
Sbjct: 82  VIHSLKGFHIDTKNPLIKDNLEGIKRKIGIYQNGKKPLLINNLHKIIDVIDYYKIQKYVR 141

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----------SIKTQKTGTIITVEL 237
            ++ +         G R S+        L+                   +     I    
Sbjct: 142 STRDKAIILIGFSGGFRRSEIVNLKKNDLEFVEEGLKISLRRSKGDQYGEGMIKAIPYFN 201

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSA 294
              +  ++A+          N+     +    S+  K      G++      H +R   A
Sbjct: 202 NKKYCAIIALQDWLSARTNNNDLIFPYSDKTVSLILKKYLNIIGLDSRLYSGHSLRSGFA 261

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           T +A  GA    +MA  G K+ +    Y K ++  +       ++
Sbjct: 262 TSTASHGADERSIMAMTGHKSTEMVRRYIKDSNLFK--NNALNKL 304


>gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella
           denticola CRIS 18C-A]
          Length = 341

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 84/288 (29%), Gaps = 40/288 (13%)

Query: 90  NSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGVES----RKHTPSSAIQFL 137
           N+  ++   F  ++                + IT + I S +      RK + ++    L
Sbjct: 27  NTIKTYSYCFTLLLEYFKEVELIRAQKLTLKHITKERIISFLNWLETTRKCSTNTRNARL 86

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGS 190
            ++   FK+   ++   I     V   K K  G++      ++  K           +G 
Sbjct: 87  GAIHAFFKYLQYRDVTGIAMWQDVLSIKFKKTGVKQMPFLSVEAIKALLDLPNQKTKKGR 146

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           +  +    L  S +R  +   +    ++    +      K   + T+ L D     L   
Sbjct: 147 RDFVLIGLLYDSAMRVQELIDSTPSDIRFGEIVTIRVIGKGNKVRTIPLTDVQANNLKQY 206

Query: 249 PIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVNKSA--------HGVRK 291
            +       N     +         +        K        N S         H +R 
Sbjct: 207 MLENNMLDKNKLNNPLFSNGRDGKLSRMAVLKIVKKYFQILKQNTSIIVPDDIGCHALRH 266

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             A    +A      +    G  +V   E Y + +D  ++  +   ++
Sbjct: 267 SKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASD--KMKKEALAKL 312


>gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1]
 gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1]
          Length = 347

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 16/215 (7%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S     L+++R         ++  +   + +  P++  +     +K+++Q+       
Sbjct: 10  SASEVSVTLSALRTGL-----DKFCLLRCTVGLVSPRKSKQLPVVMSKKEVQRMMEAA-R 63

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA 246
             + +L    L  +GLR ++  R        +   I+ Q  K      V L D  + L+ 
Sbjct: 64  TLRDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMR 123

Query: 247 MTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                                + ++        K     +G+ K  + H  R   AT   
Sbjct: 124 QLWRHTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLI 183

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           ++G     +    G   ++    YTK A      +
Sbjct: 184 ESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV 218


>gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211]
 gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211]
          Length = 291

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 86/265 (32%), Gaps = 17/265 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
                + +     +  L+  +   +   +++  + SG+     +    ++  + S +  H
Sbjct: 3   WNQHFNLFIGDREYQGLSPETLRYYRQCWERFKQYSGEEP--TVDRMTLQQYLISLQATH 60

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           TPSS       +++  KW   +EY +      ++ P+   +  +P ++ ++ +  +    
Sbjct: 61  TPSSIATRWRGLKIFLKWCYVEEY-SEFDPSRLKNPRAPFKKKQPLSEIEVLKLLNAC-R 118

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
             + +     L  +G+R  + C   V  +      +  +         +P     L  + 
Sbjct: 119 NFRDKAIVALLFDTGIRSKELCNLTVGDVDLVNRCVYVRNGKGGRDRIVPFSPSALRDLR 178

Query: 249 PIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
              ++    +     +         N         +   +AG+      H +R   A   
Sbjct: 179 KWAQQRNVESPWFFHVVKGEVGGALNRRWLHGLLMSAGKRAGLGEIVGPHKLRHSYARSY 238

Query: 298 ADAGATAHELMATYGWKTVDQAETY 322
             +      L  T G  ++   + Y
Sbjct: 239 IASNGNPMALQETLGHSSIIVTQRY 263


>gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162]
          Length = 382

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 103/370 (27%), Gaps = 60/370 (16%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           R+P  + K+     +  +     +G+R                                 
Sbjct: 3   RIPSGMRKKENGLFEKRFTV---NGKRYSAYGHTVKECTDNETEIREAIKAGL----YSS 55

Query: 66  KKPTTLKWLISEYRKSAH--WGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            K  TL     E+ KS      + ++N +R  ++   + I    G    +KI  + +   
Sbjct: 56  NKNITLDAYFDEWEKSRIGVVKNSSINETRSKYD---NHIKPALGKTKIQKIEKRAVLKL 112

Query: 123 VESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER------PKRKTEGIRPW 174
                     S+    L  ++ +   AVR E +  NP   V+       PK      R  
Sbjct: 113 QRELSQKLCASTTNSVLIILKSVLNEAVRDEIIIKNPAAGVKPLRTDDRPKATETIHRAL 172

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
           T+E+ Q F     +       F F L +G+R ++        +      I   KT +   
Sbjct: 173 TREEQQIFMKEAQKE-WLYEFFCFSLCTGMRINEINALKWSDIDYINNMIHVTKTISRKK 231

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------------ 265
                            + + D   K+L M        + +   +K++            
Sbjct: 232 GGGIEETSPKSQTSKRDIPMNDTIKKILQMQKDKITLVYGDIFVKKISNPIFIGSRGATA 291

Query: 266 --ATQFSIWFKAKATKA---GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +            +    G+     + H  R   AT   + G     L    G  ++ 
Sbjct: 292 VSSHSVGYSIDNVLKRLRQQGIEIERFTHHAFRDTFATRYIEEGGNMQTLKKILGHSSLA 351

Query: 318 QAE-TYTKGA 326
                Y    
Sbjct: 352 MTADLYAHVL 361


>gi|163851883|ref|YP_001639926.1| integrase family protein [Methylobacterium extorquens PA1]
 gi|163663488|gb|ABY30855.1| integrase family protein [Methylobacterium extorquens PA1]
          Length = 415

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 95/355 (26%), Gaps = 33/355 (9%)

Query: 14  ERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTG----------STPKRE 59
            R R  +  +  R   G      I L          A   A              + +R 
Sbjct: 48  YRLRGERATWVVRPPRGGGRSSLITLGAAGLIDATDARRLAREHLLKAALGEDTRSARRV 107

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                 K   T+K     Y  +A    L  ++  +  ++  Q  R         +    +
Sbjct: 108 ERAERTKAALTVKEAFDLYTAAAEER-LRPSTLANLRTHLSQHWRGLHALPLASVRRADV 166

Query: 120 RSGVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +            P +A++   ++  ++ WA+ ++    NP      P  +    R 
Sbjct: 167 AEQLRKIARPAPDGSGPQAALRARRTLSTVYVWAIGEDLAETNPVTGTNPPAVEVRRERV 226

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKT 229
            T +++                   L  +G R  +        +       +      K 
Sbjct: 227 LTDDELSAMWRACPPTGDYSRIIRLLALTGARRDEVAELQWGEIDTAAAVWRLPAARSKN 286

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
           G    + L    + +LA TP      ++    +    + FS        + G       H
Sbjct: 287 GRPHVMHLSGPALDILAATPRIDGRPYVFGSGRGPF-SGFSKSKARLDRQLGFGEPWVVH 345

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKNSR 337
            +R+  AT  A  G     +       +         Y +   A   R+ +    
Sbjct: 346 DLRRTVATGMARLGTPIEVVEKALNHVSGTFGGLVGIYQRFDYAAERRIALDAWA 400


>gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
 gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC
           8482]
          Length = 483

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 93/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   +++ +  +           D   +++T   I          
Sbjct: 190 EDYEKQVEAGMKAKGTLAKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 249

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 250 KHCCTNTVWLYVCPLRTMVFIAINNEWLTHDPFREYE-IKKEETTRSFLTKDEIRLLMDG 308

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 309 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDDHEWINISRQKTGVVSNIRL 368

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      + +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 369 LDIAKRIIDKYRGLCEDGRIFPVPHYMTCLHGIRAVAKRCGITKHITWHQSRHTAATTVF 428

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 429 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 460


>gi|57650158|ref|YP_185756.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus COL]
 gi|262053200|ref|ZP_06025357.1| pathogenicity island protein, integrase [Staphylococcus aureus
           930918-3]
 gi|282926173|ref|ZP_06333808.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus A9765]
 gi|15625530|gb|AAL04148.1|AF410775_24 integrase-like protein [Staphylococcus aureus subsp. aureus COL]
 gi|57284344|gb|AAW36438.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus COL]
 gi|259158906|gb|EEW43993.1| pathogenicity island protein, integrase [Staphylococcus aureus
           930918-3]
 gi|282592314|gb|EFB97331.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus A9765]
          Length = 406

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/400 (12%), Positives = 106/400 (26%), Gaps = 71/400 (17%)

Query: 13  KERTRHGKIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K + +  K  YY +         RR+   L    + +   A          K        
Sbjct: 7   KNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTT 66

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            K  T      E+ +S          +  +  S  + + +    D    KIT  + +   
Sbjct: 67  LKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVF 126

Query: 124 ESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPC-------LSVERPKRKTEGIRP 173
           +   +        +  L+  + +F++  R   +              ++           
Sbjct: 127 DEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNK 186

Query: 174 W--------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +              TK                 L  EF   +G+R  +      + +  
Sbjct: 187 YLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDF 246

Query: 220 NIFSIKTQKTGTI--------------------ITVELPDGFMKLL-------------A 246
           +  S+    T                        T+ L     ++L              
Sbjct: 247 DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G + 
Sbjct: 307 DGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSL 366

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             +M   G          Y+   ++  +      ++  V 
Sbjct: 367 KAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|296162872|ref|ZP_06845653.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886909|gb|EFG66746.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 337

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 92/311 (29%), Gaps = 38/311 (12%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQI----IRKSGDFD----YRKITT 116
           K  +   L+  +         +L+  +   +            R+ G          I  
Sbjct: 8   KQPSFAALVQTFFTEYLVAQRALSPQTVACYRDALLLFLHFACRQLGKEPTTMRLADIQP 67

Query: 117 KHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             I + ++     RK++  S    LT++R   K+A R++  +++          K     
Sbjct: 68  NLILAFLDYLEQDRKNSVRSRNLRLTALRAFLKFAGRRDVASLHCVERALAVPMKRFERP 127

Query: 173 PWTKEDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                   +  +            +  L    L  +G R S+     V  +  +  +   
Sbjct: 128 MLNYLTRAEMVAVLGQPGESWSSRRDHLLLTMLYNTGARVSEIIGVRVVDVVLDGAACVH 187

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKAT 278
              K   + ++ L D  +  +                  N D Q M+ +  +       +
Sbjct: 188 LRGKGRKLRSIPLWDATVAEIRSWLRSNSAMRGEAALLPNRDGQAMSRSNVAQRLDLAVS 247

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           +A V +        S H +R  +A     A    + +    G ++      Y   AD   
Sbjct: 248 RASVEQPSLLKKRISPHILRHTTAMHLLQADVPFNVIALWLGHESPMTTHRYV-EADLA- 305

Query: 331 LGIKNSRRISS 341
           +  K   R+ +
Sbjct: 306 MKEKALGRLEA 316


>gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 412

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 76/257 (29%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           D   ++IT   I       + T              
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       T+++++          +    R  F 
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEQVRDVFI 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  +SGL   D       +++ +        T    T    +  +  +    + K    +
Sbjct: 251 FSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKGKL 310

Query: 258 NNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            N K    ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 311 PNGKVLPIISNQKLNAYLKEIAEVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLG 370

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 371 HTNIETTQIYARITNNK 387


>gi|158522744|ref|YP_001530614.1| integrase family protein [Desulfococcus oleovorans Hxd3]
 gi|158511570|gb|ABW68537.1| integrase family protein [Desulfococcus oleovorans Hxd3]
          Length = 364

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 92/327 (28%), Gaps = 30/327 (9%)

Query: 20  KIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           K  + +R      G+RI      +                K            +L +L  
Sbjct: 5   KTKWGYRAEFMHRGKRILAKGFFKYKDEARQWIKKEKEIAKNRQ-RYSSPDNLSLWYLAQ 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           +Y       + +  +    E    +     GD D  +I    I   +  R  + + ++A 
Sbjct: 64  KYLADCKL-NYSQKTFDEKEFCLTRFYNAVGDIDVTEIQPYTILDFINDRAIQQSNNAAN 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +   +++  + W      +  +P   V +    T+  R    +D+ +         Q R+
Sbjct: 123 KDRKNLKAFYSWLRDYYNILYDPVAVVRKKSHTTKTRRIIPIQDILKIIEA--AEGQDRV 180

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E   ++G R S+  R       N         T       +     KL     + ++ 
Sbjct: 181 MIEAYWHTGARKSEIFRWKWAEDINFEERWVRLGTRKSRDRAMSYE--KLWMNDDLYQQL 238

Query: 255 FFINNDKQKMNATQF-----------------SIWFKAKATKAG-VNKSAHGVRKFSATI 296
            +  +++   +   F                   + K     A  +  + H +R   A  
Sbjct: 239 SWQWDNRFPDSPYVFCNLDERSEHYGKPYVSRQRFIKGLCKTAEVLTFNYHDLRHTVAKY 298

Query: 297 SAD-AGATAHELMATYGWKTVDQAETY 322
             D       ++      +     E Y
Sbjct: 299 LNDLQNVPLKKVQQVLRHQKQTTTEIY 325


>gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 345

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 82/277 (29%), Gaps = 20/277 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
              ++ +++        A ++   +E  + Q+ +         D    ++    I +   
Sbjct: 53  FGEMMEDFKGRIGI-DRAQSTYKQYEVLYKQLKQFLREEYHVEDIPLTELDLPFIEALNF 111

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                RK  P +    +  +  + + A+ +  +   P    E  ++     +  T +++ 
Sbjct: 112 FFRVKRKMKPRTVKARIVLLNKVIRLALHRRIITRPPFDGFE-LEKTELKNKSLTNDELD 170

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITV 235
                  +    R   +  L+   +GL  +D  +   + +          +       T 
Sbjct: 171 LLMKTPLKSGTQRFIRDMFLFSTFTGLAYADVHKLSWKDIITEDDGSLWISANRQKSHTE 230

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                    + +    K           M+  Q ++  K  A   G+    S H  R   
Sbjct: 231 FNVKLLNIPIRIMEYYKGLAPDGKVFPHMSLGQVNVGLKRIARNCGINRKLSYHMARYTF 290

Query: 294 ATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           A+      G     +    G K ++  + Y +  +  
Sbjct: 291 ASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEK 327


>gi|227112895|ref|ZP_03826551.1| integrase protein [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 301

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 85/283 (30%), Gaps = 16/283 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +K L  ++ +         +++  ++S  D+ II   G    + +    + S ++   H 
Sbjct: 1   VKELCIKFMEDYSSQRNKPSTQEGYQSVIDRNIIPMLGRMKVQDLKRPDVASMMKKMAHK 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+ A +  + MR +F  A    Y           P            ++       + + 
Sbjct: 61  PADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPMYPNGKATHLISDEEMGKLFRYLDQ 120

Query: 190 SQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +          LA         R S+        +      +    + T    +     
Sbjct: 121 LEAEGLEHAVIPLAIRLQFEFAARRSEIIELQWDWIDLENRRVVWPDSKTGGMSKPMSEE 180

Query: 242 MKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
              L                  +  + ++  ++   +      AGV +   HG+R  SAT
Sbjct: 181 AYRLLSTAARNAMKPHVLPSPRHPDRHLSDGEYYSGWTRTLKAAGVTHVGTHGIRHRSAT 240

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
             A++G      MA    KTV     Y    D+ +R   +   
Sbjct: 241 DIANSGIPVKVGMALTAHKTVAMFMRYVHTEDKPVREAAELVA 283


>gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 320

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
           ++       A  +  S+  +  + I         K++   +   +       K    +  
Sbjct: 10  KEHMLTRYYANKTIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAIDEKVAVKTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++   +                 + +     T+++++  +       + +L
Sbjct: 70  LALNAISFLYRDFFKTPLSLDMRFQKS---LTEKKLPVVLTRDEVR--RFVQHIDPRYKL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGK 252
             + L  SGLR  +  R  +Q +  +  +++  +       TV L     + L       
Sbjct: 125 HIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNFA 184

Query: 253 ETFFINNDK----------------------------------------------QKMNA 266
             ++  +                                                  +N 
Sbjct: 185 RNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      K  A  A + K+   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 SAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTH 304

Query: 325 GADR 328
             +R
Sbjct: 305 VIER 308


>gi|303245431|ref|ZP_07331715.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493280|gb|EFL53142.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 394

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 89/310 (28%), Gaps = 19/310 (6%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVN 90
           R        +T      SA   +  + +          T K L+   Y   A     +  
Sbjct: 62  RAHTTGDGPATLAGKRESARIAAREQEQAEKQRNAAGATYKELVEAHYIPWAEREKKSAA 121

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAV 148
                      I    G     ++T + + +  +    +   ++A+Q L  +R  F    
Sbjct: 122 --ADKTRLKLHIFPVIGALTLDEVTPQVLEALRDKMVASHCRATALQVLALVRKTFNHLG 179

Query: 149 RQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLR 205
           R   +   NP   V+ P+      R +T ++  +F +   +        A    + +GLR
Sbjct: 180 RLGLHTLRNPVALVKLPRLDNACERFFTHDEFDRFLAAAGKLGNPDLHDACILAVDTGLR 239

Query: 206 CSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
             +  R     +       +++         V L      +L    +            +
Sbjct: 240 LGELNRLMPADVNLELGFLTVREADGKPGGVVPLNSRVRAMLQKRLLTIAPGQHIFRTTR 299

Query: 264 MNATQFSIWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATYGWK 314
               + S  F   A   G+N          + H +R    +  A A    + +      K
Sbjct: 300 DGDREMSRRFTRLARALGLNDGVTDRRQQLTFHSLRHTFGSWLALADVELYRIQKLMRHK 359

Query: 315 TVDQAETYTK 324
           T    + Y  
Sbjct: 360 TPAMVQRYAH 369


>gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
 gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316]
          Length = 352

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 106/312 (33%), Gaps = 54/312 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-------IRKSGDFDYRKIT-------- 115
           L   + +Y +S+    L+V++ + +   F          I K  D    + T        
Sbjct: 25  LPKFVQDYIESSRDY-LSVSTLLQYTYDFVDFFTFLSSRIEKYKDKPIPEYTLVDMMQLS 83

Query: 116 -------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                   K  +   +     P +  +FL+++  LF + V++  +A NP  +V RP  K 
Sbjct: 84  CEDMDECMKWYKHPDKDVFRKPRTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVKR 143

Query: 169 EGIRPWTKEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAG 213
           + +    + +  QF S    G+               +        L++G+R S+     
Sbjct: 144 KEVNRLYEGEKSQFLSAVMNGTGLTKRQLPYHERQWLRDYTIARVFLFTGIRVSELVGLD 203

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----------INNDKQK 263
           +  +     S++  + G  I     D    L+    + +              I+  KQ+
Sbjct: 204 ISDVNLREHSLRVVRKGGNIERVYLDDETDLILREYLAEREEMELTDDETALFISRKKQR 263

Query: 264 MNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +         K    +AG+       + H +R   AT    A    +      G K++  
Sbjct: 264 IGVRAVEKLIKKY-QQAGLPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIAT 322

Query: 319 AETYTKGADRIR 330
              Y + +D+ +
Sbjct: 323 TTIYAEVSDKQK 334


>gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
 gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris
           C735]
          Length = 308

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 87/306 (28%), Gaps = 37/306 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           K  T++ +   + KS     +  ++  ++     + ++   GD +   ++ K ++  V  
Sbjct: 2   KAKTIREIALAW-KSEKQRYVKQSTYAAYVLILENHLLSSFGDCEV--LSEKLVQEFVLQ 58

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +      +    L  +R++ K+ V+  ++                 I   T    ++ 
Sbjct: 59  KLNAGLSIKTVKDMLIVLRMVMKFGVKNGWMNYCEWDIKYPTTEGNREIEVLTVAQHKKI 118

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             F  +    R L     L +GLR  + C      +  +  +I   +T   I +   +  
Sbjct: 119 LDFIRQNFTFRNLGIYISLTTGLRIGEICGLMWADINTDTGTITVSRTIERIYIVEGEHK 178

Query: 242 MKLLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKA 275
              L +     +                                         +  ++  
Sbjct: 179 HTELVINTPKTKNSCREIPMNKELLAMVKPLKKVVNVNFYVLTNEEKPTEPRTYRNYYHR 238

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLG 332
                 +     HG+R   AT   ++      +    G   +      Y     ++ +  
Sbjct: 239 LMKHLDIPWLKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMEQKKRC 298

Query: 333 IKNSRR 338
           I    +
Sbjct: 299 ITQMLK 304


>gi|225873175|ref|YP_002754634.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792791|gb|ACO32881.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 425

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 102/305 (33%), Gaps = 25/305 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A T S      I+     P  ++  +  +  +     +   +   + +   ++    G 
Sbjct: 98  EAATHSARILASISKVHDAPAIIETAVQAFLANCETNGVREPTIRKYRNSLRRLATFMGS 157

Query: 109 FDY---RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
            D    R +T   + S   SR+  P ++++ L ++R  F + + ++    N  L ++ PK
Sbjct: 158 KDIHYVRDVTVTLLDSFRASRELAPITSLKELETLRAFFSYCMARDLCKANIALMIKGPK 217

Query: 166 --------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
                     T           QQF     E  +       L ++ LR SD        +
Sbjct: 218 IVSPNDVEPYTPEEVELIIAATQQFGRNAYERKRALAIILTLRFTALRISDVAVLRRDRI 277

Query: 218 Q----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                  +  I+  K    + + +P    + L   P+ +E             +      
Sbjct: 278 SKEGGRWVVFIRATKNNKRVYLPIPREMKEALDNVPVPREAMADCPYYFWSGKSTVRSIV 337

Query: 274 K-------AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                   A   K+GV K  AH  R   AT    AGA+  E+    G  +VD   + Y K
Sbjct: 338 TVIGESVGAVFKKSGVKKAHAHRFRHTLATELLAAGASFEEVADVLG-DSVDVVKKHYAK 396

Query: 325 GADRI 329
            ++  
Sbjct: 397 WSEAR 401


>gi|167757961|ref|ZP_02430088.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
 gi|167664393|gb|EDS08523.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704]
          Length = 349

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 74/269 (27%), Gaps = 24/269 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----------V 123
           LI  YR       LA  +   +     ++I +  D     I    I              
Sbjct: 67  LIDLYR--LKKSRLAKETMDQYIGAITRLITQV-DKPLTDIDEIDIDYYLRYYENRNVKN 123

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              K+  S+       +   F W  ++++V  NP      PKR+      + +    +  
Sbjct: 124 NRGKNQASTCNNERRYLSAFFTWLRKEKFVTYNPVE-CVEPKRERRKPIDYFRPGQMEEL 182

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----- 238
                  + R   E L  +G R  +        +  N   +            +      
Sbjct: 183 REGCITLRDRALVEALRSTGARVGEIVPINRDDIDWNTGDVTILGEKGGRYRVIYLDEVA 242

Query: 239 -DGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                K L       E    +  +   +++ T      K  A +AG+      H +RK  
Sbjct: 243 RYHLRKYLESRKDENEALFVWERSPHNRLDKTGIRASLKTIAGRAGLKCRVYPHKMRKTL 302

Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322
                + G    ++    G    +    Y
Sbjct: 303 GMQLKNQGVDIGDIQEILGHSNPNVTSRY 331


>gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
 gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759]
          Length = 411

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 88/380 (23%), Gaps = 73/380 (19%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G+  Y +    G++  +   +  + +            + + ++        + +
Sbjct: 18  YRKGDGRYSYVYIDPLGKKRTI---YAQSLVKLREREEQLQKDQLDGLDVYVAGKADVNF 74

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   Y  +     L   +  ++   ++       G    R +    +        +    
Sbjct: 75  LFDRYISTK--TELRSTTYSNYLYTWNHFIRDTFGKKKVRDVKYSDVLFFYTDLINNQGL 132

Query: 133 AIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            I  L ++  + +            R+  V    C   +R     +  R  T +  ++F 
Sbjct: 133 QINTLETINTVLRPTFQLAVRDDIIRKNPVDGAYCEVKKRNGGARKTRRALTVDQQRKFM 192

Query: 184 SFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTG 230
            + ++       +    FLL +G R  ++       +           +  +  +   + 
Sbjct: 193 EYVAKNPFFYHWYPFFVFLLGTGCRIGEAIGIRWDDIDLENRVIDINHSLTYYQRADDSY 252

Query: 231 TI-------------ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                            + +      +L                        F N     
Sbjct: 253 KCEFRVSLPKTEAGNRRIPMMQQVYDVLQEEYERQKQEGFCVENVDGMTNFVFTNRFGMP 312

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   K                           S H  R   A+   +       
Sbjct: 313 HNPAAVNRAIKRIVDTHNSEEEVAAKKEKREPVMIPRFSCHIFRHTFASRFCENETNIKV 372

Query: 307 LMATYGWKTVDQAE-TYTKG 325
           +    G   V      Y + 
Sbjct: 373 IQEVMGHADVSTTMNIYAEA 392


>gi|222151187|ref|YP_002560341.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120310|dbj|BAH17645.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 384

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 101/356 (28%), Gaps = 53/356 (14%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           ++  Y+   +G+R  +    +          L     +   +N  +    TLK  I EY 
Sbjct: 12  RVRVYYYDENGKRRTISKNVKKERDA---KKLARDLERDVELNKCKTDIPTLKSFIDEYI 68

Query: 80  KSAHWGSLAVNSR-------------ISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++   G ++  S                +E     +++     +    K+T    +  + 
Sbjct: 69  ETYRVGKVSQASIDIDKWSAKRLFSIRIYENKKLIEEVKLHDENIRIDKVTPTMQQKVIN 128

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  S      +  ++F+   R ++  +      E  + +        +   +    
Sbjct: 129 KLFEYNYSISTIKKTNSLMFRAMERAKFDGLISVNPAEYIEFRITDKVKKAEYIPKDLIK 188

Query: 185 FWSEGSQPRLAFEFLLY-----SGLRCSDSC---------RAGVQHLQNNIFSIKTQKTG 230
            +    + R  + + L+     +GLR  ++C               + ++    +     
Sbjct: 189 PFLTDVKRRNIYHYYLFRLIIETGLRVGEACALKLSDFDKNNLYITVDSSYDQKRDVLGN 248

Query: 231 TIITVELPDGFMKLLAMTP-------------------IGKETFFINNDKQKMNATQFSI 271
           T           + L                             F+N   + ++ +    
Sbjct: 249 TKTKHHRKVYITRELYDEMLNLTKLHETNKIIIGSEYSNEYNFLFVNEFGKPLSRSSIHN 308

Query: 272 WFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
                + K  G   S H +R   AT+  +A      +    G ++++  E  Y   
Sbjct: 309 TMIYCSKKILGQQISVHKLRHTHATLLLEANVPMKVIQERLGHQSMEMTERIYAHV 364


>gi|167841449|ref|ZP_02468133.1| probable site-specific [Burkholderia thailandensis MSMB43]
          Length = 328

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 101/321 (31%), Gaps = 31/321 (9%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  G   R       T    +   +     +  ++++     TT+  L+  Y +      
Sbjct: 5   RKKGFPARSKKFDTKTEALEWGRIVEAEMDRGLFVSTDEADRTTVADLLDRYTRDVSPTK 64

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLF 144
            +  S        +++ ++ G +    +T+ H+    ++R  + +P + I  L  +    
Sbjct: 65  RSGGSDKGRA---EKLKKQLGAYKLTALTSSHLVGYRDARLKEVSPQTVIHELNLLNRAL 121

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             A R+  + +   +      RK +G       D  Q     +E    R      + +G+
Sbjct: 122 TLATREWGIVLPSGIPKVIKPRKPQGRDRRLHPDEIQAIIDATESPDLRDFIRLAVATGM 181

Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           R  +      +++        +   KT T  TV L      +L      + T        
Sbjct: 182 RRGELASLRWENIDLDRRTAHLPLTKTDTPRTVPLSSVATAVLQARKDARYTVPF----- 236

Query: 263 KMNATQFSIWFKAKATKAG-------------------VNKSAHGVRKFSATISADAGAT 303
            + A   +  F     +A                    V    H +R  + +   + G  
Sbjct: 237 ALTANALTRAFCRAVQRARGLYESTCRVLERPVDPQWLVGIRLHDLRHEATSRFFELGLQ 296

Query: 304 AHELMATYGWKTVDQAETYTK 324
             E+ +  G KT+   + YT 
Sbjct: 297 TVEVASITGHKTLAMLKRYTH 317


>gi|148358336|ref|YP_001249543.1| putative lambdoid prophage Rac integrase [Legionella pneumophila
           str. Corby]
 gi|148280109|gb|ABQ54197.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           str. Corby]
          Length = 359

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 86/278 (30%), Gaps = 27/278 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ +Y + A   +L  ++   +    +  +    GD   + +++  IR+ V  
Sbjct: 49  VKSTVGELLKQYMEIAE-KTLEPSTFNGYRKACEAHLYPAFGDIPVKDLSSMMIRNYVTK 107

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183
            + T  +    LT +R     A+    +  NP   +   +   K      W  +   Q +
Sbjct: 108 LQLTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRRSNWEVDPFNQDE 167

Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQK 228
                     Q R  F+F  YSGLR S+        +      ++            T+ 
Sbjct: 168 IKAILSEAKGQARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGTKT 227

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAG 281
                 V L    ++ L                     T +          +     KAG
Sbjct: 228 KSGQRDVLLLPPALEALQNQKKFTFLEGGRVFYNPRTNTPWETDGQIRKTCWAHILKKAG 287

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           V     +  R   A++   AG  +  +    G K  + 
Sbjct: 288 VRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 325


>gi|116512382|ref|YP_809598.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108036|gb|ABJ73176.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 372

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 115/375 (30%), Gaps = 46/375 (12%)

Query: 11  VTKERTRHGKII----YYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPR 65
           +  ++ ++ K      Y  R+G  ++  +             +  L              
Sbjct: 1   MYIKKLKNEKYQFILKYQDREGKTQKASITLKGNTKAIQKQALEKLKEKVQLNLNKADIV 60

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            K +TL  +  ++  +     +  NS  S+ S     ++K  +++ R I   HI++ + +
Sbjct: 61  VKDSTLNIVYEQWLVTL-VNQVRNNSYTSYISAIKSFVKKYSNWNIRDIKPIHIQNYLVT 119

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----------TEGIRPWT 175
                 +       +  LF +A +  Y+ +NP  +V  PK             + I    
Sbjct: 120 NGWKIKTIKHKKVILYSLFDYARKMTYIELNPVNNVVLPKHNSSVEDFEISENKTITYDE 179

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228
            + + ++    ++  +  L  EFL  +GLR  +        +     +IK +        
Sbjct: 180 LKIVLEYCHKHNKNQRLTLIIEFLFLTGLRLEELGGLQKSSVDFKKQTIKIKHVIDTKAI 239

Query: 229 ------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFK 274
                         +   + + D  +++L                          +  F 
Sbjct: 240 GDNSRKLYLPKTFASRREIYVNDRCIEILKWFFDNSLDDDFVFTTMIGTTVKQSATYLFV 299

Query: 275 AKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
               +A +        + H +R    ++ A+        M   G          Y+  + 
Sbjct: 300 RNVCEASLGKQKNRKYNVHMLRHAHISLLAELDIPIKATMKRVGHSQESTTLRIYSHVSQ 359

Query: 328 RIRLGIKNSRRISSV 342
             ++     R+++ +
Sbjct: 360 --KMNDSIMRKLNEI 372


>gi|240948188|ref|ZP_04752588.1| phage integrase family protein [Actinobacillus minor NM305]
 gi|240297481|gb|EER47995.1| phage integrase family protein [Actinobacillus minor NM305]
          Length = 420

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 21/284 (7%)

Query: 67  KPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +P T+     S Y   A     + +       +   I    G   Y  +    I      
Sbjct: 127 QPMTVSAFFWSVYLPYAKQRKRSWD--KDESRFRLYIEPYIGKVIYSDLKALQIYQIQSD 184

Query: 126 R--------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P++  + +  ++ +  +A R EY++ N  L V   K   +  R ++ E
Sbjct: 185 MISGNHYPRAFSPATCNRTIALLKTMGNFAYRLEYISENVALKVPLLKENNQRSRYFSLE 244

Query: 178 DMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTII 233
           +M+                    LL +G R ++  +A  ++  +   I  +   K G   
Sbjct: 245 EMKALLYHAEFYPNKYAGSLIALLLLTGARRNELQQAKWEYLDVNAQILYVPNTKNGKPR 304

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVN----KSAHG 288
            + L D  M  L          +I   K  +   +      K    KAG+        H 
Sbjct: 305 EIYLSDEAMYWLNRLERDVGNPYIFARKGSVKPISAPRFALKQLLKKAGITDIDGICFHT 364

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL 331
            R   AT+   +G    +++ A     ++  ++ Y K  +  + 
Sbjct: 365 ARHSVATLLISSGKFNLYDVKAQLAHASIQSSQRYAKLTENRQR 408


>gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 279

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 7/274 (2%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +  P   +  I+ + +S     L+ ++  +         R   D     +T++ +    
Sbjct: 8   KKLPPAQWRDEITLWLESLTAAGLSQDTVNTRRCKIGHAARCL-DKSPYDVTSEDLVHWT 66

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            S+     +   +  ++   F+W       A +P  ++  PK +     P    D   + 
Sbjct: 67  ASQSWKAETRKGYRNTLVGFFRWLHATGRRADDPAAAL--PKVRKTRPHPRPCPDAHIYA 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +  +     RL       +GLR S+      + +            G      +      
Sbjct: 125 AMCAANDVERLMLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISED 184

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           L           F    +  +  +  S                H +R   AT   +    
Sbjct: 185 LAKRITAAPGWLFPGRWRGHVEKSYVSRHLTRLLPD---GWGPHSLRHRYATRMYETTHD 241

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
              +    G  +V+  + Y    D R+R+G+   
Sbjct: 242 LLLVSKLLGHSSVETTQIYVAMPDSRLRVGLDAV 275


>gi|255281125|ref|ZP_05345680.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255268082|gb|EET61287.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 394

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 102/341 (29%), Gaps = 39/341 (11%)

Query: 16  TRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            +     YYFR         G++I+    +  T   A   A +          + +K+  
Sbjct: 7   KKADNGTYYFRANLGKHPVTGKQIQKYRSNFKTKKEA-REAYSKLVLASAEELTEKKETV 65

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           + +  I E Y        +  ++  +  S   +        D  KI   H+++       
Sbjct: 66  SFQNFIEEIYLPWYK-TQVKDSTYKNRYSTIQKHFAYFYKMDTDKIEPIHVQNWQLKLAK 124

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P+        + + F  A+    +  NP   +   K K   +  WT E+ Q+  S  
Sbjct: 125 NFSPNYVRIVQGMLCIAFDRAIILGLIDKNPARMIGNVKSKKPKVDFWTLEEFQKVISLL 184

Query: 187 SEGSQP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIFSIK 225
            +G      L   F L   +G+R  ++       +                        +
Sbjct: 185 YKGDYYEHYLFISFWLLFMTGMRIGEAAALQWDDIDFETGILSINKSLYYKSMTEYHFTE 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATK 279
            +    I  + + +  +K L               F ++      +        +  A  
Sbjct: 245 PKTQAGIRDIVIDEDTIKELKEWKEVQQKVLTNCNFVMSYSGIPTSKHTLPRALEKLAEL 304

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           AGV++   H +R   A++    G     +    G + +   
Sbjct: 305 AGVHRIKIHALRHSHASLLISMGENPLIIKDRLGHEKIQTT 345


>gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 397

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  ++    E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLNEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKHPKAEPFVIDGRSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWFKAKATKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +    K  K        + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMIKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)]
          Length = 293

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|289626137|ref|ZP_06459091.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330869561|gb|EGH04270.1| integrase family protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 418

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 114/370 (30%), Gaps = 43/370 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +    +  G + + +    +GRR  L      P   +   A    +             
Sbjct: 24  GMYVTVSPSGTVTFRYDYRLNGRRETLTIGRYGPAGISLALAREKLIDAKKSVAQGKSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++          T   +  ++   A    +A +++   +S  D+ I+    +    +I
Sbjct: 84  LEKQREKRRLTAAKTFGEMTGKWLAGAR---MADSTKAMRKSIVDRDILPAFENRQLNEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T+  +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TSDDLRALCNKVKERGAPATAVHIRDIVKQVYAFAILHGEKVENPAADVGAASIATFVPK 200

Query: 173 -----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
                P     M +     +     RLA   +L + +R S+  +A    +          
Sbjct: 201 DRALSPLEIRLMARQMESVATYPTIRLALRMILLTLVRKSELIQATWDEVDFENATWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           ++        +     + L +                  +  +         + +     
Sbjct: 261 KQRMKGRNPNVVYLSRQALDIFVALHTCAAGSKFVLPSRYDADRCMSNATLNRVTQIVAE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRI 329
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A++ 
Sbjct: 321 RAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEDGRSSRSIYNKAEYAEQR 380

Query: 330 RLGIKNSRRI 339
           R  ++    +
Sbjct: 381 RHMLQEWANM 390


>gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 430

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 79/275 (28%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + +   G  D     IT           + R    S+    L  +  L   AV + 
Sbjct: 136 RNLREFVENKGVQDIPIGAITEDLFEEYRFFLKKRGLKASTVNSNLCWLSRLIFRAVSKR 195

Query: 152 YVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  NP  + +  K + +    +      +   K    E    RL F F  ++GL  SD 
Sbjct: 196 IIRCNPFENAKYEKEEKKIRFLQKSDVMKLMAMKMNDREAELARLVFVFSCFTGLAISDM 255

Query: 210 CRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-----------T 254
                +H+Q      ++  K ++      +       + +      +             
Sbjct: 256 ENLEYKHIQTAAEGQMYIRKERQKTKAEFIVPLHPIAEAIISHCQKEPERSEVQQTVKEK 315

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312
                  +  + +             G+    S H  R    T+S  AG     +    G
Sbjct: 316 DDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMG 375

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D      ++  R+ +   + +
Sbjct: 376 HASISSTQVYAQVTDNK--ISEDIDRLIAKQSAKE 408


>gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 357

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 278 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR 337

Query: 322 YTKGA 326
           YT  +
Sbjct: 338 YTHVS 342



 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA        +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLT 116


>gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 472

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGF 241
               +   +     E L  SGLR S++    V     +        K        L D  
Sbjct: 251 LHAEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTS 310

Query: 242 MKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
              L      +           F+     +++  Q +    A   +AG+ +S   HG+R 
Sbjct: 311 ADALREWLHFRHHLASEGERALFVGARGGRLDRRQATRIIDALCRRAGLPQSVSPHGLRH 370

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             AT   +AGA    +    G   +   + YT 
Sbjct: 371 SFATHLLEAGADLRSVQELLGHARLATTQRYTH 403



 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 22/156 (14%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSL 87
            G R        ++F           +            P TL      +          
Sbjct: 13  RGPRSAARGRGGASFSQ---------SDGDPATGGDAAVPETL----ELFLAHVELEKGY 59

Query: 88  AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139
           +  +  ++ +   Q          G      +T +H++  +      +   SS  + L++
Sbjct: 60  SPATVTAYGTDLMQFHGVLTAEGFGLDAPENVTRRHVQRYLAELHRLRTARSSVARKLSA 119

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  F++ +R   V  +P  +V  P+++    R   
Sbjct: 120 LRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLN 155


>gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           NCC2705]
 gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C
           [Bifidobacterium longum NCC2705]
 gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 357

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 278 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR 337

Query: 322 YTKGA 326
           YT  +
Sbjct: 338 YTHVS 342



 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA        +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLT 116


>gi|256847460|ref|ZP_05552906.1| integrase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716124|gb|EEU31099.1| integrase [Lactobacillus coleohominis 101-4-CHN]
          Length = 373

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 113/361 (31%), Gaps = 46/361 (12%)

Query: 14  ERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKK 67
           E+ + G   Y  R         +++ +     + F        L     KR   N   +K
Sbjct: 4   EKNKSGSYKYSERYKDPLTGKLKKVTISLDKNNKFTAKKAQMILEAKIQKRLQENGKVQK 63

Query: 68  PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES 125
             TL  +I E+     + + +   +   ++    +I    G D    K+  +++    E 
Sbjct: 64  GVTLGQVIEEW--EPIYRNQVRPTTFSHYDQVKKKIEHYVGFDTLVNKMDDRYLIQLCER 121

Query: 126 RKHTPSSAIQFLTS----MRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKE 177
             +  + +   + +    +  + ++A +++YV      +  ++ ++   +    +     
Sbjct: 122 LLYKENMSNVIVRNIYWKLSAILRFAYKRDYVTQSPRNHLDINWKKETHQKIAKKFLEDS 181

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224
           + +    +  + +      FE+   +G+R  ++    V+++  +  +             
Sbjct: 182 EAKAVLDYVYQHNHQHGAIFEWQYLTGMRIGEALGMQVKNIYEDKGNYYAQVTGTLIYTD 241

Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----------MNATQFSIW 272
            KT         +   G   +L      +     +  KQ             + T  +  
Sbjct: 242 LKTSDYYKQDATKTASGLRSVLLPNRAVQLYKEWSFGKQPDDFLFVYDNRFFSFTTLNRQ 301

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
                   G++K  + H  R    +  A+ G   + +    G          Y    ++ 
Sbjct: 302 LFNAKKFLGIDKELTTHTFRHTHVSKLAELGVPLYIIEDRIGHANSATIRNVYLHVTNKA 361

Query: 330 R 330
           +
Sbjct: 362 K 362


>gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                      +  +   + I  +       +  ++     +  K     +GVNK  + H
Sbjct: 65  HKYRGASREWAWQFVFPSSRISLDPRRSVRRRHHVDENVLQVAVKRAVRASGVNKPATCH 124

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +R   AT   + G     +    G K V     YT   
Sbjct: 125 TLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 408

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 98/310 (31%), Gaps = 23/310 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS---- 106
               R +     ++ TT   +  ++ +        +++ +S   +               
Sbjct: 92  LEKIRSFFIGKDREYTTFLPIFDKFNEDIKQRVGHTISKDSLQKYSVLRRHFSEFLIHKY 151

Query: 107 GDFD--YRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           G  D    + T   ++              +++++ + +++ +  +A ++ Y+  +P L+
Sbjct: 152 GRKDIGLTEFTPSVVQDFELYLSTVAGCAYNTSVKKMKALKTVTIYAQKRGYLLHDPFLN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                 +       T E++ +  +      +    R  F F  ++GL   D       ++
Sbjct: 212 HRF-HLEPVNRGFLTDEEIMKIANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNI 270

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                           +VE     + +    +     +T+        +   + + + K 
Sbjct: 271 VTLDDKQWIMTKRQKTSVETNVLLLDIPKRIIAKYSGKTYRDGKLFPILTNQKTNAYLKE 330

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
            A   GV K  + H  R   AT+S   G     +    G   +   + Y +  ++     
Sbjct: 331 IADLCGVKKNLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHD 390

Query: 332 GIKNSRRISS 341
             + + ++  
Sbjct: 391 MEQLADKLGK 400


>gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586]
 gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586]
          Length = 320

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 84/301 (27%), Gaps = 53/301 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           R+       A  +  ++  +  + I          +  K +   +         A +  +
Sbjct: 10  REFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTDLAVQGKVATKTQS 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L           ++  +  +R + + +     T+++++          + +L  +
Sbjct: 70  LALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRCLLDV--VDPKYQLPAK 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------------------TG 230
            L  SGLR  +  R  VQ +  +  +I+  +                             
Sbjct: 128 LLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRY 187

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------------MNATQF 269
               +   +     L      K        +                       MN T  
Sbjct: 188 YDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVL 247

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   D
Sbjct: 248 QKTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 307

Query: 328 R 328
           R
Sbjct: 308 R 308


>gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946]
 gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946]
          Length = 385

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/363 (10%), Positives = 89/363 (24%), Gaps = 49/363 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + + G+                  +  T   A   A       R       +  +T   
Sbjct: 9   RKRKDGRFEVRLTLRENGVPVQVSVYAQTAAEAERKARD--LKTRAERGQFTRDRSTTAG 66

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVE 124
               + +      +   +   +       +            G    +++   HIR  ++
Sbjct: 67  YARLWLE-RKAKEVRPRTAELYRLELSYALPSLQDPEAPDALGSRPLQEVKPAHIREVLD 125

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +++  +       +  +F+ A+  E +  NP   V     + +      +      
Sbjct: 126 GLSKRYSIRTVKMVRQRLWQVFRDALDMELIYRNPVDPVRIKTPRGQSKAKVGRALEPHE 185

Query: 183 KSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------- 217
            +         +  +  LA   +L  GLR  ++     Q L                   
Sbjct: 186 IAALLSALDQHKDPRTALALRLMLACGLRRGEALGLQWQDLDLGAGTLTVTRAWTDDGKR 245

Query: 218 --------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                     +  ++           +    + + L         F  N+  + +N    
Sbjct: 246 GVLTLPKTHTSGRTVPIPHATLERLQQYRAWYAERLGDPRPEAWVFPGNDPSKPLNPHAP 305

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
           +   K    + G+     H +R    +     GA    +    G    +     Y    +
Sbjct: 306 NWALKRITERLGIGPLRVHDLRHSYGSHMLANGAPLELVSERMGHANANITLGVYRHVLE 365

Query: 328 RIR 330
             R
Sbjct: 366 HER 368


>gi|51035330|emb|CAF32679.1| hypothetical protein [Oenococcus phage fOg30]
          Length = 364

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/336 (8%), Positives = 86/336 (25%), Gaps = 28/336 (8%)

Query: 16  TRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R         +    G  +RI             + + +           + +     L
Sbjct: 5   KRGPNWYARVSRPNSRGGYQRINKGGFSTKREAQTWEAEVLTGKE------TKKDSDLLL 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                ++ ++    +L   +  +++S +  + +   D           +  + +    H 
Sbjct: 59  ADYFKQWYETYKL-NLENQTLSAYKSTYLLLKKYEPDTLLTDFNRGKFQQLINAYGKNHA 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  +    +    K A   + +     L +                + ++ +   +  
Sbjct: 118 MNTVKKRKVLIAASLKDAYADKLINDPVDLRINLVYSNKGKSADLKFLEKEEAQKLINYC 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVE 236
            +      FLL + +                         +  +      +   T     
Sbjct: 178 IENHSLSNFLLLTCILSGARFGEISALVMSDIDQNARTISITKSKEQKTDKIKSTKNETS 237

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                M ++    + K +F  + +         +   K    K      + HG+R   A+
Sbjct: 238 NRVISMPIVRFQQLKKYSFDSDKELYPYTDQSMNRHLKVLCNKLDTKSVTIHGLRHTHAS 297

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +    G +   +    G   +   E  Y+   +  R
Sbjct: 298 LLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333


>gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 380

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 97/355 (27%), Gaps = 51/355 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F    G+R  +   +  T         T      E   +      TL     
Sbjct: 18  KDGLYQARFTNRFGKRQTI---YAKTLNEVRHKLRTEQYN-DEKAINVVDTNMTLDEWFD 73

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +  +    +   ++++ + +++ +I  + G      +    ++      K T ++    
Sbjct: 74  IWLSTCK-KNCRNSTKMLYITHYKRIQGELGWRKLTSLNLIVMQEAFNKLK-TDNTRKHS 131

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            T +  +   AV  + +  N    +       + +  R  T ++ + F           L
Sbjct: 132 KTILVDMLNKAVDADLLVKNVAKQINTVISKEEKKERRVLTVKETELFLEQAKGNFYENL 191

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------------- 229
                L +GLR  +      + +      +  + T                         
Sbjct: 192 FILA-LETGLRVGELSALQWEDVDFKNKVLHVRHTLCYFSKNGKYVFEMHDTKTNNGKRT 250

Query: 230 -------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA----- 277
                     +  +       +L      +E   +    +K   T+  +  +        
Sbjct: 251 IPLTAKAIHSLKCQRIQKQEIILKGRTAEEEFQNLVFVTRKNRPTKLGVINRCIRSVIQN 310

Query: 278 -TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327
             KAG+     +AH  R   AT + + G     L    G  T+      Y    +
Sbjct: 311 INKAGIDFLPFTAHTFRHTFATRAIECGMNPKTLQKILGHGTLQMTMDLYCHVTE 365


>gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium]
 gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium]
 gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium]
          Length = 316

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 75/305 (24%), Gaps = 58/305 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+   R +      +  +  ++  +  + I         ++    + + +      R+ +
Sbjct: 17  LLDRIRAALRLRHYSYRTEQAYVHWAKRYILFHDKRHPEQMGAAEVEAFLSALATERQVS 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L++  + Q+   +      +    + +     T+E+  +        
Sbjct: 77  ASTQNQALAALLFLYREVLGQDLPWLENLTRAK---PREKRPVVLTREETSRLLDR--LT 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------------------ 219
               L    +  +G+R  + C+  ++ +                                
Sbjct: 132 GVHALMGRLIYGTGMRLMECCQLRIKDVDFGLREITIRSGKGGKDRVTMLPASLLEPLQA 191

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-------------- 265
                +                   LA       T +        +              
Sbjct: 192 QCVQAREWHDADRQAKAPGVFMPDALARKYPRASTSWSWFWLFPASQHSTDPVSRIIRRH 251

Query: 266 ---ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +     AG+    + H +R   AT    +G     +    G   V    
Sbjct: 252 HLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTM 311

Query: 321 TYTKG 325
            YT  
Sbjct: 312 IYTHV 316


>gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
 gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205]
          Length = 298

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 73/277 (26%), Gaps = 10/277 (3%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            ++         +  IS + K       A  S   +     Q +         + T   I
Sbjct: 5   TLDKAIAAIPKFRDRISFFTKKLRLAQYADGSIYDYRLKIAQAVLFF-KKLLDEFTQTDI 63

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + +       ++ F   M    +   +   +     L +   ++     R  ++E +
Sbjct: 64  DYYLSTLLDKNRCSLSFFKHMIFGLQAYYKVMGLKQPDGLVLPPVRKPKRLPRVLSQEQI 123

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +     S   +  LA  +     +  +   R            +   K      V + D
Sbjct: 124 ARLLRNCSLYDKTLLAIIYDCALRVGEACRLRWDDICFDRKKLFVFQGKGRKDRYVPISD 183

Query: 240 GFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             + +L        +               ++      I  K    +  ++   + H +R
Sbjct: 184 QMLVVLKAYRKKYPSDDYVFKSHGSKTEPQRITPGYVRIILKNALARVVLDHSITIHDLR 243

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             +AT   + G     +    G   +     Y   AD
Sbjct: 244 HSAATHLLENGENIVHVQKRLGHARLTTTMVYLHVAD 280


>gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329]
          Length = 320

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 84/304 (27%), Gaps = 59/304 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
           ++       A  +  S+  +  + I         K++   +   +       K    +  
Sbjct: 10  KEHMLTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAIDEKVAVKTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++   +                 + +     T+++++  +       + +L
Sbjct: 70  LALNAISFLYRDFFKTPLSLDMRFQKS---LTEKKLPVVLTRDEVR--RFVQHIDPRYKL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGK 252
             + L  SGLR  +  R  +Q +     +++  +       TV L     + L       
Sbjct: 125 HIQLLYGSGLRIMECLRLRIQDIDYYYGAVRVWQGKGGKNRTVTLAKELHEPLKSQMNLA 184

Query: 253 ETFFINNDK----------------------------------------------QKMNA 266
             ++  +                                                  +N 
Sbjct: 185 RNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQLRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      K  A  A + K+   H +R   AT   ++GA    +    G   V   + YT 
Sbjct: 245 SAIQRAVKRSALDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTH 304

Query: 325 GADR 328
             +R
Sbjct: 305 VIER 308


>gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489]
 gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489]
          Length = 423

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 88/270 (32%), Gaps = 20/270 (7%)

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141
            +      +   + +  + + +         ++    +      +    ++ ++ +  +R
Sbjct: 143 KFLEQKRKTTDIYLNQLNFEFLSHF------ELFLSEVWPTGHPKALGNNTRMKHIQRLR 196

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198
            +   A   E++  +P +  +            +++++++ ++         + R  F F
Sbjct: 197 KVVTLAYHLEWIDKDPFVRWKM-TYDKTNREFLSEQELKKLENKVFISERLDRVRDLFVF 255

Query: 199 LLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             Y+G+   D       HL            K QKT T + V L    + ++        
Sbjct: 256 SCYTGISYVDIMNLTPNHLVLGIDGGYWIMTKRQKTNTTVKVPLLGQALDIVNKYKDHPV 315

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMAT 310
           T   N+    +   + +++ K  A   G+NK  + H  R   AT      G     +   
Sbjct: 316 TAVNNSLLPVLTNEKLNMFLKEVANFVGINKNLTFHMARHTFATTVTLSNGVPIETVSKL 375

Query: 311 YGWKTVDQAETYTKGADRIRLG-IKNSRRI 339
            G   +   + Y +  +      +   + +
Sbjct: 376 LGHSKIATTQIYARVLENKVSADMNALKNV 405


>gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103]
 gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103]
          Length = 348

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 88/333 (26%), Gaps = 37/333 (11%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y +    +RIR  +P       +Y   L      R +I   +    +L
Sbjct: 4   RKLSSGKWLCECYPQGRDKKRIRKTFP-TKGEAVSYEQFLMNEVANRPWII-EKTDKRSL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             L   +         +++S +        II   G+      +        + R     
Sbjct: 62  LELAELWYD---LHGQSLSSGLMVFRKLKLIINALGNPRALDFSANDFAHYRKKRLSGEI 118

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                     + ++       M  +F   VR  E+ A NP   + +       +     E
Sbjct: 119 YLDKRFPYAASNTTLNMDQAHMNSMFSELVRLGEWSAPNPLEKLRKLTTTEREMAWLDSE 178

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +                    L +G R S++       L  N  +    K+    TV +
Sbjct: 179 QISSLLLVTESEPDLNRIVRVCLSTGARWSEAQNLRKSQLSPNKITFTNTKSKRNRTVPI 238

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFS 293
              F K L+           + +            F      AG+        H +R   
Sbjct: 239 TKDFYKELSSIKQENLFGDCHYN------------FLRAIKNAGIELPKGQMTHVLRHSF 286

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +      G     L    G   +     Y   A
Sbjct: 287 SAHFMMNGGNILVLQKILGHHDISMTMRYAHFA 319


>gi|196229377|ref|ZP_03128242.1| integrase family protein [Chthoniobacter flavus Ellin428]
 gi|196226609|gb|EDY21114.1| integrase family protein [Chthoniobacter flavus Ellin428]
          Length = 354

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 106/335 (31%), Gaps = 22/335 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R +HG      +   G++IR     + + +     A       + +  +   +  T   
Sbjct: 15  YRNKHGTYFALLKVR-GKQIRRSLKTDDSALARRRLA---EFRTKAHGLTGDARTMTFNQ 70

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
           L   +        L  +S        + +         R I    I      R    +  
Sbjct: 71  LAKRWLAFIKP-DLRPSSHRRLSGIVETVKPFFAGLPVRSIGQPQIEKWKIKRGGAVSAR 129

Query: 132 SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S       +R LF++A      +  NP L +++ K     +   TKE  ++         
Sbjct: 130 SFNYEREVLRRLFEYARGNLRIILDNPALDIKKRKVGKAELVIPTKEQFRKLVETLRAEP 189

Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIF------SIKTQKTGTIITVELPDGF 241
           + ++A    EFL YSGLR +++ +   + +  +          +  K   + T+ L    
Sbjct: 190 RVKIAADFVEFLGYSGLRLTEATQVRWRDVNFDSELLLVTGGEQGTKNHEVRTIPLFPPL 249

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
            +LL      +     ++    +              K G+     H +R F  + + +A
Sbjct: 250 RRLLERLAESQPKRTDSHRLFPL--DSAKTAIGTACKKVGLPHFGHHAMRHFFCSNAIEA 307

Query: 301 GATAHELMATYGWKTVD--QAETYTKGADRIRLGI 333
           G     +    G K      A+TY    +     +
Sbjct: 308 GCDFKVIAGWLGHKDGGVLVAQTYGHLRNEHSTAM 342


>gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425]
 gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425]
          Length = 373

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/340 (10%), Positives = 90/340 (26%), Gaps = 73/340 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR-------- 126
            Y +S      + N+  ++ ++        G  D D++++  +H+   +           
Sbjct: 33  RYLESV---GRSPNTIQAYLNHLKLFWEFLGGADLDWKQLKLEHLADFMTWLRRPDPRVI 89

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---------------- 163
                  K + ++    L+++   + +  R   +        +                 
Sbjct: 90  SLQPVEAKRSEATVNLVLSAVYGFYDFHERNGTIEGIELYRHQFQPGRKYKSFLHHVNKG 149

Query: 164 ---------PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
                     K   +  +   +E +++            L       +G+R   +     
Sbjct: 150 KETRIRLLKIKPPRKLPKTLDEEAVKRVIEACKRIRDKFLITLLH-ETGMRIGQALGLRH 208

Query: 215 QHLQNNIFSIKTQKTG--------TIITVELPDGFMKLLAMT--------------PIGK 252
           + + +    I+                         +L+ +                   
Sbjct: 209 EDVHSWDNEIQIVPRDDNINGARAKTRDTYKLHVSKELMGLYSAYVTTEYPEDIDSDYVF 268

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              +       ++ +     F+  +  A V  + H  R   AT     G     +    G
Sbjct: 269 VNIWEGMRGYPLSYSTVQALFRRLSRDAEVRVTPHMFRHTHATDLIRTGMQMSYVQKRLG 328

Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD---SDDP 348
             ++    +TY    +   +  +  + I S  D   S+DP
Sbjct: 329 HASIQTTIDTYVHVTNED-MKHEYQKYIESQKDVSTSEDP 367


>gi|167574310|ref|ZP_02367184.1| phage integrase family protein [Burkholderia oklahomensis C6786]
          Length = 359

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 96/335 (28%), Gaps = 30/335 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++  + G          G RIR      +      Y   L     +++ +    K   T 
Sbjct: 4   RKDKKSGIWHLDICPPSGARIRRSTETRDRKAAQEYHDRLKAELWRQDKL--GEKADRTF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---------RSG 122
           +     + +                 +      + G    R +T + I          +G
Sbjct: 62  EEAAVRFLQQCVGQ----RDYAGKLRHVLYWREQFGATPVRLLTAERIFDALPTHKMVNG 117

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R   P +  +++ ++R L    V  E++   P L       + +    W   ++   
Sbjct: 118 KPARPLAPGTRNRYINTIRRLLNLCVEWEWLGRTPKLRR---FEEPDVRVRWETPEVIMT 174

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R A    + +G+R S+     V  +    +N   +    K+     V L 
Sbjct: 175 MINALRLPWMRDAAIVAVATGMRESELFGLRVSQIDLAQRNAWITHAEAKSKRARAVPLN 234

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG-VNKSAHGVRK 291
              + +L              +  + +             F      AG V+   H +R 
Sbjct: 235 QDAISVLEQRMRTATDLVFTREYTRGDGPPKLIRQIDKRDFARACRVAGMVDFHWHDLRH 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             A+     G     L    GW+T+   + Y   A
Sbjct: 295 TWASWHVQRGTPLMVLKELGGWETIAMVQKYAHLA 329


>gi|74317826|ref|YP_315566.1| phage integrase family site specific recombinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057321|gb|AAZ97761.1| site-specific recombinase, phage integrase family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 352

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 102/357 (28%), Gaps = 45/357 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G++ +                       A+   +     +  +++    + TTL+ LI
Sbjct: 6   KRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTTLQDLI 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             YR          +    F      + +  G +    ++ K I    + R     + S+
Sbjct: 66  GRYRIEVLPNKRGKH----FGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSAST 121

Query: 133 AIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + +  +  L   A ++    +  NPC  V RP  K    R    E+ +   +   +  
Sbjct: 122 VKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARDRRLQPEEEKYLLTACEQ-- 179

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFM 242
              L   F L +  R  +        +      +  +               V L    +
Sbjct: 180 HVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAV 239

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-----------ATKAG--------VN 283
            +L                    +  FS  +                KAG        ++
Sbjct: 240 SVLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLID 299

Query: 284 KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              H +R  + +   + G   + E+ +  G KT+   + YT            ++++
Sbjct: 300 LRFHDLRHEATSRLFEKGVFDSMEVASITGHKTLAMLKRYTHL-----RAEDLAKKL 351


>gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386]
 gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386]
          Length = 263

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 85/257 (33%), Gaps = 15/257 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
             +I EY+ +      +  +  ++ +   + +    + +  +I  K I +  +  K  + 
Sbjct: 2   DKIIEEYKNTLQMKFFSQTTINAYMADIKKFLEFLPEKNL-EIIPKEIHNYRKYLKNNYK 60

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  + +T++   FK       +       +                   +    ++  
Sbjct: 61  VSTINRKVTTLNNFFKSLGIDVRLKAEKVHRMSIKDDFLTEREY-------KRLLKFAIN 113

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + R+    L ++G+R S+     V++L+  I  I  +  G I  + L    + +L    
Sbjct: 114 EKIRITMVVLAHTGIRVSELKYIHVENLKTGIVEI--ENKGKIRIIILSKNLINILKKYC 171

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
             +     +  +        S+   A   + G+ KS   AH  R   A            
Sbjct: 172 GERNIKSGSIIEVSRIYIHNSLKQSAANARGGLKKSKVHAHAFRHLFAVQFLKKNNNIAA 231

Query: 307 LMATYGWKTVDQAETYT 323
           L    G  +++    YT
Sbjct: 232 LADILGHSSLETTRIYT 248


>gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3]
 gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3]
          Length = 322

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 77/295 (26%), Gaps = 42/295 (14%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----------GDFDYRKITTKH--I 119
             L + YR       LA +SR ++ S     +R            G         +   +
Sbjct: 25  AELFAAYRAELDHVRLAEHSRRAYASRVAGFLRWLDTDGAAADPTGADPLSDAHARDFAV 84

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R          K  P++    LT++   F W      V               +  R  T
Sbjct: 85  RDYRAHLLTVAKKRPATINAHLTALDHFFTWRHLGRAVVDRA-------DLPEQAPRALT 137

Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------- 222
            ++ ++           + R   E L  +G+RC++     +  +                
Sbjct: 138 DDEARRVLRAAERLPSLRDRTIIELLYNTGVRCAELVALDLDDVPVTARTGAVHVRAGKG 197

Query: 223 -----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                                    +            F+N   ++++            
Sbjct: 198 RDGGKPRTIPANPRARRALTDWKPARAAWPNAEADPALFLNRYGRRLSTRTVDQVVADLG 257

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              G++  + H +R   AT     GA    +    G    D    YTK  +  RL
Sbjct: 258 RSVGIDDLTPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYTKPTEADRL 312


>gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217]
 gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217]
          Length = 319

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 73/303 (24%), Gaps = 50/303 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VES 125
           T    I   R        +  +  S+  +    IR         IT   I          
Sbjct: 5   TFLEAI---RTEIRVRHYSYQTEKSYLYWNRYFIRHCNIRHGADITPALIEQFLCFLAVE 61

Query: 126 RKHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRK------TEGIRPWTKE 177
            + + S+  Q L ++    +    +    +      + +R  +          I   +  
Sbjct: 62  CEVSASTQKQALCAIVFACRHVLKIEPNELQFPYAKAPKRIPQVLSNEEAKLIISNLSGY 121

Query: 178 DM----------------------------QQFKSFWSEGSQPRLAFEFL-----LYSGL 204
                                         +    +  +G + R+          L S +
Sbjct: 122 HYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQKDRVCMLPNGLIDVLKSQM 181

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           +               + S+         +      +  +   +            +  +
Sbjct: 182 KQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYIFPASRRCMHPSDNYVCRHHI 241

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + T FS   +   T  G++K  +AH  R   AT     G     +    G   V   E Y
Sbjct: 242 HPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIY 301

Query: 323 TKG 325
           T  
Sbjct: 302 THV 304


>gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520]
          Length = 337

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGRSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|309776099|ref|ZP_07671090.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916050|gb|EFP61799.1| site-specific recombinase, phage integrase family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 352

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 94/312 (30%), Gaps = 23/312 (7%)

Query: 18  HGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            G  +YY  +  G    +R  L +            AL          N   +   T   
Sbjct: 24  RGASVYYIDEETGELKEKRKSLGFFSTRK------EALHALEKYHRERNLLSRDDATFAE 77

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +   + +   + ++  ++  ++E  FD +          ++    ++  ++       + 
Sbjct: 78  IYERWWQE-KFPTVRESTVYTYEHAFD-LCGALHKRLISELRLSDLQEIIDKSNKNYPTL 135

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190
                 M  +F +AV+ + V  N    V+  + K +      ++     +      +   
Sbjct: 136 KTMKILMIQVFNYAVKYDLVLKNYATYVDIGRYKNKNPNKMERDKFSHEQVKSLWNTVEC 195

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +       LLY+G+R S+       ++         +++ T   +       K+L     
Sbjct: 196 KYDYISLMLLYTGVRISELLNLEKVNVHLYEQYFFVKESKTDNGIRKVPIHDKILPFFEE 255

Query: 251 GKETFFINNDKQKMNAT--------QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
              +   +      +              ++K   TK  +  + H  R    ++ ++ G 
Sbjct: 256 WYNSSPEDYKYLLYDKEFTKLTYIEYVRKYYKPLMTKLDITLTPHCCRHTCISMMSEKGV 315

Query: 303 TAHELMATYGWK 314
               +    G  
Sbjct: 316 DPTYIKLIVGHS 327


>gi|75812471|ref|YP_320090.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705227|gb|ABA24901.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 31/281 (11%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----------RSGVESRKH 128
            +     +LA NSR  +E    + +       Y +++ +H+                +  
Sbjct: 49  LEFLRSTNLAPNSRKLYERELKRFLA-WTQLHYHELSPRHLGLYKEYLRDEVKTDAGKPL 107

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + +S    + +++  F W        +  NP L ++  K      +  T E M++  S  
Sbjct: 108 SKASINAGVAALKSFFNWMCYTYPEIIVTNPTLGIKLEKVPLPPAQSLTDEQMERVWSAL 167

Query: 187 SEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               + +    A   +L  GLR  +  +  V      +  +   KT     V L      
Sbjct: 168 ELLGETKGRDTALVHILSHGLRAGEIVQLNVGSFDGKLLFLPDTKTNEPRLVPLRKESRD 227

Query: 244 LLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +L                      +   +    +++        +     AG+ +   H 
Sbjct: 228 VLEAYLRSRREQGEELNSLTPLMISHHASYKGDRLSYHGIYFAVEKIGELAGIEDLHPHQ 287

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT     G          G ++      YT  +++ 
Sbjct: 288 FRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQE 328


>gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4]
 gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6]
 gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16]
 gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23]
 gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC
           43183]
 gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4]
 gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6]
 gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16]
 gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
 gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23]
 gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R]
 gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 89/297 (29%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + +   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -QRKKTDYLGRVKLLPEAVALIEKYRDDTRETLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +   +     ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKK--LFEDMDRFVE 400


>gi|302023189|ref|ZP_07248400.1| integrase [Streptococcus suis 05HAS68]
          Length = 359

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 98/353 (27%), Gaps = 49/353 (13%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G         F     +RIR+      T   A    L       E          
Sbjct: 4   KKAKNGTWTVDISDGFHPVTQKRIRIIRKGFKTKKEA--LELEQYIRVVELKEKRFDFLV 61

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L     +     +  ++   +  + +   I     + +  K++ +HI    E  K 
Sbjct: 62  TTDMLFDILEEEDQQNNRKISYISTQRNNYERHIKPYFLNTNLNKLSYEHIFEFREHLKT 121

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      + ++  + +  ++ +F   VR+  +  NP  ++ +       I+ W+ E
Sbjct: 122 KSKKQNDSVTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENLRKLPISKPTIKFWSVE 181

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------HLQNN 220
           +  +F+   +       L F    ++G+R  +                        +   
Sbjct: 182 EFNEFRKLITSDEISYNLFFTIAFFTGMRLGEILALNWYDINLITNTIHITKTAYFVHGT 241

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQ 268
                T+       + +     ++L      +                I +    +    
Sbjct: 242 NHINSTKTRAGTRHITINHKLARMLGDWKEKQSDLLKEFTTDTESLQVIQSTPLPITKNM 301

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               FK    +         H +R   A++  + G     +    G  ++   
Sbjct: 302 IDKKFKQILARNNYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTT 354


>gi|319937079|ref|ZP_08011488.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
 gi|319807857|gb|EFW04442.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1]
          Length = 383

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 91/370 (24%), Gaps = 49/370 (13%)

Query: 16  TRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            ++G        ++   G   R       TF  A              I   +    T  
Sbjct: 9   KKYGNTFQVDIRYKNTLGISKRHIKSGFKTFNEAKKYERDFKEQLEVLIEQGKSTNKTFN 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
            +  EY +       A ++++ +  ++   +    G+ +   +   +++           
Sbjct: 69  DIYYEYMEIEGEVKYARSTKVYYNVTHEMYVKDTIGNENMGSLKYMNLQQFFNKMSEKYN 128

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------------- 176
           P +         V FK+A+R  Y+  NP   ++ PK + E                    
Sbjct: 129 PPTLKNIKKLFAVTFKYALRVGYIRENPIPYIQIPKLQNERRVKVEIISDENLSKIIDAL 188

Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224
                       K+         +A     Y+GLR S++     Q        +      
Sbjct: 189 QTVKRTNPYSSGKNAEFTFKSYAMALIIGRYTGLRISETLALKRQDFDLENCCMTVRRKI 248

Query: 225 ----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQ 268
                      T         +      KLL                             
Sbjct: 249 EYSGLKAKDIHTTHQLKSAKSKGTVEISKLLCSYLKKWFEINPFEFVICDGKGNFIKPET 308

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            +   +    +  +N   H +R   AT    +G     +        +      YT   +
Sbjct: 309 LNHRLREVCKELNINFHYHMLRHTYATELVMSGVNPVVVKDLMRHSDISTTWSIYTHPQN 368

Query: 328 R-IRLGIKNS 336
              R  + N 
Sbjct: 369 EDQRKALDNL 378


>gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
 gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 73/254 (28%), Gaps = 6/254 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  YR        + ++   +        +   +          +       K+  SSA 
Sbjct: 11  MEAYRIYLMESEKSPSTIEKYLRDIRNFYQFLPEEKIIDREAVLLYKRQLIPKYQISSAN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++     +   +E + +             E      +      ++     S+  L
Sbjct: 71  SMIIAVNGFLSFMGLEE-LRVKVFKFQRAMVSDPEREIQREEYIRLVEEAERMGKSRLSL 129

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             + L  +G+R S+      + + +   ++  +    ++ +         +        +
Sbjct: 130 ILQTLGATGIRISELVCITREAVSSGRAAVNLKGKTRVVILPKRLREKMEIYCRENQIYS 189

Query: 255 FFINNDK--QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
             +   +  + ++ +      K     AG+N+     H +R   A I          L  
Sbjct: 190 GPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARIYYKNNHDIVYLAD 249

Query: 310 TYGWKTVDQAETYT 323
             G  +V+    YT
Sbjct: 250 ILGHSSVETTRIYT 263


>gi|295102867|emb|CBL00412.1| Phage integrase family [Faecalibacterium prausnitzii L2-6]
          Length = 344

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 82/324 (25%), Gaps = 23/324 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHG-----------RRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           + + + + G   Y  R   G           + +  P          ++        ++ 
Sbjct: 4   IIERKKKDGTFSYMIRVYSGRTRDDKVITKCKTVTPPTGMGKKKTEKWVQEQAILFEQKV 63

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                      L  LI  + +      L   +   ++    +I    G     KI    I
Sbjct: 64  TNGLVLDSDVLLDALIDRWFEEYANKRLKPKTVYDYKRMRPRISAGLGHLKVSKIKPAQI 123

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +  ++ +          T+   L K         +     +                 M
Sbjct: 124 MAFYDNLEEKGIRRDSTYTATPALLKLLPHGTRGVLAKKAGIG-----------LDTMRM 172

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                  S  +  +++    L       +  + G +   N+I       +          
Sbjct: 173 VYAGRKVSRQTAEKVSATVGLAFSKVFVEHRQKGGKLNNNSILHYHAMLSSVFKIGSAWV 232

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
             + L     +  +  F   D + M+    S WF    T+ G+ +   H +R  +A+I  
Sbjct: 233 RKVTLENGKVVDNDMLFTKWDGEPMDPDIISTWFPKFLTEHGLPQVHFHSLRHTNASILI 292

Query: 299 DAGATAHELMATYGWKTVDQAETY 322
            A           G         Y
Sbjct: 293 AAHTPITTASGRLGHAQTSTTLNY 316


>gi|293380464|ref|ZP_06626531.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|290922971|gb|EFD99906.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
          Length = 370

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/351 (8%), Positives = 85/351 (24%), Gaps = 36/351 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R  K        + +  R     +     +            +  N    +        
Sbjct: 6   KRGTKWRAQVSWYNSQGKRQFKTKQGFLTKSAARKWANEMEVAKDDNQISNQDPIFAEYF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSA 133
             + ++         ++  ++  +  +    G     K+T    +  +     +    + 
Sbjct: 66  KNWYETYKTPGTTNGTKKRYKRIYKLLTEYFGKTKLSKVTRYRYQEFMNQYGKSHVKGTV 125

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWS 187
            +   S+    + A+ +  +  N    +          +       Q             
Sbjct: 126 YKTNGSINSSIRDALAEGLIRTNFAERINLTWNDERTRKIDYLNFNQVQQLKKSLLGGIK 185

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------- 230
                R     ++Y+G+R  +        L     +I   K+                  
Sbjct: 186 PSYISRYMLLTIIYTGMRPGEIRVLTWHDLNFEDHTIHISKSWDYDNNKIFDYDSDEINK 245

Query: 231 ------TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN 283
                 +   +++    + +L             +   K   ++  +   + +  K  +N
Sbjct: 246 ETKNRSSTRVIKVDQHLLDILTQLRPNNHERLFIDPDGKIPTSSAVNKVLRKQLKKLNIN 305

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           K     H +R     +    G   + +    G   +     TY    D ++
Sbjct: 306 KKNFHFHSLRHTHVAMLLFKGVNLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 340

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 81/311 (26%), Gaps = 59/311 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
           K L+ +  +S      ++ +  ++  +  + I   G    +++  + + + +       +
Sbjct: 22  KRLLDQLSESIRLKHYSIRTEQAYRGWVRRFILFHGKRHPQEMGAREVETFLTHLAVEGR 81

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + S+  Q  +++  L+K  +R +   ++   S +            T E++Q+      
Sbjct: 82  VSASTQNQAKSALLFLYKEVLRTDLPWLDDVESAKS---GKRLPVVLTPEEVQRLLG--P 136

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------------- 222
                 L    L  +G+R  +  R  V+ +                              
Sbjct: 137 IEGTTGLILRLLYGTGMRIMECLRLRVKDVDFARREILVREGKGFKDRVTMLPEKLMAPL 196

Query: 223 ----------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                                  +                +  +        +       
Sbjct: 197 GEHLARVKALHAADLSAGFGDVYLPWALERKYPNAAREWAWQYVFVAARRPVDPRSGAVR 256

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY-GWKTVD 317
           +  + A             AGV    + H +R   AT   + G     +     G   V 
Sbjct: 257 RHHVEAQSIQRAMHQALRVAGVSKPATPHTLRHSFATSLLETGYDIRTVQELLVGHSDVS 316

Query: 318 QAETYTKGADR 328
               YT    R
Sbjct: 317 TTMIYTHVLKR 327


>gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 320

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 26/280 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSG 122
           +    T++ +  +Y            +  S E +  ++ I   + D + +++T + I   
Sbjct: 11  KTTNKTVEEIYEDYLNYCTSIGQREKTIESKEKFGKYELIKVVNLDSNIKQLTKEKIEKH 70

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +    +  ++   ++  MR    +     Y+        + P    E    +T+E++
Sbjct: 71  IINMRKEGYKGNTYQTYVIKMRAFLSYCFNNNYLTKFMV---KIPNILLEKKEVYTEEEV 127

Query: 180 QQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGT 231
            +     +  +      +      FLL +G R        V+ +  +  S   +  KT  
Sbjct: 128 IKLLKKPNINTCLVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTNSILFRHMKTKK 187

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNKSA 286
            ITV L +     L            +         KM         K       V    
Sbjct: 188 QITVPLSNTLKVNLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVK--F 245

Query: 287 HG---VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           HG    R   AT++   GA  + +    G   +   E Y 
Sbjct: 246 HGVNTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERYI 285


>gi|157159726|ref|YP_001457044.1| phage integrase family site specific recombinase [Escherichia coli
           HS]
 gi|218550049|ref|YP_002383840.1| Integrase from phage origin [Escherichia fergusonii ATCC 35469]
 gi|157065406|gb|ABV04661.1| site-specific recombinase, phage integrase family [Escherichia coli
           HS]
 gi|218357590|emb|CAQ90229.1| Integrase from phage origin [Escherichia fergusonii ATCC 35469]
          Length = 386

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|88703807|ref|ZP_01101522.1| prophage integrase [Congregibacter litoralis KT71]
 gi|88701634|gb|EAQ98738.1| prophage integrase [Congregibacter litoralis KT71]
          Length = 399

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 77/302 (25%), Gaps = 33/302 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
                  + I     K  T K    ++ +         +   + E      +I   G   
Sbjct: 67  ARFADHDKQIEQRSAKTPTFKAFADQWMEENRI-GWKPSYINTLEHSLSKHVIPAFGSVP 125

Query: 111 YRKITTKHIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              I+ + I +        P                +  +R + + A  +     NP   
Sbjct: 126 MSAISKEDILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQVMREASERFG-FDNPYQG 184

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  K     + P+T ++++       E            ++G+R  +      +++   
Sbjct: 185 IKLLKVPRTKVEPFTLDEVKAVLDGVREDFHAY--MTVRFFTGMRTGEIHGLKWKYIDFK 242

Query: 221 IFSIKTQKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
              I  +++             +   + + D     L           +           
Sbjct: 243 QRMILVRESFVAGAMTDTKTEESARDIPMSDEVYAALQAQYKRTGKLDLVFCSGSGEPLS 302

Query: 269 FSIWFKA----KATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +   K           + K   +  R  +AT+   AG     +    G        + Y
Sbjct: 303 INNVCKRVWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQMLGHSDSAITHKRY 362

Query: 323 TK 324
            +
Sbjct: 363 AR 364


>gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
 gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium
           saburreum DSM 3986]
          Length = 351

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 100/325 (30%), Gaps = 57/325 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------GDFDYR---K 113
           L     ++ +     + +  ++I++       +                  D        
Sbjct: 25  LPAFFKDFFRGIEPRTQS-RTQIAYAYDIKVFLEFLLNENPSIKNTYSKITDIPLSVLEN 83

Query: 114 ITTKHIRSGVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           ++   I   +E  K+  S          +  + +++++ +FK+  R E +  N    V+ 
Sbjct: 84  LSVTDIEEFMEYLKYRESEGKKISNKENAIKRKVSTLKSVFKYFYRVEKINENIMERVQL 143

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFL-----------LYSGLRCSD 208
           PK  ++ I     +++        +G     + +   E             L +G+R S+
Sbjct: 144 PKLHSKEIIRLDIDEVAMMIDEAEKGEGLSDRQKAYHEKTKVRDVALLSLLLGTGIRVSE 203

Query: 209 SCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPI----------GKETFFI 257
                +  +      I   +K G  +TV   D   + L                +  FF+
Sbjct: 204 CVGLDISDVDFKNNGILIHRKGGKEVTVYFSDEVSEALQNYLDERVLILEESGHEGAFFL 263

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +   ++M+        K  A         + H +R    T         + +    G   
Sbjct: 264 SMQNKRMSVRSVENLVKKYARIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLGHSD 323

Query: 316 VDQA-ETYTKGADRIRLGIKNSRRI 339
           V+   + Y    D  R   +N+ ++
Sbjct: 324 VNTTKKHYAAIEDDRRKSARNAVKL 348


>gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 428

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 83/278 (29%), Gaps = 24/278 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ ++ ++A   + +  +  ++ S+  +++  +       I ++ + + ++ +    +  
Sbjct: 136 ILEDFFRAARERNFSFCTTKTYYSHLYRLLLFTEKLPI-NINSRDLENYLDFQVKEKTVK 194

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +   R  F +  R     +      +            + E+ +          + +
Sbjct: 195 SATIRGARQAFIFYFRDVRQQMKHLKFPKIKSDVK-LPEVLSAEETRA-IFNSLPNIKHK 252

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIG 251
           +       +GLR S+      + +      I+  +          L +  +  L      
Sbjct: 253 MLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYLKI 312

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN------------------KSAHGVRKFS 293
           +E   +             ++  A      +                    + H +R   
Sbjct: 313 REYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAF 372

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           AT   + G     +    G  +V   + YTK A R RL
Sbjct: 373 ATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVA-RSRL 409


>gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 349

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 92/337 (27%), Gaps = 43/337 (12%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK +   Y     GRRIR    +      A+ +        + ++     +   L 
Sbjct: 5   KQKNGKWLCELYPNGREGRRIR-RQFNTKGEAEAFEAFTKSENDDKPWLGKKEDRRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            +I  +        +A  SR++       +    GD    ++T K      + R      
Sbjct: 63  EIIQLWHNLHGQALVASKSRLAK---LQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEID 119

Query: 129 ------------TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175
                        P +  +    +  +F    R  E+   NP   +   K   + +   T
Sbjct: 120 NGYHKDPAKWIAKPITVNREQQYLEAVFNELRRLGEWSLPNPLDGIRVFKEAEKEMSWLT 179

Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              + +      +  +  L    +  L +G R  ++ R     L  +  +    K     
Sbjct: 180 LSQLPELFRACKQYGKEDLTMIVKVCLATGARWGEAERLTRPQLSPHKLTFTKTKGKKNR 239

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGV 289
           TV +P      L+                          FK       +  +     H +
Sbjct: 240 TVPIPKWLYDELSERQGRMFKPCYQE-------------FKKMLKLTNIELTEGQKTHVL 286

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           R          G     L    G   + +   Y   A
Sbjct: 287 RHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFA 323


>gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii]
          Length = 317

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 39/281 (13%)

Query: 93  ISFE---SYFDQIIRK-----SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
            S+    S   + +               +  K I++      + R ++ ++  Q L+++
Sbjct: 2   ASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDRGNSVNTRNQRLSAI 61

Query: 141 RVLFKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193
              F++ +    +  +     L+++  KR++  +   + E ++            G +  
Sbjct: 62  TSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAVELLLQQPNARKPMGRRDL 121

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIG 251
           +    L  +G R  +     V  L+    +      K   +  V L      LL      
Sbjct: 122 VLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTALLVSYLQE 181

Query: 252 KETFF---------INNDKQKMNATQFSIWFKAKATK--------AGVNKSAHGVRKFSA 294
               +          NN ++++     S   +  A +         G   S H +R   A
Sbjct: 182 HHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVSQGNPGLLGTKISPHTLRHSKA 241

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
                AG     +    G   +   E Y +   D  +  ++
Sbjct: 242 MHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALE 282


>gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes]
 gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes]
          Length = 338

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 82/319 (25%), Gaps = 42/319 (13%)

Query: 71  LKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK----SGDFD----YRKITTKHIR 120
           L  LI  +          ++ N+  S+   F  +        G        R +    I 
Sbjct: 12  LAVLIERWFTDRLMKHRGVSSNTIASYRDTFRLLFAFAQARLGRSPSQLTLRDLDAPFIG 71

Query: 121 SGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +E     R  +  +    LT++R  F++A  +E         V     K    R    
Sbjct: 72  AFLEVLETQRAASVRTRNLRLTAIRSFFRYAAFEEPAHSAHIQRVLAIPSKRCDKRQLQF 131

Query: 177 EDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-- 227
                              G +          +GLR S+        +     +      
Sbjct: 132 LTRPEIESILDCTDRSTWLGRRDYTLLLLAAQTGLRVSEVIDLDRDSVMLGRGAHVQCVG 191

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGV 282
           K     +  L     + L               F N    +++A        A   +A  
Sbjct: 192 KGRKERSTPLTKVAQEALRRWLKEPGKRGATALFPNMHGGRLSADGVQALVFAAVYRARE 251

Query: 283 NK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG------ADR 328
           +         S H +R  +A     AG     +    G + ++   TY         +  
Sbjct: 252 HCVSLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAHLELKESTL 311

Query: 329 IRLGIKNSRRISSVVDSDD 347
            +L      +      +D 
Sbjct: 312 AKLKPYERAKAERFRPNDR 330


>gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482]
 gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 412

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 76/257 (29%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           D   ++IT   I       + T              
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGYNTTAKFMQF 190

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       T+++++          +    R  F 
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEQVRDVFI 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  +SGL   D       +++ +        T    T    +  +  +    + K    +
Sbjct: 251 FSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILEKYKGKL 310

Query: 258 NNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            N K    ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 311 PNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLG 370

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 371 HTNIETTQIYARITNNK 387


>gi|125625278|ref|YP_001033761.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124494086|emb|CAL99087.1| putative integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300072088|gb|ADJ61488.1| putative integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 392

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 108/393 (27%), Gaps = 60/393 (15%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R     +S  +        +       + I
Sbjct: 2   NIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQTI 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              +    + + L   + +S     +  NS     +     I+ + G +   +I    ++
Sbjct: 62  ARKKVSFDSFESLTLSWFESYKLT-VKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQ 120

Query: 121 SGVESRKHTPSSAI---------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           + V       ++A                  L  ++ +  + ++   +  NP   V  PK
Sbjct: 121 TIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILDYGIQLGAIEENPATKVFPPK 180

Query: 166 RKTEGIRPWTKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            K   +      D                     +    + FLL +GLR  ++       
Sbjct: 181 LKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD 240

Query: 217 LQNNIF--------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           +                       +   +   + L +  +K+L      +    +     
Sbjct: 241 IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDS 300

Query: 263 K---MNATQFSIW-----FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
                N   ++        K    +A V     HG R   A++  +      E+    G 
Sbjct: 301 PIFSYNGKTYTYINEVTQLKKHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGH 360

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345
                   TY+  +       + + +   ++ +
Sbjct: 361 ADYAITMNTYSHLSKSKE--KETAEKFGDILKA 391


>gi|328945083|gb|EGG39238.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK1087]
          Length = 421

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 108/371 (29%), Gaps = 68/371 (18%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWG 85
             G+++        T      + +       +  ++  K     TL+ L  E+ KS    
Sbjct: 37  KTGKQVTT-TITAKTLKQLDRAIIQARLEFEKNGSTREKVIIIDTLEDLAEEWFKSYKTW 95

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT-------------PS 131
             + N+      Y  + II K GD+   KI +  I+  +                     
Sbjct: 96  VNSHNTLNRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNDLAKKSKESIESGVKRADKG 155

Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KEDM 179
           SA      +  ++ +F + +    +  NP +SV+ P +     +              + 
Sbjct: 156 SAKDFGAVIHKLKDIFDYGITNYGLITNPVVSVKIPPKPKSNKQRIMVLHDDSLVVWLNY 215

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------ 221
            +         + +L    LL S LR ++     +  L                      
Sbjct: 216 LESLDNTRANRRFKLICNTLLASALRINELLALTIDDLDFENSSINVSKTLMWKTANKKD 275

Query: 222 -------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----------- 263
                       +      +V +P   ++ L         +   +++ +           
Sbjct: 276 GTKGEVICKATPKTDAGNRSVPVPLPIIEKLIDFHNEMNKYLELHNRHRTRLIFPTIYGN 335

Query: 264 -MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            M         K +    G+     H  R   A++  +AG    EL    G K++     
Sbjct: 336 YMCDRNERTTLKKRLVGLGLPNYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMD 395

Query: 321 TYTKGADRIRL 331
           TY + A + +L
Sbjct: 396 TYAELAPQRKL 406


>gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +       +      G     +++   + S    
Sbjct: 19  QTLRQLTESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRW 78

Query: 126 RKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +            +S +  LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EDETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKAT 278
           G    V +    +  L                              + T  ++  +A   
Sbjct: 199 GKERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRD 258

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|110804320|ref|YP_687840.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|110613868|gb|ABF02535.1| putative integrase [Shigella flexneri 5 str. 8401]
 gi|281599655|gb|ADA72639.1| Site-specific recombinase, phage integrase family [Shigella
           flexneri 2002017]
          Length = 386

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFREAILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGNPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343]
 gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343]
          Length = 412

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 76/257 (29%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           D   ++IT   I       + T              
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       T+++++          +    R  F 
Sbjct: 191 FKRIILIARNNGILIGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEQVRDVFI 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  +SGL   D       +++ +        T    T    +  +  +    + K    +
Sbjct: 251 FSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNIDVNVPLLDIPKMILEKYKGKL 310

Query: 258 NNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            N K    ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 311 PNGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLG 370

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 371 HTNIETTQIYARITNNK 387


>gi|126700945|ref|YP_001089842.1| integrase [Clostridium difficile 630]
 gi|115252382|emb|CAJ70223.1| Integrase, lambdoid phage family Tn916-like,CTn6-Orf1 [Clostridium
           difficile]
          Length = 394

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 101/337 (29%), Gaps = 37/337 (10%)

Query: 18  HGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G   +     F    G++I+       T   A   A +          + +K+  + + 
Sbjct: 11  NGTYYFRANLGFHPITGKQIQKYKSGFKTKKEA-REAYSKLMLTSTEELTEKKQQLSFQQ 69

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
            I E Y        +  ++ ++  S   +           +I   ++++         +P
Sbjct: 70  FIEETYLPWYK-TQVKESTYLNRRSTIQKHFSYFYKMTVDEIEPINVQNWQLELAKEFSP 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +        + + F  AV       NP   +   K K   +  WT ++ Q+  S   +G 
Sbjct: 129 NYIRIVQGMLSIAFDRAVVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLYKGD 188

Query: 191 QPRLAFEFLLY----SGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKT 229
                     +    +G+R  ++       +                  +    ++ +  
Sbjct: 189 YYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTMDEYKFVEPKTQ 248

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVN 283
            +I T+ +    +K L      ++    +       +    +        +  A  AGV+
Sbjct: 249 ASIRTIYIDTDTIKELKAWQEVQQKVLKDCDLVLSYNGIPTSKHTLPRALEKLAGLAGVH 308

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   H +R   A++    G     +    G + +   
Sbjct: 309 RIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842]
          Length = 397

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 100/378 (26%), Gaps = 54/378 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           +S        ++ ++      
Sbjct: 24  RYAYKYVDTFGKPQFVYSWK-----LVPTDKTPAGKREDISLREKEKEIQKDLDDGIDTI 78

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++  N+++  E     +   + G      +     +      
Sbjct: 79  GKKMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRM 138

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A+  + +  NP      +     TE   P T    + 
Sbjct: 139 KEKGLSYKTINNDKRSLKAAFYTAILDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEES 198

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCR-------AGVQHLQNNIFSIKTQKTGT 231
           F SF        +   A   LL +GLR S+ C           + +  +   ++    G 
Sbjct: 199 FLSFIQGDKVYQKHYDAIVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGY 258

Query: 232 IITVELPDGFMKLLAMTPIGKETFFI----------------------NNDKQKMNATQF 269
            I        ++ + M     + F                          +   M A  +
Sbjct: 259 YIDEPKTQSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDY 318

Query: 270 SIWFKAKATKAG------VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F     K        + K+   H +R    T  A+AG     L    G   +     
Sbjct: 319 GGMFGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLN 378

Query: 322 YTKGA--DRIRLGIKNSR 337
           Y   A  D  R  ++   
Sbjct: 379 YYAHATFDSARAEMERLA 396


>gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 462

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 81/309 (26%), Gaps = 58/309 (18%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKH 128
            L   + ++     LA+++  ++ ++  + I               ++  +      R  
Sbjct: 147 ALFEAFSETVTSRGLAISTEKTYLAWTCRFIVFLQSKPVESADEADVQQFLSQLVTQRNV 206

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             S+  Q L ++   F++ +++    +      +RP          ++ +++   S    
Sbjct: 207 AASTQSQALNALVFFFRYVLQRPLGELQAIERSKRP---RRLPVVLSRNEVKALLSEMH- 262

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------------------ 224
                L    L  SG+R  ++ R  V+ +     +I                        
Sbjct: 263 -GVHHLLASLLYGSGMRVMEALRLRVKDIDFERRAITVRSGKGDKDRVVPLPESTIAPLQ 321

Query: 225 -----------------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                                                  +  +     +  +       +
Sbjct: 322 NHLRQVKAIHEGDLADGYGEASLPHALARKYRNAGKEWHWQYVFPSARVAVDPRSGAIRR 381

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K     + + K  S H +R   AT   + G     +    G   V   
Sbjct: 382 HHLHETAVQRAVKRAVRASRIPKQASCHTLRHSFATHLLERGQDIRTVQELLGHADVSTT 441

Query: 320 ETYTKGADR 328
             YT    +
Sbjct: 442 MIYTHVMSK 450


>gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 431

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 74/275 (26%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + ++  G  D     IT           + R    S+    L  +  L   AV   
Sbjct: 136 RNLREFVKDKGLQDIPISTITESLFEEYRFFLKKRGLKASTVNTNLCWLSRLMFRAVSSR 195

Query: 152 YVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  NP  + E  K + +    +      +   +    E    RL F F  ++G+  +D 
Sbjct: 196 IIRCNPFENAEYEKEEKKIRFLQKGDVMKLMAMRMNDREAELARLMFVFSCFTGMAIADM 255

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFINN------ 259
                +H+Q      +  +     T            + +      +             
Sbjct: 256 ENLEYRHIQTAADGQRYIRKERQKTKVEFVVPLHPIAEAIINYYRKELAGNEEQQAVKEK 315

Query: 260 -----DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYG 312
                 +   + +             G+ +    H  R    T+S  AG     +    G
Sbjct: 316 GDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSYHVARHTFGTMSLSAGIPIESIAKMMG 375

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D          R+ +   + D
Sbjct: 376 HASISSTQIYAQVTDNKISKD--MDRLIAKQSAKD 408


>gi|291561396|emb|CBL40195.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 394

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 100/337 (29%), Gaps = 37/337 (10%)

Query: 18  HGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G   +     F    G++I+       T   A   A +          + +K+  + + 
Sbjct: 11  NGTYYFRANLGFHPITGKQIQKYKSGFKTKKEA-REAYSKLMLTSTEELTEKKQQLSFQQ 69

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
            I E Y        +  ++ ++  S   +           +I   ++++         +P
Sbjct: 70  FIEETYLPWYK-TQVKESTYLNRRSTIQKHFSYFYKMTVDEIEPINVQNWQLELAKEFSP 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +        + + F  AV       NP   +   K K   +  WT ++ Q+  S   +G 
Sbjct: 129 NYIRIVQGMLSIAFDRAVVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLYKGD 188

Query: 191 QPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKT 229
                     +    +G+R  ++       +                       ++ +  
Sbjct: 189 YYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTIDEYKFVEPKTQ 248

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVN 283
            +I T+ +    +K L      ++    +       +    +        +  A  AGV+
Sbjct: 249 ASIRTIYIDTDTIKELKAWQEVQQKVLKDCDLVLSYNGIPTSKHTLPRALEKLAGLAGVH 308

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   H +R   A++    G     +    G + +   
Sbjct: 309 RIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|254466302|ref|ZP_05079713.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
 gi|206687210|gb|EDZ47692.1| site-specific recombinase, phage integrase family protein
           [Rhodobacterales bacterium Y4I]
          Length = 367

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 84/347 (24%), Gaps = 36/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + K     G + +        G+R    +P        Y+  +        Y+       
Sbjct: 4   IRKRTLPSGLVRWQVDFTDQAGKRRSKLFPRRKD-ADVYLVKVRSLVANHTYLADSES-- 60

Query: 69  TTLKWLISEYRKSAHWG-----SLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHI 119
            T+      +             +  ++   +      +        GD    ++T +H+
Sbjct: 61  ITVAEAAQSWLDHCEVRCKTGRRMERSTLRGYSDYVRLHIKNAEIGIGDRLIAQLTRRHV 120

Query: 120 RSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +       S     + ++ ++++   A+    +  N    V   K      +    
Sbjct: 121 NEFRDRLLLNGRSEHLTRRAISVLKLILDHAIDNGQLFTNAAHGVRIIKSSRIDHKAPVP 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------NIFS 223
                     +     +         GLR S+      Q +                   
Sbjct: 181 SKEMIRALIEAADEDFKPHLIVSALGGLRASELRGLRWQDVDFDKGFIYIRQRADAYNKM 240

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKAT 278
            + +       +      +  L    +      +                    F+    
Sbjct: 241 GEPKSRAGYRDIPAGPMVLNALRRWKLRCPKSDLGLVFPAPRGGILQHTNTQARFRKLQE 300

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           K  V    H +R F+ ++  + G +  E+M   G  ++      Y  
Sbjct: 301 KVEVTMRWHDLRHFAVSLWIEQGFSIKEIMTFAGHSSIQMTMERYGH 347


>gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
 gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702]
          Length = 398

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 108/371 (29%), Gaps = 59/371 (15%)

Query: 17  RHGKIIYYFRKGHGRRIR-----LPYPHES---TFIPAYMSALTGSTPKREYINSPRKKP 68
           + G++    +     + +     L  P  +       AY   +           +  KKP
Sbjct: 14  KKGRLYAVIQVRENGKTKPVWRALGLPESANKSKVNKAYREVVQAFEQSYAEQIAQNKKP 73

Query: 69  TT---LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS---GDFDYRKITTKHIRS 121
            +   +   +  Y K     ++  ++  S+    + +I R      D     IT K I  
Sbjct: 74  ASDIPIYDYMCAYYKKIE-KNIQKSTAESYRGMINGRIRRYFTARKDLTVGSITAKDIED 132

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             +    +   A     + T +   FK A +   +  NP   ++RPK+       +++E+
Sbjct: 133 FYDWMFESHVVANTVIHYHTVLHSAFKRAFKDGLIESNPFDRIDRPKKNKFTGDNYSEEE 192

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------- 224
           +         G     A       GLR S++  A    +     +I              
Sbjct: 193 LIAMLGL-IRGDIIYPAVMLAGGLGLRRSEALGARWSRVDWEKKTILLDTKIIEYKENGK 251

Query: 225 -------KTQKTGTIITVELPDGFMKLLA----------------MTPIGKETFFINNDK 261
                  + +   +  T+ LPD   ++L                       +   ++   
Sbjct: 252 VIVEPVEEMKNKSSRRTLPLPDPVYEMLCEEREKQDLYRRMFKGSYNRKYDDYICVDQLG 311

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +   + +  F     + G+ K   H +R   A+I  +       +    G   +    
Sbjct: 312 GLIRPNRVTQRFADLIRQYGLRKIRFHDLRHTFASILINQDVPLLNVSTFLGHSDLSTTA 371

Query: 321 -TYTKGADRIR 330
             Y       +
Sbjct: 372 NIYAHLDKSKK 382


>gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           M    F    K +AT AG+ KS   H +R   AT   + GA    +    G   +   + 
Sbjct: 70  MTRQTFWHRIKHQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 129

Query: 322 YTKGADRIRL 331
           YT  A R RL
Sbjct: 130 YTHLA-RARL 138


>gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 78/264 (29%), Gaps = 19/264 (7%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I +K    D    ++T + I        + +     ++  +
Sbjct: 129 RAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQSFVVDDKGLAIETSRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191
           L  ++ + + A ++ Y           P+ K +  +  ++E  ++ +       +     
Sbjct: 189 LAIIKKVCRRAYKEGYADRCFFAHFSLPQPKEKTPKALSRESFEKIRDLVIPEHRSSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--- 248
            R  F F  Y+G   +D+      +L  +       K             +KLL      
Sbjct: 249 ARDFFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKY--RRKKNELHACVKLLPEALAL 306

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAH 305
                          ++        K  A  A +  + + H  R   A++   +AG    
Sbjct: 307 IEKYRDDDRQTLFPMLHYPNMRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIE 366

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y K   + 
Sbjct: 367 TICKMLGHSNLQTTQVYAKVTPKK 390


>gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251]
 gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251]
          Length = 320

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 84/310 (27%), Gaps = 57/310 (18%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127
           K L+   R    +   ++++  ++  +    I          +  K I   +       K
Sbjct: 3   KKLLDIVRDKIRFKHYSISTEKTYVFWIKHYIFYHQKQHPVNLGKKEIEDFLTFLAVTKK 62

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P++  Q  +++  LF +    +       +   R +++       TK+++Q       
Sbjct: 63  VSPTTQNQAFSAL--LFLYREVLDIEISTWNVQALRAQQRKHIPVVLTKDEVQNIILNM- 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------- 231
                +L  + +   GLR S+     ++ +      I      +                
Sbjct: 120 -NGIYQLMVKLMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKSLKDRTLPLPMKIKDEL 178

Query: 232 ----------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT-- 267
                                  I       F K    T                +    
Sbjct: 179 KIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYIFPMNTIATDPRSGERR 238

Query: 268 -------QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                    S   K   TK+ ++K  ++H  R   AT    AG     +    G K+V+ 
Sbjct: 239 RHHILDATLSRNIKQAVTKSNIDKRVTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVET 298

Query: 319 AETYTKGADR 328
              YT     
Sbjct: 299 TMIYTHVVSE 308


>gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23]
          Length = 409

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 77/258 (29%), Gaps = 19/258 (7%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            F  + GL  SD      +++Q +        T    T    +  +  +    + K    
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKGK 307

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
                    ++  + + + K  A   G+ K  + H  R   AT +    G     +    
Sbjct: 308 LPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G   ++  + Y +  +  
Sbjct: 368 GHTNIETTQIYARITNSK 385


>gi|325679504|ref|ZP_08159084.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108791|gb|EGC03027.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 351

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 100/342 (29%), Gaps = 30/342 (8%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           Y  R               T     + A       ++       K  TL   ++EY  S 
Sbjct: 12  YRIRVYDKTTNSRKSFTAPTKAEVKLLAAEWENGIKKKAAP---KDLTLDAAVAEYIASK 68

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140
               L+ +S   +E      +        R IT K ++  V +   ++ P +       +
Sbjct: 69  E-NILSPSSIRGYEVIRKNALGDLAKMHIRNITEKDLQMWVNTNFARYKPKTIKSQFGLV 127

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
               +     +        +V  P+ +    +  T++++ +      EG+   L     +
Sbjct: 128 TATLR-----QNKVNLEFDTVRLPEIQKYEPKIPTEKEIAKIL-TIVEGTSVELPVTIAV 181

Query: 201 YSGLRCSDSCRAGVQH------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +G+R S+                    + N       + T              +L   
Sbjct: 182 TTGMRQSEIAALKWSDYDGTFLYVHAAKVPNRDNKYIIKDTTKSRASTRAIEVDAVLKQR 241

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               +          M  +     F+    K G+   + HG R  +A++    G      
Sbjct: 242 LDRADRKGEYIS--PMLPSSVLRKFQQLCDKNGLPHFTMHGQRHGNASLMLAQGVPDKYA 299

Query: 308 MATYGWKTVDQAE-TYTKGADRIRLGIKN--SRRISSVVDSD 346
           M   G  + +  +  Y    D  +  +    S + S+++D+ 
Sbjct: 300 MERLGQSSPNMIKNIYQHLYDEKKKEVSKTMSDKFSAILDTK 341


>gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 341

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 90/320 (28%), Gaps = 45/320 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRS 121
           T++  + EY    +    + N+  S+    +  I               +  +  + I +
Sbjct: 7   TIRSFLLEYL--PNQRCFSENTVRSYRQALNLFILYLRTEQRMSVKQIRFDAMNREMILN 64

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            ++     R    ++  Q L  +R  F +A   +   I   ++V+    KT   +     
Sbjct: 65  FLDWLENDRHCGVNTRNQRLMVLRSFFNYAGELDCTQIALSVTVQNIPIKTPQSKVVEYL 124

Query: 178 DM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +Q       G +       +  +  RC +     V+ L+  +        G
Sbjct: 125 SETALEVLLKQPYPTKRTGLRNLFFMVLMYDTAARCGELLDMKVRDLRVKVQHPIAYLHG 184

Query: 231 T-------IITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKA 275
                    +         + L      +            I+  +Q M+A   +++ K 
Sbjct: 185 KGNKTRTVPLLTGTVQHCERYLRTFHTNEPADSEKPLFYTVIHGIQQPMSADTVALFLKK 244

Query: 276 KATKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
               A         +  AH +R   A      G     L    G  + +  + Y      
Sbjct: 245 YGDLACRACPEVPPHIHAHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADTE 304

Query: 329 IRLGIKNSRRISSVVDSDDP 348
           ++       +   V  +  P
Sbjct: 305 MKRA--AINKAEIVRGNAPP 322


>gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 357

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 278 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR 337

Query: 322 YTKGA 326
           YT  +
Sbjct: 338 YTHVS 342



 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA        +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLT 116


>gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 315

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   +  R ++ ++  + + ++  L + A +   +   P    ++ +        + +E 
Sbjct: 89  VIGSLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFVRQKERVGRIRFLEYEEEK 148

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                         RL   FL+ +G R  ++       +Q+   +    K+     V L 
Sbjct: 149 RLFAAIKSRCEDSYRL-SLFLVDTGCRLGEAIGVTWNDVQDQRVTFWLTKSNRSRNVPLT 207

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294
               K   +     +  F   ++ +     F   +     + G+        H +R   A
Sbjct: 208 RRARKAAHIPHEKLKGPFSMLNQVR-----FRQIWNEAKMEVGLGTDDQVVPHILRHTCA 262

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     +    G +T+     Y   A
Sbjct: 263 SRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|146293708|ref|YP_001184132.1| phage integrase family protein [Shewanella putrefaciens CN-32]
 gi|145565398|gb|ABP76333.1| phage integrase family protein [Shewanella putrefaciens CN-32]
          Length = 443

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 97/362 (26%), Gaps = 53/362 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSAL-------------TG 53
            +  +    GK ++ FR+ H  +   + +      T   A   A                
Sbjct: 35  GLILDVFPSGKKVFRFRRKHLGKDVTVTIGEFPHLTIENARKQAKHIAVDLAEGVNPNEA 94

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFD-QIIRKSGD 108
               ++          +++ L   +              +NS    +S +   I  +   
Sbjct: 95  KRLAKQEAERKEALSISVQQLFDSFEAEFMVKIKTGERRLNSLKDIQSTWKNHIQPRIAH 154

Query: 109 FDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                ITT    + ++      S+A   + LT ++ +F          INP   +++   
Sbjct: 155 LPVESITTVEAENLLKLIITKNSAAVRNKCLTLLKSMFN------EQQINPFGRIKKLAA 208

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                     E     +S   E    R     LL +G R S       + + +       
Sbjct: 209 VKRERILNQHEVRALLESLEFEPPLYRDVVMLLLLTGQRKSCVFSMEWREIDHQRGMWII 268

Query: 227 Q----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKA 275
                K+     V L    M +L                 + + +           ++  
Sbjct: 269 PTSKIKSKKPHAVPLTKEVMAILERRSHEAAHGVKYVFPAERSHSGHITENAGKGSFWYR 328

Query: 276 KATKAGV------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
              +AG+            N + H +R+  A+ S   G          G   +     TY
Sbjct: 329 ITERAGLRSPEKSATAKEDNVTIHDLRRTIASWSVMRGGNIQTTSKLLGHSDISITASTY 388

Query: 323 TK 324
             
Sbjct: 389 AH 390


>gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 397

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  ++    E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++  
Sbjct: 260 IETPKTKSGTRQVPLSKETIQAFQRVMKKRPKTDPFVIDGRSNFLFVNHKGKPKVAIDYN 319

Query: 268 QFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +    K  K  ++      + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 383

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/381 (10%), Positives = 106/381 (27%), Gaps = 55/381 (14%)

Query: 14  ERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
              ++G   Y F+         G  +RI                A           +  +
Sbjct: 7   YTLKNGNKRYLFQVYAGLDPQTGKPKRIMKRGFRTK---KEATLAANQLELSISQGDFHQ 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +     + +  ++ +             +   + + I+ + G+   R IT   ++  V  
Sbjct: 64  ESNILFRQVYEQWYQGYINTVRVSTYCRTAGMFENHILPELGNKRIRTITIAQVQRAVNK 123

Query: 126 RKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +    ++      +F +A++  Y+  +    +    ++ E      +    + + 
Sbjct: 124 WFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNPAKMITIPKRKETWGEKPENFWDKQQL 183

Query: 185 FWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------N 220
                     E  +    F  L ++G+R  +        +                    
Sbjct: 184 AQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLALTWNDVNFSKSTLSINKTLTQGMRGK 243

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---------------NDKQKMN 265
                 +       + L    +  L      +   ++                ++    +
Sbjct: 244 QIIQPPKTKKGQRVIALDKITLNYLKQWRARQRREYLMLGFNTIQRGQLIFANSNNGFKS 303

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               + W         + K + HG R  SA++  +AGAT  E+    G +        YT
Sbjct: 304 LNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLFEAGATIKEVQTRLGHEDAQTTLNIYT 363

Query: 324 KGADRIRLGIKNSRRISSVVD 344
                 +   + + ++++ +D
Sbjct: 364 HVT--KKQDNQAAEKLANYLD 382


>gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 321

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 84/303 (27%), Gaps = 59/303 (19%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQF 136
                  ++ +  ++  +    IR +       +    I   +      R+ + S+  Q 
Sbjct: 13  ELRTHQYSLRTEKNYMYWIRLFIRFNDLKHPEDMGNHEIERFLNHLAVNRQVSVSTQNQA 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L ++  L+++ VR+E        +++    K     P    + +    F +   + +L  
Sbjct: 73  LCAIIFLYRYVVRKEI------SNLKYHNAKLPKRLPTVLSNNEVTAIFNNLTGEYKLIA 126

Query: 197 EFLLYSGLRCSDSCRAGVQHLQN------------------------NIFSIKTQKTGTI 232
             L   GLR +++    ++ +                               K  +    
Sbjct: 127 GILYGCGLRINEALSLRIKDINFESKSIFIFNSKGRKDRYTLLPNTIITPLKKQIEYVKR 186

Query: 233 ITVELPDG-----------------------FMKLLAMTPIGKETFFINNDKQKMNATQF 269
           I  +                           +  +          +     +  ++ + F
Sbjct: 187 IHSDDLHHGYGTASVPTALYRKYQGALKLCGWQYIFPSKHRCTHPYDGYICRHHLHVSAF 246

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           S      A  + ++K  +AH  R   AT   + G     +    G   +   E YT    
Sbjct: 247 SKHLHRAAKLSQIDKRVTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVG 306

Query: 328 RIR 330
             R
Sbjct: 307 NRR 309


>gi|296105686|ref|YP_003617386.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647587|gb|ADG23434.1| Putative lambdoid prophage Rac integrase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 317

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 86/278 (30%), Gaps = 27/278 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ +Y + A   +L  ++   +    +  +    GD   + +++  IR+ V  
Sbjct: 7   VKSTVGELLKQYMEIAE-KTLEPSTFNGYRKACEAHLYPAFGDIPVKDLSSMMIRNYVTK 65

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183
            + T  +    LT +R     A+    +  NP   +   +   K      W  +   Q +
Sbjct: 66  LQLTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRRSNWEVDPFNQDE 125

Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQK 228
                     Q R  F+F  YSGLR S+        +      ++            T+ 
Sbjct: 126 IKAILSEAKGQARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGTKT 185

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAG 281
                 V L    ++ L                     T +          +     KAG
Sbjct: 186 KSGQRDVLLLPPALEALQNQKKFTFLEGGRVFYNPRTNTPWETDGQIRKTCWAHILKKAG 245

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           V     +  R   A++   AG  +  +    G K  + 
Sbjct: 246 VRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 283


>gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis
           H37Ra]
          Length = 352

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 13/160 (8%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245
               + RL  E L  +G+R S+ C   V  +      ++   K     TV         L
Sbjct: 33  PLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADAL 92

Query: 246 AMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAG---------VNKSAHGVRKFS 293
               +      +  +        A    +  +   T             +   HG+R  +
Sbjct: 93  HAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSA 152

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           AT   + GA    +    G  ++   + YT  A      +
Sbjct: 153 ATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAV 192


>gi|290959761|ref|YP_003490943.1| phage integrase [Streptomyces scabiei 87.22]
 gi|260649287|emb|CBG72402.1| putative phage integrase [Streptomyces scabiei 87.22]
          Length = 435

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 96/387 (24%), Gaps = 64/387 (16%)

Query: 11  VTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V  +  RHG   +    +    G      +P     +     A T +   R     PR  
Sbjct: 35  VRVKSDRHGSGLRYRARYIGPDGTEKSKSFPDRQKRLAEQWLAQTEADMARGEYIDPRTA 94

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
            TT +     +  S       +NSR + E           G         +HIR+ + + 
Sbjct: 95  RTTFRQYAERWVNSHTGE---INSREAAERRLRLHAYPHIGTRPLGSFKPEHIRAWIAAL 151

Query: 127 KHT--PSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + T    S  + +  ++      AV    ++ NPC +      K    R         F 
Sbjct: 152 EDTVPAESHRRIIVGTVSAALSAAVDDGLLSKNPCRARTVQLPKPGKPRVDPWTSAHVFG 211

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
              +   + R   +     GLR  +     V  L      +                   
Sbjct: 212 VRAALAQRFRATVDPGAGCGLRQGEIFGLSVDELNYEGGWLTVGHQLKRIRGKYVFALPK 271

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------------------ 270
                 V LP      L           +    +  +    +                  
Sbjct: 272 GGKVRDVPLPRAVAAALRAHSEEFAPVDVTLPWRTPDGPLVTKRLLFSGVEGNHVRVSNF 331

Query: 271 --IWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWK 314
               +K     AGV                  H +R F A++  DAG     L    G  
Sbjct: 332 NAHHWKPALAGAGVIPKPERGERYASAPEDGMHALRHFYASVLLDAGENIRALSQYLGHS 391

Query: 315 TVD-QAETYTK----GADRIRLGIKNS 336
                  TYT        R R  +   
Sbjct: 392 DPGFTLRTYTHLMPSSEGRTRKAVDGV 418


>gi|15675872|ref|NP_270046.1| putative integrase [Streptococcus pyogenes M1 GAS]
 gi|13623107|gb|AAK34767.1| putative integrase - phage associated [Streptococcus pyogenes M1
           GAS]
          Length = 381

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 49/361 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++       T       A           ++ 
Sbjct: 3   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITG-RTRKEVNQKAKHAQFDFLSNGSTI 61

Query: 65  RKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
           ++K    T K L   + ++     +   +  +  +     I+   G+    KIT   I+ 
Sbjct: 62  KRKVVIKTFKELSHLWLETYKLT-VKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQM 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKED 178
            +        +     + +R + +  V    +  N    +  P+++    + ++     D
Sbjct: 121 LINRLSKYYVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSD 180

Query: 179 MQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           ++ F          R       + ++ LL +GLR  ++C      +     +I   KT  
Sbjct: 181 LKSFLEHLETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYN 240

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFS 270
                            + +    ++ L +  + +   F                   F+
Sbjct: 241 KNLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFN 300

Query: 271 IWFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    +TY 
Sbjct: 301 ASVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 360

Query: 324 K 324
            
Sbjct: 361 H 361


>gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357]
          Length = 326

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 76/306 (24%), Gaps = 27/306 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                     A+       T  + ++        TLK ++  + K  H  SL    +  +
Sbjct: 3   KQFATKGEALAFERHTMEETESKPWLGESVD-RRTLKDVVELWFK-LHGKSLTAG-QHVY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRV 142
           +     ++   G+     +T+K      + R               +P +     + +  
Sbjct: 60  DKLL-LMVGALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSS 118

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLL 200
           +F    R    +    L   R     E    W   +         +   P LA      L
Sbjct: 119 VFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++       +     +    K     ++ +     + +               
Sbjct: 179 STGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ 238

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   F    +  +      +  H +R   A     +G     L    G   +    
Sbjct: 239 --------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTM 290

Query: 321 TYTKGA 326
            Y   A
Sbjct: 291 RYAHLA 296


>gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 481

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 102/298 (34%), Gaps = 25/298 (8%)

Query: 70  TLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           TL  +       Y K    G  A  +   +   +  +           D   +++T   I
Sbjct: 178 TLMQVFRRHNENYEKQVEAGMKAKGTLEKYRVVYKHLQEFLDIRYHVKDIALKELTPAFI 237

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    ++   ++  +R +   A+  E++  +P    E  K++       T
Sbjct: 238 SDFEMFLRTDKHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLT 296

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           K++++       + ++    R  + F  ++GL  +D      ++++      +       
Sbjct: 297 KDEIRLLMEGKLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRK 356

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHG 288
            T  + +  +  +A   IGK      N +        +     +A A + G+ K  + H 
Sbjct: 357 KTGVVSNIRLLDIANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQ 416

Query: 289 VRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            R  +AT      G     + +  G K++   + Y K         ++   +++ +++
Sbjct: 417 SRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMENLAARLNN 472


>gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 353

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 88/280 (31%), Gaps = 31/280 (11%)

Query: 94  SFESYFDQIIRKS---GDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAV 148
           ++    +++ +     G    ++I  + I       +   + ++   +  +M   F++  
Sbjct: 75  TYYKPLEKLYKHLTALGLASMQEIDEEMIIDFLTSSTAGLSDATKKNYRIAMINFFRYID 134

Query: 149 RQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQFKSFWSEGS-------QPRLAF 196
           +         + ++                 +++++ +F               + R   
Sbjct: 135 KNNEDKHLYEIELKNWGGLKGKAGQKLPVFLSEDEITKFLHAIDTYPFRPDVAARNRAII 194

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFM-----KLLAMT 248
           + +LY+G+R S++    ++++           T K      V +    +     + L   
Sbjct: 195 KMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKAQKIRKDLEEWLTKR 254

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAH 305
              K   F N     +     S   +      G+ K    AH +R   AT+  +      
Sbjct: 255 NCEKGLLFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLRHTFATLLYNKSKDLV 314

Query: 306 ELMATYGWKTVDQAETYTKGADRIRL--GIKNSRRISSVV 343
            +  + G  ++D +  YT   D+ +L         +    
Sbjct: 315 LVQESLGHASLDTSRIYTH-FDKEKLSKAASIMDDLEKEK 353


>gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
 gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal
           SAM-like domain [Reinekea sp. MED297]
          Length = 325

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 24/264 (9%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++++         ++ +++    +    + R   + D   I     +   ++     S A
Sbjct: 55  LAQFLTHLATQKRVSPSTQAQALNALVYLYRHVLEIDLGDIDFLRSQRRFKNIPTVLSQA 114

Query: 134 ------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                  +    +RV+                S  R               M+       
Sbjct: 115 EVTDLLNRIRGKLRVM----------DSLLYGSGLRVNECVTLRMKDVDLAMKSITIRNG 164

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242
           +G + R+        G   S       QH+Q+         +                + 
Sbjct: 165 KGLKARVVPIPERLVGPLQSVMVHRKEQHIQDTLQGAGYVQLPWAFDRKSPNAAQSIQWQ 224

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            L +   +  +       +   + +      K  A +A + K  + H +R   AT     
Sbjct: 225 FLFSSGVLNVDKKSGRKMRWHCSTSTLQKAVKKAAEQAQLTKRVTCHTLRHSFATHLLTT 284

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G     +    G K ++    YT 
Sbjct: 285 GTDIRTIQQLMGHKDLNTTMIYTH 308


>gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 343

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 79/303 (26%), Gaps = 42/303 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHIRSG--- 122
              +Y        ++V++  S+      ++R             D   +   H++     
Sbjct: 16  FFQDYL--PTLRGVSVHTIRSYRDAVVLLLRFTARESRCPIEALDLSDLNADHVKRFLKF 73

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
               R ++ ++    L ++    ++ + +    + P   V     K        +     
Sbjct: 74  LESERGNSIATRNARLAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPIEYLETA 133

Query: 181 -------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGT 231
                          G +    F  +  +G R  +     +  L+ +         K   
Sbjct: 134 EIETLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPPQVRLRGKGNK 193

Query: 232 IITVELPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKA----- 277
           +    +     +LL      +            F+N    +M+        +        
Sbjct: 194 VRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGVRYLLRKYMLIAST 253

Query: 278 ---TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
              T A      H +R  +A     AG     +    G  +++    Y +   D  R  +
Sbjct: 254 RNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQAL 313

Query: 334 KNS 336
              
Sbjct: 314 AQV 316


>gi|110640480|ref|YP_668208.1| phage integrase [Escherichia coli 536]
 gi|14594860|emb|CAC43408.1| integrase of Shigella flexneri bacteriophage X [Escherichia coli]
 gi|110342072|gb|ABG68309.1| phage integrase [Escherichia coli 536]
          Length = 386

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 109/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++   P   +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRTP--KISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|87162323|ref|YP_493499.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161509091|ref|YP_001574750.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294850166|ref|ZP_06790902.1| integrase [Staphylococcus aureus A9754]
 gi|87128297|gb|ABD22811.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160367900|gb|ABX28871.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294822940|gb|EFG39373.1| integrase [Staphylococcus aureus A9754]
 gi|315197242|gb|EFU27580.1| integrase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140818|gb|EFW32666.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320142989|gb|EFW34781.1| site-specific recombinase, phage integrase family [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 406

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 105/400 (26%), Gaps = 71/400 (17%)

Query: 13  KERTRHGKIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K + +  K  YY +         RR+   L    + +   A          K        
Sbjct: 7   KNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLNDKKPTT 66

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            K  T      E+ ++          +  +  S  + + +    D    KIT  + +   
Sbjct: 67  LKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVF 126

Query: 124 ESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPC-------LSVERPKRKTEGIRP 173
           +            +  L+  + +F++  R   +              ++           
Sbjct: 127 DEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNK 186

Query: 174 W--------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           +              TK                 L  EF   +G+R  +      + +  
Sbjct: 187 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDF 246

Query: 220 NIFSIKTQKTGTI--------------------ITVELPDGFMKLL-------------A 246
           +  S+    T                        T+ L     ++L              
Sbjct: 247 DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G + 
Sbjct: 307 DGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSL 366

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             +M   G          Y+   ++  +      ++  V 
Sbjct: 367 KAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559]
 gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559]
          Length = 416

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 90/289 (31%), Gaps = 26/289 (8%)

Query: 67  KPTTLKWLISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKH 118
              T K L     Y +      L   +  ++++    + +         D   + I    
Sbjct: 103 VDDTFKKLSDILTYHEDKMRTILKPGTLKNYKTTSKYLKKFLKTKMKTDDVFLKHINYSF 162

Query: 119 IRSGVESRK------HTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSV--ERPKR 166
           I       +      H P+ +       L  ++ L   A + E+VA  P      +  K 
Sbjct: 163 ITEFEHFLRTFKSKTHRPTPSNNGVMKHLERLKKLMNLAQKLEWVAKEPFAKFSLKFTKV 222

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           + E +     +++ +F S  +  +Q R  F F  Y+GL   D       H+   I     
Sbjct: 223 EREFLDEVEVQELIKFTSHRTALTQTRDVFIFACYTGLSWIDVKNLSQDHIVRGIDGSNW 282

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVN 283
             T    T       +  +    + +    + + +      +  + + + K  A + G+ 
Sbjct: 283 IYTAREKTDTPVKIPLLPIPEKLLSRYAEKMMDSELLLPVYSNQKTNKYLKEIAIELGIR 342

Query: 284 K--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           K  + H  R   AT      G     +    G   +   + Y +  +  
Sbjct: 343 KKLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESK 391


>gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574]
          Length = 435

 Score = 92.5 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 33/294 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S    + ++       +     D   + I    I        R  ++ R    ++   +
Sbjct: 121 RSRTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNY 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV Q  +  NP  + +  K        + +    +   +   SE  Q RL
Sbjct: 181 LCWLSRLMYRAVSQNIIRCNPFENAKYEKEDKNIRYLQKYDVARLMAMRMNDSEAEQARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL  +D      +H+Q      K  +     T       +  +A T I    
Sbjct: 241 MFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCR 300

Query: 255 FFINN-------------------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
              +N                          +  S          G+    S H  R   
Sbjct: 301 KANHNDLTTGQDEQTMKEKDGDFVFHPDCTRSVMSAKLCIVGKACGISQRLSFHMARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            T+S  AG     +    G  ++   + Y +  D      ++  R+ + + S +
Sbjct: 361 GTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK--ISEDMDRLIAKLSSKE 412


>gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
 gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136]
          Length = 413

 Score = 92.5 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 85/270 (31%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPS----SAIQ 135
             +  +   +++   ++           D  + +++   I++     K        + ++
Sbjct: 130 DYSPVTINRYKNVLRKLETFVPCFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 189

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  ++        T  ++Q   +   +  +  L 
Sbjct: 190 YMKCLKKITNMAIAKEWMRKDPFYGYKM-EQDETDPVFLTNNELQAIMNREFDIPRLELV 248

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGF------- 241
              F F  ++GL  +D      +HL+ +       + G                      
Sbjct: 249 KDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLPVP 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + +L                  +   + + + K  A   G+ K  + H  R   AT    
Sbjct: 309 LAILKKYESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATTVTL 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
                  E+ A  G  +    + Y +  DR
Sbjct: 369 ANNVPLQEVSAMLGHASTRMTQHYARVMDR 398


>gi|22536401|ref|NP_687252.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|22533228|gb|AAM99124.1|AE014201_22 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
          Length = 384

 Score = 92.5 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 107/358 (29%), Gaps = 47/358 (13%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G +     Y  +                    Y + L       +     +    
Sbjct: 9   KKAKNGYLYFVKIYMVKDSQRADHIKRGFRTRKEAKDYEARLIYLKASGKLEEFIKPTHK 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   +  ++ ++     +   +       F   I+   GD    KI+    ++ +  +  
Sbjct: 69  TYNEIFEKWYQAYQDM-VEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFITDKAK 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK--SF 185
           T  +  Q  +    +F +A++ + +  NP   +  PKRK   I   WT +++Q+F     
Sbjct: 128 TFKNIKQIKSYTGKVFDFAIKMKLLKHNPMAEIIMPKRKKTRIENYWTVQELQEFLAIVL 187

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQKT 229
             E  +    F  L YSGLR  +        +                        T+  
Sbjct: 188 QEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQTETLSVDKSLGRLDGQAIEKGTKND 247

Query: 230 GTIITVELPDGFMKLLAMT--------------------PIGKETFFINNDKQKMNATQF 269
            ++  ++L    + +L                                +   + ++A   
Sbjct: 248 FSVRKIKLDSETISILQEWKSISQKEKAQLAVAPLSIEQDFLFTYCTRSGSIEPLHADYI 307

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +        K G+ K S HG R   AT+  + G          G  +     +TY+  
Sbjct: 308 NNVLSRIIRKHGLKKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHS 365


>gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 77/258 (29%), Gaps = 19/258 (7%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            F  + GL  SD      +++Q +        T    T    +  +  +    + K    
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKGK 307

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
                    ++  + + + K  A   G+ K  + H  R   AT +    G     +    
Sbjct: 308 LPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G   ++  + Y +  +  
Sbjct: 368 GHTNIETTQIYARITNSK 385


>gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 324

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 85/288 (29%), Gaps = 20/288 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            ++      G  + ++   +E+ +  +           D  ++++T   I       +  
Sbjct: 35  EDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVN 94

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   ++  +  + + A+ +  +  NP  +      + +      +E     +  
Sbjct: 95  KSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGYLLREEVETLLQYH 154

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S    R  F F  ++G    D  +    HLQ+     K        +    +  + 
Sbjct: 155 PKSASAELVRDLFVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDMPCNVRLL 214

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +A   I K       +      +  +     K       +      S H  R    T+ 
Sbjct: 215 DIAEKNIEKYEGTTRTEALFPTPSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLF 274

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G     +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 275 LTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 322


>gi|284007611|emb|CBA73220.1| phage integrase [Arsenophonus nasoniae]
          Length = 336

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 108/332 (32%), Gaps = 23/332 (6%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRR-IRLPYPHESTFIPAY---MSALTGSTPKREYIN 62
           +PP + K   R+G   Y +R    R+   L          A       L     K     
Sbjct: 1   MPPNLYK---RNG--YYSYRDPRTRKEYGLGRNKAYAINEAISANQLLLNTEKVKPLTER 55

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
              +        +  Y +      L   +   ++     I +   +   + ITTK I   
Sbjct: 56  IDGQGSVYFHEFLDRYEEILKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNITTKEIADF 115

Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++    +   ++A    + +   F+ A+    + INP  S + P +        + ED  
Sbjct: 116 LQLSINEERITTAKLMRSLLNDCFREAISLGLIQINPVTSTKTP-KIKIQRARLSLEDFN 174

Query: 181 QFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
                 + G      A +  L +G R SD  +   + + +    I  QKTG+ I + L  
Sbjct: 175 TILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTGSKIAIPLDI 234

Query: 240 GFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVR 290
               +         +    F INN+  K+   + S  F+     + +N      S H +R
Sbjct: 235 ELYGIKLSKTIADCVNNSEFVINNNGNKITVERISKEFRRFRDISQLNWVGEPPSFHEIR 294

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
             SA         ++      G K+      Y
Sbjct: 295 SLSA-RLYTETMGSNFAQKLLGHKSATMTAKY 325


>gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591]
 gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869]
 gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112]
 gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120]
 gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167]
 gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591]
          Length = 337

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 103/303 (33%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA        ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri]
          Length = 327

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 65/257 (25%), Gaps = 13/257 (5%)

Query: 77  EYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           +Y +      +++ N++ +  +    + R+        +           +     +   
Sbjct: 61  DYLEHLVVKQNVSPNTQKTALNALIFLCREYLQQSVDNL-----EFKRSKKATKLPTVFS 115

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
              ++ V+ +     + +A     S  R                +       +G++ R  
Sbjct: 116 HSEAISVINELNHPTKLIAQLMYGSGLRINEALRLRVDDIDLIHKTITIRNGKGNKDRTT 175

Query: 196 FEFL-----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                    L + L              ++   +               G+  +     I
Sbjct: 176 VLPDSIIPELKTQLAFVKQQHKMDAINGDDEVYLPNAIAKKYPHRAKSYGWQYVFPSKQI 235

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K+       +  M              K  ++K  S+H  R   AT   + G     + 
Sbjct: 236 SKDPRSGQRRRHHMLDRSVQKQVTNAIKKLEIDKKASSHTFRHSFATRILERGGDLRTIQ 295

Query: 309 ATYGWKTVDQAETYTKG 325
              G   +   + YT  
Sbjct: 296 ELLGHSDIKTTQIYTHV 312


>gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium]
          Length = 312

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 69/305 (22%), Gaps = 58/305 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+   R        ++ +  ++  +  + I        +++  + +R  +      R  +
Sbjct: 13  LLDRMRAEIRVRHYSIRTEEAYVDWSRRFILFHDKRHPKEMGAEEVRDFLSHLALERNVS 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q  +++  L++       + +     V   K         T  + ++  +     
Sbjct: 73  ASTQNQAKSALLFLYR---EVLKIELPWLDEVIAAKSAKRLPVVLTPTETRRLLNSM--S 127

Query: 190 SQPRLAFEFLLYSGLR--CSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ 235
               L    L  +G+R       R      +     ++  K                   
Sbjct: 128 GTMGLVASLLYGTGMRLLEGLRLRVKDVEFERREIIVREGKGNKDRVTVLPENLILPLQA 187

Query: 236 ----------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269
                                    LA         +                       
Sbjct: 188 HLKKVKALHERDLEAGFGEVYLPDALAKKYPKAGRAWGWQFVFPSTVRSVDPRSGIERRH 247

Query: 270 -------SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +  A  A +    S H +R   AT    +G     +    G   V    
Sbjct: 248 HLYEASVQRAVREAAKLAEIIKPVSPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTM 307

Query: 321 TYTKG 325
            YT  
Sbjct: 308 IYTHV 312


>gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
 gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1]
          Length = 349

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 78/308 (25%), Gaps = 49/308 (15%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGV 123
           +     + ++      +  +  ++    D+ +    G             ++   +R+ +
Sbjct: 27  RDAFLHWMETE--RRASPLTLAAYRGDLDRFLAFLVGHLGAGPDLAALAGLSLADLRAWL 84

Query: 124 ESRKHTPSSAIQF-------------LTSMRVLFKWAVRQEYVAIN------PCLSVERP 164
                   S  +              ++++R  +++  R   V            +    
Sbjct: 85  AHEHAAALSGRRATTQDRAARTRARRVSALRSFYRYLARYHGVDNPAPGLLATPRTRRPL 144

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-- 221
            R     +     +     +       +    F  L   GLR S++    V+ L      
Sbjct: 145 PRPLPTAQALDVPEGVADIAHTPLARVRDGALFMLLYGCGLRISEALGLDVRDLDRAQAL 204

Query: 222 --------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----- 268
                         K G    V +    M  L            +               
Sbjct: 205 GEGTKGDGVLRIQGKGGRERMVPVLPQVMAALRRWRGVHPLPQADAPLFVGVRGGRLQAG 264

Query: 269 -FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +     AG+    + H +R   AT   + GA    +    G  ++   + YT  
Sbjct: 265 IAQRAMRTWRHMAGLPEHATPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRYT-L 323

Query: 326 ADRIRLGI 333
           AD  RL  
Sbjct: 324 ADEARLMD 331


>gi|298375059|ref|ZP_06985016.1| transposase [Bacteroides sp. 3_1_19]
 gi|298267559|gb|EFI09215.1| transposase [Bacteroides sp. 3_1_19]
          Length = 368

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 87/277 (31%), Gaps = 24/277 (8%)

Query: 79  RKSAHWGSLA----VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP-- 130
             S     L       +  ++ S    + +  G  DF + K++ + I    +    +   
Sbjct: 80  YISDKIRELRQSGHEGTARAYNSSLSSMKKFLGSRDFPFNKLSPQVITMYHKQLLASGVC 139

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++   +L +++ L++   ++  +           K +    R    + +++      E 
Sbjct: 140 ENTICFYLHNIKALYRKGCQEMGLEQLSPFREVHFKTEKTVKRCLETDVIKKVSRLELEE 199

Query: 190 ----SQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               S  R  F F  Y+ G+   D        L  +    +  KTG ++ V +    +++
Sbjct: 200 GSTVSLARDIFMFSFYTRGMSFVDIALLKKADLFPDEICYRRHKTGQLMRVGMNRQIIRI 259

Query: 245 LAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           L                         K    +     K  +   G+      H  R   A
Sbjct: 260 LTKYENTVGEYVFPLFTEEQEPYAGYKNAYHKIRYALKKISCSLGLSTPLRLHAARHSWA 319

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           TI+ + G   H +    G  + +    Y K  DR  L
Sbjct: 320 TIAKEHGIPVHIIGECLGHMSEETTRIYLKDLDRSVL 356


>gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 409

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 78/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIRSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  ++GL   D       ++  +          T       D  + LL +  +  + + 
Sbjct: 248 VFACFTGLAYIDVAGLTQDNICKSFDGNLWI--MTKRQKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPNGKILPVISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341]
 gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341]
          Length = 320

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 377

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 95/331 (28%), Gaps = 31/331 (9%)

Query: 33  IRLPYPHESTFIPAYMSALTGS----TPKREYINSPRKKPTTLKWLI----SEYRKSAHW 84
           ++    +  T   A    +  +      K +   +  K    L   I     EY++    
Sbjct: 53  VKAKRENAKTLRQAEELIIAKTENMVDDKAQEEAAKDKSKMLLSDFIGLLMEEYKQREQP 112

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----------SSAI 134
             L      +  + F++            I  +      E  +  P          ++A 
Sbjct: 113 AHLH---LRASRTKFEKFRP---GTRLCDINKRFCTDYAEWLQSEPLTPQGKPLAQATAC 166

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                + ++   A ++ Y+  NP     + E+  R        T +++++ +        
Sbjct: 167 SCFWILGIILSAAWQKGYIKNNPWKLLSAKEKIARPESKREFLTLDEVRKLEDTPYIKEN 226

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R AF F  Y GLR  D        +  N             +  +              
Sbjct: 227 IRRAFLFTCYCGLRVGDVTDLCWSDISVNGGQHFVSVVMQKNSKPISLPLPAKALSWLPE 286

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309
           +     +      + T  +   +  A  AG+++    H  R    T+   AG   +    
Sbjct: 287 RGEPEASVFSLP-SHTVLNKHLRKWAELAGLDRHLHFHLSRHTYGTMLITAGVDLYTASK 345

Query: 310 TYGWKTVDQAETYTKGADRIR-LGIKNSRRI 339
             G   V   + Y K  DR +   +    ++
Sbjct: 346 MMGHADVRPTQVYAKIVDRKKEEAVSLIDKV 376


>gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357]
          Length = 321

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 104/303 (34%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 8   RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 62

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 63  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 122

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 123 TALIEAELFFGEHPIRGTKRLKEEKPDTGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 180

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 181 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 238

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA      + ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 239 -----FRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 293

Query: 324 KGA 326
             A
Sbjct: 294 HFA 296


>gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74]
 gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 26/253 (10%)

Query: 107 GDFDYRKITTKHIRSGVE--------------SRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           G     ++T    +S  +               +    +SA  +          AV  + 
Sbjct: 126 GKLTVDEVTADFCKSFRDYLTTAKPLNVTKSAKKAIAHNSAKGYFVIFGTALNRAVDDKL 185

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
             INP  +V+   RK       T  ++Q       +    + A  F   +GLR SD  + 
Sbjct: 186 FTINPNDTVKGLTRKETQREFLTLAELQSLAKTECDLPYLKRAALFSALTGLRYSDVAKL 245

Query: 213 GVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
               +  ++     +        +     +   ++L         F         N    
Sbjct: 246 TWSEVYEDVNGSYIRFMQQKTEGVETLPLNETARILLAERSEGVVFPELLYSSWQNQK-- 303

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  A ++G+ +  + H  R   AT+    G   + +    G + +   + Y K  D
Sbjct: 304 ---LSEWAHRSGIKRRITFHAFRHTFATLQLMEGTDLYTISKLLGHRNITTTQIYAKIVD 360

Query: 328 RIRLGIKNSRRIS 340
             +       R+S
Sbjct: 361 TQKRA--AVNRLS 371


>gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica
           RB50]
 gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50]
          Length = 326

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 81/290 (27%), Gaps = 40/290 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH--- 128
           ++++ +        + ++   +     Q+ + +        ++   HIR  V        
Sbjct: 14  MADWLRHLQAHRRYSAHTLDGYTRDLRQLAQLAAAAGLPLERVANGHIRHFVARLHAQGL 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            P S  + L + R  ++W      +  NP   V  PK      +  + E  Q        
Sbjct: 74  GPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPA 133

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
                    +    FE L  SGLR ++     + + +   +  ++               
Sbjct: 134 RLATEPAALRDHAMFELLYSSGLRLAELVSLDLHYERTPEYESRSWLNRDDAEVIVVGKG 193

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276
               +V +    +  L      +                      +++      +     
Sbjct: 194 GKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQLQLARL 253

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A  AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 254 AQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTR 303


>gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100]
 gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100]
          Length = 355

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 98/300 (32%), Gaps = 41/300 (13%)

Query: 75  ISEYRKSAHWGSLA-VNS-----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +  Y K A    L+ VN+     +  +E            +  ++I  + +   + S   
Sbjct: 58  LDAYVKKARNAGLSGVNTYFNPLKKLYEYLL-----FYKLYSLKQIDEELLVEILASISA 112

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKE 177
           +    S     +  +   F +  +Q       ++      +          +     +++
Sbjct: 113 SLSDASKKNYRIAVIN-FFAFLDKQNEEEQKAHIFDINLKNWAGISGSRGVKLPEYMSED 171

Query: 178 DMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           ++ +F          +   + RL  + ++++G+R S++    ++ +         +    
Sbjct: 172 EVGKFLDAIDTIDFKNNTIRNRLIIKIIIFTGIRVSEAINIKLKDISEENDLYIIRIRAK 231

Query: 232 IITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                +     +L+                  F+N + + +     S   +    KAG+ 
Sbjct: 232 GNKYRVVMIKKELIEHLLKDVRVNYLSYDGLLFVNRNGKALTQAYISRIVEQILFKAGIR 291

Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRI 339
           K    AH +R   AT+          +    G  +++ +  YT   +   +L  + ++++
Sbjct: 292 KQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLAAEVAKKL 351


>gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
 gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032]
          Length = 318

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 85/281 (30%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
           +  SR +  S+   +    G        +  +   H++  +E    +   P++   +L++
Sbjct: 37  SAASRQTMRSFLHIVAGMLGAGALQRCPWGSLRRHHVQGLLEMLSASGRAPATINTYLSA 96

Query: 140 MR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++          L      Q+ +A+         + +               +    +G 
Sbjct: 97  LKGTAREAWMMKLMDTDSYQQILAVRAVRGSRLTRGRALTTEEVRALFAFCEQDKSCKGP 156

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           +       +L  GLR S+      + +     +++   K        +PD   + L    
Sbjct: 157 RDAAMLAVMLGCGLRRSEVVGLDYESILEPDQALRVLGKGNKERLAFMPDTVWQRLRHWT 216

Query: 250 IGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                        ++                      + T+ G++  + H +R+  A++ 
Sbjct: 217 DTVRGEHPGPLFTRIRAGDDVTSERLTPQAVYHILTERRTQCGIDDCAPHDLRRTFASMM 276

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  +V   + Y +  D R+R      R
Sbjct: 277 LDNGEDLITVRDAMGHASVTTTQKYDRRGDARLRRAASKIR 317


>gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 354

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 85/289 (29%), Gaps = 31/289 (10%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSM 140
               +  ++     Q       FD                   +  +  P++  + ++++
Sbjct: 68  YKSTTASAYAVDLKQWFAWCALFDVDPFDAVRAHVDTWAVHLADEGRARPATLARKISAV 127

Query: 141 RVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRL 194
           R  + +AV   Y + +P  +  +         +  T    +       ++    G +   
Sbjct: 128 RNFYAYAVDSGYTSSSPVPIKDKALHLPRVSRKSQTLGPDREESAAMLEAAAQRGVRDEA 187

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPD 239
               LLY GLR S+ C   V+ L +       +                    +   L +
Sbjct: 188 VVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQDQAIAPPAAGCLDAWLAE 247

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
                           F+  +  ++   Q     ++ A  AGV K  S H +R    T+ 
Sbjct: 248 RARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGVEKKISPHSLRHACTTML 307

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
            DAG    ++    G       E Y     R  L    +  +S V   D
Sbjct: 308 LDAGVPLRDIQVYMGHANSATTERY--DLGRQHLDKSPAYALSGVFARD 354


>gi|297625638|ref|YP_003687401.1| phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921403|emb|CBL55956.1| phage integrase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 382

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 99/362 (27%), Gaps = 40/362 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREYINSPRKKP 68
           +R   G     +        + P+   +              ++    +   + + + + 
Sbjct: 11  DRLPSGNYRARYVGPDLVLHKAPHTFTNKSHAERWLLDEQDLISRDVWEAPEVRTAKPRA 70

Query: 69  TTLKWLISEYRKSAH---WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
            T+   IS+  +         LA  +   +   +  +I           +T   + +   
Sbjct: 71  LTVGEWISKVIERRANRTRRPLAQTTIDLYRKDYRLRISETLCAVRLADLTPAMVATWWH 130

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +   TP+   +    +R     A+  E +  +PC   E  K                   
Sbjct: 131 ALPDTPTQNARAYALLRSAMSDAMEDELIERDPCRLKEAGKPTPAHTGEAITVPELFTYL 190

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                S+ RL        GLR  +      + +      +  ++  + +  +      ++
Sbjct: 191 EAVPESR-RLPLMIAALCGLRSGEVRGLRRRDVDLKAGMLHVEQAVSRVRADNHRWEWRI 249

Query: 245 LAMTP----------------------------IGKETFFINNDKQKMNATQFSIWFKAK 276
                                                 F   +    M  T         
Sbjct: 250 APPKTAAGVRTVALPSPVTDALRTWLKEAPVNGWDGLLFPATDGHSPMPGTVLRDAHVKG 309

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               G    + H +R+ +AT++A  GAT  ELM   G  TV  A  Y + AD  R   + 
Sbjct: 310 REAIGRQTLTIHDLRRTAATLAAQGGATTKELMRLLGHTTVSVAMLY-QVADEERDRARA 368

Query: 336 SR 337
            R
Sbjct: 369 QR 370


>gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 416

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 101/291 (34%), Gaps = 29/291 (9%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKS---GDFDYRKITTKHI 119
           ++  T+  LI+ Y K      LA  +  ++   ESY  + +++S    D    ++  + I
Sbjct: 109 EERITILKLIT-YHKQVSEHKLAAGTIKNYHTTESYIKKFLKESYKKNDLLLDELNFRFI 167

Query: 120 RSGVESR-------KHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
                          H P +    +     +R +   A+  +++  +P    +  + +  
Sbjct: 168 LDFESFLTNYKPIDHHKPLNNNGIMKHMERLRKMINLAITMDWLERDPFAKYK-LRFEKV 226

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQN-----NI 221
                +KE+++  ++      + +     F F  Y+GL   D      +++       + 
Sbjct: 227 ERGHLSKEELEILENKTFSIERLQSVLDMFLFSCYTGLAYIDISNLSRENIMKGIDGKDW 286

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
              K QKT T++ V L      ++                  ++  + + + K  A   G
Sbjct: 287 LMTKRQKTDTLVKVPLLYQASTIIKNYKEHPVAKASGTIFPVISNQRMNGYLKEIADICG 346

Query: 282 VNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           ++K  + H  R   AT      G     +    G  ++   + Y K  +  
Sbjct: 347 ISKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHK 397


>gi|161613260|ref|YP_001587225.1| hypothetical protein SPAB_00970 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168236213|ref|ZP_02661271.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734635|ref|YP_002115152.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|161362624|gb|ABX66392.1| hypothetical protein SPAB_00970 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710137|gb|ACF89358.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290593|gb|EDY29948.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 393

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 25/341 (7%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPR-- 65
            +    T  G I + FR    G++ R+         +    + +       +    PR  
Sbjct: 27  GLGIRITPKGIISFQFRFRWDGKQHRMGLGRYPALTLRDARNIVADLRESVDKGIDPREL 86

Query: 66  ------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TK 117
                 KK  T+K  +  +  +    +L   ++  + S     +          +I    
Sbjct: 87  AGNNKSKKKPTVKDCLDYWEANYVNVALREKTKALYRSTVIKHMSDAFAGVPIEEIPVRL 146

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER------PKRKTEGI 171
            +    +  +  P  A Q L  +R    W  R+++++    + ++       P      +
Sbjct: 147 WVERFTDEERLNPRRARQLLVQLRAAIGWCTRRQFISTADLMLLQPKDVGTKPTVGEVTL 206

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC------RAGVQHLQNNIFSIK 225
                  +          +  RL  + L+  G R S+            + +        
Sbjct: 207 SYNQLAKIWLAIERSRGSTSNRLLHQLLMLYGARNSELRLAVKEEFDREEGIWTVPAEKS 266

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                    +      +   A    G   F   + K+ M     + +     +  G+   
Sbjct: 267 KTNRIIRRPIFDAADQLLKKAEMTYGNILFPGPDLKKSMTIAGANRFLGRIESSLGIGEF 326

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           SAH  R+  AT  ++ G   H +    G +       Y K 
Sbjct: 327 SAHDFRRTLATRLSEEGIAPHVIEKMLGHELGGVLSVYNKH 367


>gi|111224822|ref|YP_715616.1| integrase [Frankia alni ACN14a]
 gi|111152354|emb|CAJ64089.1| Integrase (Recombinase) [Frankia alni ACN14a]
          Length = 442

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 109/393 (27%), Gaps = 66/393 (16%)

Query: 14  ERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   G+           G+R R     ++    A          +         KP T+
Sbjct: 33  YKDASGRWRATVDLGWKDGKRQRKYLSGKTRTEVAEKLRTLHRQQEDGVKVVTGNKPLTV 92

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR---SGVESRK 127
              ++ +  +     +  ++  ++  Y   +I+ + G +   ++  +H+    +  ES  
Sbjct: 93  DQWLTFWLDTIASRKVRPSTLATYRGYVRNRIVPELGGYRLDRLEPEHLESFYAACESDG 152

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             P++ +Q    +    K A R+  VA N    V+ P  + + + P + ++ +      +
Sbjct: 153 LAPATVLQMHRIISRALKIAHRRGKVARNVATLVDAPTVQRDEVSPLSAKEARAVLDT-A 211

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQK 228
           +G +    +   L  GLR  ++       +                     +  +     
Sbjct: 212 KGGRNPARWSVALALGLRQGEALGLPWNAVDLDSTPATLTVRQALQRRAWAHGCTDPKSC 271

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284
                  +   G + ++           +       +        + +A +AG       
Sbjct: 272 GLARRCPQRTGGGLVIVHPKSRAGRRTIVLPAGLAADLRAHRSAQQQEAEEAGTGWRNEH 331

Query: 285 ---------------------------------SAHGVRKFSATISADAGATAHELMATY 311
                                              H  R   A++          +M   
Sbjct: 332 GLVFTQPTGHPIDPSADHRAWKNLLKAAGVRAARLHDARHTMASLLLAQKVHPRVVMEIM 391

Query: 312 GWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
           G   +     TY+  A    L    + ++ + +
Sbjct: 392 GHSQISLTLGTYSHVAPE--LSTDAANQMGATL 422


>gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 350

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 99/293 (33%), Gaps = 32/293 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSG 122
           ++  TL+     Y +       +  ++ S+       +    D       +++   +   
Sbjct: 16  RQTQTLRQHTEHYLEHLSAAGYSARTQESYWERLLPFVAWCEDRGLLHAPQVSLAVLEGY 75

Query: 123 VESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
               +          T  S +  LT +R+L++W +++  +  NP   +  PK +      
Sbjct: 76  QRWLRGYRKADGHPLTAGSQLNRLTGIRMLWRWLLKRHVILYNPAEMLTLPKEEKRLPAQ 135

Query: 174 W-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
                 T   +Q  +S    G + R+  E L  SG+R +++    +  +     +  ++ 
Sbjct: 136 VLSVEETGGVLQAMESGTVLGLRNRVILEVLWSSGVRRAEAVSLMLSDIDLSRGVMMVRQ 195

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAK 276
            K      V L +   K LA                   FI+++   +     +      
Sbjct: 196 GKGNKDRVVPLGERACKWLARYLNHARPALARRYDSGHLFISHNGTGLARVTLTKMAGKA 255

Query: 277 ATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G      + H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 256 IRETGHLDKPGACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
 gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026]
          Length = 351

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 36/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR           A+ +          ++   +    TL  LI+ +        +
Sbjct: 24  KNGKRIR-KKFATKGEALAFENHTLQKVDSAPWLGEGKD-KRTLIDLITMWY---ERHGV 78

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
           A+ +    +          G     +   +   +    R            K +P +   
Sbjct: 79  ALRNGKKRKDAMTWAAECMGFPLATEFNAQLFTAYRAKRLEGHYARTNRVSKVSPKTMNL 138

Query: 136 FLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                  +F    R  E+ A NP  +V + +     +   T E++ +            L
Sbjct: 139 EHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTAEEIDRLLLECKRSKVSYL 198

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R +++       +     +    K     T+ L D  +  L  T    
Sbjct: 199 ELVVKICLATGARWNEAATLKSSQIAGGKVTFIKTKGKRNRTIPLDDELLAELPETKGAL 258

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
                               F++   +AG+   A    H +R   A+     G     L 
Sbjct: 259 F------------PKPCYNAFRSALERAGIELPAGQLTHVLRHTFASHFMMNGGNILVLQ 306

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 307 KILGHADITMTMRYAHFA 324


>gi|4099030|gb|AAD10295.1| integrase [Shigella phage SfX]
          Length = 386

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 107/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAPDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT  I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTGKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|307295376|ref|ZP_07575215.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306878879|gb|EFN10098.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 400

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 91/359 (25%), Gaps = 50/359 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K  +          R                 T +    + +++P  +  T+      + 
Sbjct: 20  KNSWQVDYADSSGKRRRKAFARKKAAEAW-LTTAAYQVTQGVHTPDSQSITVTKAADLWL 78

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQF 136
           K      L  ++  ++  +    II   GD    +IT        +      S   A + 
Sbjct: 79  KRGEREKLEASTLAAYGQHVRLHIIPLCGDRKLSQITRPMAEGWRDDLMEKLSRPMASRV 138

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQP 192
           L S+  +   A  + YVA N    V+  + K E  +               +  S     
Sbjct: 139 LRSLTAIVSEAQSRGYVAQNVVAGVKMRRAKREKPKVVIPTKADLKSVINAAKTSTEPMA 198

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-------------QNNIFSIKTQKTGTIITVELPD 239
                  +++GL  S+      + +                      +      T+ LP 
Sbjct: 199 YPLALIAVFAGLCASELRGLPWRCIDLKAGTVTVDQRADLKNVIGPPKSEAGYRTIPLPA 258

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKATKAGV----------- 282
             +  L    +       +     +     S          A    AG+           
Sbjct: 259 SAIAALTAWKLACPPTDQDLVFPSLAKRVMSHQYMNVNIMGAIQLAAGIADPVMKDGKPA 318

Query: 283 -----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                        + H  R  +A++  +       +    G  ++    +TY    D+ 
Sbjct: 319 LDKEQRPMMAQRHTLHDFRHAAASLWIEQRVNPKRVQKWMGHSSIQVTFDTYGHLFDQA 377


>gi|29377323|ref|NP_816477.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344789|gb|AAO82547.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 393

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 110/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHL---------- 217
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 218 -----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                             N+I  I        I  +      + L      K        
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKI 306

Query: 261 KQKMNATQ-FSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
              M+ +Q      K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMSRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 373

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 96/327 (29%), Gaps = 30/327 (9%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            R   G R +                   +  +  +++  ++    +  LI  Y      
Sbjct: 13  VRWREGGRQKSVRVRSFDVAKKVQHKKLTNRDENRHLDVKKEINYKMSDLIDRYWTHYGS 72

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSM 140
              +       +S  + I  + G    R++    ++   E+          +A++    M
Sbjct: 73  KKASA---DREKSIVEGIRSELGRKFVREVDGIAVQHWYENLTGKRGLADNTAVRHFNVM 129

Query: 141 RVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----------- 185
             + +        +  +  NP   +E  +      R  ++E++Q+ K+            
Sbjct: 130 HHMMEKASTIWAPETGIDRNPASLIEVRRPDDTRERYLSEEELQRMKTALDERILRKGTK 189

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDG 240
                  + RL     + +G+R ++  R     ++            K G    V +   
Sbjct: 190 DPNQTNRRMRLIVLIAVSTGMRSAEIHRLRWTDVRYGERLLAVRAKLKKGKERFVPMTSE 249

Query: 241 FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
             + +   P       I   K        +    F+    +A + +   H +R   A+  
Sbjct: 250 LAEEIRRYPTVIGQDRIFPPKGGPASKRQRLEGSFEDLLERANIHDFWFHDLRHTFASWY 309

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
              G   +EL    G   +   E Y K
Sbjct: 310 MMNGGDLYELAKLMGHANIKMTERYAK 336


>gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 26/273 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
               ++  S++          G  +  Y  I    +              ++   ++  +
Sbjct: 20  KKRYSTAKSYQDALRSFKCFCGREEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRI 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-----LA 195
           R ++  AV     A  P L            +     +  +           +       
Sbjct: 80  RHIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAF 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------------- 242
               L+ G+   D      + ++  I S   QK+G++I VE+P                 
Sbjct: 140 CLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTED 199

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
              L     G +T      +       F+   K  +   G++   +++ +R   AT   +
Sbjct: 200 SPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKILSESIGIHTRVTSYTIRHSFATTLKE 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                  +    G K++   + Y K     +L 
Sbjct: 260 QNVPIEMISELLGHKSIKTTQIYLKSFSLEKLS 292


>gi|256843101|ref|ZP_05548589.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256614521|gb|EEU19722.1| integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 407

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 106/355 (29%), Gaps = 53/355 (14%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
                    L     KR           T + L  +Y  S     LA  +    ++   +
Sbjct: 38  QVKKKAQLLLDEKIRKRLIDLQTGNTDITFEQLTDKYI-SVAKQQLAHTTWYRKKTTLQK 96

Query: 102 IIRKSGDFDYRK-ITTKHIRSGVES------RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           I R+ G     K IT++ I   ++S      R ++  +   + + +  +F   +R  Y++
Sbjct: 97  INREWGTKIIAKNITSQFINKYLDSLLYDNPRHYSNGTVNSYKSCISGVFDLGIRYGYIS 156

Query: 155 INPCLSVERPKRKTEGIRP-------WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLR 205
            NP   V+   +     R           ++  +  ++  + ++  L   F +L  +G+R
Sbjct: 157 KNPVNQVKITWKSQSKKRHEEIENKYLEDDEYAKILAYCDKHNRQDLKDLFIWLYNTGMR 216

Query: 206 CSDSCRAGVQHLQNNIFSIKT--------------------------QKTGTIITVELPD 239
           C ++     +++  +                                +       V LP 
Sbjct: 217 CGEAIALQKKNILQDKDGNYFARVEGTLIFIKGEKKLSERYRKTKNAKTFSGDRDVYLPP 276

Query: 240 GFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
              K+                         + +      K  A K  ++K+   H  R  
Sbjct: 277 EAKKIALDHCKGKKANDYIFTSKWYHNNYFSISSIDRMLKTIAKKEEIHKNLVTHIFRHT 336

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
             +  A+ G   + +    G       +  Y    ++++       R+ +  DS 
Sbjct: 337 HVSKLAEQGWPLNVIQHRVGHSNSTITQKIYLHITNKVK--NTAIERLKNFPDSQ 389


>gi|239815112|ref|YP_002944022.1| integrase family protein [Variovorax paradoxus S110]
 gi|239801689|gb|ACS18756.1| integrase family protein [Variovorax paradoxus S110]
          Length = 405

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 94/333 (28%), Gaps = 30/333 (9%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLIS 76
            G      R+                   +  A        E     + K PTT   LI 
Sbjct: 9   SGNWRAQVRRKG--VYASETFRRHKDAQEWALATERRIDLGEPATRSKVKDPTTFGDLID 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133
            +         A   R S     D +  K G    + +T + +    + R      P + 
Sbjct: 67  LHVTDMKEVLRAP--RRSKAFTLDALNTKLGKLKLKDLTRERLIQFGKDRAKEGAGPVTI 124

Query: 134 IQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  ++++             V    +A      +    +  E  R  T +++Q    
Sbjct: 125 SMDIGYIKLVVSHAAAVHGVRVPVEPIDLARIALKRLGLVGKGRERDRRPTLDELQALAD 184

Query: 185 FWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +++  S+  +       F + + +R  + CR   + +     ++  +           D 
Sbjct: 185 YFASNSRQIIPLGRIMRFAVATAMRQDEICRIRWEDIDAKTRTVIVRDRKDPRDKNGNDQ 244

Query: 241 FMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
            + LL +T                        N       F+    +  + +   H +R 
Sbjct: 245 KVPLLDVTGFDAWAILEEQKPFSGNSSLVFPYNGRSVGTAFRRACKELKIKDLKFHDLRH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +A+   +AG T  +     G K     + YT 
Sbjct: 305 EAASRLFEAGFTIEQAALVTGHKDWKMLKRYTH 337


>gi|169829609|ref|YP_001699767.1| tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994097|gb|ACA41637.1| Tyrosine recombinase xerC-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 395

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 104/381 (27%), Gaps = 46/381 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           P +      + + ++ +R       + RR +     ++            +   R     
Sbjct: 13  PEIYHYFNANKEKLWVYRHKYYDAANKRREKKKSGFKTEKAALKALLEVKAQTLRGETKY 72

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T+   +  + +S       + SR   E     Q+    G F  +++T    +  
Sbjct: 73  IENDNLTVGQWLDIWYESNQ-KKWKITSRKQREMAIRLQMKPLIGHFKLQQLTKAIYQKH 131

Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEGIRPWT 175
                 + + PS+        ++    AV +                            T
Sbjct: 132 YINELEKTYKPSTVRLLHNLFKIAINAAVEEEILLRNRFTKIAFDEATNVSNKADENYLT 191

Query: 176 KEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
            E++  F      +E          + Y+G+R  ++C    +++     +I  ++T    
Sbjct: 192 PEELGLFLKTAKETENITNYTFLLLIAYTGIRRGEACGLQWKNIDFKNNTITIERTRDQK 251

Query: 233 -----------ITVELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNA 266
                       T+++    +  L                        F      + ++ 
Sbjct: 252 GTRTPKTKNSLRTIKVEKSVLAQLEKYHTWCKATLFAFGKKIKDTSYVFVSYQTGEPISD 311

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +      +    KA +   + HG+R    T+  + G     +    G       E Y   
Sbjct: 312 SGLLYMTRRVIEKASLPEITLHGLRHTHCTVLLNKGVNVKVIAERLGNTPAMIYEVYGHV 371

Query: 326 ADRIRLGIKNSRRISSVVDSD 346
                L  +  +  S  + ++
Sbjct: 372 L--KELEEETVQIFSDSIGAN 390


>gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa]
          Length = 317

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 82/298 (27%), Gaps = 52/298 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLQTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F   FK    +AG+ K  + H +R   AT    +G     +    G   V     
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTVR 311


>gi|84496794|ref|ZP_00995648.1| putative phage integrase [Janibacter sp. HTCC2649]
 gi|84383562|gb|EAP99443.1| putative phage integrase [Janibacter sp. HTCC2649]
          Length = 394

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 103/358 (28%), Gaps = 48/358 (13%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIR---------LPYPHESTFIPAYMSA 50
           M+        V ++R R   I   FR    GR+                    +      
Sbjct: 1   MSSKK-----VYEKRERG--IREVFREYPDGRKESAGFEVRVGQKRVGGLIKGLKNAQKI 53

Query: 51  LTGSTPKREYIN--SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
              +          +P +   T+K +   +   +        +R  +E      +     
Sbjct: 54  REAAAADNHKGAFIAPSEGKATVKEMADRWLNGSKAAKWKPRTRAGYEGIVRHRLAPLHA 113

Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              + +T   + + + S       PS+       +    + AVR   +  NPC  V+RP 
Sbjct: 114 HAVKDVTPAVVDAFLASMLKEGLAPSTVRHVYHVLNQSLRLAVRDRLILANPCADVDRPG 173

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-------------SGLRCSDSCRA 212
              +      ++++++  +  ++    R A   L               +GLR S     
Sbjct: 174 LVRDKPAIPERDEVEKLLNALADLPHDRAAEWSLYAEVAAYAGLRAGEITGLRVSALLPL 233

Query: 213 GVQHLQNNIFS---------IKTQKTGTIITVELPDGFMK--LLAMTPIGKETFFINNDK 261
               L N   +             + G       P    +   L+M        F +   
Sbjct: 234 ENSLLVNETVTVISGSLSAGTPKSRAGKRRVPLPPSLSARLIALSMGKARDAYVFGDGTT 293

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
              +   +   F+  A   G+   + H +R F A++       +A ++    G    +
Sbjct: 294 PFRHGNFYRRVFRPAAAAVGLPTLTFHQLRHFYASVLLTNPNLSAVDIAKVLGHADAN 351


>gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602]
 gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602]
          Length = 332

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 78/316 (24%), Gaps = 38/316 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR        F     +         +     ++   TL  LI  +  +       
Sbjct: 21  KGKRIR------KKFATKGEAIAFEQHTITKPWQEEKEDNRTLLELIKAWYSAHGI---- 70

Query: 89  VNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSA 133
             +    E   D         G    R+   +      E R            K  P + 
Sbjct: 71  --TLKDGERRLDAMTHAYECMGQPLAREFDAQMFSRYREKRLSGDYARSNRVKKVAPRTI 128

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGS 190
              L   R +F    R      +  +   RP R  E    +  +D            + +
Sbjct: 129 NLELAYFRAVFNELGRLGEWKGDNPIKNVRPFRTEESEMAFLTKDQIGKLLEECAREKNN 188

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
                 +  L +G R S++       +     +    K     T+ + +   + L     
Sbjct: 189 DLVSIVKLCLSTGARWSEAEELNKNQVTKYKITYTKTKGRKNRTIPISEELYESLPEVKK 248

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
           G+                F    +    +    +  H +R   A+     G     L   
Sbjct: 249 GRLFKKC--------YGAFRYALERTDIELPAGQLTHVLRHTFASHFMMNGGNILVLQRV 300

Query: 311 YGWKTVDQAETYTKGA 326
            G   +     Y   A
Sbjct: 301 LGHTDIKMTMRYAHFA 316


>gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
 gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum
           DSM 5476]
          Length = 440

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/373 (9%), Positives = 91/373 (24%), Gaps = 63/373 (16%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            R P ++   +   G   +     +     +        +    +     + +    + P
Sbjct: 48  KRKPKWIPTHKKVKGNKTW----ANNMLPTIRKEWTEKLLQEATA-----SQQSASPSGP 98

Query: 65  RKKPTTLKWLISEYRKSA------HWGSLAV---NSRISFESYFDQ-IIRKSGDFDYR-- 112
                +    + ++ +                  ++   +E   +  I     +      
Sbjct: 99  SSAAISFVDFLYQWLEYKYKSATGRVMDSKPIELSTYSGYEQQLNNPIAPYFREHPVALC 158

Query: 113 KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +T + I +  E    +  P++   +   +     +AV +  +  NP   +   K +   
Sbjct: 159 DLTKQDILAFYEKELERVKPTTVKHYHALIHGALNYAVDKNLIPSNPADRIIISKPEPFK 218

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
              +  +          +G +  L      + GLR S+           N      + T 
Sbjct: 219 GDYY-LDSEVLNLFEVIKGHKIELVVLLTAFYGLRRSEVIGLKWSAFDFNHNCFSIRHTV 277

Query: 231 TI---------------------ITVELPDGFMKLL----------------AMTPIGKE 253
           T                       T  L     + L                A       
Sbjct: 278 TTCNVKGERVTIKKDKAKNKSSLRTYPLIPFLKERLLEAKKQQEENRKLCGRAYNKEYLG 337

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
              ++     +     S  F     K  + +   H +R   A++    G    ++    G
Sbjct: 338 YVCVDVIGNLIKPNYVSSTFGKLLAKNNLRHIRFHDLRHTCASLLLANGVPMEQVKEWLG 397

Query: 313 WKTVDQA-ETYTK 324
              +    + Y  
Sbjct: 398 HSEISTTVDIYGH 410


>gi|254931135|ref|ZP_05264494.1| integrase [Listeria monocytogenes HPB2262]
 gi|293582683|gb|EFF94715.1| integrase [Listeria monocytogenes HPB2262]
          Length = 397

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 113/375 (30%), Gaps = 61/375 (16%)

Query: 11  VTKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +    T+ G+  +Y           + I        T + A ++A      + E      
Sbjct: 4   IQSYITKSGERFFYQIYEGVDPKTRKPIFKKKRGFLTELDARLAAKNYEDNEGEENKIVD 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T   + +E+ K      L +++  ++ES F   I+   G +  + IT K  ++ + 
Sbjct: 64  YSKLTFLDVYNEWWK-LTSIGLKISTVATYESLFKNHILPVLGKWSIQSITKKDAQTFIT 122

Query: 125 SRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------- 168
                        + S+          +FK+A+  +YV  N    V  P+          
Sbjct: 123 DLMSLVNNPEIELSRSTVQNIKIKTAQVFKYAMEMDYVGKNAFEFVVVPRSFNDLYAMDD 182

Query: 169 --EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI--- 221
             +    W ++++    +++ E  +  +   F L  +SG R  +     +  +  +    
Sbjct: 183 EEQQRDFWYRDELLTMLNYFKEECENNVYMLFRLLVFSGARKGEILALKISDVNFDRSGI 242

Query: 222 -----------FSIKTQKTGTIITVELPDGFMKLLAMT-----------------PIGKE 253
                      + +   K      + L D  +  L                         
Sbjct: 243 HIRKTLFYKKGYHLLKTKNYKTRFIPLDDITIHELNKHIANLIDTTKILAAENIKFNNDN 302

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATY 311
             F  ++ +       +        K    +    H  R   A+     G  A ++ A  
Sbjct: 303 FLFPRSNGEPQRLAMPNDELNKLYKKHPDLLKLKIHSFRHSYASALFAEGKPAKKVQALL 362

Query: 312 GWKTVDQAE-TYTKG 325
           G K++ +   TYT  
Sbjct: 363 GHKSIKETMDTYTHV 377


>gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
 gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter
           algicola DG893]
          Length = 330

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 84/296 (28%), Gaps = 53/296 (17%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMR 141
               LA  +  ++  +  + IR  G      + +  + + +        +S      ++ 
Sbjct: 25  RMRGLAYATEKTYVFWIRRFIRFHGRKHPETMGSADVEAFLSHLVLQANASVATQRVALN 84

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            L  +  R+        L+ E  ++  +    ++ E+ +   +  +   + RL    +  
Sbjct: 85  ALI-FLYREFMGIPLDNLNYEAARKPAKLPTVFSPEEAKTTIN--NLEGEYRLIAMLIYG 141

Query: 202 SGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-- 257
           SGLR ++  R  V+ +   +    +++ K        LP   ++ L              
Sbjct: 142 SGLRINEVLRLRVKDVDFGMQQLVVRSGKGNKDRITLLPSSLIQSLTRQIEAALHQHSSD 201

Query: 258 -------------------------------------------NNDKQKMNATQFSIWFK 274
                                                         +  M        F+
Sbjct: 202 LAKGYGSVYLPAGLARKYPNASQEPGWQYVFPAAELSVDPRSGIRRRHHMIDRTVQKNFR 261

Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                AG+ K  ++H  R   AT   ++G     +    G   V   E YT    +
Sbjct: 262 IAIRSAGIRKPANSHTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317


>gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1]
          Length = 346

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 36/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR           A+ +          ++   +    TL  LI+ +        +
Sbjct: 24  KNGKRIR-KKFATKGEALAFENHTLQKVDAAPWLGEGKD-KRTLIDLITMWY---ERHGV 78

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSAIQ 135
           A+++    +          G     +   +   +    R            K +P +   
Sbjct: 79  ALSNGEKRKDAMTWAAECMGFPLATEFNAQLFTAYRAKRLDGHYARTNRVSKVSPKTMNL 138

Query: 136 FLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                  +F    R  E+ A NP  +V + +     +   T E++ +            L
Sbjct: 139 EHAYFLAMFNELKRIGEWSAPNPLENVRQYRTDETEMAFLTTEEIDRLLLECKRSKVKYL 198

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               +  L +G R +++       +     +    K     T+ L D  +  L  T    
Sbjct: 199 ELVVKICLATGARWNEAATLKSSQIAGGKVTFVKTKGKRNRTIPLDDELLSELPETKGAL 258

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
                               F++   +AG+   +    H +R   A+     G     L 
Sbjct: 259 F------------PKPCYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMNGGNILVLQ 306

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 307 KILGHADITMTMRYAHFA 324


>gi|183600875|ref|ZP_02962368.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827]
 gi|188019658|gb|EDU57698.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827]
          Length = 354

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 99/345 (28%), Gaps = 33/345 (9%)

Query: 2   TPSL-RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-----ST 55
           +P    LPP +        K  Y +R        + Y        A   A++        
Sbjct: 6   SPKNAHLPPNLYCR-----KGYYSYRN---PETGIEYGIGRNKAEAVNEAISANLFIYGK 57

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            +                 I  + +      L   +   ++    +I     +    +I 
Sbjct: 58  KESLINRMASNDAIKFHDWIDRFGEIILLRDLKKKTLDDYQGRLKRIKNSFNNVPLSEIK 117

Query: 116 TKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           TK I   + +       ++A    + ++ +F  A+    V  NP ++   P+ K    R 
Sbjct: 118 TKDIADYINNIVSDGNITTARLMRSILKDMFNEAMSDGVVDFNPVIATRVPRNKIARTRM 177

Query: 174 -WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
             +        +         ++ +  + +G R  D  +     + +    I+ +KTGT 
Sbjct: 178 SESDYIQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDVHDGFLWIEQEKTGTK 237

Query: 233 I-------TVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV 282
           I                 +L                QK +          F    +K+G+
Sbjct: 238 IAIPLTISNNIANKTLQSVLDRCKHELNGKEFVLVSQKGDMLADKTIGKAFSLARSKSGL 297

Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +      + H +R   A+       +        G K++D    Y
Sbjct: 298 SWEGSPPTFHEIR-SLASRVYGNEKSNEFANQLLGHKSMDMTRMY 341


>gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 417

 Score = 92.5 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 102/401 (25%), Gaps = 78/401 (19%)

Query: 9   PFVTKERTRHG--KIIYYFRK--GHGRRIRLPYPHESTFI-------------------P 45
            +   +  +HG  K  YY  +    G+R+       S                       
Sbjct: 14  RYREHDTRKHGIKKDRYYTIRYQRSGQRVEEGLGWASEGWTLDKAVATLAKLREAATTGE 73

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-----ISFESYFD 100
                               KK  T   +++ Y ++        N+R       +     
Sbjct: 74  GETRLQEKRKAAEAQKALKEKKNITFATILAGYLEAGTEKK---NTRVLAVQKGYGD--K 128

Query: 101 QIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-IN 156
            ++   G    R++T  H   I+  + +   +  +A   +   R  + WA ++E +   N
Sbjct: 129 WLLPDLGPLPIRQVTAGHLEQIQKQILAAGRSKQTAAHAIDLFRAAWNWAYKRELIEGRN 188

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           P   +ER +      R ++  ++Q        +            ++G R  +       
Sbjct: 189 PVTQMERIRPDGSRERFFSAAELQSLLGWLHRKDIHTYRITLCAAHTGARLGELAHLTWD 248

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------------ 263
            +      I    T + +   +P         + +                         
Sbjct: 249 RVNLPDRQINFIHTKSGVPRSVPMTPELHDMFSDLLMTMSSAKTSGIPLGTNYTPAGLAG 308

Query: 264 ----------------------MNATQFSIWFKAKA-----TKAGVNKSAHGVRKFSATI 296
                                    T F     A         A    + H +R  +AT+
Sbjct: 309 KIVFLTKARKPFFKEIEGRLRTDTPTAFRSALSALKLNEGHATAKTKLTFHCLRHTAATL 368

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
               G     +    GW T+   E Y+       R  ++  
Sbjct: 369 LLSNGVDPVTVQNIMGWSTLKMLERYSHAIPATKRKAMEAL 409


>gi|311111413|ref|ZP_07712810.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311111462|ref|ZP_07712859.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311066567|gb|EFQ46907.1| phage integrase [Lactobacillus gasseri MV-22]
 gi|311066616|gb|EFQ46956.1| phage integrase [Lactobacillus gasseri MV-22]
          Length = 367

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 111/357 (31%), Gaps = 37/357 (10%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            V +++       +Y ++      G+R  L      T   A  +    +    + I+   
Sbjct: 2   GVYQDKK---SKKWYVKRSWYDIDGKRHYLTRRGFKTKREAEKADNKLAVEIDDGIDVTE 58

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                      ++ K+   G++A N+ I +     +I    G    + I     +  +  
Sbjct: 59  NPI--FANYYDDWVKTYKKGNVAPNTLIEYNLEGKRIRTLLGATKIKNINRSKYQKVINE 116

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
             + H  ++  +   ++R   K A++   +  +   +++    K   ++    E      
Sbjct: 117 FGKDHAKNTVKKLHRAIRTCVKSAIQDGIITRDFTENIQLAFNKDHDLKVDYLEYDEIKL 176

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--------------HLQNNIFS 223
                 +  +            L +GLR S+      +               + +    
Sbjct: 177 LLNHLYNAANPNFPGSYMILLGLTTGLRESEMAGLKWEDLDFEDNTIKVRRSWVYSQKEY 236

Query: 224 IKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             T+   ++  + +PD  MK +        ++ F+        N+   +   +    +  
Sbjct: 237 GPTKNESSVRPIGVPDFIMKKIKELKINDPEKVFWSKARNGFPNSKSLNRTLRDNLAELK 296

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           + +     H +R     I   A  + +++    G  T     E Y +  ++ R  I 
Sbjct: 297 IKREGYHIHSLRHSQVAILLSADVSTYDIAQRLGHATTKTTEEIYAETFEKHRQKID 353


>gi|260577357|ref|ZP_05845328.1| integrase family protein [Rhodobacter sp. SW2]
 gi|259020430|gb|EEW23755.1| integrase family protein [Rhodobacter sp. SW2]
          Length = 367

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 88/347 (25%), Gaps = 36/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + K     G + +        G+R    +P        Y+  +        Y+       
Sbjct: 4   IRKRTLPSGLVRWQVDFTDQAGKRRSKLFPRRKD-ADVYLVKVRSLVANHTYLADS--DS 60

Query: 69  TTLKWLISEYRKSAHWG-----SLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHI 119
           TT+      +             +  ++   +  Y    +       GD    ++T +H+
Sbjct: 61  TTVAGAAQSWLDHCEVRCKTGRRMERSTLRGYSDYVRLHLTAPVVGIGDKLIAQLTRRHV 120

Query: 120 RSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +       S     + L+ ++++   A+    +  N    V   K      +    
Sbjct: 121 NELRDRLLLNGRSEHLTRRALSVLKLILDHAIDNGQLFTNAAQGVRVIKSSRIEHKAPVP 180

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTII 233
                     +     +         GLR S+      Q +  +       +       +
Sbjct: 181 SKEAIRALIEAADEDFKPHLIVSALGGLRASELRGLRWQDVDFDKGFLHIRQRADAYNQM 240

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------------SIWFKAKAT 278
                    + +   P+          +   +                      F+    
Sbjct: 241 GEPKSRAGFRDIPAGPMVLNALRRWKLRCPKSELGLVFPAPQGGILQHTRTQDRFRKLLE 300

Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           K  V    H +R F+ ++  + G +  E+M   G  ++      Y  
Sbjct: 301 KVEVTMRWHDLRHFAVSLWIEQGFSIKEIMTFAGHSSIQMTMERYGH 347


>gi|238563366|ref|ZP_00438961.2| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
 gi|238520806|gb|EEP84263.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei GB8 horse 4]
          Length = 385

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 86/334 (25%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R       Y      G  +       S    A                   K       
Sbjct: 21  KRNNSPNWYYRLTPPGGGPVVQGSTGTSNKAHAQELYDRLKVELWNQAKLGHKPRYLWND 80

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
            +  Y        L+  S  + +++   +           I    + +   +++  P   
Sbjct: 81  AVVRYVGDRE--GLS--SLETSKTHLRWLDPHLSGVALADIDRDRVDAIAHAKRCEPRVV 136

Query: 132 ----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           +  + +  +  +   AV  E++   P L   +   K        
Sbjct: 137 RTRNGPKPIGGTIGEGTVRRVIGVLMAVLHAAVEWEWLDRAPVLKRRKTTPKRVRWITPA 196

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL  S    A      +   +   +    
Sbjct: 197 QAERLLAELPAHLSDMARFSLETGLRRSNVTGLEWSQVDLARRVAWIHPDQAKARKAITV 256

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++    D   + L+     +    +   +        +  ++    +AG+ +   H +R
Sbjct: 257 PLSDTAVDVLRRQLSKRRAAEHIERVFVYRGSAIGQPNTAAWRKALKRAGIRDFRWHDLR 316

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 317 HTWASWHVQRGTPLQVLKELGGWETLEMVQRYAH 350


>gi|254516458|ref|ZP_05128517.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674881|gb|EED31248.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 399

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 78/302 (25%), Gaps = 33/302 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
                  + I     K  T K    ++ +         +   + E      +I   G   
Sbjct: 67  ARFADHDKQIEQRSAKTPTFKAFADQWMEENRI-GWKPSYINTLEHSLSKHVIPTFGSVP 125

Query: 111 YRKITTKHIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              I+ + I +        P                +  +R + + A  +     NP   
Sbjct: 126 MSAISKEDILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQVMREASERFG-FDNPYQG 184

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  K     + P+T ++++       E   P        ++G+R  +      +++   
Sbjct: 185 IKLLKVPRTKVEPFTLDEVKAVLDGVREDFHPY--MTVRFFTGMRTGEIHGLKWKYIDFK 242

Query: 221 IFSIKTQKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
              I  +++             +   + + D     L           +           
Sbjct: 243 QRMILVRESYVAGAMTDTKTEESARDIPMSDEVYAALKEQHKRTGKLDLVFCSSSGEPLS 302

Query: 269 FSIWFKA----KATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +   K           + K   +  R  +AT+   AG     +    G        + Y
Sbjct: 303 INNVCKRVWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQMLGHSDSAITHKRY 362

Query: 323 TK 324
            +
Sbjct: 363 AR 364


>gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1]
 gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1]
          Length = 338

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 75/304 (24%), Gaps = 49/304 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R+       A+ +  ++  +  + I   G    R +    I + +         A
Sbjct: 23  LLDQLREHIRVKHYALRTERTYVEWVRRYILFHGKRHPRDMGALEIEAFLSHLALERGVA 82

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                  +    +  ++   A++     E    KT    P      +  +          
Sbjct: 83  SATQNQAKAALLFLYKEVLRAVDLPWLTEVVAAKTSRRLPVVLTQREARELLMQLHGAHW 142

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------------- 238
           LA   L  SGLR  +  R  V+ ++     +  ++                         
Sbjct: 143 LAASLLYGSGLRLLECLRLRVKDVEFERRELVVRQGKGSKDRVTVLPENLLLPLRNQLAQ 202

Query: 239 ---------------DGFMKLLAMTPIGKETFFINNDKQKMN-----------------A 266
                                LA+        +                           
Sbjct: 203 ARALHERDLAAGRGAVWLPDALAVKFPRAARAWGWQWVFPSRVLSVDPRSGVERRHHLAE 262

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     A +AG++K  S H +R   AT    AG     +    G   V     YT 
Sbjct: 263 QGLQRAVSLAARRAGIDKPCSPHVLRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTH 322

Query: 325 GADR 328
             +R
Sbjct: 323 VLNR 326


>gi|189183655|ref|YP_001937440.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189184721|ref|YP_001938506.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180426|dbj|BAG40206.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189181492|dbj|BAG41272.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 372

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 93/294 (31%), Gaps = 16/294 (5%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR--ISFES 97
           +   +             +E     +    T K L   Y +        + +     +  
Sbjct: 54  DPRAVKRQQKIEENENRIKERER--KANDITFKELCYRYIEEYA----KIYTINWEEYTD 107

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                 +        +I    I+            ++A   L ++R +F  A++   +  
Sbjct: 108 RVHTYAQSLYGKKISQIRMSDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIEN 167

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGV 214
           NP L +E+ K +    R    +  +       E +   R      LY+G R S+      
Sbjct: 168 NPTLGIEQHKLQARERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEW 227

Query: 215 QHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFS 270
            ++      + I   K G    + L D  M++L       E+ ++       +    + +
Sbjct: 228 DNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSATSESGHLERPN 287

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             +     KAG+     H +R+  A+   D GA+   +       + +   +YT
Sbjct: 288 NSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT 341


>gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae]
          Length = 318

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 31/287 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR---KHTPSS 132
           S      +  S+ +  S    +    G      FD+  +T   I+  ++        P++
Sbjct: 26  SYLLRLRSKKSQKTMRSCLTTVSSMFGCNEPLHFDWSSLTRDMIQVVLQRLLNEHKAPNT 85

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSE 188
               L +++ + + A     +  +    V+  KR         R     +++   +F   
Sbjct: 86  INLILCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECTEIKHLFTFLDI 145

Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFM 242
            +     +       +   GLR S+     + H+   N       K        +P    
Sbjct: 146 QTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPPETA 205

Query: 243 KLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK-SAHGVR 290
           K +++               ++                    K   TK  +   + H +R
Sbjct: 206 KRMSLWVDTVRGDHSGPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKLFTPHDLR 265

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           +  A++  + G     +    G  +V   + Y K     RL      
Sbjct: 266 RSYASLLLENGEDILTVKEALGHASVVTTQQYDKR-SIKRLEAAALN 311


>gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 283

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 85/269 (31%), Gaps = 20/269 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----TKHIRSGVESR---- 126
           + E+           ++  ++    +  ++   +   R+        HIR+         
Sbjct: 1   MQEFHNWLLGKGKMESTAKTYIRAVENFLKWYQESYDREFDGKVLPLHIRNYRSYLMTVK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKS 184
           K    +    L++++    + V +  +  NP L       +  G        +D  + + 
Sbjct: 61  KLNAKTINNNLSAIKSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEE 120

Query: 185 F--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  ++    F  L Y+G+R S+ C   +  +  +   I   K G    + L     
Sbjct: 121 AVVHYGSARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVR 180

Query: 243 KLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
           + +      +  +  ++          K++ +      K     A +     H +R +  
Sbjct: 181 EAIDNWLKERGKYKYSHLDYLFISERGKLDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFC 240

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
             + + G T  E+ A  G   +   + Y 
Sbjct: 241 KRALEKGFTITEVAALAGHSRITTTQIYI 269


>gi|124514645|gb|EAY56157.1| putative phage integrase [Leptospirillum rubarum]
 gi|206602352|gb|EDZ38833.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 345

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 96/333 (28%), Gaps = 28/333 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R         K    R+            A+ + +     +  +++    + TTL   +
Sbjct: 6   KRSSNWRAIVTKKGFGRLT-KTFDTKAEAEAWAAVVESEMARGVFVSRKEAENTTLSEAL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y +          S   +   +    +  G      + +  I    + R    + +  
Sbjct: 65  DRYDREVTINKKNPRSERIYAKTWK---KAFGSRSLASLNSTDIAKFRDDRLKTVSANMV 121

Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              L  +  LF  A+++  +   +NP   + +PK      R     ++    +       
Sbjct: 122 RLELALLSHLFTIAIKEWGMTGLVNPVGQIRKPKLPRGRDRRLMPGELDMIAAHTESKVL 181

Query: 192 PRLAFEFLLYSGL------RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  +  +G          D      + +       K    G    V L  G +++L
Sbjct: 182 ADAIRFAVETAGRREEISRMTWDLVNLKKKTVTLVNTKDKIHSDGEKRIVPLSPGALRIL 241

Query: 246 AMTPIGKETFFINNDKQKMNATQFS------IWFKAKATKAG--------VNKSAHGVRK 291
           +  P   +      +   +              ++ +  + G        V+ + H +R 
Sbjct: 242 SELPRRFDGRVWGVEPHSITRAFIRAKTRARKAYEKECEEKGTKPDPGFLVDLTFHDLRH 301

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +   + G    ++ A  G KT+   + YT 
Sbjct: 302 EATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 334


>gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13]
 gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13]
 gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 26/273 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
               ++  S++          G  +  Y  I    +              ++   ++  +
Sbjct: 20  KKRYSTAKSYQDALRSFKCFCGREEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRI 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-----LA 195
           R ++  AV     A  P L            +     +  +           +       
Sbjct: 80  RHIYNLAVEVGEAAYIPHLFKHVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAF 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------------- 242
               L+ G+   D      + ++  I S   QK+G++I VE+P                 
Sbjct: 140 CLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTED 199

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
              L     G +T      +       F+   K  +   G++   +++ +R   AT   +
Sbjct: 200 SPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKILSESIGIHTRVTSYTIRHSFATTLKE 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                  +    G K++   + Y K     +L 
Sbjct: 260 QNVPIEMISELLGHKSIKTTQIYLKSFSLEKLS 292


>gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4]
 gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4]
          Length = 412

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 76/257 (29%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           D   ++IT   I       + T              
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNLSDISIKEITPMFITDFELYLRTTCKCGFNTTAKFMQF 190

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       T+++++          +    R  F 
Sbjct: 191 FKRIILIARNNGILIGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEQVRDVFI 250

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F  +SGL   D       +++ +        T    T    +  +  +    + K    +
Sbjct: 251 FSCFSGLAYVDVANLKEDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILEKYKGKL 310

Query: 258 NNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
            + K    ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 311 PDGKVLPIISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPIETVSKMLG 370

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 371 HTNIETTQIYARITNNK 387


>gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952]
 gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952]
          Length = 325

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 77/291 (26%), Gaps = 46/291 (15%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR---KHTPSSAIQF 136
               ++  +    + +                  +T K IR  +  +       +     
Sbjct: 18  KARGISQKTIKKHQKFLKLFFDFLKKEQIYFVEDVTPKSIRQFMLMKLEEGCAETYVNSH 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------------- 179
           L S+R  FK+ V ++Y+  +    V     K   +   T  DM                 
Sbjct: 78  LRSIRAYFKYCVDEDYIRYDRNPCVRVKWVKERKVIIQTFNDMEIKEMLRVAKKLTFFKP 137

Query: 180 ------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                            +  L    L+ +GLR ++       H+ N    ++  K     
Sbjct: 138 QKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVENGKGKKDR 197

Query: 234 TVELPD-GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK--------AKATKAG--- 281
            V      + + +    +    F  N  +   N    +   K            K G   
Sbjct: 198 IVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQC 257

Query: 282 -----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                +  S H  R + A      G   + +    G  ++   E Y +  +
Sbjct: 258 KIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLN 308


>gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 377

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 100/357 (28%), Gaps = 52/357 (14%)

Query: 15  RTRHGKIIYYFRKG-HGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSPRKKPTT 70
           R R          G   +  ++           + A  +          +    ++   T
Sbjct: 5   RKRGNTYQIRVSCGYDTKGEQITQTMSWKPPEGMTAKQAEKEVQRQAVLFEERCQQGQVT 64

Query: 71  ----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----- 121
                +    E+ ++    +L   S    +   +++    G     KI  +HI+      
Sbjct: 65  TNVKFEAFAEEWLETYAKLNLRNTSYERMKQLRNRVYPAIGHMRMDKIKVRHIQQFVYDL 124

Query: 122 ------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +  +  + +  L+ +  +F +AV+ E +  NPC  V  PK + +    +T
Sbjct: 125 AVNGKSFKNGKPLSRKTVVHHLSFISDVFSYAVKMELLTDNPCRRVTVPKGEKKEKEIYT 184

Query: 176 KEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------ 222
            E ++Q  +   +   + R  F   +YSG R  +      + +  +              
Sbjct: 185 LEQVEQLFNLLEDAPLKYRTFFTLAIYSGFRRGELLGLEWKDIDWDNCVISVKRTSNYTA 244

Query: 223 -------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                              D   + +       +  F+  D + 
Sbjct: 245 EKGIYTDTTKTKKSQRSLKFPMVVMDLLRAFKAEQDEERERIGDKWQDYDRLFVKWDGRP 304

Query: 264 MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           MN      WF     K        H +R F A+   + G  A  +    G   +   
Sbjct: 305 MNNNTPYFWFNEFCEKNNFPFRDIHSLRHFYASALINEGVDAAAVSGALGHSVISTT 361


>gi|282861525|ref|ZP_06270589.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282563341|gb|EFB68879.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 435

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 114/396 (28%), Gaps = 70/396 (17%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + G+     Y       R R+     +      ++ LT                 ++
Sbjct: 22  YQRKDGRWEAAGYVLAPGNTRKRVRVYGTT--RTEALAKLTEKIATSNRGVPVPSAQGSV 79

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              ++ + ++     L  N+   + +  +  +I   G     K+T K +R+ +   +   
Sbjct: 80  SAYLTYWLEAVAVHQLRENTHTRYTTCVNQHLIPGLGKKKLAKLTAKDVRTWLNQLRTTC 139

Query: 129 ---------------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
                                      +P +     + ++   + AVR+E +  N   +V
Sbjct: 140 QCSVRAIDAHRDQPRCCAAGTCCSKRLSPLTLAYIHSVLKSALEHAVREEEITRNVARNV 199

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                +     P T ++ +QF +      +    +E  L +GLR  +      + L  + 
Sbjct: 200 RTGTPRPRRFEPLTADEARQFLAAV-RNDRLFALYELALRAGLRKGELLGLQWKDLDLHN 258

Query: 222 FS-------------------------------IKTQKTGTIITVELPDGFMKLLAMTPI 250
            +                                            + +G  K  A    
Sbjct: 259 GTASIRRTLQRTQTGGLTALPTKTRASERRIALPSECIHSFKEHRAVQEGERKAAAEGWK 318

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309
                F  +    ++    +  F     +AG+ +   H +R  +AT+  + G     +  
Sbjct: 319 DNGLVFRTSAGGPIDPANLNRSFHTLLERAGLRRIRFHDLRHSTATLLLEQGVELVVIKE 378

Query: 310 TYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
             G   +      Y     R+RL  +    +SS + 
Sbjct: 379 LLGHAHIGVTATVYAHV--RLRLQRQAVETLSSTLA 412


>gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2]
 gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2]
 gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2]
          Length = 410

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 75/258 (29%), Gaps = 19/258 (7%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D    +IT   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNISDIAINEITPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-LIARNNGILVGDPFANYKIRLEKVDRGYLTEDEIKIILKKKMVSERLENVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            F  ++GL   D       +++ +        T    T    +  +  +    + K    
Sbjct: 248 IFSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKGK 307

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
                    ++  + + + K  A   G+ K  + H  R   AT +    G     +    
Sbjct: 308 LPNGKILPVISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPVETVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G   ++  + Y +  +  
Sbjct: 368 GHTNIETTQIYARITNNK 385


>gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM
           16992]
          Length = 276

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 79/266 (29%), Gaps = 13/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++ KS      + ++               G      +TT  + S +  +   P +  
Sbjct: 16  VEDWVKSLIASGYSEDTVRCRRYKLTHAAIGLGKSPV-DVTTGDLVSWMAGQHWKPETLK 74

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +  ++   F    R      NP   + + KR     RP   + +    +   E     L
Sbjct: 75  AYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPCPDKYILAALAKADETET--L 132

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                   GLR  +      + + ++      I   K      V LPD   + +      
Sbjct: 133 MLRLAAECGLRRGEIAGVNSRDVMDDLLGKSLIVRGKGDKQRIVPLPDDLAEAIESCGGW 192

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                     ++      S   K  +        AH +R   AT +  A    + +    
Sbjct: 193 LFPGRWQGHVEE------SYVGKRISRLLPEGYGAHSLRHRYATATYAATHDLYLVARLL 246

Query: 312 GWKTVDQAETYTKGAD-RIRLGIKNS 336
           G  +V+  + Y    D R+R G+   
Sbjct: 247 GHASVETTQIYVAMPDARLRAGMAAV 272


>gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
 gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565]
          Length = 536

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 80/288 (27%), Gaps = 26/288 (9%)

Query: 64  PRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKH 118
           P     ++  + I+EY     +   +               +                  
Sbjct: 232 PESGSPSISDIRINEYLNHLAYRRYSHAYIKGRRYILTYFYKIIEKENQEHPLTLEDIDK 291

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTK 176
                   K   ++  ++L  +RV  ++AV + +   +   ++  PK             
Sbjct: 292 YIEYYTINKVQRNTLKEYLCCIRVYLRYAVEKGWCITDLDKALITPKVYSEENLPSFLPW 351

Query: 177 EDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             +Q+      E      S+    F  L   GLRCS+     +  +      +  ++   
Sbjct: 352 NKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKISDIDWRKEQVYIKRAKN 411

Query: 232 IIT------VELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKA 280
                      + +  +  L              F      + ++ T  +         +
Sbjct: 412 CRPQVLPLLHNVGEAIIAYLKQGRPNDIGSDSLFFCTPAPIRPISCTAIASVVYRYLKSS 471

Query: 281 GVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            ++      H +R   AT   + G T  ++    G K+++    Y K 
Sbjct: 472 EMDVRHKGPHCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAKV 519


>gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase
 gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis]
 gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 368

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 104/352 (29%), Gaps = 40/352 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F    G RIR      +      +        + +   + + +  +   LIS Y  S   
Sbjct: 19  FDPITGERIRTRPVAST--RKEALELEAKLRREFQEERARKSRSVSFPTLISIYLASCEI 76

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
                N   + +      I       D +KIT + I    +    T     S    +TS+
Sbjct: 77  -DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSL 135

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             +F  AV +E +  NPC +V+R     + ++ W  E+ ++F S   +     +  +   
Sbjct: 136 SKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVA 195

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMK 243
             +GLRC +      + +   +  I   K+ T                   V +    +K
Sbjct: 196 FLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLK 255

Query: 244 LLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
           LL                    +T+             FS   K     + +     H  
Sbjct: 256 LLERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDF 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339
           R     +    G     +    G  +V    + Y     ++ +        +
Sbjct: 316 RHSHVALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDL 367


>gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 301

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 33/293 (11%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------- 110
           R+      K   T++  I     +     L   +   + S     I      D       
Sbjct: 2   RKATGISEKGDQTIQDFIHA-LTTHE--DLNPKTLKEYASDLKHFIGWFETADHQEEEVL 58

Query: 111 --YRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                + T  +    E+     K  P++  + L +++  F+WAV +     NP   V+  
Sbjct: 59  FRIEDVATPTLTRYRETAQKVMKLKPATINRRLITLKRFFEWAVSE----SNPSKPVKLV 114

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             +    R  T ++     +    G   + +     + ++GLR  + C      +Q    
Sbjct: 115 PEEKISPRQMTDKEEAALIAASEHGGSLRDQTILILMFHTGLRTMEVCDLAPGDIQIGKR 174

Query: 223 S----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWF 273
                +++ K      V L       L        +             ++         
Sbjct: 175 RGQLTVRSGKRNKQREVPLNATCRAALEKYLAVHPSDSPYLFPSEKTGDRLTERALRHLI 234

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +     A +   SAH +R     + A+     H L    G  ++D    Y K 
Sbjct: 235 QKYMKSARLKGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKA 286


>gi|154503547|ref|ZP_02040607.1| hypothetical protein RUMGNA_01371 [Ruminococcus gnavus ATCC 29149]
 gi|260589940|ref|ZP_05855853.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
 gi|153795647|gb|EDN78067.1| hypothetical protein RUMGNA_01371 [Ruminococcus gnavus ATCC 29149]
 gi|260539747|gb|EEX20316.1| site-specific recombinase, phage integrase family [Blautia hansenii
           DSM 20583]
          Length = 393

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 106/341 (31%), Gaps = 39/341 (11%)

Query: 16  TRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            R     YYFR         G++I+      ST   A            + +   +K+P 
Sbjct: 7   KRANNGTYYFRANLGYDSVTGKQIQKYRSGFSTKKEARAEYSKLIIAAEDELAMEKKQP- 65

Query: 70  TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
           + K  I E Y        +  ++  +  +  ++  +        +I   H+++       
Sbjct: 66  SFKQFIEEIYLPWYK-TQVKESTYRNRLNTIEKHFKFFYRKKVNEIEPIHVQTWQLKLAK 124

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++P+        + + F  A+       NP   V   K K   +  WT E+ Q+  S  
Sbjct: 125 DYSPNYVRIIQGMLSLAFDRAIILGLAKKNPARMVGNIKYKKVKVDFWTLEEFQKVISLL 184

Query: 187 SEGSQP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIFSIK 225
            +G      L   F L   +GLR  ++       +                  N    + 
Sbjct: 185 YKGDYYEHYLFICFWLLFTTGLRIGEAAALQWDDIDFESGLLSVTKTLYYKSMNEYKFVD 244

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATK 279
            + + +I TV L +  ++ L      ++    + +          +        +  A  
Sbjct: 245 PKTSASIRTVVLDEDTIRELKDWREVQKKVLKDCNFVLSYSGIPTSKHTLPRALEKLAGL 304

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           AGV++   H +R     +    G     +    G + +   
Sbjct: 305 AGVHRIKIHALRHSHVALLISMGVNPLIVKDRLGHEKIQTT 345


>gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
 gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis
           IBL 4222]
          Length = 323

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 44/291 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +  +        L+  +  S++         + R+    D  K+   HIR+ ++  +   
Sbjct: 8   VENFLLHCDAKHLSRKTIRSYDQTLKLFTSYLERELKITDVDKVKPLHIRTYIKYLRERG 67

Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                       ++   +L +++V F +   +E +A NP  ++E
Sbjct: 68  KYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIE 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--H 216
             K + +     + +++++           G +  +  + +L +G+R  + C    +   
Sbjct: 128 SIKPQRKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDLD 187

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFS 270
           ++N    I   K      V   +     L      ++ F                   F 
Sbjct: 188 IKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAEYLFPTIRGTMLNVNNFE 247

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              ++   K GV+ + H +R   A      G     L    G  +V+  + 
Sbjct: 248 ASIRSIGKKVGVHFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQR 298


>gi|149191720|ref|ZP_01869961.1| Site-specific recombinase XerD-like protein [Vibrio shilonii AK1]
 gi|148834460|gb|EDL51456.1| Site-specific recombinase XerD-like protein [Vibrio shilonii AK1]
          Length = 413

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 100/362 (27%), Gaps = 44/362 (12%)

Query: 7   LPPFVTKERTRH-GKIIYYFR---KGHGRRIRLPYPHE---------STFIPAYMSALTG 53
           LP  V     +  G + + FR      G++  +                        L G
Sbjct: 39  LPVGVRCLVGKGKGSVRFIFRFTSPISGKKSSIGLGRACDVDLITLRKKAKEYRQQILEG 98

Query: 54  STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
             PK E          TL+      Y            +     + F             
Sbjct: 99  IDPKIERDTEKTDSSMTLERFFETVYLPLQKQR----RTWKDDVARFRHAKSIF-HVPIN 153

Query: 113 KITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +++  HI       +          +  ++  + L  ++ + + A +    A      V 
Sbjct: 154 ELSAAHIVKIQMEMQGAISKTTGKPYAVATINRVLALLKTVNRQAYKLMD-APLVADKVS 212

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             K        +T+  +++F       E          L  +GLR  +        +   
Sbjct: 213 LLKEDNVRTGYFTEAQLKEFIGHALNHEDKSIGAYLIILFLTGLRDKELRLRLRSDISWE 272

Query: 221 IFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKA 277
             +  I   K G+   + L D  + +L   P      ++   ++K          FKA  
Sbjct: 273 EKTLTIPHTKNGSSHVIYLSDYMLDILRSVPHVANNPYLFPGRKKGKPVGQPRHAFKAIK 332

Query: 278 TKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328
            K G+          + H  R    ++ A  G + H++        +     Y+K    R
Sbjct: 333 AKMGLPDIPGDKANLTLHSARHTVGSLLASQGVSLHDIAKQLNHADLSSTRRYSKLTVGR 392

Query: 329 IR 330
            R
Sbjct: 393 RR 394


>gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208]
          Length = 75

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           F    K  A ++G+ K  + H +R   AT   + GA    +    G   +   + YT  
Sbjct: 1   FWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 59


>gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
 gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri 224-1]
          Length = 139

 Score = 92.5 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
             D     L          F+NN  QK+         +    KAGV      H +R   A
Sbjct: 33  YRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVHPHMLRHSFA 92

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T   + GA    +    G +++   + YT  
Sbjct: 93  TEMLNNGADLRSVQELLGHESLSTTQIYTHV 123


>gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 99/276 (35%), Gaps = 16/276 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVES 125
           T    + EY KS     + + +     S   +    +    +R++T  ++        + 
Sbjct: 104 TFHDFVKEYMKSYS-RRIEMGTFKHHLSCMKKFKAYNELLQFRELTPDYLSDYLIYMKKE 162

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +T  +A + ++++++    A R+ Y+  NP       KR    +   T+E++ QF   
Sbjct: 163 LGNTEITAQRNMSTIKIYVTAAYRKGYIEENPFQEF-HIKRIKSDVDYLTEEELMQFVHL 221

Query: 186 WSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVEL 237
           + + + P         F F+ ++ +  +D+    ++ + NN   +     +      +++
Sbjct: 222 YYQRTLPEKLQLTLAFFLFMCFTSMHITDARMLCIEQVNNNVLTYYRVKNRNCKPEPIKI 281

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
           P     L  +    ++       +        +   KA A + G+NK  SA   R   AT
Sbjct: 282 PMPIPALKLLEEWAEDREEGRLFRNVQCDQVVNRQLKAIAKELGINKKISAKTGRHTFAT 341

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           I          L    G   + +   Y    D  + 
Sbjct: 342 IYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377


>gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R]
          Length = 409

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  + GL  SD      +++Q +        T         D  + LL +  +  + + 
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIIT--KRVKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13]
 gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13]
          Length = 310

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 27/292 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
            Y           ++  S+           G  +  Y  I  + +              +
Sbjct: 12  AYIAHLREVG-RYSTAKSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRN 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGS 190
           +   ++  +R ++  AV    V+  P L            +     + ++          
Sbjct: 71  TVSTYMRRIRHIYNLAVEAGEVSYIPNLFKGVFTGVESKRKKALPLDSLRSLMGTPRVEP 130

Query: 191 QPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + R           +SG+   D      +++++ + S   QK+G+ I VE+P     LL 
Sbjct: 131 EMRRTQLCFCLMFSFSGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLD 190

Query: 247 MTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGV--NKSAHGVR 290
              +  +                             F+   ++ A   GV    +++ +R
Sbjct: 191 ELAVCTDKDSPYLFPFLSGKKTGEAAYAEYNGALLRFNCDLRSLAETCGVGEPVTSYTIR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AT   +       +    G  ++   + Y K     RL   N     SV
Sbjct: 251 HSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 409

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  + GL  SD      +++Q +        T         D  + LL +  +  + + 
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIIT--KRVKTNTDVNVPLLDIPKMILKKYK 305

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 306 GKLPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 365

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 366 MLGHTNIETTQIYARITNSK 385


>gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176]
 gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176]
          Length = 411

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/392 (9%), Positives = 95/392 (24%), Gaps = 74/392 (18%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y +    GRR  +   + +  +         +  + + ++       T+ ++   Y 
Sbjct: 25  RYSYCYTDPLGRRKYI---YANDLVTLREKEAELTKNQLDGLDIYIAGKATVNFVFDRYM 81

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           K     +L   +R ++   +D+      G+     I    +              I  L 
Sbjct: 82  KLKA--NLRQTTRSNYLYMYDRFVRNTFGNKKIADIRFSDVLQFYNCLLQQQEMQINTLE 139

Query: 139 SMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  L +            R            +   + +      T    + F    +  
Sbjct: 140 SIHTLLRPTFQLAVRDGIIRNNPTDGVLAEVKKNSDQHSGIRHALTVAQQRAFMEHVANH 199

Query: 190 SQPRLAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSI---------------------- 224
                 +      L +G R  ++     + +      I                      
Sbjct: 200 PVYFHWWPLFTILLGTGCRIGEALGLRWEDIDCENRMIHINHSLVYYPVGESRTSVQHIS 259

Query: 225 --------KTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFS 270
                   +T      +         + L                F N      N    +
Sbjct: 260 KPKTKAGERTIPMLDSVQDAFEMLREEQLENGWNDVEIDGMHGFIFCNRFGNVPNPQSVN 319

Query: 271 IWFKAKA---------------TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313
              K                   +A +  + SAH +R    T   +       + +  G 
Sbjct: 320 RAIKRIVSDYNATEEISAKREHREAILLPDFSAHHLRHTFCTRLCEQETNLKVIQSVMGH 379

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           K +      Y +  +  +   ++  R+++  +
Sbjct: 380 KDIKTTMDVYAEATEEKK--QESFERLAATWN 409


>gi|306830631|ref|ZP_07463796.1| probable phage integrase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427139|gb|EFM30246.1| probable phage integrase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 386

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 106/374 (28%), Gaps = 55/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T+ GK  YY R+    HG++  +      T   A  +           
Sbjct: 5   KTKYP-NIFTYETKKGK-RYYVRRKFKLHGKQTEVSASGLKTVAEARQALAEIENKIANG 62

Query: 61  INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
              PR K  T+      Y       G  A ++ ++  S+++    ++ G    + I    
Sbjct: 63  DYDPR-KNMTVNDYWQIYSENRIKTGRWAPDTVMTKTSWYNHHFSKQFGATLLKDIKRTK 121

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGI 171
             + + S  ++ S A   +  +  LF+  V    V      +        +      +  
Sbjct: 122 YEAYISSLLNSYSRA--TVIQINALFEAMVTDAVVNGYLDKNPILKIYIGKSNIPTKKKR 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +       +     S          + GLR S+        L+      +     +
Sbjct: 180 LSLEEFRSWDECARKILSSYDYTMARLTYF-GLRRSEVLGIKFSSLKLVNGRFRIFLDES 238

Query: 232 I----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQ------------- 262
                              V L +    LL    +        +++              
Sbjct: 239 RTERRPEGGRMKTRTSKRYVLLDEETTDLLQKAMMFARQIAKESNRILGQNDFIFVDEGA 298

Query: 263 --------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                    +     +  FK  + ++ ++ + H +R F AT    AG +   + A  G  
Sbjct: 299 NLKKRRGEPIKYAHIATIFKKVSAESKIHATPHMMRHFFATQGQIAGVSIEHMAAALGHS 358

Query: 315 TVDQAETYTKGADR 328
           T    + YT   D 
Sbjct: 359 TSYMTQQYTHIKDE 372


>gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6]
 gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6]
          Length = 411

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 102/298 (34%), Gaps = 25/298 (8%)

Query: 70  TLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           TL  +       Y K    G  A  +   +   +  +           D   +++T   I
Sbjct: 108 TLMQVFRRHNENYEKQVEAGMKAKGTLEKYRVVYKHLQEFLDIRYHVKDIALKELTPAFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +    ++   ++  +R +   A+  E++  +P    E  K++       T
Sbjct: 168 SDFEMFLRTDKHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLT 226

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           K++++       + ++    R  + F  ++GL  +D      ++++      +       
Sbjct: 227 KDEIRLLMEGKLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRK 286

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHG 288
            T  + +  +  +A   IGK      N +        +     +A A + G+ K  + H 
Sbjct: 287 KTGVVSNIRLLDIANRIIGKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQ 346

Query: 289 VRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
            R  +AT      G     + +  G K++   + Y K         ++   +++ +++
Sbjct: 347 SRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEK--LNQDMENLAARLNN 402


>gi|227522295|ref|ZP_03952344.1| phage integrase [Lactobacillus hilgardii ATCC 8290]
 gi|227090502|gb|EEI25814.1| phage integrase [Lactobacillus hilgardii ATCC 8290]
          Length = 379

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/359 (9%), Positives = 94/359 (26%), Gaps = 35/359 (9%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  YY   GH R          +    + S +         I +  +           + 
Sbjct: 14  RYYYYDMDGHEREKSKSGFKTKSAARLFASRVEIDYQNGLNIATGDRP---FADYFDYFY 70

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFL 137
            +     +   ++  ++     + +  G    + +  +  +  +      H   +  +  
Sbjct: 71  HTYKEPKIKFMTQQRYKITSRVLHKYFGKTSLKNMNRQRYQQFINHYGSDHAKDTVYKVN 130

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---- 193
           + +R   + A+  + +  +    VE    K+   +       +  +      +       
Sbjct: 131 SLVRAAAQNAILDDLIHKDFTQRVEIIYDKSRDKKIEYLNIDEVKRLASYLENNLNPNYT 190

Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--------- 242
                   L +G R  +      + +  N  +I   K+   +                  
Sbjct: 191 SSFMILTALLTGARLGEIQALTWKDINFNFKTISISKSWNYMQGGGFQDTKNEGSKRIIS 250

Query: 243 ---------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVR 290
                    K+L      K   F+N      +++  +   +      G+N+S    H +R
Sbjct: 251 VNNNLLDDLKILKDHRKDKSMVFMNQFNTIPSSSALNKKLRQSLKDLGINRSGFHFHSLR 310

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAET---YTKGADRIRLGIKNSRRISSVVDSD 346
                     G   + +    G   +        Y     + +   +    +  ++  +
Sbjct: 311 HTHVAYLLACGIDIYIISKRLGHTNISTTTRTYSYLIDEYKAKNDEQIRNELDKLLPQE 369


>gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33]
 gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33]
          Length = 282

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 170 HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 229

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 230 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 261


>gi|228987487|ref|ZP_04147606.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772219|gb|EEM20666.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 398

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/366 (9%), Positives = 90/366 (24%), Gaps = 58/366 (15%)

Query: 15  RTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           R R  K  Y  R      G  R I             + +          +  +   K T
Sbjct: 14  RKRGKKWEYRIRYVDKTTGKKREISKGGFDSKKEATFHANERERQL---FHGMAADSKKT 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
            L   + E+ ++   G +  ++ I  ++  +  II    +     +     +  +    +
Sbjct: 71  LLSEYLIEWLETYKKGKVGQSTYILHKNNINNHIIPYFQNIKLADMNKIEYQKFINHLIN 130

Query: 129 TPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
              S             S++      +  +       ++ +   + ++     TKE + +
Sbjct: 131 KGYSKRTVEIIHSTMSNSIKRAIDLEMVYKDFTNRILIAADHFNQHSKKENYLTKEQVSK 190

Query: 182 FKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---- 236
             +   +         + L  +G+R  ++         +    +                
Sbjct: 191 LLNTAHKDKMIYYVLIYTLVETGMRKGEATALEWDTNIDLDNKMIHIDRTINYHAYTPIG 250

Query: 237 -----------------------------------LPDGFMKLLAMTPIGKETFFINNDK 261
                                                +     L         F      
Sbjct: 251 QKNSKDLIGKTKTYDSVRSITISDRLVSVLKTFKTYQNECKLKLGARYDKTFDFVFTTTG 310

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           + +  +            A + +   HG+R   A +  +AG     +    G K+++   
Sbjct: 311 KPIPKSTLKNVLDRILKNAELPQIGVHGLRHTHAVLLLEAGVEMKYIQERLGHKSIEITS 370

Query: 320 ETYTKG 325
             Y+  
Sbjct: 371 NIYSHV 376


>gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 435

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S    + ++       +     D   + I    I        R  ++ R    ++   +
Sbjct: 121 KSRTEGTYLNLSHADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNY 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K        + +    +   +   SE  Q RL
Sbjct: 181 LCWLSRLMYRAVSRNIIRCNPFENAKYEKEDKNIRYLQKYDMARLMAMRMNDSEAEQARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL  +D      +H+Q      K  +     T       +  +A T I    
Sbjct: 241 MFIFSCFTGLAIADMETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCR 300

Query: 255 FFINN-------------------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
              +N                        + +  +          G+    S H  R   
Sbjct: 301 KANHNDLTTGQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            T+S  AG     +    G  ++   + Y +  D      ++  R+ + + S +
Sbjct: 361 GTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCK--ISEDMDRLIAKLSSKE 412


>gi|319956948|ref|YP_004168211.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
 gi|319419352|gb|ADV46462.1| integrase family protein [Nitratifractor salsuginis DSM 16511]
          Length = 365

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 101/355 (28%), Gaps = 36/355 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKKP 68
            R  ++   +     R+ +     ++     Y+             +          + P
Sbjct: 6   KRGSRLYLQYTVNGKRKQKSTGLDDTPANRKYLRERVIPELERRIESGALAEEARRDEIP 65

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
             L    ++Y +S         +         ++  +    D  KIT   +R        
Sbjct: 66  KALSHYAAKYLESKEHLK----TYWELLQMVKRVEAEFKSTDVDKITRGMVRDWAMGLLK 121

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  +++  +  + + A   E + +NP   ++ P +             +      
Sbjct: 122 TISPTTTRKYVNVLGGILEMAKDYEAIQVNPATGIKLPGKTAPTRNRTPFSTEEVALILE 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------IT 234
           S     R       Y+G R  +      + +      I+ ++                 +
Sbjct: 182 SAAGWFRNYLAVAFYTGARPGEILAIKPEDIDLKRRVIRIERNIRHGKVTTPKTAYSVRS 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
           V + D  +  L    +    +   + +      A +    ++    + G+     +  R 
Sbjct: 242 VPILDPLLPYLRGQLMQAGEWLFESPRGGHYNGARKVMYHWQNLMERLGIEYRDLYTTRH 301

Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVD 344
              T    +G  +  EL    G K   Q    Y +  +   L      +IS  +D
Sbjct: 302 TFITHMLMSGELSVLELAQIVGHKNAQQIMQSYARFINEQHL------KISREID 350


>gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22]
 gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22]
          Length = 281

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 76/252 (30%), Gaps = 17/252 (6%)

Query: 108 DFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D  + +I    I S V   K     + S+    +  +R +   A+ +  +  +P      
Sbjct: 17  DIPFTQIDFDFIESYVYYLKVNLQLSASTTNNTIKPLRKVVMRALNKGLMHQDPFFGYR- 75

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNN 220
           P+R T   +  + +++++      +        +  L+   +GL   D       ++   
Sbjct: 76  PQRITITRKWLSMDEIERLMQTDMKHESANFIRDMFLFSTFTGLAYVDLKNLRHDNIVWQ 135

Query: 221 IFSIKTQKTGTIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               +        T       +     +L+                +        I  K 
Sbjct: 136 KDGKQWIVLNRQKTGTTSYIPLLDIPLRLIEKYRNTAFAGLDGKVFRLCTIENADIQLKK 195

Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A  A + K    H  R   AT+    G     +  T G +++   + Y           
Sbjct: 196 IAKAANIEKRLTYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIYADITRTK--IN 253

Query: 334 KNSRRISSVVDS 345
           ++   ++  +++
Sbjct: 254 EDMTNLAERIEN 265


>gi|239905355|ref|YP_002952094.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239795219|dbj|BAH74208.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 411

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 105/324 (32%), Gaps = 17/324 (5%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAV 89
           ++        +T       A      ++  +    ++          +Y  +        
Sbjct: 66  KKAATTGEGPATLAEKRELAEARRKAEQTAMERDARQGVIFDAFWQDDYVIALRNRVKPE 125

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKW 146
           + +     +   +    G    R+IT   +    +  +       S    + + R ++K 
Sbjct: 126 SYQKEEAHFKFWLSPTLGKLPLREITEADLERVQDKIRAAGLSDRSHEYIMGTFRRVWKH 185

Query: 147 AVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGL 204
           A +++ VA+   +   + PK     +R  T E++Q       +          F L +G 
Sbjct: 186 AFKRKIVAVECPVGKLDIPKPVNTRLRVLTPEEIQALLAELATVDQTAHDLTVFALLTGC 245

Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           R S++ +   +++     +      K      V L    + +L     G+   ++   + 
Sbjct: 246 RASEAFKLRWENVDFVREAALFPETKNREPREVFLAADVLDMLKRRGPGRPGEYVFTKRD 305

Query: 263 KMNATQFSIWFKAKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWK 314
                     FK    + G N         + H +R  +AT +A  G    ++   +GWK
Sbjct: 306 GTPYDAAPSSFKTALERLGFNEGRALRDRATFHNLRHSAATYAARRGVPVKDMQTIFGWK 365

Query: 315 TVDQAETYTKGA-DRIRLGIKNSR 337
           T      Y KG+ D  R  +K   
Sbjct: 366 TPSMVFRYAKGSEDVQRRAMKGLA 389


>gi|159897208|ref|YP_001543455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890247|gb|ABX03327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 287

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 86/285 (30%), Gaps = 19/285 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             I EY  +      +  +  ++     +      +   + +T   +R+          S
Sbjct: 4   QWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQNIS 63

Query: 133 AIQFLTSMRVLF---KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                + +       +W   + Y+       ++ P+        +T + +++        
Sbjct: 64  ITSHYSYLNDALVLVRWLAEEGYIQPVKTDKLK-PRLPKRLPAHYTMDQIKRLLLV--AE 120

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            + +     LL +G+R S+  +       +   ++   K      + +     ++L    
Sbjct: 121 LREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKGSKDRYIWISSVTQEVLRTYI 180

Query: 250 IGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300
             +          +  ++ +  +     F   A+ A +     +  H  R   A      
Sbjct: 181 ASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK 240

Query: 301 GATAHELMATYGWKTVDQAETYT----KGADRIRLGIKNSRRISS 341
           G  A  L    G +T+  +  Y       A + R G+    ++ S
Sbjct: 241 GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVES 285


>gi|300214620|gb|ADJ79036.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius CECT 5713]
          Length = 305

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 24/288 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           R+K         ++      G+++  +   +     +  ++          +I  + I +
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    ++          +   +              V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITV 235
                   G++P L +  LL   +GLR  ++              I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------------FSIWFKAKATKAGV 282
                    +    +  +     N   +                   +   K    +  +
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPNGTPIFVKKRVFNSTVNNRLKQYCEELAI 241

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 242 PIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|212709652|ref|ZP_03317780.1| hypothetical protein PROVALCAL_00699 [Providencia alcalifaciens DSM
           30120]
 gi|212687463|gb|EEB46991.1| hypothetical protein PROVALCAL_00699 [Providencia alcalifaciens DSM
           30120]
          Length = 359

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 96/341 (28%), Gaps = 29/341 (8%)

Query: 11  VTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPA--YMSALTGSTPKREYINSPR 65
           + K     G + Y    G    G+ +       S    A  +         ++       
Sbjct: 6   IEKRPKADGTMKYRCTVGVKEGGKYVYRENKTFSKVAAAKSWGVRRVAEIEQKGLPKICT 65

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  LI  Y      G  A  ++    +    +     +    K++   +    + 
Sbjct: 66  PSTITVGDLIQMYLDEPGLGGKAGTTKKYVITSL--LKSTLANISLAKLSVNDVIEHCKL 123

Query: 126 RKHT---PSSAIQFLTSM-------RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R+ +   P++  Q ++ +       + +F           +  +  +        +R   
Sbjct: 124 RRASGTGPNTVSQDVSYLTVVLNSAKSIFDIDYTNNPGRDSKPILNQMGLIAKSNVRSRR 183

Query: 176 KEDMQQFKSFWSEGSQ---------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
               +          +          R  F F + S +R  + CR     +     S+  
Sbjct: 184 PTKDEILMLMEGLKKRENQKQCRIPYRDIFTFSMLSCMRIGEVCRILWSDVDYTNKSVIV 243

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           +              + LL            +++     N+   S          G+ + 
Sbjct: 244 RDRKDPRKKSGNHMLVPLLGEAWGILTRQDKVSDRVFPYNSQSVSKGVHKVRDALGIKDL 303

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             H +R+  A+   +AG +  E+    G K++      YT+
Sbjct: 304 RYHDLRREGASRYFEAGLSIEEVAQVTGHKSLTTLWRVYTE 344


>gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
 gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam]
          Length = 317

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 40/288 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHI-- 119
           I EY +     +L+  +  S+E+   +                         IT++H+  
Sbjct: 7   IKEYIEDRSLENLSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKG 66

Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------- 169
             R   + R+++ ++    LT+++V F +   +  +       +     + +        
Sbjct: 67  YMRYCYQERRNSHTTVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNVETLTE 126

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             +R   +   ++ +       +      FLL +G R  +      + +      +    
Sbjct: 127 EQVRLMLRHLRRRRRVDDFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDGQVVFPA 186

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKA 277
           TG   T +      KL++     K+    +                 +     + F   A
Sbjct: 187 TGKARTQQGQPLGAKLVSELKEYKQYLENDTYGLPAYLFTTRTGRKLSREAIKLVFVRLA 246

Query: 278 TKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +        SAH +R F  +    AG +   +        ++    Y
Sbjct: 247 QELKFEYGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKY 294


>gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 397

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  ++    E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWAVRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++            +  K  ++  
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKDKPKVAIDYN 319

Query: 268 QFSIWF-KAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +   K            + + H +R    T  A       +L    G   +      
Sbjct: 320 ALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
 gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides
           vulgatus PC510]
          Length = 341

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 89/315 (28%), Gaps = 46/315 (14%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITT 116
           KPT     ++++  +       ++ N+ +++   F  +I    +             IT 
Sbjct: 2   KPTDFSKYLTDFFGTYLPIECGVSQNTILTYSYTFSLLIEFLKEQEFINPQRVTLADITK 61

Query: 117 KHI----RSGVESRKHTPSSAIQFLTSMRVLFKW--------AVRQEYVAINPCLSVERP 164
           + I    +   E R  + S+    L ++R  + +          R   +          P
Sbjct: 62  ERIINFLQWLEEDRHCSVSTRNARLAAIRSFYSYLQYRDVKGMFRYHEIMSIRKKKTAAP 121

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           +     I        Q        G +  +    L  SG R  +       +++ N  + 
Sbjct: 122 EMAYLTIDGIKLILSQPDLKTRY-GRRDFVLLSLLYDSGARVQELIDLTPPNIEFNDTAT 180

Query: 225 K--TQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                K      V              + + L          F N   +K++        
Sbjct: 181 VKLCGKGNKARIVPLSKQQASNLKKYMYDEGLMKEDRHCVPIFCNFHGEKLSRVAVLNIV 240

Query: 274 KAKATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           K  A  A   KS          H  R   A    +A      +    G  +    E Y +
Sbjct: 241 KKYAEIAR-KKSPDLIPENLGCHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYAR 299

Query: 325 GADRIRLGIKNSRRI 339
            +++ +L  +   R+
Sbjct: 300 ASEKKKL--EALSRV 312


>gi|291562350|emb|CBL41166.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 403

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/390 (11%), Positives = 90/390 (23%), Gaps = 71/390 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    + P  + +  T   K + Y+R       G+R+ +              A      
Sbjct: 1   MAKGKKRPAELPEYGTVMMKGVQYYRTRITDADGKRVAIYGLTREELYDRAEDAQKKIAE 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
              +  +P     T++    ++      G++  N+   +    ++ I+   G     ++T
Sbjct: 61  VVFHRENP-----TVEEYCEKWLL-MRSGTVRTNTLEGYARMVNRYIVGPIGQMYMDEVT 114

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T  +R  +       S     L  + + +F  A   + +  NP  ++     K    R  
Sbjct: 115 TDDLRLLMVPLSKGSSGMYGQLNMLIKNIFNSAEESKVIKENPSKTICARGGKPAKRREA 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             ++             P +     LY+GLR  +        +  N  +           
Sbjct: 175 LTDEQTAILLDSIRELPPYVFVMIGLYAGLRREEILGLKWDCVFLNEKTPYISVRRAWHV 234

Query: 235 VELPDGFMKLLA-----------------------------------------------M 247
                    LL                                                 
Sbjct: 235 EGGEPVVNTLLKTPAAKRDVPIPKCLVACLKEAREKSESEYVISNSKGTVLTEAQFVRVW 294

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFK-----------AKATKAGVNKSAHGVRKFSATI 296
             I   +         +N        K                     + H +R    T 
Sbjct: 295 KYITVRSTAERCYYTYVNGQSIKHRIKPRLGEHQPNNPKLVYTMDFKVTPHMLRHTYITN 354

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKG 325
               G     +    G +        Y K 
Sbjct: 355 LIYKGVDPKTVQYLAGHENSKTTMDIYAKV 384


>gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium]
          Length = 163

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 2/106 (1%)

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +                +  L     + ++       +  +N        K     AG+
Sbjct: 58  WLPFALERKFRGAGREWCWQYLFPAASLSEDPQSGKTRRHHLNELSVQRAVKVAIGIAGI 117

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           NK  + H  R   AT   + G     +    G K V   + YT   
Sbjct: 118 NKPATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHVL 163


>gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 394

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 94/330 (28%), Gaps = 59/330 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI------ 119
           K  T   L   Y   A    ++ +     +   +  ++ +        IT +H+      
Sbjct: 67  KDITFGELAERYAAWAKSTRISGH---KMQRLLELHVLPRLHSMPAASITPQHLNELRSE 123

Query: 120 ---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY---------------VAI 155
                    R   E R  +  + +  L ++R ++ +A    +               V  
Sbjct: 124 LEQTTPLRGRGKAEGRGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLS 183

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCR 211
                V  P+     +R     ++    S+  +     S+        L +G+R  +  R
Sbjct: 184 RRGHGVRLPRSDARRLRILNDAEISALLSYRGQNVVETSELHDMILISLDTGMRAGELVR 243

Query: 212 AGVQHLQNNIFSIKTQ-----------KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
              + +  +  +I+             +T  +    L    + +L          F    
Sbjct: 244 LRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITMLRRRVGSPGLLFPGRG 303

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATY 311
               N T  S          G+N            H +R   AT   +AG   + L    
Sbjct: 304 GAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELL 363

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           G  +V   E Y    DR +       R++ 
Sbjct: 364 GHSSVAVTERYLHLCDRAKRNA-ALARLTR 392


>gi|15805540|ref|NP_294236.1| integrase [Deinococcus radiodurans R1]
 gi|6458203|gb|AAF10092.1|AE001910_5 integrase, putative [Deinococcus radiodurans R1]
          Length = 444

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 103/368 (27%), Gaps = 50/368 (13%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G++ +          R      +  + A   A+  +    E    P ++  T++ L
Sbjct: 21  KTPAGRVRWRVMTTTPAGERRHVTGTARNMTAAREAVREALRAAERDTLPPRERVTVEQL 80

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +S Y +     SL   +  ++ +   + I    G    + +T + +R+  ++++      
Sbjct: 81  VSAYIEH-RAPSLKGRTVENYRALLRRNISPSLGQLKAQGVTPQRLRAFYDAQREAGQGD 139

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S   Q    +   +   +    V +NP         +    R       +  + + +  +
Sbjct: 140 SVRRQTHNLLNAAYLLGLTDGVVTVNPAARARPVYVERGAARVKAFTPDEAARFYAAARA 199

Query: 191 QPRLAFE-FLLYSGLRCSDSCRAGVQHLQN------------------------NIFSIK 225
                   F+L +GLR  ++       +                           ++   
Sbjct: 200 DRWGWPLAFMLATGLRPGEALGLTWADVTMRGSAEGGTLAAVVHIERTRSVSGGRVYEDT 259

Query: 226 TQKTGTIITVELPDGFMKLL------------------AMTPIGKETFFINNDKQKMNAT 267
            +      ++ +     +LL                            F+          
Sbjct: 260 PKTERGRRSLTVTGDAARLLLDARAQAEREAGARLRHNGREYQSTGYVFVTRAGTPYRPD 319

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325
                        GV   + H +R   A++ A AG     L A  G        +TY   
Sbjct: 320 NLRRPMARLCQAVGVPVLTPHKLRHTWASVQAAAGVPVEVLSAELGHAAPSFTRDTYRHV 379

Query: 326 ADRIRLGI 333
            +  R  +
Sbjct: 380 YESERASL 387


>gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 77/258 (29%), Gaps = 19/258 (7%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +    +  + + +       T+++++          +    R  F
Sbjct: 189 FKRII-IIARNNGILVGDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 247

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
            F  + GL  SD      +++Q +        T    T    +  +  +    + K    
Sbjct: 248 VFSCFCGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKGK 307

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATY 311
                    ++  + + + K  A   G+ K  + H  R   AT +    G     +    
Sbjct: 308 LPDGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSKML 367

Query: 312 GWKTVDQAETYTKGADRI 329
           G   ++  + Y +  +  
Sbjct: 368 GHTNIETTQIYARITNSK 385


>gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01]
 gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01]
          Length = 330

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 82/323 (25%), Gaps = 36/323 (11%)

Query: 17  RHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G      +Y     GRRIR            Y S    S          R     L  
Sbjct: 5   KDGNTWTADFYENGRSGRRIRKKGFKTKAAAQRYESEFFASLNATGRPLDDR-----LSD 59

Query: 74  LISEYRKSA-----HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           L++ +                 +  + E   + +        + +     +      +  
Sbjct: 60  LVTLWHDLHGCSLKDAKHRLARTLATVERLGNPMASSFDALAWARYRQTRL------KDV 113

Query: 129 TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +P +       +  +F   +R   +V  NP   V + K     +   T + ++Q      
Sbjct: 114 SPHTVNHEQRYLSAVFSELIRLGAWVGNNPLAKVRQIKTDQTELTFLTLQQVEQLLEECK 173

Query: 188 EGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +           L +G R  ++       L          K     +V +P    ++ 
Sbjct: 174 RSTNNHTYPVALICLATGARWDEAESLPRGALFGGKAHFHRTKNRQSRSVPIPKEVEEIA 233

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAG 301
               +                      F++   + G + +     H +R   A+     G
Sbjct: 234 LKVGMPGNGRLFMPC---------RSAFRSAYQRCGFH-TPGQMTHILRHTFASHYMMGG 283

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    G  T+     Y  
Sbjct: 284 GDILGLQRILGHSTITMTMRYAH 306


>gi|315163423|gb|EFU07440.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0645]
          Length = 387

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/374 (11%), Positives = 99/374 (26%), Gaps = 59/374 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + +   G   + ++         G  +R                  L     + E   
Sbjct: 4   IQQYKKSDGTTAWLYKVYMGKDPVTGKEKRTTRRGFKTKKEAS---LDLARFQLEIESTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
             ++   T   L   +    H  ++   +    +++F +QI+   G      IT    + 
Sbjct: 61  ISQRSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQK 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +        S  +  +    +F + +    +  NP      PK          +   ++
Sbjct: 120 ILTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEEEFYTKE 179

Query: 182 FKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------- 221
               + +        +    F    Y+G R  +      + +  +               
Sbjct: 180 ELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSD 239

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                  T+   +  T+ + DG + +L           ++   +  N             
Sbjct: 240 GSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVISTIKAN 299

Query: 270 -----------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      +      A K    K    HG RK  AT+  +AGA   ++    G  + 
Sbjct: 300 KKRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSS 359

Query: 317 DQAE-TYTKGADRI 329
                 Y + +   
Sbjct: 360 KTTMDIYIQVSKNR 373


>gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 418

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 99/320 (30%), Gaps = 32/320 (10%)

Query: 43  FIPAYMSALTGSTPKREYINSPR-KKPTTL-KWL--ISEYRKSAHWGSLAVNSRISFESY 98
           F  A +  L         I  P  + P T+   L  +  Y        LA ++R +    
Sbjct: 92  FTRAALKHLLKVLRVDGRIRPPALRLPGTVVDELNHLDVYLD--EIRGLAASTRRNHRDC 149

Query: 99  FDQII-RKSGDFDYR--KITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVR--QE 151
               +  + G       +I    +   +  R   HTP+SA    +S+RV  ++       
Sbjct: 150 VRDFLVDQFGGHRIDMRRIKPADVLHFIVERSKGHTPASAGTIASSVRVYLRFRQFSGDH 209

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207
             A+   +            +  T+  + QF S +      G +       L+  GLR  
Sbjct: 210 TEALIAAVPKVAVWSMARLPKLLTQAQLAQFLSAFDTQTASGRRDYAMARLLVELGLRVG 269

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETF---------F 256
           +     +  +  +  +++ + T    T    LP    + L                    
Sbjct: 270 EVAALQLADVDWHEGTLRIRATKCKRTDLLPLPVQTGRALFDYVRFGRPQTSSRALFVRH 329

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGW 313
                + +         +    + G   S+   H +R  +A+     GA+  ++      
Sbjct: 330 RAPFDRPVTPAVVCSAIRLAYARCGWPSSSMGTHLLRHTAASRMLGNGASLKDIADVLRH 389

Query: 314 KTVDQAETYTKGADRIRLGI 333
           ++++    Y K  D  RL  
Sbjct: 390 RSINTTMIYAK-VDFRRLAA 408


>gi|154503659|ref|ZP_02040719.1| hypothetical protein RUMGNA_01483 [Ruminococcus gnavus ATCC 29149]
 gi|153795759|gb|EDN78179.1| hypothetical protein RUMGNA_01483 [Ruminococcus gnavus ATCC 29149]
          Length = 395

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 101/337 (29%), Gaps = 37/337 (10%)

Query: 18  HGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G   +     F    G++I+       T   A   A +          + +K+  + + 
Sbjct: 12  NGTYYFRANLGFHPITGKQIQKYKSGFKTKKEA-REAYSKLMLTSTEELTEKKQQLSFQQ 70

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
            I E Y        +  ++ ++  S   +           +I   ++++         +P
Sbjct: 71  FIEETYLPWYK-TQVKESTYLNRRSTIQKHFSYFYKMTVDEIEPINVQNWQLELAKEFSP 129

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +        + + F  AV       NP   +   K K   +  WT ++ Q+  S   +G 
Sbjct: 130 NYIRIVQGMLSIAFDRAVVLGLAKKNPSRMIGNIKSKKTKVDFWTLDEFQKVISLLYKGD 189

Query: 191 QPRLAFEFLLY----SGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKT 229
                     +    +G+R  ++       +                  +    ++ +  
Sbjct: 190 YYEHYLFISYWLLFMTGMRIGEAAALQWSDINFETGLLSITKTLYYKTMDEYKFVEPKTQ 249

Query: 230 GTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            +I T+ +    +K L      +          ++ +    +        +  A  AGV+
Sbjct: 250 ASIRTIYIDTDTIKELKAWQEVQQKVLKGCDLVLSYNGIPTSKHTLPRALEKLAGLAGVH 309

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   H +R   A++    G     +    G + +   
Sbjct: 310 RIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 346


>gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 339

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 95/331 (28%), Gaps = 36/331 (10%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK I   Y     GRR+R           A+          + ++        TL
Sbjct: 4   RKLTTGKWICECYPSGRSGRRVR-KQFATKGEALAFERHTMDEAEAKPWLGESVD-RRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR-- 126
           K ++  + K      L   S  + E+ +D+++      G+     +++K      + R  
Sbjct: 62  KDVVELWFK------LHGKSLTAGENIYDKLVLMVDALGNPLATDLSSKLFAHYRDKRLT 115

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPW 174
                        +P +     + +  +F    R  E+ A NP  ++ +     + +   
Sbjct: 116 GEIYFSEKWKKGASPVTINLEQSYLSGVFSELARLGEWTAPNPLENMRKFTIAEKEMAWL 175

Query: 175 TKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           T E + +     +       L  +  L +G R  ++       +     +    K     
Sbjct: 176 THEQITELLCDCNRQNPLLALVVKICLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNR 235

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           ++ +     + +      K           +      +  + + T        H +R   
Sbjct: 236 SIPISKELYEEIIALDGFKFFTDCYFQFLSVMDKTSIVLPRGQLT--------HVLRHTF 287

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A     +G     L    G   +     Y  
Sbjct: 288 AAHFMMSGGNILALQRILGHHDIKMTMRYAH 318


>gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium]
          Length = 164

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      K  A  AG+ K    H +R   AT   ++GA    +    G K V   
Sbjct: 98  HHVHESGLQRSIKKAAISAGITKRVTTHTLRHSFATHLLESGADIRTVQELLGHKDVSTT 157

Query: 320 ETYTKGA 326
             YT   
Sbjct: 158 MIYTHVL 164


>gi|66395896|ref|YP_240263.1| ORF011 [Staphylococcus phage 96]
 gi|62636317|gb|AAX91428.1| ORF011 [Staphylococcus phage 96]
          Length = 349

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 17/344 (4%)

Query: 11  VTKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +TK + +      Y  +    +  +       T   A  +A        +  N    K  
Sbjct: 6   ITKRKNKATASWQYDVKHPSFKSGKKRKSGFKTKAEATNAAQQLLRDLDDGNNLDENKK- 64

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES--R 126
             +   +++  S +   +A      ++          G DF  + I     +  +    R
Sbjct: 65  -FEEYYNDWLDSKNKKHVASQQFYWYQRSLKLFNEYFGSDFLIKNIKRSEYQKFLNEFGR 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             T  +  +  + +   F+ AV + Y+  +P   ++    K           ++Q+    
Sbjct: 124 GRTNETVRKLNSCLSQCFRDAVYEGYLKKDPSYQIDIRGTKKSKDEHSKFITIEQYLQLI 183

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             F S      +    L  +G R SD        L     +I  + T T+    L +   
Sbjct: 184 EYFKSRDESSYIFLFILAITGARYSDVINMLPIDLNEKEGTIHLRGTKTVNADRLVEVPK 243

Query: 243 KLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297
           K +        K     +N   K++       F    ++ G+N    + + +R    +  
Sbjct: 244 KDIQHIKAKLSKLPKRTDNKLFKLSHNAVKKSFNHAKSQIGLNDTTITPYSLRHTHTSFL 303

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADR-IRLGIKNSRRI 339
              G     +    G   +    +TY+   D   +   +  R++
Sbjct: 304 LSKGIPIEYISKRLGHYNISITLDTYSHLLDEHKKEQGQRVRKL 347


>gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 90/297 (30%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + +   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E++++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENLEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -QRKKTDYLGRVKLLPEAVALIEKYRDDTRETLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +   +     ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKK--LFEDMDRFVE 400


>gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
 gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus
           sp. HGF5]
          Length = 343

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 90/301 (29%), Gaps = 42/301 (13%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------IRKSGDFDYRKITTKHI 119
           TL+  +     +     L   +   +E ++                  D     +    +
Sbjct: 20  TLEQALDMAISAKRAEGLRKRTIRDYEKHYGYFVKWLRVNHPEAEYIEDVSAAILRDFVL 79

Query: 120 RSGVESRKHTP---------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
               ++R++                 ++    L +++ LF    R E + +NP   V+  
Sbjct: 80  YMKHDARRYDGHKYINSDKQRIGLEDTTINIRLRTLKALFNQLERDELIEVNPAGPVKLL 139

Query: 165 KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  +     T E++             G +  +A   +L SGLR S+        +   
Sbjct: 140 RQDVDLTNGLTDEEVTAILAQPDRRDFVGFRDYVAICLMLDSGLRISEMLSLRAADIDFQ 199

Query: 221 IFSIK----TQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFS 270
              I       K      V +     KLL             +  F++     + A  F+
Sbjct: 200 TRFITLPGDRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTDRLFLSCYGDPVTANHFN 259

Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              K    KAG+     +AH  R   A      GA    L    GW+ V     Y +   
Sbjct: 260 KRLKYYGEKAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDT 319

Query: 328 R 328
           R
Sbjct: 320 R 320


>gi|227833790|ref|YP_002835497.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184862|ref|ZP_06044283.1| hypothetical protein CaurA7_12772 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454806|gb|ACP33559.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 394

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 104/386 (26%), Gaps = 65/386 (16%)

Query: 16  TRHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +  ++ Y       + +G R R+     +       + +     + E          TL
Sbjct: 13  DKKKEVYYRIIDLGHRPNGNRWRVRV--TAKTKQRLAAKVKAKLKELEDGTYQAGTTPTL 70

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
               + +  +  +  +      ++ SY    I   G     ++T +H+R   +  +    
Sbjct: 71  NEWWAYWCDNIAYHRVRPRVLDNYRSYGRNHIPHIGRNRIDQLTPEHVRHLHKKMRQGGA 130

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +      ++    K AV +  + +NPC  ++RPK  +     ++K + +   +  + 
Sbjct: 131 SDRTIQAVHATLSKCLKDAVHEGKITVNPCDRMDRPKANSVPREAYSKAEAKAILTTMAG 190

Query: 189 GSQPRLAFEFLLYSGL-RCSDSCRAGVQHL--------------QNNIFSIKTQKTGTII 233
            S    A   L  +   R  +        +              +      +  + G+ +
Sbjct: 191 DSPMMRARWALALTMAVRQGECLGLEWDRVDLDRGLVDLSWQVQRIPWVHGEGCECGSKV 250

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---------------------- 271
           T          +A     +         +   A    +                      
Sbjct: 251 TAARCPKRRPDVAPGYEHRPCHKGLWFVRPKTARSSRVLPMSNVFHAAMVELHQGQESGL 310

Query: 272 ----------------WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                            +     +AGV +   H  R    +   DAG  A  +    G  
Sbjct: 311 VFHDEGKPILNKVDDAAWYELCERAGVRRMVLHTARHTVISHLLDAGVDAELIRQFAGHS 370

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
           T+     Y   ++          ++ 
Sbjct: 371 TLLSTRHYLHSSEDA--MRDALEKLD 394


>gi|84687547|ref|ZP_01015423.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664456|gb|EAQ10944.1| Phage integrase [Rhodobacterales bacterium HTCC2654]
          Length = 360

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 103/336 (30%), Gaps = 21/336 (6%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
                   +  K +YY +  + +  R +L    E T   A + A            + R 
Sbjct: 28  KGFYLVTGKTKKTLYYQKDVNRKTVRHKLGSLPEITVAAARVEAEQLRAEHATGAVAQRL 87

Query: 67  KP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 TL+     Y         + +++    +  +  +    D    +IT     +  
Sbjct: 88  AASRIPTLRDATDTYLARPKLR--SEHNKNQVRAQMENKLTDWLDLRLDEITKADCVAMH 145

Query: 124 ESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                    +A   L S R ++  A R   +   P +++E       G +     D  + 
Sbjct: 146 ARLGADGERAANHVLKSFRSIYNHARRVHDLPECPTMAIEWFPEPASG-KIIDDLDAWKE 204

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                E    R  + FLL +GLR S++       +  +   +   K G    + L     
Sbjct: 205 AVDGLENDVHRAFYRFLLLTGLRLSEALSLRWDQVHADHLHLPLTKNGRPFDLPLLAEHH 264

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302
            +L      +  +     +  ++                +  SAH  R+  AT++A++G 
Sbjct: 265 GILQPMQAYRSDYVFPGTRHALHLKSPER----------IAWSAHAHRRTFATVAAESGL 314

Query: 303 TAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNS 336
               +               Y K   +++R  ++  
Sbjct: 315 WEETIGRLLNHTPQSVTGAHYVKVGHEQLRAPMEQV 350


>gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8]
 gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8]
          Length = 283

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 77/259 (29%), Gaps = 19/259 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAI 134
            ++      +  ++ S+      + R        ++    +++        R   P+S  
Sbjct: 9   IQTMRQHGFSPQTQKSYLYVVADLARYY-RRSPDQLEVGDLQTYFNYLVQERSLAPASCR 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +L  +R L+      + +            ++ + I               ++  + R 
Sbjct: 68  LYLHGIRFLY-----LQVLHWADFDVNLVLPKRPQRIPELLTRQDVARIVGATKNPKHRA 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                   GLR S++    V+++        I   K G    V L D  + +L       
Sbjct: 123 LLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGGKDRMVPLTDVLLDVLRAYWCLG 182

Query: 253 ETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305
                         Q + AT     ++     +GV +    H +R   AT   + G   +
Sbjct: 183 RPVLWLFPSEVLVGQHLTATTAQKVYRHAKRLSGVQRRGGIHALRHAYATHQLEHGVPLN 242

Query: 306 ELMATYGWKTVDQAETYTK 324
           EL    G   +   E Y  
Sbjct: 243 ELQKYLGHSDLRTTERYLH 261


>gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574]
 gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  ++ S    +           D    ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGVDIRKESMANYHSTRIHLQEFIQKKYKVSDLALSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    I     V+  K   +  +   +   +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLHLEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIWLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   R 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPRK 390


>gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
 gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII]
          Length = 313

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 80/295 (27%), Gaps = 26/295 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           AY   +   +  + ++   +     LK L   +         +++S     S    +   
Sbjct: 2   AYEQFIMNESANKPWMGD-KPDTRCLKELTDLWFA---LHGRSLSSGDKIHSKLRLVADA 57

Query: 106 SGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRVLFKWAVR-QE 151
            GD      T K        R               +P +     + +  +F+  +R +E
Sbjct: 58  LGDPIAVNFTAKDFAHYRNKRLTGEIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEE 117

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
           +   NP   + +       +     + + +  +  S            L +G R S+S  
Sbjct: 118 WKLPNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNRVIRVCLCTGARWSESQF 177

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                L  N  +    K     TV +   F + L      +           +      +
Sbjct: 178 LTKNQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIV 237

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             K + T        H +R   A      G     L    G   ++    Y   A
Sbjct: 238 LPKGQLT--------HVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFA 284


>gi|167841450|ref|ZP_02468134.1| phage integrase family protein [Burkholderia thailandensis MSMB43]
          Length = 339

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 101/340 (29%), Gaps = 28/340 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +G      RK         +P       A    +                   L+ +I  
Sbjct: 9   NGHWTGKVRKAGYPAQSATFPTRKE---AEKWIIDTEAAINAGRFQNLDGSALLRDVIDR 65

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------KHTP 130
           Y +         +S         +   + G +   K+T   + +  + R         + 
Sbjct: 66  YLRDVTPSKKGESSETWRLKAIQR--DEIGSYSVGKLTPAVVANWRDRRLAGTDGRPVSG 123

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQ-----QFK 183
           S+  + +  +  + + A ++  +   +NP   V RPK      R  T ++         +
Sbjct: 124 STVNREMNLLHHVLETARKEWGLGAPVNPVSEVRRPKNSPARERRLTSDEKVALLAACRQ 183

Query: 184 SFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240
           +    G Q  LA    L   +G+R  +  +  ++ ++ ++ F                  
Sbjct: 184 THSRSGRQSYLADVVELALETGMRQGEIIKLEIEQVRLDDRFVGLRAGGTKTEEARTVPL 243

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             +   +                + +      F     +AG+ + + H  R  + T   +
Sbjct: 244 STRAAEILKSVIGDRTTGRVWVGLTSDAVKRAFIRARDRAGIKDLTFHDSRHDATTRFVE 303

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            G T  E+M+  G KT      YT            ++++
Sbjct: 304 LGLTDTEVMSITGHKTQSMMRKYTHL-----RAKDLAKKL 338


>gi|90961894|ref|YP_535810.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
 gi|90821088|gb|ABD99727.1| DNA integration/recombination/inversion protein [Lactobacillus
           salivarius UCC118]
          Length = 305

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 24/288 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           R+K         ++      G+++  +   +     +  ++          +I  + I +
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    ++          +   +              V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLINRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITV 235
                   G++P L +  LL   +GLR  ++              I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------------FSIWFKAKATKAGV 282
                    +    +  +     N   +                   +   K    +  +
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFVKKRVFNSTVNNRLKQYCEELAI 241

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 242 PIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 337

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 103/303 (33%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +E+++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFEKKSEAVAFEKYTLYNHHNKEWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA        ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 340

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 76/304 (25%), Gaps = 40/304 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHI--- 119
           L   +S+Y       +++ N+  S+   F   +                  I  + +   
Sbjct: 10  LTEFLSQYL--PELKNVSSNTISSYCDTFRLFLEYCRDTEGMKIHKMSLCDIKPELVASF 67

Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWT 175
                  RK++ S+  Q L ++    ++   Q+   +     +     K +     R  T
Sbjct: 68  LEWLENERKNSISTRNQRLAAIHSFVRFVQTQDPKLLLNFQKILDIPIKKKASKPPRHLT 127

Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           KE++             G +       L  +  R  + C   V  ++    +        
Sbjct: 128 KEEVAVILRQPDILTLHGRRDATILCVLYDTAARAQELCDLRVADVRLEHPANVRITGKG 187

Query: 232 I-----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                       +           L          F N +   +              + 
Sbjct: 188 RKTRVVPLLPATMQNLKNYLSENRLLDPEKNHCPLFPNREGNHLTRAGLRYILTKYVQQT 247

Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
             N        S H  R   A    ++G     +    G   +     Y +   +  R  
Sbjct: 248 EENGDVISKRISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQA 307

Query: 333 IKNS 336
           ++  
Sbjct: 308 LEKV 311


>gi|261363825|ref|ZP_05976708.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria mucosa ATCC 25996]
 gi|288568408|gb|EFC89968.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
           [Neisseria mucosa ATCC 25996]
          Length = 289

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 82/279 (29%), Gaps = 18/279 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                  +            S +  E+   ++    G      +T   I + +   + + 
Sbjct: 15  WDEACLRWLDEKQGKK----SLVHDETKIRRLTAFRG-LYLHHMTKTVIMAEIAKLEGSN 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++  ++L  ++ L   A +               +   + IR  T ++ ++  +      
Sbjct: 70  ATKNRYLAFVQALLNKAAKDWEYLDGAPKLPRY-QEAKKRIRWLTPQEAERLIAA--LPD 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMT 248
                  F L +GLR S+      Q +            +T +   + +      +  + 
Sbjct: 127 YIAAMVVFSLNTGLRKSNVFGLKWQQIDFKRKVAWFHHDETKSGRALGVALNDAAVAVLL 186

Query: 249 PIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
               +         +          +K     AG+     H +R   A+     G + + 
Sbjct: 187 KQRGKHPEYVFTNNRCKPVKDVKKPWKKALQDAGIENFRWHDLRHTWASWLVQNGVSLYA 246

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           L    GW   D  + Y        L  ++  R + +++S
Sbjct: 247 LKEMGGWSDFDMVQRYAH------LAPEHLHRHAGLLNS 279


>gi|4098413|gb|AAD00268.1| putative integrase [Leuconostoc phage 10MC]
          Length = 348

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/348 (9%), Positives = 95/348 (27%), Gaps = 22/348 (6%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +E+ +             +R+        T    +              +        L
Sbjct: 6   YQEKVK--TYRVQVTTKGHKRVGKSGFRTKTEARKW--LTENELKIMTGKSDLIDSSKLL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                 + ++    ++   +   +++ +  I +          T +  +  +      H 
Sbjct: 62  SSYFEHWYETYK-TNVTDITLDQYKTTYRIIKKYLPHARLNNFTREQYQKFLNKYGKDHA 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSF 185
             +  +  T +    K A   + ++ +    +    +  K               +  S+
Sbjct: 121 KETVAKRKTHISACLKDAFADKLISEDITQRITLTGKAGKSSELKFLEADDFKRLEQYSY 180

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
               +  +LA    +++G+R  +     ++++      I   K                 
Sbjct: 181 DHLNNDSQLAIFIAIHTGMRIGEIRALKIKNVDFVQSKITIDKAMDGYGKIKAPKTAASN 240

Query: 246 AMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAG-VNKSAHGVRKFSATIS 297
            +  I K    +    +++            +        K    + + H +R   A+  
Sbjct: 241 RVIQIDKRLLDVLKRYKRVSGLLVQVTREAINHVLTKDLKKIEAKDVTFHALRHSHASYL 300

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
              G +   +    G   V   E  Y+     +R   +  ++I+ ++D
Sbjct: 301 LSKGVSIQYVSERLGHSNVGITENVYSHLLKTLRENEE--KKITDLMD 346


>gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040]
 gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040]
          Length = 334

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 98/331 (29%), Gaps = 23/331 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R G     +    G+R R    +         +        R      R+   T+  +  
Sbjct: 10  RGG--FCVYWHEGGKRRR----YSLKARTREEAEPEAIDVYRRETLDQRRGRDTVADIWE 63

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
            YR+          +  +       ++   G +   +ITT   R  V +R     +  + 
Sbjct: 64  AYRQDLGEKP----TAKTMGYTGKAVLAHFGAYRPDQITTSLCRKYVTNRTAEGKSQGTI 119

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L  +R   ++AV++  +      S+ERP + T   R   KE++              
Sbjct: 120 HTELGHLRSAMRFAVKERIIDK--APSIERPAKPTPKERYLEKEEIAALIDAA-SAPHIA 176

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP 249
           LA   L  +  R           +      I       KT     +   +  ++    T 
Sbjct: 177 LAIHLLFATAGRIGAVLDLTWDRVDFQRGIINLRLDDSKTRKGRAIVPMNSGIRAALQTA 236

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
                     +            F+A   +A ++  + H +R  SA      G    ++ 
Sbjct: 237 HDAALSDYVVEYAGGKVKNIRKGFEAACRRAELDGVTLHTIRHSSAVAMVSNGVPLEKVA 296

Query: 309 ATYGWKTVDQA-ETYTKGA-DRIRLGIKNSR 337
              G   V    +TY + A D ++   +   
Sbjct: 297 QYLGHSNVAITYQTYARFAPDHLQDAAEILD 327


>gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  S+ S    +           D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHIGVDIRKESIASYHSTRIHLQEFIQKKYKVSDLAFSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    I     V+  K   +  +   +   +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLHFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|206603943|gb|EDZ40423.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 330

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 99/333 (29%), Gaps = 28/333 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           K  G               A+         +  ++     + TTL   +  Y +      
Sbjct: 3   KKKGFGQIARTFDTKAAAEAWAKVTESEMTRGVFVTRKESENTTLDEALGRYEREVTPSK 62

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLF 144
                 +S             +     I  K I    + R    + ++  + LT +  +F
Sbjct: 63  KGRVQELSRLRILKN--SFLSNRSLASIQGKDIARYRDDRLKDVSEATLRRELTILSQVF 120

Query: 145 KWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           + A+++  +A   NP  ++  P  + E                 SE           + S
Sbjct: 121 RVAMKEWGMAGLANPVDAIRLPSGRGEVRNRRLLPGELDRICEASESPILSSIARLAIES 180

Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           G+R ++      + +     ++     K G    V L    +++L+  P   +       
Sbjct: 181 GMRQAEIAGMTWELVDLKKRTVTLLDTKNGEKRIVPLSSEALRILSGLPRRIDGKVWGVQ 240

Query: 261 KQKMNATQFSI------WFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHE 306
              ++             ++ +    G         + + H +R  + +   + G    +
Sbjct: 241 SHAVSVAWRRAVARARSAYEKECEGKGEKPDPSFLADLTFHDLRHEATSRFFEKGFNPMQ 300

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           + A  G KT+   + YT       L  ++  ++
Sbjct: 301 VSAITGHKTLQMLKRYTH------LKAEDLAKL 327


>gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio
           sp. 3_1_syn3]
          Length = 380

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 23/262 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQ 150
             I     +     IT   + +   S            + S   + ++ +  L    +  
Sbjct: 119 KYIKPAFENISASSITKLDVENFKNSLLECHQRNGSNLSRSYINKIISLLGRLINRGIEW 178

Query: 151 EYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCS 207
           + +    NP           +  R  T  +  +             +  +  L++G+R S
Sbjct: 179 DMINVAKNPISHTLFSDADKKRERFLTSSEASKILDGLRCIYCDAYIFAKISLFTGMRIS 238

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           +      Q++  +   +  +      +  +PD  +  L      ++           + +
Sbjct: 239 EIASINKQNINIDARIVHIEGKTGFRSAYIPDNLIS-LFTGLKNRDHPKYGERCFDKDVS 297

Query: 268 QFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             S +FK      G+             H +R    +  A  G   + +    G K ++ 
Sbjct: 298 TISRYFKMVVDAIGLNSNVEDSRYKVVFHTLRHTFCSWLAMKGVALYTIGELVGHKKLEM 357

Query: 319 AETYTKGA-DRIRLGIKNSRRI 339
            + Y K + D  R  +     +
Sbjct: 358 TKRYAKLSPDTKRDALNKISNM 379


>gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96]
 gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96]
          Length = 351

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVES 125
            TL+ L   +         +  +   +       +            +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSARTAQGYGERVRAFLAWCEPRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +             S +  L+++R+LF+W +++ ++  +P   +E PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           G    V +    +  LA              ++    ++     +        AG     
Sbjct: 199 GKDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                     H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
          Length = 404

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 94/325 (28%), Gaps = 27/325 (8%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
            + +    H    +    +A +    +        +    L     EY         + +
Sbjct: 51  PKTQAERQHNKEMLRQAEAARSARLVESHANKFQLEDRVKLASSFYEYYDRLTSTKESGS 110

Query: 91  S--RISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP----------SSAIQF 136
           +     + S    +    G  +  + +I  K +    +     P          ++A  +
Sbjct: 111 TSNYSIWVSAGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSY 170

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              +R     A R+  +  NP   V+  K +       T ++++            + AF
Sbjct: 171 FNKVRAALNEAYREGIIRDNPVQRVKSVKAENTKRTYLTLDEVRAMTKAECRYDVLKRAF 230

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLLAM 247
            F   +GLR SD  +     ++                       + ++LPD  + LL +
Sbjct: 231 LFSCTTGLRWSDINKLTWSEIEEFEPGHYRIIFDQQKLKNGGNSLVYLDLPDSAVTLLNI 290

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                    +    +  +           A +AG+  + + H  R   A    + G   +
Sbjct: 291 QNKEGPDDRVFVGLKYNSYMNV--ALLQWAMRAGITKHVTFHAGRHTFAVAQLNRGVDIY 348

Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330
            L    G   +   E Y    +  R
Sbjct: 349 SLSRLLGHSELRTTEIYADILESRR 373


>gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 72/257 (28%), Gaps = 17/257 (6%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
            +   +E     +           DF   +IT   I       + T              
Sbjct: 129 ATYRKYEVTRRHLAEFIQSKYNVSDFAINEITPMFITDFELYLRTTCKCGYNTTAKFMQF 188

Query: 144 FKWAV---RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           FK  +   R   + I    +  + + +       ++++++          +    R  F 
Sbjct: 189 FKRIILIARNNGILIGDPFASYKIRLEKVDRGYLSEDEIKIILKKKMVSERLENVRDLFI 248

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETF 255
           F  ++GL   D       +++ +        T    T    +  +  +        K   
Sbjct: 249 FSCFTGLAYIDVANLTQDNIRKSFDGNLWIITKRQKTNTDVNVPLLDIPKMILKKYKGNL 308

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312
                   ++  + + + K  A   G+ K  + H  R   AT +    G     +    G
Sbjct: 309 PDGKILPVISNQKLNAYLKEIADVCGIKKNLTFHLARHTFATTTTLAKGVPVETVSKMLG 368

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  +  
Sbjct: 369 HTNIETTQIYARITNNK 385


>gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 175

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--VELPDGFMKLLAMT 248
           +  L    LL +GLR S+ C   + ++     +I+  + G  +       D  + LL   
Sbjct: 2   RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDY 61

Query: 249 PIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
                +          +   +      +  K  +    + K  + H  R   AT+  D G
Sbjct: 62  IAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATMLLDNG 121

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
               ++    G   ++  + YT  +   
Sbjct: 122 VDIRQIQHLLGHSNINVTQIYTHVSQSK 149


>gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 403

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 22/271 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
              LI E R+S     +       + +Y   +           D  + ++    I S V 
Sbjct: 116 FATLIEEKRQSVGILIVKTTYTHLYRAYL-HLKEFLEYKYGVTDIPFTQVDFDFIESYVY 174

Query: 125 SRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             K     + S+    +  +R +   A+ +  +  +P      P+R T   +  + ++++
Sbjct: 175 YLKVNLQLSASTTNNTIKPLRRVVMRALNKGLMYQDPFFGYR-PQRITITRKWLSMDEIE 233

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      +        +  L+   +GL   D       ++       +        T   
Sbjct: 234 RLMQVDMKHESANFIRDMFLFSTFTGLAYVDLKNLRHDNIVRQEDGKQWIVLNRQKTRTT 293

Query: 238 PDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
               +     +L+                +        I  K  A  A ++K  + H  R
Sbjct: 294 SYIPLLDIPLRLIEKYRNTAFAGLDGKVFRLCTIENADIQLKKIAKAANIDKCLTYHMGR 353

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAET 321
              AT+    G     +  T G +++   + 
Sbjct: 354 HSYATLCLSMGVPIETISQTLGHRSISTTQI 384


>gi|329934920|ref|ZP_08284961.1| phage integrase [Streptomyces griseoaurantiacus M045]
 gi|329305742|gb|EGG49598.1| phage integrase [Streptomyces griseoaurantiacus M045]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 98/379 (25%), Gaps = 59/379 (15%)

Query: 14  ERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  R+G   +    +    G      +P           +   +         P++  TT
Sbjct: 24  KTDRYGIGLRYRARYIGPDGTEKSKSFPDRQKRKGEVWLSEVEADMASGQHVDPQRARTT 83

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +     +  SA        +R S  S      I   G         +HIR  +   +  
Sbjct: 84  FRQYAERWL-SAQSSDF--TTRESVRSQITGHAIPYLGSRPLGSFRPEHIREWLAELERA 140

Query: 130 --PSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              SS  + +  S+  L   AV   Y+  NPC             R       Q F+   
Sbjct: 141 VPASSYRRVIFASVSALLNAAVDDGYLHKNPCAVSSVKAPARNPGRLVPWTAGQVFRVRA 200

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGT 231
           +   Q R   +     GLR  +     V  ++     +                  K   
Sbjct: 201 ALPEQYRAVVDLGAGCGLRQGEIFGLAVPEIRFKTGWLHVGCQVKIVDGHLVFALPKRQK 260

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------------------- 272
              V L      +L           ++    + +    +                     
Sbjct: 261 ERDVPLSGHVADILRAHMKAHPPVSVSLPWGRPDGPLVTKRLLFVRPDGTGAVRRTDFNT 320

Query: 273 --FKAKATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
             +K    +AGV  +         H +R F A++  DAG     L A  G         T
Sbjct: 321 RFWKEAIVQAGVIPTPAAAREHGMHALRHFYASVLLDAGENIKALSAYLGHSDPGFTLRT 380

Query: 322 YTKGAD----RIRLGIKNS 336
           YT        R R  +   
Sbjct: 381 YTHLMPSSDGRARSAVDGL 399


>gi|229099135|ref|ZP_04230069.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-29]
 gi|228684363|gb|EEL38307.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-29]
          Length = 392

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 112/380 (29%), Gaps = 44/380 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALT-GSTPKR 58
             +  P +       G  ++ FR  +    G+R             AY   L   ++   
Sbjct: 6   KTKKDPELYYYFNTKGVKLWCFRHRYYDSLGKRREKYKQGYKLENEAYRDLLEVKTSILS 65

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI--- 114
             +   +    T+   +  + ++       ++S    E+     +    G +   ++   
Sbjct: 66  GEVKQVKNSNLTISEWLDIWYETHK-NEWKISSCSQRENAIKYQMKPLLGKYKLAELDKS 124

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T K +      +K+ PS+   F    ++    AV  E +  N    +  P  +      +
Sbjct: 125 TYKRVYINELLKKYKPSTVQLFHRLFKIAINAAVDDELIPRNRFNKITIPNEEKTVENFF 184

Query: 175 TKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKT 229
           T E++ +F +     E          L ++GLR  ++     +++     +    +T+  
Sbjct: 185 TAEELNEFIAAAKKHENITNYSIILLLAFTGLRKGEALGLQWKNINFEEKTLTVERTRDN 244

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------------------KMN 265
               T +  + F  +L    +  +        +                         + 
Sbjct: 245 KGTRTPKTKNSFRTILIDDTLINQLKAYRTWCKKTKLSFGLHLQDDDFIFISYQSGTPIT 304

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                  F+       + K + HG+R   AT+          +    G  T     + Y 
Sbjct: 305 DNPLMYSFQRILKHTTLKKITPHGLRHTHATLLISQRIPVKVIADRLG-NTPQMIFDIYG 363

Query: 324 KGADRIRLGIKNSRRISSVV 343
                  L  ++    S+ +
Sbjct: 364 HSF--KELEEESVAAFSTSL 381


>gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii
           DSM 18315]
          Length = 413

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 86  SLAVNSRISFESYFDQ---IIRKSGDFD---YRKITTKHIRSGVESRKHTPS----SAIQ 135
             +  +   +++   +    + +  + D   + +++   I++     K        + ++
Sbjct: 130 DYSPVTINRYKNVLRKLETFVPRFYEKDDITFHELSPDFIKAFDVFLKTEAGLCRNTIVR 189

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
           ++  ++ +   A+ +E++  +P    +  ++        T  ++Q   +   +  +  L 
Sbjct: 190 YMKCLKKITNMAIAKEWMRKDPFYGYKM-EQDETDPVFLTNNELQAIMNRNFDIPRLELV 248

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM------ 242
              F F  ++GL  +D      +HL+ +       + G               +      
Sbjct: 249 KDIFLFACFTGLAFADVSTLKPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANIPLLPVP 308

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
             +L                  +   + + + K  A   G+ K  + H  R   AT    
Sbjct: 309 LAILKKYESHPICLKQGTCLPVVCNQKANSYLKEIADFCGIKKNLTTHAARHTFATTVTL 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
                  E+ A  G  +    + Y +  D+
Sbjct: 369 ANNVPLQEVSAMLGHASTRMTQHYARVMDK 398


>gi|53724407|ref|YP_104507.1| phage integrase family site specific recombinase [Burkholderia
           mallei ATCC 23344]
 gi|121600634|ref|YP_994580.1| phage integrase family site specific recombinase [Burkholderia
           mallei SAVP1]
 gi|124383851|ref|YP_001027514.1| phage integrase family site specific recombinase [Burkholderia
           mallei NCTC 10229]
 gi|126449643|ref|YP_001082589.1| prophage DLP12 integrase [Burkholderia mallei NCTC 10247]
 gi|251767075|ref|ZP_02265905.2| prophage DLP12 integrase [Burkholderia mallei PRL-20]
 gi|254175100|ref|ZP_04881761.1| prophage DLP12 integrase [Burkholderia mallei ATCC 10399]
 gi|254183974|ref|ZP_04890565.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|254201585|ref|ZP_04907949.1| prophage DLP12 integrase [Burkholderia mallei FMH]
 gi|254206919|ref|ZP_04913270.1| prophage DLP12 integrase [Burkholderia mallei JHU]
 gi|254357475|ref|ZP_04973749.1| prophage DLP12 integrase [Burkholderia mallei 2002721280]
 gi|52427830|gb|AAU48423.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei ATCC 23344]
 gi|121229444|gb|ABM51962.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei SAVP1]
 gi|124291871|gb|ABN01140.1| site-specific recombinase, phage integrase family [Burkholderia
           mallei NCTC 10229]
 gi|126242513|gb|ABO05606.1| prophage DLP12 integrase [Burkholderia mallei NCTC 10247]
 gi|147747479|gb|EDK54555.1| prophage DLP12 integrase [Burkholderia mallei FMH]
 gi|147752461|gb|EDK59527.1| prophage DLP12 integrase [Burkholderia mallei JHU]
 gi|148026539|gb|EDK84624.1| prophage DLP12 integrase [Burkholderia mallei 2002721280]
 gi|160696145|gb|EDP86115.1| prophage DLP12 integrase [Burkholderia mallei ATCC 10399]
 gi|184214506|gb|EDU11549.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1655]
 gi|243063894|gb|EES46080.1| prophage DLP12 integrase [Burkholderia mallei PRL-20]
          Length = 369

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 86/334 (25%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R       Y      G  +       S    A                   K       
Sbjct: 5   KRNNSPNWYYRLTPPGGGPVVQGSTGTSNKAHAQELYDRLKVELWNQAKLGHKPRYLWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
            +  Y        L+  S  + +++   +           I    + +   +++  P   
Sbjct: 65  AVVRYVGDRE--GLS--SLETSKTHLRWLDPHLSGVALADIDRDRVDAIAHAKRCEPRVV 120

Query: 132 ----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           +  + +  +  +   AV  E++   P L   +   K        
Sbjct: 121 RTRNGPKPIGGTIGEGTVRRVIGVLMAVLHAAVEWEWLDRAPVLKRRKTTPKRVRWITPA 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL  S    A      +   +   +    
Sbjct: 181 QAERLLAELPAHLSDMARFSLETGLRRSNVTGLEWSQVDLARRVAWIHPDQAKARKAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++    D   + L+     +    +   +        +  ++    +AG+ +   H +R
Sbjct: 241 PLSDTAVDVLRRQLSKRRAAEHIERVFVYRGSAIGQPNTAAWRKALKRAGIRDFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLQVLKELGGWETLEMVQRYAH 334


>gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1]
 gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1]
          Length = 325

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 94/313 (30%), Gaps = 31/313 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYR 112
           K +   + R  P  +K  +  +R+   +  +  ++  +        +            +
Sbjct: 13  KPQRKENVRDDPR-IKQWVERFREEREFDGIKPSTIRNDILRITIFLDFVYNRLNKEPDK 71

Query: 113 KITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-------INPCLSVE 162
            + +  +R        RK + ++  ++   ++V ++ A  Q +                E
Sbjct: 72  LVNSDFVRFFNYLERERKLSRNTQDKYFQLLKVFYRLARLQNFRKFAEESSERKRFRRYE 131

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
                        +   +   S      +  L    L  +G R S+      +       
Sbjct: 132 VKHYDAVDGGILNEILQKILSSNSRTNIRNSLIIRMLWDTGCRVSELLNIRYKDCDFEEG 191

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWF- 273
            F I+  K      V   +  ++ L                F   D +++N    +  F 
Sbjct: 192 TFRIRNTKGKEERIVVCSNDTLEALRYYIQYNIDKSPDAPIFQTVDGKQINRNTITHVFS 251

Query: 274 ---KAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              K    +  + ++     H +R   A    + G     +    G K++D    Y+   
Sbjct: 252 NVIKELKKEGKIPQNKRIVLHSLRHGRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSN 311

Query: 327 DRIRLGIKNSRRI 339
           DR    +K+ +++
Sbjct: 312 DRANSMLKDIKKL 324


>gi|328884043|emb|CCA57282.1| integrase [Streptomyces venezuelae ATCC 10712]
          Length = 381

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 94/342 (27%), Gaps = 35/342 (10%)

Query: 18  HGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            G+    +R    G     P+  ++            +   R    +P            
Sbjct: 19  SGRWQARYRDPLSGETKSAPHTFDTKTDALVWLTTIEAEIIRGTYQAPDAGKVAFGPYAD 78

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---S 132
           ++ K      L   +R   ES     I    G      ITT  +R+   +   +     +
Sbjct: 79  DWLKH---RKLEDRTRERSESVIRLHIKPTFGAGTLAAITTPRVRAWRTALLESGVGEPT 135

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            ++    +R +   AV  E +  NPC      +         T  ++       +     
Sbjct: 136 VVKAYQLLRAILNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEVYA--VADAIRPHH 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------ITV 235
           R+      ++ LR  +      + L      +  ++  +                    V
Sbjct: 194 RVLVLLAAFTTLRFGELASLRRRDLDLTRSVVLVRRAQSELQDGTLADKAPKSAAGVRPV 253

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGV--NKSAH 287
             P   +  L            +    +         + F   + A    AGV  +   H
Sbjct: 254 AFPAELVPELTHHLEHFAGAGQDGHLFQGPRGGLLRRSNFRDDWTAARAAAGVSGDVHFH 313

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +R    T+++ AGA+  ELM   G  T   A  Y       
Sbjct: 314 DLRHTGNTLASSAGASTRELMTRMGHSTTRAALIYQHMTSDR 355


>gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7]
 gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7]
          Length = 372

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 100/354 (28%), Gaps = 53/354 (14%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                       + E  +         + +I  +       +    +        D++I 
Sbjct: 18  AEKEVQRIAILFEEECAHGQVTAAVKFQKVIEMWATEYAELNHRSTTLQREHLIADRVIP 77

Query: 105 KSGDFDYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYV 153
             G     KIT + I+  + S              +  +    L+ +  +F++A+R + V
Sbjct: 78  ALGHLRIDKITARDIQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMV 137

Query: 154 AINPCLSVERPK-------RKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLR 205
             NPC  V  PK        K      +TKE  ++F     E      + F   +Y+G R
Sbjct: 138 NTNPCSKVMIPKIDASGKAYKKPEKHIYTKEQAREFMKILREAPMKYKVFFTLAIYTGCR 197

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGT-------------------------------IIT 234
             +      +++     ++K   T                                    
Sbjct: 198 RGELLGIEWKNIDFERGTVKIDHTSNYTADKGIYSDATKTERSTRMVDLPPAVIGLLKAY 257

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
               D +   L       +  F   D Q M+      W   +  +        H  R F 
Sbjct: 258 KHDQDSYKANLGDEWQEHDRLFTKWDGQPMHPNTPYTWLMRECERRNFPFYGLHSFRHFF 317

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRRISSVVDS 345
           A++  +AG     + A  G  T      TY+   A+  R        +    ++
Sbjct: 318 ASVEIEAGVDPTTVAAMLGHSTPVTTMSTYSHYFAESKRRASNIMAEVIEGKEA 371


>gi|55980996|ref|YP_144293.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
 gi|55772409|dbj|BAD70850.1| DNA integration/recombination/invertion protein [Thermus
           thermophilus HB8]
          Length = 391

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 111/373 (29%), Gaps = 55/373 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIR-----LPYPHES-------TFIPAYMSALTGSTPKREY 60
           + R + G  ++Y   G G+ +       P                    AL      +  
Sbjct: 2   RRRGKGGGSVFYHE-GKGKWVAQLTWIDPATGRKVKREKHCETRKEAERALADMVVAQAK 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDY 111
                    T +    +Y K      L  NS    +      +            G    
Sbjct: 61  GLLTDPSRLTTRDFALDYLKRLEREGLRPNSIRLAQEELAHALPSLKDPKAHDPLGRMRL 120

Query: 112 RKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           +++   H+R+ V+      + P +  + L  ++ LF+ A+R E VA NP  +V     K 
Sbjct: 121 QEVKPVHVRAAVDRVAEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVRLRLPKG 180

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           E      +          +E S+ +   L    +L +GLR  ++     + +      + 
Sbjct: 181 EKTARALEPQEVARLLETAEASRSKDMALLLRLMLETGLRRGEALALQWRDIDLEAGELT 240

Query: 226 TQKTG------------------------TIITVELPDGFMKLLAMTPIGKETFFI-NND 260
             ++                           + + L     +LL      +         
Sbjct: 241 VWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEVDGLFLVGG 300

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318
            + ++   F+ + +  A +AG+ +   H +R   AT++   G     +    G  +    
Sbjct: 301 VKPVDPDAFNHYLRRLAERAGLGRVRVHDLRHTWATLALSRGVPLEVVSERLGHASPTIT 360

Query: 319 AETYTKGADRIRL 331
              Y    +  R 
Sbjct: 361 LNVYRHLLEEERR 373


>gi|330431293|gb|AEC16352.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 312

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 85/307 (27%), Gaps = 40/307 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  +   L+ ++        L   ++ S+        R        +IT + +      +
Sbjct: 9   ESLSFDDLLEKFL---MMKYLRPETKKSYRKMVSLFTRSYPGILADEITKELVCKWRNEQ 65

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK 183
             K   +S   +L + + +  W +    +            K   +  +  T++D+    
Sbjct: 66  LSKLRETSVNSYLRNCKAVINWGIENNLINRIDNPFCGTFVKEPRKQRKIITQKDINILI 125

Query: 184 SFWSEGSQPRLAFEFL-------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
              ++    +L                  LY+G+R S   +  + ++  +  +I      
Sbjct: 126 KCITQEDVEKLCGNGYCTIAFAQALIFTLLYTGMRRSQLLKLKIHNIDLSSRTIFIPHNI 185

Query: 231 TIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMNATQFSI 271
                +        L                                 +   M   Q + 
Sbjct: 186 NKNNDDHMIPISSKLYPYLAVFLDELKIRKIPIDSQLFNINIFSSTTRNNGNMTNDQLAH 245

Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK-GADRI 329
           +F+  +    +  S+H  R   AT    +     +      G + +    +Y +   D +
Sbjct: 246 FFRKLSKITRIKLSSHRFRHTIATQLMRSPEQNLYAAQKLLGHRDIKTTLSYIEFDVDML 305

Query: 330 RLGIKNS 336
           R  + + 
Sbjct: 306 RKVVDSI 312


>gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026]
          Length = 391

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/381 (13%), Positives = 112/381 (29%), Gaps = 58/381 (15%)

Query: 14  ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + + GK  Y F     +  +G R+++      T+  A    +     + +  N  ++K 
Sbjct: 12  YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEAET--VFNKLSQTKPDNFVKQKQ 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +  L   + ++     +  ++    +  F + +I   G+    KIT   ++   + + 
Sbjct: 70  IKVSKLRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    +     LF++ +R  YV+ NP   +  PK+ +   R        + +    
Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDELNQF 188

Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------QNNIFS 223
                  G      F+ L  +GLR S++     Q +                     I  
Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSVNKTLAYGLDNKTIIQ 248

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFK------ 274
                    I          L+      K          K    + S    W K      
Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308

Query: 275 -----AKATKAGVN--------KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319
                  A    +          + HG R   AT+  A+       +    G + +    
Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368

Query: 320 ETYTKGADR-IRLGIKNSRRI 339
           + YT   ++     +   +++
Sbjct: 369 DIYTHVNNKNKEDAVNALKQL 389


>gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
 gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827]
          Length = 643

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 26/278 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH--- 128
             +Y         A ++R +      + +R     G  +   +T  H+R  + S+ +   
Sbjct: 25  FDDYL--LQARGFARSTRETSIRIVGRFLRDKFNDGAINLSTLTPAHVRDFLASQANVYR 82

Query: 129 TPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
           TP S    ++S+R  F+W    + +   +   L+     ++    +  + ++++Q     
Sbjct: 83  TPVSFSLVVSSLRGYFRWRIMQKDDLYVLIGALANPANWQQASLPKSLSTDEIEQLLNSL 142

Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---- 238
                 G +        L  GLR  +  R  +  +     +I  ++T       +P    
Sbjct: 143 GQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDWVSGTITLRRTKGRRDDVMPLPVT 202

Query: 239 --DGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290
             +     L                    ++ ++ +  SI  +   T+AG+  + AH +R
Sbjct: 203 TGNAIAAYLQNGRPKTLHREVFASHKTPRERPISRSVVSIAIRQVYTRAGLQYTSAHLLR 262

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              A      GA+  ++      ++++    Y K   R
Sbjct: 263 HTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSR 300



 Score = 43.2 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 83/300 (27%), Gaps = 43/300 (14%)

Query: 75  ISEYRKSAHWGSLAVNSRISF--ESYFDQIIRKSGDFDYR-KITTKHIRSGVESRKHTPS 131
           +  Y     +      S  S+   S+   + R +       ++ T+    G  +     S
Sbjct: 330 VECYLSEKRYLGF-EMSHASYCLRSFARYVQRANHQGPLTLELMTEWASKGRFTEAVPIS 388

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------- 183
            A   L  +R   +W    E     P  SV   K +      +++++++           
Sbjct: 389 MAHGRLKYLRTFMRWLQFSEPEHEVPDGSVCGRKPERGTPHIYSEQEIEDLLAAAKRLGP 448

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGF 241
                G      F  L  +GLR S++    +  +        I+  K G   ++ L    
Sbjct: 449 HNSIRGLLYETLFGLLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPST 508

Query: 242 MKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK-- 284
            K L                          +   +++   Q    F+A   + G VN+  
Sbjct: 509 SKALHQYLNQRKLTRAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGT 568

Query: 285 ----SAHGVRKFSATI----SADAGATAHE----LMATYGWKTVDQAETYTKGADRIRLG 332
                 H +R              G         L    G  ++ +   Y +    +   
Sbjct: 569 HHAPRIHDLRHSFVVRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWYLQAVPELMAA 628


>gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 319

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 84/282 (29%), Gaps = 34/282 (12%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP--- 130
           E+  +         +R ++++         G     D+R++T  H+ +     +      
Sbjct: 31  EWFANLDNR----RTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAG 86

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           ++  + L ++  LF + +    V        +   R +              +Q      
Sbjct: 87  ATIRRKLAALASLFDYLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPD 146

Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
               +G + R     LLY GLR  ++ +     LQ        +  G             
Sbjct: 147 TETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPV 206

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286
                    +   +  A       +         + A       +A A KAG+   +   
Sbjct: 207 AAERIYAYLEQDSERAAKPGPLFRSLRGTTTGAAITANGIYSVVEAYAKKAGIVVEHLGV 266

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           HG+R  +AT + +  A   ++    G   +     Y +   R
Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|56392785|gb|AAV87153.1| integrase [Streptococcus pyogenes]
          Length = 387

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 49/361 (13%)

Query: 11  VTKERTRHGKIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + ++G I+Y            G+R++       T       A           ++ 
Sbjct: 9   ITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITG-RTRKEVNQKAKHAQFDFLSNGSTI 67

Query: 65  RKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
           ++K    T K L   + ++     +   +  +  +     I+   G+    KIT   I+ 
Sbjct: 68  KRKVVIKTFKELSHLWLETYKLT-VKPQTYDATVTRLNRHIMPTLGNMKVDKITASDIQM 126

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIRPWTKED 178
            +        +     + +R + +  V    +  N    +  P+++    + ++     D
Sbjct: 127 LINRLSKYYVNYTAVRSVIRKVLQQGVLLGLIDYNSARDIILPRKQPNAKKKVKFIDPSD 186

Query: 179 MQQFKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           ++ F          R       + ++ LL +GLR  ++C      +     +I   KT  
Sbjct: 187 LKSFLEHLETSQHKRYNLYFDAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYN 246

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFS 270
                            + +    ++ L +  + +   F                   F+
Sbjct: 247 KNLKFLSTAKTQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFN 306

Query: 271 IWFKA-----KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
              +      +  +AG+ + + H  R   A++  +AG +  EL    G   +    +TY 
Sbjct: 307 ASVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHANISMTLDTYG 366

Query: 324 K 324
            
Sbjct: 367 H 367


>gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
 gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 86/271 (31%), Gaps = 21/271 (7%)

Query: 79  RKSAHWGSLAVNSRISF---ESYFDQIIRK-SGDFDYR--KITTKHIRSG----VESRKH 128
            K+      A  +  ++        + I+      D    +++ + I       ++ + +
Sbjct: 121 LKARIGIDRAKGTYPAYYYMRRTLGEFIQWQFKTKDIAFGQLSEQFIHDYQNFVMDVKGY 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +   +L  ++ + + A ++ Y       +   PK+     R  ++ED ++ +     
Sbjct: 181 AVDTVRHYLAILKKICRIAYKEGYAERCHFANFTLPKQSERTPRALSREDFEKIRDVEIP 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM- 242
             +      R  F F  Y+G   +D+      +L  +       K             + 
Sbjct: 241 ACRTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDDGNLWLKYRRKKNELQASVKLL 300

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-A 298
            + LA+     +           +        K+ A  AGV+ +   H  R   A++   
Sbjct: 301 PEALALIEKYHDDNRPTLFPMVRHPN-LRQHMKSLAVLAGVSSTLCYHQARHSFASLITL 359

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +AG     +    G   +   + Y +   + 
Sbjct: 360 EAGVPIETISRMLGHSDITTTQVYARVIPKK 390


>gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328]
 gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328]
          Length = 359

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 76/270 (28%), Gaps = 34/270 (12%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
             + S  ++   +             +      R    SS I  +  ++  + +      
Sbjct: 81  EHYLSIDEKFYEQVEKRHVND----FLAELKLERNLKESSVITKIRQLKSFYSYLEEHYD 136

Query: 153 VAINPCLSVERPKRKTEGIRPWT-------------KEDMQQFKSFWSEGSQPRLAFEFL 199
           +  N   ++  PK +       T               +  +         + +     L
Sbjct: 137 I-KNNVKNIRIPKAEKNLPVYLTLEEAVSLVNVVDKDIEQHKGTKTKWICVRNKCMIVML 195

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK------- 252
           L   LR S+     ++ ++ +       K     T+ L D   + +      +       
Sbjct: 196 LNCALRRSELRSINIEDIKEDYII-VMGKGAKERTIYLNDLTKQSINDYLRVRPKDAKDN 254

Query: 253 ---ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAH 305
                    +   +++  +     K    +A +N    S H +R  SAT+    G     
Sbjct: 255 KALFITKNKHTYSRISCERIGDVVKKYLREANLNDQLFSTHKLRHTSATLMYQHGNVDLR 314

Query: 306 ELMATYGWKTVDQAETYTKGADR-IRLGIK 334
            L    G  +    E YT   D+ ++  + 
Sbjct: 315 SLQQILGHASSKTTEIYTHVYDKNLKRAVN 344


>gi|88856274|ref|ZP_01130934.1| integrase [marine actinobacterium PHSC20C1]
 gi|88814593|gb|EAR24455.1| integrase [marine actinobacterium PHSC20C1]
          Length = 402

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 109/368 (29%), Gaps = 54/368 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGS---------TPKREYINSPRKKPTTLKWLISEY 78
             G+R R P  + S            +                 +   +  TL     ++
Sbjct: 3   PDGKRYRGPKSYASKTEARAWLTRVRTLLDSGDWNVASASADGAAKAGRTETLGPYAEKW 62

Query: 79  RKSAHWGS---LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSA 133
             +    +   LA  ++  + S+  +++    +     IT   +R   E+ + T   + +
Sbjct: 63  VLNRVKTNGEPLAPLTKKDYLSFIRRLLPPLSEMRIAMITPTDVREWNEALRATGKITQS 122

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            +  T +R + + AV    + ++PC  V        GI        +          + +
Sbjct: 123 ARVYTVLRSIMEQAVDDGIIQVSPCK-VRGAGNAVTGIEVKPPTAAELETIMKVIDPRFK 181

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL-----------------------------------Q 218
                  ++ LR  +      + +                                    
Sbjct: 182 TMIVLGAWAALRFGEVTELRRKDILIVEEGTAKAPRTTIYVDVSRGVTHIPGEGFILRPP 241

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
            +   ++       +   + +     +   P       ++     + A+ ++ ++     
Sbjct: 242 KSRAGVRIVALPPHVNDIVLEHLRDRVGEDPESLIYEAMSGGGHHLAASTWTDYWYPARE 301

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            AG  +   H +R F AT  A  GAT  EL    G  T + A  Y     R   G + + 
Sbjct: 302 AAGRGDLHFHALRHFGATAYALTGATIRELQDRLGHTTPNVAMRYQHTTGR---GAELAA 358

Query: 338 RISSVVDS 345
           ++S +  S
Sbjct: 359 KMSELHAS 366


>gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
 gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp.
           MED297]
          Length = 332

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 82/323 (25%), Gaps = 51/323 (15%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +    P    I  P K        + ++R       LA  +  ++  +  + IR S    
Sbjct: 1   MKKPEPIDIRIALPEKPKG----FLDQFRVFIRSRGLAYATEKTYLLWAKRYIRFSKYQS 56

Query: 111 YRKITTKHIRSGVE----SRKHTPSSAIQFLTSM----RVL---------FKWAVRQEYV 153
            +    + I S +      R  +P++    L ++    R           F +A R+  +
Sbjct: 57  PKDFKLQDIDSFLNYLAQQRFCSPNTQATALNALILLYREFLGFDTTGLDFNYAKRRPKI 116

Query: 154 AINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL-------- 204
                 S  +   ++  G++    + M       SE    R+        GL        
Sbjct: 117 PTVLSKSEADAIIQELGGVQKLVTQLMYGSGLRISEALNLRVKDIDFANGGLFVMEAKGD 176

Query: 205 ----------------RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---FMKLL 245
                                     +  Q+   +                    +  L 
Sbjct: 177 KSRRTLLPSSLHQSLTSQIAFVEHTFEADQSIGKAGVYLPDALSRKWPNAQFELGWQYLF 236

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGAT 303
                  +       +  ++  Q     K       +NK    H  R   AT     G  
Sbjct: 237 PSNVYSVDPRSGVERRHHISRDQVQRAIKRAVKGLKINKRVSCHTFRHSFATELLRQGTD 296

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              +    G  +V+  + YT   
Sbjct: 297 IRNIQEILGHSSVETTQIYTHVV 319


>gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
 gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris
           F0302]
          Length = 285

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 82/259 (31%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           ++ ++K     +LA N+  S+    +   +       +++  K++ +          P +
Sbjct: 20  VTTFQKHLAKTNLAPNTITSYVWTVNYFFKHY-----KEVNKKNLLAYKGFLVESFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    +++ +++       +  +           +     +     + E    
Sbjct: 75  VNLRLQAINKFLEYSKQEKLKVKFVKVQQKNFLENVISDADYKFLKTKLKADGYDE---W 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+  +   +H+Q     + ++           +      K +    
Sbjct: 132 YFIIWFMAATGARVSELLQIKAEHVQVGYLDLYSKGGKIRRLYIPKNLRTEANKWIKEKG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N    ++     +   K  A K G+N+     H  R   A    D       
Sbjct: 192 LTSGYIFLNRFGNRITTRGIAQQLKYFAEKYGINRDVVYPHSFRHRFAKNFLDRFNDLAL 251

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 252 LADLMGHESIETTRIYLRR 270


>gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 332

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 75/270 (27%), Gaps = 22/270 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK- 127
           +W I E+        L   +R  +      I       G     ++    +R  + +   
Sbjct: 50  RWRIDEFLAENV--QLRPATRRRYRVVLSNIQARAASLGAASPAQLDAHVLRRLLAAPGS 107

Query: 128 ---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              + P++       +R    W   +  +A+   L+    +R     R   +  +     
Sbjct: 108 NGPYAPATRDLERVVLRRYLVWEGSEGALALAAQLAAFARRRPRPLPRGIDETTLGSTLD 167

Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
                  ++     E    +GLR S+ C      L      +  +      T  +P    
Sbjct: 168 GLDARADARAMAILELAYATGLRASELCALDRSDLGPGDRWLVVRAGKGGRTRRVPIGEA 227

Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                   LA          +     +++        +       ++   H +R   AT 
Sbjct: 228 ARTALRAYLATRDDDAPALLLGARGARLSPRGLQRLTRRY-----LDVHPHQLRHAFATH 282

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             D GA    +    G   +   E YT  +
Sbjct: 283 LLDHGADVRSIQELLGHARLATTEIYTHVS 312


>gi|221640425|ref|YP_002526687.1| phage-related integrase [Rhodobacter sphaeroides KD131]
 gi|221161206|gb|ACM02186.1| phage-related integrase [Rhodobacter sphaeroides KD131]
          Length = 432

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 107/362 (29%), Gaps = 31/362 (8%)

Query: 9   PFVTKERTRHGKIIYYF--RKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS- 63
           P +      +G+ ++ F  R   G + +  L    +++   A  +AL       + ++  
Sbjct: 29  PGLRLRIYPNGRKVWSFEKRIKGGPKRKHLLGTYPDTSIKEARAAALEIELEASKGVDRV 88

Query: 64  PRKKPTTLKW--------LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKI 114
              +   L          L+++  ++     LA   S+        + +    D   R++
Sbjct: 89  AEAEKAKLDAEERKRKAVLVADVVEAHRALHLANLRSQRDRLRTLKEALAPHMDQPVREL 148

Query: 115 TTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               +++ ++ +    +   A +   ++    K+A ++ Y   +  L +E+  ++    R
Sbjct: 149 RRADLQAAIDRKAAAGALIQANRTKAALSKFAKFAWQRGYTDDHIGLGLEKAVQEQPRDR 208

Query: 173 PWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             + E+++      +  GS        L+ +  R S+        +  +   +      T
Sbjct: 209 VMSLEEVRAVYDATFQMGSLWGPLVRMLVLTLQRRSEVAGLKWSEVDFDGECMTVAGGRT 268

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NK 284
                        +                     T     F     +  V         
Sbjct: 269 KNRKMHKTHLAPPVLADLRELRAASSVEQVFTTTGTTPVSGFSKVKERLDVLLPEDMEPW 328

Query: 285 SAHGVRKFSATISADAGATAHELMATYGW-----KTVDQAETYTK--GADRIRLGIKNSR 337
           + H +R   AT  A+ G +   +                A  Y +     + R  +    
Sbjct: 329 TFHDLRTAFATQMAEDGESEAVIDRILNHVASGSAPSSVARVYNRSEHLGQRRRILNRWA 388

Query: 338 RI 339
            +
Sbjct: 389 AL 390


>gi|29566457|ref|NP_818023.1| gp50 [Mycobacterium phage Che9d]
 gi|29425182|gb|AAN07968.1| gp50 [Mycobacterium phage Che9d]
          Length = 424

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/392 (10%), Positives = 96/392 (24%), Gaps = 76/392 (19%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y   G  ++ R+      T +     A                +  T++  ++ +    H
Sbjct: 36  YDENGKRKQKRVYSKDYRTLVTKLEEA-----KLEATDGINLDRTVTVEKWLAYWLPHVH 90

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
              +   +   +    + I+   G      +    IR    +       A +    +   
Sbjct: 91  KERIRPTTYRDYGHTVNNIVAVIGRKKLADLQPADIRRMHTAIGRGERRAEKAHVLLNRA 150

Query: 144 FKWAVRQEYVAINPCLSVERP------------------------KRKTEGIRPWTKEDM 179
            K AV +  +  N   +V+ P                                 W    +
Sbjct: 151 LKDAVAEGLLRRNVMDAVDPPEVYRGVRNAFTIEQSQLLLDYAQQHCNKMEFTRWMMAFL 210

Query: 180 QQFKSFWSEGSQP--------------------RLAFEFLLYSGLR-------------- 205
              +     G                       R         G+               
Sbjct: 211 TGARKAECLGLTWDRVDLDASAIDISWQLQQLKRAHGCGKAVDGVWPCGRKHGSRCTDPV 270

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINN 259
                +   + + +++   + +       + + +    LL         P      F   
Sbjct: 271 WDLPVKFEYRPVVDSLVFTRPKSKAGQRWISIVEPLRDLLAELKGLDQGPNPYNLVFHRG 330

Query: 260 DKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           D   +  T  S  ++A     G+     + + H  R  +AT+    G      M   G  
Sbjct: 331 DGYPVTPTDDSRAWRALCDSVGIVAAEGSLTLHSARHTAATVLRSNGVDEQTRMEILGHN 390

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           + + A  Y   AD+ R      + + +++   
Sbjct: 391 SPEVARVYAH-ADQARNSA-AMQALLTLLPER 420


>gi|56479230|ref|YP_160819.1| integrase or site-specific recombinase [Aromatoleum aromaticum
           EbN1]
 gi|56315273|emb|CAI09918.1| Integrase or site-specific recombinase [Aromatoleum aromaticum
           EbN1]
          Length = 425

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 104/322 (32%), Gaps = 30/322 (9%)

Query: 43  FIPAYMSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              A  +   G +P R+  +  R  ++  T K     + + A    LA ++    +S  D
Sbjct: 86  LARAKNAVSRGESPARDKADGKRELRESGTFKAFAEIWLRDA---GLADSTVAMRKSILD 142

Query: 101 Q-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           + ++ K G     +IT+  +    E  K    P++A+     ++ +++ A+ +     NP
Sbjct: 143 RDVLPKLGKRKLEEITSSQVFDLCEKIKERGAPATAVHAREIIQQVYRHAMARGLKIENP 202

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRA 212
             +V+     T   R       +    F    S       +LA +F+L S  R  +  +A
Sbjct: 203 AENVKASAIATFKPRERALTPGEIRTFFTVLDSVGTLPTLKLALKFILLSMCRKGELLQA 262

Query: 213 GVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQK 263
             + +           +        +     + L                        + 
Sbjct: 263 TWKEVDFEAATWTVPAERMKARRPHVVYLSQQALDLLVGLKTCAGSSPYLLPGRYETDKP 322

Query: 264 MNATQFSIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVD 317
           M+    +    A   KA            H +R+  +T+  +AG     +      +   
Sbjct: 323 MSEATLNRVIAAVVEKAQKEGHELPHFCVHDLRRTGSTLLHEAGFNTDWIEKCLAHEQRG 382

Query: 318 QAETYTKG--ADRIRLGIKNSR 337
               Y K   A++ R  +++  
Sbjct: 383 VRAVYNKAEYAEQRREMLQSWA 404


>gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 413

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 87/272 (31%), Gaps = 22/272 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSS 132
            ++      +  +   +++ +   +          DFD R I    I       +     
Sbjct: 120 MEALIGQEFSAGTFERYKTSYKHTLDFLEWKYSTTDFDIRNINHAFITDYDFYLRTVRRC 179

Query: 133 AIQF-LTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A    +  +R      +  ++  ++A +P ++    K K       T+E+++  +     
Sbjct: 180 ANNTTIKYIRNFQKVVRICLKNGWLAKDPFVNY-SVKLKEVTRTFLTEEEIEAIQKKKFV 238

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----G 240
             +    R  F F  ++GL  +D        +Q  I + K   T    T  + +      
Sbjct: 239 SGRLDQVRDIFLFSCFTGLAYADVKELKKSDIQKVISAEKWIMTKRKKTDTVCNIPVLPP 298

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS- 297
             +L+            +     ++  + + + K  A   G+ K  + H  R   AT   
Sbjct: 299 VEELIQKYKDDPRCENADCLLPVISNQKMNSYLKEIADVCGIQKELTFHIARHTFATTVT 358

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G +   +    G   +   + Y K  D+ 
Sbjct: 359 LTNGVSIESVSKMLGHTNLKTTQHYAKILDKK 390


>gi|307610785|emb|CBX00398.1| hypothetical protein LPW_21181 [Legionella pneumophila 130b]
          Length = 386

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/332 (10%), Positives = 88/332 (26%), Gaps = 31/332 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G++ +  ++  G RIR       +   A           R+      +   + K    
Sbjct: 11  KRGQVWHIEKQVLGHRIR-ESTGTKSLQEAEQYLARRIEEIRQATIYGVRPKRSFKEAAV 69

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSA 133
            +            S  +       I    GD    ++   T +      +  K    S 
Sbjct: 70  RFLNENQHK----ASIDTDAILLKSICPFIGDLTLEQVHIGTLQSFIKAKQEAKLKTKSI 125

Query: 134 IQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
              L  +R +        + +  +         +     +   P      +Q +   +  
Sbjct: 126 NNTLELVRHILNVAATEWIDENSLTWLLVAPKIKLLPVKDARAPLPLSWSEQSRLLEALP 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQH-----------------LQNNIFSIKTQKTGTI 232
                   F + +G R  + C+   +                  +  +    +  K G  
Sbjct: 186 FHLNQMARFKVNTGCREQEVCQLRWEWEKHVPSLNTSVFIIPSHINRDGELRQLVKNGED 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L D    ++         F  + + + +     +  ++    KA + +   H ++ 
Sbjct: 246 RLVILNDEAKAVIEEVRGIHSEFVFSYNGKPITRMN-NTAWRNARKKANLCDLRVHDLKH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
                   AG +  +     G ++      Y+
Sbjct: 305 TFGRRLRAAGVSYEDRQDLLGHRSGRITTHYS 336


>gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32]
 gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32]
          Length = 326

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 101/315 (32%), Gaps = 41/315 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSG----DFDYRKITTKHIRSG 122
           +      +  +      + ++  ++          ++ + G    D +   +T   +RS 
Sbjct: 9   VSEAQQAFFAARRPRKDSPHTTDAYRRDLAGITTLLVSELGRPAEDLEVADLTGPALRSA 68

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  SS ++  ++      + V    +A NP  +V RP+      +P   E+  
Sbjct: 69  FGAFADGHAKSSVLRAWSTWNQFLTFCVADGLLAGNPMGAVARPRTPALTPKPLRGEETP 128

Query: 181 QFKSFWSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +     +             +  L     L +GLR ++      + L      ++    G
Sbjct: 129 EQLLSAAAAGSRRARDPWPERDVLVIALGLVAGLRAAEMRALSARSLVGRAGELRLHVKG 188

Query: 231 T---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKA 275
                 ++ +     +L+          F N      +                    K+
Sbjct: 189 KGSRDRSIPVQPVLAELIERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGALEYLVKS 248

Query: 276 KATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               AG++         H +R   AT  A+ GATA E+MA  G  ++  ++ Y +   R 
Sbjct: 249 CYRGAGLHDRVPAGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGRE 308

Query: 330 RLGIKNSRRISSVVD 344
           +     S R    +D
Sbjct: 309 QRAAAASNRTYRALD 323


>gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 196

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 15/173 (8%)

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLA 246
           EG + R   E L   GLR S+     +  L  +  F     K      V +    +  + 
Sbjct: 17  EGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAINEIK 76

Query: 247 MTPIGKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
           +    +    +    +             +        K  A KAG+ K  S H  R   
Sbjct: 77  LYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTFRHSF 136

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           AT   + GA    +    G +++   E YT   DR  L  +        +   
Sbjct: 137 ATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNMLRSEIIEHHPRNIKYR 188


>gi|206601439|gb|EDZ37930.1| Integrase [Leptospirillum sp. Group II '5-way CG']
          Length = 316

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 30/302 (9%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             +  +++    + TTL   +  Y +         +       ++ +     G      I
Sbjct: 1   MDRGAFVSRKEAENTTLAEALDRYEQEISQKKKGYSKEKDKIDHWRK--SFLGSLFLGTI 58

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEG 170
            +  +    + R    +P++  + L  +  +F  A +   +   INP  +V RPK     
Sbjct: 59  RSSDLSKWRDERLKTTSPATVNRLLNLLSHVFTVAAQDWGMGGLINPVRNVRRPKNPPAR 118

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            R     ++++  +     +   + + F + +G+R  +  +     +      ++   T 
Sbjct: 119 ERRLFPGEIERIIAATGSQAIGDVIW-FAIETGMRRKEIAQMKWADVGMEEGILRIPDTK 177

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--------- 281
           T           K L +                      +  F+    +A          
Sbjct: 178 TD--PRTIPLSTKALRILSSLPRRIDEKVWGYDEKGLGITRVFQEALKRARAVYEKECEE 235

Query: 282 ----------VNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIR 330
                     V+ + H +R  + +   + G     E+ A  G KT+   + YT   +  R
Sbjct: 236 KGEKPDSAFLVDLTFHDLRHEATSRLFELGIFDVTEVSAITGHKTLQMLKRYTHH-NPSR 294

Query: 331 LG 332
           L 
Sbjct: 295 LA 296


>gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
 gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 93/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 36  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 93

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++    ++  ++    E     +   K G      I     +      K
Sbjct: 94  MTLCQLYAK--QNTQRANVKKSTMKQREQLMRLLKEDKLGARSIDTINPSDAKEWALRMK 151

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 152 DKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 211

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   +  +      +               
Sbjct: 212 LSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTIMDVDFIHEVVVIDHQLLKSKEQGYY 271

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     +         +        F+N   +   A  ++
Sbjct: 272 IETPKTKSGTRQVPLSKETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAIDYN 331

Query: 271 IWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
           + F     K   +         + H +R    T  A       +L    G   +      
Sbjct: 332 MLFVRMVKKYNKHHKDSPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 391

Query: 322 YTKGA 326
           Y   +
Sbjct: 392 YAHAS 396


>gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi
           SZ]
          Length = 325

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 80/306 (26%), Gaps = 54/306 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
           L+ + R        +  +   +  +  + I        +++  K I          R+  
Sbjct: 10  LLDQLRDRIRLKHYSRRTEDVYLDWAKRYILYHNKRHPQEMGKKEIEGFLTYLATERQVA 69

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  Q   +++ L+K  +  +   ++     ++P          T++++    +   + 
Sbjct: 70  AATQNQAKAALQFLYKEVLEIQLPWLDEVEQAKKP---KRLPVVLTEKEVHSLLAHVPQA 126

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                   +     L      R      +     I+  K G      LP   +K L    
Sbjct: 127 YALLARLMYGTGMRLLEGLRLRVQDLDFERAELLIREGKGGKDRVTMLPQSLLKPLQEHL 186

Query: 250 IGKETFFINN---------------------------------------------DKQKM 264
              +     +                                              +  +
Sbjct: 187 KQVKQAHEQDLLKGYGEVWLSESVARKYPNAGREWVWQYVFPSARLSVDPRSGVTRRHHL 246

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           +        K  A  AG+ K  + H +R   AT    AG     +    G K V     Y
Sbjct: 247 DEKGLQRAIKQAAVDAGLTKNVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIY 306

Query: 323 TKGADR 328
           T   ++
Sbjct: 307 THVLNK 312


>gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC
 gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 332

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 76/300 (25%), Gaps = 36/300 (12%)

Query: 70  TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHI 119
           +L  L+  +   +       + ++  S+   F Q+++ +           ++ +I    I
Sbjct: 6   SLAPLLESFFLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLI 65

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + ++        +  S    LT++   F++A  +          V     K        
Sbjct: 66  VAFLDDLENRQGISVRSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLAIPSKRFTRTLVN 125

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT 226
                +              G +        + +GLR S+        L           
Sbjct: 126 FLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGAHLRVI 185

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKA- 280
            K               +L       +              +++              A 
Sbjct: 186 GKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSARGERLSVHGVQYMLNKHRQIAS 245

Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                  G   + H +R   A     AG     +    G ++V+  + Y +    ++   
Sbjct: 246 AMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIYLEATLAMKEAA 305


>gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
 gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13]
          Length = 406

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
 gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855]
          Length = 297

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 22/270 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
               +++ +  +    +       D++ +T   +R   +  K   ++     + +  +R 
Sbjct: 11  DKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLKEKGNAVNTIAKHMRQLRT 70

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           L   A+ Q Y+  N     +   ++ +G   +   D  +                 AF F
Sbjct: 71  LVNEAINQGYMHANAYPFRKYKIKQEKGRHEFLIPDELKKLETVEVEEESMRHVLDAFLF 130

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             Y+GLR SD C+   ++                  VE+      L     +G    + +
Sbjct: 131 CCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESRALGILDRYPD 190

Query: 259 NDKQKMNATQ--FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
           +            +   +  A   G+ K    H  R   AT+    G     +    G  
Sbjct: 191 SGSLAALPCNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHT 250

Query: 315 TVDQAETYT-----------KGADRIRLGI 333
           +V   + Y+           K A R R  +
Sbjct: 251 SVKTTQIYSEILSSTIVRDLKNAQRKRRKV 280


>gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 78/263 (29%), Gaps = 27/263 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSGVESRKHTPSSAIQ 135
             +  +  S+    +Q                  D  +     I      R     +  +
Sbjct: 16  RKSSKTIDSYIRDINQFNEYIKSKKKKINKINNSDIDEYKNYLIY----DRGLKIKTINR 71

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPR 193
            L S+   FK+      +        E+ + +       + +D+Q   +     +  + R
Sbjct: 72  KLVSINQFFKFNNIAVDI------RQEKVQMQNFLDDILSNKDVQALVNATYKKDDLRAR 125

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIG 251
                L Y+G+R S+  +  +   +    +I  K  K   +          +      I 
Sbjct: 126 TIIYTLYYTGMRVSEMLQLTIYDTKKQSITILGKGAKHREVFIPNKLKDIWEAYMNVRIR 185

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
           K T      +  +N        K  A  AGV+KS   AH  R       AD G     + 
Sbjct: 186 KGTALFTGKRGPINRKTVDSLIKEYAALAGVSKSKAHAHNFRHLYCKNLADKGIDISTIA 245

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G + ++    YT+      L
Sbjct: 246 DIAGHQNINTTRIYTRKTKEELL 268


>gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060]
 gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060]
          Length = 286

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 19/265 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           L     +         +++  +     +     G          +    +   + S   +
Sbjct: 9   LRRRMIEDMTIRRFGEHTKRDYIRQIREFTIFLGRAPDLAEPEDLRRYQL--HMASLGAS 66

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +     +T++R  F   + +          + R           + E++       +  
Sbjct: 67  YARMNLAITALRFFFHVTLGR----SGFADRLARIPTPERLPVVLSPEEVALLL-AHAPS 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
            + R A       GLR S+     V  + +    I+    K      V L    + LL  
Sbjct: 122 LKYRAALSVAYGCGLRVSEIANLKVTDIDSARMLIRVEQGKGRKDRFVMLSPDLLDLLRQ 181

Query: 248 TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
               K             Q +   Q +    A A  A ++K    H +R   AT   +  
Sbjct: 182 WWRVKRPRGWLFPGQQPAQPITTRQLNRACHAAAEAARIDKRVSMHTLRHSFATHLLERK 241

Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326
                +    G + +D    YT+ A
Sbjct: 242 TDIRVIQVLLGHRKLDTTAVYTRVA 266


>gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 90/322 (27%), Gaps = 39/322 (12%)

Query: 64  PRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKH 118
           P+    TL  L+  +         + +  + +++   +   +R      +     ++ +H
Sbjct: 2   PKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEH 61

Query: 119 I---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +         +   + R+ + ++    L ++R  F + V  E      C  V R   K  
Sbjct: 62  LTGADVLAFLQYIEKERRASVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKKA 121

Query: 170 GIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             R     +         Q       G +       L  +G R  ++     Q +     
Sbjct: 122 TRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKSP 181

Query: 223 SIK--TQKTGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           +      K        +           +        E  F+N  +  + A+ F    + 
Sbjct: 182 AHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLRQ 241

Query: 276 KATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-A 326
               A            + H  R  +A     AG     + +  G   +D    Y +   
Sbjct: 242 YVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANL 301

Query: 327 DRIRLGIKNSRRISSVVDSDDP 348
           +  R  ++       +  +  P
Sbjct: 302 ETKRKALEQVD--PKLRPAKPP 321


>gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 335

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 96/313 (30%), Gaps = 39/313 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSG--DFDYRKITTKHIRSGVE 124
           +      +  +      + ++  ++          ++ + G  + D  ++T   +R+   
Sbjct: 3   VSEAQQAFFAARRPRKDSPHTTAAYRRDLAGITALLLAELGRDEVDVEELTAPVLRAAFG 62

Query: 125 SRKHTP--SSAIQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIR 172
           +   +   SS ++  ++      + V                  P L+ +  + +    +
Sbjct: 63  AFADSHAKSSVLRAWSTWNQFLTFCVSDGLLAGNPMGAVARPKTPPLTPKPLRGEETPEQ 122

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
             T       ++      +  L     L +GLR ++      + +      ++    G  
Sbjct: 123 LLTAAADGARRARDPWPERDVLVLALGLVAGLRAAEMRALTPRSVVGRDGELRLHVHGKG 182

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDK------------QKMNATQFSIWFKAKA 277
               ++ +     KL+          F                   +         K+  
Sbjct: 183 SRDRSIPVQPALAKLIEDYQASCRRRFPRQRFPASEPLLRDRAGNPIGRGALEYLVKSCY 242

Query: 278 TKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AG++         H +R   AT  A+ GATA E+M+  G  ++  ++ Y +   R + 
Sbjct: 243 RWAGLHDRVPTGANLHALRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGREQR 302

Query: 332 GIKNSRRISSVVD 344
               S R    +D
Sbjct: 303 AAAASNRTYRALD 315


>gi|322433738|ref|YP_004215950.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321161465|gb|ADW67170.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 418

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 91/307 (29%), Gaps = 34/307 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
             ST  +  +        +L   +++Y +       A  +    +     + R   +   
Sbjct: 97  ASSTEVQAQLEVATSASISLDQAVADYLEEIR-RFRAPKTLAGCKHTLKLLQRGLPNKML 155

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           + IT K + + + S K    S       ++ +  +   Q  V +     +     + E  
Sbjct: 156 KDITRKELLNHMSSLKDQGLSNRTAHNHVKRILTFLRSQGVVGLLRATDI----PRYEER 211

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------- 224
                +  Q      +   + R+ FEF L +GLR  +      +++      +       
Sbjct: 212 DAQAYKPEQLALLLAAADPEERIVFEFFLGTGLREQEVMYTTWKNINFKDKVVDVRSKPE 271

Query: 225 --KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                K     +V +P+  +  L        +  +           F    +  A +AG+
Sbjct: 272 LGFHIKDKEERSVPVPEWLIAKLIERKKQSSSMLVFPSSIGKANGHFLRVLQKLAYRAGL 331

Query: 283 --------------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                                   H  RK  AT+ ++AG +   +    G  ++     Y
Sbjct: 332 NCGECVTKSEKSCANHPVCTEWGLHKFRKTFATLHSEAGVSVRTIQKWCGHSSLSCTLKY 391

Query: 323 TKGADRI 329
              AD  
Sbjct: 392 LAAADLR 398


>gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896]
          Length = 411

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/394 (9%), Positives = 100/394 (25%), Gaps = 74/394 (18%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R   G+  Y +   +G R  +               +       +   +      +L +
Sbjct: 18  YRESDGRYAYGYVDPYGNRKFIYSKDLKKLREREERLIKDQLDGLDVYVAGNA---SLNF 74

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKH 128
           +   Y  +     L   +  ++   ++  +R+  G     +I    +         +R+ 
Sbjct: 75  VFDRYISTK--SELRETTYTNYMYMYNHFVREGFGKKKIGEIKYSDVLYFYYDLLNNREL 132

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFK 183
             ++     T +   F+ AVR + +  N          ++  +K       T E  + F 
Sbjct: 133 QVNTLETIHTVLHPTFQLAVRDDIIRNNPSDGVMAEIKKKNTKKKNMRHALTIEQQRAFM 192

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
           ++ +           F  LL +G R  +        +     +I    + T         
Sbjct: 193 NYIASSPVFVHWNPIFTVLLGTGCRIGEVVGLRWSDIDMEKRTIDINHSMTYYPRKTDTY 252

Query: 233 ---------------ITVELPDGFMKLLAMTPIGKETFFIN--------------NDKQK 263
                            + +     + L      ++                        
Sbjct: 253 KCEFKVSLPKTEAGVRILPMMQPVYEALETEYERQKEEGFCTAVVDGMSGFVFSNRFGMI 312

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   +                         + S H +R    +   +       
Sbjct: 313 HNPAAINRVIRRILEAHNTEEIVKAKKEKREPIMIPHFSCHHLRHTFCSRFCENETNIKV 372

Query: 307 LMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRR 338
           +    G  +++     Y +  +D+ +  I+N  +
Sbjct: 373 IQEIMGHASIETTMDIYAEANSDKKKESIENLAK 406


>gi|78271306|emb|CAJ13674.1| integrase [Phage SK137]
          Length = 382

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 102/375 (27%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+    HG++  +     +T   A  +ALT    + + 
Sbjct: 5   KTKYP-NIYYYETSKGK-RYYIRRSFFFHGKKKEITKSGLTTLPQA-RAALTEIEQQIQD 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKPKFGSVLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNMLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E + P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEENMPKQFYALTYLTIFGLRRGEVFGLRPMDVTQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6]
 gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6]
          Length = 321

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 58/262 (22%), Gaps = 6/262 (2%)

Query: 72  KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
              +  +        ++A +++    +    + R+    D   +                
Sbjct: 50  ADAVVAFLNHLATELNVAASTQNQARAALLFLYRELLGRDLGDLAAITAAKQPRRLPTVL 109

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T +     +  +  ++    +  Y +    +   R + K    +                
Sbjct: 110 TRAEVRAVMAHLSGVYLLMAQLLYGSGLRLMECLRLRVKDLDFQMLQVVVRDGKGMRDRL 169

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +         L + L                   +                +  L    
Sbjct: 170 -TMLPATLVEPLRAHLVQVKQIFEQDLADGYGEVYLPFALVRKSPDAARSWAWQYLFPAE 228

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHE 306
              ++       +  ++              +G+ K A  H  R   AT   + G     
Sbjct: 229 QRSRDPRSGAIRRHHVHEGSLQRAVHDAVRASGITKHASCHTFRHSFATHLIENGYDIRT 288

Query: 307 LMATYGWKTVDQAETYTKGADR 328
           +    G   V     YT   +R
Sbjct: 289 VQELLGHSDVKTTMIYTHVLNR 310


>gi|308172432|ref|YP_003919137.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605296|emb|CBI41667.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 403

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 107/371 (28%), Gaps = 65/371 (17%)

Query: 21  IIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             +YF        R G  R+I+           A    L     K        K+    +
Sbjct: 16  YTWYFVMENGRDPRTGKRRQIKRRGFLSKASAEAAYLELKT---KLISGIDVGKENILFQ 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
            +   + K     ++ V++  + +S  + +    G    + IT    +  ++  +   ++
Sbjct: 73  EIKDLWYKEYK-HTVKVSTLRARKSEIESLEEYFGKMKIKDITRGVYQKFLDYLREENYS 131

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------ 183
            ++     T+  ++FK+A +++ ++ +P   V+  + K       ++E+ + F       
Sbjct: 132 FNTISGIHTTASMIFKYARQEDIISKSPTEFVKPQRPKLTVEDIESQEEAENFLEGEELV 191

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                +           F    ++G R  +      + L      +KT +    +     
Sbjct: 192 EFLDLTEKHGLFLDFEYFCMAAFTGTRSGERLAGKWRDLTLEGDDLKTFRVTKTLYCPSN 251

Query: 239 DGFMKLLAMT------------------------------------PIGKETFFINNDKQ 262
                 L                                           +  F   D  
Sbjct: 252 KASDYELLPPKTPAAVRDVPLSDFLASLLKRLKLKQAKIAYANGRTFSDDDFIFARPDGH 311

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
             N  +     +    +  +NK    H  R    +++A+A     E+    G +  D   
Sbjct: 312 PENIKKMDTRMRRILKRMDINKHITQHTFRHTFTSLAAEADVPLEEIQKILGHQNDDITK 371

Query: 320 ETYTKGADRIR 330
           + Y     + +
Sbjct: 372 KVYLHTTRKTK 382


>gi|229552312|ref|ZP_04441037.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314294|gb|EEN80267.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 389

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/383 (11%), Positives = 103/383 (26%), Gaps = 52/383 (13%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   +   GK  +          + G  + +                 L  +    E   
Sbjct: 4   IRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRDLEKAVQNGELTV 63

Query: 63  SPRKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +PR          +  E+ KS        +   + + +   I+   GD    KIT + ++
Sbjct: 64  APRPDKVARKFNDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQ 123

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + V    K +P +  ++   +  +  +A  ++Y+  NP   +  P+ + +        D 
Sbjct: 124 AAVNKWFKQSPVAFKRYFVHINRILTYAELRDYIPHNPARRIILPRVQDKIGSTNDFWDR 183

Query: 180 -----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------ 222
                              + F  L Y+GLR  ++     + +                 
Sbjct: 184 RQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGV 243

Query: 223 -----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269
                    +   +   V +    +  L    I +  +     +   +            
Sbjct: 244 HGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNR 303

Query: 270 ------SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
                  +W         +    S H  RK   +    AG     +    G        +
Sbjct: 304 FRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQ 363

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            Y +        ++ + +++  +
Sbjct: 364 IYARVHQEQE--VEAAEKLAKYL 384


>gi|134299045|ref|YP_001112541.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
 gi|134051745|gb|ABO49716.1| phage integrase family protein [Desulfotomaculum reducens MI-1]
          Length = 376

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 112/366 (30%), Gaps = 49/366 (13%)

Query: 14  ERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           ++  +G      Y  R  +G+++      +S    A   A        E           
Sbjct: 5   KKRPNGTWQATIYVGRDSNGKQLFKYVTCDS-LKEAKSKAREIEQEIEEGRFVHLDNTRV 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +   I ++ ++    +L+ ++R +++SY         G+   +++   HI+  +  +  T
Sbjct: 64  V-AWIEKWMET---KTLSPSTRATYKSYIKNHYTPYFGNLKLKQLNEIHIKRFMAEKSKT 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S A   +  M  + K ++       +P   ++ PK +    R    +   +       G
Sbjct: 120 VSQAS--VRRMTSVLKTSLADVMKQKSPAKDIKLPKEEKYTPRV-PNDKEMETIHNAVRG 176

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKTGTI 232
           ++         + GLR  +        +  N                     + +    +
Sbjct: 177 TRDEPIVLLAAWCGLRRGEIFALRWNDIDWNNGTLRVDEAKSINEDNLYEDKRPKSENGL 236

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQK----------------MNATQFSIWFKAK 276
             V +P+  M LL      K+      D++                 M    +S ++ A 
Sbjct: 237 REVIVPEYLMGLLEDMRKPKKRKRKKKDQEPTNIVEISNNSDHQIFNMRPDSYSSYWAAF 296

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-GADRIRLGI 333
                +     H +R + A+     G          G   +   +  Y   G DR     
Sbjct: 297 VRNKKLPEIRFHDLRHYHASWLYARGIPDQYAAQRLGH-DIRVLKTIYQHLGLDRQHEID 355

Query: 334 KNSRRI 339
            N R++
Sbjct: 356 NNIRQM 361


>gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 349

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 90/334 (26%), Gaps = 37/334 (11%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + + GK +   Y     GRRIR    +      A+ +     +  + ++     +   L 
Sbjct: 5   KQKSGKWLCELYPNGREGRRIR-RQFNTKGEAEAFEAFTKSESEDKPWLGKKEDRRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTKHIR------- 120
            +I  +        +A  SR++          D I  +    D+     + +R       
Sbjct: 63  EIIQLWHNLHGQALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDRRLRGEIDNGY 122

Query: 121 -SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
                     P +  +    +  +F    R  E+   NP   +   K   + +   T   
Sbjct: 123 HKDPAKWIAKPITVNREQQYLEAVFNELRRLGEWSLPNPLDGIRVFKEAEKEMSWLTLSQ 182

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + +      +  +  L    +  L +G R  ++ R     L     +    K     TV 
Sbjct: 183 LAELFRACEQYGKENLTMIVKVCLATGARWGEAERLTRPQLSPYKLTFTKTKGKKNRTVP 242

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKF 292
           +P      L+                          FK       +  +     H +R  
Sbjct: 243 IPKWLYDELSERQGRMFKPCYQE-------------FKKMLKLTNIELTEGQKTHVLRHT 289

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                   G     L    G   + +   Y   A
Sbjct: 290 FGAHFMMNGGNILVLQKILGHANIRETMKYAHFA 323


>gi|301299373|ref|ZP_07205654.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853027|gb|EFK80630.1| site-specific recombinase, phage integrase family [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 305

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 24/288 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           R+K         ++      G+++  +   +     +  ++          +I  + I +
Sbjct: 2   RRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIIN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFK-WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                    ++          +   +              V+  K   +  +  ++ +++
Sbjct: 62  EFAETHEKATTMDFHHQLKSSILDAFDDGLIDRDPTRKTVVKGKKPGKKKQKYLSEFELK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITV 235
                   G++P L +  LL   +GLR  ++              I   KT         
Sbjct: 122 MLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGG 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-------------FSIWFKAKATKAGV 282
                    +    +  +     N   +                   +   K    +  +
Sbjct: 182 FKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFVKKRVFNSTVNNRLKQYCEELAI 241

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 242 PIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 429

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 91/292 (31%), Gaps = 30/292 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ R      G  D    ++T + IR+     K     
Sbjct: 139 METLAGIDYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGL 198

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 199 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQTLMKKKFT 257

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G I             
Sbjct: 258 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISN 317

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 318 IPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 377

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RISS 341
             T           ++    G  +    + Y +  +  ++  + N + R++ 
Sbjct: 378 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 429


>gi|258650892|ref|YP_003200048.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554117|gb|ACV77059.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 406

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 108/375 (28%), Gaps = 61/375 (16%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           HG++   +R      I   +    T              + +       +  T+   +  
Sbjct: 21  HGRVTVGYRDDGS--IDRRHVMAKTKGVVVQKVRDLERARDQGQVRRPGQRWTVAAWLDH 78

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
           + ++    +L   S  +++      +I + G     ++  +H+             P  A
Sbjct: 79  WLENIARPNLRATSYSAYQVAVRRHLIPEIGKHRLDRLEPEHLERLYRKIVADGGRPGRA 138

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            Q   ++R     A R+ +VA N       P+ + E I+P+T ++++   S         
Sbjct: 139 HQVHRTIRTALGEAHRRGHVARNVAALARPPRVQLEPIQPYTVDEVRAIMSTARAHPNG- 197

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------------- 239
             +   L  GLR  +        +  +   ++ + T    T                   
Sbjct: 198 ARWAIALALGLRQGEVLGLTWSDVDLDAGFLRIRTTRHRPTYAHGCGGTCGKSAGRCPQR 257

Query: 240 -------------------------------------GFMKLLAMTPIGKETFFINNDKQ 262
                                                 + +         +  F +    
Sbjct: 258 IQMNRAAGDTKSDAGRRVVGLPAALGELLREQRVEQERWQEAARQLWQNGDWVFTSRVGA 317

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +N +     +KA   +AGV +   H  R  +AT+    G     +M   GW +   A  
Sbjct: 318 PLNPSSDYHRWKALLKEAGVRDGRLHDARHTAATVLLVLGVPERTVMGIMGWSSTAMAAR 377

Query: 322 YTKGAD--RIRLGIK 334
           Y    D  R ++  +
Sbjct: 378 YQHVTDPIRRQVADQ 392


>gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
 gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665]
          Length = 346

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 91/322 (28%), Gaps = 57/322 (17%)

Query: 73  WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-------------GDFD-------- 110
             +  + +      + +  +  ++ +    +I                 D          
Sbjct: 22  AWLEAFEEHLRHERNRSPQTVRAYLADLRALIDHVVGTAGTSGTPAADDDAPVRHAPSAP 81

Query: 111 --YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
               ++  + +R  + +        ++  + + ++R    W  R+   + +P L +  P+
Sbjct: 82  DVLAELDIEDLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRSDDPALRLRSPR 141

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA----------------FEFLLYSGLRCSDS 209
            +        ++  ++  +   E      A                 E L  +G R ++ 
Sbjct: 142 PEGTLPHVLQEQQARRLLAAAQELVDAAAAGDDPVAHALALRDAALLELLYATGARVAEL 201

Query: 210 CRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---- 264
               V  L+     ++ T K     TV   D   + L              D        
Sbjct: 202 SALDVDDLEAGRGVVRLTGKGDRQRTVPYGDPAGRALQAWQRLGRPRLARPDSGPALFLG 261

Query: 265 ------NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                    Q            G    +  H +R  +AT   D GA    +    G  ++
Sbjct: 262 ARGGRLGVRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGHASL 321

Query: 317 DQAETYTKGA-DRIRLGIKNSR 337
              + YT  + DR+R G + + 
Sbjct: 322 RTTQVYTHVSIDRLREGYRQAH 343


>gi|88706780|ref|ZP_01104481.1| prophage integrase [Congregibacter litoralis KT71]
 gi|88698961|gb|EAQ96079.1| prophage integrase [Congregibacter litoralis KT71]
          Length = 399

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 77/302 (25%), Gaps = 33/302 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
                  + I     K  T K    ++ +         +   + E      +I   G   
Sbjct: 67  ARFADHDKQIEQRSAKTPTFKAFADQWMEENRI-GWKPSYINTLEHSLSKHVIPAFGSVP 125

Query: 111 YRKITTKHIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              I+ + I +        P                +  +R + + A  +     NP   
Sbjct: 126 MSAISKEDILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQIMREASERFG-FDNPYQG 184

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  K     + P+T ++++       E            ++G+R  +      +++   
Sbjct: 185 IKLLKVPRTKVEPFTLDEVKAVLDGVREDFHAY--MTVRFFTGMRTGEIHGLKWKYIDFK 242

Query: 221 IFSIKTQKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
              I  +++             +   + + D     L           +           
Sbjct: 243 QRMILVRESYVAGAMTDTKTEESARDIPMSDEVYAALKAQHKRTGKLDLVFCTGSGEPLS 302

Query: 269 FSIWFKA----KATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +   K           + K   +  R  +AT+   AG     +    G        + Y
Sbjct: 303 INNVCKRVWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQILGHSDSAITHKRY 362

Query: 323 TK 324
            +
Sbjct: 363 AR 364


>gi|294506796|ref|YP_003570854.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
 gi|294343124|emb|CBH23902.1| Tyrosine recombinase xerD [Salinibacter ruber M8]
          Length = 315

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 32/297 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           L+    +Y +       +  +  ++    +   +     +  + T   +R      +E R
Sbjct: 23  LQAFQDDYLEDK-----SDETVGTYRRSLNSFEKWFVQQNTFRFTEDGVREYKRYLMEDR 77

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             +  S   +LT++R   ++      +  NP   V+  +R     R    E   +     
Sbjct: 78  DLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAV 137

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    +       +LY+GL   +  RA V+ L++ +     +  G    V+  +  
Sbjct: 138 VDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQEAP 197

Query: 242 MK---------LLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVNK-- 284
           +           L           +       +                   +AG+ +  
Sbjct: 198 LDPPVLEAVEAYLDTRDDVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAGIKRKG 257

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            + H +   +A +  + G    E+       T+D    Y K    ++   ++   + 
Sbjct: 258 VTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIYYKKQGLLKRDPEDLEELD 314


>gi|255025297|ref|ZP_05297283.1| integrase (phage-related protein) [Listeria monocytogenes FSL
           J2-003]
          Length = 376

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 94/348 (27%), Gaps = 41/348 (11%)

Query: 21  IIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
             Y       G+          T   A ++A          ++      +       E+ 
Sbjct: 11  WKYRVSYKEAGKYKVKSKSGFPTKKQALLAASEMEDKLHRGVDI-NAGESNFVEAFKEWY 69

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFL 137
            +      ++ +   ++       +         +     +  +     T +  +  +  
Sbjct: 70  TTFRKQKKSIENDKHYDYAIKFCEKYFVGLKINDVNRTTYQKAINEFAKTHAKETTRKRH 129

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF- 196
             +R   +  V +  +  +P   V  P  +T         + Q  K      +    A  
Sbjct: 130 VYVRSFIREMVYEGVILRDPTARVIIPDDETTYKDLKALSEEQVKKLVKELNNHFNPAHS 189

Query: 197 -----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIITVE 236
                 F + SG R S+        +     +IK  KT                +   + 
Sbjct: 190 SISVILFAIASGARFSEIIGLTWDCIDFVQKTIKINKTWDYKDTNTFSNTKNYSSNRIIT 249

Query: 237 LPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + D  + +L                    +  FIN +    +    +   +   TK G+N
Sbjct: 250 IDDNTLSMLNKIKVYQSAEKLKDSSFNKNKLVFINTNNVPPSNNAINKSLRRYCTKLGIN 309

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              S HG+R   AT+          L    G  T+    ETY+   D 
Sbjct: 310 NAISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDE 357


>gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110]
 gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110]
          Length = 368

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 88/342 (25%), Gaps = 71/342 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH---- 128
           I +Y         + N+  ++            D     ++IT + +   +   ++    
Sbjct: 29  IQKYLHYLDSLERSPNTISAYAHNLKLYWEFLQDKHLNWKEITLETLSEFIHWLRNPNKN 88

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------- 170
                      +  +    LT++   +++  R            +    +          
Sbjct: 89  VISVQPQVSKRSEKTINHCLTTVCGFYEFYERLGEFEGIDADRYQVQPGRKYKSFLHHIS 148

Query: 171 ------------------IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                                 T E +           + +     L  SGLR  +    
Sbjct: 149 KGKEVKTRLLKVKEPKTFPGCLTPEQVNTLVEACC-NLRDKFLIRLLYESGLRIGEGLGL 207

Query: 213 GVQHL------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
             + +            + +  +    K G   TV +    M+  +   I +    I+ D
Sbjct: 208 RHEDMVTGNNNQIKVIPRVHNINYVRAKAGVERTVHVNKELMQWYSAYLIDEYPEDIDCD 267

Query: 261 K--------------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                            +N       F+  + K  +  + H +R   AT    AG     
Sbjct: 268 FVFIVIKAPGKGKIGNPLNYKTVDSLFRRLSKKTRIEVTPHLLRHTHATELIRAGWDMSY 327

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +    G   +     TY   +D   L     + +   + ++D
Sbjct: 328 VQKRLGHADIQTTVNTYIHLSDED-LSKTYQKYLKERLKNND 368


>gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4]
 gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4]
          Length = 338

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/322 (10%), Positives = 87/322 (27%), Gaps = 10/322 (3%)

Query: 15  RTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R+G    +  K  G ++R      +          ++    +  +I+  +    TL  
Sbjct: 3   VLRNGIWQIHLMKPDGSKLRQSSKTTDKVLAQKLHDKISTELWEGRWIDRNQSGNMTLDA 62

Query: 74  LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
              +          +  +   ++  +   +    G     +IT   +   +   +   +T
Sbjct: 63  AFDKVMAQRWEKQRSWFSVIHNYNRFKKYLK---GSTKLSEITRARLWEVIGEMREDEYT 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +  + K A     V +           +         E++   + F  +G
Sbjct: 120 DGTINRSMAVISTILKTARDDWEVIVKIPKVPLLKVGRGRMRWLKDDEELPFLEWFRKQG 179

Query: 190 SQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
               +   E LL +G R S+  R     +  N                +    +   + +
Sbjct: 180 DHDMVDLIEVLLETGCRVSEILRLKDTDVHINERRLYLGITKSGEEEYQPLSEYALQIFL 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                         +    ++F    +            H +R   A+    +G     +
Sbjct: 240 RRYKIGVPPFEGVSRWGALSRFQTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRV 299

Query: 308 MATYGWKTVDQAETYTKGADRI 329
                 K ++    Y K +   
Sbjct: 300 QEYMRHKDINTTLIYAKLSSEE 321


>gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 415

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 47/304 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPS 131
           L+ +  +       +  +  S+ S+ ++ +     G+FD ++++   I      +    S
Sbjct: 104 LLQKMVEVMRVQRKSYRTEQSYLSWVERYLDFHKEGEFDAQEVS-SFISHLAVQKCVAAS 162

Query: 132 SAIQFLTSMRVLFKWA---------------VRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +  Q   ++   F++                 +++   +     V+      EG+     
Sbjct: 163 TQNQAFNALVFFFRYVLEIELGDLSQSVRAVRKEKLPLVYTRDEVKAIMANMEGVPLLMA 222

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------- 221
             +       SE  + R+         L    +     + +                   
Sbjct: 223 RLIYGGGLRHSEAYRLRIKDLDRGRMCLTIRGAKGDKDREVPLGKSLLPAIDEQLERIRK 282

Query: 222 ------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                         +          V    G+  L     +  +       +  +++   
Sbjct: 283 LYDEDRTNDVAGCYLPHTLENKSPNVGKEWGWFWLFPADNLSLDPRANKIRRHHVSSNYL 342

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +  +K    KAG+ K  + H +R   AT   + G     L    G   V   + YT    
Sbjct: 343 NGPYKKALRKAGIVKAGTVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHVMG 402

Query: 328 RIRL 331
             +L
Sbjct: 403 VHKL 406


>gi|167758741|ref|ZP_02430868.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
 gi|167663481|gb|EDS07611.1| hypothetical protein CLOSCI_01083 [Clostridium scindens ATCC 35704]
          Length = 419

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 80/275 (29%), Gaps = 23/275 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNS---RISFESYFDQIIRKSGDFDYRKITTKHIRSGV---- 123
            K LI  YR+          +   +    + F   +++ G      IT   + S      
Sbjct: 118 FKELIDYYRQHERQRGKKDATINGQSHNAATFLHHLQEQGTSCLDNITEDAVLSFFISED 177

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                + S        ++   +W   Q    +    ++++ +R  + +       ++   
Sbjct: 178 GELIRSSSYKNNVAAVLKACLEWKGPQCRRLLGYLPALKKRRRNIQYLTKEEVSAVRTAI 237

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVEL 237
                  + R     L+ +G+R SD     +  +     ++   +  T       +T  +
Sbjct: 238 EQQPLSMRNRAVMLLLILTGIRSSDIACLTLDSIDWETATVCICQKKTGLPLELPLTPVI 297

Query: 238 PDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNKSA------H 287
            +     L       E+  +          +               AG+ +S       H
Sbjct: 298 GNAIFDYLTQERPDTESRRLFLSETWPFSPLADNSIENIVAKVFRMAGIRQSPGERKGTH 357

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             R  +A+   + G     +  T G  +    ETY
Sbjct: 358 IFRHNAASSMLENGVQQPVISKTLGHSSPQSLETY 392


>gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 397

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 95/365 (26%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKRDKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  +++   E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKLSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                 ++   +  S++  F  A++ + V          E  +  T+     T+E  Q  
Sbjct: 140 DKGFSYNTINNYKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++ +
Sbjct: 260 IETPKTKSGTRQVPLSKETIQAFQRVMKKRPKTDPFVIDGRGNFLFVNPKGKPKVAIDYS 319

Query: 268 QFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +    K  K  ++      + H +R    T  A       +L    G   +      
Sbjct: 320 TLFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4]
 gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 406

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 82/270 (30%), Gaps = 22/270 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
               +++ +  +    +       D++ +T   +R   +  +   ++     + +  +R 
Sbjct: 120 DKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRT 179

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           L   A+ Q Y+  +     +   ++ +G   +   D  +                 AF F
Sbjct: 180 LVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLIPDELKKLETVEVEEESMRHVLDAFLF 239

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             Y+GLR SD C+   ++                  VE+      L     +G    + +
Sbjct: 240 CCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESRALGSLDRYPD 299

Query: 259 NDKQKMNATQ--FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
                        +   +  A   G+ K    H  R   AT+    G     +    G  
Sbjct: 300 IGSLAALPCNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHT 359

Query: 315 TVDQAETYT-----------KGADRIRLGI 333
           +V   + Y+           K A R R  +
Sbjct: 360 SVKTTQIYSEILSSTIVRDLKNAQRKRRKV 389


>gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912]
 gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912]
          Length = 413

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 80/297 (26%), Gaps = 25/297 (8%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--D 108
           L G+  +R   N P + P      +  +         +   + +        +      +
Sbjct: 93  LHGTVVRRRPKNRPYEAPPAFGKALDAFTVECQRRGYSPYGQRTRMGRIRLFLAFLASEN 152

Query: 109 FDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPK 165
                +T +H+   V +   + P + +  LT++R   ++          ++  +   R  
Sbjct: 153 VTPDTLTARHVSRYVTTLMNYNPKTVLAILTNLRTFLRFLHDAGFHAQDLSGAVPRVRAG 212

Query: 166 RKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           R       W  + +Q+  +        G +           G+R  D     +  L    
Sbjct: 213 RYERLPSVWPADTVQRLLNAVDRGNPTGKRDYAILLLAARLGMRVGDIKALTLSALHWES 272

Query: 222 FSIKTQKTGTIITVELP------DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFS 270
            +I   +  T   +E P         +  L                    +   +     
Sbjct: 273 KTITWVQQKTGRAIEYPLLDDVGWAIIDYLKYGRPATTSPVLFVRHYAPFEPFGSHANLH 332

Query: 271 IWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   +AG+     +   H +R   A+   +       +    G  +    + Y
Sbjct: 333 HIITRYVRRAGISVPAGHHGMHALRHTLASTLLERETPLPVIAEILGHLSTQSTQVY 389


>gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 200

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 7/168 (4%)

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               + +E    R AF F LY GLR  +      +++      +K +++           
Sbjct: 34  MACHYDNENPTVRQAFIFCLYCGLRFCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGV 93

Query: 241 FMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
            + L   L        T                   K    +AG++K  S H  R   A 
Sbjct: 94  VIPLNDGLLSIIGEVPTDKNCLIFDLSTYESCCKSVKRWVKRAGIDKHISWHCARHSFAV 153

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              + GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 154 NILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 199


>gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
 gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM
           17565]
          Length = 337

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 59  ADFLEYYRKQLRKHDQK------WEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLLSAK 112

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   T +SA  + ++ R   K   R   +  N    +++ + +       + E++ 
Sbjct: 113 KLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVEELY 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    ++A  F   + LR SD      + + +     K     T         
Sbjct: 173 KLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAEDII 232

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +      K     AG+ K  + H  R+  AT+ A
Sbjct: 233 PISEEALGLIGYSSEKKGLVFKGLMRSWTQAPMKEWIRSAGITKNITFHSYRRTFATLQA 292

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 293 AAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 331


>gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
 gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704]
          Length = 412

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 109/377 (28%), Gaps = 65/377 (17%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPTTLKWLISEYRKS 81
           Y +R    R  R    +                 + E  +   + K  TL  L   +  +
Sbjct: 32  YMYRYKDERTGRRLAVYSPDLAELRKKEKEIEKDQSEGILTDTQCKNMTLNDLFEIHMDT 91

Query: 82  AHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
                LA +++ ++   ++ +   + G     ++   H+R         K++ S+     
Sbjct: 92  ---RKLAESTQANYRRMWNSLVRNELGQMKVVQVRPSHVRLFYSRLSKQKYSHSTIKFLH 148

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
             +   F+ AV  + +  NP         + E  R     D Q+    + + S+    + 
Sbjct: 149 NMILPSFEVAVDDDIIRKNPAKRTLGDYGEPEKKRTALSFDQQKNLLNYVKNSEVFHIYL 208

Query: 198 F----LLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTGTIITVELPDGFMK 243
                ++ +GLRC +      + +             I+          +T+   +  ++
Sbjct: 209 PLLQVMIGTGLRCGELIGLTWKDVDLKTRTVYVNHQLIYKNYGDGCDFHVTMPKTEAGIR 268

Query: 244 LLAMTPIG-------------------------KETFFINNDKQKMNATQFSIWFKAKAT 278
            + M+ +                              F++   + M  T  +   +    
Sbjct: 269 EIPMSKMVAKAFETQRRLNFQMGIPRDVKIEGLSNFVFMSRSGRPMMPTTVNFILRDIVK 328

Query: 279 KAG-----------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
                                + SAH +R  + T  A+       +    G   +     
Sbjct: 329 AYNEEENERAKRERRKPEELPHISAHILRHTACTRMAETDLDMKVVQYVMGHANISVTME 388

Query: 321 TYTKGADRIRLGIKNSR 337
            Y    DR R+  + ++
Sbjct: 389 VYNHITDRSRIEKEIAK 405


>gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 310

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 76/273 (27%), Gaps = 26/273 (9%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140
               ++  S++          G     Y  I    +              ++   ++  +
Sbjct: 20  KKRYSTAKSYQDALRSFKCFCGRKEIPYAYINRDTLLRYQSWLLAKGCARNTVSTYMRRI 79

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-----LA 195
           R ++  AV     A  P L            +     +  +           +       
Sbjct: 80  RHIYNLAVEVGEAAYIPHLFKNVFTGVESKRKKALPSESLRLLMTSPVTDPQQKRTQSAF 139

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------------- 242
               L+ G+   D      + ++  I S   QK+G++I VE+P                 
Sbjct: 140 CLMFLFCGMAFVDLAHLRKEDIKEGILSYYRQKSGSLIQVEIPAEAQGLLNELAADTTED 199

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
              L     G +T      +       F+   K  +   G+    +++ +R   AT   +
Sbjct: 200 SPYLFPFLEGMKTGEDAYKEYNTVLGGFNRRLKTLSESIGIRTRVTSYTIRHSFATTLKE 259

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                  +    G K++   + Y K     +L 
Sbjct: 260 QNVPIEMISELLGHKSIKTTQIYLKSFSLEKLS 292


>gi|124514904|gb|EAY56415.1| putative phage integrase [Leptospirillum rubarum]
          Length = 356

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 107/335 (31%), Gaps = 32/335 (9%)

Query: 14  ERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  + G   +  R +  G   +    +  +   A+         +  +++    + TTL+
Sbjct: 3   DIRKRGPYQWQVRIRRKGYPSQTKTFNAKSEAEAWAKVTEAEMERGIFVSRKEAENTTLE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRK-SGDFDYRKITTKHIRSGVESR--K 127
             ++ Y+K      ++ N + +++     +       G      I  K I    + R  K
Sbjct: 63  EALTRYQKE-----ISENKKGAYQESRRIENFKNHKIGKRFLATIQGKTIAEFRDERLSK 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV----AINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            + ++  + L  +  LF+ A ++  +         +++   +      R    E+    +
Sbjct: 118 VSEATVRRELVILSNLFEIARKEWGMGGIQNPVRSINLPSGRGNERERRLTEIEEKALLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                G +      F + + +R S+       ++      ++           +P   + 
Sbjct: 178 GCKEYGGEIHSIVVFAIETAMRRSEIVNMVWDNIDLKEMVVRRVGGKNNSFRTVPLSDLA 237

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------------VNKSAH 287
           +  +  + ++        +  + T   +  + +  KA                 V+ + H
Sbjct: 238 VGILKSMSRQLSGKIWAMEDQSITHAFVRVRDRLRKAYEKECEGKRTEPDPAYLVDLTFH 297

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R  + +  A      HEL    G K +     Y
Sbjct: 298 DLRHEATSRLAKI-YQVHELAKVTGHKDLRMLMRY 331


>gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        K     AG+ K    H +R   AT    AG     +    G   V   
Sbjct: 385 HHIHENGLQKSIKKATLAAGLTKRVNCHALRHSFATHLLAAGYDIRTVQELLGHADVSTT 444

Query: 320 ETYTKGADR 328
             YT   +R
Sbjct: 445 MIYTHVLNR 453


>gi|254496216|ref|ZP_05109111.1| putative integrase [Legionella drancourtii LLAP12]
 gi|254354608|gb|EET13248.1| putative integrase [Legionella drancourtii LLAP12]
          Length = 386

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/332 (10%), Positives = 89/332 (26%), Gaps = 31/332 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G++ +  ++  G RIR       +   A           R+      +   + K    
Sbjct: 11  KRGQVWHIEKQVLGHRIR-ESTGTKSLQEAEQYLARRCEEIRQATIYGVRPKRSFKEAAV 69

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSA 133
            +            S  +       I    GD    ++   T +      +  K    S 
Sbjct: 70  RFLNENQHK----ASIDTDAILLKSICPFIGDLTLEQVHIGTLQSFIKAKQEAKLKTKSI 125

Query: 134 IQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
              L  +R +        + +  +         +     +   P+     +Q +   +  
Sbjct: 126 NNTLELVRHILNVAATEWIDENSLTWLLVAPKIKLLPVKDARAPFPLSWSEQSRFLEALP 185

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQH-----------------LQNNIFSIKTQKTGTI 232
                   F + +G R  + C+   +                  +  +    +  K G  
Sbjct: 186 VHLNQMARFKVNTGCREQEVCQLRWEWEKRVPSLNTSVFIIPSHINRDGELRQLVKNGED 245

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
             V L D    ++         F  + + + +     +  ++    KA + +   H ++ 
Sbjct: 246 RLVILNDEAKAVIEEVRGIHSEFVFSYNGKPITRMN-NTAWRNARKKANLSDLRVHDLKH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
                   AG +  +     G ++      Y+
Sbjct: 305 TFGRRLRAAGVSYEDRQDLLGHRSGRITTHYS 336


>gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238]
 gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238]
          Length = 426

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 84/320 (26%), Gaps = 38/320 (11%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFD 110
            G  P  +            K +I  Y        LA  +     +   ++      +  
Sbjct: 93  EGRDPLGDRSELREAPR--FKDMIDRYLAEHVPH-LAPLNAGDQRAMLTKLVAPHWANKL 149

Query: 111 YRKITTKHIRSGVESR----------------------KHTPSSAIQFLTSMRVLFKWAV 148
              IT   + + +                         K TP  A +    +R +F  A+
Sbjct: 150 VADITPHDVATLLNIIAQGRARPSKEKPNNRARKLQGAKPTPIRANRVGEVLRKMFTLAI 209

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRC 206
              +   NP    ++ + +T   R  ++E++ +  +        R A      + +G R 
Sbjct: 210 SWGWRTDNPATGFKK-RVETARERFLSQEEIGRLAAVLDAAEDQRAAGIIRICMLTGSRV 268

Query: 207 SDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            +  +A  +                    I        +  +                  
Sbjct: 269 GEVRQARFEQFNLELCIWSKPAATTKQRKIHRIPISADVAAIVRQRSVSVPRDNPWLFPG 328

Query: 264 MNA----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                   +   ++     +A +     H +R   A++    GA+   +    G   +  
Sbjct: 329 DVPGQPVKEIRRFWINVQREANLPDVRIHDLRHTFASLLVSGGASLEMIGRLLGHTQMQT 388

Query: 319 AETYTKGADR-IRLGIKNSR 337
            + Y    D  +R G+    
Sbjct: 389 TQRYAHLMDSPLRAGVDAVA 408


>gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
 gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron
           Recombination
          Length = 320

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|328910529|gb|AEB62125.1| DNA integration/recombination/inversion protein [Bacillus
           amyloliquefaciens LL3]
          Length = 403

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/371 (11%), Positives = 107/371 (28%), Gaps = 65/371 (17%)

Query: 21  IIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             +YF        R G  R+I+           A    L         +    K+    +
Sbjct: 16  YTWYFVMENGRDPRTGKRRQIKRRGFLSKASAEAAYLELKTKLLSGIDVG---KENILFQ 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
            +   + K     ++ V++  + +S  + +    G    + IT    +  ++  +   ++
Sbjct: 73  EIKDLWYKEYK-HTVKVSTLRARKSEIESLEEYFGKMKIKDITRGVYQKFLDYLREENYS 131

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------ 183
            ++     T+  ++FK+A +++ ++ +P   V+  + K       ++E+ + F       
Sbjct: 132 FNTISGIHTTASMIFKYARQEDIISKSPTEFVKPQRPKLTVEDIESQEEAENFLEGEELV 191

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                +           F    ++G R  +      + L      +KT +    +     
Sbjct: 192 EFLDLTEKHGLFLDFEYFCMAAFTGTRSGERLAGKWRDLTLEGDDLKTFRVTKTLYCPSN 251

Query: 239 DGFMKLLAMT------------------------------------PIGKETFFINNDKQ 262
                 L                                           +  F   D  
Sbjct: 252 KASDYELLPPKTPAAVRDVPLSDFLASLLKRLKLKQAKIAYANGRTFSDDDFIFARPDGH 311

Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
             N  +     +    +  +NK    H  R    +++A+A     E+    G +  D   
Sbjct: 312 PENIKKMDTRMRRILKRMDINKHITQHTFRHTFTSLAAEADVPLEEIQKILGHQNDDITK 371

Query: 320 ETYTKGADRIR 330
           + Y     + +
Sbjct: 372 KVYLHTTRKTK 382


>gi|296536869|ref|ZP_06898916.1| integrase family protein [Roseomonas cervicalis ATCC 49957]
 gi|296262840|gb|EFH09418.1| integrase family protein [Roseomonas cervicalis ATCC 49957]
          Length = 388

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 97/342 (28%), Gaps = 34/342 (9%)

Query: 2   TPSLRLPPFVT--KERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            P+  +P  +   ++R   G    YYF +  G          +      ++       + 
Sbjct: 6   PPAEDVPAGLKPIRKRLADGSFRTYYFDRRTG---------TALGTDRAVAIERLRDMRE 56

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E +  P  +P + + L+S +R S  +      +R  +     +++R         IT   
Sbjct: 57  EALAPPAVEPGSFEALVSAFRASPEYLDKRATTRQQYAYEMTELLRDLHGSLLSDITPAV 116

Query: 119 IRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + +  +          A   +  +R+LF +A R+           +         R    
Sbjct: 117 VYAIRDRTAAAGHRHKANSLIRMLRILFGFAKRRGL---AATKPTDDVPLIAVEPRTAVW 173

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233
              Q            +     LLY+  R SD      ++L  N    +           
Sbjct: 174 TPQQIEAFLTGARPSLQAGMALLLYTVQRLSDVMALTRENLHENPADGRLWIGLRQRKTS 233

Query: 234 ---TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-------AGVN 283
                        +L   P  +     +          F+  + A   +        G+ 
Sbjct: 234 ALVWTPCHQRLAAILRALPPEQHHLVPSPTGLPWPKRNFARSWDAHLQRRNKQLAEQGLP 293

Query: 284 KSA----HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                    +R+      A AGAT +++ A  G       + 
Sbjct: 294 LIPALQRRDLRRTGMVQMALAGATPNQIAAVSGHSIDQTMKI 335


>gi|193215908|ref|YP_001997107.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
 gi|193089385|gb|ACF14660.1| integrase family protein [Chloroherpeton thalassium ATCC 35110]
          Length = 344

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 107/332 (32%), Gaps = 27/332 (8%)

Query: 15  RTRH---GKIIYYFR-KGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           RT++   GKI YY     +G+R                   +         E    P   
Sbjct: 6   RTKNLTSGKISYYLDVHANGKRFYEFLDIQADADDAEARAQAEDMMRKRLTELEEYPENF 65

Query: 68  PTTLKW---LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             T K     ++ + K A        +  ++ +    + + S    +  I  + +     
Sbjct: 66  AQTFKRRSNFVAYFEKHAQE---KPKTEKAWRNTLKYLKQFSSQISFAGIDEEWLEKFKA 122

Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               + +P++A  + + ++   + AV++  ++++P   V   K+        +++++ + 
Sbjct: 123 FLLERVSPNTAHTYFSKIKAALRKAVKEGILSLDPAAHVPNIKKNQPERVFLSEDELARL 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239
           +    +    RLAF F  ++GL          ++++ +       + G  I   +     
Sbjct: 183 QRTPCKNENVRLAFLFACFTGLNLQSLETLTWKNIKKSSHDYCFIELGQKIPSGIDSLPV 242

Query: 240 --GFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                ++L                        + T+      + A +A + K  S    R
Sbjct: 243 TLEAEQVLNQVSKANGIVEALSRSDEPIFLLPSRTEIQNCLNSWAKEASLEKRISFQVSR 302

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
              A  S       + L    G KT+   + Y
Sbjct: 303 HTYAIRSLSNEMDLYTLSKFLGHKTIGVTKIY 334


>gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12]
 gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
 gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12]
          Length = 380

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 24/306 (7%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIR 104
                +        + +   KK  TL   I +Y         +   S  +   +  +   
Sbjct: 67  KAQRIVELQNGIYGFNHQKEKKDITLIDYI-KYLADRDIEKTSRKVSMYTLIYHLQRY-D 124

Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV--------LFKWAVRQEYVAIN 156
           K G    R+I  K+I   +E  K       + +  +          +F + +    +   
Sbjct: 125 KLG-IKLRQIDKKYILGFIEYLKTATQKHCKSIKHINANTQVYYYKVFHYCLNSAIIDEI 183

Query: 157 PCLSVERPKRKTE-------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
              +     +K E            T ++++            + AF F  + GLR SD 
Sbjct: 184 IISNPMDKIKKEEKPKRKRTERAFLTIDEVKTLSQTDFHNKTLKRAFLFSCFCGLRHSDI 243

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                 +L+ N             T EL   P     L  +   GK        K  ++ 
Sbjct: 244 VALTWGNLKKNKIGKIELHMTQQKTQELLSLPLSNEALKQLPVRGKAQDTEKVFKGLISL 303

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + +      A KAG+  + + H  R   AT+    GA  + +    G   +   + Y K
Sbjct: 304 GRTNEILPRWAAKAGIQKHITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAK 363

Query: 325 GADRIR 330
             D  +
Sbjct: 364 IVDESK 369


>gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
 gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM
           15436]
          Length = 286

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 77/259 (29%), Gaps = 10/259 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + E++ +     L+ N+  +    F Q  R        + TTK +     + + +  +  
Sbjct: 25  VDEWQSALKAAQLSPNTIKTRVDRFRQFARWYEAGP-AECTTKTLMEYSAAHEWSCETRR 83

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               +++  F+W     Y  I+    + + K  +   RP     ++        G++   
Sbjct: 84  SVHATLQSFFRWFHGAGYADIDISAGLPKVKPSSPKPRPAPDSAVRSGLENG--GNREYF 141

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAMTPI 250
                 Y GLR  +  +   + +  +I     +  G      I         +++A    
Sbjct: 142 ILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGKGNKERIVPLPELLARQVIAECAR 201

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
                   N    M+A       K        + + H +R    T++ +       +   
Sbjct: 202 NAGYLLPGNIDGHMSARYAG---KLATRCLPGDITLHMLRHRFGTVAYNRSKDIAAVQDI 258

Query: 311 YGWKTVDQAETYTKGADRI 329
            G         Y    +  
Sbjct: 259 LGHTNPATTRRYIAVENSR 277


>gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
 gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185]
 gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483]
 gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492]
          Length = 354

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 94/293 (32%), Gaps = 26/293 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKH 118
            + +++E         L  +    +     +  +K             G   + +I    
Sbjct: 58  FESVVNERYDFFDKYKLKADFLEHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDL 117

Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                E            + T +SA  + ++ R   K   R   +  N    +++ + + 
Sbjct: 118 CNKFREYLLTAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETED 177

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 + +++ +      +    ++A  F   + LR SD      + + +     K   
Sbjct: 178 VVKEYLSVDELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVH 237

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             T          +   A+  IG  +       + +  +   I  K     AG+ K  + 
Sbjct: 238 IITQKNKAEDIIPISEEALGLIGYNSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITF 297

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H  R+  AT+ A AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 298 HSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 348


>gi|118463605|ref|YP_879542.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118164892|gb|ABK65789.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 399

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 100/400 (25%), Gaps = 73/400 (18%)

Query: 6   RLPPFVTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           ++P +V       G+  Y  R       G  ++ R  +         Y   + G   +  
Sbjct: 3   KIPDYVKALDLDSGR-RYEVRPEVTGPDGKRKQQRKRFKTLKEATDFYTR-IAGDRSRGV 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++        T++  +  +  +    + A      + +    ++   G    + +T   I
Sbjct: 61  HVAPSE---LTVEAAVDAWLAAQRVRTKA---MTGYVTALRPLVDHLGGKAVQAVTKADI 114

Query: 120 RSGVESR-----------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              V +                        K  PS    F+   R +F+  V+Q  +  N
Sbjct: 115 EKVVAALRGGTSKMGTWNAPEKIKGKQVRAKWGPSGTNHFIRRSRAVFEDLVQQGVLGRN 174

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           P   V+        +   T    ++  +          A   L   GLR  +        
Sbjct: 175 PAALVQPVPMARAELNTLTAAQAERLLAATRND--VFAAAWRLALMGLRRGEILGLSWDS 232

Query: 217 LQNNIFSIKTQKTGTIIT------------------------------VELPDGFMKLLA 246
           +  +   +  +     +                                +        L 
Sbjct: 233 VDLDAGLLTVRANRAPVPGGVEVGSPKTAAGLRTLPMPAELTVAMKQARKQQRERRLALG 292

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
              +      +  D    +    S  +        +     H  R   AT+    G    
Sbjct: 293 SKWVESGLVVVGEDGAPPHPDTLSHVWAETIAAHKLPAVRLHDARHTCATLMHQDGVPLA 352

Query: 306 ELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVD 344
            + A  G         TY   +D        ++R+ ++  
Sbjct: 353 VISAWLGHTNAAFTLATYGHSSDDSLAA--AAQRLDALTG 390


>gi|327390594|gb|EGE88934.1| phage integrase family protein [Streptococcus pneumoniae GA04375]
          Length = 388

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 126/386 (32%), Gaps = 64/386 (16%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y         +  G++++      +                 +   S 
Sbjct: 3   ITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQ--KEVKQKANQEKIAFQKAGST 60

Query: 65  RKKPTTLK---WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR 120
           R+K  T+K    L + + +S    ++  N++ + +    + I+   G +   K+TT  I+
Sbjct: 61  RQKAVTIKNYQELATLWLESYK-NTVKPNTQGNVKKLIDNHILPIFGAYKLDKLTTPLIQ 119

Query: 121 SGVESRK---HTPSSAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           S +       +    A      +     + + ++ V  + +  NP   V  P+   +  R
Sbjct: 120 SIINELADKTNRGEKAAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKR 179

Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNI 221
              K    Q    +       +  + R  +E  LY     +G R +++       +  + 
Sbjct: 180 KKVKHFENQELKKFLGYLDNLDTHRYRYYYETTLYKFLLATGYRINEALALSWSDIDLDN 239

Query: 222 FSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI----------- 257
             +   KT                  +++    + +L    + +                
Sbjct: 240 AVVHITKTLNRDIEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRERVVFS 299

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           +   +  ++++     +    +A V     HG R   A++  ++G    EL    G  T+
Sbjct: 300 DFIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTL 359

Query: 317 DQAE-TYTKGADRIRLGIKNSRRISS 341
                 Y+       L  +N+++  S
Sbjct: 360 SMTMDIYSH------LSKENAKKAVS 379


>gi|306823229|ref|ZP_07456605.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801603|ref|ZP_07695724.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553861|gb|EFM41772.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221735|gb|EFO78026.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 413

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 103/382 (26%), Gaps = 64/382 (16%)

Query: 17  RHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + GK ++ FRK  G+     + R+      T   A                 P  K   L
Sbjct: 15  KDGKGVWRFRKELGKDPATGKRRVIEAKGRTKAEARERFEAKVGELERTGLLPGGKSPYL 74

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
                 +        +   +  +            G    + IT +HIR  + +      
Sbjct: 75  VDYADRWLADYRTR-VKPTTYRTRAGRIKACTDVIGHVRLKDITPEHIRHCMRTLGERLA 133

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+      S++++   A  +E + I+PC  V+ P+ +    R   +E   +  +  ++ 
Sbjct: 134 SSTLKDHYVSLKMVLDQAELEELIPIDPCRRVKPPRVERAVPRILDEEQPGRLIAAVADT 193

Query: 190 SQPR--------------LAFEFLLYSGLRCSDSC------------------------- 210
              R              L FE    +G+R  +                           
Sbjct: 194 KTARRGPADMDDMTEMWMLLFELAFAAGMREGERYALMPYELERRHGVPGIHVQQQIQAY 253

Query: 211 ----------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                          HL   ++    +       V + +     L       +       
Sbjct: 254 GLPDKAVIPNWLDASHLYGILWLTTPKTRAANRFVPIGESLWARLWARIHRLDIAPHGLV 313

Query: 261 KQKMNATQFS-----IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                            ++     AG+ +   H  R ++AT++A +G       A  G  
Sbjct: 314 FTNQRGNPIRETTEAYHWRKALQAAGLPQVRIHSARHWTATMTAQSGMPDDARTAIMGHT 373

Query: 315 TVDQAETYTKGADRIRLGIKNS 336
           ++D    YT       L     
Sbjct: 374 SLDMTAHYTHW-QPKALAFDAV 394


>gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 74/285 (25%), Gaps = 33/285 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESR---KHTPSSAIQF 136
            LA + R       + +++            +  +    I      +     +P +    
Sbjct: 13  RLAPSGRRPLRCQLNTVLKLFNWKGEVEAQPFHTLNYAQIEYVKRHKLDEGKSPRTVNLV 72

Query: 137 LTSMRVL----FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-----DMQQFKSFWS 187
           + +++ +    F   +  +            P   +   +  +           +     
Sbjct: 73  VFALKAIVKTGFLMGMVDDIQWRQVQAVKRLPINPSSRGKALSSNSVGELITTCYLDKRH 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLL 245
            G +        L +GLR  +     V  +  +  ++  +  K         P   +  +
Sbjct: 133 IGKRDCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPFPTWALTYI 192

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSA 294
                                +    + ++        KA+  +A G+  S H +R+   
Sbjct: 193 DSWLRVRTYQPGDLFNPIWNNVIKHDRGLSCAALYQIVKARTLEATGITISPHDLRRTFI 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           T   +            G   V   + Y K  +   +  +   ++
Sbjct: 253 TELLNQKVDLSTASKLAGHANVTTTQIYDKRDES--VMREAINQL 295


>gi|25010286|ref|NP_734681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae NEM316]
 gi|76787040|ref|YP_328946.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae A909]
 gi|76798149|ref|ZP_00780402.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77405331|ref|ZP_00782426.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|23094638|emb|CAD45856.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562097|gb|ABA44681.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae A909]
 gi|76586508|gb|EAO63013.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77176009|gb|EAO78783.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 384

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 108/358 (30%), Gaps = 47/358 (13%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G +     Y  R G                  Y + L       +     +    
Sbjct: 9   KKAKNGYLYLVKVYMTRDGQRADHIKRGFRTRKEAKDYEARLIYLKASGKLEEFIKPTHK 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   +  ++ ++     +   +       F   I+   GD    KI+    ++ +  +  
Sbjct: 69  TYNEIFEKWYQAYQDT-VEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFIIEKAK 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK--SF 185
              +  Q  +    +F +A++ + +  NP   +  PKRK   I   WT +++Q+F     
Sbjct: 128 VFKNIKQIKSYTGKVFDFAIKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVL 187

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------KT 229
             E  +    F  L YSGLR  +        +     ++                     
Sbjct: 188 QEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKGTKND 247

Query: 230 GTIITVELPDGFMKLLAMTPIGKE--------------------TFFINNDKQKMNATQF 269
            ++  ++L    + +L       +                        +   + ++A   
Sbjct: 248 FSVRRIKLDSETISILQEWKANCQKEKAQLAVAPLSIEQDFIFTYCTRSGSIEPLHADYI 307

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +        K G+ K S HG R   AT+  + G          G  +     +TY+  
Sbjct: 308 NNVLSRIIRKHGLRKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHS 365


>gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
 gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum
           DSM 5476]
          Length = 348

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 45/303 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128
            +    ++ K      L   +   +     +     G     KIT +H++  + +     
Sbjct: 18  FEVFAKQWFKEYAEVKLRERTIARYRQLEARTYAALGHLHMDKITVRHVQKFIHNLGEEG 77

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                     P +   +L+ +  +F +A++ + V  NPC  V+ PK + + +  +T E+ 
Sbjct: 78  INQTTGGRLAPKTIHHYLSFVSTIFSYAIKMQMVKNNPCEHVQLPKAEQKELDCYTLEEA 137

Query: 180 QQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228
           Q+F +   +      AF    +Y G R  +      + +  +   I  ++          
Sbjct: 138 QEFLNLLQKEPLKYQAFFTLAIYGGFRKGELLGLEWKDIDFSTGVISIRRSSLYTKGKGT 197

Query: 229 ---------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                                +    +  +  F   + + M+  
Sbjct: 198 FTDTTKTKSSQRSLKIADEVLQVLKRYQSQQIFDRARVGDQWVDTDRLFTKWNGEPMHPN 257

Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKG 325
               W K    + G      H  R  +AT+  +    A  + A+ G   V      Y   
Sbjct: 258 SPYTWLKRFCERTGQRFLGVHQFRHLNATLLINNRVDAKTISASLGHTQVSTPLNIYAHT 317

Query: 326 ADR 328
              
Sbjct: 318 FQE 320


>gi|167623715|ref|YP_001674009.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
 gi|167353737|gb|ABZ76350.1| integrase family protein [Shewanella halifaxensis HAW-EB4]
          Length = 358

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 97/342 (28%), Gaps = 34/342 (9%)

Query: 22  IYYFR-KGHGRRIRLPYPHESTFIPAYM------SALTGSTPKREYINSPRKKPTT---- 70
            Y +R +G GRR  L      +   A                 +    S +    T    
Sbjct: 3   QYRYRFEGKGRRYDLGSYPNLSLSDARACVPELKGITESGMDVKSVKASQKVGKKTVLKP 62

Query: 71  -LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRK 127
            L+  +  +    +  SL  +++  +    ++ I  + +     IT K   +  +     
Sbjct: 63  KLEDCMDLFLD-KYVTSLRESTQRFYRYTLNKYIPNAFEQPVEDITRKEWYAYFDGVEES 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------KRKTEGIRPWTKEDMQQ 181
            TP  A   +  ++    +   ++ ++ +    +                     + + +
Sbjct: 122 STPHMANSLIKKLKTCLNFCKERDLISDHSLNEIRTKSVGSASNTGDRTPSVVEIKAILE 181

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDG 240
                            ++ +G RC +      + +  +       ++     T  L   
Sbjct: 182 EFGRSKSYPTTVNVVRMIVLTGARCGEVRCMQSKDINFDTGIWTVPKEKSKTNTRILRPL 241

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVN-KSAHGVRK 291
            +K L +     +TF   +D    +            +   +    +  +   S H  R+
Sbjct: 242 GLKALELVKWQVKTFGGFSDYVFPSASYKNEIGPATINKMCRTIVKRMDIERWSVHDFRR 301

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIR 330
             +T+  + G   H      G K       Y K     D+ +
Sbjct: 302 SLSTLLTEDGVPLHITEKMLGHKLGGILSVYNKSEYIEDQRK 343


>gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
 gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4]
          Length = 343

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 83/322 (25%), Gaps = 40/322 (12%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
              +RIR           AY   L     ++ ++         L  LI  +        L
Sbjct: 23  RDAKRIRKR-FATKGEAAAYEIYLLKQKDEKPWMAEKPDHRR-LSKLIEIWFAHYGAT-L 79

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----------------SGVESRKHTPS 131
           + N +  +  +   +    G+     + T  I                 +  +    + +
Sbjct: 80  S-NGQNIYSKFLK-MAEAMGN-PIASVFTSRIYSEFRSERMAGAINFVDARWQKGPPSIA 136

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSE 188
           +    L   + +F              L   +P +  E    + +++            +
Sbjct: 137 TLNSELARFKGMFSKLKEIGEWKGPNPLEEVKPFKDHERTMAFLQKEQLTLLLELVEKHQ 196

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +      +  L +G R +++ +     L     +    KT    +V + +     +   
Sbjct: 197 RTDMIKIVKLCLSTGARWNEAAQLKGSQLSKYKVTFTNTKTKKNRSVPISEELYNEIYKP 256

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATA 304
              K           +              K G+      ++H +R   A+     G   
Sbjct: 257 TSEKLFEECYTPFCYI-----------LKNKLGITLPSGQASHVLRHSFASHFMMNGGNI 305

Query: 305 HELMATYGWKTVDQAETYTKGA 326
             L    G   +     Y   A
Sbjct: 306 LVLRDILGHADISMTMRYAHFA 327


>gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 285

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 81/259 (31%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           ++ ++K     +LA N+  S+    +           +++  K++ +          P +
Sbjct: 20  VTTFQKHLAKTNLAPNTITSYVWTVNYFFEHY-----KEVNKKNLLAYKGFLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    +++ +++       +  +           +     +     + E    
Sbjct: 75  VNLRLQAINKFLEYSKQEKLKVKFVKVQQKNFLENVISDADYKFLKTKLKADGFDE---W 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+  +   +H+Q     + ++           +      K +    
Sbjct: 132 YFTIWFMAATGARVSELLQIKAEHVQVGYLDLYSKGGKIRRLYIPKNLRTEANKWIKERG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N    ++     +   K  A K G+N+     H  R   A    D       
Sbjct: 192 LSSGYIFLNRFGNRITTRGIAQQLKHFAEKYGINRDVVYPHSFRHRFAKNFLDRFNDLAL 251

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 252 LADLMGHESIETTRIYLRR 270


>gi|238921021|ref|YP_002934536.1| integrase [Edwardsiella ictaluri 93-146]
 gi|238870590|gb|ACR70301.1| integrase [Edwardsiella ictaluri 93-146]
          Length = 400

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 113/374 (30%), Gaps = 43/374 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGST--- 55
            +     +    +  G + + +    HGRR  L          +   A    +       
Sbjct: 18  KISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGISLAQAREKLMEAKKQVN 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                  ++      RK   T       Y K      LA ++R   +S  D+ I    G 
Sbjct: 78  AGMSPSAEKRDGKMKRKSERTFYDFTVSYMKH---TRLADSTRAMKQSIIDRDITPVWGR 134

Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT   +R   +   R+  P++AIQ    +  +FK+A       +NP   V     
Sbjct: 135 KLLSEITAPALREYCDRVKRRGAPATAIQVRNIVSAVFKFAALHGDYYLNPAEDVLPASI 194

Query: 167 KTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T   R                         +LA + +L + +R S+   A    +  + 
Sbjct: 195 ATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKSELLNASWSEIDFST 254

Query: 222 FSI----------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                        +          +     +K+ A +          +  + M+A   + 
Sbjct: 255 GVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCNQSSHKTMSAATLNR 314

Query: 272 WFKAKATKA---GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                  +A   G+     S H +R+ ++T+  +AG  +  +      +       Y K 
Sbjct: 315 VINLTVKQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCLAHEERSIRAVYNKA 374

Query: 326 --ADRIRLGIKNSR 337
             A++ R  ++   
Sbjct: 375 EYAEQRRDMLQQWA 388


>gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
 gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 90/306 (29%), Gaps = 38/306 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           + ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++       
Sbjct: 2   EKMLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPSE 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQ 181
                 S+  + L S+R  + WAV    +  NP   +   +      E I   T+E+ + 
Sbjct: 62  GKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWLTEEEFED 121

Query: 182 FKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 +               + R     L Y+GLR  +     +  L   +  I+   
Sbjct: 122 LLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVG 181

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----- 282
               + TV + +  +  L      +            +   F      K +  G+     
Sbjct: 182 KGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIE 241

Query: 283 -------NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
                    + H  R         A      ++    G   +     Y K +   +   +
Sbjct: 242 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAV 301

Query: 334 KNSRRI 339
           +   + 
Sbjct: 302 EALPKF 307


>gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7]
 gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7]
          Length = 371

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 96/336 (28%), Gaps = 36/336 (10%)

Query: 14  ERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++  +G+ +   R     G RIR     ++  +      + G   K E+   P++    L
Sbjct: 4   KKLDNGEWLVDCRPDGRDGPRIRRKVKSKNEAMHLERRIM-GDGSKGEFEKKPKRDERRL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             L+  +  + H  +L    +          + + GD      T +       +R     
Sbjct: 63  SELVGLWF-TMHGNTLKQGDKR--RREMLTTVARIGDPMVCTFTAEMFADYRAARIAGKW 119

Query: 127 ----------------KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTE 169
                                +    L  +R +F    R +++   NP   V   K+   
Sbjct: 120 GRLKTGSGKKKGQAAKPVGAKTLNHELVHLRAMFNELERLEKWTGENPLAKVRALKQDET 179

Query: 170 GIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +   ++E +    +      S   +     L +G R S++       +++        K
Sbjct: 180 EMGYLSREQIPLLLAKLDQHPSTVGMVARVCLATGARWSEAMNLTPLQVRDGRIHFVRTK 239

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           +     V +     K L      + ++             F +       +    +  H 
Sbjct: 240 SARNRAVPISAELQKSLEGALPWRSSYSA-------TYKAFELAVAELDLQLPKGQLTHV 292

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R   A+     G     L    G  T+     Y  
Sbjct: 293 LRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAH 328


>gi|307942321|ref|ZP_07657672.1| putative integrase family protein [Roseibium sp. TrichSKD4]
 gi|307774607|gb|EFO33817.1| putative integrase family protein [Roseibium sp. TrichSKD4]
          Length = 356

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 102/345 (29%), Gaps = 25/345 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLI 75
           R GK   Y+R      ++  +      +  ++++        E  + P+ K   TL  L 
Sbjct: 14  RRGKWYVYYRANRHALVQ-GFDGTREELDKHLASPAILKLYSEIADRPKNKGFGTLGGLF 72

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--PSS 132
             Y+    W  LA  ++  ++   D +  ++        I    I    +       P  
Sbjct: 73  EFYKTKERWKKLAPRTKADYQKVIDWLEERNRLKTPVIVIRPADIAMTRDKAAQDKFPKF 132

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           + + L  +   F   V   Y  +     +   +      +   +    +  +     +  
Sbjct: 133 SNETLALLSAAFSTGVEYGYAGLKTNSVLGIRRLHKNS-KAANRRWTIEEWNRVWSVTPD 191

Query: 193 RLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLL 245
            L     L  ++G R  D       HL+    +    +             +      LL
Sbjct: 192 HLKMVLGLARWTGARGQDIAVLRWDHLERQGETYTFLEYIAKKNQAECVVEIPASLNALL 251

Query: 246 AMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKA--------GVNKSAHGVRKFSATI 296
                   T   N+  +   +       ++     A        G + + HG+R   A+ 
Sbjct: 252 QSETRLTLTICKNSKGRPYPSENAMRKVWQEFKASAEFKEACPSGQDLTLHGLRVTYASE 311

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRR 338
             +   T  E+    G K+    + Y +GAD  +      +   R
Sbjct: 312 LREKDFTDEEIARAIGDKSTAMGKHYGRGADARKFARKVREAMDR 356


>gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)]
          Length = 290

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T+     +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETELQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQELLGHTDVKTTQIYTHVLDR 285


>gi|257451847|ref|ZP_05617146.1| hypothetical protein F3_02191 [Fusobacterium sp. 3_1_5R]
 gi|317058401|ref|ZP_07922886.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684077|gb|EFS20912.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 397

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 54/367 (14%)

Query: 13  KERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           + R R+G       +Y      R         +    A   A       R      ++K 
Sbjct: 9   RLRERNGVYHVVLYWYDETNKQRTHSFSTKIRTDEKKARKRAEEILLKARVEFLPQKEKE 68

Query: 69  TTLKW--LISEYR-----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHI 119
             ++    + EY      K      LA++S  + + ++ ++       +     +   H+
Sbjct: 69  QIVRSNLYVEEYFELMLHKYIVLRELAISSGTTVKGHYKRVYSFFHGKNIALKDLNKTHV 128

Query: 120 RSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +      RK  PS+        + +    + ++ ++      ++   +K +      
Sbjct: 129 EDFLFYLLSVRKLNPSTVNNSYAFFKAICNIGIEEDLISFKIFTGIKYTFKKKKKDYTTL 188

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +++  +      +  +  L     L+ G R  ++       +     +IK +++      
Sbjct: 189 EKNFIRDFLQCLKKEEYALELLLFLFYGCRTGETLGITFSSINFIENTIKIKRSLVWNRE 248

Query: 236 ELPDGFMKLLA-----------------------------------MTPIGKETFFINND 260
                  + L                                          +   + +D
Sbjct: 249 NGEYYVNEFLKTNSSRRILPLFEEMKGLFLERKERIEKNKKFFKKAYDNTWNDYICVRDD 308

Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + +       + ++   K    + + H +R   ATI  D G    +L    G  ++   
Sbjct: 309 GKMIKYYALRNFLESFCKKYNFPRLTPHSLRHTFATIMHDEGMDLKDLQMWLGHASIKMT 368

Query: 320 E-TYTKG 325
             TY   
Sbjct: 369 ADTYVHS 375


>gi|10954856|ref|NP_053276.1| hypothetical protein pTi-SAKURA_p038 [Agrobacterium tumefaciens]
 gi|6498209|dbj|BAA87661.1| tiorf36 [Agrobacterium tumefaciens]
          Length = 331

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 86/311 (27%), Gaps = 42/311 (13%)

Query: 70  TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHI 119
           +L  LI  +   +     +++ ++  S+   F   +R +                  + +
Sbjct: 4   SLPRLIERFFTQRLMRQRNVSTHTVASYRDTFKLFLRFAHRKTGKQPSSLMLEDFDAELV 63

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + ++     R+   ++    LT++R  F++   +E    +    V     K    R   
Sbjct: 64  IAFLDDLTAERRSGTATYNLRLTAIRAFFRFLAFEEPTVSHQIQRVLAIPGKIGTRREVQ 123

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                +              G +        + +G+R S+        +  +  +     
Sbjct: 124 FLVRDEIKALLAAPDRRLWIGRRDYCLLLTAIQTGMRLSELVGLDRGAVTLDTGAHIRCF 183

Query: 229 T--GTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAG 281
                     L      +L               F      +M+             +A 
Sbjct: 184 GKGRKERVTPLTKILSSVLKQWLDEPRLGQSDILFPTVHGSRMSPDAVQYLLAKHVKQAA 243

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                      S H +R  +A    DAG  +  +    G ++    + Y        L I
Sbjct: 244 QQYPSLRAKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQAYLH----AHLAI 299

Query: 334 K--NSRRISSV 342
           K     +++S+
Sbjct: 300 KGAALAKVASL 310


>gi|307296564|ref|ZP_07576385.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|306495991|gb|EFM65578.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0411]
 gi|315158701|gb|EFU02718.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0312]
          Length = 387

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/374 (11%), Positives = 98/374 (26%), Gaps = 59/374 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + +   G   + ++         G  +R                  L     + E   
Sbjct: 4   IQQYKKSDGTTAWLYKVYMGKDPVTGKEKRTTRRGFKTKKEAS---LDLARFQLEIESTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
             +    T   L   +    H  ++   +    +++F +QI+   G      IT    + 
Sbjct: 61  ISQHSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQK 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            +        S  +  +    +F + +    +  NP      PK          +   ++
Sbjct: 120 ILTEWSTKYQSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHNFNEIEEEFYTKE 179

Query: 182 FKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------- 221
               + +        +    F    Y+G R  +      + +  +               
Sbjct: 180 ELRQFFDCLQELKDDRALAFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSD 239

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                  T+   +  T+ + DG + +L           ++   +  N             
Sbjct: 240 GSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNMDDVPVISTIKAN 299

Query: 270 -----------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      +      A K    K    HG RK  AT+  +AGA   ++    G  + 
Sbjct: 300 KKRDFLYKGYPNHVMSKIARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSS 359

Query: 317 DQAE-TYTKGADRI 329
                 Y + +   
Sbjct: 360 KTTMDIYIQVSKNR 373


>gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973]
 gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 79/270 (29%), Gaps = 20/270 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLT 138
             +   +            D          ++    I       +      P++A + + 
Sbjct: 149 AATLQKYNVCKKHFSNFLRDKYGRSDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 208

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
           + + +     +   +  +P L++     +       T E++ +  +      +    R  
Sbjct: 209 TFKTITILGRKLGVLHHDPFLNIRF-HMEPVNRGFLTDEEILKIANKDFGIGRLELVRDV 267

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--E 253
           F F  ++GL   D      +++                +VE     + +          +
Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           T+        +   + + + K  A   G+ K  + H  R   AT+S   G     +    
Sbjct: 328 TYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKML 387

Query: 312 GWKTVDQAETYTKGADRI--RLGIKNSRRI 339
           G   +   + Y +  ++       + + ++
Sbjct: 388 GHTNIKTTQLYARITNKKIEHDMDELADKL 417


>gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 360

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 119/347 (34%), Gaps = 30/347 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKRE 59
            R  P++ ++  R  +       G   R+ L           Y  A     L        
Sbjct: 16  KRRKPWLLRDNKRFNE-----ETGKFERLVLGVFETKKEAETYRIAYFTNNLDMLEKTDI 70

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I+  ++K  T + + + + K+         +  ++E+ F +  +K    +  KI    +
Sbjct: 71  KIHKKKEKGITFEQVYNLWLKNKDVND---GTLTNYETQFKR-SKKLHKMEINKINGILL 126

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPW 174
           +    S   T S+     +   ++F +A+  +  + N    ++    +      +  R  
Sbjct: 127 QDIFYSLNLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGKKTSDRERVI 186

Query: 175 TKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           T+E++Q      S     +         L Y+GLR S+  R   + +  N +  + +K+ 
Sbjct: 187 TQEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSK 246

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KS 285
           +   V       K+L +      +      ++    + +   F   F+      G++  S
Sbjct: 247 SKAGVRKVPIADKILDLFRARYFSKDKYLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
            H  R   A++ +D  A    ++   G        + Y    +  RL
Sbjct: 307 LHDTRHTFASLLSDNVADKDAIIKIIGHSNYKTTSDVYIHK-EIKRL 352


>gi|170076497|ref|YP_001733136.1| phage integrase family protein [Synechococcus sp. PCC 7002]
 gi|169887359|gb|ACB01067.1| phage integrase family [Synechococcus sp. PCC 7002]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 34/294 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL  + +E+ +      LA ++  S+ +    ++   G +    +  K ++  ++  +H 
Sbjct: 3   TLATVATEFLERP---GLAPSTVRSYTTALLPLLANYGAWPITHLDRKTLQDYLQQLEHL 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VERPKRKTEGIRPWTKEDMQ 180
           + ++  +    ++ L  +AV Q+Y+  NP            +      + IR  T + +Q
Sbjct: 60  SYTTHRRHQAILQSLLNFAVEQQYLVTNPLARLPQRKPNPNKGEHHSDQTIRYLTPDQLQ 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
                 ++  +       L  +G R ++        +           K           
Sbjct: 120 VLYQATAQQPRLHCLVRLLHRTGARIAELLSLDYDQVDLQERRFQVVGKGNKQRWCFYSP 179

Query: 240 GFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATK----AGVNKS 285
              + L +                         +++       ++    +     G+   
Sbjct: 180 DVDESLGIYLKYYRHPEHPALFTAQQPLTKAVSRLSYRTAYSDWRTMTQREPQLQGL--R 237

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIR--LGIKNS 336
            H +R   AT     G      L A  G + +     Y K   +    +  +  
Sbjct: 238 FHDLRHTFATE--RVGLMGIETLRALMGHENIQTTLRYQKVTSQRAETIAKEAL 289


>gi|21282474|ref|NP_645562.1| hypothetical protein MW0745 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912580|ref|ZP_07130023.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21203911|dbj|BAB94610.1| int [Staphylococcus aureus subsp. aureus MW2]
 gi|300886826|gb|EFK82028.1| integrase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 371

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 92/354 (25%), Gaps = 38/354 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYIN 62
           +L L   + K+  R     YYFR  +  +                 A+        E   
Sbjct: 7   NLNLSHNIYKDTKRG---TYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDELEG 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +        L+ EY           + +       + ++      D  K+TT+ +   
Sbjct: 64  VGQLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSIDVFKMTTQDVMKF 123

Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +    ++     +    +  L   A++   +  N    V   + +++    +   + 
Sbjct: 124 QNKKLKEGYSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWTLEQ 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
                      Q +L F+ L YSG R  +      + +      I   KT          
Sbjct: 184 FNQFYGALVTQQQKLFFKLLFYSGARKGEIRALTWRDVNFEDEFIHINKTDYHGEVTAPK 243

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATK 279
                    +   + D     L                    +  + +    WF      
Sbjct: 244 TKSAIRDIYLPTHMMDDIKDYLIWYKENNIYKDDYVLFGTFFKTYSESTIDRWFTTALKV 303

Query: 280 AG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                           H +R   A++  + GA+   +    G    +  E Y +
Sbjct: 304 LDDQLPDGQTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSN--EVYNR 355


>gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 87/290 (30%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +       +      G     +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITXAPQVSLAVLEAYQRW 78

Query: 126 RKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EAETRRVLQSLDAGTPPGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS- 285
           G    V +    +  L                     ++     +        AG     
Sbjct: 199 GKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGXLFISHKGTGLAHGTLTAMAGRAIRE 258

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                     H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 329

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 91/308 (29%), Gaps = 37/308 (12%)

Query: 58  REYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KI 114
              ++S +  P TL+   + + +     G+ + ++  ++ ++  Q  +           +
Sbjct: 7   AAIVSSSQNIPLTLEEQWTTFLRVEVASGNASDDTLKTYIAHIKQFFKWCRHNRLDPLHL 66

Query: 115 TTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
               I++      E   + P++    LT++R  +  A+    ++ NP L ++ P  K + 
Sbjct: 67  NRLQIKNYRHYLVERMNYKPATIALKLTTVRRFYDCAISYGLISFNPALGIKPPVEKRDP 126

Query: 171 IRPWTKEDMQQ--------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                  +  +                 + R     ++  G R  +  R  +  +     
Sbjct: 127 AERINYLERAEVAQLLASLPTDDSVASLRERTLIGIMVLQGCRTVEMHRLKMHDIIRQGN 186

Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           ++  + +G                    +         L        +    N  + ++ 
Sbjct: 187 NVGLRVSGKRSIRVVPLTPDLALLLDKYLAARTAAGDRLNDNTPIFISLSNANYGEPLSR 246

Query: 267 TQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                  +                + H +R  + T++   GA   ++    G        
Sbjct: 247 RSIQRIVQKHLQAFKQTGTNARKLTTHSLRHTAGTLALRTGAELRQVQDMLGHADPRTTA 306

Query: 321 TYTKGADR 328
            Y   ADR
Sbjct: 307 LYAHIADR 314


>gi|319788899|ref|YP_004090214.1| integrase family protein [Ruminococcus albus 7]
 gi|315450766|gb|ADU24328.1| integrase family protein [Ruminococcus albus 7]
          Length = 268

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 76/264 (28%), Gaps = 16/264 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQ 135
           +       +L+ N+   +                  IT +++ +          P +   
Sbjct: 6   FEAFLKKTNLSANTIEVYLWTVKYFEEHY-----DGITKENLLAYKGYLMENFKPKTVNL 60

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + +M     +  ++        +  +           +        K    E       
Sbjct: 61  RIQAMNKYLVYLGKESLRIKAVKVQQKNFLENVISNADYKFLKKSLKKDGIME---WYFV 117

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGK 252
             +L  +G R S+  R  ++H++   F + ++              +  ++ L       
Sbjct: 118 VWYLCATGARVSELIRIKIEHVETGYFDLYSKGGKLRRLYIPKKLRNETLEWLKTQERTS 177

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F+N   +++ A   S   K  A K G++K     H  R   A    +       L  
Sbjct: 178 GYLFLNRFGERITARGISQQLKNYAEKYGLDKKVVYPHSFRHRYAKNFLEKYNDIALLAD 237

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G ++++    Y +     +  I
Sbjct: 238 LMGHESIETTRIYLRKTASEQQAI 261


>gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)]
          Length = 293

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|300812763|ref|ZP_07093164.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|313123732|ref|YP_004033991.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300496256|gb|EFK31377.1| site-specific recombinase, phage integrase family [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|312280295|gb|ADQ61014.1| Integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 87/289 (30%), Gaps = 26/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           RKK   L    +++ +    G++   +   +     +  +I       D  ++  + I +
Sbjct: 2   RKKQILLHDYFAQWIEVYKDGAVRERTLDKYWLSHRHLQEIAPNLKLVDITRLEYQQILN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKE 177
                    ++ + F   ++ +   A  + Y+  +P   +    + P  K        + 
Sbjct: 62  TFAQTHEK-ATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKSKYLNEFEL 120

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
            +       S           +  +GLR S++     + +     +I   KT        
Sbjct: 121 KLLLRHLDLSTFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTG 180

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    ++  V +       L               ++++  +  +   K    +  
Sbjct: 181 SFKQTKNASSVRKVPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNLLKKHCEELN 240

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +   S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 241 IPVISVHGLRHTHASLLLFAGVSIASVARRLGHADMTTTQQTYLHIIQE 289


>gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 399

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 94/292 (32%), Gaps = 22/292 (7%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
           RE                  +  S    S+A ++  ++ +   ++      F   +I   
Sbjct: 76  RENQQLHLNSDMFFDTYAELWLSSIE-SSVAYSTYKTYSTAVSKLSSYFSRFKLSEIKPS 134

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           HI+  + + + +  +   +L     +F+ AVR + ++ NPC  V++P+ +TE + P++ E
Sbjct: 135 HIQQYISNSELSAKTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQTEKVDPFSIE 194

Query: 178 DMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
           ++               + F    Y+G+R  ++       +      I  Q+T T     
Sbjct: 195 EVSMILDWMRQHHPHMTIIFALGFYTGMRVGEAIALKWSDIDFKHHKIIVQRTITKNRIK 254

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKAT 278
                     +++     + L                                +FK    
Sbjct: 255 ESTKTADYRVIDIIPMLDEYLHFQKQYTFMKSEWVTVTSYGEPFTKTQNITEDYFKPCLK 314

Query: 279 KAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
             G+     + +R   A +  DA    + +    G  ++      Y    +R
Sbjct: 315 ALGLRYRILNQMRHSFACMMLDAREEINWIKNMLGHSSLQMLFRKYGNRINR 366


>gi|283796749|ref|ZP_06345902.1| phage integrase [Clostridium sp. M62/1]
 gi|291075635|gb|EFE12999.1| phage integrase [Clostridium sp. M62/1]
          Length = 403

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/390 (11%), Positives = 90/390 (23%), Gaps = 71/390 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTP 56
           M    + P  + +  T   K + Y+R       G+R+ +              A      
Sbjct: 1   MAKGKKRPAELPEYGTVMMKGVQYYRTRITDADGKRVAIYGLTREELYDRVEDAQKKIAE 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
              +  +P     T++    ++      G++  N+   +    ++ I+   G     ++T
Sbjct: 61  VVFHRENP-----TVEEYCEKWLL-MRSGTVRTNTLEGYARMVNRYIVGPIGQMYMDEVT 114

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           T  +R  +       S     L  + + +F  A   + +  NP  ++     K    R  
Sbjct: 115 TDDLRLLMVPLSKGSSGMYGQLNMLIKNIFNSAEESKVIKENPSKTICARGGKPAKRREA 174

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             ++             P +     LY+GLR  +        +  +  +           
Sbjct: 175 LTDEQTAILLDSIRELPPYVFVMIGLYAGLRREEILGLKWDCVFLDEKTPYISIRRAWHV 234

Query: 235 VELPDGFMKLLA-----------------------------------------------M 247
                    LL                                                 
Sbjct: 235 EGGEPVVNTLLKTPAAKRDVPIPKCLVACLREEREKSESEYVISNSKGTVLTETQFVRVW 294

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFK-----------AKATKAGVNKSAHGVRKFSATI 296
             I   +         +N        K                     + H +R    T 
Sbjct: 295 KYITVRSTAERCYYTYVNGQSIKHRIKPRLGEHQPNNPKLVYTMDFKVTPHMLRHTYITN 354

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKG 325
               G     +    G +        Y K 
Sbjct: 355 LIYKGVDPKTVQYLAGHENSKTTMDIYAKV 384


>gi|94970788|ref|YP_592836.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
 gi|94552838|gb|ABF42762.1| phage integrase [Candidatus Koribacter versatilis Ellin345]
          Length = 379

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 96/330 (29%), Gaps = 27/330 (8%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             +  R                L      R        +   L      + K      ++
Sbjct: 40  GKQYRRKAGTRSWGEAENVKRELEAQLSGRVTETPAAPEQRLLPEATELFLKDKKVQGVS 99

Query: 89  VNSRISFESYFDQI---IRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
                 +    D++     ++G +  + IT + +    +  ES   + S+  +     R 
Sbjct: 100 KGVLGKYTRELDRLRTHCERAGVYTAQGITRELLTEFAATWESVYPSSSTRSKVRERCRA 159

Query: 143 LFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             ++    +++   P L     + P+        + +     +        + R+   F 
Sbjct: 160 FLRYCYECQWIPRIPALPKIQVDEPETMPLTDAEFKRLLDATYAEVSDTDQRARVHALFQ 219

Query: 200 L--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------ITVELPDGFMKLLAM 247
           L  +SGL   D+ R     + ++      +               I  ++ +  +K+L  
Sbjct: 220 LMRWSGLAIGDALRLERSRVIHDEGKGVHRVVTARQKTGTPVSVPIPPDVAEEVLKVLNG 279

Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
            P            +  +  +       F+    ++  N  +H +R   A      G   
Sbjct: 280 NPRYVFWSGKGEPESISKNWSKYYVRPCFEGAKIESNGNMMSHRLRDTFACDLLQKGVPL 339

Query: 305 HELMATYGWKTVDQAET-YTK--GADRIRL 331
            E+    G +++   E  Y K   A + RL
Sbjct: 340 EEVSKLLGHESIKTTERSYAKWIQARQDRL 369


>gi|75675825|ref|YP_318246.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74420695|gb|ABA04894.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 362

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 84/315 (26%), Gaps = 36/315 (11%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                +             +   KP T+   ++ Y +     + +   R    +    I+
Sbjct: 32  WRQAQTLARKRMADYARTEAGIAKPLTVADAMATYLEYLETKTKSG--REGRYAAEAFIL 89

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--------------------------SSAIQFL 137
              G  +  K+T + I     +    P                          S+A + L
Sbjct: 90  PVFGSVEVAKLTKEQIERWHAALAKNPARIRTKNGRRQRFKSTTHPENDRRRKSTANRIL 149

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           T+++     A R   V  +       P    +  R       +  +   +     +    
Sbjct: 150 TTLKAALNLAWRDGKVPTDAAWRRVTPFESVDSARVRYLSMTEIRRLLEACSPAFKHLVR 209

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKL---LAMTPIGK 252
             L +G R  +     V+    +     ++  K+G    V L          +A      
Sbjct: 210 VALETGCRYGELIALRVEDFDADAGTLHVRDSKSGKPRHVVLTQEGAAYVAEIAKGRSPA 269

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMAT 310
               +  + +       +   +     A ++   + H +R   A+ +   G +   +   
Sbjct: 270 AMLLVKENGEPWQRDHQADPLRNACKNAKIDPAINFHALRHSWASHAVMRGVSLQIVARQ 329

Query: 311 YGWKTVDQAE-TYTK 324
            G  T    E  Y  
Sbjct: 330 LGHTTTRVTEAHYAH 344


>gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917]
 gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917]
          Length = 323

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 87/311 (27%), Gaps = 53/311 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           LI  YR+       A  +  ++E +  + +R  G    R++ +  + + +         S
Sbjct: 10  LIQRYREELQARHYARRTVATYEQWLRRFLRFHGMRHPREMGSAEVNAFLTHLAVEGKVS 69

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  L  +  R+          V R + +       ++ +++  +        P
Sbjct: 70  ASTQNQALSALL-FLYRELLERDLELEGVVRARTRRRLPVVLSEAEVRAVRLH--LEGVP 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------------------- 218
            L    L  SGLR  ++ R  V+ L                                   
Sbjct: 127 ALVVGLLYGSGLRLMEALRLRVKDLDFERRELTVRDGKGGKDRMTLLPQSLVPELRQHLL 186

Query: 219 -------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                             +           +   G+  +       +++      +  ++
Sbjct: 187 VVRQLHRADLNAGWGKVLMPYALARKYPHADREWGWQWVFPQQRRWRDSVSGQQGRHHID 246

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +A V K  S H  R   AT   + G     +    G + V     YT
Sbjct: 247 PALVQKAVKQAVAEAAVTKAASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTMIYT 306

Query: 324 KGADRIRLGIK 334
              +R  LG+ 
Sbjct: 307 HVLNRGPLGVN 317


>gi|299139773|ref|ZP_07032945.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298598127|gb|EFI54293.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 366

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 97/339 (28%), Gaps = 31/339 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T         RK                   +         +  YI        T+   
Sbjct: 6   KTPSATWKAVIRKTGWP-TTAKTFRTKRDAEDWSRRTEDEMVRGAYIQRAGADRLTVADA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------- 126
           ++ Y           +S++S       + +  G +    +T +      + R        
Sbjct: 65  LTRYLAEITPSK-RPSSQVSDRQRSAILTKHLGKYSLAAVTPEVAAKFRDVRLAGEDRKD 123

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKED 178
                   +  +    L  +  LF  A+++  +    NP +++ RP       R  +  +
Sbjct: 124 DIGGPVPRSNDTVRLDLALLGHLFTIAIKEWGIGLPANPVMNIRRPTPAPGRNRRLSAGE 183

Query: 179 MQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234
             +             R      L +G+R S+        +  +   ++    K  T  T
Sbjct: 184 EAKLLKAVALHSNPMLRWIVSIALETGMRSSEITGLRRMQVDLDRRIVRLLETKNTTPRT 243

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGV-NKS 285
           V L    +++              +           K     F+  +     + G+ +  
Sbjct: 244 VPLSKDAVEIFREAITHPVRPIDTDLIFFGEPGRDGKRRPYNFNPVWLNIKREQGLADVR 303

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H +R  + +   +AG +  E+ A  G K++   + YT 
Sbjct: 304 FHDMRHEAVSRFVEAGFSDQEVSAISGHKSMQMLKRYTH 342


>gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13]
 gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13]
 gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653]
 gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13]
 gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 16/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGV 123
           +  ++  L ++Y           + + +  S+  +I        +     +    I   +
Sbjct: 37  EQYSVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTL 93

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R ++ ++  + + ++  L + A +   +   P    ++ +          +E      
Sbjct: 94  RERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEHEEEKRLFGA 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    RL   FL+ +G R  ++       +Q    +    K+    TV L     K
Sbjct: 154 IKSRCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARK 212

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISAD 299
              +     +  F   ++ +     F   +     + G+        H +R   A+    
Sbjct: 213 ASHIPHERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     +    G +T+     Y   A
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1]
 gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22]
 gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1]
 gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22]
 gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 89/297 (29%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
            TL  L+  +            A  +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRAPTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + +   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKAIS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -QRKKTDYLGRVKLLPEAVALIEKYRDDTRETLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +   +     ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKK--LFEDMDRFVE 400


>gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 344

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 16/255 (6%)

Query: 84  WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTP-----------S 131
           +  LA    I ++  +    R   G   + ++     R  +E     P           +
Sbjct: 92  FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 151

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA  + ++ R +   A R   +  NP   ++R +         ++E++ +      E   
Sbjct: 152 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 211

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            + AF F   +GLR SD  +   Q +Q            T +          +       
Sbjct: 212 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGR--MFVTTRMQKTKEIVHNPISDEAYGL 269

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                     +           +   T AG+ K  + H  R    ++  + G     + A
Sbjct: 270 LGERGEGLIFEDFKDKMLQGPLQRWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQA 329

Query: 310 TYGWKTVDQAETYTK 324
             G K +   + Y+K
Sbjct: 330 YLGHKNITTTQIYSK 344


>gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 393

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 117/387 (30%), Gaps = 59/387 (15%)

Query: 11  VTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + +   + GK  + F+       +G+ I        ++  A  +A    +  +   +  +
Sbjct: 9   IKEYALKSGKKRFMFQIYLGYNSNGKPIITRRRGFKSYAEA-EAAYNKMSQIKAD-DFVK 66

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +K   +  L   + K+        ++   F +Y   I    G+     I  K ++   + 
Sbjct: 67  QKQIKVNELFELWFKTYKETVKPQSASRVFVNYKHHINPYFGNNYMDSILVKDLQKWADK 126

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
                 +    ++ MR L+++ +R  Y++ N    +  PK+ T   R        + +  
Sbjct: 127 LATELVNYRPVISIMRSLYEYGMRLGYISDNSISRIIIPKKTTRKRRNVEDNVYSKEELD 186

Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223
                           F+ L  +G+R  ++       +                 + +  
Sbjct: 187 TFLDVAKQVNQCVYTYFKLLASTGMRKGEALALTWNDIDLVNNTISVNKTLTSVDHKLIL 246

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFK----- 274
              +   +  ++ L     ++L      ++      F   +    + +Q   W +     
Sbjct: 247 SSPKTKNSRRSIPLSANLKQVLLDHRKSEKIVSVKLFHRLNGNYWSLSQPGDWLRDVYAK 306

Query: 275 ------AKATKAGVN-----------KSAHGVRKFSATISADA-GATAHELMATYGWKTV 316
                   A K  ++            S HG R   AT+  +        +    G   +
Sbjct: 307 DHALNVKYAKKYKLDDSYVRAKDLRHISIHGFRHTFATLLIENTNVKPKTVQMLLGHANI 366

Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSV 342
               + YT   ++ +        IS +
Sbjct: 367 KMTLDIYTHINNKNK--EDAINSISQL 391


>gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606]
 gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606]
          Length = 437

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 144 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 203

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 204 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 262

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 263 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 322

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 323 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 382

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 383 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 414


>gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 258

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 68/231 (29%), Gaps = 14/231 (6%)

Query: 101 QIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-N 156
           Q+  + GD     +       +R        +  +    L  +R +F        +   N
Sbjct: 3   QLAARLGDPLATALDASSYASLRRKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGN 62

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P   V+  K +   +   T E + +         +     L     L +G R S++ +  
Sbjct: 63  PLAGVKLLKLQERELSWLTTEQIGELLDSIRSRCDNPHTELVTLLCLATGARWSEAEKLP 122

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
              LQ N+ +    K+G +  V +P       +        F           T F    
Sbjct: 123 AHRLQGNVVTYAGTKSGKVRHVPIPPELANRASAHWRMHGPFTSCI-------TSFRRAL 175

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +    +++H +R   A+     G     L    G  T+     Y  
Sbjct: 176 DRTTIQLPQGQASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 226


>gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 381

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 9/269 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y        L+  +         ++ R +       +    I   +      P S  
Sbjct: 23  LQRYEIWMKGRGLSARTITDSMLTLRRLERVT-RRPAHAVAALAISRFLADEALGPRSRY 81

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +   +   F+W   ++               ++      T +             + R+
Sbjct: 82  TYHVQLAGFFRWLANEDGAPNIMAQIPRPRLPRSVPRPITTGQLQA--LLAVRMHKRTRV 139

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIG 251
                 ++GLR  +  +   Q +  +  ++           I +                
Sbjct: 140 MILLAAFAGLRAHEIAKVRGQDVDPDARTLHVVGKGGHAATIPLHPVLVEAAETMPRHGW 199

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310
                     Q + +            +AG+   +AH +R +  T    +G         
Sbjct: 200 WFPANSRRPGQHVLSRGVVDAIGDAMRRAGIPGGTAHRLRHWYGTTLVASGTDLRTAQTL 259

Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                +     YT+  D  R  I+   R+
Sbjct: 260 LRHSNLASTAIYTEVYDDRR--IEAIDRL 286


>gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093]
 gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093]
          Length = 292

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 71/263 (26%), Gaps = 14/263 (5%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT 129
            +  +  S     L   S    E+      R         +        IR  V   + +
Sbjct: 4   YVRAFLLSRQADGLTTRSLEWHETSLKSFTRWLEACSHSAEPETWNPTLIREYVVYLQSS 63

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +    + S+    +W   +E+   N    V +PK      +P+T  ++++     
Sbjct: 64  GLSGWTVTNKVQSLLAFTRWLHEEEFTEKNVAERVRKPKPPQTQRQPFTDAELRRLLKAS 123

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGF---- 241
               +       LL + +R S+ C       L +        K      V          
Sbjct: 124 QSSIRDAAIVALLLDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQTGKLV 183

Query: 242 -MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD 299
              LL          F     ++          +    +A V+    H +R  +A     
Sbjct: 184 SKWLLKGRASEGPYVFHTERSERFTPRSLHKLIERIGNRAAVDDCYPHRLRHSAAITMLR 243

Query: 300 AGATAHELMATYGWKTVDQAETY 322
            G     L    G  +++    Y
Sbjct: 244 NGMDPLTLQRMLGHTSLNMTMRY 266


>gi|195952979|ref|YP_002121269.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932591|gb|ACG57291.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 292

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 97/290 (33%), Gaps = 28/290 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128
           +I  + K     + +  +R S+ ++                D   I +K++   V+    
Sbjct: 3   IIDAWIKHLE-RTRSAFTRNSYINHIKTFSHVVSKNLETEEDLSNIASKNVYQFVDYASL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPC----------LSVERPKRKTEGIRPWTKED 178
           +P + +   ++++   K+A R+  ++                    K++    +  ++++
Sbjct: 62  SPQTMLAIFSALKHYIKFAYRRNILSEENYNDILKAIEEVREDLNMKKQKYPPKALSEDE 121

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSG--------LRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +++      + ++    +   L SG        LR  +        L   + +  T++  
Sbjct: 122 LEKIFKAV-KDTRYYKIYNLFLNSGIRLIEFEKLRPDNFFLDKSNILWIRLDANMTKRNK 180

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
             IT  +     K + +     E         ++      ++    + +  ++ S H  R
Sbjct: 181 PRITPVISFSKDKTIEIGLQIYEWIENFEYNFRVKRGVLQVYTDRLSKRLNIDFSIHSFR 240

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339
               T   + G +A  +    G   +    +TY K   + R   +   ++
Sbjct: 241 HTYITNLVNYGFSAEIVKEFVGHSDIKTTIDTYYK-FSQKR-AQELVNKL 288


>gi|58337077|ref|YP_193662.1| integrase [Lactobacillus acidophilus NCFM]
 gi|58254394|gb|AAV42631.1| integrase [Lactobacillus acidophilus NCFM]
          Length = 356

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 109/349 (31%), Gaps = 48/349 (13%)

Query: 11  VTKERTRHGKIIY----YF--RKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63
           + +  T  GK  Y    Y    +  G  I++      +   A  + L       +     
Sbjct: 5   IKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIP 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
             K   T   L   + K     ++  ++  +   YF+  I+++ G     K+T    +  
Sbjct: 65  ESKGHITFNKLYEMWLKLYR-ETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKA 123

Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           V       P +  +F+     +  + +    +     ++   P +     +P+T    + 
Sbjct: 124 VNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNEPKPFTDFYSKD 183

Query: 182 FKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNI--------------- 221
             + +   ++      F+      YSG+R  ++       +                   
Sbjct: 184 ELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNN 243

Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---------- 269
             +    +   +  T+++    M+ L    + ++   +      +N              
Sbjct: 244 ELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYL 303

Query: 270 -----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
                  W  A   K  + +   HG R   A++  +AGA+ +E+ A  G
Sbjct: 304 SMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLG 352


>gi|323484526|ref|ZP_08089891.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323694853|ref|ZP_08109006.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323402104|gb|EGA94437.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14163]
 gi|323501079|gb|EGB16988.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 283

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 82/275 (29%), Gaps = 16/275 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA- 133
           ++ Y         +  +   +     + +  +       IT + + +  E  K   ++A 
Sbjct: 14  LTTYYHYLIGEEKSPTTITKYLRDLQKFLTYTAGRP---ITKELVITYKEELKQQYATAS 70

Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L S+   F +A   E               +    +  +KE+  +      E  + 
Sbjct: 71  INSMLASLNHYFDFAGLYECKVKQIKQQRRVYCPEE---KELSKEEYYRLIKAAQELQKD 127

Query: 193 RL--AFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           RL    + +  +G+R S+                + K +     I  +L    +  +   
Sbjct: 128 RLSLIIQTICSTGIRISELECITVRAAQSGVAEVNCKGKSRQIFIPHKLKMMLLTYIKKQ 187

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
            I +   FI      +N +      K     A V ++    H +R   A           
Sbjct: 188 HIRQGPIFITKQGNPINRSNVWREMKNLCEIAHVRENKVFPHNLRHLFAKTYYKMEKDIS 247

Query: 306 ELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339
           +L    G  +++    Y   + +  R  I   + +
Sbjct: 248 KLADLLGHSSINTTRIYIISSGEEHRRQIDRMKLL 282


>gi|293400047|ref|ZP_06644193.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306447|gb|EFE47690.1| putative tyrosine recombinase XerC [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 341

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 8/279 (2%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TLK L   + +   +  L  + + S +S +     K     YR+I   H++  ++ 
Sbjct: 65  AHKMTLKDLYELWLE-KKYPKLGKSLQGSLKSAYKH-CYKIHLMRYREIKAIHMQDCIDK 122

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+          L K+A+  + +  +    +             + E +      
Sbjct: 123 CGKGYSTQWAIKNLFGHLDKFALELDVINKSYAQLINADPIPETTKGRLSNEQINTIWKI 182

Query: 186 WSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGF 241
           +  G  P   +    +Y+G R S+     V ++  +  +I             + +    
Sbjct: 183 YESGEYPWADSILVFIYTGFRISELLSIEVANVDLDNRTITGGMKSEAGKNRIIPIHPLI 242

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
             ++         +  + + +  + TQ+  ++     + G +++ H  R    ++  DAG
Sbjct: 243 YDIIVKRMNEGNKYLFSLNGKHCSKTQYYEFWYEIIDQLGEHRTPHECRHTFRSLLDDAG 302

Query: 302 ATAHELMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRR 338
           A    +    G K+ D  E  YT    + +R  I+  +R
Sbjct: 303 ANKKCIDMMMGHKSNDVGERRYTHKSIESLREAIELIKR 341


>gi|283455539|ref|YP_003360103.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
 gi|283102173|gb|ADB09279.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium
           Bd1]
          Length = 367

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 109/368 (29%), Gaps = 51/368 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
              R   G   +L      +   A +         +       +  TTL  L   +  + 
Sbjct: 4   CRMRMNDGSFRQLERS-APSKERARILLEEYCQQLKRRTFGAIEPNTTLGDLAGLWLATQ 62

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSM 140
                A N+  ++ + + + + +       + T   +++ ++       SA        +
Sbjct: 63  --TGKAENTINAYTNAYRKYVSRLDSLTIAEATPLVLQTFLDGVAGGSGSATVSMVKLVL 120

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLA 195
             + + AV Q  +  NP   ++R  R  EG      + +Q+F        W         
Sbjct: 121 SGMMEMAVAQGAILHNPVRDLKRMSRHREGSVAIPADKVQKFLKAVETNEWLVSHDEADI 180

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQN------------------NIFSIKTQKTGTIITVEL 237
              +LY+GLR  ++C      +                           +   +  T+  
Sbjct: 181 IRLMLYTGLRVGEACGLCWDCVDFTAGTLSVERIAIRCKGEGMTLQAHPKTEHSRRTITA 240

Query: 238 PDGFMKLL---------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           P   M +L                     +     + +    +    +   + +    G 
Sbjct: 241 PKSIMHMLELRRISLDTGGIPNPHNLVFPRPLSGGSCEYLVRSPNVVASDLRREREALGF 300

Query: 283 NK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
            K    S H +RK  A++  DAG    ++    G       E  Y     R R   K + 
Sbjct: 301 GKGESLSPHSLRKTCASLLHDAGLNTLDVADYLGHSDTATTENVYIA---RGRNSGKAAN 357

Query: 338 RISSVVDS 345
            + +++++
Sbjct: 358 ALETMIEN 365


>gi|229549036|ref|ZP_04437761.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|229305829|gb|EEN71825.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200]
 gi|315148862|gb|EFT92878.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4244]
          Length = 393

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 110/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +  + 
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEYF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----- 222
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINN 259
                          +   +I  +   +    +L    + +               F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|194462977|ref|NP_777346.2| hypothetical protein IN93_gp29 [Thermus phage IN93]
 gi|194077333|dbj|BAC55308.2| unnamed protein product [Thermus phage IN93]
          Length = 349

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 88/313 (28%), Gaps = 29/313 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS 106
              L    PK      P      L   ++ + +       L   +  ++  Y   +    
Sbjct: 2   AEKLARLLPKAGVGWVPDPSGLRLGDYLASWIEHRAATRDLRPTTLRNYHVYLKHVEP-I 60

Query: 107 GDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                 ++T    R+        +PS        +R   + A+R + +  NP  +V+ P+
Sbjct: 61  AHLPLSRLTPLTFRAFFAELAGFSPSHRRHIYQFLRAALRDAMRADLLDQNPMDAVDPPR 120

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                     K +        S+G +    F  +L + LR  ++     +  + ++  ++
Sbjct: 121 GGAVRPAKAWKPEEVARFLEASKGHRLYPLFALMLATRLRPGEALALRWEDWEGDVLHVR 180

Query: 226 TQKTGTII------------------------TVELPDGFMKLLAMTPIGKETFFINNDK 261
                                                    K            F ++  
Sbjct: 181 HTLRRDGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKG 240

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319
             +    F   F A   KAGV++ + HG+R    +++  AG     + A           
Sbjct: 241 TPLEYNNFKRAFYALQEKAGVSRITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTV 300

Query: 320 ETYTKGADRIRLG 332
           + Y +  +     
Sbjct: 301 KVYQQLMEEDHRA 313


>gi|330432599|gb|AEC17658.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis
           UMN179]
          Length = 339

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 99/332 (29%), Gaps = 32/332 (9%)

Query: 5   LRLPPFVTKER---TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           +R  P++ ++    T  GK IY           + Y        A  +    +   +   
Sbjct: 16  VRRRPYIARKTVGYTDSGKQIYSV---------IGYYETKE--EALTALANHNQQDKPEP 64

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           +       TL  +   +    H   ++ ++  S+ + ++ +          KI  +H+++
Sbjct: 65  S------ITLAKVYQLWYP-IHARQVSKSTAESYRNSYNHLSAII-SMPIHKIKYRHLQN 116

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +++ K      +S  +  + +  LF  A+  E+   +    ++  K             
Sbjct: 117 ALDAMKEKGLSYASLKKVRSLINQLFAHAIINEWTDKSYGQYLQMGKNTPVHPHKIFTRQ 176

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                                LYSG+R  +  +    ++           + T   + + 
Sbjct: 177 QINKLWQCQTTDTDLALIL--LYSGMRVGELLQLQRSNINLKQKYFDITTSKTKAGIRII 234

Query: 239 DGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
               ++L +     +            Q +   + +  F           + H  R   A
Sbjct: 235 PIHPRILPIVERRLQKKQKYLFVDETGQPLTYAKAATQFDKAMKAIKAKHTTHDCRHTVA 294

Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           T+   AGA         G  + +  +  YT  
Sbjct: 295 TLLDAAGANKVARDRLLGHASSNVGDSVYTHK 326


>gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379]
 gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379]
          Length = 468

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/326 (8%), Positives = 82/326 (25%), Gaps = 47/326 (14%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
             +      +   E     + K      L++           +  +  ++ ++  Q  R 
Sbjct: 127 ERLIVRRSPSQYTEAGYQEKSKSPEWDALLATMAAEIKVRHYSRKTLKTYANWSRQFQRF 186

Query: 106 SGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQ----------- 150
             D   +++ T  ++  +       K   S+  Q   ++  L++  +++           
Sbjct: 187 LKDKSPQELATADVKEYMTYLAVQCKVAASTQNQAFNALLFLYRHGLKREFGELRDVPRA 246

Query: 151 -------------------------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                                      + +         + +   +R           + 
Sbjct: 247 KKSLYIPVVLSRPEIDAILAQLSYPFNLVVKLLFGCGLRQFECLQLRVRDFNFDAGILTI 306

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +G + R             +     G  H ++             +  + P    + +
Sbjct: 307 HGKGKKDRTVPLPESLVPELRAQIKVVGELHDRDLSAGYDGVFLDDAVEKKYPKAPKEFV 366

Query: 246 AMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
                 ++            +  ++ ++          +A + K  ++H  R   AT   
Sbjct: 367 HQWFFPQKNLTLVAETGQRRRWHLHESELQEALYPAVRRAKIPKRVTSHTFRHSFATHLL 426

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
            AG     +    G  ++     YT 
Sbjct: 427 QAGYDIRVIQTLLGHSSLKTTMIYTH 452


>gi|261492582|ref|ZP_05989135.1| integrase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311741|gb|EEY12891.1| integrase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 332

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 99/318 (31%), Gaps = 21/318 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++G   Y  +       +       T    +  AL       EY  +P         LI 
Sbjct: 6   KNGNK-YRAQVRKKGIYKTATFSTKTEANRWAYALEAQIDAGEYNTTP---NILFAELID 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           +Y K           R              G+     +T +H+R     R  +  P S  
Sbjct: 62  KYLKEVTPTKRGK--REERYRLLRIAGSSLGNIPLPALTKEHLRQWQNQRLQEVKPVSVS 119

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           +   ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++ +             
Sbjct: 120 RERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIDKLIFVSGYSPSQPP 179

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +   A  F + + +R  +      +H+     +    +T    +  +P     + 
Sbjct: 180 LLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIA 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
            +  + +      N   ++ +      F+    KA +   +   H  R+ + T       
Sbjct: 240 ILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRL-SKYL 298

Query: 303 TAHELMATYGWKTVDQAE 320
           T  EL    G + +   +
Sbjct: 299 TVMELAKVSGHRDLSILQ 316


>gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 392

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 74/265 (27%), Gaps = 16/265 (6%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           +      +L +++  +  S    + +      +  +T   +                   
Sbjct: 115 KNEIDHSNLRLSTLKNHLSTLQVLCQYQPQVSFDDLTFNFLCDFEHFLLEQKYHRNTIAK 174

Query: 139 SMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            M+ L ++      +  +          + K         T E++ + +    +  +   
Sbjct: 175 HMKHLKRYVNLAINKDLFELQKYPFRKYKIKYMESKRGHLTPEELGRLEKVAPKLQRTLR 234

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVELPDGFMKL 244
                F F  Y+GLR SD       +          ++S         + + L      L
Sbjct: 235 RTLDMFLFSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTDVNVRLPLFLLFDGKAL 294

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                  K              +  +   K     A ++K  S H  R  +AT+    GA
Sbjct: 295 AVYERYRKRYSRTLFGVSVSANSNVNKQLKRICRLAEIDKRLSFHMARHTNATLLLYNGA 354

Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327
               +    G K+V   E Y+   D
Sbjct: 355 NITTVQKLLGHKSVRTTEIYSDIMD 379


>gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii
           DSM 18315]
          Length = 354

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 76  ADFLEYYRKQLRKHDQK------WEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLLSAK 129

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + T +SA  + ++ R   K   R   +  N    +E+ + +       + E++ 
Sbjct: 130 KLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVEELY 189

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    + A  F   + LR SD      + + +     K     T         
Sbjct: 190 KLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAEDII 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +   I  K     AG+ K  + H  R+  AT+ A
Sbjct: 250 PISEEALGLIGYNSEKKGFVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQA 309

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 310 AAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 348


>gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
 gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226]
          Length = 320

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606]
 gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606]
          Length = 337

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 103/303 (33%), Gaps = 18/303 (5%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
            +G+RIR     + +   A+      +   +++++ P  K   L  L   +         
Sbjct: 20  RNGKRIR-RKFDKKSEAVAFEKYTLYNHHNKKWLSKPTDKRR-LSELTQIWWD---LKGK 74

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF 144
                 S     +   + + D    +IT   I     +R+     PSS  + LT +  +F
Sbjct: 75  HEEHGKSNLGKIEIFTKITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMF 134

Query: 145 KWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              +  + +   +P    +R K +       T+E++    +        +      L +G
Sbjct: 135 TALIEAELFFGEHPIRGTKRLKEEKPETGYLTQEEIALLLAA--LDGDNKKIAILCLSTG 192

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
            R  ++ R   +++ +N  +    KT    TV + +   K++A    G      +  +  
Sbjct: 193 ARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPR-- 250

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                F    KA        ++ H +R   AT     G +   L    G   ++Q   Y 
Sbjct: 251 -----FRRTMKAIKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305

Query: 324 KGA 326
             A
Sbjct: 306 HFA 308


>gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism]
          Length = 318

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 52/302 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R+       +V +  ++  +  + I  +G    R +  + + + +       + A
Sbjct: 19  LLEQVRQRLRVKHYSVRTEQAYVGWIRRFILANGKRHPRDMGEREVEAFLTVLATKGNVA 78

Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L         + +    +V R KR        ++E++ +  +        
Sbjct: 79  AGTQNQALSALLFLYREVPKLELPWMENVVRAKRPRRIPAVLSREEVTRLLAA--LEGPA 136

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            L    L  +G+R  +  R  ++ +  +     ++  K G    V LP    + L     
Sbjct: 137 WLMAALLYGTGMRLMECIRLRIKDVDFDRGEIVVRNGKGGKDRRVPLPLRLRESLRAAIE 196

Query: 251 GKETFFI---------------------------------------------NNDKQKMN 265
                                                                  +  ++
Sbjct: 197 HACLLHASDLADGLGEAWLPHALARKYPNAARETGWQYVFPSPQRSVDPRSGKTRRHHVD 256

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +      ++    A ++K  + H +R   AT   +AG     +    G K V     YT
Sbjct: 257 DSVLQRAVRSARKLAMIDKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTMIYT 316

Query: 324 KG 325
             
Sbjct: 317 HV 318


>gi|157325443|ref|YP_001468868.1| gp28 [Listeria phage A006]
 gi|300765035|ref|ZP_07075023.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|66733448|gb|AAY53262.1| gp28 [Listeria phage A006]
 gi|300514335|gb|EFK41394.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 376

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 92/348 (26%), Gaps = 41/348 (11%)

Query: 21  IIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
             Y       G+          T   A ++A +    K                   E+ 
Sbjct: 11  WKYRVSYKEAGKYKVKSKSGFPTKKQALLAA-SEMEEKLHRGVDINAGEANFVEAFKEWY 69

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFL 137
            +      ++ +   ++       +         +     +  +     T +  +  +  
Sbjct: 70  TTFRKQKKSIENDKHYDYAIKFCEKYFVGLKINDVNRTTYQKAINEFAKTHAKETTRKRH 129

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF- 196
             +R   +  V +  +  +P   V  P  +T         + Q  K      +       
Sbjct: 130 VYVRSFIREMVYEGVILRDPTARVIIPDDETTYKDLKALSEEQVKKLVKELNNHFNPIHS 189

Query: 197 -----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------TIITVE 236
                 F + SG R S+        +     +IK  KT                +   + 
Sbjct: 190 SISVILFAIASGARFSEIIGLTWDCIDFVQKTIKINKTWDYKDTNTFSNTKNYSSNRIIT 249

Query: 237 LPDGFMKLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           + D  + +L                    +  FIN +    +    +   +   TK G+N
Sbjct: 250 IDDSTLSMLNKIKVYQSAEKLKDSSFNKNKLVFINTNNIPPSNNAINKSLRRYCTKLGIN 309

Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
              S HG+R   AT+          L    G  T+    ETY+   D 
Sbjct: 310 IAISVHGLRHTHATLLLYNDCNIKYLSKRLGHNTIVTTLETYSHVIDE 357


>gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)]
          Length = 293

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|226939837|ref|YP_002794910.1| Phage integrase [Laribacter hongkongensis HLHK9]
 gi|226714763|gb|ACO73901.1| Phage integrase [Laribacter hongkongensis HLHK9]
          Length = 416

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 27/281 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL   +SE+ K      L  ++   +++  + Q+    G+     I    IR+  +    
Sbjct: 89  TLDAWMSEWLKRCE-RYLKSSTLHDYKTIAWRQLSPVFGNHQIGDIKRSDIRAWCDGLTC 147

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +       L+  R     A+  E +  NP       +R+             +  +    
Sbjct: 148 SNKRIANILSVFRASLTAAMDDELIDTNPLSGWTYRRREEVKEDDIDPFTPDEQTAILEA 207

Query: 189 GSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNN--------------IFSIKTQKTGTII 233
             +       F  ++GLR S+      + +                   +   +   +  
Sbjct: 208 LPEAGCNMIRFAFWTGLRTSELVALEWKDIDWVGGKVSISKALTQRATKAETPKTRASRR 267

Query: 234 TVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVN-K 284
            V L    ++ L               +      +     Q      +     +AGV  +
Sbjct: 268 FVTLLQPALEALMAQKAVTFFSEHGRVWIDPRTGEPWTGDQAIRKTLWTPALRRAGVRYR 327

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
             +  R   A++   AG +   +    G  +       Y +
Sbjct: 328 RPYQTRHTFASMMLSAGESPVWVANQMGHASWTMIARVYGR 368


>gi|213963816|ref|ZP_03392064.1| integrase [Capnocytophaga sputigena Capno]
 gi|213953496|gb|EEB64830.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 20/275 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVES 125
           K  + ++ K    G+ A+++  S+   ++ +           D  +R++T + I      
Sbjct: 118 KKFLKDFTKMYEKGTRALSTLKSYRLVYNHLRNFISYKYKRKDITFRELTEEFINDFDYY 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +      + ++  ++ +   AV QE +  +P  +      +        +E++++  ++
Sbjct: 178 LRINIGIVLTYILPLKKMTSMAVDQELIYKDPFRNF-HITMQETDRGYLVREEIEKLIAY 236

Query: 186 WSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +  +    R  F F  ++G    D  +    H+Q                       +
Sbjct: 237 EPKNKRIELTRDMFVFSCFTGFAFVDVQQLKKTHIQTFFDGNMWI--IKRRQKTNTASNV 294

Query: 243 KLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSA 294
           +LL +     + +      +    ++     +   K      G       S H  R    
Sbjct: 295 RLLEVAQNIIKKYEGLTKDDYLFPRICNATCNTHLKTIMADCGSVKHKPISFHWARHTFG 354

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T+    G     +    G K +   + Y K  +  
Sbjct: 355 TLFVTEGIPLESVSKMMGHKDLRTTQIYAKITNNK 389


>gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 90/306 (29%), Gaps = 38/306 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           K ++ EY         + N+ IS+ +  +Q ++         +T+  IR  ++       
Sbjct: 2   KKMLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPAE 61

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQ 181
                 S+  + L S+R  + WAV    +  NP   +   +      E I   T+E+ + 
Sbjct: 62  GKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDNEKIMWLTEEEFED 121

Query: 182 FKSFWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 +               + R     L Y+GLR  +     +  L   +  I+   
Sbjct: 122 LLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVG 181

Query: 229 T-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----- 282
               + TV + +  +  L      +            +   F      K +  G+     
Sbjct: 182 KGMKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIE 241

Query: 283 -------NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333
                    + H  R         A      ++    G   +     Y K +   +   +
Sbjct: 242 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAV 301

Query: 334 KNSRRI 339
           +   + 
Sbjct: 302 EALPKF 307


>gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 92/297 (30%), Gaps = 53/297 (17%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQ 150
            I    G+    K+   H++     +            +  +       +      A+++
Sbjct: 6   HIKPAIGNIKLAKLHPHHLQKLYNDKIENGRHDGRGGLSARTVELIHIVLHSALSQAIKE 65

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             V  N   + +RP+R+ + +R  T+E  +          +   AF   L +G+RC +  
Sbjct: 66  GLVVRNVSEATKRPRREKKEMRVLTEEQTR--LQAVLNTERLGTAFLVDLGTGMRCGELL 123

Query: 211 RAGVQHLQNNIFSIKTQK-----------------------TGTIITVELPDGFMKLLAM 247
               +++  N   I+ Q+                         +  ++ +P   +  L  
Sbjct: 124 ALKWENVDLNEGVIRVQQSLTRIRVEDSSLKTELRFQPLKTVKSRRSIPIPQSVIAALKS 183

Query: 248 TPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
               +                 F     Q ++    +  F     +AG+ K + H +R  
Sbjct: 184 HKSRQNQEKLKAGAAYNDLGLVFCTELGQPIDPRNLTRTFNRLLERAGIPKATLHSMRHS 243

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            AT   +       +    G   +    +TY+     I+     + ++  ++ +  P
Sbjct: 244 YATRLLEMNEHPKVVQELMGHSQISMTLDTYSHVMPEIKQA--AAAKLDDLLITKSP 298


>gi|317491548|ref|ZP_07949984.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921095|gb|EFV42418.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 387

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/353 (10%), Positives = 81/353 (22%), Gaps = 48/353 (13%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R+G     F    G+RIR      +    A                         +  
Sbjct: 4   KQRNGIYHCDFFTPSGKRIRQSL-GTTEKRQAKELHDKLKAEMWRTEKLGEAPVKLFEEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              +            S  + +S     +         +IT   I++ +   ++    A 
Sbjct: 63  CLRWLNEKSHK----RSLDADKSKIGFFLLHFRGVPIGEITNDRIQAALSKMENRSHRAR 118

Query: 135 QFLT-------------------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                                  +   ++        +                      
Sbjct: 119 WEKQRDRLMRDGKPVPEYKSKPVTQSTIYSHQAFMRSLLRIAANEWGWLNSVPVVKAKSP 178

Query: 176 KEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +    ++ +               R    F L +GLR S+        +           
Sbjct: 179 RGRRIRWLTKDEARRLLDELPVHFRSVVMFALATGLRRSNILNMEWSQIDMQRKMAWIHP 238

Query: 229 TG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------SIW 272
                   I V L D    +L         +   ++   +                 +  
Sbjct: 239 EDAKAGRAIGVALNDTACSVLRGQIGKHHRWVFVHEDSCIRPNGEVAPKLRKMRVDSNKA 298

Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +++   +AG+ +   H +R   A+    +G     L    GW++V+    Y  
Sbjct: 299 WRSALKRAGIEDFRFHDLRHTWASWLVQSGVPISALQEMGGWESVEMVRRYAH 351


>gi|291542126|emb|CBL15236.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63]
          Length = 392

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/363 (9%), Positives = 88/363 (24%), Gaps = 57/363 (15%)

Query: 16  TRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           T+ GKI Y  +    G  ++        F+       +                      
Sbjct: 26  TKKGKIKYRTKWISTGFEVKGNKKRAKEFLNEKCREYSKRN--------VDYCDMYFADY 77

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESRKH--- 128
           + E+        +  N+   +     + I+          +++    +    +       
Sbjct: 78  MVEWLDEIEP-EIRANTYRGYSGNVGNHIVPYFYPRRIKIQELKVSDLEDFYKYLVFEKS 136

Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   +P++       +      A R+  + +N      +P       +   +  + 
Sbjct: 137 KSDGSEPLSPTTITHIHRCISKALNDAARKGIITVNVATLARKPHSVKFKSQYLNERQVN 196

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------- 233
           +      + +   +        GLR  +      + +     +I   +T           
Sbjct: 197 ELL-KTVKDTPIEVPVTICAVFGLRRGEVLGLKWKAVDMENRTITISETLQQHVGGSYTS 255

Query: 234 -----------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                       +   +LL    I  +   +  D + +     +
Sbjct: 256 PPKTESSYRTLPIPDKVFQYLLAQKRKQESEKRLLGSGYIDNDYVCVWPDGKVITPNYLT 315

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
             F     ++ +     H +R   A+   + G T  ++    G  +       Y      
Sbjct: 316 KNFHQMIVESDLPNIRLHDLRHSVASNLLNMGFTVVQVQEWLGHSSAATTLNFYAHVDKT 375

Query: 329 IRL 331
            +L
Sbjct: 376 SKL 378


>gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 360

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 106/354 (29%), Gaps = 40/354 (11%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKPTTL-------KWLI 75
           Y RK      R+    +      Y      +       +     K  T          + 
Sbjct: 6   YHRKDGRWEGRIRKSEKKCSKRMYRYIYGKTKESVISMLQEIYHKEKTFHICDKILSQIF 65

Query: 76  SEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPS 131
            E+  +     + +++  ++       I+ + G+     I    + S +   +S+K +  
Sbjct: 66  EEWFTNVK-QKVKISTACNYLMKAKKHILPEFGEKTISSIQKDSLYSFIKTLQSKKLSSR 124

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                L  +  +FK+AV   ++       V   K+ ++       E        +S  ++
Sbjct: 125 YIRDILVLLSSVFKYAVNTYHIYNPFDDVVIPKKKYSDVKLLDEDEQQILRDELFSNPNR 184

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------------- 232
             L      Y+G+R  + C    + +      +  +KT                      
Sbjct: 185 TTLGIALSYYTGIRIGELCALQWKDIDIEKRLLTVRKTVQRIQLPYGTPKTKVIITEPKS 244

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
                 + +PD  + L+ +     + F ++  ++          F +     G+     H
Sbjct: 245 ESSVRVIPIPDCIITLMKIYKGNLDDFILSGKEKPTEPRTMQYRFNSFLKNVGLPSIHFH 304

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRIS 340
            +R   A+     GA    L    G  +V+     Y   +  ++   +   R+ 
Sbjct: 305 ALRHLFASNCIKLGADVKSLSEILGHSSVEITLNRYVHSSFEMKR--EYLNRLD 356


>gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 286

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 24/269 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---- 134
           R+S      + ++  ++      +     + D  ++  + I   +   K    +      
Sbjct: 12  RRSIDIAGKSQSTLTNYGRCLAHMGLYF-ECDLLELDDEQILDYLYMLKSKRKTPSDSFF 70

Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +  +R L++   ++E   I P +  +            ++++++            R
Sbjct: 71  MHTVYGLRYLYRIFEQRESRVILPSIERQ-----KALPVVLSQQEVRLLLKTPKLLKH-R 124

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           L    L   GLR  + C   + HL        ++  K      V L D  ++ +      
Sbjct: 125 LMMALLYGCGLRNFELCNLKIVHLDLERKQLHVQQGKGRKDRYVPLCDLLVRGVNTYLQA 184

Query: 252 KETFFINNDKQKM--------NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301
           ++      + Q          +        +    ++G+ K  +AH +R   AT   + G
Sbjct: 185 EKPTEYLFNGQPDEDGGHTQLSTRGVQWVMRQARQQSGIKKQITAHTLRHSYATHLLEMG 244

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIR 330
                L    G   +     Y   A   R
Sbjct: 245 TDIMTLKDLLGHGDIQTTLGYLHVARVGR 273


>gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104]
 gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 101/378 (26%), Gaps = 54/378 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           +S        ++ ++      
Sbjct: 51  RYAYKYVDTFGKPQFVYSWK-----LVPTDKTPAGKREDISLREKEKEIQKDLDDGIDTI 105

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++  N+++  E     +   + G      +     +      
Sbjct: 106 GKKMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRM 165

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A++ + +  NP      +     TE   P T    + 
Sbjct: 166 KEKGLSYKTINNDKRSLKAAFYTAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEES 225

Query: 182 FKSFWS---EGSQPRLAFEFLLYSGLRCSDSCR-------AGVQHLQNNIFSIKTQKTGT 231
           F SF        +   A   LL +GLR S+ C           + +  +   ++    G 
Sbjct: 226 FLSFIQGDKVYQKHYDAIVILLGTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGY 285

Query: 232 IITVELPDGFMKLLAMTPIGKETFFI----------------------NNDKQKMNATQF 269
            I        ++ + M     + F                          +   M A  +
Sbjct: 286 YIDEPKTQSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDY 345

Query: 270 SIWFKAKATKAG------VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F     K        + K+   H +R    T  A+AG     L    G   +     
Sbjct: 346 GGMFGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLN 405

Query: 322 YTKGA--DRIRLGIKNSR 337
           Y   A  D  R  ++   
Sbjct: 406 YYAHATFDSARAEMERLA 423


>gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda]
 gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda]
          Length = 363

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 82/295 (27%), Gaps = 36/295 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHT 129
              Y  S +    +  SR +  S+ + +    G           +   H+ +  E  + T
Sbjct: 72  ARAYLLSLN----SHRSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDT 127

Query: 130 PS---SAIQFLTSMR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +   +L++++          L      Q   A+        P  +          
Sbjct: 128 GRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRAL 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVE 236
                      G++       +L  GLR S+         +  +       K        
Sbjct: 188 FAVCEADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAY 247

Query: 237 LPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           +P G  + L +               +   F +    ++         + +  +AG+   
Sbjct: 248 VPAGAWQRLQIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKC 307

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           S H +R+  AT   D G     +    G  +V   + Y +  ++         R+
Sbjct: 308 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQR--LQDARDRL 360


>gi|324997183|ref|ZP_08118295.1| phage integrase family protein [Pseudonocardia sp. P1]
          Length = 378

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 112/370 (30%), Gaps = 41/370 (11%)

Query: 14  ERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            +   G+    +R    G++I                    ++        P     T  
Sbjct: 5   RKLSDGRWQAQYRPYPGGKQIT--RTTRKKSDAQRWLDEQTTSLISGNYVDPNAGRVTFG 62

Query: 73  WLISEYRK-------SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                +         +A   +LA  S   ++    +++R   +   +++ T   R    +
Sbjct: 63  VYFERWSARQIWVPGTARAMNLAARSVPFWDVPLQRLLRSHIELWIKEMQTAD-RGPDRA 121

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +    + ++R + + AV+   +A +P   V+ P+ +   +              
Sbjct: 122 AGLAPGTIRTRVNNVRAVLRGAVKDRVLATDPSEGVKLPRARRTDVAMELPTSDDVRVLL 181

Query: 186 WSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFSIKTQKT 229
                +         ++GLR  +                  R  VQ   N    I+  K 
Sbjct: 182 EMADRRFVCFIALCAFAGLRLGEAAAVQVGDFDLAARRLVVRRQVQRANNQAVEIRAPKY 241

Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           G+  TV L DG + ++ +          +   F   +    +      W++     AG  
Sbjct: 242 GSERTVHLADGLVDIVRVHLAGLSGRGSERWLFRGENGNPPHQNTVGYWWRKTRRDAGHP 301

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNSR 337
               H +R F A+    AG     +    G  +      TY        DR R    +  
Sbjct: 302 TIRLHDLRHFFASGLIAAGCDVVTVQRALGHSSATVTLSTYAHLWPTAEDRTRAAADSM- 360

Query: 338 RISSVVDSDD 347
            +++V+ + D
Sbjct: 361 -LTAVLGATD 369


>gi|301165275|emb|CBW24846.1| putative integrase [Bacteroides fragilis 638R]
          Length = 404

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 26/284 (9%)

Query: 78  YRKSAHWGSLAVN----SRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP- 130
           +  S     L  +    +  ++ S    + R  G  DF + K++++ I         +  
Sbjct: 111 FYFSRKIRELRESGHEGTARAYASSLRSMQRYLGKKDFPFIKLSSRIISDYQGKLLASGI 170

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKS 184
             ++   +L +++ LF+   R+  + +         K +    R      ++        
Sbjct: 171 CDNTIGFYLHNIKALFRKGCREMGLELPCPFRDISIKTEKTLKRSLDPVVIKTLSAIELE 230

Query: 185 FWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             S  S  R  F F  Y+ G+   D      +H+       +  KT  ++ V +     +
Sbjct: 231 KDSPLSLARDIFMFSFYTRGMSFVDIALLKKRHVFPGEICYRRHKTDQLMRVGINKEISR 290

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +L         +               +    +        +   G+      H  R   
Sbjct: 291 ILERYKNVPGEYIFPLFPAERDPYAGYRSAYHRIRYSLGKISRVIGLEFPLRLHAARHSW 350

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           ATI+   GA+ H +    G  +      Y K  D     +    
Sbjct: 351 ATIAKVNGASVHVIGECLGHTSEKTTRIYLKELD--HSALDAVN 392


>gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
 gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434]
          Length = 167

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 12/158 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249
           + +   E L  +G+R S+ C   +  +     +++   K      V       + L    
Sbjct: 6   RDQALVEMLYATGVRVSELCALDLADVDRGERTVRVLGKGNKERVVPYGTPAARALEGWW 65

Query: 250 IGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
             +      +  Q         +++           A +AGV     HG+R  +AT    
Sbjct: 66  QLRARLARPDSGQALFLGARGGRVDPRTVRQVVHRLAAEAGVPDLGPHGLRHSAATHVLS 125

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
            GA    +    G  ++   + YT   A+R+R   + +
Sbjct: 126 GGADLRSVQELLGHSSLATTQRYTHVSAERLRAVYEQA 163


>gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361]
 gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361]
          Length = 293

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 24/262 (9%)

Query: 108 DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           D     IT           + R+   S+    L  +  L   AV +  +  NP  + +  
Sbjct: 3   DIPIGTITEDLFEEYRFFLKKRRLKASTINSNLCWLSRLMFRAVSKRIIRCNPFENAKFE 62

Query: 165 KRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           K + +    +      +   K    E    RL F F  ++GL  SD      +H+Q    
Sbjct: 63  KVEKKIRFLQKSDVMKVMAMKMNDKEAELARLMFVFSCFTGLAISDMENLEYKHIQTAAD 122

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------------FINNDKQKMNAT 267
                +     T       +  +A T I                          +  + +
Sbjct: 123 GQMYIRKERQKTKVEFIVPLHPIAETIISHCRKEPERSEVQQTVKEKGDHLVFHRDCSRS 182

Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                        G+    S H  R    T+S  AG     +    G  ++   + Y + 
Sbjct: 183 VMDAKLSIVGKACGIRQRLSFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQV 242

Query: 326 ADRIRLGIKNSRRISSVVDSDD 347
            DR     ++  R+ +   + D
Sbjct: 243 TDRK--ISEDMDRLIAKYKAKD 262


>gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7]
 gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7]
          Length = 397

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 95/365 (26%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G   Y +          P P      P+            E       K 
Sbjct: 24  KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            TL  L ++  ++A   ++  ++    E     +   K G      I     +      K
Sbjct: 82  MTLCQLYAK--QNAQRANVKKSTMKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMK 139

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQF 182
                 ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q  
Sbjct: 140 EKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKIALTEEQEQAL 199

Query: 183 KSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
            SF    +     ++ +L    +GLR S+ C   V  +      +               
Sbjct: 200 LSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYY 259

Query: 230 ----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                    +  + P     ++               K  ++ +
Sbjct: 260 IETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNPKGKPKVAIDYS 319

Query: 268 QFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET- 321
              +    K  K  ++      + H +R    T  A       +L    G   +      
Sbjct: 320 TLFVRMVKKYNKHHMDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNW 379

Query: 322 YTKGA 326
           Y   +
Sbjct: 380 YAHAS 384


>gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
 gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80]
          Length = 320

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61]
 gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52]
 gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61]
 gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52]
          Length = 304

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           + EY         + N+ +S+ +  +Q ++         +T+  IR  ++          
Sbjct: 2   LREYEDYLRGKGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKWIQQMLHPDEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L ++R  + WAV Q YV  NP   +   +      E I   T+E+ +    
Sbjct: 62  FAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLTEEEFEDLLH 121

Query: 185 FWS-------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
                           +  + R      +Y+GLR  +     +  +   +  ++      
Sbjct: 122 RMRKMLAHSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMKRLRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKAT 278
            + TV + +  +  L      +            +   F                    +
Sbjct: 182 KVRTVPISNILLAELQDWLAFRAEMSKKKPHVAASPYVFYSQRSPKFSVRGIQRMVEGYS 241

Query: 279 KAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
             G   + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|167043113|gb|ABZ07823.1| putative Phage integrase family protein [uncultured marine
           microorganism HF4000_ANIW141I9]
          Length = 359

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 91/341 (26%), Gaps = 26/341 (7%)

Query: 15  RTRHGKIIYYFRKGHG------RRIRLPYPHESTFIPAYMSALTGSTPKR---------- 58
           + R GK     +          ++I L    ++T +   +         +          
Sbjct: 5   KNRRGKWYARVQWRDEFYKMKEKQIPLRTKSKATALQRVLKVNKKEDDIKSGLEFSFPWL 64

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---IT 115
                 +     L   I EY K         ++       F  + +  G+    +   IT
Sbjct: 65  NDEGETKVVRYVLNDAIEEYLKYLQNNGSKQSTIERAHFCFLNLKKVLGEKFPVERIGIT 124

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
              +       + T +     LT +R    W    + V       V   K      R   
Sbjct: 125 EIELFKAYHKGRLTDNGINIILTRIRAFVNWLADTKGVLTL-APKVRFIKVPKHPPRYLK 183

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + D+             + AF+    +G R     R       +  + +   +       
Sbjct: 184 EADLNAIMELKWLDIHYKDAFKLYWETGAR----LREIFYGSIDGRWLVVNAEDSKSGMP 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                    ++        +  +    K    ++S  FK  A   G  +   H +R   A
Sbjct: 240 REILLQQHHISSIQEMHRRWNESKANFKTFTLRYSKMFKKVAVSIGREDLHFHNLRDTFA 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            +        +++    G  +V   E Y    +  RL + +
Sbjct: 300 VMRYLETRDIYQVSKELGHSSVKVTEKYA-NFNIRRLQMDH 339


>gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2]
 gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2]
          Length = 308

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 16/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGV 123
           +  ++  L ++Y           + + +  S+  +I        +     +    I   +
Sbjct: 37  EQYSVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTL 93

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R ++ ++  + + ++  L + A +   +   P    ++ +          +E      
Sbjct: 94  RERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAA 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    RL   FL+ +G R  ++       +Q    +    K+    TV L     K
Sbjct: 154 IKSRCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARK 212

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISAD 299
              +     +  F   ++ +     F   +     + G+        H +R   A+    
Sbjct: 213 ASHIPHERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     +    G +T+     Y   A
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 405

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/382 (11%), Positives = 89/382 (23%), Gaps = 55/382 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKR--E 59
             +       G   +      G+R  L               + A   A     P    E
Sbjct: 28  KGLLLRVQPSGVKSFIVTWARGKRRTLGRHPVMTVAAARHAALAALTEASQHGAPLAVIE 87

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +P TL+       +      L      +            G     +I  + +
Sbjct: 88  AQQPASARPQTLREFAEGDYRRWVRRELKRGD-EAVNRILRVFGPLLGA-PLPQIDRRAV 145

Query: 120 RSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAIN-------------------- 156
              + +R+H  +S     + L +++ +   A+    +  +                    
Sbjct: 146 EDIITARRHEGASVATTNRDLAAIKGILTKALEWSLITTHPLERLKASREVGSSIVRYLS 205

Query: 157 -----------PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF--LLYSG 203
                           ER   +  G     +        + +EG    L       L +G
Sbjct: 206 PEEGARLRAALQAREQERRAHRESGNTWCKERGGDGRPMWPAEGYTDHLMPMVLLALNTG 265

Query: 204 LRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           LR  +       H       +       K+G    V L    + +L           +  
Sbjct: 266 LRRGELFGLTWSHANLTTKVLTVAAGNAKSGRTRHVPLNAEALDVLIRWRRQAGGAGLVF 325

Query: 260 DKQKMNA-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                         ++  A  A +     H +R   A+     G   + +    G   + 
Sbjct: 326 PNPAGRRFDNIQTSWERLAAAAELVEFRLHDLRHSFASKLVMRGVDLNTVRELLGHADIK 385

Query: 318 QAETYTKGADRIRLGIKNSRRI 339
               Y   A       +   ++
Sbjct: 386 MTLRYAHLAPDK--LAEAVAKL 405


>gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 284

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 92/274 (33%), Gaps = 23/274 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
            I +++         ++++    +   + +   G     +I+   I    E     P   
Sbjct: 4   YIIQFQNYLQQSGYGLSTQRMLPACVREFLEYGGFKSIVEISPGIIVLFYEWLHIRPLKY 63

Query: 132 --------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                       ++ +++V F W    + +  NP   ++  +  +      + E ++   
Sbjct: 64  RSGALSGIMISHYVYALKVFFSWQESSDGLQYNPMSGLKFRRHASGRREALSVEVVEA-L 122

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              +   + ++        GLR S+          +++ +  +++ K  +   + L    
Sbjct: 123 FTAAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLYVRSGKGASRRVIPLTGKV 182

Query: 242 MKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
              L +               F +N + ++M+ + ++   K    +AG+    S H +R 
Sbjct: 183 AGELGVYLEEYRKSGAVEKGAFMLNREGRRMSGSSYNRLLKGLVGRAGLWQGISLHYLRH 242

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT     G +   +    G + ++  + Y K 
Sbjct: 243 SIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKV 276


>gi|26989021|ref|NP_744446.1| integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
 gi|24983844|gb|AAN67910.1|AE016423_5 integrative genetic element Ppu40, integrase [Pseudomonas putida
           KT2440]
          Length = 274

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 20/249 (8%)

Query: 102 IIRKSG-DFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +++  G D     ITT+ I       E   ++ S+  + L+ + ++ K AV   ++   P
Sbjct: 8   VLKALGADTLLSDITTEAITEMVLEFEDLGNSGSTVNRKLSLLSMVLKTAVNHNWLLSVP 67

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
            +   +  +         +E            +         + +G R ++         
Sbjct: 68  RMIRRKEGKHRIRWMNTEEEGNVLKACQHLGLNCLHDFIIVAVDTGFRRAELLGLSAPDF 127

Query: 218 QNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
           Q  +  +     K G    +       ++L    +   TF           +     +  
Sbjct: 128 QEGMIHLYAGQTKNGDARAIPATSRVARILHRRRMNLTTFEGL------TVSSLRHQWAT 181

Query: 276 KATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD---- 327
                G+ +      H +R   A+     G     +    G K ++    Y   A     
Sbjct: 182 LRAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLM 241

Query: 328 RIRLGIKNS 336
           + R  ++ +
Sbjct: 242 QARNALEAA 250


>gi|295107441|emb|CBL04984.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 264

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 80/271 (29%), Gaps = 16/271 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           + ++ +       A N+  S+     Q+ +     +   IT + +    E    +  P +
Sbjct: 1   MKDFEEYLQAQDYAANTISSYLFAAKQLEQ-----NISPITNQSLLEHKEWLVSSFAPKT 55

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A   + ++ V   +            +  +           + +      +         
Sbjct: 56  ANNRIGAINVYLDFLGYNGMRLKGVRVQQKPFLNNVISNDEYRRLRDGLTRDEDWF---W 112

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                FL  +G+R S+  +    H+      I ++           +   + L+      
Sbjct: 113 YFVVRFLACTGVRVSELRKFEHAHVLAGHMDIVSKGQKLRRVYIPANLQTEALSWCTREG 172

Query: 253 ETFFI-NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
           +T  +   D+  + +   ++  K  A +  +N      H  R   A            L 
Sbjct: 173 KTEGVLFGDRSALTSRGIALGLKRAAERYDINPDVVYPHSFRHLFAKNFISKNPDIAFLA 232

Query: 309 ATYGWKTVDQAETYTK--GADRIRLGIKNSR 337
              G ++++    Y +   A++ R   +   
Sbjct: 233 DLMGHESIETTRIYLRRTAAEQRRAVDEAID 263


>gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism]
          Length = 300

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 76/301 (25%), Gaps = 52/301 (17%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
           + + R        ++ +  ++  +  + I   G      +    + + + +       SA
Sbjct: 2   LEQMRSVIRVKHYSLATEKNYLQWAKRFILFHGKRHPVDMGAPDVEAFLSALATERNVSA 61

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                +M  +        ++ +     V R K         T+++     +         
Sbjct: 62  STQNQAMHAILFLYRDVLHIDLPWLDGVTRAKVSKRLPSVLTQQETAALLAH--VSGTNG 119

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           L    L  +G+R  +  R  ++ +     I  I+  K     T  LP      L      
Sbjct: 120 LIIRMLYGTGMRIKECLRLRIKDIDLARRIIVIREGKGNKDRTTMLPGSLADDLIQHIDE 179

Query: 252 KETFFI---------------------------------------------NNDKQKMNA 266
           +  +                                               +  +     
Sbjct: 180 RLRWHNLDLSTGHADVELPDAIARKYPRAASEWAWQYVFAAPTYSTDPRTGSVRRHHWCE 239

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  K  A +A ++K    H +R   AT   + G+    +    G   V     YT 
Sbjct: 240 RNIQRAVKVAAQQARIHKLVHPHTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTH 299

Query: 325 G 325
            
Sbjct: 300 V 300


>gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae]
 gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae]
 gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52]
 gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3]
 gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457]
 gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33]
 gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2]
 gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395]
 gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9]
 gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21]
 gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33]
 gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286]
 gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236]
 gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10]
 gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101]
 gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27]
 gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1]
 gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385]
 gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757]
 gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
 gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4]
          Length = 320

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 200

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 7/168 (4%)

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               + +E    R AF F LY GL   +      +++      +K +++           
Sbjct: 34  MACHYDNENPTVRQAFIFCLYCGLHLCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGV 93

Query: 241 FMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
            + L   L        T                   K    +AG++K  S H  R   A 
Sbjct: 94  VIPLNDGLLSIIGEAPTDKNCLIFDLSTYESCYKSVKRWVKRAGIDKHMSWHCARHSFAV 153

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              + G     + +  G   +   E YT+  D  +L  +    +S + 
Sbjct: 154 NILNNGTNIKTIASLLGHSGLKHTEKYTRAVD--KLKEEAINSLSELK 199


>gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510]
 gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510]
          Length = 301

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/292 (10%), Positives = 70/292 (23%), Gaps = 44/292 (15%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKW 146
            +  +             D     +T   +      R      PSS  + L  ++     
Sbjct: 7   RTHKTTVQSLKVCFADLVDRKLDDVTPLDVERWRTQRLNDGLKPSSVNRQLDDLKSAMTK 66

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF---------- 196
           A        +P   V+R K  +     +  ++ +       +  + RL            
Sbjct: 67  AETWIKGFSSPIAGVKRVKVDSNRRVRFLSDEEETSLRRALDEREERLRQGRDNANVWRR 126

Query: 197 -----------------------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
                                     L +G+R  +        +      +    T    
Sbjct: 127 ERDYELLPDLRLLAYADHLKPLVLLSLNTGMRQGEVFALRWSDVDPQRREVTVAGTTAKS 186

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGV-NKSAH 287
                + + D   K+L+          +    +  +        ++     A + +   H
Sbjct: 187 GQTRHIPMNDEAHKVLSRWRTQSGGTGLVFPGRDGSKMNNVRTSWEGVLETAEISDFRWH 246

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +R   A+    AG   + +    G   +     Y   A   +       ++
Sbjct: 247 DLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHLAPEHKAA--AVAKL 296


>gi|282926431|ref|ZP_06334063.1| integrase [Staphylococcus aureus A10102]
 gi|282591760|gb|EFB96831.1| integrase [Staphylococcus aureus A10102]
          Length = 401

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 118/401 (29%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++   K  YY +         +R+   L    + +   A          K   
Sbjct: 2   WIEKFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNN 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  M+         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 --------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F       M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G +      + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHRDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|297620069|ref|YP_003708174.1| integrase family protein [Methanococcus voltae A3]
 gi|297379046|gb|ADI37201.1| integrase family protein [Methanococcus voltae A3]
          Length = 320

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 77/293 (26%), Gaps = 28/293 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT-- 129
            I+++R+   +  +  N+  S  S     +      D     +            ++   
Sbjct: 26  WIAQFREEREFDRIKENTIKSDISRLKVFLAFCKKLDKEPDTLNRSEFTKFFNYLENERK 85

Query: 130 -PSSAIQFLTSMRVLFKW-------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +S IQ+   ++V ++            E          E     +   +   +     
Sbjct: 86  LGNSVIQYFKLLKVFYRVLRLHNFKEFETECKERRRFSKFEVKHYDSIDSKILNEILKAI 145

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPD 239
            +       +  L    L  +G R S+      +        F I+  K+     V    
Sbjct: 146 LQHRSRSNLRDALMIRMLWDTGCRVSEVIGITYEDCDFKEAKFRIRNTKSSNERFVVCSS 205

Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNKS---- 285
             +  L            ++   +            +  +         +  + K+    
Sbjct: 206 DTLNALKEYVKYNVNTGNSDPIFQSIRGGPVRRGWLSQVYRNAVVKLKEQGKIPKNRRVV 265

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
            H +R   A    + G     +    G  +++    Y    +R  + +   ++
Sbjct: 266 VHSLRHGRAVELLNKGVPIEVVKEYLGHSSIETTLFYAHSKERTNILLNTIKK 318


>gi|315612370|ref|ZP_07887283.1| integrase [Streptococcus sanguinis ATCC 49296]
 gi|315315351|gb|EFU63390.1| integrase [Streptococcus sanguinis ATCC 49296]
          Length = 382

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 100/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +ALT    + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGLTTLPQA-RAALTEIEQQIQD 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
           +        TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  LELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKPKFGSALLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDVTQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|254192266|ref|ZP_04898755.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157987461|gb|EDO95237.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 102/380 (26%), Gaps = 56/380 (14%)

Query: 1   MTPSLRLPPFVTKERTRHG---KIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTG-- 53
           M    RLP  +       G   ++ +Y+R    R      P      +       +    
Sbjct: 1   MERKPRLPTGIEVRTGARGASLRVRFYYRGEECRETLKMEPTPKNIQYADRLRGEILRKI 60

Query: 54  ------------STPKREYINSPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFES 97
                        + +     +      T+   + ++     K+     ++ ++   +  
Sbjct: 61  EMGTFNYGEYFPESKRAATPRAASPSEVTVGERLDDFMTQARKAVAKTRMSPSTLEGYRK 120

Query: 98  YFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
             D ++  + G      +    +R  +     T  +A   L  +  +   A+  E +  N
Sbjct: 121 VVDGRLRPRWGAVRLVDVRPADLRKWISDLDVTLKTARNILGPLGSVLADALNDELIDEN 180

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFW----------SEGSQPRLAFEFLLYSGLRC 206
           P   ++  K  ++  RP   E                     G   R  F+F  +SG+R 
Sbjct: 181 PLTKIDVRKLLSKTTRPSDYEVDPFSIDEIRAILAAADELYPGGAARNLFQFAFWSGMRT 240

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTI------------ITVELPDGFMKLLA-------- 246
           S+       H+  N   ++ +    +              V L       L         
Sbjct: 241 SELIALDWLHVDLNAGVVRVRNAQVVGTMKTTKTKAGLRDVLLLPSARAALEAQREVTRG 300

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAH 305
           M          +      +       +     KA V     +  R   A++    G    
Sbjct: 301 MEHNRVFVVPWHGRPWSGDKQIRVNCWTYVLKKAEVRYRNPYQTRHTFASMLLSRGENPL 360

Query: 306 ELMATYGWKTVDQ-AETYTK 324
            +    G    +   +TY K
Sbjct: 361 WVAQQMGHVDTEMITKTYGK 380


>gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus]
          Length = 304

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           ++EY         + N+ IS+ +  +   +         +T   IR  ++          
Sbjct: 2   LNEYVIYLQEKGASPNTIISYTNDLNIFFQDLHIRPSDYVTPADIRKWIQQMLNPAEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV+   +  NP   +   +     TE I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVKHHKIEQNPMKDIQDLKSADEDTEKIMWLTEEEFEDLLQ 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|327192385|gb|EGE59347.1| DNA integration/recombination/inversion protein [Rhizobium etli
           CNPAF512]
          Length = 427

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 98/362 (27%), Gaps = 37/362 (10%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW---- 73
            G   +  R     +  +          A   A        E  +   +K   L      
Sbjct: 42  GGGKSWAVRYKGKPKFTIGSVGAWKLADARKEAGRIMRAYDEGGDPRAEKKELLSDDNLI 101

Query: 74  --LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--KH 128
             +++++ K         ++  + + Y D+ +I +        I  + I + ++      
Sbjct: 102 ENVLAQFVKRHVKRKNRDSTAQAQQRYIDKELIPRWKGKHVAAIRRRDIVTMLDDVVESG 161

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            P +A++ L   R  F WAV   ++  +PC+ V  P    +  R  +  +++        
Sbjct: 162 RPQAAVRLLALTRKFFNWAVGTGWLDASPCVGVPVPAPVVKRKRVLSDSELRWVWKGAEA 221

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK----- 243
              P      LL    +  +   A      + I                 +  +      
Sbjct: 222 IGWPFGPMVQLLILTGQRREEVAAASWPEFDLIGKEPGWTIPGGRAKNGNEQVVALAPTA 281

Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------------------- 282
             +L   P                +       K +  +A +                   
Sbjct: 282 VSILTSLPKVLGQSDFILSTNGDTSISGYSRGKRRLDEAMMKIARSEAEESGNDPDEVKL 341

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              + H +R+  AT   D G   H + A      V  A  Y   A   +   +   R   
Sbjct: 342 EPFTLHDLRRTLATRLGDLGVAPHTVEAILNHARVGVAAHYNH-ARYEKEKREALLRWER 400

Query: 342 VV 343
            +
Sbjct: 401 HI 402


>gi|309806813|ref|ZP_07700802.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
 gi|308166787|gb|EFO68977.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 03V1-b]
          Length = 373

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 38/358 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSP--R 65
             V K  T+ G I Y F+   G  I         +   +Y  A       +        +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKVWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   +  L +++  +    ++  ++   ++E Y   I  K G+    KIT   ++    
Sbjct: 65  QKQIKVNDLFNQWFDTYQ-TTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFAN 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
           +           L  +       +   Y+ +NP   +  PK+ T   R  +         
Sbjct: 124 ALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREEL 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------- 223
               K   S      L F  L  +GLR  ++       +  N                  
Sbjct: 184 DTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKY 243

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                +   ++ TV L     + L      ++                 +          
Sbjct: 244 IVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIY 303

Query: 277 ATKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +
Sbjct: 304 KQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSK 361


>gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)]
          Length = 297

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 198 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSF 257

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT S + GA    +    G   V   + YT   DR
Sbjct: 258 ATHSLEVGADIRTVQELLGHTDVKTTQIYTHVLDR 292


>gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVDAGMKAKGTLLKYRTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      +++       +        T  + +  +
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      N +        +     ++ A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 354

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 94/293 (32%), Gaps = 26/293 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKH 118
            + +++E         L  +    +     +  +K             G   + +I    
Sbjct: 58  FESVVNERYDFFDKYKLKADFLEHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDL 117

Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                E            + T +SA  + ++ R   K   R   +  N    +++ + + 
Sbjct: 118 CNKFREYLLTAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETED 177

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                 + +++ +      +    ++A  F   + LR SD      + + +     K   
Sbjct: 178 VVKEYLSVDELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVH 237

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286
             T          +   A+  IG  +       + +  +   I  K     AG+ K  + 
Sbjct: 238 IITQKNKAEDIIPISEEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITF 297

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           H  R+  AT+ A AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 298 HSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 348


>gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313]
 gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313]
          Length = 358

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/341 (8%), Positives = 86/341 (25%), Gaps = 27/341 (7%)

Query: 17  RHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + GK          G + R           A  +        +        +   L    
Sbjct: 6   KRGKSYTASVSVKDGPKYRKKSKSGFRTKSAAKAWAVEMENYKAKGFVSFDESQPLSEYF 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SA 133
            ++  +     ++  +++ + +    I     +     +     +  + +     S  + 
Sbjct: 66  HDWYTTYKL-DMSRATQMWYHTTELYIEEHMQNVTLGSLNRPTFQRFLNTLAKKYSDETV 124

Query: 134 IQFLTSM-----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +    M       ++   + ++ +        +      + +     + +  +      
Sbjct: 125 NKVRNIMHQAIKSAIYDDIIFKDPIDGIYAKGKQGKSSDLKYLEEPQMKALVDYIQSIDL 184

Query: 189 GSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTGTIITVELP 238
             +    +     L +G+R  ++     Q +               +  K     +    
Sbjct: 185 NVRTDSDMMILLALNTGVRYEEAAALTWQDMNQGVISINKAWEQVERAIKEPKTKSSVRK 244

Query: 239 DGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                 L       +       F+    + + +   +   K         K  + HG+R 
Sbjct: 245 ISVPATLIEQFHAWKRPEKATDFVFGMPRPITSAAVNKRLKVDLQAIKSPKIITFHGLRH 304

Query: 292 FSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRL 331
             A+     G     + A  G K+V      YT   D ++ 
Sbjct: 305 THASWLLSHGVDIQYVSARLGHKSVGMTLRVYTHMLDNLKR 345


>gi|160936350|ref|ZP_02083719.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440633|gb|EDP18371.1| hypothetical protein CLOBOL_01242 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 73/253 (28%), Gaps = 7/253 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++         +  +   +       ++  G  +  K      R+ + SR + P +  
Sbjct: 7   VEQFLDFLKEEEKSDATISKYTYELQMFLQFLGKREIGKELMIQYRTYLSSR-YRPQTVN 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L+++    K+    EY      +       +T  +     E + +      +     L
Sbjct: 66  GKLSAVNAFLKFTGLYEYRVKFLKVQRRAYIDETRELTQKEYERLMETAGRQGKYQLYYL 125

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTPIGK 252
               +  +G+R S+     V+ +      I  +    I+                  I  
Sbjct: 126 M-MTICSTGIRVSELRYVTVEAVMRGKAEIFMKGKYRIVIFPKNLAAQLKAFARKNGIRS 184

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
            + F     + ++ +      K    KAGV K     H  R   A     A      L  
Sbjct: 185 GSLFCTRSGRPLDRSNICHAMKKLCAKAGVKKDKVFPHNFRHLFARSFYAAEKNMAHLAD 244

Query: 310 TYGWKTVDQAETY 322
             G  +++    Y
Sbjct: 245 ILGHSSIETTRIY 257


>gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A]
 gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum
           DJO10A]
 gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
 gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC
 gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A]
 gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F]
          Length = 355

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 276 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQR 335

Query: 322 YTKGA 326
           YT  +
Sbjct: 336 YTHVS 340



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA        +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLT 116


>gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A]
 gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA]
 gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A]
          Length = 410

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 100/357 (28%), Gaps = 40/357 (11%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTG-----ST 55
            + +PP +   K     GK +        +RI L            Y   +       + 
Sbjct: 40  KMDVPPRLWDVKNSRASGKSV------EAQRINLAVDKIRVEVNRRYQELMQADGYVTAA 93

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------ 106
             ++   +   K  TL  L  ++          S A  +   + +  + I          
Sbjct: 94  KLKDAYLAIGVKQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKR 153

Query: 107 GDFDYRKI----TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D   +++    T          +K   ++   ++  ++ +   A    ++  NP     
Sbjct: 154 EDIPLKELNLTFTNDFEYFLCTEKKCRTNTVWGYMIVLKHIVSIARNDGHLPFNPFAGYI 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               ++      T+ ++Q       + +     R  F F +++GL  SD        LQ 
Sbjct: 214 N-SPESVDRGYLTQTEIQTLMDASMKNATHELVRDLFVFSVFTGLAYSDVKNLTADLLQT 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKA 275
                    T         +  ++LL +     E +       +     +    +   K 
Sbjct: 273 FFDGNLWIIT--RRKKTNTESNIRLLDVPKCIIEKYKGLARDGHVFPVPSNGSCNKILKD 330

Query: 276 KATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + G       H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 331 IGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 387


>gi|310828391|ref|YP_003960748.1| site-specific recombinase [Eubacterium limosum KIST612]
 gi|308740125|gb|ADO37785.1| site-specific recombinase [Eubacterium limosum KIST612]
          Length = 351

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 104/359 (28%), Gaps = 32/359 (8%)

Query: 5   LRLPPFVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSA---------LTG 53
           +RLP          GK    Y  RK  G +I             Y+           L  
Sbjct: 1   MRLPNGYGSVVKLSGKRRKPYIVRKTVGWKI---DEVTKKKKQEYVIIGYAPTKADGLQM 57

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                +          T + +  ++     + + + ++   + + +  +     +  +++
Sbjct: 58  LADYNKNPYDINASKITFEEVFKKW-SEKKFSTCSESNIKGYNASYK-LCETLYNKVFKE 115

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           I    ++  +++      +  +       L+ +A+  E    +    V+  + K +    
Sbjct: 116 IKLSDLQYIIDNCGKNYPTLRKLKVLFNQLYDYALMNEICNKDYSQHVDILQYKDKNPNQ 175

Query: 174 WTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           + ++     +    +  E  +       L+Y+G+R S+      + +           + 
Sbjct: 176 FNRKKFSDEQIKTLWDLENDRYCQIILMLIYNGVRISEFLNLKKEDVNLEKRFFDVIDSK 235

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAKATKAGVN 283
           T   +       K+ +      E                      +  +FK        +
Sbjct: 236 TENGIRKVPIAEKVFSFYQWWYEDHPECPYLIHTEDGKQFKYRNYYDSYFKPIMDNFNWD 295

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWK---TVDQAETYTKGADRIRLGIKNSRRI 339
           ++ H  R    ++ A A      +    G     ++ + + YT    +    +    +I
Sbjct: 296 QTPHCCRHTCISLLAAANVNETIIKKIVGHSGAMSLSE-KVYTHFDPQE--LVNAIDKI 351


>gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5]
          Length = 411

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/392 (11%), Positives = 95/392 (24%), Gaps = 74/392 (18%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + +Y +    GRR  +      T        L       +   + +    T+ ++   Y 
Sbjct: 25  RYVYTYTDPLGRRKYVYAQDLVTLREKEAQLLKDQMDGLDIYVAGKA---TVNFVFDRYM 81

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                 +L   ++ ++   +D+      G  +  +I    +              I  L 
Sbjct: 82  SLK--NNLKPTTKSNYLYMYDRFVRDTFGKRNIAEIKYSDVVQFYNYLVEKQELQINTLE 139

Query: 139 SMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           ++  L              R+           +    KT      T    + F  + +  
Sbjct: 140 TVHTLLHPTFQLAVRDDIIRKNPSDGVMAELKKNLGMKTGVRHALTIPQQRAFIEYIATH 199

Query: 190 SQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
                 +      L +G R  +      + +      I      T               
Sbjct: 200 PIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYKKRIICVNHNLTYYPVGEDRASENHIS 259

Query: 232 -------IITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFS 270
                  + T+ + D       M                      F N     MNA   +
Sbjct: 260 TPKTEAGMRTIPMLDAVKDAFEMIWEEQKEKGWTDAEIDGMTGFIFCNRYGNIMNAQSVN 319

Query: 271 IWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMATYGW 313
              K  ++                     N SAH +R    T   +       + +  G 
Sbjct: 320 RAIKRISSSYNATEEVEARKEHREPVLLPNFSAHNLRHTFCTRLCERETNLKVIQSIMGH 379

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           K +      Y +  +  +   +    +++ +D
Sbjct: 380 KDIQTTMDIYAEATEEKK--QETFEHLAATMD 409


>gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183]
 gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 89/326 (27%), Gaps = 47/326 (14%)

Query: 70  TLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTK 117
           TL+ L   +          ++ N+  ++ +  +   R   D               + T 
Sbjct: 5   TLQDLAERWLDHKRASGRGMSDNTEAAYRADLNAWGRALADHHAIDTPDQTRPLEALHTG 64

Query: 118 HIRSGVE--------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           H+ +               T ++  + ++++R    W VR  ++  +P   +E P+    
Sbjct: 65  HLTAEALTAAAASFYREGKTAATRSRRISALRGWCAWLVRTGHLTADPTTDLETPRLPRR 124

Query: 170 GIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHLQNN 220
                T   +           +G++ +               G R  +     V  +   
Sbjct: 125 LPVALTDAQLAAIVQAASTPWQGARAQWVRLDRALLALFAGAGARTGEVVALRVGDVICE 184

Query: 221 I--------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                    +  V       + L      ++   +  + + +  
Sbjct: 185 EDGGGLLRLRGKGGAHRNVPLHADAMQPVTDYLDERRALLGPFDAEDPLLVARNGKAITT 244

Query: 267 TQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                       +A V +     AH  R   A      GA+ +EL A  G + +     Y
Sbjct: 245 GMIEYRVDQWFRRAAVRRPEGELAHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIY 304

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
           TK A      +     +   + +  P
Sbjct: 305 TKVAAEGLKDVARVAPVLRHLRATRP 330


>gi|168756433|ref|ZP_02781440.1| prophage integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168770149|ref|ZP_02795156.1| prophage integrase [Escherichia coli O157:H7 str. EC4486]
 gi|195937932|ref|ZP_03083314.1| prophage integrase [Escherichia coli O157:H7 str. EC4024]
 gi|189356474|gb|EDU74893.1| prophage integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189361012|gb|EDU79431.1| prophage integrase [Escherichia coli O157:H7 str. EC4486]
 gi|326338720|gb|EGD62540.1| putative integrase prophage protein [Escherichia coli O157:H7 str.
           1125]
          Length = 412

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 106/359 (29%), Gaps = 32/359 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGS------------ 54
            +    ++ G  ++ FR  H    +R          F  A    +               
Sbjct: 28  GLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFPEFSLAEAREVRDELRRMIARGVDPV 87

Query: 55  -TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYR 112
              K   I    K   T + + + +        L   +  + E   +  ++   G +   
Sbjct: 88  TEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELRKPTLYNIEYEVYKYLVPFFGKYSIE 147

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--- 169
           KIT     + +++     +   + ++ +  +  +AV    +  NP L ++      +   
Sbjct: 148 KITAPVAINALDAVSDKNALQKKLISRLNEIMNYAVNCGALKANPLLKIKTAFTGKKNKS 207

Query: 170 ---GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIF 222
                     E +  + S          A  F + + +R  ++ +A    +       I 
Sbjct: 208 LAALPVERLPEFLSWWDSVPHTYQIAHNALLFQILTMVRPGEAIKAEWSEIDFDSGLWII 267

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                K      V L    + +L      K   ++    +  +A       K     +  
Sbjct: 268 PAHKMKCHREHVVPLSSQAISILRTMQEIKRGRYVFFSSRTKDAPMGRNTIKTPIAASKF 327

Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKG--ADRIRLGIKNS 336
               + HG R   +T+  + G     + A    K+     + Y +    ++ ++ ++  
Sbjct: 328 KGIVTLHGFRSMWSTLLNEEGFNPDVIEAALAHKSGDKIRDIYNRTIYLEQRKIMMQWV 386


>gi|51102922|gb|AAT96071.1| site-specific recombinase [Pseudomonas viridiflava]
          Length = 413

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 93/371 (25%), Gaps = 34/371 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            +       G   +  R             G    +               ++G     E
Sbjct: 33  GLYLRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAAELRKVVSGGADPLE 92

Query: 60  YINSPR-----KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
              + +      K  T +     + K+     LA ++    ++Y D+ I+   GD    K
Sbjct: 93  QKRAAKEAIDVAKSRTFRAAAEAWLKAKDEKGLAPSTLSKIKTYLDKDILPALGDIPLDK 152

Query: 114 ITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT         S +   +   A +  T +  +F  A+       +P   +     +    
Sbjct: 153 ITRTDCADLQASIEARNAHNVAEKCRTWVNQIFGRAIALGLTENDPGSRLRDIAAQAPKT 212

Query: 172 RPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SI 224
           +           D              R A    +++  R      A  + +        
Sbjct: 213 QQHPHLLEPELGDFLTALKTTPSRLTARTAAWLCIWTASRPGMVRLAEWKEVNLEAGLWT 272

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKA 280
                  +    +     + +            +          N T             
Sbjct: 273 TPATKMKMRRDFVCPLPSQAIEALKELHALTGRSRWLFPGVGAKNPTISENTINKVFATI 332

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKN 335
           G  +    HG R  ++T+  + G     + A    K    +  Y K      RI++    
Sbjct: 333 GYKRRLVGHGTRHTASTLLREHGFPKEHVEAQLAHKEGGVSGVYNKAQYLDHRIKMMQWY 392

Query: 336 SRRISSVVDSD 346
           +  + ++   +
Sbjct: 393 ADYLDALAAGN 403


>gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 282

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 74/241 (30%), Gaps = 15/241 (6%)

Query: 101 QIIRKSG-DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              R  G      KI    +   V        +P +  + ++S+  +     R++ +A  
Sbjct: 36  HFTRHYGLGLRVSKIDQAFMDLYVHELEKEGKSPGTINRCISSVSTVLHHCARRKLIAKP 95

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCR 211
                ++        R +     Q  +   +  +  R+        F +++G+R  +  R
Sbjct: 96  DVFERKK----EAPPREFFYSIDQLGEMVKAANTIFRMPELGDIILFAVHTGMRQGEVLR 151

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
                +  N   I   KT    T  +P        +     +    +   +  +      
Sbjct: 152 LVTSDIDFNFNVIHVHKTKNNTTRTVPINSQIKPMLERRVADAIDDHVFWEYQDKDTLLR 211

Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +      G++++   H +R    TI A  G   H++    G   +     Y K +   
Sbjct: 212 QLRKVTAYIGLDENYLFHTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAEA 271

Query: 330 R 330
           +
Sbjct: 272 K 272


>gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269]
          Length = 407

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 89/276 (32%), Gaps = 22/276 (7%)

Query: 91  SRISFESY---FDQIIRKSG------DFDYRKITTKHIRSGVESRK----HTPSSAIQFL 137
           ++ ++  +        +         D +  ++T   I       K     + ++AI+ L
Sbjct: 129 TKANYRKFDICKRHFTKFLEVKYARTDLNIIELTPIVIHDFDVYLKTVVGQSFNTAIKTL 188

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RL 194
            + + +  +  +      +P  ++   K K       T E++           +    R+
Sbjct: 189 KTFKTIVIFGRKTGVFNHDPFFNI-HFKTKRVDRGFLTDEEIDAIMHKEFTTQRLVNVRV 247

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++GL   D       ++           T            + +  M     E 
Sbjct: 248 IFLFSCFTGLAYVDVANLTPANIITMDGKQWIVTTRQKTDTPSHILLLDIPKMIIKKYEG 307

Query: 255 FFINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
              N+    + +  + + + K  A   G+NK  + H  R  S T+S  AG     +    
Sbjct: 308 KTKNDRLIPILSNQRMNSYLKEIADVCGINKNLTFHMARHTSGTMSLSAGIPIESIAKMI 367

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           G  ++   + Y +  D      ++  R+   +  ++
Sbjct: 368 GHASIASTQIYAQVTDNK--ISEDMDRLIRRLQKEE 401


>gi|310286587|ref|YP_003937845.1| site-specific recombinase, phage integrase family [Bifidobacterium
           bifidum S17]
 gi|309250523|gb|ADO52271.1| site-specific recombinase, phage integrase family [Bifidobacterium
           bifidum S17]
          Length = 416

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 97/389 (24%), Gaps = 63/389 (16%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R ++G   Y     R     R R       T   A                 P  K   L
Sbjct: 16  RDKNGTWHYRRELDRDPATGRPRRIEAKGRTKAEARTRFDAKVAEMERTGLMPGAKSPLL 75

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           K     +        +   +  +            G    + +T +HIR    +      
Sbjct: 76  KDYCERWLADYRTR-VKPTTYRTRAGRIRACCEVIGHVRLKDLTAEHIRLCTRTLGARLA 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+      S++++   A  +E + I+PC  V  P+ +   +     E  ++     +  
Sbjct: 135 SSTLKDHYVSLKMVLDQAELEELIPIDPCRRVRPPRVEQRNVDVLGPEQPKRMIEAAASM 194

Query: 190 SQPR--------------LAFEFLLYSGLRCS---------------------------- 207
            Q R              L FE    +G+R                              
Sbjct: 195 PQARRGKRRSDEDLEMWALLFELAFETGMREGERYALMPYELELRDGQPGIHVRQQIQRY 254

Query: 208 -------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                          H+   ++    +       V +       L            +  
Sbjct: 255 GKPENVVMPNWLEATHITGTLWLTTPKTRAAERFVPIGTQLWNRLWGWIRANNIGMRDFV 314

Query: 261 K-----QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                   + ++     +      AG+ +   H  R + AT++A A       +A  G  
Sbjct: 315 FTSARGNPVCSSTERYQWCKALKAAGLPQVKIHSARHWMATMAARANMPDDARIAVMGHT 374

Query: 315 TVDQAETYTK--GADRIRLGIKNSRRISS 341
           ++     YT    A   +L       +  
Sbjct: 375 SMQMTMRYTHRDAASLGQLMAAAIPDLGG 403


>gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319]
 gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319]
          Length = 414

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 88/316 (27%), Gaps = 32/316 (10%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            +  +      PTTL  +     +S       S A  +  +       +     D     
Sbjct: 90  LKNRLQGVAATPTTLLAMSKAELQSVKECVGKSRAEGTYQNLLYSDKLLTEFVKDKGMTD 149

Query: 114 ITTKHIRS--------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           I    I+          ++ R    ++  ++L  +  L   AV Q  +  NP  + +  K
Sbjct: 150 IVIATIQEDLFEEYRFYLKKRGLATATMNRYLCWLSRLMYRAVSQRLIRCNPFENAKYEK 209

Query: 166 RKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---- 219
            + +    +      +   +    E  Q R  F F  ++GL  +D      +H+Q     
Sbjct: 210 TEQKIRFLQKSDVGKLMALRVIDKEAEQARRMFVFACFTGLAIADMEHLQYRHIQMSADG 269

Query: 220 -----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                       +  I          +         +      KE           + + 
Sbjct: 270 QKYIRKGRQKTKMEFIVPLHPIAEAIINQCKKERPSMKEMQTVKEKGDDFIFHCACSRSV 329

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            S          G+ +    H  R    T+S  AG     +    G  ++   + Y +  
Sbjct: 330 MSKNLSIVGKACGIRERLSYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVT 389

Query: 327 DRIRLGIKNSRRISSV 342
           D      ++  R+   
Sbjct: 390 DNK--ISEDMDRLIRK 403


>gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 11/253 (4%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142
               +++ +  +    +       D++ +T   +R   +  +   ++     + +  +R 
Sbjct: 120 DKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTIAKHMRQLRT 179

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198
           L   A+ Q Y+  +     +   ++ +G   +   D  +                 AF F
Sbjct: 180 LVNEAINQGYMHADAYPFRKYKIKQEKGRHEFLIPDELKKLETVEVEEESMRHVLDAFLF 239

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             Y+GLR SD C+   ++                  VE+      L     +G    + +
Sbjct: 240 CCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESRALGSLDRYPD 299

Query: 259 NDKQKMNATQ--FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314
                        +   +  A   G+ K    H  R   AT+    G     +    G  
Sbjct: 300 IGSLAALPCNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLLIHQGVAITTVQKLLGHT 359

Query: 315 TVDQAETYTKGAD 327
           +V   + Y++   
Sbjct: 360 SVKTTQIYSEILS 372


>gi|75812424|ref|YP_320043.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705180|gb|ABA24854.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 343

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 31/281 (11%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------- 128
            +     +LA NSR  +E    + +       Y ++  +H+    E  +           
Sbjct: 49  LEFLRSTNLAPNSRKLYERELKRFLG-WTQLHYHELRPRHLGLYKEYLRDEVKTDSGKPL 107

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + SS    + +++  FKW        +A NP L ++  K      +  T E M++  S  
Sbjct: 108 SKSSINAGVAALKSFFKWMCYTYPDIIATNPTLGIKLEKVPLPPAQSLTDEQMERVWSAL 167

Query: 187 SE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                ++ R  A   +L  GLR  +  +  V      +  +   KT     V L      
Sbjct: 168 ELLGETKQRDTALVHILSHGLRAGEIVQLNVGSFDGKLLFLPDTKTNEPRLVPLRKESRD 227

Query: 244 LLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +L                      +   +    +++        +     AG+ +   H 
Sbjct: 228 VLEAYLRSRREQGEELNSLTPLMISHHASYKGDRLSYHGIYFAVEKIGELAGIEDLHPHQ 287

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT     G          G ++      YT  +++ 
Sbjct: 288 FRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQE 328


>gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
 gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 87/311 (27%), Gaps = 62/311 (19%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
             I E+R+S     LA+ +   +       +   G          H              
Sbjct: 119 DAIQEFRRSMRRAGLAIATERCYVRKLKAFMADRGLNCLADFDRIHACDVEAHLTDLAVD 178

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +PS+  Q   S+   F+  +++E   I    + +     T           +  + F
Sbjct: 179 GNVSPSTQNQAFHSLLKFFELVLKREMGKIEAIRANKDSMAPTV------MSPEEVGQVF 232

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK 243
                   +  + L   G+R S++ R  V+ +        I+  K      V +PD  ++
Sbjct: 233 EGLEGVYLVIAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIE 292

Query: 244 LLAMTPIGKETFFINN-------------------------------------------- 259
            L      ++    ++                                            
Sbjct: 293 PLRRFVKTRDALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGR 352

Query: 260 -DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  + AT F    +    +AG+  + ++H  R   AT     G    ++    G   V
Sbjct: 353 IHRHHLRATTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDV 412

Query: 317 DQAETYTKGAD 327
              E YT   +
Sbjct: 413 KTTEIYTHVRN 423


>gi|89070669|ref|ZP_01157942.1| site-specific recombinase, phage integrase family protein
           [Oceanicola granulosus HTCC2516]
 gi|89043749|gb|EAR49952.1| site-specific recombinase, phage integrase family protein
           [Oceanicola granulosus HTCC2516]
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 101/362 (27%), Gaps = 26/362 (7%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALT-----GSTPKREY 60
           P +    ++ G K     ++ +G   R+ +      +   A            +    + 
Sbjct: 2   PGLVLRISKSGTKTFCLHKRINGTMPRLTIGRYPIMSLAEARERVRQVLYAIETGRFEDI 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                +   TL  +I +Y +      +        E+   +     G     +I    + 
Sbjct: 62  PGIEVETKPTLGDVIPDYIE--KHAKVHNRDWKRKEALLAKFTALHG-RRIDEIKRADVV 118

Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +    + P SA + L  ++ L  W V +  +  +P   ++   ++    R  T +++
Sbjct: 119 KACDVIHSSAPVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERVLTDDEL 178

Query: 180 QQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
               +       P      LL  SG R ++        L                  +  
Sbjct: 179 GALWAASDAEGYPFGDCMKLLILSGQRRAEVAEMQWSELDLERRLWTLPSQRAKNGRQHT 238

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRK 291
                 +     G   F  ++             F     +              H +R+
Sbjct: 239 VPLTDAMLDLLRGVPRFLGSDFVFTTTGRSAVSGFGRLKDRLDRTLPEGTQPWIIHDLRR 298

Query: 292 FSATISADAGATAHELMATYGWKT---VDQAETYT--KGADRIRLGIKNS-RRISSVVDS 345
             +T  A  G       A    KT      A  Y     AD  R  +    R+++  +++
Sbjct: 299 TMSTNMAMMGVPQPVTEALLNHKTGVVSGVAAIYNVYSYADEKRAALDAWSRKLTQQIEA 358

Query: 346 DD 347
            D
Sbjct: 359 LD 360


>gi|319440793|ref|ZP_07989949.1| hypothetical protein CvarD4_03408 [Corynebacterium variabile DSM
           44702]
          Length = 405

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 100/386 (25%), Gaps = 76/386 (19%)

Query: 28  GHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
             GRR R+       ++         +            P+     +   +  +  +   
Sbjct: 30  PDGRRNRIACTSRNRDTAIAKRRAKLMEIEDGTYIPGQKPK-----VSVWMQHWCDTIAH 84

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
            +L      ++ S+    I    G+    K+T   +R      +          +   ++
Sbjct: 85  ENLKPRVLQNYRSFLKVHIRPSIGERRLDKLTVDDVRRLHADIRDKGLSDRMVQEVHATL 144

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFL 199
               K AVR+  +  NPC  ++RP+ + E    +++ + Q   +    +G +    +   
Sbjct: 145 SKCLKDAVREGVLDKNPCDRMDRPRARMEPRGAFSRVEAQAILTTARGDGPKLYSRWLAA 204

Query: 200 LYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGTIITVELPDGFMKLL 245
           L  G R ++        +              +           G  ++          +
Sbjct: 205 LVLGGRQAELLGLEWDRVDLDRGLADLSWQIQRIPWRHGHGCACGDGVSASRCRHREPDV 264

Query: 246 AMTPIGKETFFINNDKQKMNATQFSI---------------------------------- 271
                 +             +    +                                  
Sbjct: 265 PSWMDLRHAHGGIWFTPPKTSASVRVVPLPSPLVDALREWRDVSPATTLGLVWPDESGKP 324

Query: 272 --------WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    +K    +AGV   + H  R    T+  ++G +   +    G  T+     Y
Sbjct: 325 ENPKADGAAWKELCVRAGVRPLTLHSTRHTMVTLLLESGVSPEVIRQLAGHSTILSTRNY 384

Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348
                   LG   +R   +V+    P
Sbjct: 385 MH------LGQDAARDALAVLGGYAP 404


>gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573]
 gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 53/300 (17%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
           +       A  +  ++  +  + I          +  K +   +       + A +  + 
Sbjct: 11  EHMQTRFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  L           ++  +  +R + + +     T+++++          + +L  + 
Sbjct: 71  ALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRCLLDV--VDPKYQLPAKL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------------------TGT 231
           L  SGLR  +  R  VQ +  +  +I+  +                              
Sbjct: 129 LYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY 188

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQK---------------------MNATQFS 270
              +   +     L      K        +                       MN T   
Sbjct: 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +  A +AG+ K+   H +R   AT   + GA    +    G   V   + YT   +R
Sbjct: 249 RTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603]
 gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDAMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 84/350 (24%), Gaps = 67/350 (19%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
                        A         +   P     T+     ++        ++  +   + 
Sbjct: 3   GTTCEELYDKEQEARRQVAEIIFHREHP-----TVAEYCEKWLL-MQSAKVSPATLKGYA 56

Query: 97  SYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVA 154
           S     II+  GD    ++T   IR  +    +   S    +  + + +F  A R + + 
Sbjct: 57  SNMKNYIIKPLGDMYMEEVTADDIRLALIPLSNKSESLHNTVNMLLKCIFYSAERSQLLE 116

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            NPC  +     K    +    +   +      +G  P L     LY+GLR  ++     
Sbjct: 117 YNPCEGISAKGGKPTPKKDSLTDQQVEVLLETVKGLPPYLFTMIGLYAGLRREEALALQW 176

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------------- 259
             +  +  +          +          L      ++                     
Sbjct: 177 DCVFLDAPTPYISVRRAWRSEHNRPVISTTLKTKAARRDIPIPKCLVNCLREAKAASKSE 236

Query: 260 ------DKQKMNATQFSIWFKAKATK---------------------------------- 279
                 + Q ++ +QF   ++    +                                  
Sbjct: 237 YVIADSEGQPLSYSQFKRVWQYIVVRSTKERTYYKYVNGQSIKYTVQPSLGGHQKNNPNI 296

Query: 280 ---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                 + + H +R    T    AG     +    G +        Y + 
Sbjct: 297 VYSLDFDVTPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARV 346


>gi|315162684|gb|EFU06701.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
          Length = 393

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 96/363 (26%), Gaps = 47/363 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSP 64
           P +    T+    +Y  RK    +G +         T   A            R      
Sbjct: 11  PGILSYETKRNGTMYRIRKSVTINGVKTPFDESKFKTLTAAKARLKEIDDLALRNETGIL 70

Query: 65  RKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
             +  T+     +Y        + + ++R+  +S +   I  K G+    ++        
Sbjct: 71  LNRKLTVNDYWEKYANKKVVQKVWSKDTRLGNDSLYKNHIKPKYGNLPLIQLNRNDYELY 130

Query: 123 VESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDM 179
           +          S      +   +   AV    +  N    V     +     +  + ++ 
Sbjct: 131 IVELLKKLRKDSVRSIHIAFMAMLNDAVYCGVIERNRLQRVYIGDAEKPARNKHLSLDEY 190

Query: 180 QQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
             +        ++   +  +L   G+R  + C    + +  N  +               
Sbjct: 191 WSWMDTAKRILTKYEYSCVYLCIYGMRRGEVCGITPKVISQNELTGNLMIHLEDSRTNAT 250

Query: 230 -------------GTIITVELPDGFMKLLAMT---------------PIGKETFFINNDK 261
                         +   + L +   + L                               
Sbjct: 251 SKDGQSKGGVKTAESERYIALDELGTQALNTVLTEAREIKKDFGEILHRDDFILINPRTA 310

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  + TQ + WF   + + G+  + H +R F  T +A AG     + A  G       E 
Sbjct: 311 KPFHPTQLNRWFDRVSKECGIKATPHMLRHFFTTQAAIAGVPKEHVAAYLGHTDKVMTEK 370

Query: 322 YTK 324
           YT 
Sbjct: 371 YTH 373


>gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239]
 gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239]
          Length = 202

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 3/78 (3%)

Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           N +     FK    K  +     H +R   AT   + G     +    G   +      Y
Sbjct: 121 NESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIY 180

Query: 323 TKGA-DRIRLGIKNSRRI 339
           T    D     I     +
Sbjct: 181 THVMKDTKDKAIDKLNFL 198


>gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308


>gi|256848881|ref|ZP_05554315.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256714420|gb|EEU29407.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 370

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/353 (10%), Positives = 95/353 (26%), Gaps = 40/353 (11%)

Query: 16  TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R  K           G+R         T   A            +  N    +      
Sbjct: 6   KRGTKWRAQVSWYDEQGKRCFKVKQGFLTKSAARK--WANEMEVAKDDNQISNQDPIFAD 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
              ++ ++      + N++  ++  +  + +  G     KIT +  +  + S        
Sbjct: 64  YFKDWYETYKIPGKSNNTQNRYKHIYVLLQQNFGKTRISKITRRSYQHFMNSYGKKHVKD 123

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSF 185
           +  +   ++R   K A+ +  V IN    +     +    +       +           
Sbjct: 124 TVYKTNGTIRTCVKDAMSEGLVKINFTERINLTWNEERSRKIEYLNFKEVQKLKKSLLKD 183

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
            +     R     ++Y+G+R  +        +     +I   K+                
Sbjct: 184 ITPSYISRYMLLTIIYTGMRPGEIKVLTWHDIDFKNHTISISKSWDYDNNKIINYDSDDI 243

Query: 231 --------TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG 281
                   +   +++    + +L    +      FI  D    ++   +   + +  K  
Sbjct: 244 NKETKNKSSTRIIKVDQNLLNILDQLKVNHHERLFIGKDGTIPSSNAVNKVLRKQLAKNK 303

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           + K     H +R     +    G   + +    G   +     TY    D ++
Sbjct: 304 IKKDGFHFHSLRHTHVAMLLFKGVDLYSISKRLGHSNMSITANTYAYMLDELK 356


>gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
 gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron
           Recombination [Vibrio cholerae MZO-2]
          Length = 314

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 208 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 267

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 268 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 302


>gi|121606809|ref|YP_984138.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
 gi|120595778|gb|ABM39217.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2]
          Length = 327

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 91/322 (28%), Gaps = 22/322 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R+         +P +      +  ++     +  +++    + T+   +
Sbjct: 5   RKRGNGWQVRVRRLGYPDEVKTFPIKLD-AEQWARSIESDMDRGPFVSRNIAEQTSFGDV 63

Query: 75  ISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
           +  Y K  +         +          +  K   F    +T + +    + R     P
Sbjct: 64  MRRYMKEITPGKRGCLEETI----RLTATLRLKISKFSMVNLTPEVLAEYRDERLKSCQP 119

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDM----QQFKSF 185
           S+ ++ L  +  +   A R+    I   + +  +P       R  ++ D      +    
Sbjct: 120 STVVRDLAVLSSIINHARREWRFPIQNPIEMIRKPTMPPGRDRVLSRTDEVTLLTELLPT 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
                  +      + + +R  +      +H+        +   K G    V L    ++
Sbjct: 180 GRRNPLMQPIVVIAIETAMRRGEILGLRWEHVDLDQQTVFLPITKNGKSRYVPLSKRAVE 239

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
            L       +          M A      F     +  + +   H +R    +  A+   
Sbjct: 240 TLRTVDRSIDGRVFPIGMAAMEAN-----FLKAVRRGNLGDLHFHDLRHTGTSRMANKLP 294

Query: 303 TAHELMATYGWKTVDQAETYTK 324
              EL A  G  ++   + Y  
Sbjct: 295 NVIELAAVTGHTSLQMLKRYYH 316


>gi|261495471|ref|ZP_05991918.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308805|gb|EEY10061.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 351

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 98/337 (29%), Gaps = 31/337 (9%)

Query: 7   LPPFVTKER--TRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +  +    + GK    + +R      I L       FI A    +           
Sbjct: 12  LPENLRPKTVTRKSGKTVIYWLYRTHGKTEISLGTNRNEAFIKAAQLNIERE-------- 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +    T   +   YR          ++  +       ++    D    +IT +HIR  
Sbjct: 64  -SQTARITFGLVAKRYRDEVIPQK-KASTAQTDLCKIKNLLLFFNDAPLEEITPQHIREY 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK TP SA    +    ++++A    Y  +         KR     R    E+    
Sbjct: 122 MTWRKDTPGSANNEFSMFSHIWQYAREWGYTNLP--SPNIGMKRYPIRKREIYVENNIFQ 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +       R   +    +G R  D      +H+ +    I  QKT   + +E+     
Sbjct: 180 MVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVGKLA 239

Query: 243 KLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----------KSAHGVR 290
            ++            F     +K+ A +    F     +A  N               +R
Sbjct: 240 DIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLR 299

Query: 291 -KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            K     +   G          G  +V   +TY + A
Sbjct: 300 AKSGTDKALSLG--EEAARQQLGHTSVQMTKTYIRKA 334


>gi|240141172|ref|YP_002965652.1| putative phage integrase [Methylobacterium extorquens AM1]
 gi|240011149|gb|ACS42375.1| putative phage integrase [Methylobacterium extorquens AM1]
          Length = 389

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 108/390 (27%), Gaps = 67/390 (17%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLP------YPHESTFIPAYMSALTGSTPKREY 60
           LP  V + +  +GK  YY+  G G +           P    F                 
Sbjct: 3   LPSEVRRVKKPNGKCYYYWHPGRGTKREGKAIALGSDPSSPEFWERIR---------GLR 53

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKH 118
           I        ++ W++  YR+S  + S A +++ S+  + ++       G      +  +H
Sbjct: 54  IAGTTAPAGSIAWVVGLYRESEAFRSCAESTQASYAVHLNRFANPEGWGHLPAEALEPRH 113

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +  +S K TP  A Q L     L  WA    ++   P    E         R      
Sbjct: 114 VLALRDSMKETPVMANQMLAVGGTLCSWAAPFGHLGRRPFNPFEVVPGLDIPDRGHVPWP 173

Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +   +   ++G     RL    ++             V      I+    +         
Sbjct: 174 VWAQEYVLAKGPADLVRLVRLGVMTCQRESDLVRMGPVHRDGAAIWCRPVKTRKKRRAFR 233

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK-------------------MNATQFSIWFKAKA 277
           +P      L +     E     N + K                       +    +    
Sbjct: 234 IPLTTTDALLLEQWTGEPILFENTRWKAPIARTHPDLYLFTPRAQAYTPDRIRARWTRWL 293

Query: 278 T-KAGVNK---------------------------SAHGVRKFSATISADAGATAHELMA 309
             +AG                              + HG+R     +   AG    ++  
Sbjct: 294 ETEAGTELCGKWRKWLATQVERYDWDIEPEEARGPTIHGLRGTGVLVRLSAGHDPQQVSN 353

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G  ++   + Y +  D++ +     RR+
Sbjct: 354 DIG-MSLPMVQRYIRFRDQVEVAEAGRRRL 382


>gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
 gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC
           43184]
          Length = 392

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 79/258 (30%), Gaps = 16/258 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142
           +L +++  +  S    + +      +  +T   +      +  +K+  ++  + +  ++ 
Sbjct: 122 NLRLSTLKNHLSTLQVLCQYQPQVSFDDLTFNFLCGFEHFLLEQKYHRNTIAKHMKHLKR 181

Query: 143 LFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFE 197
                  +  +          + K         T E++ + ++   +  +        F 
Sbjct: 182 YVNLAINKDLFELQKYPFRKYKIKYMESKRGHLTPEELGRLENIAPKLQRTLRRTLDMFL 241

Query: 198 FLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
           F  Y+GLR SD       +          ++S         + + L      L       
Sbjct: 242 FSCYTGLRFSDIVNIRPDNFHLIDDKLWLVYSSVKTDVNVRLPLFLLFDGKALAVYERYC 301

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
           K              +  +   K     A ++K  S H  R  +AT+    GA    +  
Sbjct: 302 KRYSRTLFGVSVSANSNVNKQLKRICRLAEIDKRLSFHMARHTNATLLLYNGANITTVQK 361

Query: 310 TYGWKTVDQAETYTKGAD 327
             G K+V   E Y+   D
Sbjct: 362 LLGHKSVRTTEIYSDIMD 379


>gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 71/304 (23%), Gaps = 50/304 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+   R        ++ +  ++  +  + I   G     ++  + + + +       + +
Sbjct: 20  LLDILRTRIRLKHYSLRTEQTYTEWAKRYILFHGKRHPAEMGKEEVEAFLSHLAVKHNVS 79

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
               +  R    +  R+      P L      +K + +         Q       G+   
Sbjct: 80  ASTQSQARAAILFLYREVLDIELPWLDDVEQAKKPQRLPVVLTVSEVQALLSRLTGTHA- 138

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------------- 232
           L    +  +G+R  ++ R  V+ +      I  ++                         
Sbjct: 139 LMGRLMYGTGMRLMETVRLRVKDVDFERSEIIVREGKGAKDRITMLPQAVAAPLREHLGR 198

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NA 266
                                L          +                         + 
Sbjct: 199 VEALHGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAKQLSTDPRTGVTRRHHADE 258

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  +     A +    + H +R   AT    +G     +    G K V     YT 
Sbjct: 259 KGIQRAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTH 318

Query: 325 GADR 328
             +R
Sbjct: 319 VLNR 322


>gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
 gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA
 gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium
           fredii NGR234]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 91/318 (28%), Gaps = 25/318 (7%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVN 90
           R++ P   +   +   ++ L       E I      P+ ++  +  Y +      +L+  
Sbjct: 76  RVQRPKLGDDAALRHLLAFLRSQNAIAEEIE-VDHNPSAVEQHVQAYERHLRDARALSRQ 134

Query: 91  SRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFL--TSMRVLFK 145
           + I++       +      G+    ++    +   V+ +    +     +  T++R    
Sbjct: 135 TIINYRPVVRDFLSFRFGDGEISLAQLRAADVTDFVQKKVSRLNMRRAKIVTTALRSFLS 194

Query: 146 WAVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +A  +  +  +   +V                R      +         G +       L
Sbjct: 195 YARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRDTPIGCRDYAMILAL 254

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
              GLR S+     +  +      I+ +       + LP    + +A           + 
Sbjct: 255 ARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWRARPRNASR 314

Query: 260 DKQ---------KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307
                        +  +      +    + G++   K  H  R   A+     GA+  E+
Sbjct: 315 RVFLRDKAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGGASLGEI 374

Query: 308 MATYGWKTVDQAETYTKG 325
               G + V     Y K 
Sbjct: 375 GEVLGHRHVQTTAIYAKV 392


>gi|57651245|ref|YP_185210.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus COL]
 gi|262052996|ref|ZP_06025174.1| prophage L54a, integrase [Staphylococcus aureus 930918-3]
 gi|57285431|gb|AAW37525.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus COL]
 gi|259159122|gb|EEW44188.1| prophage L54a, integrase [Staphylococcus aureus 930918-3]
          Length = 401

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/398 (11%), Positives = 115/398 (28%), Gaps = 69/398 (17%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K + ++   K  YY +         +R+   L    + +   A          K    +S
Sbjct: 5   KFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSS 64

Query: 64  PRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              K  T   L+ E+ +         V +  + ++    I + S  +    KI TK++++
Sbjct: 65  SELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQT 124

Query: 122 GVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP-------- 164
            +      ++ +   + L  M+         + +       ++      +          
Sbjct: 125 FINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEA 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K           +      +  +   + R+    A E    +G+R  +     V+ +   
Sbjct: 185 KMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLK 244

Query: 221 IFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE--- 253
             +I    T   I      G                           +L    + +    
Sbjct: 245 NKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPS 304

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F       M  ++ +    + A    +NK  + H +R    ++ A+   +   
Sbjct: 305 YVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKA 364

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +M   G        + YT   +  ++  +  +++  +V
Sbjct: 365 IMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 325

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 82/295 (27%), Gaps = 36/295 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHT 129
              Y  S +    +  SR +  S+ + +    G           +   H+ +  E  + T
Sbjct: 34  ARAYLLSLN----SHRSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDT 89

Query: 130 PS---SAIQFLTSMR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +   +L++++          L      Q   A+        P  +          
Sbjct: 90  GRATATVNTYLSALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRAL 149

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVE 236
                      G++       +L  GLR S+         +  +       K        
Sbjct: 150 FAVCEADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAY 209

Query: 237 LPDGFMKLLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           +P G  + L +               +   F +    ++         + +  +AG+   
Sbjct: 210 VPAGAWQRLQIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKC 269

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           S H +R+  AT   D G     +    G  +V   + Y +  ++         R+
Sbjct: 270 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQR--LQDARDRL 322


>gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 104/352 (29%), Gaps = 40/352 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
           F    G RIR      +      +        + +   + + +  +   LIS Y  +   
Sbjct: 19  FDPITGERIRTRPVAST--RKEALELEAKLRREFQEERARKSRSVSFPTLISIYLANCEI 76

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSM 140
                N   + +      I       D +KIT + I    +    T     S    +TS+
Sbjct: 77  -DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSL 135

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199
             +F  AV +E +  NPC +V+R     + ++ W  E+ ++F S   +     +  +   
Sbjct: 136 SKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVA 195

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMK 243
             +GLRC +      + +   +  I   K+ T                   V +    +K
Sbjct: 196 FLTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLK 255

Query: 244 LLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
           LL                    +T+             FS   K     + +     H  
Sbjct: 256 LLESWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDF 315

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRI 339
           R     +    G     +    G  +V    + Y     ++ +        +
Sbjct: 316 RHSHVALLIHQGEDYITIKERLGHGSVKTTIDVYGHLYPNKQKEMADKLDDL 367


>gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 325

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 84/308 (27%), Gaps = 39/308 (12%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVE 124
           +   +  Y +       L+ ++  ++      ++        GD     +    +RS + 
Sbjct: 25  VATALDAYERHLSLERGLSPHTVRAYLGDAVALLVHLAAGTPGDATVESVDLLGLRSWLA 84

Query: 125 SRKHTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           ++    +S             L  WA R   +A +P   +  P+           +    
Sbjct: 85  AQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRTLPVVVRPDQAGA 144

Query: 182 FK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------- 225
                            + R   E L  SG+R ++ C   +  +  +   I+        
Sbjct: 145 ALEAAAAGADQHDPVALRDRAVVELLYASGVRVAELCGLDLDDVDYSQRVIRVLGKGSRE 204

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281
                       V       +   +T       F+     +++                 
Sbjct: 205 RTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTARRVVHDVMGAVPG 264

Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +   HG+R  +AT   + GA    +    G  T+   + YT              R+ 
Sbjct: 265 SADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVT---------VERLK 315

Query: 341 SVVDSDDP 348
           ++ D   P
Sbjct: 316 AIHDRTHP 323


>gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160]
 gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160]
          Length = 416

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 78/280 (27%), Gaps = 28/280 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHI----RSGVE 124
           L   I  + ++     L   +         Q++ +  +     +++T   +         
Sbjct: 123 LAAYID-FLRTE--RGLCEETIEGRRHNVAQLLEQMKERGHSLKQVTLAQLDALLLERYG 179

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183
            R + P +       +R  F+ A  + +        ++ P+       P +       + 
Sbjct: 180 ERHYAPRTIQGHACGLRAFFQHAESRHWCPPGIAQGIQVPRVYRHATLPSSPSWQDVQRL 239

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                       + R     L   GLR  +  R  ++ L     ++    + +  +   P
Sbjct: 240 LNTTEGSRPTDIRDRAILLLLAVYGLRSGEVRRLRLEDLDWEQETLTITHSKSGRSQTYP 299

Query: 239 ----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285
                         ++       +    +    + +N++        +     +      
Sbjct: 300 LSRTAGQAIIRYLKEVRPQCSCREIFLPMRAPLRPLNSSAIFQLVNRRMKALDIPVLHHG 359

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            H +R   AT   + G     +    G ++++    Y K 
Sbjct: 360 PHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKV 399


>gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881]
 gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881]
          Length = 328

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 78/302 (25%), Gaps = 47/302 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHT 129
           L+ ++R        +  +  ++  +  + IR +       +  K I++        R  +
Sbjct: 15  LMDQFRFWLRQNQYSYRTEQTYVLWVVRYIRYNQLRHPSTMGAKEIQAFLSYMSVQRHCS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---------------------- 167
           PS+    L ++   ++  ++Q+Y  +N   S  +P+                        
Sbjct: 75  PSTQKIVLNALNCFYRRFLQQDYGELNFRQSKRKPRIPAVFSEQEAQAVIALLSEPSQLI 134

Query: 168 ---------------TEGIRPWTKEDMQQFKSFWSEGSQPRLA----FEFLLYSGLRCSD 208
                             I+    + M             R       E  L   +  + 
Sbjct: 135 CELLYGAGLRVSEALRIRIKDLDFDRMIITVHQGKGDKDRRTLLPKSCEERLRQQIAIAS 194

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           +     +        +    +           +  +       ++       +   +   
Sbjct: 195 NLYEMDRKNGVGPAWMPHALSRKYSGAGSQRIWQFIFPSKEPARDPETGIIRRHHYHQDN 254

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K  A +A + K    H  R   AT   + G     +    G   V   E Y    
Sbjct: 255 VRKHVKQAAAEAEITKLCGPHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLHVM 314

Query: 327 DR 328
           +R
Sbjct: 315 NR 316


>gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
 gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella
           excrementihominis YIT 11859]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 88/286 (30%), Gaps = 40/286 (13%)

Query: 91  SRISFESY---FDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLTSMR 141
           S+ S+       ++  R  G         K ++              +  +   +L++++
Sbjct: 35  SKDSYRCMKSKLNKFARFFGYKGLVDCDWKSMQPNHVTVFLTAQSWGSARTYNCYLSALK 94

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------QP 192
            +   A R + + ++    ++  K++    R  +   +   +S     S         + 
Sbjct: 95  SVALNAWRNKQIDLDHFQRIKSLKQRRV-FRALSGRAISSEESASLIKSLEANSLRTVRN 153

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG 251
           R  F  +L  GLR ++ C   V+ +     S K         T+  PD  + +L      
Sbjct: 154 RAIFYLMLGCGLRRAEVCELRVKQVSFKNRSAKIIGKGNKERTIYFPDVVLDVLKTWFEF 213

Query: 252 KETFFIN----------------NDKQKMNATQFSIWFKAKATK---AGVNKSAHGVRKF 292
           ++                          ++ +  S   +   T+        + H +R+ 
Sbjct: 214 RQLNKNEIDAGFVFGRIDNKLRLYLDTALDPSSVSRIIEKLVTETENLDSRLTPHDLRRT 273

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
            AT          E+    G  +V     Y +  +  +R   + + 
Sbjct: 274 FATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRKAAEKAE 319


>gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
 gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01]
          Length = 367

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 87/335 (25%), Gaps = 72/335 (21%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK----- 127
           ++ Y K       + N+  ++     +        D ++   T   +   V   K     
Sbjct: 27  VTYYLKYLESVDKSENTLKTYAYCLKRYFMYLELIDKNHNDATFDDLVDFVMWLKSPQRY 86

Query: 128 ------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                        +  +    +T +   + +  R +   ++   SV +   +    + + 
Sbjct: 87  KKVIYKDRLLNSKSARTINLTITVVTNFYDYLFRTKKFNVDIAKSVLKESNRKSSYKSFL 146

Query: 176 KEDMQQFKSFWS--------------------------EGSQPRLAFEFLLYSGLRCSDS 209
                    F +                          +  + +   + L  +GLR  + 
Sbjct: 147 DHVNTNNLLFTNTLKVKEPREKMKILSTSEIKELINASKNLRDKFMIQLLYETGLRIGEL 206

Query: 210 CRAGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLAMT- 248
               +  ++ ++ +                     +       +     D   ++L    
Sbjct: 207 LSLYIDDIKYDLTNGHQIILKTRKNKNGARLKSGERKIYISQSLIDLYDDYLYEVLDEVS 266

Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                        +    ++    +  FK    K G+N   H +R   ATI  +      
Sbjct: 267 TSSEFLFIKIRGKHVGDPLDYNDVNSIFKRLRKKTGINVHPHLLRHTHATIFYNKSKNIK 326

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRI 339
           ++    G   +      Y    D+  L  +N  ++
Sbjct: 327 QVQERLGHSNIQTTMNLYIHNDDQ--LIRENWEKV 359


>gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 27/292 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
            Y           ++  S+           G  +  Y  I  + +              +
Sbjct: 12  AYIAHLREVG-RYSTAKSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRN 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGS 190
           +   ++  +R ++  AV    V+  P L            +     + ++          
Sbjct: 71  TVSTYMRRIRHIYNLAVEAGEVSYIPNLFKGVFTGVESKRKKALPLDCLRSLMGTPRVEP 130

Query: 191 QPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + R           +SG+   D      +++++ + S   QK+G+ I VE+P     LL 
Sbjct: 131 EMRRTQLCFCLMFSFSGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLD 190

Query: 247 MTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGV--NKSAHGVR 290
              +  +                             F+   ++ A   GV    +++ +R
Sbjct: 191 ELAVCTDKDSPYLFPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AT   +       +    G  ++   + Y K     RL   N     SV
Sbjct: 251 HSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++N  Q +   +    +AG+ +  S HG+R   AT   +AGA    +    G   +   +
Sbjct: 254 RLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGADLRSVQELLGHARLSTTQ 313

Query: 321 TYTK 324
            YT 
Sbjct: 314 RYTH 317


>gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 21/271 (7%)

Query: 79  RKSAHWGSLAVNSRISF---ESYF-DQIIRKSGDFDYR--KITTKHIRSG----VESRKH 128
            KS      A  +   +        + I+ +    D    +++ + I       ++ +  
Sbjct: 121 LKSRIGIDRAKGTYPGYYYMRRTLGEFILWQFKTKDIAFGQLSEQFIHDYQNYVMDVKGL 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +   +L  ++ + + A ++ Y       +   P++     R  ++ED ++ +     
Sbjct: 181 AVDTVRHYLAILKKVCRIAYKEGYAERCHFANFTLPQKTERTPRALSREDFEKIRDVEIP 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM- 242
             +      R  F F  Y+G   +D+      +L  +       K             + 
Sbjct: 241 AWRTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDEGCLWLKYRRQKNELRASVKLL 300

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-A 298
            + LA+     +           +        K+ A  AGV+ +   H  R   A++   
Sbjct: 301 PEALALIEKYHDDNRPTLFPMVYHPN-LRRHMKSLAVLAGVSSTLCYHQARHSFASLITL 359

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +AG     +    G   +   + Y +   + 
Sbjct: 360 EAGVPIETISRMLGHSNIQTTQVYARVTPKK 390


>gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98]
 gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98]
          Length = 349

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 100/349 (28%), Gaps = 40/349 (11%)

Query: 11  VTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K+ + + K  +  R        +R                 A +        +N    
Sbjct: 3   VYKDESTN-KWYFSIRYKDVYGNNKRKMQRGFSTK------REAKSAEAIFLNDVNEGYS 55

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
              T  ++   Y ++     L   ++   ++ +      K G     KIT    +   + 
Sbjct: 56  DSKTFDYIFHHYLEN---SDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKY 112

Query: 126 RKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                +S     T          +A +   +  +P +S++   R     + +   +  + 
Sbjct: 113 LIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPK-FMMREEFEE 171

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV-------QHLQNNIFSIKTQKTGTIITV 235
           +    E    R  F  + Y+GLR  ++            + +  N     + +T      
Sbjct: 172 RIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPK 231

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------------KAKATKAGV 282
                 +  L        T     +K+         +F             + K  KA  
Sbjct: 232 TDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFP 291

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           + + H +R   A+  A+ G     L +      + +   TY+    + +
Sbjct: 292 HYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKK 340


>gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 311

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 70/290 (24%), Gaps = 25/290 (8%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           L   ++ Y +       L+ ++   +      ++      G      +    +RS +   
Sbjct: 16  LAEALAGYEEHLRTQRDLSEHTVRGYVGDAVWLLDHLVRRGGTRVDDLDLATLRSWLAQG 75

Query: 127 KHTPSSAIQFLTSMR---VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           +   +                 W  R    A +  L +  PK +         +  +   
Sbjct: 76  RTRGAGRATTARRAAAARSFTGWLRRAGLTAEDVGLRLVSPKAQRTLPDVLAPDQARVVV 135

Query: 184 SF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                     G +  +  E L  SG+R S+     V  +      ++   K     +V  
Sbjct: 136 ESAAGAEEPVGLRDAVVLELLYASGIRVSELVGLDVDDVDRGRRLLRVLGKGRKERSVPY 195

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------------KAGVNKS 285
                + L                                                 +  
Sbjct: 196 GVPAERALDAWLTRGRPALATERSGPALLLGLRGGRLDAREVRRTVHAAVAAAPGAPDIG 255

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
            HG+R  +AT   + GA    +    G  ++   + YT         +  
Sbjct: 256 PHGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVERLRAVHA 305


>gi|227487382|ref|ZP_03917698.1| phage integrase family protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092606|gb|EEI27918.1| phage integrase family protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 433

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 110/382 (28%), Gaps = 57/382 (14%)

Query: 11  VTKERTRHGKII-YYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTP--------KREY 60
           + K   R G      +R+   G   + P   +S    A   A+             + E 
Sbjct: 28  IKKRSYRSGTYFDVRYRRPDNGEWEKYPERFDSRG-EALARAVFIRKEIDAGDWVSREEK 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
               ++   TL      Y        ++  +   +   +D ++    G+    KIT+  I
Sbjct: 87  EAREKQNQVTLNSFFEHYL---EVHIVSKITERGYRISWDSRVHDSIGNLPVVKITSDDI 143

Query: 120 RSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            +       T  +A       + +  +F  A  +  +  +PC      +R     R    
Sbjct: 144 TAWYREMVATHDTAPFNAATYSLVSWVFNLAYEEHIINRSPCEVKNAGRRPQAADRTIPT 203

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------- 217
            +              +LA     Y  LR  +      + +                   
Sbjct: 204 VEELNSLI-EHLPKHYKLAVRVAAYGALRIGEWTTLQRRDVLVTPGAPGELPDVTLWVRR 262

Query: 218 ----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                           + +  +    +    +   L    ++ L           I  + 
Sbjct: 263 GKKENVGQHKVEGKPSRYSGETKTKNQRKVSLPQWLGVELIEHLETMKDKNPQAIIFPNV 322

Query: 262 QK--MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +   ++    +   K    KAG+ + S+H +R F  T+ A AG T  ++ A  G  ++  
Sbjct: 323 RGGIISTDTCNNVIKRATKKAGLQHMSSHVLRHFGGTMFARAGGTVADIQARLGHSSIRA 382

Query: 319 AETYTKGADRIRLGIKNSRRIS 340
           A TY   ++     + N     
Sbjct: 383 AMTYQHASEERDRALANRMSFE 404


>gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 335

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 80/300 (26%), Gaps = 37/300 (12%)

Query: 74  LISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG- 122
           LI+ + +         + +S  ++   F  +   +              +I    + +  
Sbjct: 7   LITRFMREHMPQQRGYSPHSCEAYAYSFRLLFVFAAGRLHTRPSLLHLEQIDADMVLAFL 66

Query: 123 ---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTK 176
                 R +  S+    L +++   ++   +   A+     +     K       R  T 
Sbjct: 67  HHIEHDRGNGASTRNLRLAAIKAFMRYVELRHPNALEQIAQINAIPGKRHDHKLIRHLTM 126

Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           ++++            G + R         GLR S+     ++++               
Sbjct: 127 DEVRAVLDAPDIKTRLGLRDRAMLHLCFAGGLRVSELVGLTLENVTLQPSPSILVFGKGR 186

Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKA----- 280
               LP        +               F+N     M    F    +  A  A     
Sbjct: 187 RERSLPLWKETARDVRAWLAVRGKPPVTELFVNAQGMAMTRAGFEYILEKHAKAAAARCP 246

Query: 281 ---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNS 336
              G   S H +R   A +   A     ++    G   +   E Y +     +L  I+  
Sbjct: 247 TLIGRPLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIEAV 306


>gi|153809551|ref|ZP_01962219.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
 gi|149127796|gb|EDM19020.1| hypothetical protein BACCAC_03869 [Bacteroides caccae ATCC 43185]
          Length = 443

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 84/297 (28%), Gaps = 22/297 (7%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG--- 107
           +   R       +   T+  L +E+          + A ++   + +    +        
Sbjct: 95  AEEVRNVFQGQAETQDTIMKLYAEHNSDYALRVGVNRAASTFYQYRNTCRILGEFLKERY 154

Query: 108 ---DFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D   +++    I +     + T    P + +  +  ++ +   AV +  +  +P   
Sbjct: 155 HVSDMPVKQLDENFIEAFDMYMRTTRRFMPRTILGHINRLKSVMMLAVFRGIIPFSPFKG 214

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHL 217
              P++        T++++ +F +   +       R  F F  ++G+   D       +L
Sbjct: 215 Y-APQKPVFKQMYLTEDELDRFANTTYDTPNRNFTRDMFLFSCWTGICYCDMRSLTAANL 273

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                      T    T       +    L +    K           +     +   K 
Sbjct: 274 VRADDGSLWIHTERQKTGTPECVRLMEIPLKIVEKYKGMDSNGKLLPMLTKESMNRHLKK 333

Query: 276 KATKAGV--NKSAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            +   G+    S H  R    +I     G     +    G + +   + Y K     
Sbjct: 334 MSVMCGINRPISFHQARHTFGSIICLSQGIPIETVSKIMGHRHITTTQRYAKVTQDK 390


>gi|94972344|ref|YP_595564.1| integrase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731881|emb|CAJ53924.1| Integrase [Lawsonia intracellularis PHE/MN1-00]
          Length = 359

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/345 (10%), Positives = 85/345 (24%), Gaps = 30/345 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRK----KPT 69
           ++++      +       +R      + F   A+ S +       +    P++    +P 
Sbjct: 9   KSKNAISYQVYWNNPYTGLREAKTFPTLFEASAFESLIKHRLKYEKTFFKPKENTTLEPV 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126
           TL   +  Y +   +                 I+   GD    ++ T             
Sbjct: 69  TLYDAVLCYLQKKKFT---PQYTKIISCSLQSILTSYGDVKLSELKTDFFVHLKNYLETK 125

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   + S     L+ +R +  WA  Q  + + P + +  P         + +    
Sbjct: 126 TKKNGECFSRSYIHIQLSRLRTILNWAYEQGMLVMLPKMKLGDPYYTRTIPPTFDEITRL 185

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239
              S         L   F L  G   S+        +      ++   +           
Sbjct: 186 IAVSPPHLVRIIILGAAFGLRVG--PSELFSLTWDKIDLKSGVVRISTSKKNPRFPWREV 243

Query: 240 GFMKLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291
                L                      +          +      AG+ +    + +R 
Sbjct: 244 PIKDELKPFFSTWFEEDTKNGLSYVITYKGKPIRSIHSSWSKALKNAGITRRIRPYDLRH 303

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGIK 334
             A+    +G     +       + +    Y +  +  + +  I+
Sbjct: 304 SFASELISSGVDVGTVAQLLNHSSPNMLFKYYQYVETKQKKRAIE 348


>gi|94991427|ref|YP_599527.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
 gi|94544935|gb|ABF34983.1| DNA integration/recombination/inversion protein [Streptococcus
           pyogenes MGAS10270]
          Length = 421

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 103/384 (26%), Gaps = 70/384 (18%)

Query: 28  GHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
             G+++   +            + A      +  +         TL+ L   + +S    
Sbjct: 37  KTGKQVTTTITAKTLKQLDREVIQARL-DFERNGFTRKEVISIATLEDLAEAWFQSYQTW 95

Query: 86  SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQ- 135
             + N+      Y  + II K GD+   KI + +I+  +                 A + 
Sbjct: 96  VSSHNTLNRVRGYLDNYIIPKFGDYKPDKIESANIQLWLNDLAKKSKKSIESGVKRANKG 155

Query: 136 -------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KEDM 179
                   +  ++ +F + +    +  NP  +V+ P +     +              + 
Sbjct: 156 SAKDFGAVIHKLKDIFDYGITNYGLTANPVSTVKVPPKPKSNKQRIMVLHDDSLAMWLNY 215

Query: 180 QQFKSFWSEGSQPRLAFEFLLY-------------------------------------S 202
            +         + +L    LL                                      +
Sbjct: 216 LENLDNSRANRRFKLICNTLLASALRINELLALTIDDLNFEESSISVNKTLLWKTANKKT 275

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           G +    C+A  +    N            +     +    L        +  F      
Sbjct: 276 GTKGEVVCKATPKTDAGNRSIPVPLSILEELQDFHNEMNKYLKLHNRPETKLIFPTIYGN 335

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320
            M         K +    G+     H  R   A++  +AG    EL    G K++     
Sbjct: 336 YMCDRNERTTLKQRLAGLGLPDYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMD 395

Query: 321 TYTKGADRIRL-GIK-NSRRISSV 342
           TY + A + +L  +     +++ +
Sbjct: 396 TYAELAPQRKLEAVDIYLDKLAEL 419


>gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6]
 gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6]
          Length = 348

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 93/318 (29%), Gaps = 54/318 (16%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKHT 129
           I ++        + +  +   +    +Q+ +         + + +        +    ++
Sbjct: 20  IDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVELKDLEQFS-GGWLHRAGYS 78

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
            +S    + ++R  + +  ++  VA NP   +  PK      R    +  +         
Sbjct: 79  AASRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELT 138

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDG 240
              G +       L+  G R +  C      L    +    +              +P  
Sbjct: 139 SLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVP 198

Query: 241 FMKLL---------------------------AMTPIGKETFFINNDKQKMNATQFSIWF 273
              +L                            +       +    + ++++        
Sbjct: 199 LEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRMI 258

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K  A  AGV      AH +R    T  A++ ++  ++ A  G      +E YT  +    
Sbjct: 259 KKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHIS---- 314

Query: 331 LGIKNSRRISSVVDSDDP 348
                 R++++V+D  +P
Sbjct: 315 -----MRKMTNVLDKGNP 327


>gi|295090295|emb|CBK76402.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 393

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 107/337 (31%), Gaps = 37/337 (10%)

Query: 18  HGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G   +     +    G++I+      ST   A            E +   +K+P + K 
Sbjct: 11  NGTYYFRANLGYDSVTGKQIQKYRSGFSTKKEARTEYSRLVLAAEEGLAMEKKQP-SFKQ 69

Query: 74  LISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
            I E Y        +  ++  +  +  ++  +        +I   H+++        ++P
Sbjct: 70  YIEEIYLPWYK-TQVKESTYKNRLNTIEKHFKFFYRKKVAEIEPIHVQAWQLKLAKEYSP 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +        + + F  A+     + NP   V   K K   I  WT ++ Q+  S   +G 
Sbjct: 129 NYVRIIQGMLSLAFDRAIILGLASKNPSRMVGNIKSKKVKIDFWTLDEFQKVISLLYKGD 188

Query: 191 QP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKT 229
                L   F L   +GLR  ++       +                       ++ + +
Sbjct: 189 YYEHYLFICFWLLFTTGLRIGEAAALQWDDIDFESGIISVTKTLYYKSMTEYKFVEPKTS 248

Query: 230 GTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
            ++ TV L D  ++ L      +        F ++ +    +        +  A  AGV+
Sbjct: 249 ASVRTVVLDDDTIRELKEWKEVQKKVLKDCNFVLSYNGIPTSKHTLPRALEKLAGLAGVH 308

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   H +R     +    G     +    G + +   
Sbjct: 309 RIKIHALRHSHVALLISMGVNPLIIKDRLGHEKIQTT 345


>gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1]
 gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1]
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 36/309 (11%)

Query: 75  ISEYRKSA--HWGSLAVNSRISF--------ESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           ++ Y +       +++ ++  ++            D++ R+  D +   +    I + ++
Sbjct: 8   LTAYLREHLPRERAVSPHTVKTYANCFVLLVRFAADRLKRRPTDLEVEDLGIDLILAFLD 67

Query: 125 S----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRP 173
                R  +  +    L ++R  F++   +  V ++  L V     K           R 
Sbjct: 68  HIEAQRGSSVRTRNGRLAAIRSFFRYIEYRVPVCLDQALRVRSIPSKKTDKALIDYLDRA 127

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
             K  +         G++ R         GLR S+     ++   +   S          
Sbjct: 128 EIKALLDAPDPRTRLGTRDRAMLHLAYAGGLRVSELVTLQLRDFPDRSLSTVHIMGKGRR 187

Query: 234 ------TVELPDGFMKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKA------ 280
                   E        LA+ P  +      N + Q M    F+         A      
Sbjct: 188 ERVLPLWKETQFALRAWLAIRPDAEVAEIFLNANGQPMTRDGFAFRLAEHVKTAAEKQPS 247

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             G   + H +R   A  +  A     ++    G  ++   E Y +     +L I  +  
Sbjct: 248 ILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQILAAHG 307

Query: 339 ISSVVDSDD 347
             ++     
Sbjct: 308 APAIKPGRF 316


>gi|257417023|ref|ZP_05594017.1| phage integrase [Enterococcus faecalis AR01/DG]
 gi|257158851|gb|EEU88811.1| phage integrase [Enterococcus faecalis ARO1/DG]
          Length = 393

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 109/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKIDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----- 222
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINN 259
                          +   +I  +   +    +L    + +               F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQHEALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHISDE--VTKEATDAFSSYVN 392


>gi|253991035|ref|YP_003042391.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782485|emb|CAQ85649.1| Phage integrase [Photorhabdus asymbiotica]
          Length = 387

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 102/358 (28%), Gaps = 58/358 (16%)

Query: 17  RHGKIIYYFRKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R+           G+RI+  L    +      +           +  + P     T +  
Sbjct: 6   RNKTWYADITIPGGKRIKQSLGTEDKRQAKELHDKLRADLWRVDKLGDYP---DVTFEEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---- 130
              + +          S    +S     +        + IT + I S V   ++      
Sbjct: 63  CIRWLEDKSDKK----SIDKDKSMIAFWLIHFSGMIIKNITAEKIYSAVAKMENRKHLEN 118

Query: 131 -------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                    ++    L  ++ L + A  +E+  I+    ++  +
Sbjct: 119 WQSKCEANKRKGKDMPVYVPKPAAKATKGLHLALIKSLLR-AAEREWKWIDRAPIIKTSQ 177

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----I 221
            K   IR     + ++      E    +    F L +GLR S+      Q +        
Sbjct: 178 PKNGRIRWLEHHEAKRLIDECHE--PLKSIVRFALATGLRRSNIINLEWQQIDMQRKVAW 235

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
              +  K+G  I V L D   ++L         +   + K  +                 
Sbjct: 236 IYPEDSKSGKAIGVALNDTACQVLRNQIGNHHKWVFVHKKSAIRNDGTKTPAVRKMRVDD 295

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  + +   ++G+     H +R   A+    +G     L    GW++++    Y   A
Sbjct: 296 NTAWNSALKRSGIENFRFHDLRHTWASWLVQSGVPLSILQEMGGWESIEMVRRYAHLA 353


>gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
          Length = 310

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 27/292 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
            Y           ++  S+           G  +  Y  I  + +              +
Sbjct: 12  AYIAHLREVG-RYSTAKSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRN 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGS 190
           +   ++  +R ++  AV    V+  P L            +     + ++          
Sbjct: 71  TVSTYMRRIRHIYNLAVEAGEVSYIPNLFKGVFTGVESKRKKALPLDCLRSLMGTPRVEP 130

Query: 191 QPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + R           +SG+   D      +++++ + S   QK+G+ I VE+P     LL 
Sbjct: 131 EMRRTQLCFCLMFSFSGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLD 190

Query: 247 MTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGV--NKSAHGVR 290
              +  +                             F+   ++ A   GV    +++ +R
Sbjct: 191 ELAVCTDKDSPYLFPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AT   +       +    G  ++   + Y K     RL   N     SV
Sbjct: 251 HSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|289192574|ref|YP_003458515.1| integrase family protein [Methanocaldococcus sp. FS406-22]
 gi|288939024|gb|ADC69779.1| integrase family protein [Methanocaldococcus sp. FS406-22]
          Length = 326

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 30/299 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGV--- 123
           +K  +  +R+   +  +  ++  S        +                   +R      
Sbjct: 27  IKKWVDRFREEREFDGIKESTIRSDILRLRVFLDFVYNRLNKTPETMTNADFVRFFNYLE 86

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-------INPCLSVERPKRKTEGIRPWTK 176
           + RK + SS  ++   ++V ++      +                E              
Sbjct: 87  KERKVSRSSQDKYFKLLKVFYRLMRLNNFREFAEESKERRRFSKFEVKHYDAIDANALNL 146

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIIT 234
              +  +S      +  L    L  +G R S+      +    +  + +    KT     
Sbjct: 147 ILEKMMESNSRMSIRNCLIVRLLWDTGARISEVLNLKYKDCDFDEGTFRITNTKTHEERV 206

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAG----VNK 284
           V      ++ L            ++         +++       FK    +      + K
Sbjct: 207 VVCSSDTLEALRWYVQFNPRQNSDDYIFQTPKGERVSKDTIYKVFKRAVDELKKEGKIPK 266

Query: 285 S----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +     H +R   A    D G     +    G +++D    Y+   +R    +K  +++
Sbjct: 267 NKRIVLHSLRHGRAVDLLDKGVPIDIVKEYLGHRSLDTTLYYSHSKERALKMLKTIKKL 325


>gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B]
 gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3]
 gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B]
 gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3]
          Length = 392

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 15/264 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQ 135
           R+     +L  ++  +  S    +     D  ++ I    +         +++  ++  +
Sbjct: 112 REEILHSNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEYFLLKQEYHRNTIAK 171

Query: 136 FLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +  ++        ++ +          + K +       T E++ + ++   +G +   
Sbjct: 172 HMKHLKRYINLAINKELFELHKYPFRKYKIKYQESKRTHLTPEELGRLENLKLDGQRTLR 231

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
                F F  Y+GLR SD      ++      +  +     +   ++          K L
Sbjct: 232 RCLDMFLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSVKTDVSVRLPLFLLFEGKSL 291

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +    K            + +  +   +  +  A ++K  S H  R  +AT+    GA 
Sbjct: 292 PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASIDKKVSFHTARHTNATLLLYNGAN 351

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G K+V   E Y+   D
Sbjct: 352 ITTVQKLLGHKSVRTTEIYSNIMD 375


>gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 318

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 94/291 (32%), Gaps = 24/291 (8%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRK 113
            + + S  + P  +   +  Y         LA  +R +      Q++RK    G     K
Sbjct: 10  AQQVRSSAEIPDPIADELHRYDDHLRDVRGLAAGTRRNHCRIVAQLLRKKFAGGVVTIAK 69

Query: 114 ITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-- 168
           ++   +R  +  +     + S+A Q  T++R   ++        +    ++  P +    
Sbjct: 70  LSAADVRRFIARQLGDSPSHSAAAQVATALRSYLRYRTVCGDSVVRLSAAISSPVQWKLA 129

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
              R    +++Q+  +    G +PR         L  GLR  +     +  +     ++ 
Sbjct: 130 SLPRALKPDEVQRLLAALPYGRKPRRGYAIVRCALDMGLRAGEIANLSIDAIDWREGTVT 189

Query: 226 TQKTGTIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
            + T +     LP               + LA            +    +         +
Sbjct: 190 LKGTKSRRQDILPLPMATGQALADYLQHERLANPSRALFLCRRESRDIPITTYAVENVIR 249

Query: 275 AKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +AG+  S +H +R   A      G++  E+      ++++    Y K
Sbjct: 250 RACRRAGLPDSGSHLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAK 300


>gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii
           M21/2]
          Length = 498

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 97/335 (28%), Gaps = 53/335 (15%)

Query: 41  STFIPAYMSALT----GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96
                A   A+       +P +E        P      I+++ K      + + +  S+E
Sbjct: 143 KELTDALQYAVDNNWLKVSPIKEVDPCLDNSPVLFTDFITDWLKMMKSR-VEITTYTSYE 201

Query: 97  SYFDQ-IIRKSGDFDYR----KITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAV 148
                 I+       Y     +   K+I+   +       +A     +  ++R   ++A 
Sbjct: 202 RAIVHKIVPYFEPLHYTLQDMEQHPKYIQDFYQHELDRGLTANTVIHYHANIRKCLQYAF 261

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +   +  NP   VERP+++      ++ E+++Q                   Y GLR S+
Sbjct: 262 QIGMIRSNPADRVERPRKEKFKSEIYSGEELEQLFKVIQGDPSEFGVIMAAFY-GLRRSE 320

Query: 209 SCRAGVQHLQNNIFSIKTQKTG---------------------TIITVELPDGFMKLLA- 246
                   +      I  Q T                      +  T+ L     ++L  
Sbjct: 321 IVGLKWDAVDFENKKISIQHTVVTAKVNGTVTEIARDKTKTKSSCRTLPLIPACEQMLNK 380

Query: 247 ---------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290
                                +  +++   +++     S  F        + +   H +R
Sbjct: 381 MKKEQEQNRKVCGRSYCTDYLDYIYVDPMGKRIRPDFLSQHFPDFLVAHQMKRIRFHDLR 440

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
              A++    G +  E+    G   +      YT 
Sbjct: 441 HSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 475


>gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 100/309 (32%), Gaps = 26/309 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISF---ESYF-DQIIRKS 106
           +T  +E +    +   TL   +  + +         +A +S  ++     Y  + I ++ 
Sbjct: 93  ATAVKELLQGSVETQITLLKRLDMHIEDMRSRIGIDVAKSSMSTYIYTRRYLGEFIQKRF 152

Query: 107 GDFDYR------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D         I  +     ++ +     +A  +L  ++ + + A ++ +      ++
Sbjct: 153 KTSDVAFGQLNEHIPWEFQDYILKDKGLAVDTARHYLAILKKICRMAFKEGHAEKRYFVN 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQ 215
            + P+   +  R  ++ED ++ +       +      R  F F  Y+G+  +D+      
Sbjct: 213 FKLPQENRKPPRALSREDFEKIRDVVIPPERITHNIARDLFLFACYTGVPYADAVSITRD 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++  +       K        L    +  + +++    +            +        
Sbjct: 273 NIYKDDKGDLWLKYLRKKNEYLARVKLLPEAISLIEKYRSDDRKELFPMIHHPN-MRRHM 331

Query: 274 KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K     AG+  +   H  R    ++   +AG     +    G   +   + Y + + +  
Sbjct: 332 KGLRDLAGISCDLVYHMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKK- 390

Query: 331 LGIKNSRRI 339
              ++  + 
Sbjct: 391 -LFEDMDKF 398


>gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 316

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 80/268 (29%), Gaps = 28/268 (10%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
             +R ++       +  +              H+ +     E R  + ++  + L ++  
Sbjct: 38  PRTRRAYRIDLRDFMSFTAITRPEDFRIVARAHVLAWRKVLEDRALSGATIRRKLAALSS 97

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAF 196
           LF++   +  V  NP    +RPK ++   +     D Q             +G + R   
Sbjct: 98  LFEYLCEKNAVDFNPVKGAKRPKVESNEGKTPALGDHQARALLDAPDPATLKGKRDRALL 157

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAMT----- 248
             LLY GLR  + C+  V+ +             K   +  + L  G  + +        
Sbjct: 158 SVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKGNKLRYLPLHAGSAERIHAYLEVAG 217

Query: 249 -----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300
                               + A        A A  A +       H +R  +AT + + 
Sbjct: 218 HGETPHAPLFQPARRKTHAALTADGVYKIVLAYAAGAQIEVQGFGVHSLRATAATNALEH 277

Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328
            A   ++    G   +     Y +   R
Sbjct: 278 EADIAKVQEWLGHANIATTRIYDRRKSR 305


>gi|227534133|ref|ZP_03964182.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188240|gb|EEI68307.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 387

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/362 (9%), Positives = 105/362 (29%), Gaps = 46/362 (12%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KK 67
           P V + +T+ GK  +  R+ +   +        +    +  A          +       
Sbjct: 11  PGVYEYQTKKGK-RFGVRRTYDDAMGERKEFSKSGFIHWQDADIEIKQFEAKLARGEVSG 69

Query: 68  PTTLKWLISEYRKSAHWGSLA-----VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
             + +  + +Y +      +       ++  + ++++   +    G    + ++    + 
Sbjct: 70  SLSHRMTVDQYYQQMAKRKMKMGIWRESTARANKNFYSKYLKPAFGKTPLQDVSRAKYQR 129

Query: 122 GVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            ++    +    ++       M+ +   A  ++ +  N    ++   +            
Sbjct: 130 FLDELSQSGLALTTVHTIDAVMKSIMNAAEFEDVIDKNRLRGMQINGKAPRNKDLEPHSF 189

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------- 224
                +      +  +A       GLR  +      + ++ +   I              
Sbjct: 190 ELWLNAAKITMDKYEMALIITATLGLRRGEVMGLRNESIKISHDQINDADVAQISIDMQR 249

Query: 225 --------KTQKTGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQK 263
                     +   +  T+      +  L                   K   ++NND   
Sbjct: 250 NTNELNGAPLKTKSSYRTIWAFGKTVDYLKYAMVTANNLRQRNHIQAEKHWLWLNNDGNP 309

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++ T  +   +  + ++G+    H +R + AT +  A     ++M   G K +     YT
Sbjct: 310 LHPTHLNRLMRRVSNESGIEVYPHLLRHYFATQAIAANKPQIDVMHYLGHKNLQMTADYT 369

Query: 324 KG 325
           + 
Sbjct: 370 RS 371


>gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
 gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697]
          Length = 385

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 21/306 (6%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
             E   +  +      S    +   + ++  ++    IS +R+     SL  +++ +  S
Sbjct: 74  TIEKKELELWQQGKRISLELLKNALTTQENNSSF---ISFFRQEVMNSSLKDSTKRNHLS 130

Query: 98  YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW----AVRQEYV 153
               +     +  +  +T + I S     +            M+ L +       ++   
Sbjct: 131 TLMLLQEFKKNITFSDLTFELISSFEYFLQLKGYHTNTIAKHMKHLKRHVNIAINKEYIE 190

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSD 208
                    + K           E++++ ++    G   +L     AF F  Y+G+R SD
Sbjct: 191 IQKYAFRKYKIKTIENKHTHLVPEELERLENLILSGRYVKLQKSLDAFLFCCYAGMRYSD 250

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQK 263
                 ++  +             +           L  +        K    + +    
Sbjct: 251 FINLSSENFVDINQET--WLIYKSVKTGTEVRLPLYLLFSGKGIAILNKYRDNLEDFFHL 308

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            + +  +         AG++K  S H  R  +AT+    G     +    G K+V   + 
Sbjct: 309 RDNSNVNKDLIIITRLAGLSKRISFHTARHTNATLLIYNGINITTVQKLLGHKSVKTTQV 368

Query: 322 YTKGAD 327
           YT   D
Sbjct: 369 YTNVMD 374


>gi|323152607|gb|EFZ38884.1| integrase [Escherichia coli EPECa14]
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 103/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPKNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGV 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688]
 gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688]
          Length = 338

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/322 (10%), Positives = 86/322 (26%), Gaps = 10/322 (3%)

Query: 15  RTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             R+G    +  K  G ++R      +          ++    +  +I+  +    TL  
Sbjct: 3   VLRNGIWQIHLMKPDGSKLRQSSKTADKVLAQKLHDKISTELWEGRWIDRNQSGNMTLDA 62

Query: 74  LISEYRKSAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HT 129
              +          +  +   ++  +   +    G     +IT   +   +   +   +T
Sbjct: 63  AFDKVMAQRWEKQRSWFSVIHNYNRFKKYLK---GSTKLSEITRSRLWEVIGEMREDEYT 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  + +  +  + K A     V             +         E++   + F  +G
Sbjct: 120 DGTINRSMAVISTILKTARDDWEVIEKIPKVPLLKVGRGRMRWLKDDEELPFLEWFRKQG 179

Query: 190 SQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM 247
               +   E LL +G R S+  R     +  N                +    +   + +
Sbjct: 180 DHDMVDLIEVLLETGCRVSEILRLKDTDVHINERRLYLGITKSGEEEYQPLSEYALQIFL 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                         +    ++F    +            H +R   A+    +G     +
Sbjct: 240 RRYKIGVPPFEGVSRWGALSRFQTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRV 299

Query: 308 MATYGWKTVDQAETYTKGADRI 329
                 K ++    Y K +   
Sbjct: 300 QEYMRHKDINTTLIYAKLSSEE 321


>gi|257091080|ref|ZP_05585441.1| predicted protein [Enterococcus faecalis CH188]
 gi|312904393|ref|ZP_07763554.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999892|gb|EEU86412.1| predicted protein [Enterococcus faecalis CH188]
 gi|310632292|gb|EFQ15575.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
          Length = 393

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 108/388 (27%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----- 222
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTP------------IGKETFFINN 259
                          +   +I  +   +    +L                   +  F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
 gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80]
          Length = 348

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 97/319 (30%), Gaps = 52/319 (16%)

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT--KHIRSGVESRKH 128
            LI ++        + +  +   +     Q+ +   G+F   ++ T  +     +    +
Sbjct: 18  DLIDQFLTWKGENENCSARTVKKYRGLLSQLDKFLSGNFAAAELKTLEQFSGGWLHRAGY 77

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + +S    + ++R  + +  ++  VA NP   +  P+      R    +  +      + 
Sbjct: 78  SAASRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPRMGRRLPRFMGLKSAEALLFQPNL 137

Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------II 233
               G +       L+  G R +  C      L    +    +                +
Sbjct: 138 TSLSGVRDSAMLALLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTLEKGERERLVPV 197

Query: 234 TVELPDGFMKLLAMT---------------------PIGKETFFINNDKQKMNATQFSIW 272
            +E        L                              +    + ++++       
Sbjct: 198 PLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRM 257

Query: 273 FKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  A  AGV +    AH +R    T  A++ ++  ++ A  G      +E Y+  +   
Sbjct: 258 IKKYAIAAGVPEDQSHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHIS--- 314

Query: 330 RLGIKNSRRISSVVDSDDP 348
                  R+++ V+D  +P
Sbjct: 315 ------MRKMTHVLDKGNP 327


>gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7]
 gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13]
 gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19]
 gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13]
 gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19]
          Length = 392

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 15/264 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQ 135
           R+     +L  ++  +  S    +     D  ++ I    +         +++  ++  +
Sbjct: 112 REEILHSNLKESTLKNHLSTLHVLSLYKKDVLFKDINFNFLCDFEYFLLKQEYHRNTIAK 171

Query: 136 FLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +  ++        ++ +          + K +       T E++ + ++   +G +   
Sbjct: 172 HMKHLKRYINLAINKELFELHKYPFRKYKIKYQESKRTHLTPEELGRLENLKLDGQRTLR 231

Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLL 245
                F F  Y+GLR SD      ++      +  +     +   ++          K L
Sbjct: 232 RCLDMFLFSCYTGLRFSDIVSITKENFLIIDDKVWLVYSSVKTDVSVRLPLFLLFEGKSL 291

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
            +    K            + +  +   +  +  A ++K  S H  R  +AT+    GA 
Sbjct: 292 PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASIDKKVSFHTARHTNATLLLYNGAN 351

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G K+V   E Y+   D
Sbjct: 352 ITTVQKLLGHKSVRTTEIYSNIMD 375


>gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3]
 gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3]
          Length = 349

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 94/334 (28%), Gaps = 37/334 (11%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK +   Y     GRRIR  + +      A+       +  + ++     +   L 
Sbjct: 5   KQKNGKWLCELYPNGREGRRIR-RHFNTKGEAEAFELYTKNESGDKPWLGKKEDRRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTKHIR------- 120
            +I  +        +A  SR++          D I  +    D+     K +R       
Sbjct: 63  EIIQLWHNLHGQALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGY 122

Query: 121 -SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
               E     P +  +    +  +F    R  E+   NP   +   K   + +   T E 
Sbjct: 123 HKNPEKWIAKPITVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLTLEQ 182

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + Q      +     L    E  L +G R S++ R     L     +    K     TV 
Sbjct: 183 IPQLLLACHQYGHEDLTQIVEICLATGARWSEAERLTRPQLSPYKLTFTKTKGKKNRTVP 242

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKF 292
           +     + L+                          FK       +  +     H +R  
Sbjct: 243 ITKWLYEKLSTRQGRMFKPCYQE-------------FKKMLLLTDIELTEGQKTHVLRHT 289

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                   G     L    G   + +   Y+  A
Sbjct: 290 FGAHFMMNGGNILVLQKILGHANIRETMKYSHFA 323


>gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
 gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301]
          Length = 308

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 67/212 (31%), Gaps = 10/212 (4%)

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +   +  R ++ ++  + + ++  L + A +   +   P    ++ +        + +E 
Sbjct: 89  VIGSLRERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFVRQKERVGRIRFLEYEEEK 148

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                         RL   FL+ +G R  ++       +Q+   +    K+    TV L 
Sbjct: 149 RLFAAIKSRCEDSYRL-SLFLVDTGCRLGEAIGVTWNDVQDQRVTFWLTKSNRSRTVPLT 207

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294
               K   +     +  F   ++ +     F   +     + G+        H +R   A
Sbjct: 208 RRARKAAHIPHEKLKGPFSMLNQVR-----FRQIWNEAKMEVGLGTDDQVVPHILRHTCA 262

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     G     +    G +T+     Y   A
Sbjct: 263 SRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|213692228|ref|YP_002322814.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523689|gb|ACJ52436.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 454

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 99/379 (26%), Gaps = 60/379 (15%)

Query: 18  HGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +G+   +         G R R       T   A  +A   +    E I     +P T+  
Sbjct: 76  NGRYRAFVELSPNPADGSRRRTSATG-HTRTEALNNARAKARRIEEDITL-VDEPPTVNE 133

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES------- 125
            +  +         A N+  S+    +  I    G     ++   HIR            
Sbjct: 134 WMRRWIDEIVTPRRAPNTTRSYRFRIEHDITPVIGAVRMDRLKPAHIRLVERHCLEGNPA 193

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  +P++A    T +    K AV +  +  NP  +VE+ +     I   T       
Sbjct: 194 KGIQGKSPATAALTHTVLSEACKAAVAEGIIRSNPVDAVEKNRVPPAPIATLT-PGQAAM 252

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------------QN 219
                   +  + +  L  + LR  ++       +                         
Sbjct: 253 LIHAETDPRWSIIWRLLFITALREGEALGVTRNEIVRSDGLPCLLVEWQLKEFDGITDMP 312

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--------------- 264
             F  +     T +T        +L+ +                                
Sbjct: 313 AGFEARRLDGRTWLTRPKTRSGRRLIPLPADLAADLAAYTADHPDIDPDTPLFRSGRGNP 372

Query: 265 -NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                    ++    + G+ +   H  R  +AT  A  G +     A  G   +      
Sbjct: 373 IRKETLQNAWRKALERVGLPRVRVHSARHTAATAMARIGVSDLARRAIIGHADIGTTNAI 432

Query: 322 YTKG-ADRIRLGIKNSRRI 339
           YT   AD +   I    R+
Sbjct: 433 YTHVDADMLAGAIDGVERL 451


>gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116]
 gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116]
          Length = 318

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 84/304 (27%), Gaps = 55/304 (18%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
           ++       A  +  ++  +  + I         K+    +   +         A++   
Sbjct: 10  KEHMISRHYAKKTIETYLFWIKRYIVFHQLTHPSKLCEDDVERFLSHLAIDEKVAVKTQA 69

Query: 139 -SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +         + ++  +  ++   + +     T+++++  +       + +L  +
Sbjct: 70  LALNAISFLYREYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVR--RFVQHIDPKYKLHIQ 127

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------K 228
            L  SGLR  +  R  +Q +  +  +++                                
Sbjct: 128 LLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTLAKELHEPLKAQVNLTRDY 187

Query: 229 TGTIITVELP-------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                 +                        +  L   T +  +       +  +N +  
Sbjct: 188 YQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLSIDADTGEFRRHHVNESAI 247

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KG 325
               K  A  AG+ K  + H +R   AT   + GA    +    G   V   + YT    
Sbjct: 248 QRAVKRAAKDAGIEKSVTCHTLRHSFATHLLETGADIRTVQEQLGHTDVKTTQIYTAVHH 307

Query: 326 ADRI 329
            +  
Sbjct: 308 VNHK 311


>gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
 gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli
           RM2228]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 34/291 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L+  I  Y K     S + N+ + +     + +  S D         I T  + + +   
Sbjct: 12  LERWIEAYLKHIQALSYSNNTFLLYRRILLEFVEYSLDYQDEMQINDIKTTFLVNFLNYL 71

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------- 170
           ++        +  + I +L  +   F +              +++ + +TE         
Sbjct: 72  ENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTEKSEEKLNYL 131

Query: 171 -----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                IR     + ++ K       +  L  + +LY GLR S++    +   +     I 
Sbjct: 132 NENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEIL 191

Query: 226 TQ--------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                     +    I  E  D  ++         +     +  + +N +   +      
Sbjct: 192 KISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIY 251

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            KA +  K  H +R   A      G     +        ++    Y K  +
Sbjct: 252 AKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATN 302


>gi|254516521|ref|ZP_05128580.1| phage integrase family protein [gamma proteobacterium NOR5-3]
 gi|219674944|gb|EED31311.1| phage integrase family protein [gamma proteobacterium NOR5-3]
          Length = 399

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 77/302 (25%), Gaps = 33/302 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110
                  + I     K  T K    ++ +         +   + E      +I   G   
Sbjct: 67  ARFADHDKQIEQRSAKTPTFKAFADQWMEENRI-GWKPSYINTLEHSLSKHVIPAFGSVP 125

Query: 111 YRKITTKHIRSGVESRKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              I+ + I +        P                +  +R + + A  +     NP   
Sbjct: 126 MSAISKEDILAFRNQLARIPRKDGSVGLSAARINTVMVPLRQVMREASERFG-FDNPYQG 184

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           ++  K     + P+T ++++       E            ++G+R  +      +++   
Sbjct: 185 IKLLKVPRTKVEPFTLDEVKAVLDGVREDFHAY--MTVRFFTGMRTGEIHGLKWKYIDFK 242

Query: 221 IFSIKTQKTG------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
              I  +++             +   + + D     L           +           
Sbjct: 243 QRMILVRESYVAGAMTDTKTEESARDIPMSDEVYAALKEQHKRTGKLDLVFCSGSGEPLS 302

Query: 269 FSIWFKA----KATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +   K           + K   +  R  +AT+   AG     +    G        + Y
Sbjct: 303 INNVCKRVWYPLLALLKIPKRPPYQTRHTAATLWLAAGENPLWVAQMLGHSDSAITHKRY 362

Query: 323 TK 324
            +
Sbjct: 363 AR 364


>gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           + EY         + N+ IS+ +  +Q ++         +T+  IR  ++          
Sbjct: 2   LHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPAEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV    +  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVEHHKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLLH 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMTKKKPHVAQSPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|261226303|ref|ZP_05940584.1| site-specific recombinase [Escherichia coli O157:H7 str. FRIK2000]
          Length = 394

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 105/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 23  QKIKIRKMTISRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 79

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 80  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIACVEWGTCRMNPVEMVRKPKISSG 139

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 140 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 199

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M PI       +       ++ F   ++    +  +    
Sbjct: 200 TKNGAPRDVPLSRKARSYLQMLPIQLNGNIFSY-----TSSGFKSAWRTALQELKIENLH 254

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 255 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 314

Query: 344 D 344
            
Sbjct: 315 A 315


>gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 398

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 104/371 (28%), Gaps = 57/371 (15%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGS 86
           G  RR     P       A   A    +       +       ++ L+  Y  S    G 
Sbjct: 27  GGNRRPYRSLPGAGCEDEARQQAREWLSGLLRVRGAS--ASGLVRDLVRAYVASREGAGD 84

Query: 87  LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQF 136
           +AV++  ++ +   + +    G  D  ++   H+     +             P+  +  
Sbjct: 85  IAVSTAKTYRTICRRYVEPYIGHMDASEVRPHHLEELYGTLLDDGAIRGGGIAPAKVLGV 144

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----------MQQFKSFW 186
              +   F W V Q + A NP  S  +P+      R  T+ +               S  
Sbjct: 145 HWFLSAAFDWMVAQGFCASNPAASASKPRPARAEARALTEGEISILAAELEARMADGSRD 204

Query: 187 SEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKTQKTGTIITV 235
           ++G + R    A    L +G+RC ++C      +         +   +            
Sbjct: 205 ADGIRRRTVAFAAWLALNTGVRCGEACALSRSDVSLPLGDLYVHCTMTEPAGGPPARSRA 264

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQ-------------------KMNATQFSIWFKAK 276
           +       +L      +        +                     M  +  S  F A 
Sbjct: 265 KTASSVRHVLMGPSAAQAAAEHIAWQDSWLPAARRDAPLLCAPDGSWMRPSAVSRGFSAL 324

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD-RIRLG 332
             + G+ +    H +R   AT     G   +E+    G   V    E Y        R  
Sbjct: 325 RDEVGLPRDTHFHTLRHTHATHLLREGVPMNEVSRRLGHSKVALTLEWYGHVLPGEDRAA 384

Query: 333 IKNSRRISSVV 343
            +   R+S  V
Sbjct: 385 AEAFERVSRRV 395


>gi|167855415|ref|ZP_02478181.1| phage integrase family protein [Haemophilus parasuis 29755]
 gi|167853481|gb|EDS24729.1| phage integrase family protein [Haemophilus parasuis 29755]
          Length = 351

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 92/323 (28%), Gaps = 21/323 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R  +G         +G+RI R            Y   L       + + + R      +
Sbjct: 5   RRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLKQEMWAEDKLETKR--KYIFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESR 126
             +  Y +SA    L    + + + + +  + K    +   +T + I       +     
Sbjct: 63  DALLHYVRSAE--ELKD--KATKKRHAEYWLSKFAGRELSSLTAQEIILNIPKKNANTKD 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+  +++ S+  +   A +   +   P +  +    +      W  +   +     
Sbjct: 119 PLSHSTQNKYVKSLLRVLNIAHKLGMLDSVPYVQKKE---EPPIRVRWITKQQAKQLIDK 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
                 +   +F L +G R ++        +                    ++ L    +
Sbjct: 176 LSSDWMKSICKFALMTGARRTEILTITWDKIDFERKVAIVTNDVAKSGKARSLLLNQEAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           KLL         +                 F     K  + +   H +R   A+    AG
Sbjct: 236 KLLESIRNRHSKYVFVGRNGNPLQDINRKAFNLATKKCLLTDFHFHDLRHTWASWHVQAG 295

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    GW+T++  + Y  
Sbjct: 296 TPLFTLKELGGWETLEMVKKYAH 318


>gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19]
 gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22]
 gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3]
 gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis]
 gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC
           43184]
 gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC
           43183]
 gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136]
 gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM
           17393]
 gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855]
 gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697]
 gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19]
 gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22]
 gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3]
 gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
 gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A]
 gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 411

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|239904730|ref|YP_002951468.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239794593|dbj|BAH73582.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 374

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 99/360 (27%), Gaps = 48/360 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKREYINSP---------- 64
           R G+ + Y+ +   RR +     ++    A  + +A+  +    + +  P          
Sbjct: 6   RDGRWLVYWNENGKRRDKSFGSGDNGKYQAEVFDAAVKNAKANNQTVPDPSLVQTYQAPV 65

Query: 65  -----------------RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
                                 T   L  +Y +            ++  +          
Sbjct: 66  INVSQISYEPVIPVAVVETGSITFGKLAQKYLEHLSASGKTEKHILTIANLLKTCFFNLL 125

Query: 108 DFD--YRKITT-----KHIRSGV--ESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAI 155
           D +     +T        I+      +    P    +  ++   +  +F + +  E    
Sbjct: 126 DKNKCVDNMTYVNDILPFIKHFQGVSNITGKPRSQITVNRYCDYVDAIFNFGIENELSKT 185

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           NP    +R  ++         EDM++         +  +   F L +    S+       
Sbjct: 186 NPMSKRKR-SKERPRDVQLNIEDMKKIMDKAEPHLKWAMEVCFNLGTRPGESELLSLKWS 244

Query: 216 HLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++     ++    T T    TV +   F++ L        + +I               F
Sbjct: 245 NVDFTKATVHIYATKTKTFRTVPIKVSFLEKLKAMREYSTSEYIVEYNGHQ-IKSLKGSF 303

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +     AG+      + +R   AT      A    +    G  TV     TY    +  +
Sbjct: 304 RTACELAGINYPVRMYDLRHLFATTLLSNNADLAAVSKLMGHATVKMTADTYYHYLEGEK 363


>gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 85/288 (29%), Gaps = 20/288 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            ++      G  + ++   +E+ +  +           D  ++++T   I       +  
Sbjct: 122 EDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVN 181

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   ++  +  + + A+ +  +  NP  +      + +      +E     +  
Sbjct: 182 KSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGYLLREEVETLLQYH 241

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S    R  F F  ++G    D  +    HLQ+     K        +    +  + 
Sbjct: 242 PKSASVELVRDLFVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLL 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +A   I K       +      +  +     K       +      S H  R    T+ 
Sbjct: 302 DIAEKIIEKYEGTTRTEALFPTPSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G     +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 362 LTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 280

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 77/265 (29%), Gaps = 12/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           + E+R        A  +   +              +  +I    + +  E     +  +S
Sbjct: 10  LQEFRNQLKAEEKAQATIEKYMRDVSAFFAY--AKEGSEIDKYTVIAYKEYLTGHYAAAS 67

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    K A+      +      +   R  E      +       +   +  + 
Sbjct: 68  VNSMLAAVNSFLK-AMGWHECTVKALKIQKEAFRARERDLTKGEYFRLLDAAKKKKNLRL 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPI 250
               + L  +G+R S+     V  LQ    ++ ++     +     L     K +    I
Sbjct: 127 YWIMQVLCATGIRVSELRYITVDALQTGCATVSSKGKQRTVLLPAPLCRKLRKYIVCQKI 186

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
              + F+    + ++ +      KA   +AG+       H +R   A            L
Sbjct: 187 TGNSIFVTRSGKPVDRSNICHDMKALCGEAGICREKVFPHNLRHLFAVTYYKMKKDLSHL 246

Query: 308 MATYGWKTVDQAETYT--KGADRIR 330
               G  +++    YT     ++ R
Sbjct: 247 ADLLGHASINTTRIYTLASSEEQKR 271


>gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617]
          Length = 351

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125
            TL+ L   +         +  +   +       +      G     +++   + +    
Sbjct: 19  QTLRRLAESWLAHLAAAGRSARTVQGYGERVRAFLAWCELRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             L+++R+L +W +++ ++  NP   +E PK +         
Sbjct: 79  LQSYRRADGRRLAVNGQRHLLSAIRMLLRWLLKRHHILYNPAELLELPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  +G+R ++     +  +       +++  K 
Sbjct: 139 EEETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------NATQFSIWFKAKAT 278
           G    V +    +  LA                             + T  ++  +A   
Sbjct: 199 GKDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRE 258

Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            A + K+   H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|260855764|ref|YP_003229655.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754413|dbj|BAI25915.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 102/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPKNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGV 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           K G +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KKGMMIAIPLSLSLPVAGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|209552450|ref|YP_002284365.1| putative integrase [Pseudomonas phage PAJU2]
 gi|209528723|dbj|BAG75015.1| putative integrase [Pseudomonas phage PAJU2]
          Length = 281

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 95/275 (34%), Gaps = 14/275 (5%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116
           +  ++++     TTL   + +Y +         +           +          +IT 
Sbjct: 3   RSRFVDTRAAMRTTLGKALEQYEREISEHKKGAS--QERGRIRRWLAHPLAAKGLGEITP 60

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKT-EG 170
             +    +SR     + S+    L  +  L+  A ++  +    NPC ++  PK      
Sbjct: 61  SDLAEYRDSRLKDGASSSTVRLDLAIISHLYTIAAKEWRLEGLTNPCKNLRMPKGSRARE 120

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            RP T E  + +        +  +  E    + +R S+      + +++ +  ++  K G
Sbjct: 121 RRPTTLELRKIYAEAAKLHPELPVIIELAADTAMRRSELLLLRREQIRDKVAVLEDTKNG 180

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
               V L     +LL   P   +    +           S +F      AGV   + H +
Sbjct: 181 ERRMVPLSSRARELLKSLPARIDGKVFSLA-----PNTVSNYFPKACESAGVSGLTFHDL 235

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R  + +   + G +  E+ A  G KT+   + YT 
Sbjct: 236 RHEATSRLFERGFSMMEVAAITGHKTLAMLKRYTH 270


>gi|229181765|ref|ZP_04309077.1| Integrase [Bacillus cereus 172560W]
 gi|228601703|gb|EEK59212.1| Integrase [Bacillus cereus 172560W]
          Length = 267

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 83/267 (31%), Gaps = 39/267 (14%)

Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            I+S     K       +       +R +FK AV  E +  N    V++P+ +   ++ W
Sbjct: 1   MIQSYYAELKEKGLSNGTISNIHRCLRCIFKHAVEWEIIHENIMNKVKKPREEQGEMKTW 60

Query: 175 TKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------ 221
           + E+  +F  +  E   +  + F   +Y+G+R  +      + +  +             
Sbjct: 61  SSEECNRFLQYLKEKNIKYHIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKT 120

Query: 222 -------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                               S    +            F +           F  N    
Sbjct: 121 EKGLFKAATKTKSSNRSISISSFVIRKLQSYYSYKKKEFFRWGIHLDEEAYIFTGNTIHS 180

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
            ++      +     TKAGV +   H +R   AT+   AG     +    G  ++    +
Sbjct: 181 PLHIDAPHRFLNDHYTKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLD 240

Query: 321 TYTKGADRIRLGIKNSRRISSVVDSDD 347
            Y+       +  + +    S++ S++
Sbjct: 241 KYSHITQN--MQQQAAENFESIIKSNE 265


>gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19]
 gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3]
 gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492]
 gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19]
 gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3]
          Length = 411

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 94/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + +++ +  +           D   +++T   I          
Sbjct: 118 EDYAKQVEAGMKAKGTLLKYKTVYKHLQEFLNIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      N +        +     +A A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKQIIDKYRGLCENGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|315442147|ref|YP_004075026.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
 gi|315260450|gb|ADT97191.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1]
          Length = 395

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 108/402 (26%), Gaps = 71/402 (17%)

Query: 4   SLRLPPFVTKER--TRH-GKIIYYFRKG---------HGRRIRLPYPHESTFIPAYMSAL 51
             +LPP + K     R  GK +  +R             R+    +          ++ L
Sbjct: 3   RQQLPPQIKKVDILDRSTGKTVVRYRVKVDVGAHPETGKRQQAKRHCRTEQEARKVLAEL 62

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
                   Y++  +    T++ + + Y       +L  +S          +  + G    
Sbjct: 63  QNKAVTGTYVSPSK---VTVEQVCANYIA--GRHNLRESSLSKLAYDLAPLRERHGKLPA 117

Query: 112 RKITTKHI--------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +++T  HI                G   R  +P +  + + ++  +   A+ Q+ V  N 
Sbjct: 118 QRLTKAHIDQLVTDLVAGGTKTAKGRTRRAWSPVAVNKVIATIDQVLDDALDQKIVTFNV 177

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              V R     + +  +T  ++ Q +  +++          L   GLR  +        +
Sbjct: 178 AAKVARVSSAQKDVDTFTTTEVDQLRKQFAKDRIGHAWELALY--GLRRGEIAGLRWADV 235

Query: 218 QNNIFS----------------IKTQKTGTIIT--------------VELPDGFMKLLAM 247
                +                   +   +                  +        L  
Sbjct: 236 DLQDKTLAIANNRVSAGGATVENDPKSHASRRELPLPARLVTVLRAAKKRQAAERLALGE 295

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306
                E    N   +  N    S ++      AGV     HG R  +AT+    G     
Sbjct: 296 HYGSGEYVVSNEIGEPYNPAVLSRYWADAVKAAGVRHIKLHGGRHTAATLMHLDGVPVAV 355

Query: 307 LMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           + A  G          Y    D         +     +D  +
Sbjct: 356 IAAWIGHSDPTLTLRVYAHSQD------DALKAAGRSLDRPN 391


>gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
 gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855]
          Length = 411

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYR--KITTKHIRSG 122
            T++  I E  ++      +  +   +++   ++        G  D    ++T + IR+ 
Sbjct: 112 GTMREGIKE-METLAGIDYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAF 170

Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               K        + ++++   +     A+ +E++  NP    +  ++        T ++
Sbjct: 171 DIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWIRKNPFYGYKM-EQDETDPVFLTYDE 229

Query: 179 MQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R  F F  ++GL  SD      ++L  +       + G +   
Sbjct: 230 LQTVMKKKFTIPRLELVRDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLE 289

Query: 236 ELPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                            + +L                  M   + + + K  A   G+ K
Sbjct: 290 HRRKASSISNIPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKMNSYLKEIADFCGIKK 349

Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RI 339
             + H  R    T           ++    G  +    + Y +  +  ++  + N + R+
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERL 409

Query: 340 SS 341
           + 
Sbjct: 410 AQ 411


>gi|254361499|ref|ZP_04977638.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|153093013|gb|EDN74034.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
          Length = 351

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 98/337 (29%), Gaps = 31/337 (9%)

Query: 7   LPPFVTKER--TRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +  +    + GK    + +R      I L       FI A    +           
Sbjct: 12  LPENLRPKTVTRKSGKTVIYWLYRTHGKTEISLGTNRNEAFIKAAQLNIERE-------- 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             +    T   +   YR          ++  +       ++    D    +IT +HIR  
Sbjct: 64  -SQTARITFGLVAKRYRDEVIPQK-KASTAQTDLCKIKNLLLFFNDAPLEEITPQHIREY 121

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +  RK TP SA    +    ++++A    Y  +         KR     R    E+    
Sbjct: 122 MIWRKDTPGSANNEFSMFSHIWQYAREWGYTNLP--SPNIGMKRYPIRKREIYVENNIFQ 179

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             +       R   +    +G R  D      +H+ +    I  QKT   + +E+     
Sbjct: 180 MVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVGKLA 239

Query: 243 KLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----------KSAHGVR 290
            ++            F     +K+ A +    F     +A  N               +R
Sbjct: 240 DIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLR 299

Query: 291 -KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            K     +   G          G  +V   +TY + A
Sbjct: 300 AKSGTDKALSLG--EEAARQQLGHTSVQMTKTYIRKA 334


>gi|119488694|ref|ZP_01621703.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
 gi|119455117|gb|EAW36258.1| tyrosine recombinase XerC [Lyngbya sp. PCC 8106]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 98/301 (32%), Gaps = 29/301 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           TL  L +E+ +      LA ++R S+E+    ++   G      I+ + I   ++S +H 
Sbjct: 3   TLAQLATEFLERP---GLAKSTRRSYETALIPLLTFHGRKPVEIISRQVICDYLQSLEHL 59

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--------VERPKRKTEGIRPWTKEDMQ 180
           + ++  +    ++ LF + V   Y+  NP            +      E IR      + 
Sbjct: 60  SINTHHRHQAIIQSLFNYGVAFGYLKSNPIAGLARRKPLLEKGEHGTDEVIRYLNHLQLV 119

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239
           +     S+  +       L  +G R  +     ++ +           K          +
Sbjct: 120 ELYKVVSQDVRLHAIVRLLHRTGARIGEVLALDLEQVDTIVRKFQVVGKGNKQRWCFYSE 179

Query: 240 GFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287
              ++L                        +  +++  +    +     ++ V      H
Sbjct: 180 DAAQVLDKYIKYYRDTGSTALFTARNPFTQEVTRLSDRRVDSNWCDLTAQSFVLKGARLH 239

Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDS 345
            +R   AT     G  +  EL A  G + +     Y K    R  +  + + +I +  +S
Sbjct: 240 DLRHTFATE--RVGLMSIEELRALMGHEKIQTTLRYQKVTSLRAEVVAQKALKILTSAES 297

Query: 346 D 346
           +
Sbjct: 298 E 298


>gi|315154155|gb|EFT98171.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0031]
          Length = 393

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 109/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKLEKNTKRKFYTKDELEHF 186

Query: 188 EGSQPRLAFEFL--------------------LYSGLRCSDSCRAGVQHLQNNIF----- 222
             +   +A +                       ++G+R  ++       +          
Sbjct: 187 LNTADSIAHQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTP------------IGKETFFINN 259
                          +   +I  +   +    +L                   +  F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18]
 gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18]
          Length = 409

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   + S    + +         D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGIDIKEGAIHGYHSTRIHLQKFIQRKYKVTDLAFSQLTENFIYEFGQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+     T ++ + + A R+    +      +  K      +   KE + 
Sbjct: 173 YFLGECGFQESTFYNAATHLKTVCRLAYREGLADVLLFDKAKISKGDKRLPKALDKEALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKALNFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RHK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     +    + I  KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIRLMEKLHSDGRETLLPCIKYKNYQICLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQK 390


>gi|29374816|ref|NP_813968.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29342274|gb|AAO80040.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|315579391|gb|EFU91582.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 388

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 106/347 (30%), Gaps = 44/347 (12%)

Query: 11  VTKERTRHGKIIYY----FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V  ++ + GK  +     F +  G+R+   R  +        AY   +     +    NS
Sbjct: 2   VKFKKDKRGKYYFTASLGFDEVTGKRVQKMRSGFSTIKEAREAYAEIINNFGKEAYSSNS 61

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                     +   Y K    G +   +  +  S              + I   HI+   
Sbjct: 62  TMLYEEFFYTIFLPYYK----GRVKERTYNNRLSMIKNTFAYFFKMKLKSIAPVHIQKWQ 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQE----YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                       ++ ++  LF+ ++ +      ++ NP   V   K+  + I  WTKE+ 
Sbjct: 118 NELLEQYE--NTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKSKKEIDFWTKEEF 175

Query: 180 QQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIK---------- 225
           ++    +      +      ++    +G+R  ++     + +  +   +           
Sbjct: 176 EKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRRYLTVKKSLYYKNA 235

Query: 226 -------TQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWF 273
                   +   +I T+ L +  +  L      ++      F ++ +             
Sbjct: 236 QTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSYNSVPTQKHTVRHII 295

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K  A  A V +   H +R   A++    G  A  +    G + V   
Sbjct: 296 KRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQTT 342


>gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.]
          Length = 417

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 91/303 (30%), Gaps = 30/303 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK---SG 107
           +   +       ++  TL  L+  Y        L   +  ++   E Y  + ++    + 
Sbjct: 93  AQAIKARYLGEDEQHKTLLQLV-SYHNKNMVSVLKPGTLKNYFTTERYIKRYLKHKLKTN 151

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQ-----------FLTSMRVLFKWAVRQEYVAIN 156
           D   ++++ K I    +  ++   S  +            L  ++ +   A+R E++  +
Sbjct: 152 DVFLKQLSYKFIIDFEQFLRN-GKSINRSQPLKNNGVMKHLERLKKMMNLALRLEWIEKD 210

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           P +     K         ++ +++  +S         + R  F F  Y+GL   D     
Sbjct: 211 PFVRF-SLKFTKHQRAFLSQSELEVLESGQLSKGIHQKTRDVFVFACYTGLSYIDVKLLS 269

Query: 214 VQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
             H+      + +    ++                +                   +  + 
Sbjct: 270 DDHIVRGIDGDYWIFTKREKNDEAVKIPLLDKALYILKKYDQGTENKSEKLLPVFSNQKI 329

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGA 326
           + + K  A    +NK  + H  R   AT      G     +    G   +   + Y +  
Sbjct: 330 NKYLKEVAAILKINKKLTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVI 389

Query: 327 DRI 329
           ++ 
Sbjct: 390 EQK 392


>gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223]
 gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223]
          Length = 320

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   +R
Sbjct: 274 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308


>gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
          Length = 406

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSITKHYARVLDQ 388


>gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 332

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 78/309 (25%), Gaps = 38/309 (12%)

Query: 66  KKPTTLKWLISEYRKSA--HWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKIT 115
               T   L+  +           + ++  S+   F         Q+ + +       + 
Sbjct: 2   SAAPTFPALLEAFFTDRLIRQRQASPHTLASYRDTFCLLLAYAQRQLRKGASHVTLPDLD 61

Query: 116 TKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           T  + + ++     R ++  S    L ++   F++              V     K    
Sbjct: 62  TAFLGAFLDHLERDRDNSARSRNVRLAAIHSFFRYVALHAPEHSALAQRVLAIPSKRYVR 121

Query: 172 R---PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R     T  ++    +        G + R      + +GLR ++      + +     + 
Sbjct: 122 RPVAFLTSIEVAALLAAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAAY 181

Query: 225 KTQKTGTI-------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
              +               +      L        +  F       ++            
Sbjct: 182 VQCQGKGRKLRNTPLRKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKHL 241

Query: 278 TKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A  +         + H +R   A      G     +    G ++V+    Y +    +
Sbjct: 242 AVARRDCPSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQA--DM 299

Query: 330 RLGIKNSRR 338
           +L  +   R
Sbjct: 300 KLKEQALAR 308


>gi|110632556|ref|YP_672764.1| phage integrase [Mesorhizobium sp. BNC1]
 gi|110283540|gb|ABG61599.1| phage integrase [Chelativorans sp. BNC1]
          Length = 333

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 85/323 (26%), Gaps = 33/323 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G++ +Y     GRR+          I   ++    +   +  ++ P     T    ++
Sbjct: 7   KRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGP-ASVLTFAHAVT 65

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAI 134
            Y  +                +   ++    +   + IT   IR  +     K +PS+  
Sbjct: 66  LYLDAGKSD-----------RFLVPVLEHWKETLVKDITAGAIRLAAIKVYPKASPSTRN 114

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189
           +         ++      V  +       P  +        K+   +    W        
Sbjct: 115 R---------QFITPTVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLAFEKEA 165

Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                    F   +G R S       + +          KT       +       L + 
Sbjct: 166 PPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPH--LVVR 223

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307
                T          +       +KA   +AG+   + H +R   AT    AG     +
Sbjct: 224 LANLTTDRGGKVFGYSSRHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTV 283

Query: 308 MATYGWKTVDQA-ETYTKGADRI 329
               GW++     + Y       
Sbjct: 284 AWLGGWESPQIVIDIYGHAMKDR 306


>gi|311693594|gb|ADP96467.1| phage integrase [marine bacterium HP15]
          Length = 288

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 76/264 (28%), Gaps = 16/264 (6%)

Query: 97  SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYV 153
                +    G     ++ +  ++  +++R+   +   +  + L   R + +        
Sbjct: 2   QDLKSLDPHIGKLPLNQVHSGTLQKFIDARRKEGAKSGTVNRSLAVARRILRLCAELWRD 61

Query: 154 AINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                     P        +   P      +Q + F       +   EF +++G R S+ 
Sbjct: 62  EYGMTWLETAPMIPDVDWKDSRDPAPVTWAEQGRLFQELPEHLKDMAEFAVHTGCRESEI 121

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGKETFFINNDKQK 263
           C    +   +             +T    D         + +     GK    +     +
Sbjct: 122 CALKWEWEVSLPDKGFGFILPASVTKNGCDRLVVLNATARAVVNRQRGKHEHQVFTFSSR 181

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             A+ F+  ++    KAG+ +   H +R         AG          G K       Y
Sbjct: 182 PVASIFNNAWRKGRKKAGLTHVRGHDLRHTFGRRLRAAGVNEETRAELLGHKRGSVTTHY 241

Query: 323 TKGADRIRLGIKNSRRISSVVDSD 346
           +  A+   L +K    I+     D
Sbjct: 242 S-AAEVAEL-VKAVELIAEKRGPD 263


>gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 385

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 94/373 (25%), Gaps = 65/373 (17%)

Query: 11  VTKERTRHGKI-----------IYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           + + +   GK+           IY +R     G+R  +             +A       
Sbjct: 1   MERRKDSKGKVLKDGESQRKDGIYQYRWTDKTGKRHTIYAKDLKVLREKENNA----NKI 56

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKI-- 114
                       T    +  Y +     S+  +S  ++ +  +++     G+     +  
Sbjct: 57  ISQGIDFEGGKITTYQFLIRYYEFKK-TSIKKSSLKTYYTTTNKLKDTSIGNTKIIDVKI 115

Query: 115 -TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGI 171
              K +   +       S+     T ++  FK A   + +          E  K  T+  
Sbjct: 116 SDAKQLIIDLSQNGLKYSTIKTIKTLIKAAFKMAQEDDLILKNPFDFQLNEVIKNDTKKR 175

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              T++       F       R  +    FL  +G+R S+ C   +  +      +   K
Sbjct: 176 VALTEQQYSDLLEFVLCDRVFRKYYDDIVFLYETGIRVSEFCGLTLSDIDFVKHEVVIDK 235

Query: 229 T---------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----- 262
                                    ++ E       ++   P   E              
Sbjct: 236 QLIKTSKGELYITDPKSKAGFRTIPLSAEAYHAIKAIINRRPQTNEMMVDGYCGFISIHS 295

Query: 263 ---KMNATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATY 311
                 A       +  A             N + H +R    T    +G     +    
Sbjct: 296 NGTPKTAWNIEYELREIAKAYNSLYPECQLPNLTPHVLRHTFCTRKVSSGMNIKAVQYLM 355

Query: 312 GWKTVD-QAETYT 323
           G  +V    + YT
Sbjct: 356 GHSSVQITLDVYT 368


>gi|116071373|ref|ZP_01468642.1| possible integrase/recombinase [Synechococcus sp. BL107]
 gi|116066778|gb|EAU72535.1| possible integrase/recombinase [Synechococcus sp. BL107]
          Length = 323

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 73/278 (26%), Gaps = 30/278 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH- 128
           L+  + K          ++  +       +R           R++    +   V   +  
Sbjct: 33  LLKRFLKQCSRTGSKE-TQDGYRRELRHFVRWRDRNHPHLHLRELDPALVDDWVSLLREQ 91

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  P S  + ++++  L++WA      A++       P+R         K   +  
Sbjct: 92  VAIGSLKPRSFNRRVSAVSALYRWASELTRSAVSGVPRNPIPRRTGMSAPKLAKPLAESD 151

Query: 183 KSFW------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +              +  ++  +        G R S+ CR   + ++        +  G
Sbjct: 152 LTSVLGVISAAKVKGSAIAARDYVMVRGSYLLGCRVSELCRLRWEDIEPLDEGGNVRLLG 211

Query: 231 TI------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                             + L     G   F  N     +     +        +  V  
Sbjct: 212 KGSKPRTIRVSTETLELFESLGRGEPGDWLFPSNKRNGPLTRQAVAARMAMWGREVNVRL 271

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + H  R   AT +   G     L AT G  +      Y
Sbjct: 272 TPHRCRHTHATFAIRRGVDVFTLSATLGRSSTGTTSHY 309


>gi|302876394|ref|YP_003845027.1| integrase family protein [Clostridium cellulovorans 743B]
 gi|302579251|gb|ADL53263.1| integrase family protein [Clostridium cellulovorans 743B]
          Length = 361

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 112/357 (31%), Gaps = 35/357 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---- 66
           +T+++ +  + I  ++   G+  +           A  +A       +E +    K    
Sbjct: 7   LTRKKDKGYQFIVSYKDETGKWKQRAKQGFENESKAEKAAKAYIFDLKEELEEKAKLNKD 66

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            +  T +     Y K      +  ++   F+    +            I  + I++ V+ 
Sbjct: 67  YENITFEEFSKMYLKHKK-NHVEPHTLTRFKLAISKFSD-LDSMRMTDIKVRDIQNIVDK 124

Query: 126 RKHT----PSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +     SS + +  ++  +F+ A++Q   +  NPC +V  PK      R  TK ++ 
Sbjct: 125 MVKSDTLKASSILAYKNTVSTMFESAIKQFEVIISNPCTNVIAPKAAKPNKRALTKIEVD 184

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
              S     +   L      Y GLR  +      Q +      IK  K            
Sbjct: 185 DLLSKIENKTH-YLISLIAAYCGLRAGEILGLTWQDIDEENDLIKITKQWKKLKNGEYGM 243

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V LP      L    I           +  +++      +    KAG +
Sbjct: 244 GPLKSSNSYREVTLPLKVKLELKKYKIEYSIGDEQRLFKYKDSSCIVSTLRYDYKKAGYD 303

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
            S H +R   A++    G T  E     G    +   TY+   AD         +++
Sbjct: 304 VSIHELRHSYASLLISKGLTHDEAAEVLGHTVEENIRTYSHLTADNK----NKVKKL 356


>gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae A909]
 gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae A909]
          Length = 380

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/373 (10%), Positives = 106/373 (28%), Gaps = 56/373 (15%)

Query: 11  VTKERTRHGKIIYYFRKGH-----GRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +  E+ + GK+ +  R         +R   L               L         +   
Sbjct: 1   MWSEKHKSGKVNFVERYKDPYTNKWKRTSVLMEKDTPRIRKEAQRILEAKIADI--VRKL 58

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV 123
           +        LI E+        +  +S ++ +    +I  + G +     I  +++++ +
Sbjct: 59  QTSDMLFTNLIDEWWIFYQ-QEIKRSSIVTLKGNIREIRAEFGINIPVVNIDPRYVQNYL 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
           ++   + +   +  + + ++F +AV  + +  NP    + PK K         E+     
Sbjct: 118 DNLDCSRNKKERNKSMLNLIFDYAVSLDIIKDNPARRAKLPKIKKTLNDWKKFEEKYLEE 177

Query: 183 ---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
                            +  L  EF+  +G R  ++      ++     +++   T    
Sbjct: 178 EEIKRLLKELFRRPSTRRLGLLSEFMSLNGCRIGEAISIEPDNIDFKNKTLQLHGTYDRT 237

Query: 233 -----------------ITVELPDGFMKLLA-------------MTPIGKETFFINNDKQ 262
                                +    M+++                       F   +  
Sbjct: 238 NGYINGEKTSPKTLASYRETIMTKREMEIIQELEFINELEKNTNPRYRDMGYIFTTRNGV 297

Query: 263 KMNATQFSIWFKAKATKA----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +    F++  K    +       N ++H  R    +  A+       +M   G      
Sbjct: 298 PIQINSFNLALKKANERLEQPINKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKT 357

Query: 319 A-ETYTKGADRIR 330
             + YT    +++
Sbjct: 358 TVQIYTHITKKMK 370


>gi|15923773|ref|NP_371307.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979110|ref|YP_001441369.1| hypothetical protein SAHV_0779 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255005573|ref|ZP_05144174.2| hypothetical protein SauraM_03860 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|14246552|dbj|BAB56945.1| integrase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721245|dbj|BAF77662.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 368

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 91/357 (25%), Gaps = 38/357 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-RE 59
           M+ +L L   + K+        YYFR  +  +                 A+        E
Sbjct: 1   MSYNLNLSHNIYKDAKLG---TYYFRITYYDKSNTRKYITRKGFKQRKDAVKKCNEMMDE 57

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                         L+ EY           + +       + ++      D  K+TT+ +
Sbjct: 58  LEGVGHLNRLPFDKLVEEYIDWYSARRKTSSVKALKTHTNNHLLPYFKSMDVFKMTTQDV 117

Query: 120 RSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                 +    H+     +    +  L   A++   +  N    V   + +++    +  
Sbjct: 118 MKFQNKKLKEGHSGDYLKKMHVYLVSLLNHAMKFHELKQNVASLVGNFEIESQKRLNYWT 177

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            +            Q +L F+ L YSG R  +      + +  +   I   KT       
Sbjct: 178 LEQFNQFYEALATQQQKLFFKLLFYSGARKGEIRALTWRDINFDDDFIHINKTDYHGEVT 237

Query: 233 ------------ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAK 276
                       +   +       L                    +  + +    WF   
Sbjct: 238 APKTKSAIRDIYLPTHMMYDIKDYLIWYKENNIYKDDYVLFGTFYKAYSESTIDRWFTNA 297

Query: 277 ATKAG---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                              H +R   A++  + GA+   +    G       E Y +
Sbjct: 298 LKVLDEQLPNGQNFPRIVIHELRHSHASMLVNLGASVMIIAQRLGHSD--TTEVYNR 352


>gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1]
 gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1]
          Length = 308

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 16/267 (5%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGV 123
           +  ++  L ++Y           + + +  S+  +I        +     +    I   +
Sbjct: 37  EQYSVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTL 93

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R ++ ++  + + ++  L + A +   +   P    ++ +          +E      
Sbjct: 94  RERGNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEHEEEKRLFAA 153

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    RL   FL+ +G R  ++       +Q    +    K+    TV L     K
Sbjct: 154 IKSRCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARK 212

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISAD 299
              +     +  F   ++ +     F   +     + G+        H +R   A+    
Sbjct: 213 ASHIPHERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVR 267

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
            G     +    G +T+     Y   A
Sbjct: 268 GGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium]
          Length = 238

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   + I K+       +  ++++      +  A +A + K  + H  R   AT 
Sbjct: 149 WPWQWVFPASRISKDPRTGILRRHHLDSSVVQKAVRDAARRADIPKRVTPHVFRHSFATH 208

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G K V     YT   
Sbjct: 209 LLEAGYDIRTVQELLGHKDVRTTMIYTHVL 238


>gi|325912776|ref|ZP_08175155.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
 gi|325477907|gb|EGC81040.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners UPII 60-B]
          Length = 373

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 38/358 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSP--R 65
             V K  T+ G I Y F+   G  I         +   +Y  A       +        +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKVWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   +  L +++  +    ++  ++   ++E Y   I  K G+    KIT   ++    
Sbjct: 65  QKQIKVNDLFTQWFDTYQ-TTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFAN 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
           +           L  +       +   Y+ +NP   +  PK+ T   R  +         
Sbjct: 124 ALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREEL 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------- 223
               K   S      L F  L  +GLR  ++       +  N                  
Sbjct: 184 DTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKY 243

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                +   ++ TV L     + L      ++                 +          
Sbjct: 244 IVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIY 303

Query: 277 ATKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +
Sbjct: 304 KQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSK 361


>gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 94/334 (28%), Gaps = 37/334 (11%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK +   Y     GRRIR  + +      A+       +  + ++     +   L 
Sbjct: 5   KQKNGKWLCELYPNGREGRRIR-RHFNTKGEAEAFELYTKNESGDKPWLGKKEDRRR-LS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTKHIR------- 120
            +I  +        +A  SR++          D I  +    D+     K +R       
Sbjct: 63  EIIQLWHNLHGQALVASKSRLAKLQIVCNGLGDPIASRLTAKDWAHYRDKRLRGEIDNGY 122

Query: 121 -SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED 178
               E     P +  +    +  +F    R  E+   NP   +   K   + +   T E 
Sbjct: 123 HKDPEKWIAKPITVNREQQYLEAVFNELKRLGEWSLPNPLDGIRVFKEAEKEMSWLTLEQ 182

Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           + Q      +     L    E  L +G R S++ R     L     +    K     TV 
Sbjct: 183 IPQLLLACHQYGHEDLTQIVEICLATGARWSEAERLTRPQLSPYKLTFTKTKGKKNRTVP 242

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKF 292
           +     + L+                          FK       +  +     H +R  
Sbjct: 243 ITKWLYEKLSTRQGRMFKPCYQE-------------FKKMLLLTDIELTEGQKTHVLRHT 289

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                   G     L    G   + +   Y+  A
Sbjct: 290 FGAHFMMNGGNILVLQKILGHANIRETMKYSHFA 323


>gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 400

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 107 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 166

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 167 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 225

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 226 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 285

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 286 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 345

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 346 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 377


>gi|237708454|ref|ZP_04538935.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|229457675|gb|EEO63396.1| transposase [Bacteroides sp. 9_1_42FAA]
          Length = 430

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ +         +  + ++T + I +     K     
Sbjct: 140 METLAGIDYSPVTINRYKNVVKKLQQFIPSYYGKEEVTFHELTPEFIHAFDIYLKTEGRL 199

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 200 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 258

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII-------T 234
             +    R  F F  ++GL  SD      +HL  +     +  K +              
Sbjct: 259 IPRLELVRDIFVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISN 318

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           + L    + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 319 IPLLPVPLAILEKYREHPACIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 378

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RISS 341
             T           ++    G  +    + Y +  +  ++  + N + R+S 
Sbjct: 379 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNNVKERLSQ 430


>gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a]
 gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a]
          Length = 355

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 85/314 (27%), Gaps = 25/314 (7%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
                + AY++ L       E    P      L  ++  +  S      A  +R    S 
Sbjct: 49  RSPETVRAYVADLASLRAHAEREGRPELADLDLT-VLRSWLASMRAAGAAPATRARRASL 107

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
                  +            + + V +R     +  Q    +  +    +          
Sbjct: 108 ARVFSAYAA-------RRGFLTTDVAARLVGARAVRQVPQVLTAVAARQLLDAVSGPGQA 160

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              +   +           D        + G +  L  E L  SG+R S+ C   +  + 
Sbjct: 161 PGDQAAAQVRHLTGTRPGRDDDAA-VREALGLRDALVLELLYGSGVRVSELCGLDLGDID 219

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNAT 267
           +    ++   K G   +V         L                     +     +++  
Sbjct: 220 DERRLLRVLGKGGRERSVPFGVPAAGALRAWRTSGRPLLAAPQSGSALLLGQLGGRLDPR 279

Query: 268 QFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                      + G+     + HG+R  +AT   + GA    +    G  ++   + YT 
Sbjct: 280 TVRRVLAR-CVELGIVPPGLTPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTH 338

Query: 325 GA-DRIRLGIKNSR 337
              +R+R   + + 
Sbjct: 339 VTPERLRAAFEQAH 352


>gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380]
 gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380]
          Length = 330

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 63/259 (24%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           I  +         ++ N++    +    + R+  D    ++    I      +   P   
Sbjct: 61  IEAFLSHLATDCKVSANTQRQALNAIVFLYRQVLDQPVDEL----IEHIKARKNRRPQVV 116

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           +      +VL +       +A        R              +         +G + R
Sbjct: 117 LSQSEVQQVLARMTGTHLLMAQLLYGGGLRWMECIRLRVQDLDFERDLIYVRDGKGGKDR 176

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                 + +  L + +                   +           E    +  +    
Sbjct: 177 TTTFPASIKNGLQTHVDRIGQLHEQDLAKGYGSVYLPNALDIKYPNAEKEFAWQYVFPSK 236

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHE 306
            +  +       +  +  +      K    +AG++K    H  R   AT   + G     
Sbjct: 237 RLSTDPRSGKIRRHHVLESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRV 296

Query: 307 LMATYGWKTVDQAETYTKG 325
           +    G   V   E YT  
Sbjct: 297 VQELMGHADVKTTEIYTHV 315


>gi|327413091|emb|CAX68120.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica]
          Length = 371

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 98/304 (32%), Gaps = 32/304 (10%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118
             R K   L   + +Y ++          +  +   F +I         D    +IT+  
Sbjct: 2   KKRIKKMLLGKALDKYYRTVSVN------KRGYMQEFYRISVIKRSALADKCMDEITSVD 55

Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKR 166
           I    ++R            +P++    L  +  L+  A  +     +  +    + P  
Sbjct: 56  IAEYRDARLGVVSKRTGRAISPNTVRLELGLLSALYNIARIEWGTCTHNPVEYVRKPPPS 115

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSI 224
                R  + E+ +  ++      Q    F+  L + +R  +      +++  +  +  +
Sbjct: 116 PGRNRRLTSTEERRITRALRKRNPQQLAIFQLALETAMRQGEILALRWEYVDLHLGVAHL 175

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
              K GT   V L     ++L                    +  F   ++    + G+ +
Sbjct: 176 PVTKNGTARDVPLSYKARQVLREFAGPLSGPVFTY-----TSNGFKSAWRTLIAELGIED 230

Query: 284 KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
              H +R  + +   + G     E+ A  G K++   + YT   A ++   +   RR + 
Sbjct: 231 LHFHDLRHEAVSRLFELGTLNMMEVAAISGHKSLSMLKRYTHLRATQLVSKLDARRRQAQ 290

Query: 342 VVDS 345
              +
Sbjct: 291 KFAA 294


>gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
 gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596]
          Length = 73

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             K  A ++G+ K  + H +R   AT   + GA    +    G   +   + YT  
Sbjct: 2   ILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHV 57


>gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 103 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 162

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 163 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 221

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 222 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 281

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 282 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 341

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 342 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 373


>gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 267

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 75/259 (28%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  + K  +  +LA N++ ++     Q  +K        +    +        + P +  
Sbjct: 2   IHLFEKHLNQSNLAENTQSAYLFAVKQYHKKFDQLSKINLQRYKVFLIEN---YKPQTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++    ++  ++++      +  +           +T       K           
Sbjct: 59  LRLRAINYYLEFIKKEKWKLSFVKVQQKPFLENVISEADYTYFKKCLKKDN---ELYWYF 115

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              F+  +G R S+  +   +H++     + ++                  + L +    
Sbjct: 116 VIRFMAATGSRVSELIQIKCEHIKIGYLDLYSKGGKLRRIYIPKSLQKECSEWLRLNNKH 175

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N    ++     +   K  A +  ++      H  R   A    +       L 
Sbjct: 176 NGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAKSFLERFNDIAFLA 235

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y +   
Sbjct: 236 DLMGHESIETTRIYLRKTS 254


>gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 409

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 99/309 (32%), Gaps = 26/309 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISF---ESYF-DQIIRKS 106
           +T  +E +    +   TL   +  + +         +A +S  ++     Y  + I ++ 
Sbjct: 93  ATAVKELLQGSVETQITLLKRLDMHIEDMRSRIGIDVAKSSMSTYIYTRRYLGEFIQKRF 152

Query: 107 GDFDYR------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D         I  +     ++ +     +A  +L  ++ + + A ++ +      ++
Sbjct: 153 KTSDVAFGQLNEHIPWEFQDYILKDKGLAVDTARHYLAILKKICRMAFKEGHAEKRYFVN 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQ 215
            + P+   +  R  ++ED ++ +       +      R  F F  Y+G+  +D+      
Sbjct: 213 FKLPQENRKPPRALSREDFEKIRDVVIPPERITHNIARDLFLFACYTGVPYADAVSITRD 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++  +       K        L    +  + +A+    +            +        
Sbjct: 273 NIYKDDKGDLWLKYLRKKNEYLARVKLLPEAIALIEKYRSNDRKELFPMIHHPN-MRRHM 331

Query: 274 KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K     AG+  +   H  R    ++   +AG     +    G   +   + Y +   +  
Sbjct: 332 KGLRDLAGISCDLVYHMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKK- 390

Query: 331 LGIKNSRRI 339
              ++  + 
Sbjct: 391 -LFEDMDKF 398


>gi|289628243|ref|ZP_06461197.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866264|gb|EGH00973.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 404

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 100/378 (26%), Gaps = 59/378 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYI 61
           P         G + Y    G  +   L      T   A          A     P     
Sbjct: 28  PGFFIRVLPSGHMSYMVTWGRNKNATLGRVGVLTLDQARKEAGRYLADAHEHGEPLAITQ 87

Query: 62  NSPRKKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                   TL+  I E    + ++ H G     +  + ++ FD I+          IT +
Sbjct: 88  GRRETTTPTLRAFIDETYMPWFRAHHRGE--EKTLYNLDNNFDTIM----HQRLDAITGR 141

Query: 118 ---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------- 167
               +R+G  +  +  S+A + + S+  +F  AV  EY+  +P   ++  K         
Sbjct: 142 DLEQLRTGWLNAGNKASTANRKMGSISGVFSRAVDWEYLPSSPLDKIKPLKVDTKGQVRY 201

Query: 168 ---------------TEGIRPWTKEDMQQFKSFWSEGSQPRL-----------AFEFLLY 201
                           E      ++   ++++  ++   P L                L 
Sbjct: 202 LSKDETLNLKNALEVREHRACLERDSANKWRAERNKALFPDLTKLAFTDHLKPMVLVSLN 261

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFI 257
           +G+R  +      Q +  +   I              + +       L            
Sbjct: 262 TGMRRGELFGLTWQAINFDRKVITVGGDTAKTSETRHIPMNTETFDTLKAWSKQSGASVF 321

Query: 258 NNDKQKMNA-TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                           +     +A +     H +R   A+    AG   + +    G   
Sbjct: 322 VFPGLDGGRMEDVKSVWLKLLQEACITGFRWHDMRHDFASRLVMAGVPLNTVRDLLGHTD 381

Query: 316 VDQAETYTKGADRIRLGI 333
           +     Y   A  ++   
Sbjct: 382 IKMTLRYAHLAPDVKAAA 399


>gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755]
 gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755]
          Length = 137

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                 K   F      K +        K  A KA +    + H +R   AT   +AG  
Sbjct: 43  YRNWKPKAYLFEGQKVGKYSGQAVVNVVKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVD 102

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
             ++    G ++    E YT  A
Sbjct: 103 LRQIQVLLGHQSTKTTEIYTHVA 125


>gi|326331609|ref|ZP_08197898.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
 gi|325950597|gb|EGD42648.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium
           Broad-1]
          Length = 334

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 92/293 (31%), Gaps = 21/293 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRK 127
           + L   +  S      A ++R ++              +   +          +     +
Sbjct: 39  EALARRFLLS-----YAGHTRAAYARDLADWFGWCAALEIDPLAANRAMVDGYARHLETR 93

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P++  + L+++   +++ V ++ ++ +P   ++RPK   +           +     +
Sbjct: 94  RSPATIARRLSAIAGFYRYGVAEDVLSASPAQHIKRPKTSNDSQTLGMDRGEARAFLAAA 153

Query: 188 EGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFM 242
                R A   +L    GLR S++  A V  L ++        T        V L     
Sbjct: 154 REHSSRAAALVMLLLHDGLRISEALGADVTDLSHSRGHRILTITRKGGARRDVVLNPATS 213

Query: 243 KLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATI 296
           + L            F+ +   + + ++     +     AG+      S H +R    T+
Sbjct: 214 QALDAYLDARVDGPVFVTSTGNRWHRSEAFRLIRRLGASAGIEHGDKLSPHSLRHTFVTL 273

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDSDDP 348
           + +AG    ++    G         Y +G  +  R            +    P
Sbjct: 274 AREAGVPLEDVQDAAGHADPRTTRRYDRGRHNLDRHPAYALGAFPRRLRVSRP 326


>gi|321314259|ref|YP_004206546.1| integrase family protein [Bacillus subtilis BSn5]
 gi|320020533|gb|ADV95519.1| integrase family protein [Bacillus subtilis BSn5]
          Length = 399

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 105/373 (28%), Gaps = 58/373 (15%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-G 85
            G  ++I      +       + A+         I+    K  T + L +++ +      
Sbjct: 24  TGKRKQIARRGKTKKEAEKRVLEAIAALVEDG--IDESIVKKMTFEKLAADWIRDYALTT 81

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRV 142
                +          + R     +  KITT+  +  +        +        T+  +
Sbjct: 82  GNKKGTIRIRTKEIKILNRYIAKTNIAKITTRKYQKILNDLTEQGYARNTISGVHTTAGL 141

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-- 200
           +FK+A++++ +  +P      PK++            +++              EF L  
Sbjct: 142 IFKYAIQRKLLKHSPTEGAVVPKKRLTVEDIENNPIEEKYFEKEELEEFLLTVKEFGLDM 201

Query: 201 ---------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------------- 232
                    +SG+R  + C      +      I+  KT                      
Sbjct: 202 DLERFYLLAFSGMRSGELCALKWTDINFETNEIRITKTIYSENNNMKEYELVPPKTAGSV 261

Query: 233 ITVELPDGFMKLLAMTPIGK-----------------ETFFINNDKQKMNATQFSIWFKA 275
            T+E+ D  M +L    + +                    F   +          +  + 
Sbjct: 262 RTIEVEDQIMDMLKEYQMRQKKRRLQSRIKPEEYHDGNFVFARENGYPFLPKNIIVRMER 321

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLG 332
              K  + K  + H  R    ++  +A      +M   G   +      YT   +  ++ 
Sbjct: 322 LLEKTSIKKHATPHIFRHTHISMLTEARVDITTIMKRVGHDDMKTTMRIYTHVTE--KMK 379

Query: 333 IKNSRRISSVVDS 345
              S+++     +
Sbjct: 380 EDASQKVQKTFGN 392


>gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05]
 gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05]
          Length = 385

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/385 (12%), Positives = 114/385 (29%), Gaps = 48/385 (12%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHG---------RRIRLPYPHESTFIPAYMSALT 52
            P  + P  +   + + GK  Y F+   G         +  R  +        A +    
Sbjct: 1   MPRKKDPE-IYDYKLKSGKTKYGFKTYVGINPEDGKPIKPTRQGFNSYKEAEAAKIKLKA 59

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
                            T++ +   +  S    ++  ++  + +  + + I  + G+   
Sbjct: 60  AGAISVANNRKAESNKKTVQEVYDIWF-SIKKDNVRESTLYNIKCDWENHIKPEFGNKYI 118

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----- 166
            +I    ++  V        S    +  +  + K+A+ + +   +P   +  PK+     
Sbjct: 119 DRIDITRLQKFVNWLSQKYISYQYKVNILHRIIKYAILRGWCNEDPFNKIVIPKKSSKKS 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIK 225
                  +  +++++F S   E +    AF  +L   GLR  ++     +++  +   + 
Sbjct: 179 DRPKENYYNLDELKEFLSAAKEHNYSYYAFFVVLGNLGLRRGEALALKWKNIDFDKQIVH 238

Query: 226 TQK-----------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                     + L      +L      ++ F  ++D        
Sbjct: 239 IDHTVSHDLQNKKVIGDPKTYSAKRDLALSKNLNYVLREYRKTQKVFNRDDDYIFHTKNG 298

Query: 269 -------FSIWFKAKATKAG--VNKSAHGVRKFSATISADAG--ATAHELMATYGWKTVD 317
                   S W K+           +AHG R   AT+  +     T  ++    G   V 
Sbjct: 299 SFFNSPAVSEWMKSIYHFYPELRKITAHGFRHSLATLLYEGSDKITPKDVQYVLGHSRVT 358

Query: 318 QA-ETYTKGA-DRIRLGIKNSRRIS 340
            A   YT    ++          + 
Sbjct: 359 TALNIYTHVTQNQKSNIKNAVNNLD 383


>gi|325674344|ref|ZP_08154033.1| phage integrase [Rhodococcus equi ATCC 33707]
 gi|325555024|gb|EGD24697.1| phage integrase [Rhodococcus equi ATCC 33707]
          Length = 405

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 122/372 (32%), Gaps = 39/372 (10%)

Query: 9   PFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
             V  ++ R  +      +  R     R              +  A T +        + 
Sbjct: 20  GNVKYKKVRTERWGQGKRWLARWEENGRRVSKAFDGKDAADTF-IARTVTEQADGTYIAK 78

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-- 122
             +  T+  +   +  +      + + R  +++ +  I  + GD    +I+   + +   
Sbjct: 79  ANREVTVAEVWPTWWSTKAAK--SKSLRDGYQAAWKHIEPRWGDVACAEISRHAVAAWLP 136

Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                       S     SS  + +  +  + + AV +  +  NP    + P+++    R
Sbjct: 137 TITGRYTDEEGNSLPLGESSLRKVMIVLHGVLETAVEERIILSNPVKMKDAPRQRETTRR 196

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------ 226
             +  ++ + +      +  +L  + L+++G+R  ++    V  L       +       
Sbjct: 197 YLSVVEVDRLREAM-PHTSAQLVVDVLVHTGVRPGEAFGFQVGDLDPIRGRCRVSRDVDA 255

Query: 227 ----QKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 T T    ++P G   LL            E      D +     ++   ++   
Sbjct: 256 KGGADDTKTGRHRDVPVGGDLLLDLENEAEGCDRGEWLLRMPDGRGWTLPRWRPIWEKAI 315

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
            KAG++    + +R  +A+++  +GA    +    G ++     + Y    D     +  
Sbjct: 316 EKAGLDDLDTYELRHTAASLAIHSGANVKTVQRMLGHRSAAMTLDIYGHLWDEELDALP- 374

Query: 336 SRRISSVVDSDD 347
            +R+S  + ++ 
Sbjct: 375 -KRMSEHMKAER 385


>gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVES 125
            TL+ L   +         +  +   +       +            +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +    +             LT++R+LF+W +++  +  NP   +  PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T+  +Q   +    G + R   E L  +G+R ++     +  +      +  ++   
Sbjct: 139 EAETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKG 198

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----------WFKAKATKA 280
                +P G   L+ +    K+       +        S                +A ++
Sbjct: 199 GRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 281 GVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           G +       H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|260221112|emb|CBA29352.1| hypothetical protein Csp_A11710 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 362

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/308 (8%), Positives = 76/308 (24%), Gaps = 26/308 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                 +   A++        +   +  P+      K +I EY  +         ++   
Sbjct: 34  RTFDRKSAAQAWLKKRETELAEPGALKKPKDPL--FKDVIDEYNATKQKEHGKTKTQ--- 88

Query: 96  ESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
               + I     G+    +I ++ I   +ES    P++   +++ +  +F          
Sbjct: 89  --VLNTIKASCLGELRCSEIDSQAICRFIESIDAKPATRGNYMSHLASVFTVVKPLWGYP 146

Query: 155 INPCL-----------------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           ++                         +   + +         +           R+   
Sbjct: 147 LDKEQATSAQTVLTAMGITGKSDNRTRRPTLQELDLLMNHFSVKELKRRDSIPMTRIIAF 206

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            +  +  +   +        + ++  I          +              + K     
Sbjct: 207 AIFSTRRQEEITRILAEDLNEADLKVIVRDMKNPGEKIGNHVETQLTPEALQLIKLQNKS 266

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                  +       F+      G+   + H +R    +   + G +   +    G +T 
Sbjct: 267 KGPIWPYSGESIGTSFRNACLLLGIEGLTFHDLRHEGISRLFELGWSIPRVAQVSGHRTW 326

Query: 317 DQAETYTK 324
              + YT 
Sbjct: 327 KSLQRYTH 334


>gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 336

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 49/308 (15%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127
           +  YR       + +  +  ++ +    ++   G        +   +T   +RS +  ++
Sbjct: 21  LERYRTFLSAERNRSPATVTAYLADLVSLLDHLGRMTGDRPAELTDLTLPVLRSWLARQR 80

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            T    ++  +   + R    WA R   +  +    +  P+           +   Q   
Sbjct: 81  TTGAARATLARRAAAARSFCAWAHRTGRLPQDVGARLAAPRADKTLPAVLRADQAHQMLD 140

Query: 185 FWSEGS--------------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +  +                          + +   E L  SG+R S+     +  + 
Sbjct: 141 APAVSAPDQSPDTGTGTGTGTGTSAVEQAMARRDQAILELLYASGIRVSELTGLNLDAID 200

Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNAT 267
            +   I+   K     TV       + L                    F+    ++++  
Sbjct: 201 RHRRVIRVLGKGNKQRTVPFGLPADRALGDWLDRGRPVLADDESGAAVFLGRRGRRIDPR 260

Query: 268 QFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   +          + HG+R  +AT   + GA    +    G  ++   + YT  
Sbjct: 261 AVRTLVHRRTAAVDGAPEIAPHGLRHTAATHLLEGGADLRTVQELLGHASLATTQIYTHV 320

Query: 326 ADRIRLGI 333
           +      I
Sbjct: 321 STERLAAI 328


>gi|126664740|ref|ZP_01735724.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126664867|ref|ZP_01735851.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666649|ref|ZP_01737627.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126666883|ref|ZP_01737859.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126628599|gb|EAZ99220.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126629037|gb|EAZ99656.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631066|gb|EBA01680.1| phage-related integrase [Marinobacter sp. ELB17]
 gi|126631193|gb|EBA01807.1| phage-related integrase [Marinobacter sp. ELB17]
          Length = 336

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 71/295 (24%), Gaps = 36/295 (12%)

Query: 67  KPTTLKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITT 116
            PT    L+  +         +++  +  ++   F  ++   G              +  
Sbjct: 7   APTEFGALLQRFFAERLIQQQNVSPRTVAAYRDTFKLLLNYVGRATGKPPAMLALCDVDA 66

Query: 117 KHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             + +        R +T  +    L ++R    +   Q   A++    +     K     
Sbjct: 67  ALVLNFLTHLETERHNTIRTRNARLAAVRAFAHYVASQAPPALHLAQQILAIPMKRFERP 126

Query: 173 PWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                   + +            G +       L  +G R S+     V  +     +  
Sbjct: 127 MLEFLSRDEVRALLAAPGITTWCGRRDTAMLTVLYNTGARVSELIGIRVADITLAATASV 186

Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKA- 277
               K     TV L     K +       +               M  T  +        
Sbjct: 187 RLHGKGRKQRTVPLWKETAKEIRQWLKYADLHVEQPLIPNRSGLPMTRTNVAERLNLAVS 246

Query: 278 -------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                    AG   S H  R  +A     AG     +    G ++      Y + 
Sbjct: 247 TATKMCPQLAGRRISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEA 301


>gi|85709932|ref|ZP_01040997.1| hypothetical protein NAP1_13643 [Erythrobacter sp. NAP1]
 gi|85688642|gb|EAQ28646.1| hypothetical protein NAP1_13643 [Erythrobacter sp. NAP1]
          Length = 322

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 91/282 (32%), Gaps = 11/282 (3%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
                    + L  +  + E    P+ K  T++  +  Y        L+  +   +    
Sbjct: 12  SLRAARERSAELRLALRRGEDPRRPKVKVPTIEEAMERYLA--GRPDLSAETVRWYRKKV 69

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +  +         +I  + +RS  E       P  A   +  +++L     R   +  NP
Sbjct: 70  EVPLAPLRKLPVDRIDRETVRSLHEKITQKAGPYGANGAMRVLKLLLNDVARTHDLDPNP 129

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAG 213
                  +   E  R W     +    +           R  +  ++ +GLR +++  A 
Sbjct: 130 VS--RGVRMNKEEPRDWAVGPQEMPLLWRRLDDMEDRVRRACWLLMMATGLRSTNARSAR 187

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
            +HL+++      +   +  +  LP   + +  +  + + T  + + +   ++   S + 
Sbjct: 188 WEHLEDDGVLFVPKAK-SGRSFRLPLPRLVIQELGEVKELTAPLESPQIFPSSGSKSGYI 246

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
           +  A       + H +R    T + +AG     +        
Sbjct: 247 ERMARTTEFPYAPHQMRHTYRTHALEAGIDFQSVTMLMDHAN 288


>gi|71274954|ref|ZP_00651242.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71276768|ref|ZP_00653032.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71901577|ref|ZP_00683659.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71902269|ref|ZP_00684268.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71162435|gb|EAO12173.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71164686|gb|EAO14400.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71727980|gb|EAO30198.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728663|gb|EAO30812.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 276

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 73/260 (28%), Gaps = 13/260 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKH 128
                  +            +     +    +           I +  I   + +++ + 
Sbjct: 6   WGDAALRWLSEKS----RKATAHEDAAKLRWLASYFAGKKLAAIDSDLILRVATLKAAET 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + S+A ++L  +R + + A                P+     +R  T    +   S    
Sbjct: 62  SSSTANRYLALIRSILRRAFDIWLWIDRCPHISLFPEPIK-RVRWLTPVQARSLLS--EL 118

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA- 246
               R    F L +GLR ++  +     +      ++                 +  L  
Sbjct: 119 PLHQRAMVIFALSTGLRQANILKLRWDQVDLVRKVLRIPADQAKGRQAIRIPLSLPALQV 178

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                G+   ++     +      +  +     +AG+ +   H +R   A+  A +G   
Sbjct: 179 LQAQRGQHHEWVFTYCGRSIRWVNTRAWHQALQRAGIQDFRWHDLRHTWASWHAQSGTPL 238

Query: 305 HELMATYGWKTVDQAETYTK 324
           + L    GW++      Y  
Sbjct: 239 YVLQDLGGWQSESMVRRYAH 258


>gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 304

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           + EY         + N+ IS+ +  +Q ++         +T+  IR  ++          
Sbjct: 2   LHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV + Y+  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLLH 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7]
 gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7]
          Length = 393

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 111/332 (33%), Gaps = 54/332 (16%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121
           +      + L  E+ ++    +L   +   +E       ++    G     KIT +H++ 
Sbjct: 63  KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLTHRVYPAIGHLRIDKITARHLQG 119

Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            V S               P +    L+ +  +F +AVR + V+ NPC  V  PK + + 
Sbjct: 120 FVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSDNPCRKVTIPKGEVKE 179

Query: 171 IRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------- 221
              +++E++ Q  +  + E ++ R  F  + YSG R S+      + +            
Sbjct: 180 KPIYSQEEIAQLLTAINGEDTKYRAFFYLIAYSGFRRSEMLGLEWKDIDFENNIISIKRT 239

Query: 222 ---------FSIKTQKTGTIITVELPDGFMKLLA--------------MTPIGKETFFIN 258
                    ++  T+   +   +++    M +L                  +  +  F+ 
Sbjct: 240 SNYTAERGIYTDTTKTKRSKRVLKISPYIMNILKELKDEQDEEALRLGDKWVESDRLFVK 299

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW-KTV 316
            + + MN      W K    K  +     H  R F+A+    +G     +    G   + 
Sbjct: 300 WNGEPMNNQTPYGWLKEFCEKNDMPFYGIHSFRHFAASALISSGLDVVTVSGALGHCNSG 359

Query: 317 DQAETYTKGAD--RIRLGIKNSRRISSVVDSD 346
                Y       + R+  +      S +  D
Sbjct: 360 TTLNVYAHMFQTAQARVA-QAMDGAFSFLPQD 390


>gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 93/309 (30%), Gaps = 34/309 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +T   P         +   TL+ L   +         +  +   +       +       
Sbjct: 1   MTRXNPPTATEXHISRHGQTLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLXWCEPRG 60

Query: 111 YR---KITTKHIRSGVESRKHTPSS------AIQ---FLTSMRVLFKWAVRQEYVAINPC 158
                +++   + +     +    +             LT++R+LF+W +++  +  NP 
Sbjct: 61  ITYAPQVSLAVLEAYQRWLQGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPA 120

Query: 159 LSVERPKRKTEGI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
             +  PK +            T+  +Q   +    G + R   E L  SG+R S+     
Sbjct: 121 ELLALPKEERRLPAQVFSEAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLL 180

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---- 269
           +  +          + G      +       L       +       ++  +   F    
Sbjct: 181 LSDVDFTRGV-VNVRRGKGGKDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHK 239

Query: 270 ----------SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVD 317
                     ++  +A    A + K+   H  R   AT   + GA    + A  G + ++
Sbjct: 240 GTGLAHGTLTAMAGRAIREGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLE 299

Query: 318 QAETYTKGA 326
             + YT+ A
Sbjct: 300 TTQIYTRVA 308


>gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195]
 gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195]
          Length = 319

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 73/303 (24%), Gaps = 50/303 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VES 125
           T    I   R        +  +  S+  +    IR         IT   I          
Sbjct: 5   TFLEAI---RTEIRVRHYSYQTEKSYLYWNRYFIRHCYIRHGADITPTLIEQFLCFLAVE 61

Query: 126 RKHTPSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRK------TEGIRPWTKE 177
            + + S+  Q L ++    +    +    +      + +R  +          I   +  
Sbjct: 62  CEVSASTQKQALCAIVFACRHVLKIEPNELQFPYAKAPKRIPQVLSNEEAKLIISNLSGY 121

Query: 178 DM----------------------------QQFKSFWSEGSQPRLAFEFL-----LYSGL 204
                                         +    +  +G + R+          L S +
Sbjct: 122 HYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQKDRVCMLPNGLIDVLKSQM 181

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           +               + S+         +      +  L   +            +  +
Sbjct: 182 KQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYLFPASRRCMHPSDNYVCRHHI 241

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           + T FS   +   T  G++K  +AH  R   AT     G     +    G   V   E Y
Sbjct: 242 HPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIY 301

Query: 323 TKG 325
           T  
Sbjct: 302 THV 304


>gi|109289985|ref|YP_655517.1| integrase [Mannheimia phage phiMHaA1]
 gi|254360826|ref|ZP_04976973.1| bacteriophage integrase [Mannheimia haemolytica PHL213]
 gi|90110591|gb|ABD90601.1| integrase [Mannheimia phage phiMhaA1-PHL101]
 gi|90110642|gb|ABD90651.1| integrase [Mannheimia phage phiMhaA1-BAA410]
 gi|153092300|gb|EDN73369.1| bacteriophage integrase [Mannheimia haemolytica PHL213]
          Length = 332

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 99/318 (31%), Gaps = 21/318 (6%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++G   Y  +       +       T    +  AL       EY  +P         LI 
Sbjct: 6   KNGNK-YRAQVRKKGIYKTATFSTKTEANRWAYALEAQIDAGEYNTTP---NILFAELID 61

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           +Y K           R              G+     +T +H+R     R  +  P S  
Sbjct: 62  KYLKEVTPTKRGK--REERYRLLRIAGSNLGNIPLPALTKEHLRQWQNQRLQEVQPVSVS 119

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190
           +   ++  LF  A+  +Y+  NP  ++E+ K      R ++ E++ +             
Sbjct: 120 RERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYSDEEIDKLIFVSGYSPNQPP 179

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +   A  F + + +R  +      +H+     +    +T    +  +P     + 
Sbjct: 180 LLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTAFLPQTKNGYSRTVPLSTKAIA 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
            +  + +      N   ++ +      F+    KA +   +   H  R+ + T       
Sbjct: 240 ILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANLHNADLHFHDTRREALTRL-SKYL 298

Query: 303 TAHELMATYGWKTVDQAE 320
           T  EL    G + +   +
Sbjct: 299 TVMELAKVSGHRDLSILQ 316


>gi|37527360|ref|NP_930704.1| hypothetical protein plu3487 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786794|emb|CAE15860.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 352

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 86/284 (30%), Gaps = 31/284 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+K  + EY K     +L+ ++   ++      + +       ++T   +++ ++ R  
Sbjct: 49  RTIKDYLDEYLKICETRNLSPSTINGYKK-CKTALSELHKIPVVELTPAILKTWIQKRST 107

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187
              +    L+ +R     AV    +++NP   V   + +TE I   ++  +         
Sbjct: 108 ALKTIRNNLSFLRSAIDEAVTDCLISMNPVNLVTASRYQTERIENDSEYIVDPLSPNEVT 167

Query: 188 -----EGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
                 G++ +      L+   +GLR S+ C    Q +     +   Q            
Sbjct: 168 ALLSAAGNKQKQWENLFLFAIHTGLRSSELCALRWQDIDFIGKTAHVQSAKVVGIIKGTK 227

Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKA 280
                  VEL    M  L               +       +          +     KA
Sbjct: 228 TKAGTRKVELNTDAMSALLNQKAFTFMKGNVIFEDPKTGEAWAGADAIRKKAWVPTLRKA 287

Query: 281 GVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           G+     +  R   AT     G     L A  G K  +     Y
Sbjct: 288 GIRYRNPYQTRHTFATKHISQGVNLFWLAAQMGHKGPEMLFRHY 331


>gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1]
          Length = 387

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 79/334 (23%), Gaps = 75/334 (22%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS 132
           + ++         + N+   +           G    D+R++  + +    +  +  P  
Sbjct: 46  VEDFLAYLTARGASPNTVQGYAYDLRDFFVWLGQVGLDFRRVRLEVVAQFFDWLR-RPKL 104

Query: 133 AI--------------------QFLTSMRVLFKWAVRQE--------------------- 151
           A                     +   ++   +++  R++                     
Sbjct: 105 ARAPEVFVLPGVGQALENTTLQRKRAALASFYRFHARRDESVPALLGNLLARQPTGSYTP 164

Query: 152 -----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
                        S  R     +  R  T ++ Q+  S  +   + R     L  +GLR 
Sbjct: 165 MLAHTQRGGEVEYSPIRIHAHRKPPRTLTSDETQRLMSACNRR-RDRFLIALLDEAGLRI 223

Query: 207 SDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           S++       L           +           +    + +          +  +    
Sbjct: 224 SEALGLRHADLNLRKGEVHVVPRENNANQARVKGMKGRIIPVRPELFDRYAAYMESEYGT 283

Query: 263 -----------------KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
                             M     +   +    + G+ + S H  R   AT    A    
Sbjct: 284 LDCDFVFANLFRAPIGSPMTRANVNELVERLQKRTGITHFSPHVCRHTYATRLLRAEVPI 343

Query: 305 HELMATYGWKTVDQA-ETYTK--GADRIRLGIKN 335
             +    G  +     E Y+     D  R+ +  
Sbjct: 344 EVVAELLGHASPQTTAEIYSHLDVEDHRRVLLSA 377


>gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE]
 gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE]
          Length = 324

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 79/276 (28%), Gaps = 24/276 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + +Y       SL+  +  ++++    I  K G  +Y       +R  +E +    ++  
Sbjct: 39  LEDYCFGRKRNSLSKTTVKNYKAATKAIFNKLGYLEYSDQYVSMVRRAIEGKPS--NTVF 96

Query: 135 QFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            ++T+++ LF+        +A                         +   +      +  
Sbjct: 97  LYMTALQELFRANYLEDYEIAKPKVTRNCTNDENKYHKPQEIVRLFEAIGTDTLYNCRDS 156

Query: 194 LAFEFLLYSGLRCSDSCRAG-------VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L ++ LR S+ C             +  +       K+  +  + +P      + 
Sbjct: 157 AIISLLYFAALRNSEVCHLEVGDYDLENHFVTIHEHGKWHPKSYQVRKLYVPKECHAKIL 216

Query: 247 MTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKSAHGVRKFSATISAD 299
                +E   I +    + +                +A  AG+    H +R   AT  A 
Sbjct: 217 AWYKVREQENITSKTLFLTSNGVPFNDLSLRNVIVRRAKDAGLKTYPHKLRHSRATHLA- 275

Query: 300 AGAT------AHELMATYGWKTVDQAETYTKGADRI 329
            G           L    G  ++     Y   +D  
Sbjct: 276 NGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDEE 311


>gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 310

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 27/292 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
            Y           ++  S+           G  +  Y  I  + +              +
Sbjct: 12  AYIAHLREVG-RYSTAKSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRN 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGS 190
           +   ++  +R ++  AV    V+  P L            +     + ++          
Sbjct: 71  TVSTYMRRIRHIYNLAVEAGEVSYIPNLFKGVFTGVESKRKKALPLDSLRSLMGTPRVEP 130

Query: 191 QPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + R           +SG+   D      +++++ + S   QK+G+ I VE+P     LL 
Sbjct: 131 EMRRTQLCFCLMFSFSGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLD 190

Query: 247 MTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGV--NKSAHGVR 290
              +  +                             F+   ++ A   GV    +++ +R
Sbjct: 191 ELAVCTDKDSPYLFPFLSGKKTGEAAYAEYNGALLRFNRNLRSLAETCGVGEPVTSYTIR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AT   +       +    G  ++   + Y K     RL   N     SV
Sbjct: 251 HSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319]
 gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  S+ S    +           D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHIGVDIRKESMASYHSTKIHLQEFIQKKYKVSDLAFSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    I     V+  K   +  +   +   +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADILLFDKVKISKGNKKLPKALDRGAFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLHFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RHK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4]
 gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 409

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 25/282 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKH 128
            K+      A  +   +      +           D  + ++T + I       +E++ +
Sbjct: 121 LKARIGIDRAKGTYPGYHYMRLTLGEFIKHQYKVKDLAFGQLTEQFIHDYQTFAMENKGY 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    L  ++ + + A +  Y           PK+     R  ++E  ++ +     
Sbjct: 181 AIDTVRHHLAILKKICRLAYKDGYADRIHFRHFTLPKKTETTPRALSRESFERIRDVEIP 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +      R  F F  Y+G+  +D      ++L  +       K             +K
Sbjct: 241 AYRKSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKY--RRKKNELRASVK 298

Query: 244 LLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS- 297
           LL       E +   +        +        KA AT AG+      H  R   A++  
Sbjct: 299 LLPEAVTLIEKYHSEDRDTLFPLLHWPNLRRHMKALATLAGIKDDLCYHQARHSFASLIT 358

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +AG     +    G   +   + Y + + +     ++  + 
Sbjct: 359 LEAGVPIETISRMLGHSDISTTQVYARVSPKK--LFEDMDKF 398


>gi|166031463|ref|ZP_02234292.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
 gi|166028868|gb|EDR47625.1| hypothetical protein DORFOR_01160 [Dorea formicigenerans ATCC
           27755]
          Length = 343

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 77/268 (28%), Gaps = 23/268 (8%)

Query: 76  SEYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------- 125
           + Y  S       +L   ++  +     ++     +    K+    I S ++        
Sbjct: 61  NRYYISLMMIKKKNLRPETKAQYRDAIMRLTSVI-EKPLNKMDEIDIDSYLDWYEKRNVA 119

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +K+  S+       +   F W  ++++++ NP  + E P ++      + +    + 
Sbjct: 120 AGGKKNQASTCNNERRYLSAFFTWMRKEKFMSYNPVEATE-PMKEVIKPIDYFRPAQIEQ 178

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240
                   + R   E L  +G R  +  +  + H+        I ++K+     + L + 
Sbjct: 179 LREGCVSLRDRAIIEVLRSTGARVGEIPQINIDHVDWATGDIMIMSEKSYKYRLLYLDEV 238

Query: 241 FMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
               L      +         +      ++  +      K            H +RK   
Sbjct: 239 ARYHLRKYLDSRTDDNEALFVWDKAPYNRLKKSGIRNAMKEVGKNMDCKVYPHKLRKTLG 298

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
               D G     +    G         Y
Sbjct: 299 VNLKDKGTDIGIIQEVMGHANPTVTSRY 326


>gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040]
 gi|99035697|gb|ABF62555.1| phage integrase [Ruegeria sp. TM1040]
          Length = 197

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 2/163 (1%)

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                     L FE  L +G R SD  R    H++     +   KT     +        
Sbjct: 33  YREHADGLALLIFELALGTGQRASDLTRMEWGHIEVGRIWVTQGKTNVRFWIPFTKRLSS 92

Query: 244 LLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           +LA     K  F + ++     N  Q           AG+ + S HG+R  +A   A+AG
Sbjct: 93  VLAGVDTSKSRFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGLRDSAAGELAEAG 152

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            T H++ A  G K++   + Y+KGA + RL I+       +  
Sbjct: 153 CTDHQIAAITGHKSLSMVQKYSKGASQKRLAIEAQNLREQIWG 195


>gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
 gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4]
          Length = 191

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 15/154 (9%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------IFSIKTQKTGTII 233
               +     E L  +G+R S+     ++ +                 +          I
Sbjct: 22  PLDFRNEAILEVLYGTGIRVSECSGIKLKDIDFELSVLLIRGKGNKERYVPFGHYAAVAI 81

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291
              +      L+       +  F+N+    + AT           ++ +  +   H +R 
Sbjct: 82  RDYMEKSRTPLMTKHKRIHDFLFVNHHGDPITATGIEYVLNQVIKRSSLTSDIHPHMLRH 141

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             AT   + GA    +    G  ++   + Y   
Sbjct: 142 SFATHLLNNGADMRTVQELLGHASLSSTQIYAHV 175


>gi|289643686|ref|ZP_06475798.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289506519|gb|EFD27506.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 413

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 114/374 (30%), Gaps = 60/374 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++  +   HG++    R       R       T +   +  L             R  P 
Sbjct: 19  YLGADGVWHGRVTVGVRDNGKPDRRHVRAKTETEVTRKVRKLEQERDAGTVRKPGR--PW 76

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++  ++ + ++    S++ N+   +       ++   G     ++  +HI S +   + 
Sbjct: 77  TVERWLTHWVENISAPSVSENTSDGYRVAVRVHLVPGLGAHRLERLEPEHIESLMRRMQA 136

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +   P++A Q L ++R     AVR+ +V  N     + P+   + + P++  ++QQ  + 
Sbjct: 137 SGSAPATAHQALRTLRTALGEAVRRGHVGRNAAALAKPPRVVEQEVEPYSVAEVQQLLTE 196

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------- 232
            ++  +    +   L  GLR  ++       +  +   I+ ++                 
Sbjct: 197 AAKR-RNSARWVLALALGLRQGEALGLRWADVDLDAGVIRVRRGRLRPKYRHGCVEPCGR 255

Query: 233 --------------------------------------ITVELPDGFMKLLAMTPIGKET 254
                                                    E  D          +    
Sbjct: 256 KPGFCPNKVQIRPDTKETKSRAGTRPIGLPDELVEILRRHKERQDKERAEAGDLWVDGGW 315

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313
            F     + +N       +KA    AG+ +   H  R  +AT+    G     +M   GW
Sbjct: 316 LFATETGRPLNPGTDYHAWKALVVAAGLRDARLHDARHTAATVLLLLGVPDRTVMGIMGW 375

Query: 314 KTVDQAETYTKGAD 327
            T      Y    D
Sbjct: 376 STDQ-RRRYQHITD 388


>gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 416

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            +++K       + ++   + + ++ +           D  +R++T+  IR      ++ 
Sbjct: 122 EDFKKLVEKEERSQSTYNKYITVYNHLTTFIKERYHRDDMAFRELTSDFIREFDFYLRYD 181

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             S+   +      +  L + A+++  +  NP    E    +T+      ++  +     
Sbjct: 182 LQSSHNTVWVYTMPVLSLAELAIKKGLIRDNPFQDYEINMEETDRGYILKEDVEKLMMCV 241

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   +   F F  ++GL  +D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PPHPRYELVKDLFIFSCFTGLAYADIKKLTRNNIQSFFDGHQWIISRRKKSDIASNVRLM 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K      N+      T  +          KA +      + H  R    T+ 
Sbjct: 302 EIPKRIIEKYQGTTRNEFIFPVPTNATCNTHIGKLVEKAEIITEQKVTFHTARHTFGTMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126]
 gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126]
          Length = 417

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQII- 103
              ++    + +  N   ++  TL    S+Y    +  + +  +   +   E YF++ + 
Sbjct: 90  EELISAEIIRNKLFNLEEEQQITLLSA-SKYHYDQNIHNFSTGTLQHYKVTERYFERFLS 148

Query: 104 --RKSGDFDYRKITTKHIRSGVESRK-HTP---------SSAIQFLTSMRVLFKWAVRQE 151
             +   D    K+  K +       +   P         +  ++ +   R +  +A + +
Sbjct: 149 TKKNLSDIAIEKVDYKFLLDFEAFLRAWKPKDHQKPIGHNGIMKHMCRFRKVLNYAYKMD 208

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSD 208
           ++   P         +       T E++   +    + ++    R  F F  Y+GL   D
Sbjct: 209 WITDTPFKKY-HISYEKSTRTYLTVEELSAIEVKELDIARLEQIRDIFIFSCYTGLSYID 267

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFFINNDKQKM 264
                  H+   I   K  +     T              L            N     +
Sbjct: 268 LFNLSKDHIVIGINGEKWIQYKRQKTSTPFSVPLLPKALELIEKYEDHPKAKENQLLPVV 327

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAET 321
           +  + + + K  A   G+ K  + H  R   AT      G     +    G   +   + 
Sbjct: 328 SNQKTNAYLKEIADLCGIKKQLTFHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQI 387

Query: 322 YTKGADRI 329
           Y K  +  
Sbjct: 388 YAKVVENK 395


>gi|309808625|ref|ZP_07702517.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809486|ref|ZP_07703344.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308168099|gb|EFO70225.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 01V1-a]
 gi|308170158|gb|EFO72193.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 373

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 38/358 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSP--R 65
             V K  T+ G I Y F+   G  I         +   +Y  A       +        +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   +  L +++  +    ++  ++   ++E Y   I  K G+    KIT   ++    
Sbjct: 65  QKQIKVNDLFTQWFDTYQ-TTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFSN 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
           +           L  +       +   Y+ +NP   +  PK+ T   R  +         
Sbjct: 124 ALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREEL 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------- 223
               K   S      L F  L  +GLR  ++       +  N                  
Sbjct: 184 DTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKY 243

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                +   ++ TV L     + L      ++                 +          
Sbjct: 244 IVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIY 303

Query: 277 ATKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +
Sbjct: 304 KQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSK 361


>gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5]
 gi|465416|sp|P22884|VINT_BPML5 RecName: Full=Integrase
 gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5]
          Length = 371

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 113/366 (30%), Gaps = 44/366 (12%)

Query: 14  ERTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPR 65
           +  R G+I   Y     G R      +++        A       +   TP ++      
Sbjct: 10  KTQRSGRIQASYVNPQDGVRYYALQTYDNKMDAEAWLAGEKRLIEMETWTPPQDRAKKAA 69

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               TL+    ++        LA  +R  +  +   +I    G+    ++T   +R+   
Sbjct: 70  ASAITLEEYTRKWLVE---RDLADGTRDLYSGHAERRIYPVLGEVAVTEMTPALVRAWWA 126

Query: 125 SRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  +A +     +R +   AV  + +A NPC      ++  +          +   
Sbjct: 127 GMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPC---RIEQKAADERDVEALTPEELDI 183

Query: 184 SFWSEGSQPRLAFEFLLYS------------------GLRCSDSCRAGVQHLQNNIFSIK 225
                    R+A   L ++                  G+      R G   + N I    
Sbjct: 184 VAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKIVVGN 243

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKA 277
            +   +   V +P    +++      +                  +++ + F+   K   
Sbjct: 244 AKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGY 303

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KN 335
            K G      H +R   AT +A AGAT  ELMA  G  T   A  Y   ++     I + 
Sbjct: 304 AKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQMASEARDEAIAEA 363

Query: 336 SRRISS 341
             +++ 
Sbjct: 364 MSKLAK 369


>gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   + S    + +         D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGIDIKEGAIHGYHSTRIHLQKFIQRKYKVSDLAFSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    +     V+  K   +  +   + + +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADLLLFDKVKISKGNKKLPKALDRGEFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLHFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TSVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|326790277|ref|YP_004308098.1| integrase family protein [Clostridium lentocellum DSM 5427]
 gi|326541041|gb|ADZ82900.1| integrase family protein [Clostridium lentocellum DSM 5427]
          Length = 311

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 86/267 (32%), Gaps = 13/267 (4%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127
           TLK L  ++ K+    +L+  +   +++ +  +     +    +I  + +R  +   +  
Sbjct: 15  TLKELYDDFEKNCRIRNLSSETIKYYQNCYHILCNYKPEVYLDEINNEFVRDYILYLQQT 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             P+S    L  +R +   A        + I      +  +      +          K 
Sbjct: 75  MKPTSVNCQLRGLRSICNHAFDLGLMPKLIIKQLKYDKEVRETYTEEQIKKLIKKPNLKK 134

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242
                 +  +   + + +G R        ++ +   N +  ++  K      + L     
Sbjct: 135 CGFVEYRNWVIVSWFIATGNRIGTVLEIKIKDVDLANQLVVLRHNKNRNQNIIPLCSSIC 194

Query: 243 KLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296
           K+L+     +     +  F   D  +++        +      GV+  S H  R++ A  
Sbjct: 195 KILSEYLQYRKGEADDYLFCAMDGSRLSKRSLQCSIQKYNRDRGVSIASCHAFRRYFAKQ 254

Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323
               G     L     WK++D  + Y 
Sbjct: 255 CVLNGVDIFTLQKLGNWKSLDVVKNYI 281


>gi|258508510|ref|YP_003171261.1| integrase [Lactobacillus rhamnosus GG]
 gi|257148437|emb|CAR87410.1| Integrase [Lactobacillus rhamnosus GG]
 gi|259649820|dbj|BAI41982.1| integrase [Lactobacillus rhamnosus GG]
          Length = 389

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/383 (12%), Positives = 114/383 (29%), Gaps = 52/383 (13%)

Query: 11  VTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           +   +   GK  +          + G  + +                 L  +    E   
Sbjct: 4   IRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRNLEKAVQNGELTV 63

Query: 63  SP--RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +P   K     K +  E+ KS        +   + + +   I+   GD    KIT + ++
Sbjct: 64  APNPVKVARKFKDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQ 123

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + V    K +P +  ++   +  +  +A  ++Y+  NP   +  P+ + +        D 
Sbjct: 124 TAVNKWFKQSPVAFKRYFVHINRILTYAELRDYITHNPARRIILPRVQDKIGSTNDFWDR 183

Query: 180 QQFKSFWSEGSQPRLAFEFLL-----YSGLRCSDSCRAGVQHLQNNIF------------ 222
           +Q + F++  +  R  ++++L     Y+GLR  ++     + +                 
Sbjct: 184 RQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGV 243

Query: 223 -----SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------- 269
                    +   +   V +    +  L    I +  +     +   +            
Sbjct: 244 HGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNR 303

Query: 270 ------SIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAE 320
                  +W         +    S H  RK   +    AG     +    G        +
Sbjct: 304 FRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQ 363

Query: 321 TYTKGADRIRLGIKNSRRISSVV 343
            Y +        ++ + +++  +
Sbjct: 364 IYARVHQEQE--VEAAEKLAEYL 384


>gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 304

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           + EY         + N+ IS+ +  +Q ++         +T+  IR  ++          
Sbjct: 2   LHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV    +  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLLH 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMAKKKPHVAESPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
 gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136]
          Length = 411

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 80/260 (30%), Gaps = 23/260 (8%)

Query: 90  NSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTS 139
            +   +E     +           D   ++I+   I           K   ++  +F+  
Sbjct: 131 ATYRKYEVTRRHLAEFIQSKYNVSDISIKEISPMFITDFELYLRTACKCGYNTTAKFMQF 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
            + +     R   + +N   +  + + +       T+++++          +    R  F
Sbjct: 191 FKRII-IIARNNGILVNDPFASYKIRLEKVDRGYLTEDEIKIILKKKMVSERLEHVRDLF 249

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F  ++GL   D       +++ +          T       D  + LL +  +  + + 
Sbjct: 250 IFACFTGLAYIDVAGLTQDNIRKSFDGNLWI--MTKRQKTNTDVNVPLLDIPKMILKKYK 307

Query: 257 INNDKQKM----NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMA 309
                 K+    +  + + + K  A   G+ K  + H  R   AT +    G     +  
Sbjct: 308 GKLPNGKILPVISNQKLNAYLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPIETVSK 367

Query: 310 TYGWKTVDQAETYTKGADRI 329
             G   ++  + Y +  +  
Sbjct: 368 MLGHTNIETTQIYARITNSK 387


>gi|327412825|emb|CAX67831.1| shufflon-specific dna recombinase [Salmonella bongori]
          Length = 383

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 98/301 (32%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR 120
              R K  +L   + +Y  +        + +  +      +      +    +ITT  I 
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHK-RGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T ++ ++   ++ E        F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPM 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L      LL    +       +      +++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARHLLQGMTVALSGNVFHY-----SSSGFKSAWRVALQRLNIVDLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++    YT   A ++   +   +R +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTHLRAYQLVSKLDARQRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|322391291|ref|ZP_08064761.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
 gi|321145717|gb|EFX41108.1| phage integrase family site-specific recombinase [Streptococcus
           peroris ATCC 700780]
          Length = 377

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/368 (11%), Positives = 111/368 (30%), Gaps = 48/368 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--KPTTL 71
            ++++G  I     G      +              AL      R      +      T+
Sbjct: 4   RKSKNGTWIADVSSGTNPITLIQRRIVRKGFKTKKEALEAERYLRSVELKEKNFGAKITI 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVESRKH- 128
             L    ++     +   +   + E+ +   I       D   K+T + I    E  +  
Sbjct: 64  DMLYQLLKEEDEINNRKKSYIDTQENNYNKHIKDYFSKVDNIDKLTYEDIYQFREHLREK 123

Query: 129 ---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                    +P++  + +  ++ +    +R+ Y   +P   +++   +   ++ WT ++ 
Sbjct: 124 NAKNSEKKLSPNTINKIIVLLKKILDVGLRKGYYKEHPVGLLKKLPIEKRKMQFWTVKEF 183

Query: 180 QQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
           + F S +        L F  L ++GLR  ++     + ++ +  +I   K+         
Sbjct: 184 KHFLSLFKNDEYNLELLFTVLFFTGLRLGEALALTWKDIEFSTSTIHVSKSMYVNKGEEH 243

Query: 231 --------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                 +     +   +L   +   ++     +    +      
Sbjct: 244 ISSTKTKSGTRRIIINKKLIETLEEWKQEQTERLREFSTDTEKLQIFQDSPITLTKNSIE 303

Query: 271 IWFKAKA-TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-- 325
             +K      + + K   H  R   A++  + G     +    G  ++    +TY+    
Sbjct: 304 KQYKKILSRDSSLKKIRIHDFRHSHASLLINQGEDYLIVKERLGHASITTTIDTYSHLYP 363

Query: 326 ADRIRLGI 333
           + +  L  
Sbjct: 364 SKQKDLAD 371


>gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
 gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1]
          Length = 103

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      KA A   G++K  S H  R   AT   +AG     +    G K V   
Sbjct: 24  HHLDPSGLQRAVKAAAKLVGIDKPVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDVKTT 83

Query: 320 ETYTKGADR 328
             YT   +R
Sbjct: 84  MIYTHVLNR 92


>gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 355

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 87/280 (31%), Gaps = 21/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVE------ 124
              ++ Y+K+             +E  +       G    + +I         E      
Sbjct: 76  GDFLAYYKKTLRKHDQK------WEFVYLHFCNFVGGKCSFEEIDVDLCNKFREYLLNAK 129

Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  + +SA+ + ++ R   K   R + +  N    +E+ + +       + E++
Sbjct: 130 QLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVEEL 189

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +      +    + A  F   + LR SD      + + +     K   T T  T     
Sbjct: 190 YRLAEMPCKIPILKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDI 249

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
             +   A+  IG          + +         K     AG+ K  + H  R+  AT+ 
Sbjct: 250 IPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQ 309

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
           A AG     + +    K++   + Y K  D   R      
Sbjct: 310 AAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 349


>gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEKIPYSYINRDTLLCYQSWLLGGGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              ++  +R ++  AV   E   +           +++  +   +E +++  +   E   
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLEDPS 132

Query: 192 PRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R           +SG+   D      +++++ I     QK+G +I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYYRQKSGALIQLEIPSGALRLLDE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                                              F+   K  A   G  +  +++ +R 
Sbjct: 193 LSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNHDLKLLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134]
 gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134]
          Length = 400

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 22/270 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            LI  +    HW +    S+ ++ +  +Q     GD +++ I  +++ +  +  K     
Sbjct: 118 ELILAFIAHNHWIN--DRSKNTYINGLNQYFGFLGDNNWQMIDARNVAAFRDYLKDNKEL 175

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKS 184
           +  +   +L++++ L K+ ++   +A     ++   K          + +          
Sbjct: 176 SAFTINSYLSAIKELVKFCLKNYQMADGQIKALNEVKEVKTLKTNTKKYYKNALPPDVLK 235

Query: 185 FWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIK------TQKTGTIITVE 236
               G   R A  + +  Y GLR  +        +  ++  +K        K    +  +
Sbjct: 236 RLIAGEDTRWAAYWGIMGYCGLRVKELQALKWADVDFDLDILKVLGKGQNTKEEVKLFGK 295

Query: 237 LPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                   L       +     N +    +       FKA     GV+    S H +R  
Sbjct: 296 AKVLLRAFLGEAKETVQGSLPKNFEICSYSYPTLYNHFKASLKAIGVDETKYSLHSLRHT 355

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
                 ++G     +       + D    Y
Sbjct: 356 CGQQMLESGNPLEFVQRQLRHASTDTTAVY 385


>gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745]
          Length = 335

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/335 (10%), Positives = 78/335 (23%), Gaps = 60/335 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKH 118
              T+   I ++ ++     L+  S+ ++ +   +      +             ++  H
Sbjct: 5   AAPTIADAIEDFFENLR---LSPRSKKTYRTAVTKFTEHLKERFDLDPETSPVTALSEDH 61

Query: 119 IRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------ 162
           +   V +                +A   L ++R L+ + V  +         +       
Sbjct: 62  VTDFVAALMPDDVRSPEEVSRMRTAQTNLAAVRKLYAYLVSYDLHPNLSTEKLRTRVAAM 121

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-----------GSQPRLAFEFLLYSGLRCSDSCR 211
            P+         T +  +  +   S              + R    FL  +G+R S+ C 
Sbjct: 122 MPRFTPPPPDVQTSDLDRIVEYVRSLPHEVDPDKELRRLKLRAMILFLYRTGVRVSELCG 181

Query: 212 AGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQK------ 263
              + +Q    +    +       TV       + L      +                 
Sbjct: 182 LRRRDIQLADGTASIYRAKGGKSRTVLFDSETAEALVAYWAARGDSGRGVGAFPAFSGRD 241

Query: 264 --------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313
                   ++              AGV    + H  R   AT           +    G 
Sbjct: 242 KVGVPGRAISPRTVEHIVAQLCVAAGVENPITPHSFRHGLATELVRRRVRESTVQTILGH 301

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
            +      Y                  +      P
Sbjct: 302 ASPTTTRIYVHKV----AAEVAEEYQEAFGPYRRP 332


>gi|307692298|ref|ZP_07634535.1| site-specific tyrosine recombinase XerC [Ruminococcaceae bacterium
           D16]
          Length = 342

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 17/210 (8%)

Query: 142 VLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEF 198
             +K+ + + + +  NP   ++ P+ K    R    ++  +  S        +       
Sbjct: 116 SFYKYLSSKAKLITENPMQDLDAPRLKKTLPRYLNLDESVELLSHVDGPNQVRDYCILTL 175

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------- 250
            L  GLR S+     V  ++ +       K      + L +     L    +        
Sbjct: 176 FLNCGLRISELIGLNVTDVRGDQLR-VLGKGNKERVLFLNEACRSALDDWMMERSTLTLL 234

Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306
                F    ++Q++         K   + AG++    S+H +R  +AT+    G     
Sbjct: 235 DQNALFVTPRNRQRITRAAVHKLVKKHLSAAGLDSTKYSSHKLRHTAATLMLQNGVDVRT 294

Query: 307 LMATYGWKTVDQAETYTKGA-DRIRLGIKN 335
           L    G   ++  + YT    D +R   + 
Sbjct: 295 LQEVLGHDHLNTTQIYTHVDNDDLRTAARA 324


>gi|256375070|ref|YP_003098730.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255919373|gb|ACU34884.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 399

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 86/369 (23%), Gaps = 51/369 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R  +    F    GR     +P               +   +     P     T      
Sbjct: 24  RGMRYKVRFTGPDGRERSKAFPDRQKKRADDFLHEMENDKNKGTYLDPDAGKITFCDYAE 83

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132
            +    +  +   ++R   E      +    GD + R I    I++     +      + 
Sbjct: 84  RHW--INARTFDESTREGVEFRLKLHVYPYFGDTELRLIQPSTIQAWDRKLQQKGLAETY 141

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  +F  A+  E +  NPC      K + E  +     + +        G   
Sbjct: 142 RRGIFANVSAIFTAAIDDERLRRNPCNGKSVVKPRGEYPKIVPWPESRVHSVRTELGESY 201

Query: 193 RLAFEFLLYSGLRCSDSCRA---------------GVQHLQNNIFSIKTQKTGTIITVEL 237
           R+A       GLR  +                       +          K G    V L
Sbjct: 202 RIAVNLGAGCGLRQGEVFGFSADDVDESEGVIHVLRQVKIVRGKMVFAPPKHGRSRDVPL 261

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFS--------------------IWFKAKA 277
                + L           +    Q       +                      +K   
Sbjct: 262 APSVAQALEAHTKRFPPLPVTLPWQVPEGKPVTVPLMIYTREAKQLYRHSFNHHVWKPAL 321

Query: 278 TKAGV--NKS---AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA----D 327
             AGV         H +R F A+   D G +   L    G          YT       +
Sbjct: 322 RAAGVAEPGRAEGFHALRHFYASSLLDEGVSIRALAEYLGHGDPAFTLRVYTHLMPASHE 381

Query: 328 RIRLGIKNS 336
           R R  I   
Sbjct: 382 RTRAAIDKV 390


>gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 406

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     +   + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 VECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|126698480|ref|YP_001087377.1| phage integrase [Clostridium difficile 630]
 gi|115249917|emb|CAJ67737.1| putative phage integrase [Clostridium difficile]
          Length = 372

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 100/362 (27%), Gaps = 38/362 (10%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R  K   Y         +I+                L                 TTL 
Sbjct: 9   RKRGEKFHVYVEYIEEMTGKIKQKSYGSYEKKKDAEKHLIEIKSTINSNKFITPSKTTLV 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHT 129
               +Y  S    + +  + I+ +S+    I     D     I    I++ + +     T
Sbjct: 69  ERCYKYIMSNE-KNWSPYTVINRKSWVKNYIEPFFKDTKLIDINPVLIQTFINTTFNNCT 127

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            SS+      +  + K A R   +  NPC  V+ P ++          +           
Sbjct: 128 FSSSKIRYRFISSVLKEAYRLREINENPCDFVKLPHKENSSKIEIYNREEALLLIEKLNN 187

Query: 190 SQPRLAFEFLL--------YSGLRC--------SDSCRAGVQHLQNNIFSIKTQKTGTII 233
           S   +    +L         +GLR         S S    + +  N I   + + + +  
Sbjct: 188 SNIEIPILLMLTLGLRLGEATGLRWTDVDLNIGSVSVSQTLIYANNKIEFKEPKTSKSRR 247

Query: 234 TVELPDGFMKLLAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           T+  PD  ++ L +                      +N D            F     K 
Sbjct: 248 TLSAPDELIEKLKIEKLRQNKLKLQGILKNENNLVCLNKDYNPFLPATLRKSFHRFIKKN 307

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI-RLGIKNSR 337
            +     H +R  +A++    G     +    G   +      Y+   + + +    N  
Sbjct: 308 NLKNIRMHDLRHTNASLLLLGGTNMKVVSERLGHTDIQITMNRYSHVLEEMDKKASDNLS 367

Query: 338 RI 339
           +I
Sbjct: 368 KI 369


>gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
 gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380]
          Length = 333

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 84/303 (27%), Gaps = 53/303 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPS- 131
           L+ + R+   +   A  +  ++  +  + IR        + +    I S +       + 
Sbjct: 15  LMDQVREVLRYHHYAYRTEQNYCQWIVRFIRFFDAKIHPKDMGKGEIESFLSHLATEGNV 74

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA     ++  +     R     ++  L   R KRK       ++ ++Q+  +  +    
Sbjct: 75  SAATQRQALNAIIFLYKRVLDQPVDEILEHIRAKRKRRPPIVLSQGEVQKVLNQMT--GT 132

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
             L  + L   GLR  +  R  +Q L        ++  K G   T   P    + L    
Sbjct: 133 HLLMTQLLYGGGLRLMECIRLRIQGLDFERNLIYLRDGKGGKDRTTIFPASMKRALQKHV 192

Query: 250 IGKETFFINN---------------------------------------------DKQKM 264
              +     +                                              +  +
Sbjct: 193 EKVKQLHEQDLADGYGTVFLPHALAKKYPKAPQEFGWQYLFPARGRSTDPRSGKIRRHHV 252

Query: 265 NATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             +      K    +AG++K    H  R   AT   + G     +    G   V   E Y
Sbjct: 253 LESGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIY 312

Query: 323 TKG 325
           T  
Sbjct: 313 THV 315


>gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47]
          Length = 446

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 82/308 (26%), Gaps = 54/308 (17%)

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAV 148
           +  ++  +  + ++        ++    +R+ +       +   A   L   +    +  
Sbjct: 140 TEKAYTGWVIRFLQMFPGRSLEELGEVEVRTFLNDLVANESGGVAASTLGQAKSALLFLF 199

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           ++        +   +  +  +     T ++++  +         RL F+ +  SGLR  +
Sbjct: 200 KETLGRELNFIEHSQATKPKKLPVVLTIDEVK--RVRKHVTGTRRLMFDLMYGSGLRHKE 257

Query: 209 SCRAGVQ--HLQNNIFSIKTQKTGTIITVE------------------------------ 236
             R  ++   +      ++  K                                      
Sbjct: 258 CRRLRIKDLQIDEGTILVRNGKGEKDRVTVLPGRVRQEVIEQIEVCRVRHLQDLEMGEGE 317

Query: 237 ---------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                              +  L        +       +  ++    S  F      +G
Sbjct: 318 VFLPDALKRKYPAESRKFRWQWLFPSPRTRMDPRSGRYWRHHVSEEFLSKSFAKALEASG 377

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRR 338
           V  N   H +R   AT   + G+    +    G   V     Y    +R  L +K+   +
Sbjct: 378 VLKNAVPHTLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNRPGLSVKSPLDQ 437

Query: 339 ISSVVDSD 346
           + +  D +
Sbjct: 438 LEATDDDE 445


>gi|227358498|ref|ZP_03842823.1| integrase [Proteus mirabilis ATCC 29906]
 gi|227161209|gb|EEI46283.1| integrase [Proteus mirabilis ATCC 29906]
          Length = 316

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 10/310 (3%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLI 75
           R G I YY      +   +          A  + L    PK   ++        TL   +
Sbjct: 2   RKG-IYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKEPLVDRINNVHCVTLHEWL 60

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             YR   +   L   +   +ES    I     D     +T + + + +       + A  
Sbjct: 61  DTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFISEYPKK-AMAKL 119

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
             ++M   F  A+    +  NP    + P + +      + E+ +          + R  
Sbjct: 120 LRSTMLDAFNEAIADGVIKENPVSVTK-PPKTSVQRSRLSLEEFKYALEHT--NDKYRHM 176

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKE 253
           F     +  R SD        ++N+   +   KTG+ + + L      +           
Sbjct: 177 FLLAALTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESIGYSIKDVLNLM 236

Query: 254 TFFINNDKQKMNATQFSIWFKAKA-TKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
               +       A      F            + H +R  SA    +   +A       G
Sbjct: 237 NRNSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIRSLSA-RLYEEEKSAEFAKKILG 295

Query: 313 WKTVDQAETY 322
            K++   + Y
Sbjct: 296 HKSMRMTDKY 305


>gi|291281088|ref|YP_003497906.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290760961|gb|ADD54922.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|320660256|gb|EFX27766.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 386

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAQDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVECGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  T+E+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTEEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
 gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787]
          Length = 413

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 102/395 (25%), Gaps = 76/395 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    GRR  +      T        +       +   +      T+ ++   Y
Sbjct: 24  GKYVYTYTDTLGRRRSIYSKDIKTLREREEQLIKDQLDGLDTYVAGSA---TVNFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQ- 135
             +     L   +R +++  +D+      G      +    +        K         
Sbjct: 81  ISTK--SELRATTRTNYKYMYDRFVRDGFGKKKIAAVKFSDVLQFYHHLLKDKKIQVNTL 138

Query: 136 --FLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
               T +   F+ AVR   +  N          + P R        T E  + F  +  E
Sbjct: 139 EIIQTVLHPTFQLAVRDNIIRNNPSDGVMAQIKKLPGRNHGIRHALTLEQQRAFIRYVEE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGT 231
             +       F+FLL +G R  ++     + +                +    +      
Sbjct: 199 NEKFESWVTLFKFLLGTGCRIGEAVGIRWEDIDFKKRIISINHSLVYYSREYKEHSTCSF 258

Query: 232 IITVELPDGFMKLLAMTPI------------------------GKETFFINNDKQKMNAT 267
            I++   +  ++++ M                                F N      N  
Sbjct: 259 SISLPKTEAGIRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVFSNRFGNVHNPQ 318

Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310
             +   K                         + S H +R    +   +       + + 
Sbjct: 319 AINRAIKRIYEAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCENETNLKVIQSV 378

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G   ++     Y +  +  +   ++ + ++  +D
Sbjct: 379 MGHADIETTMDIYAEVTETKK--YESIQELARKLD 411


>gi|2689564|gb|AAC28969.1| integrase [Staphylococcus aureus]
          Length = 406

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 109/400 (27%), Gaps = 71/400 (17%)

Query: 13  KERTRHGKIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K + +  K  YY +         RR+   L    + +   A          K        
Sbjct: 7   KNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTT 66

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            K  T      E+ ++          +  +  S  + + +    D    KIT  + +   
Sbjct: 67  LKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVF 126

Query: 124 ESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ERPK 165
           +            +  L+  + +F++  R   +     L                 +R K
Sbjct: 127 DEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNK 186

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQN 219
                      +D+         G   R      L  EF   +G+R  +      + +  
Sbjct: 187 YLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDF 246

Query: 220 NIFSIKTQKTGTI--------------------ITVELPDGFMKLL-------------A 246
           +  S+    T                        T+ L     ++L              
Sbjct: 247 DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G + 
Sbjct: 307 DGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSL 366

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             +M   G          Y+   ++  +      ++  + 
Sbjct: 367 KAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQLK 404


>gi|330832258|ref|YP_004401083.1| integrase family protein [Streptococcus suis ST3]
 gi|329306481|gb|AEB80897.1| integrase family protein [Streptococcus suis ST3]
          Length = 385

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 107/374 (28%), Gaps = 54/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T+ G + YY R+G   +G +         +   A    L     +  +
Sbjct: 5   KTKYP-NIFTYETQKG-LRYYVRRGYFVNGDKKEFSKSGLRSLKDA-QRILRDIEERIYH 61

Query: 61  INSPRKKPTTLKWLISEY----RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKIT 115
                    TL      Y     K+  W   ++ +    + +       K G+   +KI 
Sbjct: 62  DEMDVNLELTLNEYWEIYSAKKEKTGQWNDTSIYTNAGIYRTMIK---EKWGNLPLKKIN 118

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                  +     ++  +S +     +  +   AV+   +  N    +   + + E +  
Sbjct: 119 RNDYEEHLAEMLGQYRRNSVLTSNRLLNSILNDAVKNGNLRQNKLSGIYLGESELEPLNK 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             K D  Q     +E       F F+  +  GLR  + C      +  +  +        
Sbjct: 179 ELKIDDFQTWIKTAEELLSTTHFAFVYLTIFGLRRGEVCGIRFMDVTFDSNNRAVLNIRD 238

Query: 232 IITVELPDGFMK------------------------------------LLAMTPIGKETF 255
             +    DG  +                                    ++          
Sbjct: 239 SRSNRTKDGAGRTKTESSVRYVVLNDRGSELLLQIMKTAKQVKKKADVIVEQEKDYLSIR 298

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             NN          +  FK  + + G+  + H +R F  T S  AGA   ++M   G  +
Sbjct: 299 IKNNKYYLERPAFLNKIFKRVSEECGIYITPHIMRHFFTTQSLIAGARPEDVMHFLGHAS 358

Query: 316 VDQAETYTKGADRI 329
           +   + YT   +  
Sbjct: 359 LQTTKQYTHIKEER 372


>gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 390

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 90/331 (27%), Gaps = 25/331 (7%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
                 R                       +R    +P K+          Y       +
Sbjct: 64  PRTPEERQKNKETLALAAEIRIDKEKVLVARRYDKAAPVKQKINFLEFFDAY-----VKN 118

Query: 87  LAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRSGVESRKHT--PSSAIQF 136
                    E    +              +    ++T + +   V+  +       A  F
Sbjct: 119 YKKKDIRMMEGCLRRFRGFLAESYPSMQTNIKPDQMTKEMMIKFVDYLQQHSFGEGARGF 178

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLA 195
               + + K+A+ Q+ +  NPC  V      T   +   + E++ Q  +   +    R A
Sbjct: 179 FQRFKKVIKYAIDQDILLKNPCTGVPCVVDDTALRKDVLSLEEIAQLANTPYQNMDVRRA 238

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLLAMTPIGK 252
           F F LY+GLR  D       ++     +I+  +           +       L      +
Sbjct: 239 FLFCLYAGLRYCDVVDLKYSNVDYANKTIRFDQNKTTGHSTHSIVTIPLSNTLLKLIGER 298

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA-DAGATAHELMA 309
                       + T      +    +AG+ K  + H  R   A     +       + +
Sbjct: 299 PEKDGPIFTLP-SHTGCLKALRIWVARAGIEKHITWHCARHSFAVNLLGECHTDIKTVAS 357

Query: 310 TYGWKTVDQAETYTKGADRIR-LGIKNSRRI 339
             G   +   E YT+  D ++   +     +
Sbjct: 358 LLGHSGLKHTEKYTRAVDSLKEKAVNALPEL 388


>gi|168233685|ref|ZP_02658743.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471329|ref|ZP_03077313.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194457693|gb|EDX46532.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332273|gb|EDZ19037.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 359

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 101/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTG 53
           M+       LP  +T    ++ +  Y+      + I L        +   + A       
Sbjct: 1   MSQKKYDANLPKNLTYR--KNDRAFYWRNPVTKKEIALGQIARRDAVAQAIEANNYIYQN 58

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            TP        R    T+   I  Y        LA N+     +    +  K G+    +
Sbjct: 59  YTPAALIEKLKRSDTFTVSMWIDRYNVLLKRRDLAANTYKIRGNQLATVREKMGEMILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ +  +  NP      P+ K    
Sbjct: 119 VTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +         LA +  L +G R  D        + +    +   KTG 
Sbjct: 179 RLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAFPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GV       + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KISGVKFSDNPPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803]
 gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803]
          Length = 412

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 22/271 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHI----RSGVESRKHT 129
           +S      A  +   + +    +           D   + +  K I         +RK  
Sbjct: 130 ESLIGKDFATGTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGLEYYLKTTRKCA 189

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +SAI+++T+ + + + A   +++  +P L  +   +        T+E++Q+      + 
Sbjct: 190 HNSAIKYITNFKKIIRIAHANDWIDKDPFLHWKGKLKI-VEREFLTEEEIQKIIDLHLKM 248

Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGF 241
            +    R  F F  ++GL  +D  +     +            K  KT T   + +    
Sbjct: 249 ERLDQVRDIFIFCCFTGLAYADVKKLNRGDISVGADGEEWVKTKRSKTDTRSNIPILPIA 308

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
             ++      +     +     ++  + + + K  A  AG++K  + H  R   AT    
Sbjct: 309 KTIIEKYKDNELLKEKDLVLPVLSNQKMNAYIKEIANLAGISKNLTFHLARHTFATTVTL 368

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G     +    G   +   + Y K  D  
Sbjct: 369 TNGVPIESVSKMLGHTNLKTTQHYAKILDMK 399


>gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)]
          Length = 297

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  +N T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHINETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 285


>gi|282598730|ref|YP_003358821.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300861304|ref|ZP_07107391.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307290877|ref|ZP_07570768.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|258598100|gb|ACV83357.1| phage integrase protein [Enterococcus phage phiEf11]
 gi|300850343|gb|EFK78093.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498077|gb|EFM67603.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
          Length = 378

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 103/370 (27%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    +K  +L+
Sbjct: 8   NGKYKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKDQKKVSLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 67  NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 126 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEREVYQLLS 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 186 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+      +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVEIIEELILEREIKFKEQTNYLFVGKTGNPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 366 KTNLVEALNK 375


>gi|284990058|ref|YP_003408612.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284063303|gb|ADB74241.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 308

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 94/290 (32%), Gaps = 21/290 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127
              L  ++  S      +VN++  +    +++     D       +I  + + + +    
Sbjct: 15  WAALRRDFAISMRAEGKSVNTQRVYLRAVNRLGAWCVDMQRGGPTRIRRQDVMAFLADMS 74

Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +P +      +++  F W VR+E +  +P   +  P      +   T+E ++Q  + 
Sbjct: 75  ETWSPGTRNLVYRALQQFFGWMVREEEIEKSPMAGMRAPTAPETPVPVLTEEQLRQLLAT 134

Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238
                  G +          +G R  +      + +     SI+    G+ I V      
Sbjct: 135 CCGKTFTGRRDNALIRLFTDTGCRLGELSGLKFEDVDLTDQSIRVLGKGSRIRVVPFGAR 194

Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV-NKSAHGVR 290
                 + L +               + +      +  ++  + +  + G+ N  AH  R
Sbjct: 195 TAQAMGRYLRVRERSAHASRPELWLAEKDRGVLGYSGVTLMLRRRGRQIGIANLHAHQFR 254

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             +A      G +  +LM   GW++      Y       R      RR++
Sbjct: 255 HTAAHRWGANGGSETDLMRLMGWRSPQMLRRYAASTADER-ARDAHRRMA 303


>gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 345

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 85/321 (26%), Gaps = 43/321 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R           A+ +          ++   + K   L  LI  + +       
Sbjct: 24  KRGKRVR-KKFATKGEALAFENYTLQKIEDSPWLGQGKDKRR-LSDLIHLWFERHGI--- 78

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSS 132
              +       +S         G     + T +   +    R            + +P +
Sbjct: 79  ---TLRDGEKRKSAMLWADECMGSPMATEFTAQLFTAYRAKRLDGHFARTKRVTQVSPRT 135

Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEG 189
                     +F    R  E+ A NP  +V + + +   +   T E + +       S  
Sbjct: 136 MNLEHAYFLAVFNELKRLGEWDAPNPLENVRQFRTEESEMAYLTGEQIDRLLEESRHSSA 195

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
               +     L +G R  ++ +     +     +    K     T+ L    +  L    
Sbjct: 196 KDLEMIVRICLSTGARWGEAEKLKRSQIGAGKVTFIKTKGKRNRTIPLDPAIIAELPKKN 255

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAH 305
               +                  F++   +AG+   A    H +R   A+     G    
Sbjct: 256 GVLFSPCYY-------------AFRSALERAGIELPAGQLTHVLRHTFASHFMMNGGNIL 302

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 303 VLQKILGHTDIKMTMRYAHFA 323


>gi|119963826|ref|YP_947503.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119950685|gb|ABM09596.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 304

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 23/291 (7%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +  TT++   + + K   + +   ++     ++  +I    G    + +    I++    
Sbjct: 3   EAQTTVREWSTTWLK--GYENNRPSTVRQARTHIKRINGDFGSRALKSVRPSEIKAWTAR 60

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   S+     + +  LF  AV    +  +P      PK   +     T   +   
Sbjct: 61  LSDEGLADSTVYALHSRLSQLFADAVHDGLLPKSPVSRRTAPKAGKQRAYVATTAQVWAL 120

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------T 231
                 G QP  A     ++GLR  ++    V  +      I                  
Sbjct: 121 HDAMPSGLQP--AILLAAFAGLRIGEAVALRVSDVDFMRGIITPAIQYPGVELKTEESKN 178

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVN--KSAHG 288
            I V         +     G ET   N   + ++  +   +F+   +   G+      H 
Sbjct: 179 PIPVPQNLCLELSVNHARWGSETLVTNEWGRSISPHRVEHYFRDARSSVKGLPEGFRFHD 238

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSR 337
           +R + A++    G     +  +    +     +TY     D+         
Sbjct: 239 LRHYFASLLIAQGLDVKVVQKSLRHSSAKTTLDTYGHMWPDKEETARAAVA 289


>gi|71902101|ref|ZP_00684136.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728132|gb|EAO30328.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 263

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 9/232 (3%)

Query: 99  FDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
              +           I +  I   + +++ + + S+A ++L  +R + + A         
Sbjct: 17  LRWLASHFDGKKLAAIDSDLILRVATLKAAETSASTANRYLALIRSILRRAFDIWLWIDR 76

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
               +  P+     +R  T    +   S        R    F L +GLR ++  +     
Sbjct: 77  CPHILLFPEPTK-RVRWLTPVQARSLLS--ELPLHQRAMVIFALSTGLRQANVLKLRWDQ 133

Query: 217 LQNNIFSIKTQKTG-TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWF 273
           +      ++                 +  L       G+   ++     +      +  +
Sbjct: 134 VDLVRKVLRIPADQAKGRQAIRIPLSLHALQVLQAQRGQHHEWVFTYCGRSIRWVNTRAW 193

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                +AG+ N   H +R   A+  A AG   + L    GW++      Y  
Sbjct: 194 HRALQRAGIQNFRWHDLRHTWASWHAQAGTPLYVLQDLGGWQSESMVRRYAH 245


>gi|218296683|ref|ZP_03497401.1| integrase family protein [Thermus aquaticus Y51MC23]
 gi|218242996|gb|EED09529.1| integrase family protein [Thermus aquaticus Y51MC23]
          Length = 416

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/356 (9%), Positives = 85/356 (23%), Gaps = 51/356 (14%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
                GR  +L     +                R  +  P     T++     + +    
Sbjct: 29  HDPKTGRPKKLTRSFPTKREAEAWRQEMALKHFRGLLAPPEA--ITVRDFAQSWLE-RKA 85

Query: 85  GSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVESRKHTP---SS 132
             +   +   +       +            G    + +  + IR+ ++   +      +
Sbjct: 86  REVRPRTLFLYREELAYALPSLEDPQAKDPLGRARLQAVNPRDIRAVIDGLLNRGLSLRT 145

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------W 186
             +    +  +F+ A+  E VA NP   V+      +      +                
Sbjct: 146 VKKVREKLNAIFEEALALELVARNPVAPVKVRGGLEQEREKPGRTLETWEIEALLAALDA 205

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------- 231
               +  L     L  GLR  ++     + +      +  ++T +               
Sbjct: 206 HPDPRTALVLRLCLSCGLRKGEALGLQWEDIDLEKGLLYVRRTWSFDGARTAISDPKTAS 265

Query: 232 ------------IITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKAT 278
                              + + + L   P      F   + ++ +     +        
Sbjct: 266 GRRAVPIPSKTLARLESYREWWRERLGSYPPPSFWVFPGVNGQEPLGYNTPNRALTRILK 325

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
           + G+     H +R    ++    GA    +    G  +       Y       R  
Sbjct: 326 RLGLPPARVHDLRHTYGSMLLARGAPVELVSERMGHTSPSITFNNYRHMFSEERQA 381


>gi|54296171|ref|YP_122540.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris]
 gi|53749956|emb|CAH11341.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris]
          Length = 402

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 28/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L+ +Y   A   +L  ++   +    +  +    G    R+++   IR+ +   
Sbjct: 92  KATTAELLQDYMAIAE-RTLEASTYNGYRKVCETHLYPAFGKIPIRELSPVIIRNWITGL 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184
             T  +    LT +R +   A+    +  NP   +   +   K      W  +   Q + 
Sbjct: 151 NVTVKTVRNILTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSKSDWEVDPFDQDEI 210

Query: 185 FWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQKT 229
                    Q R  F+F  +SGLR S+        +     +++            T+  
Sbjct: 211 KAILDAATGQARNLFQFAFFSGLRTSELIALEWNDIDWLKGTVRVSKAVVLKQEKGTKTK 270

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGV 282
             +  V L       L                     T +          +     KAGV
Sbjct: 271 SGVRDVLLLPPAFDALKNQKAFTYLEGSRVFYNPRTNTPWETDGQIRKTCWTHLLKKAGV 330

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
                +  R   A++   AG     L    G +  +   + Y +
Sbjct: 331 RYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGR 374


>gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 413

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 106/395 (26%), Gaps = 76/395 (19%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK +Y +    GRR  +   +                 + + +++      T+ ++   Y
Sbjct: 24  GKYVYTYTDTLGRRRSI---YSKDIKILREREEQLIKDQLDGLDTYVAGNATVNFVFDRY 80

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR-KHTPSSAIQ- 135
             +     L   +R +++  +D+ +R   G      I    +        K         
Sbjct: 81  ISTK--SELRATTRTNYKYMYDRFVRNGFGKKKIATIKFSDVLQFYHHLLKDKKIQVNTL 138

Query: 136 --FLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
               T +   F+ AVR   +  N          + P R        T E  + F  +  E
Sbjct: 139 EIIQTVLHPTFQLAVRDNIIRNNPSDGVMAQIKKLPGRNHGIRHALTLEQQRAFIRYVEE 198

Query: 189 GSQPRLA---FEFLLYSGLRCSDSCRAGVQHL--------------QNNIFSIKTQKTGT 231
             +       F+FLL +G R  ++     + +                +    +      
Sbjct: 199 NEKFESWVTLFKFLLGTGCRIGEAVGIRWEDIDFKKRIISINHSLVYYSREYKEHSTCSF 258

Query: 232 IITVELPDGFMKLLAMTPI------------------------GKETFFINNDKQKMNAT 267
            I++   +  ++++ M                                F N      N  
Sbjct: 259 SISLPKTEAGIRIIPMMDTVYEALKKEYAFQEENGFNETEIDGMTGFVFSNRFGNVHNPQ 318

Query: 268 QFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMAT 310
             +   K                         + S H +R    +   +       + + 
Sbjct: 319 AINRAIKRIYEAYNAEEVVKAAKEKREPILIPHFSCHHLRHTFCSRFCENETNLKVIQSI 378

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            G   ++     Y +  +  +   ++ + ++  +D
Sbjct: 379 MGHADIETTMDIYAEVTETKK--YESIQELARKLD 411


>gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 82/295 (27%), Gaps = 36/295 (12%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITT 116
              T   L+ E+         +L+  +  S+   F  ++R + D             ++ 
Sbjct: 5   TAPTFAGLVQEFFTDYMVQQRALSPRTVASYRDTFVLLLRFAEDKLRLPAHGMTMTDLSA 64

Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           + +   ++  +        S    L ++R   K+A R++   +    +      K    R
Sbjct: 65  RFLADFLDHLEAQRHNCVRSRNVRLAAVRAFLKFAARRDPANLGVIENALAVPMKRFERR 124

Query: 173 PWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225
                  +Q  +          G + RL    +  +G R S+     V  +     +   
Sbjct: 125 MVGFVPHEQMLAVIDVASDTWIGQRDRLMLTLMFNTGARVSEIIGVHVADVVLGPSNSIR 184

Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKAT 278
              K     ++ L     + +             +          M     +   K    
Sbjct: 185 LHGKGRKQRSLPLWKSSARAVRDWLHLNPQLGQESPLLPTRDGRAMTRANVAQRLKLAVK 244

Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A V          S H VR  +A     +G    E+    G ++      Y + 
Sbjct: 245 VASVKHAQLKTMSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEA 299


>gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 410

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 100/369 (27%), Gaps = 40/369 (10%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-----STP 56
            L +PP +   K     GK +   R       R            Y   +       +  
Sbjct: 40  KLDVPPRLWDVKNSRASGKSVEAQRIN-----RTVDKIRVDVNRRYQELMQTDGYVTAAK 94

Query: 57  KREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKS------G 107
            ++       K  TL  L  ++          S A  +   + +    I           
Sbjct: 95  LKDTYLGIGVKQETLLKLFEQHNAEFAKKVGHSRAQGTYQRYATVCKHIREFLPHTYKRE 154

Query: 108 DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D   +++    I          +K   ++   ++  ++ +   A     +  NP      
Sbjct: 155 DIPLKELNLSFINDFEYFLRTEKKCRTNTVWGYMIVLKHIISIARNDGRLPFNPFAGYIN 214

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
              ++      T+ ++Q       +  Q    R  F F +++GL  SD        LQ  
Sbjct: 215 -SPESVDRGYLTQAEIQTLIDTPMKNGQHELVRDLFVFSVFTGLAYSDVRNLTADCLQTF 273

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAK 276
                   T         +  ++LL +     E +       +     + T  +   K  
Sbjct: 274 FDGNLWIIT--RRKKTNTESNIRLLDVPQRIIEKYKGMTRDGHVFPMPSNTTCNKILKEI 331

Query: 277 ATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
             + G       H  R  +AT      G     +    G   +   + Y K   +   R 
Sbjct: 332 GRQCGFKVRLTYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITAQKISRD 391

Query: 332 GIKNSRRIS 340
               S ++ 
Sbjct: 392 MEALSHKLE 400


>gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
 gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5]
          Length = 393

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 22/276 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK------- 127
           +Y K      +   SR          ++         R++  K+I   VE  K       
Sbjct: 107 DYIKYLADKDIEKTSRKVSMYTLIYHLQHYDKMGIRLRQVDKKYILGFVEYLKTATQKHC 166

Query: 128 -----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDM 179
                 + ++ + +          AV  E +  NP   ++    PKR+       T +++
Sbjct: 167 KSVKNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDEL 226

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237
           +         +  + AF F  + GLR SD       +L+                  +  
Sbjct: 227 KILSQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILS 286

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                + L   P+  +        +  ++  + +      A KAG+  + + H  R   A
Sbjct: 287 LPLSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 346

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 347 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 382


>gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 407

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A  +   +++                D + +KI    +          R    +SA+
Sbjct: 126 KEFAQGTLTRYKTCLKHTKDFLKWKYSITDIEIKKIDYAFLNDFEFFLRTERSCNNNSAV 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-- 192
           +++ +   + +  +   ++  +P ++    K          +++++   +      +   
Sbjct: 186 KYIKNFGKIVRICLANGWIERDPFMNYHS-KFNEVTRMFLNEQEIEVLFTKDFTNERLSL 244

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246
            R  F F  ++GL   D+ +   Q++      +     K QKT T   + +     K++ 
Sbjct: 245 VRDIFLFSCFTGLAYIDTQKLTYQNINLGLDGSQWIYTKRQKTKTTSNIPILSQTEKIIK 304

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGAT 303
                            ++  + + + K  A   G+NK  + H  R   AT      G +
Sbjct: 305 KYKNHPACLNSGKLLPILSNQKMNAYLKEIADLCGINKELTYHIARHTFATTVTLSNGVS 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G K++   + Y K  D  
Sbjct: 365 IESVSKMLGHKSIKTTQHYAKILDSK 390


>gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
 gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC
           43183]
          Length = 333

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T  +++Q 
Sbjct: 116 HSNRPISLNSASGYYSTFRGLLKIAYRDKWFCENINDYLDKIEPQDVKKEYLTLNEVKQL 175

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 176 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 233

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +         T       + +  +  +   K+   KAG+    + HG R   A I    
Sbjct: 234 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISL 293

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 294 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 331


>gi|153006817|ref|YP_001381142.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030390|gb|ABS28158.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 365

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 96/307 (31%), Gaps = 20/307 (6%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
           +R+R+            ++ L     +  + +   +  TT++     +       + +  
Sbjct: 28  KRVRVKKIPSQKHAKMLLAKLEIDAFEGRWFDRQLEAKTTVEDCWKAWEPITRRDNDSWR 87

Query: 91  SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMR 141
           S +        ++   G     K+T K +    E R            P +  + +  ++
Sbjct: 88  SDVDRAR---HLVEHLGSRRAAKLTRKDVEEYREKRFEETTRRGGPPAPGTIDREIALLK 144

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
               +A+    +  NP  +V                 +++          P    EF   
Sbjct: 145 RCINFAIECGTLVRNPIAAVPLLNEPNTRDMVLKPVMLERILKAAPPTFAP--VIEFDYE 202

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +GLR ++      + +   +  I+      KT     V L    +++L  TP    + ++
Sbjct: 203 TGLRKTELRFLRWEQVDLGLGCIRLSAKETKTNEARVVYLTSRALEILRATPRQLHSPYV 262

Query: 258 NNDKQKMNATQ-FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             +          +   +    +AG      H +R+   T +  +G     +M   G KT
Sbjct: 263 FVNPDTGRPWSEHNKMLRRACERAGYAGIWFHDLRRSFVTNARRSGVPESVVMKLSGHKT 322

Query: 316 VDQAETY 322
               + Y
Sbjct: 323 RSVFDRY 329


>gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1]
          Length = 371

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 94/343 (27%), Gaps = 65/343 (18%)

Query: 69  TTLKWLISEYRKSAHWGSL--------AVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
           TTL  LI  Y ++A  G L          ++  + +   + +     G      I  K I
Sbjct: 17  TTLNELIDRYLEAADAGILVGRAGTPKKASTIETDKYRVNALVRPALGKLALADIDRKVI 76

Query: 120 RSGVESR-------------KHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPC 158
              +                K+   +        A + +  +  +  + V++  +  NP 
Sbjct: 77  EKFMNDVALGKIKSIGAKTAKNRGRTNTRGGRGAATRTIGLLGGILAFGVKEGEIPSNPV 136

Query: 159 LSVERPKRKTEGIR----------------PWTKEDMQQFKSFWSEGSQPRLAFEFL--- 199
           + ++R K                              +  +  W    +   A       
Sbjct: 137 IGIKRFKDTKNERFLSGEELAKLGDVLRQAEANFRAWEVARKAWEGDGRQGKAPVRPSNA 196

Query: 200 ------------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGFMKLLA 246
                         +G+R  ++       +      ++   + T            +LLA
Sbjct: 197 EAPAAIGVIRLLALTGMRRGEALALDWGEVDFEYGLLQLADSKTGRKSVPLGAAARQLLA 256

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305
             P  +    +               ++    +AG++    H +R   A + A  G +  
Sbjct: 257 AIPKPEGGGLVFRGPSGGPVGGLPHIWERIRKRAGLDGVRLHDLRHSYAAVGASGGQSLP 316

Query: 306 ELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR-ISSVVDSD 346
            L A  G       + Y    A  ++       + I++ +D  
Sbjct: 317 ILGAILGHSDTATTQRYAHLTASPVQAAADLISKNIAAALDGR 359


>gi|171778462|ref|ZP_02919620.1| hypothetical protein STRINF_00471 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282863|gb|EDT48287.1| hypothetical protein STRINF_00471 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 352

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 86/326 (26%), Gaps = 28/326 (8%)

Query: 17  RHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + GK  Y  +      G   +L     +       +             + R   TT   
Sbjct: 12  KRGK-SYRAQVSLYKQGTHKKLTKTFSTKKEAQLWALEMELAKGEGKELAHR--TTTFAD 68

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               +        +   +  ++      I +   D   + +    ++  ++     H+  
Sbjct: 69  FFENWIYLVKVNDVKETTFQNYVRTLGVIRKLFQDIQLKDLNDIVVQKKIDEYAKTHSRK 128

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188
           +  + L  ++   + A  + Y+A +    V++              T     +       
Sbjct: 129 TTHEVLLKVKTSLRDAYARGYIANDFARLVKKRGENPPKRNRALSITDFKKLRNYVLKHP 188

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----------QKTGTIITVEL 237
             +  L     L +G+R  +      + L      ++            +       V +
Sbjct: 189 EDEYNLLVLLALETGMRRGELLAIRPESLFEYGIRVRHSISPTSDDTSLKTQNAKRDVSI 248

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296
                +L+   P+ +  +       K +            TK  + K+  HG+R   A+ 
Sbjct: 249 NKEVYELIRKIPVKENGYIFGFSGFKQS-----ELLAELLTKLNIKKTTFHGLRDTHASF 303

Query: 297 SADAGATAHELMATYGWKTVDQAETY 322
                     +        +   + Y
Sbjct: 304 LFSQDIDIAYVSKRLAHINIQTTQNY 329


>gi|92115921|ref|YP_575650.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91798815|gb|ABE61190.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 399

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 92/358 (25%), Gaps = 34/358 (9%)

Query: 18  HGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALT-------------GSTPKREYINS 63
            G  ++ FR    G+   L +        A   A                   K + + +
Sbjct: 32  GGGKLWRFRYHFGGKEKMLSFGAYPEVTLAQARAKRDEARQTLAGGIDPAQKRKEDKVAA 91

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T   + +EY         A ++    +     +           I    I    
Sbjct: 92  SISAANTFGVVAAEYIDRLEKEGAAPSTVSKNKWLLQDLASPLTKRPIADILPAEILDLC 151

Query: 124 ESRKHTPS--SAIQFLTSMRVLFKW------AVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +  + +    +A +   ++  +F++      A      A+   L       +   +    
Sbjct: 152 KRVEKSGRRDTARRLRGTIGSVFRYAVVTLRAQSDPTYALRGALLKPEVNHRAAIVDEAK 211

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIIT 234
              +      +      R A   L  +  R  D        +       +   +   +  
Sbjct: 212 LGALMVNIDQYDGWPTLRAALLLLALTMTRPGDVRHMRKSEIIFPKALWRIPAERMKMRR 271

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWFKAKATKAGVNK---SAH 287
                   + LA+     +    N        +           +   + G +K   +AH
Sbjct: 272 PHDVPLSKQALAIIREVWDLTAGNGLLLPSIRSAIKPLSENAMNSALRRMGYSKEEATAH 331

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA---DRIRLGIKNSRRISS 341
           G R  ++TI  + G     + A    +  D     Y +     +R +L    +  +  
Sbjct: 332 GFRSSASTILNERGFNPDVIEAALAHQDEDDVRRAYNRATYLPERAKLMQDWADLLDE 389


>gi|163794184|ref|ZP_02188156.1| phage integrase [alpha proteobacterium BAL199]
 gi|159180352|gb|EDP64873.1| phage integrase [alpha proteobacterium BAL199]
          Length = 410

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/387 (12%), Positives = 112/387 (28%), Gaps = 52/387 (13%)

Query: 9   PFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSAL-----TGSTPKREY 60
           P         G+ +Y          RR+++      T   A   A             + 
Sbjct: 21  PGFGLRVYPSGRKVYVCQVRVGRRQRRLKIGLAETLTLDQARERAKLAIDAASEGRDPQL 80

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDY 111
               R+   T+  L + Y ++A             A ++           ++   G+   
Sbjct: 81  ERQERRAALTVAELCTVYMETAEAGQVRTRFGRPKAASTLAIDRGRIDRHLVPLIGNVPA 140

Query: 112 RKITTKHIRSGVESRKHT-------------------PSSAIQFLTSMRVLFKWAVRQEY 152
             +T   ++   +                          +A + +  +  ++ WA +++ 
Sbjct: 141 HALTRAAVQRLADDIASGKTAGRVKTKSRGVAHVTGGAGTAARVIDLLGGIYSWAAKRDL 200

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           V            +     R  T ++MQ      ++   +      A   +  +GLR  +
Sbjct: 201 VPTVNPAHGVDTAKAGTKDRVLTVDEMQALGKAIEAAQEKQPMAAGALRLIALTGLRREE 260

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           +C      +  +  S++   T T  ++         L       +  F+    +  +   
Sbjct: 261 ACGLRWAEVDLDAASLRLSSTKTGRSLRPLGSPAVDLLRHLPQLDAAFVFPSSRSRDPRT 320

Query: 269 --------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                         A    AG+ +  +H  R+  A+++AD G     +    G       
Sbjct: 321 GQSARAADLKKQLAAIFDAAGLADARSHDCRRTFASVAADEGFGDGTIGELLGHARRGVT 380

Query: 320 E-TYTKGADRIRLGIKNSRRISSVVDS 345
              Y +  D   +    + R+S  +D+
Sbjct: 381 AVHYVRRLDSALIA--AADRVSRRIDA 405


>gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 406

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 22/276 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK------- 127
           +Y K      +   SR          ++         R++  K+I   VE  K       
Sbjct: 120 DYIKYLADKDIEKTSRKVSMYTLIYHLQHYDKMGIRLRQVDKKYILGFVEYLKTATQKHC 179

Query: 128 -----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDM 179
                 + ++ + +          AV  E +  NP   ++    PKR+       T +++
Sbjct: 180 KSVKNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDEL 239

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237
           +         +  + AF F  + GLR SD       +L+                  +  
Sbjct: 240 KILSQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILS 299

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                + L   P+  +        +  ++  + +      A KAG+  + + H  R   A
Sbjct: 300 LPLSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 359

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 360 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 395


>gi|323669665|emb|CBJ94787.1| shufflon-specific DNA recombinase [Salmonella bongori]
          Length = 383

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 98/301 (32%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR 120
              R K  +L   + +Y  +        + +  +      +      +    +ITT  I 
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHK-RGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T ++ ++   ++ E        F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPM 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L      LL    +       +      +++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARHLLQGMTVALSGNVFHY-----SSSGFKSAWRVALQRLNIADLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++    YT   A ++   +   +R +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTHLRAYQLVSKLDARQRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium]
          Length = 163

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +Q ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRQHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3]
 gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3]
          Length = 412

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 88/287 (30%), Gaps = 29/287 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ R      G  D    ++T + IR+     K     
Sbjct: 121 METLTGIDYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGL 180

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 181 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 239

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G +             
Sbjct: 240 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 300 IPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 359

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
             T           ++    G  +    + Y +  +  ++  + N +
Sbjct: 360 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVK 406


>gi|299529229|ref|ZP_07042673.1| phage-related integrase [Comamonas testosteroni S44]
 gi|298722753|gb|EFI63666.1| phage-related integrase [Comamonas testosteroni S44]
          Length = 340

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 96/346 (27%), Gaps = 38/346 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P     + + G   YYF  G   R  +P   +      Y  A+            P  + 
Sbjct: 2   PNFRARKQKSGTTYYYFDTGAKPRKEIPLGSD------YRVAVQKWLELSAMPARPVSEN 55

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES 125
                L  +Y         A +++ +      ++     +        I  KHI   ++ 
Sbjct: 56  --FAELADKYEAEVIPLK-AKSTQATQLGDLKKLRTFFCNPTPAPLNAIKPKHIYLLLQW 112

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K TP++A +       +F   + + +            +  + G R     D      +
Sbjct: 113 AKDTPTTANRLKRVFSHMFN--MARAWGWTENENPCTGIEGHSLGKREVYISDEVYRLVY 170

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  + A +    +G R  D+       + +    IK  KT   +   +      LL
Sbjct: 171 EHGNVALKDAMDLAYLTGQRPGDTLSLTDHDIIDGYLVIKQSKTSAALRFIIEGELNALL 230

Query: 246 AMTPIGKETFFIN-------NDKQKMNATQFSIWFKAKATKA--GVNKS----------- 285
                 K +              + M+       F+   + A    +KS           
Sbjct: 231 DRIEERKRSHKTWSANLLVSQYGKAMSKQMLRKAFETARSDAADEADKSGNAALAAQIRA 290

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
              + +R  +A   AD            G  +V   +  Y +   R
Sbjct: 291 FWFYDLRAKAADDVADERGELAA-SKQLGHTSVQTTKRHYLRRGTR 335


>gi|311110137|ref|ZP_07711534.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
 gi|311065291|gb|EFQ45631.1| site-specific recombinase, phage integrase family [Lactobacillus
           gasseri MV-22]
          Length = 390

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 112/368 (30%), Gaps = 53/368 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPY---PHESTFIPAYMSALTGSTP-KREYINSPRKKPTTLK 72
           ++GK  Y  R      + +             A   A        +E +N    KP T+ 
Sbjct: 13  KNGKFKYSIRYTDPSFVGVRKKSVTIAKDTTRARNLANAKVKQMIQEKLNIQSIKPITMD 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128
            LI + + +     LA+ +R S+ S  D I +   D     + T  +   +      RK 
Sbjct: 73  KLIDKLKNNLDKQGLAIKTRNSYFSTLDIISKDFKDKLVASVNTTELNVYLNDLLYERKL 132

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------ 182
           +  +   +L  ++ +F++A++  Y+  +P L ++   +     +    E+          
Sbjct: 133 SNGTIKIYLLQLKKIFEYAIQFGYIKKDPTLKIKINYKNERAKKQSRVENWYLTDDELNT 192

Query: 183 ---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
                   +       F++L  +G+R  ++    + ++  +  +     T +        
Sbjct: 193 VLTYCLHKKREDYYHLFKWLYLTGMRVGEATALLINNVFQDPETKLWYATISGTLVHVKG 252

Query: 232 -------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                     I  E      K   +         ++N     + 
Sbjct: 253 KGEVRQEFTKTASSHRTIALPDEAVEIYKECSKDRNKNDYLFRNKFYGSQLSNLNNPFSV 312

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
           +  S + +    K    K  ++H  R    +  A+ G     +    G  + +     Y 
Sbjct: 313 STISHFLRVFVNKKKWKKQITSHIFRHTHVSKLAEEGYPLSLITDRVGHSSSEITRKIYL 372

Query: 324 KGADRIRL 331
               +  L
Sbjct: 373 HITKKEHL 380


>gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
 gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether]
          Length = 313

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 72/238 (30%), Gaps = 13/238 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            S+  +I        +     +    I   +  R ++ ++  + + ++  L + A +   
Sbjct: 68  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 127

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +   P    ++ +          +E               RL   FL+ +G R  ++   
Sbjct: 128 IFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRL-SVFLVDTGCRLGEAIGL 186

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +Q    +    K+    TV L     K   +     +  F   ++ +     F   
Sbjct: 187 TWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVR-----FRQI 241

Query: 273 FKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     +AG+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 242 WNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A]
 gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma
           laidlawii PG-8A]
          Length = 310

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 78/282 (27%), Gaps = 32/282 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVESRKHT 129
            + L  +Y   A    +++ ++ S+E    Q +          + T   I +  +     
Sbjct: 7   FRQLTKKYLDDA---DVSLTTKQSYERILQQFVEY--ANTLSDLPTRSDIMAYRDHLFKR 61

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
               ++    L  +R  ++W     + A            K       ++ + +Q     
Sbjct: 62  KLEETTIKYHLVVVRNFYRWYHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKLA 121

Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              S       +  +    +L +G+R  +  RA V  L            G   T +   
Sbjct: 122 QINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSF 181

Query: 240 GFMKLLAMTPIGKETFFINNDKQK-------------MNATQFSIWFKAKATKAGVN--- 283
             +  L    I       ++  +              M         K      G +   
Sbjct: 182 VRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDDK 241

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +AH +R  +AT++   GA   +             E Y   
Sbjct: 242 HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHA 283


>gi|83716149|ref|YP_438822.1| Bbp50 [Burkholderia thailandensis E264]
 gi|83649974|gb|ABC34038.1| Bbp50 [Burkholderia thailandensis E264]
          Length = 356

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 97/320 (30%), Gaps = 39/320 (12%)

Query: 64  PRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDY 111
           P    TT   L   +  +        +  +++  + +                  G    
Sbjct: 33  PEDGTTTSLLLGDWLDRWLA---AQRIEKSTKDGYTTAIKFWKETPRDLGQTRPLGGVSI 89

Query: 112 RKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           + + T  I++ V +R   T  +   +L+ +R     AV+ + +  +P  +V   K + + 
Sbjct: 90  KSLKTIDIQTAVANRPDLTGKTINNYLSVLRSALSLAVKDKLIVESPADAVPPAKHQKQP 149

Query: 171 IRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQN--------- 219
             P++ E+     +              EF  ++GLR S+       H+           
Sbjct: 150 PDPFSAEESNSIIACAERSYPGQVHNVTEFWFWTGLRTSEIYGLEWPHVDFASGTLLIAK 209

Query: 220 ---NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------- 269
                  +   KT     V L    +  L       +               +       
Sbjct: 210 AFVRGEQMDRTKTKVARLVILNSRALAALQRQRAFTQMANGRVFHDPRYNEGWADEDAFR 269

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +++    + G+  +  + +R   AT    AG T        G        TY+K  D 
Sbjct: 270 RTYWEPMLKRLGIRYRRPYNMRHSYATAMLMAGMTPAFCAKQLGHSVEMFLTTYSKWIDG 329

Query: 329 IRLGIKNSRRISSVVDSDDP 348
            +  ++   R+   + S +P
Sbjct: 330 DQNDLE-MARLERAISSPEP 348


>gi|312901390|ref|ZP_07760670.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
 gi|311291553|gb|EFQ70109.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0470]
          Length = 393

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 109/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHL---------- 217
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 218 -----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINN 259
                             N+I  I        I  +      + L      K    F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 402

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 17/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  +   + +    +           D    ++T + I       ++    A   + 
Sbjct: 125 KDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNELTEEFIHDYCLYLRNEVGLAQSSVW 184

Query: 139 S----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
                ++ +   A     +  NP                 T+ +++   +   E +    
Sbjct: 185 IYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHK-ERGFLTENEIKAMSTIELENANFAI 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPI 250
            R  F F  ++G+   D       ++     S           V      M +   +   
Sbjct: 244 ARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQIIER 303

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K      N     +    +   K  A   G+ K  S H  R   A ++ + G     + 
Sbjct: 304 NKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIESVS 363

Query: 309 ATYGWKTVDQAETYTKGADRI 329
              G   +   + Y K  +  
Sbjct: 364 KILGHTNITTTQIYAKVTNTK 384


>gi|16763023|ref|NP_458640.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144508|ref|NP_807850.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213161172|ref|ZP_03346882.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425488|ref|ZP_03358238.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|8896036|gb|AAF81219.1|AF247502_14 Rci [Salmonella enterica subsp. enterica serovar Dublin]
 gi|6995991|gb|AAC38070.2| Rci [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|16505330|emb|CAD09330.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140146|gb|AAO71710.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|32454468|gb|AAP83040.1| Rci site-specific recombinase [Salmonella enterica subsp. enterica
           serovar Paratyphi C]
          Length = 383

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR 120
              R K  +L   + +Y  +        + +  +      +      +    +ITT  I 
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHK-RGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T ++ ++   ++ E        F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPM 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L      LL    +       +      +++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARHLLQGMTVALSGNVFHY-----SSSGFKSAWRVALQRLNIVDLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   RR +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 331

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/314 (9%), Positives = 87/314 (27%), Gaps = 29/314 (9%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A          K +  +S +K    ++  +    +          +   ++ Y +  I  
Sbjct: 15  AQQKLDLSEFEKFKETSSKKKTQIEIRMALKRIFRQMELNGNRARTINDYQKYMNNFIEV 74

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERP 164
                   IT   I   +E+     +S  +    ++  +        ++       ++  
Sbjct: 75  CNIVYISDITIDSIYEWLETMGSVQNSTKRIRYKALSAVLNRFFENGWIETKFWRVIKIK 134

Query: 165 KRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
             +        ++  +  +          +   A   +  +G+R +   +   +H+    
Sbjct: 135 VDEKVKEAATQEDIDRLLRILDLSNYYEFRDACAVLLMFQTGIRINTLSQLENKHINFER 194

Query: 222 FSIK-TQKTGTIITVELPDGFMKLLAMTPI------------------GKETFFINNDKQ 262
             +           + +     ++L M                        T+   + ++
Sbjct: 195 KCLILDGSIMKNHKLSILPISDEVLQMIVTLIKQNNLIRESKNVENSLIFITYEGTSIQK 254

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              +          +    +   + HG+R+  AT     GA+   +    G   ++    
Sbjct: 255 SDKSNAIRRRLGQYSKDFAIPNINPHGLRRGFATNLLKKGASVPLISKALGHADLETTSR 314

Query: 322 Y-----TKGADRIR 330
           Y     T+ A+ +R
Sbjct: 315 YLYLDSTEAANELR 328


>gi|307545255|ref|YP_003897734.1| phage integrase family protein [Halomonas elongata DSM 2581]
 gi|307217279|emb|CBV42549.1| phage integrase family protein [Halomonas elongata DSM 2581]
          Length = 342

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 98/352 (27%), Gaps = 32/352 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            + +   R G   Y           R  +          A   A       +  +     
Sbjct: 6   GIPRVYWRKGAWRYMCNARQKSLVGRSWIRLGTTKAEALAEFEAWEPRLFPQAGMGR--- 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
                  L   Y         +  ++ +      ++     + +   +T   I S ++ R
Sbjct: 63  -------LFDRYEAEIIPAKPSPETQRANRQELKRLRAVFSNCEPEDLTVHDIYSFMDKR 115

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A   L  ++ +F++  R   +  NP        +     R     D +  +  
Sbjct: 116 GAQSKTQANHELALLKHVFRYGQRWGVIEHNPAD---PVTKFKLRPRDRYVTDNEFRRFL 172

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                  R        +GLR  D     +  LQ++   ++T K      +   D   +L+
Sbjct: 173 RQTSPWVRRYALLKYKTGLRQKDMLGLRLDQLQSDGILLRTSKASKQAVIPWDDELRQLI 232

Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNK-SAHGVRKFS 293
                          T F   + +  N  QF   +    +    + GV + + H +R   
Sbjct: 233 REIQADNLARGKQGPTLFCKRNGEPYNKDQFHSRWQYGMRLAIQEGGVERFTEHDLRAKH 292

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           AT +   G     + A          E Y +  + +R+            D 
Sbjct: 293 ATDAQSQGLD---VQANLQHSDKRTTEVYLRAKEVLRVSALGLDEFVDAPDE 341


>gi|293383666|ref|ZP_06629575.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|312906214|ref|ZP_07765226.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312909560|ref|ZP_07768415.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|291079002|gb|EFE16366.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis R712]
 gi|310627860|gb|EFQ11143.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|311290233|gb|EFQ68789.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
          Length = 434

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 104/370 (28%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    +K  +L+
Sbjct: 64  NGKFKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKEQKKVSLE 122

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 123 NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 181

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 182 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLN 241

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 242 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 301

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+    + +    F+   K 
Sbjct: 302 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKK 361

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 362 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 421

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 422 KTNLVEALNK 431


>gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 285

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +    +AG+ K  + H +R   AT   +AG     +    G K V   
Sbjct: 198 HHLSEEVLQRAVQVARRQAGITKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTT 257

Query: 320 ETYTKGADRIRLGI 333
           + YT    R    +
Sbjct: 258 QIYTHVLGRGASAV 271


>gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
 gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026]
          Length = 308

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 81/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+ D+I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLDEIDEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          ++         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEKKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 387

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 94  EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 153

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 154 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 212

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 213 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 272

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 273 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 332

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 333 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 364


>gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40]
          Length = 362

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 23/273 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
           + L +++  +      A  +  ++     +I     D     +T  H     +S    H+
Sbjct: 10  EALYNKHINALIRQGKAATTIDAYSRAVRRI-TYFFDESPDTLTQDHFEKYFQSLIQTHS 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+       ++  +K+ +++E+  +N       P          T +++ +      + 
Sbjct: 69  WSTVKTDRNGLQFFYKYVLQKEWKWVNIVK----PPVVKVLPDVLTIDEIHRLLDSA-KD 123

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            + +         GLR S++    V  +        I+  K      V LP   ++ L  
Sbjct: 124 LRYQTFILVCFSMGLRLSETLNLKVGDIDSERMKVHIREGKGKKDRYVTLPLSALQALRK 183

Query: 248 TPIGKETFFINND-----------KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
                                      M   +    F++    +G+ K  S H +R    
Sbjct: 184 YWKTHRNPNYLFPSGNTAAQRQDATIHMGRGRLQQKFRSIVRHSGIRKKISIHSLRHSYG 243

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T+  +A  +  ++    G  + +    YT+ +D
Sbjct: 244 TLLTEANISLRKIQQEMGHVSPNTTARYTQLSD 276


>gi|41189522|ref|NP_958623.1| 77ORF007 [Staphylococcus phage 77]
 gi|40557223|gb|AAR87879.1| 77ORF007 [Staphylococcus phage 77]
          Length = 401

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/398 (10%), Positives = 114/398 (28%), Gaps = 69/398 (17%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K + ++   K  YY +         +R+   L    + +   A          K    +S
Sbjct: 5   KFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSS 64

Query: 64  PRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              K  T   L+ E+ +         V +  + ++    I + S  +    KI TK++++
Sbjct: 65  SELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQT 124

Query: 122 GVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP-------- 164
            +      ++ +   + L  M+         + +       ++      +          
Sbjct: 125 FINKLSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEA 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCR--------- 211
           K           +      +  +   + R+    A E    +G+R  +            
Sbjct: 185 KMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLK 244

Query: 212 ----------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258
                       ++          T+  G+   + +      +L    +  +        
Sbjct: 245 NKTIAINGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQWEPS 304

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                          M  ++ +    + A    +NK  + H +R    ++ A+   +   
Sbjct: 305 YVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKA 364

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +M   G        + YT   +  ++  +  +++  +V
Sbjct: 365 IMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
 gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1]
          Length = 385

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 96/365 (26%), Gaps = 49/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K    +G                 +        A+  A      ++    +    P
Sbjct: 18  GYLGKYTDINGNT------KTKTYHHGGFSSSKAAKLAFDRAKVEFDHRKNNPAAIMDNP 71

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127
            T   +   + K+     +  ++    E  F   I    G      IT +  +      +
Sbjct: 72  -TFDEVYEVWLKTYKL-GVKESTLNRVEGIFKHHITPSFGGMRINTITWQKCQEEALKWR 129

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR------KTEGIRPWTKEDMQQ 181
            +     +      ++F+ A +   +  NP   V+ PK              WT E +  
Sbjct: 130 ESVKQFNKLAQYAALVFRTAQKMGVITTNPMKLVDVPKIAVDYSKDKAADNFWTAEQLAT 189

Query: 182 FKSFWSEGSQPRLAFEFL--------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           F +        R    +           +G+R  ++       +      +   KT +  
Sbjct: 190 FLAVVDATDGHRTQPRYDRSALFYLLATTGMRKGEALALTWSDIDLKNGLVTINKTISRS 249

Query: 234 TVELPD------------------------GFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                          + K L + P  K+  F N   Q M+    
Sbjct: 250 IDNHQIISTPKTRNAYRTLSLNSSTIDRLKKYRKSLVVIPRAKDLIFTNQKGQIMSVMTP 309

Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
           + W +A   +  +   + HG+R   A+I          L    G   +      Y   + 
Sbjct: 310 NHWLEALIGETDLPTITVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQ 369

Query: 328 RIRLG 332
           +    
Sbjct: 370 QELSA 374


>gi|145708124|ref|YP_001165299.1| site-specific recombinase [Ralstonia phage phiRSA1]
 gi|139003913|dbj|BAF52427.1| site-specific recombinase [Ralstonia phage phiRSA1]
          Length = 360

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/337 (10%), Positives = 86/337 (25%), Gaps = 28/337 (8%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K +  +    Y       R         S    A                   +   T
Sbjct: 3   LYKRKDSN-NWYYKLYAPGNRTPVQGSTGTSDRERAQEYHDRLKVDLWNQAKLGHQPRYT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127
               +  Y +          +     ++   + +         I    + +    ++   
Sbjct: 62  WNDAVVRYVEDRAELRSLETT----RTHLRWLDKHLDGVVLADIDRDRVDALARLKRAEH 117

Query: 128 ---------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                           +PS+  + +  +  +   AV   ++   P     +   K     
Sbjct: 118 RIVRTREGIKQLPGTVSPSTVRRVIGVLTAVLNAAVEWGWLTSAPKRKRVKTAGKRIRWL 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              + +    +         R + E  L     +GL+ S           +   +   + 
Sbjct: 178 SPAEAERLLAELPDHLAEMARFSLETGLRRANVTGLQWSQVDLVRRVAWIHADQAKAHKA 237

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
               ++    +   + LA     +   ++   +        +  +K    +AG+ +   H
Sbjct: 238 ITVPLSDTAVEVLRRQLAKPRKPQYVSWVFVYRGCSIYKTTTAAWKKAQKRAGIRDFRWH 297

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +R   A+     G     L    GW+T++  + Y  
Sbjct: 298 DLRHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13]
 gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13]
          Length = 407

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 70/261 (26%), Gaps = 17/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              A N+   +      +           D    ++T + IR      K+    A   + 
Sbjct: 125 KDRAKNTYNKYLVVRKYVAEFIKYQYKRSDMSMNELTEEFIRDYCLYLKNVVGLAQSSIW 184

Query: 139 S----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
                ++ +   A     +  NP   +       +     T +++        E      
Sbjct: 185 IYSIPLKHIVTAAHYNGKIPRNPFA-MYHVDPDHKEREFLTLDELTAMTDIKLEDPNMAF 243

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPI 250
            R  F F  ++G+   D       ++     +           V      M + + +   
Sbjct: 244 ARDLFIFGCWTGISFIDIKNLTEDNISMVNSAPWIVSKRQKTGVPFQIKLMDIPMQIVER 303

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            K     N+     N    +   K  A   G+ K  S H  R   A ++ + G     + 
Sbjct: 304 YKSFRKGNHLFNIGNLDGINKRIKKVAVMCGIKKRVSFHVSRHSWAVLALEYGMPIESVS 363

Query: 309 ATYGWKTVDQAETYTKGADRI 329
              G   +   + Y K     
Sbjct: 364 KILGHTNITTTQIYAKVTSTK 384


>gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B]
 gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B]
          Length = 380

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 106/373 (28%), Gaps = 56/373 (15%)

Query: 11  VTKERTRHGKIIYYFRKGH-----GRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +  E+ + GK+ +  R         +R   L               L         +   
Sbjct: 1   MWSEKHKSGKVNFVERYKDPYTNKWKRTSVLMEKDTPRIRKEAQRILDAKIADI--VRKL 58

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGV 123
           +        LI E+        +  +S ++ +    +I  + G +     I  +++++ +
Sbjct: 59  QTSDMLFTNLIDEWWIFYQ-QEIKRSSIVTLKGNIREIRAEFGINIPVVNIDPRYVQNYL 117

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182
           ++   + +   +  + + ++F +AV  + +  NP    + PK K         E+     
Sbjct: 118 DNLDCSRNKKERNKSMLNLIFDYAVSLDIIKDNPARRAKLPKIKKTLNDWKKIEEKYLEE 177

Query: 183 ---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
                            +  L  EF+  +G R  ++      ++     +++   T    
Sbjct: 178 EEIKRLLKELFRRPSTHRLGLLSEFMSLNGCRIGEAISIEPDNIDFKNKTLQLHGTYDRT 237

Query: 233 -----------------ITVELPDGFMKLLAMT-------------PIGKETFFINNDKQ 262
                                +    M++L                       F   +  
Sbjct: 238 NGYINGEKTSPKTLASYRETIMSKREMEILQEMEFINELEKNTNKRYRDMGYIFTTRNGV 297

Query: 263 KMNATQFSIWFKAKATKA----GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +    F++  K    +       N ++H  R    +  A+       +M   G      
Sbjct: 298 PIQINSFNLALKKANERLEQPINKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKT 357

Query: 319 A-ETYTKGADRIR 330
             + YT    +++
Sbjct: 358 TVQIYTHITKKMK 370


>gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
 gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA]
 gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella
           sp. HGA1]
          Length = 266

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 72/271 (26%), Gaps = 17/271 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  +        ++ N+  S+     Q +       Y  +  + + S  +    +    +
Sbjct: 1   MEAFINYLKSKEMSQNTISSYSYAVSQFLS-----RYTTVNDESLLSHKDWLVSEFATKT 55

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A   + ++                  +  +           +        +         
Sbjct: 56  ANNRIGALNCYLDHIGYDGMRLRGVRVQQKPFLDNVISQDEYETLRDGLLEDG---DLYW 112

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG- 251
                FL  +G R S+  R  V+ ++     + ++                 L       
Sbjct: 113 HFVVRFLACTGARISELRRLTVESVRVGHLDLISKGEKLRRIYIPKSLQQDALLWFKQCS 172

Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306
             +   F+  +   M+    S+  K  A + GVN      H  R   A            
Sbjct: 173 LGEGFVFVGPNGNPMSTRGLSLGLKRCAKRYGVNPDVVYPHSFRHRFAKNFIAKNPDIAF 232

Query: 307 LMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           L    G ++++    Y +  A+  R  +  +
Sbjct: 233 LADLMGHESIETTRIYLRRTAEEQRAAVDKA 263


>gi|294340320|emb|CAZ88701.1| putative Site-specific recombinase, phage integrase family
           [Thiomonas sp. 3As]
          Length = 347

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/347 (10%), Positives = 89/347 (25%), Gaps = 32/347 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPTT 70
             E+ ++G      RK     I            A+   +     +    +     +  T
Sbjct: 3   YIEKRKNG-YRAQVRKRGLPSIS-RTFDLLADAEAWAREIEREAQRGNVAVLRQDAQRVT 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
           +   +  Y         +        +   +   + G      +    + +  +      
Sbjct: 61  VAEAMDRYLAGPVQAMKSA---KDVRTRLGKARERFGAHYLSNVRGVDVSAWRDDLLQEG 117

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             P + I  + +   LF +  +   + +    P   V +P       R     ++    +
Sbjct: 118 LAPQTVIHHINAFSALFSFVEKDLSIDLPAGNPASKVRKPAAPPARDRRLRAGEVDALLA 177

Query: 185 FWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
             ++     L    +L   + +R  +        +        +   K G+  TV L   
Sbjct: 178 AAAQARAVGLRQIIILAVETSMRLGELLGLEWSRIDLARRTAHLVDTKNGSARTVALSSA 237

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------------S 285
               L   P   +        +      +             +                 
Sbjct: 238 AAAALQSLPRRLDGRVFGWQAKDSFEKTWQRCIARAKAAHDEDCARNCKKPDPAFMDGLH 297

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H +R  + +   + G    E+ +  G K++   + YT   +  +L 
Sbjct: 298 FHDLRHEATSRLFEKGLGIMEVASMTGHKSLSMLKRYTH-IEAEKLA 343


>gi|259503519|ref|ZP_05746421.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168597|gb|EEW53092.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 376

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 109/365 (29%), Gaps = 50/365 (13%)

Query: 14  ERTRHGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTG---STPKREYINSP 64
              + G       +      G  +RI +  P +                     E     
Sbjct: 2   YIQKSGNKFRLVERYKDPLTGKLKRITIGIPDKRKSTVKEARIRLNRLIEQKLSEVQQGN 61

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123
                TL  ++ EY K +    +  ++  +  +    +    GD     KIT K I   +
Sbjct: 62  IIHGITLGQVLDEYEKESSSR-IRRSTYYNHLTMAKNMRATIGDDALIEKITPKVITKFI 120

Query: 124 ESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           ES  +     +   A ++      + ++A++Q YV  NP   VE   +          + 
Sbjct: 121 ESLMYGDKNISSGYASKYKYFCHTIMEYALKQNYVKNNPVDKVEIDYKTPVSGVKIQNKF 180

Query: 179 MQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           ++Q +        ++  +      E+L  +G R  ++       +  N        TGT+
Sbjct: 181 LEQSELETLLKYAYAHNTTYAQLCEWLYLTGSRIGEATSLNFDDVHQNGNHWVVDITGTL 240

Query: 233 ITVELPDGFMK-------------------LLAMTPIG------KETFFINNDKQKMNAT 267
               +     K                    L +              F  ++   + ++
Sbjct: 241 DYDHVKITDQKKAANPKTASSVRSVILPEKALKIYQDRIAETGGNGFIFCTSNGTPVQSS 300

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             + + +A   K  ++K  S+H  R    +  A+ G   + +    G        + Y  
Sbjct: 301 ALNSFLRAAKKKLKIDKPLSSHIFRHTHISKLAELGVPIYIIQQRVGHADSKVTRQIYLH 360

Query: 325 GADRI 329
             ++ 
Sbjct: 361 VTEKA 365


>gi|221141217|ref|ZP_03565710.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|269940391|emb|CBI48768.1| integrase [Staphylococcus aureus subsp. aureus TW20]
 gi|302750718|gb|ADL64895.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|329313555|gb|AEB87968.1| Pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 406

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 109/400 (27%), Gaps = 71/400 (17%)

Query: 13  KERTRHGKIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K + +  K  YY +         RR+   L    + +   A          K        
Sbjct: 7   KNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTT 66

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            K  T      E+ ++          +  +  S  + + +    D    KIT  + +   
Sbjct: 67  LKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVF 126

Query: 124 ESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ERPK 165
           +            +  L+  + +F++  R   +     L                 +R K
Sbjct: 127 DEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNK 186

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQN 219
                      +D+         G   R      L  EF   +G+R  +      + +  
Sbjct: 187 YLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDF 246

Query: 220 NIFSIKTQKTGTI--------------------ITVELPDGFMKLL-------------A 246
           +  S+    T                        T+ L     ++L              
Sbjct: 247 DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G + 
Sbjct: 307 DGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSL 366

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             +M   G          Y+   ++  +      ++  V 
Sbjct: 367 KAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287]
 gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 85/288 (29%), Gaps = 20/288 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            ++      G  + ++   +E+ +  +           D  ++++T   I       +  
Sbjct: 122 EDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYHRSDISFKELTEDFINDFDFYLRVN 181

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   ++  +  + + A+ +  +  NP  +      + +      +E     +  
Sbjct: 182 KSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGYLLREEVETLLQYH 241

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S    R  F F  ++G    D  +    HLQ+     K        +    +  + 
Sbjct: 242 PKSASAELVRDLFVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLL 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +A   I K       +      +  +     K       +      S H  R    T+ 
Sbjct: 302 DIAEKIIEKYEGTTRTEALFPTPSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G     +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 362 LTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 409

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  S+ S    +           D  + ++T   I    +
Sbjct: 114 LDMLIRE-KESHIGVDIRKESMASYHSTRIHLQEFIQKKYKVSDLAFSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+          V+  K   +  +   +   +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADFLLFDKVKISKGNKKLPKALDRGAFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +  S    K       
Sbjct: 233 KLKTLHFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDESSLWLKFN--RHK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319]
 gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319]
          Length = 435

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 30/275 (10%)

Query: 97  SYFDQIIRKSG--DFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + ++  G  D     IT    +  R  ++ R    ++   +L  +  L   AV Q 
Sbjct: 136 RNLHEFVKDKGVQDILIGAITKDLFEEYRFYLKKRGLKGTTINNYLCWLSRLMYRAVSQN 195

Query: 152 YVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  NP  + +  K        + +    +   +   SE  Q RL F F  ++GL  +D 
Sbjct: 196 IIRCNPFENAKYEKEDKNIRYLQKYDVARLMTMRMNDSEAEQARLMFIFSCFTGLAIADM 255

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN---------- 259
                +H+Q      K  +     T       +  +A T I       +N          
Sbjct: 256 ETLQYKHIQTAADGQKYIRKERQKTKVEFVVPLHPIAETIISHCRKANHNDLTTGQDEQT 315

Query: 260 ---------DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
                         + +  +          G+    S H  R    T+S  AG     + 
Sbjct: 316 MKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTFGTMSLSAGIPIESIA 375

Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              G  ++   + Y +  D      ++  R+ + +
Sbjct: 376 KMMGHASISSTQIYAQVTDCK--ISEDMDRLIAKL 408


>gi|213857670|ref|ZP_03384641.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 365

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR 120
              R K  +L   + +Y  +        + +  +      +      +    +ITT  I 
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHK-RGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T ++ ++   ++ E        F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPM 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L      LL    +       +      +++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARHLLQGMTVALSGNVFHY-----SSSGFKSAWRVALQRLNIVDLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   RR +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|186472282|ref|YP_001859624.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184194614|gb|ACC72578.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 437

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 117/382 (30%), Gaps = 56/382 (14%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTG----------------STPKREYINSPR 65
           +Y + +  G + R+     S  +     AL                  +  +R   ++  
Sbjct: 54  VYRWTRPDGGQQRIVIGDASMTVEEARKALAKFIARTDHKVDDTSVRVTKHERRVADAKN 113

Query: 66  KKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
               T+   +  +YR      + +     + ++          D    ++T   ++  +E
Sbjct: 114 VGMPTVGDYLDGDYRTFWLGSTRSETPEQNIKNIRRDF-PDLMDRRLDEVTRPAMKKWIE 172

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKED 178
            R       +   + L S+  LF +AV  E +A NPC  +     P+  +E  R  T E+
Sbjct: 173 KRLADGCKATGINRVLGSIGGLFSYAVEHEIIAANPCAKLRCKIDPEEDSEHGRELTAEE 232

Query: 179 MQQFKSFWSEG----------------------------SQPRLAFEFLLYSGLRCSDSC 210
            Q+ +    E                                + A    L +G+R S+  
Sbjct: 233 EQRLRVVLDERETRIREEAAARHDSRKVATIPGEFHSFVDHVKPAILLALNTGMRRSELL 292

Query: 211 RAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           RA    +     +I+ +           + +    + +L          FI  ++     
Sbjct: 293 RARWTAIDWKAQTIRIEAWTSKVKRTRVIPMNVEALSILKAWRRQTRFEFIFTNEIGECL 352

Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +   W K K      +      R  +AT   + GA+ + +    G K     + Y +  
Sbjct: 353 REVRDWNKIKREAQIRDFRFMDTRHHTATRMINEGASPYHVQKLLGHKDGRMTQRYMRAR 412

Query: 327 DRIRLGIKNSRRISSVVDSDDP 348
           D           +    D+D P
Sbjct: 413 DVKLAEAVALLDVPRQADADHP 434


>gi|309805011|ref|ZP_07699068.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|329919942|ref|ZP_08276844.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|308165670|gb|EFO67896.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 09V1-c]
 gi|328936829|gb|EGG33265.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 373

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 38/358 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSP--R 65
             V K  T+ G I Y F+   G  I         +   +Y  A       +        +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   +  L +++  +    ++  ++   ++E Y   I  K G+    KIT   ++    
Sbjct: 65  QKQIKVNDLFTQWFDTYQ-TTVKESTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFAN 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
           +           L  +       +   Y+ +NP   +  PK+ T   R  +         
Sbjct: 124 ALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREEL 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------- 223
               K   S      L F  L  +GLR  ++       +  N                  
Sbjct: 184 DTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKY 243

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                +   ++ TV L     + L      ++                 +          
Sbjct: 244 IVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIY 303

Query: 277 ATKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +
Sbjct: 304 KQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSK 361


>gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether]
          Length = 308

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 72/238 (30%), Gaps = 13/238 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            S+  +I        +     +    I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +   P    ++ +          +E               RL   FL+ +G R  ++   
Sbjct: 123 IFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRL-SVFLVDTGCRLGEAIGL 181

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +Q    +    K+    TV L     K   +     +  F   ++ +     F   
Sbjct: 182 TWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVR-----FRQI 236

Query: 273 FKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     +AG+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 237 WNEAKAEAGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
 gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC
           8801]
          Length = 314

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 25/271 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
           + E+  +     L+ NS+ ++       +    +  + +I ++HI            PSS
Sbjct: 26  VEEFLATKA---LSPNSQKAYRRELLTFLA-IVNKPFARIQSRHIVQYKVQLTEKLAPSS 81

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
             + L+++   F W                 + P      +     E + +        +
Sbjct: 82  VNRALSALSSFFDWLEEAYGNPNPTLTIRQNKLPLPPARDLSDAELEALFEALENRPNLT 141

Query: 191 QPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + R  A    L  GLR  +     +         I+  K  +   V L       +    
Sbjct: 142 KVRDKAVFAALRHGLRAGEVASLNLGDYDGIRLHIRVAKDDSSGHVPLDAPGRDAINTYL 201

Query: 250 IGKE---------------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
             +                   + N   +        + K     AGV N + H +R   
Sbjct: 202 QQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQGIYYFIKELGEMAGVANLTPHRLRHTF 261

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           AT     G            K+    + Y K
Sbjct: 262 ATQLLLTGMEPLHARTLTRHKSEVSFKRYAK 292


>gi|218531328|ref|YP_002422144.1| integrase family protein [Methylobacterium chloromethanicum CM4]
 gi|218523631|gb|ACK84216.1| integrase family protein [Methylobacterium chloromethanicum CM4]
          Length = 414

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 110/375 (29%), Gaps = 40/375 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGH---------GRRIRLPYPHESTFIP-AYMSALTGSTPKR 58
           P +       G   +  R            G   RL           A  +   G  P  
Sbjct: 28  PGLYLVVQPAGGKSWAVRYRAAGKPRKLTLGPYPRLGLADAREAARTALHAVAEGRDPAG 87

Query: 59  EYINSPRK----KPTTLKWLISEYRK-SAHWGSLAVN-SRISFESYFDQIIRKSGDFDYR 112
           E   +  +    +      + ++Y +  A   + +   +        D    K  + D R
Sbjct: 88  EKQAARVEVAAVQTMRFGAVAADYIERYAKPRNRSWRETESFLTRTLDA-TDKWQEKDVR 146

Query: 113 KITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            I  K +R  +++     +S  A +   ++R  F W V +  +  +P   ++ P  +   
Sbjct: 147 AIGRKDVRDALDAVVARGASIHANRLFAALRRFFAWTVERGILDASPMAGLKPPSPEISR 206

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNN--IFSIKTQ 227
            R  T  ++        E   P      LL  +G R S+   A  +    +   ++I  +
Sbjct: 207 DRVLTDAELVAVWKAAGEVGYPFGPVVQLLILTGQRRSEVVEAEWREFDLDGATWTIPRE 266

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----- 282
           +        +P     +  +  I                T FS   KA     G+     
Sbjct: 267 RAKNDRAHVVPLAPQAVKILRCIPCVGTRSRLLFTTTGETAFSGVSKATDRLQGLSAKHL 326

Query: 283 -------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKGA--DRIR 330
                      H +R+  A+  A  G   H +       +         Y + +  D  R
Sbjct: 327 PEGIEVEPWRLHDLRRTFASGCARLGVAVHVVEKALNHVSGTHSGIVGVYQRHSYGDERR 386

Query: 331 LGIK-NSRRISSVVD 344
             ++  +  +  +V 
Sbjct: 387 CAMELWAAHLDGLVG 401


>gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
 gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus
           oceani AFC27]
          Length = 251

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 73/210 (34%), Gaps = 9/210 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           + +P S  ++L ++   F  AV++  ++  +P   + + K     +R  +  + ++    
Sbjct: 25  QRSPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEPRGRVRFLSDSERERLLKA 84

Query: 186 WS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELP 238
                 S    A    L +G R  +      +++            K  +   +      
Sbjct: 85  CRGSSNSFLYPAVVLALSTGARRMEIMALRWRNVDLQRGLISLHETKNGERRALPLAGHA 144

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
              +K L+            ++            ++    +AG+ +   H +R  +A+  
Sbjct: 145 LDCVKRLSKVRQIDTDLLFPSNHNPQQPLDLRKPWEIALKQAGIEDFRWHDLRHSAASYL 204

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327
           A  GAT  E+    G KT+   + Y   ++
Sbjct: 205 AMNGATLAEIAEVLGHKTLQMVKRYAHFSE 234


>gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608]
 gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608]
          Length = 395

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 97/296 (32%), Gaps = 20/296 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSG--DFDYRKITTKHI---R 120
           PTTL  L  E          +   +   S+    +  +   G  D     +T +     R
Sbjct: 101 PTTLLALSREKLSIVQSTKASGTYQSCRSYHRQLESFVESKGVADIPLTTLTMEFFDDYR 160

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + + +  SS  Q L  +  L   AV Q+ +  NP    +  + +   IR  +K D+ 
Sbjct: 161 IHFKRKGYALSSTKQNLFWLSRLMYRAVSQQTIRYNPFEDAKYERVER-KIRCLSKTDIA 219

Query: 181 QFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----I 232
              +   +  Q    R  F F +++G   +D  +     ++ N   I+  +         
Sbjct: 220 CLLAMPLQNEQAEFVRRLFLFSVFTGQAFADVSKLRYCDIETNNTGIRYIRQYRKKTDVE 279

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
               L     ++L++ P+             M+  Q  +  K      G+    S H  R
Sbjct: 280 SITPLHPIAEQILSLYPLKDRKEDSPIFATSMSRIQIGMHLKTIGLACGIRQSLSFHVDR 339

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
                ++ +AG     +    G  ++   + Y +  D          R+     ++
Sbjct: 340 HSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKD--MDRLIEKCGNE 393


>gi|323487258|ref|ZP_08092561.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
 gi|323399484|gb|EGA91879.1| hypothetical protein HMPREF9474_04312 [Clostridium symbiosum
           WAL-14163]
          Length = 344

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 88/290 (30%), Gaps = 21/290 (7%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---- 120
           +    T   ++ +++          ++   +      ++  +G    R I  KH+     
Sbjct: 55  KSDDDTF-EILHDWQNQLIIDGKTKSTIKQYGYEIKNLLLYAG-TGIRDIREKHVIGYLT 112

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            G   +K    +    + S+R  FKWA   + +  +P   ++  K +       T E  +
Sbjct: 113 RGKVQKKWKDKTYNSKVRSLRAFFKWAYEYDVITTDPMKRIKETKEEYRMGSILTPEQRE 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239
            F+    +  +     + L  SG R S+  +     +  +N       K      +    
Sbjct: 173 IFRC-CCKNERELALVDLLYSSGGRVSEIIQLNRDSIDLSNRRVNIVGKGRKEREIRFSA 231

Query: 240 GFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAHGV 289
                +      ++              ++++        K          G+  S H  
Sbjct: 232 QAKVHIEGYLRSRKDDSQALFVSQKAPHKRLSDDGVRYILKTIQSRDVRLKGLQISPHTF 291

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338
           R+   T   + GA A  +    G   VD   + Y K +          RR
Sbjct: 292 RRTCGTDMINRGAPAELVQKKLGHTKVDTTLQCYAKISQEA--ARDAERR 339


>gi|320654688|gb|EFX22689.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 386

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 108/378 (28%), Gaps = 57/378 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + R G     F    G R+R      S    A               N         K  
Sbjct: 4   KLRGGTWHCDFVAQDGSRVR-RSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              + +          S    +S     +    +     ITT+ I   V+  ++      
Sbjct: 63  CIRWLREKSDKK----SIDDDKSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLN 118

Query: 135 -----------------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
                                        + L  +R +   AV   ++       +  P+
Sbjct: 119 WEMSRDRCLRLGKPVPEYKPKLASKGTKTRHLAILRAILNMAVECGWLDR--APKISTPR 176

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNI 221
            K   IR  TKE+ +  + F            F + +GLR S+        +        
Sbjct: 177 VKNGRIRWLTKEESK--RLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAW 234

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------------ 269
                 K G  I V L +   ++L       + +   + K    +               
Sbjct: 235 MHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDS 294

Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  +K    +AG+ N   H +R   A+    +G +   L    GW+T++  + Y   +  
Sbjct: 295 NKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLS-- 352

Query: 329 IRLGIKNSRRISSVVDSD 346
                +++ +I +++  +
Sbjct: 353 AGHLTEHASKIDAIISRN 370


>gi|255015565|ref|ZP_05287691.1| putative integrase [Bacteroides sp. 2_1_7]
          Length = 318

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 87/277 (31%), Gaps = 24/277 (8%)

Query: 79  RKSAHWGSLA----VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP-- 130
             S     L       +  ++ S    + +  G  DF + K++ + I    +    +   
Sbjct: 30  YISDKIRELRQSGHEGTARAYNSSLSSMKKFLGSRDFPFNKLSPQVITMYHKQLLASGVC 89

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++   +L +++ L++   ++  +           K +    R    + +++      E 
Sbjct: 90  ENTICFYLHNIKALYRKGCQEMGLEQPSPFREVHFKTEKTVKRCLETDVIKKVSRLELEE 149

Query: 190 ----SQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
               S  R  F F  Y+ G+   D        L  +    +  KTG ++ V +    +++
Sbjct: 150 GSTVSLARDIFMFSFYTRGMSFVDIALLKKADLFPDEICYRRHKTGQLMRVGMNRQIIRI 209

Query: 245 LAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
           L                         K    +     K  +   G+      H  R   A
Sbjct: 210 LTKYENTVGEYVFPLFTEEQEPYAGYKNAYHKIRYALKKISCSLGLSTPLRLHAARHSWA 269

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           TI+ + G   H +    G  + +    Y K  DR  L
Sbjct: 270 TIAKEHGIPVHIIGECLGHMSEETTRIYLKDLDRSVL 306


>gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 291

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +A   +AG+    + H +R   AT   +AG     +    G K V   
Sbjct: 204 HHVSEKVLQRAVQAARQQAGLAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATT 263

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 264 QIYTHVLGR 272


>gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302]
 gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302]
          Length = 409

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 23/265 (8%)

Query: 86  SLAVNSRISF---ESYFDQII-RKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQ 135
             A  + +++        + I +K    D    ++T + I        + +     +   
Sbjct: 128 DRAKGTYLTYFYTRRTLAEFIQKKFHSKDLAFGQLTEQFIHDYQSFVVDDKGLAIETCRH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGS 190
           +L  ++ + + A ++ Y           PK++ +  +  ++E  ++ +        S  +
Sbjct: 188 YLAIIKKVCRTAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHT 247

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248
             R  F F  Y+G   +D+      +L  +       K             +KLL     
Sbjct: 248 LARDLFLFACYTGTAYADAVSVTRDNLFTDENGGLWLKY--RRKKNELRACVKLLPEALA 305

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATA 304
                           ++        K  A  A +  + + H  R   A++   +AG   
Sbjct: 306 LIEKYRDDDRQTLFPMLHYPNMRRLMKCLAILADIKEDLTYHAGRHSFASLITLEAGVPI 365

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + Y K   + 
Sbjct: 366 ETICKMLGHSNLQTTQVYAKVTPKK 390


>gi|319936315|ref|ZP_08010731.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
 gi|319808430|gb|EFW04982.1| phage integrase family Site-specific recombinase [Coprobacillus sp.
           29_1]
          Length = 398

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 102/343 (29%), Gaps = 41/343 (11%)

Query: 14  ERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G   +     +    G++I+      S+   A            + +    KK  
Sbjct: 7   KKAKNGTYYFRANLDYHPVTGKQIQKYRSGFSSKKEAKEEYSKLILTSVDDLVEEEKKEI 66

Query: 70  TLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T K  + E    + KS     +  ++  +      +  +        KIT  H++S    
Sbjct: 67  TFKQYVDELFFPWYKS----QVKESTFKNRHQSMCKHFKYFDKTLVNKITPIHVQSWQLK 122

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
               + P+               A+       NP   +   K+    I  WT ++ Q   
Sbjct: 123 LSKVYGPNYIRNVQGMFSRAMDRAIVLGLAKENPSKIIGNIKKHKVKIEFWTLDEFQNII 182

Query: 184 SFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHL-----------------QNNIF 222
           +   +           L+     GLR  ++     + +                  N+  
Sbjct: 183 ALLKKDDYYEHYIFISLWLLFMAGLRIGEASALQWKDIDFETGVLSVTKNLYYKSCNDYK 242

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKA 277
            ++ +   ++  + L +  ++ L +    ++           +    N        +  +
Sbjct: 243 FVEPKTKASVRQIVLDEDTLEQLQLWKSAQQKIIKTDFLLSYNGTPTNKHSLPRAIEKLS 302

Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             A +++   H +R   A++    G     +    G + ++  
Sbjct: 303 EMANIHRIKVHALRHSHASLLISMGENPLIIKDRLGHEDIETT 345


>gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 276

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 10/200 (5%)

Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           P +    L   R +F    R  ++ A NP  +V   K     +   T E+  +      +
Sbjct: 44  PRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEIELAWLTVEEAARLLEECEK 103

Query: 189 GSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                L    +  L +G R  ++     + +     +    K      V + +   +LL 
Sbjct: 104 SKAEDLTMIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEELYELLP 163

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
            +   K  F           + F    K    +    + +H +R   A+     G     
Sbjct: 164 KSRTSKPLFTGC-------YSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMGGGNILV 216

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G   +     Y   A
Sbjct: 217 LQRILGHTDIKVTMRYAHFA 236


>gi|165976842|ref|YP_001652435.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876943|gb|ABY69991.1| integrase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 266

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 75/262 (28%), Gaps = 12/262 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           ++K     +LA N+  ++     Q  +   D     +    +        + P +    L
Sbjct: 5   FQKYLSNQNLAKNTVSAYLFAVKQFYKLFPDITKSHLKEYKVFLIE---HYKPQTVNLRL 61

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++    ++  ++++      +  +           +      + +              
Sbjct: 62  RAINCYLEFLKKEKWKLTFVKVQQKPFLENVISEADY---HYFKQRLKEDNELYWYFVIR 118

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKET 254
           F+  +G R S+  +  V+H+      + ++                  + L  T      
Sbjct: 119 FMAATGARVSELIQIKVEHINIGYLDLYSKGGKLKRIYIPLALQQESREWLDKTNKLSGF 178

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311
            F+N   +++     +   K  A +  +       H  R   A    +       L    
Sbjct: 179 IFLNKYGERITTRGIASQLKILAKRYKLEPKVVYPHSFRHRFAKSFLERFNDIAFLADLM 238

Query: 312 GWKTVDQAETYTKGADRIRLGI 333
           G ++++    Y +     +  I
Sbjct: 239 GHESIETTRIYLRKTATEQQAI 260


>gi|126652628|ref|ZP_01724792.1| site-specific recombinase, phage integrase family protein [Bacillus
           sp. B14905]
 gi|126590619|gb|EAZ84736.1| site-specific recombinase, phage integrase family protein [Bacillus
           sp. B14905]
          Length = 422

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 94/350 (26%), Gaps = 47/350 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINS 63
           P +      + + ++ FR       G+R         T   A  + L   +   R     
Sbjct: 34  PEIYHYFNENKEKLWMFRHKYYDAAGKRREKKKSGFKTEKAALKALLEVKAATLRGETKH 93

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 T+   +  +            +    + +         G +  +K+     +  
Sbjct: 94  IEHDNLTVAQWLDLWFDMNKGK-WKPATVTQRKGFIKLYFKPLLGSYKLKKLDKVIYQMS 152

Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKE 177
                  +  PS+     +  R+    AV +E +  N       P  + K       T  
Sbjct: 153 FINVLEDRLKPSTIRALHSIFRIAMNAAVAEEIIIRNKLHGAALPSLRDKETEKNYLTPG 212

Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228
            +          E       F  + Y+G+R  ++     +++     +I  ++       
Sbjct: 213 QLSILLDHVKQHEDIAYYSLFLMIAYTGMRKGEALGLQWRNIDFANQTITIERTRGNNGV 272

Query: 229 -----TGTIITVELPDGFMKLLAMTP--------------------IGKETFFINNDKQK 263
                  +  T+++ +  ++ L                             F   +  + 
Sbjct: 273 GSTKTKNSERTIKVDNMVLQQLQSYRTAAKALLLSHGRKLHSDIAKDDSFIFLSPHTAEP 332

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312
             +T  +  F       G+   + HG+R   ATI  +       +    G
Sbjct: 333 FVSTGLNAIFNRFVEAVGLPATTIHGLRHTHATILMNNSIPVKAIAERLG 382


>gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633]
 gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633]
          Length = 615

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 81/257 (31%), Gaps = 23/257 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           L        +    +  ++ ++     +     G       T++ +R     ++      
Sbjct: 16  LRQRLIDDMNMRHFSRETQRNYIRDVGRFAAFLG-RPPDTATSEDLRRFQVEQREAGMPI 74

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    ++++R  F   + +  +       + R K+  +     +++++ +     +   
Sbjct: 75  PTMNSVVSALRFFFTHTLDRPDL----ARRLVRMKQMRKLPVVLSRDEVARLLGATTC-L 129

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMT 248
           + + A      +GLR  +     V+ + +    ++ ++          LP   + LL   
Sbjct: 130 KHQAALSVAYGAGLRVGEVAMLKVRDVDSERMLLRVERGKGGQYRNAMLPADLLTLLRQW 189

Query: 249 P----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                           F   +  + ++  Q        A  AG+ K  S H +R   AT 
Sbjct: 190 WKLGREQGVMHHDGWLFPGLHAMKPISTRQLHRIVVEAAQAAGITKRVSPHTLRHSFATH 249

Query: 297 SADAGATAHELMATYGW 313
             + G     + A  G 
Sbjct: 250 LLEDGTDIRIIQALLGH 266


>gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608]
 gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 93/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + +++ +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYKTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      +++       +        T  + +  +
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      N +        +     ++ A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 399

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/374 (11%), Positives = 85/374 (22%), Gaps = 56/374 (14%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
             Y +    G+R  +                       +Y         T+  L+  Y  
Sbjct: 25  YQYRYTDIRGKRQTVYSSDLKELREKEKEIQKQLDDGIDYA----AGKITVIQLLERYIS 80

Query: 81  SAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTP---SSAIQF 136
                    N++  +    + I ++  G    R I     +  +          S     
Sbjct: 81  LKQGARY--NTKAGYNFVLNLIKKEDFGYRQIRDIKVSDAQKWIMKLHSDGKGYSMITSV 138

Query: 137 LTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---Q 191
              ++  F+  +              V+     ++     T E  + + +F  E     +
Sbjct: 139 KGVVKPAFQMAYNEDIIRRNPFDFKLVDVVSNDSQKRIAMTDEQQKIWMNFIREDKTYCK 198

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------IT 234
               F  LL +G+R S+ C      L      I                           
Sbjct: 199 YYDEFVVLLGTGMRVSEFCGLTKSDLDFENRRICVDHQLVRERGGKYYVEKTKTECGIRF 258

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQFSIWFKAKA 277
           + + D   + L      +            +                   +     K   
Sbjct: 259 IPMTDDVYQSLKNILANRRKMKKEIIVDGYSGFILIDKDCHPKVALHIENEMRWAMKKYK 318

Query: 278 TKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332
                    + + H  R    T  A+ G     L    G+  V      YT  +      
Sbjct: 319 KLHPEQPFPHITPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHASYDR--A 376

Query: 333 IKNSRRISSVVDSD 346
            +   +I  + +  
Sbjct: 377 AQQMAKIVDLSEQR 390


>gi|218704611|ref|YP_002412130.1| phage integrase [Escherichia coli UMN026]
 gi|293404493|ref|ZP_06648487.1| integrase [Escherichia coli FVEC1412]
 gi|298380268|ref|ZP_06989873.1| prophage lambda integrase [Escherichia coli FVEC1302]
 gi|300900694|ref|ZP_07118845.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218431708|emb|CAR12590.1| phage integrase [Escherichia coli UMN026]
 gi|291429079|gb|EFF02104.1| integrase [Escherichia coli FVEC1412]
 gi|298279966|gb|EFI21474.1| prophage lambda integrase [Escherichia coli FVEC1302]
 gi|300355816|gb|EFJ71686.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 380

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 101/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSEITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F+S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno]
 gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 85/288 (29%), Gaps = 20/288 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            ++      G  + ++   +E+ +  +           D  ++++T   I       K  
Sbjct: 122 EDFALMVEKGVRSYSTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLKIN 181

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   ++  +  + + A+ +  +  NP  +      + +      +E     +  
Sbjct: 182 KSLTHNTIWVYMMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGYLLREEVETLLQYH 241

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S    R  F F  ++G    D  +    HLQ+     K        +    +  + 
Sbjct: 242 PKSASAELVRDLFVFSCFTGFSYIDIKQLKKSHLQSFFDGNKWLIKRRQKSDVPCNVRLL 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +A   I K       +      +  +     +       +      S H  R    T+ 
Sbjct: 302 DIAEKIIEKYEGTTRTEALFPTPSNTNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G     +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 362 LTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|167912959|ref|ZP_02500050.1| shufflon-specific recombinase [Burkholderia pseudomallei 112]
          Length = 362

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 97/350 (27%), Gaps = 44/350 (12%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           TR G + +  R +  G  +++   +      A+   +     +  +++    + TTL   
Sbjct: 5   TRRGDLQWQARVRRKGYPVQIKTFNTRAEAEAWARLIESEIDRGVFVSRAEAESTTLAEA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KH 128
           +  Y +             S    +              + +  I    +          
Sbjct: 65  LDRYDREIAASKKGYVQEASLLRIWK--STVIASRPMASVRSADIAKLRDDWLKQANPPL 122

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            P+S ++ L  +  +F  A ++  +    NP   V +P       R    E   +     
Sbjct: 123 KPASVVRRLAVLSHVFSIARKEWGMESLLNPLELVRKPPANNARTRRIAAETDTESGRQT 182

Query: 187 SEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII 233
             G   R                 + + +R  +      +H+        +   K G+  
Sbjct: 183 EAGELERVVEASGSDLLPAIIWLAVETAMRRGEIVDLQWEHVDLRRRVAHLPETKNGSSR 242

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG------------ 281
            V L    +++L       +T   ++    + +   +  F+    +A             
Sbjct: 243 DVPLSTRAVEVLKEQRKAAKTRCDDDRVFPIRSDAVTRAFERAVERARAIYVTECRDAGK 302

Query: 282 -------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   +   H +R  + +  A      HEL    G +       Y  
Sbjct: 303 VPSKSYLDDLRFHDLRHEATSRLASI-FPVHELAKITGHRDPRMLMRYYH 351


>gi|158422452|ref|YP_001523744.1| phage integrase [Azorhizobium caulinodans ORS 571]
 gi|158329341|dbj|BAF86826.1| phage integrase [Azorhizobium caulinodans ORS 571]
          Length = 384

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 87/335 (25%), Gaps = 20/335 (5%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M P  + P          G  ++      GR IR      S  + A   A          
Sbjct: 18  MPPKPKAPKHTYWR----GDTLWARFTVAGREIRESLRTGSAKVAARRVAEMREKAVGAT 73

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                +        ++ +         +  +   +        R         I    I 
Sbjct: 74  RFGETRVL--WDDAVTAWASFIPRQVGSPRTVKRYADSLSIAGRHFSTLPIADIDKDAIN 131

Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             V +R+    T ++  + L ++  L  ++  + +   NP L   R  ++         +
Sbjct: 132 RFVAARRAEGVTNATIRRDLQAISSLLDFSEDEGWRDGNPALDKMRRLKEHRDPIMLPDD 191

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
               F     +     +       +G+R  +  RA  +H      S+  +  G       
Sbjct: 192 GDYAFVLSRLQEGHAEMLRAARA-TGMRQDELARAERRHFNAANSSLLVRGKGNKQRTIS 250

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------KAKATKAGVNKS---AH 287
                  +                     T+ +  F       +  A KAG+       H
Sbjct: 251 LSAEAAAIFSRQPVSLACPHIFHHAGKPITKAAFIFSRARRAAQKAAQKAGMEFRGFRFH 310

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A     +G   + L       +V   E Y
Sbjct: 311 DMRHLYAVEFLRSGGDIYTLKEHLRHSSVKTTEMY 345


>gi|157325322|ref|YP_001468742.1| gp38 [Listeria phage B054]
 gi|300765819|ref|ZP_07075793.1| integrase [Listeria monocytogenes FSL N1-017]
 gi|66733327|gb|AAY53143.1| gp38 [Listeria phage B054]
 gi|300513396|gb|EFK40469.1| integrase [Listeria monocytogenes FSL N1-017]
          Length = 391

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 111/380 (29%), Gaps = 48/380 (12%)

Query: 10  FVTKERTRHGKII-YYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            + +  T+ GK      R         I             Y + +      ++      
Sbjct: 13  GIYEYMTKKGKRYGIRVRYKQGNDYPEISKSGFETIAAAKVYKNNIENLKANKKEYVF-T 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +  TL    + Y +     + + ++  + +  Y + +    G++    I+       + 
Sbjct: 72  NEKLTLNTWFATYMEMFKKKNKSKDTIANKYSIYNNHLEGPFGNYYLTDISLGIYEDFLR 131

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKE 177
            +    +  +S       M+ +   AVR E +  N     E  + +   +       T+E
Sbjct: 132 EKIKNGYANNSVKAMHKLMKSILNSAVRYEKLEKNRLQFAEIEQLEENEVIELKILETEE 191

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
                 +  +  ++      +L   G+R  +     +++L  +    +            
Sbjct: 192 FNVFISACRAFFTKYDFTMIYLAVWGMRRGEVMGVKIKNLTFDDAKQQVRITLDSTRTLR 251

Query: 226 ------TQKTGTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKM 264
                 T+       + +     +LL  +                     F      +  
Sbjct: 252 TPEGKGTKTPAGRRILLIDGEGYRLLKYSVEKAVSIAKDHGAVLHQDDFIFRNPTSNRPW 311

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             T+ +   +    +  +    H +R    T +  AGA +++L    G K  D  + Y  
Sbjct: 312 AVTRMNDLLRKLEKEYDIKVYPHLLRHNFNTQALLAGANSNDLRKFIGHKNSDMTDHYAH 371

Query: 325 GAD--RIRLGIKNSRRISSV 342
             D  R +L      R+S +
Sbjct: 372 ATDEGREKLMNTMKDRLSGI 391


>gi|330833786|ref|YP_004402611.1| integrase family protein [Streptococcus suis ST3]
 gi|329308009|gb|AEB82425.1| integrase family protein [Streptococcus suis ST3]
          Length = 390

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/388 (11%), Positives = 105/388 (27%), Gaps = 56/388 (14%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
           +T+ + ++G  +Y            G++++          +         +         
Sbjct: 5   ITEVKKKNGATVYRASVYLGIDAITGKKVKTNVTGRTKKEVKNKTQQAIATFKTDGATRY 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                T+ K L   +  S    ++  N+R +        +I   G +   K+TT  ++S 
Sbjct: 65  QNATITSYKELAELWWNSYK-HTVKPNTRGNIRGLLKNHVIPLFGAYKLDKLTTPLLQSI 123

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           V       ++          +     + + ++ V  + +  NP   V  P+   +  R  
Sbjct: 124 VIKLADKANTGEAGAYLHYDKIHALNKRILQYGVVMQVLPYNPAREVILPRNAKKATRKK 183

Query: 175 TKEDMQQFKSFW-----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            K    +    +                    ++FLL +G R ++        +  N  +
Sbjct: 184 VKHFNDEQLKQFLGYLDGLDLTNYRNLYEATLYKFLLATGCRINEVLALHWSDIDLNNAT 243

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---------------- 267
           +   KT               +    I  +T  +  + ++                    
Sbjct: 244 VSITKTLNRYGSINSPKSNASIRDINIDSQTVAMMKEYRRRQIQEAWTLGRSETVVFSDF 303

Query: 268 --------QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                           +    G+     HG R   A++  ++G    EL    G   +  
Sbjct: 304 IHDYPEDKTLGNRLTTRLRNIGLPNIGFHGFRHTHASLLLNSGIPYKELQHRLGHSRISI 363

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVDS 345
               Y+  +                + +
Sbjct: 364 TMDIYSHLS--KENAKNAVAFYEKALGN 389


>gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 337

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 78/308 (25%), Gaps = 43/308 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKITTKH 118
           L   +  Y  S      + +++ +++                           RK   + 
Sbjct: 16  LHEWLEYYVPSIKA--CSPHTKRNYKISVTLYAEFLKKVKGILPETLNAECFCRKYIMEW 73

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--- 175
           I      R  T ++    L+++R   K+   ++   +   L  E    +    R      
Sbjct: 74  IIWMKSDRNCTFATCNVRLSALRAFLKYVADRDMTYMAVFLQAENIPNEKTPKRKVIGLS 133

Query: 176 ----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               K  +       + G +       L  + +R ++     + ++  +         G 
Sbjct: 134 KKAVKAILSVPNQRTATGFRDFTLMLLLYSTAIRVNELLTLKISNIVMDCTKPHMIVIGK 193

Query: 232 IITV-------ELPDGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKA 277
                      +      + L                         M+A   +   K  A
Sbjct: 194 GRKKRPLPLLSQPVQCLKRYLKKYHPKYNDMDALIFYSKSKGVYAPMSAENVNKMLKKYA 253

Query: 278 TKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329
             A        +N  AH  R   A+   + G    ++    G + +     Y     ++ 
Sbjct: 254 LIAHETCEDVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQE 313

Query: 330 RLGIKNSR 337
              ++   
Sbjct: 314 EKALETLE 321


>gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium]
 gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|290960010|ref|YP_003491192.1| integrase [Streptomyces scabiei 87.22]
 gi|260649536|emb|CBG72651.1| putative integrase [Streptomyces scabiei 87.22]
          Length = 412

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 116/398 (29%), Gaps = 61/398 (15%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            P+ R   ++  +   HG++    R       R         + A +  L      +   
Sbjct: 10  QPNGRSSIYLGNDGKWHGRVTVGTRDDGKPDRRHVERKTRAEVTAAVRELEKQRDAKTVR 69

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
              R  P T+   ++ + ++    ++  N+ + +       +I   G     K++ +HI 
Sbjct: 70  KPGR--PWTVTAWLTHWIENVAPLAVNDNTMVGYGVAVRKHLIPGLGAHRLDKLSPEHIE 127

Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                        ++A Q   + RV    AVR+ ++  NP    + PK     + P+T  
Sbjct: 128 VFYAKMQANGSKAATAHQVHRTFRVALNEAVRRGHLGKNPVQLAKAPKVGDYEVEPYTVA 187

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIK 225
           ++Q+      + S+    +   L  GLR  +      + +            ++      
Sbjct: 188 EVQRLLRAAGQ-SRNSARWAVALALGLRQGEVLGLQWEDVDLDAGFLMVRRSRHRPQYAH 246

Query: 226 TQKTGTIITVELPDGF---------------------------------------MKLLA 246
                                                                   +   
Sbjct: 247 GCAEPCGRKAGYCPQKRRSNPETSTTKSRAGRRAVGLPEQLVDLLRAHRTAQDTEREAAG 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
              +     F + + +  +       +KA    A + +   H  R  +AT+    G    
Sbjct: 307 TKWVDGGLVFPDENGRSPSHRTDWAEWKALLAGAKIRDGRLHDARHTAATVLLILGVPER 366

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
            +M   GW T   A  Y    D +R     +R++  ++
Sbjct: 367 AVMGLMGWSTTAMAARYQHMVDAVR--ADVARQVDGLI 402


>gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 75/302 (24%), Gaps = 48/302 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           L+   R++      +  +  ++  +  + I         ++    I   +       K +
Sbjct: 18  LMDRLREALCSRHYSRRTEQTYCHWVKRFIFFHKVRHPAEMAEPEINDFLTHLAVKEKVS 77

Query: 130 PSSAIQFLTSMRVLFKWAV-------------------------------------RQEY 152
            S+  Q L+++  L++  +                                      +  
Sbjct: 78  ASTQNQALSALLFLYRHVIGREVGDLGKVIRARKPTRLPVVMTRDEVKAVLSNLSEDKWL 137

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCS 207
           +A     +  R                 +      +G++ R+     L        LR  
Sbjct: 138 IASLMYGAGLRLMECLRLRVQDIDFSRNEILVRDGKGAKDRITMLPELLKKPLQDHLRKV 197

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
            +              +                +  +       K T      +  M+ +
Sbjct: 198 KAIHEKDLAEGWGRVQMPDALDRKYPNAPADWRWQWVFPQENRWKNTKTTEEGRHHMDES 257

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K   T +G+ K A  H  R   AT   ++G     +    G K V     YT  
Sbjct: 258 IMQRTVKEAVTSSGITKRASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTMIYTHV 317

Query: 326 AD 327
            +
Sbjct: 318 LN 319


>gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
 gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter
           butzleri JV22]
          Length = 350

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 32/263 (12%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAI 155
               +   G    ++I  + +   + S   +    S     +  +   F +  +Q     
Sbjct: 83  LYNFLINLGLASMKEIDEELLSDFLASETSSLSDASKKNHRIALLS-FFSYIDKQNQNED 141

Query: 156 NPC----------------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                                 + P    +       + +  F+   + G + RL  + +
Sbjct: 142 GSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDRFLKAIDDFEFTDNTGFRNRLIIKII 201

Query: 200 LYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIG 251
           +Y+G+R S+     ++ +    N        K      V +    ++      L M    
Sbjct: 202 IYTGIRVSEILNLRIKDIFKEDNVYMLQIKGKGNKPRVVMIKSSIIEKELQNWLDMRVCN 261

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELM 308
            +    N   +++     S   +     AG+ K    AH +R   AT+          + 
Sbjct: 262 SDLLVCNQKGERLTQAYISRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHDLILVQ 321

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G   ++ +  YT   D+ RL
Sbjct: 322 EALGHADINTSRIYTH-FDKERL 343


>gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34]
 gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like
           protein [Cupriavidus metallidurans CH34]
          Length = 336

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 78/302 (25%), Gaps = 40/302 (13%)

Query: 74  LISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS-- 121
           +I  Y          L  +S  S+       +                  +    +++  
Sbjct: 9   IIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLDYPAVQAFL 68

Query: 122 --GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176
                 R +  S+  Q L ++ V +++  R     +     V     K       T    
Sbjct: 69  HSMEADRGNAISTRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPRPEMTFLGR 128

Query: 177 ----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTG 230
                      +     S+ R     L  +G R S+     V+ L     +      K  
Sbjct: 129 DEVQAMFACIPAQHRLSSRDRALLMLLYNTGARVSEVAHLKVEQLDLRSPARVRLLGKGS 188

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINND-------KQKMNATQFSIWFKAKAT----- 278
              T  L +   K L      + T             +  M         +  AT     
Sbjct: 189 KWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRHYATLWEAS 248

Query: 279 ---KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
               +    + H  R  +A    ++G   + +    G   ++    Y +    IR+  + 
Sbjct: 249 GHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEIT--IRMKAEA 306

Query: 336 SR 337
            +
Sbjct: 307 LK 308


>gi|77410891|ref|ZP_00787248.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|77163109|gb|EAO74063.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae CJB111]
 gi|319746121|gb|EFV98394.1| phage integrase family prophage Sa05 [Streptococcus agalactiae ATCC
           13813]
          Length = 394

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 116/389 (29%), Gaps = 58/389 (14%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           + + + + G +IY         K  G+++        T       A  G+    +  ++ 
Sbjct: 9   INEVKKKDGTVIYRASVYLGTDKVTGKKVTTKITG-RTKKEVREKAKQGAVEFIKNGSTR 67

Query: 65  RKKP--TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            K    T+ + L + +  S    ++  N++++ E      +I   G +   K+TT  I+S
Sbjct: 68  FKATSVTSYQELATLWWDSYK-HTVKYNTQLATEKLLTVHVIPIFGAYKLDKLTTPLIQS 126

Query: 122 GVESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---- 169
            +       +           +     + + ++ V  + +  NP   V  P+   +    
Sbjct: 127 IINKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTK 186

Query: 170 --GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL----- 217
                   +           + S+ R  +E  LY     +G R +++       +     
Sbjct: 187 RVKHFENDELRTFFNYLNNLDKSKYRNFYEVTLYKFLLATGCRINEALALNWSDIDLDNA 246

Query: 218 --------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------N 258
                            +   +   +++    + +L      +                +
Sbjct: 247 VVHITKTLNYKQEINSPKSKSSYRDIDIDSQTITMLKQYRRRQIQEAWKLGRSETVVFSD 306

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
              +  N        +    +A V     HG R   A++  + G    EL    G  T+ 
Sbjct: 307 FIHKYPNNRTLQTRLRTHFKRANVPNIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLS 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVDS 345
                Y+  +       K      + ++S
Sbjct: 367 MTMDIYSHLS--KENAKKAVSFFETAINS 393


>gi|223933220|ref|ZP_03625211.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223898150|gb|EEF64520.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 385

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 107/374 (28%), Gaps = 54/374 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T+ G + YY R+G   +G +         +   A    L     +  +
Sbjct: 5   KTKYP-NIFTYETQKG-LRYYVRRGYFVNGDKKEFTKSGLRSLKDA-QRILRDIEERIYH 61

Query: 61  INSPRKKPTTLKWLISEY----RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKIT 115
                    TL      Y     K+  W   ++ +    + +       K G+   +KI 
Sbjct: 62  DEMDVNLELTLNEYWEIYSAKKEKTGQWNDTSIYTNAGIYRTMIK---EKWGNLPLKKIN 118

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                  +     ++  +S +     +  +   AV+   +  N    +   + + E +  
Sbjct: 119 RNDYEEHLAEMLGQYRRNSVLTSNRLLNSILNDAVKNGNLRQNKLSGIYLGESELEPLNK 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             K D  Q     +E       F F+  +  GLR  + C      +  +  +        
Sbjct: 179 ELKIDDFQTWIKTAEELLSTTHFAFVYLTIFGLRRGEVCGIRFMDVTFDSNNRAVLNIRD 238

Query: 232 IITVELPDGFMK------------------------------------LLAMTPIGKETF 255
             +    DG  +                                    ++          
Sbjct: 239 SRSNRTKDGAGRTKTESSVRYVVLNDRGSELLLQIMETAKQVKKKADVIVEQEKDYLSIR 298

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
             NN          +  FK  + + G+  + H +R F  T S  AGA   ++M   G  +
Sbjct: 299 IKNNKYYLERPAFLNKIFKRVSEECGIYITPHIMRHFFTTQSLIAGARPEDVMHFLGHAS 358

Query: 316 VDQAETYTKGADRI 329
           +   + YT   +  
Sbjct: 359 LQTTKQYTHIKEER 372


>gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 93/272 (34%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + +++ +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYKTVYKHLQEFLSIRYRVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETVRSFLTKEEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      +++       +        T  + +  +
Sbjct: 237 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      N +        +     ++ A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKRIIDKYRGLCGNGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 76/259 (29%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  + K     + + N+   +    +Q          R +    +        + P +  
Sbjct: 13  LDLFEKYLVARNKSPNTICVYRYAVEQFYHLYPQLTPRNLQLYKVYLLE---HYKPQTVN 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    ++  RQ  +     + +++     + I     E +++      E +   +
Sbjct: 70  LRIRALNCFMEY--RQTSITPITMIKIQQKTYLDKIISQADYEYLKRKLVENEEFTYYFI 127

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIG 251
                  +G+R S+     ++ +      I ++                F +        
Sbjct: 128 VRLIT-TTGVRVSELITFQIEDIDRGHKDIYSKGNKMRRIYVPTQLGIEFKQWFQHIGRR 186

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
               F+N     ++ +     FK  A +  ++      H  R   A    +       L 
Sbjct: 187 SGHLFLNRFGSPLSPSGIRAQFKVFAARYHLDPEVMYPHSFRHRFAKNFIEKCGDITLLS 246

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y + + 
Sbjct: 247 DLLGHESIETTRIYLRRSS 265


>gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
 gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855]
 gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
 gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA]
 gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 73/258 (28%), Gaps = 14/258 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---Q 135
           RK      L  +++ +  +    +       ++  +T   +    +    +        +
Sbjct: 111 RKEIMSSQLKDSTKRNHLTTISLLQSFKPTIEFEDLTYNFVTDFEKFLYDSDYQTNTVAK 170

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL- 194
            +  ++     A+ + Y+  N         +  EG   +   +  +     S   +    
Sbjct: 171 HMKHLKSFVNAAINKGYIDPNNYAFRRYKIKMKEGKHVFLLPEEMKKLEEVSLIGRNSCL 230

Query: 195 -----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                AF F  Y+GLR SD      +++      +           E+      L     
Sbjct: 231 EHTLDAFLFCCYTGLRYSDFVSLNEKNIVKMDGKLWLIFDSVKTGAEVKLPLSLLFEGKA 290

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKAT-----KAGVNKSAHGVRKFSATISADAGATA 304
           +     +        +    S   K         +   + S H  R  +AT+    GA  
Sbjct: 291 LTLLQKYQGKWSSFFSIKNNSSVNKELIRIGKLARINKHFSFHSARHTNATLLIYKGANI 350

Query: 305 HELMATYGWKTVDQAETY 322
             +    G K +   + Y
Sbjct: 351 TTVQKLLGHKNLATTQIY 368


>gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482]
 gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482]
          Length = 200

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 7/168 (4%)

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               + +E    R AF F LY GLR  +      +++      +K +++           
Sbjct: 34  MACHYDNENPTVRQAFIFCLYCGLRFCNVKDLTFKNVDYANRLLKFEQSKAKEHSASSGV 93

Query: 241 FMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
            + L   L        T                   K    +AG++K  S H  R   A 
Sbjct: 94  VIPLNDGLLSIIGEAPTDKNCLIFDLSTYESCCKSVKRWVKRAGIDKHISWHLARHSFAV 153

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              + GA    + +  G   +   E YT+  D  +L  +    +  + 
Sbjct: 154 NILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 199


>gi|70732300|ref|YP_262056.1| phage integrase family site specific recombinase [Pseudomonas
           fluorescens Pf-5]
 gi|68346599|gb|AAY94205.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens Pf-5]
          Length = 413

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 82/347 (23%), Gaps = 31/347 (8%)

Query: 10  FVTKERTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            +       G   +  R             G    +               ++      E
Sbjct: 33  GLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAAELRKTISSGIDPLE 92

Query: 60  YINSPRK-----KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
              S +      K  T +     + K+     LA ++     +Y D+ I+   GD    +
Sbjct: 93  QKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGLAPSTLNKIRTYLDKDILPALGDKPLDE 152

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT         S +     + A +  T +  +F  A+       +P   +     +    
Sbjct: 153 ITRTDCAELQASIEARDAHNVAEKCRTWINQIFGRAIGLGLTENDPGSRLRDIAAQAPKT 212

Query: 172 RPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
           +           +              R A    +++  R      A  +    +     
Sbjct: 213 QQHPHLLEPELGEFLTALKNTPSRLTARTAAWLCIWTASRPGMVRLAEWKEFDLDKATWT 272

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKA 280
                  +    +     + +A           +          N T             
Sbjct: 273 TPAAKMKMRRDFVCPLPHQAIAALKELHCLTGRSRWLFPGVGAKNPTISENTINKVFATI 332

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           G       HG R  ++T+  + G     + A    K    +  Y K 
Sbjct: 333 GYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEGISGVYNKA 379


>gi|15900995|ref|NP_345599.1| phage integrase family integrase/recombinase [Streptococcus
           pneumoniae TIGR4]
 gi|111658171|ref|ZP_01408867.1| hypothetical protein SpneT_02000651 [Streptococcus pneumoniae
           TIGR4]
 gi|14972606|gb|AAK75239.1| integrase/recombinase, phage integrase family [Streptococcus
           pneumoniae TIGR4]
          Length = 387

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 109/362 (30%), Gaps = 52/362 (14%)

Query: 10  FVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + ++  ++G+ +YY        +    +            +         +     Y  
Sbjct: 2   NIKEKIKKNGQRVYYASVYLGVDQLTGKKARTTVTATTKKGVKVKARDAINTFAANGYTV 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             +   TT   L+  +  S    ++  N+R S E      ++   GD+   K+TT  ++ 
Sbjct: 62  KDKPTITTYNELVKVWWDSYK-NTVKPNTRQSMEGLVRVHLLPVFGDYKLSKLTTPILQQ 120

Query: 122 GVESR------KHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-- 171
            V             + A   L     + + K+ V  + +  NP   V  P+++ +    
Sbjct: 121 QVNKWADKANKGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKEKAA 180

Query: 172 -RPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            +    ++++QF  +         E     + ++ LL +G R S++       +      
Sbjct: 181 VKYLDNKELKQFLDYLDALDQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLESGV 240

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------N 259
                           + +     + +    + LL      ++                 
Sbjct: 241 ISINKTLNRYQEINSPKSSAGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSVF 300

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   A             AGV N S HG R    T+   A  +  ++    G   +  
Sbjct: 301 TEKYAYACNLRKRLNKHFDAAGVTNVSFHGFRHTHTTMMLYAQVSPKDVQYRLGHSNLMI 360

Query: 319 AE 320
            E
Sbjct: 361 TE 362


>gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3]
 gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 91/292 (31%), Gaps = 30/292 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ R      G  D    ++T + IR+     K     
Sbjct: 121 METLAGIDYSPVTINRYKNVVKKLQRLIPSYYGKEDVTFHELTPEFIRAFDIYLKTEGGL 180

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 181 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQTLMKKKFT 239

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G I             
Sbjct: 240 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISN 299

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 300 IPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 359

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RISS 341
             T           ++    G  +    + Y +  +  ++  + N + R++ 
Sbjct: 360 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 411


>gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 332

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 95/297 (31%), Gaps = 42/297 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+ +I  Y        L  ++ I+++     ++       G  +  KIT  H+R  +   
Sbjct: 3   LQEVIKHYIVDVENR-LGHHTSIAYQQALGYLVSLLSSVCGVNELEKITVLHLRECLRYM 61

Query: 127 KHTPS-----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             TPS                 +   ++T+ +V F W  ++E +  +P   ++ P+ +  
Sbjct: 62  IETPSEVIRQRTFGKKSNLADSTMKTYVTNWKVFFNWCYQEELIDSDPSARLKTPRPEKR 121

Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ++ +T E + +           G +  +    LL +G+R S+     ++ + +    ++
Sbjct: 122 VLKTFTSEHIYKMLDTLDLSTDMGFRDYVILLLLLDTGIRLSEIGTLLLEDVHDTYIKVR 181

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWF 273
            +       V +     KLL                            + ++        
Sbjct: 182 GKGR-KEREVGIHPDLGKLLWKYVHKYRHPGNPDEPKIFIDCTKQGKGKAISGPGVKGIL 240

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                  G      S H  R   A +    G    +L    G  +V   + Y +  D
Sbjct: 241 YRLRLALGFKDVRLSPHTFRHTFAKMYMAHGGDIFKLSREMGHSSVRITQRYLEDFD 297


>gi|213649960|ref|ZP_03380013.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 382

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIR 120
              R K  +L   + +Y  +        + +  +      +      +    +ITT  I 
Sbjct: 3   RPQRIKKMSLSKALDKYYATVSVHK-RGHQQEFYRVRVIQR--HPLAEKMMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T ++ ++   ++ E        F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPM 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L      LL    +       +      +++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARHLLQGMTVALSGNVFHY-----SSSGFKSAWRVALQRLNIVDLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   RR +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|29377035|ref|NP_816189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|29344501|gb|AAO82259.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
          Length = 379

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 96/340 (28%), Gaps = 48/340 (14%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G++ R      +          +                 TLK +   Y +  +  +L  
Sbjct: 22  GKQRRKRLTVSTK--KEAQQIESKYLRLYHENKLTTNSDLTLKDIYEVY-EEKYTQNLKP 78

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTS 139
           + + + E  F   I     +   + I  + I    +             +  +    +  
Sbjct: 79  SYKQTQERIFKNYIEPYFKNTQIKLIKKQQIYDFQQFLLTSKPKRKETLSNKTINMIIIH 138

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEF 198
           ++ LF  A+++     NPC  +++ K + + I  WT ++   F S   +     ++ ++F
Sbjct: 139 LQKLFNVAMKEGLSYENPCNQIDKLKVQKKEIDFWTLDEFTTFISHIDKNKPFLKVFYQF 198

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------IITVELPDGFM 242
             ++G+R  +        +     +++  K+                     + +     
Sbjct: 199 AFFTGMRAGEMIALTWSDIDFYNQTVRINKSAKLINGNYVTTTPKTESSNRYITINSKIT 258

Query: 243 KLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGV---NKS 285
            +L      +                      ++  ++  +S   K    K  +      
Sbjct: 259 AMLKKWQEIQPKLLIDNFQNIDSDKLLVFQYSEKHPSSDYYSKQIKKIIVKNNLNLKPIR 318

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
            H  R     +          +    G  ++    +TY  
Sbjct: 319 LHDFRHSHVALLIHNNEKNTTIKERLGHSSITTTIDTYGH 358


>gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608]
          Length = 409

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDILIKE-KESHIGIDIKEGSMSAYYSTRKRLQEFIQKKYYVSDLAFSQLTENFIYELQA 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  H  S+  +    ++ + + A R+          V   +   +  +   +E + 
Sbjct: 173 FCLGELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKTPKALDQEALD 232

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                +F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKALRFDELEEEMETARDVFLFACYTGAAYCDLMGLSKKHLVRDDEDCLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +        +    +    KA   +AG+    ++H  R
Sbjct: 291 TGVLCRIKLLPEAVRLIEKMHSDERETLIPHIKYPTYQSCLKALRLRAGISFPFTSHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 390


>gi|149196782|ref|ZP_01873835.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
 gi|149139892|gb|EDM28292.1| prophage DLP12 integrase [Lentisphaera araneosa HTCC2155]
          Length = 397

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 87/336 (25%), Gaps = 30/336 (8%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMS----------ALTGSTPKREYINSPR 65
           + G   Y  F     ++                            L  +    +      
Sbjct: 12  KRGDTYYLRFSVNGKKKTVSRKTKNKLEADKKAKDLLAPSKANSELEAAEFIAKAKGLVS 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120
            K   +K   S Y KS         + + +  Y+ ++++             +I      
Sbjct: 72  DKRIPIKDGWSIYNKSKKRLDSGDLTLVRYSQYWSKLVKFLEKHYSNLEYVDEINAAMAD 131

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +E+      +  ++   ++  F    ++  V INP       +++ +  R    E++ 
Sbjct: 132 EFLENLTVASGTYNKYNNFLKRYFMTVGKECGVHINPFDGFATKRQQKKSWRELNSEEID 191

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
                    S         +Y+G+R  D+       +  +   +    + T         
Sbjct: 192 --LLKNLPKSDDWALCNIGIYTGMRLKDAALLKWADIDLDRDILTFMPSKTAKQEKVIQL 249

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHG 288
            I  EL   F+ +                    +    S + +   T   +       H 
Sbjct: 250 PILSELKKIFLWIKQKGKPSVYLLPQMAALYSRDQYSLSRYIQDLFTDLKITDGKVGFHS 309

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            R    +  A  G     + A  G  +      YT 
Sbjct: 310 FRHTFVSECAKNGVPQSIVQAIVGHGSPAMTRHYTH 345


>gi|317009814|gb|ADU80394.1| bacteriophage-related integrase [Helicobacter pylori India7]
          Length = 382

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 103/358 (28%), Gaps = 39/358 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGH-----GRRIRLPYPHESTFIP-----AYMSALTGSTPK-- 57
           ++      + +     RK            L Y  + +          + A+  +  +  
Sbjct: 19  YLNYYDKTNKRFRVSLRKATDCLKMKTDEALEYFKDKSLKEILAFVNRLEAIQNANKRVK 78

Query: 58  -REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRK 113
             E      +   T+   +  +  S     L   S  S E+ F+   +++        +K
Sbjct: 79  FAEKRTLKIQSKITILQALKRFL-SLKI-GLKQTSINSLENVFNSVFRVMDLKEGDKLKK 136

Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT + I    E   + +  ++      +++    +   + ++  +P  ++     +    
Sbjct: 137 ITQEKIAKYHEETLKHYKKNTIHNLNANLKSFLAFCETERFIEKSPYFAITLKNAQEAKA 196

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                    +     +   + +       ++GLR  +      + +  N  +I   K+  
Sbjct: 197 IDPFSLKEIKLLIKNAPSLRLKAFLMVAFFTGLRTGEQLALMWEDIDFNEKTIIINKSLN 256

Query: 232 I-------------ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                           V+L +   K+L                     ++ F   FK   
Sbjct: 257 ELGQITSPKNKPSVREVDLLEPVEKILKELKESEPANKKFVFIDMPKRSSVFQRHFKKLL 316

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA----ETYTKGADRIR 330
               + ++  +  R   A++    G  A  +    G K ++        Y    D+ R
Sbjct: 317 KALNLEDRKLYTTRHTFASLMLSQGEEAMWVSKMLGHKDLNTTYKTYSHYIHKQDKER 374


>gi|317502290|ref|ZP_07960460.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896308|gb|EFV18409.1| hypothetical protein HMPREF1026_02404 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 406

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 111/409 (27%), Gaps = 72/409 (17%)

Query: 1   MTPSLRLPPFVTKERTRH----GKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M  S + P         +    G+  Y +     G+R+ +                    
Sbjct: 1   MAISRKDPKGRKLREGENWRNDGRYSYRYTDVRTGKRLTVYAQDLPELREKEKQI--AKD 58

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
            +   +     K  TL  L   Y  +     LA  +R+S+   + +++  + G+    ++
Sbjct: 59  MEDNILTDGAIKKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQL 115

Query: 115 TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRK 167
              HI++            S+       +    + AV  + +  NP         +P  +
Sbjct: 116 LPSHIKAYYAKLSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEE 175

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
            E +    +E   +F    +  +     F  ++ +GLRC +      + +          
Sbjct: 176 KEALTVSQQEKFMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDINIKAKTVNVD 235

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------- 254
                              +    I  + +     K                        
Sbjct: 236 HQLIYKNLGDGCKFHISTPKTESGIRIIPMTQEVAKAFEEQRKINFMLAKDKSIEVDGYS 295

Query: 255 --FFINNDKQKMNATQFSIWF---------------KAKATKAGV--NKSAHGVRKFSAT 295
              F     + +     +                  K +  KA +    SAH +R  + T
Sbjct: 296 GFVFTAKSGRPLMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLPKFSAHVMRHTACT 355

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
             A+       L    G   +D     Y    +  R+  +   R+ S+V
Sbjct: 356 RMAECRMDVKVLQYIMGHAHIDVTMEVYNHIGELTRIENE-IARLDSMV 403


>gi|315038720|ref|YP_004032288.1| integrase [Lactobacillus amylovorus GRL 1112]
 gi|312276853|gb|ADQ59493.1| integrase [Lactobacillus amylovorus GRL 1112]
          Length = 361

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 97/353 (27%), Gaps = 36/353 (10%)

Query: 14  ERTRHGK-----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
              + GK     + +Y      R               + + +  +    + ++    K 
Sbjct: 3   YIRKRGKSWQAQVSWYDLNNERRYKTKSGFATKRQAQKWANEMEVAKSDNQIVD----KD 58

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127
                  S+Y  +      A  +   +      I    G     K+T    +S +     
Sbjct: 59  PIFAKEYSDYVNTYKIQGKAKTTERRYLYSVKVIENYFGKVKLSKVTRHMYQSFINEYGK 118

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKS 184
            H+ ++       ++   +  +  + +  N    +        T  ++    +++++   
Sbjct: 119 DHSKNTMRLINRYIKAFARDCMADKLITTNFTDRINLTWNDENTHKVQYLNYDEIKKLLD 178

Query: 185 FWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
              +G +P    R      LY+G+R  +        +  +   IK  K+ +         
Sbjct: 179 SLEDGIKPSYISRYMIITALYTGMRIGEIMALEWSDIDFDNHLIKITKSYSYTEDKIKDP 238

Query: 232 -----IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGV 282
                   + +    + +L    +  + F       N      A +       K      
Sbjct: 239 KTETSKRVIRVSKKLLDILKQLRVNHQKFVFMSATGNIPTTSAANKTLKKQLKKLKIKKD 298

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
           +   H +R     +    G   + +    G   +   AE Y    D +R    
Sbjct: 299 HFHFHSLRHTHVALLLFKGVPLYSISKRLGHANMSITAEVYAYMLDELRQKAD 351


>gi|312132706|ref|YP_004000045.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773666|gb|ADQ03154.1| Phage integrase family Protein [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 393

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 88/355 (24%), Gaps = 52/355 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
           +  GRR RL      T   A                +P      L   +  +       +
Sbjct: 27  RATGRRRRL-TAQGKTKAVASARLRMKLDAYVRKGLTPNSPSPRLMDWLETWYHERAEAN 85

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFK 145
           L  NSR S+E+   ++ + +G      +  K +    +  K  +P +A    + ++   +
Sbjct: 86  LRPNSRRSYENAIVRLNKIAGARRINSLGHKDMADVQDGLKCYSPKTATLTWSVLKNALE 145

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
            A  +  +  NP   V     +   ++  +                 RL +     +GLR
Sbjct: 146 AARDENLIRRNPAKMVRPVSGRRRPMKVLS-PAQAAELIKAEPDPMWRLNWLLAFATGLR 204

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGT---------------------------------- 231
             +     +  L                                                
Sbjct: 205 QGERLGLTMDELTTLNGRRALVIDHQLQRVPDSRRADWPLGEDVTDLGNGFWLCPPKTDS 264

Query: 232 --------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
                    +     D ++ +     +     F+      ++       +     + G+ 
Sbjct: 265 GERIVVLDDVMCGALDEWLAIRKKKGVDSPMLFVTGRGTPIDRRIEYFHWDKALLRIGIA 324

Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                     H  R  + T+ A+AG      +A  G         Y        L
Sbjct: 325 NGEDGVRLRPHSARHTADTLFANAGVPESARLALMGHSDGAMDNVYLHADTEALL 379


>gi|255974675|ref|ZP_05425261.1| site-specific recombinase [Enterococcus faecalis T2]
 gi|255967547|gb|EET98169.1| site-specific recombinase [Enterococcus faecalis T2]
          Length = 391

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 106/347 (30%), Gaps = 44/347 (12%)

Query: 11  VTKERTRHGKIIYY----FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V  ++ + GK  +     F +  G+R+   R  +        AY   +     +    NS
Sbjct: 5   VKFKKDKRGKYYFTASLGFDEVTGKRVQKMRSGFSTIKEAREAYAEIINNFGKEAYSSNS 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                     +   Y K    G +   +  +  S              + I   HI+   
Sbjct: 65  TMLYEEFFYTIFLPYYK----GRVKERTYNNRLSMIKNTFAYFFKMKLKSIAPVHIQKWQ 120

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQE----YVAINPCLSVERPKRKTEGIRPWTKEDM 179
                       ++ ++  LF+ ++ +      ++ NP   V   K+  + I  WTKE+ 
Sbjct: 121 NELLEQYE--NTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKSKKEIDFWTKEEF 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIK---------- 225
           ++    +      +      ++    +G+R  ++     + +  +   +           
Sbjct: 179 EKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRRYLTVKKSLYYKNA 238

Query: 226 -------TQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWF 273
                   +   +I T+ L +  +  L      ++      F ++ +             
Sbjct: 239 QTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSYNSVPTQKHTVRHII 298

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K  A  A V +   H +R   A++    G  A  +    G + V   
Sbjct: 299 KRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQTT 345


>gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
 gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)]
          Length = 320

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   D GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLDVGADIRTVQEQLGHTDVKTTQIYTHALDR 308


>gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136]
 gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 407

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 79/295 (26%), Gaps = 22/295 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSG-- 122
            +  I  + K     +    +  S+    + +           D  +  +    I +   
Sbjct: 113 FRTFIEHFEKRVGV-NREKGTAQSYRYACNCVAAFIQEKYKLSDVPFTALNRSFIDNYDL 171

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R+    + +  +T +  +   A+ +  +  +P    E    + E  +  T  ++Q
Sbjct: 172 YLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEAEHPEREQ-KYLTAVELQ 230

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           +  +      +       F F  Y+G+   D CR   +   +  +               
Sbjct: 231 RLMTTPLHDPKLYHIRDLFLFSCYTGIPYGDMCRLTTEDLEVAEDGEVWIKTARKKTKID 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                    L +    ++           +  + +   K  A   G+ +    H  R   
Sbjct: 291 YEVPLLDIPLLILDKYRDMAPEGKLLPMYSNNELNRTLKRIAAICGIERKLVFHCGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT      G     +    G   +   + Y K  D         R +   +    
Sbjct: 351 ATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKIDMDT--RSLEEKIAGRF 403


>gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319]
 gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319]
          Length = 421

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 32/319 (10%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY------RKSAHWGSLAVNSRISF 95
            F     + +T    K ++++  +  PT    LI  Y      +++    ++   +  +F
Sbjct: 81  EFTLREENYITAEYLKEQFLHQGKPTPT----LIEIYQSVCESKEALQGKTIEKATVRAF 136

Query: 96  ESYFDQIIRKS-----GDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKW 146
                           GD   ++     I            +  S+    L  +  + + 
Sbjct: 137 RDSRKNFALFLKTRGNGDCLPKEADKDLIEHYRLFMLRDLGNKESTVSNRLRHLHQVIRK 196

Query: 147 AVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           A++Q Y+  +P     +E P  +   +       +  ++   S  +  RL F    ++GL
Sbjct: 197 ALQQRYIREDPFELIDIETPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTGL 256

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINND 260
             SD  +  +  +       +            ++       + +       +   +   
Sbjct: 257 AFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGLLFR 316

Query: 261 KQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKT 315
           +     + F+   +    KAG+      ++H  R   AT I  + G     +    G + 
Sbjct: 317 EFP-TNSHFNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRF 375

Query: 316 VDQAETYTKGADRIRLGIK 334
           +   E Y K   + ++  +
Sbjct: 376 ISTTELYAK-VSKSKIARE 393


>gi|238018872|ref|ZP_04599298.1| hypothetical protein VEIDISOL_00732 [Veillonella dispar ATCC 17748]
 gi|237864638|gb|EEP65928.1| hypothetical protein VEIDISOL_00732 [Veillonella dispar ATCC 17748]
          Length = 281

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 12/273 (4%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   ++   TL+ L +E+    H  +++ ++  S+   F  I     D     I  +H++
Sbjct: 8   LKRRQRNTITLRQLFNEWLP-IHSQTISNSAVKSYHIAFKHISN-IADMSITDIHFQHLQ 65

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           + ++S +      SS  +  T +  LF +A+ ++Y   N  L +     +    R     
Sbjct: 66  NVIDSMRVKGLSYSSCKKVRTLLNQLFNYAIIRDYSVTNYALHLNLGPNRPTIKRRVFTR 125

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                       +        LLY+GLR  +      Q +      +  +   T      
Sbjct: 126 QQINKLWA--IDTSYSRMILILLYTGLRIGELLNLRRQDINRRSSYLIVRHAKTKAGEGR 183

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                  +        T          + T F   F     +     + H  R   A+  
Sbjct: 184 IIPIHHRIMPIIEQLHTSDYLFTI---SYTTFRKHFHNIMKQLNCKHTIHDTRHTFAS-L 239

Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADRI 329
            DA A  + L +  G K  D     YT    R 
Sbjct: 240 LDAVAPPNALRSLLGHKQGDITTRVYTHKTIRE 272


>gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5]
 gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5]
 gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 397

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 93/383 (24%), Gaps = 56/383 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     G   + +         +P           +S        ++ ++      
Sbjct: 24  RYAYKYIDTFGNPQFVYAWK-----LVPTDKTPAGKREDISLREKEKEIQKDLDDGIDTL 78

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++   ++   +     +     G      +     +      
Sbjct: 79  GKKMTVCQLYAKQIRHRANVRHGTKQGRKQLMRILEEDSLGACSIESVKLSDAKEWALRM 138

Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A++ + +  NP         +  TE   P +      
Sbjct: 139 KDKGYSFKTINNHKRSLKAAFYTAIQDDCIRKNPFDFQLNTVLEDNTEPKVPLSPTQEAS 198

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
           F SF        +       LL +GLR S+ C      +      I              
Sbjct: 199 FLSFVQSDKVYQKYYDEIIILLGTGLRISELCGLTESDIDFEHKLINVDHQLLKVSGVGY 258

Query: 230 ------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQF 269
                          ++ ++ + F ++L               +            A  F
Sbjct: 259 HVETPKTKSGIRQIPMSTKVYEAFKRVLNDRGRADNFIVGGYSRFLFLNRNGLPKVAVNF 318

Query: 270 SIWFKAKATKAG------VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F+    K        + K  + H +R    T  A+AG     L    G   ++    
Sbjct: 319 ETMFRGLVKKYNKSHEEALPKVTTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLN 378

Query: 322 YTKGADRIRLGIKNSRRISSVVD 344
           Y   A            +  ++ 
Sbjct: 379 YYAHAT----SDSAMAEMERLIA 397


>gi|262038386|ref|ZP_06011763.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
 gi|261747604|gb|EEY35066.1| site-specific recombinase, phage integrase family [Leptotrichia
           goodfellowii F0264]
          Length = 342

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 106/342 (30%), Gaps = 27/342 (7%)

Query: 5   LRLPPFVTKER---TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            R  PF  +       +GK IY +         + Y                     E  
Sbjct: 18  KRRKPFAVRVTIGWNNNGKQIYKY---------IGYYKTKQEADR------QLVYYNENP 62

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                +  T   +  +++K   + ++  ++++ + + F    +      +  + + H++ 
Sbjct: 63  YDLDIQKITFSEVYEKWKKE-KFETVGHSAQLGYIAAFKS-CKTLHYTRFVDLKSSHLQE 120

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
            + +      S  +       L+ +A++ + V+ +     +  K   E  R     +  Q
Sbjct: 121 IISNPGIKYGSKRKIKVLFNQLYAYAMKNDIVSKDYSKYTDTGKNTEESSRKPFTTEEIQ 180

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELP 238
                 + +        L+Y+G R  +        +  +   IK     + G    V + 
Sbjct: 181 RLWDLVDENDWIDTILILIYTGFRIGELLEIKNTDIDLDNRIIKGGLKTEAGKDRLVPIN 240

Query: 239 DGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
                L+         +       ++   +  +   F+    + G+    H  R   AT+
Sbjct: 241 SKIYNLIKNRMSSDNEYLIVNFKGEKMKYSNYYREKFEPIMEELGMKHRPHDTRHTFATL 300

Query: 297 SADAGATAHELMATYGWKTVDQAET-YTKG-ADRIRLGIKNS 336
            ++A A    +    G  +    E  YT    + +R  I+  
Sbjct: 301 LSNADANKTSVKKLIGHNSYTTTEKFYTHKDIEELRKAIEKI 342


>gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium
           acetobutylicum EA 2018]
          Length = 340

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 74/290 (25%), Gaps = 38/290 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR- 126
           K L  E+ +       +  +   ++S        +++ + +  +  I  K I        
Sbjct: 24  KQLFEEFIQYCEAEDKSKETVRVYKSNIKIFLVWLLKFARNKRFVDIKKKDIMLYQNWLL 83

Query: 127 ---KHTPSSAIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              + +P+        +  +  +       +     N    ++ P ++    +     + 
Sbjct: 84  NTQRLSPARIKHLRAPLSSMSSFVEDILDDEYPEFRNIISKIKPPTKQETREKTVFTNEQ 143

Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229
            +         +          L  SG+R S+  +  V     N    +           
Sbjct: 144 VEKLIEMLIKDKKYQQACFVACLAASGVRKSEILQFKVSFFTENSLDEEGMYHTPKIRTK 203

Query: 230 ----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                 +L     K L +           +       +  + W 
Sbjct: 204 GHGKLGKPLVKFIIKDIVKHAFDLWIEERKQLGIDTDDLFVVKHKDKWYPAKVSTVNGWM 263

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +   G +   H  R ++AT     GAT  ++    G       + Y 
Sbjct: 264 NKFSKIIGEDCYTHAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYI 313


>gi|312971274|ref|ZP_07785452.1| integrase [Escherichia coli 1827-70]
 gi|310336476|gb|EFQ01662.1| integrase [Escherichia coli 1827-70]
          Length = 380

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 101/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F+S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 386

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 97/296 (32%), Gaps = 31/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSG--DFDYRKITTKHIRSGVESR-- 126
           I +Y++     + A ++       +      +  K G  D     +    I+        
Sbjct: 93  IQDYKRQIG-KTKAQSTYQGLVDEYRCLSCYLKDKLGTEDIPLMSLDMDFIKDYYNWMLS 151

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+A + + +++ L   A+ + ++  +P           +     ++ED+Q+  S
Sbjct: 152 VRGLAKSTAFERVNTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVIS 210

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +    R  F F+ +SGL  +D      +++  +           + T       
Sbjct: 211 VKLSYKRQQAIRDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAAYVVK 270

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAG--VNKSAHGVRKFS 293
           +  +A+  I K      +                    K    KAG  V  S H  R   
Sbjct: 271 LLPIAVELIEKYRGVNESKVSPDRVFPVGDVGSMESSLKRIGEKAGCSVRVSPHVGRHTF 330

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           AT++ + G     L    G KT+   + Y         +  DR+R  I    R+++
Sbjct: 331 ATLALNKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKIGGMFRLAN 386


>gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704]
 gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 411

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 100/400 (25%), Gaps = 76/400 (19%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           E  R     Y +      GRR  +     +         +       +   + +    ++
Sbjct: 17  EVQRSSDKRYMYTYTDPMGRRKFIYANDLAELREKEAKLMKDQLDGLDLYVAGKA---SV 73

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV----ESR 126
                 Y  +    +L  +++ S+   +D  +    G      I    +           
Sbjct: 74  NDTFDRYMSTK--YNLRESTKSSYLYTYDHYVRDTFGKKRIADIKYSDVLQFYYYLLNEV 131

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQ 181
           K +  +       +   F+ AVR E +  NP   V         +        T E  + 
Sbjct: 132 KISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALTVEQQRA 191

Query: 182 FKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKT 229
           F  + +        +      L +G R  ++     Q          + +++   +  ++
Sbjct: 192 FMEYIANHPIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSLSYYQKPES 251

Query: 230 GTIITVELPDGFMKLLAMTPI---------------------------GKETFFINNDKQ 262
              +           +   P+                                F N    
Sbjct: 252 NKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGFIFCNRFGM 311

Query: 263 KMNATQFSIWFKAKATKAGVN-----------------KSAHGVRKFSATISADAGATAH 305
             N    +   K  A     +                  S H +R    T   +      
Sbjct: 312 VPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRLCENETNLK 371

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            + +  G + ++     Y +  +  +   ++   +++ +D
Sbjct: 372 VIQSIMGHRNIETTMDIYAEATEEKK--QESFENLAAKLD 409


>gi|134093678|ref|YP_001098753.1| putative integrase/recombinase [Herminiimonas arsenicoxydans]
 gi|133737581|emb|CAL60624.1| putative integrase [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 90.6 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 96/326 (29%), Gaps = 18/326 (5%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            RK    R              + + +        +I+  + + TT   ++  Y+     
Sbjct: 16  VRKKGYPRKT-QTFETRKAAKDWANLVESEMNHGTFIDRSQAEKTTFGDILQRYKDQVVP 74

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
                  ++        +           +         + R  + +  + ++ L  +  
Sbjct: 75  DRR--GYQMDNYRIAKLLKHDLAKRTLSTLRNVDFSKYRDERLQEVSRGTVLRELLLISH 132

Query: 143 LFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197
           +F  A +   +   NP  S+ +PK+     R    ++ ++  +     +          +
Sbjct: 133 VFSTAKKDWSIAVDNPIASIRKPKQGKSRDRRLQGDEEKRLLAAARDSFCRSPTLDFCIQ 192

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L +G+R  +  +     +      I+    K G    V L      ++      +   
Sbjct: 193 LGLETGMRAGEIVQLTSDQIDLQNHVIRLGKTKNGEDRVVPLTTTAEDIIRSMLPSENGR 252

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314
             +       +   S  F+    +A +     H +R  +A+  A        L    GWK
Sbjct: 253 LTSFHD----SNGLSKAFRRACARAEIKGFCFHDLRHEAASRFA-PTMPVATLAKIMGWK 307

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
           T+  A  Y    D   +      +++
Sbjct: 308 TLQMAMRYYNPRDDELVAAVRPAKVA 333


>gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14]
 gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14]
          Length = 365

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 20/260 (7%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSG-----------VESRKHTPSSAIQFLTSMRVLF 144
             +F++  +  G   +R I                      +K + +SA  +  +   + 
Sbjct: 111 RLHFERFCK--GQCKFRDINASLCERFRLYLLRAKGLQHTKKKLSKNSASAYFNAFLSIV 168

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            +A R   ++ +    +E+ K   +  + +  + E  Q   + + +      A  F +Y+
Sbjct: 169 HFAYRDNILSEDYTTCIEKIKWNHDIPKEYLSSAEIKQLASTPYDDNPDVYRAGMFSIYT 228

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
           GLR SD      +++ ++       +     T  L    +  L    +  +         
Sbjct: 229 GLRRSDILALRWENIHHDRGRKAYIRFRIKKTRTLIQLPLS-LPAIRVLGDPKSEGKIFP 287

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +  +  +I      +KA + K  + H  R   A    D G   + + A  G K V   +
Sbjct: 288 MITESILTIHIPRWVSKARIRKHITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQ 347

Query: 321 TYTKGADRIRLGIKNSRRIS 340
            Y K + +    I+   ++ 
Sbjct: 348 NYAKMSSKK--MIEAIVKME 365


>gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
 gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia
           odorifera DSM 4582]
          Length = 372

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 85/327 (25%), Gaps = 24/327 (7%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            +   GK +   Y     GRR+R           A+          + ++     +   L
Sbjct: 32  RKQSSGKWLCECYPAGREGRRVR-KQFATKGEALAFERFTMEQVDNKPWLGEAIDRRK-L 89

Query: 72  KWLISEYRK-SAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRS 121
             +   +        +    +        + +          +    +  ++++ +   S
Sbjct: 90  SEIAKLWYNLHGQSLTAGERTYKKLCLVIEALCDPPATTFTAKDFAHYRDKRLSGEIYFS 149

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   P +     + +  +F    R  E+   NP  ++ +     + +   T   + 
Sbjct: 150 EKWKNGAEPVTVNLEQSYLSGMFSELARLGEWSQPNPLENMRKFTVAEKEMAWLTHAQII 209

Query: 181 QFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              +  S G     L  E  L +G R  ++       +  +  +    K     +V +  
Sbjct: 210 DLLAACSRGDSDLPLVVEVCLSTGARWREAENLTRSQITPHKITFIRTKGKKNRSVPISK 269

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
              + L     G+                     K + T        H +R   A     
Sbjct: 270 ALYEKLTTRGDGRLFSECYFRFMAAVENTSIQLPKGQLT--------HVLRHTFAAHFMM 321

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326
           +G     L    G   +     Y   A
Sbjct: 322 SGGNILVLQRILGHHDIKMTMRYAHLA 348


>gi|238758491|ref|ZP_04619668.1| Phage integrase [Yersinia aldovae ATCC 35236]
 gi|238703395|gb|EEP95935.1| Phage integrase [Yersinia aldovae ATCC 35236]
          Length = 300

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 23/275 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+   +  Y +      LA N+          I ++ GD     +TTKHI + + +    
Sbjct: 16  TVASWLKRYSEILKRRELAENTMKMRVLQIGYINQQFGDRPIETVTTKHIANFINTYVDN 75

Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             S  A+   + +  +F+ A+    ++ NP  +   P  K +  R       + +++   
Sbjct: 76  GKSSMAVNLRSVLSDVFREAIADGLISTNPVEATRTPSPKVKRERLDYAAFCKIYEAAGQ 135

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPDG 240
           + +  +L+    L +G RC D  +     + N    I   KT              +   
Sbjct: 136 QQNWVQLSLALALTTGQRCDDVRQLKRSDVHNGKLWIVQSKTKMQIAISLSLRLEIMNTT 195

Query: 241 FMKLLAMTPIGKETFFINNDKQKM--------NATQFSIWFKAKATKAGV-----NKSAH 287
             +++       ++ ++ +   K         NA   +  F        +       S H
Sbjct: 196 VGEIIEKCLNNSKSEYLISSSSKSSGRKPGALNADSLTKAFVKALKATDLVYDISPPSFH 255

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +R   A+   +A           G K++     Y
Sbjct: 256 EIR-SLASRLYEAEYGKEFAQKLLGHKSMKMTNVY 289


>gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
 gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo]
          Length = 313

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 45  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 101

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 102 GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 161

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 162 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 220

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 221 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 275

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 276 DIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|161523675|ref|YP_001578687.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189351556|ref|YP_001947184.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
 gi|160341104|gb|ABX14190.1| integrase family protein [Burkholderia multivorans ATCC 17616]
 gi|189335578|dbj|BAG44648.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616]
          Length = 328

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R+G+      +      +            +  ++  +     +++       T   L+ 
Sbjct: 7   RNGRWQVKINRKGFP-TQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLE 65

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAI 134
            YR+S      +  S   +      +  K  ++  R +T   +    + R    T S   
Sbjct: 66  RYRESITPTKRSRRS-EEYR-IGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATNSCVC 123

Query: 135 QFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           + L ++  +   A R+  ++I            P  +   ++P   + +           
Sbjct: 124 RELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLHELHAERHEL 183

Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL 245
           + R      +  L + +R  +      +H+  +     +   K G    V L    + +L
Sbjct: 184 RSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAAIAIL 243

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304
                  E          +        +     +A +     H +R  + T  A      
Sbjct: 244 ESLERIDERVI------PITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKKLPNV 297

Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            EL +  G   V     Y   +       + +R++
Sbjct: 298 IELASVTGHSNVQMLSRYYHTS-----AGELARKL 327


>gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 406

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 89/286 (31%), Gaps = 23/286 (8%)

Query: 67  KPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTK 117
           +  T+  +   +    ++      A  +   +++  +             D + + +  +
Sbjct: 106 ETRTILEVFERHNEQMEALVGQEFAPLTLKRYKTAKEHTASFIKWKYKKDDMEIKDLNFE 165

Query: 118 HIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGI 171
            I       +       +SAI+++++++ +    V  +++  +P    +  + +     +
Sbjct: 166 FITEFNFWLRSARGCNHNSAIKYMSNLKKVVLICVNNKWLKKDPFQGFKLTKKEVVKNPL 225

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                + + +        SQ R  F F  Y+GL   D  +     +   +       T  
Sbjct: 226 SRDELKRLTEKVFEVERISQVRDIFLFCCYTGLAYVDVKQLKTTDIVVGMDGEPWIDTTR 285

Query: 232 IITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
             T       +      ++       +          ++  + + + K  A   G++K+ 
Sbjct: 286 QKTDAPTRIPLLPTALDIIEKYKEHPQCCNKGVVLPVLSNQKMNAYLKEIANLCGISKTL 345

Query: 286 -AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H  R   AT            +    G +++ Q   Y K  D  
Sbjct: 346 TFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKILDVK 391


>gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
 gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC
           43183]
          Length = 406

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T + ++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDKIKIIITKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   M    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPMAASILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     +   + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|298483016|ref|ZP_07001197.1| integrase [Bacteroides sp. D22]
 gi|298270760|gb|EFI12340.1| integrase [Bacteroides sp. D22]
          Length = 404

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 26/284 (9%)

Query: 78  YRKSAHWGSLAV----NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP- 130
           +  S     L       +  ++ S    + R  G  DF + K++++ I         +  
Sbjct: 111 FYFSRKIRELRECGHEGTARAYASSLRSMQRYLGKKDFPFIKLSSRIISDYQGKLLASGI 170

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKS 184
             ++   +L +++ LF+   R+  + +         K +    R      ++        
Sbjct: 171 CDNTIGFYLHNIKALFRKGCREMGLELPCPFRDISIKTEKTLKRSLDPVVIKTLSAIELE 230

Query: 185 FWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             S  S  R  F F  Y+ G+   D      +H+       +  KT  ++ V +     +
Sbjct: 231 KDSPLSLARDIFMFSFYTRGMSFVDIALLKKRHVFPGEICYRRHKTDQLMRVGINKEISR 290

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +L         +               +    +        +   G+      H  R   
Sbjct: 291 ILERYKNVPGEYIFPLFPAERDPYAGYRSAYHRIRYSLGKISRVIGLEFPLRLHAARHSW 350

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           ATI+   GA+ H +    G  +      Y K  D     +    
Sbjct: 351 ATIAKVNGASVHVIGECLGHTSEKTTRIYLKELD--HSALDAVN 392


>gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
 gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A]
          Length = 313

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 45  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 101

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 102 GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 161

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 162 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 220

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 221 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 275

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 276 DIRRVQMWLGHQTLQMTMRYAHLA 299


>gi|225872872|ref|YP_002754329.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225794498|gb|ACO34588.1| phage integrase family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 414

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 118/342 (34%), Gaps = 37/342 (10%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN-SPRKKPTTLKWLISEYRKSAHWGSL 87
           +G  IR      +++  A   A    +        + +++P T+K  + EY   A   +L
Sbjct: 34  NGTYIR-RSLQTASWERAQNLAHEIESADDPKAAPAKKEEPVTIKQAVDEYLADARARNL 92

Query: 88  AVNSRISFESYFD-QIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
           A ++    E+ F  Q +  +   G    R++  + ++S   + +    +  +    +   
Sbjct: 93  AESTLSKLETIFRKQFLAWTKSEGYTLLRELDLRAVQSFRATWRDGGLAKKKKQERLTGF 152

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------G 189
           F + +R  ++  +P L+++R   +      + +E+  +                     G
Sbjct: 153 FWFCIRAGWITQSPTLNLKRITVQQMPTDYFPREEYNEIIDGTYRLDDGLERGYDVEKRG 212

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKL 244
            + R   + L +SGLR  D+     + LQ+N       +         +  ++ +    +
Sbjct: 213 QRIRALVQLLRWSGLRIRDAVTLERERLQSNDDLLLYQAKTGVPVYVPLPHKVAEDLRNV 272

Query: 245 LAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNKS--------AHGVRKFSAT 295
                     FF + +    +A   +   F+     AG+ K          H  R   A 
Sbjct: 273 PPGPKPNPRYFFWSGNGDPKSAVADWQRAFRRLFEVAGLEKPDGGRKRCFPHMFRDTFAV 332

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYT--KGADRIRLGIK 334
               AG    ++    G K+V   E  Y     A + +L   
Sbjct: 333 EMLLAGVPIDQVSILLGHKSVKITEKHYAPFVKARQEQLAAS 374


>gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
 gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC
           43184]
 gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492]
          Length = 454

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ R      G  D    ++T + IR+     K     
Sbjct: 164 METLTGIDYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGL 223

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 224 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 282

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G +             
Sbjct: 283 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISN 342

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 343 IPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 402

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RIS 340
             T           ++    G  +    + Y +  +  ++  + N + R+ 
Sbjct: 403 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLE 453


>gi|330957543|gb|EGH57803.1| phage-related integrase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 454

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 113/384 (29%), Gaps = 42/384 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGST--- 55
            +     +    T  G I + +    +GR+  +          T   A            
Sbjct: 66  KVNDRDGLYVAVTAAGSISFRYNYSINGRQETITFGRYGVGGITLAEARERLGEAKKMVS 125

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108
                  +     +  K   T      ++ +      +A ++R    S ++ ++    G+
Sbjct: 126 AGKSPAKEIARAKARTKGAETFDAWAEKWLRGYQ---MADSTRDMRLSVYESELKPHFGN 182

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++      P++A+     +  +F+WA+ +     NP   V     
Sbjct: 183 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVENPAYLVRPASI 242

Query: 167 KTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R           M Q+       S  R+A + LL + +R S+   A    +  + 
Sbjct: 243 AKFEPRDRALGPDEIAFMYQYLDRIGTASSVRVAAKLLLLTMVRKSELTNATWNEINFSE 302

Query: 222 F-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIW 272
                 ++        L     + L                     +    M+    +  
Sbjct: 303 ALWTIPKERMKRRNSHLVFLSQQALDFFIALKRFAGGSDHVFPSRYDSDLPMSTATINQV 362

Query: 273 F---KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 363 LTLTYRLAQKEGKPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 422

Query: 326 -ADRIRLGIKNSRRISSVVDSDDP 348
             D+ R  +++   +        P
Sbjct: 423 YRDQRRAMLQDWADMIDEWTLKRP 446


>gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer]
          Length = 284

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 77/286 (26%), Gaps = 52/286 (18%)

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRV 142
           +   ++ +  ++  +    IR  G      + +  + + +    +    S      ++  
Sbjct: 1   YLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAA 60

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
           L  +  +     +     + RP+         T +++ +         + RL  + L  +
Sbjct: 61  LLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEHRLFAQLLYGT 118

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------------------TIITVE---- 236
           G+R S+  +  V+ L  +  +I  ++                                  
Sbjct: 119 GMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQ 178

Query: 237 ---------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                                    +  + A      +       +  M    F   FK 
Sbjct: 179 AEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKR 238

Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +AG+ K  + H +R   AT    +G     +    G   V   
Sbjct: 239 AVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284


>gi|159904807|ref|YP_001548469.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886300|gb|ABX01237.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 328

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/302 (9%), Positives = 86/302 (28%), Gaps = 36/302 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVE----SR 126
            IS +R+   +  +  N+ I   +     +  +    + +  ++               R
Sbjct: 26  WISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKER 85

Query: 127 KHTPSSAIQFLTSMRVLFK---------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           K + ++  ++   ++V ++         +              +E         +     
Sbjct: 86  KISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLV 145

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITV 235
             + F++  S   +  +    L  +G R S+      +        F ++  K+     V
Sbjct: 146 IAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKV 205

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN----------ATQFSIWFKAKATKAGVNKS 285
              +  ++LL             +   +              Q +  F     K    + 
Sbjct: 206 VCSNDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEK 265

Query: 286 A--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                    H +R   A    + G     +    G ++++    Y+    R    +++ +
Sbjct: 266 IQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQDIK 325

Query: 338 RI 339
           ++
Sbjct: 326 KL 327


>gi|104774036|ref|YP_619016.1| integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423117|emb|CAI97856.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 305

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 94/289 (32%), Gaps = 26/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           RKK   L    +++ +    G++   +   +     +  +I       D  ++  + I +
Sbjct: 2   RKKQILLHDYFAQWIEVYKEGAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                    ++ + F   ++ +   A  + Y+  +P   +  +  +   +  +   + ++
Sbjct: 62  TFAKTHEK-ATVMDFHHQLKAMLLDAYDEGYIHKDPTRKIVVKGKEPSEKKAKYLNEFEL 120

Query: 180 QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
           +         + P   +  LL   +GLR S++     + +     +I   KT        
Sbjct: 121 KLLLRHLDLSTFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTG 180

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    ++  V +       L               ++++  +  + + K    +  
Sbjct: 181 SFKQTKNVSSVRKVPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNFLKKHCEELN 240

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +   S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 241 IPVISVHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar
           morrisoni]
          Length = 306

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 84/282 (29%), Gaps = 28/282 (9%)

Query: 74  LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSG 122
           LIS++  S      L   +   + S     +    +              ++T + I   
Sbjct: 14  LISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARY 73

Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               + T    PS+  + + S++  F WA ++  V  N   S++    +    +  + ++
Sbjct: 74  RGHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKE 133

Query: 179 MQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTI 232
                    +    + R    F+L++GLR  + C   ++ +          +++ K    
Sbjct: 134 EAALMHAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQ 193

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGVN-KSA 286
             V L       L       E                         +     A +   SA
Sbjct: 194 REVPLNSTARCALEEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSA 253

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           H +R     + A+     H L    G   ++    Y +    
Sbjct: 254 HDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRATQE 294


>gi|54293140|ref|YP_125555.1| hypothetical protein lpl0179 [Legionella pneumophila str. Lens]
 gi|53752972|emb|CAH14408.1| hypothetical protein lpl0179 [Legionella pneumophila str. Lens]
          Length = 401

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 85/284 (29%), Gaps = 28/284 (9%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T   L+ +Y   A   +L  ++   +    +  +    G    R+++   IR+ +   
Sbjct: 92  KATTAELLKDYMAIAE-RTLEASTYNGYRKVCEAHLYPAFGKIPIRELSPVIIRNWITGL 150

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184
             T  +    LT +R +   A+    +  NP   +   +   K      W  +   Q + 
Sbjct: 151 NVTVKTVRNILTPLRNMLDQAMNDGIIERNPLDRLVLSKLLNKKTSKSDWEVDPFDQDEI 210

Query: 185 FWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQKT 229
                    Q R  F+F  +SGLR S+        +     +++            T+  
Sbjct: 211 KAILDAATGQARNLFQFAFFSGLRTSELIALEWNDIDWLKGTVRVSKAVVLKQEKGTKTK 270

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGV 282
             +  V L    +  L                     + +          +     KAGV
Sbjct: 271 SGVRDVLLLPPAVDALKNQKAFTYLEGSRVFYNPRTNSPWETDGQIRKTCWTHLLKKAGV 330

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324
                +  R   A++   AG     L    G +  +   + Y +
Sbjct: 331 RYRNPYQTRHTYASMLLSAGENPLWLATQMGHRDTEMIIKHYGR 374


>gi|307287810|ref|ZP_07567848.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501198|gb|EFM70503.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 378

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 104/370 (28%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    +K  +L+
Sbjct: 8   NGKYKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKDQKKVSLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 67  NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 126 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEREVYQLLN 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 186 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 366 KTNLVEALNK 375


>gi|294340774|emb|CAZ89169.1| putative Site-specific recombinase, phage integrase family
           [Thiomonas sp. 3As]
          Length = 348

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 88/344 (25%), Gaps = 34/344 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPRKKPTTLKWLI 75
           R        R+     I             +   +     +    +       TTL  + 
Sbjct: 7   RKNGWRAQIRRKGMPSIS-RTFDLLADAQVWAREVERELQRGNAAVLRDDAGKTTLAQVA 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132
             Y  +        +S  ++         + G      I    + +  +       +  S
Sbjct: 66  ERYAVTV-LPGKRAHSGKTY---LQAAASRFGPLFLSAIRAVDVAAWRDELLAEGLSAQS 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            I  L ++  LF +A ++  + +    P   + +P +     R  T  ++          
Sbjct: 122 VIHHLNALSGLFSFAEKELSITLPVGNPVRGIRKPAKPRGRDRRLTAGELDYLLRAARAA 181

Query: 190 SQPR--------LAFEFLL----YSGLRCSD-SCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                       LA E  +      GL  S         HL +           +   V 
Sbjct: 182 RARIGGLPQVITLAVESSMRLGELLGLEWSRVDLARRTAHLVDTKNGESRTVALSSAAVA 241

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHG 288
                   +     G                     ++A  T  GV        +   H 
Sbjct: 242 ALQSLPLRIDGRVFGWAASDSFEKTWTRCKASARKLYEADCTAQGVKPDPAFLADLRFHD 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R  + +   + G    E+ +  G K++   + YT   +  +L 
Sbjct: 302 LRHEATSRLFEKGLGVMEVASMTGHKSLSMLKRYTH-IEAEKLA 344


>gi|254497370|ref|ZP_05110173.1| phage related integrase [Legionella drancourtii LLAP12]
 gi|254353423|gb|EET12155.1| phage related integrase [Legionella drancourtii LLAP12]
          Length = 413

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 100/347 (28%), Gaps = 34/347 (9%)

Query: 14  ERTRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSP 64
             T  G   +   K  G   RRI L      T   A   A      +             
Sbjct: 35  RVTAAGTKSFVVEKNIGNKIRRITLGKYGALTAEKARKEAQKVIGQIATGIDPIAEKQGM 94

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL  + ++Y+++    SL  N+  ++E   +       +  +  IT   +    E
Sbjct: 95  KINNMTLNDVFNDYKRAR--KSLKHNTLYNYERVLNVAFAGWSNKSFLSITKDKVAKHHE 152

Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   + A   +  +R LF +A  Q   A    L +E P ++    R W + + +Q 
Sbjct: 153 KLGKESGEAYANLAMRLLRALFNFAAGQYEDAQGRSLVIENPVKRLSQTRAWYRVERRQT 212

Query: 183 KSFWSE------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                E                R     ++ +GLR  ++       +     ++    T 
Sbjct: 213 FIKAHELAPWYAGVQQLENETLRDYLLLIILTGLRRQEAATLRWDQVDLKAKTLTVLDTK 272

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVNKS 285
                         L      +     N                          +G++ +
Sbjct: 273 N--HESHTLPLSNYLYELLSSRSQKRSNEYVFPGTGAAGHIIEPRKQMANVTKFSGIHFT 330

Query: 286 AHGVRKFSATISADAGATAHELMATYGWK-TVDQAETYTKGADRIRL 331
            H +R+   TI+     +A+ L      K + D    Y    D  RL
Sbjct: 331 VHDLRRTFITIAEGLDISAYALKRLMNHKMSGDITAGYI-VTDVERL 376


>gi|191173097|ref|ZP_03034630.1| prophage lambda integrase [Escherichia coli F11]
 gi|190906642|gb|EDV66248.1| prophage lambda integrase [Escherichia coli F11]
 gi|324013230|gb|EGB82449.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 380

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 100/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGIQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQK 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30]
 gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30]
          Length = 182

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299
            +L+       E  F+N+    + AT           K+ ++     H +R   AT   +
Sbjct: 81  KQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHMLRHTFATHLLN 140

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
            GA    +    G   +   + Y   
Sbjct: 141 NGADMRTVQELLGHANLSTTQIYAHV 166


>gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
 gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271]
          Length = 411

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 82/277 (29%), Gaps = 20/277 (7%)

Query: 87  LAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH----TPSSAIQF 136
            + ++   +E+ +  +           D  ++++T   I       +     T ++   +
Sbjct: 133 RSYSTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVNKSLTHNTIWVY 192

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RL 194
           +  +  + + A+ +  +  NP  +      + +      +E     +      S    R 
Sbjct: 193 MMPLCKMVEIAIDKGIIYRNPFKNYISSMEEKDRGYLLREEVETLLQYHPKSASAELVRD 252

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F F  ++G    D  +    HLQ+     K        +    +  +  +A   I K  
Sbjct: 253 LFVFSCFTGFSYIDIKQLKRSHLQSFFDGNKWLIKRRQKSDVPCNVRLLDIAEKIIEKYE 312

Query: 255 FFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELM 308
                +      +  +     K       +      S H  R    T+    G     + 
Sbjct: 313 GTTRTEALFPTPSNANCNLLIKKMMKDCNIIREKPISFHWARHTFGTLFLTEGVPLESVS 372

Query: 309 ATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G K +   + Y K  +    +     + R+ ++ 
Sbjct: 373 KMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC
           BAA-613]
          Length = 392

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/377 (10%), Positives = 94/377 (24%), Gaps = 67/377 (17%)

Query: 9   PFVTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           P+  ++R+      Y  R        G      +                       +  
Sbjct: 10  PYTIRQRSDG---RYEVRLYTGTDSNGKKTYKSIYGRTSKELKEKL-----KEIATEQKK 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
           N         +     + +   +  L   S    E  ++++    G      I+T  I+ 
Sbjct: 62  NRTPAANINFRDYALHWMRLYKYPVLKPVSYDRLEQTYNKVCEYLGWIQMGNISTDDIQE 121

Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +     T   S+  +    ++ +F  A +   +  NPC +V  P  +   ++    E +
Sbjct: 122 MINDLARTKAYSTVKKHHEFVKNVFSHAYKTGELDFNPCEAVALPIERNMTVKTKPAEIL 181

Query: 180 QQFKSFWSEGSQPRL------------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            + ++        ++            A   +L +G R  +        +     + +  
Sbjct: 182 LEEETEAMYAFNEKIKKSRNQFFKQMPALLLMLNTGWRVGELLALEWTDIDFKKRTARIN 241

Query: 228 KTGT----------------------------IITVELPDGFMKLLAMTPIGKETFFINN 259
           KT                                   L D  + LL       +   I +
Sbjct: 242 KTLAKAKTRNDAGESISRHKTTFPEPTKTKAGERLTPLNDMAVSLLKQIKEYNQRMGIQS 301

Query: 260 DKQKMNATQFSIWFKAKATK---------AGVNKSAHGVRKFSATISADAGATAHELMAT 310
           +          +  +              A  + + H +R   A+     G     +   
Sbjct: 302 NYVVCTKDGGYVSERNLLRTFKSVMGIIGAEKDYTIHSLRHTYASRLLKRGVDVSVVSKL 361

Query: 311 YGWKTVDQA-ETYTKGA 326
            G   ++     Y    
Sbjct: 362 LGHSDINTTYGKYIHVL 378


>gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970]
 gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970]
          Length = 342

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 79/318 (24%), Gaps = 36/318 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             GRR+R  +  +   +      +     K    ++P +   TL  +   +    H  SL
Sbjct: 20  RTGRRVRKMFATKGEALAFERYTMDQVNNKPWLGDAPDR--RTLSEIAELWYN-LHGRSL 76

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAI 134
                  ++   + I+   G+     ++ K        R                P +  
Sbjct: 77  EAG-EKIYKK-LELIVAALGNPPAHSLSGKDFAHYRSKRLSGEIYFSEKWKKGAKPVTVN 134

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
              + +  +F    R     +   L   R     E    W   +  +         +  L
Sbjct: 135 LEQSFLSGMFSELARLGEWNLPNPLDNLRKYAVAEKEMAWLTHEQIKTLLAACSLGRADL 194

Query: 195 AFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                  L +G R +++ +     +  N  +    K     +V +       L      +
Sbjct: 195 PMVVKVCLSTGARWNEAEKLTRSQVSPNKITFIRTKGKKNRSVPISKELHDELVALEGDR 254

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELM 308
                               F A      +        H +R   A     +G     L 
Sbjct: 255 LFSECYF------------RFMAAINTTDIKLPTGQLTHVLRHTFAAHFMMSGGNILVLQ 302

Query: 309 ATYGWKTVDQAETYTKGA 326
              G   +     Y   A
Sbjct: 303 RILGHSDIQMTMRYAHFA 320


>gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 88/276 (31%), Gaps = 28/276 (10%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +  +R  G     Y  +  +++R       ++  T ++   ++  +R ++
Sbjct: 24  STAKSYQDALNSFMRFCGLEVIPYIYVNKENLRRYQAFLLNKGCTWNTVSTYMRRIRCVY 83

Query: 145 KWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             AV +      P L          KRK    +   +  M             +      
Sbjct: 84  NMAVEEGLAPYIPYLFKGVFTGIESKRKKALPQDLLRSLMTAPLDDPELRKTRQALCLMF 143

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--------------LL 245
            + G+   D      ++++  +   K QKTGT + +E+     +               L
Sbjct: 144 QFCGMAFVDFAHLKKENVRGGVLEYKRQKTGTPMLIEVQSTAWESLRELSSDVGKDSPYL 203

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGAT 303
                G +       +       F+   K  A   G  +  +++ +R   A I  +    
Sbjct: 204 FPFLKGIKVGKEAYKEYTSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVP 263

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              +    G K++   + Y K     ++      +I
Sbjct: 264 IEMISELLGHKSIKTTQIYLKSFSLEKM--SAVNKI 297


>gi|196251081|ref|ZP_03149762.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|196209453|gb|EDY04231.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 377

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 97/359 (27%), Gaps = 40/359 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T+ G   Y        + +               A      +                 
Sbjct: 6   KTKSG-WRYRVSYKENGKYKTKTKGGFRTKKEAELAAAELEKQLHKGYDINAADQLFPEY 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132
           +  + +    G  +     + E     +         +++T    +  +     T ++  
Sbjct: 65  MRNWFELYKKGKHSPEHDKNVEYSVQLVEEYFPGVKMKELTRDMYQKFINEIAETRTTET 124

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +  T ++   K A+ +  +  +P   V    +K          + Q+ K   +E  + 
Sbjct: 125 VKKRHTYIKECIKAAIEEGVIIRDPTYKVVVKGKKKGKDEELKYLNYQEAKQLIAEIKKD 184

Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------- 230
                  R    F L +G R S+        +      +   KT                
Sbjct: 185 MRPKYISRYIILFALATGARFSEILGLTWDCIDFKNRMVTINKTWDYKFTNDFADTKTYS 244

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFI-------------NNDKQKMNATQFSIWFKAKA 277
           +  T+++ +   K+L      +    +             N   + ++    +   K   
Sbjct: 245 SKRTIKIDEDTCKILKELRKAQNEVAMKTGLRNEKNLVFVNTKMELVSNNAVNKTLKTLC 304

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334
            K G+   + H +R   A++     A    +    G K +    +TY+   D +     
Sbjct: 305 RKLGLKEVTMHSLRHTHASMLLYRKANIKYISKRLGHKDIGITLQTYSHILDELEQAEN 363


>gi|322375625|ref|ZP_08050137.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
 gi|321279333|gb|EFX56374.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus sp. C300]
          Length = 388

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 115/387 (29%), Gaps = 54/387 (13%)

Query: 11  VTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+   + G  +Y            G++++       T       A+       +  ++ 
Sbjct: 3   ITQHTKKDGSAVYRSSIYLGIDSVTGKKVKT-TISARTKKELKSKAIQAKVEFEKNGSTV 61

Query: 65  RKKPT--TLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRS 121
            K     T + L   + ++    ++  ++++ +  +    ++   G++   +IT   I+ 
Sbjct: 62  TKAVIVTTYQELTELWLENY-CHTVKHSTQVGTKTNIRKYLLPAFGEYKLDRITPAIIQH 120

Query: 122 G-------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                               Q     + +  +AV  + ++ NP   V  P+ K +  +  
Sbjct: 121 QVNQWAKDYNQLGKGYQQYNQLHALNKRIMSYAVSLQVISTNPASDVIVPRCKPKEEKKL 180

Query: 175 TKED---------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---F 222
              D                  +     + ++ LL +GLR  +        +        
Sbjct: 181 KYLDDENLKKFLTYLDQLPNTYKNFYDTVLYKTLLATGLRIRECLALEWSDIDLQDGTLE 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTP---------------------IGKETFFINNDK 261
             KT      IT       ++++ +                       +  E  F N   
Sbjct: 241 VTKTLTMTKEITSPKTKSSLRVIDLDNKTVLMLRLYKTRQAQLGREIGMTFEKVFPNTFD 300

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +   A       +     AG    S H  R   A+I  +AG    E+    G   +    
Sbjct: 301 EYREAGGLRFRLEKHLQGAGCPSVSFHAFRHTHASILLNAGVGYKEIQTRLGHSKISITM 360

Query: 321 -TYTKGA-DRIRLGIKNSRRISSVVDS 345
            TY+  + D  +  +    ++   + S
Sbjct: 361 DTYSHLSKDSKKRTVSIFEKVLENLKS 387


>gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451]
 gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451]
          Length = 320

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 53/300 (17%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
           +       A  +  ++  +  + I          +  K +   +       + A +  + 
Sbjct: 11  EHMQTRFYAKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  L         + ++  +  +R + + +     T++++++         + +L  + 
Sbjct: 71  ALNSLSFLYKEILKMPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDV--VDPKYQLPAKL 128

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------------------------ 228
           L  SGLR  +  R  +Q +  +  +I+  +                              
Sbjct: 129 LYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY 188

Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                         +  L     +  +       +  MN T   
Sbjct: 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ 248

Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              +  A +AG+ K+   H +R   AT   + GA    +    G   V   + Y    DR
Sbjct: 249 RTVRKSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHVLDR 308


>gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        K     AG+    S H +R   AT   +AG+    +    G   V   
Sbjct: 97  HHIHENGLQKQVKKAVEAAGISKKVSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|269202441|ref|YP_003281710.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus ED98]
 gi|262074731|gb|ACY10704.1| pathogenicity island protein, integrase [Staphylococcus aureus
           subsp. aureus ED98]
          Length = 406

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDNTP 64

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 65  TTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 124

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ER 163
             +            +  L+  + +F++  R   +     L                 +R
Sbjct: 125 VFDELDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 184

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
            K           +D+         G   R      L  EF   +G+R  +      + +
Sbjct: 185 NKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIKNEVI 244

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 245 DFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 304

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G+ K  S+H +R    ++ +  G 
Sbjct: 305 WNDGYLNRNFVFTNHKGNPMQTERFNKILRKSAKDVGIEKEISSHILRHSHISLLSQQGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 365 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|255975295|ref|ZP_05425881.1| integrase [Enterococcus faecalis T2]
 gi|255968167|gb|EET98789.1| integrase [Enterococcus faecalis T2]
          Length = 388

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 102/368 (27%), Gaps = 52/368 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +R    V K+  R     +YF         G+RI+       T   A   A+        
Sbjct: 7   MRRIANVYKDEKRG---TWYFSLTLGYDRFGKRIQPTRRGFKTQKEAK-DAMEELKKNYS 62

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +  T +    +Y    +       + +  +    + +   G     KI   HI
Sbjct: 63  DSQEIYLQGITFREFYKKYFFPWYKLGTIEKTYVKTDKTLKRALAYFGKMQMEKIRPIHI 122

Query: 120 RSGVESR-----------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPK 165
           +   +             K  P S          +R++FK A+  E +  NP  ++ + +
Sbjct: 123 QEFQQFLVQECFVTNKEGKIRPLSNNYIKQIFNKLRIIFKRAMVLEVIDENPVDTIGKIR 182

Query: 166 RKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            +   +  WT ++             + +  +    FL  +GLR  +        +  + 
Sbjct: 183 TQRSVVAFWTVDEFKKVYNCSYRCDFQEAFYKRMMRFLFVTGLRSEELFALQWPDIDFHK 242

Query: 222 FSIKTQKTGTIITVELPD-----------------------GFMKLLAMTPIGKETFFIN 258
            +    K+  I T    D                          K    T      F   
Sbjct: 243 GTCCVNKSLYIRTRTDYDFSDTKNASSIRTITLDKQTIVDLREWKETQKTIGDDLGFIFT 302

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            D    +   F    K  A  AGV     HG+R        +     + +    G  +V 
Sbjct: 303 FDGLPPSPKTFLGRVKKLAEIAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVK 362

Query: 318 QA-ETYTK 324
              + Y  
Sbjct: 363 TTLDKYGH 370


>gi|16760822|ref|NP_456439.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|25301774|pir||AC0740 probable integrase STY2077 [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503119|emb|CAD05622.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 358

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 103/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPKNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGV 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|15800830|ref|NP_286846.1| putative integrase for cryptic prophage CP-933M [Escherichia coli
           O157:H7 EDL933]
 gi|15830309|ref|NP_309082.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189404497|ref|ZP_03007478.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189404969|ref|ZP_02812411.2| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|193066773|ref|ZP_03047793.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|194430215|ref|ZP_03062714.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|217326229|ref|ZP_03442313.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218694447|ref|YP_002402114.1| putative integrase from prophage [Escherichia coli 55989]
 gi|260844435|ref|YP_003222213.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|260844509|ref|YP_003222287.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|260854263|ref|YP_003228154.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|261256103|ref|ZP_05948636.1| integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|12514159|gb|AAG55457.1|AE005287_4 putative integrase for cryptic prophage CP-933M [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360515|dbj|BAB34478.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189365242|gb|EDU83658.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372689|gb|EDU91105.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC869]
 gi|192925584|gb|EDV80258.1| site-specific recombinase, phage integrase family [Escherichia coli
           E22]
 gi|194411751|gb|EDX28074.1| site-specific recombinase, phage integrase family [Escherichia coli
           B171]
 gi|217322450|gb|EEC30874.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351179|emb|CAU96883.1| putative integrase from prophage [Escherichia coli 55989]
 gi|257752912|dbj|BAI24414.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257759582|dbj|BAI31079.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257759656|dbj|BAI31153.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 339

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 97/340 (28%), Gaps = 34/340 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            P       V   R R      Y  K  G    +               +       E  
Sbjct: 3   RPRKNKKDNVLPPRVRS-NGYSYVWKPEGSTRSIGLGRVRKTS------VAKVWQNYELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V    + +   R     D Q
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFSLKARTVYITDEQ 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               +     Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 173 YAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +                   K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                     G +       +     G KT +Q   Y + 
Sbjct: 292 -------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 335

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 87/299 (29%), Gaps = 37/299 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVE 124
             + +Y         + +S  ++   F  + + +              ++    I + ++
Sbjct: 10  QFMQDYL--PRQRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLD 67

Query: 125 S----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKE 177
                R +  +S    L +++   ++   Q    +     +     K    +     +K+
Sbjct: 68  HLETDRGNGATSRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKD 127

Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGT 231
           ++Q   +        G++ R         GLR S+   A      L      +   K   
Sbjct: 128 EVQAVLNAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRK 187

Query: 232 IITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKA------ 280
                L       L               F+N + + M  + F         KA      
Sbjct: 188 HRHFPLWKQTASDLRAWLAVRGLTPAPEIFVNAEGRAMTRSGFEYVLDKHVVKASQHCPS 247

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
             G + S H +R   A I  +A     ++    G   +   ETY +  A +    ++  
Sbjct: 248 LAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAV 306


>gi|119714827|ref|YP_921792.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119535488|gb|ABL80105.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 361

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 112/354 (31%), Gaps = 36/354 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++  +GK    +R   G+     +    T    ++   T    + ++I+ PR    T   
Sbjct: 5   KKRDNGKWRARYRDEGGKEH-ARHFARKTDAQDWLDEETAGLVRGDWID-PRHGKITFAQ 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
             +++     W   A  +  + E     +    G+   RKI   H+ + V+S   T   S
Sbjct: 63  WFADWSARQVW---ADGTLEAAEQAAASV--TFGNIAMRKILRSHVEAWVKSMSTTLAAS 117

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGS 190
           +       + + F+ AVR + +   P   V  PK     +       +           S
Sbjct: 118 TTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLIPTPEQVAAARVSCPDS 177

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------------IIT 234
                     Y+GLR  ++    V  +      I+ ++                     T
Sbjct: 178 AFVGFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRRQVQGQTVATAKVVPPKAGSART 237

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVN-KSAHGV 289
           V + D  +KLL+       T+        M    N       ++      G++  + H +
Sbjct: 238 VYVDDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHLWRQTRQGVGLDAFTLHDL 297

Query: 290 RKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GADRIRLGIKNSRR 338
           R F A+    AG     +    G  +      TY+       DR R    +  R
Sbjct: 298 RHFYASGLIAAGCDVVTVQHALGHSSPTITLNTYSHLWPKAEDRTRDAAASLWR 351


>gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 360

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 118/347 (34%), Gaps = 30/347 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKRE 59
            R  P++ ++  R  +       G   R+ L           Y  A     L        
Sbjct: 16  KRRKPWLLRDNKRFNE-----ETGKFERLALGVFETKKEAEIYRIAYFTNNLDMLKKTDI 70

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
            I+  ++K  T + +   + K          +  ++E+ F +  +K    + ++I    +
Sbjct: 71  KIHKKKEKSITFEQVYKLWLKDKDVNK---GTLSNYETQFKR-SKKLHKMEMKEINGILL 126

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-----EGIRPW 174
           +    S   T S+     +   ++F +A+  +  + N    ++    +      +  R  
Sbjct: 127 QDIFYSLDLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGNKTSDRERVI 186

Query: 175 TKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           T+E++Q      S     +         L Y+GLR S+  R   + +  N +  + +K+ 
Sbjct: 187 TQEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSK 246

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVN-KS 285
           +   +       K++ +      +      ++    + +   F   F+      G++  S
Sbjct: 247 SKAGIRKVPIADKIVDLFRARYFSKDTFLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
            H  R   A++ ++  A    ++   G        + Y    +  RL
Sbjct: 307 LHDTRHTFASLLSNNVADKDAIIKIIGHSNYKTTSDVYIHK-EIKRL 352


>gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B]
 gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B]
          Length = 336

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 86/326 (26%), Gaps = 59/326 (18%)

Query: 66  KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRS 121
               +L   +  + +   +  SL+ ++  ++ +    ++      G  +   +T   +RS
Sbjct: 2   ATTPSLGTAVELFARHLQYERSLSSHTVRAYLTDLRDLVDHAERLGCREPADLTVAVLRS 61

Query: 122 GVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            +          ++  +   + RV   +  ++ +++ +P   +  PK         T+  
Sbjct: 62  YLAKLDTVGRARTTIARRAAAARVFTAYCSKKGWMSHDPGRRLGTPKVVRPLPDVLTQAQ 121

Query: 179 MQQFKSFWS---------------------------------------EGSQPRLAFEFL 199
            +                                                 + R   E L
Sbjct: 122 ARAVLERAEQRAGPDAEADAGAIGVPEDAREDAGAANAAQDVDTISLARRLRDRAILEVL 181

Query: 200 LYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             +G+R  +        +           K     TV +    ++ +          F  
Sbjct: 182 YATGIRVGELVALETDDIAWVRAVIHVIGKGNKERTVPIGQPALRAVEQWLRHGRPAFQT 241

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHE 306
                        ++++  +      A             HG+R  +AT   + GA    
Sbjct: 242 GASGSAIFLGVRGRRIDPREVRRVVYAATRDLPDAPRLGPHGLRHSAATHLLEGGADLRS 301

Query: 307 LMATYGWKTVDQAETYTKGADRIRLG 332
           +    G  T+   + YT  +      
Sbjct: 302 VQEILGHATLATTQLYTHVSIERLRA 327


>gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602]
 gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602]
          Length = 351

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 94/330 (28%), Gaps = 30/330 (9%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            + + G  I         GRR+R           A+          + ++   +    TL
Sbjct: 4   RKLKTGSWICECYPAGRCGRRVR-KQFATKGEALAFERHTMDEAVNKPWLG-EKTDRRTL 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           + +   +    H  +L   S  +++     ++   G+      T K      + R +   
Sbjct: 62  EDIAKLWYN-LHGQALTAGS-KTYKKIC-LMVEALGNPPATTFTAKDFAHYRDKRLNGEI 118

Query: 130 -----------PSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE 177
                      P++     +    +F   +R  E+   NP  ++ +       +   T E
Sbjct: 119 YFSERWRQGADPTTVNLEQSHFSGMFSELIRLGEWKQPNPLETLRKFATSENEMSWLTHE 178

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +       S+G     L  +  L +G R  ++       +  +  +    K+    +V 
Sbjct: 179 QINILLEACSKGRPDLPLVVKICLSTGSRWREAETLMRSQVTPHKITFVRTKSKKNRSVP 238

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
           +     + +   P  +              +   +  + + T        H +R   A  
Sbjct: 239 ISKELYEEIIAQPGDRFFSECYFRFMAAIDSTDIVLPRGQLT--------HVLRHTFAAH 290

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G     L    G   +     Y   A
Sbjct: 291 FMMSGGNILVLQRILGHSDIQMTMRYAHFA 320


>gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 9/216 (4%)

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             ++      +K +  +       +   F W   ++Y+  +P   + + K  T     ++
Sbjct: 18  RCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYS 77

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
            E ++  +   +E  +     + L  +G+R  +      + +  N               
Sbjct: 78  DEALELMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKGDKERI 136

Query: 235 VELPDGFMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
           V         L      ++           +   +MN     +  +    + G+NK   H
Sbjct: 137 VYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRLRQLGKRLGLNKVHPH 196

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             R+  AT++ D G    +L    G + +D    Y 
Sbjct: 197 KFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 232


>gi|63146891|emb|CAI79475.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 87/289 (30%), Gaps = 26/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           R+K   L    +++ +    G++   +   +     +  +I       D  ++  + I +
Sbjct: 2   RRKQILLHDYFAQWIEVYKDGAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKE 177
                    ++ + F   ++ +   A  + Y+  +P   +    + P  K        + 
Sbjct: 62  TFAQTHEK-ATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKAKYLNEFEL 120

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
            +       S           +  +GLR S++     + +      I   KT        
Sbjct: 121 KLLLRHLDLSAFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTG 180

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    ++  V +       L+              ++++  +  +   K    +  
Sbjct: 181 SFKPTKNSSSVRKVPIDWKLAMQLSQVIQDLPNGESIFAQKRVFNSTVNNLLKKHCKELN 240

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +   S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 241 IPVISVHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQE 289


>gi|30019100|ref|NP_830731.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
 gi|29894643|gb|AAP07932.1| DNA integration/recombination/invertion protein [Bacillus cereus
           ATCC 14579]
          Length = 282

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 85/277 (30%), Gaps = 37/277 (13%)

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +II   G+    K+T+ H+++ V S +       +  + +  +R   + A+  E +  N 
Sbjct: 9   RIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAIDLELITKNV 68

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
              ++  K   E +  W ++++Q F       S+  + F   L +G+R  +      + +
Sbjct: 69  AAKIKLSKADKEELTVWNEQEVQLFLKAAQ-DSRYYIVFHMALVTGMRQGELLGLRWKDV 127

Query: 218 QNNIFSIKTQKTGTI---------------ITVELPDGFMKLLAMT-------------- 248
                 +   +T +                  + LP   +  L                 
Sbjct: 128 DLEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVLKEKLSQGEE 187

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
               +          +N         A    A V K   H +    AT+    G     +
Sbjct: 188 YHDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPKIRFHDLHHTHATLLMAKGVDVKVI 247

Query: 308 MATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343
               G   +    +TY+       +      +I  ++
Sbjct: 248 SERLGHSNIKITLDTYSHVLPT--IQEDAVNKIEEIL 282


>gi|323484551|ref|ZP_08089916.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402129|gb|EGA94462.1| site-specific DNA tyrosine recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 280

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 78/255 (30%), Gaps = 11/255 (4%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
           +++ +       + ++   ++    + ++       +++T   +    +S   ++  +S 
Sbjct: 12  NQFIRYLIQEEKSSHTVEKYQRDLKKFVQFLRG---QEVTKDLVIEYKKSLSDRYAATSV 68

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L S+    ++A       +       +     E      +       +   +  +  
Sbjct: 69  NSMLASLNHFMQFAG-WLEFKVKQIKLQRQVYCPEEKELTKEEYYRLVNTAKLMKKDRIG 127

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF--MKLLAMTPIG 251
           L  + +  +G+R S+     V  +   +     +     I +        MK +    I 
Sbjct: 128 LIIQTICSTGIRISELIYITVDSVHTGVAYATCKGKSRQIFLPHKLRMLLMKYIRQNQIR 187

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELM 308
           +   F+  + + +N +      KA    A V       H +R   A           +L 
Sbjct: 188 QGPVFLTREGKPVNRSNVWKEMKALCASARVLAVKVFPHNLRHLFARTYYRMEKDISKLA 247

Query: 309 ATYGWKTVDQAETYT 323
              G  +++    Y 
Sbjct: 248 DLLGHSSINTTRIYI 262


>gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19]
 gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19]
          Length = 412

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ +      G  D    ++T + IR+     K     
Sbjct: 122 METLAGIDYSPVTINRYKNVVKKLQQLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGL 181

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 182 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 240

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G +             
Sbjct: 241 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISN 300

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 301 IPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 360

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RIS 340
             T           ++    G  +    + Y +  +  ++  + N + R+ 
Sbjct: 361 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLE 411


>gi|292669749|ref|ZP_06603175.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648546|gb|EFF66518.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 344

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 97/334 (29%), Gaps = 43/334 (12%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS--- 94
                 +   M  +    P  +   + + +    K    +Y       ++A  +      
Sbjct: 6   TMTKEQLQEAMKEVLQGLPAIQTQPAMKGESIAFKEYGDKYMND-KSRTVAKTTHSKSAC 64

Query: 95  -FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQ 150
            +       +   G+     IT   ++  V +    P    +       +  +   A   
Sbjct: 65  LYRVQL---LPAFGEQPLAAITRSQVQGFVNAMADHPYSMETIKATKCLLSSIMALAASD 121

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
           + + +NPC +V+ PK +    R  + E+ ++     SEG +  +A   L  +GLR  +  
Sbjct: 122 QLIPVNPCKAVKLPKVEPNKKRAPSMEEFKR-LMKASEGHRLWIAIPLLFLAGLRLGEML 180

Query: 211 RAGVQHLQNNIFSIKTQKTGT-------------------IITVELPDGFMKLLAMTPIG 251
               + +      I   KT +                     ++ + D    +L      
Sbjct: 181 ALTWEDIDMKERLIHVSKTWSVENGSGKAYLKDSPKTKAGRRSIPIGDDLYTMLKRYRTN 240

Query: 252 KETFFINNDKQKM-----NATQFS-IWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
           +         ++      +   F    FK     A + K  + H  R + A     AG  
Sbjct: 241 EGKGKNVVIPKRDADEYTHPQVFRGKVFKYWCYDADLPKDITPHSGRHYFAYHLYAAGVN 300

Query: 304 AHELMATYGWKTVDQ-AETYTKGADRIRLGIKNS 336
              L    G   +    + Y       +L  +  
Sbjct: 301 PETLRHITGHSDITTLLDVYCHT---DKLSDETM 331


>gi|158317149|ref|YP_001509657.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158112554|gb|ABW14751.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 402

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 99/385 (25%), Gaps = 67/385 (17%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y     G   R P   +S  I      LT      +          T++  ++ +     
Sbjct: 25  YVLMPDGTTKRRPVYGKSEEI--VRGKLTELQANSDQGIPADATGWTVERYLTAWLAQTV 82

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES----------------- 125
             +   N+ +++E      ++   G     ++T   +R  +                   
Sbjct: 83  KPNRQPNTYVTYEKAVRIYLVPGLGKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARP 142

Query: 126 --------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                   R  +          +R   + AVR+E +  N    V+    +    R  T E
Sbjct: 143 EGERRCCDRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVE 202

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---- 233
              Q       G +        L+ G+R  +        + +   ++  + T   +    
Sbjct: 203 QAHQLLDAA-AGGRLYALLVLALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGEL 261

Query: 234 --------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                                       +L D          +     F       +   
Sbjct: 262 RLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERDAAGDAWVQTGHVFTTKIGTPIEPD 321

Query: 268 QFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
               ++       G++    HG+R    T+  D G   H +    G   ++     Y   
Sbjct: 322 NLRRFWMPLRRAVGLDGVVFHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAHA 381

Query: 326 A--DRIRLGIKNSRRISSVVDSDDP 348
           +  ++ R       ++   +    P
Sbjct: 382 SMGEKRR----ALGKLDGHLTEPRP 402


>gi|256854144|ref|ZP_05559509.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256958074|ref|ZP_05562245.1| phage integrase [Enterococcus faecalis DS5]
 gi|307268339|ref|ZP_07549720.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|256711087|gb|EEU26130.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948570|gb|EEU65202.1| phage integrase [Enterococcus faecalis DS5]
 gi|306515365|gb|EFM83899.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 393

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 109/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ GK  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHL---------- 217
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 218 -----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINN 259
                             N+I  I        I  +      + L      K    F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHISDE--VTKEATDAFSSYVN 392


>gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 269

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 76/259 (29%), Gaps = 19/259 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
             EY       +L+ N+  S+    +             ++  ++ +          P +
Sbjct: 7   FEEYL---RKENLSDNTITSYLWTANYFTENY-----DSVSKDNLLAYKGYLMEFFKPKT 58

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++    ++   Q+       +  +           +     Q       E  + 
Sbjct: 59  VNLRIQAINKYLEYLEEQQLQLKTVKVQQKNFLENVISNADYNFLKKQL---KKDENIEW 115

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                +L  +G R S+  +  ++H++   F + T+                 ++ L  T 
Sbjct: 116 YFVVWYLAATGARVSELIQIKIEHIEIGYFDLYTKGGKLRRLYIPKKLKKETLEWLEKTH 175

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                 F+N    ++     S   K  A K G++K     H  R   A    +       
Sbjct: 176 RSSGYLFLNRYGDRITTRGISQQLKNYAEKYGLDKKVVYPHSFRHRYAKNFLEKYNDIAL 235

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 236 LADLMGHESIETTRIYLRR 254


>gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36]
 gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36]
          Length = 341

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 95/331 (28%), Gaps = 32/331 (9%)

Query: 15  RTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +  H K      Y +   G+RIR           A+          + ++         L
Sbjct: 7   KDGHKKPWLCECYPQGSKGKRIRKR-FATKGEATAFERYTMNEIDDKPWLADKTDNRR-L 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
             L+  + K  H  +L      ++      +  +  D      T K       +R     
Sbjct: 65  SELLDLWWK-LHGKNLKSG-AHAYRR-LQIMCEQLNDPIAATFTAKDFAHYRANRLTVGQ 121

Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  + + SS    L  M+VLF    R +E+   NP   ++  K     +   T + 
Sbjct: 122 GKGRSGAELSISSQNYDLLWMKVLFNELRRLKEWNQPNPLKDMKTIKTAERELSYLTHDQ 181

Query: 179 MQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + Q            Q     +  L +G R  ++       +  +  +    K     TV
Sbjct: 182 ITQLLTFVQRSPISGQMTQIIKICLATGARIMEAIELKGAQVTKHKITFTNTKGKKNRTV 241

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
            + +     +     G+          K     FS   K +AT        H +R   A+
Sbjct: 242 PISEDLYNEIYQNTSGRLFTCGYGVLHKWLNLCFSDLPKGQAT--------HILRHTFAS 293

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
                G     L    G   + Q   Y+  A
Sbjct: 294 YFMMNGGNILVLQKILGHADIKQTMAYSHFA 324


>gi|301647024|ref|ZP_07246858.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
 gi|301074822|gb|EFK89628.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 146-1]
          Length = 401

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 104/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 30  QKIKIRKMTISRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 86

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 87  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSG 146

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 147 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 206

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M P        +       ++ F   ++    +  +    
Sbjct: 207 TKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSY-----TSSGFKSAWRTALQELKIENLH 261

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 262 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 321

Query: 344 D 344
            
Sbjct: 322 A 322


>gi|256961377|ref|ZP_05565548.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|293387222|ref|ZP_06631780.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
 gi|256951873|gb|EEU68505.1| prophage ps2 protein 01 [Enterococcus faecalis Merz96]
 gi|291083360|gb|EFE20323.1| prophage LambdaSa03, site-specific recombinase, phage integrase
           family [Enterococcus faecalis S613]
          Length = 378

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 104/370 (28%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    +K  +L+
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKEQKKVSLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 67  NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 126 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLN 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 186 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGRPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 366 KTNLVEALNK 375


>gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19]
 gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19]
          Length = 407

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 82/299 (27%), Gaps = 24/299 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL      + ++       +  V S  ++ + +  I R         D  +  +    I 
Sbjct: 108 TLLGYFRRFIRNFEKRVGINRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFID 167

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                    R   P + I     ++ +   A+    +  +P +  E P R     +  T 
Sbjct: 168 KYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PMRPKHVQKYLTA 226

Query: 177 EDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
           E++ +  +           R  F F  ++G+   D       +L    +           
Sbjct: 227 EELHRIMTTPLHRQTLYHVRDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQK 286

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        L +      T   +        +  +++ K  A    +++    H  
Sbjct: 287 TKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCNSTLNLYLKEIARICHIDRPLVFHAG 346

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           R   AT      G     +    G   ++  + Y K  D         + ++  +    
Sbjct: 347 RHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKIDADT--KALNRKISERF 403


>gi|256844463|ref|ZP_05549949.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|293380410|ref|ZP_06626481.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
 gi|256613541|gb|EEU18744.1| integrase [Lactobacillus crispatus 125-2-CHN]
 gi|290923093|gb|EFE00025.1| site-specific recombinase, phage integrase family [Lactobacillus
           crispatus 214-1]
          Length = 350

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 91/330 (27%), Gaps = 31/330 (9%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKW 73
            R            HG+R  L    ++          + +   ++       +  T  K 
Sbjct: 6   KRGSSYRARVTIYQHGKRDYLTKSFKTEKEAKVW---STTLELQKAKGQAIAQQNTLFKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               + ++     +   +  ++      I          K+    ++S ++     H+  
Sbjct: 63  FYYLFVQTVKVHDVRKATFDNYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKK 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SE 188
           +  + L  +R   ++A  + Y+  +    ++   ++       +          +     
Sbjct: 123 TVTELLKKIRTALRYAYVKGYIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHT 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTII 233
            ++  L     + +GLR  +      + +  +                     +   +  
Sbjct: 183 DNEFNLMVLLEISTGLRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRR 242

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           +V +P     LL         +  +    K +        K    K G+   + HG+R  
Sbjct: 243 SVTIPKNIYDLLKDISQKDSGYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDT 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            A+           +    G  ++   E Y
Sbjct: 298 HASFLFSNNIPLSYVSRRLGHDSILTTEKY 327


>gi|298693589|gb|ADI96811.1| putative prophage integrase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 401

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/401 (10%), Positives = 115/401 (28%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++ +  Y + +          +R+   L    +     A          K   
Sbjct: 2   WIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLHD 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  M+         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQVIQIRDFILNDSNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 TFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                             M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPNYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G        + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14]
 gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14]
 gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 407

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 79/295 (26%), Gaps = 22/295 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSG-- 122
            +  I  + K     +    +  S+    + +           D  +  +    I +   
Sbjct: 113 FRTFIEHFEKRVGV-NREKGTAQSYRYACNCVAAFIQEKYKLSDVPFTALNRSFIDNYDL 171

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R+    + +  +T +  +   A+ +  +  +P    E    + E  +  T  ++Q
Sbjct: 172 YLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEAEHPEREQ-KYLTAAELQ 230

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           +  +      +       F F  Y+G+   D CR   +   +  +               
Sbjct: 231 RLMTTPLHDPKLYHIRDLFLFSCYTGIPYGDMCRLTTEDLEVAEDGEVWIKTARKKTKID 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                    L +    ++           +  + +   K  A   G+ +    H  R   
Sbjct: 291 YEVPLLDIPLLILDKYRDMAPEGKLLPMYSNNELNRTLKRIAAICGIERKLVFHCGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT      G     +    G   +   + Y K  D         R +   +    
Sbjct: 351 ATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKIDMDT--RSLEEKIAGRF 403


>gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 27/292 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---S 131
            Y           ++  S+           G  +  Y  I  + +              +
Sbjct: 12  AYIAHLREVG-RYSTAKSYLDALRSFKCFCGMEEIPYAYIDKERLLLYQAWLSKRGCMRN 70

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGS 190
           +   ++  +R ++  AV    V+  P L            +     + ++          
Sbjct: 71  TVSTYMRRIRHIYNLAVEAGEVSYIPNLFKGVFTGVESKRKKALPLDSLRSLMGTPRVEP 130

Query: 191 QPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           + R           +SG+   D      +++++ + S   QK+G+ I VE+P     LL 
Sbjct: 131 EMRRTQLCFCLMFSFSGMAFVDFAHLRKENVKDGVLSYHRQKSGSFIRVEIPADVRLLLD 190

Query: 247 MTPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAGV--NKSAHGVR 290
              +  +                             F+   ++ A   GV    +++ +R
Sbjct: 191 ELAVCTDKDSPYLFPFLSGKKTGEAAYAEYNGALLRFNRDLRSLAETCGVGEPVTSYTIR 250

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              AT   +       +    G  ++   + Y K     RL   N     SV
Sbjct: 251 HSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAVNRACFESV 302


>gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
             ++K       + ++   + + ++ +           D  +R++T   IR      ++ 
Sbjct: 122 EGFKKLVEKAERSQSTYNKYITVYNHLTTFIKERYHRDDMAFRELTADFIREFDFYLRYD 181

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             S+   +      +  L + A+++  +  NP    E    +T+      ++  +     
Sbjct: 182 LQSSHNTVWVYTMPVLSLVELAIKKGLIRDNPFQDYEINMEETDRGYILKEDVERLMMCA 241

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    +  F F  ++GL  +D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PSHPRYELVKDLFIFSCFTGLAYADIKKLTRNNIQSFFDGHQWIISRRKKSDIASNVRLM 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K      N+      T  +          KA +      + H  R    T+ 
Sbjct: 302 EIPKRIIEKYQGTTRNEFIFPVPTNATCNTHIGKLVEKAEIITEQKVTFHTARHTFGTMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|210630655|ref|ZP_03296537.1| hypothetical protein COLSTE_00422 [Collinsella stercoris DSM 13279]
 gi|210160388|gb|EEA91359.1| hypothetical protein COLSTE_00422 [Collinsella stercoris DSM 13279]
          Length = 357

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 114/362 (31%), Gaps = 43/362 (11%)

Query: 11  VTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           VT+++ R+G      +++  +G+R         T   A          +  Y        
Sbjct: 3   VTRDK-RNGTWCVQAWYKTYNGKRAHKVKRGFKTKPEALA------WERDFYAVQAGDMD 55

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126
             L   +  Y+K      L +N+  + ES    +I+   G+    +I    I        
Sbjct: 56  MKLVDFLELYKKDMGPR-LRLNTWKTKESIITKRILPYLGEKRMNQIAPVDIVRWQNELM 114

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKE 177
                     + +        +  LF  AVR   ++ NPC   E    K+ + +R WTK+
Sbjct: 115 ALEKPGGGGFSATYLKTVNNQLCALFNHAVRFYGLSSNPCRRAESMGSKSADEMRFWTKD 174

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--- 234
              +F     +      AFE L + G+R  +      +       ++   ++   I    
Sbjct: 175 QYLRFSDEIMDKPLSFHAFETLYWCGVREGELLALEPRRFDFERGTLTVAESYQRIDGQD 234

Query: 235 ---VELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGV 282
                      +++AM     E             +     +     S      +  AG+
Sbjct: 235 VLTDPKTPKSKRVIAMPRFYAEEMEAFLSALDLDPDERIFPVTKYFLSHEMARGSKAAGL 294

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-----GADRIRLGIKNS 336
                H +R    ++  D G TA  +    G +  D    Y        AD  R  +  +
Sbjct: 295 EPIRIHDLRHSHVSLLIDMGFTALAIADRMGHEAADITYRYAHLFPSVQADMAR-ALDGA 353

Query: 337 RR 338
           RR
Sbjct: 354 RR 355


>gi|294085081|ref|YP_003551841.1| putative site-specific integrase/recombinase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664656|gb|ADE39757.1| probable site-specific integrase/recombinase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 326

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 106/320 (33%), Gaps = 21/320 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R    R     +  +S  +       T    K   + S     TTL+ L
Sbjct: 5   RKRGKSWNAQVRIAGWRSFTKSFKLKSDAVC--WVQQTEHQLKNTSLPSVDVGDTTLREL 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHTPS 131
           +  Y K      L  +   +++   +   +    +     +T +H     + R  +    
Sbjct: 63  LQTYAKEVSSH-LKGSEIETYK--LNLYSKHPIAENKLVNLTQRHFEHLRDERLKQVKSG 119

Query: 132 SAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +    L   R +FK A+ +    +  NP   ++ P       R     + +   +  S  
Sbjct: 120 TVHADLMMFRRVFKTAIHKWGYGLPKNPVEYLQLPSPHKSRKRRLMPSEKEHLLTAASLQ 179

Query: 190 SQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLL 245
               +A   EF + +G+R S+  +     +            K G    V L    +++L
Sbjct: 180 RNIYIASIVEFAIETGMRRSEILKLRWCDVDLENGFASLYDTKNGEDRRVPLTRRCIEVL 239

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304
              P   E  F       ++AT   + +     KAG+ +   H +R  + +   + G + 
Sbjct: 240 QTVPHTNEQVF------PISATCLRLAWNRARKKAGITDLRFHDLRHEAVSRFFEMGMSV 293

Query: 305 HELMATYGWKTVDQAETYTK 324
            E+    G K V Q   YT 
Sbjct: 294 PEVALISGHKDVRQLFRYTH 313


>gi|257065330|ref|YP_003145002.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
 gi|256792983|gb|ACV23653.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM
           20476]
          Length = 443

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/402 (11%), Positives = 104/402 (25%), Gaps = 85/402 (21%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-L 87
            G+R R+      T   A   A      + E   S   +         E+ K+      L
Sbjct: 36  TGKRQRIKRVVRGTKSDA-RKARDAIRREYESGLSFESESMGFSEFAREWCKARKTTGAL 94

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---------HTPSSAIQFLT 138
              +    E     +    G+   + IT + +    ++ +         ++ ++  +   
Sbjct: 95  REKTLARDEQTVRLLSGYLGNVKLKDITPQMVERLYDAIREDKRKTGKPYSETTMNRMHG 154

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------------------- 179
           +MR +   A R + +  NPC  V+ PK +    +   + +                    
Sbjct: 155 TMRQIMDKAERYDLILRNPCKRVDPPKIEDSDRKSLGRAECVKLLRAIDSEESEMEQGYR 214

Query: 180 --------QQFKSFWSEGSQPRL----------AFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                           +G + RL          A    L +G+R  +        +    
Sbjct: 215 AKEQRREEWNAARNAKKGPRGRLYGLGNLGRLEAVRIGLATGMRLGEVHGLKWSDVVLAE 274

Query: 222 FSIKT------------------------------QKTGTIITVELPDGFMKLLAMTPIG 251
              +                                               ++L      
Sbjct: 275 RGGEWGGVISVSKSLSFSGKLQSPKTKAGNRSINIDAHTAERLSWWKRTQAEMLGKIGRE 334

Query: 252 KETFFINNDKQ---KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
           +               +   F  W++   T+AG+     H +R   AT    AG     +
Sbjct: 335 QGPDTFICCNDEGGSGSIPNFERWWREFRTRAGLPGLRYHELRHTQATQLLAAGVDVKTV 394

Query: 308 MATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               G        + Y     +    +K +  + ++++ + P
Sbjct: 395 QNRMGHANASITLDWYAHA--QPENDVKAAALMGAIMEEEPP 434


>gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium]
          Length = 163

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQTAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|82750021|ref|YP_415762.1| phage-related integrase [Staphylococcus aureus RF122]
 gi|82655552|emb|CAI79946.1| phage-related integrase [Staphylococcus aureus RF122]
          Length = 401

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/401 (10%), Positives = 116/401 (28%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIRLP--YPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++ +  Y + +          +R+ +      +     A          K   
Sbjct: 2   WMEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVALNKNTKQAQKEAMFRLEEKIKEKLHD 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSSILKTLTFHSLLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  M+         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQGIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 --------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F       M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G        + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|293404020|ref|ZP_06648014.1| integrase [Escherichia coli FVEC1412]
 gi|298379800|ref|ZP_06989405.1| integrase [Escherichia coli FVEC1302]
 gi|291428606|gb|EFF01631.1| integrase [Escherichia coli FVEC1412]
 gi|298279498|gb|EFI21006.1| integrase [Escherichia coli FVEC1302]
          Length = 293

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 94/280 (33%), Gaps = 17/280 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL   +  Y K      +   + I++ S    I R   D     ITTK I + +  
Sbjct: 8   DNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAMLNG 67

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              +   +SA    +++   F+ A+ + ++  NP  +    K +    R    E ++ ++
Sbjct: 68  YIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQ 127

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +  S     RLA E  + +G R  D C      + +    ++  KTG  I +        
Sbjct: 128 AAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDA 187

Query: 244 LLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NKSAHGV 289
           L        +                ++ +++   S +F      +G+       + H +
Sbjct: 188 LGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHEL 247

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R  SA    +   +        G K+   A  Y     R 
Sbjct: 248 RSLSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDDRGRE 286


>gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            +++K       + ++   + + ++ +           D  +R++T   IR      ++ 
Sbjct: 122 EDFKKLVDKEERSQSTYNKYITVYNHLTAFIKERYHRDDMAFRELTGDFIREFDFYLRYD 181

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             S    +      +  L + A+++  +  NP    E    +T+      ++  +     
Sbjct: 182 LQSTHNTVWVYTMPVLSLVELAIKKGLIRDNPFQDYEINMEETDRGYILKEDVEKLMMCA 241

Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                   +   F F  ++GL  +D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PPHPRYELVKDLFIFSCFTGLAYADIKKLTRNNIQSFFDGHQWIISRRKKSDIASNVRLM 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K      N+      T  +          KA +      + H  R    T+ 
Sbjct: 302 EIPKRIIEKYLGSTRNEFIFPVPTNVTCNTHIGKLIEKAEIITEQKVTFHTARHTFGTMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNILTTQIYAKITSQK 393


>gi|193070069|ref|ZP_03051016.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192956666|gb|EDV87122.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 339

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 97/340 (28%), Gaps = 34/340 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            P       V   R R      Y  K  G    +               +       E  
Sbjct: 3   RPRKNKKDNVLPPRVRS-NGYSYVWKPEGSTRTIGLGRVRKTS------VAKVWQNYELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V    + +   R     D Q
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFSLKARTVYITDEQ 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               +     Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 173 YAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +                   K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                     G +       +     G KT +Q   Y + 
Sbjct: 292 -------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|83814313|ref|YP_444939.1| phage integrase family site specific recombinase [Salinibacter
           ruber DSM 13855]
 gi|83755707|gb|ABC43820.1| site-specific recombinase, phage integrase family [Salinibacter
           ruber DSM 13855]
          Length = 297

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 32/297 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           L+    +Y +       +  +  ++    +   +     +  + T   +R      +E R
Sbjct: 5   LQAFQDDYLEDK-----SDETVGTYRRSLNSFEKWFVQQNTFRFTEDGVREYKRYLMEDR 59

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183
             +  S   +LT++R   ++      +  NP   V+  +R     R    E   +     
Sbjct: 60  DLSQVSVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAV 119

Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    +       +LY+GL   +  RA V+ L++ +     +  G    V+  +  
Sbjct: 120 VDDATQIDKRDHAIISLMLYAGLSEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQEAP 179

Query: 242 MK---------LLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVNK-- 284
           +           L           +       +                   +AG+ +  
Sbjct: 180 LDPPVLEAVEAYLDTRDDVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAGIKRKG 239

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
            + H +   +A +  + G    E+       T+D    Y K    ++   ++   + 
Sbjct: 240 VTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIYYKKQGLLKRDPEDLEELD 296


>gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
 gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279]
          Length = 391

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 87/352 (24%), Gaps = 56/352 (15%)

Query: 26  RKGHGRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           R   G+ IR    +PH +T   A   A T +            +   L  L+++Y +   
Sbjct: 21  RGIDGKAIRPYKRFPHAATESEALELAETWAANLTADGTVKSAR---LTDLLADYVQLRE 77

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAI 134
               + NS  ++  +   + R     + R ++        ++              +S +
Sbjct: 78  RNGASPNSIRNYRLFTRYVARFLKTANARDLSVMDFNRFEQALLTPKAEGGQGLCKNSVL 137

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------------IRPWTKEDMQQ 181
                +R  +   V  E    NP + V +P  +                 +  T  ++  
Sbjct: 138 NVHHFLRGAYNHFVDAEICEANPLVFVAKPSPERHEASVIVEWDFEFLNEKLETAMNVTD 197

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------TQKTGTII 233
             +     +    A    L +G+R  + C      ++     +           +     
Sbjct: 198 PSTADYRRAVYAFAAWLALVTGMRVGEVCAVSRSDVKRYQMFLHVGGTVIEEPGRKPYRR 257

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ------------------KMNATQFSIWFKA 275
            V        +                +                    M     S  F  
Sbjct: 258 NVTKGRKCRNIAVTAEDIAVIDSFIRTQNAVLGRLDADAPLVTLDGSYMRTRTVSRAFSR 317

Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                G+    + H +R   A+     G     L    G          Y  
Sbjct: 318 IRDSCGLSREITFHSLRHTHASWLIANGCDIKTLSERMGHADEATTLRIYGH 369


>gi|152990189|ref|YP_001355911.1| phage integrase family site specific recombinase [Nitratiruptor sp.
           SB155-2]
 gi|151422050|dbj|BAF69554.1| site-specific recombinase, phage integrase family [Nitratiruptor
           sp. SB155-2]
          Length = 378

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 100/350 (28%), Gaps = 44/350 (12%)

Query: 17  RHGKIIY-YFRKGHGRRIRLPYPHESTFIPA----------YMSALTGSTPKREYINSPR 65
           R GK +Y  F  G   + +     ++                   ++G           +
Sbjct: 19  RRGKKLYLQFMVGGKPKQKSTGLDDTKANRQLVKKHLIPKLEAKIISGELEAELKA---K 75

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--V 123
           + P   ++   +Y            +        D++I    D D   IT   I+     
Sbjct: 76  ETPKAFRYYAEKYLLLKEQLK----TYDELSKQVDKLIEVF-DKDIDAITRGEIKEWSAF 130

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             R  TP +  ++L  +  +F  A+    +  NP   ++ P    +   P++ ++++   
Sbjct: 131 ALRDKTPKTVRKYLNLLGSIFDTAIEYGVIKDNPARKIKLPVHIEKHKEPFSSDEVELLL 190

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------SIKTQKTGTIITV 235
           S  S   +  LA     ++G+R  +        +                   T   +  
Sbjct: 191 STASGWFRNYLAIA--FFTGMRPGEIIALTKDDVNLKRRTINVSKARRYGKTTTPKTVYS 248

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------IWFKAKATKAGVNKS-AHG 288
                 +  L    + +               QF        ++K    ++G+     + 
Sbjct: 249 IREVPILDALVPYLMDQIENSSYYLFTNSKGDQFWDAKKLHPYWKEVIEQSGLMYREMYA 308

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAET---YTKGADRIRLGIK 334
            R    T    +G  +  EL    G K     E    Y +      L I 
Sbjct: 309 TRHTFITAMLKSGYVSVMELAQIVGHKN--STEIMNNYARFISGEHLKIS 356


>gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 309

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 87/291 (29%), Gaps = 36/291 (12%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR--KH 128
           Y  S     L   SR + +   D I          + +  +  +  +H  +       K+
Sbjct: 23  YLAS-----LGKGSRRTMKQALDAIALLATNQTCDAMNCPWGLLRYQHTMAIRAELMEKY 77

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184
            P++A + L ++R + K A R   +           KR         R  + +++ +  +
Sbjct: 78  APATANKMLAALRRVLKEAQRLGQMTPEDYAKAADIKRVKSSGLPKGRALSSDELGKLLN 137

Query: 185 FWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP 238
              E          A   +L  GLR  +     +  L  N     ++  K      V  P
Sbjct: 138 VCVEDESIFGVRDAAMLMILRVGLRRGEVVNLDLADLDLNEGSVKVRGGKGRKDRVVFFP 197

Query: 239 DGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           +  +  L      +               N   ++++          +  +AG+   + H
Sbjct: 198 ESAIAYLQKWVKIRGDDSSPLLLPISKSGNLVWRRLSDQAVLSIMLGRGEEAGIENFTPH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
             R+  A    DAG     +    G         Y +  D   +  +   +
Sbjct: 258 DFRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKYDRRGDAAKKRAVNLLK 308


>gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 407

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 85/321 (26%), Gaps = 21/321 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR---K 80
             R    +  +      +T      +        ++   + + +  T      EY    +
Sbjct: 79  RIRLAELKEAKRTGRGATTLASQRRALREEEERNKQAQQAAKARFITSGSFWHEYYWPSQ 138

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137
           S          +  +E     +    G       TTK +             P++    L
Sbjct: 139 SHKAQGSLDAEKALWE---KWLCPIIGQIPLATTTTKDLEEVKRRMMKAGRAPATIKYAL 195

Query: 138 TSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLA 195
                ++  A          P   ++ P R  +  R     ++    S    +  +    
Sbjct: 196 ALFSQMWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDTLLSALRDKSQKTHDI 255

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
               L  GLR  +      + +   +    I+  K+       +      +L +    + 
Sbjct: 256 ALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYINQTIRSMLLLNRPDRA 315

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKA---GVNKS-----AHGVRKFSATISADAGATAH 305
              I  D +     + S  F   A +     V  +      H +R   A+     G   +
Sbjct: 316 GDLIFPDYEGKPMARVSKTFGRVADELFNSDVTDTRNRVCFHTLRHTFASRLVANGTPLY 375

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            +    G  ++   E Y   A
Sbjct: 376 NVKELLGHSSLAMTERYAHLA 396


>gi|15801334|ref|NP_287351.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           EDL933]
 gi|15830863|ref|NP_309636.1| intergrase [Escherichia coli O157:H7 str. Sakai]
 gi|168749741|ref|ZP_02774763.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168756477|ref|ZP_02781484.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4401]
 gi|168762555|ref|ZP_02787562.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4501]
 gi|168771006|ref|ZP_02796013.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168776049|ref|ZP_02801056.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168782475|ref|ZP_02807482.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168787614|ref|ZP_02812621.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC869]
 gi|168800450|ref|ZP_02825457.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC508]
 gi|195938769|ref|ZP_03084151.1| intergrase [Escherichia coli O157:H7 str. EC4024]
 gi|208806721|ref|ZP_03249058.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208815352|ref|ZP_03256531.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208822097|ref|ZP_03262416.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209396519|ref|YP_002270055.1| intergrase [Escherichia coli O157:H7 str. EC4115]
 gi|217328258|ref|ZP_03444340.1| intergrase [Escherichia coli O157:H7 str. TW14588]
 gi|254792597|ref|YP_003077434.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. TW14359]
 gi|261227238|ref|ZP_05941519.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261258755|ref|ZP_05951288.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. FRIK966]
 gi|12514791|gb|AAG55963.1|AE005329_7 putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. EDL933]
 gi|13361073|dbj|BAB35032.1| intergrase [Escherichia coli O157:H7 str. Sakai]
 gi|187768527|gb|EDU32371.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015991|gb|EDU54113.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189000064|gb|EDU69050.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189356364|gb|EDU74783.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4401]
 gi|189360144|gb|EDU78563.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189367182|gb|EDU85598.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4501]
 gi|189372539|gb|EDU90955.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC869]
 gi|189377300|gb|EDU95716.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC508]
 gi|208726522|gb|EDZ76123.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208732000|gb|EDZ80688.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208737582|gb|EDZ85265.1| prophage lambda integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209157919|gb|ACI35352.1| intergrase [Escherichia coli O157:H7 str. EC4115]
 gi|217318685|gb|EEC27111.1| intergrase [Escherichia coli O157:H7 str. TW14588]
 gi|254591997|gb|ACT71358.1| putative integrase of prophage CP-933X [Escherichia coli O157:H7
           str. TW14359]
 gi|320187864|gb|EFW62534.1| Phage integrase [Escherichia coli O157:H7 str. EC1212]
 gi|326339416|gb|EGD63228.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
 gi|326341461|gb|EGD65252.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
          Length = 380

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 101/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYNSIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F S        +      L +G R SD C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|320530591|ref|ZP_08031643.1| site-specific recombinase, phage integrase family [Selenomonas
           artemidis F0399]
 gi|320137118|gb|EFW29048.1| site-specific recombinase, phage integrase family [Selenomonas
           artemidis F0399]
          Length = 387

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 96/365 (26%), Gaps = 55/365 (15%)

Query: 14  ERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
              + GK   Y F      R +      ST   AY + +   T  +            +K
Sbjct: 5   RVRKRGKTYSYNFEVSVHPRRQKEKGGFSTRQEAYDAGVAAYTDWKTGNIGLISGRVKIK 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + K+    ++  ++  S+      +II   G+   +++  + + + ++       
Sbjct: 65  DFLTAWLKNVAKPNVKKSTYRSYLNRVTKRIIPYLGEKILQELRPRDVDAWLKQLA-KNG 123

Query: 132 SAIQFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            A   L      +    K+A+    +     ++     + T            +  +   
Sbjct: 124 MARTSLEDSKMVLSTALKYAIYPSELIRANPVTGVPVPQSTPKKVIKRTVIAPEQFAAIP 183

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------ 241
              +    F+ + ++GLR S++       +      ++  +                   
Sbjct: 184 TTGRFYPVFKLMYHTGLRLSEALGLTWDDIDLTTGEVRVVRQRLREGYFETPKTATSTRT 243

Query: 242 --------------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
                             A   +     +    +       F    K      G+ +   
Sbjct: 244 FYADAALLSFLRSLKAAQARDKLRLGEVYQLAYEDTHQGRAFVTLPKKLRPLTGLEQRPL 303

Query: 287 --------------------------HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                                     H  R   AT   +AGA   ++ A  G K     +
Sbjct: 304 VCVYSDGTPYRHTSVACALKKMGLNAHSFRHTHATRLIEAGAKPVDVAARLGHKDAAITQ 363

Query: 321 -TYTK 324
             YT 
Sbjct: 364 NLYTH 368


>gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 329

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 77/288 (26%), Gaps = 36/288 (12%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS-------------GDFDYRKITTKHIRSGVESRK 127
           +     L+ N+  ++   +  +I+               G  D   ITT  +      R 
Sbjct: 16  AYARKGLSPNTIAAYRDTWRLLIKYLTASTGVHADKIDLGMIDAEAITT-FLDHLEADRG 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------TKEDMQ 180
           ++ S+    LT++R +    +            V     +    R         T+  + 
Sbjct: 75  NSASTRNARLTAIRAVLAVTLPDHPEHAGTIARVLAVPTRRGTPRTVQFLSVEETQALLD 134

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP 238
                   G + R      + +GLR S+        +     +  T   K        L 
Sbjct: 135 APDPNTWTGRRDRALLTLAIQTGLRVSELTALTTNDIHTGTGAHVTCTGKGRKYRATPLT 194

Query: 239 DGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKA--------GVNKS 285
              + +L      +        F     Q ++            + A        G + +
Sbjct: 195 SITLTVLTPYLAERAARPGAAAFPGPRGQHLSRDALERRLAKHVSTATEHCPSLGGKHVT 254

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H +R  +A     AG     +    G +     + Y      I+   
Sbjct: 255 MHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHADMTIKQAA 302


>gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 439

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 78/275 (28%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQE 151
               + +   G  D     IT           K       +  + L  +  L   AV Q 
Sbjct: 136 RNLREFVENKGVQDIPIGTITEDLFEEYRFFLKKRGYAAPTINRHLCWLSRLMFRAVSQR 195

Query: 152 YVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  NP  + +  K   +    +      +   K    E    RL F F  ++GL  SD 
Sbjct: 196 IIRCNPFENAKYEKEDRKIRFLQKSEVTKLVAMKMNDRETELARLMFVFSCFTGLAISDM 255

Query: 210 CRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------ 259
                +H Q       +  K ++   +  +       + +      ++     +      
Sbjct: 256 ENLEYRHFQTAADGQQYIRKERQKTKVEFIVPLHPIAEAIISHCRKEQERSEEHLMVKEK 315

Query: 260 -----DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYG 312
                  +  + +             G+ +    H  R    T+S  AG     +    G
Sbjct: 316 GDRLVFHRDCSRSVMDTKLSIVGKACGIRERLSYHMARHTFGTMSLSAGIPIESIAKMMG 375

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D      ++  R+ +   + D
Sbjct: 376 HASISSTQIYAQVTDSK--ISEDMDRLIARYKAKD 408


>gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68]
          Length = 202

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 9/155 (5%)

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--VELPDGF 241
               +  +  L    LL +GLR S+ C   + ++     +I+  + G  +       D  
Sbjct: 22  HSKRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDET 81

Query: 242 MKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
           + LL        +          +   +      +  K  +    + K  + H  R   A
Sbjct: 82  LSLLEDYIAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFA 141

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           T+  D G    ++    G   ++  + YT  +   
Sbjct: 142 TMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSK 176


>gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 406

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   + +  +      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSITKHYARVLDQ 388


>gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269]
          Length = 416

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 19/264 (7%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I ++    D    ++T + I        + +     +   +
Sbjct: 136 RAKGTYPAYIYTRRTLAEFIEKEFHSKDVAFGQMTEQFIHDYQSFILDEKGLAIDTCRHY 195

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEGSQ 191
           L  ++ + + A ++ +           P+ K +  +  ++E  ++ +        +    
Sbjct: 196 LAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKALSRESFEKIRDLVIPEHHASHIL 255

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--- 248
            R  F F  Y+G   +D+      +L  +       K             +KLL      
Sbjct: 256 ARDLFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKY--RRKKNELRACVKLLPEALAL 313

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAH 305
                          ++        K  A  A +  + + H  R   A++   +AG    
Sbjct: 314 IEKYRDDDRPTLFPMLHYPNMRRLMKCLAVLADIREDLTYHAGRHSFASLITLEAGVPIE 373

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y K   + 
Sbjct: 374 TICKMLGHSNLQTTQVYAKVTPKK 397


>gi|309812097|ref|ZP_07705857.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
 gi|308433976|gb|EFP57848.1| site-specific recombinase, phage integrase family [Dermacoccus sp.
           Ellin185]
          Length = 398

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 112/358 (31%), Gaps = 33/358 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +     R  +  +  R       +              +    +  +   +   +++  T
Sbjct: 3   MVSVSKRADQRTWQVRWRDDAGRQRSRQFSLKRDAEAHATEIRTRLESGTLTLTQREKAT 62

Query: 71  LKWLISEY-RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +    + +      W   A ++R    S +   +  +  +    K+T   ++  ++    
Sbjct: 63  VGDAYASWVLAHPEW---AASTRERNASVWKNHVAPRWSEVRLSKVTRAEVQRWIDELPG 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             ++  + L+ +    + AV+  ++A +P   +   +R+    R + + D  Q     + 
Sbjct: 120 AQATRKKALSVLSGPLQLAVQDRWIARSPIADIRVGRREVPKRRRYLQWDQVQALEEAAA 179

Query: 189 G------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                   Q       L  +G+R  +        L      +  +++ T           
Sbjct: 180 ELGGSTWPQATAVIRTLAITGIRFGELAGLQRHDLDTRTRDLHIERSFTEVNGTLVESPP 239

Query: 233 --------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVN 283
                            ++ L +    +   F +   Q +        WF A A K GV 
Sbjct: 240 KNGNPRTIRVPRHVMDLLEPLCVDLNDQAHIFRSPKGQILRNRSVRRGWFDAAAAKIGVP 299

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR-LGIKNSRR 338
             + H +R  +A+I+  +GA+A ++    G  +     +TY+   D           R
Sbjct: 300 DLTPHSLRHTAASIAISSGASALQVRNMLGHASASITLDTYSDLFDTDVGKAADAIDR 357


>gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7]
 gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7]
 gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7]
 gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 81/264 (30%), Gaps = 16/264 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126
           + E+ K       A N+  S+     +YF       G+   + +  +++           
Sbjct: 2   LDEFEKYLLQEGKAKNTIKSYMLHVGNYFKWFRDSFGEDPLK-LYRQNVLEYKSYLEKIK 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF 182
           K   ++    L ++     + + +   + +     +  K +     P T         + 
Sbjct: 61  KENGNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATITKQDVEVFRQ 120

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240
           +   +E ++       L Y+GLR S+     +  +   +    ++  K      V +   
Sbjct: 121 RILQNECNRSYAVVTVLSYAGLRISECLNLKIDDVNLVSKELIVREGKGSKQRIVYINTK 180

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATISAD 299
            +  +      ++              +           K     + H +R F  + + +
Sbjct: 181 IVDAIKEYLKERKKVACEYMFVSNKGNRLDRTVVNKLFNKYSDKITPHTLRHFYCSNALE 240

Query: 300 AGATAHELMATYGWKTVDQAETYT 323
           +G + HE+    G   +     YT
Sbjct: 241 SGFSVHEVANQAGHSNIHTTLLYT 264


>gi|56476174|ref|YP_157763.1| hypothetical protein ebA1360 [Aromatoleum aromaticum EbN1]
 gi|56312217|emb|CAI06862.1| similar to phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 411

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 90/324 (27%), Gaps = 22/324 (6%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-----EYINSPRKKPTTLKWLI 75
           +    + G   R+ L      T   A  +A   +                K   TL    
Sbjct: 51  VYRRLKAGQPERVTLGKFPAMTVEQARKAAALVNAEIESGANPAATKRAFKAEPTLTEFF 110

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSS 132
           +EY        LA       + + D + +  G+    +I    I       E    + ++
Sbjct: 111 AEYGTRHGEKKLA--WPADVQRFRDYLQKPMGNKRLSEIDRAMIAKALSDAEKAGKSVAT 168

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQ 191
                     +F  AV    +  NP   V+   +K    R    +++ +F +    E   
Sbjct: 169 VRNIRALASGVFGKAVEWGRLDFNPAQGVKVAGKKVSRDRFLQADELPRFFAAVAEEDDT 228

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R      L +G R ++ C      L       +  +T       +      ++ +    
Sbjct: 229 MRDFILLALLTGARRANVCAMHWHELDLAAGVWRIPRTKNGEPQTVTLCPEAVMILEARK 288

Query: 252 KETFFINNDKQKMNATQF---SIWFKAKATKAGVNK--------SAHGVRKFSATISADA 300
             T                      +    +AG+          + H +R+   +  A  
Sbjct: 289 DATGGGFVFPGTGRTGHVVEPKKAVERVMARAGIPYGRDVPNGATLHDLRRTLGSWQART 348

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           GA+   +  +   K+      Y +
Sbjct: 349 GASLAIIGKSLNHKSQQATAIYAR 372


>gi|296395312|ref|YP_003660196.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296182459|gb|ADG99365.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 422

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 88/388 (22%), Gaps = 68/388 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKI-----IY--YFRKGHGRRIRLPYPHESTFI--PAYMSAL 51
           MT   +LPP + K   ++ K       Y      G   R       +  F         L
Sbjct: 1   MT-RRQLPPQIKKTTVKNRKTGKDETRYEVVVETGADPRTGRRSQSKRRFATEKEARQHL 59

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
             +  K        K   T      ++        L   +   +        +  G    
Sbjct: 60  ADTQAKVAQGAYVHKNELTFDQACEDFLN--GLHGLKPTTLDGYRFDLAVPRQLLGRLSV 117

Query: 112 RKITTKHI--------------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
           +++  +H                           +K    S    L + + + +  V Q 
Sbjct: 118 QQLAKQHFDNIVRQVQSGTLTRAHRNRNTREGNRKKWGARSVNGMLNTCQRVLEGLVEQG 177

Query: 152 YVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +A NP   V   P             +  +     ++  + R  +  L Y GLR  +  
Sbjct: 178 VLARNPAQLVGRVPNEAKGAAERAHTVEEMRAVLAAAKDGRDRHIW-HLAYHGLRRGEIS 236

Query: 211 RAGVQHLQ-------------NNIFSIKTQKTGTIITVELPDGFMKLLA----------- 246
                 +                   +  Q +    + +       +L            
Sbjct: 237 GLTWGDVDFEAQEVAVRSSRVCVGGKVIEQDSLKSRSSKRTLKGTPVLMAELRAAKARQA 296

Query: 247 -------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297
                             +           +  F     +AG       H  R   ATI 
Sbjct: 297 AERLAHGEDYNDGGWVACDERGNPYRPDTLTRKFAKLQKRAGTKNVIRLHDARHTCATIM 356

Query: 298 ADAGATAHELMATYGWKTVDQAET-YTK 324
              G  A  + A  G          YT 
Sbjct: 357 HYQGVPAASVCAWLGHANPAITMRIYTH 384


>gi|210617226|ref|ZP_03291470.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
 gi|210149427|gb|EEA80436.1| hypothetical protein CLONEX_03692 [Clostridium nexile DSM 1787]
          Length = 409

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 110/409 (26%), Gaps = 72/409 (17%)

Query: 1   MTPSLRLPPFVTKERTRH----GKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M  S + P         +    G+  Y +     G+R+ +                    
Sbjct: 4   MAISRKDPKGRKLREGENWRNDGRYSYRYTDVRTGKRLTVYAQDLPELREKEKQI--AKD 61

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
            +   +     K  TL  L   Y  +     LA  +R+S+   + +++  + G+    ++
Sbjct: 62  MEDNILTDGAIKKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQL 118

Query: 115 TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRK 167
              HI++            S+       +    + AV  + +  NP         +P  +
Sbjct: 119 LPSHIKAYYAKLSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEE 178

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
            E +    +E   +F    +  +     F  ++ +GLRC +      + +          
Sbjct: 179 KEALTVSQQEKFMEFVKQSNVYNTYYPMFTIMIGTGLRCGELIGLTWKDINIKAKTVNVD 238

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------- 254
                              +    I  +       K                        
Sbjct: 239 HQLIYKNLGDGCKFHISTPKTESGIRIIPTTQEVAKAFEEQRKINFMLAKDKSIEVDGYS 298

Query: 255 --FFINNDKQKMNATQFSIWF---------------KAKATKAGV--NKSAHGVRKFSAT 295
              F     + +     +                  K +  KA +    SAH +R  + T
Sbjct: 299 GFVFTAKSGRPLMPNGVNSVLYNIVDAYNKTEVERAKKEHRKAELLPKFSAHVMRHTACT 358

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
             A+       L    G   +D     Y    +  R+  +   R+ S+V
Sbjct: 359 RMAECRMDVKVLQYIMGHAHIDVTMEVYNHIGELTRIENE-IARLDSMV 406


>gi|284991910|ref|YP_003410464.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
 gi|284065155|gb|ADB76093.1| integrase family protein [Geodermatophilus obscurus DSM 43160]
          Length = 309

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 22/291 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
              L  ++  +    + + N+   +    D++        G      +T   +   +   
Sbjct: 15  WTALRRDFATTLRAENKSPNTVRLYTGAVDKLSAWCIETGGPASPLAVTRGDLTRFMADM 74

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +    P +      +++  F W VR+E +  +P   +  P      +   T   +++  +
Sbjct: 75  QTEWKPGTCSLVYRALQQFFGWMVREEEIEKSPMEGMRPPHTPEVPVPVLTDLQLRELLA 134

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPD 239
                     +        + +G R ++     V  +     +I+    G     V    
Sbjct: 135 TCNGRSFTDRRDHAMIRLFVDTGCRRAEIAELAVDSVDLANQTIQVLGKGRRIRVVPFGS 194

Query: 240 GFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGV-NKSAHGV 289
              + L      ++     +             ++        + +    G+ N  AH  
Sbjct: 195 RTAQALGRYLRMRDKDPWAHTGHLWLSEKGRGPLSPGGIVQMLERRGRSVGITNLHAHQF 254

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           R  +A      G +  +LM   GW++V     Y       R      RR++
Sbjct: 255 RHTAAHRWGANGGSETDLMRLMGWRSVQMLRRYAASTADER-ARDAHRRMA 304


>gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120]
 gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120]
          Length = 319

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 93/285 (32%), Gaps = 31/285 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESR--KHTPSSAIQF 136
           SL+  SR + E   + I R            D+ K+  +H  +       +++P++  + 
Sbjct: 30  SLSPTSRRTMEKALNVIARLLTSNQCDAMSLDWSKLRYQHTAAIRAIFIEQYSPATTNRM 89

Query: 137 LTSMRVLFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSE 188
           L +MR + K ++R  ++        + ++  +  +       K +      +        
Sbjct: 90  LCAMRRVLKESLRLGFMSAQDYQYAIDLKSVRGDSGLPGRLIKPEEITSLLRNCLQDNVI 149

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
           G +       L   GLR S++    +          +++  K G    V LP G + +L 
Sbjct: 150 GIRDAALIGILSSCGLRRSEAVALEMNDFNREDNLLTVRQGKGGKSRRVYLPPGVVGILN 209

Query: 247 MTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295
                        I       +   Q +         + +A   G+   S H  R+   T
Sbjct: 210 DWLKIRGKSSGALICPVKRGGHIHIQHLTDQAVMAICQKRADSTGIKPFSPHDFRRTFVT 269

Query: 296 ISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRI 339
              ++G     +    G   +   + Y  +G    R  ++    +
Sbjct: 270 RLLESGIDVLTVSQLAGHVNLATTQKYDLRGEAAKRKAVECLNFL 314


>gi|301058423|ref|ZP_07199444.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447479|gb|EFK11223.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 381

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 86/279 (30%), Gaps = 28/279 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI---RSGVESR 126
                 E+ +     SL  N+   + S F   I    G     +IT   I   R  +  +
Sbjct: 82  FSDWWDEWIEE---KSLRWNTEKGWNSSFKVHIEPYFGHLPIDRITDHEILIFRKRLLRK 138

Query: 127 KHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               S+   + +  + +    A     ++  PC +V R       I P+T ++++ F   
Sbjct: 139 GLKASTINDKIIKPVCMCLFRAYSSGMISSYPCKNVRRLSEDPVDINPFTFDELKHFLET 198

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------FSIKTQKTGT 231
             ++  +    F     +G R  +      +++                      +   +
Sbjct: 199 LKAKAPEYYDLFYIWSRTGARPGEIYALRWEYVDYFNSKLLIRKTRLSSRTDGPPKTPKS 258

Query: 232 IITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
              ++L    ++ L              F+    +  +       F+     AG+     
Sbjct: 259 SRDIDLSPETIEALKRQESRTGLAGGYVFLTGAGRPFSDAFMRKKFRDLLRLAGLPYRPP 318

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             +R   AT++  AG     +  T G  + +   + Y +
Sbjct: 319 KQMRHTFATLALAAGENISWVSKTLGHASEETTWKRYNR 357


>gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513]
 gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513]
 gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513]
          Length = 308

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 79/264 (29%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G    ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCHLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 411

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 84/288 (29%), Gaps = 20/288 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            ++      G  +  +   +E+ +  +           D  ++++T   I       +  
Sbjct: 122 EDFALMVEKGVRSSRTLNKYENVYTHLSEFIQYKYRRSDISFKELTEDFINDFDFYLRVN 181

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              T ++   ++  +  + + A+ +  +  NP  +      + +      +E     +  
Sbjct: 182 KSLTHNTIWVYMMPLCKMVEIAIDKGIIYHNPFKNYISSMEEKDRGYLLREEVEALLQYH 241

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
               S    R  F F  ++G    D  +    HLQ+     K        +    +  + 
Sbjct: 242 PKSASVELVRDLFVFSCFTGFSYIDIKQLKRSHLQSFFDGNKWLIKRRQKSDVPCNVRLL 301

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATIS 297
            +A   I K       +      +  +     +       +      S H  R    T+ 
Sbjct: 302 DIAEKIIEKYEGTTRTEALFPTPSNTNCNLLIRKMMKDCNIIREKPISFHWARHTFGTLF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSVV 343
              G     +    G K +   + Y K  +    +     + R+ ++ 
Sbjct: 362 LTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEIAAERLKNLK 409


>gi|303250872|ref|ZP_07337065.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246987|ref|ZP_07529049.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253724|ref|ZP_07535588.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255956|ref|ZP_07537755.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259763|ref|ZP_07541483.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650287|gb|EFL80450.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306852107|gb|EFM84350.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306858800|gb|EFM90849.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861086|gb|EFM93081.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866153|gb|EFM98021.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 267

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 75/262 (28%), Gaps = 12/262 (4%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           ++K     +LA N+  ++     Q  +   D     +    +        + P +    L
Sbjct: 5   FQKYLSNQNLAKNTVSAYLFAVKQFYKLFPDITKSHLKEYKVFLIE---HYKPQTVNLRL 61

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++    ++  ++++      +  +           +      + +              
Sbjct: 62  RAINCYLEFLKKEKWKLTFVKVQQKPFLENVISEADY---HYFKQRLKEDNELYWYFVIR 118

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKET 254
           F+  +G R S+  +  V+H+      + ++                  + L  T      
Sbjct: 119 FMAATGARVSELIQIKVEHINIGYLDLYSKGGKLRRIYIPLALQQESREWLDKTNKLSGF 178

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311
            F+N   +++     +   K  A +  +       H  R   A    +       L    
Sbjct: 179 IFLNKYGERITTRGIASQLKILAKRYKLEPKVVYPHSFRHRFAKSFLERFNDIAFLADLM 238

Query: 312 GWKTVDQAETYTKGADRIRLGI 333
           G ++++    Y +     +  I
Sbjct: 239 GHESIETTRIYLRKTATEQQAI 260


>gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7]
 gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13]
 gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
 gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13]
 gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19]
 gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3]
          Length = 310

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 88/276 (31%), Gaps = 28/276 (10%)

Query: 90  NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
           ++  S++   +  +R  G     Y  +  +++R       ++  T ++   ++  +R ++
Sbjct: 24  STAKSYQDALNSFMRFCGLEVIPYIYVNKENLRRYQAFLLNKGCTWNTVSTYMRRIRCVY 83

Query: 145 KWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
             AV +      P L          KRK    +   +  M             +      
Sbjct: 84  NMAVEEGLAPYIPYLFKGVFTGIESKRKKALPQDLLRSLMTASLDDPELRKTRQALCLMF 143

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--------------LL 245
            + G+   D      ++++  +   K QKTGT + +E+     +               L
Sbjct: 144 QFCGMAFVDFAHLKKENVRGGVLEYKRQKTGTPMLIEVQSTAWESLRELSSDVGKDSPYL 203

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGAT 303
                G +       +       F+   K  A   G  +  +++ +R   A I  +    
Sbjct: 204 FPFLKGIKVGKEAYKEYTSALAHFNRNLKRLARACGVSIPITSYSIRHSFAMILKEQDVP 263

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              +    G K++   + Y K     ++      +I
Sbjct: 264 IEMISELLGHKSIKTTQIYLKSFSLEKM--SAVNKI 297


>gi|331672648|ref|ZP_08373437.1| integrase [Escherichia coli TA280]
 gi|331070291|gb|EGI41657.1| integrase [Escherichia coli TA280]
          Length = 380

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 100/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|307273987|ref|ZP_07555197.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
 gi|306509295|gb|EFM78355.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0855]
          Length = 387

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 103/374 (27%), Gaps = 59/374 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + +   G   + ++         G  +R                  L     + E   
Sbjct: 4   IQQYKKSDGTTAWLYKVYMGKDPVTGKEKRTTRRGFKTKKEAS---LDLARFQIEIESTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
                  T   L   +    H  ++   +    +++F +QI+   G      IT    + 
Sbjct: 61  ISHHSIKTFSELYDLWMN-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQK 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKE 177
            +        S  +  +    +F + +    +  NP      PK            +TKE
Sbjct: 120 ILTEWSTKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHSFNEIEEEFYTKE 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI-------------- 221
           +++QF     E    R    F L  Y+G R  +      + +  +               
Sbjct: 180 ELRQFFDCLQELKDDRALTFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSD 239

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                  T+   +  T+ + DG + +L           ++   +  N             
Sbjct: 240 GSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNIDDVPVISTIKAN 299

Query: 270 -----------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      +      A K    K    HG RK  AT+  +AGA   ++    G  + 
Sbjct: 300 KKRDFLYNGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSS 359

Query: 317 DQAE-TYTKGADRI 329
                 Y + +   
Sbjct: 360 KTTMDIYIQVSKNR 373


>gi|289164299|ref|YP_003454437.1| phage-related integrase [Legionella longbeachae NSW150]
 gi|288857472|emb|CBJ11300.1| putative phage-related integrase [Legionella longbeachae NSW150]
          Length = 411

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 97/331 (29%), Gaps = 27/331 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEY 78
           F      RI L +  E T   A   AL                 +   +  TL  +  +Y
Sbjct: 52  FINKKRCRITLGHYPELTAEMAKNKALHLLGQIAMGIDPVAEKKAAEIQDITLNQVFKDY 111

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQF 136
            K+    +L   +  +++   D+            IT   I    E        + A   
Sbjct: 112 IKTR--KNLKPKTLDNYKHILDKAFTSWKSKPMLSITRDKIAKYHEKLGQERGEAYANLA 169

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------EDMQQFKSFWSEGS 190
           +  +R LF +A  Q        L ++ P ++    R W +             + W  G 
Sbjct: 170 MRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGL 229

Query: 191 QP------RLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGF 241
           Q       R     +L +GLR  ++       L          KT+   +         +
Sbjct: 230 QQIQNETLRDYLLLILMTGLRRQEAATLKWSDLDLKAKTFTINKTKNNESHTLPLSDFLY 289

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
             L+A        +         +  +           +GV+ + H +R+   TI+    
Sbjct: 290 DLLIARKAKAINDYVFPGPGAAGHIIEPRKQMAHVTKNSGVHFTVHDLRRTFITIAESLD 349

Query: 302 ATAHELMATYGWK-TVDQAETYTKGADRIRL 331
             A+ L      K + D    Y    D  RL
Sbjct: 350 IPAYALKRLMNHKMSNDVTAGYI-IVDVERL 379


>gi|323443478|gb|EGB01094.1| phage-related integrase [Staphylococcus aureus O46]
          Length = 401

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 116/401 (28%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++ +  Y + +          +R+   L    +     A          K   
Sbjct: 2   WIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLHD 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  M+         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQVIQIRDFILNDSNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 --------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F       M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G        + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735]
 gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735]
          Length = 444

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 76/274 (27%), Gaps = 31/274 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S    + ++       +     D   + I    I        R  ++ R    ++   +
Sbjct: 121 KSRTEGTYLNLSYADRNLHEFVKDKGVQDILIGAITEDLFEEYRFYLKKRGLKGTTINNY 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV Q  +  NP  + +  K        + +    +   +   SE  Q RL
Sbjct: 181 LCWLSRLMYRAVSQNIIRCNPFENAKYEKEDKNIRYLQKYNVARLMAMRMNDSEAEQARL 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------------IITV 235
            F F  ++GL  +D      +H+Q      K  +                          
Sbjct: 241 MFIFSCFTGLAIADMETLQYKHIQTTADGQKYIRKERQKTKVEFVVPLHPIAETIISHCR 300

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +     +         KE           + +  +          G+    S H  R   
Sbjct: 301 KANHNDLTTRQDEQTMKEKGDGFVFHPDSSRSVMNSKLYIVGKACGISQRLSFHMARHTF 360

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            T+S  AG     +    G  ++   + Y +  D
Sbjct: 361 GTMSLSAGIPIESIAKMMGHASISSTQIYAQVTD 394


>gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 325

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 8/270 (2%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  IS +            +      +   I R+S      +IT   +      RK + 
Sbjct: 12  WEAAISGWMIWLRIAGKREGTIELRRDHLRSIARRSRTSGPAEITLSTLVLLCSERKWSN 71

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                  TS+   + WA+  + V++NP    + P+ K +   P    D    +   +   
Sbjct: 72  DHRKSVRTSLISFYDWAIDADLVSMNPAA--KLPRVKPDLPAPRPAPDDVWEELLAAAQP 129

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFMKLLAM 247
           + RL       +GLR ++        L  ++         K G      L DG    L  
Sbjct: 130 RERLMARLAGEAGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPLNDGLTAELRA 189

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                   F       ++A                  S H +R   AT+          +
Sbjct: 190 FCTSHGYLFPGQVDGHISAEWVGTVISRLM---PPGWSMHKLRHRFATLGYSGTGNLRAV 246

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSR 337
               G  +V   + YT  + R    + ++ 
Sbjct: 247 QEALGHASVATTQRYTAVSTREVRSVADAA 276


>gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
 gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216]
 gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 98/309 (31%), Gaps = 26/309 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISF---ESYF-DQIIRKS 106
           +T  +E +    +   TL   +  + +         +A +S  ++     Y  + I ++ 
Sbjct: 93  ATAVKELLQGSVETQMTLLKRLDMHIEDMRSRIGIDVAKSSMSTYIYTRRYLGEFIQKRF 152

Query: 107 GDFDYR------KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D         I  +     ++ +     +   +L  ++ + + A ++ +      ++
Sbjct: 153 KTNDVAFGQLNEHIPWEFQDYILKDKGLAVDTVRHYLAILKKICRIAFKEGHAEKRYFVN 212

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQ 215
            + P+   +  R  ++ED ++ +       +      R  F F  Y+G+  +D+      
Sbjct: 213 FKLPQENRKPPRALSREDFEKIRDVVIPPERITHNIARDLFLFACYTGVPYADAVSITGD 272

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           ++  +       K        L    +  + +A+    +            +        
Sbjct: 273 NIYKDDKGDLWLKYLRKKNEYLARVKLLPEAIALIEKYRSNDREELFPMIHHPN-MRRHM 331

Query: 274 KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K     AG+  +   H  R    ++   +AG     +    G   +   + Y +   +  
Sbjct: 332 KGLRDLAGISCDLVYHMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKK- 390

Query: 331 LGIKNSRRI 339
              ++  + 
Sbjct: 391 -LFEDMDKF 398


>gi|29565931|ref|NP_817502.1| gp53 [Mycobacterium phage Cjw1]
 gi|109302806|ref|YP_654808.1| gp53 [Mycobacterium phage 244]
 gi|194303347|ref|YP_002014372.1| gp51 [Mycobacterium phage Porky]
 gi|29424656|gb|AAN01667.1| gp53 [Mycobacterium phage Cjw1]
 gi|88910097|gb|ABD58028.1| gp53 [Mycobacterium phage 244]
 gi|194150832|gb|ACF33868.1| gp51 [Mycobacterium phage Porky]
 gi|255928372|gb|ACU41988.1| gp54 [Mycobacterium phage Pumpkin]
          Length = 293

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 16/284 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
           L  L   +         +  +  ++    +  +    + +   +    + + V S     
Sbjct: 6   LAELKDSWLMELRAARKSAETIRAYGGSVEGYLNFCVEGELAPLEKASLLAWVNSMASLQ 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSF 185
           P++    LT+++   +W   +E V ++  L V  PK   + ++  +   +Q         
Sbjct: 66  PATVHLRLTAVKQFMRWVADEEGVNVDGLLVVRPPKLDQKVVKHLSDRAVQALVATCAGN 125

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------TQKTGTIITVE 236
                + +        +G+R ++     V+ +      +           +   + +   
Sbjct: 126 TFRDRRDKALIVLFTETGIRAAEMLALDVEDVSLVDCQLTVRRGKGAKGRRVKYSPMCAA 185

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
             D +++       G E         +++ T      K +A  AGV     H +R  SA 
Sbjct: 186 TIDKYLRARRRAGHGSEGPLWIGLGGRLSYTGMKSSLKRRADDAGVPGFHPHRLRHTSAV 245

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
               AG +   LMA  GW++  Q + Y K A    L      R+
Sbjct: 246 RWLKAGGSEAGLMAQAGWQSRRQIDRYIKSAAEE-LASDEFDRL 288


>gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68]
 gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038]
 gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292]
 gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870]
 gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68]
          Length = 312

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 44  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 100

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 101 GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 160

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 161 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 219

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 220 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 274

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 275 DIRRVQMWLGHQTLQMTMRYAHLA 298


>gi|257422023|ref|ZP_05599013.1| predicted protein [Enterococcus faecalis X98]
 gi|257163847|gb|EEU93807.1| predicted protein [Enterococcus faecalis X98]
 gi|315157051|gb|EFU01068.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
 gi|315157428|gb|EFU01445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
          Length = 378

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 104/370 (28%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    ++  +L+
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKDQQKVSLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 67  NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 126 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLN 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 186 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSNGYKNATK 245

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 366 KTNLVEALNK 375


>gi|76787505|ref|YP_330684.1| prophage Sa05, site-specific recombinase phage integrase family
           protein [Streptococcus agalactiae A909]
 gi|76562562|gb|ABA45146.1| prophage Sa05, site-specific recombinase, phage integrase family
           [Streptococcus agalactiae A909]
          Length = 388

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 113/388 (29%), Gaps = 56/388 (14%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + + G +IY         K  G+++       +       +        +      
Sbjct: 3   ITEVKKKDGTVIYRASIYLGTDKVTGKKVTTKITGRTKKEVREKAKQEAIEFIKNGSTRF 62

Query: 65  RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           +    T  + L + +  S    ++  N++++ E      +I   G +   K+TT  I+S 
Sbjct: 63  KATSITSYQELATLWWDSYK-HTVKYNTQLATEKLLTVHVIPIFGAYKLDKLTTPLIQSI 121

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----- 169
           +       +           +     + + ++ V  + +  NP   V  P+   +     
Sbjct: 122 INKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKR 181

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL------ 217
                  +           + ++ R  +E  LY     +G R +++       +      
Sbjct: 182 VKHFENDELRTFFNYLNNLDKNKYRYFYEVTLYKFLLATGCRINEALALNWSDIDLDNAV 241

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                           +   +   +++    + +L      +                + 
Sbjct: 242 VHITKTLNYKQEINSPKSKSSYRDIDIDSRTVTMLKQYRRRQIQEAWKLGRSETVVFSDF 301

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N        +    +A V N   HG R   A++  + G    EL    G  T+  
Sbjct: 302 IHKYPNNRTLQTRLRTHFKRANVSNIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSM 361

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVDS 345
               Y+  +       K      + ++S
Sbjct: 362 TMDIYSHLS--KENAKKAVSFFETAINS 387


>gi|66395974|ref|YP_240335.1| ORF009 [Staphylococcus phage ROSA]
 gi|148266744|ref|YP_001245687.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392785|ref|YP_001315460.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151220475|ref|YP_001331297.1| integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|258447180|ref|ZP_05695330.1| phage integrase [Staphylococcus aureus A6300]
 gi|258448638|ref|ZP_05696751.1| phage integrase [Staphylococcus aureus A6224]
 gi|62636394|gb|AAX91505.1| ORF009 [Staphylococcus phage ROSA]
 gi|104641918|gb|ABF73226.1| integrase [Staphylococcus aureus phage phiNM4]
 gi|147739813|gb|ABQ48111.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945237|gb|ABR51173.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373275|dbj|BAF66535.1| integrase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257854193|gb|EEV77146.1| phage integrase [Staphylococcus aureus A6300]
 gi|257858269|gb|EEV81157.1| phage integrase [Staphylococcus aureus A6224]
 gi|269939840|emb|CBI48210.1| phage integrase [Staphylococcus aureus subsp. aureus TW20]
          Length = 401

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/398 (11%), Positives = 116/398 (29%), Gaps = 69/398 (17%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K + ++   K  YY +         +R+   L    + +   A          K    +S
Sbjct: 5   KFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEEKIKEKLNNKSS 64

Query: 64  PRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              K  T   L+ E+ +         V +  + ++    I + S  +    KI TK++++
Sbjct: 65  SELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQT 124

Query: 122 GVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP-------- 164
            +      ++ +   + L  M+         + +       ++      +          
Sbjct: 125 FINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEA 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K           +      +  +   + R+    A E    +G+R  +     V+ +   
Sbjct: 185 KMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLK 244

Query: 221 IFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE--- 253
             +I    T   I      G                           +L    + +    
Sbjct: 245 NKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPS 304

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F       M  ++ +    + A    +NK  + H +R    ++ A+   +   
Sbjct: 305 YVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKA 364

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +M   G +      + YT   +  ++  +  +++  +V
Sbjct: 365 IMKRVGHRDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|315173579|gb|EFU17596.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1346]
          Length = 378

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 104/370 (28%), Gaps = 51/370 (13%)

Query: 18  HGKIIYYFRKGH-----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +GK  Y+ R         RR+ +   +  +      + +         +    ++  +L+
Sbjct: 8   NGKFKYFERYKDPYTEKYRRVSVTL-NSKSNQAKKQAMMELQDKINNRMEKKDQQKVSLE 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS 131
            L++ + +     S+   S  ++      I      D   R   TK  +  +    H+  
Sbjct: 67  NLLNSWWQQHQL-SIRKTSVKAYGKILKYIFSNMNVDVLIRNTDTKFFQDFINDLPHSWE 125

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------Q 181
              +F + + + F +A     +  NP   V+  K           E              
Sbjct: 126 YKKKFKSVLNMSFTYAQDMGMIDENPINRVKVVKPPLTKENFENIESKYLEEKEVYQLLN 185

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------------- 222
           +     +        EF+  +GLR  ++    +     N                     
Sbjct: 186 YYYSTFQSVHHGRLAEFMYLTGLRAGEAISLTINDYVKNEHAILVNGTLDYSSGYKNATK 245

Query: 223 -------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
                  S +  +        + +  ++            F+    + +    F+   K 
Sbjct: 246 ELPKTLASFRKVELSNRAVKIIEELILEREIKFKEQTNYLFVGKTGKPIQVNSFNASLKK 305

Query: 276 KATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
                G NK     S+H  R    ++ A+       +M   G    +   + YT    + 
Sbjct: 306 ANESLGKNKINKTISSHIFRHSHISLLAELNVPVKAIMERVGHVDTETTLKIYTHVTKKA 365

Query: 330 RL-GIKNSRR 338
           +   ++   +
Sbjct: 366 KTNLVEALNK 375


>gi|296171015|ref|ZP_06852499.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894411|gb|EFG74159.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 379

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 92/354 (25%), Gaps = 34/354 (9%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPA-----YMSALTGSTPKREYINSPRKKPTTLKWLI 75
               +    GRR + P    +            + +          ++      T     
Sbjct: 25  YRARYYGPDGRRYKAPTLFLTKRDARSWLSLRQAEIVARAWMPPGADAEPAPKLTFTEYA 84

Query: 76  SEYRKSAHW--GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES-RKHTPS 131
           +++  +       L   +R  +     + I    G      IT   +R+   +     P+
Sbjct: 85  TQWLATRQVGGRPLKDRTREHYRKLLDEHIEPTFGLLPIASITADDVRAWYAATLTDKPT 144

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                   +R +   A     V  NPC+ +          +       +      +  +Q
Sbjct: 145 MRSHAYGLLRTIMATAASDGKVGANPCV-IRGAGTAKRVHKVKPATVSEIGVIADAMPAQ 203

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------ITV 235
             L      +  +R  +      + +      ++ ++                      V
Sbjct: 204 WSLMVLLAAWLAMRFGELTELRRKDIDLTDEVVRVRRAVVRTDDGFVVTTPKSDAGVRDV 263

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-NKSAHG 288
            +P   +  +            +                    F     +A   +   H 
Sbjct: 264 AIPPHLIPAIEAHLSKHVGAKSDALLFPAVGGGHLAPATLYRRFYTARAEADRNDLRWHD 323

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
           +R   A ++A  GAT  ELMA  G  T   A  Y   A  R R       ++++
Sbjct: 324 LRHSGAVLAAATGATLAELMARLGHSTPAAAMRYQHAAQGRDREIAALLSKLAA 377


>gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 293

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 79/269 (29%), Gaps = 27/269 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSGVESRKHT----PS 131
            L   +   + S     +    +              ++T + I    E  + T    PS
Sbjct: 14  DLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYREHMQVTRLLKPS 73

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189
           +  + + S++  F WA ++  V  N   S++    +    +  + ++         +   
Sbjct: 74  TINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAALMYAVEKYGT 133

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
            + R    F+L++GLR  + C   ++ +          +++ K      V L       L
Sbjct: 134 LRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQREVPLNSTARCAL 193

Query: 246 AMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                  E                         +     A +   SAH +R     + A+
Sbjct: 194 EEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSAHDLRHRFGYVMAE 253

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
                H L    G   ++    Y +    
Sbjct: 254 R-TPLHRLAQIMGHDNLNTTMIYVRATQE 281


>gi|91210294|ref|YP_540280.1| prophage lambda integrase [Escherichia coli UTI89]
 gi|117623322|ref|YP_852235.1| prophage lambda integrase [Escherichia coli APEC O1]
 gi|218558019|ref|YP_002390932.1| phage integrase [Escherichia coli S88]
 gi|237706877|ref|ZP_04537358.1| prophage lambda integrase [Escherichia sp. 3_2_53FAA]
 gi|306814013|ref|ZP_07448186.1| phage integrase [Escherichia coli NC101]
 gi|331646397|ref|ZP_08347500.1| integrase [Escherichia coli M605]
 gi|91071868|gb|ABE06749.1| prophage lambda integrase [Escherichia coli UTI89]
 gi|115512446|gb|ABJ00521.1| prophage lambda integrase [Escherichia coli APEC O1]
 gi|218364788|emb|CAR02478.1| phage integrase [Escherichia coli S88]
 gi|222032889|emb|CAP75629.1| integrase of prophageCP-933X(Intergra se) [Escherichia coli LF82]
 gi|226898087|gb|EEH84346.1| prophage lambda integrase [Escherichia sp. 3_2_53FAA]
 gi|281178247|dbj|BAI54577.1| phage integrase [Escherichia coli SE15]
 gi|294489975|gb|ADE88731.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|305852650|gb|EFM53098.1| phage integrase [Escherichia coli NC101]
 gi|307627391|gb|ADN71695.1| phage integrase [Escherichia coli UM146]
 gi|312945699|gb|ADR26526.1| phage integrase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315287466|gb|EFU46877.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323953176|gb|EGB49042.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H252]
 gi|323957964|gb|EGB53676.1| bacteriophage lambda integrase domain-containing protein
           [Escherichia coli H263]
 gi|324005344|gb|EGB74563.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
 gi|330910951|gb|EGH39461.1| prophage lambda integrase [Escherichia coli AA86]
 gi|331045149|gb|EGI17276.1| integrase [Escherichia coli M605]
          Length = 380

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 100/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7]
          Length = 407

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 82/299 (27%), Gaps = 24/299 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL      + ++       +  V S  ++ + +  I R         D  +  +    I 
Sbjct: 108 TLLGYFRRFIRNFEKRVGINRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFID 167

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                    R   P + I     ++ +   A+    +  +P +  E P R     +  T 
Sbjct: 168 KYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKYLTA 226

Query: 177 EDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
           E++ +  +           R  F F  ++G+   D       +L    +           
Sbjct: 227 EELHRIMTTPLHRQPLYHVRDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQK 286

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        L +      T   +        +  +++ K  A    +++    H  
Sbjct: 287 TKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCNSTLNLYLKEIARICHIDRPLVFHAG 346

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           R   AT      G     +    G   ++  + Y K  D         + ++  +    
Sbjct: 347 RHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKIDADT--KALNRKISERF 403


>gi|26247388|ref|NP_753428.1| prophage lambda integrase [Escherichia coli CFT073]
 gi|227886506|ref|ZP_04004311.1| prophage lambda integrase [Escherichia coli 83972]
 gi|300938713|ref|ZP_07153437.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|300975603|ref|ZP_07173082.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|300982378|ref|ZP_07176076.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|301046483|ref|ZP_07193636.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|26107789|gb|AAN79988.1|AE016759_262 Prophage lambda integrase [Escherichia coli CFT073]
 gi|227836710|gb|EEJ47176.1| prophage lambda integrase [Escherichia coli 83972]
 gi|300301503|gb|EFJ57888.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300307215|gb|EFJ61735.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|300410266|gb|EFJ93804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 45-1]
 gi|300456358|gb|EFK19851.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|307553138|gb|ADN45913.1| prophage lambda integrase [Escherichia coli ABU 83972]
 gi|315293095|gb|EFU52447.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
          Length = 380

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 100/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEPGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 411

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 85/283 (30%), Gaps = 30/283 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             A  +   +++   ++           D  + ++T + I++     K       ++ ++
Sbjct: 128 DYAPVTINRYKNVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           ++   + +   A+ + ++  +     +  ++        T +++Q   +      +    
Sbjct: 188 YMKCFKKITNMALAKGWMKKDAFYGYKM-EQDETDPVFLTYDELQTVMNKEFTIPRLVLV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----------F 241
           R  F F  ++GL  +D      + L  +       + G I  +                 
Sbjct: 247 RDIFIFACFTGLAFADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSICNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + +L                      + + + K  A   G+ K  + H  R    T    
Sbjct: 307 LAILKKYENNPVCIKKGCCLPVPCNQKMNSYLKEIADFCGIKKNITTHAGRHTFGTTITL 366

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
                  ++    G  +    + Y +   A   +  +   +R+
Sbjct: 367 ANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMLNVKKRL 409


>gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
          Length = 423

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 93/290 (32%), Gaps = 25/290 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VES 125
            E  K    G  ++++   +      +           D   ++++   I          
Sbjct: 118 DEMEKQYKAGMKSLSTYTKYRIGCAYVGEFLQTHYHVKDIALKELSLPFITDYETFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    +SA+ F+ ++R +   A+  E++  +P    E  + +T      +KE++      
Sbjct: 178 KHLKINSAMVFVRNLRAMVFRAIDNEWLVKDPFRRYEYKEEETT-REFLSKEEIHLLMET 236

Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                  S  R  F F  ++GL   D      ++++      +             +  +
Sbjct: 237 PITRKKMSMVRDLFLFCCFTGLAFIDLYNLKEENIKEFFDEGEWIVIH--RQKTGTEANI 294

Query: 243 KLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           KLL       E +    +  +     N        K    K G+    S H  R   AT 
Sbjct: 295 KLLDYPKQIMEKYRGLCEDGRVFPVPNYQSCMDSLKRLGKKCGITKPLSWHMSRHSFATS 354

Query: 297 -SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
                G     + +  G K +   + Y K   + +L      ++S  +++
Sbjct: 355 VCLSNGVPIETVSSMLGHKDIKTTQVYAKIT-KEKLSKD-VEKLSQQINN 402


>gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 407

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 27/295 (9%)

Query: 74  LISEYRKSAH-WGSL-----AVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRS 121
           L+  +RK       L     +  +   ++  + ++           D   ++I    I  
Sbjct: 110 LLELFRKHNDDAQKLVGISKSAATLAKYDRCYRRMEEFMKAKYNITDIALKEINHMFITD 169

Query: 122 GVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +       ++  +F+ + R++   A    ++  +P ++ +  + K       T  
Sbjct: 170 FETYLRTVSLCNENTTAKFMQTFRMIVIMAKNNGWIFTDPFVNYK-IRLKRVDRGYLTDA 228

Query: 178 DMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++Q+         +    R  F F  ++GL   D        +  +             T
Sbjct: 229 ELQKIMKKKFPTKRLEQVRDVFIFSCFTGLAYIDLKTLKASEISISFDGKPWIMKHRQKT 288

Query: 235 VELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
               +  +    LA+    +           ++  + + + K      G+NK  + H  R
Sbjct: 289 DTPVNVPLLKIPLAILKKYEGQLPKGELLPVLSNQKLNSYLKEIGDLCGINKNITFHFAR 348

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              AT +    G     +    G   ++  + Y +  +         ++++  +D
Sbjct: 349 HTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKD--MQQLAGKLD 401


>gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 322

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 85/271 (31%), Gaps = 31/271 (11%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVE---SRKHTPSSAIQFLTSMRV 142
             +R ++E+     ++ +G     +       H+ +  +    R  +  +    L ++  
Sbjct: 41  KATRRAYENALGDFMKFTGIVKPEEFRTVIRAHVIAWRDDLVQRALSGMTVRHRLAALSS 100

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAF 196
           LF+    +  V  NP   V+RP  ++   +     D Q  K          +G + R   
Sbjct: 101 LFESLCEKNAVTHNPVKGVKRPPVESYEGKTPALGDHQARKLLDAPDGASLKGKRDRAIL 160

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMT---- 248
             LLY  LR  + CR  V+  ++    +   K       I  V L      L+       
Sbjct: 161 ATLLYHALRRDELCRLTVKDYKHERRGVPHLKVFGKGGKIRYVPLHPAAGGLIGDYLEIA 220

Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297
                         +        ++ +         +  +T  G    AH +R  +AT +
Sbjct: 221 GHGADDAGALFRPLRNNCTTGGLERAITPDAVYKLVRQYSTALGFAIGAHALRATAATNA 280

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            D  A   ++    G   +     Y     R
Sbjct: 281 LDHQADIAKVQEWLGHANIATTRIYDHRKTR 311


>gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 382

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 101/357 (28%), Gaps = 57/357 (15%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +R R+  I +   +R   G+              A+      +  + E+++ P+    T+
Sbjct: 4   KRVRNTGISWQGRYRDASGKEHS-KTFRTKREAKAWEDDQIRAVRRGEWLD-PQTSTITV 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR-- 126
             L+ +        S   N+R +     + ++   GD        +    +RS +     
Sbjct: 62  HDLVKK----KLSQSAKPNTRQAR----NYLLANLGDLSPIPITALRPAMVRSWLHVLET 113

Query: 127 ------KHTPSSAIQF------LTSMRV-------LFKWAVRQEYVAINPCLSVERPKRK 167
                   +P +A         L ++         + +  +R   ++             
Sbjct: 114 GRPWVPNRSPLAANTISMIAGQLRAILTQAVNDDVILRHPMRGVVISSASKQVERDDIPD 173

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
           TE I+   +      +         R+       +GLR  +     V+ +      +   
Sbjct: 174 TEEIQALIQAAYSSGRGVSPNPQLARMIIVA-ATTGLRGGEIGGLRVKDVDFFRRELHVS 232

Query: 228 KT--------------GTIITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQ 268
           +                   TV L +  +  L      +              +  N+  
Sbjct: 233 QQVSQNNAGPTAPKSRRASRTVPLTEETLAALNTQLRERPRGREETIFAAKSGEPYNSLA 292

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
               FK    + GV  + H +R + A+   ++G +   +    G  +       Y  
Sbjct: 293 IGTQFKNLTKRVGVTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAH 349


>gi|86742073|ref|YP_482473.1| phage integrase [Frankia sp. CcI3]
 gi|86568935|gb|ABD12744.1| phage integrase [Frankia sp. CcI3]
          Length = 380

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 85/337 (25%), Gaps = 34/337 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLI 75
           +  +   ++R   G R  +     S         L      R  +      P TT+K L 
Sbjct: 21  KGSRARCFYRDHDGVRREVERGGTSKAAATRALKLALRDRLRVAVGDGDITPETTMKVLG 80

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132
             +         + N+  ++ +     +    G    R++T         +      P +
Sbjct: 81  EAWFAEQQKKDRSPNTLAAYRTTLDRHVYPALGGVKARQVTVGTADRFFSAVTTKSGPGA 140

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGS 190
           A    T +  +   A R + +  N      +  R       +      ++Q ++  +   
Sbjct: 141 ARIARTVLSGMCAMAARLDAMDRNVVRDAGQITRPEPKPVSKALGAAQLRQLRALLTYDE 200

Query: 191 QPRLAFEFLL-----YSGLRCSDSCRAGVQHLQ----------NNIFSIKTQKTGTIITV 235
           + R      L      +G R  + C      +             +              
Sbjct: 201 RARRRDIPDLVDMLIATGARIGEVCGIVWDAVDLDAGTVEIRSTVVRITGQGLINKPRPK 260

Query: 236 ELPDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVN- 283
                 + LL    +       +                 + +      +     AG   
Sbjct: 261 SKAGHRLLLLPAWAVAMLRTRHHGQNSDEVVFPAQMGGLRDPSNTQADIRDAVNDAGFPG 320

Query: 284 KSAHGV-RKFSATISADAGATAHELMATYGWKTVDQA 319
            ++H   R+  AT+    G T  ++    G       
Sbjct: 321 LTSHLFGRRSVATLLDGDGHTPRQIADVLGHANPSIT 357


>gi|45358035|ref|NP_987592.1| integrase/recombinase [Methanococcus maripaludis S2]
 gi|44920792|emb|CAF30028.1| Probable integrase/recombinase [Methanococcus maripaludis S2]
          Length = 328

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVE----SR 126
            IS +R+   +  +  N+ I   +     +  +    + +  ++               R
Sbjct: 26  WISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNYLEKER 85

Query: 127 KHTPSSAIQFLTSMRVLFK---------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           K + ++  ++   ++V ++         +              +E         +     
Sbjct: 86  KISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLV 145

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235
             + F++  S   +  +    L  +G R S+      +         +    K+     V
Sbjct: 146 IAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKV 205

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN----------ATQFSIWFKAKATKAGVNKS 285
                 ++LL             +   +              Q +  F     K    + 
Sbjct: 206 VCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEK 265

Query: 286 A--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                    H +R   A    + G     +    G ++++    Y+    R    +++ +
Sbjct: 266 IQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQDIK 325

Query: 338 RI 339
           ++
Sbjct: 326 KL 327


>gi|238062904|ref|ZP_04607613.1| integrase [Micromonospora sp. ATCC 39149]
 gi|237884715|gb|EEP73543.1| integrase [Micromonospora sp. ATCC 39149]
          Length = 395

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 100/346 (28%), Gaps = 48/346 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           ++G +        G+++ +   YP +++   A +            +  PR    TL   
Sbjct: 8   KNGPVYRIRDLVRGKKVTIQTGYPTKTSAKNAMVQFRAEQLQGNALM--PRGGQITLADF 65

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           + E+  S    +L   +  S  +     ++   G     ++  +  +  V   +      
Sbjct: 66  VGEWWPSYE-KTLKPTAVNSEGNRIRNHLLPILGHLTLDELDGQVTQQWVNDLEAGVGPW 124

Query: 130 ------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                         +       +  +   A+  + + +NPC S   P+R+ + ++  +  
Sbjct: 125 PESTRGRRKPLAAKTISNCHGLLHTICGAAIAAKRIRLNPCSSTMLPRREPKEMKFLSDP 184

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
           ++ +  +      +P +     + +GLR  ++       +       +            
Sbjct: 185 EIGRLITALPPHWRPLVMLL--VATGLRWGEAIGLRAGRVDLLAARPRLTVVEQLQELAS 242

Query: 226 -------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFK 274
                  + KT            + LL    I  +                   F   + 
Sbjct: 243 TGELVFQSPKTAKGRRTVSFTTKVALLLTPLIAGKKSDEVVFTAPKGGMVRTRNFRRIWV 302

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +AG+     H +R   A I   AG     +    G  ++   
Sbjct: 303 KACEEAGLPGLRIHDLRHTHAAILISAGRPLSAISRRLGHSSIAVT 348


>gi|320201033|gb|EFW75617.1| Integrase [Escherichia coli EC4100B]
          Length = 380

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 101/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F+S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 29/281 (10%)

Query: 68  PTTLKWLISEYRKSAHW----------------GSLAVNSRISFESYFDQIIRKSGDFDY 111
           P T + L   Y  ++                    +A +++   +     +       D+
Sbjct: 87  PFTFERL-ERYLNNSESGTTNSFLSFMEKRIYERQVADSTKQRQKCVLKALKEFGRIKDF 145

Query: 112 RKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             I  ++IR+  E    R    SS   +   ++V  + A     ++ NP  + +  + K 
Sbjct: 146 TDICDENIRAYDEFAKKRCKCQSSVYNYHKILKVFVREAYAAHLISENPYQNFKLDRGKR 205

Query: 169 EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSD-SCRAGVQHLQNNIFSI 224
              +  TKE++ + ++   +     + R  F F  Y+GL  +D +       +  +    
Sbjct: 206 VARKFLTKEELAKLETKQIDDMCLNRVRDLFLFCCYTGLAYADLAIFNFKDAIMTDGMYR 265

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              +     T        K++ +    +    + ++++  +  +    F     K     
Sbjct: 266 IRDERIKTGTPYNISLMDKVMNILKKYEFKLPVISNQKYNSYLKILGAFCEIKKKL---- 321

Query: 285 SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTK 324
           ++H  R   AT  +   G     +    G   +   + Y  
Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAH 362


>gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13]
 gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13]
          Length = 419

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT 129
            +Y K    G  A  + + +++ +  +           D   +++T   I       +  
Sbjct: 126 EDYEKQVDAGMKAKGTLLKYKTVYKHLQEFLTIRYRVKDIALKELTPAFISDFEMFLRTD 185

Query: 130 PS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +   ++  +R +   A+  E++  +P    E  K++       TKE+++     
Sbjct: 186 KYCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKEEIRLLMDG 244

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      +++       +        T  + +  +
Sbjct: 245 RLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIHTYFDEHEWININRQKTGVVSNIRL 304

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      N +        +     ++ A + G+ K  + H  R  +AT   
Sbjct: 305 LDIAKRIIDKYRGLCGNGRIFPVPHYNTCLAGIRSVAKRCGITKHITWHQSRHTAATTVF 364

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 365 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 396


>gi|194446257|ref|YP_002041137.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404920|gb|ACF65142.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 359

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 104/357 (29%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP ++T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRYLT-YRKASKSFFWR-NPVTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       SL+VN+     +    +  K G+    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 VTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +     +   LA +  L +G R  D        + +N   +   KTG 
Sbjct: 179 RLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GVN      + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KASGVNFSNNPPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503]
 gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503]
          Length = 411

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 90/292 (30%), Gaps = 30/292 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ +         +  + ++T + I +     K     
Sbjct: 121 METLAGIDYSPVTINRYKNVVKKLQQFIPSYYGKEEVTFHELTPEFIHAFDIYLKTEGRL 180

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 181 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 239

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             +    R  F F  ++GL  SD      +HL  +     +  K +              
Sbjct: 240 IPRLELVRDIFVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISN 299

Query: 242 M-------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           +        +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 300 IPLLPVPLAILEKYREHPACIKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 359

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RISS 341
             T           ++    G  +    + Y +  +  ++  + N + R+S 
Sbjct: 360 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKAAMNNVKERLSQ 411


>gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
 gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755]
          Length = 124

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
                 KE  F      K +        K  A KA +    + H +R   AT   +AG  
Sbjct: 30  YKKWKPKEYLFEGQRGGKYSGQAVVNVVKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVD 89

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
             ++    G ++    E YT  A
Sbjct: 90  LRQIQVLLGHQSTKTTEIYTHVA 112


>gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217]
 gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217]
          Length = 313

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 87/299 (29%), Gaps = 37/299 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVE 124
             + +Y         + +S  ++   F  + + +              ++    I + ++
Sbjct: 10  QFMQDYL--PRQRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLD 67

Query: 125 S----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKE 177
                R +  +S    L +++   ++   Q    +     +     K    +     +K+
Sbjct: 68  HLETDRGNGATSRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKD 127

Query: 178 DMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGT 231
           ++Q   +        G++ R         GLR S+   A      L      +   K   
Sbjct: 128 EVQAVLNAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRK 187

Query: 232 IITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKA------ 280
                L       L               F+N + + M  + F         KA      
Sbjct: 188 HRHFPLWKQTASDLRAWLAVRGLTPAPEIFVNAEGRAMTRSGFEYVLDKHVVKASQHCPS 247

Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
             G + S H +R   A I  +A     ++    G   +   ETY +  A +    ++  
Sbjct: 248 LAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAV 306


>gi|315150954|gb|EFT94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0012]
          Length = 372

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 113/377 (29%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +  ++  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKESTFKTNTGIIENHLSIFNEVQINAIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKT 226
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 227 QKTGTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ------- 268
                                      + L +  I +E           +          
Sbjct: 237 MLVKNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKST 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|256844387|ref|ZP_05549873.1| phage integrase [Lactobacillus crispatus 125-2-CHN]
 gi|256613465|gb|EEU18668.1| phage integrase [Lactobacillus crispatus 125-2-CHN]
          Length = 412

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 59/366 (16%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTG 53
             R P  V +   ++GK  Y    G           GRR  L +P  S +  AY  A   
Sbjct: 2   KTRYP-NVYQ--DKNGKYFYQIFVGTDANGKKKLKKGRRDALKHPFSSAY-QAYKEAQR- 56

Query: 54  STPKREYINSPRKKPTTLKWLI-SEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDY 111
               +    +      +    +   Y     +   +  ++  +      + +   G+   
Sbjct: 57  ---VQALYANVSADNISYASFMKDRYL--PKYRGDVEASTYDTHNLMMLKGVDFLGEIKL 111

Query: 112 RKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           + I                  + + A    T+ R    +AV    +A NP L  +   + 
Sbjct: 112 KDIKVIDCEKYRTWLLTDSGFSRNYASVIYTAFRQSLDYAVEIGLIASNPSLKTKSIPKG 171

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
                 WT  + ++  +  +  +       + F F    G R ++        +      
Sbjct: 172 RNIENYWTMPEFEKVLASINTDTFYEELIYVTFLFYYRIGCRVNEGFALRWSDIDLINGK 231

Query: 224 IKTQKTGT------------------IITVELPDGFMKLLAMTP-----IGKETFFINND 260
           ++                          TV +    +++L              F  + D
Sbjct: 232 VRFINNLHYSSKLNYELVPYLKNDASRRTVTIDAELLEVLKKWKKEQAKYNIHDFVFSCD 291

Query: 261 KQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316
              +N +  S+W K  +  AG   +N    G+R  +A+   A+ GA    +    G KT 
Sbjct: 292 NCPLNKSTLSVWLKRYSKLAGVSRINGR--GLRHSNASYLIAELGADVLTVSHRLGHKTP 349

Query: 317 DQAETY 322
                Y
Sbjct: 350 MTTLKY 355


>gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
 gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium
           saphenum ATCC 49989]
          Length = 324

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 81/285 (28%), Gaps = 25/285 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              R    TL  +   +     +  ++  +  +  + +     +         T   ++ 
Sbjct: 26  RRIRSSEPTLGTVFRAWLDLKRF-EISEGTVKNILARWRNNYARYATRPVASFTAPELQQ 84

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---- 177
              +            + +R +FK A R  +++ +P  ++  PK +              
Sbjct: 85  ITLTLAKRYVDIKHPFSVLRNIFKHAKRLGFISTDPTANLMVPKPRRRAPTNNYYTKEEL 144

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV---------------QHLQNNIF 222
           D     +      Q  + F  L ++GLR  ++                      L  +  
Sbjct: 145 DKFLRLAKEQLPHQWYVFFYLLAHTGLRRGEALALKWIDLSRDSLLVRRTLSATLTGHAI 204

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           S   + + +   V +      LL       E  F N     + ++Q   W        G+
Sbjct: 205 SDTAKTSASHRRVYIDSDVYNLLISLFSSSEFIFSNTKGGCITSSQPIRWLHKIK---GI 261

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              S HG R    ++   AG     +    G   +    + Y   
Sbjct: 262 RYISPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHV 306


>gi|296112023|ref|YP_003622405.1| integrase [Leuconostoc kimchii IMSNU 11154]
 gi|295833555|gb|ADG41436.1| integrase [Leuconostoc kimchii IMSNU 11154]
          Length = 351

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 97/332 (29%), Gaps = 18/332 (5%)

Query: 28  GHGRRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            +G+R+R       T   A Y +         + +++      T+     ++ ++   G+
Sbjct: 19  KNGKRVRKTKSGFKTKRDANYWANDIEHRKNNDELSAVFAPDITVPEYFGKWLETYK-GN 77

Query: 87  LAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
           +  +S   + +    I            K+T    +  +     T   S+  +  T ++ 
Sbjct: 78  IKSSSMTVYLATLHTIERSDILSTTKAFKLTRARAQQYLNEFGSTHIRSTTAKRKTQLKS 137

Query: 143 LFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            ++ AV   ++ +NP           +  +     T + +          +         
Sbjct: 138 AYQDAVLDGFIKVNPFERTIVTGSDPKDNDLKFLETDDYLLLINETKLVPTVNNDIILIG 197

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETF 255
             +G R  +        +++ +  I   +     T++       +    + +    +   
Sbjct: 198 ALTGARIGEILALTTDDIKDGVIDINKTEQSATRTIDTTKTKSSVRLIDVPVWLTDRLNS 257

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGW 313
                   ++    +  FK   TK       S HG+R   A+       +   +    G 
Sbjct: 258 SYQGRLFNISQGAVNKAFKKLQTKLEFKNIVSFHGLRHTHASYLLSKDVSIDYVSQRLGH 317

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
                    Y       RL  +   +  S+ D
Sbjct: 318 ANTAITMKVYAHLLSSKRL--QEIDKTISLFD 347


>gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817]
          Length = 325

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 100/332 (30%), Gaps = 48/332 (14%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD- 108
            +     + +     +++    K +   Y         +  +   +  Y    ++   + 
Sbjct: 3   IIKREETRLDTPRRKKREKENRKSIFETY--------RSQKTIKDYLFYLKDFLQYIYEG 54

Query: 109 ---------FDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
                       + I  + +       +E RK   +S  + +++++ L+K   +  Y   
Sbjct: 55  ENIRADELIDLMKDIEKQDVEDYLSHLIEDRKMKKTSVNKVISALKSLYKEMEKNGYPNP 114

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211
              + + +  R  + +   + ED+++    ++       +       L Y+G+R S+   
Sbjct: 115 FKYVELFKVSRNIDNVLKLSAEDIKKIIGQYTIKGEKEYRNITILYTLFYTGMRSSELIN 174

Query: 212 AGVQHLQNNIFSIKTQ--------KTGTIITVELPDGFMKLLAMTPIG-----------K 252
              +HL N   +   +        +    I   L +  ++      +             
Sbjct: 175 LKFKHLLNREGNYFIKLEETKSGKEQYKSIYPTLVEKLLEYKKYKQMFFSISDENIEEQY 234

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
                     K++        +      G + S H +R   AT  +  GA   E+    G
Sbjct: 235 IFNSSIEKNTKLSYRTLYDIIQNFGKIIGKDISPHNIRHAVATELSLNGADILEIRDFLG 294

Query: 313 WKTVDQAETY--TKGADRIRLGIKNSRRISSV 342
                  E Y   K     R+ ++    +  +
Sbjct: 295 HSDTRVTEIYINAKSVLEKRV-LEKLPDLEKL 325


>gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4]
 gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4]
          Length = 272

 Score = 90.2 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 80/266 (30%), Gaps = 7/266 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            + ++  +   G     +  +  ++  ++ R  G     ++    +      +  +  + 
Sbjct: 12  YLDDFATALRAGGAPETTIGTRLNHLRRVARTFGAPSPLEVDGDQLTLWAGRQDWSIETR 71

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +  S+   ++W V       NP  ++  P+      +P    D     +      + R
Sbjct: 72  RGYRGSLLAFYRWMVGSGRATENPAAAL--PRVAPAKPKPRPAPDSVYATALMKATPRER 129

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GK 252
           +        GLR ++      + L  ++        G      +     ++ A      +
Sbjct: 130 VMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKDRVLPLPDEIAAELRRLPR 189

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              F  ND   ++                 + + H +R   AT +         +    G
Sbjct: 190 GWAFPGNDCGHLSPRWVGKLMTELLPD---DWTMHKLRHRFATRAYRNTRNIRAVQQLLG 246

Query: 313 WKTVDQAETYTKG-ADRIRLGIKNSR 337
            ++V   + YT    D +R  +  + 
Sbjct: 247 HESVATTQVYTAVDDDELRAAMNAAA 272


>gi|315641378|ref|ZP_07896453.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
 gi|315482871|gb|EFU73392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952]
          Length = 316

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 85/282 (30%), Gaps = 24/282 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
                +E+ +    G++   +   ++     +     D   + +  K  +S +     T 
Sbjct: 19  FYEYYAEWIELYKVGAVRDVTLAKYKMSLKWVRELVPDLFLQDLDRKSYQSLLNQYAMTH 78

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + + F   ++   + A+ +  +  +P   V    +     +          K   S 
Sbjct: 79  EKQTTLDFHHQLKGALRDALDERIIISDPTRKVVIKGKTPRPKKDKYLNQFDLQKLLDSL 138

Query: 189 GSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
               +++F++L+     +GLR S++     +       +I   KT               
Sbjct: 139 ELTEQVSFDWLILLIAKTGLRFSEALALTPEDFNFFNQTISVTKTWNYKTNEGGFMGTKN 198

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
                 V +        A              K+++  +  +   +    K G+   + H
Sbjct: 199 ASSKRHVSIDWKTGMQFAQLIKDLPDNEPIFVKERVFNSTVNNLLRRCCKKTGIPIITVH 258

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           G+R   A++   AG +   +    G   +    + Y      
Sbjct: 259 GLRHTHASLLLFAGVSIASVARRLGHANMTTTQQIYLHIIQE 300


>gi|217966206|ref|YP_002351884.1| integrase [Listeria monocytogenes HCC23]
 gi|217335476|gb|ACK41270.1| integrase [Listeria monocytogenes HCC23]
 gi|307572184|emb|CAR85363.1| phage-associated integrase, putative [Listeria monocytogenes L99]
          Length = 397

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 111/375 (29%), Gaps = 61/375 (16%)

Query: 11  VTKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +    T+ G+  +Y           + I        T + A ++A        E      
Sbjct: 4   IQSYITKSGERFFYQIYEGVDPKTRKPIFKKKRGFLTELDARLAAKNYEDNAGEEKKIVD 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124
               T   + +E+ K      L +++  ++ES F   I+   G +  + IT K  ++ + 
Sbjct: 64  YSKLTFLDVYNEWWK-LTSIGLKISTVATYESLFKNHILPVLGMWSIQSITKKDAQTFIT 122

Query: 125 SRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------- 167
                        + S+          +FK+A   +YV  N    V  P+          
Sbjct: 123 DLMALVNDPDIELSRSTVQNIKIKTAQVFKYATEMDYVDKNAFEFVVVPRSFDDLYAMDD 182

Query: 168 -TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI--- 221
             +    W ++++    +++ E  +  +   F L  +SG R  +     +  +  +    
Sbjct: 183 EEQQRDFWYRDELLTMLNYFKEECENNVYMLFRLLVFSGARKGEILALKISDVNFDRSGI 242

Query: 222 -----------FSIKTQKTGTIITVELPDGFMKLLAMT-----------------PIGKE 253
                      + +   K      + L D  +  L                         
Sbjct: 243 HIRKTLFYKKGYHLLKTKNYKTRFIPLDDITIHELNKHIANLIDTTKILAAENIKFNNDN 302

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATY 311
             F  ++ +       +        K    +    H  R   A+     G  A ++ A  
Sbjct: 303 FLFPRSNGEPQRLAMPNDELNKLYKKHPDLLKLKIHSFRHSYASALFAEGKPAKKVQALL 362

Query: 312 GWKTVDQAE-TYTKG 325
           G K++ +   TYT  
Sbjct: 363 GHKSIKETMDTYTHV 377


>gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus
           thermodenitrificans NG80-2]
          Length = 304

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 86/303 (28%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           ++EY         + N+ IS+ +  +             +T+  IR  ++          
Sbjct: 2   LNEYVDYLREKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKWIQQMLNPIEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV    +  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADEDYEKIMWLTEEEFEDLLH 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans]
          Length = 368

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 69/337 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK----- 127
           +  +         + N+  ++                D+R++  +++   V   +     
Sbjct: 28  VERFLAYLTDVERSPNTLKAYAHDLKDWFVFLRHRGIDWRQVRLENVGEFVAWLRLPPAG 87

Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                           P +  + L ++   + +  R      +     E  + +  G RP
Sbjct: 88  RAADVTLLPSASHHCGPGTLNRKLAAVSGFYVFHSRHGVPLGDLVTEFETVRYRRTGWRP 147

Query: 174 WTKEDMQQFKSFW--------------------------SEGSQPRLAFEFLLYSGLRCS 207
           +                                          + R  F  L  SG+R  
Sbjct: 148 FLAHLAGDRPQRRRIVKLREPKRLPTVLPAATAQAVLDACTRLRDRFLFVLLWESGIRIG 207

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--------------------M 247
           ++     + +      +  ++              + +                      
Sbjct: 208 EALGLRHEDIAVAEGELTIRRRVNANRARAKSVSPRTIPIGADVVRLYGDYLHEEYGDLD 267

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +       +     + M         K      GV+   H  R   AT    AG     +
Sbjct: 268 SDYVFVNLWAGPRGRPMGYAAVYDLVKRLRRDTGVDFDPHWFRHTYATRLLRAGTPIEVI 327

Query: 308 MATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISSV 342
            +  G  +V    + Y     +  R   + +  ++  
Sbjct: 328 SSLLGHASVATTIDVYGHLTVEDARRAFEKAGLLTGK 364


>gi|330988384|gb|EGH86487.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 367

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 107/361 (29%), Gaps = 45/361 (12%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG 53
           M P  R      LPP + ++   R+G   Y +R     R+      +         A   
Sbjct: 1   MVPRPRNPGSKDLPPNLYRKTDKRNGHTYYTYRDPVTGRV-FGLGKDKAAAIMEAVAANH 59

Query: 54  STPKREYINSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +   +  +     +P      T    + EY        L+  +  S +S    +    G+
Sbjct: 60  ADVLKPTLAQRIAEPVAVDDRTFADWLGEYELIYTERGLSAQTTRSMKSRLKTVNSAFGE 119

Query: 109 FDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              R I T  I + + +      +  +  + + +R +F  A+   +  +NP  + + P R
Sbjct: 120 KFVRNIRTMDIATFLATFSKAGKAPMSKAYRSLLRDVFNEAIAAGWCDLNPVDATK-PAR 178

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                   + E  +   +        R A E  L +G R  D      +   +    +  
Sbjct: 179 SKVKRARLSLELWKAAHTATDRPWLKR-AMELALLTGQRRDDIGSMLFKDEHDGFLHVIQ 237

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNA-------------TQFS 270
            KTG  + +        +   L+          ++                        +
Sbjct: 238 SKTGARLRISTSLRLEAIGLDLSSVIKSCRDRVLSKHLVHHTRTVAVAKAGNPIKLNTLT 297

Query: 271 IWFKAKATK----AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + F     K     G++      S H +R  +A + A  G          G +     E 
Sbjct: 298 LAFAEARDKGAAALGIDLGANPPSFHEMRSLAARLHALEGRDP---QKLLGHRNAAMTEM 354

Query: 322 Y 322
           Y
Sbjct: 355 Y 355


>gi|307280594|ref|ZP_07561642.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306503960|gb|EFM73177.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
          Length = 393

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 109/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ G+  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGQKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKINQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----- 222
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINN 259
                          +   +I  +   +    +L    + +               F   
Sbjct: 247 KTTAISTSGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQCEALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|307286635|ref|ZP_07566725.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|306502264|gb|EFM71546.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0109]
 gi|315152696|gb|EFT96712.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecalis TX0031]
          Length = 387

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 103/374 (27%), Gaps = 59/374 (15%)

Query: 11  VTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           + + +   G   + ++         G  +R                  L     + E   
Sbjct: 4   IQQYKKSDGTTAWLYKVYMGKDPLTGKEKRTTRRGFKTKKEAS---LDLARFQIEIESTG 60

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121
                  T   L   +    H  ++   +    +++F +QI+   G      IT    + 
Sbjct: 61  ISHHSIKTFSELYDLWMD-QHVKNIRNTTEQRIKNHFTNQILPSFGKMRLEVITPAICQK 119

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKE 177
            +        S  +  +    +F + +    +  NP      PK            +TKE
Sbjct: 120 ILTEWSTKYHSYQKIKSYTSQVFNYGILIGVIKTNPMERTITPKSNHSFNEIEEEFYTKE 179

Query: 178 DMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI-------------- 221
           +++QF     E    R    F L  Y+G R  +      + +  +               
Sbjct: 180 ELRQFFDCLQELKDDRALTFFRLAAYTGARKGEILGLTWKDIDFDKKTVQFNKTLVELSD 239

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------- 269
                  T+   +  T+ + DG + +L           ++   +  N             
Sbjct: 240 GSLCVNPTKTESSKRTITIDDGTLTILKKWKRTVIKKNLSRGIRIDNIDDVPVISTIKAN 299

Query: 270 -----------SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      +      A K    K    HG RK  AT+  +AGA   ++    G  + 
Sbjct: 300 KKRDFLYKGYPNHVMSKVARKFPDMKIIKVHGFRKTHATLLFEAGAQVKDVQDRLGHSSS 359

Query: 317 DQAE-TYTKGADRI 329
                 Y + +   
Sbjct: 360 KTTMDIYIQVSKNR 373


>gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
 gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/264 (9%), Positives = 64/264 (24%), Gaps = 15/264 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH----TP 130
           E++        ++ +   +     Q +           K+  + I        +      
Sbjct: 7   EFQNYLLEQRKSIATINGYMQDIRQFVEYLTNHHKQINKLHNQDIEDYKNYLLYDEQLKV 66

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + L S+     +      +                              ++     
Sbjct: 67  KTVNRKLVSINQFLTFNNVAVTIRQEKVQMQNFLSNLLTN----EDVQKMINTTYKINDV 122

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + R     L Y+G+R S+  +  +  +     +IK + +                   P+
Sbjct: 123 RARTIINTLYYTGMRVSEMLQLTIYDINQPRINIKGKGSKFRTVFIPHKLLNTWAEYIPV 182

Query: 251 GKETFFINNDKQK--MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAH 305
                      ++  +N        K  A  + V      AH  R               
Sbjct: 183 RINKSDKLFTGERGAINRVTVDTILKKIARLSNVSLDKAHAHNFRHLYCKNLIKNDIDIS 242

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G  +++    YT+ ++  
Sbjct: 243 TVADLCGHSSINTTRLYTRLSENE 266


>gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139]
 gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139]
          Length = 183

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 78  PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 137

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 138 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 172


>gi|16803137|ref|NP_464622.1| hypothetical protein lmo1097 [Listeria monocytogenes EGD-e]
 gi|16410499|emb|CAC99175.1| lmo1097 [Listeria monocytogenes EGD-e]
          Length = 400

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 96/341 (28%), Gaps = 39/341 (11%)

Query: 14  ERTRHGKIIYY----FRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           ++ ++G   +     +     +  + R  +  +      Y   L  +             
Sbjct: 7   KKAKNGTYYFRANLGYDVKGKKIQKYRSGFKTKKEAREEYSRLLLMNPDDLNENKDKMMF 66

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
              +  +   + K+     + + +  +      +            I   +++       
Sbjct: 67  EYYINEIFLPWYKT----QVKLRTYENRIPTIQKHFPYFYKMAVSDIEPINVQDWQLKMT 122

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               PS          V    A+       NP   +   K+    +  WTKE+ ++  S 
Sbjct: 123 KNLKPSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKVKPKVEFWTKEEFEKVLSL 182

Query: 186 WSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN-----------------NIFSI 224
             +    +      L+    +G+R  ++     + +                   +   +
Sbjct: 183 IYKEDYYQNFLFISLWFLFMTGMRIGEATAIQWEDIDFETGVVSITKTLYYKSQIDYKFV 242

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATK 279
           + +   ++  + L    +  LA     ++      F ++ +         +      +  
Sbjct: 243 EPKTKASVRHIVLDKVTLSYLADWREVQQNVVKTNFVMSYNGIPTQKHTIAHAIDRFSKM 302

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           AG+++   H +R   A++    G     +    G + ++  
Sbjct: 303 AGIHRIKIHALRHSHASLLISMGENPLIIKERLGHEDIETT 343


>gi|330465462|ref|YP_004403205.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328808433|gb|AEB42605.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 487

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 102/402 (25%), Gaps = 84/402 (20%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R    RR  +    ++          T    +  + + P     T+   ++ +       
Sbjct: 86  RGDRRRRTEIADLLQTAVRARRPLPETDRIRQLLHGDGPLTDIPTVADYLTGWLTHL--- 142

Query: 86  SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--------------- 129
           ++  N+   +ES     +I   GD    K+   HIR    + +                 
Sbjct: 143 TIDDNTIRGYESLVRVHLIPHLGDIPLDKLRASHIREMFTAIERRNDAIIAARTSPDPAV 202

Query: 130 -----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                      P +  +    +R     A+  E +      ++ +          W  E 
Sbjct: 203 RQSVTGVRTTGPGTRQRIRACLRKAINDALADELIVGTNPATLVKVPGDRPVPIIWEDER 262

Query: 179 MQQFK----------------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
           +Q +K                                  + F+ Y G R  ++C      
Sbjct: 263 VQHWKATGEVPGPIMVWTDVQVAEFLDYAAIHAPDLHPLWHFMAYRGPRRGEACGLRDSE 322

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMK------------------------------LLA 246
           ++ +                      K                                 
Sbjct: 323 VRLHRRETTINNQIATHGYTPVQKAPKSRAGNRDVVLDADTVKVLTAYKARRAAWRLAAG 382

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
                   FF+  D +  +    S  F+    KAG+     H +R  +AT++ DAG    
Sbjct: 383 AAWPDTGLFFVRPDGRPWHPIGVSQRFRRLIRKAGLPPIRLHDLRHSAATLALDAGVDIK 442

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +    G  T       T  +   +L    +  +++ + +  
Sbjct: 443 VVSEQLGHST-TTLTRDTYQSVSKQLHHDAADAVANKIKNGR 483


>gi|307130676|ref|YP_003882692.1| Phage integrase [Dickeya dadantii 3937]
 gi|306528205|gb|ADM98135.1| Phage integrase [Dickeya dadantii 3937]
          Length = 416

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 95/348 (27%), Gaps = 32/348 (9%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +       G  I+   Y+R    +R  I        +   A     +      + I+  
Sbjct: 30  GLYLLVKPSGSKIWRFNYYRPDTKKRALISFGAFPAVSLAEARQRRESAKALISKGIDPQ 89

Query: 65  RKKPT-----------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYR 112
             +             T   + +++ +      LA N+           +     +    
Sbjct: 90  FHQQQQREQEQAISLNTFAKVAADWYEVKKSQQLAANTIKDIWRSLEKYVFPFIANQPIS 149

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++T +H  + +E  + +    +  +    +  +  +AV    +  NP   + +  +    
Sbjct: 150 QLTARHFITALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVK 209

Query: 171 IRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               T          +  S  S   Q RL  E+ L +  R +++       +     +  
Sbjct: 210 THMPTIRPEALPGLMKTLSVASIELQTRLLIEWQLLTVSRPAEAAETRWSEIDLMQNTWT 269

Query: 226 TQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATKA 280
                  +    +     + LA+    K                          A   + 
Sbjct: 270 IPAGRMKMRREHVIPLPPQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRRM 329

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           G       HG+R   +T + +AG     + A       ++    Y + 
Sbjct: 330 GYKGVLVSHGLRAIFSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|168705229|ref|ZP_02737506.1| Phage integrase [Gemmata obscuriglobus UQM 2246]
          Length = 361

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 89/344 (25%), Gaps = 35/344 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +  +GK +    K  G  + L               L G                T+   
Sbjct: 16  KKPNGKYLARKAKQVGNEL-LRSSKTFDTRKDAQDWLKGQDQP--------AAAGTIGEW 66

Query: 75  ISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132
           +  + +      ++  +           +  + G    R +T + I   +        S 
Sbjct: 67  LDAWME-MRKPDISNKTYSHDKWRVDTHLKPRIGSTRLRDLTREKIVLMLAQMATDGQSD 125

Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
               +    +R     AV    + +NP   ++ P  K +  R    +    F +      
Sbjct: 126 SERQKAGAVLRNALGSAVAFSRIPVNPMAELKLPNPKRDEKRAMLPDQCVAFLTAAESLH 185

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----------- 239
           Q   AF   L +GLR ++           +   IK       +T E  D           
Sbjct: 186 QLGYAFRLWLDAGLRPAEMFALCWDDFHPDKSEIKVSGAQDGVTNERKDTKTGKVRTIEL 245

Query: 240 ------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                   +        GK     +       +      F     KA +   + + +R  
Sbjct: 246 APSTVAAMLAARPPLWTGKLVMPDSRGGAWWQSNFLRSPFGPIRKKADLEWVTPYTMRHT 305

Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGA--DRIRLGI 333
            AT+   A      +    G   V    + Y      D+ R   
Sbjct: 306 MATLLLRAHVPLKVVSERLGHADVMTTLKHYAHVMPGDQQRAAA 349


>gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
 gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886]
          Length = 320

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 84/303 (27%), Gaps = 59/303 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAI 134
           ++  +    A  S  ++  +    IR        ++    +          R  +P++  
Sbjct: 10  KEHMYRKRYAKKSIEAYLHWIAAFIRFHNMKHPAEMGDVDVELFLSHLANQRDVSPNTQA 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++  ++Q           +R   K +     T+E++++  S      Q  L
Sbjct: 70  LALNALVFLYRDIIQQPLSVSLDFAMTKR---KQKLPVVLTREEVKKLLSLVPA--QHYL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------------------- 228
               +  SGLR  ++ R  V+ +  +   ++                             
Sbjct: 125 ISALMYGSGLRLMEAVRLRVKDVDFDYQCLRIFDGKGGKSRIVTLATELQCPLKQQIDQV 184

Query: 229 ----------------TGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNA 266
                                  +      K L    +                +  +N 
Sbjct: 185 NSILCRDVNHHNYAGVWMPHRLRQKYASQSKSLPWQYLFPSHKVSIDPETRVIRRHHINE 244

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            Q        A KA + K  + H +R   AT    +GA    + A  G   V   + YT 
Sbjct: 245 KQIQRSINTTAKKANIRKHVTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTH 304

Query: 325 GAD 327
              
Sbjct: 305 ILQ 307


>gi|330719212|ref|ZP_08313812.1| prophage integrase [Leuconostoc fallax KCTC 3537]
          Length = 373

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 120/374 (32%), Gaps = 43/374 (11%)

Query: 11  VTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAY--MSALTGSTPKREYINSP 64
           + +  T  GK+     Y        R++            +    ++     + +Y    
Sbjct: 3   LQQVNTPKGKVWEVNGYLMNDDQKVRVKKRGFANKRRAQQWFNNESVLFYNGESKYNKKE 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           R    T+K L   +  +    ++  ++     + F   I+   GD     I    ++  V
Sbjct: 63  RPTVLTVKALYDIWIDAYQ-RTVEESTLRKTMNLFALHILPDWGDVLVSDIKPIQLQLYV 121

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QF 182
            + +         + S R L   A++ + +A++P   ++ PK +    +P    D+    
Sbjct: 122 NTLQSKLLRYRVVINSFRRLLSLALKMDMIAVDPFTKIDLPKERRRLDKPKQFMDIDEFK 181

Query: 183 KSFWSEGSQPRLAFEFLL-------YSGLRCSDSCRAGVQHLQNNI-------------- 221
           +      SQ RL  +          ++G+R  +      Q +  +               
Sbjct: 182 RFIDVLDSQYRLINKQAYTLLRLGAFTGMRTEELLALQWQSVDFDNGYISVVQALGRGLN 241

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WF 273
              +  + +   +  T+++ +  + +L+          IN+           I     W 
Sbjct: 242 GGTYVKEPKSRTSRRTLKIDNKMLAVLSEWYEYTAYKEINDYVFNHEGHTLQILRPNKWL 301

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
              + K  V    S H +R   AT++ D GAT  ++    G          Y+      R
Sbjct: 302 HDVSNKYNVAVGLSMHKLRHTWATLALDRGATVKQVQTYLGHADASITLNVYSDIT--KR 359

Query: 331 LGIKNSRRISSVVD 344
              +    +S ++ 
Sbjct: 360 ASDEAGSILSGIIG 373


>gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11]
          Length = 409

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/400 (10%), Positives = 107/400 (26%), Gaps = 73/400 (18%)

Query: 12  TKERTRHGKIIYYF--RKGH---GRRIRLPYPHES----TFIPAYMSALTGSTPKREYIN 62
            +E T++    + +  R      G+   +          +   A +        + ++ +
Sbjct: 3   VREITKNKSTAHRYLERYTDPLTGKYKTVSVTRNKNNVRSQKDAQLELNKIIEQRLKHNS 62

Query: 63  SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIR 120
           + + +  T      E+ +           +    +S  + +           KIT  +++
Sbjct: 63  TKQLENLTFHDACDEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYLQ 122

Query: 121 SGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-- 176
             +     + S       +  +R +FK+A +   +     L      +K +         
Sbjct: 123 DIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAKTRNELQAKR 182

Query: 177 -------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
                        +            ++ R         EF + +G+R  +       ++
Sbjct: 183 NNYLEESEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDNI 242

Query: 218 QNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                                        T+ + +  T+ L    + LL    +  +   
Sbjct: 243 NIENKTLEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKEN 302

Query: 257 INNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
             N K               ++  + +   K     + +NK    H +R    +  A  G
Sbjct: 303 QWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLG 362

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340
                + A  G        + YT   D  ++      ++ 
Sbjct: 363 INLKAIQARVGHSDYKTTLDIYTHVTD--KMAQDMMNKLE 400


>gi|261494505|ref|ZP_05990991.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309889|gb|EEY11106.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 346

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 103/336 (30%), Gaps = 29/336 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +   R + G       Y++   +G+   L           Y + L  +  K  + N
Sbjct: 12  LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLGT-------NKYEAVLEAA--KLNFEN 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           S +        +   Y         A N+R S       + +  GD      KI  KHI 
Sbjct: 63  SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIRWLCKFFGDPPAPLEKIEPKHIS 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++ RK TP+ A   +     +  W + +E+         +  K+     R    ED  
Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTI--WNMAREWGYTTLPSPSQGVKKFPTKYREVYVEDYI 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             K +     +     E     G R  D C     H+ + I  I  QKTG  +  E+   
Sbjct: 181 LDKIYEFADERMADIIETAYLLGQRPIDICNIHHSHIYDGILHITQQKTGKKVRFEISGR 240

Query: 241 FMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGV 289
             ++L        +  F N   +K+        FK    +A                  +
Sbjct: 241 LKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRDM 300

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R  +AT  +       +     G  +      Y + 
Sbjct: 301 RAKAATDISLMTTD-EQAQKQLGHTSKRMTHHYIRK 335


>gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 416

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 83/271 (30%), Gaps = 18/271 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTP 130
           E+++       +  +   + + ++ +           D  +R++T   IR      ++  
Sbjct: 123 EFKRLVDKEERSQGTYNKYITVYNHLTEFIKERYHREDMAFRELTADFIREFDFYLRYDK 182

Query: 131 SSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185
             A   +      +  L + A+++  +  NP    E    +T+      ++  +      
Sbjct: 183 QCAHNTVWIYTMPVIALAELAIKKGLIRDNPFEDYEISMEETDRGYILKEDVEKLMMCQV 242

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                   +  F F  ++GL  +D  +    ++Q+     +   +    +    +  +  
Sbjct: 243 PHKRYELVKDIFIFSCFTGLAYADIKKLTRSNIQSFFDGHQWIISRRKKSDVASNVRLME 302

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV----NKSAHGVRKFSATISA 298
           +    I K      N+      T  +          KA +      + H  R    T+  
Sbjct: 303 IPKRIIEKYQGTTRNEFIFPVPTNATCNTHIGKLVEKAEIITEQKVTFHTARHTFGTMFL 362

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
             G     L    G K +   + Y K   + 
Sbjct: 363 TEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|225386262|ref|ZP_03756026.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
 gi|225047634|gb|EEG57880.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme
           DSM 15981]
          Length = 354

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 79/289 (27%), Gaps = 30/289 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           K+LI  +        L+  +  S+ S   +++ +       ++    I   +   +    
Sbjct: 69  KYLIQLFM--IKKRDLSKETLTSYLSAVKRLMVEINGKSLDQMDETDIDWYLTQYEQRNV 126

Query: 130 --------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    S+       +   + W  + + +A NP  S+   K   + I  ++ E++ +
Sbjct: 127 SSGGKKNEASTVNNERRFLSAFYTWMRKAKLIADNPVESIPAKKVPRKPIDYYSAEEIAR 186

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +    +  + R   E    +G R  +     +  L      I  Q         +    
Sbjct: 187 IRDAC-KNPRERAIVEVFRSTGARVGEIAEITLDQLDLETGDIMIQGEKGGRYRTIYLDD 245

Query: 242 MKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNKS--AHGVRK 291
                           +      +           +    K    +AG+      H +RK
Sbjct: 246 DARYYYRMYLATRKDDSPYLLPHSRKPYGKMSTDAYRSVMKTIGRRAGLMCRVYPHKMRK 305

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY-------TKGADRIRLGI 333
                  + G     +    G         Y       T  + R R+ +
Sbjct: 306 TLGMNLKNRGVDLGIIQEVLGHANPAVTSQYYAQSTPKTLRSVRERMAV 354


>gi|28630423|gb|AAO46045.1| integrase [Micromonospora phage pMLP1]
          Length = 392

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 100/346 (28%), Gaps = 48/346 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           ++G +        G+++ +   YP +++   A +            +  PR    TL   
Sbjct: 5   KNGPVYRIRDLVRGKKVTIQTGYPTKTSAKNAMVQFRAEQLQGNALM--PRGGQITLADF 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           + E+  S    +L   +  S  +     ++   G     ++  +  +  V   +      
Sbjct: 63  VGEWWPSYE-KTLKPTAVNSEGNRIRNHLLPILGHLTLDELDGQVTQQWVNDLEAGVGPW 121

Query: 130 ------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                         +       +  +   A+  + + +NPC S   P+R+ + ++  +  
Sbjct: 122 PESTRGRRKPLAAKTISNCHGLLHTICGAAIAAKRIRLNPCSSTMLPRREPKEMKFLSDP 181

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
           ++ +  +      +P +     + +GLR  ++       +       +            
Sbjct: 182 EIGRLITALPPHWRPLVMLL--VATGLRWGEAIGLRAGRVDLLAARPRLTVVEQLQELAS 239

Query: 226 -------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFK 274
                  + KT            + LL    I  +                   F   + 
Sbjct: 240 TGELVFQSPKTAKGRRTVSFTTKVALLLTPLIAGKKSDEVVFTAPKGGMVRTRNFRRIWV 299

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               +AG+     H +R   A I   AG     +    G  ++   
Sbjct: 300 KACEEAGLPGLRIHDLRHTHAAILISAGRPLSAISRRLGHSSIAVT 345


>gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 411

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 100/400 (25%), Gaps = 76/400 (19%)

Query: 14  ERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           E  R     Y +      GRR  +     +         +       +   + +    ++
Sbjct: 17  EVQRSSDKRYMYTYTDPMGRRKFIYANDLAELREKEAKLMKDQLDGLDLYVAGKA---SV 73

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV----ESR 126
                 Y  +    +L  +++ S+   +D  +    G      I    +           
Sbjct: 74  NDTFDRYMSTK--YNLRESTKSSYLYTYDHYVRDTFGKKRIADIKYSDVLQFYYYLLNEV 131

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQ 181
           K +  +       +   F+ AVR E +  NP   V         +        T E  + 
Sbjct: 132 KISLGTLDTVHCLLHPTFQLAVRDEIIRNNPTDGVMKEISRESGKNRGIRHALTVEQQRA 191

Query: 182 FKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKT 229
           F  + +        +      L +G R  ++     Q          + +++   +  ++
Sbjct: 192 FMEYIANHPIYYHWWPMFTVLLGTGCRIGEALGLRWQDLDYDKRTISINHSLSYYQKPES 251

Query: 230 GTIITVELPDGFMKLLAMTPI---------------------------GKETFFINNDKQ 262
              +           +   P+                                F N    
Sbjct: 252 NKSVLRISKPKTEAGIRTIPMLDIVKDAFEMLYEEQLENGFNESEIDGMSGFIFCNRFGT 311

Query: 263 KMNATQFSIWFKAKATKAGVN-----------------KSAHGVRKFSATISADAGATAH 305
             N    +   K  A     +                  S H +R    T   +      
Sbjct: 312 VPNPQTVNHTIKRIANSYNADEVVRAKKERRDPIILPNFSCHHLRHTFCTRLCENETNLK 371

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
            + +  G + ++     Y +  +  +   ++   +++ +D
Sbjct: 372 VIQSIMGHRNIETTMDIYAEATEEKK--QESFENLAAKLD 409


>gi|69245161|ref|ZP_00603285.1| Phage integrase [Enterococcus faecium DO]
 gi|257879619|ref|ZP_05659272.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257890286|ref|ZP_05669939.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|293560121|ref|ZP_06676625.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|314938185|ref|ZP_07845490.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
 gi|314943771|ref|ZP_07850506.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|314951140|ref|ZP_07854198.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|314994622|ref|ZP_07859882.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|314995568|ref|ZP_07860662.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|68196004|gb|EAN10437.1| Phage integrase [Enterococcus faecium DO]
 gi|257813847|gb|EEV42605.1| phage integrase [Enterococcus faecium 1,230,933]
 gi|257826646|gb|EEV53272.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|291605988|gb|EFF35418.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313590156|gb|EFR69001.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a01]
 gi|313591027|gb|EFR69872.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133B]
 gi|313596619|gb|EFR75464.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133A]
 gi|313597495|gb|EFR76340.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133C]
 gi|313642532|gb|EFS07112.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus
           faecium TX0133a04]
          Length = 381

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 113/380 (29%), Gaps = 48/380 (12%)

Query: 12  TKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            +  T+ GK   Y       K  G+  ++      T   A   AL+      +     + 
Sbjct: 5   KQYETKKGKFWLYEAYLGMNKMTGKPDKVRRRGYKTKKEA-QLALSRLQVDYDKNGIKKA 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T K +   + ++            +   +   I+ K G+    ++T K  +  V S 
Sbjct: 64  NNETFKEVYDLWLETYKTTVREATFMKTEIKFRKWILPKYGNLRVNEVTVKKAQQIVNSW 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----------WTK 176
             T        ++ + +F +A+    +  NP  +V  PKR T   +            T 
Sbjct: 124 AETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNVLMPKRTTTKHKEKVKVYSKEQLITL 183

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            D    K         +    FL YSG+R S++       +     ++   KT +     
Sbjct: 184 FDYLNSKPETYRNDFDKTLLRFLFYSGVRISEALALNWSDIDFQENTVTINKTLSQSKNG 243

Query: 233 ------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                   +     +    +L +        F    K+ +    
Sbjct: 244 YKISDPKTDCSAGVLPLDERTISILKKWQINQRKYMLTLGVTDPTMIFCGIYKELITHHA 303

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
                     KA V     H  R   A++  DAGAT  E+        + Q  + Y   A
Sbjct: 304 IYARLITICEKAMVPFLGVHVARHTHASMLLDAGATMVEVQTRLRHTKISQTIDCYGHLA 363

Query: 327 DRIRLGIKNSRRISSVVDSD 346
              +   K   ++   ++ D
Sbjct: 364 KETK--EKTVEKLVQHLNID 381


>gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973]
 gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973]
          Length = 409

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +   S  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDMLIKE-KESHIGIDIKEESMSAYHSTRKRLQEFIQKKYHVSDLAFSQLTESFIYELQT 172

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--- 177
             +    H  S+  +    ++ + + A R+          V   +   +  +   +E   
Sbjct: 173 FCLGELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDQEALN 232

Query: 178 --DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKAICFDELEEEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDAGSLWLKF--SRQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL  T    E  + +  +     +    +    KA   +AG+    ++H  R
Sbjct: 291 TGVLCRIKLLPETVRLIEKMYSDEREALLPFIKYPTYQSCLKALRLRAGISFPFTSHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 390


>gi|268589344|ref|ZP_06123565.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
 gi|291315370|gb|EFE55823.1| site-specific recombinase, phage integrase family [Providencia
           rettgeri DSM 1131]
          Length = 401

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 121/369 (32%), Gaps = 42/369 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS----- 63
            +    T+ G I + +    +GRR  + +   S        A       ++ +N+     
Sbjct: 24  GLYVAVTKTGSISFRYDYRFNGRRETITFGRYSDDGITLAEAREMLIDAKKTLNAGISPA 83

Query: 64  --------PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
                    RK   TLK    +Y     +   A ++     +  ++ +    G     +I
Sbjct: 84  SQKRDGITKRKVGLTLKDYTVKYLSETRF---ADSTLDMKTAIVERDLYPTLGKLQLEEI 140

Query: 115 TTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           TT+ +R+  E  K     S+A+Q    +  +F + + + Y   NP  S++     T   R
Sbjct: 141 TTQKVRALCEKIKERGGNSTALQIREIVGSVFDYVIDRGYEIENPVSSIKASSIATFEAR 200

Query: 173 PWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                             +S     +LA +F+L + +R S+  +A    +  +       
Sbjct: 201 DRAMTAKEVGIFFNELENYSCYPTLKLAVKFVLLTLVRKSEFIKATWDEIDFDERCWIIP 260

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFI---------NNDKQKMNATQFSIWFKAKAT 278
           K              +      +G +   +          +  + ++    +        
Sbjct: 261 KARMKRRRAHVIYLSEQAYDMLVGFKACAMGSNYLVPGRYDISKPLSNAALNNVIDGVVK 320

Query: 279 KA---GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR 330
           +    G+     + H +R+ ++T+  +AG  +  +      +       Y K   A++ R
Sbjct: 321 RINAKGINFEPLTVHDLRRTASTLLHEAGFNSDWIEKCLAHEQKGVRAVYNKAEYAEQRR 380

Query: 331 LGIKNSRRI 339
             ++    +
Sbjct: 381 DMLQQWANM 389


>gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
 gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase
           [Parabacteroides sp. D13]
          Length = 267

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 14/212 (6%)

Query: 144 FKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           F W +R+   A    ++        ++PK +       T E++++  +   E    + AF
Sbjct: 59  FAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDMLKCAF 118

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F    GLR SD  +     L  +         +       E      + L   P    +
Sbjct: 119 IFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLPERIGS 178

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
                 K   N        K   T AG+ K  + H  R  +AT++   G     +    G
Sbjct: 179 GDEKIFKLPKNDNSNRK-LKHWCTLAGITKNVTFHVARHTAATLNLSLGVPIETVSKLLG 237

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
              +   + Y K  D  +       +   V D
Sbjct: 238 HTKISTTQIYAKVIDANKKA--AVHKQDGVFD 267


>gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
 gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp.
           M62/1]
          Length = 307

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 78/287 (27%), Gaps = 15/287 (5%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y          +E I    K+   +   I  + +  H  ++A N+   +     Q + + 
Sbjct: 17  YSENRRLEASDKEEIAERMKE---IDSAIQGFCQYLHTKNMASNTIHVYSYALRQFLCRY 73

Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              D+  +   H+        + P +    + ++    ++   +        +       
Sbjct: 74  RQVDFSNL---HLYKVFLLEHYKPQTVNLRIRALNSYLEFTRAKSQKLSMVKIQQRNYLE 130

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                  +        +              F+  +G R S+  +   + ++N    + +
Sbjct: 131 NVISEADYEYLKNCLLRDEKYL---YYFIIRFMAATGARVSEVIQFQAEDIRNGYKDLYS 187

Query: 227 QKTGTIITVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
           +                 L     + I     F+N   +++         K  A   G+N
Sbjct: 188 KGNKVRRIYIPKALHQDALRWLEASKIQSGDIFLNRFGKRITPAGIRGQLKVLALNYGIN 247

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 H  R   A    +       L    G + ++    Y + + 
Sbjct: 248 PDVVYPHSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSS 294


>gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris]
          Length = 327

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVS 67

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E   +   +  +RP          + E++ +  +     
Sbjct: 68  AGTQNQALAALLFLYREILGLELPWMENLVRAKRP---RRIPVVLSVEEVARLLT--MLE 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------KT 229
              RL    L  SG+R  +  R  ++ +      I  +                      
Sbjct: 123 GACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQ 182

Query: 230 GTIITVELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT- 278
                + L    +            LA      +                          
Sbjct: 183 QRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRSGRVGRH 242

Query: 279 ----------------KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                           +AG++K  + H +R   AT   +AG     +    G K V   +
Sbjct: 243 HVSEEILQRAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQ 302

Query: 321 TYTKGADRIRLGI 333
            YT    R    +
Sbjct: 303 IYTHVLGRGASAV 315


>gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis
           12822]
 gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis]
          Length = 326

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 82/290 (28%), Gaps = 40/290 (13%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH--- 128
           ++++ +        + ++   +     Q+ + +        ++   HIR  V        
Sbjct: 14  MADWLRHLQAHRRYSAHTLDGYTRDLRQLAQLAAAAGLPLERVANGHIRHFVARLHAQGL 73

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185
            P S  + L + R  ++W      +  NP   V  PK      +  + E  Q        
Sbjct: 74  GPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPA 133

Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
                    +    FE L  SGLR ++     +++ +   +  ++               
Sbjct: 134 RLATEPAALRDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEVIVVGKG 193

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDK-------------QKMNATQFSIWFKAK 276
               +V +    +  L      +                      +++      +     
Sbjct: 194 GKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQLQLARL 253

Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           A  AG+      H +R   A+    +      +    G   +   + YT+
Sbjct: 254 AQAAGLPAHVHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTR 303


>gi|299137528|ref|ZP_07030709.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600169|gb|EFI56326.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 373

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 93/339 (27%), Gaps = 19/339 (5%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            + Y++ G  RR      +    +      +   T       +P+K   +   L  ++ +
Sbjct: 21  WLQYYQNGVKRRESAESSNRKEALEKLKLRIAELTTGSVTGLTPKKTRIS--ELAEDFIR 78

Query: 81  SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQF 136
                     S    E+ +   +    G     ++T+  +   V+ R+   +   +  + 
Sbjct: 79  DYKINGR--TSLDDAETRWRLHLEPFFGRMKASQVTSVLLNKYVDMRQQAGAANGTINRE 136

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L +++ +F    +     +       +                Q+      E     L  
Sbjct: 137 LAALKRMFNLGHQATPPRVFFIPHFPKLTESNARQGFLEDAQYQRLLESCPEMWFQALVE 196

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
               Y G R  +  +  V  +      I+     T           + +           
Sbjct: 197 AGCTY-GWRIGELLKLKVNQVDLENRVIRLHPGTTKNKEGREVTMTQTIHDLFELCIEGK 255

Query: 257 INNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310
              D             F   +      AGV     H +R+ +A     AG     +M  
Sbjct: 256 SPEDYLYTRPNGMRVRDFRDAWDKARIAAGVPGLLFHDLRRTAARNFRRAGIAEGVIMKI 315

Query: 311 YGWKTVDQAETYT----KGADRIRLGIKNSRRISSVVDS 345
            GWKT    E Y        +     ++  +++S    +
Sbjct: 316 GGWKTRSVFERYAIVSHTDIEDALQKLEQRKKLSKQKPT 354


>gi|299133965|ref|ZP_07027159.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298591801|gb|EFI52002.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 169

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 74/147 (50%)

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            F+  LY+GLR  D+ R G QH+++ I ++ T+KTG  +T+ +       L   P G   
Sbjct: 1   MFDIFLYTGLRRGDAARLGRQHVRDGIITLDTEKTGVRVTLPVLPELQATLDAGPTGDLA 60

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F        M        F+     AGV KSAHG+RK +AT +A+ GAT  +L A +GW+
Sbjct: 61  FIATASGNPMAKESVGTLFREACLAAGVRKSAHGLRKAAATNAANHGATVAQLEAIFGWE 120

Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341
               A  YT+ A+R  L      ++S 
Sbjct: 121 GGRMASLYTRSANRKFLAASAMSKLSR 147


>gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis
           ATCC 25840]
 gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis
           ATCC 25840]
          Length = 308

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEINEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 326

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 91/300 (30%), Gaps = 32/300 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV---- 123
           +  L+ E+     +  +   +  +        +R    + +     +T K   +      
Sbjct: 27  IDNLVEEFSAQRRFDGIKDATIDNDNDRIKVFLRYSYYTLNKTPDTLTDKDYFAFFTYLK 86

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------TKE 177
             R  + ++  ++   ++V ++  ++          S ER +     I+ +      T  
Sbjct: 87  RERNCSDNTVNKYFKLLKVFYR-LMKYSNFNDFVTESKERKRFSRFDIKHYDAIDEDTLN 145

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII 233
            + +     +  ++ R A    L   +G R S+ C        L   +F +   KT    
Sbjct: 146 TILKKLLEANGDTKIRDATFMRLLWDTGCRVSEVCNLTYSASDLNKGVFKLTNTKTKQDR 205

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNKSA- 286
           TV      +KLL             +   K      MN    S  F+    +   N +  
Sbjct: 206 TVVCSKETLKLLNYFLQHDSKNAPEDYLFKSGRGAKMNKYTLSARFRDIVVELKKNGTIP 265

Query: 287 -------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                  H +R   A      G     +    G  +++    Y+   DR    +    +I
Sbjct: 266 KNRWLVIHSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYSHSTDRKNKMLDQISKI 325


>gi|109392486|ref|YP_655615.1| gp36 [Mycobacterium phage Che12]
 gi|91980636|gb|ABE67355.1| gp36 [Mycobacterium phage Che12]
          Length = 371

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 114/366 (31%), Gaps = 44/366 (12%)

Query: 14  ERTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPR 65
           +  R G+I   Y     G R      +++        A       +   TP ++      
Sbjct: 10  KTQRSGRIQASYVNPQDGVRYYALQTYDNKMDAEAWLAGEKRLIEMETWTPPQDRAKKAA 69

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124
               TL+    ++        LA ++R  +  +   +I    GD    ++T   +R+   
Sbjct: 70  ASAVTLEEYTRKWLVE---RDLAESTRELYSGHAERRIYPVLGDVAVPELTPALVRAWWA 126

Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              ++ P++       +R +   AV  + +A NPC      ++  +          +   
Sbjct: 127 GMGRNHPTARRHAYNVLRAVMNTAVEDKLIAENPC---RIEQKAPDERDVEALTPEELDI 183

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------------- 224
                    R+A   L ++ LR  +      + + ++  ++                   
Sbjct: 184 VAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGKTMKLRVRRGGTRVGNKIVVGN 243

Query: 225 -------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                  +       +   + +       M    +          +++ + F+   K   
Sbjct: 244 AKTVRSKRPVTVPPHVATMIREHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGY 303

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KN 335
            K G      H +R   AT +A AGAT  ELMA  G  T   A  Y   ++     I   
Sbjct: 304 AKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQMASEARDEAIAAA 363

Query: 336 SRRISS 341
             +++ 
Sbjct: 364 MSKLAK 369


>gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 339

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/307 (9%), Positives = 82/307 (26%), Gaps = 32/307 (10%)

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFD---- 110
            K     +       +     ++          + ++  ++       +    +      
Sbjct: 16  AKPARKPAAFPAAPEIARAAQDWLDYLSGEKRCSRHTLAAYARDARFFLAFLAEHKGAPA 75

Query: 111 ----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                  +    +R+ +  R+       S ++ L ++R L ++  +++    +   ++  
Sbjct: 76  NAALLGALAPADLRAFMARRRAQGVENRSLLRGLAAVRSLMRFLEKRDLAKTDVFAAIRA 135

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-----------LLYSGLRCSDSCRA 212
           PKR     +     D ++     +   + R  +                  +  + S   
Sbjct: 136 PKRPHALPKALGVADARELVDPATRAGEAREPWIIARDAAALALLYGAGLRISEALSIDR 195

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNA 266
               +          K G      + +   + +                FI     +++ 
Sbjct: 196 DAAPIGKIDRVTIHGKGGKTRVAPIIEPVRRAIEDYIRLCPHELSGGPLFIGARGGRLSP 255

Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +  +      G+    + H +R   AT     G     +    G  ++   + Y  
Sbjct: 256 RILQLAMERMRGALGLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYA- 314

Query: 325 GADRIRL 331
             D+ RL
Sbjct: 315 AVDKQRL 321


>gi|257424935|ref|ZP_05601362.1| integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427603|ref|ZP_05604002.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430236|ref|ZP_05606619.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432935|ref|ZP_05609295.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|257435839|ref|ZP_05611887.1| integrase [Staphylococcus aureus subsp. aureus M876]
 gi|258449533|ref|ZP_05697635.1| integrase [Staphylococcus aureus A6224]
 gi|282913659|ref|ZP_06321448.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|282923576|ref|ZP_06331256.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus C101]
 gi|293500701|ref|ZP_06666552.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509651|ref|ZP_06668362.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus M809]
 gi|293524237|ref|ZP_06670924.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257272505|gb|EEV04628.1| integrase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275796|gb|EEV07269.1| integrase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279013|gb|EEV09624.1| integrase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282350|gb|EEV12485.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|257285030|gb|EEV15149.1| integrase [Staphylococcus aureus subsp. aureus M876]
 gi|257857041|gb|EEV79940.1| integrase [Staphylococcus aureus A6224]
 gi|282314444|gb|EFB44834.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322691|gb|EFB53013.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus M899]
 gi|290921200|gb|EFD98261.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095706|gb|EFE25967.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467748|gb|EFF10263.1| integrase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus M809]
          Length = 406

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLNDNTP 64

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 65  TTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 124

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ER 163
             +            +  L+  + +F++  R   +     L                 +R
Sbjct: 125 VFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 184

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
            K           +D+         G   R      L  EF   +G+R  +      + +
Sbjct: 185 NKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIKNEDI 244

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 245 DFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 304

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G+ K  S+H +R    ++ +  G 
Sbjct: 305 WNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEISSHILRHSHISLLSQQGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 365 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|257088813|ref|ZP_05583174.1| phage integrase [Enterococcus faecalis CH188]
 gi|281416435|ref|YP_003347355.1| integrase [Enterococcus phage phiFL4A]
 gi|256997625|gb|EEU84145.1| phage integrase [Enterococcus faecalis CH188]
 gi|270209611|gb|ACZ64150.1| integrase [Enterococcus phage phiFL4A]
 gi|315160617|gb|EFU04634.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315579463|gb|EFU91654.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 404

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 111/393 (28%), Gaps = 72/393 (18%)

Query: 10  FVTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI--- 61
           +V K++ + G I Y +R        G+  ++          A  +A      K + I   
Sbjct: 2   WVEKKKDKKGNITYQYRERYTDPRTGKTQKVTTTLAKNTKQAENAARRELEIKIQKILTD 61

Query: 62  -------------NSPRKKPTTLKWLISEYRKSAHWGSLAV----NSRISFESYFDQIIR 104
                                TL+ +I E+               ++   +    D ++ 
Sbjct: 62  YEEEKRLENLIKNEGVIPNNKTLEDMIKEWFDYIQDPKSKERKKGSTLSGYSYGIDSLLN 121

Query: 105 KS----GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +      D   + +T   I++  +      ++  S   +F   +R  F  A ++ Y+   
Sbjct: 122 EFLVIEKDKRIQDLTFDDIQAFYDRMIFDFEYQKSYIKRFRAIIRGAFTLAYKKRYIKNL 181

Query: 157 PCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRC 206
             +++ +              +  R   K + +Q     +E +       E   ++G+R 
Sbjct: 182 DAINLSKIVTPAKTVDDLINEQVPRYLEKAEAEQIFQVLNEYNPLYTQMLELQFHTGMRF 241

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTI------------------ITVELPDGFMKLLAMT 248
            +      ++  +                                T+EL D  ++++   
Sbjct: 242 GELIALESKNFHDGFLLDIHGTYDHATRSHTRGQKVPPKTRKSFRTIELGDAAVQIIKDR 301

Query: 249 PIGKETFFINN--------DKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                              + +  +    + +  +   +       S H  R    ++ A
Sbjct: 302 MYHNHFIKNKCSDFLFVTSNDRPYDLGTINSFIASHQIEFNTSTKVSTHVFRHTHISMLA 361

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +       +M   G +  +  E  Y     + +
Sbjct: 362 EKSIPIQVIMDRVGHEDRETTEKIYMHVTKKQK 394


>gi|116495444|ref|YP_807178.1| integrase [Lactobacillus casei ATCC 334]
 gi|89953897|gb|ABD83428.1| phage integrase [Lactobacillus casei phage Lca1]
 gi|116105594|gb|ABJ70736.1| Integrase [Lactobacillus casei ATCC 334]
          Length = 387

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 105/365 (28%), Gaps = 52/365 (14%)

Query: 9   PFVTKERTRHGK---IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSP 64
           P V + +T+ GK   +   +    G R          +  A +             ++  
Sbjct: 11  PGVYEYQTKKGKRFGVRRTYDDAMGERKEFSKSGFIHWQDADIEIKRFEAKLVSGEVSGS 70

Query: 65  RKKPTTLKWLISEYRKSAHWGSLA-----VNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
                T    I +Y +      +       ++  +  +++   +    G    + ++   
Sbjct: 71  LANRMT----IDQYYQQMAKRKMKMGIWRESTARANGNFYSKYLKPAFGKTPLQDVSRAK 126

Query: 119 IRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +  ++    +    ++       M+ +   A  ++ +  N    ++   +         
Sbjct: 127 YQRFLDELSQSGLALTTVHTIDAVMKSIMNAAEFEDVIDKNRLRGMQINGKAPRNKDLEP 186

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------- 224
                   +  +   +  +A       GLR  +      + ++ +   I           
Sbjct: 187 HSFELWLNAAKTNLDKYEMALIITATLGLRRGEVMGLRNESIKISHDQINDADVAQISID 246

Query: 225 -----------KTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINND 260
                        +   +  T+      +  L    I              K   ++NND
Sbjct: 247 MQRNTNELNGGPLKTKSSYRTIWAFGKTVDHLKYAMITADNLRQRNNIQAEKHWLWLNND 306

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++ T  +   +  + ++GV    H +R + AT +  A     ++M   G K +    
Sbjct: 307 GNPLHPTHLNRLMRRVSNRSGVEVYPHLLRHYFATQAIAANKPQIDVMHYLGHKNLQMTA 366

Query: 321 TYTKG 325
            YT+ 
Sbjct: 367 DYTRS 371


>gi|154246176|ref|YP_001417134.1| integrase family protein [Xanthobacter autotrophicus Py2]
 gi|154160261|gb|ABS67477.1| integrase family protein [Xanthobacter autotrophicus Py2]
          Length = 397

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/368 (10%), Positives = 106/368 (28%), Gaps = 35/368 (9%)

Query: 9   PFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTP---------- 56
             +      +G  I+   +R     +     P+ +  +         +            
Sbjct: 24  GGLHLLVNPNGSRIWRLAYRFAGKPKQISFGPYPTVSLAEAREKREDAKKQLLDNKDPTT 83

Query: 57  --KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRK 113
             K E + +   +  T   L+ EY +     + A  +        + +     G     +
Sbjct: 84  VRKVEKVTAAISEGNTFSRLVGEYIERLEMRNSAPATVTKNRWLLENLAGPALGRRPISE 143

Query: 114 ITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTE 169
           IT   + + ++  + +    SA +  +++  +F++A+   +        L     + K +
Sbjct: 144 ITPFEVLAVLQQVERSGRRESARRLRSAIGSVFRFAIATLRAQHDPTSALKDALERPKVK 203

Query: 170 GIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
                T            +        R A  F   +  R  +   A  + +  +     
Sbjct: 204 HRSALTDPKQLGGLMRSIDEYDGWPTLRSAMLFTALTFARPGEVRGARWREIDLDKAVWS 263

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWFKAKATKA 280
              +   +    +     + L +    +     +        +           +   + 
Sbjct: 264 IPAERMKMRRAHVVPLSRQALEVLSEIRPLSGSSELIFPSIRSNKKILSENAMNSALRRM 323

Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA---DRIRLGI 333
           G      +AHG R  +++I  + G +   + A  G    ++    Y +     +R+ L  
Sbjct: 324 GFTQEEMTAHGFRAAASSILNEKGHSPDVIEAALGHLDQNEVRRAYNRATYWPERVVLMQ 383

Query: 334 KNSRRISS 341
             +  + +
Sbjct: 384 AWADMLDA 391


>gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 410

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 87/311 (27%), Gaps = 27/311 (8%)

Query: 53  GSTPKREYINSPRKKPTTL---KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-- 107
            +   +E      +   TL     +I +  KS      A +S  ++      +    G  
Sbjct: 92  EAADVKEKFQGSMETQMTLLRMTDVICDDIKSRIGIDRAKSSYSTYHYMRCTLAEFIGSR 151

Query: 108 ----DFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D  + ++    I          + +   +   +L  ++ + + A +  Y       
Sbjct: 152 YKTKDLAFGQVDETFIHDYQSFVTGEKGYAIDTVRHYLAILKKVCRKAFKDGYADKFHFQ 211

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGV 214
               PK+  +  R  ++E  ++ +       +      R  F F  Y+G+   D      
Sbjct: 212 HFTLPKQTDKTPRALSRESFEKVRDVEIPEYRKSHRLARDLFLFACYTGVSYIDIVTITA 271

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSI 271
           +                          +KLL               +     M+      
Sbjct: 272 KDNLFTDEDGALWLKY-RRKKNELRASVKLLPEAIALIEKYRDENRDTLFPMMHHPNLKR 330

Query: 272 WFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328
             KA A  A +      H  R   A++   +AG     +    G   +   + Y + + +
Sbjct: 331 HMKALAALAEIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPK 390

Query: 329 IRLGIKNSRRI 339
                ++  R 
Sbjct: 391 K--LFEDMDRF 399


>gi|308177820|ref|YP_003917226.1| putative phage integrase [Arthrobacter arilaitensis Re117]
 gi|307745283|emb|CBT76255.1| putative phage integrase [Arthrobacter arilaitensis Re117]
          Length = 371

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 96/360 (26%), Gaps = 30/360 (8%)

Query: 1   MTPSLRLPP--FVTKE----RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           MT   R P      +     R   G  +  +    GR                 +    +
Sbjct: 1   MTRQTRTPGTTNARRRNPSARFPKGGWLGTYIDPEGRE--KAKTFARKIDAQAWAEGEAA 58

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             +     SP+   TT++     + K          S    +++  +I    GD   + I
Sbjct: 59  KIRSGAYISPQDAGTTMRVWSEHWLKGYEVNR--PGSVKQAKTHVKRINAAFGDMPLKDI 116

Query: 115 TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
               +++ + + K+     S+       +  +   AV    +   P      P    +  
Sbjct: 117 RPTAVKNWLAALKNEGLADSTIHALYRRLAHMLSDAVEDGLLVRTPISRKIAPPAGKQRP 176

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T+  +        +G +         ++GLR S+     VQ +      I       
Sbjct: 177 YVATEAQVWALYDAMPDGMKN--VILLGAFAGLRVSEIAALRVQDVDALRGYISPVIQYP 234

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----------ATQFSIWFKAKATKA 280
            + ++  +    +     +  E                              F+      
Sbjct: 235 GVPLKTEESKNHIPIPRELAFELNKNPAKWGSETFVTLENGRAAAPYTIEARFRTARATV 294

Query: 281 -GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
            G+      H +R F A+    +G    ++ A     +     + Y    +  +   + +
Sbjct: 295 EGLPENFRIHDLRHFFASFLIASGEDVKKVQAAMRHASAKTTLDVYGHLMEDAKESTRAA 354


>gi|295837904|ref|ZP_06824837.1| integrase [Streptomyces sp. SPB74]
 gi|295826727|gb|EFG65002.1| integrase [Streptomyces sp. SPB74]
          Length = 414

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 101/369 (27%), Gaps = 59/369 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           HG++    R       R         + A +  L             R  P T+   ++ 
Sbjct: 26  HGRVTVGVRDDGRPDRRHVERKTRAEVTAAVRELEKQRDANTLRKPGR--PWTVAMWLTH 83

Query: 78  YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSA 133
           + +S    ++  N+ + +       +I   G     K+  +HI       +       + 
Sbjct: 84  WIESIAPLAVNENTMVGYGVAVRKHLIPALGAHRLDKLGPEHIERFYGKMRANGRKAGTI 143

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            Q   + R     AVR+ ++A NP    + P+   E I P+T  ++++  +   +  +  
Sbjct: 144 HQIHRTFRTALNEAVRRGHLARNPVQLAKAPRLNEEEIEPYTVAEVRRLLAAADKR-RNS 202

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL---------------------QNNIFSIKTQKTGTI 232
             +   L  GLR  ++       +                       +    K       
Sbjct: 203 ARWAVALALGLRQGEALGLKWDDIDTARGVLYVRRSRRRPRYAHGCGDTCGRKAGYCPER 262

Query: 233 I------------------------------TVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                            E          M    +   F     +
Sbjct: 263 RRTNPETADTKSRAGRRAVGLPAQLGDLLKEHREKQLTERAAAGMDWSEEGWVFATPTGR 322

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                     +K     AGV +   H  R  +AT+    G +   +M   GW T   A  
Sbjct: 323 GTPPRTDYDEWKELLRTAGVRDGRLHDARHTAATVLLILGVSERAVMGLMGWSTTAMAAR 382

Query: 322 YTKGADRIR 330
           Y    D +R
Sbjct: 383 YQHMVDTVR 391


>gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 355

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 80/312 (25%), Gaps = 54/312 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           R    T+K  + + R+      +A  +  ++ ++    IR        ++    I S + 
Sbjct: 7   RLPEKTVK-FMDKLREFMRARHMAYRTEKTYCNWIADFIRFHNRTHPSELEQGSIDSYLS 65

Query: 125 SRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                   S     T++  L  +   +        L+     R       ++  +  +  
Sbjct: 66  HLAVRRCYSINTQKTALNALV-FLYEKFLGVPVGELAFTPSTRPRILPVVFSHREALKVL 124

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV------ 235
           S        R+    +  SGLR  ++ R  +Q +        ++  K             
Sbjct: 125 S--ELSGIYRIIGSLMYGSGLRVMEAVRLRLQDVDFEQQCIMVREAKGMKSRRTLLPKSL 182

Query: 236 ---------------------------------------ELPDGFMKLLAMTPIGKETFF 256
                                                      G+  L        +   
Sbjct: 183 IPGLQAQRTFVLSLHAKDLLEGFGEVYLPFALAKKYPNAPKEPGWQYLFPANMRALDPRS 242

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
               +  +   Q     K     A ++K  S H  R   AT    +GA    +    G K
Sbjct: 243 QVVRRHHIGEQQVQRQVKKAIVAAAIHKKASCHTFRHCFATNLLRSGADIRNIQELLGHK 302

Query: 315 TVDQAETYTKGA 326
            +   + YT   
Sbjct: 303 DLSTTQIYTHVV 314


>gi|300362050|ref|ZP_07058227.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
 gi|300354669|gb|EFJ70540.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03]
          Length = 367

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 111/357 (31%), Gaps = 37/357 (10%)

Query: 10  FVTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            V +++       +Y ++      G+R  L      T   A  +    +    + I+   
Sbjct: 2   GVYQDKK---LKKWYVKRSWYDIDGKRHYLTRRGFKTKREAEKTDNKLAVEIDDGIDVTE 58

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                      ++ K+   G++A N+ I +     +I    G    + I     +  +  
Sbjct: 59  NPI--FADYYDDWVKTYKKGNVAPNTLIEYNLEGKRIRTLLGAAKIKNINRSKYQKVINE 116

Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
             + H  ++  +   ++R   K A++   +  +   +++    K   ++    E      
Sbjct: 117 FGKNHAKNTVKKLHRAIRTCVKSAIQDGIITRDFTENIQLAFNKDHDLKVDYLEYDEIKL 176

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--------------HLQNNIFS 223
                 +  +            L +GLR S+      +               + +    
Sbjct: 177 LLNHLYNAANPNFPGSYMILLGLTTGLRESEMAGLKWEDLDFEDNTIKVRRSWVYSQKEY 236

Query: 224 IKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             T+   ++  + +PD  MK +        ++ F+        N+   +   +    +  
Sbjct: 237 GPTKNESSVRPIGVPDFIMKKIKELKINDPEKVFWSKARNGFPNSKSLNRTLRDNLAELK 296

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334
           + +     H +R     I   A  + +++    G  T     E Y +  ++ R  I 
Sbjct: 297 IKREGYHIHSLRHSQVAILLSADVSTYDIAQRLGHATTKTTEEIYAETFEKHRQKID 353


>gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
 gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM
           17393]
          Length = 407

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 79/295 (26%), Gaps = 22/295 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSG-- 122
            +  I  + K     +    +  S+    + +           D  +  +    I +   
Sbjct: 113 FRTFIEHFEKRVGV-NREKGTAQSYRYACNCVAAFIQEKYKLSDVPFTALNRSFIDNYDL 171

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R+    + +  +T +  +   A+ +  +  +P    E    + E  +  T  ++Q
Sbjct: 172 YLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEAEHPEREQ-KYLTAAELQ 230

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           +  +      +       F F  Y+G+   D CR   +   +  +               
Sbjct: 231 RLMTTPLHDPKLYHIRDLFLFSCYTGIPYGDMCRLTTEDLEVAEDGEVWIKTARKKTKID 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                    L +    ++           +  + +   K  A   G+ +    H  R   
Sbjct: 291 YEVPLLDIPLLILDKYRDMAPEGKLLPMYSNNELNRTLKRIAAICGIERKLVFHCGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT      G     +    G   +   + Y K  D         R +   +    
Sbjct: 351 ATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKIDMDT--RSLEEKIAGRF 403


>gi|29830523|ref|NP_825157.1| phage-related integrase [Streptomyces avermitilis MA-4680]
 gi|29607635|dbj|BAC71692.1| putative tyrosine-family recombinase/integrase [Streptomyces
           avermitilis MA-4680]
          Length = 438

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 93/384 (24%), Gaps = 63/384 (16%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
             V  +R   G +    +    G      +P     +     A T +   R     PR  
Sbjct: 21  RRVKSDRYGSGARYRARYVGPDGTEKSKSFPDRQKRLADQWLAHTEADMARGQYIDPRAA 80

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126
             T +     +  +        N++ S ES          G          HIR  V   
Sbjct: 81  RVTFQQYAETWVST---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRDWVRQL 137

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S A    +++R     AV   +++ NPC +        +  R     +     
Sbjct: 138 SENGIRGSYARTIYSNVRAALSAAVDDGHLSRNPCAARSVRPPTVDDRRVARTPERVFAV 197

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
                  + R   +     GLR  +     V  +     ++   +               
Sbjct: 198 RAGMPE-RFRAMVDLGGGCGLRQGEILGIAVDAIDFESDTLHVVQQLKLSRSKAVFAPPK 256

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDK--------------------QKMNATQ 268
            G +  V LP      L           I                             + 
Sbjct: 257 GGKLRDVPLPGPVADALRAHMKRFPPVDITLPWKVADGPLITKRLIFTGPRGGHVWRTSL 316

Query: 269 FSIWFKAKATKAGV--NKSA------------HGVRKFSATISADAGATAHELMATYGWK 314
               +K     AGV  ++              H +R F A++  DAG     L    G  
Sbjct: 317 NEEAWKRALASAGVIPDRKPGKSYAESRENGMHALRHFYASVLLDAGENIKALAEYLGHS 376

Query: 315 TVD-QAETYTKGA----DRIRLGI 333
                   Y        +R R  I
Sbjct: 377 DPGLTLRVYAHLMPSSQERTRKAI 400


>gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 291

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 86/265 (32%), Gaps = 26/265 (9%)

Query: 88  AVNSRISF-------ESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKH----TPSSAI 134
              ++ ++       +   + + ++    D   ++IT  HI +     +     + ++A+
Sbjct: 6   KTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEITVTHIENFYLYLRQECEVSNNTAM 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-- 192
           +F+     +  +A +     I+P  + +            T+E++        +  +   
Sbjct: 66  KFVQRFHTILLFAQKSGLSFIDPFGNFKF-NFDKTDRGYLTQEEIDTIYYKEFKSKRLEH 124

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            R AF F  Y+GL   D      + ++  +   K             + F+ LL +    
Sbjct: 125 VRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWI--MKDRGKTGVESFIPLLQIPLDI 182

Query: 252 KETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATA 304
              +       K    ++  + + +    A    +NK    H  R   AT      G   
Sbjct: 183 LAKYEGKLKNGKLLPVISNQKMNEYLAEIAAICQINKRITYHLARHSFATEICLTKGVPI 242

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G   +   + Y +  DR 
Sbjct: 243 ESVSKMLGHTNIQTTQIYARVVDRK 267


>gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3]
 gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3]
          Length = 407

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 82/299 (27%), Gaps = 24/299 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
           TL      + ++       +  V S  ++ + +  I R         D  +  +    I 
Sbjct: 108 TLLGYFRRFIRNFEKRVGINRTVGSLRAYSNAYSHIERFLQAQYKLSDIPFSALDRSFID 167

Query: 121 SG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                    R   P + I     ++ +   A+    +  +P +  E P R     +  T 
Sbjct: 168 KYDLYLRTERNLAPGTIINLTVQLKTIVGEAIADGIITASPFMGYE-PVRPKHVQKYLTA 226

Query: 177 EDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231
           E++ +  +           R  F F  ++G+   D       +L    +           
Sbjct: 227 EELHRIMTTPLHRQTLYHVRDMFLFSCFTGIPYGDMRLLTKDNLCLAEDGIWWIKSARQK 286

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
                        L +      T   +        +  +++ K  A    +++    H  
Sbjct: 287 TKIEFEIPLLDLPLQILKKYSGTAPGDKLLPMYCNSTLNLYLKEIARICHIDRPLVFHAG 346

Query: 290 RKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           R   AT      G     +    G   ++  + Y K  D         + ++  +    
Sbjct: 347 RHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKIDADT--KALNRKISERF 403


>gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium]
          Length = 161

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT    AG     +    G   V   + YT 
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107]
 gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107]
          Length = 323

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 77/303 (25%), Gaps = 59/303 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAI 134
                    A  +  ++  +  + I          +  + + + ++           +  
Sbjct: 11  YDEMMRRRYAKRTIETYLHWIKRYIVFHNKQHPSLMGDREVEAYLDHLVLQHNVAGPTQA 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++  L++     E +     L +   K +     P      +      +  S   L
Sbjct: 71  LVLNALSFLYR-----EILHKPLSLELRFVKSQKTRKLPVVLTRDEITALMANISSNHYL 125

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------------------- 228
               +  SGLR  ++ R   + +  +   ++                             
Sbjct: 126 PAALMYGSGLRLMEAVRLRTKDIDFDYCCVRVWNGKGGKHRTVTLAPELKKPLTVQIQRV 185

Query: 229 ----------------------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                     ++     G+  L     +  +       +  ++ 
Sbjct: 186 EYLLSKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSDRLSIDPENQRVRRHHIDE 245

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +      +  + KA + K  SAH +R   AT    +GA    +    G   V   + YT 
Sbjct: 246 SGLQKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTH 305

Query: 325 GAD 327
              
Sbjct: 306 VLQ 308


>gi|150400371|ref|YP_001324138.1| phage integrase family protein [Methanococcus vannielii SB]
 gi|150013074|gb|ABR55526.1| phage integrase family protein [Methanococcus vannielii SB]
          Length = 322

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 93/311 (29%), Gaps = 30/311 (9%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKIT 115
           +      K+P  LK  ++++++   +  +  ++  +  +     +    +       ++T
Sbjct: 11  KPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLERLEKSPNELT 70

Query: 116 TKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-------VRQEYVAINPCLSVERP 164
                         RK + ++  ++   ++V ++          ++E          E  
Sbjct: 71  NADFVKFFNFLERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQERKRFSGFEIK 130

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIF 222
                             +S      +      FL  SG R S++     G   L+   F
Sbjct: 131 HYDAVSSELLNDIINIVVESKSRTKIRDATIIRFLWDSGCRISEALNLTYGDSDLEEGTF 190

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAK 276
            ++  K     TV      + ++                F N+D + +        F+  
Sbjct: 191 VLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGRGWIGEIFRKA 250

Query: 277 ATKAGVNKSA--------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +               H +R   A    + G     +    G K++D    Y+   +R
Sbjct: 251 VDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSHSKER 310

Query: 329 IRLGIKNSRRI 339
               IKN ++I
Sbjct: 311 KEKMIKNIQKI 321


>gi|254497238|ref|ZP_05110046.1| putative lambdoid prophage Rac integrase [Legionella drancourtii
           LLAP12]
 gi|254353466|gb|EET12193.1| putative lambdoid prophage Rac integrase [Legionella drancourtii
           LLAP12]
          Length = 401

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 27/278 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
             +T+  L+ EY + A   +L  ++   +    +  +    G+   + +++  IR+ V  
Sbjct: 91  VKSTVGELLKEYMEIAE-KTLEPSTFNGYRKTCEAHLYPAFGNIPIKDLSSMIIRNYVTK 149

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + T  +    LT +R     A+    +  NP   +   K   +  R    E     +  
Sbjct: 150 LELTLKTIRNILTPLRNTLDQALNDGMITSNPLDRLVLSKLVDKKTRSSNWEVDPFNQEE 209

Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQK 228
                     Q R  F+F  YSGLR S+        +      ++            T+ 
Sbjct: 210 IKAILSEAKDQARNLFQFAFYSGLRTSELIALEWGDIDWLNGIVRVSRAVVLKKEKGTKT 269

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAG 281
                 V L    ++ L                     T +          +     KAG
Sbjct: 270 KSGQRDVLLLPPALEALQNQKKFTFLEGARVFYNPRTNTAWETDGQIRKTCWTHILKKAG 329

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           V     +  R   A++   AG  +  +    G K  + 
Sbjct: 330 VRYRNPYQTRHTYASMMLSAGENSLWVAKQMGHKDTEM 367


>gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 371

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 93  ADFLEYYRKQLRKHDQK------WEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLLSAK 146

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                   T +SA  + ++ R   K   R   +  N    +++ + +       + E++ 
Sbjct: 147 KLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVEELY 206

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    + A  F   + LR SD      + + +     K     T         
Sbjct: 207 KLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAEDII 266

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +   I  K     AG+ K  + H  R+  AT+ A
Sbjct: 267 PISEEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQA 326

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 327 AAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 365


>gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407]
 gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407]
          Length = 327

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 84/314 (26%), Gaps = 49/314 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKITTKHI---RSG 122
           I ++         A N+  S+    +                     ++   +I   R  
Sbjct: 11  IEDFLLYLEGLRYAPNTIKSYRFDLEGFFTFAIPHNKSMEFEFKRLEQLLLLYINSLRVY 70

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---- 178
               ++  S+  +     R   K+  + EY++ +    +E  K K    +     +    
Sbjct: 71  NNKSEYEISTLNRKRACFRKYIKFLNKWEYISSDFSHKIESMKNKKNPNKDILNHEEVAK 130

Query: 179 -----------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------ 221
                               +  + R  F  LLYSGLR S+      +H           
Sbjct: 131 VQYYLDSIQTSPWLTPKKQEKYIRNRFIFYTLLYSGLRVSELTNLRWKHFNITEGIIIVD 190

Query: 222 ----FSIKTQKTGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFS 270
                  +T      +  E       LL+M                  +    +      
Sbjct: 191 EGKGNKNRTIPIHEELVQEYDTYKSSLLSMYGKEHPILTGYLFPRNEKHPDISLTTKTIR 250

Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
           +  +    ++ +   + S H +R   A+ S     +   L +  G          Y    
Sbjct: 251 LIIRTIVKESSIVDKHISPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHVI 310

Query: 327 DRIRLGIKNSRRIS 340
           D  +   +  +++S
Sbjct: 311 DDKQKENE-LKKLS 323


>gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
 gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19]
          Length = 347

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R +++  N    +++ + +       T ++++Q 
Sbjct: 130 HSNRPISLNSASGYYSTFRGLLKIAYRDKWLRENINDYLDKIEPQDVKKEYLTLDEVKQL 189

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 190 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFAIAPDQGYCLRI--RTQKTQTEATL 247

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +                 + +  +  +   K    KAG+    + HG R   A I    
Sbjct: 248 PISYEAYELCGMPDTGKVFKGLKRSMINYPLKNWLKKAGITKPITFHGFRHSYAVIQISL 307

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 308 GTDIYTVSKMLTHKNVSTTQIYADLVNVKKR--ETANKIS 345


>gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 355

 Score = 89.8 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 276 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQR 335

Query: 322 YTKGA 326
           YT  +
Sbjct: 336 YTHVS 340



 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+VN+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSVNTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA        +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLT 116


>gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 385

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 76/264 (28%), Gaps = 14/264 (5%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQ 135
           RK         ++R +  +    +       +   I    +       K      ++  +
Sbjct: 111 RKWVEHSERKRSTRNNLNTTLALVQEFRPHLNISDIDYAFLLQFESFLKQRALKTNTIAK 170

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----- 190
            L  +R  +  AVR+   A       +   R TE    +   +  +     +        
Sbjct: 171 HLFHLRTFYNEAVREGLAAPESSPFTKYKIRTTESRHVFLLPEELEKLEKLALALEGKPL 230

Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                AF F  Y+GLR SD  +   ++L             +  T       + LL    
Sbjct: 231 CHSLDAFLFCCYTGLRYSDFTKLSEKNLVCPDKKHAWLLFKSQKTGVESQLPLDLLFQGK 290

Query: 250 IGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
             +      +             +         A + K  S H  R  +AT+   +GA  
Sbjct: 291 AVRILEKYEDKNSFFRLKPNPDVNKDLIRIGKLAQIEKHFSFHSSRHTNATLLIYSGAKL 350

Query: 305 HELMATYGWKTVDQAETYTKGADR 328
             +    G +++   + Y +   +
Sbjct: 351 TTVQKLLGHRSIKTTQIYGEVFSQ 374


>gi|312897917|ref|ZP_07757331.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
 gi|310621012|gb|EFQ04558.1| site-specific recombinase, phage integrase family [Megasphaera
           micronuciformis F0359]
          Length = 409

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/369 (10%), Positives = 88/369 (23%), Gaps = 70/369 (18%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSL 87
             ++  +               L     +   I + R  P TL   ++ +  +     + 
Sbjct: 22  TWKKKWIRSGTSKREAEKLERKLMSEKDEGTIILTGRGIP-TLLDFLTRWLDTCIKPPAR 80

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144
            V +  ++ +   ++I   G+    KIT   I +  +         ++       ++   
Sbjct: 81  KVATYTNYRAICKRVINDLGEHKLDKITPLMIATYYKDLSGRGLSNTTVRLTHRILKAAL 140

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQPRLAFEF 198
             AV+ + +  NP + V+ P          T  D           S  S  ++ +++   
Sbjct: 141 DQAVKWQLLNRNPLIDVDPPAPIKPKNEALTTTDALALIEYATKLSKQSGYTRNKVSCIL 200

Query: 199 LL--YSGLRCSDSCRAGVQHLQNN------------------------------------ 220
           LL  + GLR  +      Q +  N                                    
Sbjct: 201 LLGIFCGLRRGEIAGLRWQDVDFNESTLHIRHSLLRIPIDDLARLDYPYIKRSINSALVL 260

Query: 221 -----------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                      I   +   +         D             +    N      +   +
Sbjct: 261 DTVKTEASENSIIVPQHVISFLRHVKRQYDTNQMRFGPHFHNTQFVMANEIGDPYDPNWY 320

Query: 270 SIWFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                        +            H +R  +ATI  +       +            +
Sbjct: 321 RKTLHKLIQSYNDSHPDCPPLPLIRVHDLRHTAATILLENDVDIKLVSRQLRHSDTGITQ 380

Query: 321 -TYTKGADR 328
             Y    +R
Sbjct: 381 NLYQHVTER 389


>gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|171913488|ref|ZP_02928958.1| integrase family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 358

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 108/309 (34%), Gaps = 17/309 (5%)

Query: 18  HGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
            GK+ +  F    G               A + A          + +  ++    +    
Sbjct: 7   RGKVWWLRFTPAPGAAQHRQSLETQDEAVAIVKAREVQQRASTQMRAQMQECPAER---D 63

Query: 77  EYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAI 134
            Y         L  ++    ++  + +++ +     R+IT + + + V++ K   P +AI
Sbjct: 64  RYLAVMHRERELTESTLKFRKAAINHLVKFTQATTPRQITPRQVSAWVDALKKQNPETAI 123

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            +L+  +  F W  +   +  NP   V+ PK+ T+G + + + +  +     + G +   
Sbjct: 124 NYLSVAQSWFSWLQQGFKINSNPASQVKPPKKPTKGRKQFLRPEEARKLITAATGDRDLT 183

Query: 195 AFEFLLYS-GLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
              +     GLR  +   A                      K     T+ L   F + L 
Sbjct: 184 FALYCALHAGLRRKEVIEARPSWFDLDAGLLHVQATPTFVPKDKDNRTIPLTKEFREWLR 243

Query: 247 MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
                +E F ++ ++          F   ++    +AG++ + H +R+  A++    G +
Sbjct: 244 KNYTMQEPFMLSPERTHGKSPYRYNFGRIYERLLERAGLSANFHDLRRTFASLHVSKGTS 303

Query: 304 AHELMATYG 312
            +++    G
Sbjct: 304 VYKVAQWLG 312


>gi|138558|sp|P27077|VINT_BPP21 RecName: Full=Integrase
 gi|215450|gb|AAA32336.1| integrase [Phage 21]
 gi|16209107|gb|AAL09871.1| integrase [CRIM helper plasmid pAH121]
 gi|16209114|gb|AAL09876.1| integrase [CRIM helper plasmid pAH122]
          Length = 380

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 101/357 (28%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GK+ + ++     R       E+        A T    +R         
Sbjct: 13  PNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNE 72

Query: 63  -----SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   + +Y            L  NS               G    + 
Sbjct: 73  RLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRK 167
           IT   I   +++ K       +    +R++     ++   A +      P  + ++P+ +
Sbjct: 133 ITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R    E    F+S        +      L +G R  D C      + +++  I  +
Sbjct: 191 VNRQRLSLLEWQAIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++A   + 
Sbjct: 251 KTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTT 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    K G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 AFKKAKEKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 364


>gi|84496094|ref|ZP_00994948.1| putative phage-related integrase [Janibacter sp. HTCC2649]
 gi|84382862|gb|EAP98743.1| putative phage-related integrase [Janibacter sp. HTCC2649]
          Length = 381

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 92/344 (26%), Gaps = 26/344 (7%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           E+   G     +    GR+    +        +++  +T S     Y++ P+   TT+  
Sbjct: 30  EKRPDGVWRARYYDAAGRQH-ARHFRRKVDAKSWIDEVTASIVTGNYVD-PKVARTTVSD 87

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
               +     +G+   ++      +   I    G      +    +++   +      PS
Sbjct: 88  WCDSWL--VGYGTRRKSTVRQAAVHVKVIKADFGSTPLSAVKPSDVKAWTVTLGERYAPS 145

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +          +   AV    +  +PC     P +  +     T E +            
Sbjct: 146 TTYAMYRRFAQIMSDAVHDGILQKSPCSRRTSPPQARQRPHVATTEQVWALHDVMPA--H 203

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-------L 244
            R+A     + GLR S++    VQ +      +  Q     + ++               
Sbjct: 204 LRVAILLGAFVGLRVSEAAALRVQDVDYMRGVVTPQIQYPDVPLKSEMSMTAVPMPSELA 263

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVN--KSAHGVRKFSATIS 297
           L ++              +          +           G+      H +R + A++ 
Sbjct: 264 LLLSANHAMYGGTTVVTAEDGRATTPYAIERAIRAKRGQVPGLPEGFRFHDLRHYLASLL 323

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK---GADRIRLGIKNSR 337
             +G     +       T      TY      AD          
Sbjct: 324 IASGLDVKVVQTRLRHATATTTLNTYGHLWPDADESSRAAVAVA 367


>gi|254556905|ref|YP_003063322.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
 gi|254045832|gb|ACT62625.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
          Length = 387

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 96/382 (25%), Gaps = 57/382 (14%)

Query: 16  TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            ++GK           G+R        S  + A   A +    K           TT   
Sbjct: 6   KKNGKWQVRVSYYDEFGKRHFKNKNGFSRKVEAEAWANSLELDKFNNSIGLVDTTTTFYA 65

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------- 126
             S + ++  +G LA  +   +     QI    G+     +T    +  +          
Sbjct: 66  YYSHWLETYKFGKLAQITEQEYRYTLRQIRELLGNIKLNSMTRTRYQQFLNDFTHGNVEQ 125

Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                       H+ +S  +    +      AV    +  + C   E    K +  +   
Sbjct: 126 RAKRHLTGDQPYHSKASVQKLHGHIHAAVIDAVADGLIKSDFCTHAELGGHKGKDAQLKF 185

Query: 176 KEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +               RL           L +G+R ++        +     +I+  K+
Sbjct: 186 LDVKDMKILANEVNKNIRLTSTGKSMIYTGLMTGMRVAEVSALTWSDIDWKTKTIRINKS 245

Query: 230 GTIITVELPDGFM------------------------KLLAMTPIGKETFFINNDKQKMN 265
              +  +                              ++           F+NN  +   
Sbjct: 246 WDYVYGQKFKRTKTESSIRKISVTDELLNHLKQLRSLQIQKNLDNPDHMVFLNNRGRIPT 305

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323
                +  K   T   + + S HG+R   A+     G     +    G K        Y 
Sbjct: 306 PGACDLLLKNYHTTLEIKRISFHGLRHTHASSLLYCGVKMEYISKRLGHKNSSITRNVYA 365

Query: 324 KGA--DRIR---LGIKNSRRIS 340
                D+ +     +    + S
Sbjct: 366 HLLTEDQKQEESRTLNALAKFS 387


>gi|163855247|ref|YP_001629545.1| putative integrase [Bordetella petrii DSM 12804]
 gi|163258975|emb|CAP41274.1| putative integrase [Bordetella petrii]
          Length = 328

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 28/321 (8%)

Query: 11  VTKERTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPR 65
           +  ++ R     Y F   +  HG R+R        +  A  +      S       +   
Sbjct: 3   IYYDKVRR---RYRFEFDQVIHGNRVRATKLLPKAWNQAQAAQFDREESGRLYAIAHGIE 59

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI-TTKHIRSGVE 124
           K+   +   +  Y  S     L  + + +   +               +       +  E
Sbjct: 60  KQIPLIDTAVKHYLDSKKH--LKSHMQAA--RHLFAAAPYYEGKRMDGLADVATEMAEKE 115

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S    P++  Q +  +R   +   + + + +    +           R +          
Sbjct: 116 SGNWKPATIKQRIALIRAACRLLWKDKRMDMQDPAAHLTMPEVKNERRNYLTRPEMLRMC 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +  + R       YSG+R  +        +  + F +   K G    V +       
Sbjct: 176 RKIKNRRARAILLIAFYSGMRRGEIWS---AAVVGDRFILADTKNGEPRQVPIMPKVA-- 230

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGAT 303
                     +   +    ++     IW K  A   G  + + H +R  +A+    AG  
Sbjct: 231 ---------HYARKHLPPVISYRSLMIWLKNGAKAIGRPDLTLHDLRHSTASSMVRAGVP 281

Query: 304 AHELMATYGWKTVDQAETYTK 324
            + +    G K+      Y  
Sbjct: 282 LYTVGRVLGHKSTASTARYAH 302


>gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter
           sulfurreducens PCA]
 gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens
           PCA]
 gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400]
          Length = 457

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/301 (9%), Positives = 72/301 (23%), Gaps = 47/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              ++++          +  +  ++  +  Q  R   +    ++TT  ++  +       
Sbjct: 141 WDEVMAKLAAEIKVRHYSRKTLQTYAKWCRQFQRFLKNKPPVELTTADVKEYLTWLAVKC 200

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQ------------------------------------ 150
               S+  Q   S+  LF+ A+++                                    
Sbjct: 201 NVAASTQNQAFNSLLFLFRHALKRDFGELRDVPRAKKSLYVPVVLSRAEIDAILAHLYHP 260

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             + +           +   +R           +   +G + R                 
Sbjct: 261 HGLIVKLLFGCGLRLFECLQLRVRDFNFDAGILTVHGKGKKDRTLPLPESILNDLQRQMR 320

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF- 269
           R    H ++             +  + P    +L+      ++         ++      
Sbjct: 321 RVKELHEKDLEQGYDGVFLDDAMEKKYPKAPKELIHQWFFPQKDLTPVEANGQLRRAHVH 380

Query: 270 ----SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                        KA + K  +AH  R   AT    A      +    G  ++     YT
Sbjct: 381 ESLLQKALYLAVRKAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYT 440

Query: 324 K 324
            
Sbjct: 441 H 441


>gi|325453286|gb|ADZ13589.1| integrase [Cronobacter phage ENT39118]
          Length = 392

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 95/340 (27%), Gaps = 24/340 (7%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYI 61
            +    T  G I + FR   +G++ RL                 G            +  
Sbjct: 27  GLGIRITPKGVISFQFRYRFNGKQHRLGIGRYPEISLRDARLKVGEYKGVLEAGKDPKVF 86

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTK-HI 119
               +   TL   +  + ++    +L  +++  ++    D++           I     +
Sbjct: 87  KVQIRSRPTLHDCLRYWWENYVLIALRESTQNVYKRLVLDEMEGVFEGIPIEDIHVSTWV 146

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
               E     P  A + L  +R    W  R++Y+  +  L +   +   +     T    
Sbjct: 147 EFFTEHEHANPKKARKLLVHLRGAIDWCSRRQYIENSSLLKLSPREFGKKASVGETVLTY 206

Query: 180 QQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +Q    W E        S  RL    +LY             +            +    
Sbjct: 207 RQLAQIWLETDKTTATSSTKRLVKALILYGARNSEMREALSHEFDFVENIWTLPAEKSKT 266

Query: 233 ITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
             +     F ++L +                 +    ++    + + +    +  + N +
Sbjct: 267 DKIIRRPIFKQVLPLLQEATAGGKDILFPGAYDRDAPLSIGSTTRFIRLLRDQLNIGNFT 326

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AH  R+  AT  ++ G   H +    G         Y K 
Sbjct: 327 AHDFRRTLATRLSEEGVAPHVIEKMLGHDLGGVLAIYNKH 366


>gi|307694226|ref|ZP_07636463.1| Phage integrase [Ruminococcaceae bacterium D16]
          Length = 312

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 85/311 (27%), Gaps = 40/311 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR---- 126
              +  + +     ++   +   ++   +   I + G+   +K+TT+H++   +      
Sbjct: 2   ASWLRTWYELYAKPNVRTATANRYKLIIETYTIPRIGNIKLKKLTTRHLQKLYKELLECG 61

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       + ++       +      AV++  +  NPC     PK +   ++    
Sbjct: 62  RIHVGKNQDKGLSTTTVHSVHLMLHCALDRAVKERLIPRNPCEDYIVPKPRKLEMKILPP 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------ 224
           E ++ +             F   L SGLR  +        L      I            
Sbjct: 122 EHIKAYLDAAEARG-LLPMFYLELVSGLRKGELVALRWDDLDIQQRVISVSKQYVRNPDG 180

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKA 275
                + +   ++  V +P   + LL                       +        K 
Sbjct: 181 SLELTRPKTENSVRLVSIPQTAVDLLIQEHSKHPDSPYMFPSPLTGEMYHPDSVVNLHKK 240

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR-LG 332
               AG+     H +R   AT +   G     + +  G         TYT    + +   
Sbjct: 241 ILMDAGLEHLRFHDLRHTFATTALQNGVDVKTVSSMLGHFDAGFTLRTYTHATRQKQDEA 300

Query: 333 IKNSRRISSVV 343
            +        V
Sbjct: 301 AQTMGNFMEQV 311


>gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
 gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492]
          Length = 409

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 90/297 (30%), Gaps = 28/297 (9%)

Query: 69  TTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
            TL  L+  +            A+ +  ++   +  +           D  + ++  + I
Sbjct: 108 MTLLKLLDRHNGEMKARVGVDRALTTLSTYLFTYRTLSEFIKAKFKVPDLVFGQLNEQFI 167

Query: 120 RSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R   +     + +   +   +L  ++ + + A ++ +         + PK+K    +  +
Sbjct: 168 RDYQDFILLEKGYAVDTLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKETTPKALS 227

Query: 176 KEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +E+ ++ +       +      R  F F  Y+G   +D+     ++L  +       K  
Sbjct: 228 RENFEKLRDLEIPEKRRSHVITRDLFLFACYTGTAYADAVSITRKNLFRDDEGSLWLKY- 286

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                    G +KLL                      +        K+    AG+  +  
Sbjct: 287 -QRKKTDYLGRVKLLPEAVALIEKYRDDTRETLFPPQDYHTLRANMKSLRLMAGLSQDLV 345

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            H  R   A++   + G     +    G   +   + Y +   +     ++  R   
Sbjct: 346 YHMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKK--LFEDMDRFVE 400


>gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 353

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 78/274 (28%), Gaps = 38/274 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++ E+  + H  SL+  ++ ++              +    +T +I            
Sbjct: 100 EEMLKEFL-TIHTSSLSDATKKNYRIALINFFGFIDKQNEDDDSTSYI------------ 146

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                       F+  ++                   E ++ +              G++
Sbjct: 147 ------------FRIELKNWGGLRGKSGQKLPSYMNEEEVQRFLNGIETYPFKHQDLGAR 194

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RL  + ++Y+G+R  ++    ++ +  +      Q  G      +     K +      
Sbjct: 195 NRLLLKTIIYTGIRVGEALNLKIKDIMLDGEFYVIQVKGKGNKPRVVMIKAKNIHSDFGA 254

Query: 252 KETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
                         F N+  +K+     S   +      G+ K    AH +R   AT+  
Sbjct: 255 WINSRPLEVENELLFCNHKAKKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLY 314

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                   +    G  ++D +  YT    +    
Sbjct: 315 QKSQDLVLVQEALGHASLDTSRIYTHFDKQKLKA 348


>gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 101/323 (31%), Gaps = 34/323 (10%)

Query: 51  LTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRK 105
           +     +  Y + P     T +    + ++R+   + ++   + ++       F     +
Sbjct: 1   MNEMERRLLYADKPEPVKKTEEQNKYVKKFREEREFDNIKKTTILNDIVRLRVFLAFCEE 60

Query: 106 SGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-------AI 155
                +   T   ++        R  + ++  ++   ++V ++    + +          
Sbjct: 61  LEMEPFELSTHDFVKFFNYLTNRRNCSITTQNKYFNLLKVFYRLLRYENFREFEIESNNR 120

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAG 213
                 E+    T     +TK   +   S      +  L    L  +G R S+  + R  
Sbjct: 121 KRFTKYEKKHYDTIDFETYTKILKEVVLSNSRTKVRDALLIRVLWETGCRRSEALNIRYK 180

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKM 264
              L+   F I+  KT    TV + +  +K++                    +  + +++
Sbjct: 181 DCDLEKGRFRIRDTKTYEERTVVVSEDTLKIVIDYIKQNLRRDADDFIFQNEVTFNGKRV 240

Query: 265 NATQFSIWFKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                +  FK    K         G     H +R   AT   D G     +    G K++
Sbjct: 241 KPDWVTAVFKKAVNKLKEDGAIPKGRRVVVHSLRHGRATDLLDKGVPIDIVKEILGHKSL 300

Query: 317 DQAETYTKGADRIRLGIKNSRRI 339
           +    Y+   +R    +   +++
Sbjct: 301 ETTLYYSHSKERKEKLLDEIQKL 323


>gi|323495077|ref|ZP_08100166.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
 gi|323310734|gb|EGA63909.1| phage integrase family protein [Vibrio brasiliensis LMG 20546]
          Length = 440

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 105/391 (26%), Gaps = 56/391 (14%)

Query: 9   PFVTKERTRHG-KIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPK-----REY 60
             +  + T  G K   Y +K +GR  ++ +    E T   A   A   +           
Sbjct: 34  RGLGLDVTPSGDKTFRYVQKVNGRNVKVTIGKFPEITVELARSHARDIAQQIAGGINPNV 93

Query: 61  INSPRKKPTTLKWLISEYRK----SAHWGSLAVNSRIS----FESYFDQIIRKSGDFDYR 112
               ++   T   L + Y +        G    +S  S    +  +      K G+    
Sbjct: 94  EKRKKRNADTFNDLFTIYEELFKLDIKAGKRRESSLTSSKTLYRLHLK---AKVGNTPID 150

Query: 113 KITTKHIRSGVES-RKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
             T    +  +         S     LT ++ +F              L           
Sbjct: 151 NFTKADAKQLLNRILSEKGYSLHNHTLTLLKSMFN--RADVPTNPFGTLKKIDESYHRRQ 208

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--- 227
                +E  + FKS   E    +     LL +G R +       + +     +       
Sbjct: 209 RTLSPEELQRLFKSLDQEQEVYQDCVLLLLLTGQRKATVLSMEWREINRENQTWSIPTSK 268

Query: 228 -KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATK 279
            K+     V L    M +L                 + + +           +++    +
Sbjct: 269 IKSKKPHVVPLTSEAMAILERRAKSSPRGEEFVFPSRRSQSGHITDKSGKGGFWRRITER 328

Query: 280 AGV-------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIR 330
           AG+       N   H +R+  AT    +G +        G   V    + Y     D +R
Sbjct: 329 AGLYNSDPEKNLQVHDLRRTLATYQVSSGGSLQATSKLLGHSNVSITSDVYAHLSVDIVR 388

Query: 331 LGIKN-------------SRRISSVVDSDDP 348
             ++                ++   + S +P
Sbjct: 389 QELEQTTNYMLGGQESSDLDKLKQEISSLNP 419


>gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606]
 gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606]
          Length = 409

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 20/278 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE 124
           L  LI E +K      +   +  ++    +     I    K  D  + ++T   I    +
Sbjct: 114 LDILIRE-KKEHIGIDIKRETISNYYTTRNNLRTFIEDKYKVEDLSFSQLTENFIYDFRD 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     + ++++ + A R+         +V+  +   +  +   +  + 
Sbjct: 173 YYLNKLGFQESSFYAVASQIKIVCRVAYREGLADTLLFANVKIARGDKKLPKALDRRSLD 232

Query: 181 QFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIIT 234
           +  +        E    R  F F  ++G    D    +    ++++  ++  +     I 
Sbjct: 233 KLMNTHFGELEEEMETARDLFVFACHTGAAYCDLMGLSKTHLVRDDEENLWMKFNRKKIG 292

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           V      +                    +M    +  + KA   + G+    + H  R  
Sbjct: 293 VLCRIKLLPEAIRIIEKYRGEERERLLPQMKYATYQSYLKALRLREGIAFPFTTHTARHT 352

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT+   + G     +    G   V   E Y K   + 
Sbjct: 353 FATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQK 390


>gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 87/286 (30%), Gaps = 29/286 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYR--KITTKHIRSG 122
            T++  I E  ++      +  +   +++   ++        G  D    ++T + IR+ 
Sbjct: 112 GTMREGIKE-METLAGIDYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAF 170

Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               K        + ++++   +     A+ +E++  NP    +  ++        T ++
Sbjct: 171 DIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDE 229

Query: 179 MQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R  F F  ++GL  SD      ++L  +       + G +   
Sbjct: 230 LQTVMKKKFTIPRLELVRDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLE 289

Query: 236 ELPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                            + +L                  M   + + + K  A   G+ K
Sbjct: 290 HRRKASSISNIPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKMNSYLKEIADFCGIKK 349

Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + H  R    T           ++    G  +    + Y +  +
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|153212038|ref|ZP_01947855.1| integrase [Vibrio cholerae 1587]
 gi|124116834|gb|EAY35654.1| integrase [Vibrio cholerae 1587]
          Length = 412

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 100/363 (27%), Gaps = 65/363 (17%)

Query: 23  YYFRKGHGRRIRLPYPHEST---FIPAYMSAL------------TGSTPKREYINSPRKK 67
           ++  KG  +R  L  P          +  +A+                  ++      KK
Sbjct: 18  WFMYKGKRQRESLKCPPTPKNIKLAASRRTAICHAIQTGQFIYKEWFPESKKANQYSDKK 77

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESR 126
             T+K L   +        +   +  +++    Q+     +     ++T + +    +  
Sbjct: 78  DITIKELFDRWLD-LKVIEVTPATIKNYQQRVKQVYWHLPETTLVSEVTQEKLLELRKRF 136

Query: 127 K--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +PS+A  ++ +++ +F +A+   Y        ++  K +    +P ++E+ Q+   
Sbjct: 137 TETCSPSTANTYMRTLKGIFSFAINSGYSDPALLNGIKELKTQKRKPQPLSEEEFQRVIE 196

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------------------- 217
                         +  +GLR  +      + +                           
Sbjct: 197 HCQHEQDANFWTVAVY-TGLRHGELMALAWEDIDLENGTITVRRNLTLEGRFKLPKTISG 255

Query: 218 ----------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
                           Q     +  +    ++  E      + +        T     D 
Sbjct: 256 ERTVNLLNPALAALKAQMKWTFMLPELEIDVLQREYGKLQRQFIRPVFSPSVTARYEVDN 315

Query: 262 QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
           +  +       +     +A +     +  R   A     AGA    +    G  +  +  
Sbjct: 316 RYYHHVSIWEKWNMLCKRAKLTYRKPYQTRHTYACWMLSAGANPTFIAKQMGHSSAKEVY 375

Query: 320 ETY 322
           +TY
Sbjct: 376 QTY 378


>gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16]
 gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16]
          Length = 372

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 21/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVE------ 124
              ++ Y+K+             +E  +       G    + +I         E      
Sbjct: 93  GDFLAYYKKTLRKHDQK------WEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAK 146

Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  + +SA+ + ++ R   K   R + +  N    +E+ + +       + +++
Sbjct: 147 QLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVDEL 206

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +      +    + A  F   + LR SD      + + +     K   T T  T     
Sbjct: 207 YRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDI 266

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
             +   A+  IG          + +         K     AG+ K  + H  R+  AT+ 
Sbjct: 267 IPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQ 326

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
           A AG     + +    K++   + Y K  D   R      
Sbjct: 327 AAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|221632161|ref|YP_002521382.1| transposase [Thermomicrobium roseum DSM 5159]
 gi|221156797|gb|ACM05924.1| transposase [Thermomicrobium roseum DSM 5159]
          Length = 316

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 89/300 (29%), Gaps = 40/300 (13%)

Query: 83  HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
              SL   +   +ES    +II   G     K+  + +++          +  S      
Sbjct: 5   RRTSLRPRTWAGYESIVRVRIIPALGRLPLDKVEPQVLQAFASQLLTQGLSVQSVQNTHP 64

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            +   F  AV+   +  NPC  V+  +     +R  T  ++ +  +  ++     L    
Sbjct: 65  LLHRPFADAVKWGLLGRNPCDLVDLSRASRLQLRALTAPEVARLLATCADDPLGPLVTVA 124

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------------------------- 231
           +L SGLR  +        +          ++                             
Sbjct: 125 VL-SGLRLRELLALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTAASRRRVPLSPLA 183

Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                        +      T    +  F +     ++  + +  F     +AG+     
Sbjct: 184 LEALRRQRRHQVEWRLAAGPTWAEGDWVFTSVRGVPLDPAETTRRFHRLLERAGLPHRRF 243

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R  +A++    G     + +  G  TV    + Y++      L  + + R+  +V +
Sbjct: 244 HDLRHTTASLLLADGVHPKVVASILGHSTVQVTLDVYSRVTPG--LARQAAERLQQLVAN 301


>gi|29376747|ref|NP_815901.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227517113|ref|ZP_03947162.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227555267|ref|ZP_03985314.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|307285221|ref|ZP_07565367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|29344212|gb|AAO81971.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227075427|gb|EEI13390.1| bacteriophage integrase [Enterococcus faecalis TX0104]
 gi|227175589|gb|EEI56561.1| bacteriophage integrase [Enterococcus faecalis HH22]
 gi|306502922|gb|EFM72183.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|315574659|gb|EFU86850.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315581034|gb|EFU93225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 382

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 102/368 (27%), Gaps = 52/368 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +R    V K+  R     +YF         G+RI+       T   A   A+        
Sbjct: 1   MRRIANVYKDEKRG---TWYFSLTLGYDRFGKRIQPTRRGFKTQKEAK-DAMEELKKNYS 56

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +  T +    +Y    +       + +  +    + +   G     KI   HI
Sbjct: 57  DSQEIYLQGITFREFYKKYFFPWYKLGTIEKTYVKTDKTLKRALAYFGKMQMEKIRPIHI 116

Query: 120 RSGVESR-----------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPK 165
           +   +             K  P S          +R++FK A+  E +  NP  ++ + +
Sbjct: 117 QEFQQFLVQECFVTNKEGKIRPLSNNYIKQIFNKLRIIFKRAMVLEVIDENPVDTIGKIR 176

Query: 166 RKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            +   +  WT ++             + +  +    FL  +GLR  +        +  + 
Sbjct: 177 TQRSVVAFWTVDEFKKVYNCSYRCDFQEAFYKRMMRFLFVTGLRSEELFALQWPDIDFHK 236

Query: 222 FSIKTQKTGTIITVELPD-----------------------GFMKLLAMTPIGKETFFIN 258
            +    K+  I T    D                          K    T      F   
Sbjct: 237 GTCCVNKSLYIRTRTDYDFSDTKNASSIRTITLDKQTIVDLREWKETQKTIGDDLGFIFT 296

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            D    +   F    K  A  AGV     HG+R        +     + +    G  +V 
Sbjct: 297 FDGLPPSPKTFLGRVKKLAEIAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVK 356

Query: 318 QA-ETYTK 324
              + Y  
Sbjct: 357 TTLDKYGH 364


>gi|254976738|ref|ZP_05273210.1| phage integrase [Clostridium difficile QCD-66c26]
 gi|255094122|ref|ZP_05323600.1| phage integrase [Clostridium difficile CIP 107932]
 gi|255315873|ref|ZP_05357456.1| phage integrase [Clostridium difficile QCD-76w55]
 gi|255518534|ref|ZP_05386210.1| phage integrase [Clostridium difficile QCD-97b34]
 gi|255651653|ref|ZP_05398555.1| phage integrase [Clostridium difficile QCD-37x79]
 gi|260684690|ref|YP_003215975.1| phage integrase [Clostridium difficile CD196]
 gi|260688348|ref|YP_003219482.1| phage integrase [Clostridium difficile R20291]
 gi|306521455|ref|ZP_07407802.1| phage integrase [Clostridium difficile QCD-32g58]
 gi|260210853|emb|CBA65958.1| phage integrase [Clostridium difficile CD196]
 gi|260214365|emb|CBE06748.1| phage integrase [Clostridium difficile R20291]
          Length = 388

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 98/360 (27%), Gaps = 50/360 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+ IR  +  ++         L     +    +       TL+     +        L 
Sbjct: 30  DGKPIRKEFYGKTQ--KEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFEYRIKDLK 87

Query: 89  VNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVL 143
             S   +ES +   I+    G+   + +   H++        +     +  Q  T ++  
Sbjct: 88  PKSFERYESIYRNYIKDTDLGNVKLKDLRVSHMQKYYNRLLDSNKSIPTIRQINTKLKTC 147

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              A +Q  +  N C  V  P  K E        + Q+      EG +  + F   L +G
Sbjct: 148 LSEAEKQGLIQRNYCTMVNIPVEKKENRLEILTLEQQKNFIKAIEGHKLEVLFLVALGTG 207

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           LR  +        +     ++  ++T         +G  +L  +    K +         
Sbjct: 208 LRLGELLGLKWFDIDFKNSNLTVKRTLQRTYFIDKNGNRELKVLEQEPKTSNSYRTVPIP 267

Query: 264 MNATQ-------------------FSIWFKAKATKAGVNK-------------------- 284
            +                      +         + GV                      
Sbjct: 268 KDVLNKLKEHKVNQNVDILKAGELYRNDNYVFCNELGVPIDDKRPLRNLKSILSSLDIEP 327

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSV 342
              HG+RK  AT   +       +    G   +      YT+  +  +  ++   ++  +
Sbjct: 328 IKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKK--VEAVEKLDKI 385


>gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   + S    + +         D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGIDIKEGAIHGYHSTRIHLQKFIQRKYKVTDLAFSQLTENFIYEFGQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+     T ++ + + A R+    +      +  K      +   +   +
Sbjct: 173 YFLGECGFQESTFYNAATHLKTVCRLAYREGLADVLLFDKAKISKGDKRLPKALDRGAFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLQFEDLEEEMETARDIFLFACYTGAAYCDLMELNKSHLVRDDEGCLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT    + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATFITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246]
          Length = 322

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 87/308 (28%), Gaps = 59/308 (19%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L+   R +      ++ +  ++  + ++ IR  G     ++    + + +     T    
Sbjct: 9   LLDRVRHACRVRHYSIRTEDAYHDWAERFIRFHGIKHPDRMGEPEVNAFLTDLAVTRNVA 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q L ++  L+   + +    +    +  R         P      +         
Sbjct: 69  ASTQNQALCALLFLYAVVLERPLNELMVVRAHRRV------RLPVVMSRDEVRAVLAELE 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM 247
              RL       SGLR  +  R  V+ ++ ++    ++  K        LP     LL  
Sbjct: 123 GVHRLVALIQYGSGLRLLECLRLRVKDVEWDLNQLVVRGGKGDKDRRTMLPQVCRGLLEW 182

Query: 248 TPIGKETFFINN---------------------------------------------DKQ 262
                      +                                              + 
Sbjct: 183 HLADVRKLHQEDLANGLGAVYVPKAFAAKNPAAPTAWAWQYVFPAHRLSVDPRSGAARRH 242

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++ +  +         AGV+K  ++H  R   AT   ++G     +    G ++V+   
Sbjct: 243 HLHESGMNRVLADAVRDAGVDKRVTSHSFRHSFATHLIESGTDIRTVQELLGHESVETTM 302

Query: 321 TYTKGADR 328
            YT   ++
Sbjct: 303 IYTHVLNK 310


>gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
 gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 103/297 (34%), Gaps = 26/297 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
                SE+ +    G++   +   +     ++   S +    ++  +  ++ +     T 
Sbjct: 11  FHEYFSEWIEIYKRGAVRPVTYQKYLMTLQRLTELSPNLKICELDKRKYQTLLNDYAKTH 70

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     A+ +  + I+P     ++      +  +  ++ ++Q      
Sbjct: 71  ERQTTMDFHHHLKSAILDAMDEGLLTIDPTRKVIIKGKPVSDKKNKFLSQFELQSLLKSL 130

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +   +P   +  LL   +GLR S++     +        +K  KT      E   G  K 
Sbjct: 131 NLTDKPNWDWFILLVAKTGLRFSEALALTPKDFDFECQKVKISKTWNYKNAEGGFGETKN 190

Query: 245 LAMTPIGKETFFINNDKQKMNAT----------------QFSIWFKAKATKAGVNK-SAH 287
           L+     +    +N   ++++                    +   K    KAGV   SAH
Sbjct: 191 LSSKRTIQIDIQLNTQIERLSKDLADDEPIFVQGRVFNSTVNNRLKVLCKKAGVPIISAH 250

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
            +R   A++   AG +   +    G  ++   + TY        L  +++ +I S +
Sbjct: 251 CLRHTHASLLIFAGVSIASIAKRLGHSSISTTQETYLHII--KELESQDNDKIMSHL 305


>gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis]
 gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis]
          Length = 117

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
             ++      + L M        F N   + M    F    K  A  AG+ K  S H +R
Sbjct: 7   HWLQRYTTEGRPLLMGGRQSAMLFPNRRGEPMTRQAFWYRIKHYALLAGLPKLPSPHTLR 66

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
              AT   + GA    +    G   +   + YT  A + RL
Sbjct: 67  HAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVA-QARL 106


>gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 323

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 83/314 (26%), Gaps = 35/314 (11%)

Query: 60  YINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
            +  P  +P T    +   +SE+  +  +  +   +  +  +     I  S     +++ 
Sbjct: 8   KLKKPEPEPITETKEMNKWVSEFIDAREFDGIKKTTITNDVTRLRVFIDFSTQKLNKELD 67

Query: 116 T-------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-------VRQEYVAINPCLSV 161
                   K      + +    ++  ++   ++V +K          +++          
Sbjct: 68  QLQNVDFIKFFNYLDKEKGIKRNTQKRYFDLLKVFYKINRLSNFDEFKEDSEERKRFKRC 127

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220
           E            TK      +       +  +    L  +G R S+        +  + 
Sbjct: 128 EVAHYDFIDRETLTKIIDMIAEGRSQTKVRDVIILRMLWDTGCRASEVVNLTYFDVDMDT 187

Query: 221 -IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-------TQFSIW 272
               ++  K     TV      + LL      +      +   K             S  
Sbjct: 188 GKIKVRNTKGKVERTVGCSKDTLNLLKYYSNHQIYKTPKDHIFKNRKGEAKIEVNWISEV 247

Query: 273 FKAKATKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           F+    K               H +R   A    D G     +    G  +++    Y  
Sbjct: 248 FRKAVRKLKESGDIPNNKKLVVHSLRHGRAVDLLDKGFPIDIVKEYLGHSSLETTLFYAH 307

Query: 325 GADRIRLGIKNSRR 338
             +R +  + +  +
Sbjct: 308 AKEREKKMLDDIMK 321


>gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21]
 gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21]
          Length = 392

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 21/254 (8%)

Query: 91  SRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFK 145
           +  +  +   Q I   G     + +IT + IR           + ++   +   +R    
Sbjct: 134 TWRNQRNCLRQFIDFWGSPLIPFHEITQEKIREYDAYLRKLDKSHNTITGYHKVIRKFLN 193

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGI-------RPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            A +Q  + +NP   +                 +       ++           R  F F
Sbjct: 194 AAEKQNIIKVNPYNGLTFRYVPGSRRPLEQVELKRLMDIYYKKPLMHSVREVLRR--FLF 251

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              +G+R SDS R     +  N  + K +KT               L +    +   F  
Sbjct: 252 SCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIPLPKAALDLVEGQEGYLFTK 311

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                      + + K  A  AG+ K  + H  R    TI  + G     L    G    
Sbjct: 312 FAD-----KTINEYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGDIKSLCDIMGHSDT 366

Query: 317 DQAETYTKGADRIR 330
              E Y K +D+ +
Sbjct: 367 RITEIYLKMSDQRK 380


>gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
 gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13]
          Length = 414

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 99/355 (27%), Gaps = 54/355 (15%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
                 Y+         R             +W ++ Y       SL++ ++  +++   
Sbjct: 63  KKMKEKYLKRKARKNIIRNTEIMNLSVYEFFEWALNIYL--LKNPSLSIVTKNGYKNEVK 120

Query: 101 QIIRK--SGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           ++          + ++T K I   +E      K   S+  +    +  L+K A+++E V 
Sbjct: 121 KMKNYAPFKSISFAELTKKDIEHYLEYLFIIEKLASSTIAKIRVVLGTLYKVAIQRELVE 180

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N     E  K K    +  +KE  + F     E S+ +L F  L++ GLR S+     +
Sbjct: 181 YNLIYKTEPIKVKKTKRKALSKEKAKIFLEAL-ENSEYKLEFYLLIFLGLRKSELLGITI 239

Query: 215 QHLQNN---------------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
            ++                         +             + +L      +      +
Sbjct: 240 DNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLAHRKFPLIPILTDFLTERIDRIKED 299

Query: 260 DKQKMNATQF--------------------------SIWFKAKATKAGV-NKSAHGVRKF 292
                N                              +        K  + + S H +R  
Sbjct: 300 KIFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELDKILKKIELEHLSIHELRHT 359

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
            AT+    G    ++    G   +      Y    +      +   ++   ++ +
Sbjct: 360 CATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN--FEVIGKLEKALEKN 412


>gi|227496708|ref|ZP_03926983.1| integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833805|gb|EEH66188.1| integrase [Actinomyces urogenitalis DSM 15434]
          Length = 415

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/390 (13%), Positives = 109/390 (27%), Gaps = 57/390 (14%)

Query: 2   TPSLRLPPFV--TKERTRHG---KIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGS- 54
                LP  +   +   R G   +  Y  R    GR++ +      T   A      G  
Sbjct: 23  RAKKDLPAGIAMHRAAGRDGQPDRWRYRVRLQWEGRQVSIGLFDTLTDAKAARDRAAGEI 82

Query: 55  ------------TPKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRISFE 96
                          R+     R +  T++    ++ K           + +  +  S+ 
Sbjct: 83  ASRTFVPPYQRRAEARKKAEEERLQAVTVEQWSQQWLKRLQSGQTRNGKARSSGTITSYR 142

Query: 97  SYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--V 153
           S  +  ++   G      +T K +   + +      +    L ++R +F  A+R E   V
Sbjct: 143 STLNAHVLPALGHVRLADVTRKDVDGLLATVADQSGAWNNVLRTVRAMFGEAIRAEVGGV 202

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            +NP  + E+P R +E  R    E +        +G    L      +  LR  +     
Sbjct: 203 EVNPVRAPEKPVRLSEEGRTLEPEQVAALARAMPDGL--GLTVLLAAWCALRQGEVLGLQ 260

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-------------------- 253
            + ++      +                   L      ++                    
Sbjct: 261 RRDVKGLGKDGEAVLQVRRQWNSKTHPPTYTLPKEEKVRDVAIPPTLVPLLAEHLKGMRD 320

Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                         KQ ++    +  +     +       H +R    +  +++GAT  E
Sbjct: 321 KDGQAPLFRSPRWPKQPLSHQALTRAWDEARRQVVPGFRFHDLRGVGLSYFSESGATVEE 380

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNS 336
            M   G   V  A  Y     R +  +  +
Sbjct: 381 TMTRGGHSDVKAAMRYQHARMRRQQALAAA 410


>gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRRPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|325663344|ref|ZP_08151794.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470798|gb|EGC74028.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 463

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 109/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R GK  +IY ++   G+R +    +++               K+E  +   +K  TL 
Sbjct: 5   RERKGKFNVIYNYKDDSGKRKQKWETYDTKAEAKKRK--REIEYKQEMGSLVVRKCNTLS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----- 126
            L++EY         A+++     S     I    G     +I T+ +    +       
Sbjct: 63  DLLTEYVSLYGKEKWALSTYEGNVSLIRNYIEPMIGTVKLSEINTRFMERFYQGLLQTKA 122

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         + S+       +R  F+ A++ E +  NPC+    PK K++    W
Sbjct: 123 VGNPAKGNKRNEYVSASTVRDIHKLLRNCFEQAIKWEMLEKNPCIYATVPKHKSQKREIW 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T E +        E  + +LA        +R  +        +  +  +I+  +    I 
Sbjct: 183 TAETLMYAMDV-CEDQRLKLAINLSFSCSMRLGELLGLTWDCVDISPEAIEENRAYVYIN 241

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K    +   K     +     F           
Sbjct: 242 KETQRVKKESLKDLEGKDVLLVFPSQHKTNTTVQILKTPKTESSIRKVFLPKSVANMLVE 301

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K    +  +     H +R  
Sbjct: 302 WKAEQDEVKEVLGEEYIDYNLVMATTFGNPIGTGAIRGQLKKLIEEHNLPPVVFHSLRHS 361

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   VD   + Y+   D  R 
Sbjct: 362 SVTYKLKLNGGDIKAVQGDSGHSQVDMVTDIYSHIIDEDRR 402


>gi|306846318|ref|ZP_07478878.1| shufflon-specific DNA recombinase [Brucella sp. BO1]
 gi|306273245|gb|EFM55118.1| shufflon-specific DNA recombinase [Brucella sp. BO1]
          Length = 301

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 89/291 (30%), Gaps = 9/291 (3%)

Query: 41  STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
           +T              +            TL  L+  Y +            I       
Sbjct: 2   ATIRKLRGRWQAQVRRRGMKPRCKSFDSKTLGSLLKRYAEEISPSKRGSAQEIQRLDVLQ 61

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE--YVAIN 156
           +            ++ + I S  + R     P++A++ L  +  +   A+R     +A N
Sbjct: 62  R--HDLAYRTLVGLSQQDIASFRDERLKTVKPATALRELAILSHVLDVAMRDWGYPLAQN 119

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGV 214
               + RP       R  T  + Q+      +G         +L   +G+R  +      
Sbjct: 120 VVKMIRRPTINNARSRRLTASEEQRILDACDDGKVECFLALVILAIETGMRRGEILGLKW 179

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             + +N   I    T    + E+P        +  + +      +    M+ + F   ++
Sbjct: 180 TDISHNRRVISLAMTKNGTSREVPLSQRAYTELMMLKQSETVDQSMPFAMSNSAFEQTWR 239

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +A V N   H +R  + +   + G    E+ +  G K +   + YT 
Sbjct: 240 RVLKRANVSNLKFHDLRHEAVSRFFELGLNIMEVSSISGHKELAMLKRYTH 290


>gi|295086000|emb|CBK67523.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 322

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 86/284 (30%), Gaps = 26/284 (9%)

Query: 78  YRKSAHWGSLAVN----SRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP- 130
           +  S     L  +    +  ++ S    + R  G  DF + K++++ I         +  
Sbjct: 29  FYFSRKIRELRESGHEGTARAYASSLRSMQRYLGKKDFPFIKLSSRIISDYQGKLLASGI 88

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKS 184
             ++   +L +++ LF+   R+  + +         K +    R      ++        
Sbjct: 89  CDNTIGFYLHNIKALFRKGCREMGLELPCPFRDISIKTEKTLKRSLDPVVIKTLSAIELE 148

Query: 185 FWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             S  S  R  F F  Y+ G+   D      +H+       +  KT  ++ V +     +
Sbjct: 149 KDSPLSLARDIFMFSFYTRGMSFVDIALLKKRHVFPGEICYRRHKTDQLMRVGINKEISR 208

Query: 244 LLAMTPIGKETFFINNDK--------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
           +L         +               +    +        +   G+      H  R   
Sbjct: 209 ILERYKNVPGEYIFPLFPAERDPYAGYRSAYHRIRYSLGKISRVIGLEFPLRLHAARHSW 268

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           ATI+   GA+ H +    G  +      Y K  D     +    
Sbjct: 269 ATIAKVNGASVHVIGECLGHTSEKTTRIYLKELD--HSALDAVN 310


>gi|291515632|emb|CBK64842.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 417

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 98/279 (35%), Gaps = 22/279 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESR---KHTPSSAIQ 135
              +  +   F   F  + R         D   R +  + ++   E+         +  +
Sbjct: 141 KEYSPATLQKFREVFAHVERYIRTSYNMQDIPIRSVDYRFVKQFEEALIVQGLKAITINK 200

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
            +  +R +  +A +  Y+  +P +    P ++ + +   T+E++ + +       +    
Sbjct: 201 IMQRVRQMVTFAFKCNYIQQDPFVEYR-PLKERKRLVFLTQEELHKLEHHHFAQKRLETV 259

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +  + F +Y+GL   ++     +H+    +    I   +  T   V +P        +  
Sbjct: 260 KNIYLFSVYTGLAYHEAQALQPKHITKGFDGRNWITLVRQKTDREVSVPLLPQAEKLIAW 319

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHE 306
             +     +  + +++  + + + +  A   G++K  + H  RK  AT I          
Sbjct: 320 FREFGSTDDYIQPRISNQKVNSYLREIADVVGIDKKLTHHTARKTFATTILLYNDVPIEV 379

Query: 307 LMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVD 344
           +    G   +   +  Y +  +  +    +  R+  V++
Sbjct: 380 VSKLLGHSNISVTQHSYAQVLN--KNISNHIGRLEKVLN 416


>gi|294102140|ref|YP_003553998.1| integrase family protein [Aminobacterium colombiense DSM 12261]
 gi|293617120|gb|ADE57274.1| integrase family protein [Aminobacterium colombiense DSM 12261]
          Length = 375

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 101/349 (28%), Gaps = 28/349 (8%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            +  E    GK  +  R    G  RR  L    +++   A +             +    
Sbjct: 25  GLILEIRPSGKKYWISRIWENGKERRRSLGSFPDTSAREARLR------NIELRTSFTPS 78

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES 125
              +   +I E+ ++   G LA           ++      G+     I++  I S   S
Sbjct: 79  SEDSFNTVIDEWLENRVDGRLAPGYARVIRLRLNKFIRPSLGNLSISDISSAKILSVCRS 138

Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            + T    +A +    +  +F++A+       +   ++    ++       T  D +  +
Sbjct: 139 IEETGIIETAHRVRQIIGQVFRYAIATGRAENDLTSALTGALKQAPVRHHATITDKEGIR 198

Query: 184 -----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234
                     G   R A  F +Y+  R  +   A    +  +    +      K      
Sbjct: 199 ALIQGMKAYSGIVVRHALFFSIYTFCRPGEVRSAEWSEIDWDKSEWRIPGEKMKMKRPHI 258

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGV---NKSAHGVR 290
           V L    ++ +                 + +    S    +      G    + + HG R
Sbjct: 259 VPLCSQCIETIESLKQFTGHQKWLFPSARNDGRCMSENTVRIALRTMGFENEDITPHGFR 318

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRIRLGIKNS 336
             ++TI  + G  +  +         +     Y      D+ R  ++  
Sbjct: 319 GMASTILNENGWPSDVIERQLAHIERNAVRAAYNHAEYLDQRREMMQWW 367


>gi|288906406|ref|YP_003431628.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325979468|ref|YP_004289184.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733132|emb|CBI14713.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           UCN34]
 gi|325179396|emb|CBZ49440.1| site-specific recombinase, phage integrase family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 421

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/407 (14%), Positives = 114/407 (28%), Gaps = 89/407 (21%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGST---PKREY 60
           VTK    +G I Y  R          G+++       +  + +    +T +         
Sbjct: 13  VTKTTKNNGTISYTQRGVYLGIDTKTGKKVT--SSITAKTLRSLDRKITQAKLDFEANGS 70

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119
                    T + L   +  S      + N+     +Y D  II K GD+   +I +  I
Sbjct: 71  TLRETVAINTFEELAEAWFSSFITWVSSQNTINRVRNYLDTYIIPKFGDYKPEEIKSADI 130

Query: 120 RSGVESRKHTPSSAIQFLTS---------------------MRVLFKWAVRQEYVAINPC 158
           +  V        +    L+                      +  +F + +    +  NP 
Sbjct: 131 QIWVNQL-----ARNSKLSVESGVKKSKKGCAKDFGAVLHKLSDIFDFGITNFELGHNPA 185

Query: 159 LSVERPKRKTEGIRPWT---------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +V+ P +     +                 +         + ++  + LL S LR ++ 
Sbjct: 186 NTVKVPPKPKSIKKRIMVLHDKELTIWLSFLETLPNTRANRRFKVICDTLLASALRINEL 245

Query: 210 CRAGVQHLQNNIFSIKTQKTGTI-------------------------ITVELPDGFMKL 244
               +Q L      I   KT                              V +P   ++ 
Sbjct: 246 LALDIQDLDFESCEIVVNKTLVWKAGNRKLGVRGEILCKNTPKTDAGNRRVPVPRETLQN 305

Query: 245 LAMTPIGKETFFINN------------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291
           L         +F  +                M         K + T+ G+     H  R 
Sbjct: 306 LKDFHNEMNLYFDKHELPRTNLIFPTIYGNYMCDRNERATLKKRLTELGLPDYGFHLFRH 365

Query: 292 FSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSR 337
             A++  +AGA   EL    G K++     TY + A + +   +   
Sbjct: 366 THASLMLNAGANWKELQTRMGHKSIKTTMDTYAELAPKKK--AEAVD 410


>gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 372

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 87/280 (31%), Gaps = 21/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVE------ 124
              ++ Y+K+             +E  +       G    + +I         E      
Sbjct: 93  GDFLAYYKKTLRKHDQK------WEFVYLHFFNFVGGKCSFEEIDVDLCNKFREYLLNAK 146

Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  + +SA+ + ++ R   K   R + +  N    +++ + +       + +++
Sbjct: 147 QLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVVKDYLSVDEL 206

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +      +    + A  F   + LR SD      + + +     K   T T  T     
Sbjct: 207 YRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDI 266

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
             +   A+  IG          + +         K     AG+ K  + H  R+  AT+ 
Sbjct: 267 IPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQ 326

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
           A AG     + +    K++   + Y K  D   R      
Sbjct: 327 AAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|76799083|ref|ZP_00781273.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77408898|ref|ZP_00785623.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
 gi|76585551|gb|EAO62119.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77172489|gb|EAO75633.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae COH1]
          Length = 390

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 113/388 (29%), Gaps = 56/388 (14%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           +T+ + + G +IY         K  G+++       +       +        +      
Sbjct: 5   ITEVKKKDGTVIYRASIYLGTDKVTGKKVTTKITGRTKKEVREKAKQEAIEFIKNGSTRF 64

Query: 65  RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
           +    T  + L + +  S    ++  N++++ E      +I   G +   K+TT  I+S 
Sbjct: 65  KATSVTSYQELATLWWDSYK-HTVKYNTQLATEKLLTVHVIPIFGAYKLDKLTTPLIQSI 123

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----- 169
           +       +           +     + + ++ V  + +  NP   V  P+   +     
Sbjct: 124 INKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKR 183

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL------ 217
                  +           + ++ R  +E  LY     +G R +++       +      
Sbjct: 184 VKHFENDELRTFFNYLNNLDKNKYRYFYEVTLYKFLLATGCRINEALALNWSDIDLDNAV 243

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                           +   +   +++    + +L      +                + 
Sbjct: 244 VHITKTLNYKQEINSPKSKSSYRDIDIDSRTVTMLKQYRRRQIQEAWKLGRSETVVFSDF 303

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N        +    +A V N   HG R   A++  + G    EL    G  T+  
Sbjct: 304 IHKYPNNRTLQTRLRTHFKRANVSNIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSM 363

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVDS 345
               Y+  +       K      + ++S
Sbjct: 364 TMDIYSHLS--KENAKKAVSFFETAINS 389


>gi|302385763|ref|YP_003821585.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302196391|gb|ADL03962.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 361

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/344 (11%), Positives = 91/344 (26%), Gaps = 38/344 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFR-----------KGHGRRIRLPYP-HESTFIPAYM 48
           M  + +LP          G                      +RI   +   + T      
Sbjct: 1   MPTAKKLP---------SGSWRVQVYSHTETKIQPDGTSKNKRIYKSFTNDDPTTKGKRQ 51

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +    S        S +    ++  ++ +Y  +A    L+  +   + S    ++    D
Sbjct: 52  AEKDASAWAANKELSSKSYNKSIGTMLDDYC-TAKSNVLSPTTINGYRSIKRFMMSSIVD 110

Query: 109 FDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                I    I+  +       +P +       +   F     ++ +       V+ P++
Sbjct: 111 QKADLINNDKIQQWINEISIERSPKTVRNAYGLLVAAFDLYYPEKRI------KVKLPQK 164

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                   +  D++    ++    +   A     +  LR S+ C    + +  N  S+  
Sbjct: 165 IKSNTYTPSDNDIKILMDYFKRDKEMLKAVCLAAFGTLRRSEICALTSEDVTGNTISVNK 224

Query: 227 QKTGTIITVELPDGF------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                 +++    +                   S  F     K 
Sbjct: 225 AMVRVSRGEWTIKTTKTVSSTREIIMPQFVINMLPHTGKLVDVGAPDNISNRFARAIKKL 284

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +     H +R ++A+I          +M   GW +     + Y
Sbjct: 285 KLENIRFHDLRHYAASIMHALNVPDQYIMQRGGWSSDKTLKQVY 328


>gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 409

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 87/280 (31%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E +KS     +   +   + S    +           D  + ++T   I    +
Sbjct: 114 LDILIKE-KKSHVGIDIKEGAIHGYHSTRIHLQEFIQKKYKVSDLAFSQLTENFIHEFGQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+     T ++ + + A R+    +      +  K   +  +   KE + 
Sbjct: 173 YFLGECGFQESTFYNAATHLKTVCRLAYREGLADVPLFDKAKISKGDKKLPKALDKEALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+ + E         R  F F  Y+G    D    G +HL  +       K       
Sbjct: 233 KLKALYFEDLEEEMETARDIFLFACYTGAAYCDLMELGKKHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG++ S   H  R
Sbjct: 291 TSVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYVTYQSYLKALRLRAGISFSFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|257883925|ref|ZP_05663578.1| phage integrase [Enterococcus faecium 1,231,501]
 gi|257819763|gb|EEV46911.1| phage integrase [Enterococcus faecium 1,231,501]
          Length = 381

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 113/380 (29%), Gaps = 48/380 (12%)

Query: 12  TKERTRHGKIIYY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            +  T+ GK   Y       K  G+  ++      T   A   AL+      +     + 
Sbjct: 5   KQYETKKGKFWLYEAYLGINKMTGKPDKVRRRGFKTKKEA-QLALSRLQVDYDKNGIKKA 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T K +   + ++            +   +   I+ K G+    ++T K  +  V S 
Sbjct: 64  NNETFKEVYDLWIETYKTTVREATFMKTEIKFRKWILPKYGNLRMNEVTVKKAQQIVNSW 123

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----------WTK 176
             T        ++ + +F +A+    +  NP  +V  PKR T   +            T 
Sbjct: 124 AETTDQYKVLHSTSKRIFSYAINLGIIETNPLENVLMPKRTTTKHKEKVKVYSKEQLITL 183

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            D    K         +    FL YSG+R S++       +     ++   KT +     
Sbjct: 184 FDYLNSKPETYRNDFDKTLLRFLFYSGVRISEALALNWSDIDFQENTVTINKTLSQSKNG 243

Query: 233 ------------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                                   +     +    +L +        F    K+ +    
Sbjct: 244 YKISDPKTDRSAGVLPLDERTISILKKWQINQRKYMLTLGITDPTMIFCGIYKELITHHA 303

Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
                     KA V     H  R   A++  DAGAT  E+        + Q  + Y   A
Sbjct: 304 IYARLITICEKAMVPFLGVHVTRHTHASMLLDAGATMVEVQTRLRHTKISQTIDCYGHLA 363

Query: 327 DRIRLGIKNSRRISSVVDSD 346
              +   K   ++   ++ D
Sbjct: 364 KETK--EKTVEKLVQHLNID 381


>gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 335

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 86/300 (28%), Gaps = 37/300 (12%)

Query: 74  LISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123
           LI+ + +         +++S  ++ + F  ++  + D             I    + + +
Sbjct: 7   LITAFLREHMPQQRGYSLHSCEAYATCFRLLLTFAADRLKTRPSRLTLEAIDAAMVLAFL 66

Query: 124 ES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTK 176
                 R ++P++    L +++   ++   Q   A+     ++    K      IR  T 
Sbjct: 67  AHIEQDRGNSPATRNLRLAAIKAFMRYVELQRPSALEQVAQIDAIPGKRHDQKLIRHLTT 126

Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
            +++            G + R        +GLR S+     +  +  +            
Sbjct: 127 AEVRTILDAPDTSTRSGIRDRAMLHLCFAAGLRVSELVGLTMNGVTLHPNPSVLVFGKGR 186

Query: 233 I------TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKA----- 280
                    E        LA+         F+N     M    F    +     A     
Sbjct: 187 RERSLPLWKETARDVRAWLAVRGNPPTPELFVNAKGMAMTRAGFEYILEKHGAIAAKKCP 246

Query: 281 ---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNS 336
              G   S H +R   A +   A     ++    G   +   E Y       +L  ++  
Sbjct: 247 TLVGRTLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKLEAVEAV 306


>gi|315925038|ref|ZP_07921255.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621937|gb|EFV01901.1| putative phage integrase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 361

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 96/324 (29%), Gaps = 32/324 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           GR+IR    +  T   A    +          +    K  +    +  +       +++ 
Sbjct: 28  GRQIR-KSFYGKTKKEAEEKYIQFMMAGA---DPTPAKKYSFVDWMDRWLADYKEPNVSD 83

Query: 90  NS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWA 147
            + + ++     ++ +K      +       +    +    + S   +    +  LF+ A
Sbjct: 84  QTYQRTYLPIRRELAKKFPRRQLQSFQPAEWQHYFNAAAFRSGSYLNKRKMFLTGLFQAA 143

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           V  + +  +P   V  P       +     D  +    ++      L    +L  GLR S
Sbjct: 144 VDNDLIDKSPMRGVIVPNGAPAKEKRAYNHDQYEKVLAFARSDPDGLGPFIMLKYGLRRS 203

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIG 251
           +      + +     ++  ++   +                 T+ L D F++ L M P  
Sbjct: 204 ELLGLMWKDIDFTEKTLHIERAVRMDHGIAELGPTKTKRSNRTLPLDDDFIEHLKMVPRS 263

Query: 252 KETFF--INNDKQKMNATQF-SIWFKAKATKA-----GVN-KSAHGVRKFSATISADAGA 302
                    +  +  N   +    F A   +       +   S H +R    +I  +AG 
Sbjct: 264 SIYVMGAFGDGNKPRNPDTWARERFGAYCARLTDALPDIPVLSPHELRHTFGSILYNAGV 323

Query: 303 TAHELMATYGWKTVD-QAETYTKG 325
               +    G   +D    TY   
Sbjct: 324 DIVTISRMMGHSKIDVTVNTYVHS 347


>gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 353

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 104/324 (32%), Gaps = 41/324 (12%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGD-----FDYRKITTK 117
           K   T+  LI E+  +      + ++  ++      +      +GD          ++ K
Sbjct: 28  KPDGTVGALIEEFLTARATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPK 87

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            +R+         +  S  +  ++    F + V +  V  NP  +V RP+      +P  
Sbjct: 88  VMRAAFARFAAPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLR 147

Query: 176 KEDMQQFK----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ED  +                   +        L +GLR S+     V  +       +
Sbjct: 148 GEDTPEELLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERR 207

Query: 226 TQKTGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------NATQFS 270
               G      TV + DG  ++LA     +   F +   +                    
Sbjct: 208 VDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDAPFLVDRQGEALRRGGLQ 267

Query: 271 IWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              ++   ++G+          H +R   AT  A+ GA+A E+M   G  ++  ++TY +
Sbjct: 268 YLVESCYRRSGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIE 327

Query: 325 GADRIRLGIKNSRRISSVVDSDDP 348
                +     + R +  +    P
Sbjct: 328 VTAGQQRAAVAANRTNRALSGLAP 351


>gi|241764726|ref|ZP_04762736.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241365779|gb|EER60442.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 335

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 97/338 (28%), Gaps = 35/338 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +      R G   YYF KG   R  +    +        S L  +  K+   N       
Sbjct: 3   YFRSRTHRSGTTYYYFDKGGKPRKEIALGKDYVMAVRKWSELIAAEEKKAVAN------- 55

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126
             + L  +Y +       A +++    S    +             +I   HI + ++ +
Sbjct: 56  -FRDLADKYEREVVPLK-AKSTQTLQASDIKLLREFFCTPSPAPLDEIKPSHIHALLQWK 113

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           KH   +A +   +   +F   + + +            K      R     D      + 
Sbjct: 114 KHQAPTANRLKRTFSHMFN--MARAWGYTEKANPCAGIKGLPVKKREQYITDEVYRAVWN 171

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R A +    +G R +D+       +++    +   KTG  + + +      LL 
Sbjct: 172 VAAWPLRDAMDLAYLTGQRPADTVGMTDDDIEDGRLKVTQGKTGAKLRIRIEGELAVLLD 231

Query: 247 MTPIGKETFFIN-------NDKQKMNATQFSIWFKAKA-TKAGVN---------KSAHGV 289
                K+   +           + ++       +K      A +N            + +
Sbjct: 232 RIKARKDACKMWSASLVVNQAGESLSQKALGEVYKRARTKAAKLNPKLADQIKTMRFYDL 291

Query: 290 RKFSATISAD-AGATAHELMATYGWKTVDQAET-YTKG 325
           R  +A   ++  G          G  +V   +  Y + 
Sbjct: 292 RAKAADDVSEVRG--EAAAAELLGHDSVTTTQRHYLRK 327


>gi|238821318|ref|YP_002925134.1| hypothetical protein PH10_gp01 [Streptococcus phage PH10]
 gi|238804900|emb|CAY56494.1| hypothetical protein [Streptococcus phage PH10]
          Length = 382

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 96/375 (25%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     GR+  +     +T   A  +AL     +   
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYIRRSFYFRGRKKEITKSGLTTLPQA-RAALAEIEQQIHD 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDKYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKPKFGSVQLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S       AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMAFLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E    +  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMSKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLYRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|167552499|ref|ZP_02346252.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322867|gb|EDZ10706.1| phage integrase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 359

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 100/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA----LTG 53
           M+       LP  +T    ++ +  Y+      + I L        +   + A       
Sbjct: 1   MSQKKYDANLPKNLTYR--KNDRAFYWRNPVTKKEIALGQIARRDAVAQAIEANNYIYQN 58

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            TP             T+   I  Y        LA N+     +    +  K G+     
Sbjct: 59  YTPAALIEKLKGSDTFTVSMWIDRYDVLLKRRDLAANTYKIRGNQLATVREKMGEMILAD 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ +  +  NP      P+ K    
Sbjct: 119 VTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +     +   LA +  L +G R  D        + +    +   KTG 
Sbjct: 179 RLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAFPLSLNLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GV       + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KISGVKFSDNPPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 19/264 (7%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I ++    D    ++T + I        + +     +   +
Sbjct: 38  RAKGTYPAYIYTRRTLAEFIEKEFRTKDVAFGQMTEQFIHDYQSFILDEKGLAIDTCRHY 97

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192
           L  ++ + + A ++ +           P+ K +  +  ++E  ++ +       +     
Sbjct: 98  LAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKTLSRESFEKIRDLVIPEHRASHIL 157

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--- 248
            R  F F  Y+G   +D+      +L  +       K             +KLL      
Sbjct: 158 ARDLFLFACYTGTAYADAVSVTRDNLFTDDNGGLWLKY--RRKKNELRACVKLLPEALAL 215

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAH 305
                          ++        K  A  A +  + + H  R   A++   +AG    
Sbjct: 216 IEKYRDDDRQTLFPMLHYPNMRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIE 275

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y K   + 
Sbjct: 276 TICKMLGHSNLQTTQVYAKVTPKK 299


>gi|282910462|ref|ZP_06318266.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325854|gb|EFB56162.1| integrase [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 406

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K      
Sbjct: 5   KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLNDNTP 64

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 65  TTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 124

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ER 163
             +            +  L+  + +F++  R   +     L                 +R
Sbjct: 125 VFDEMDSKGYVYQVNKDALSMFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 184

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
            K           +D+         G   R      L  EF   +G+R  +      + +
Sbjct: 185 NKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIKNEDI 244

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 245 DFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 304

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G+ K  S+H +R    ++ +  G 
Sbjct: 305 WNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEISSHILRHSHISLLSQQGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 365 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 279

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 77/264 (29%), Gaps = 14/264 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           + ++++       A  +   +            +    +++ + +         ++  +S
Sbjct: 9   LEKFKQFLIDEERAAATIEKYRRDVQAFFTWLPEK--TEVSKEMVLEYKRKLAAQYKSTS 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A   L ++   F +  R++ + +          R+        +       +   +  + 
Sbjct: 67  ANSMLVALNRFFGFCGRRD-LQVRLLKVQRVSFRERSREMSVEEYKRLVRAAREKKDERL 125

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L  + L  +G+R S+     V+ L++    I     G    V LP    K L      K
Sbjct: 126 SLLIQTLCSTGIRVSEHRCITVEALRSGSICI--DGKGKERAVFLPKKLQKQLKYYCKEK 183

Query: 253 ETFFINNDK----QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAH 305
           +            + +N        KA    AG+       H +R   A           
Sbjct: 184 KITTGPVFITKSGKPLNRCNIWAEMKALCKNAGIEPQKVFPHNLRHLFALTYYRLEKDIV 243

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            L    G   ++    YT   +  
Sbjct: 244 RLADILGHANIETTRIYTSTTEEE 267


>gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836]
 gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836]
          Length = 318

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 93/297 (31%), Gaps = 37/297 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR--KHTPSSAIQFLT 138
              + ++  ++      I     D         +T   +R+   +    H  SS ++  +
Sbjct: 17  RKDSPHTTAAYRRDLAGITALLTDDPDSLQVEDLTAPALRAAFGAFADGHAKSSVLRAWS 76

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----- 193
           +      + V    +A NP  +V RPK      +P   ED  +     +     R     
Sbjct: 77  TWNQFLTFCVSDGLLAGNPMGAVARPKTPPLSPKPLRGEDTPERLLQAAADGVRRGRDPW 136

Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFMKLL 245
                L     L +GLR ++        L      ++    G      ++ +     +++
Sbjct: 137 PERDVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMERII 196

Query: 246 AMTPIGKETFFINNDK------------QKMNATQFSIWFKAKATKAGVNKS------AH 287
           A         F                   +         K+    AG++         H
Sbjct: 197 AAYLDSCARRFPRKRFGRSAKLLLDREGSPIGRGGLEYLVKSCYRWAGLHDRVPVGANLH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            +R   AT  A+ GATA E+MA  G  ++  ++ Y +   R +     S R    +D
Sbjct: 257 ALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAATASNRTYRTLD 313


>gi|289208406|ref|YP_003460472.1| integrase family protein [Thioalkalivibrio sp. K90mix]
 gi|288944037|gb|ADC71736.1| integrase family protein [Thioalkalivibrio sp. K90mix]
          Length = 424

 Score = 89.8 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 102/327 (31%), Gaps = 43/327 (13%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
           G  +R+ +  P   T   A   A      +      R   ++ + K  TL+  + EYR  
Sbjct: 53  GRSQRLTIGKPGALTVEKARAEAKRIAGEVASGKDPRAEKHARKVKALTLREAVREYRD- 111

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSM 140
                LA  +R SF+     +          +IT   +          +P+ A      +
Sbjct: 112 --ARHLADTTRDSFDRAMKALSDWMA-RPVTEITRDMVARRHRKLGEDSPAFANLAFRYL 168

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------------ 188
           R +   A           L  + P ++    + W + D ++      E            
Sbjct: 169 RAVLNHASEAHAYPDGRPLLPDNPVKRLSATKAWYRVDRRRTYIERHELRPWMQAVQGLA 228

Query: 189 ------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQK 228
                             G+  R  F  L+ +GLR +++     + +       +I   K
Sbjct: 229 HPPEREPGEGKTKPKLRNGAIARDVFMVLVLTGLRRNEALGLRWEDVSFAGRTLTIPDPK 288

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                T+ L D  ++LL          ++ +D                A  +GV    H 
Sbjct: 289 NYQPHTLPLSDYLVELLKARQQESGGEYVFSDAAGTRFQNLRYAVDRVAEVSGVRAMPHD 348

Query: 289 VRKFSATISADAGATAHELMATYGWKT 315
           +R+  AT++      A+ + A    KT
Sbjct: 349 LRRTFATVAESLDVPAYAVKALLNHKT 375


>gi|323440310|gb|EGA98024.1| phage-related integrase [Staphylococcus aureus O11]
          Length = 401

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 116/401 (28%), Gaps = 69/401 (17%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIR--LPYPHESTFIPAYMSALTGSTPKREY 60
           ++ K + ++ +  Y + +          +R+   L    +     A          K   
Sbjct: 2   WIEKFKNKNNETSYRYYEKYKDPYTDKWKRVSVVLNKNTKQAQKEAMFRLEEKIKEKLHD 61

Query: 61  INSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKH 118
            +S   K  T   L+ E+ +         V +  + ++    I + S  +    KI TK+
Sbjct: 62  KSSNELKTLTFHSLLDEWLEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKY 121

Query: 119 IRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP----- 164
           +++ +      ++ +   + L  M+         + +       ++      +       
Sbjct: 122 MQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEK 181

Query: 165 ---KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL 217
              K           +      +  +   + R+    A E    +G+R  +     V+ +
Sbjct: 182 EEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDV 241

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE 253
                +I    T   I      G                           +L    + + 
Sbjct: 242 DLKNKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQW 301

Query: 254 --------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                     F       M  ++ +    + A    +NK  + H +R    ++ A+   +
Sbjct: 302 EPSYVDRGFIFTTYQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNIS 361

Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              +M   G        + YT   +  ++  +  +++  +V
Sbjct: 362 LKAIMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|227485419|ref|ZP_03915735.1| integrase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236549|gb|EEI86564.1| integrase [Anaerococcus lactolyticus ATCC 51172]
          Length = 412

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 114/379 (30%), Gaps = 47/379 (12%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHE---STFIPAY--MSALTGSTPKREYINSP 64
            + ++GK  Y    G     G+RI+     +     F  A            K       
Sbjct: 10  YKDKNGKFFYQVELGIDNITGKRIQKKGRKDNNGKNFSTAKSCYDYSIYLKRKYVESQGI 69

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                 L+  I +Y    +   +  ++  +      ++ +   +     I  +   +   
Sbjct: 70  FANGIKLEDFIEKYFIGHYKAKVQDSTFRTKIHIIRKVQKYFANAKIEDINVRKCEAFKS 129

Query: 125 SR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  ++ + A      +R +  +AV  E+V  N     +   ++   +  WT ++ Q
Sbjct: 130 DLINNSDYSKTYASMIYGCLRQILDYAVTLEFVHENVSKKTKSIPKEKIYVPFWTLDEFQ 189

Query: 181 QFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQN----------------- 219
           +  S +            +L+    +G+R  +        +                   
Sbjct: 190 KVISTFCLDDLYEHMGFVMLWLYFNTGIRVGEGQALTWNKVNFKDKTLTINSTIDLSSPS 249

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWF 273
                 +T+       + L D  + +L      ++ +      I+   + +         
Sbjct: 250 SYTIKNRTKTDSGNRIISLDDSTINILKRWKSTQKKYGVSKFIISYCDKPIRRNTIHRII 309

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADA-GATAHELMATYGWKTVD-QAETYTKG-ADRI 329
              A  A V +  A G+R    +   +   A    +    G    +   + Y+    +R 
Sbjct: 310 NRHAKLANVKRIQAKGLRHSHVSYLINHFNADILTVSNRLGHSGPEITLKHYSHLWPNRD 369

Query: 330 RLGIKNSRRISSVVDSDDP 348
           R     ++++S ++  D+P
Sbjct: 370 R---SLAKKMSGIIKFDNP 385


>gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395]
 gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27]
 gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395]
 gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395]
 gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27]
          Length = 343

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 87/323 (26%), Gaps = 32/323 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            Y +   G+R+R           AY + +      + ++ S       L  ++  +    
Sbjct: 18  CYPQGREGKRVRKR-FATKGEATAYENFIMREVDDKPWMGSKPDNRR-LSDIVELWYSHY 75

Query: 83  HWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP 130
               +  +  I    +      + I        Y    ++        +       K + 
Sbjct: 76  GRTLVNGDVIIQKFHHMVNAMGNPIAATFSAKTYSDFRSRRMSGELIFVDGRWNRGKPSI 135

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           S+    L   + +F              L   +P R++E    +   +  +         
Sbjct: 136 STMNSELARFKAVFNKLKELGEWNAPNPLDDVKPFRESEREMSFLTTEQIKLLLELVAQH 195

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           E +      +  L +G R +++ +     L     +    KT    TV +     + +  
Sbjct: 196 EIADMLKIVKICLSTGARWNEAAKLRGSQLSEYKITYTNTKTKKNRTVPISRELYEEIYK 255

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
              G+           +              K G+      ++H +R   A+     G  
Sbjct: 256 PTSGRLFEECYTPFCYI-----------LKNKLGITLPSGQASHVLRHTFASHFMMNGGN 304

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y+  A
Sbjct: 305 ILVLRDVLGHADISMTMRYSHFA 327


>gi|190149725|ref|YP_001968250.1| tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263034|ref|ZP_07544656.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914856|gb|ACE61108.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306871660|gb|EFN03382.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 338

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 98/325 (30%), Gaps = 25/325 (7%)

Query: 16  TRHGKIIYYFR--KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R    I++       G RIR             +   L       E +N  +      +
Sbjct: 5   KRKDSAIWWVDVVTPSGSRIRRSSKTAIKKQAQEFHDKLKSQLWDVEILN--KSPDRYFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
             +  + K             S +++      +      + +T++ + +         ++
Sbjct: 63  EALLLFLKDGQGQKR----FDSKQAHAQYFRERFHGRTLKSLTSEELINAIPTFCHRRNK 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  ++ +S+  +F  A +  +V   P +  +    + +    W ++         
Sbjct: 119 PLSPATQNRYRSSLLRIFSLAHKAGWVEKIPFIMRKN---EPKVRVSWLEKSQAAELINS 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
            +    R    F L +G R S+        +                    ++ L +  +
Sbjct: 176 LKLEWMRNVCTFALLTGARMSEILTLTWDKVNFAKNLAIVSNDKAKSGKARSLPLNNKAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
            LL       ++ ++       +A        F+    K G+     H +R   A+    
Sbjct: 236 DLLQQIKTKSKSKYVFVRCSTGHAIGDIDRRDFRQACEKIGMPSFHFHDLRHTWASWHVQ 295

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           AG     L    GW+T++    Y  
Sbjct: 296 AGTPLFTLKEMGGWETLEMVRKYAH 320


>gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 421

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 80/308 (25%), Gaps = 43/308 (13%)

Query: 62  NSPRKKPTTLKWLISEYR---KSAHWGSLAVNS---RISFESYFD-QIIRKSGDFDYRKI 114
               ++  T    +  +    +S   G    NS     +        +    G     +I
Sbjct: 66  KDTDEEGLTFSEFVPRFLALCESPAAGRRGANSEGELANKRGMIRDHLEPYFGQMLLSEI 125

Query: 115 TTKHIRSG----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----NPCL 159
           T +   +             S+  + SS    L  +R + K A R + +        P  
Sbjct: 126 TAREADAYVCAKSTTISKRTSKPLSSSSIANHLGLLRRMLKVACRWDMLTKVPEITIPKK 185

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHL 217
                       R    +    F+   + G +   RL     L  G     + R  V   
Sbjct: 186 GEVDNYLSRRESRRLLAKADPLFRDMIALGLRTGMRLGELQELRVGDINLGAARIRVTRQ 245

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------------TPIGKETFFINND 260
           +    +IK  K     TV++P   + +L                         T      
Sbjct: 246 RTKEGTIKKPKGDKTRTVQVPHDAVTMLRKRVAGLERDELVFSKPAGYQAPHRTEAPAEG 305

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +  +  +     +     A +      H +R   AT +  AG     +    G   +  
Sbjct: 306 GEHWSHKEVFAAVQRATEAAKIGRKVGVHTLRHTFATHAVAAGVPLSVVSRQLGHADIRT 365

Query: 319 AETYTKGA 326
              Y   A
Sbjct: 366 TMRYAHHA 373


>gi|154175228|ref|YP_001408727.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
 gi|112802137|gb|EAT99481.1| site-specific recombinase, phage integrase family protein
           [Campylobacter curvus 525.92]
          Length = 385

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 99/367 (26%), Gaps = 40/367 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKG-HGRR-------------IRLPYPHESTFIPAYMSALTGS 54
           P +      +G +++Y R    G++             I   Y  +  F     +     
Sbjct: 18  PGIFFNNLANGDVVFYMRVTLEGKKANIKIGSKSEGVNITYAYNKKKEFDAKQRNGELPD 77

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-VNSRISFESYFD-QIIRKSGDFDYR 112
           +  ++ +    K       +   +         +   +       ++     K G     
Sbjct: 78  SISKKIVAKNNKNSLKFDEIADAFFSFKLEKEPSNAVNIKEQRRDYEIYHKDKLGGLTTT 137

Query: 113 KITTKHIRSGVESRKH--TPSS--------AIQFLTSMRVLFKWAVRQEYVAI--NPCLS 160
           +IT + I    +      +P +            +  +R +F  A++   +       + 
Sbjct: 138 QITPETINEHHKDISQIISPKTKRKLSQSRINAIMGIVRTIFNHAIKVGLINHISPYKIE 197

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +++P  K E      + ++ + +    E     L  E  L +G R         + L  +
Sbjct: 198 LKKPNNKRERFLELIEIELLRKEVASKEDFALELFVELALCTGARLEGILNIKKKDLSLS 257

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
             S  T       +        + L M          N+              +    K 
Sbjct: 258 TKS-VTISDFKTKSTYTGFLSKRALGMINQIYTALSPNDSLVNKPKATVQNVLQPLLNKL 316

Query: 281 ---GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRI 329
               ++ S        H +R   A+  A  G     +        ++    Y K   D  
Sbjct: 317 FNQNLDISDATNRVVIHTLRHTFASHLAIKGTPILTIKKLMNHSDINHTLRYAKLMPDSG 376

Query: 330 RLGIKNS 336
           R  ++  
Sbjct: 377 REMVETL 383


>gi|71274529|ref|ZP_00650817.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71898068|ref|ZP_00680254.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|170730782|ref|YP_001776215.1| phage-related integrase [Xylella fastidiosa M12]
 gi|71164261|gb|EAO13975.1| Phage integrase [Xylella fastidiosa Dixon]
 gi|71732042|gb|EAO34098.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|167965575|gb|ACA12585.1| phage-related integrase [Xylella fastidiosa M12]
          Length = 410

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 98/346 (28%), Gaps = 41/346 (11%)

Query: 14  ERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGST------PKREYINSP 64
             T  GKI Y  +    G   RI +      T   A   A             R      
Sbjct: 33  RVTPTGKITYIVQGRVNGSSPRISIGPHGVFTVDQARDVAREHLRSMRMGIDLRAVAKKE 92

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             +  TL+ +   Y++      L  +S+   E +             + I  + +     
Sbjct: 93  AAQRVTLRDVADGYKRD---RPLKDSSKAEIERHVTTTFEAWLKKPLKDINREAVTKRFN 149

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------KRKTEG 170
             K          P+ A Q    +R LF +A+R+        +  + P      K     
Sbjct: 150 EIKTKGTTGNGPAPAQANQAFAVLRALFNYAIREYREPDGSPVLTDNPVDVLYKKWAPLK 209

Query: 171 IRP-----------WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218
            R            W+     + +++  +          L+ +GLR  +        +  
Sbjct: 210 PRTSRVPDSKVGAVWSFLTKAREQAYNRDTLASIDLVMLLMLTGLRIGECSELTWDRVNL 269

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAK 276
                 I   K    + + L    ++LL      K + F+ +   K  +        K  
Sbjct: 270 EEGWIHIPDPKNSNPVWLPLSTQAVQLLTTRQRVKGSPFVFSSWGKAGHIKDPRDTMKKV 329

Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAET 321
           +  AG   + H +R+   TI   + G   H++              
Sbjct: 330 SEVAGTKITPHDLRRTYTTIGVASVGIDLHKVELLTNHVPKGVTAR 375


>gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6]
          Length = 391

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/377 (11%), Positives = 100/377 (26%), Gaps = 53/377 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPT 69
           V   +   GK     RK       L          A +     +          R     
Sbjct: 16  VLSYKDADGK-----RKTKWEATGLSVKRNKKKAEALLLERRRNFMVPTAPAEIRLDDDI 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR 126
                + ++ +     S+ + +   ++   ++II             +    ++     +
Sbjct: 71  LFSDFMLKWLE-VTKSSVQITTYACYQGMVERIIAPYFRKRGIKLVDLKATDLQDFYTKQ 129

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +   +S I +  ++    K+AV+ + +  NP   VERPK+       ++ E++    +
Sbjct: 130 LERVKANSVIHYHANIHKALKYAVKIDLIPTNPADKVERPKKNAFKGSYYSAEEIHA-LT 188

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF---------------------- 222
             +EG++  +      + GLR S+        +                           
Sbjct: 189 EVAEGTKLEIPVLLASFYGLRRSEVLGLKWDAIDFEENTLEIKHIVTQASIDGKKVLVQA 248

Query: 223 ------------SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNAT 267
                        +       ++ ++      + L              ++     +   
Sbjct: 249 DRAKTKSSLRTLPLVPPIRDRLLMLKGQQETYRRLCGKSYNRDYLGYLCVDEIGNIIRPN 308

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
             S  F     K G+     H +R   A++    G    ++    G          Y   
Sbjct: 309 YVSEQFPKLLEKNGLRPIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHL 368

Query: 326 ADRIRLGIKNSRRISSV 342
               +L       +  +
Sbjct: 369 DYASKLS-SAQAMLEGL 384


>gi|238801921|ref|YP_002925124.1| integrase [Streptococcus phage 5093]
 gi|238558607|gb|ACR45937.1| integrase [Streptococcus phage 5093]
          Length = 390

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 111/377 (29%), Gaps = 50/377 (13%)

Query: 18  HGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKKPTTLKW 73
           +GK  Y+ R       +  R+     S    A   A      K  + I S      +   
Sbjct: 10  NGKYKYFERYKDTYTEKWKRVSVTLNSGSNRAKKEAQRLLDDKIAQKIESSSTTNVSFHS 69

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSS 132
           + +E+ +      + ++S  S  +   +I            I  + I+S + +   T S 
Sbjct: 70  VFNEWWEFHQ-KQIKLSSIKSLSASVKRISDAIEQGTILSNINVRLIQSLLGNEDWTDSQ 128

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----------QF 182
             +  T +   F +A+ Q+ ++ NP      PK+  +  +    ++            + 
Sbjct: 129 KYRAKTVLNTFFDYAMDQQLISDNPSRKARLPKKTNKLEKKKAAKNKYLEPDEYSRLLKE 188

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-------------------- 222
                   +  LA EF+L +G R  +     V                            
Sbjct: 189 LYRRDITLRYALACEFMLLNGCRIGELAGLTVSDYHKETRSLDIHTSFNRYIPENEGTKT 248

Query: 223 ---SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 T  T   I +      +K+L+ T   K                 S    A   +
Sbjct: 249 VASYRTTYLTNREIEIVDQILELKILSETTNPKWYHSDKIFTTNTGKPIHSTILSASLQR 308

Query: 280 AG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
           A          + S H  R  + +I A+   +   +M   G    +     YT       
Sbjct: 309 ANARLEKPIDKHLSPHIFRHTTISILAENNVSLKTIMDRVGHADSEVTTSIYTHVT--RN 366

Query: 331 LGIKNSRRISSVVDSDD 347
           +  +    + +V+ ++ 
Sbjct: 367 MKDQAVNVLDNVIINNF 383


>gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC
 gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 355

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 263 KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++           A +AGV   S H +R  +AT   D GA   E+    G  ++   + 
Sbjct: 276 RIDQRIARDIVHRAAREAGVPDISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQR 335

Query: 322 YTKGA 326
           YT  +
Sbjct: 336 YTHVS 340



 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSS 132
           Y KS     L+ N+  ++ +       +    G  D  +IT   +RS +  ESR H  SS
Sbjct: 16  YLKSN--RGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHARSS 73

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             +   ++R  F WA      A +P  ++  P   +      T
Sbjct: 74  MARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLT 116


>gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139]
 gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139]
          Length = 348

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/342 (10%), Positives = 91/342 (26%), Gaps = 64/342 (18%)

Query: 62  NSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHI 119
           ++ + +  T     +E+ +           +    +S  + +           KIT  ++
Sbjct: 5   STKQLEKLTFHDACNEWLEHYKTHSGSKPTTIKEKKSNTNTVKNAIDSKVLISKITHTYL 64

Query: 120 RSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK- 176
           ++ +     + S       +  +R +FK+A +   +     L      +K +        
Sbjct: 65  QNIINEWAKSHSIGHVQSLVIVIRSVFKYAFKYYDLHDISVLDKIDIPKKAQTRNELQAK 124

Query: 177 --------------EDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQH 216
                         +            ++ R         EF + +G+R  +       +
Sbjct: 125 RNNYLEDSEVKELLQCFDYLIKHKRHATRKRNYEMVKALVEFQINNGMRIGELLAIKTDN 184

Query: 217 LQNNIF---------------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           +                             T+ + +  T+ L    + LL    +  +  
Sbjct: 185 VDVENKTLEIDGTINWVTDVETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKE 244

Query: 256 FINNDKQ-------------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300
              N K               ++  + +   K     + +NK    H +R    +  A  
Sbjct: 245 NQWNAKFIDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQL 304

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341
           G     +    G        E YT   D+  +      ++  
Sbjct: 305 GINLKAIQDRVGHSDYKTTLEIYTHVTDQ--MAKDMMNKLEE 344


>gi|94272229|ref|ZP_01292090.1| Phage integrase [delta proteobacterium MLMS-1]
 gi|93450194|gb|EAT01495.1| Phage integrase [delta proteobacterium MLMS-1]
          Length = 398

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 107/367 (29%), Gaps = 42/367 (11%)

Query: 15  RTRHGKI--IYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-- 68
             +HG I   YY  +    G+    P    S       +A       R+   +       
Sbjct: 18  TRKHGIIPDRYYVARFQIDGKSYEEPIGWASEKWT-VEAAKEKLAELRKSAKAGGPATSR 76

Query: 69  -------------TTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
                        TT   L++E + +         ++R   E      +   G+     I
Sbjct: 77  EARAKAAAEAATKTTFAQLLAEIWERELRHKKSGKDTRRLLEKDC---LPTWGNLPVETI 133

Query: 115 TTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             + I   ++  +   P    +   ++  LF +A  +  +  +PC  + +   K      
Sbjct: 134 RRREIVLLLDEIEQRAPIVRNRVHGALTRLFNFAAERGIIDDSPCTRIRKLAEKGRKRVL 193

Query: 174 WTKEDMQQFKSFWSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              E    +++   E  QP       +LA   +L +G R  +        +  + ++I  
Sbjct: 194 TDDEIKTLWEALDPEQVQPMDSYRLTKLALRLILLTGQRPGEVAGMTWDEIDGDTWNIPA 253

Query: 227 QKTGT------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
            +          +T    +   +   ++      F   +    M+A   S          
Sbjct: 254 SRMKNGDPNDVPLTGLALETIEQARQLSGDSPFVFRSTHRDGAMSAHALSRAIATHWQAI 313

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336
           G     + H +R+   T  A+ G          G +       Y +   A   RL ++  
Sbjct: 314 GFKERFTPHDLRRTMRTRLAELGVDDVVAERCLGHRLQGVLAVYNRHDYAMEKRLALEKW 373

Query: 337 RRISSVV 343
                 +
Sbjct: 374 ENNLRRI 380


>gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33]
 gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33]
 gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33]
          Length = 308

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKAPH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
 gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A]
 gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus
           reuteri SD2112]
          Length = 410

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 98/397 (24%), Gaps = 75/397 (18%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G   Y +  G  +R  +                  +      ++       TL  +  
Sbjct: 21  KSGGYQYRWESGDRKRHYVYAKTLDQLRKREKQIEKDNVDGIRLVSM----KMTLNDVYD 76

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES----RKHTPS 131
            +        L  N+  +++  ++       G +  R +    IR         R    S
Sbjct: 77  IWEGLK--KGLKSNTFNNYKYMYNHFVRNDLGQYKIRTLKVTDIRRFYNKLVDVRGLKVS 134

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKSFW 186
           S       +  +   AV+ + V  N   +            +   +  T E    F ++ 
Sbjct: 135 SLDTIQLIIHQVLDLAVQDDLVRKNVSDNGLRELKRMRGIDSIPRKSLTIEQQNLFLNYL 194

Query: 187 SEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
               + +  +     +L +GLR  +      + +      IK   T              
Sbjct: 195 QNTDKYKHWYPTFAVMLGTGLRVGELTGLRWEDIDFKNNLIKVNHTLVFYERSKSSKTGF 254

Query: 233 -----------ITVELPDGFMKLLAMTPIG---------------KETFFINNDKQKMNA 266
                       T+ +     + L                     ++  F+N      N 
Sbjct: 255 GINTPKTKAGFRTIPMIKTVREALQKQQTYLQKEQIRSVDNIDGFRDFIFLNRFGHVQNQ 314

Query: 267 TQFSIWFKAKATK---AGVNKSA-------------HGVRKFSATISADAGATAHELMAT 310
              +   K        A ++K+              H +R    T   ++G     +   
Sbjct: 315 GPLNKALKRIIRDCNFAELDKNPSINNDCLLPNFSCHVLRHTFTTRLVESGMNVKVIQNV 374

Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346
            G   +      Y        +  +   ++   +  D
Sbjct: 375 LGHSDIQTTLNIYADVT--RDMKNQQFNQLEDFISKD 409


>gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              ++  +R ++  AV   E   +           +++  +   +E +++  +   E   
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAELEDPS 132

Query: 192 PRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R           +SG+   D      +++++ I     QK+G++I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                    +                         F+   K  A   G  +  +++ +R 
Sbjct: 193 LSACTAKESLYLFPFLSGTRTGEAAYKEYNRILSRFNHDLKLLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4]
 gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12]
 gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12]
 gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482]
 gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4]
 gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12]
          Length = 419

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 92/288 (31%), Gaps = 26/288 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRK--SGDFDYRKIT 115
            +K  TL    +++ +          ++ ++       +   + + ++    D   ++IT
Sbjct: 111 EEKEKTLISYFTQHNEQYAKKVGKTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEIT 170

Query: 116 TKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             HI +     +     + ++A++F+     +  +A +   ++        R        
Sbjct: 171 VTHIENFYLYLRQECEVSNNTAMKFVQRFHTILLFAQK-SGLSFIDPFGNFRFNFDKTDR 229

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              T+E++        +  +    R AF F  Y+GL   D      + ++  +   K   
Sbjct: 230 GYLTQEEIDTIYYKEFKSKRLEHVRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWI- 288

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK 284
                     + F+ LL +       +       +    ++  + + +    A    +NK
Sbjct: 289 -MKDRGKTGVESFIPLLQIPLDILAKYEGKLKDGRLLPVISNQKMNEYLAEIAAICQINK 347

Query: 285 SA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H  R   AT      G     +    G   +   + Y +  DR 
Sbjct: 348 RITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRK 395


>gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R]
          Length = 419

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 92/288 (31%), Gaps = 26/288 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRK--SGDFDYRKIT 115
            +K  TL    +++ +          ++ ++       +   + + ++    D   ++IT
Sbjct: 111 EEKEKTLISYFTQHNEQYAKKVGKTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEIT 170

Query: 116 TKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             HI +     +     + ++A++F+     +  +A +   ++        R        
Sbjct: 171 VTHIENFYLYLRQECEVSNNTAMKFVQRFHTILLFAQK-SGLSFIDPFGNFRFNFDKTDR 229

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              T+E++        +  +    R AF F  Y+GL   D      + ++  +   K   
Sbjct: 230 GYLTQEEIDTIYYKEFKSKRLEHVRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWI- 288

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK 284
                     + F+ LL +       +       +    ++  + + +    A    +NK
Sbjct: 289 -MKDRGKTGVESFIPLLQIPLDILAKYEGKLKDGRLLPVISNQKMNEYLAEIAAICQINK 347

Query: 285 SA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H  R   AT      G     +    G   +   + Y +  DR 
Sbjct: 348 RITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRK 395


>gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200]
          Length = 311

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 34/294 (11%)

Query: 86  SLAVNSRISFESYFDQII------RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQF 136
            L++NS+ S  S    I           D    +I  +    IR+ +   + +  S  + 
Sbjct: 13  RLSINSQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQALQIRAMMTHAQWSARSINRA 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQFKSFWSE 188
           + +++ + K A       ++   +++   +   G            T           + 
Sbjct: 73  MIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAVLDYCKTQKGTF 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA 246
            ++  L F   L +GLR S+     +     N+ ++     K     T+ LP+   + L 
Sbjct: 133 ATRNLLIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNKSRTLFLPEWVEQNLL 192

Query: 247 MTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                ++        +             + T      K    + GV+  S H +R+   
Sbjct: 193 AWLKLRQRQQGYLVCKSTLTGKLKLSEPTSPTALYRLVKETLYELGVDNVSPHDLRRTFI 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   +     + +    G   +     Y K   R    +K +  +   +  D P
Sbjct: 253 TRLLEQNVDINTVRQMAGHADISTTTIYDK---RDHAFMKQAAAMLDYIPPDKP 303


>gi|118470883|ref|YP_888435.1| transposase A [Mycobacterium smegmatis str. MC2 155]
 gi|118172170|gb|ABK73066.1| transposase A [Mycobacterium smegmatis str. MC2 155]
          Length = 346

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/330 (8%), Positives = 75/330 (22%), Gaps = 68/330 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK----- 127
           +  Y K       + N+  ++           G    D++ ++ + I + V   +     
Sbjct: 6   VERYLKYLTDIERSPNTIKAYAHDLKDWFTFLGGRGLDWQSVSLEDIGAFVVWLRLPTAL 65

Query: 128 --------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                            S+  + L+++   +  AVR          + +    +      
Sbjct: 66  RQGGIAVLPSVEHHCGESTVNRKLSALAAFYLHAVRDGIDVGELLTTWQIGGSRGGWKPF 125

Query: 174 WTKEDMQQFKSFW-------------------------SEGSQPRLAFEFLLYSGLRCSD 208
                                                  +  + R     L  +G+R  +
Sbjct: 126 LHHISKHMPSPRRTVSLKAPKKLPRVLTPGEVQTLLDACDRLRDRFLLALLYDAGMRIGE 185

Query: 209 SCRAGVQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTP----- 249
           +       +      +   +                  ++ EL   +   L         
Sbjct: 186 ALGLRHSDIAAAERQVTVCRRDNDNRARAKSLTARIVPVSAELIRLYADYLHAEYGDLDS 245

Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                  +       +         +    +  ++   H +R  +AT     G     + 
Sbjct: 246 DYVFVNLWGRPHGHPLTYGAVYDLVRRLRRRTAIDFDPHWLRHTAATRMLRDGIGLEVVA 305

Query: 309 ATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336
              G   V     TY     +  R  ++ +
Sbjct: 306 KLLGHANVTVTAATYGHLNVEDARKAMEQA 335


>gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +    KAG+    S H +R   AT     G    ++    G   V+  
Sbjct: 97  HHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|323138675|ref|ZP_08073741.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396030|gb|EFX98565.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 408

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 108/382 (28%), Gaps = 48/382 (12%)

Query: 1   MTPSLRLPPF-------VTKERTRHGKIIYYFRKGHGRRIR--------LPYPHESTFIP 45
           + P  R  P+       +      +G   +  R   G R +        +          
Sbjct: 17  LRPKAR--PYETLDGDGLYVTVRPNGSKSFNLRYRFGGRSKNLTIGLAAIGLAEARRLAQ 74

Query: 46  AYMSALTG--------STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
              + +          +        S +    ++  ++  + +         NS    E 
Sbjct: 75  EARAEIARGNDPCSQKAMRVAAAKVSQQPARDSIAEIVDLFLEKHVKPKTRPNSARETER 134

Query: 98  YFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI 155
              + I+ + GD     ++   +R  +E      P  + + L + R L  WAV ++ +  
Sbjct: 135 LLRREIVARWGDRKLSTVSRGDVRRLLEETAERAPVLSNRVLAAFRKLCGWAVERDIIVA 194

Query: 156 NPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
           +PC  ++    +    R  + ++    +++    G      F+ L  +G R S+      
Sbjct: 195 SPCDKLKPVAAENSRDRVLSDDELAAVWRAVDGLGFPFGPMFQLLALTGQRRSEVAGMTW 254

Query: 215 QHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             +             +       V L    +K++A  P                 + FS
Sbjct: 255 AEVDLASALWTIPAARSKNGLEHRVPLSPQAVKIIAALPRFAGGQGFLFSSGDTPPSGFS 314

Query: 271 IWFKAK-------ATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVD-- 317
              +         A  +G +       H +R+ + +  A  G     +       +    
Sbjct: 315 RAKRRLDDALSTMAKASGDDGMPPFALHDLRRTAVSGMARLGVALPIIERVVNHISGSFA 374

Query: 318 -QAETYTKG--ADRIRLGIKNS 336
                Y K    D  R  +   
Sbjct: 375 GVVGVYQKHQFDDEKRAALNAW 396


>gi|303245272|ref|ZP_07331556.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302493121|gb|EFL52983.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 384

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 98/339 (28%), Gaps = 33/339 (9%)

Query: 10  FVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +V   R   GK+ ++       G R           + A    LTG        N     
Sbjct: 31  YVVWYRDSEGKVRWHTVGWHSDGVRPT-------DGVDARARLLTGKADDSVRANHEEAP 83

Query: 68  P--TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124
               T+  +++ Y   A      V+   +   Y   +  K        +T + +      
Sbjct: 84  AACMTVGNMVARYLSWAEGEGKRVDPERA--RYGLHLASKFEAVPIDAVTLQMLWDVKAA 141

Query: 125 -SRKHTPSSAIQFLTSMRVLFKW------AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
             RK    +       +R              +   A+      + P+   +  R  T+ 
Sbjct: 142 LRRKMAAQTVRHCFGLLRRAVNHAIELELWKGENPFAVKRHGPFKLPRADNQATRYLTRR 201

Query: 178 DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
           + +      +  SQ         L +GLR ++      Q L           K G   +V
Sbjct: 202 EARDLLVALARRSQQVHDMALLSLKTGLRATEIFGITGQDLDCAGRIIHIRAKGGEPQSV 261

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---------KSA 286
             P   M++LA        +   ++         S  F     + G+N            
Sbjct: 262 PAPADIMRILAGYRRQPHEYLFQDENGGQIMWGISSTFDRVVRELGLNDGVTDKRRRVRF 321

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           H +R   A+  A +G  T HELM     K ++    Y  
Sbjct: 322 HTLRHTFASWLAQSGQVTLHELMEMMRHKRIEMTLRYAH 360


>gi|225419985|ref|ZP_03762288.1| hypothetical protein CLOSTASPAR_06326 [Clostridium asparagiforme
           DSM 15981]
 gi|225041377|gb|EEG51623.1| hypothetical protein CLOSTASPAR_06326 [Clostridium asparagiforme
           DSM 15981]
          Length = 335

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 113/336 (33%), Gaps = 20/336 (5%)

Query: 9   PFVTKERTR-HGKII--YYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           P      T+  G     +  ++G  G++  + Y             L             
Sbjct: 6   PNGYGTVTKLSGNRRKPWIVKEGKSGKQKPIGYTSTKEEG------LILLAQYNNDPWDI 59

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +    TL+ L + + +      L  ++R S +S +     K    +Y++I +  ++  ++
Sbjct: 60  KTDKITLEELYTLWLE-KRAVKLGDSNRSSLKSAYKH-CSKLAKTNYKQIKSYQMQDCID 117

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S     S+          L ++A+  + +       +            +T +++ +   
Sbjct: 118 SCGKGYSTQGAIKNLWGHLDRFAMELDIIMKCNSNLLTSEPIPETTKEVFTDKEVSRLWE 177

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGF 241
             +      +   F LY+G R S+       ++    ++++     + G    + +    
Sbjct: 178 NQNLPWVDSI--LFFLYTGFRISEMLSLRTANVDLKEWTMRGGVKTEAGKNRLIPVHSKI 235

Query: 242 MKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
             ++       +T +    +  +++ +++   +     K  +  + H  R    +    A
Sbjct: 236 QGIVQKRFEQSKTGYLFEYEGNEVSESKYREIWADLMGKLQMKHTPHECRHTFRSRLDSA 295

Query: 301 GATAHELMATYGWKTVDQAET-YTKG-ADRIRLGIK 334
           GA    +    G K+    E  YT    + +R+ I+
Sbjct: 296 GANKVCIDRLMGHKSKGTGERVYTHKNIEELRMNIE 331


>gi|218688807|ref|YP_002397019.1| putative integrase from prophage [Escherichia coli ED1a]
 gi|218426371|emb|CAR07196.1| putative integrase from prophage [Escherichia coli ED1a]
          Length = 339

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 97/340 (28%), Gaps = 34/340 (10%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
            P       V   R R      Y  K  G    +               +       E  
Sbjct: 3   RPRKNKKDNVLPPRVRS-NGYSYVWKPEGSTRTIGLGRVRKTS------VAKVWQNYELE 55

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            +      T+  L   +  S  +  LA  ++  +  +   ++   G      + T+ +R 
Sbjct: 56  KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115

Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++ R   + + A   L S+  ++ W   + YV  NPC  V    + +   R     D Q
Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFSLKARTVYITDEQ 172

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               +     Q R+A E       R  D      Q + +    I+  KTGT    E    
Sbjct: 173 YAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232

Query: 241 FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKA----GVN--KSAHGVR 290
               + +                   K+ A   + W+      A    GV    + H + 
Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRSAEQKVGVPFGCNFHDI- 291

Query: 291 KFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                     G +       +     G KT +Q   Y + 
Sbjct: 292 -------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|168187083|ref|ZP_02621718.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
 gi|169294986|gb|EDS77119.1| integrase/recombinase [Clostridium botulinum C str. Eklund]
          Length = 329

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 86/286 (30%), Gaps = 37/286 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES---R 126
           L+ E+ +       +  +  ++ S           K+ + ++  IT + +         +
Sbjct: 26  LVEEFLEYCSSIDRSPMTIRNYRSDLRIIINWFKDKAKNKEFFDITKRDVIKFQNWCITQ 85

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKS 184
           + +P+   +  ++M  +  +             +   + P      +R  T    +Q + 
Sbjct: 86  EMSPARIRRLRSAMSSMSNYIENMLDNDYPNFRNIINKIPAPNLSAVREKTVLSDEQVEF 145

Query: 185 FWSE----GSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------ 233
              E    G   +  F  +L  SG+R S+  +  +     +    +       I      
Sbjct: 146 LIDELMKSGEIQKACFIAVLAGSGMRKSEIVQCDMSWYFGHPTIYEGMYVSPEIRTKGRG 205

Query: 234 -----------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             ++      + L +          N   +++  +    W ++ 
Sbjct: 206 KMGKKLNKYTICAVADDYLKQWYAKRQELNIDCEALFVTKRNEQWERIKESTVDSWMQSF 265

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               GV+  AH +R +SAT          ++    G      +E Y
Sbjct: 266 TKILGVDCYAHCLRHYSATWLKKHSVNIDQIRDFMGHNDSSTSEIY 311


>gi|325956038|ref|YP_004286648.1| hypothetical protein LAC30SC_01600 [Lactobacillus acidophilus 30SC]
 gi|325332603|gb|ADZ06511.1| hypothetical protein LAC30SC_01600 [Lactobacillus acidophilus 30SC]
          Length = 350

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/330 (10%), Positives = 92/330 (27%), Gaps = 31/330 (9%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKW 73
            R            HG+R  L    ++            +   ++       +  T  K 
Sbjct: 6   KRGSSYRARVTIYQHGKRDYLTKSFKTEKEAKVW---GTTLELQKAKGQAIAQQNTLFKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPS 131
               + ++     +   +  ++      I     +    K+    ++S ++     H+  
Sbjct: 63  FYYLFVQTVKIHDVRKATFDNYVKAGKVIDNLFPNAKLGKLDDVQMQSILDKYGETHSKK 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSE 188
           +  + L  +R   ++A  + Y+  +    ++   ++          +     +       
Sbjct: 123 TVTELLKKIRTALRYAYAKGYIYNDFASLLKAHGKELPKRNKALSMSDLTKLKHYLLEHT 182

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTII 233
            ++  L     + +GLR  +      + +  +                     +   +  
Sbjct: 183 DNEFNLMVLLEISTGLRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRR 242

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
           +V +P     LL   P     +  +    K +        K    K G+   + HG+R  
Sbjct: 243 SVTIPKNIYDLLKDIPQKDSGYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDT 297

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322
            A+           +    G  ++   E Y
Sbjct: 298 HASFLFSNNIPLSYVSRRLGHDSILTTEKY 327


>gi|325298304|ref|YP_004258221.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317857|gb|ADY35748.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 435

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 94/296 (31%), Gaps = 24/296 (8%)

Query: 73  WLISEYRKSAHWG---SLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGV 123
            L  EY +        + A  S    ++ +  + +         D   +++    I    
Sbjct: 118 ELYREYMEDYAKRIGINRAPGSLKGHKASYKTLQKFVNDCYGLEDIPLKQLDYSFIEKYD 177

Query: 124 E----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                   ++ ++   ++  ++ + + A+ Q  +  NP  S   P++     R  T +++
Sbjct: 178 NFLRTGMGYSVATVEGYIIKLKTMTRTALAQGTIRYNPFASF-IPEKALRRHRHLTMDEL 236

Query: 180 QQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           Q+  +   +     + R  F F  ++G+   D C   + ++  +       K     T  
Sbjct: 237 QKLMNTPIQDKFLCRMRDLFIFSTFTGISYIDMCNLSMGNVSKDTKGNLWLKFKRQKTKS 296

Query: 237 LPDGFMKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
                +  +    + K       +        +  +      A   G+ +    H  R  
Sbjct: 297 ECVIRLLDIPRRIMEKYEGERIGNKLFNMPCRSALTNNMPKLAKLCGIERRLTYHMARHN 356

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             T+     G     +    G K +   + Y +   +     ++ ++++  + S  
Sbjct: 357 FGTLITLSQGVPLETVCQMMGHKNMSTTQIYARLTHQK--VDEDIKKLTKRIGSKF 410


>gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 78/264 (29%), Gaps = 19/264 (7%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I ++    D    ++T + I        + +     +   +
Sbjct: 129 RAKGTYPAYIYTRRTLAEFIEKEFRTKDVAFGQMTEQFIHDYQSFILDEKGLAIDTCRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192
           L  ++ + + A ++ +           P+ K +  +  ++E +++ +       +     
Sbjct: 189 LAIVKKVCRKAYKEGHADRCFFAHFSLPQPKEKTPKALSRESVEKIRDLVIPEHRASHIL 248

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--- 248
            R  F F  Y+G   +D+      +L  +       K             +KLL      
Sbjct: 249 ARDLFLFACYTGTAYADAVSVTRDNLFTDENGGLWLKY--RRKKNELRACVKLLPEALAL 306

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAH 305
                          ++        K  A  A +  + + H  R   A++   +AG    
Sbjct: 307 IEKYRDDDRQTLFPMLHYPNMRRLMKCLAILADIKEDLTYHAGRHSFASLITLEAGVPIE 366

Query: 306 ELMATYGWKTVDQAETYTKGADRI 329
            +    G   +   + Y K   + 
Sbjct: 367 TICKMLGHSNLQTTQVYAKVTPKK 390


>gi|237721768|ref|ZP_04552249.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229448637|gb|EEO54428.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 386

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 86/289 (29%), Gaps = 25/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWG---SLAVNS----RISFESYFDQIIRK--SGDFDYRKIT 115
           ++   TL  L  E  +S         A ++       ++S    +  K    D    ++ 
Sbjct: 79  KEDSHTLMELFREQLESYKEKVGKEKAKSTYLGLVADYKSALLFLKDKKNVEDIALDELD 138

Query: 116 TKHIRSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              I         T  SA       + +M+ L   A  +  + ++P              
Sbjct: 139 KDFIEDYYNWMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGFGCKPGYK-RR 197

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN------NIF 222
              ++E++Q+         +    R    F+ ++GL  +D      +++         + 
Sbjct: 198 SFLSEEELQRLIHVELRYKRQQAMRDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTWLM 257

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-- 280
             + +     +   LP     +       K+    +      +       FK    K   
Sbjct: 258 GNRIKTGVAYVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVGDYETMKSSFKVLGKKCDC 317

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            VN + H  R   A ++   G     L    G K++   + Y +  +  
Sbjct: 318 NVNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK 366


>gi|327394792|dbj|BAK12214.1| hypothetical protein PAJ_2134 [Pantoea ananatis AJ13355]
          Length = 402

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 28/348 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 54  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 111

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
            +A ++R    S +++ +  K G+    +IT + +R+  ++      P++A+     +  
Sbjct: 112 -MAESTRDMRRSVYERELKPKFGNHKLAEITHEDLRALTDAIVERGAPATAVHTREIVLQ 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +++WA+ +     NP   V          R           M Q+          R A +
Sbjct: 171 VYRWAIERGQKVENPADLVRPTTIAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAK 230

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     + L +         
Sbjct: 231 LLLLTMVRKSELTNATWSEINFTEALWTIPKERMKRRNSHLVFLSKQALDIFIALKTFAG 290

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G+       H +R+ ++T+  +AG 
Sbjct: 291 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGLSLGKFGPHDLRRTASTLLHEAGY 350

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
               +      +       Y K    D+ R  +++   +        P
Sbjct: 351 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWADMIDEWTIRKP 398


>gi|323137433|ref|ZP_08072511.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322397420|gb|EFX99943.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 353

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 89/336 (26%), Gaps = 29/336 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + + G      R+  G+ +   +          +                R+   T   L
Sbjct: 6   KLKSGSWRVQVRRK-GKYVNESFLRRRDAEEWALDIERRIDRGESPTKRVRRDAKTFGDL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
           +  +R         +    S  +    + R+ G      +  + +      R      P 
Sbjct: 65  VRLHRDDLRDVGRQIG--RSKSASLVFLERRLGTCKLGGLDRERLIQFGRDRAKEGAGPV 122

Query: 132 SAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +    L  ++ +            ++    +A      +    + TE  R  T++++ + 
Sbjct: 123 TLGIDLGYIKTILSHAAAVHGVQVSMEPIDLARIALGRLGLVGKGTERDRRPTQDEIDRI 182

Query: 183 KSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            + +    +  +       F + + +R  +  R   +        +  +           
Sbjct: 183 IASFDNNPRQHIPVGRIVRFAIATAMRQDEISRIRWEDFDPAEKMLLIRDRKDPRKKSGN 242

Query: 239 DGFMKLLAMTPIGKETFFINND---------KQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           +  + LL +                          N       F+ +  +  + +   H 
Sbjct: 243 NQRIPLLTIRDYDPCAIIEEQRSISRTSEGRIFPYNGKSVGTAFRRQCRELKIEDLHFHD 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R    +   +AG +  ++    G K       YT 
Sbjct: 303 LRHEGTSRLFEAGFSIEQVALVTGHKDWKMLRRYTH 338


>gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 375

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 99/313 (31%), Gaps = 12/313 (3%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             +R  + Y           S    +     +    +    T + +  E+  S  +  ++
Sbjct: 63  KQKRKIIGYYETQEMAE--FSLWNYNKNPVLFEEIQKLGTITFETIYQEW-SSMKFRCIS 119

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            N+   +++ + +           ++ T H +  ++  + + +S ++  + M ++ ++AV
Sbjct: 120 QNAINGYKAAYAK-CEPIWHCKLSELKTIHFQRIMDESELSVASDLKLKSLMVLVCEYAV 178

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           + + +  N    V   K++          + +    F  +          ++Y+G R S+
Sbjct: 179 QNDIINKNYAKYVTINKKERPPEIHKPFSEKEIEVLFAHDNIPFVDTILIMIYTGFRVSE 238

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
             +   + +     +I+           +     ++                       +
Sbjct: 239 LFQIKTKDVDLQNLTIRGGNKTEAGKNRVVPIHERIQDYVLNYYNMGNEYLICDLETGAK 298

Query: 269 FSI------WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321
            +       +F        +N   H  R   AT  ++ GA A  +    G  +    E  
Sbjct: 299 INYHAYRNNYFDKIMNMLDMNHLPHDCRHTFATRLSNFGANATSIKRLIGHTSYATTEKI 358

Query: 322 YTKG-ADRIRLGI 333
           YT     ++R  I
Sbjct: 359 YTHKDIGQLRRAI 371


>gi|251781708|ref|YP_002996010.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390337|dbj|BAH80796.1| site-specific recombinase, phage integrase family [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 384

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 105/360 (29%), Gaps = 47/360 (13%)

Query: 14  ERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++ ++G +     Y  R                    Y + L             +    
Sbjct: 9   KKAKNGYLYLVKVYMTRDAQRADHIKRGFRTRKEAKDYEARLIYLKASGRLEEFIKPTHK 68

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   +  ++ ++     +   +       F   I+   GD    KI+    ++ +  +  
Sbjct: 69  TYNEIFEKWYQAYQDT-VEPTTASRTLDIFRLHILPVMGDLPISKISPLDCQNFITEKAK 127

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFK--SF 185
              +  Q  +  R +F +A++ + +  NP   +  PKRK   I   WT +++Q+F     
Sbjct: 128 VFKNIKQIKSYTRKVFDFAIKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVL 187

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----------------FSIKTQKT 229
             E  +    F  L YSGLR  +        +                        T+  
Sbjct: 188 QEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQSETLSVNKSLGRLDGQAIEKSTKND 247

Query: 230 GTIITVELPDGFMKLLAMT--------------------PIGKETFFINNDKQKMNATQF 269
            ++  ++L    + +L                                    + ++A   
Sbjct: 248 FSVRKIKLDSETISILQEWKSINQKEKAQLAVAPLSIKQDFIFTYCTRTGSIEPLHADYI 307

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           +        K  + K S HG R   AT+  + G          G  +     +TY+   +
Sbjct: 308 NNVLSRIIRKHSLRKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSHSTN 367


>gi|255691027|ref|ZP_05414702.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262408519|ref|ZP_06085065.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373336|ref|ZP_06619694.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|294646521|ref|ZP_06724158.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294807550|ref|ZP_06766347.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|260623366|gb|EEX46237.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|262353384|gb|EEZ02478.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631732|gb|EFF50352.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CMC 3f]
 gi|292638140|gb|EFF56521.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294445251|gb|EFG13921.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 86/289 (29%), Gaps = 25/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWG---SLAVNS----RISFESYFDQIIRK--SGDFDYRKIT 115
           ++   TL  L  E  +S         A ++       ++S    +  K    D    ++ 
Sbjct: 102 KEDSHTLMELFREQLESYKEKVGKEKAKSTYLGLVADYKSALLFLKDKKNVEDIALDELD 161

Query: 116 TKHIRSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
              I         T  SA       + +M+ L   A  +  + ++P              
Sbjct: 162 KDFIEDYYNWMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGFGCKPGYK-RR 220

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN------NIF 222
              ++E++Q+         +    R    F+ ++GL  +D      +++         + 
Sbjct: 221 SFLSEEELQRLIHVELRYKRQQAMRDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTWLM 280

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-- 280
             + +     +   LP     +       K+    +      +       FK    K   
Sbjct: 281 GNRIKTGVAYVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVGDYETMKSSFKVLGKKCDC 340

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            VN + H  R   A ++   G     L    G K++   + Y +  +  
Sbjct: 341 NVNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK 389


>gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium]
 gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium]
 gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGHDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2]
          Length = 297

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +        +       +  +    F   F      AGV    + H +R   AT 
Sbjct: 190 WAWFWVFPQGRHSADPRSGVVRRHHLVPGSFQRAFARALQAAGVAKPATPHTLRHSFATH 249

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              +G+    +    G   V     YT   
Sbjct: 250 LLQSGSDIRTVQELLGHADVATTMIYTHVL 279


>gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3]
 gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3]
          Length = 409

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 83/273 (30%), Gaps = 21/273 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGV----ESRKHTPSSAIQ 135
             A  +  S+      +           D  + ++T + I        E + +   +   
Sbjct: 128 DRAKGTYPSYHYMRLTLGEFIETKYKVKDLAFGQLTEQFIHDYQAFVTEEKGYAIDTVRH 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---- 191
            L  ++ + + A ++ Y           P++     R  ++E  ++ +       +    
Sbjct: 188 HLAILKKICRIAYKKGYSEKCHFQHFALPRQSERTPRALSRESFERIRDVEIPSYRKTHI 247

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             R  F F  Y+G+  +D      ++L  +       K             +   A+  +
Sbjct: 248 LARDLFLFACYTGVSYADVVSITDENLYTDDNGSLWLKYRRKKNEHRASVKLLPEALALL 307

Query: 251 GKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADAGATAHE 306
            +           + +        KA A  AG+  +   H  R   A++   +AG     
Sbjct: 308 ERYKDETRETLFPIIHHPNMKRHMKALAALAGIKDNLCYHQARHSFASLITLEAGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           +    G   +   + Y + + +     ++  + 
Sbjct: 368 ISRMLGHSDISSTQVYARVSPKK--LFEDMDKF 398


>gi|291278706|ref|YP_003495541.1| phage integrase [Deferribacter desulfuricans SSM1]
 gi|290753408|dbj|BAI79785.1| phage integrase [Deferribacter desulfuricans SSM1]
          Length = 409

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 112/363 (30%), Gaps = 27/363 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +  E    G   + FR            L      +   A   A      + +      +
Sbjct: 27  LFLEVRPTGNKFWRFRYRDQNGKDTYKSLGEYPYVSLSKARQEA-EKLNERLKRGLPLEE 85

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125
           +  T   L +E+ +     S   ++  +  S +++ I    G+ D + IT+K I   ++ 
Sbjct: 86  EKRTFDDLFNEWVELNR-DSYDPSTLETKLSIYNRDIKPYLGNMDIKDITSKRIIDCLKK 144

Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQ 181
                +  +  +  T +  +++ A+ ++ V  +    ++   PK K +     T+    +
Sbjct: 145 IADRDTLVTMKKAKTIIHYVYELAISEDIVTSDLTTTINSSLPKYKEKNYPAITEPAKLK 204

Query: 182 FKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                 +  +      LA +FL+ + +R           +               I  + 
Sbjct: 205 KLIVDIDNYRGHYITKLALKFLMITFVRPGMVRSLEWCDIDFENKLWFVPADKMKIKRDH 264

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----KAKATKAGVNKS---AHGV 289
                          +    +++    +   F              + G  K    +H  
Sbjct: 265 IVPLSDQAVSILKKAQKITGDSNYVFSSPIDFDKMLSNNTLNQALRRIGYTKKEHVSHSF 324

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET-YTKGAD---RIRLGIKNSRRISSVVDS 345
           R+ ++T+  + G   + +      +  ++    Y K      R  +    +  +  + ++
Sbjct: 325 RQTASTLLNEMGWPPYVIEKQLAHEDKNKVRRAYNKAEYLEIRKEMMQFWANYLDELKNA 384

Query: 346 DDP 348
           + P
Sbjct: 385 EKP 387


>gi|262184793|ref|ZP_06044214.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 414

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/377 (10%), Positives = 104/377 (27%), Gaps = 66/377 (17%)

Query: 14  ERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            +T+ G+       G  G+  ++     +      +         +        +  T++
Sbjct: 5   YQTKDGRYRAAITVGYDGKGRQVRRTVSAKTQAECVR-RRNELFIKLKKGRSTPEEITVE 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
             ++ + ++    + + N+  + +SY    II   G++    +    +R   ++ +    
Sbjct: 64  THVTRWLETTAAETFSPNNLRNHKSYATKYIIPTLGEYKLSDVGADEVRELDKAVRDAHV 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-S 187
           +  +     +S+ V  + AV++  +  NPC  V RP+  ++     T ++ +        
Sbjct: 124 SSRTVQMVRSSLSVCMEDAVKRGLIERNPCSQVPRPRAVSKKRTSLTADEARHLIVHSAQ 183

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGT 231
            G      +   L+ G R  +        +  +                    +  +   
Sbjct: 184 VGDPFATLWAAFLFLGPRKGELLGLQRNKVNFSPAGCTAELDRALVEVSWAHGEGCRCID 243

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS--------------------- 270
            +           L      +  +          ++                        
Sbjct: 244 GVRPSKCPTRGLALPPGYDFEPLWGNLILAPPKTSSSVRLVHVPAPLDAMLWQYVQAAPP 303

Query: 271 ---------------------IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
                                  +K+    AG+     H  R  +A++ A+ G     + 
Sbjct: 304 NKWGLMWVSERGLPLRPKVALARWKSALKAAGLPVVDLHTARHTAASLLAECGVPPQVIG 363

Query: 309 ATYGWKTVDQAETYTKG 325
              G  TVD    Y   
Sbjct: 364 VILGQSTVDTTLGYVHV 380


>gi|257081591|ref|ZP_05575952.1| phage integrase [Enterococcus faecalis E1Sol]
 gi|256989621|gb|EEU76923.1| phage integrase [Enterococcus faecalis E1Sol]
          Length = 393

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 110/388 (28%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTP-KREYINSPRKKP 68
           T+ GK  +            G++I +   + +T   A +             + +     
Sbjct: 8   TKKGKKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTHL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKIEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDLKKQVVNIN 246

Query: 219 ------------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINN 259
                             N+I  I        I  +      + L      K    F   
Sbjct: 247 KTTAISTNGLTINDPKTSNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|288573121|ref|ZP_06391478.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568862|gb|EFC90419.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 319

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 81/293 (27%), Gaps = 17/293 (5%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              +  +         A  +   +        R   +      T +       S+   P+
Sbjct: 17  AQALDTFLTFKKATGAAPRTMTDYRKTVGAFFRDYEEAWNGPHTMRPSLVSWLSQDIAPA 76

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    L  +R  ++WAV +E    +P         +   +         K  +       
Sbjct: 77  TYNLRLVYLRAFWRWAVEEELQPDSPDPFRGLKRRKDRGKFRVVSLEDVKALLGGIPRGS 136

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------- 238
             G + R A  F L   +R  +        L  +  ++                      
Sbjct: 137 YAGERDRCAVVFTLDVAIRPGEMLHLLPGDLDLSGLTVTIPAHVAKTREARTLPLSPGTV 196

Query: 239 ---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295
                F++    +       F +   + M+ T +    K  A +A V+ + + +R  + T
Sbjct: 197 DVLRAFLRYRPSSWPPTVPVFASETGRPMDTTHWGHRIKNHARRADVDLTPYDLRHAACT 256

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347
           +   AG     L    G         YT    D +R   + S  I  ++    
Sbjct: 257 LHLRAGMNTLVLQKLMGHTGPQMTMRYTHLDIDDLRDQQRASSPIEDLIPPTR 309


>gi|16800833|ref|NP_471101.1| hypothetical protein lin1765 [Listeria innocua Clip11262]
 gi|16414252|emb|CAC96996.1| lin1765 [Listeria innocua Clip11262]
          Length = 391

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 110/380 (28%), Gaps = 48/380 (12%)

Query: 10  FVTKERTRHGKII-YYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
            + +  T+ GK      R         I             Y + +      ++      
Sbjct: 13  GIYEYMTKKGKRYGIRVRYKQGNDYPEINKSGFETIAAAKVYKNNIENLKANKKEYVF-T 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +  TL    + Y +     + + ++  + +  Y + +    G++    I+       + 
Sbjct: 72  NEKLTLNTWFASYMEMFKKKNKSKDTIANKYSIYNNHLEIPFGNYYLTDISLDIYEDFLR 131

Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKE 177
            +    +  +S       M+ +   AVR E +  N     E  + +   +       T E
Sbjct: 132 EKIKNGYANNSVKAMHKLMKSILNAAVRYEKLEKNRLQFAEIEQLEENEVIELKVLETDE 191

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
                 +  +  ++      +L   G+R  +     +++L  +    +            
Sbjct: 192 FNVFISACRAFFTKYDFTMIYLAVWGMRRGEVMGVKLKNLTFDDAKQQVRITLDSTRTLR 251

Query: 226 ------TQKTGTIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKM 264
                 T+       + +     +LL  +                     F      +  
Sbjct: 252 TPEGKGTKTPAGRRILLIDGEGYRLLKYSVEKAVSIAKDHGSVLHQDDFIFRNPTSNRPW 311

Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             T+ +   +    +  +    H +R    T +  AGA +++L    G K     + Y+ 
Sbjct: 312 AVTRMNDLLRKLEKEYDIKVYPHLLRHNFNTQALLAGANSNDLRKFIGHKNSSMTDHYSH 371

Query: 325 GAD--RIRLGIKNSRRISSV 342
             D  R +L      R+S +
Sbjct: 372 ATDEGREKLMNTMKDRLSGI 391


>gi|297158542|gb|ADI08254.1| putative integrase [Streptomyces bingchenggensis BCW-1]
          Length = 416

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 112/376 (29%), Gaps = 62/376 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  K+   HG++    R       R         +   +  +  +  +++       +  
Sbjct: 17  YFGKDGKWHGRVTVGVRDDGRPDRRHVERRTKAEVTKAVREMERARDEKKLRKPG--QNW 74

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           TL+  +  + ++     ++ N+   +E      ++   G     ++  +H+       + 
Sbjct: 75  TLQSWLEHWVENIAKPYVSENTYDGYEVDVRVHLVPGLGAHKLDRLEPEHLERFYRKMQE 134

Query: 129 TPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
           + S   +A     ++RV    AVR+ +V  N     + P+ + E I P+T E++Q     
Sbjct: 135 SGSSAGTAHHVHRTIRVALGEAVRRGHVPTNVAEIAKAPRLEEEDIEPYTIEEVQSLLVE 194

Query: 184 ------------------------------------SFWSEGSQPRLAFEFLLYSGLRCS 207
                                                     ++ R  +      G  C 
Sbjct: 195 AAKLRNSTRWVVALALGLRQGEALGLHWEDVDLGAGYVRIRKNRLRPKYAHGCGDGEPCG 254

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKE 253
                  +  Q       T+      TV LPD  +KLL                  +GK 
Sbjct: 255 RKAGYCPRRAQIRREHKSTKSRAGRRTVGLPDPLIKLLRQHQEEQERERAEAGADWVGKG 314

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312
             F +     ++       +K     AGV +   H  R  +AT+    G     + A  G
Sbjct: 315 YVFASPIGGPLSPNTDYHVWKRLLRDAGVRDGRLHDARHTAATVLLLLGVPDVVVDAIMG 374

Query: 313 WKT---VDQAETYTKG 325
           W+          Y   
Sbjct: 375 WEPGGAARMRARYMHV 390


>gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum
           K10]
          Length = 307

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 72/263 (27%), Gaps = 12/263 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           +   I  + +  H  ++A N+   +     Q + +    D+  +   H+        + P
Sbjct: 38  IDSAIQGFCQYLHTKNMASNTIHVYSYALRQFLCRYRQVDFSNL---HLYKVFLLEHYKP 94

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    + ++    ++   +        +              +        +       
Sbjct: 95  QTVNLRIRALNSYLEFTRAKSQKLSMVKIQQRNYLENVISEADYEYLKNCLLRDEKYL-- 152

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247
                  F+  +G R S+  +   + ++N    + ++                 L     
Sbjct: 153 -YYFIIRFMAATGARVSEVIQFQAEDIRNGYKDLYSKGNKVRRIYIPKALHQDALRWLEA 211

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304
           + I     F+N   +++         K  A   G+N      H  R   A    +     
Sbjct: 212 SKIQSGDIFLNRFGKRITPAGIRGQLKVLALNYGINPDVVYPHSFRHRFAKSFIEKCGDI 271

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             L    G + ++    Y + + 
Sbjct: 272 SLLSDLLGHRNIETTRIYLRRSS 294


>gi|237726755|ref|ZP_04557236.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435281|gb|EEO45358.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 443

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 22/302 (7%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRK 105
             +  +   +       +   T+  L +E+ +        + +V S   + + +  +   
Sbjct: 90  KEVVSAEEVKNAYQGLAEAQDTIMKLFTEHNEEYALRVGVNRSVTSYYHYTNTYRHLATF 149

Query: 106 SGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
             D         +++    I       +      P + +  +  ++ +   AV +  +  
Sbjct: 150 LKDKYRLSDMPVKQMDENFIEDFDMYMRTVKRFMPKTILGHVNRLKSVMMLAVFRGIIPF 209

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRA 212
           +P      P++        T+E++ +F +   +       R  F F  ++G+   D    
Sbjct: 210 SPFKGYR-PQKPEFKQMYLTEEELGKFANMTYDTPNRNFTRDMFLFSCWTGICYCDMRAL 268

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFS 270
             ++L           T    T       +    LA+    K           +     +
Sbjct: 269 TEKNLVKAEDGSLWIHTERQKTGTPECIRLMEIPLAILEKYKGMDTGGRLLPMLTKESMN 328

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
           I  K  A   G+    S H  R    +I     G     +    G K +   + Y K   
Sbjct: 329 IHLKKMAVMCGINRPISFHQARHTFGSIICLSQGIPIETVSKIMGHKHIKTTQRYAKVTQ 388

Query: 328 RI 329
             
Sbjct: 389 DK 390


>gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
 gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +M+A      F   AT AG+      H +R   AT   + GA    +    G  ++   
Sbjct: 138 NRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDLLEGGADLRSVQELLGHASLSTT 197

Query: 320 ETYTKGA-DRIRLGIKNSR 337
           + YT    DR++  +  + 
Sbjct: 198 QIYTHLTPDRLKRAVAQAH 216


>gi|89893554|ref|YP_517041.1| hypothetical protein DSY0808 [Desulfitobacterium hafniense Y51]
 gi|89333002|dbj|BAE82597.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 308

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 58/302 (19%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVR 149
           I+ + G+     +   H+    +  +             +  S   +   +  + + A++
Sbjct: 6   ILPQLGNLKLSDLRPGHLMKFYKYLEQDGIRQDGKPGKLSDRSIRYYHAVLSSMLEDAMK 65

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSD 208
            + +  NP   VE PK + +    + +    +          + R+     LY+GLR  +
Sbjct: 66  WQLITSNPAARVEAPKVRRKQTTSYDETQSAELLQALYSEPIKYRVLTTLALYTGLRRGE 125

Query: 209 SCRAGVQHLQNNIFS-----------------IKTQKTGTIITVELPDGFMKLLAMT--- 248
                 + +                        KT+  G+   + +P   + LL      
Sbjct: 126 LLGLEWKVIDMENAQIAVVKQSQYTPETGVVDRKTKTEGSQRLISIPTSIVTLLKEYKAA 185

Query: 249 -----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----------VNKSA 286
                          +  F   + + M+    S WF    T+              +   
Sbjct: 186 QNEERLKVGSLWQPSDKLFTTWNGKPMHPDTVSSWFNDFLTRYNEKTIQQGKASLPHIRF 245

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345
           H +R  SA++    G     + +  G  ++   A+ Y           + ++++  +++ 
Sbjct: 246 HDLRHTSASLLIAQGVPLKNVSSRLGHSSIAITADIYASALQSA--DKEAAQKLEDILNI 303

Query: 346 DD 347
            +
Sbjct: 304 KN 305


>gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 376

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 13/160 (8%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTP 249
           + R+  E L  +G+R S++C   V  + +    ++ +  G     V       + L    
Sbjct: 214 RDRVLLELLYGTGVRVSEACGIDVADIDHGRRVVRVRGKGGRERVVPYGSPAQRALDEWL 273

Query: 250 IGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
                  +    +          ++N T       A A   G+ +   H +R  +AT   
Sbjct: 274 RRGRPVLVVPGSRDALLLGVRGGRLNPTTARQIVGAYAQATGLPRIGPHALRHSAATHLL 333

Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
           + GA    +    G  ++   + YT    DR+R   + + 
Sbjct: 334 EGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAYRQAH 373


>gi|309803940|ref|ZP_07698024.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
 gi|308164035|gb|EFO66298.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners LactinV 11V1-d]
          Length = 373

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 107/358 (29%), Gaps = 38/358 (10%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSP--R 65
             V K  T+ G I Y F+   G  I         +   +Y  A       +        +
Sbjct: 6   KRVEKYETKKG-IRYRFKTYVGTDINGKKIWATRSGFTSYTEAKYELDKLKLEGVDSFVK 64

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           +K   +  L +++  +    ++ V++   ++E Y   I  K G+    KIT   ++    
Sbjct: 65  QKQIKVNDLFTQWFDTYQ-TTVKVSTAHKTYEMYKIHIKPKYGNAYVDKITPASLQRFSN 123

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------ 178
           +           L  +       +   Y+ +NP   +  PK+ T   R  +         
Sbjct: 124 ALSKKLVKYRTALGILERTLNLGISLGYLKVNPFSKILIPKKTTRKRRDTSINFLSREEL 183

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------- 223
               K   S      L F  L  +GLR  ++       +  N                  
Sbjct: 184 DTFLKKAESINHLYYLFFLLLASTGLRKGEALALHWSDIDFNTNQISVTKTLAYGLDNKY 243

Query: 224 --IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAK 276
                +   ++ TV L     + L      ++                 +          
Sbjct: 244 IVQTPKSPKSLRTVPLSTHLKEELLKYKDNQKIDTEIIFHTIDGNYLRLSKPTRWLDTIY 303

Query: 277 ATKAGVNK-SAHGVRKFSATISADAG--ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                + + + HG R   A++  ++       ++ A  G +TV+     YT   ++ +
Sbjct: 304 KQLPDLKRITTHGFRHTFASLLIESNPYIKPSDVQAILGHETVEMTLNIYTHVTNQSK 361


>gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 164

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + R   E +  +GLR S+     ++HL  +        K      + +    +  +    
Sbjct: 17  RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 76

Query: 250 IGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
             +  F  + +        ++++A      F     K G+  +   H +R   AT   ++
Sbjct: 77  DLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLES 136

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
                 +    G   +   + YT 
Sbjct: 137 SGDLRGVQELLGHANLSTTQIYTH 160


>gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7]
 gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 411

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYR--KITTKHIRSGVESRKHTPS- 131
            ++      +  +   +++   ++ R      G  D    ++T + IR+     K     
Sbjct: 121 METLTGIDYSPVTINRYKNVVKKLQRLIPSYYGKEDITFHELTPEFIRAFDIYLKTEGGL 180

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              + ++++   +     A+ +E++  NP    +  ++        T +++Q        
Sbjct: 181 CRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDELQAVMKKKFT 239

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240
             +    R  F F  ++GL  SD      ++L  +       + G +             
Sbjct: 240 IPRLELVRDIFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISN 299

Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
                  + +L                  M   + + + K  A   G+ K  + H  R  
Sbjct: 300 IPLLPVPLAILEKYREHPICVKKGCCLPVMCNQKMNSYLKEIADFCGIKKNLTTHVARHT 359

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RIS 340
             T           ++    G  +    + Y +  +  ++  + N + R+ 
Sbjct: 360 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLE 410


>gi|50057029|emb|CAF32668.1| hypothetical protein [Oenoccocus phage fOgPSU1]
          Length = 348

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/327 (10%), Positives = 86/327 (26%), Gaps = 20/327 (6%)

Query: 21  IIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
             Y  +      +R+     H  T    +              +        L      +
Sbjct: 11  KTYRVQIITPDHKRVGKSGFHTKTAAKTW--LTENQLKIVTGQSEVNSSHQLLSDYFKHW 68

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136
            ++    ++   +   +      I R          T +  +  +      H   +  + 
Sbjct: 69  YETYK-TNVTDITLHQYAVTEIIIRRYLPRARLNNFTREQFQKFLNDYGQDHARETVAKR 127

Query: 137 LTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
            T +    K A   + +  +            K        +      +  S+    +  
Sbjct: 128 KTHISACLKDAYEDKIINEDITQRLTLTGRAGKSSELKFLEYGDFKSLEQYSYDHLNNDS 187

Query: 193 RLAFEFLLYSGLRCSDSCRAGV---QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +LA    +++G+R  +     +     + + I   K+      I V       +++ +  
Sbjct: 188 QLAIFIAIHTGMRIGEVKALTIKDVDFVHSKIKISKSMDGNGHIKVPKTSANNRVIKIDN 247

Query: 250 IGKETFFINNDK----QKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304
              + F           +++    +   K      G  + + H +R   A+     G + 
Sbjct: 248 RLLDVFKRFKGVSDLLVQVSNEAVNHVLKKDLKHIGAKDVTFHALRHSHASYLLSKGVSI 307

Query: 305 HELMATYGWKTVDQAE-TYTKGADRIR 330
             +    G  ++   E  Y      +R
Sbjct: 308 QYVSERLGHSSIAITEKVYAHMLQTLR 334


>gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308]
 gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19]
 gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870]
 gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686]
 gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10]
 gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94]
 gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292]
 gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1]
 gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68]
 gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella
           sp. F5/99]
 gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99]
 gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
 gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella
           melitensis biovar Abortus 2308]
 gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365]
 gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445]
 gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19]
 gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti
           CCM 4915]
 gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40]
 gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya]
 gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94]
 gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10]
 gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99]
 gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1]
 gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|323190786|gb|EFZ76055.1| phage integrase family protein [Escherichia coli RN587/1]
          Length = 339

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 99/335 (29%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP V      +G    Y  K  G    +               +       E   +   
Sbjct: 13  LPPRVRS----NG--YSYVWKPEGSTRTIGLGRVRETS------VAKVWQNYELEKAKLH 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R
Sbjct: 61  NIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKR 120

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A   L S+  ++ W   + YV  NPC  V    + T   R     D Q    +
Sbjct: 121 GLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTLKARTVYITDEQYAAIY 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                Q R+A E       R  D      Q + +    I+  KTG     E        +
Sbjct: 178 AEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGAKQIKEWSPRLRTAI 237

Query: 246 AMTPI----GKETFFINNDKQKMNATQFSIWFKAKAT----KAGVN--KSAHGVRKFSAT 295
            +         E         K+ A   + W+         KAGV    + H +      
Sbjct: 238 QLARNVTSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI------ 291

Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                G +       +     G KT +Q   Y + 
Sbjct: 292 --KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 319

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 85/270 (31%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R ++++  +      G     ++R +T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQNDLEDFCSFVGLTGADEFRAVTRAHVLAWRAQLETRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLA 195
           LF   +    VA  NP   V+RPK +T   +     D Q  +   +  +      + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPKIETNEGKTPALGDDQAKRLLDAPDTETVKGVRDRAI 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAMT---- 248
              LLY GLR  ++ R     L             K   I  + L     + +       
Sbjct: 159 LAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGKGKKIRFLPLHPVAAERIYAYLELD 218

Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                       +         + A          A  AG+       HG+R  +AT + 
Sbjct: 219 SARDTSSGPLFRSVRGKTTGAGVTANGLYTVVAHWARVAGIEVDGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           D  A   ++    G   +     Y +   R
Sbjct: 279 DHDADIAKVQMWLGHANISTTRLYDRRGQR 308


>gi|238061983|ref|ZP_04606692.1| phage integrase [Micromonospora sp. ATCC 39149]
 gi|237883794|gb|EEP72622.1| phage integrase [Micromonospora sp. ATCC 39149]
          Length = 398

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 97/353 (27%), Gaps = 33/353 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +   G+    +    GR    P              L  +   R     P      L  
Sbjct: 14  RKLPSGRYQARYPGPDGRMRNAPETFSRKSDADRYLTLVEAQMVRREWVDPDLAKVKLDD 73

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129
               + +     +L   +   +       I+   G  +  ++ T  +R           +
Sbjct: 74  YARRWIE--QRPNLRPRTVHLYGWLLEKHIVPYLGGTELGRLDTPMVRDWRAELLGNGVS 131

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S A +    +R +   AV+++ +       +    ++    RP                
Sbjct: 132 VSMAAKAYRLLRAVLMTAVKEDQILTRNPCQIPGADQEKAAERPVLTLAQVFKL-ADIVP 190

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------------I 232
            + R       +  LR  +      Q +     +I+ ++  T                  
Sbjct: 191 PRYRALVLVTAFGCLRWGEVSALQRQDIDTAAGTIRIRQAYTEQRGVGLVLGPPKSRAGR 250

Query: 233 ITVELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
            TV LP   ++++                F     + +     +     KA+ + +   N
Sbjct: 251 RTVTLPPAVVEVVRDHLAAEVDDNPDAFVFTTESGRPIWRGNLNKLIAWKASVSSIGQPN 310

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
              H +R    T++A  GA+  +LMA  G  +   A  Y          I  +
Sbjct: 311 LHFHDLRHTGNTLAARTGASTRDLMARMGHDSPQAALIYQHATAEADRAIAQA 363


>gi|209883391|ref|YP_002287248.1| phage integrase [Oligotropha carboxidovorans OM5]
 gi|209871587|gb|ACI91383.1| phage integrase [Oligotropha carboxidovorans OM5]
          Length = 451

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 96/370 (25%), Gaps = 45/370 (12%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           P         GK  Y   Y   G  RR  +      T   A   A               
Sbjct: 27  PGFGLRIFASGKRSYLIQYRAAGRTRRFTIGLHGVWTAETARQEAKVQLGRVAQGDNPSE 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDY 111
                 +  T+K L + Y K                  +           II   G    
Sbjct: 87  ERLLDHQAITVKELCAMYLKDLEAGLILGKGGRPKKATTIVSDTGRIHRHIIPLIGTRRV 146

Query: 112 RKITTKHIRSGVESRKHT--------------------PSSAIQFLTSMRVLFKWAVRQE 151
           + +    +   ++                           +A + L  +  +F +A+   
Sbjct: 147 KDLVKADMTKVLKDIMAGKTAVSVKTKKLRGKSVVTGGAGTATRTLGLVGGIFTYAMEAG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRC 206
            +  NP   + +PK      R    E     +        P+          +  +G R 
Sbjct: 207 IITANPVHGIRKPKDNVRDRRLTEAEYRTLGEILREAAETPKYGITVEIIRQIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETFFINNDKQKMN 265
           S+           +   ++ + +    ++       ++ L          ++   + + N
Sbjct: 267 SEMIGLKWTEADTDASCMRLEDSKEGASIRPIGLAVVEYLEERRKTATGSYVFPGQGEDN 326

Query: 266 A-TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           A   F   ++     + + + + H +R   A+I+ D G T   + A  G         Y 
Sbjct: 327 AFGGFPNHWRQIFRDSPLADVTPHVLRHSFASIANDLGFTEVTIAALVGHSKGTVTSKYI 386

Query: 324 KGADRIRLGI 333
              D   +  
Sbjct: 387 HSLDTALIMA 396


>gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
 gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus
           stearothermophilus]
          Length = 304

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           ++EY         + N+ IS+ +  +             +T   IR  ++          
Sbjct: 2   LNEYVTYLQEKGASPNTIISYTNDLNIFFNDLHIRPGDYVTMADIRKWIQQMLNPAEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L ++R  + WAV    +  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNALRSFYAWAVEHYKLEQNPMKDIQDLKSADEDNEKIMWLTEEEFEDLLH 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMAKKKSHVAESPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|9633001|ref|NP_050109.1| integrase [Lactobacillus phage phiadh]
 gi|408890|gb|AAA53568.1| integrase [Lactobacillus phage phiadh]
 gi|5730258|emb|CAB52479.1| integrase [Lactobacillus phage phiadh]
          Length = 385

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/373 (12%), Positives = 108/373 (28%), Gaps = 49/373 (13%)

Query: 17  RHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLK 72
           ++GK  Y  R          +           A   A +      ++ +N    K  T+ 
Sbjct: 13  KNGKFKYSIRYTDPSFLGVHKSSTTITKNTAKARNLADVKVKNMIQDKLNIQSIKQITMD 72

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
            LI + + +     LA  +  ++ +   +I R  G      ITT  + + + +  +    
Sbjct: 73  KLIEDLQTNMSNQGLAPKTLDTYFACLSKISRTFGKRSADSITTIELNTYINNLLYKDEL 132

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------- 180
           + ++A ++      LF +A++  Y   NP L V+   +     +    E+          
Sbjct: 133 SNATAHKYHVVFTKLFDFAIQFGYARKNPALKVKINFKNERAKKQDRIENWYLTDKELSK 192

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227
                   + +     F+ L  +G+R  + C   V+++  N  +                
Sbjct: 193 LFNHCLEKKRNDFYALFKMLYLTGMRLGEGCGLLVKNIFQNKETKLWYVNISGTLISTEG 252

Query: 228 KTGTIITVELPDGFMKLL----------------AMTPIGKETFFINNDKQKMNATQFSI 271
                          + +                  +         +N    +N +  S 
Sbjct: 253 HRNERQEFTKTSSSQRTIVLPKEAVVIYKEFSKGQNSNDFLFHNKYSNTNGPINTSAVSR 312

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           + +    +    K  ++H  R    +  A+ G     +    G    D     Y     +
Sbjct: 313 FLREFVNEQKWKKKATSHIFRHTHVSKLAEEGYPLSLITDRVGHANSDITRKIYLHVTHK 372

Query: 329 IRLG-IKNSRRIS 340
             L   +  +   
Sbjct: 373 QHLEFDEAMQNFE 385


>gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1]
 gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1]
          Length = 385

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 93/361 (25%), Gaps = 51/361 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           K     G   Y +          P P      P+            E       K  TL 
Sbjct: 16  KYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKKMTLC 73

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTP- 130
            L ++  ++A   ++  +++   E     +   K G      I     +      K    
Sbjct: 74  QLYAK--QNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGF 131

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             ++      S++  F  A++ + V  NP      E  +  T+     T+E  Q   SF 
Sbjct: 132 SYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQALLSFI 191

Query: 187 SEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229
              +     ++ +L    +GLR S+ C   V  +      +                   
Sbjct: 192 KTDNVYHKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVVIDHQLLKSKEQGYYIETP 251

Query: 230 ---------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                 +       L      K+  FIN       A  ++  F 
Sbjct: 252 KTKNGIRQVPLSRETIQAFQRVIRKRTKGKLIEIDGYKDFLFINPKGNPKVAIDYNALFV 311

Query: 275 AKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
               K   +         + H +R    T  A       +L    G   +      Y   
Sbjct: 312 RMVKKYNKHHEDNPLPHITPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISITMNWYAHA 371

Query: 326 A 326
           +
Sbjct: 372 S 372


>gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 293

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 75/303 (24%), Gaps = 27/303 (8%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95
                     A+       T  + ++        TLK ++  + K  H  SL    +  +
Sbjct: 3   KQFATKGEALAFERHTMEETESKPWLGESVD-RRTLKDVVELWFK-LHGKSLTAG-QHVY 59

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSSAIQFLTSMRV 142
           +     ++   G+     +T+K      + R               +P +     + +  
Sbjct: 60  DKLL-LMVDALGNPLATDLTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSS 118

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLL 200
           +F    R    +    L   R     E    W   +         +   P LA      L
Sbjct: 119 VFSELSRLGEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICL 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G R  ++       +     +    K     ++ +     + +               
Sbjct: 179 STGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ 238

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                   F    +  +      +  H +R   A     +G     L    G   +    
Sbjct: 239 --------FLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTM 290

Query: 321 TYT 323
            Y 
Sbjct: 291 RYA 293


>gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
 gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 92/288 (31%), Gaps = 26/288 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRK--SGDFDYRKIT 115
            +K  TL    +++ +          ++ ++       +   + + ++    D   ++IT
Sbjct: 124 EEKEKTLISYFTQHNEQYAKKVGKTATQKTYSRYELTKQRMIEFLQKEYKLSDIPVKEIT 183

Query: 116 TKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             HI +     +     + ++A++F+     +  +A +   ++        R        
Sbjct: 184 VTHIENFYLYLRQECEVSNNTAMKFVQRFHTILLFAQK-SGLSFIDPFGNFRFNFDKTDR 242

Query: 172 RPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              T+E++        +  +    R AF F  Y+GL   D      + ++  +   K   
Sbjct: 243 GYLTQEEIDTIYYKEFKSKRLEHVRDAFIFSCYTGLPYCDIYTLSSEDIKIGVDGKKWI- 301

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNK 284
                     + F+ LL +       +       +    ++  + + +    A    +NK
Sbjct: 302 -MKDRGKTGVESFIPLLQIPLDILAKYEGKLKDGRLLPVISNQKMNEYLAEIAAICQINK 360

Query: 285 SA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               H  R   AT      G     +    G   +   + Y +  DR 
Sbjct: 361 RITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRK 408


>gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482]
 gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482]
          Length = 412

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 29/293 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK-SGDFDYR--KITTKHIRSGVE 124
           L  +I++  +S         +  ++          ++K  G  D    ++  + IR  ++
Sbjct: 114 LDAIIAD-IESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFGELDEQFIREYMD 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +   +L  ++   + A +  +      +  + P++K    +  T+ED  
Sbjct: 173 FCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFL 232

Query: 181 QFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +       +      R  F F  Y+G   +D+     ++L  +       K       
Sbjct: 233 KIRDLEIPERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYH--RKK 290

Query: 236 ELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287
                 +KLL          +                    K+    +G+     +   H
Sbjct: 291 NKMLARVKLLPEALAMLEKYKDPTRPTLLPPQEFRVLRGNMKSLRVLSGISGISMDLVYH 350

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R   A++   + G     +    G   +   + Y +   +     ++  + 
Sbjct: 351 VGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKK--LFEDMDKF 401


>gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5]
 gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5]
          Length = 347

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T  +++Q 
Sbjct: 130 HSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVKKEYLTLNEVKQL 189

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 190 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 247

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +         T       + +  +  +   K+   KAG+    + HG R   A I    
Sbjct: 248 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISL 307

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 308 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 345


>gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
 gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697]
          Length = 407

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 79/295 (26%), Gaps = 22/295 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSG-- 122
            +  I  + K     +    +  S+    + +           D  +  +    I +   
Sbjct: 113 FRTFIEHFEKRVGV-NREKGTAQSYRYACNCVAAFIQEKYKLSDVPFTALNRSFIDNYDL 171

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R+    + +  +T +  +   A+ +  +  +P    E    + E  +  T  ++Q
Sbjct: 172 YLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEAEHPEREQ-KYLTAAELQ 230

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           +  +      +       F F  Y+G+   D CR   +   +  +               
Sbjct: 231 RLMTTPLHDPKLYHIRDLFLFSCYTGIPYGDMCRLTTEDLEVAEDGEVWIKTARKKTKID 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                    L +    ++           +  + +   K  A   G+ +    H  R   
Sbjct: 291 YEVPLLDIPLLILDKYRDMAPEGKLLPMYSNNELNRTLKRIAAICGIERKLVFHCGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           AT      G     +    G   +   + Y K  D         R +   +    
Sbjct: 351 ATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKIDMDT--RSLEEKIADRF 403


>gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     I  +       +  ++        K    K+ +NK  S H 
Sbjct: 66  KYRGANRDFVWQWLFPSKVISTDPRSGIERRHHLSEDSLQRAVKKALVKSEINKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|71280796|ref|YP_269073.1| phage integrase family site specific recombinase [Colwellia
           psychrerythraea 34H]
 gi|71146536|gb|AAZ27009.1| site-specific recombinase, phage integrase family [Colwellia
           psychrerythraea 34H]
          Length = 334

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 109/343 (31%), Gaps = 38/343 (11%)

Query: 1   MTPSLR-----LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           MT   +     +PP V K      K+ Y F+   G +IRL              A +   
Sbjct: 1   MTQQRKAEEKWMPPRVYKT-----KVAYVFQPKSGGKIRLCG---------LDVAKSLVW 46

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
              E   +      ++  L  ++  SA +   A  ++  +  Y   ++   G  D  K+ 
Sbjct: 47  MLYEKECASLDNFNSVASLFEKFFLSASFIDKAPRTQKDYLGYKKDLLIAFGKMDINKVE 106

Query: 116 TKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            KH+R  ++ +      S A +  ++++ +F WA  +  + +NPC+ V++   K      
Sbjct: 107 PKHVRMFMDKKAVKSGISQANRHKSALQSIFSWAYERGKIKVNPCVGVKKFTEKARDRYV 166

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              E                 A E       R  D  R   + L  +   IK  KTG   
Sbjct: 167 TDVEYQALLNHAC---PVIYAAAEISYLCMARRGDVERLRKEQLIADGIYIKQGKTGKKQ 223

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWF----KAKATKAG--V 282
             E      K ++       +        + N        F   +    +      G  +
Sbjct: 224 IKEWSPRLKKAISHANKVNPSISSMYVIHQFNGSGYGTNGFRDRWVSTMERARKSTGYLM 283

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           + + H ++    +          E     G  T+ Q   Y + 
Sbjct: 284 DFTFHDLKAKGISDF---EGNLEEKRNAAGHTTIKQTADYDRK 323


>gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)]
          Length = 296

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 197 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT   + GA    +    G   V   + YT   D
Sbjct: 257 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 290


>gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5]
 gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5]
          Length = 352

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 104/347 (29%), Gaps = 64/347 (18%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFD 110
             +R    +  + P +++  + ++        + +V++  ++ +    ++      G  +
Sbjct: 3   KRQRGTREAHEELPASMREAVDDFADHLSRVRNRSVHTVRAYVTDLVSLLDHAVRMGCAE 62

Query: 111 YRKITTKHIRSGVESRKH-------------------------------------TPSSA 133
             ++    +RS +  ++                                      +P + 
Sbjct: 63  LPELDLAVVRSWLAKQRTMGAARTTMARRAAAARTFSAWAHRTGLLADDVAAPLASPRAR 122

Query: 134 IQFLTSMRV-----LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
            +  T +R      L +   RQ         S   P+    G    T  +    +     
Sbjct: 123 RELPTVLRADQAAALVEAPSRQRRSPPGADRSTVHPEGTGLGRDHGTAAEPASAEPAGDG 182

Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242
                    RL  E L  +G+R S++C   V  +      ++   K G    V       
Sbjct: 183 PPDAVLLRDRLLLELLYGTGVRISEACGLDVSDVDQARRVVRVLGKGGRERAVPYGVPAQ 242

Query: 243 KLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
           + L           +               ++N T         A  AGV + + HG+R 
Sbjct: 243 RALDAWLRDGRPALLAPGSGRALLLGARGGRLNPTTARRIVSGWAGAAGVPRVTPHGLRH 302

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            +AT   + GA    +    G  ++   + YT    +R+R   + + 
Sbjct: 303 SAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAH 349


>gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 348

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 88/319 (27%), Gaps = 65/319 (20%)

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             L  ++  +++  +   +    G    +K+    ++       + R    ++     T 
Sbjct: 7   RGLKDSTFQNYKYTYTLNVKPSFGRMLIKKVRKSDVKRFYNSLADERNLKATTIDGIHTV 66

Query: 140 MRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +  +F  AV   Y+  NPC +      +    KTE  R  T+++   F +F  +  + R 
Sbjct: 67  LHQVFDLAVDDNYIRSNPCDNVLRELKQSHVFKTEKRRGLTRQEQDLFLNFLKKSEKYRH 126

Query: 195 AF---EFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKTG 230
            +     ++ +GLR  ++       +                              +   
Sbjct: 127 WYPIFAIMIGTGLRVGEATGLRWCDIDLEDGFIDVNHTLVYYQHEVNGCYFNINTPKTEA 186

Query: 231 TIITVELPDGFMKL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
               V + D   +                LA      +  F+N      + +  +   + 
Sbjct: 187 GRRIVPMLDFVKEAFLEEKHRQEREGIRSLAQVDGYADFIFVNRFGMLQHQSTLNKAIRR 246

Query: 276 KATKAG--------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320
                                + S H +R    T   +AG     +  T G   +     
Sbjct: 247 ITRDCNDEVLLKDPEATVLLPHFSCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLN 306

Query: 321 TYTKGA-DRIRLGIKNSRR 338
            Y     D  +   +   +
Sbjct: 307 IYADVTKDLKKSEFEGLDK 325


>gi|262039771|ref|ZP_06013049.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042884|gb|EEW43877.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 366

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 104/334 (31%), Gaps = 35/334 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             ++GK   Y  + +  +         ++    ++ +                  T+  L
Sbjct: 24  VKQNGK---YVHREN--KTFSKNTLAKSWGAKRVAYIEEHGLPEPEKEMKEISVITVGDL 78

Query: 75  ISEYRKSAHWGSLAVNSR-ISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT--- 129
           +++Y    +       +   S  S    +      +     +T KHI    ++RK     
Sbjct: 79  LTQYENHPNI------TLGASKRSSLRTLGRSFLAEIKLTDLTAKHIIEHCQTRKAQGLA 132

Query: 130 PSSAIQFLTSMRVLF-----------KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           PS+  Q ++ + V                   +       + +  P ++       T+ D
Sbjct: 133 PSTISQDVSYLSVALEAAKPLFGAPANLNELSDAKVWLRNMGITGPSQRRSRRASATEVD 192

Query: 179 MQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                          G+     F F + + +R  + CR   + + +   S+  +      
Sbjct: 193 RLYEVLKVKAETAYTGAPLHQIFMFSILTCMRVGEVCRLLWEDVDDIQRSVIVRDRKDPR 252

Query: 234 TVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291
                   + LL            +++     N    +  ++    + G+ +   H +R+
Sbjct: 253 KKIGNHMLVPLLGDAWRILTMQPRVDDRVFPFNPKSITAMYRRVRDELGIEDLRYHDLRR 312

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
             A+   +AG +  E+    G ++++   + YT+
Sbjct: 313 EGASRLFEAGFSIEEVAQVTGHRSLNILWQVYTE 346


>gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
 gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483]
          Length = 318

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 45/304 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128
           L  +   +  S     +  +S  S++  Y  ++    G     +++ K I   +      
Sbjct: 3   LDDVYKAWI-SVKKRQVKTSSLASYQQIYVKKLSPMLGCMGVGELSKKVIVPFMNDLMDN 61

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              +       L  +++L ++A  +       +        +      +  R    E  +
Sbjct: 62  SGLSVKYCNDILIVLKMLIRFADEELDLEVHNITWKMVWPSKNKIAAQKLERYSPAEYKK 121

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---- 236
                 +  S   L     + SG+R  + C    + +  +  +I   KT   I +     
Sbjct: 122 IVDYVLANPSPRNLGILLTICSGMRIGEVCALQWKDIDLDKKTIHICKTLERIYMPGEDG 181

Query: 237 -----------------LPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFS 270
                              D ++ +L                + +     +Q        
Sbjct: 182 TFNKAKTHIEIGPPKTSNSDRYIPILKNIFPLVKKFSAVCNPDYYVCTCGEQYTEPRTLR 241

Query: 271 IWFKA-KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            +++     K  ++     HG+R   AT   +       +    G   V      Y   +
Sbjct: 242 NYYEKFILEKVKLDHCIKYHGLRHTFATTLIENKIDVKTVSTILGHSDVGTTLNIYVHPS 301

Query: 327 DRIR 330
           +  +
Sbjct: 302 EEAK 305


>gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGHDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
 gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 84/320 (26%), Gaps = 37/320 (11%)

Query: 65  RKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKI 114
              P  L  L+  +  S        + ++  ++      + +           D     +
Sbjct: 3   TATPKALFALVESFFISYLPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDL 62

Query: 115 TTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
               I   ++     R ++ ++      ++R  FK  +R +         V     K   
Sbjct: 63  NADTIAGFLDHLESERSNSAATRNCRRAALRSFFKHLLRNDLDNALRYTRVLALPAKRMK 122

Query: 171 IRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +P T          +        +G +      FL  S  R S++     + LQ     
Sbjct: 123 QKPVTYLEAVDVRAIIGNPDRRTHDGWRDHTLLLFLYNSAARVSEATGLLWRDLQLTPPR 182

Query: 224 IKT--QKTGTIITVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAK 276
                 K      V +       L            E  F+N   Q +     +      
Sbjct: 183 QVRLRGKGRKERLVPIWRETADALGRLRKLSGGADHEHVFVNRHNQPLTRDGVAYILAKH 242

Query: 277 A--------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-AD 327
           A          A    + H +R  +A     +G     +    G  ++     Y      
Sbjct: 243 AASVARGRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLK 302

Query: 328 RIRLGIKNSRRISSVVDSDD 347
             R  ++   + + +  + D
Sbjct: 303 MRRDALETFWKHAGIEATHD 322


>gi|11138332|gb|AAG31327.1|AF182207_1 ORF 427 [Lactobacillus phage mv4]
 gi|684925|gb|AAC48859.1| recombinase [Lactobacillus phage mv4]
 gi|1093667|prf||2104328C recombinase
          Length = 427

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 89/327 (27%), Gaps = 36/327 (11%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99
                 AY          +    +   +  ++      Y+      S A  +  S+    
Sbjct: 101 TPNASAAYNKLKAQGLAAKAPKKATTDEGWSV--WFDSYKGGVKESS-ANKTLTSYRV-- 155

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
             I    GD     I T  ++    +      +    +  +  LF++A R +Y   NP  
Sbjct: 156 -HIKPAFGDKMISSIKTATVQLWANNLATKLVNYKVVVRLLGTLFEFAKRLDYCKDNPVK 214

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLR-------- 205
            +  PK  +   R  +     + +           GS+  + F  L  +GLR        
Sbjct: 215 QIIMPKATSRPRRDISTNYYNRDELQQFLQAAKEVGSRTYVFFLLLATTGLRKRRSTSPG 274

Query: 206 ----------CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
                      S S +     L         +    I TV L D    +L          
Sbjct: 275 LVGHRLRSKEKSPSLKTLAYGLGGKYGIQPPKTKAGIRTVPLTDQMAAVLKDYHSDLCPH 334

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAH--ELMAT 310
             +              +     K   +      HG R   A++   A  +    ++ A 
Sbjct: 335 LFHTLDGDYLRLSKPDQWLQAVYKHDPDLRQIRIHGFRHTFASLLITADPSIKPTDVQAI 394

Query: 311 YGWKTVDQAE-TYTKGADRIRLGIKNS 336
            G +++D     Y       R  ++  
Sbjct: 395 LGHESIDITMEIYMHATQEGRRNVERV 421


>gi|304321832|ref|YP_003855475.1| hypothetical protein PB2503_11439 [Parvularcula bermudensis
           HTCC2503]
 gi|303300734|gb|ADM10333.1| hypothetical protein PB2503_11439 [Parvularcula bermudensis
           HTCC2503]
          Length = 388

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 98/314 (31%), Gaps = 17/314 (5%)

Query: 25  FRKGHGRRIRL--PYPHESTFIPAYMSALTG--STPKREYINSPRKKPTTLKWLISEYRK 80
              G GR + L     +E +   A   A+       + E     +    TL+  + +Y K
Sbjct: 48  VNDGTGRAVSLMIGRANEVSLRTARQQAIEANVMARRGEDPRLRKDGIPTLRQALEKYLK 107

Query: 81  SAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQ 135
            A    L   +  S++S        + K GD     +  +      E       P++A  
Sbjct: 108 -ARGDDLRPKTHQSYKSLTVGPKAPLAKIGDLPMHLLDRQTCAKLHEELAEKRGPATANG 166

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
            L   R+L     R   +  NP     R    R  +   P         +    E  + R
Sbjct: 167 ALRLARLLLNDVARVYDLPPNPVTRGVRFAKDRTRDWAVPLEGMPTLWARLDAMEKVKKR 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
           L ++ +L +GLR +++      +L +    +     G             L+    + + 
Sbjct: 227 LCWQTMLMTGLRSNEARSMRWANLDDQGVLLVPSPKGGEERAFRVPIPWSLIEDLGVLRG 286

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                       A   + +            S H +R    T++ +AG +    M     
Sbjct: 287 KSEFVFP-----ARTRTGYIDQLKRSEKFPYSPHMMRHTYRTLALEAGVSVETAMILLNH 341

Query: 314 KTVDQAETYTKGAD 327
           KT D +  Y   A+
Sbjct: 342 KTNDISSRYVTRAN 355


>gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 371

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 93  ADFLEYYRKQLRKHDQK------WEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLLSAK 146

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + T +SA  + ++ R   K   R   +  N    +E+ + +       + E++ 
Sbjct: 147 KLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVEELY 206

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    + A  F   + LR SD      + + +     K     T         
Sbjct: 207 KLAETPCKKPILKTASLFSCMTSLRISDILSLCWKDIVDYSAGGKCVHIITQKNKAEDII 266

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +   I  K     AG+ K  + H  R+  AT+ A
Sbjct: 267 PISEEALGLIGYNSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQA 326

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 327 AAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 365


>gi|237715509|ref|ZP_04545990.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
 gi|229444218|gb|EEO50009.1| tyrosine type site-specific recombinase [Bacteroides sp. D1]
          Length = 301

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124
            +  +  Y K       A ++       ++S    +  K    D    ++    I     
Sbjct: 4   FREQLESY-KEKVGKEKAKSTYLGLVADYKSALLFLKDKKNVEDIALDELDKDFIEDYYN 62

Query: 125 SRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T  SA       + +M+ L   A  +  + ++P                 ++E++Q
Sbjct: 63  WMLGTCGSASSTAFGRVNTMKWLMHIAQEKGLIKVHPFTGFGCKPGYK-RRSFLSEEELQ 121

Query: 181 QFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGT 231
           +         +    R    F+ ++GL  +D      +++         +   + +    
Sbjct: 122 RLIHVELRYKRQQAMRDMLLFMCFTGLAFADLKAITYKNIHTDSDGGTWLMGNRIKTGVA 181

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGV 289
            +   LP     +       K+    +      +       FK    K    VN + H  
Sbjct: 182 YVVKLLPIAIELVEKYKGDNKKKDSPDCVFPVGDYETMKSSFKVLGKKCDCNVNITPHIG 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A ++   G     L    G K++   + Y +  +  
Sbjct: 242 RHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK 281


>gi|167646005|ref|YP_001683668.1| integrase family protein [Caulobacter sp. K31]
 gi|167348435|gb|ABZ71170.1| integrase family protein [Caulobacter sp. K31]
          Length = 350

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 91/338 (26%), Gaps = 32/338 (9%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKW 73
           +   G+     R+    R      H+      + +A      +     + R     +L  
Sbjct: 6   KLPSGEWRAIVRRKG--RYISETFHQREHARRWATAAEADIDRGAKPKTTRIAGKESLAD 63

Query: 74  LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
           LI  +             ++++  S     +   G   + +I    + +  + R    + 
Sbjct: 64  LIDLHIADLKSVGKRIGRTKLAMLSMLK--VDPIGKMKFAEIDRLALIAFGKRRAKGGAG 121

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINP--------CLSVERPKRKTEGIRPWTKEDMQQ 181
             +   ++ +++ +         +   P         L+      K+        +D  +
Sbjct: 122 PMTVGMYIGTIKTVLVCVAALHDIETQPDQVDVARVALTHLGLVGKSNERDRRPTDDELE 181

Query: 182 FKSFWSEGSQPRLAFE-----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                 +  +P  A       F + + +R  + CR            +  +        +
Sbjct: 182 RLFHHFDARRPTAAPMSRIIKFAIATAMRQEEICRVVWDDYNPRTKMLVIRDRKDPRQKD 241

Query: 237 LPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
             D  + LLA         +                 N+   S  F    T  G+ +   
Sbjct: 242 GNDQKIPLLAAAGYDAVALIEEQRALRTNACLQIFPYNSKTLSAAFTRACTTLGIKDLHF 301

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R    +   + G    +     G K     + YT 
Sbjct: 302 HDLRHEGTSRLFELGLRIEQAALVSGHKDWKMLKRYTH 339


>gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
 gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681]
          Length = 281

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 81/282 (28%), Gaps = 17/282 (6%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR 126
             I  +         + N+   +     Q I         G   + ++     +  ++S 
Sbjct: 2   EYIQGFEAHLRSKDRSENTVSCYIRDVLQFIAWYRGKTENGLDQWIELDGIEYKKYLQST 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                +  + + S+ V  +W  +Q Y+     +   R K   +      K+  +      
Sbjct: 62  NQAILTINRKIASVNVFAQWMHQQGYIKEEIHIEAVRNKVVRQYKGLAEKDLWKLRNEIH 121

Query: 187 SEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------IITVELP 238
             G++  +    LL  +G+R S+     ++ ++ +      +  G         +  ++ 
Sbjct: 122 RMGNRMHICMIELLLGTGIRVSELVGIKLKDIEISERKGLLKVFGKGNSFRTIPLNKDVR 181

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
               + L + P  +  +     +  +     ++       +  V  + H +R        
Sbjct: 182 KAITRYLEVRPHSESEYLCIGQRGSLERNAINLILNKYGDRINVKVTPHMLRHTLGYKLV 241

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
                   +    G   V     YT    +     +    I 
Sbjct: 242 -KTTPLTTIQQILGHDHVATTNIYTLTTQQD--MAEALANIE 280


>gi|257062249|ref|YP_003142307.1| integrase family protein [Cyanothece sp. PCC 8802]
 gi|256592509|gb|ACV03359.1| integrase family protein [Cyanothece sp. PCC 8802]
          Length = 316

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 85/282 (30%), Gaps = 32/282 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE-------SRKHTPSSAIQ 135
            SL+  S I+ +   D +      GD D   +    +R            ++++ ++  +
Sbjct: 31  HSLSPGSVITMKQSLDVMASLLTEGDCDAMTLDWAKLRYHHTATIRRELKQRYSATTTNK 90

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFW 186
            L ++R + + A+R + +                  R                   K   
Sbjct: 91  MLCALRRVLEEALRLDLMEAADYAKAVDLPSVKGKKRLRGRALTALEIEGLMSVCLKDSS 150

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVE-------- 236
             G +       L  +GLR ++     V+   ++     ++  K     TV         
Sbjct: 151 VLGVRDLALMGILRGTGLRRAELVALEVKDFTSDGGVLEVRGGKGDKDRTVYLPESVIGL 210

Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
                      +   +         +++ +N        K +A +AG+   S H  R+  
Sbjct: 211 VEDWLEVRGAFSGALLCPIRKGGRVEQRHLNPDAVLKIVKKRALEAGIESFSPHDFRRTF 270

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
            +   DAG     +    G  + +    Y +  +   R  ++
Sbjct: 271 CSDLLDAGVDLVTVQKLAGHASPETTAKYDRRGEETKRRAVQ 312


>gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
 gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC
           4342]
          Length = 323

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 88/291 (30%), Gaps = 44/291 (15%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTP 130
           +  +        L+  +  S++                 D  K+   HIR+ ++  +   
Sbjct: 8   VENFLLHCDAKHLSRKTIRSYDQTLKLFASYLERELKITDVDKVKPLHIRTYIKYLRERG 67

Query: 131 ----------------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                                       ++   +L +++V F +   +E +A NP  ++E
Sbjct: 68  KYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIE 127

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--H 216
             K + +     + +++++           G +  +  + +L +G+R  + C    +   
Sbjct: 128 SIKPQRKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDLD 187

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFS 270
           ++N    I   K      V   +     L      ++ F                   F 
Sbjct: 188 IKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRDRFSDAEYLFPTIRGTMLNVNNFE 247

Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              ++   K  V+ + H +R   A      G     L    G  +V+  + 
Sbjct: 248 ASIRSIGKKVRVHFTPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQR 298


>gi|254482789|ref|ZP_05096026.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
 gi|214036870|gb|EEB77540.1| site-specific recombinase, phage integrase family [marine gamma
           proteobacterium HTCC2148]
          Length = 421

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 108/344 (31%), Gaps = 27/344 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           V ++    G      ++G G+   +            +S L       E     R+   T
Sbjct: 48  VYRKAKGKGNKP--VKRGLGKFPAMSVDEARAGAIDAISQLNKGKNPNESEREARRLKIT 105

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129
           L  +   Y        L+ N+  +++   ++ ++         I    +        K +
Sbjct: 106 LDDVFKAYLAE-RGNQLSENTVSNYKGVVNKHLKDWKSKQLSSINRDLVAKKHAKISKES 164

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+A + +  +R LF +A      +    L  + P ++    R W +E+ +      ++ 
Sbjct: 165 QSAANKTMRVLRALFNYANGAYESSDGRSLFPDNPVQRLTHTRTWNREERRDNTIKRTQL 224

Query: 190 SQPRLAFE------------------FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KT 229
                A                    F+L +GLR  ++    V  +     S      K 
Sbjct: 225 ESWFKAVLKLSESEDEFERTVGDYLQFVLLTGLRRREATSLKVADVDFKERSFTIYLTKN 284

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNKSAHG 288
              +++ + D  +KLL        T +I +                     + V+ + H 
Sbjct: 285 HQPLSLPMSDYTLKLLKRRCDTTSTEYIFHGTGSSGRLNDPRRLINTLRVSSEVDFTIHD 344

Query: 289 VRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIRL 331
           +R+   T++     +A+ L          D    Y +  D  RL
Sbjct: 345 LRRTFITLAESLDVSAYALKRLVNHSPGGDVTAGYIR-MDVERL 387


>gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152]
 gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 81/275 (29%), Gaps = 17/275 (6%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            +K P +    +  Y        L   +      + ++I R+ G      IT   + S  
Sbjct: 2   RKKTPASWAPTLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWA 61

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +     +   + +S    ++W +       NP     R        RP      +   
Sbjct: 62  GQQNWATETRRSYRSSCMKFWRWGIASGLTDTNPVEEWPRIPGAAANPRPAPDRVYRAAL 121

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDG 240
           +      + R+        GLR ++  +  ++ L  +          K G    + +PD 
Sbjct: 122 AA--ADPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDD 179

Query: 241 FMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHG 288
              L+               +   F   D   ++A    +       K   +G   + H 
Sbjct: 180 IAALIRAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHK 239

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT +  A      +    G  +V   + YT
Sbjct: 240 LRHRFATTAYRATRDIRAVQEALGHSSVATTQIYT 274


>gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 417

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 84/278 (30%), Gaps = 26/278 (9%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---SRKHT 129
            EY        LA  +R        +++      G  D   I  +H+R            
Sbjct: 129 DEYMDHV--RGLAPKTRSIALRIVGRLLTARFGKGAVDVAAIKPEHVRRFFAGQAKLYSK 186

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           P++A   + S+R  F++      +      +V  P   +     +  T E++++      
Sbjct: 187 PANAGSVVASLRGYFRYRASLGDLVHGLIGAVSYPVNWSLSSLPKSLTAEEVERLIRSLD 246

Query: 188 EGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----- 238
           +  +            L  GLR  +  R  +  +     ++  + T       LP     
Sbjct: 247 QQGRSMRRADAIVRCALDLGLRSGEIARLSLDDIDWQAGTLVLRHTKGRREDMLPLPATT 306

Query: 239 -DGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
            +     L                I    Q           +   T+AG+  + +H +R 
Sbjct: 307 GEAIAAYLEQERPKTSNRAIFVRHIAPRDQPAGTDLVRKTIRQAFTRAGLPYTRSHLLRH 366

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             A     +G++  E+      ++++    Y K   R 
Sbjct: 367 TMANRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRK 404


>gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1]
 gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1]
          Length = 380

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/367 (10%), Positives = 93/367 (25%), Gaps = 56/367 (15%)

Query: 17  RHGKIIYYFRKG-----HGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + GK+ +  R          R+  L               L         ++        
Sbjct: 7   KSGKVNFIERYKNPYTEKWSRVSVLMEKDTPRTRKEAQKQLE--IKIANILSELESSEML 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
              L  ++        +  +S  S      +I    G      KI  K+++S ++    +
Sbjct: 65  FTELFDQWWSFYK-QEIKRSSIASLNGNIKEIKDDFGIGIKVSKIDPKYVQSYLDRLDCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180
            +   +  + + + F +A+    +  NP    + P+ +                      
Sbjct: 124 RNKKERNKSMLNLAFDYAIDLGIIKDNPARRAKLPRVQKTLEDWKKVGQKYLEEDEIKLL 183

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
            +         +  L  EF+  +G R  ++      ++     +++   T          
Sbjct: 184 LKELYRRPSTYRIGLLSEFMSLNGCRIGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKG 243

Query: 233 -----------ITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQ 268
                          +     ++L                       F   +   +    
Sbjct: 244 EKTSPKTLASYRETVMTTREKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNS 303

Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
           F++  K    +         ++H  R    +  A+       +M   G        + YT
Sbjct: 304 FNLALKKANERLETPIQKNLTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYT 363

Query: 324 KGADRIR 330
               +++
Sbjct: 364 HITKQMK 370


>gi|262047165|ref|ZP_06020123.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|260572410|gb|EEX28972.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 334

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 89/315 (28%), Gaps = 30/315 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLA 88
           G+R  L    ++          + +   ++       +  T  K     + ++     + 
Sbjct: 5   GKRDYLTKSFKTEKEAKVW---STTLELQKAKGQAIAQQNTLFKDFYYLFVQTVKVHDVR 61

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146
             +  ++      I          K+    ++S ++     H+  +  + L  +R   ++
Sbjct: 62  KATFDNYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKKTVTELLKKIRTALRY 121

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSG 203
           A  + Y+  +    ++   ++       +          +      ++  L     + +G
Sbjct: 122 AYVKGYIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHTDNEFNLMVLLEISTG 181

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTIITVELPDGFMKLLAMT 248
           LR  +      + +  +                     +   +  +V +P     LL   
Sbjct: 182 LRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRRSVTIPKNIYDLLKDI 241

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                 +  +    K +        K    K G+   + HG+R   A+           +
Sbjct: 242 SQKDSGYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDTHASFLFSNNIPLSYV 296

Query: 308 MATYGWKTVDQAETY 322
               G  ++   E Y
Sbjct: 297 SRRLGHDSILTTEKY 311


>gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7]
          Length = 311

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              ++  +R ++  AV   E   +           +++  +   +E +++  +   E   
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPQEMLERMFNAELEDQS 132

Query: 192 PRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R           +SG+   D      +++++ I     QK+G++I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                    +                         F+   ++ A   G  +  +++ +R 
Sbjct: 193 LSACTAKESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLRSLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKVNRNCFESV 303


>gi|242239786|ref|YP_002987967.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242131843|gb|ACS86145.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 416

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 93/349 (26%), Gaps = 32/349 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSP 64
             +       G   + FR  H    +R  L +       +         +    E    P
Sbjct: 29  GGLLLFVKPSGTKTWRFRYYHPQTKKRTTLTFGSYPALSLADARQMREAAKALLEKGIDP 88

Query: 65  RKKPT------------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
           +                T   + +++ +      LA N+           +     +   
Sbjct: 89  QFHQQQQREQEQAISLNTFAKVAADWYEVKKSQPLAANTIKDIWRSLEKYVFPFIANQPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++T +H  + +E  + +    +  +    +  +  +AV    +  NP   + +  +   
Sbjct: 149 SQLTARHFITALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPV 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T          +  S  S   Q RL  E+ L +  R +++       +     + 
Sbjct: 209 KTHMPTIRPEALPSLMKTLSVASIELQTRLLIEWQLLTVARPAEAAETRWSEIDLTQNTW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATK 279
                   +    +     + LA+    K                          A   +
Sbjct: 269 TIPAGRMKMRREHVIPLLPQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + +AG     + A       ++    Y + 
Sbjct: 329 MGYKGVLVSHGLRAIFSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|323340761|ref|ZP_08081013.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
 gi|323091884|gb|EFZ34504.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644]
          Length = 305

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 88/285 (30%), Gaps = 26/285 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           RKK   L    +++      G++   +   +     +  +I  +    D  ++  + I +
Sbjct: 2   RKKQILLHDYFAKWIDVYKEGAVRQVTLNKYWSSHRHLKKIAPELKLIDVNRLEYQQILN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++       ++ +   A  + Y+  +P   V    + +   +     + + 
Sbjct: 62  KFADSHEKATTMDFHHQ-LKAMLLDAYDEGYLKRDPTRKVVVKGKHSSEKKTKYLNEFEL 120

Query: 182 FKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
                S        +++++     +GLR  ++       +      I   KT        
Sbjct: 121 KLLLRSLDLSNYENYDWIILLIAKTGLRFGEALGLTKDDIDFEQQIITVNKTWDYKSCSG 180

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    ++  V +       L+       +      ++++  +  +   K    K  
Sbjct: 181 GFKPTKNASSVRKVSIDWKLAMQLSSMVNELPSDQPIFIQKRIFNSTVNSLLKKHCEKLE 240

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   S HG+R   A++   AG +   +    G   +    +TY  
Sbjct: 241 IPVISIHGLRHTHASLLLFAGVSVASVAKRLGHADMTTTQQTYLH 285


>gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
 gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018]
          Length = 350

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 28/228 (12%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC----------------LSVERPKRKTEGIRPW 174
           +S      ++   F +  +Q                           + P    +     
Sbjct: 117 ASKKNHRIALLSFFSYIDKQNQNEDGSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDR 176

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGT 231
             + +  F+   + G + RL  + ++Y+G+R S+     ++ +    N        K   
Sbjct: 177 FLKAIDDFEFTDNTGFRNRLIIKIIIYTGIRVSEILNLRIKDIFKEDNVYMLQIRGKGNK 236

Query: 232 IITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
              V +    ++      L M     +    N   +++     S   +     AG+ K  
Sbjct: 237 PRVVMIKSSIIEKELQNWLDMRVCNSDLLVCNQKGERLTQAYISRVVENILISAGIRKEK 296

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
             AH +R   AT+          +    G   ++ +  YT   D+ RL
Sbjct: 297 NGAHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTH-FDKERL 343


>gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)]
          Length = 291

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 192 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT   + GA    +    G   V   + YT   D
Sbjct: 252 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 285


>gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 410

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 31/316 (9%)

Query: 42  TFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRI 93
                Y   +       +   ++       K  TL  L  ++          S A  +  
Sbjct: 75  EVNRRYQELMQTDGYVTAAKLKDAYLGIGVKQETLLKLFEQHNAEFAKKVGHSRAKGTFN 134

Query: 94  SFESYFDQIIRKS------GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVL 143
            +++    I           D   +++    I           K   ++   ++  ++ +
Sbjct: 135 RYQTVCKHIREFLPHTYKREDIPLKELNLTFINDFEYFLRTVKKCRTNTVWGYMIVLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-- 201
              A     +  NP         ++      T++++Q       +     L  +  L+  
Sbjct: 195 ISIARNDGRLPFNPFAGYIN-SPESVDRGYLTQQEIQTLMDAPMKNKTHELVRDLFLFSV 253

Query: 202 -SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +GL  SD       +LQ          T         +  ++LL +     E +     
Sbjct: 254 FTGLAYSDVKNLTTDNLQTFFDGNLWIIT--RRKKTNTESNIRLLDVPLRIIEKYKGLTR 311

Query: 261 KQK----MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI-SADAGATAHELMATYGW 313
             +     +    +   K    + G     S H  R  +AT      G     +    G 
Sbjct: 312 DNRVFPVPSNGSCNKVLKEIGKQCGFKTRLSTHVARHTNATTVLLSHGVPIETVSRLLGH 371

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K  ++ 
Sbjct: 372 TNIKTTQIYAKITNQK 387


>gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574]
 gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574]
          Length = 420

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 98/354 (27%), Gaps = 44/354 (12%)

Query: 31  RRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKK-----PTTLKWLISEYRKSAHW 84
           +RI          +   Y   LT        +   R +     PTTL  +     +S   
Sbjct: 58  KRINKRLAEFKELVEKTYRDLLTRDGMVSVELIKNRLQGIATHPTTLLAMSKAELQSVKE 117

Query: 85  ---GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSA 133
               S A ++  +       +     D   + I    I        R  ++ +    ++ 
Sbjct: 118 CVGKSKAESTYQNLCYSDKLLCEFVKDKGVKDIPVITITEDLFEEYRFYLKKQGLAAATI 177

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQ 191
            ++L  +  L   A+ Q  +  NP  + +  K + +    +      +   K    E  Q
Sbjct: 178 NRYLCWLSRLMYRAISQRLIRCNPFENTKYEKTEQKIRFLQKNNVAKLMALKVNDKEAEQ 237

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAM 247
            R  F F  ++GL  +D       H+Q      K  +     T            + +  
Sbjct: 238 ARRMFIFACFTGLAIADMEHLQYGHIQTAADGQKYIRKERQKTKVEFVVPLHPIAEAIIE 297

Query: 248 TPIGKE-----------------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288
               ++                            + +  +          G+ +    H 
Sbjct: 298 HCKAEQERNGGMQSVKEKGESETMTDCLVFPHDCSRSVMAAKLSIVGRACGIRERLSYHM 357

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
            R    T+S  AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 358 ARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVTDNK--ISEDMDRLIRK 409


>gi|313681225|ref|YP_004058963.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154085|gb|ADR32763.1| integrase family protein [Sulfuricurvum kujiense DSM 16994]
          Length = 297

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 92/280 (32%), Gaps = 26/280 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
               +  S    ++   +   + S     I+   GD   R++   ++         + T 
Sbjct: 4   YADLFMDSKRQTTV-PRTHERYLSIIKHSILPVFGDSPIRELKVSNVEKWRNDLLKRFTA 62

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  ++   +R +F+ A+  E +  NP  +++  K K   + P+   +++          
Sbjct: 63  KTVKEYQIVLRGIFQKALHDEEIGKNPIDALDSLKVKKPHVVPFMPYEVKLILDTAQGWF 122

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ITVELP 238
           +  LA  F+  +G+R  +      +++      I    +                 + + 
Sbjct: 123 KNYLALGFM--TGMRVGEIVALKWENVNLKKREIYVCASRIEGVEGTTKTQSSIRYIPII 180

Query: 239 DGFMKLLAMTP----IGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKS-AHGVRKF 292
           D  +  L          +  F     +   +        +K+   +  ++    + +R  
Sbjct: 181 DTLVPFLEAQKKLSGDKEYVFVNQYGEVFYDYKTIGANQWKSILKECKLDHRRMYEMRHT 240

Query: 293 SATISADAG-ATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            AT    +G  + +E+ +  G  T     E YT+     R
Sbjct: 241 CATNLLMSGQYSVNEIASILGHTTPQMLFERYTRNISAER 280


>gi|50121674|ref|YP_050841.1| prophage integrase [Pectobacterium atrosepticum SCRI1043]
 gi|49612200|emb|CAG75650.1| prophage integrase [Pectobacterium atrosepticum SCRI1043]
          Length = 416

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 92/349 (26%), Gaps = 32/349 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSP 64
             +       G   + FR       +R  L +       +         +    E    P
Sbjct: 29  GGLLLFVKPSGTKTWRFRYYQPQTKKRTTLTFGSYPAISLADARQMREAAKALLEKSIDP 88

Query: 65  RKKPT------------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
           +                T   + +++ +      LA N+           +    G    
Sbjct: 89  QFHQQQQREQEQAINLNTFAKVSADWYELKKSQPLAENTIKDIWRSLEKYVFPFIGTLPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++T +H  S +E  + +    +  +    +  +  +AV    +  NP   + +  +   
Sbjct: 149 TQLTARHFISALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPV 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T          +  S  S   Q RL  E+ L +  R +++       +     + 
Sbjct: 209 KTHMPTIRPEALPGLMKTLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLKDNTW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATK 279
                   +    +     + LA+    K            +             A   +
Sbjct: 269 TIPAGRMKMRRDHIIPLPPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + + G     + A       ++    Y + 
Sbjct: 329 MGYKGVLVSHGLRAIFSTAANEEGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|50085310|ref|YP_046820.1| putative integrase/recombinase protein [Acinetobacter sp. ADP1]
 gi|49531286|emb|CAG68998.1| putative integrase/recombinase protein [Acinetobacter sp. ADP1]
          Length = 340

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 84/326 (25%), Gaps = 24/326 (7%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   R        R  + R              A +  L          +  RK   +
Sbjct: 1   MQKPVKRGNAWRIQVRYKNLRDTATRDTARECEQWAAIRLLEMKAEYDPQKSIERKAYFS 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR- 126
              L  +Y           +             +  GD        I    +R+  + R 
Sbjct: 61  FHALFQKYYDEVGCKKRGKSYIQQQLK-IKTFKKYFGDLAEKSIYDIEAIDVRNWRDKRL 119

Query: 127 -KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            +    +  + +     +F +       +  NP   V +P +     R  ++ +++    
Sbjct: 120 QEVAAGTVHRQMCLYTSVFNYAKNELFMLKENPFAQVIKPAKPPARNRLISQSEIETILE 179

Query: 185 F-------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                     +  +  +A+   F + + +R  +       ++  +   +   K G    V
Sbjct: 180 ALNYKAGTTPKTPRQYVAWAFLFAIETAMRKGEIIGITCNNIYPDYIHLPMTKNGDSRNV 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293
            L      LL                    +  F + ++    K  ++     H  R  +
Sbjct: 240 PLSTEARALL-----DLLPHADRVKLIPHTSNSFRLCWQRAVGKTELHNLVHFHDTRHEA 294

Query: 294 ATISAD-AGATAHELMATYGWKTVDQ 318
            T   +        L    G + +  
Sbjct: 295 ITRLVNKRKLPVEILAKVTGHRDIRT 320


>gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 412

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 85/264 (32%), Gaps = 22/264 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAI 134
              A+ +   +ES    +           D    ++  + +R+        ++   ++ I
Sbjct: 130 KDYALITVRRYESCKRYLAELIRQKYEKDDLPLAEVNGELVRAFEFYLKTEKECQQNTVI 189

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFKSFWSEGSQ 191
           +++  ++ +   A+  E++A +P + ++    K       T +    +   +      + 
Sbjct: 190 RYMKCLKKITNLALANEWIAKDPFIGIKF-HEKEVIREFLTMDELLTIYHKEFPLERITV 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-----KLLA 246
            R  F F  ++GL   D  +   +H+  +       +     T  + +  +     ++L 
Sbjct: 249 VRDVFIFAAFTGLAFIDVQQLSPEHIVKDNNGNLWIRKPRQKTKNMCNIPLLDIPLEILR 308

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGAT 303
                  +             + + + K  A    + K  + H  R   AT      G +
Sbjct: 309 KYADYPASKKKGVLLPVPCNQKMNSYLKEIANLCQIKKNLTTHRARHSYATSVCLANGVS 368

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              +    G   +   + Y +  D
Sbjct: 369 IENVTKMLGHSNIKMTQHYARVLD 392


>gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
 gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117]
          Length = 360

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/313 (9%), Positives = 78/313 (24%), Gaps = 61/313 (19%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT--- 129
            ++Y       + +  +  ++        R     +     + T  + + ++  K +   
Sbjct: 29  ANDYLGYLSDRNYSPATTRAYGYDLLAFCRWLHEQNLTIEAVDTNTLINYLKFCKQSSVP 88

Query: 130 -------------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-- 168
                              P++  + + ++  LF +   ++    NP    +  +  +  
Sbjct: 89  GRPGPNVMTLDGQRADGYAPATVNRRMAAVSGLFTFLAMRDPCLPNPMPKGQESRWVSSA 148

Query: 169 --------------------EGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLR 205
                                  R   +           +G +    R     +LY GLR
Sbjct: 149 QRSGLLGHLATPAARSPLRVREPRRLPRSLESDEVIALFQGLRTYRDRAMAGLMLYCGLR 208

Query: 206 CSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262
             +     ++ +      +    K      V L      ++    + +            
Sbjct: 209 AGEVLALRIRDVDIGGRWLLVLGKGSRERRVPLDVDVAGVIQTYLLAERPESDEQRLFLV 268

Query: 263 --------KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW 313
                    + A      F+     +GV     H +R    +  A +G     +    G 
Sbjct: 269 AKGANRGLPLTAAGLRTIFRYHREISGVPDGHPHALRHTFGSALAASGVDLSIMRELLGH 328

Query: 314 KTVDQAETYTKGA 326
             V+    Y    
Sbjct: 329 AHVNTTARYIHLV 341


>gi|331647433|ref|ZP_08348525.1| putative phage integrase protein [Escherichia coli M605]
 gi|331043157|gb|EGI15295.1| putative phage integrase protein [Escherichia coli M605]
          Length = 358

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 103/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPKNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGI 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301]
 gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301]
          Length = 313

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309
                    +  M+ T     FK+    AGV K  S H +R   AT    AG     +  
Sbjct: 224 PWQNEFQLARWHMSDTTIQRAFKSALNLAGVRKHASVHTLRHSFATHLLSAGTDIRTIQL 283

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             G +++     YT      ++      R+
Sbjct: 284 LLGHRSLQTTMIYTHVIQATKMVTSPFDRL 313


>gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     +  +       +  ++        K    K+ +NK  S H 
Sbjct: 66  KYRGANRDFVWQWLFPSKVLSTDPRSGIERRHHLSEDSLQRAVKKALVKSEINKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 333

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 85/303 (28%), Gaps = 37/303 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSG 122
           L     E+       + + ++ +S+   +   ++                ++T   + + 
Sbjct: 10  LHAFFHEWLA--EQRNCSRHTVLSYRDAWKLYLQFVARRHHRPVSALKLDELTADEVLAF 67

Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWT 175
                  R+ +  +    L ++R  F++   +E ++   C +   +   K          
Sbjct: 68  LKHSESERRTSIGTRNCRLAAIRSFFRFVADREPLSAMQCAAVLSIPTKKGPKPEPDYLD 127

Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            +++            EG +       L  +G R  ++      +++    +      K 
Sbjct: 128 GDEVAAILRRPDRSTPEGQRDHALLALLYNTGARIQEALDVCPSNIRLTAPAQVKLYGKG 187

Query: 230 GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                  L      LL            E  F+N     ++A             A  + 
Sbjct: 188 RKARICPLWPETAALLKALLERQPRPYNEPLFVNRYGGPLSAAGARFKLAQYVRAAAYDS 247

Query: 284 -------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                     H  R  +      AG     +   +G  ++D    Y +   +  RL ++ 
Sbjct: 248 PSLRKKRVHPHTFRHTAGVQMIAAGVDVTVIRNWFGHVSLDTTNHYARANIETKRLALEQ 307

Query: 336 SRR 338
             R
Sbjct: 308 VDR 310


>gi|29374942|ref|NP_814095.1| phage integrase [Enterococcus faecalis V583]
 gi|29342400|gb|AAO80166.1| phage integrase [Enterococcus faecalis V583]
          Length = 404

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/393 (10%), Positives = 109/393 (27%), Gaps = 72/393 (18%)

Query: 10  FVTKERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI--- 61
           +V K++ + G I Y +R        G+  ++          A  +A      K + I   
Sbjct: 2   WVEKKKDKKGNITYQYRERYTDPRTGKTQKVTTTLAKNTKQAENAARRELEIKIQKILTD 61

Query: 62  -------------NSPRKKPTTLKWLISEYRKSAHWGSLAV----NSRISFESYFDQIIR 104
                                TL+ +I E+               ++   +    D ++ 
Sbjct: 62  YEEEKRLENLIKNEGVIPNDKTLEDMIKEWFDYIQDPKSKERKKGSTLSGYSYGIDSLLN 121

Query: 105 KS----GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           +      D   + +T   I++  +      ++  S   +F   +R  F  A ++ Y+   
Sbjct: 122 EFLVIEKDKRIQDLTFDDIQAFYDRMIFDFEYQKSYIKRFRAIIRGAFTLAYKKRYIKNL 181

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRC 206
             +++ +     + +     E + ++                        E   ++G+R 
Sbjct: 182 DAINLSKIVTPAKTVDDLINEQVPRYLEKAEAEQIFQVLNGYNPLYTQILELQFHTGMRF 241

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTI------------------ITVELPDGFMKLLAMT 248
            +      ++  +                                T+EL D  ++++   
Sbjct: 242 GELIALESKNFHDGFLLDIHGTYDHATRSHTRGQKVPPKTRKSFRTIELGDAAVQIIKDR 301

Query: 249 PIGKETFFINN--------DKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298
                     N        + +  +    + +  +   +       S H  R    ++ A
Sbjct: 302 MYHNHFIKNKNSDFLFVTSNDRPYDLGTINSFIASHQIEFNTSTKVSTHVFRHTHISMLA 361

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
           +       +M   G +  +  E  Y     + +
Sbjct: 362 EKSIPIQVIMDRVGHEDRETTEKIYMHVTKKQK 394


>gi|332182173|gb|AEE17861.1| integrase family protein [Treponema brennaborense DSM 12168]
          Length = 445

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 94/298 (31%), Gaps = 35/298 (11%)

Query: 77  EYRKSAHWG---SLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGV---ES 125
           +Y KS +         +    + +          I +       +IT K + +     E+
Sbjct: 122 DYDKSPYVREKLGKKQSIHRQYCATLLSRTRLYWIPRLAGKCVAEITRKDVDAFFSSDEA 181

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K  P +    + ++ +  KWA   E    N    + +    ++  +    E   +    
Sbjct: 182 QKLAPKTVNSIIETITIPLKWAYYNELTQNNCFDGIIKCSNISKKRKILDMETATKLMEL 241

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTGTIITV 235
             +  + ++A E  +++G+R  +     V  L           +    +K  K G   +V
Sbjct: 242 DWDNDEAKIANELAMHTGMRAGEIQALTVDDLGEDEIYVRRSWSKYDGLKCCKNGEERSV 301

Query: 236 ELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NK 284
            +P      L                F+     + M++ QF+ + K      G     + 
Sbjct: 302 PIPISHQLYLKLKMLAEFNPHDNGFIFYSTVPDKPMDSKQFNKYLKRALKDIGFENPEDI 361

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR---LGIKNSRRI 339
             H  R F  +   D       +MA  G KT      Y    +  +   L     +++
Sbjct: 362 CFHSWRHFFCSRMLDYVQDKRYIMALSGHKTEAMLNHYAAHLEDEKVVNLARSVMKKV 419


>gi|303233297|ref|ZP_07319968.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
 gi|302480597|gb|EFL43686.1| site-specific recombinase, phage integrase family [Atopobium
           vaginae PB189-T1-4]
          Length = 309

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 30/298 (10%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113
             ++   +   +    L+  + E+        +  ++   ++     +I+   G+    +
Sbjct: 1   MREKARTDVLVRDKMRLEDYVYEWYLPDVEKRVRFSTLKRYKVDIRLRILPALGNKYLDE 60

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172
           IT   I+  +     T   A     ++R +   A   +++  N      +   +      
Sbjct: 61  ITHSDIQ-CMLDACATYKVAKTSRETLRQVLNHANNAQFLCANVANETYKYPAEKVKELN 119

Query: 173 ---PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------- 220
                T   +        +    R      L  GLR  +        +  +         
Sbjct: 120 ADAWLTTFALHDAFIQKVDNRLFRTVCVVGLGFGLRMDEMFGLDWSDVDFDARLIHVKRA 179

Query: 221 -----------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                          K       +   + D    L         +   N   ++ N  + 
Sbjct: 180 YVKAEKGYKLDTPKTKMSVRAVPMRPFIYDELQALYNARYSLDNSVCSNVHGRRANPAKT 239

Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +  ++A   K G+ +  H   +R   AT   +AG    ++    G   +      Y +
Sbjct: 240 ASRWRAYTKKHGLQQ-LHIGNMRHSFATSCLNAGVDVTKVSKLLGHSNITTTVNHYLR 296


>gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1]
 gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1]
 gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1]
 gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1]
 gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1]
 gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1]
          Length = 308

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDHEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+     G 
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGGI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4]
 gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4]
 gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 28/306 (9%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV 123
           T+K L   Y        L+ ++   +      ++          D+D   I    +    
Sbjct: 78  TIKTLFE-YHMIMEGKKLSQSTCYQYGVTLKYLLSYVRIKHKVADYDISIIDAAFVNEFF 136

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQ 180
              +            +    K   R + V      +      P +  +  +  T  +  
Sbjct: 137 AYLQGYLRQDNMKRCDINGALKHMERFKKVMEMAFNNEWINRNPVKALKAHKEKTDINEL 196

Query: 181 QFKSFWSEGSQ--------PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227
             ++     +          R  F F +Y+G+   D  R   +++            K  
Sbjct: 197 DEEAVKRLSTVILPPNLGIVRDLFIFAVYTGVSYEDMTRLTQKNIVIGIDKSLWLHYKRV 256

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVN--K 284
           KTG  +++ L +  ++++       +    N       + Q  + + K  A  AGV    
Sbjct: 257 KTGVRVSLPLLEPALEIINRYDTYHKGGKKNQPLFPYVSNQIMNRYLKKVAKLAGVEDRV 316

Query: 285 SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSV 342
           + H  R   AT            +    G   +   + Y +  D   +      + + S 
Sbjct: 317 TYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVMRDMATLKDMYSH 376

Query: 343 VDSDDP 348
            +   P
Sbjct: 377 KEDKSP 382


>gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     I  +       +  ++        K    K+ +NK  S H 
Sbjct: 66  KYRGANRDFVWQWLFPSKVISTDPRSGIERRHHLSENSLQRAVKKALVKSEINKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 391

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 106/356 (29%), Gaps = 40/356 (11%)

Query: 10  FVTKERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +T+ RT  G  +    +RK  G +              + +              P   
Sbjct: 3   NITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGG 62

Query: 68  PTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              +  L  ++       W + + ++  S          K  +     IT   +++ V S
Sbjct: 63  KQRIGTLHDQWIAEKKPFWKATSGSNMDSAWKC--HCEAKWAERQIGSITHAEVQAWVGS 120

Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
                   S  +    M+ +   AVR + ++ NPC  +E P+      R           
Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IF 222
              +  +    G + R     L + GLR  ++     + L  +                +
Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
           +  T K      V +P   M  L      +E         +       +  + + W+   
Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300

Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            T+ G  +      H +R  +A+++  AGA    L    G K      + Y    D
Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 356


>gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3]
          Length = 391

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 108/377 (28%), Gaps = 53/377 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPT 69
           V   +   GK     RK       L          A +     +          R     
Sbjct: 16  VLSYKDAAGK-----RKTKWEATGLSVKRNKKKAEALLLERRRNFMVSTAPAEIRLDDDI 70

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR--KITTKHIRSGVESR 126
                + ++ +     ++ + +  S++   ++ I+      + +   +    ++     +
Sbjct: 71  LFSDFMLKWLE-VTKSTIQITTYASYQGMVERVIVPYFRKRNIKLVDLKATDLQDFYTKQ 129

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +   +S I +  ++    K+AV+ + +  NP   VERPK+       ++ +++    +
Sbjct: 130 LERVKANSVIHYHANIHKALKYAVKIDLIPTNPADKVERPKKNEFKGSYYSADEIHA-LT 188

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             +EG++  +      + GLR S+        +     +++ +   T             
Sbjct: 189 EIAEGTKLEIPVLLASFYGLRRSEVLGLKWDAIDFEANTLEIKHIVTQASIDGKKVLVQA 248

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMN----------------AT 267
                     T+ L       L M    ++T+     K                      
Sbjct: 249 DRAKTKSSLRTLPLVPPIRDRLLMLKGQQDTYRRLCGKSYNREYLGYLCVDEIGNIIRPN 308

Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
             S  F     K G+     H +R   A++    G    ++    G          Y   
Sbjct: 309 YVSEQFPKLLEKNGLRPIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHL 368

Query: 326 ADRIRLGIKNSRRISSV 342
               +L       +  +
Sbjct: 369 DYASKLS-SAQAMLEGL 384


>gi|303246559|ref|ZP_07332838.1| integrase family protein [Desulfovibrio fructosovorans JJ]
 gi|302492269|gb|EFL52144.1| integrase family protein [Desulfovibrio fructosovorans JJ]
          Length = 329

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 87/322 (27%), Gaps = 25/322 (7%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R        R+     +             +   +     +  +++    + TTL   
Sbjct: 5   RPRGDSWEVRIRRKGWP-VTCRTFDTKFDAEKWAREIESEMDRGVFVSRAEAEATTLAEA 63

Query: 75  ISEY-------RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  Y               L +            + +      D             E+ 
Sbjct: 64  LDRYETDYLPRLAHPDREILRIKGLK--RRVLAARFLAAIRTKDVADF-----IKEREAE 116

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             +P++    L  +  LF+ A     +    NP   V RPK  +   R     + ++   
Sbjct: 117 GVSPNTIRLDLALLSRLFEVAASDWGMESLANPVRRVSRPKLPSGRTRRLEAGEEEKLLD 176

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 +  +  +  L + +R  +        +    F+ KT         +     +  
Sbjct: 177 ACPSPFKELI--QLALETAMRREELQTLEWSQV---DFNGKTAHLPKTKNGDARTVPLSP 231

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAG-A 302
           +A+  +       ++          +        KAG VN   H +R  + +   +    
Sbjct: 232 IALDILQSIQRGESDRIFPFTLDFITKKMGKVVKKAGMVNFHFHDLRHEATSRLFENTDL 291

Query: 303 TAHELMATYGWKTVDQAETYTK 324
              E+    G K++     Y+ 
Sbjct: 292 DVMEIKGITGHKSMQMLARYSH 313


>gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata]
 gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata]
          Length = 366

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 105/353 (29%), Gaps = 39/353 (11%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +T  G     +R   GR+ R            ++S +     +  Y++ P       +  
Sbjct: 6   KTPAGTWRANWRDPSGRQ-RAKTFRTKKDANVFLSGVETEKARGTYLD-PSAGKVLFRDH 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
              +++S     + + +  +  S     ++ + G++   KI    +++ V     K +P 
Sbjct: 64  ARRWQES---RQVELTTAAAGVSRLRCHLLPQWGEWPLNKIGFLDVQAWVTRLAAKLSPQ 120

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +       +  + K AVR   + +NPC  V   P+RK               K       
Sbjct: 121 TVASCHGILFSIMKAAVRARLIPVNPCEGVRLPPRRKRATAETVITRAELTGKLLPELPE 180

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTII 233
           + R       Y+GLR  +        +                          +      
Sbjct: 181 RYRALVLLAAYTGLRWGECVGLRWTRVDLTAAELTVVETAVEVSGKISVKPYPKTEAGRR 240

Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFS-IWFKAKATKAGVN--KS 285
           TV +P   +  L               F +     +  + F    +     KAG+    +
Sbjct: 241 TVPIPPLLVAYLRRHREIVPPAPDDLVFPDTVGHPLRRSNFRRYVWVPARGKAGLPTSLT 300

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA----DRIRLGI 333
            H +R   AT     G   + +    G +        YT       DR+R  +
Sbjct: 301 FHALRHCYATWLISEGVPVNVVQVALGHEHASTTLNRYTHRPKDYHDRLRAAL 353


>gi|254459215|ref|ZP_05072637.1| phage integrase [Campylobacterales bacterium GD 1]
 gi|207084108|gb|EDZ61398.1| phage integrase [Campylobacterales bacterium GD 1]
          Length = 347

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 93/346 (26%), Gaps = 39/346 (11%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYM-----SALTGSTPKREYINSPRKKPTTLKWLI 75
            I ++ +    R  L                    +      +   N+  KK  T+   +
Sbjct: 2   WITFYHQSKRYRRSLKLDDTKANRKLAESKLIPEIVHKLNQDKFLENTNVKKVPTVDEFM 61

Query: 76  S-EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
              +     +      S+  ++  +   I    G     +I    I +         S+ 
Sbjct: 62  QISFEIHEAYRR--PLSQKDYKFIYERHIKPIFGKRIIDEIKPSEIATWQSKLLKKLSTK 119

Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                L    V+F  A+  E +A NP   +++PK  +        +  + FK       +
Sbjct: 120 SLTMILAVFNVMFNDALADELIARNPMSLIKKPKNISVN-EILPFKQDEIFKLLGHIQER 178

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------------- 232
            R  F    ++G+R  +        +      IK ++                       
Sbjct: 179 MRAVFAIGFFTGMRTGELVALKWSDIDFENNIIKVRRAKRQNVESLPKTKSSIRDIDIID 238

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290
            +   L +     L  +     +          + +    +++    K  +     + +R
Sbjct: 239 ILLPYLQNHLKFKLDDSEYMFNSLHKRPFTCFHSIS--RTYWRPIFEKIDIAYRNPYQMR 296

Query: 291 KFSATISADAGATAHELMATYGWKT----VDQAETYTKGADRIRLG 332
              A++    G     +    G       +     Y +  D+ R  
Sbjct: 297 HTFASMMISNGEDILWVSKMLGHTNSAITLTMYARYIENKDKKRGA 342


>gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457]
 gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457]
          Length = 343

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 86/323 (26%), Gaps = 32/323 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            Y +   G+R+R           AY + +      + ++ S       L  ++  +    
Sbjct: 18  CYPQGREGKRVRKR-FATKGEATAYENFIMREVDDKPWMGSKPDNRR-LSDIVELWYSHY 75

Query: 83  HWGSLAVNSRISFESYF-----DQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP 130
               +  +  I    +      + I        Y    ++        +       K + 
Sbjct: 76  GRTLVNGDVIIQKFHHMVNAMGNPIAATFSAKTYSDFRSRRMSGELIFVDGRWNRGKPSI 135

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187
           S+    L   + +F              L   +P R++E    +   +  +         
Sbjct: 136 STMNSELARFKAVFNKLKELGEWNAPNPLDDVKPFRESEREMSFLTTEQIKLLLELVAQH 195

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           E +      +  L +G R +++ +     L     +    KT    TV +       +  
Sbjct: 196 EIADMLKIVKICLSTGARWNEAAKLRGSQLSEYKITYTNTKTKKNRTVPISRELYDEIYK 255

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303
              G+           +              K G+      ++H +R   A+     G  
Sbjct: 256 PTSGRLFEECYTPFCYI-----------LKNKLGITLPSGQASHVLRHTFASHFMMNGGN 304

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y+  A
Sbjct: 305 ILVLRDVLGHADISMTMRYSHFA 327


>gi|63146885|emb|CAI79468.1| integrase [Lactobacillus delbrueckii subsp. lactis]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 86/289 (29%), Gaps = 26/289 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121
           R+K   L    +++ +    G++   +   +     +  +I       D  ++  + I +
Sbjct: 2   RRKQILLHDYFAQWIEVYKDGAVRERTLDKYWLSHRHLQEIAPNLKLVDTTRLEYQQILN 61

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKE 177
                    ++ + F   ++ +   A  + Y+  +P   +    + P  K        + 
Sbjct: 62  TFAQTHEK-ATVMDFHHQLKAMLLDAYDEGYIQRDPTRKIVVKGKEPSEKKAKYLNEFEL 120

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------- 230
            +       S           +  +GLR S++     + +      I   KT        
Sbjct: 121 KLLLRHLDLSAFPNFDWMILLIAKTGLRFSEALGLTKEDIDLEQQMINVDKTWDYKSYTG 180

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                    ++  V +       L               ++++  +  +   K    +  
Sbjct: 181 SFKPTKNSSSVRKVPIDWKLAMQLNQVIQDLPNGEPIFAQKRVFNSTVNNLLKKHCKELN 240

Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
           +   S HG+R   A++   AG +   +    G   +    +TY      
Sbjct: 241 IPVISVHGLRHTHASLLLFAGVSIASVANRLGHADMTTTQQTYLHIIQE 289


>gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3]
 gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3]
          Length = 379

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 17/261 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  + + + +    +           D    ++T   IR      ++    A   + 
Sbjct: 102 KDRSKRTYLKYLTVRKYVAEFIRKQYKRADITMNELTEDFIRDYCLYLRNEAGLAQSSVW 161

Query: 139 S----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
                ++ +   A     +  NP   +       +     T+E++Q   +   E      
Sbjct: 162 IYSIPLKHIVTTAHYNGKIPRNPFA-MYHVDPDHKERGFLTEEELQALGAIKLENPNFAL 220

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPI 250
            R  F F  ++G+   D       ++     ++          V      M + + +   
Sbjct: 221 ARDLFLFGCWTGISFIDIKNLTTDNVVEINGALWIVSKRQKTGVPFQVKLMDIPMQIIKR 280

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +            +    +   K+ A K G+ K  S H  R   A ++ + G     + 
Sbjct: 281 YEPFRKDKRLFNIGSLDMVNKRIKSIARKCGIEKPVSFHLSRHSFAVMALNYGMPIESVS 340

Query: 309 ATYGWKTVDQAETYTKGADRI 329
              G   +   + Y K  +  
Sbjct: 341 KILGHTDIKTTQIYAKVTNTK 361


>gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 320

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 97/324 (29%), Gaps = 37/324 (11%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A   A  G       +     +   L+    EY       + +  +  ++     +  R 
Sbjct: 2   AEREAKDGRVEVGLKLTLNELQRR-LRDFQQEYL-----KNKSPETVGTYRRALHEFERW 55

Query: 106 SG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                    F    +         E + H   S   +LT++R   ++ V    +  NP  
Sbjct: 56  FATQRGQFRFRVADVQRYKQYLMREKKLHQ-VSVSTYLTALRRFCQYLVDIGLLPENPAR 114

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           +V+  +R +   R        +             G + R     +L++GL   +  RA 
Sbjct: 115 TVKGNRRPSSHSRSVLTRVEIEQLLAVLDQDTSQIGLRDRAIVHMMLFAGLSEVEIVRAD 174

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------------LAMTPIGKETFFIN 258
           V+ L   +     +  G   T +     +                 L        +    
Sbjct: 175 VRDLDQTLLGWYLRVQGKGHTAKDQQVPLDPPVVEALQAYLNTRVPLHPGEPLFVSHGHR 234

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKT 315
           ++ Q++N        K     AG+ +   + H +   +A I  + G +  E+       T
Sbjct: 235 SEGQRLNTRSVRSRIKQHLEAAGITRRGVTPHSLTHTAALIWLNQGMSIEEVQRRMRHGT 294

Query: 316 VDQAETYTKGADRIRLGIKNSRRI 339
           ++    Y +    +    +  +R+
Sbjct: 295 LETTMIYYRKQGLLNRDPEELKRL 318


>gi|85058907|ref|YP_454609.1| phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779427|dbj|BAE74204.1| phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 355

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 103/342 (30%), Gaps = 28/342 (8%)

Query: 3   PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREY 60
            +  LPP +      +G    Y     G+   L          A  +  A+ GS+ +   
Sbjct: 8   KNRDLPPNLQPI---NGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAIYGSSKQSPL 64

Query: 61  INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++     + TT+    + Y        L   +      Y   I    G+F  +++ TK +
Sbjct: 65  VDRISGTQATTVSEWTTRYLTILEGRKLKPKTMTEHRKYLKAINEHLGEFAIQQVQTKDV 124

Query: 120 RSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            + +         + A +    +  LF+ A+    V+ NP  +    + + +  R   +E
Sbjct: 125 AAFLNLWVKAGKETMANKLRKEVIDLFREAIADGIVSHNPAEATRNQRVEIQRERITLEE 184

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ-------HLQNNIFSIKTQKTG 230
                K      +      +  L +G R  D      +       +++     +    + 
Sbjct: 185 WKVIRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFKDGRLYIKQAKTGMMLAFSA 244

Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                 L      +L+              ++  ++  A   S  F      +G+     
Sbjct: 245 VTRIDCLNLCLADVLSQFKALNSTGSHIVADSKHEQFAAKTISAAFLKARRVSGLTWQGD 304

Query: 285 --SAHGVRKFSATISA--DAGATAHELMATYGWKTVDQAETY 322
             S H +R   A      + G          G K+ +  + Y
Sbjct: 305 PPSFHEIR-SLAARLYTDEKGRD--YAQKLLGHKSSEMTDKY 343


>gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY]
 gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY]
          Length = 332

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     A +AG++K  + H +R   AT    AG     +    G K V     YT 
Sbjct: 257 QSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTH 316

Query: 325 GADR 328
             ++
Sbjct: 317 VLNK 320


>gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
 gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697]
          Length = 386

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 19/269 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130
            I  +    H  ++  ++R ++    D +   +    +  I    +        S K   
Sbjct: 84  FIDFFSDICHDINIKDSTRKNYFRTLDTLKEYAPAARFCNIDKAFVCGYELFLLSLKMRA 143

Query: 131 SSAIQFLTSMRVLFKWAVRQEYV----------AINPCLSVERPKRKTEGIRPWTKEDMQ 180
           ++ I+ +  ++  F  A R+ Y+                   +    ++ +    +    
Sbjct: 144 NTIIKHMKHLKKAFHQACRKGYLKLSIEELFSLCSVKQEKTFKESLTSKELLILYQYLQT 203

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +F++      +    F F   +GLR SD C     +++          T      ++   
Sbjct: 204 EFETMADREKEILAGFLFSCLTGLRYSDICSVEYSNIKRIRNKRWLFLTMKKTGQKVFVP 263

Query: 241 FMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSA 294
             ++ +      +              +    +   K    K      N S H  R  +A
Sbjct: 264 IEQMFSGRALGIMRLFHRTRGKLFHMPSNAVCNRIIKRIYKKLFRGKKNISFHTGRHTAA 323

Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323
           T+          +    G   +   ETY 
Sbjct: 324 TLLLYHNTPLTTIKEILGHTNIRTTETYA 352


>gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               G+  +     I  +       +  + +       K    KA +    S H +R   
Sbjct: 71  CREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADIIKPASTHTLRHSF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + G     +    G K V     YT   
Sbjct: 131 ATHFLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|119716520|ref|YP_923485.1| phage integrase family protein [Nocardioides sp. JS614]
 gi|119537181|gb|ABL81798.1| phage integrase family protein [Nocardioides sp. JS614]
          Length = 395

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 98/348 (28%), Gaps = 48/348 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + +  +R   GR+ R           A+ + +      R           + +    E+ 
Sbjct: 16  RYVVNYRDPEGRQRR-KTFRRKAEAVAFRNTVEA-DKLRGTYLDVDAGKISFRAYAEEWL 73

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
            S  +   +  +  + E      +    G  + R+I    I+  + S +   +      +
Sbjct: 74  DSRTF---SPLTYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEMAETYRRVIFS 130

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  +F  AV  + +A NPC +    +  T   +              +   Q R+A   
Sbjct: 131 NVSAIFSAAVDDDMIAKNPCKASSVTRPATSRRKVVPWPTEWVSSMHDALPPQYRIAVTL 190

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVELPDGFM 242
               GLR  +     V+ +      ++ ++                     TV LP+   
Sbjct: 191 GSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKTRTVPLPESVA 250

Query: 243 KLLAMTPIGKETFFINNDKQKM--------------------NATQFSIWFKAKATK-AG 281
             L+          I                           N   F+           G
Sbjct: 251 TELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTRLWKPGQAHVG 310

Query: 282 VNK----SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324
           + +      H +R + A++  DAG +   +    G         TYT 
Sbjct: 311 IEQARDNGMHALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTH 358


>gi|166031050|ref|ZP_02233879.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
 gi|166029317|gb|EDR48074.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC
           27755]
          Length = 329

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 15/279 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHTP 130
           + +Y  S      +V++   +     +++    +     IT   I    R+    R    
Sbjct: 54  LEDYLMSKALEGKSVDTVNRYRYELTRLLSYI-NKAVADITDGDISSYLRAYKNIRAVKN 112

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S+           F W   ++ V  NP + VE  K +    RP+T  + +Q         
Sbjct: 113 STLKGVRAVYSSFFVWLRDRDRVRRNPMVLVESIKVEKRIKRPFTDAEREQLL-RSCATI 171

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP 249
           + +   EFL  + +R S+        ++ +    I   K G   TV L +     L    
Sbjct: 172 RDKAMMEFLYSTAVRVSELASLNRDDIRWSSKDLIVYGKGGKERTVYLNERTNMYLQEYL 231

Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +            +   +++        +    +AGV K   H  R  S T + + G 
Sbjct: 232 QSRTDNNPALFVGLKSPHNRLSKAGIEDMIRRTGERAGVEKAHPHRFRGTSITNAINRGM 291

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              E     G    +    Y    D+  +   + + +S+
Sbjct: 292 PLQEASIMAGHAKTETTMLYC-SVDQESVKYHHKKYLSA 329


>gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
 gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp.
           HGF2]
          Length = 284

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 89/277 (32%), Gaps = 10/277 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  +         + N+   +    D +     + +  K      +  +      PS+  
Sbjct: 10  IDGFIIKEREAEKSKNTVRHYAHVLDLLYDFLPEGELNKTGIIEFKEHLLESGFEPSTVQ 69

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            ++T +    K+   +        + V+      E      ++ M+  +     G +   
Sbjct: 70  NYITIVNKWLKY--AKMKRFTVTNIKVQGKASLEEEELLTPEDFMRLLRQAKRMGRKQYC 127

Query: 195 AFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
               ++ Y+G+R S+     V++++     +  +     I +           +   G E
Sbjct: 128 MIMEIMGYTGIRLSELQYFTVENIRKPKLIVHNKGKIRTIIMPTSLKKKIKKYIEEQGIE 187

Query: 254 TFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
           + +I   K+    ++ T      +  A  A + K+    H  R   A    + G    +L
Sbjct: 188 SGYIFPGKKEGAMLHPTTVYKNIRKIAATAKIKKTKAHPHAFRHLFAVRYIEEGGQPSDL 247

Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVV 343
               G   ++    YT+  D+  ++ ++     +   
Sbjct: 248 ADILGHSQLETTAIYTRTTDKMKKIQVERINYRNRRK 284


>gi|227833852|ref|YP_002835559.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454868|gb|ACP33621.1| putative phage-related integrase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 422

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/390 (11%), Positives = 108/390 (27%), Gaps = 67/390 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M P   L    +  +T+ G+       G  G+  ++     +      +         + 
Sbjct: 1   MRPVRDLTMG-SIYQTKDGRYRAAITVGYDGKGRQVRRTVSAKTQAECVR-RRNELFIKL 58

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
                  +  T++  ++ + ++    + + N+  + +SY    II   G++    +    
Sbjct: 59  KKGRSTPEEITVETHVTRWLETTAAETFSPNNLRNHKSYATKYIIPTLGEYKLSDVGADE 118

Query: 119 IRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R   ++ +    +  +     +S+ V  + AV++  +  NPC  V RP+  ++     T
Sbjct: 119 VRELDKAVRDAHVSSRTVQMVRSSLSVCMEDAVKRGLIERNPCSQVPRPRAVSKKRTSLT 178

Query: 176 KEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------- 220
            ++ +         G      +   L+ G R  +        +  +              
Sbjct: 179 ADEARHLIVHSAQVGDPFATLWAAFLFLGPRKGELLGLQRNKVNFSPAGCTAELDRALVE 238

Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------- 270
                 +  +    +           L      +  +          ++           
Sbjct: 239 VSWAHGEGCRCIDGVRPSKCPTRGLALPPGYDFEPLWGNLILAPPKTSSSVRLVHVPAPL 298

Query: 271 ----------------------------------IWFKAKATKAGVNK-SAHGVRKFSAT 295
                                               +K+    AG+     H  R  +A+
Sbjct: 299 DAMLWQYVQAAPPNKWGLMWVSERGLPLRPKVALARWKSALKAAGLPVVDLHTARHTAAS 358

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
           + A+ G     +    G  TVD    Y   
Sbjct: 359 LLAECGVPPQVIGVILGQSTVDTTLGYVHV 388


>gi|167628712|ref|YP_001679211.1| phage integrase [Heliobacterium modesticaldum Ice1]
 gi|167591452|gb|ABZ83200.1| phage integrase [Heliobacterium modesticaldum Ice1]
          Length = 421

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 85/301 (28%), Gaps = 26/301 (8%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
            + + ++G           RK P   + + +EY +     S    +         +++++
Sbjct: 88  RFDAFMSGRDLALRSPRVVRKCPIQFEGVFAEYLEDLRLRSYRERTVEDHRLNILKVLKE 147

Query: 106 S---GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
               G  +   I   +I +              F +++R   ++  +   +  +  + V 
Sbjct: 148 FDASGVKNIAHIVPANIYNIFNGIHRK----NSFYSTLRQFLRFLFKNRVLHDDYSVLVP 203

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
             +  +     +TK ++ Q           G +        L  GLR  D     +  + 
Sbjct: 204 SVRYSSPVPSIYTKSEITQLLKAIDTSTKTGKRNYAIVMLALRLGLRTGDIVNLKISDVN 263

Query: 219 NNI---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQ 268
                   I+ +       V LP+    LL+     +      N         + +  + 
Sbjct: 264 FTNKEICFIQEKTQLPQRLVLLPEIEKSLLSYLSTARPDCDSPNIFLSLLAPYRPLTPSL 323

Query: 269 FSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                      AG+        AH +R   A+           +    G       + Y 
Sbjct: 324 IWAHIHTHIESAGIIIGERKSGAHSLRMTLASELVAEKVPYDVVRKILGHDDPVSIKHYV 383

Query: 324 K 324
           K
Sbjct: 384 K 384



 Score = 38.6 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESR 126
           L   +  +         + N+  ++    +Q  R   +  YR    +I  + + +  ESR
Sbjct: 13  LNEELESFLNHLLGLGYSENTVQNYRWIVNQFERFLLENHYRNYSNEIADQFLSTVSESR 72

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           ++T ++       +     +   ++    +P +  + P +  
Sbjct: 73  RYTENTVRTLKGMLYRFDAFMSGRDLALRSPRVVRKCPIQFE 114


>gi|310828360|ref|YP_003960717.1| phage integrase [Eubacterium limosum KIST612]
 gi|308740094|gb|ADO37754.1| phage integrase [Eubacterium limosum KIST612]
          Length = 407

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 98/388 (25%), Gaps = 71/388 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    ++P + T     +G   Y  R     G+R+ L              A      K 
Sbjct: 1   MARRRQIPKYGT--VVHNGVTYYRTRIRDAGGKRVALYGKTREELYDKVEEANRQIEDKI 58

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
               +P     T+K    ++        +   + + + S     I++  G      +T  
Sbjct: 59  FRQKTP-----TVKEYAEKWL-YMQSAHVRYTTMLDYTSKVKNYIVQPLGHMYMADVTQD 112

Query: 118 HIRSGVESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            I+  +        S     +  ++ +F  A     +  NP   +       E  +P   
Sbjct: 113 DIKMALVPVSKKSESVYHSVVMLLKCIFYSAEDNHLIRENPTKRIPSRGGVPEKEKPPLT 172

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++  +      +G  P +     LY+GLR  +        +  +             T  
Sbjct: 173 DEQVEMLLDAIKGLPPYVFVMLGLYAGLRREEILGLKWDCVFLDEEVPYLSVKRAWHTER 232

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK---------------------MNATQFSIWFKA 275
                 + L      ++    +   +                      ++ TQF   ++ 
Sbjct: 233 NRPVITEQLKTKAAKRDIPLPDCLTECLREAKEQSKSEFVVCNRGGEALSYTQFRRVWQY 292

Query: 276 KATKA-------------GVNKS------------------------AHGVRKFSATISA 298
             T++              +  +                         H +R    T   
Sbjct: 293 IVTRSTKERTYVRYVNGEKIKHTVTPVLGEKAKHNNTVVYTLDFQVTPHELRHTYITNLI 352

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG 325
            A      +    G ++       Y K 
Sbjct: 353 AASVDPKTVQYLAGHESSKITMDIYAKV 380


>gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 412

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 78/275 (28%), Gaps = 26/275 (9%)

Query: 97  SYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
               + +   G  D     IT           + R    S+    L  +  L   AV + 
Sbjct: 136 RNLREFVENKGVQDIPIGTITEDLFEEYRFFLKKRGLRASTINSNLCWLSRLMFRAVSKR 195

Query: 152 YVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
            +  NP  + +  K + +    +      +   +    E    R  F F  ++GL  SD 
Sbjct: 196 IIRCNPFENAKYEKEEKKIRFLQKGDVMKLMPMRMNDKEAELARQMFIFSCFTGLAISDM 255

Query: 210 CRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF---------- 255
                +H+Q      ++  K ++   +  +       + +      +             
Sbjct: 256 ENLEYKHIQTTAEGQMYIRKERQKTKVEFIVPLHPIAEAIISHCQKEPERSEVQQTVKEK 315

Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYG 312
                  +  + +             G+ +    H  R    T+S  AG     +    G
Sbjct: 316 GDHLVFHRDCSRSVMDTKLSIVGKACGIRQRLSYHMARHTFGTMSLSAGIPIESIAKMMG 375

Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
             ++   + Y +  D      ++  R+ +     +
Sbjct: 376 HASISSTQVYAQVTDNK--ISEDIDRLIAKQSVRE 408


>gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319]
 gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319]
          Length = 391

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 18/279 (6%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSG--DFDYRKITTKHI---R 120
           PTTL  L  E          +   +   S+    +  +   G  D     +T +     R
Sbjct: 101 PTTLLALSQEELSIVQSTKASGTYQSCRSYHRQLESFVESKGVADIPLTTLTMEFFDDYR 160

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
              + + +  SS  Q L  +  L   AV Q+ +  NP    +  + +   IR  +K D+ 
Sbjct: 161 IHFKRKGYALSSTKQNLFWLSRLMYRAVSQQTIRYNPFEDAKYERVER-KIRCLSKTDIA 219

Query: 181 QFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +  +   +  Q    R  F F +++GL  +D  +     ++ N   I+  +     T   
Sbjct: 220 RLLAMPLQNEQAEFVRKLFLFSVFTGLAFADVSKLRYCDIETNNAGIRYIRQYRKKTDVE 279

Query: 238 PDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
               +     ++L++ P+             M+  Q  +  K       +    S H  R
Sbjct: 280 SITPLPPIAEQILSLYPLKDRKEDSPIFATSMSRIQIGMHLKTIGLACAIRQSLSFHVGR 339

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
                ++ +AG     +    G  ++   + Y +  D  
Sbjct: 340 HSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNK 378


>gi|323340058|ref|ZP_08080324.1| integrase XerC family protein [Lactobacillus ruminis ATCC 25644]
 gi|323092564|gb|EFZ35170.1| integrase XerC family protein [Lactobacillus ruminis ATCC 25644]
          Length = 396

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 107/383 (27%), Gaps = 61/383 (15%)

Query: 13  KERTRHGK--IIY----YFR---KGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYIN 62
           +E   +GK    Y     ++    G  R++ +         + A    L     K     
Sbjct: 6   REVLVNGKLEKRYCFVERYKSTLTGKYRKVSVTYGKKTPQVVKAATQELERKINKALAEE 65

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
           S   +  TL  + + + +      +  ++  +   +  + +   G D     I+ + +  
Sbjct: 66  SEFVQTATLSQVSTAFLEQYQ-KRVQPSTYKNGALFIKKFVDDFGHDTIISNISQRSLNR 124

Query: 122 GVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--- 172
                 +      T  +       + VLF +AV   Y+  N    V+   +     +   
Sbjct: 125 YFNDMLYNNERDLTNGTVRAIKNKVSVLFDFAVTYGYLKDNNIKKVKIEWKNENARKRNQ 184

Query: 173 ----PWTKEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 T+++ ++             A  F     +G+R  ++    VQ +         
Sbjct: 185 IENKYLTQDEYRKIIDDCLINGADHYADVFKLQYLTGMRFGEASGLRVQDVIKENGKTYL 244

Query: 227 QKTGTIIT-------------------------------VELPDGFMKLLAMTPIGKETF 255
               +++                                VE       L A+      + 
Sbjct: 245 DINHSLVFLSSPSRYYLSDSTKTFAGMRKIILSPEATKIVERHMRNKDLDALLFAYNPSA 304

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313
               D++ +N    +   K    +  ++K  + H  R    ++ AD       +    G 
Sbjct: 305 PHFADQKPLNINNANTMLKRIIERQKIDKDVTTHYFRHTHVSVLADMDVPLRVIKDRIGH 364

Query: 314 KTVDQAE-TYTKGADRIRLGIKN 335
              +  E  Y     + R   + 
Sbjct: 365 ADTNITEKIYMHVTKKARQDFEA 387


>gi|238026834|ref|YP_002911065.1| Prophage integrase [Burkholderia glumae BGR1]
 gi|237876028|gb|ACR28361.1| Prophage integrase [Burkholderia glumae BGR1]
          Length = 355

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 94/346 (27%), Gaps = 31/346 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++  + G          G RIR      +      Y   L   +          +   T 
Sbjct: 4   RKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRL--KSDLWRQDKLGERADRTF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
           +     + +                 +      + G    R +T + I   + + K    
Sbjct: 62  EEAAVRFLQMCAGQ----RDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNG 117

Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                  P +  +++ ++R +    +  E++   P L       + +    W    +   
Sbjct: 118 APTKLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRR---FEEPDIRVRWETPAVITR 174

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238
                     R A    + +G+R S+     +  L     N   +    K+    +V L 
Sbjct: 175 MIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLN 234

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIW----FKAKATKAG-VNKSAHGVRK 291
           +  M +L                 + N             F      AG V+ + H +R 
Sbjct: 235 EDAMSVLERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRH 294

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
             A+     G     L    GW+TV   + Y   A    L    + 
Sbjct: 295 TWASWHVQHGTPLMVLKELGGWETVAMVQKYAHLAP-SHLAQHAAN 339


>gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
 gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM
           17393]
          Length = 333

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T ++++Q 
Sbjct: 116 HSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVKKEYLTLDEVKQL 175

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 176 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 233

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +         T       + +  +  +   K+   KAG+    + HG R   A I    
Sbjct: 234 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISL 293

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 294 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 331


>gi|160935333|ref|ZP_02082715.1| hypothetical protein CLOBOL_00228 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441691|gb|EDP19391.1| hypothetical protein CLOBOL_00228 [Clostridium bolteae ATCC
           BAA-613]
          Length = 281

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 78/264 (29%), Gaps = 13/264 (4%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L   Y         +  +   +       +    D    +I+ + +    ++   K+  +
Sbjct: 13  LFRNYLLEEE---RSAATIEKYGRDVLAFLSWLSDR--EEISKEVVVGYKQAIIGKYKTT 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           SA   L S+     +  +++            P RK +      + +     +     S+
Sbjct: 68  SANSMLVSVNRFLDFIGKKDCQVKL-FKIQRNPFRKKDKELTKEEYNRLILAAKAKSSSR 126

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTP 249
             L  + +  +G+R S+      + L+    +I  +    ++ +         +      
Sbjct: 127 LFLMIQAICSTGIRVSEHRFITREALERGRITIYNKGKERVVFLPKKLKKCLLQYCRQNG 186

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
           I     F+  +   +N        KA   +AGV       H +R   A            
Sbjct: 187 IYSGPVFVTKNGTPVNRCNVWAEMKALCKEAGVSPEKVFPHNLRHLFAVTYYRMQKDIVH 246

Query: 307 LMATYGWKTVDQAETYTKGADRIR 330
           L    G   ++    YT  ++   
Sbjct: 247 LADILGHSNIEYTRIYTFTSEEEH 270


>gi|188492442|ref|ZP_02999712.1| prophage integrase [Escherichia coli 53638]
 gi|188487641|gb|EDU62744.1| prophage integrase [Escherichia coli 53638]
          Length = 413

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 36/345 (10%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPY--------PHESTFIPAYMSALTGST-----PKR 58
               G  I+   Y+R    +R  +                   Y S +   T      +R
Sbjct: 35  VKPSGSKIWRFTYYRPTDKKRTIISLGSLNDVSLSDARERRNEYRSLIAKGTDPQDHERR 94

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           +     RKK  T + + S++ +     +LA N+           +    G+     +T +
Sbjct: 95  KREAESRKKGNTFEKVASDWYEMKKGQNLAYNTIKDIWRSLEKYVFPYIGNTPIDTLTAR 154

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                +   K   +  +  + L  +  +  +A     + IN   +V +           T
Sbjct: 155 RFVEILTPIKARGNLETLKRVLQRINEVMDFAANSGLIDINTAANVRKAFPSPTKKHMPT 214

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----T 226
                        S  S   Q RL  E+ L +  R +++  A  + +  +  +       
Sbjct: 215 IRPEQLPQLMHDLSVASIERQTRLLIEWQLLTVARPTEAAAARWEEIDLDAETWTIPAGR 274

Query: 227 QKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            K      + L    M +L                + N    M++   +   +     AG
Sbjct: 275 MKMRRDHVIPLCGQAMAVLETMKPISAHREHVFPSLKNPMLPMSSQTANAALRRMGY-AG 333

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           V  S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 334 VLVS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|299148781|ref|ZP_07041843.1| integrase [Bacteroides sp. 3_1_23]
 gi|298513542|gb|EFI37429.1| integrase [Bacteroides sp. 3_1_23]
          Length = 397

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 94/307 (30%), Gaps = 34/307 (11%)

Query: 54  STPKREYINSPRKKPTTLKW---------LISEYRKSAHWGS------LAVNSRISFESY 98
           +   ++       K  + ++         L+S Y +            +A+N+    E+ 
Sbjct: 77  ALKIQQEGKQVSAKEISFRYKGKDKPNIFLLSLYAEHNEQLKELVGISVALNTYKRHETS 136

Query: 99  FDQIIRKS------GDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV 148
                          D +  ++    +          R +  ++ ++++ ++  +F  AV
Sbjct: 137 LKLFKEFLMSTYQQSDVNMNEVDLVMMEKYKHYLMVVRHNNNNTTVKYIRNLGKVFNMAV 196

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLR 205
            ++ +  +P   +   K         T  +++   + +       Q R  F F  Y+GL 
Sbjct: 197 ERKIIVSSPIEQL-HLKTMEVEKEFLTGGELELLSKKEFSIERLEQVRDIFLFCCYTGLA 255

Query: 206 CSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
             D     +   +++       +       +         L +                +
Sbjct: 256 YVDVHSLTMKDIVKDGEKYWIKKARHKTNNMCHIPLITPALNIINKYSVHNQATGRLLPV 315

Query: 265 -NATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAE 320
            +  + + + K  A   G+NK  + H  R   AT        +   +    G K++   +
Sbjct: 316 LSNQKMNAYLKEIAAIVGINKNLTTHCARHTFATTVTLANNVSIENVSKMLGHKSIKMTQ 375

Query: 321 TYTKGAD 327
            Y +  D
Sbjct: 376 HYARILD 382


>gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1]
 gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1]
          Length = 279

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 76/273 (27%), Gaps = 17/273 (6%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +++  ++     T     I+ Y  +      +  +  S      ++     D +   
Sbjct: 2   QKERKDKKHAGEPAET----YINNYILTLKAAGQSPKTLESRRIQLVRMAI---DLNVTT 54

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           ++ + + + + ++     +      ++R  F +         +P   +   +       P
Sbjct: 55  VSNEELVTWLANKNWANETRKSNRAAIRGFFNYLFHTHIRTDDPAFDLPSVRPSRPLPHP 114

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKT 229
              + +           + RL        GLR  + CR     + N+ +     I   K 
Sbjct: 115 CPDQYITNALEQVHNN-KERLMIILAAGYGLRRCEICRIHSNDIINDAYGGYALIIHGKG 173

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289
               ++ +       +             +   + +        K  +       S H +
Sbjct: 174 NKERSLPISTDIAMHIIAEHGYLYPGRYPDTHVEESYIG-----KRLSDLLPNGWSGHSL 228

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY 322
           R   AT +         +    G ++V   + Y
Sbjct: 229 RHRFATTAYCKTHDIFAVSRALGHESVATTQRY 261


>gi|260437997|ref|ZP_05791813.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
 gi|292809594|gb|EFF68799.1| site-specific recombinase, phage integrase family [Butyrivibrio
           crossotus DSM 2876]
          Length = 269

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 82/276 (29%), Gaps = 23/276 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K   T      EY      G+L+ N+  S+    +             +  +++ +    
Sbjct: 2   KAKQTF----EEYL---RKGNLSGNTITSYLWTVNYFTDHY-----DTVNKENLLAYKGY 49

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 P +    + ++    ++  + +       +  +           +     Q  K
Sbjct: 50  LMEFFKPKTVNLRIQAINKYLEYLGKAKLTLKAVKVQQKNFLENVISNADYIFLKKQLKK 109

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---G 240
               E         +L  +G R S+  +  ++H++   F + T+                
Sbjct: 110 DGNME---WYFVVWYLAATGARVSELIQIKIEHIEIGYFDLYTKGGKLRRLYIPQKLKKE 166

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATIS 297
            ++ L  T       F+N    ++     S   K  A K G++K     H  R   A   
Sbjct: 167 TLEWLEETNRSSGYLFLNRYGDRITTRGISQQLKNYADKYGLDKKVVYPHSFRHRYAKNF 226

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            +  +    L    G ++++    Y +     +  +
Sbjct: 227 LEKYSDIALLADLMGHESIETTRIYLRRTASEQQAL 262


>gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3]
 gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3]
          Length = 342

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +      T            +  ++ T FS   +    KA ++K  +AH  R   AT 
Sbjct: 240 FHWQFFFPATRRCIHPSDGYICRHHIHPTAFSKALRLATKKAAIDKRVTAHTFRHSFATA 299

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
               G     +    G   +   + YT  
Sbjct: 300 LLRKGYDLRTIQELMGHTDIKTTQIYTHV 328


>gi|170750554|ref|YP_001756814.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657076|gb|ACB26131.1| integrase family protein [Methylobacterium radiotolerans JCM 2831]
          Length = 396

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 100/375 (26%), Gaps = 55/375 (14%)

Query: 25  FRKGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           F++G  R        E     A   + +  +  +       R  P T+      Y     
Sbjct: 16  FQRGGHRFYGTTQETERRRAEAIEQAEIRKAEAQVRRDRRSRGAPMTIDIAAMRYWNE-- 73

Query: 84  WGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK--------------- 127
              +   +    E   ++++   G +   + IT   +   V  R+               
Sbjct: 74  -RGMHTATARETERNLERLVEWIGPNTPLQDITDDTLAQLVARRRGQAKVNAARVKRPGK 132

Query: 128 -------HTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                   +P    + +   +R +   A +   VA+    +           R       
Sbjct: 133 PLGPLGLVSPGQVNRSVTQLLRRVLTRARKAWKVALPDEPNWTEHMLTEPRERVRELRHE 192

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           ++ +    E  + R    F   +GLR  +      + +      I+    G         
Sbjct: 193 EESRLEAVERDEYRAPRLFAQITGLRRREVTSLTWRQVDFGAEVIRVIGKGGKGHEIPIT 252

Query: 240 GFMKLLAMTPIGKETFFINNDKQ-------------------KMNATQFSIWFKAKATKA 280
             + LL     G+    +   +                     +    FS   +    KA
Sbjct: 253 PELHLLLWPLRGQHETHVFTYRCQRTRLCPTSKRRFVKGQIYPITYHGFSTHVRRGLEKA 312

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-------ADRIRLG 332
           GV +   H +R  SAT +  A      +       ++   E Y          A      
Sbjct: 313 GVADFRIHDLRHTSATRTLRATKNLKIVQKLLNHSSLSVTEKYAHADLDDLRDAMIETAA 372

Query: 333 IKNSRRISSVVDSDD 347
              +RR+ S   S D
Sbjct: 373 DSAARRLKSREKSRD 387


>gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453]
 gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453]
          Length = 268

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 33/237 (13%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           ++ +  +P++  +    +R    + ++Q++V  N   +VE PK++    + +TKE + + 
Sbjct: 11  MDKKGLSPNTVHKHHACIRKALDFGLKQQWVYRNVADAVELPKKERFEGKSYTKEQLNEL 70

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                +G++  +      Y GLR  +  R   +++     +I   +  T           
Sbjct: 71  LQKV-KGTKLEVPVYLASYLGLRREEISRLKWKYVNLEQRNINIVEVRTSAGRNVIIKGP 129

Query: 233 --------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                                     +    +L       +  +  ++ +       +  
Sbjct: 130 KTKESRRTLYITDELLEVLLRHRAKQEHLKNILKNEYEDSDYVYTRDNGKPYRVNSVTEQ 189

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
           F        + K   H +R   A+I    G     +    G   +    + YT   D
Sbjct: 190 FNKFLEDNKLPKIRLHDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTHRFD 246


>gi|296136647|ref|YP_003643889.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796769|gb|ADG31559.1| integrase family protein [Thiomonas intermedia K12]
          Length = 348

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 91/344 (26%), Gaps = 34/344 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPRKKPTTLKWLI 75
           R    +   R+     +            A+   +     +    +       TTL  + 
Sbjct: 7   RKAGWMAQIRRRGMPTLS-RTFDLKADAEAWARDVERELQRGNAAVLRDDAGKTTLAQVA 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI- 134
             Y  +        +S  ++         + G      I    + +  +       SA  
Sbjct: 66  ERYAATV-LPGKRAHSGKTY---LQAASSRFGPLFLSAIRAVDVAAWRDELLAGGLSAQS 121

Query: 135 --QFLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
               L ++  LF +A ++  + +    P   + +P +     R  T  ++          
Sbjct: 122 VIHHLNALSGLFSFAEKELSITLPAGNPVRGIRKPAKPRGRDRRLTAGELDYLLRAARAA 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCR------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    ++   +  S               LQ     +   K G   TV L    + 
Sbjct: 182 RARIGGLPQVITLAVESSMRLGELLGLEWSRIDLQKRTAHLVDTKNGESRTVALSSAAVA 241

Query: 244 LLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV--------NKSAHG 288
            L   P   +                          ++A  T  G+        +   H 
Sbjct: 242 TLQSLPRRIDGRVFGWAASDSFEKTWTRCKASARKLYEADCTAQGIRPDPAFLADLRFHD 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R  + +   + G    E+ +  G K++   + YT   +  +L 
Sbjct: 302 LRHEATSRLFEKGLGVMEVASMTGHKSLSMLKRYTH-IEAEKLA 344


>gi|256849149|ref|ZP_05554582.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256713925|gb|EEU28913.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 330

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 89/315 (28%), Gaps = 30/315 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLA 88
           G+R  L    ++          + +   ++       +  T  K     + ++     + 
Sbjct: 1   GKRDYLTKSFKTEKEAKVW---STTLELQKAKGQAIAQQNTLFKDFYYLFVQTVKVHDVR 57

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146
             +  ++      I          K+    ++S ++     H+  +  + L  +R   ++
Sbjct: 58  KATFDNYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKKTVTELLKKIRTALRY 117

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSG 203
           A  + Y+  +    ++   ++       +          +      ++  L     + +G
Sbjct: 118 AYVKGYIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHTDNEFNLMVLLEISTG 177

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTIITVELPDGFMKLLAMT 248
           LR  +      + +  +                     +   +  +V +P     LL   
Sbjct: 178 LRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRRSVTIPKNIYDLLKDI 237

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                 +  +    K +        K    K G+   + HG+R   A+           +
Sbjct: 238 SQKDSGYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDTHASFLFSNNIPLSYV 292

Query: 308 MATYGWKTVDQAETY 322
               G  ++   E Y
Sbjct: 293 SRRLGHDSILTTEKY 307


>gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 410

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 22/278 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGV 123
           T      EYR+       A  + + +E     ++          D   + I  + I    
Sbjct: 115 TFNEHNQEYRELMD-KEYAKGTVLRYERTVRYLVEFMREQYNCADIPLKSINYEFITKFE 173

Query: 124 ESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              K     A      +L +++ + K A+ ++++  +P   +   K+         + ++
Sbjct: 174 HFIKTQKGCAQNATVKYLKNLKKITKTAILKKWINEDPFADI-HFKQTKTNRDFLNESEL 232

Query: 180 QQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++  +   +  +    R  F F  ++GL  +D      +H+          +     T  
Sbjct: 233 RRIIAKDIDIERLQTVRDIFIFCSFTGLAFTDVKHLKAEHIVQADDGRWWIRKAREKTDN 292

Query: 237 LPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289
           + D         +L                   +  + + + K  A    + K  S H  
Sbjct: 293 MCDIPLLDIPRLILEKYKSRPGYSERGFLLPVPSNQRMNGYLKEIADICHIKKKLSTHIA 352

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           R   A+++     +   +    G   +     Y K  +
Sbjct: 353 RHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKIMN 390


>gi|290891528|ref|ZP_06554586.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429]
 gi|290478877|gb|EFD87543.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429]
          Length = 324

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/325 (8%), Positives = 82/325 (25%), Gaps = 27/325 (8%)

Query: 16  TRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R         +    G  +RI             + + +           + +     L
Sbjct: 5   KRGPNWYARVSRPNSRGGYQRINKGGFSTKREAQTWEAEVLTGKE------TKKDSDLLL 58

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HT 129
                ++ ++    +L   +  +++S +  + +   D           +  + +    H 
Sbjct: 59  ADYFKQWYETYKL-NLENQTLSAYKSTYLLLKKYEPDTLLTDFNRGKFQQLINAYGKNHA 117

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++  +    +    K A   + +     L +                + ++ +   +  
Sbjct: 118 MNTVKKRKVLIAASLKDAYADKLINDPVDLRINLVYSNKGKSADLKFLEKEEAQKLINYC 177

Query: 190 SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVE 236
            +      FLL + +                         +  +      +   T     
Sbjct: 178 IENHSLSNFLLLTCILSGARFGEISALVMSDIDQNARTISITKSKEQKTDKIKSTKNETS 237

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295
                M ++    + K +F  + +         +   K    K      + HG+R   A+
Sbjct: 238 NRVISMPIVWFQQLKKYSFDSDKELFPYTDQSMNRHLKVLCNKLDTKSVTIHGLRHTHAS 297

Query: 296 ISADAGATAHELMATYGWKTVDQAE 320
           +    G +   +    G   +   E
Sbjct: 298 LLLANGVSMQYISKRLGHANLMITE 322


>gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
 gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343]
          Length = 371

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 93  ADFLEYYRKQLRKHDQK------WEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLLSAK 146

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + T +SA  + ++ R   K   R   +  N    +E+ + +       + E++ 
Sbjct: 147 KLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVEELY 206

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           +      +    + A  F   + LR SD      + + +     K     T         
Sbjct: 207 KLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAEDII 266

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +   I  K     AG+ K  + H  R+  AT+ A
Sbjct: 267 PISEEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQA 326

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++   + Y K  D  +   + S++I
Sbjct: 327 AAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKI 365


>gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP]
 gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis]
          Length = 274

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 73/255 (28%), Gaps = 23/255 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y       +L+     S      +        D    + + I   +    +      
Sbjct: 28  IEKYCAFLEKRNLSKKYVDSSRRILSK------KLDVENNSHRKIMKIIVDDSNGAHYQR 81

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             L S +   K+  + + V     L +++     +         +  Q  ++      + 
Sbjct: 82  MLLASYKGFLKFHKKYKKVEDLLFLKIKKIDIVYRPVLKNKRLLKLTQFEENDSERIKKT 141

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           ++   FL  +G+R  +        +  N       K      +   +             
Sbjct: 142 KILIRFLYQTGIRIGEL----NTLILVNKKLYVHGKGNKNRQILYLEET--------FNT 189

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              +  + +  M+     I  K      G   S H +R+  AT    +GA    +M   G
Sbjct: 190 FRNYYPDLRYPMSLKTLRIEIKKI---LGKEFSPHSLRRSFATHMMQSGADPKTIMLQLG 246

Query: 313 WKTVDQAETYTKGAD 327
             +++    Y   ++
Sbjct: 247 HSSINTTFQYVNSSE 261


>gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
 gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A]
          Length = 346

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 88/294 (29%), Gaps = 42/294 (14%)

Query: 71  LKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITT 116
           +   I E+         +L+ N+  S+       I               G+   +    
Sbjct: 10  IADAIHEWHTVYLPCIRNLSHNALKSYGEGMGIYIDFLESSKGVTSNTLCGECFRKDWIE 69

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRP 173
           + I    E RK +P +    L+ ++   ++      Q          ++R ++  + +  
Sbjct: 70  EWIAWLKEVRKCSPQTCNHRLSILKNFLRFLAHKKIQFIKYDCDAAEIKRMQQPKKQVEV 129

Query: 174 WTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT 226
            TK  +++      +    G +    F  L  +G R  +     +  L       + +  
Sbjct: 130 ITKYTIKRIFASINTRTLIGKRDFALFNLLYSTGTRIDEILSLRLSALHLDETKGYILVL 189

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIWFKA 275
            K     T+ L +  +++L                        +  +K+ +   S   K 
Sbjct: 190 GKGNKQRTIYLLNSMVRILRHYVKLFHPANPLPSDFVFFPIYGHANKKITSEAISKRLKM 249

Query: 276 KATKA-------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
               A        V+   H  R   AT   + G    ++    G ++++    Y
Sbjct: 250 YVRIASQGLLEIPVDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKY 303


>gi|187923150|ref|YP_001894792.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714344|gb|ACD15568.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 365

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/341 (10%), Positives = 88/341 (25%), Gaps = 43/341 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +  +     +             A+  A        + I++      T+  LI +YR++
Sbjct: 10  RWRAQVRKRGQSIAKTFRTKGAAQAW--AREKEVEIEKGIHAVELATVTVGTLIRKYREA 67

Query: 82  AHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQF 136
                      S   +     ++  +       ++TT+ I    + R+ + +   +    
Sbjct: 68  RAESGRPVKPKSNEDY--ILQRLQDEFESDFAAQLTTQRIVQFAQKRRKSGAGGFTIDMD 125

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQFKSFWSEG 189
           ++ +  + +       +A+     + RP           +        +       W   
Sbjct: 126 ISKLGTVMRHTGSLLDLALPDATGIARPTLHHLNLIEAGKRRERRPTPEEIGKIFAWFAE 185

Query: 190 SQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              R      L         R  +        +         +           + ++ L
Sbjct: 186 HPEREQAMPDLLRVAMQCAFRRGELFNLQWDDIDAENHLALVRDRKHPRQKMGNNEWVPL 245

Query: 245 LAMTPIGKETF---------------------FINNDKQKMNATQFSIWFKAKATKAGV- 282
           +  +                              N    + +    S +FK      G+ 
Sbjct: 246 IGDSFEVIMRQARYPVPEAYAEKRKADPTVPPHKNEFIFRFDKGTASKYFKRACDDKGIV 305

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +   H +R  + +   +AG    E+ A  G K     + YT
Sbjct: 306 DLHLHDLRHEATSALFEAGWQIPEVAAVTGHKDWRNLKRYT 346


>gi|304409998|ref|ZP_07391617.1| integrase family protein [Shewanella baltica OS183]
 gi|307302289|ref|ZP_07582047.1| integrase family protein [Shewanella baltica BA175]
 gi|304351407|gb|EFM15806.1| integrase family protein [Shewanella baltica OS183]
 gi|306914327|gb|EFN44748.1| integrase family protein [Shewanella baltica BA175]
          Length = 443

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 99/362 (27%), Gaps = 53/362 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGH-GRRIR--LPYPHESTFIPAYMSAL-------------TG 53
            +  +    GK ++ FR+ H G+ +   +      T   A   A                
Sbjct: 35  GLILDVFPSGKKVFRFRRKHLGKDVTVTIGEFPHLTIENARKQAKHIAVDLAEGVNPNEA 94

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG----SLAVNSRISFESYFD-QIIRKSGD 108
               ++          +++ L   +              +NS    +S +   I  +   
Sbjct: 95  KRLAKQEAERKEALSISVQQLFDSFEAEFMVKIKTGERRLNSLKDIQSTWKNHIQPRIAH 154

Query: 109 FDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                ITT    + ++      S+A   + LT ++ +F          INP   +++   
Sbjct: 155 LPVESITTVEAENLLKLIITKNSAAVRNKCLTLLKSMFN------EQQINPFGRIKKLAA 208

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                     E     +S   E    R     LL +G R S      ++ + +       
Sbjct: 209 VKRERILNQHEVRALLESLEFEPPLYRDVVMLLLLTGQRKSCVFSMELREIDHQRGVWII 268

Query: 227 Q----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKA 275
                K+     V L    M +L                 + + +           ++  
Sbjct: 269 PTSKIKSKKPHAVPLTKEVMAILERRSNEAVQGDKYVFPAERSFSGHITENAGKGSFWYR 328

Query: 276 KATKAGV------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
              +AG+            N + H +R+  A+ S   G          G   +     TY
Sbjct: 329 ITERAGLRSPEKSATAKEDNVTIHDLRRTIASWSVMRGGNIQTTSKLLGHSDISITASTY 388

Query: 323 TK 324
             
Sbjct: 389 AH 390


>gi|299782827|gb|ADJ40825.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 367

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 102/361 (28%), Gaps = 33/361 (9%)

Query: 15  RTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R  +            +R +    + +    A  +A       +E + +P     TL 
Sbjct: 8   TKRGSRYQARVNWYDNQDKRHQKSAGYFNRRKDAVATAERVRDELQEQL-NPDLTEITLA 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                + +      +   ++  ++   + + +       + +     ++ +      H  
Sbjct: 67  DYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFINWYGABHAR 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKS 184
            S  +   +++ +  +A+  E +  +   +++    K    +        T   M   K+
Sbjct: 127 DSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVIANKDRERKVEYLNQKETAVLMDAVKA 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
                   +      L +G+R S+        L     +I   K+               
Sbjct: 187 DLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEKAFKPTKTLS 246

Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285
           +   + +    +K+LA          F+     Q       +   +    +   A     
Sbjct: 247 SRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGNALNKALRXIMHQQAIAKQGFH 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN--SRRISSV 342
            H +R          G   + +    G   +    +TY+   D  +    +   +++  +
Sbjct: 307 FHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDDLIVKKLQEL 366

Query: 343 V 343
           +
Sbjct: 367 I 367


>gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 311

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 83/291 (28%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ- 191
              ++  +R ++  AV        P L  +         +     +M +       G   
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLGDPS 132

Query: 192 ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                        +SG+   D      +++++ I     QK+G++I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                                              F+   K  A   G  +  +++ +R 
Sbjct: 193 LSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|332141767|ref|YP_004427505.1| site-specific recombinase, resolvase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551789|gb|AEA98507.1| site-specific recombinase, resolvase family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 298

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 97/316 (30%), Gaps = 38/316 (12%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            + + G      R   G+RI   +P +     A   AL GS               +   
Sbjct: 5   RQLKSGNWNVQIR-EQGKRISKTFPTQQE---AERFALMGSNEL------------SFHE 48

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132
           +  +Y +             S       + +         +I     +   E      S+
Sbjct: 49  VCDKYLEHMG---------DSVRYRVRCLKKNFKSPPTLAEIEAFKRQRLKE---VKSST 96

Query: 133 AIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           A   L  +  + K+ ++   +    P    + P       R  T+++++           
Sbjct: 97  ARLDLQMLSRIVKFGIKHFELDWPFPFNDFKYPPECQPRDRVVTQKELKLLLEDLPPLVA 156

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTP 249
              A E    + +R  +  +   QH++ +     +   K G    V L     ++L    
Sbjct: 157 S--AAELSYETAMRRGEIVKIQKQHIEFHQNRLYVPEAKNGYSRYVPLNAKATQILKDRL 214

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
           +      I  +     A   S  F+    +  +   S H +R  + T  A  G + ++L 
Sbjct: 215 VSCNNHQILYNV---TAESLSKAFRRACKRLEITGLSFHSMRHSAITKYAQRGLSVNQLK 271

Query: 309 ATYGWKTVDQAETYTK 324
              G ++ +  E YT 
Sbjct: 272 VISGHRSTEMLERYTH 287


>gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 80/279 (28%), Gaps = 26/279 (9%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESR---- 126
           EY  +     LA  +  ++ +    I +         D    ++  K I           
Sbjct: 116 EYHNTEMKDKLADGTMKNYYTTQKYIAKFLKEKYHRSDISLAELNYKFILDFETYLSKHQ 175

Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 P      +  +  L K                +  +           TKE++  
Sbjct: 176 PKDHQKPLHNNGIMKHIERLCKMVNMAVTMDWLAKDPFAKYKQHFDKVERFYLTKEELST 235

Query: 182 FKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTII 233
            +       + ++    F F  Y+GL   D+      ++      N+      QKT T +
Sbjct: 236 IEKKKFTIERLQVVKDLFLFSCYTGLAYIDTMNLTAGNIVKGIDGNDWLITSRQKTDTDV 295

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + L     +L+       +          ++  + + + K  A    +NK  + H  R 
Sbjct: 296 RIPLLPQAEELIKKYQDHPKAVNHGTLFPVISNQKTNAYLKEIADLCNINKAITFHIARH 355

Query: 292 FSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AT      G     +    G  T+   + Y K  ++ 
Sbjct: 356 TFATTITLSNGVPIESVSKMLGHTTIRSTQVYAKVVEQK 394


>gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 409

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 20/248 (8%)

Query: 96  ESYFDQIIR---KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV 148
             +  + I+   K  D  + ++T   I    +          S+     T ++ + + A 
Sbjct: 141 RIHLQKFIQRKYKVSDLAFSQLTEDFIHEFQQYFLGECGFQESTFYNVATHLKTVCRLAY 200

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSG 203
           R+          V+  K   +  +   KE +++ K+   E         R  F F  Y G
Sbjct: 201 REGLADTLLFDKVKISKGNKKLPKALDKEALEKLKALCFEDLEEEMETARDIFLFACYVG 260

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-- 261
               D       HL  +       K             +KLL       E F  +  +  
Sbjct: 261 AAYCDLMELSKSHLVRDDEGKMWLKFN--RHKTGVPCRIKLLPEAIRLIERFHCDERETL 318

Query: 262 -QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVD 317
              +    +    KA   +AG+    + H  R   AT+   + G     +    G   + 
Sbjct: 319 LPYIKYKSYQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNIS 378

Query: 318 QAETYTKG 325
             E Y K 
Sbjct: 379 MTERYAKV 386


>gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 325

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 78/281 (27%), Gaps = 31/281 (11%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPS---SAIQFLTS 139
           +  SR +  S+ + +    G           +   H+ +  E  + T     +   +L++
Sbjct: 43  SHRSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGRATATVNTYLSA 102

Query: 140 MR---------VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++          L      Q   A+        P+ +                   S G 
Sbjct: 103 LKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPRGRALPPEEIRALFGACEADDSSIGV 162

Query: 191 QPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +       +L  GLR S++        + +        K        +P G  + L    
Sbjct: 163 RDAAMLGVILGCGLRRSEAVGLDLCDIVTDERALRVLGKGNKERLAYMPAGTWQRLRKWI 222

Query: 250 -----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297
                        +   F      ++         + +   AG+   + H +R+  AT  
Sbjct: 223 DDVRGEKDGPLFTRIRRFDTLTNDRLTDQTVYHVLQVRQRLAGIAKCAPHDLRRTFATSM 282

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337
            D G     +    G  +V   + Y +  + R+R       
Sbjct: 283 LDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTARDRLD 323


>gi|261342738|ref|ZP_05970596.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315391|gb|EFC54329.1| site-specific recombinase, phage integrase family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 407

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 102/365 (27%), Gaps = 35/365 (9%)

Query: 14  ERTRHGKIIYYF--RKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK- 66
           + +R G + +YF  R G      +RI+L    + +   A                +P+  
Sbjct: 36  KVSRSGVLTWYFTFRIGGRESTSQRIKLGNYPDLSLKAAREK-REQCRAWLAEGKNPKHQ 94

Query: 67  ---------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                    KP T++  +  + +     + A N     E     I    G +      T+
Sbjct: 95  LSVTTQETLKPVTVRDALEYWIREYATHNRA-NVDKHIEQLNKHIFPYIGTYPLSMCETR 153

Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEY----------VAINPCLSVERPKR 166
           H        R   P +A   L   +   K+     Y          +        +R + 
Sbjct: 154 HWLECFARVRNEAPVAAGYLLQMCKQALKFCRVHRYAVSNVLDDLTIDDVGRKQNKRDRE 213

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            T         +    K      S  RL   F   +             +        + 
Sbjct: 214 HTRQELADIWRECSGLKFKPYYSSLLRLLVVFGCRTQELRLSRVTEWDLNDWVWTVPKEH 273

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNK 284
            K G  I   +P      +       ++  +   + K      S W +    + G     
Sbjct: 274 SKGGEKILRPIPVDIRPFIRQLLEQHQSTGLLLGEIKK-PEAVSQWGRMLYKRLGHSEPW 332

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNSRRISS 341
           + H +R+  +T   + G   H +    G         Y +     +++    K + R+  
Sbjct: 333 TLHDLRRTFSTTLNNMGIAPHVVEQLLGHALGGVMSVYNRSQYLPEKLDALNKWAERLEL 392

Query: 342 VVDSD 346
           + D +
Sbjct: 393 LSDEN 397


>gi|113868436|ref|YP_726925.1| phage integrase family protein [Ralstonia eutropha H16]
 gi|113527212|emb|CAJ93557.1| phage integrase family protein [Ralstonia eutropha H16]
          Length = 348

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 91/335 (27%), Gaps = 29/335 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R        RK      +           ++   +     +  +++    +  TL  L+
Sbjct: 6   KRGDYWRVAIRKRGYP-PQARTFDTKADAESWARQVEVEMDRGSFVDRREAERNTLGDLL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------K 127
             Y  S                           +    +T K + +  + R         
Sbjct: 65  LRY--SEEISPHKKGGEQEVLRIRKLRSDPIAHYKIAALTGKVLAAYRDRRLKGDGERRP 122

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW----------- 174
            + S+  + LT +  +   A ++  +   INP  ++ RP+      R             
Sbjct: 123 VSGSTVNRELTLISHVLNVANKEWDIHLAINPVSTIRRPRESRGRTRRLGAAEEARLFAE 182

Query: 175 ----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                +     +    S            L + +R  +        +      ++   + 
Sbjct: 183 LSASPRNGRGHYDKGGSRNPSILPLTILALETAMRRGELLSLRWSDVFLEDRFVRLHDSK 242

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
              + ++P     +  + P+ +     ++     +A      F     +AG+     H +
Sbjct: 243 NGESRDVPLSTKAVSTLAPLAELATSASDRVFPTSADAVKKAFTRACERAGIENFRFHDL 302

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           R    +  A+      EL A  G KT+     Y  
Sbjct: 303 RHEGTSRIAERLDNVLELSAVTGHKTLQMLRRYYH 337


>gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 320

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 76/302 (25%), Gaps = 48/302 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+ + R    +   ++ +  ++  +  + I        R +    +   + +     + +
Sbjct: 7   LLDQVRDRIRFRHYSIRTEQAYLGWIRRFILFHRKRHPRDMGAPEVERFLSALATEYNVA 66

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     ++  +         + +     V+R KR        T+E+++   +     +  
Sbjct: 67  ASTQNQALSAILFLYREVLGIELPWLDGVKRAKRPQRLPVVLTREEIRSVLAHLQGRNAL 126

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
             +  +     L      R     L      ++  K G      LP+     L       
Sbjct: 127 MASLLYGAGLRLLECVRLRVKDVELDRRQIVVRDGKGGRDRVTLLPESMRPSLEEQIDRV 186

Query: 253 ETFFIN---------------------------------------------NDKQKMNAT 267
                                                                +  ++  
Sbjct: 187 REIHNQDLTDGFGAVWLPHALARKYPNAPREFGWQYVFPSAKRSTDPRSGRRGRHHIDEQ 246

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K     AGV    S H  R   AT   +AG     +    G + V+    YT  
Sbjct: 247 TLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNTTMIYTHV 306

Query: 326 AD 327
           A+
Sbjct: 307 AN 308


>gi|77406880|ref|ZP_00783906.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|77174512|gb|EAO77355.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
          Length = 390

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/388 (11%), Positives = 111/388 (28%), Gaps = 56/388 (14%)

Query: 11  VTKERTRHGKIIYYF------RKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63
           +T+ + + G +IY         K  G+++           +            K      
Sbjct: 5   ITEVKKKDGTVIYRASIYLGTDKVTGKKVTTKITGRTKKEVREKAKQEAVEFIKNGSTRF 64

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                 + + L + +  S    ++  N++++ E      +I   G +   K+TT  I+S 
Sbjct: 65  KATSVXSYQELATLWWDSYK-HTVKYNTQLATEKLLTVHVIPIFGAYKLDKLTTPLIQSI 123

Query: 123 VESRKHTPSSA--------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----- 169
           +       +           +     + + ++ V  + +  NP   V  P+   +     
Sbjct: 124 INKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKR 183

Query: 170 -GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-----SGLRCSDSCRAGVQHL------ 217
                  +           + S+ R  +E  LY     +G R +++       +      
Sbjct: 184 VKHFENDELRTFFNYLNNLDKSKYRYFYEVTLYKFLLATGCRINEALALNWSDIDLDNAV 243

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-----------NN 259
                           +   +   +++    + ++      +                + 
Sbjct: 244 VHVTKTLNYKQEINSPKSKSSYRDIDIDSQTVTMIKQYRRRQIQEAWKLGRSETVVFSDF 303

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +  N        +    +A V N   HG R   A++  + G    EL    G  T+  
Sbjct: 304 IHKYPNNRTLQTRLRTHFKRANVSNIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSM 363

Query: 319 AE-TYTKGADRIRLGIKNSRRISSVVDS 345
               Y+  +       K      + ++S
Sbjct: 364 TMDIYSHLS--KENAKKAVSFFETAINS 389


>gi|159904528|ref|YP_001548190.1| integrase family protein [Methanococcus maripaludis C6]
 gi|159886021|gb|ABX00958.1| integrase family protein [Methanococcus maripaludis C6]
          Length = 322

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 82/310 (26%), Gaps = 30/310 (9%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITT 116
               P K+   +   +S++ +   +  +   +  +  S     +    +    D   +  
Sbjct: 12  TKREPVKETPKMNSWVSKFVEEREFDGIKPRTIENDVSRLKIYLDFINERLQKDADSVEN 71

Query: 117 KHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-------VRQEYVAINPCLSVERPK 165
                        R+ + ++  ++   ++V +K           +E +        E   
Sbjct: 72  HDFIKFFNYLDKERRLSKNTQNRYFNLLKVFYKIMKLNNFKDFEEESLDRKRFSRFEVKH 131

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FS 223
                +           KS      +  +    L  +G R S+      +        F 
Sbjct: 132 YDAIDLDTLNLILTGVVKSTGRSKVRDGIIIRLLWDTGCRLSEILNLRYKDCDFEEGSFK 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKA 277
           ++  K      V   +  + +L             +   +         +  S  F  + 
Sbjct: 192 LRNTKGKVERVVVCTNETLNILTQYIKHNVYQGHEDRIFQSTTGGKVERSHMSKVFAKQI 251

Query: 278 TKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K               H +R   A    + G     +    G  +++    Y    +R 
Sbjct: 252 KKLQDQGLISPNRRLVIHSLRHGRAVDLLEKGMPIDIVKEYLGHASLETTLFYAHSRERK 311

Query: 330 RLGIKNSRRI 339
              +K+ ++I
Sbjct: 312 DKMLKDIKKI 321


>gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
 gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M]
 gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M]
          Length = 308

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 71/238 (29%), Gaps = 13/238 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            S+  +I        +     +    I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +   P    ++ +          +E               RL   FL+ +G R  ++   
Sbjct: 123 IFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRL-SVFLVNTGCRLGEAIGL 181

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +Q    +    K+    TV L     K   +     +  F   ++ +     F   
Sbjct: 182 TWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVR-----FRQI 236

Query: 273 FKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 237 WNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|300790589|ref|YP_003770880.1| phage integrase [Amycolatopsis mediterranei U32]
 gi|299800103|gb|ADJ50478.1| putative phage integrase [Amycolatopsis mediterranei U32]
          Length = 401

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 90/342 (26%), Gaps = 46/342 (13%)

Query: 26  RKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            + +G+RI R       T     +  L  +  +     S      T++  ++++  S   
Sbjct: 29  WRPNGKRIVRKASGKTKTEAKNKLKELVRNLEEGAVEAS---TAYTVEQAMNDWLVSYER 85

Query: 85  GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
           G    N+  +  S  +  I+   G     K+    +   +  +      S+     + +R
Sbjct: 86  GERDPNTVKTVRSLVNNHIVPAIGARPLVKLEVDDVEDWLAEKAEVLVTSTLRNLRSILR 145

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
                A  ++ V  N  L  E                    +     +E S  R      
Sbjct: 146 RAINRAQVRKRVRYNVVLLCEELPAGKGAGRPSKALTLAQAEAVLTAAESSPMRAYIVVS 205

Query: 200 LYSGLRCSDSCRAGVQHL---------QNNIFSIKTQKTGTIITVELPDGFMKLLA---- 246
           L +G R  +       H+              ++K  ++             + LA    
Sbjct: 206 LLTGARTEEMRPLTWDHVDLVGKPTASPAIPPNVKVWRSVRARGETKTRKSRRTLALPER 265

Query: 247 --------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
                                        F  N   + +       F+     AG+    
Sbjct: 266 AVKALEAHQVAQQAAKAVAGDDWREHGIVFATNVGTERDVNNVRRDFRRVIKAAGLNPAE 325

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            +   +R    +I +D G    E+    G       E  Y K
Sbjct: 326 WTPRELRHSFVSILSDGGMPIEEISRLVGHSNTTVTELVYRK 367


>gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
 gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16]
          Length = 380

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 22/276 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK------- 127
           +Y K      +   SR          ++         R++  K+I   VE  K       
Sbjct: 94  DYIKCLADKDIEKTSRKVSMYTLIYHLQHYDKMGIRLRQVDKKYILGFVEYLKTATQKHC 153

Query: 128 -----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDM 179
                 + ++ + +          AV  E +  NP   ++    PKR+       T +++
Sbjct: 154 KSVKNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDEL 213

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237
           +         +  + AF F  + GLR SD       +L+                  +  
Sbjct: 214 KILSQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILS 273

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
                + L   P+  +        +  ++  + +      A KAG+  + + H  R   A
Sbjct: 274 LPLSKEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 333

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           T+    GA  + +    G   +   + Y K  D  +
Sbjct: 334 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 369


>gi|229512711|ref|ZP_04402179.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
 gi|229350221|gb|EEO15173.1| site-specific recombinase phage integrase family [Vibrio cholerae
           TMA 21]
          Length = 414

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 98/364 (26%), Gaps = 38/364 (10%)

Query: 19  GKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKREY--INSPRK 66
           G + + FR    G  +R+ L    + + + A   A         G  PK +   I     
Sbjct: 45  GNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETL 104

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           KP +++  +  +       + A N+      +   I    G     +  T H     +  
Sbjct: 105 KPVSVQDALEYWLVEYAESNRA-NADKHRSQFQKHIYPYIGALPLAQTETHHWIECFDRV 163

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----- 173
                  ++  P +A   L + +   ++   + Y        +       +  +      
Sbjct: 164 RKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKDRVLT 223

Query: 174 ---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               +                  L    +++ G R  +   +  +            K  
Sbjct: 224 AQELSDLWNAVQTPNKFLPYYCHLVKFLIVF-GARTQEVRLSKWKEWDFETLLWTVPKEH 282

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVN--KS 285
           +    ++       L    +  +           ++ +    S   +    + G     +
Sbjct: 283 SKTDEKIIRPIPDELVPWLLQLKADSDKEALILGEEKSPETVSQQGRFFWQRLGHEEAWT 342

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSV 342
            H +R+  AT   + G   + +    G         Y +       R  ++    R+  V
Sbjct: 343 LHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQYILEKRHALEVWLNRLEGV 402

Query: 343 VDSD 346
              +
Sbjct: 403 SPLN 406


>gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium]
          Length = 161

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLYRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT    AG     +    G   V   + YT 
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
 gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_19]
          Length = 311

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              ++  +R ++  AV   E   +           +++  +   +E +++  +   E   
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLEDPS 132

Query: 192 PRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R           +SG+   D      +++++ I     QK+G++I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                    +                         F+   K  A   G  +  +++ +R 
Sbjct: 193 LSACTAKESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|153952355|ref|YP_001397994.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939801|gb|ABS44542.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 286

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 81/283 (28%), Gaps = 44/283 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L+  I  Y K     S + N+ + +     + +  S D         I T  + + +   
Sbjct: 12  LERWIEAYLKHIQALSYSNNTFLLYRRILLEFVEYSLDYQDEMQINDIKTTFLVNFLNYL 71

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------- 170
           ++        +  + I +L  +   F +              +++ + +TE         
Sbjct: 72  ENNSKNGNKLSKKTKITYLRVLTSFFYFISDNNDDLFIFSFDMKKIRFRTEKAEEKLNYL 131

Query: 171 -----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                IR     + ++ K       +  L  + +LY GLR S++    +   +       
Sbjct: 132 NENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVD---- 187

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                           ++         +     +  + +N +   +       KA +  K
Sbjct: 188 --------------DELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKK 233

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             H +R   A      G     +        ++    Y K  +
Sbjct: 234 GLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATN 276


>gi|324012822|gb|EGB82041.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 358

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 103/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPKNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGI 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|296159076|ref|ZP_06841903.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295890637|gb|EFG70428.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 365

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 92/341 (26%), Gaps = 41/341 (12%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +     RK       +    ++        A           N+  +   T+  LI++YR
Sbjct: 10  RWRAQVRKRG---QSIAKTFKTKGAAVAW-AREKEVEIENGANAVEQATVTVGTLITKYR 65

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQF 136
           ++      AV  + + +    ++  +       ++TT+ I    + RK + +   +    
Sbjct: 66  EARSESGRAVKPKSNEDYILQRLQDEFESDFAAQLTTQRIVQFAQKRKKSGAGGFTVDMD 125

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQFKSFWSEG 189
           ++ +  + +       + +     + RP           +        +  +    W   
Sbjct: 126 ISKLGTVMRHTGSLLGLTLPDATGIARPTLHHLNLIEAGKRRERRPTPEEVEKIFAWFAE 185

Query: 190 SQPRLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              R      L         R  +        +  +      +           + ++ L
Sbjct: 186 HPERQQAMPDLLRVAMQCAFRRGELFSLRWNDIDADNHLALVRDRKHPRQKIGNNEWIPL 245

Query: 245 LAMTPIGKETFFINNDKQKMNAT---------------------QFSIWFKAKATKAGV- 282
           +  +              +                           S +FK    + G+ 
Sbjct: 246 IGDSFEVIMRQPRYPVPPEYTERRRADPALPPHRNEYIFRFDKGTASKYFKQACDEKGIV 305

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +   H +R  + +   +AG    E+ A  G K     + YT
Sbjct: 306 DLHLHDLRHEATSALFEAGWQIPEVAAVTGHKDWRNLKRYT 346


>gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella
           oneidensis MR-1]
 gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella
           oneidensis MR-1]
          Length = 310

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 80/289 (27%), Gaps = 34/289 (11%)

Query: 86  SLAVNSRISFESYFDQII-------RKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQ 135
            LA NS+ S  S    I           G      I       IR+ +   + +  S  +
Sbjct: 13  RLAPNSQRSIASQMRSIAQLMDWPDEVIG-KQLSSINYQQAMQIRALLIHEQWSARSINR 71

Query: 136 FLTSMRVLFKW--------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +T+++ + K           +  ++     +     +         TK      K   +
Sbjct: 72  AMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDT 131

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIIT 234
            G +    F   L +GLR S+     +    +   +IK                      
Sbjct: 132 YGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDWVEQHV 191

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293
           +   +     L        T  I    + ++        K K    GV   S H +R+  
Sbjct: 192 IAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGVVGASPHDLRRTF 251

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341
            T   +     + +    G   +     Y K  D  +R        +S+
Sbjct: 252 ITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMREAAATLNYVSA 300


>gi|10955493|ref|NP_065345.1| site-specific recombinase [Escherichia coli]
 gi|48994|emb|CAA44100.1| site-specific recombinase [Escherichia coli]
 gi|9971687|dbj|BAB12638.1| rci [Escherichia coli]
          Length = 374

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 104/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 3   QKIKIRKMTISRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 60  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSG 119

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 120 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M P        +       ++ F   ++    +  +    
Sbjct: 180 TKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSY-----TSSGFKSAWRTALQELKIENLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 235 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|124269007|ref|YP_001023011.1| phage-related integrase [Methylibium petroleiphilum PM1]
 gi|124261782|gb|ABM96776.1| phage-related integrase [Methylibium petroleiphilum PM1]
          Length = 403

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 108/348 (31%), Gaps = 34/348 (9%)

Query: 19  GKIIYYFRKG-HGRRIRLPYPHESTF---------IPAYMSALTGSTPKREYINSPRKKP 68
           G I++ +R    GRR +L                   A  +A    +P ++   + R   
Sbjct: 34  GGIVWRYRYRVDGRREKLTLGKYPALTLKNARLKRDEAAQAAAMSKSPAKQKQLAKRAAA 93

Query: 69  --TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
             TT+      + +          +      +   I+   G    R +TT+ +R+ +  +
Sbjct: 94  DATTVSEFGERFFREIVAKDRQDITI-PRRYFDKAIVPAIGAKPVRDVTTEDVRAIIWKK 152

Query: 127 KHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQF 182
           K     ++A      ++ LF +A+    + +NP   L +    +     R  + ++++ F
Sbjct: 153 KDEGFDAAAGSIRGVLKRLFDYAMTAGLIFVNPVLALPMRHVHKTKSRERALSPDEVRVF 212

Query: 183 KSFWSEGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231
                E +  R        +L + +R S+   A  +H+             +        
Sbjct: 213 LKAAFESNIRRQFKIGLHLILLTMVRKSELLLARWEHVDFEQAEWHIPAEHSKTGKPHIV 272

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
                       ++ LA           +  K        +   K       +   + H 
Sbjct: 273 FLSRQSIALFKELQALAGGSALVLPGRGSLTK-PFAHNAINTALKVALAGQPIPAFTVHD 331

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +R+ ++T+  + G  +  +              Y +     + R  ++
Sbjct: 332 LRRTASTLLHENGWASDVVEKALNHTIGGVRGVYNRAEYEPQRREMLQ 379


>gi|315658828|ref|ZP_07911695.1| prophage L54a integrase [Staphylococcus lugdunensis M23590]
 gi|315495952|gb|EFU84280.1| prophage L54a integrase [Staphylococcus lugdunensis M23590]
          Length = 406

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 107/402 (26%), Gaps = 73/402 (18%)

Query: 13  KERTRHGKIIYYFRKG-------HGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64
           K   +HG + Y F +          RR+ +    +           L      +    +P
Sbjct: 5   KFTNKHGDVQYRFYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQKLLNKRIEAKLNDKTP 64

Query: 65  RK-KPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 65  TTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 124

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ER 163
             +            +  L+  + +F++  R   +     L                 +R
Sbjct: 125 VFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 184

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS------GLRCSDSCRAGVQHL 217
            K           +D+         G   R      L +      G+R  +      + +
Sbjct: 185 NKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQTLNGMRIGEMLAIQNEDI 244

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 245 DFDNKSLNINGTIHWFHNESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 304

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G+ K  S+H +R    ++    G 
Sbjct: 305 WNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEISSHILRHSHISLLTQQGV 364

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 365 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
 gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC
           43184]
          Length = 333

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 8/221 (3%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
              +  + +SA  + +  R + K A R +Y+  NP   +E+ + +       T+++++  
Sbjct: 116 HTDKMVSRNSAASYFSLFRGVLKLAYRDKYLRENPNDFLEKIESRDIHKEFLTQDELKTL 175

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            S   +    R A  F   +GLR SD      ++L              + T +     +
Sbjct: 176 ASTPCDIPVLRNASLFSCLTGLRISDILNLKWENLCTAPDLG---HCIRLRTQKTQTEAL 232

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV--NKSAHGVRKFSATISAD 299
             ++                K      + +  KA   KAG+  + + H  R   AT+   
Sbjct: 233 LPISYEAYALCGEPGTGKVFKELRRCMTGYPLKAWIKKAGIQKHITFHCFRHTYATLQIA 292

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           AG     +      K V   + Y +     +   +   +IS
Sbjct: 293 AGTDIFTVSKMLTHKNVATTQIYAELVSEKKR--ETVDKIS 331


>gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300]
 gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300]
          Length = 369

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 96/324 (29%), Gaps = 37/324 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSG----- 107
             +     +  +   TL  L++ Y   KS+  G  +  +  ++     Q +  +G     
Sbjct: 21  RRREGLRAAHTQDADTLIDLLNTYIRLKSSRKGRTSALTLKAYAESVRQFLAFTGPPESP 80

Query: 108 DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFK---WAVRQEYVAINPCLSV 161
                +++ +     +   +     P++  + L  +R L K   WA   +          
Sbjct: 81  SRALNQLSAEDFEVWLLHLQEAGLKPNTIKRHLYGVRNLMKALVWANVLKADPSAGVSPP 140

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAG 213
             P       R  T+  M+   +   E         S+  L        GLR ++     
Sbjct: 141 TDPTPAHAKKRALTQAQMRALLALPGELHPEDSVQASRDALLLALGGTLGLRAAEIVGLD 200

Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN------------NDK 261
           +  +     ++  +  G    V      +K L    +                    N  
Sbjct: 201 LADVDLATGTLTVRGKGGKTRVVPLPAGVKALLQRWLPARQTVNPKVPALLVSLSSLNRG 260

Query: 262 QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            +++         A   + G+       H +R+ + T    A    H +    G  +V  
Sbjct: 261 GRLSTDGARFIAHAYYRQLGLPPEMWGLHTLRRTAGTHLYRATRDLHVVADLLGHASVTT 320

Query: 319 AETYTK-GADRIRLGIKNSRRISS 341
           +  Y K  AD  R  ++   R+  
Sbjct: 321 SAIYAKMDADVRREAVEALERLQQ 344


>gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084]
 gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084]
          Length = 268

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 74/259 (28%), Gaps = 18/259 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSA 133
            E+ +      L+ N+  S+    +         +Y  +  +++ +          P + 
Sbjct: 4   QEFEQHLRREGLSSNTVESYLWTVEYF-----HANYDGLCEENLLAYKGYLMEYFKPKTV 58

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              + +M     +   Q        +  +              +           G+   
Sbjct: 59  NLRIQAMNKYLDFLGLQHLRVRVVKIQQKPFLENVIS----NSDYRFLKTCLKDAGNYQW 114

Query: 194 LAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
               + L  +G R S+  +  V+H++   F I ++               + L+      
Sbjct: 115 YFVVWFLGATGARVSELIKLKVEHVEEGHFDIYSKGGKLRRLYIPKKLREEALSWLRERG 174

Query: 253 E---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                 F+N   + +     S   K  A K G+ +S    H  R   A    +       
Sbjct: 175 RKSGYLFVNRYGKTITPRGISQQLKKYARKYGIEESVVYPHSFRHLFAKNFLERYNDIAL 234

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 235 LADLMGHESIETTRIYLRR 253


>gi|225405812|ref|ZP_03761001.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
 gi|225042679|gb|EEG52925.1| hypothetical protein CLOSTASPAR_05033 [Clostridium asparagiforme
           DSM 15981]
          Length = 348

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 76/265 (28%), Gaps = 17/265 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RK 127
              +  Y  +         +  ++   +        +     ITT+ IR  +      R 
Sbjct: 64  AEWVRLYLATMVVRGCTEKTVETYTQEYKTFFGTI-NKAIPNITTRDIRGYLAHCKLVRH 122

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FW 186
           +  ++       +R LF+W   +EY+  NP L ++  K        ++ E +  +K    
Sbjct: 123 NKDTTINNKTRMLRGLFEWLTEEEYIDRNPMLRIKDNKVDHRVKEVFSDEQVTIYKDLAK 182

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
             G +     +FL  +G+R S+        +           K      V         L
Sbjct: 183 QHGKRSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERPVYFSGDAAVHL 242

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKA----TKAGVNKSAHGVRKFSAT 295
                 +                ++      +  +         AG+  + H  R+   T
Sbjct: 243 RDYLESRTDNNPALFVGIRKPFNRLTDDAVRLILREIRDMDDRMAGIAINPHKWRRQFVT 302

Query: 296 ISADAGATAHELMATYGWKTVDQAE 320
              +       +    G K ++  +
Sbjct: 303 ELLEKDVPLTLVADLAGHKNLNTTK 327


>gi|187477776|ref|YP_785800.1| phage integrase [Bordetella avium 197N]
 gi|115422362|emb|CAJ48887.1| Putative phage integrase [Bordetella avium 197N]
          Length = 415

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 35/285 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           ++ Y+K A  GS++ ++ + +    +  +  + G+    ++    +R+ +     T  + 
Sbjct: 108 LALYQKQAENGSISHSTLLGYTKAINHFLKPRWGETPVAELAPADLRAWIAGMGVTGKTV 167

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192
              LT +R +   AV  E +  +P   +   K   +  R    E             +  
Sbjct: 168 RNRLTPLRSVLDDAVNDELLESSPLDRIALGKLIKQTSRKSDYEVDPFDMDEVQALYRAA 227

Query: 193 ----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------- 232
               R   +F L +GLR  +        +     +I+ ++                    
Sbjct: 228 REDERPFIQFWLETGLRPGEVMAVSWGGVDWIHNTIRIEENIVTGIVDGKVAQVLKKPKT 287

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAG 281
                 +EL    +  L                    +  +          ++    +AG
Sbjct: 288 KSGIRDIELSPLAVAALQAQKAYSFLAGGRIWHDPRRSQPWATESQIRKSLWQPLCKRAG 347

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V     + +R   A+    AG   + +    G   V+   + Y K
Sbjct: 348 VRYRNPYQMRHTFASTHLTAGRNPYWVANQMGHVDVEMVFKIYGK 392


>gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
 gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20]
          Length = 406

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEVNFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G+ K+   H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|260425689|ref|ZP_05779669.1| phage integrase family protein [Citreicella sp. SE45]
 gi|260423629|gb|EEX16879.1| phage integrase family protein [Citreicella sp. SE45]
          Length = 268

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 104/261 (39%), Gaps = 5/261 (1%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
           ++R + E  F  +   +G  D  K+ T H+    ++    P+ A + + ++ VL K+AV+
Sbjct: 9   HTRRNHERNFRYLRETAGKIDPAKLRTVHVYEMRDALADKPTDANRKIDTLLVLMKYAVQ 68

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
             ++  NP   ++R     +  +PW  + ++ F++      +  L FE LL +G R  D 
Sbjct: 69  IGWIDRNPAQDIQRLSPTGKKRKPWPADLIEAFRA--EAEGRALLLFEMLLGTGQRIDDV 126

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
            +     L ++ F++   KT   + + L D    +LA             D Q+++    
Sbjct: 127 LKLRWSDLDDDGFTLVQGKTKAELYIPLTDRLRAVLAAEKKRGLFIVCREDGQRISYPSA 186

Query: 270 SIWFKAKATKAG-VNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGAD 327
                    K G  +   H +R  +A+  A   G T+  + A  G  +      Y   A 
Sbjct: 187 HKDIMTVRRKIGAEDYDIHALRYAAASEIAAIPGMTSDHVKAITGHASGAMIRLYAGAAQ 246

Query: 328 RIRLGIKNSR-RISSVVDSDD 347
           +     +  + R+       +
Sbjct: 247 QKARATEAQKARMDRTKPKRE 267


>gi|256849851|ref|ZP_05555282.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|262046902|ref|ZP_06019862.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
 gi|256713340|gb|EEU28330.1| Lj928 prophage integrase [Lactobacillus crispatus MV-1A-US]
 gi|260572884|gb|EEX29444.1| prophage integrase [Lactobacillus crispatus MV-3A-US]
          Length = 399

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 105/386 (27%), Gaps = 61/386 (15%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRK------GHGRRI---RLPYPHESTFIPAYMSALTGST 55
            +  P +T+ + ++GK  +  R         G+ I   R              +      
Sbjct: 3   RKKDPEITEYKLKNGKKYFRLRTYIGINPETGKVINVTRSKLKSRKEAEELRRNLKAQGP 62

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
                     +K  T+ ++ + + +      +  ++    +  +      + GD    +I
Sbjct: 63  SALSQKIETAQKKITVSYVYNVWLEVMK-QDVRGSTLGRLKDTWKNHTEPEFGDTYIDRI 121

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           +  H++  V        +    +  +  + K+A+ + + + +P   V  PK+  +  R  
Sbjct: 122 SPDHVQKYVNDLASKYVTYKSIVNQLHRIIKYAIFRHWCSKDPFDFVIMPKKSAKSSRDN 181

Query: 175 TKEDMQQFKSFWSEG-SQPRLAFEFLLYS-----GLRCSDSCRAGVQHLQNNI------- 221
           ++   +  +       ++     ++  +      G R  ++       +  +        
Sbjct: 182 SRNFYELDELKHFLDIARDYSRMKYTYFLTVASLGCRRGEALALKWSDVDFDKRVVKIER 241

Query: 222 -------------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                                         + ++    +   +             +   
Sbjct: 242 TVAKDDNGKKTIDDVKNGVHHAVPMSDNLYMILKEYREYCDEIGDHCEWIFHTKDGSYNW 301

Query: 263 KMNAT----QFSIWFKAKATKAGVNK-----------SAHGVRKFSATISADAG--ATAH 305
                        + K +  K                + HG+R   AT+  D     T  
Sbjct: 302 AQQPDFWLKYLYKFDKKQCEKWNKEHPNDKKEPLRKITPHGLRHTLATLLYDGNERITPK 361

Query: 306 ELMATYGWKTVDQAE-TYTKGADRIR 330
           ++    G KT   A   YT    + +
Sbjct: 362 DVQYVLGHKTSKTAMEIYTHVTKKQK 387


>gi|169628813|ref|YP_001702462.1| putative phage integrase [Mycobacterium abscessus ATCC 19977]
 gi|169240780|emb|CAM61808.1| Putative phage integrase [Mycobacterium abscessus]
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 100/348 (28%), Gaps = 42/348 (12%)

Query: 34  RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93
           R      +      +  L           SP      L+  ++ + ++     +   +  
Sbjct: 71  RRRQTVSAKDKGVALDKLRDLRSAIRSGKSPTSSKVHLEQWLNHWLETIQKPRVRPTTYK 130

Query: 94  SFESYFD-QIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151
            +E+     I+    G     K+T   +R  +         A +   ++      A+ + 
Sbjct: 131 YYETTVRLYILPFIDGRTQLGKLTPAQVRKMIAKNGTRN--AQKAHQTLVKALGDAMDEG 188

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            +  N    V++PK      +P+T ++ +Q   +           +  + ++G R  +  
Sbjct: 189 MLDKNVAAVVDKPKHVAIERQPFTFDEARQIIATAIKRNDPWATMWAAMFFTGARQGEII 248

Query: 211 RAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--------------- 249
                         +  + ++          +     + L    P               
Sbjct: 249 GMEWDRCDLEKGLFDFSWQLQQLPPELPRGFKHRPCHLSLAWTKPKTKAGARVAPMTKPL 308

Query: 250 --------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                               + + D   ++ T  S  ++A    A V  +S H  R  +A
Sbjct: 309 QAIMEAYAKTDTGPNPHGLVWRHPDGHPISPTDASDAWRALVKAADVPYRSMHSARHTTA 368

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
           T+  +AG +    M   G  +    + Y     +  R  + N   + S
Sbjct: 369 TLLNNAGVSQETRMKVVGHSSAVAQQIYVHVDHEPARAALSNLNELLS 416


>gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSERVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|85715942|ref|ZP_01046919.1| phage integrase [Nitrobacter sp. Nb-311A]
 gi|85697140|gb|EAQ35021.1| phage integrase [Nitrobacter sp. Nb-311A]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 89/357 (24%), Gaps = 49/357 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPA-------YMSA-----LTGSTPKREYINSPR 65
            G  +    +G G             + A       Y  A       G   +       +
Sbjct: 44  SGSWVARHYRGAGVYATEALGVADDTLEADGVKVLDYWQAQDLARRWGEHQRLVAEGIIK 103

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVE 124
               T+   + +Y         +  +R   +  FD       G     K+T   +     
Sbjct: 104 PGSYTVANAVDDYMAEIEAEK-SPAARQGAKYVFDAFVRPDLGAIQVEKLTADRLTRWRN 162

Query: 125 SRKHTPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAIN 156
                P                             SA + LT ++     A     ++ +
Sbjct: 163 KLATQPRRIRMKRTATEIATKPTPDDEDARRARKASANRILTMLKAALNRAFHAGRISSD 222

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
                 +P ++ +          +  +   +     R   +  L +G R ++  R   + 
Sbjct: 223 GAWRKVKPFKRVDEAVVRYLSAAEARRLVNACSEDFRKLVQAALLTGCRYAELARLKCRD 282

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA- 275
              +  ++  + +   +   +     K          T       +   A   +   K  
Sbjct: 283 FNADSGTVAVRLSKGRVRHVVLTDEGKAAFQAWTSDRTTADLVFIRADGAAWGTSHQKRP 342

Query: 276 ---KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
               + +AG+    + H +R    +  A  G     + A  G       E  Y   A
Sbjct: 343 LEEASERAGITPAVTFHILRHTHGSHLAMNGVPMGVIAAQLGHADTRMTEKHYAHLA 399


>gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium
           matruchotii ATCC 14266]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 102/357 (28%), Gaps = 57/357 (15%)

Query: 14  ERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           +R R+  I +   +R   G+              A+      +  + E+++ P+    T+
Sbjct: 33  KRIRNTGISWQGRYRDASGKEHS-KTFRTKREAKAWEDDQIRAVRRGEWLD-PQTSTITV 90

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRK- 127
             L+ +        S   N++ +     + ++   GD        +    +RS +   + 
Sbjct: 91  HELVKK----KLSQSAKPNTQQAR----NYLLANLGDLSPIPITALRPAMVRSWLHVLET 142

Query: 128 -------HTPSSAIQF------LTSMRV-------LFKWAVRQEYVAINPCLSVERPKRK 167
                   +P +A         L ++         + +  +R   ++             
Sbjct: 143 GRPWVSDRSPLAANTISMIAGQLRAILTQAVNDDVILRHPMRGVVISSASKQVERDDIPD 202

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225
           TE I+   +      +         R+       +GLR  +     V+ +      +   
Sbjct: 203 TEEIQALIRAAYSSGRGVSPNPQLARMIIVA-ATTGLRGGEIGGLRVKDVDFFRRELHVS 261

Query: 226 ------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-----QKMNATQ 268
                        +      TV L +  +  L      +              +  N+  
Sbjct: 262 QQVSQNSAEPTAPKSRRASRTVPLTEETLAALNTQLRERPRGREETIFAAKSGEPYNSLA 321

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
               FK    + GV  + H +R + A+   ++G +   +    G  +       Y  
Sbjct: 322 IGTQFKNLTKRVGVTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAH 378


>gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70]
 gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 304

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 89/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           + EY         + N+ IS+ +  +Q ++         +T+  IR  ++          
Sbjct: 2   LHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV    +  NP   +   +    + E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVAHHKLEQNPMRDIQDLKSADEENEKIMWLTEEEFEDLLQ 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMRRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLAFRAQMAKKKPHVATSPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|331672418|ref|ZP_08373209.1| putative integrase [Escherichia coli TA280]
 gi|331070613|gb|EGI41977.1| putative integrase [Escherichia coli TA280]
          Length = 412

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 105/359 (29%), Gaps = 37/359 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E   + +   
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREIAAQCRAWLAEGKNPRYELNRAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGALPLEKCELRHWLAC 159

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +   K +P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSERVLTNKE 219

Query: 179 MQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +               +  RL   F   +        +             +  KT  
Sbjct: 220 LGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
            I   +P+  +  +           +   + K  ++       A         + H +R 
Sbjct: 280 AIFRPIPESILPFITQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQAPWTLHDIRH 339

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
              T+  D G   H +      +       Y      D  R  +     R+  + ++D+
Sbjct: 340 TFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLELLQNNDE 398


>gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 170

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 7/146 (4%)

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246
             +    F  L  +GLR S+        +  +     ++  K        L    MK L 
Sbjct: 5   DLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLT 64

Query: 247 MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301
                 +      + +       +  S   KA A +AG+ K    H +R   AT   + G
Sbjct: 65  EYNRLYKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 124

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                +    G   +   E Y   AD
Sbjct: 125 TDIKIVKELMGHNNIKTTERYVHIAD 150


>gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 387

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 100/377 (26%), Gaps = 70/377 (18%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +LP  + K   R+G  + Y                         A    + K       
Sbjct: 5   KKLPSGMWKGAYRYGVKVLYV---------PGTYPSKAEAKRQADAKEVESRKIPAPAPL 55

Query: 65  RKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122
                T       E++      +++  ++     Y +  ++    D+    I    ++  
Sbjct: 56  AAPAKTRFADFEPEWQA---LRTVSEGTKRRKACYLNLHVMPYWRDWWIEDIKRSDVQRW 112

Query: 123 VESRKH-----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           V                       P+S  Q L+ +    + AV +E +  NPC  V RP+
Sbjct: 113 VNQLGEPVVEELPGGKLRTVRDLAPASVYQCLSMLSGYLEAAVVKEVIGANPCRGVARPR 172

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223
                 R   + +    + F        L       +G+R  ++    ++    ++    
Sbjct: 173 PTPAPNRYLERFEFDGIQRFHKLAQDGFLCDFLH-ETGMRLGEAYGFHIESYNPHLMIVE 231

Query: 224 -----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------- 262
                      +KT K      V +       +      +        +           
Sbjct: 232 VERNWDSEALVMKTPKDHQRRAVPVSRRLAARIDAHIAERGLGKPPQVRYEKGLRKPTTG 291

Query: 263 ---------KMNATQFSIWFKAKA---TKAGV---NKSAHGVRKFSATISADAGATAHEL 307
                     ++  +F   F+A      +AGV   +   H +R   A+     G     +
Sbjct: 292 LLFTEDGRGPVDDHRFENRFQAACAHARRAGVLIGHVRRHDLRHTCASRLLRKGVPLSVV 351

Query: 308 MATYGWKTVDQAETYTK 324
               G  +    E Y  
Sbjct: 352 QEILGHASSKTTEIYKH 368


>gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
 gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2]
          Length = 341

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 74/313 (23%), Gaps = 55/313 (17%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFL 137
                ++ +  S+ ++  +           K                    +P S     
Sbjct: 28  RLRKWSLATEKSYCAWVRRFGVWLMVTPAVKTLPDATARVTAFLAGLVSGPSPRSGTTLK 87

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLA 195
            ++  L  +        +     + RPK         T+E ++ +      S     +L 
Sbjct: 88  QALNALVFFYEHVRDEPLGRLGDIPRPKMAVRAPTVLTREQVKAWIGAVEDSHDQPYKLI 147

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI------------------------------- 224
              L ++G+R S+     VQ +      I                               
Sbjct: 148 CRLLYFTGMRISEVLNLRVQDIIWEHSEILLRAAKGNKDRRVPLPCAVMTDLRQQLERVR 207

Query: 225 ---------------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
                                          +  + A           +  + +++    
Sbjct: 208 LLWQRDQFDKVPVALPDSVFNKCPRYGFGWPWFFVFAAGKHCTHPRLGHVVRWRLHDKTL 267

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A K G+    + H +R   AT   ++G     +    G   V     YT  + 
Sbjct: 268 QTVTRVAAEKVGLLGVATPHRLRHAYATHLLESGVDIRTVQDMLGHADVATTMIYTHTSV 327

Query: 328 RIRLGIKNSRRIS 340
           R     +    ++
Sbjct: 328 RGAFTRQQVEALA 340


>gi|170769153|ref|ZP_02903606.1| integrase protein [Escherichia albertii TW07627]
 gi|170121805|gb|EDS90736.1| integrase protein [Escherichia albertii TW07627]
          Length = 339

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 100/335 (29%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP V      +G    Y  K  G    +               +       E   +   
Sbjct: 13  LPPRVRS----NG--YSYVWKPEGSTRTIGLGRVRETS------VAKVWQNYELEKAKLH 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R
Sbjct: 61  NIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKR 120

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A   L S+  ++ W   + YV  NPC  V    + T   R     D Q    +
Sbjct: 121 GLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTLKARTVYITDEQYAAIY 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                Q R+A E       R  D      Q + +    I+  KTGT    E        +
Sbjct: 178 AEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAI 237

Query: 246 AMTPI----GKETFFINNDKQKMNATQFSIWFKAKAT----KAGVN--KSAHGVRKFSAT 295
            +         E         K+ A   + W+         KAGV    + H +      
Sbjct: 238 QLARNVSSGTCEYVISTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI------ 291

Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                G +       +     G KT +Q   Y + 
Sbjct: 292 --KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 88/287 (30%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSG 122
           LI  Y      +++    ++   +  +F                GD   ++     I   
Sbjct: 109 LIEIYQSVCESKEALQGKTIGKATVRAFRDSRKNFALFLKTRGNGDSLPKEADKDLIEHY 168

Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
                    +  S+    L  +  + + A+++ Y+  +P     +E P  +   +     
Sbjct: 169 RLFMLRDLGNKESTVSNRLRHLHQVIRKALQERYIREDPFEQIDIETPTYERNALTSDDL 228

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  ++   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 229 HKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQN 288

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            ++       + +           +   +     + F+   +    KAG+      ++H 
Sbjct: 289 RSIVPLLPIAEEILTIVSDGRKEGLLFREFP-TNSHFNRKIRDIIIKAGLPPHTEATSHT 347

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 348 ARHTFATTICLENGLPIETVSKILGHRFISTTELYAK-VSKSKIARE 393


>gi|307591331|ref|YP_003900130.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306986185|gb|ADN18064.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 318

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 33/284 (11%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---------RKHTPSSAIQFL 137
           L  NS      + D++ +   D     +T    +   +          +K++P +    L
Sbjct: 32  LRPNSVPIVRRHLDELAQILTDNQCDAMTLNWGQLRYQHTASLRAVLIQKYSPGTVNHKL 91

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE----------DMQQFKSFWS 187
            ++R + + A + + + +                                     +    
Sbjct: 92  CALRRVLREAKKLKLITLEDYSDAIEIDSVRNHQPSLKGRALSSLEIQVLFTHLLELSTI 151

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245
              +       LL SGLR ++     +    ++     ++  K G   TV LPD    L+
Sbjct: 152 SSFRDAALLAVLLGSGLRRAEVVSLDLADFNHSTGGIEVREGKGGKNRTVYLPDWGTSLV 211

Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
                                    K++M+        + +A+ AG+ + S H +R+   
Sbjct: 212 VQWLNLRGFRPGPLFYAVNKGQRIVKRRMSGQAVLYILQKRASDAGIEQVSPHDLRRTFI 271

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
           +   DAG     +    G         Y +  +   R       
Sbjct: 272 SGLLDAGIDLVTVQKLAGHSDPATTARYDRRGEEAKRRAANTIN 315


>gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 281

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 79/274 (28%), Gaps = 12/274 (4%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAI 134
           +++K       +  +   +       I+         +T + +       +  +  SSA 
Sbjct: 13  DFKKYLINMERSARTIDKYCRDVAAFIQYL--SPGEMVTREKVIEYKGYLQGSYKVSSAN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++   F +    +   ++            E      +       + + +  +  +
Sbjct: 71  SMLAALNCFFHYK-NWDRYRVSQFKVQRHLMGGEERRLTKEEYARLVTTALYLDNQRLAM 129

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK--LLAMTPIGK 252
             E +  +G+R S+     V+ L      I  +     I +                +  
Sbjct: 130 IMETIGNTGIRISELPFITVEALDAGRVEIYNKGKFRTIFLIEKLRCRLRGYCRENGLTS 189

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F+ +    +N +      K    KAG+ +     H +R   A            L  
Sbjct: 190 GPVFVTSGGMAVNRSNIWAEMKRLCIKAGIPEQKVFPHNLRHLFAYTYYGVDKDLVHLAD 249

Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             G  +V+    YT      +   +  +++  ++
Sbjct: 250 ILGHSSVETTRIYTISTGEEQ--QEAMQKMEMII 281


>gi|74311426|ref|YP_309845.1| putative integrase [Shigella sonnei Ss046]
 gi|73854903|gb|AAZ87610.1| putative integrase [Shigella sonnei Ss046]
          Length = 412

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 108/359 (30%), Gaps = 37/359 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E   + +   
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNRAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGALPLEKCELRHWLAC 159

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +   K +P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      E             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRALDEKIYPPYYSALIRLLIVFGCRATELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRK 291
            +     + +            +      +    +  S + +    +      + H +R 
Sbjct: 280 AIFRPIPEAILPFVTKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQAPWTLHDIRH 339

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
              T+  D G   H +      +       Y      D  R  +     R+  + ++D+
Sbjct: 340 TFTTMLNDLGVDPHVVEQLTAHQLPGVQRVYNHSRYLDAKRDALNLWVERLELLQNNDE 398


>gi|319902354|ref|YP_004162082.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417385|gb|ADV44496.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 400

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 20/263 (7%)

Query: 89  VNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             +  ++E+  + + +     DF + +++   +    +S      S      +L +M+ +
Sbjct: 126 EGTAKAYEATLNSMQKHLCGSDFPFARLSPLLVIKYRDSLLEAGISKNTVGFYLHNMKTV 185

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++    +  +++       R + +            +   +      +     R  F F 
Sbjct: 186 YRRGCVELNLSLPSPFRNIRIRTEKTAKRGIPIKLVRTLARLPLPLGTPECLARDVFMFS 245

Query: 200 LYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +Y+ G+   D      +++       K  KT   + + +      LL         +   
Sbjct: 246 IYTRGMSFVDIALLKKENVFQQEIRYKRHKTRQFLEIGINRQIQSLLERYGNTPGEYLFP 305

Query: 259 NDKQKMNATQ--------FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308
             +   +                K  A + G+      H  R   AT++ D G   H + 
Sbjct: 306 LLEGMEDPYSSYKKAYGKIRYALKKVARRVGLEGALRLHAARHCWATMALDNGTPIHTIS 365

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  DR  L
Sbjct: 366 ECLGHSSEKVTKIYLKELDRSVL 388


>gi|319901590|ref|YP_004161318.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319416621|gb|ADV43732.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 400

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 20/263 (7%)

Query: 89  VNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             +  ++E+  + + +     DF + +++   +    +S      S      +L +M+ +
Sbjct: 126 EGTAKAYEATLNSMQKHLCGSDFPFARLSPLLVIKYRDSLLEAGISKNTVGFYLHNMKTV 185

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           ++    +  +++       R + +            +   +      +     R  F F 
Sbjct: 186 YRRGCVELNLSLPSPFRNIRIRTEKTAKRGIPIKLVRTLARLPLPLGTPECLARDVFMFS 245

Query: 200 LYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +Y+ G+   D      +++       K  KT   + + +      LL         +   
Sbjct: 246 IYTRGMSFVDIALLKKENVFQQEIRYKRHKTRQFLEIGINRQIQSLLERYGNTPGEYLFP 305

Query: 259 NDKQKMNATQ--------FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308
             +   +                K  A + G+      H  R   AT++ D G   H + 
Sbjct: 306 LLEGMEDPYSSYKKAYGKIRYALKKVARRVGLEGALRLHAARHCWATMALDNGTPIHTIS 365

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +    + Y K  DR  L
Sbjct: 366 ECLGHSSEKVTKIYLKELDRSVL 388


>gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973]
 gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 29/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------GVESRKHTPS 131
           K     S A ++  +       +     D     IT   I           ++ R    +
Sbjct: 8   KECVGKSRAKSTYQNLLYSDKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATA 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEG 189
           +  ++L  +  L   AV Q  +  NP  + +  K + +    +      +   +    E 
Sbjct: 68  TMNRYLCWLSRLMYRAVSQRIIRCNPFENAKYEKTEQKIRFLQKSDVAKLMALRVIDKEA 127

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLL 245
            Q R  F F  ++GL  +D     + H+Q       +  K ++   +  +       + +
Sbjct: 128 EQARRMFIFSCFTGLAIADMEHLQLGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAI 187

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
                 ++                      + +  S          G+ +    H  R  
Sbjct: 188 INQCKEEQPCMKEMQTVKEKGDDFIFHCTCSRSVMSAKLSIVGKACGIRERLSYHMARHT 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             T+S  AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 248 FGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDRLIRK 295


>gi|256958170|ref|ZP_05562341.1| integrase [Enterococcus faecalis DS5]
 gi|256948666|gb|EEU65298.1| integrase [Enterococcus faecalis DS5]
 gi|315036216|gb|EFT48148.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 372

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 112/377 (29%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +   +  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKT 226
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 227 QKTGTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ------- 268
                                      + L +  I +E           +          
Sbjct: 237 MLVKNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKST 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|210632230|ref|ZP_03297247.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279]
 gi|210159688|gb|EEA90659.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279]
          Length = 373

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 91/354 (25%), Gaps = 39/354 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            R    R  R               A +    ++E +        TL   + E       
Sbjct: 19  VRWDGRRDRRTECHPTKAKAK---KAESRLLMEKERLRGRATARITLAEFVDEVY-WPQK 74

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143
             L  N+R  +E    + I+   G+ +  +I   +I+  V S   T  +A     ++  +
Sbjct: 75  AGLRANTRQGYERDLRRRILPALGNMELDQINKLNIQRMV-SNCPTRKTATNARETLSSV 133

Query: 144 FKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
              AV    + +NP                 G    T     +    +   ++P  A E 
Sbjct: 134 LGCAVEMGMLPVNPASFRYTYPGDGETDPERGGVWLTTLAEHRRLLDFLREARPGSAEER 193

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------------ITVELP 238
           +   GL         +     ++   + + T                        T+ L 
Sbjct: 194 ICVLGLCEGLRKGEVLALRWGDVDLDRRELTVRSTYTVGAGGAHETDPKNRNAFRTIPLR 253

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------HGVRKF 292
               + +     G+           +N        +        + +         +R  
Sbjct: 254 AYAAERMRAWGPGEGPVVAGPGGGLLNPVTAGERMRRMTAGTYPDGTPLPRVTMASLRHS 313

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSRRISSVVD 344
            AT   + G  A +L    G   +     Y   +  D ++  +           
Sbjct: 314 FATACVNEGMEASKLSRIMGHADIKTTMRYYVRQKLDDLKAAVDEMDGCERATG 367


>gi|148359904|ref|YP_001251111.1| hypothetical protein LPC_1833 [Legionella pneumophila str. Corby]
 gi|148281677|gb|ABQ55765.1| hypothetical protein LPC_1833 [Legionella pneumophila str. Corby]
          Length = 374

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 94/336 (27%), Gaps = 27/336 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +  P +     + G+     +K  GRR+       S    A           R+     
Sbjct: 3   RKRTPGLQ----KRGEFWAIDKKVFGRRL-CESTGTSDLEEAEKYLARRLEEIRQATVYG 57

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +         +++            S         ++++  GD     I    ++  VE
Sbjct: 58  VRPKRNFMEAATKFLMENQHK----RSLHDDAGRLRELVKYIGDMPLESIHMGALQPFVE 113

Query: 125 SRKH---TPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            R+    +  +    L  +R +        + +  +         +   + +  +P+   
Sbjct: 114 GRRKDGVSTRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKLLPEHDLRKPYPLN 173

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQK 228
             +Q + F    S       F + +G R  + C               +   I   +  K
Sbjct: 174 WDEQHRLFNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVK 233

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            G    V   D    ++        T   +   + + A   S  ++    KA + +   H
Sbjct: 234 NGEERLVVCNDTARSVVEEERGKHPTHVFSFRGKPL-ARILSTGWRQARIKANLQQVRVH 292

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++         AG +  +     G ++      Y+
Sbjct: 293 DLKHTFGRRLRAAGVSFEDRQDLLGHRSGRITTHYS 328


>gi|69247698|ref|ZP_00604457.1| Phage integrase [Enterococcus faecium DO]
 gi|257883247|ref|ZP_05662900.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257891822|ref|ZP_05671475.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|258616941|ref|ZP_05714711.1| phage integrase family site specific recombinase [Enterococcus
           faecium DO]
 gi|260559279|ref|ZP_05831461.1| phage integrase [Enterococcus faecium C68]
 gi|261207244|ref|ZP_05921932.1| phage integrase [Enterococcus faecium TC 6]
 gi|289567468|ref|ZP_06447824.1| phage integrase [Enterococcus faecium D344SRF]
 gi|293562793|ref|ZP_06677267.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|294618145|ref|ZP_06697737.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|314940445|ref|ZP_07847597.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314942379|ref|ZP_07849225.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314953889|ref|ZP_07856751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314994453|ref|ZP_07859735.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314996983|ref|ZP_07861979.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|68194722|gb|EAN09203.1| Phage integrase [Enterococcus faecium DO]
 gi|257818905|gb|EEV46233.1| phage integrase [Enterococcus faecium 1,231,502]
 gi|257828182|gb|EEV54808.1| phage integrase [Enterococcus faecium 1,231,410]
 gi|260074639|gb|EEW62959.1| phage integrase [Enterococcus faecium C68]
 gi|260078459|gb|EEW66162.1| phage integrase [Enterococcus faecium TC 6]
 gi|289160740|gb|EFD08684.1| phage integrase [Enterococcus faecium D344SRF]
 gi|291595575|gb|EFF26876.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1679]
 gi|291605230|gb|EFF34690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1162]
 gi|313588906|gb|EFR67751.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313591154|gb|EFR69999.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594138|gb|EFR72983.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313598847|gb|EFR77692.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640352|gb|EFS04933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
          Length = 392

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 108/372 (29%), Gaps = 66/372 (17%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+I +YF+     R      +           +      ++ I +   K + +     +Y
Sbjct: 15  GRITWYFQAYRTTR---RGFNSKREAQLAYLEMEKQQRLKKKIVASNDKFSVVGEQWFQY 71

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----------H 128
            +S         +    E     I+R  GD     +T + ++  + + K          +
Sbjct: 72  YRSL--NEQKEITYDKREEQLKIIVRWIGDKKLSDLTPECLQELLFTLKECGVNGTNVGY 129

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----------TEGIRPWTKE 177
             +S    +  + ++FK+  R+  ++ NP  SV  PK +               +  T +
Sbjct: 130 AKNSLQSLIQVLNMIFKYCQRKNLISENPMKSVRMPKYQLTVTDLKEAINNIEDKFLTVD 189

Query: 178 DMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
           +++ F ++    E     + F  L Y+G R S++       +      I   K       
Sbjct: 190 ELRTFLNYGIVHEELPMSVLFHVLFYTGCRVSEALALQPGDIDFKRNEILFYKQTAVKGK 249

Query: 232 ---------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262
                                 + +E     +K L                         
Sbjct: 250 SKDFRIETTKTVSSARRVLVTPLVMEKLQQLIKALGEMRQHYRFIIEETYLFVYLDSSKR 309

Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQ 318
                    +   K    ++G+NK  H    R   A++ A+   +   L    G      
Sbjct: 310 GVPYRREYVNDHVKRCVNRSGINKPFHTHLARHTMASLVAEH-CSWEVLKDRLGHTDQTT 368

Query: 319 AETYTKGADRIR 330
           ++ Y       +
Sbjct: 369 SKIYRHLTSNEK 380


>gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
 gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC
           43184]
          Length = 411

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 94/301 (31%), Gaps = 31/301 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYR--KITTKHIRSG 122
            T++  I E  ++      +  +   +++   ++        G  D    ++T + IR+ 
Sbjct: 112 GTMREGIKE-METLAGIDYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAF 170

Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               K        + ++++   +     A+ +E++  NP    +  ++        T ++
Sbjct: 171 DIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDE 229

Query: 179 MQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R  F F  ++GL  SD      ++L  +       + G +   
Sbjct: 230 LQTVMKKKFTIPRLELVRDVFVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLE 289

Query: 236 ELPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                            + +L                  M   + + + K  A   G+ K
Sbjct: 290 HRRKASSISNIPLLPVPLAILEKYREHPVCIKKGCCLPVMCNQKMNSYLKEIADFCGIKK 349

Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR-RI 339
             + H  R    T           ++    G  +    + Y +  +  ++  + N + R+
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERL 409

Query: 340 S 340
            
Sbjct: 410 E 410


>gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus]
          Length = 168

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
               F    K  A  AG++    S HG+R   AT   + GA    L    G  ++   + 
Sbjct: 89  TRQAFWHLVKRHAQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQI 148

Query: 322 YTKGADRIRLGIKNSRRI 339
           YT       +  ++ +++
Sbjct: 149 YT------LVAREHLQKL 160


>gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium]
          Length = 163

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               G+  +     I  +       +  + +       K    KA      S H +R   
Sbjct: 71  CREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADFIKPASTHTLRHSF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + G     +    G K V     YT   
Sbjct: 131 ATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208]
          Length = 343

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 41/289 (14%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH--------- 128
                L   +   ++  +        D        +ITT+ +R+ +   K+         
Sbjct: 36  KRTEGLRERTLTDYKKMWRYFTEWLNDNYEVTYIDEITTEILRNYINYMKYDKPRYHGHK 95

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      + ++    L +++ LF +  R+E + +NP   V+  ++  +    +T +
Sbjct: 96  YIKSDDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDD 155

Query: 178 DMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KT 229
           +++            G +   A   LL SGLR  +      + +  +   I       K 
Sbjct: 156 EIKAILRQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINADVSKN 215

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVN 283
                V +    +KLL       ++ F  +     +         F+   K  A KAGV 
Sbjct: 216 RKHRLVPISAHCVKLLLQLITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAEKAGVK 275

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               +AH  R   A      G     L    GW  +     Y +   R 
Sbjct: 276 DKKVTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRA 324


>gi|326344401|gb|EGD68154.1| Shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           1125]
          Length = 374

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 105/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 3   QKIKIRKMTISRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 60  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSG 119

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 120 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M PI       +       ++ F   ++    +  +    
Sbjct: 180 TKNGAPRDVPLSRKARSYLQMLPIQLNGNIFSY-----TSSGFKSAWRTALQELKIENLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 235 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|257091155|ref|ZP_05585516.1| predicted protein [Enterococcus faecalis CH188]
 gi|312902620|ref|ZP_07761825.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|256999967|gb|EEU86487.1| predicted protein [Enterococcus faecalis CH188]
 gi|310633958|gb|EFQ17241.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315163287|gb|EFU07304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315578979|gb|EFU91170.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 372

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 112/377 (29%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +   +  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKT 226
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 227 QKTGTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ------- 268
                                      + L +  I +E           +          
Sbjct: 237 MLVKNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKST 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|218549423|ref|YP_002383214.1| integrase [Escherichia fergusonii ATCC 35469]
 gi|218356964|emb|CAQ89596.1| integrase [Escherichia fergusonii ATCC 35469]
          Length = 398

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 47  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 106

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  +  P  
Sbjct: 107 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEERDNPRR 166

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 167 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 226

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 227 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIK 286

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 287 PFLEKAMTTYNDVLFPGEDINKPISIAAANRFVNRIRGGMDIGYWRTHDFRRTLVTRLSE 346

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 347 MNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKL 389


>gi|168698235|ref|ZP_02730512.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246]
          Length = 374

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 99/341 (29%), Gaps = 23/341 (6%)

Query: 20  KIIYYFRKG------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           K+ Y    G       G + RL                     K            T   
Sbjct: 6   KVWYRSDIGWWMITLGGEKTRLVQGPNDDHHRHLAEEKYIELRKLRRTAPEAVGSRT-AD 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129
           +I  +   +     A ++    + Y        G+   R++   HI   ++ +    +  
Sbjct: 65  VIEAFLHHSRVH-FAADTHRLNKYYCQLFAEACGEVLARELKPYHIDRWIDPKVEAEEWG 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++      +   +F WA  ++ +  NP   ++ P       R     D++ +K   + G
Sbjct: 124 ETTVYNARKAAGRVFSWAAERKLLPENPIDGMKNP---KPRPRQRAITDVEFWKMHENAG 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----SIKTQKTGTIITVELPDGFMKLL 245
              +     L  +G R  +        +Q + +        +K+G    + L     ++ 
Sbjct: 181 GPLKDLLLALYLTGARPKEVRELTWDQVQEDRWVLIEHKTGKKSGKPRVIYLTGPLKEIT 240

Query: 246 AMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                   T    N +          +       K  + K   A+  R    T +  AG 
Sbjct: 241 GRLRGNGHTHVFLNTEGLPWTMNALRLQVWRIKRKLELPKDVCAYLCRHGFGTRAILAGV 300

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
               L    G  + +   + Y   AD+ +       RI+ V
Sbjct: 301 DGQTLAELMGHTSQEMISKVYVHLADQHQHLKDAVNRINGV 341


>gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
 gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14]
          Length = 347

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T  +++Q 
Sbjct: 130 HSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVKKEYLTLNEVKQL 189

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 190 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 247

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +         T       + +  +  +   K+   KAG+    + HG R   A I    
Sbjct: 248 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISL 307

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 308 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 345


>gi|240948481|ref|ZP_04752856.1| phage integrase [Actinobacillus minor NM305]
 gi|240297144|gb|EER47710.1| phage integrase [Actinobacillus minor NM305]
          Length = 351

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 94/323 (29%), Gaps = 21/323 (6%)

Query: 14  ERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R  +G         +G+RI R            Y   L       + + + R      +
Sbjct: 5   RRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLKQEMWAEDKLETKR--KYIFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESR 126
             +  Y +SA    L    + + + + +  + K    +   +T + I       +    +
Sbjct: 63  DALLHYVRSAE--ELKD--KATKKRHAEYWLSKFAGRELSSLTAQEIILNIPKKNANTKQ 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + S+  +++ S+  +   A +   +   P +  ++   +      W  +   +     
Sbjct: 119 ALSHSTQNKYVKSLLRVLNIAYKLGMLDSVPYVEKKK---EPPIRVRWITKQQAKQLIDK 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
                 +   +F L +G R ++        +                    ++ L    +
Sbjct: 176 LSSDWMKSICKFALMTGARRTEILTMTWDKIDFERKVAIVTNDVAKSGKARSLLLNQEAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301
           KLL         +                 F     K  + +   H +R   A+    AG
Sbjct: 236 KLLESIRHRHSKYVFVGRNGNPLQDINRKAFNLSTKKCLLSDFHFHDLRHTWASWHVRAG 295

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                L    GW+T++  + Y  
Sbjct: 296 TPLFTLKELGGWETLEMVKKYAH 318


>gi|327412982|emb|CAX68000.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. VII]
          Length = 383

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 97/301 (32%), Gaps = 24/301 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               R K  +L   + +Y  +A         +  +     Q           +ITT  I 
Sbjct: 2   ARPQRIKKMSLSKALDKYYATASVHKRGHR-QEFYRVNVIQ-RHPLARKAMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           S  + R            + ++    L  +  L+   +V       NP   V +PK    
Sbjct: 60  SYRDDRLAQMNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + +   + F ++       F   + + +R  +      +H+        +  
Sbjct: 120 RDRRLTSHEERCLSRYFQNQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPL 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G+   V L     +LL    +       N       ++ F   ++    +  + +  
Sbjct: 180 TKNGSSRDVPLSRKARQLLQGMTVALTGSVFNY-----TSSGFKSAWRVALQRLSIIDLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   RR +  +
Sbjct: 235 FHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDACRRQTQKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
 gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2]
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 262 QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      K+ + KA  G + S H +R   AT    AG     +    G   V   
Sbjct: 242 HHIDESGLQKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTT 301

Query: 320 ETYTKGADRIRLGIK 334
           + YT    +    ++
Sbjct: 302 QIYTHVLKQGGNAVQ 316


>gi|294054714|ref|YP_003548372.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614047|gb|ADE54202.1| integrase family protein [Coraliomargarita akajimensis DSM 45221]
          Length = 387

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 96/347 (27%), Gaps = 44/347 (12%)

Query: 29  HGRRIRLPYPHESTFIPAYM------SALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
             + +RL    E     A         A    +   E  +    +  +++   + +    
Sbjct: 34  RTKALRLAMAWEDAARKARHGLLTENQARKVISEIVEVTSGEELEVFSVEDWFTLWLGDK 93

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVE---SRKHTPSSAIQF 136
                A  +   + +  +  +    +        +  K I+   +   +   +P +    
Sbjct: 94  KDVR-APRTHERYNAIVNAFLDSLHERKKVSIGYLNAKDIKKFRDLQLAAGKSPRTCNLE 152

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + ++R     A RQ  V  N   ++E    +      +T ED+++     S       A 
Sbjct: 153 VKTLRAALNAARRQGLVTTNAAEALEMLPTEKSKKAVFTAEDIEKILEVASAD--WSGAT 210

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
               ++G R  D      + +      I  +  + + +    ++     K L    +   
Sbjct: 211 LVGFFTGARLGDVANLTWESVDLSAKLINFVPEKTSHSEHPTKVVIPIAKTLLDYLMTLP 270

Query: 254 TFFINNDKQKMN--------ATQFSIWFKAKATKAGV-----------------NKSAHG 288
           +    N     +            S  F      A +                   S H 
Sbjct: 271 SSDDPNAYLFPSLAGRNTGGHNGLSRQFLHILESAKLVSAARVKKKGEKGRIQSALSFHS 330

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIK 334
           +R    +  A+ G          G  + +    YT    DR+R  I 
Sbjct: 331 LRHSCTSAMANGGIPVEVRQLITGHASAEMNAIYTHHELDRLRKAID 377


>gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469]
 gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469]
          Length = 328

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 82/261 (31%), Gaps = 14/261 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130
           +  +  +      +  +   + S     +       +R++TT+ +R       + +  + 
Sbjct: 54  LDAFYAAKRLEGCSERTISYYASVLHHYMVNI-TTGFRQVTTEEVRSYLIEYGQRKGVSK 112

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +       +  LF W   ++Y+  +P   +++ +         T ++++  +   +   
Sbjct: 113 ITVDNVRRVISSLFSWLEAEDYILKSPVRRIKKIRSPRNIKPVITDDELETMRDGCTC-V 171

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +     + L  SG+R  +  R   + +         +        V         L    
Sbjct: 172 RDLALVDLLTSSGMRVGELVRLNREDIDFEGRQCVVRGKGDKERRVYFDARTKVHLHEYL 231

Query: 250 IGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302
             +           +  K+++  +   +  +      G+ +   H  R+  AT + D G 
Sbjct: 232 NSRHDENPALFISLDGTKKRLEISGVELRLRMLGRSLGLPRVHPHKFRRTMATRAIDKGM 291

Query: 303 TAHELMATYGWKTVDQAETYT 323
              ++    G   +D    Y 
Sbjct: 292 PIEQVQVLLGHSKIDTTLCYA 312


>gi|254494394|ref|ZP_05107565.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|226513434|gb|EEH62779.1| predicted protein [Neisseria gonorrhoeae 1291]
          Length = 384

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 95/366 (25%), Gaps = 54/366 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           +TK R   G+ +Y  +   G++    +    TF    ++   G   + E    P      
Sbjct: 4   ITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKR 63

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
            + K  TL   + +Y         +  +          ++    G     K+        
Sbjct: 64  GKVKMMTLSEAMRKYLNETLGAGRSKKT------GLRFLMEFPIGGIGIDKLKRSDFAEH 117

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP--------------- 157
           V  R+             S+A+Q L  +R + K A     + I                 
Sbjct: 118 VMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNM 177

Query: 158 -CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              S  R +  T            +            L     +Y+  R  + CR     
Sbjct: 178 VAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDD 237

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQK 263
              N  +   +           +    +L M                      I +    
Sbjct: 238 WHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVP 297

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N    S  +       G+ +   H +R  +AT  A+ G T  ++         +  + Y
Sbjct: 298 CNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRY 357

Query: 323 TKGADR 328
                R
Sbjct: 358 VSVRKR 363


>gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
 gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787]
          Length = 420

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 101/384 (26%), Gaps = 61/384 (15%)

Query: 18  HGKIIYYFRKGHGRRI-----RLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK-PTT 70
            G+  Y +    G+R      RL    +      A +S        +            T
Sbjct: 22  SGRYRYKYTDSLGKRKILYSWRLTEADKMPEGKRADLSLREKERKVQSLQMQGITGSNIT 81

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI---TTKHIRSGVESR 126
           +  L+  Y        +  N+  +++   + +   +        +     K     ++  
Sbjct: 82  VLELVERYLSLK--TGVKHNTLANYKFVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRD 139

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SS       +R  F+ AV  + +                ++  +  + ED  +F  
Sbjct: 140 GRGYSSIHSIRGVLRPAFQMAVDDDLILKNPFGFELGTVLVNDSQKRQAVSPEDETKFLD 199

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCR-------AGVQHLQNNIFSIKTQKTGTIIT 234
           F            AF  L  +GLR S+ C             +  N    +T++   II 
Sbjct: 200 FVKNDPHYNQYYDAFYILFKTGLRISEFCGLTVKDLDFKEDIINVNHQLQRTREMKYIIV 259

Query: 235 VELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +LL M                        + +       K      ++ ++ 
Sbjct: 260 STKTTSGTRLLPMEADVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEK 319

Query: 276 KATKAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               A               + H  R    T  A++G     L    G   V      YT
Sbjct: 320 YMQHAREKYNRENLLQLPPVTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYT 379

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
                        + ++ + ++ D
Sbjct: 380 HTGY-----DDAKKELARLKEARD 398


>gi|184154707|ref|YP_001843047.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226051|dbj|BAG26567.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 367

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 102/361 (28%), Gaps = 33/361 (9%)

Query: 15  RTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R  +            +R +    + +    A  +A       +E + +P     TL 
Sbjct: 8   TKRGSRYQARVNWYDNQDKRHQKSAGYFNRRKDAVATAERVRDELQEQL-NPDLTEITLA 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                + +      +   ++  ++   + + +       + +     ++ +      H  
Sbjct: 67  DYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFINWYGANHAR 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKS 184
            S  +   +++ +  +A+  E +  +   +++    K    +        T   M   K+
Sbjct: 127 DSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVISNKDRERKVEYLNQKETAVLMDAVKA 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
                   +      L +G+R S+        L     +I   K+               
Sbjct: 187 DLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEKAFKPTKTLS 246

Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285
           +   + +    +K+LA          F+     Q       +   +    +   A     
Sbjct: 247 SRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGNALNKALRFIMHQQAIAKQGFH 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN--SRRISSV 342
            H +R          G   + +    G   +    +TY+   D  +    +   +++  +
Sbjct: 307 FHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDDLIVKKLQEL 366

Query: 343 V 343
           +
Sbjct: 367 I 367


>gi|82544593|ref|YP_408540.1| CP4-57-type integrase [Shigella boydii Sb227]
 gi|81246004|gb|ABB66712.1| putative CP4-57-type integrase [Shigella boydii Sb227]
 gi|320184706|gb|EFW59499.1| Prophage CP4-57 integrase [Shigella flexneri CDC 796-83]
          Length = 413

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 98/343 (28%), Gaps = 32/343 (9%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTGST-----PKR 58
               G  ++   Y+R    +RI L +                 Y + ++  T      K+
Sbjct: 35  VKPSGSKLWRFSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKK 94

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           +     R++  T + + + + +     +LA N+           +    G+     +T +
Sbjct: 95  KREAEARRQGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTAR 154

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                +   K   +  +  + L  +  +  +A     +  NP ++V +           T
Sbjct: 155 RFVEVLTPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPT 214

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-T 229
                     Q  S  +   Q RL  E+ L +  R +++       +  +          
Sbjct: 215 IRPEQLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGR 274

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
             +    +     + +A+    K      N                 A  A         
Sbjct: 275 MKMRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV 334

Query: 287 ---HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
              HG+R   +T + + G     + A       ++    Y + 
Sbjct: 335 LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|257077443|ref|ZP_05571804.1| integrase [Enterococcus faecalis JH1]
 gi|294779636|ref|ZP_06745027.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
 gi|256985473|gb|EEU72775.1| integrase [Enterococcus faecalis JH1]
 gi|294453293|gb|EFG21704.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis PC1.1]
          Length = 372

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 115/377 (30%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +   +  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQN---------- 219
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +            
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---- 269
                   F I T KT + I     D     L      +++    N    ++        
Sbjct: 237 MLVKNKREFRITTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFFIDGGTLAKST 296

Query: 270 -SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|254449011|ref|ZP_05062465.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium HTCC5015]
 gi|198261405|gb|EDY85696.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium HTCC5015]
          Length = 358

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 92/345 (26%), Gaps = 31/345 (8%)

Query: 11  VTKERTRHG-KIIYYFRKGHGRRIRLPYPHESTFI---PAYMSALTGSTPKREYINSPRK 66
           +T  +T+ G +     R              +        +         K   + +   
Sbjct: 4   ITPRKTKKGIRYTAQIRINRKGLRPYSESFSADKRSIVKEWAIQREAELMKPGGLAAATA 63

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           +  ++  +++ Y +          +       +   +       D D   +TT  +   V
Sbjct: 64  ERPSVGNVLTYYLEDYQDLMAFGRSK--LADLKKLINH---DISDKDATTLTTAEVLQHV 118

Query: 124 ESRKHT---PSSAIQFLTSMRVLF-------KWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             R+ +   P++    L  +   F          ++   +     ++ +         R 
Sbjct: 119 RDRRASGAGPATVKNDLIWLSTAFQSVSAARNLTLKLTSIKEAQVIAKKERLIAASKKRD 178

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              E ++  +   S  S+ + A   +       L+S  R  + CR     L      +  
Sbjct: 179 RRPELLELDQLLESFSSRDKRATIPMVPITLFALFSTRRQDEICRIQWSDLDRANSRVLV 238

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
           +              +       I  +   I+      N+      F       G+ +  
Sbjct: 239 RDMKHPREKTDTWCALPA-RAMAIIDQMPQIDERIFPYNSKSVGSAFTRTCKILGIEDLH 297

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            H +R  + T   + G     +    G K+    + YT       
Sbjct: 298 FHDLRHEAITHQFEIGQQIPVVAKISGHKSWASLQRYTHLLQLEH 342


>gi|189183847|ref|YP_001937632.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
 gi|189180618|dbj|BAG40398.1| putative integrase [Orientia tsutsugamushi str. Ikeda]
          Length = 348

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 16/291 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        K       +    T K L  +Y +       A    I ++    +I 
Sbjct: 32  REVKRQQQMEENEKCIKERERKANDITFKELCYKYIEE-----YAKIYIIHWQKDAARIY 86

Query: 104 ---RKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              ++       ++    I+            ++A   L ++R +F  A +   +  NP 
Sbjct: 87  NYGKQLFLKKINEVKRNDIQQIFNDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPT 146

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL 217
           L +E+ K +    R    +  +       E +   R      LY+G R S+       ++
Sbjct: 147 LGIEQHKLQARERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNI 206

Query: 218 QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWF 273
                 + I   K G    + L D  M++L       E+ ++       +    + +  +
Sbjct: 207 DFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSW 266

Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                KAG+     H +R+  A+   D GA+   +       + +   +YT
Sbjct: 267 HRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT 317


>gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 405

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 87/284 (30%), Gaps = 28/284 (9%)

Query: 73  WLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIR 120
            L+  ++              + N+   + + F  +           D    ++    + 
Sbjct: 109 QLLELFQDHNSQMEQLLNKDFSPNTLQRYLAAFKHLGNFIQVQYNCSDIYLNELDHAFVT 168

Query: 121 SGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              +  K       +SA++ + +++ +   A+  +Y+  +P  +      K       T+
Sbjct: 169 RFEQYLKTVISCQHNSAMKHVKALKKVVNLALANDYIKKDPFANY-TISIKEVKRDCLTQ 227

Query: 177 EDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            ++ Q  S      +    R  F F  Y+GL  +D      +H+Q  +   K        
Sbjct: 228 AELDQIASKEISIERLDVIRDLFLFQCYTGLAFADLASLTPEHIQIGVDRHKWLFVERTK 287

Query: 234 TVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           T       +     ++++      E    N      +  + + + K      G+ K+ H 
Sbjct: 288 TNTDCRIPLFPITEEIVSKYKDHPERIIKNRLLPVPSNQKMNAYLKELGAICGITKNIHT 347

Query: 289 --VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              R   AT            +    G K +   + Y K  +  
Sbjct: 348 HLARHTYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAKVLETK 391


>gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4]
 gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4]
          Length = 419

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 83/350 (23%), Gaps = 45/350 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYM-----SALTGSTPKREYINSPRKKPTTLKWLIS 76
            Y      GRR+R     E     A        A+          +   +  T +   I 
Sbjct: 63  YYIEWWVSGRRLREATTREDAIECARHKSVELRAIRAGLIASPEPSPVAEAKTPIGDAID 122

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRKHTPSS 132
            Y K          + +++    D ++R S    Y +           +    +     +
Sbjct: 123 NYLKYVKMQR-KKRTFLTYRYTLDVLLRASYKRKYAEDATRQDAIDFMTYCYEQGLGART 181

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188
               + ++  LFK   R++ +      S     R        T       +         
Sbjct: 182 VYDKVVTVLQLFKRHGREKLLEKGDWPSYVDTIRPIYEPEELTAMFKVATEDEADMLKFI 241

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G + +                    +  +        T K      V LP   ++ L
Sbjct: 242 LGSGFRDQEIRYVEYL-----DLDSNHDLVRVTAKKEWDFTPKNWEERVVPLPHVLVERL 296

Query: 246 AMTPIGKETFFINNDKQKMNATQ---FSIWFKAKATKAGVNKS----------------- 285
                 K     +       +       +  K  A +AG+N                   
Sbjct: 297 KKRKERKNARPHDLIFGNTRSNPDSEMDMVVKRVAERAGLNCGRCVTEHGNKCEEGPYCM 356

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H  R   AT     G     + +  G + ++    Y KG       
Sbjct: 357 NFFLHKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVYLKGIRSKDAA 406


>gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1]
 gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1]
          Length = 112

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           +       + L +    ++  F+NN    + +       +    +AG+      H +R  
Sbjct: 1   MIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHS 60

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325
            AT   + GA    +    G  ++   + YT  
Sbjct: 61  FATAMLNNGADLRSVQELLGHSSLSATQIYTHV 93


>gi|261821183|ref|YP_003259289.1| integrase [Pectobacterium wasabiae WPP163]
 gi|261605196|gb|ACX87682.1| integrase family protein [Pectobacterium wasabiae WPP163]
          Length = 416

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/349 (11%), Positives = 93/349 (26%), Gaps = 32/349 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSP 64
             +       G   + FR       +R  L +       +         +    E    P
Sbjct: 29  GGLLLFVKPSGTKTWRFRYYQPQTKKRTTLTFGSYPAISLADARQMREAAKALLEKSIDP 88

Query: 65  RKKPT------------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
           +                T   + +++ +      LA N+           +    G    
Sbjct: 89  QFHQQQQREQEQAINLNTFAKVSADWYELKKSQPLAENTIKDIWRSLEKYVFPFIGTLPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++T +H  + +E  + +    +  +    +  +  +AV    +  NP   + +  +   
Sbjct: 149 TQLTARHFITALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPV 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T          +  S  S   Q RL  E+ L +  R +++       +     + 
Sbjct: 209 KTHMPTIRPEALPGLMKTLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLTDNTW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATK 279
                   +    +     + LA+    K            +             A   +
Sbjct: 269 TIPAGRMKMRRDHIIPLPPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + + G +   + A       ++    Y + 
Sbjct: 329 MGYKGVLVSHGLRAIFSTAANEEGFSPDVIEAALAHVDTNEVRRAYNRS 377


>gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 335

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 100/319 (31%), Gaps = 27/319 (8%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +    +T +  ++++  +K          +  S    +    +    +       R   +
Sbjct: 14  AKRRKNTLEPVFVSAIEEKVPEFTDAEKLFYASEKSKNRLKRTIQWHQENIQAFKRAMFE 73

Query: 109 ----FDYRKITTKHIRSG-----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                +   IT + IR+      +E   + P +    + +++  F + V + Y+A NP  
Sbjct: 74  QGIELNLNNITYRTIRNNLVLYAIEKWGNQPQTVNMRIRTLKQFFDFLVSEGYLAENPAA 133

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215
            VE+ K     I    K+ +++  +   + +    +       LL +GLR S+     + 
Sbjct: 134 RVEKLKTANTLIVALNKDQVRRLLAVPDKDTLTGFRDYTIMLLLLDTGLRLSEISGLRIS 193

Query: 216 HLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIG------KETFFINNDKQKMNATQ 268
            L     F     K     TV L     K L             +  FI  D   +    
Sbjct: 194 DLHFTENFIKVMGKGAKERTVPLQGKLKKTLREYLQHRGKEPDHDFVFITIDNNPIKNRT 253

Query: 269 FSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
                   + KAG   +  S H  R   A +    G  A  L    G  + +    Y K 
Sbjct: 254 IQDRLDIISKKAGVTEIRTSPHTWRHTFARMYILNGGDAFSLKTILGHNSWEMVHRYVKI 313

Query: 325 ---GADRIRLGIKNSRRIS 340
                +   L     + + 
Sbjct: 314 FGTEVNTQHLKASPLKNLD 332


>gi|209407372|emb|CAQ81988.1| putative prophage integrase [Enterobacteria phage 2851]
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  K  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFDQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVLFPGEDINKPISIAAANRFLNRIRGGMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 341 MNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKL 383


>gi|120403496|ref|YP_953325.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119956314|gb|ABM13319.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 385

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 93/358 (25%), Gaps = 42/358 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP----TTLKW 73
            G+    +     RR + P    +        AL  +    +    P   P    TT   
Sbjct: 23  SGRYRAMYYGPDRRRYKAPTTFRAKADARGWLALRQAEIISKAWTPPEAAPKITRTTFAD 82

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPS 131
               + K      L  ++R  +E      +I   G      IT   +R    +    TP+
Sbjct: 83  YARNWIK---QRDLKQHTREHYEVLLERHLISPFGSLPLSSITVDDVRGWYATFATETPT 139

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
                   +R +   A     ++ NPCL   +    + K        + +    +     
Sbjct: 140 LRSHTYGLLRTILGTAASDGKISSNPCLIRGAGTTKRVKKIRPATLPEIEKITTEMPEQY 199

Query: 189 GSQPRLAFEFLLY-----------------------SGLRCSDSCRAGVQHLQNNIFSIK 225
            +   LA    L                        +           V  + +      
Sbjct: 200 QAMILLAAWCALRFGELTELRRKDIVLTTTVDLEGETVHMGVIRVERAVVRVDDGYLVTT 259

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK 279
            +       V +P   + ++                F     + +        F      
Sbjct: 260 PKSDAGTRDVAIPPHLVPVIHDHLAVHVDGGPDALLFPAAHGRHLAPATLYRQFYKARVA 319

Query: 280 AG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           A   +   H +R   A ++A  GAT  ELMA  G  T   A  Y   A      I  +
Sbjct: 320 ADRPDLRFHDLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDQAIAAA 377


>gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
 gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2]
          Length = 167

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 262 QKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ +      K+ + KA  G + S H +R   AT    AG     +    G   V   
Sbjct: 86  HHIDESGLQKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTT 145

Query: 320 ETYTKGADRIRLGIK 334
           + YT    +    ++
Sbjct: 146 QIYTHVLKQGGNAVQ 160


>gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC]
 gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC]
          Length = 323

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 24/264 (9%)

Query: 85  GSLAVNSRISFESYFDQIIR-KSGDFD--YRKITTKHIRSGVESRKHTPSS---AIQFLT 138
             LA  SR +       +++ K  +      K+  + +R  + S+     +   A    +
Sbjct: 38  RGLAARSRQNNLRIVGWLLQQKFAECPVEIAKLRPEDVRRFLASQLDAHRTTSNASHLAS 97

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQ----P 192
           S+R  F++              +  P         R    +++++  ++++   +     
Sbjct: 98  SLRSYFRYRTTCGDRVDALTAVISSPVNWRLATIPRALKPDEVERLLNYFTANLRLPKRD 157

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLA 246
                  L  GLR  +     +  +     ++  + T ++    +P            L 
Sbjct: 158 YAIVRCALDMGLRAGEIAHLMISDIDWRAGTVMLRGTKSLRQDIMPLPMKTGQALADYLQ 217

Query: 247 MTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300
                     I   +       + +       K    + G+  S AH +R   A    + 
Sbjct: 218 HERPATRNPAIFVRQKEGRDCPITSMAIQKVIKHACCRVGLPHSSAHALRHTLACRLVEN 277

Query: 301 GATAHELMATYGWKTVDQAETYTK 324
           G++  E+      ++++    Y K
Sbjct: 278 GSSLKEVADLLRHRSLNTTLIYAK 301


>gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 319

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 74/270 (27%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R +++            +G  ++R +T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGADEFRAVTRAHVLAWRAQLEQRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R                +           +G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIDSNEGKTPALADHQAKALLDAPPAESLKGLRDRAV 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              LLY GLR  ++ +     LQ            K G +  + L     + +       
Sbjct: 159 LAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGGKLRWLPLHPVAAERIYAYIEQN 218

Query: 253 ETFFINNDKQKMN-----------ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                       +           A          A  AG+       HG+R  +AT + 
Sbjct: 219 MERGAGYGSLFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKVEGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308


>gi|54298254|ref|YP_124623.1| hypothetical protein lpp2312 [Legionella pneumophila str. Paris]
 gi|53752039|emb|CAH13465.1| hypothetical protein lpp2312 [Legionella pneumophila str. Paris]
          Length = 364

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 89/336 (26%), Gaps = 27/336 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +  P + K         +   K    R        S    A           R+     
Sbjct: 3   RKRTPGLQKR-----GEFWVIDKKVFGRRLCESTGTSDLEEAEKYLARRLEEIRQATVYG 57

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
            +   +     +++            S         ++++  GD     I    ++  VE
Sbjct: 58  VRPKRSFMEAATKFLMENQHK----RSLHDDAGRLRELVKYIGDMPLESIHMGALQPFVE 113

Query: 125 SRKH---TPSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            R+    +  +    L  +R +        + +  +         +   + +  +P+   
Sbjct: 114 GRRKDGVSTRTINHGLQVVRRILNLAASEWMDEYGLTWIINAPKIKLLPEHDLRKPYPLN 173

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQK 228
             +Q + F    S       F + +G R  + C               +   I   +  K
Sbjct: 174 WDEQHRLFNELPSHLEKMALFAVNTGCRDQEICELRWDWEIKIPELSHIMVFIIPAELVK 233

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287
            G    V   D    ++        T   +   + + A   S  ++    K  + +   H
Sbjct: 234 NGEERLVVCNDTARSVVEEERGKHPTHVFSFRGKPL-ARILSTGWRQARIKPNLQQVRVH 292

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            ++         AG +  +     G ++      Y+
Sbjct: 293 DLKHTFGRRLRAAGVSFEDRQDLLGHRSGRITTHYS 328


>gi|315033105|gb|EFT45037.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0017]
          Length = 393

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 108/388 (27%), Gaps = 62/388 (15%)

Query: 16  TRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP- 68
           T+ G+  +            G++I +   + +T   A +              +      
Sbjct: 8   TKKGQKYWKVTAYLGVDYLTGKQINVTIRNCNTKKEAQLKLNQKKLDFDNGNLANEHTRL 67

Query: 69  TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
           TT + +   +       ++  ++   +       I+   G     ++T K ++  V    
Sbjct: 68  TTFEEVYYMWLDEYK-KTVRESTFIATERRMKKHILPTFGKMRLERLTVKIVQKSVNEWY 126

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                    L+    +  +AV  E +  NP   + +P    +  +   ++   + +    
Sbjct: 127 KKNEMGKVLLSYASRVCDYAVGLEIIDSNPFKKITKPSSLKKVEKNTKRKFYTKDELEHF 186

Query: 188 EGS--------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----- 222
             +                         F  L ++G+R  ++       +          
Sbjct: 187 LNTADSIANQAKEESLVLKYYADLDCAIFRLLSFTGIRVGEALALNWNDIDIKEQVVNIN 246

Query: 223 -----------SIKTQKTGTIITVELPDGFMKLLAMTP------------IGKETFFINN 259
                          +   +I  +   +    +L                   +  F   
Sbjct: 247 KTTAISTNGLTINDPKTPNSIRKISFDNKTAYILKKWKLRQREALMKKGGFKTQLIFTKI 306

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVD 317
           D     +       K  A KA ++    HG R   AT+  ++    +  +    G  ++ 
Sbjct: 307 DGTMFRSQDIYQRSKRLAEKANLHSIGCHGFRHTHATLLFESDNVRSKIIQERLGHSSLQ 366

Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVD 344
               TYT  +D   +  + +   SS V+
Sbjct: 367 ITMDTYTHVSDE--VTKEATDAFSSYVN 392


>gi|168751662|ref|ZP_02776684.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757554|ref|ZP_02782561.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769761|ref|ZP_02794768.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775543|ref|ZP_02800550.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782292|ref|ZP_02807299.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788677|ref|ZP_02813684.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168799109|ref|ZP_02824116.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195939351|ref|ZP_03084733.1| putative integrase of prophage [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809340|ref|ZP_03251677.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817217|ref|ZP_03258309.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820383|ref|ZP_03260703.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400128|ref|YP_002271253.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209447127|ref|YP_002274212.1| integrase [Stx2-converting phage 1717]
 gi|254793792|ref|YP_003078629.1| prophage integrase [Escherichia coli O157:H7 str. TW14359]
 gi|261225145|ref|ZP_05939426.1| prophage integrase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257511|ref|ZP_05950044.1| prophage integrase [Escherichia coli O157:H7 str. FRIK966]
 gi|187768989|gb|EDU32833.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014334|gb|EDU52456.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000169|gb|EDU69155.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355504|gb|EDU73923.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361279|gb|EDU79698.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371535|gb|EDU89951.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189378428|gb|EDU96844.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208729141|gb|EDZ78742.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730836|gb|EDZ79526.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740506|gb|EDZ88188.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161528|gb|ACI38961.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209361106|gb|ACI43099.1| integrase [Escherichia coli O157:H7]
 gi|254593192|gb|ACT72553.1| prophage integrase [Escherichia coli O157:H7 str. TW14359]
 gi|320191825|gb|EFW66473.1| integrase-like protein [Escherichia coli O157:H7 str. EC1212]
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  K  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFDQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVLFPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 341 MNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKL 383


>gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42]
 gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     A +AG++K  + H +R   AT    AG     +    G K V     YT 
Sbjct: 257 QSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTH 316

Query: 325 GADR 328
             ++
Sbjct: 317 VLNK 320


>gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A]
 gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 93/287 (32%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSG 122
           L+  Y      ++     +L+  +  +F+      +R        +   + +    I S 
Sbjct: 69  LVELYQSLSESKEELKGHTLSKATVRAFKDSQKSFVRFLRASNNEECLPQSVDKDLIESY 128

Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176
                    +  SS    L  +  + + A++++Y+       + +E P  +   +     
Sbjct: 129 RLFMLRDLGNKESSVSNRLRHLHQVIRKALQEQYIREDPFDFIDIETPTYERNALTSDEL 188

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  F+   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 189 HKLLSFRPHKSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSDGRRYISLCRTKTQN 248

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
             +       + +     G+ T  +   +     + F+   +    KAG+      ++H 
Sbjct: 249 RCIIPLLPIAEEILSIVSGERTEGLFFREFP-TNSHFNRKIREIILKAGLPPHTEATSHT 307

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 308 ARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAK-VSKSKIARE 353


>gi|148912793|ref|YP_001293372.1| Integrase [Pseudomonas phage F10]
          Length = 349

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 97/356 (27%), Gaps = 48/356 (13%)

Query: 1   MTPSLR----LPPFVTKERT--RHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSA 50
           M P       LPP + K     + GK+   YY+  R   GRR  +P   +        + 
Sbjct: 1   MRPRSNKNRGLPPRMIKRTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWAK 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L           +      T+  L+  + +       A  ++  +     Q++    +  
Sbjct: 61  LER--------KAVPPTTRTVGDLLRRFERDVVPTK-APKTQKEYSKMIRQLLGAFDEAP 111

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              IT   I    ++R      A + +T +   F + + +E+   +        K+  E 
Sbjct: 112 VEDITPSTIAQYRDARTAKVR-ANREITLLS--FAYNMAREWGITSMENPCRGVKKNKEQ 168

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------FSI 224
            R     D      +       R+  +    +G R +D  +     +  +        + 
Sbjct: 169 PRDVYVTDEVWKALYEKAPDDLRVTMDLAYLTGQRPADVRKLRKSDVSGDYLLVGQNKTS 228

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--- 281
           +  +               L+            N   Q M        F      A    
Sbjct: 229 RKLRIRLRRADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFDTARKAAADEA 288

Query: 282 ------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
                       +      +R  +A+       +  +     G  T +  +  Y +
Sbjct: 289 IKAGDQDLAREIMQFQFRDIRPKAASDI----ESLADASDLLGHTTQEITKRVYRR 340


>gi|237707153|ref|ZP_04537634.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226898363|gb|EEH84622.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294492285|gb|ADE91041.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|307627709|gb|ADN72013.1| putative integrase [Escherichia coli UM146]
 gi|323958170|gb|EGB53879.1| phage integrase [Escherichia coli H263]
          Length = 412

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 110/361 (30%), Gaps = 41/361 (11%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E   + +   
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNRAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGALPLEKCELRHWLAC 159

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +   K +P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      +             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +     + +            +        K + +  ++      +  +A    + H +
Sbjct: 280 AIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--PWTLHDI 337

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSD 346
           R    TI  D G   H +      +       Y      D  R  +     R+  + ++D
Sbjct: 338 RHTFTTILNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLELLQNND 397

Query: 347 D 347
           +
Sbjct: 398 E 398


>gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 280

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 41/269 (15%)

Query: 90  NSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
           N+  S+ S   Q+             +   +I+         +K+  SS  + +++M+  
Sbjct: 12  NTLESYRSDLHQLEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSISRKISAMKNF 71

Query: 144 FKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189
           +K       +  NP  +     + PK      +  + E++        +           
Sbjct: 72  YKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMDAVRKSASESNKEISS 131

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------NIFSIKTQKTGTIITVELPDGFM 242
            +     + L  SG+R S+     +  + +         + I   K+G    +   +  +
Sbjct: 132 KRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQAL 191

Query: 243 K-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288
           +           LL+        F  +   + +   + +   K  A K  ++    S H 
Sbjct: 192 QSLRNYLSVRDNLLSNRKESDWLFPGDKPNKPITRQRVAQLMKELARKCNIDENKISPHV 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVD 317
           +R   AT   D+GA    +    G   + 
Sbjct: 252 IRHSFATHLLDSGANIVLIQKVLGHTNLS 280


>gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC
           13177]
          Length = 235

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 15/221 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
           S+  + L  +     +   +                  E    W                
Sbjct: 12  STVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEATALILAAGAV 71

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFM 242
           +     R      L +G R ++        +       +      K G    V L  G +
Sbjct: 72  ARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGAL 131

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATI 296
             L             ++    +++          F A   +AG+     H +R   A+ 
Sbjct: 132 LALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASW 191

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336
               G + + +    G  ++  AE Y    +D  R  ++  
Sbjct: 192 LVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKL 232


>gi|317055894|ref|YP_004104361.1| integrase family protein [Ruminococcus albus 7]
 gi|315448163|gb|ADU21727.1| integrase family protein [Ruminococcus albus 7]
          Length = 362

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 114/357 (31%), Gaps = 39/357 (10%)

Query: 10  FVTKERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +T  + + G+ +  F        + +  Y +  T+  A    + G      Y++    K
Sbjct: 5   GITITKRKDGRYVGKFIAEYADNGKAQYHYVYGKTYEEAENKVMIGREITTRYLSGRYIK 64

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126
              +  +  E+  +     +  ++  ++ + F   I+ + GD     +T   I + +  +
Sbjct: 65  ---VGKVYREWLNAV-VNRVKESTLANYRNKFEKHILLEFGDIPCADLTAGRINAFINKK 120

Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                SA       T  + + K+A  +         +V  PK +   +   +  + ++  
Sbjct: 121 LADGLSASYVRDIFTVFKTMLKYAQEEYG-FRLSLKNVVLPKAERNQVEKISDAEQKKLV 179

Query: 184 SFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
           S+               L+ GLR  + C    + +      +  ++T             
Sbjct: 180 SYLKANMSLTAFGILLSLFMGLRIGELCGLKWEDVDFRNKILHIRRTVQRISSANGNRKT 239

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                          + +PD  M+   M     + F ++   + +        +K     
Sbjct: 240 KIVISAPKSATSFREIAIPDMLMEYFEMFRDEADHFILSGTDKPVEPRTMQYRYKKILHT 299

Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK--GADRIRLG 332
           A V + + H +R   AT SA+ G     L A  G  +V      Y         RL 
Sbjct: 300 ADVEDHNYHKLRHTFATNSAEKGFNVKALSAVLGHSSVPLTLNRYIHPDRTYERRLM 356


>gi|332187750|ref|ZP_08389485.1| phage integrase family protein [Sphingomonas sp. S17]
 gi|332012316|gb|EGI54386.1| phage integrase family protein [Sphingomonas sp. S17]
          Length = 422

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 104/358 (29%), Gaps = 38/358 (10%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           F+ + R   G      R    R   L            ++A+ G     + +   RK   
Sbjct: 44  FIVQYRNAEGIKR---RINIARYGVLTVDQARDQAKLKLAAVIGGEDPADEVRQARKG-M 99

Query: 70  TLKWLISEYRKSAHWGSL--------AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            ++ +   Y   A  G++          +S    ES     I    G    + +T   + 
Sbjct: 100 AVEEMCDWYLTEARAGNILGRKNLPIKKSSLDMDESRIKTHIKPLLGKRIVKHLTIADVE 159

Query: 121 SGV----ESRKHTPSSAI-------------QFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                  + +   P S               + + +++ +   A  +  +  +P    ++
Sbjct: 160 QMQTDVKDGKTAKPRSGGRGGMATGGAGVAARCVGTLQAIIGHAKHKGLLDAHPTQGAKK 219

Query: 164 PKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
              K +  R              +     E          LL +G R  +        + 
Sbjct: 220 LAGKKKTRRLSVAEIVLMGKAMAYAERNGENPVALGVLRTLLLTGYRREEGQAMHRAWVN 279

Query: 219 N--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                 +    K G  I    P     + +   I        ++  +   T  S   +  
Sbjct: 280 GAGGYVAFPDTKGGAQIRAIGPAAVKAVESQPVIVGNPHAFPSEVGRGAFTAVSACLQRV 339

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A  AG+   + H +R    +++ D G +   + A  G  + +  + Y    + ++L +
Sbjct: 340 AKLAGIEGITPHTLRHTFGSVAGDLGFSELTIRAMLGHASQNVTQDYIHIDEALKLAV 397


>gi|300936685|ref|ZP_07151589.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|300458266|gb|EFK21759.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  K  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHNAFPNRPASSITVKQWVDLLTEEEKDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVLFPGEDINKPISIAAANRFVNRIRGVMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 341 MNVEPHVTERMLGHELGGVMSVYNKHDWIEAQRKAYELHADKL 383


>gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457]
 gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1]
 gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457]
 gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28]
 gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90]
          Length = 308

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 71/238 (29%), Gaps = 13/238 (5%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
            S+  +I        +     +    I   +  R ++ ++  + + ++  L + A +   
Sbjct: 63  RSFLGEIDEILKGARFSGFDQEMLDSIIGTLRERGNSNATINRKMAALSKLLRKAHKMGD 122

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
           +   P    ++ +          +E               RL   FL+ +G R  ++   
Sbjct: 123 IFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKSRCEDSYRL-SVFLVDTGCRLGEAIGL 181

Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
               +Q    +    K+    TV L     K   +     +  F   ++ +     F   
Sbjct: 182 TWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASHIPRERLKGPFSMLNQVR-----FRQI 236

Query: 273 FKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +     + G+        H +R   A+     G     +    G +T+     Y   A
Sbjct: 237 WNEAKAEVGLGADDQIVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|145592624|ref|YP_001156921.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145301961|gb|ABP52543.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 395

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/383 (12%), Positives = 104/383 (27%), Gaps = 40/383 (10%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKRE 59
           M        + +  +   G+         G  R         T    Y++ +     +RE
Sbjct: 1   MPNKDGHRRYGSVRKLPSGRYQVRHLAPDGTMRPGDQTFARKTEAERYLTLIEAQMARRE 60

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
           +I+ P +    L+     +       +L   +   +       I    G     +I T  
Sbjct: 61  WID-PNRGKIRLQDYAERWITER--PNLRPRTVHLYRWTLGKHITPHLGGVPLNRIDTPM 117

Query: 119 IRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R           + + A +    +R +   AV+++ +       V    ++    RP  
Sbjct: 118 VREWRSRLLADGVSLTMAAKAYRLLRAILMTAVKEDELIRINPCRVVGADQENAAERPVL 177

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT- 234
                   +      + R       +  LR  ++     Q +     +++ ++       
Sbjct: 178 TVPQIFALAERMPD-RFRALILVTTFGCLRWGEAVALQRQDVDLVAGTVRVRQAFVEHRG 236

Query: 235 --------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK------ 274
                           +      L  +            +            ++      
Sbjct: 237 TGLILGPPKSRAGVRTIALPKAALPMLKQHVSSHVGEAPEAFVFTGENGRNLWRGNFNKL 296

Query: 275 ----AKATKAGVN-KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETY---TKG 325
                     GV     H +R    T+++ A GA+  ++MA  G  +   A  Y    + 
Sbjct: 297 VKWPEAVAAVGVPGLHFHDLRHTGNTLASRAPGASLRDIMARMGHDSPRAALIYQHANRE 356

Query: 326 ADRIRL-GIKNSRRISSVVDSDD 347
           AD+     I  + + +    S  
Sbjct: 357 ADQGIADAIDKAVKAARRKPSKR 379


>gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14]
 gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14]
          Length = 480

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 28/232 (12%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDM 179
             + + P++A   L  +R + + A   E +++     ++  K          R  +  ++
Sbjct: 239 RKKAYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYNEL 298

Query: 180 QQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------T 226
                    +   ++  +    F  +  +GLR ++        +  +   ++        
Sbjct: 299 DHISAITLIQKNKTKALRDNAIFWLMYEAGLRRAEVVNINTYDIDMDRCQLRVVGKGNKE 358

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKA 280
           +        +L +   K LA+                      +              K 
Sbjct: 359 RYVPFSRNSDLYNAMEKWLAIRQQNFNPNLPALFCTINRYQTLTYMRLTTQTLNDLCKKL 418

Query: 281 GV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            +       S H  R   AT    +G     +    G  ++   + Y +  D
Sbjct: 419 NMLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTD 470


>gi|271500920|ref|YP_003333945.1| integrase family protein [Dickeya dadantii Ech586]
 gi|270344475|gb|ACZ77240.1| integrase family protein [Dickeya dadantii Ech586]
          Length = 416

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 93/349 (26%), Gaps = 34/349 (9%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +       G  I+   Y+R    +R  I        +   A       +         P
Sbjct: 30  GLYLLVKPSGSKIWRFNYYRPDTKKRALISFGAFPAVSLAEARQR-RESAKALISKGIDP 88

Query: 65  R------------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
           +                T   + +++ +      LA N+           +     +   
Sbjct: 89  QFHQQQQREQEQAINQNTFAKVAADWYEVKKSQPLAANTIKDIWRSLEKYVFPFIANQPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
            ++T +H  + +E  + +    +  +    +  +  +AV    +  NP   + +  +   
Sbjct: 149 SQLTARHFITALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPANPAAKIRKAFQTPV 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T          +  S  S   Q RL  E+ L +  R +++       L     + 
Sbjct: 209 KTHMPTIRPEALPGLMKTLSVASIELQTRLLIEWQLLTVARPAEAAETRWSELDLTENTW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATK 279
                   +    +     + LA+    K                          A   +
Sbjct: 269 TIPAGRMKMRREHVIPLPSQALAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + +AG     + A       ++    Y + 
Sbjct: 329 MGYKGVLVSHGLRAIFSTAANEAGFPPDVIEAALAHVDTNEVRRAYNRS 377


>gi|260868730|ref|YP_003235132.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257765086|dbj|BAI36581.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|323177089|gb|EFZ62679.1| phage integrase family protein [Escherichia coli 1180]
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  K  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVLFPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 341 MNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKL 383


>gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 312

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 85/291 (29%), Gaps = 34/291 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L+  I  Y K     S + N+ + +     + +  S D         I    + + +   
Sbjct: 12  LERWIETYLKHIQALSYSNNTSLLYRRILLEFVEYSLDYQDEMQINDIKMTFLVNFLNYL 71

Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------- 170
           ++        +  + I +L  +   F +              +++ + +TE         
Sbjct: 72  ENNSKNGNKLSKKTKITYLRVLTSFFSFISDNNDDLFVFSFDMKKIRFRTEKSEEKLNYL 131

Query: 171 -----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
                IR     + ++ K       +  L  + +LY GLR S++    +   +     I 
Sbjct: 132 NENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEIL 191

Query: 226 TQ--------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                     +    I  E  D  ++         +     +  + +N +   +      
Sbjct: 192 KISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIY 251

Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            KA +  K  H +R   A      G     +        ++    Y K  +
Sbjct: 252 AKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATN 302


>gi|120601140|ref|YP_965540.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
 gi|120561369|gb|ABM27113.1| phage integrase family protein [Desulfovibrio vulgaris DP4]
          Length = 400

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 92/334 (27%), Gaps = 31/334 (9%)

Query: 41  STFIPAYMSALTGSTP--------KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
           +       +A TG  P        +        ++  T+  L   Y ++         + 
Sbjct: 59  AELFRLKEAARTGEGPVTLAEQREQARRAREAERQRRTIGGLWDFYLEAHQER---AGTP 115

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149
                    +      +    + T H+   R  +E++  +P S    L  +R + ++   
Sbjct: 116 ADKSRA-KYLAGLFDSYP-EDLRTGHVDALRRKIEAQGMSPQSVKHVLALLRRVLRYCEG 173

Query: 150 Q--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLR 205
           +    +     L  + P          T E  +             LA    L   +G+R
Sbjct: 174 RGLCSLPGRALLIFDLPPVDNAKTENLTHEQARALLEALDADPDQNLAAMVRLALLTGMR 233

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
                      L      I  +         +        + + +     E+ ++   + 
Sbjct: 234 RGALFGLQWGDLDFRNARITLRGATAKSGKTSSIPMTDDARKVLLGVQRTESLYVFPGRN 293

Query: 263 KMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                +   +      +AG+       HG+R   A+  A +G +  ++            
Sbjct: 294 GGKRVECRRFLNRIRLRAGLPDGFRPLHGLRHTFASWLASSGVSLLQIKDLLTHGDYRST 353

Query: 320 ETYTKGAD-RIRLGI----KNSRRISSVVDSDDP 348
             Y+   D   RL      ++  +  +     +P
Sbjct: 354 TRYSAFFDHEQRLAASLIGEHLAQAVNAEPVTEP 387


>gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 95/318 (29%), Gaps = 24/318 (7%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES------YFD 100
                  +   +           TL     +Y K          +  S++       +  
Sbjct: 87  AKKEKVSAEEVKNAFQGIVSGQETLIGYCDKYDKMLAARIGVNMTLESYKRYGISFNHVK 146

Query: 101 QIIRK---SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           + +R      D  ++ +    I +         K  P++ I  +  ++++ K A     +
Sbjct: 147 RFLRAKYNLSDISFQALDYSFIEAFDFYLRVQLKFKPNTIIGIVGHLKIIVKRAANDGII 206

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSC 210
             NP +     + +    +  T +++ +  +   +     L  +  L+   +G+  SD  
Sbjct: 207 TRNPFIGF-SLEGEPLQPKSITGQELNKIMTTPLDSPNRYLVRDMFLFSVFTGIAFSDIR 265

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQ 268
                +L      +    +    T       +  L +  I K             ++ ++
Sbjct: 266 NLTCNNLVQAEDGVWWIHSKRRKTGTEFHVPLLELPLQIIEKYRGLNKDGKMFVMLSCSK 325

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKG 325
            +   K  A   G+ +  + H  R   A++     G     +    G + +     Y + 
Sbjct: 326 TNGNLKKIAKICGIKRNITFHMARHSYASLITLSQGVPMETVSRMLGHRDLRATRIYAQV 385

Query: 326 ADRIRLGIKNSRRISSVV 343
           ++         RR+   +
Sbjct: 386 SNEKINTD--MRRLEKRI 401


>gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112]
          Length = 247

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 65/244 (26%), Gaps = 18/244 (7%)

Query: 111 YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            R++    ++  V +R       S+  + L  +     +   +                 
Sbjct: 1   MRELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDG 60

Query: 168 TEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            E    W                +     R      L +G R ++        +      
Sbjct: 61  GESRVRWISRSEATALILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSH 120

Query: 224 IK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFK 274
            +      K G    V L  G +  L             ++    +++          F 
Sbjct: 121 FRLKCEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFV 180

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           A   +AG+     H +R   A+     G + + +    G  ++  AE Y    +D  R  
Sbjct: 181 AACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREA 240

Query: 333 IKNS 336
           ++  
Sbjct: 241 VQKL 244


>gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1]
 gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1]
          Length = 531

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 85/316 (26%), Gaps = 43/316 (13%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNS--RISFESYFD-QIIRKS 106
                +  +  +++    +  +  +             A ++    +     +  +    
Sbjct: 147 RRDHAQSDDKRQEEDVIFEDFVPRFMAFCESPVAGRRGANSTGELSNKRGTIEQHLSPYF 206

Query: 107 GDFDYRKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAI- 155
           G+   R+I  + + + V ++            + S+    L  +R + K A R E +   
Sbjct: 207 GEMPLRRIGARQVDAYVCAKAQERSKRTGKPLSASTIANHLAVLRRMLKVAHRWELIDRV 266

Query: 156 ----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDS 209
                P              +   +      +  +    +   RL     L +G     +
Sbjct: 267 PDIQPPRKGTVDNYLSKREAQALLEHADPLTRDLFMLALRTGMRLGELRELRTGDVDLAN 326

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------------TPIGK 252
            R  V+  +     +   K G   TV++P   +++L                        
Sbjct: 327 GRIQVRRQRTQEGEVTPPKYGRKRTVQVPADALEVLRKRLAGLGRKELVFSKPKGYKAAH 386

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMAT 310
                    +  +              AG+ +S   H +R   AT +  AG     +   
Sbjct: 387 RGERAAKGGEPWSHKDLFNAVNRARAGAGIERSVGVHTLRHTFATHAVAAGVPLSLVSRQ 446

Query: 311 YGWKTVDQAETYTKGA 326
            G   V     Y   A
Sbjct: 447 LGHSDVRTTMRYAHHA 462


>gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638]
 gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638]
          Length = 329

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 83/294 (28%), Gaps = 35/294 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHT 129
              Y  S +    +  SR +  S+ + +    G           +   H+    E  + T
Sbjct: 38  ARAYLLSLN----SPRSRQTMASFLNIVAGMLGAASLETCSWGSLRRHHVMGVTELLRDT 93

Query: 130 PS---SAIQFLTSMRVLFKWAVR---------QEYVAINPCLSVERPKRKTEGIRPWTKE 177
                +   +L++++ + K A           Q   A+        P+ +        K 
Sbjct: 94  GRATATVNTYLSALKGVAKEAWMLKLMDVESFQHIRAVRNLRGSRLPRGRALPAEEIGKL 153

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------ 225
                      G +       +L  GLR S++    +  +  +  +++            
Sbjct: 154 FAVCEADATYLGVRDAALLGVILGCGLRRSETVGLSLSDVVTHERALRVLGKGNKERLAY 213

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285
                        D      A     +   F      ++         + +  +A + + 
Sbjct: 214 MPAGTWQRLQTWIDQVRGEAAGPLFTRIRRFDTLTNDRLTDQAVYHILQMRQRQAQIERC 273

Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337
             H +R+  AT   D G     +    G  +V   + Y  +G +R+R       
Sbjct: 274 APHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEERLRQARDRLN 327


>gi|85713948|ref|ZP_01044937.1| integrase [Nitrobacter sp. Nb-311A]
 gi|85699074|gb|EAQ36942.1| integrase [Nitrobacter sp. Nb-311A]
          Length = 340

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 83/327 (25%), Gaps = 19/327 (5%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           YY     G R R      +    A  +       +             +  ++++Y +  
Sbjct: 19  YYIVWTEGGRSRERSTGSADRAVAEAALADFLHIRTRDAGPRDPAEVLITDVLADYTEEH 78

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142
              + A     +       ++         ++T +  R    SR   P +A + L  +R 
Sbjct: 79  APETAAPWRIAA---AVKAMVPYWQGKTVAEVTRETCRKYGVSRARAPGTARRELGVLRA 135

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA----FEF 198
               A R   +     + +  P       R  T+++            + RL        
Sbjct: 136 AINHAHRCGRLLRVVAVDL--PDGAEPRDRWLTRKEAAALLRAALREPRVRLHLPLFIVI 193

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMTPIGK 252
            LY+G R           +      I   + G   T +           +  L       
Sbjct: 194 GLYTGQRKEAILSLRWPQIDLVNGRIDFNQPGARRTNKRRSRIPIPARLLSHLKRACQRG 253

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311
                   +           F     +  +   + H +R   AT     G    E     
Sbjct: 254 TELGFVIHENGRRLKDIKRSFATACDRGELAGVTPHVLRHTCATWLMQKGVPIWEASGYL 313

Query: 312 GWKTVDQAET-YT-KGADRIRLGIKNS 336
              T +  +  Y     D +R  ++  
Sbjct: 314 N-MTPETLQRVYGHHHPDHLRSAVEAL 339


>gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217]
 gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217]
          Length = 175

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL 245
              + R A      +GLR S++    V  + ++     ++  K     TV L    + +L
Sbjct: 8   PSLKARAALTTAYAAGLRASEAVSLKVTDIDSDRMVLQVRHGKGAKDRTVMLSPQLLGIL 67

Query: 246 AMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                    K+  F     + ++        ++    AG+    S H +R  SAT   ++
Sbjct: 68  RTYWRLARPKDWLFPGRGDKPIDVQVLHSTCRSATKAAGLTKKVSVHTLRHSSATHLLES 127

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   +     YT+ A
Sbjct: 128 GVDIRVIQVLLGHSNLSTTARYTQVA 153


>gi|116511381|ref|YP_808597.1| integrase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107035|gb|ABJ72175.1| Integrase [Lactococcus lactis subsp. cremoris SK11]
          Length = 374

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 123/369 (33%), Gaps = 48/369 (13%)

Query: 11  VTKERTRHGKIIYY--FRKGHGRRIRLPYP----HESTFIPAYMSALTGSTPKREYINSP 64
           + K++  +GK  ++  ++    +  ++              A          K       
Sbjct: 1   MYKKQQPNGKWKFFEKYQDKQDKWKQVSVTKNSGGREAQSQARTELELKIAEKLSEEIEA 60

Query: 65  RKKPTTLKWLISEYRKSAHWG--SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
            + P T+      Y +S       LA ++ +S        I+K G  +   I  K ++  
Sbjct: 61  EEAPKTINEC---YAESRKIRQAELAESTYLSETYGLKDFIKKFGQREIISIEPKEMQEY 117

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWT 175
           + S K++ ++       +  +F++A    +   N    +  PK+K           + +T
Sbjct: 118 LFSNKYSNTTRHTIALRIGHIFQYAYSMGFTHENIMNRIILPKQKKSAESLAKWKEKFFT 177

Query: 176 KEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            ++M++F   W   +  +         EFL  +GLR  ++      H+      I  Q +
Sbjct: 178 MDEMRKFLKSWRSHAVEKDDFKRADFVEFLFLTGLRIGEASGLQWSHVDILKRVIYIQFS 237

Query: 230 GTI--------------ITVELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIW 272
                              V L D  +++L      K      F+ ++  ++     + +
Sbjct: 238 WNCNLKKLGPTKNPQSVRYVTLNDRCLEILENFRKDKYGSKFVFVKSNGVQIRNADINTY 297

Query: 273 FKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
            K +  +A +        SAH +R    T+ A  GA    +M   G          YT  
Sbjct: 298 LKIEGARANLFGKNYKQFSAHMLRHSHITMLAFLGAPQKAVMERVGHMDARITNGVYTHV 357

Query: 326 ADRIRLGIK 334
               R  ++
Sbjct: 358 LPENRQDLQ 366


>gi|332107807|gb|EGJ09031.1| Phage integrase [Rubrivivax benzoatilyticus JA2]
          Length = 427

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 83/313 (26%), Gaps = 38/313 (12%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117
                P+      +  ++ +           +     +S  D  ++   GD    +IT  
Sbjct: 88  PAAAVPKPASPNFREFVTTWLAEHQIEWRRSH-LKVLKSTLDAHLLPAFGDKPVGEITKS 146

Query: 118 HIRSGVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            I +        P               L  +R +   A  +         +V   K + 
Sbjct: 147 DILAFRAKLADKPGRTGDKLSSKRINNILGVLRQIMADAADRHGFISPSA-NVRPLKVRK 205

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF------ 222
             ++P++ + +QQ  +      +    F    ++G+R  ++     +++           
Sbjct: 206 SDVQPFSLDQVQQILAVVRPDYRDY--FTVRFFTGMRTGEAHGLKWKYVDFERRLILVRE 263

Query: 223 ------SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQ 268
                    T+   +   +++     + L                    +    K  + +
Sbjct: 264 TFVLGEDEYTKTDSSQRDIQMSQPVYEALKRQHAATGKLSEYVFCNREGHPLDNKNFSER 323

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA- 326
                      A   +  + +R  +AT+   +G +   +    G          Y     
Sbjct: 324 VWYPLLRHLELA--PRRPYQMRHTAATLWLASGESPQWIANQLGHANSQMLFTVYGHFVP 381

Query: 327 DRIRLGIKNSRRI 339
           +  R       R+
Sbjct: 382 NMTRRDGSAIDRL 394


>gi|260843428|ref|YP_003221206.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257758575|dbj|BAI30072.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 415

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 105/355 (29%), Gaps = 29/355 (8%)

Query: 21  IIYYFRKGHGR-----RIRLP------YPHESTFIPAYMSALTGSTPKREYIN---SPRK 66
             + +R G GR     RI+L                 Y + L      R  +N       
Sbjct: 51  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQYRAWLAEGKNPRHELNYTVQEAL 110

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  +  
Sbjct: 111 KPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQV 169

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDM 179
            K TP +A   L + +   K+  R+ Y   N    +      ++P      +      ++
Sbjct: 170 AKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGEL 229

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            Q                 L+  G R  +   + +             K  +   V +  
Sbjct: 230 LQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFR 289

Query: 240 GFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295
              + +            +      +    T  S + +    +    + S H +R+   T
Sbjct: 290 PIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTT 349

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           + +D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 350 MLSDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWMERLGILAGTHE 404


>gi|126011063|ref|YP_001039888.1| putative integrase [Streptococcus phage phi3396]
 gi|124389332|gb|ABN10774.1| putative integrase [Streptococcus phage phi3396]
          Length = 398

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 108/385 (28%), Gaps = 47/385 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++  +      T   A  +ALT    +   
Sbjct: 5   KTKYP-NIFWYETLKGK-RYYIRRSYFFQGKKKEITKSGLKTIPEA-RAALTEIEKQINE 61

Query: 61  INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
            +       T+      +  K         N+  +++S     I+++ G    R +    
Sbjct: 62  KSIGINMNITVSGYWEIFHEKRVATKRWTPNTEETYKSLMKNNILKEYGSVKLRNLNRND 121

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               + +   T    S          +   AV    +  N    +   +           
Sbjct: 122 YEVYIANMLMTKPRESVKCINNCFMAMLNDAVLNGNIPANRLKGIYVGESTIPPKNKKVT 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +  Q     +E    ++ F     +  GLR  +        ++ +       K     +
Sbjct: 182 MEQFQEWFIKAEQMMDKIFFSLTYLTIFGLRRGEIFGIRQMDIRFHHDGRAILKLHDSRS 241

Query: 235 VELPDGFM---------------------------------KLLAMTPIGKETFFINNDK 261
               +G                                   +L  +     +   I  D 
Sbjct: 242 NHTKNGRHGLKTKESERYVMLDIKGTELLLFLRDNATTIKKRLSIIKDKEWDYISIKEDG 301

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +N  + +  F+      G   + H +R F  T S  AG     L    G   +   + 
Sbjct: 302 NLINPNKLNDEFEKVNEIVGFRVTPHMMRHFFTTQSIIAGVPMEALSKALGHTKMYMTDK 361

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           Y +  D   L ++ +   S+ +D++
Sbjct: 362 YNQVHDE--LSVQVTDAFSAFLDNN 384


>gi|307258136|ref|ZP_07539886.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863321|gb|EFM95254.1| Phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 338

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 98/325 (30%), Gaps = 25/325 (7%)

Query: 16  TRHGKIIYYFR--KGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            R    I++       G RIR             +   L       E +N  R      +
Sbjct: 5   KRKDSAIWWVDVVTPSGSRIRRSSKTAIKKQAQEFHDKLKSQLWDVEILN--RSPDRYFE 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126
             +  + K             S +++      +      + +T++ + +         ++
Sbjct: 63  EALLLFLKDGQGQKR----FDSKQAHAQYFRERFQGRTLKSLTSEELINAIPTFCQRRNK 118

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +P++  ++ +S+  +F  A +  +V   P +  +    + +    W ++         
Sbjct: 119 PLSPATQNRYRSSLLRIFSLAHKAGWVEKIPFIMRKN---EPKVRVSWLEKSQAAELINS 175

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
                 R    F L +G R S+        +                    ++ L +  +
Sbjct: 176 LNLEWMRNVCTFALLTGARMSEILTLTWDKVNFAKNLAIVTNDKAKSGKARSLPLNNKAI 235

Query: 243 KLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
           +LL       ++ ++       +A        F+    K G+     H +R   A+    
Sbjct: 236 ELLQKIKAKSKSKYVFVRCSTGHAIGDIDRRDFRQACEKIGMPSFHFHDLRHTWASWHVQ 295

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           AG     L    GW+T++    Y  
Sbjct: 296 AGTPLFTLKEMGGWETLEMVRKYAH 320


>gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 6/101 (5%)

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIWFKAKATKAGV---NKS 285
                        + + P         N    +  ++ +      KA   KAG+     +
Sbjct: 63  DRKYPSAYRQAAWIFVFPSSTLCNHPYNGKLRRHHLHDSVARKALKAAVQKAGIVSKRVT 122

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT    AG     +    G   V   + YT   
Sbjct: 123 CHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|148986115|ref|ZP_01819101.1| putative integrase (phage associated) protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147921829|gb|EDK72956.1| putative integrase (phage associated) protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799166|emb|CBW31679.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGFTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYNNHIKAKFGSILLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|296393463|ref|YP_003658347.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180610|gb|ADG97516.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 411

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 91/322 (28%), Gaps = 25/322 (7%)

Query: 18  HGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           HGK   +  R        L    +             ++  +    S +    T++    
Sbjct: 61  HGKGKRWRARYVDDYGQELTKAFDRKADAQVWLDKQVASLVQGTHVSAQDAKITVEQWCE 120

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            + K   +      S  + + + ++I  + G      I    ++  + + +     A  +
Sbjct: 121 RWLK--GYSGHRDASVKAAKVHINRINEEFGHRVLGSILPSDVKIWITNLR-KEGLADSY 177

Query: 137 LTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           + S+    R +F  AV    +  NP      P R  +  + +       +  +       
Sbjct: 178 IYSLHRRGRQIFGDAVHDRKLVENPFSRKTAPPRGKQ--KCYVISTETLWALYGELPRHL 235

Query: 193 RLAFEFLLYSGLRC---SDSCRAGVQHLQNNIFSIKTQKT--------GTIITVELPDGF 241
           + A     + GLR      + R  +   +     ++             T + V      
Sbjct: 236 KTAVLLGAFVGLRIAEAGAALRTDMDFFKRVFNPVRQWPDEPLKSEMSNTPVPVSQEFVT 295

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATIS 297
           +    + P        +++   +         +       V+     + H +R ++A+  
Sbjct: 296 LLSTTILPGDHTHLVTHDNGDPVAPRYIEQAIRELRESGKVDLPETFTFHDLRHYNASYL 355

Query: 298 ADAGATAHELMATYGWKTVDQA 319
             +GA    +       +    
Sbjct: 356 IASGADIKTVQTRLRHASAKTT 377


>gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 313

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 81/268 (30%), Gaps = 15/268 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHT 129
           L+   +++ + A   +   +S   +   ++QI +   G    R I      +        
Sbjct: 13  LEDGYNKFVEYAKANNYRKDSITHYYYTYNQITKIIDGKTLLRDINIDVYNTLTIKLIEK 72

Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE---DMQQFK 183
                +   +L + + +  + ++  YV        +  ++  E       +        K
Sbjct: 73  GIKNVTLKTYLKTFKTIINYCIKNGYVEHFVMELPKVDQKTIETYSDEELKILLRKPNMK 132

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGF 241
           +      +  +   FLL +G+R S      +  +  +    +I   K    + V L +  
Sbjct: 133 TCIFTEYRDWVIINFLLSTGVRLSSLANIKIGDIDFDTSTINITHTKNRKALIVPLNNQI 192

Query: 242 MKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295
           + +L      +     E  F     + +         +      GV  +  H  R   A 
Sbjct: 193 LTILKEYLYQRGGDKDEILFCTIWGKPLTRNSLGTAIRHYNNSRGVTTTGIHRFRHTFAK 252

Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323
                G     L    G  ++D  + Y 
Sbjct: 253 KWVLNGNNIVALQKILGHSSLDMTQKYI 280


>gi|282600645|ref|ZP_06257673.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
 gi|282571684|gb|EFB77219.1| site-specific recombinase, phage integrase family [Subdoligranulum
           variabile DSM 15176]
          Length = 375

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 97/337 (28%), Gaps = 25/337 (7%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+   R P ++ ++        ++  KG GR+I+        +       L       + 
Sbjct: 35  MSGKRRKP-YMVRKTIG-----WHLDKGKGRQIQ--DFIIIGYAETRAEGLKMLAEYNQN 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    T   +   + KS  + +++ ++   +E+ +  +     D  +R+I    ++
Sbjct: 87  PYDVDTAKVTFAEVYERWSKS-KYPTISHSNVKGYEASYK-VCGFLYDKAFREIKLCDLQ 144

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRKTEGIRPWTK 176
             +E+      +  +       ++ +A++ +    +       +  R K      R    
Sbjct: 145 LVIETCGKNYPTLKKLKGLFNQMYAYAMKNDICNKDYSQFVDLAGYRDKNPNRRDRNIFT 204

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++              ++          R S+      +++          ++ T   + 
Sbjct: 205 KEELATLWAHKANPYCQILLMLNYN-ACRISEFLDLKKENVHLEKQYFDVVESKTENGIR 263

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKATKAGVNKSAHGVR 290
                 K+L       E           +            ++     + G+    H  R
Sbjct: 264 KVPIADKMLPFYKGWMERSPCEYLLCTTDGKHLDYFNYCDTYWDPLMEEYGMKHKPHDTR 323

Query: 291 KFSATISADAGATAHELMATYGWKTVDQ--AET-YTK 324
               ++ ADAG          G  +      E  YT 
Sbjct: 324 HTCISMMADAGVNPTIQKKIAGH-SGAMSLTERVYTH 359


>gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 352

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 95/322 (29%), Gaps = 57/322 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------GDFDYRKITTKHI 119
              ++ +     + +  ++I++       ++                 D     + +  +
Sbjct: 28  FFKDFFRGIEPRTQS-RTQIAYAYDIKIFLQFLLNENPDIKRSCSKISDIPLSSLESLSV 86

Query: 120 RSGVESRKH-------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               E  ++               ++  + +++++ +FK+  R E ++ N    V+ PK 
Sbjct: 87  TDIEEYMEYLKYRDTDGKKISNKENAVKRKISTLKSVFKYFYRVEKLSENIMERVQLPKL 146

Query: 167 KTEGIRPWTKEDMQQFK---------------SFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            ++ I     +++                          +       LL +G+R S+   
Sbjct: 147 HSKEIIRLDIDEVAMMIDEAENGEGLSERQKAYHNKTKIRDVALLSLLLGTGIRVSECVG 206

Query: 212 AGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPI----------GKETFFINND 260
             +  +      I   +K G  +T+   D   + L                +   F++  
Sbjct: 207 LNISDVDFKHNGILIHRKGGKEVTIYFSDEVKEALQNYFDERVLILEESGHEGALFLSMQ 266

Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++++        K  A         + H +R    T         + +    G   V+ 
Sbjct: 267 NKRLSVRSVEKLVKKYAKIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNT 326

Query: 319 A-ETYTKGADRIRLGIKNSRRI 339
             + Y    D  R   +N  ++
Sbjct: 327 TKKHYAAIEDDRRRSARNVVKL 348


>gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +    KAG+    S H +R   AT     G    ++    G   V+  
Sbjct: 97  HHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium]
          Length = 163

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|145630449|ref|ZP_01786230.1| prophage integrase [Haemophilus influenzae R3021]
 gi|144984184|gb|EDJ91621.1| prophage integrase [Haemophilus influenzae R3021]
          Length = 293

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 92/272 (33%), Gaps = 19/272 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--- 121
           +K   T++  +    K A          ++   +      + G+     +T++ I++   
Sbjct: 6   KKPEKTVEQALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIP 61

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +  +P++  ++ +S+      A +  ++ + P ++        + IR  T+++
Sbjct: 62  THVVRTGKILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAKNS--EPKKRIRWITEKE 119

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
            ++     +     +   +F L +G + ++        +                    +
Sbjct: 120 AERLLDSLNLN-WMKDVCQFALLTGAKMTEILSMTWDKINFANKMAIVTGDIAKSGRGRS 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKF 292
           + L D  + L+      + + ++ +          S   FK    +A +     H +R  
Sbjct: 179 LPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHT 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     G     L    GW+T++  + Y  
Sbjct: 239 WASWHIQRGTPLMVLKELGGWETIEMVQKYAH 270


>gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K     AG+    S H +R   AT   ++G     +    G K V     YT  
Sbjct: 103 GLQRALKDALRLAGIAKPASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162

Query: 326 A 326
            
Sbjct: 163 L 163


>gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23]
 gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23]
          Length = 379

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 91/281 (32%), Gaps = 29/281 (10%)

Query: 68  PTTLKWLISEYRKSAHW----------------GSLAVNSRISFESYFDQIIRKSGDFDY 111
           P T + L   Y  ++                    +  +++   +     +       D+
Sbjct: 87  PFTFERL-ERYLNNSESGTTNSFLSFMEKRIYERQVTDSTKQRQKCVLKALKEFGRIKDF 145

Query: 112 RKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             I  ++IR+  E    R    SS   +   ++V  + A     ++ NP  + +  + K 
Sbjct: 146 TDICDENIRAYDEFAKKRCKCQSSVYNYHKILKVFVREAYAAHLISENPYQNFKLDRGKR 205

Query: 169 EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSD-SCRAGVQHLQNNIFSI 224
              R  TKE++ + ++   +     + R  F F  Y+GL  +D +       +  +    
Sbjct: 206 VARRFLTKEELVKLETKQIDDMCLNRVRDLFLFCCYTGLAYADLAIFNFKDAIMTDGMYR 265

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
              +     T        K++ +    +    + ++++  +  +    F     K     
Sbjct: 266 IRDERIKTGTPYNISLMDKVMNILKKYEFKLPVISNQKYNSYLKILGAFCEIKKKL---- 321

Query: 285 SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTK 324
           ++H  R   AT  +   G     +    G   +   + Y  
Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAH 362


>gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 74/304 (24%), Gaps = 52/304 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            +   R+       ++ +  ++  +  + I          ++   ++S +     T + A
Sbjct: 7   FLESVRQDIRLRGYSLRTEKAYLYWIKRYILFHNKAHPETLSADDVKSFLTWLATTQNVA 66

Query: 134 -IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +   Q        L      ++       + +++ Q  S        
Sbjct: 67  VNTQKVALNSLV-FLYHQYLKIELGDLGFTLATKQRTLPTVLSPKEIAQILSNM--NGTA 123

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL----- 245
           +   E L  SG+R ++  R  VQ +       +I+  K        L      LL     
Sbjct: 124 KFVIEMLYGSGMRVNECLRLRVQDINIENLSLTIRDGKGNKDRQTLLSRSCSHLLTAYID 183

Query: 246 -----------------------------------AMTPIGKETFFINNDKQKMNATQFS 270
                                                             K      +  
Sbjct: 184 SAIELQSSDNENGFGPSLPYSLGKKYPKAFQQPAWMFVFPSNNISEHPVTKMPCRHHRHD 243

Query: 271 IWFKAKATKA-GV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +     A G+       + H  R   AT     G     +    G   ++  + YT 
Sbjct: 244 STIRKALQNAVGMTNIMKKVNCHTFRHSFATHLLQTGTDIRTVQELLGHNDLNTTKIYTH 303

Query: 325 GADR 328
              +
Sbjct: 304 VLGQ 307


>gi|13095863|ref|NP_076752.1| integrase [Lactococcus phage bIL310]
 gi|15672029|ref|NP_266203.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12722887|gb|AAK04145.1|AE006243_9 prophage ps1 protein 23, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831052|gb|AAK08405.1|AF323671_1 integrase [Lactococcus phage bIL310]
          Length = 394

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/397 (12%), Positives = 121/397 (30%), Gaps = 67/397 (16%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R     +S  +       A+       + +
Sbjct: 2   NIKEYTKKDGTKVYRANVYLGVDSLTGKQVRKVITAKSEKMCNTKISRAINEFEKNGQTV 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                     K +   +  S     +   +    ++  +  ++   G++   K+ +  ++
Sbjct: 62  RKVSVDD--FKDIAMLWFDSYKL-GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQ 118

Query: 121 SGVESRKHTPSS---------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             V       S                   +   +  +FK A+    V  NPC++V  PK
Sbjct: 119 QIVNQWMINASQPLNGAYHRPKGKGKDFKIYFNIVERIFKHALSLGLVKDNPCVNVIVPK 178

Query: 166 RK----TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGV 214
            +     + ++  T E ++ F  +     + +   E +       + SGLR  ++     
Sbjct: 179 VRLESTEKKVKHLTAEQLKIFFEYIGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSW 238

Query: 215 QHLQNNI-------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
             +                      +   +   V +    +++L    + +  +F++  K
Sbjct: 239 SDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGK 298

Query: 262 QKM------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
            K             +      +         + +   HG R   A++  +A     E+ 
Sbjct: 299 GKQELVFPNRTGGVLDYQTMRPFLIKWLRACQLPQVGFHGFRHSHASLLLNADVPYKEIQ 358

Query: 309 ATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
              G  ++     TY+      +  IK   R  S+V+
Sbjct: 359 ERLGHASIKMTMDTYSHLESDNK--IKAVERFESIVN 393


>gi|307269909|ref|ZP_07551235.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|306513699|gb|EFM82305.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
          Length = 372

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 112/377 (29%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +   +  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEDKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKT 226
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 227 QKTGTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ------- 268
                                      + L +  I +E           +          
Sbjct: 237 MLVKNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKST 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKICDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 410

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 100/357 (28%), Gaps = 40/357 (11%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTG-----ST 55
            + +PP +   K     GK +        +RI L            Y   +       + 
Sbjct: 40  KMDVPPRLWDVKNSRASGKSV------EAQRINLAVDKIRVEVNRRYQELMQTDGYVTAA 93

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------ 106
             ++       K  TL  L  ++          S A  +   + +  + I          
Sbjct: 94  KLKDAYLGIGIKQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKR 153

Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D   +++    I          +K   ++   ++ +++ +   A     +  NP     
Sbjct: 154 EDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYI 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               ++      T+ ++Q       + +     R  F F +++GL  SD       HLQ 
Sbjct: 214 N-SPESVDRGYLTQTEIQTLMDAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTTDHLQT 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKA 275
                    T         +  ++LL +     E +       +     +    +   K 
Sbjct: 273 FFDGNLWIIT--RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKE 330

Query: 276 KATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + G       H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 331 IGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 387


>gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 91/272 (33%), Gaps = 19/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  +   ++  +  +           D   +++T   I          
Sbjct: 118 EDYAKQVEAGMKAKGTFNKYKIVYKHLQEFLTIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  M
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRM 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +A   I K      + +        +     +  A + G+ K  + H  R  +AT   
Sbjct: 297 LDIAKRIIDKYRGLCGDGRIFPVPHYNTCLAGIRTVAKRCGITKHITWHQSRHTAATTVF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     + +  G K++   + Y K     
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYAKITKEK 388


>gi|320006288|gb|ADW01317.1| phage integrase [Lactobacillus phage Sha1]
          Length = 378

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 89/361 (24%), Gaps = 35/361 (9%)

Query: 14  ERTRHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +R + G  +   +R   G  +               +        +      +K      
Sbjct: 5   KRVKKGYLVRISYRDHAGNYLSKRKTFTRKRDAEEFA--NSFEVSKFSGELEKKPSIEFS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                + ++    +LA  +   +E    +I           IT K  +  +      H  
Sbjct: 63  KYFYSWYETYRKPNLAYITTRRYELVHTEIENYFAHARIADITRKDYQKFINQYGKNHAK 122

Query: 131 SSAIQFLTSMRV-----LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            S  +    ++      +F+  V  ++         +  +          +         
Sbjct: 123 DSVKKLHNLIKACVGNAVFEKDVETDFTYNVIITYDKN-RSLKIDYLNLAEIKQLTAYVQ 181

Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
                +   +      +++G R  +      + +     +I   K+              
Sbjct: 182 NHLNPRYTSQYMIMTAIFTGARLGEIMALTWKDINFTFNTISINKSWNYVEGGGFKPTKT 241

Query: 233 ----ITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284
                T+ +   F+  L       +E  F N       +   +   ++     G+ +   
Sbjct: 242 ESSNRTIRVNKQFLDSLKALKVNNREMVFENVSHDIPTSNGVNKVLRSDLKALGITRKGF 301

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             H +R              + +    G   +      Y    D  +       +IS  +
Sbjct: 302 HFHSLRHSHVAFLLSQNIDLYIISKRLGHSDIGTTSRIYAYLIDEYKARSD--EKISGSL 359

Query: 344 D 344
           D
Sbjct: 360 D 360


>gi|268318885|ref|YP_003292541.1| hypothetical protein FI9785_391 [Lactobacillus johnsonii FI9785]
 gi|262397260|emb|CAX66274.1| unnamed protein product [Lactobacillus johnsonii FI9785]
          Length = 350

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/331 (9%), Positives = 88/331 (26%), Gaps = 33/331 (9%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKW 73
            R            HG+R  L    ++            +   ++          T  K 
Sbjct: 6   KRGSSYRARVTIYKHGKRDYLTKSFKTEQEAKVW---GTTLELQKAKGQAIAHQNTLFKD 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               Y  +     +   +  ++       + +   +       +  + +      + H+ 
Sbjct: 63  FYYLYVHTVKVNDVRKATFDNYVKAGLVINNLFPTAKLGKLDDVQMQSVLDKY-GKTHSK 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS 187
            +  + L  +R   ++A  + Y+  +    ++   ++          +     +      
Sbjct: 122 KTVSELLKKIRTALRYAYAKGYIYNDFASLLKAHGKELPKRNKALSMSDLTKLKHYLINH 181

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTI 232
             ++  L     + +GLR  +      + +  +                     +   + 
Sbjct: 182 TDNEFNLMILLEISTGLRRGEILGIKPEDVHFDGQYYCVEVKRSISPTNDDTKLKTKHSR 241

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
            ++ +P     LL      +  +  N    K +        K    + G+  +  HG+R 
Sbjct: 242 RSITIPKNLYNLLKEISPKESGYLFNWYHFKQS-----ELLKKLLKEIGIPTTTFHGLRD 296

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A+           +    G  ++   E Y
Sbjct: 297 THASFLFSNNIPLSYVSRRLGHDSILTTEKY 327


>gi|227115381|ref|ZP_03829037.1| prophage integrase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 383

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 100/365 (27%), Gaps = 34/365 (9%)

Query: 15  RTRHGKIIY---YFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
               G  I+   Y+R    +R  I        +   A            + I+    +  
Sbjct: 2   VKPSGSKIWRFNYYRPDTKKRALISFGSFPAVSLAEARQRREVAKALISKGIDPQFHQQQ 61

Query: 70  -----------TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
                      T   + +++ +      LA N+           +    G     ++T +
Sbjct: 62  QREQEQAINLNTFAKVSADWYELKKSQPLAENTIKDIWRSLEKYMFPFIGTLPITQLTAR 121

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           H  + +E  + +    +  + +  +  +  +AV    +  NP   + +  +        T
Sbjct: 122 HFITALEPIQASGKLETVKRVIQRINEVMDYAVNSGLIPANPAAKIRKAFQTPVKTHMPT 181

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-T 229
                     +  S  S   Q RL  E+ L +  R +++       +     +       
Sbjct: 182 IRPEALPGLMKTLSVASIELQTRLLIEWQLLTVTRPAEAAETRWSEINLADNTWTIPAGR 241

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKS 285
             +    +     + LA+    K            +             A   + G    
Sbjct: 242 MKMRRDHIIPLSPQALAILDAMKPISGHREYLFPSSKDPKQPMNSQTANAALRRMGYKGV 301

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKNSRRIS 340
              HG+R   +T + + G     + A       ++    Y +    ++ ++ +       
Sbjct: 302 LVSHGLRAIFSTAANEEGFPPDVIEAALAHVDTNEVRRAYNRSTYLEQRKILMCWWGEFV 361

Query: 341 SVVDS 345
               +
Sbjct: 362 ETAAT 366


>gi|331086908|ref|ZP_08335985.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410074|gb|EGG89509.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 463

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 109/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R GK  +IY ++   G+R +    +++               K+E  +   +K  TL 
Sbjct: 5   RERKGKFNVIYNYKDDSGKRKQKWETYDTKAEAKKRK--REIEYKQEMGSLVVRKCNTLS 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----- 126
            L++EY         A+++     S     I    G     +I T+ +    +       
Sbjct: 63  DLLTEYVSLYGKEKWALSTYEGNVSLIRNYIEPMIGTVKLSEINTRFMERFYQGLLQTKA 122

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         + S+       +R  F+ A++ E +  NPC+    PK K++    W
Sbjct: 123 VGNPVKGNKRNEYVSASTVRDIHKLLRNCFEQAIKWEMLEKNPCIYATVPKHKSQKREIW 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T E +        E  + +LA        +R  +        +  +  +I+  +    I 
Sbjct: 183 TAETLMYAMDV-CEDQRLKLAINLSFSCSMRLGELLGLTWDCVDISPEAIEENRAYVYIN 241

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K    +   K     +     F           
Sbjct: 242 KETQRVKKESLKDLEGKDVLLVFPSQHKTNTTVQILKTPKTESSIRKVFLPKSVANMLVE 301

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K    +  +     H +R  
Sbjct: 302 WKAEQDEVKEVLGEEYIDYNLVMATTFGNPIGTGAIRGQLKKLIEEHNLPPVVFHSLRHS 361

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   VD   + Y+   D  R 
Sbjct: 362 SVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRR 402


>gi|325977913|ref|YP_004287629.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177841|emb|CBZ47885.1| phage integrase family site specific recombinase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 385

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 100/364 (27%), Gaps = 46/364 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
                 ++ K R      IY    G                  + + +       E    
Sbjct: 9   KKSKTGYLYKVR------IYRVIDGKRHDYFKSGFKTRREAKEHEAMIYHKKSTGELSEL 62

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
            R      + +  E+ K+         S  + + +   I+   G+F   KIT    +  +
Sbjct: 63  LRAPERRFEEVFEEWFKTYQDTVERTTSVRTDDMFRLHILPTLGNFKISKITPWQCQEFI 122

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             +  T  +  Q  +    +F +AV+ + +A NP   V  PKR+ +    +   D     
Sbjct: 123 TEKGKTFRNIKQVKSYTNQVFSFAVKMKLIAENPMRDVTLPKREQKQSDNFFNVDELHEF 182

Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------------I 224
                  E  +    F  L YSGLR  +        +  +                    
Sbjct: 183 LAIVKVEEPYKNYALFRLLAYSGLRKGELYSLRWSDMNFDKQILSVTKNLGRIKGKAVEK 242

Query: 225 KTQKTGTIITVELPDGFMKLLAMT-------------------PIGKETFFINNDKQKMN 265
            T+   ++  + L      +L                               +   Q + 
Sbjct: 243 STKNRFSVRQIPLDAETTAILREWKQQSKKEKGQLSVTPLIDNDYMFTFVDRDGKIQPLY 302

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               +   K    K  + K + HG R   AT+  + G          G  +     +TY+
Sbjct: 303 QDYINSILKRIINKHNLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYS 362

Query: 324 KGAD 327
              +
Sbjct: 363 HATE 366


>gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
 gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           20_3]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 85/291 (29%), Gaps = 27/291 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           Y           ++  S++   +      G     Y  I    +            S   
Sbjct: 14  YMACLREKK-RYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNT 72

Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQQFKSFWS 187
              ++  +R ++  AV        P L  +       KRK    R   +          S
Sbjct: 73  VSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAELEDQS 132

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
                        +SG+   D      +++++ I     QK+G++I +E+P G ++LL  
Sbjct: 133 LRRVQLTVRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLEE 192

Query: 248 TPIGKETFFINNDKQKMNATQ--------------FSIWFKAKATKAG--VNKSAHGVRK 291
                    +                         F+   K  A   G  +  +++ +R 
Sbjct: 193 LSACTAKESLYLFPFLSGRRTGEAAYKEYNRTLSRFNREMKLLARSTGVTLPVTSYTIRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             A+   +   +   +    G K++   + Y K     RL   N     SV
Sbjct: 253 SFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303


>gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756]
 gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 420

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 101/384 (26%), Gaps = 61/384 (15%)

Query: 18  HGKIIYYFRKGHGRRI-----RLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK-PTT 70
            G+  Y +    G+R      RL    +      A +S        +            T
Sbjct: 22  SGRYRYKYTDSLGKRKILYSWRLTEADKMPEGKRADLSLREKERKVQSLQMQGITGSNIT 81

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI---TTKHIRSGVESR 126
           +  L+  Y        +  N+  +++   + +   +        +     K     ++  
Sbjct: 82  VIELVERYLSLK--TGVKHNTLANYKFVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRD 139

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SS       +R  F+ AV  + +                ++  +  + ED  +F  
Sbjct: 140 GRGYSSIHSIRGVLRPAFQMAVDDDLILKNPFGFELGTVLVNDSQKRQAVSLEDEAKFLE 199

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRA-------GVQHLQNNIFSIKTQKTGTIIT 234
           F            AF  L  +GLR S+ C             +  N    +T++   II 
Sbjct: 200 FVKNDPHYNQYYDAFYILFKTGLRISEFCGFTVKDLDFKEDIINVNHQLQRTREMKYIIV 259

Query: 235 VELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +LL M                        + +       K      ++ ++ 
Sbjct: 260 STKTTSGTRLLPMEADVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEK 319

Query: 276 KATKAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               A               + H  R    T  A++G     L    G   +      YT
Sbjct: 320 YMQHAREKYNREHLLQLPPITPHVCRHTYCTNMANSGMNPKTLQYLMGHSDISVTLNIYT 379

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
                        + +S + ++ D
Sbjct: 380 HTGY-----DDAKKELSRLKEARD 398


>gi|159039223|ref|YP_001538476.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157918058|gb|ABV99485.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 296

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 96/286 (33%), Gaps = 20/286 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPS 131
           I+ Y +       +  +  S+ +   Q+       D  ++T   +       +   ++ +
Sbjct: 8   IASYERYHRARRTSPETVDSYVTTLRQLAGFCSGRDLAEVTRVDVEEFLIDAQEIGNSSA 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  +   ++R  ++W   +E V  NP   +  P   ++ I     + M            
Sbjct: 68  TVHKKFRNLRAFYRWCEVEEIVDSNPMARIAEPAVTSKPIPIVPADHMALLLKACGGKGF 127

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL 245
                  ++           + +  +  +   ++        K   I +V       + +
Sbjct: 128 TERRDTAMIRLWCEAGSPRVSEMVGITLDALDMRHDLVTLHGKGDKIRSVPFGAKTGQAI 187

Query: 246 AMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
                 +            ++      + ++      + +  +A + K + H +R  +A 
Sbjct: 188 DRYLRVRSKHRDAGRLEALWLAERGGALTSSGAYQMLERRCEEAKIPKINPHKLRHLAAH 247

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           + ADAG +  + MA +GW + +    Y + A   R   + +RR+S 
Sbjct: 248 LWADAGGSEGDAMALFGWSSAEMPRRYGRSAQVER-AQRAARRVSQ 292


>gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 430

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 92/332 (27%), Gaps = 26/332 (7%)

Query: 37  YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISF 95
                T + AY            +    R +    + L+  Y  S  +   L   +  ++
Sbjct: 100 RVRTPTRVAAYPLMRAAKAWLSFHRKLERPQEMWFEELLRAYSHSLVYNRGLVHRTVETY 159

Query: 96  ESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150
           ES     ++     + +   I+   + + ++ +   +    +      ++R   ++A  +
Sbjct: 160 ESKARTFLKFFSRSNHNLSGISLLDVDAFMQEKVMEEWKAEAIASHCQAIRSFLRFAESR 219

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGL 204
            +        ++ P+              Q       FK   +   + +         GL
Sbjct: 220 NWCDRGIHQGIKSPRVPRNTGESKGPTWPQVKKLLRSFKGQKASERRAKAMLMLCAIYGL 279

Query: 205 RCSDSCR---AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258
           R S+                   + ++ G        +    +LA     +         
Sbjct: 280 RASEVIGLQLEDFDWRNETFMVRRAKRGGVQHFPMEYEVGEAILAYLKQDRPRCASRLLF 339

Query: 259 ----NDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATY 311
                    ++ T        +    GV   +   H +R   AT     G++ H++    
Sbjct: 340 VSLRAPYVAVSTTSLWRAVGPRLRSFGVQLNHVGVHSLRHACATRLLHKGSSLHQIADFL 399

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           G + +     Y +  D   L      R+  + 
Sbjct: 400 GHRDLKSVSIYARC-DVRSLRKVAQFRLEGLK 430


>gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
 gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51]
          Length = 320

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  +N T      +  A +A + K+   H +R   
Sbjct: 214 PYEFRWHYLFPSFQLSLDPESDVMRRHHINETVLQKAVRRSAQEARIEKTVTCHTLRHSF 273

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 274 ATHLLEVGADIRTVQEQLGHSDVKTTQIYTHVLDR 308


>gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter
           jejuni RM1221]
 gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni RM1221]
          Length = 354

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  TKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059]
          Length = 200

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 81  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 140

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 141 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 172


>gi|221202027|ref|ZP_03575063.1| phage integrase family protein [Burkholderia multivorans CGD2M]
 gi|221204842|ref|ZP_03577859.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221175699|gb|EEE08129.1| phage integrase family protein [Burkholderia multivorans CGD2]
 gi|221178110|gb|EEE10521.1| phage integrase family protein [Burkholderia multivorans CGD2M]
          Length = 387

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 113/350 (32%), Gaps = 32/350 (9%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP----------- 68
           +     R      +   +P   T   A+++    S  +R +      +            
Sbjct: 15  RYQATIRIKGFPTLSRAFP-SRTEAEAWLAEHEASIHRRIHSAKIEAERQRIAAECSVQY 73

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR- 126
            TL  L+  Y  +      + + + +     + +++    D     +  + +    ++R 
Sbjct: 74  RTLGDLMRRYLATVTPSKRSAD-QETIR--MNGLLKHGIADCPIVNLDRQRVAEWRDARL 130

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              T  +  + +  +  + K  + +    +  NP L+V RP       R     +     
Sbjct: 131 QNVTGPTVRRDMILLAHVVKIGMVEWNTPLVENPFLTVRRPLEGPPRNRRMKSGEEPALL 190

Query: 184 SFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPD 239
           S   +   P L    E  L + LR S+  +    ++        +   K+GT   + L  
Sbjct: 191 SVCDDARAPYLRPIVELALETALRQSELVQLDWSNVSMSGRYAYLPMTKSGTARGIPLSS 250

Query: 240 GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
             +++LA  P     +            +      F   + +AG+ N   H +R  + + 
Sbjct: 251 RAVEILADLPAALDSDGNRAGPVFVGATSEAVKRAFIRASRRAGLANFRFHDLRHEATSR 310

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
             + G T  E+    G KT    E YT            +RR+    + D
Sbjct: 311 FFERGLTVPEVARITGHKTWTMLERYTHL-----QLADVARRLDGPKNPD 355


>gi|257465870|ref|ZP_05630181.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917027|ref|ZP_07913267.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690902|gb|EFS27737.1| tyrosine recombinase xerD-like protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 262

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              +Y         L+ NS  + +   +Q +    ++   ++T   ++S     +   + 
Sbjct: 7   WKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFFHLQEKHAS 66

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + ++S++V  ++   +  V  +  L   + +++ + I  + K+  +QF+  +    
Sbjct: 67  NTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRKEEDTILFFEKDVWEQFRRIFENNL 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +  FE L  +G++  +        +Q     I   +     TV       + L     
Sbjct: 127 RDKAIFELLYSTGMKPKEFLSLTYLQIQWEKQEIYFFQKKESRTVFFSHRAKEALWNYCE 186

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHELM 308
            K            +       FK    K +G+   + +  R   A     AG    EL 
Sbjct: 187 EKGMKEGRIWDF--SEKTLRNIFKKYREKISGLENMTIYSFRHTFAITLLRAGMPKSELQ 244


>gi|261416592|ref|YP_003250275.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373048|gb|ACX75793.1| integrase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326868|gb|ADL26069.1| site-specific recombinase, phage integrase family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 278

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 86/263 (32%), Gaps = 19/263 (7%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSA 133
           +Y K      LA  +  ++     +I       +   +T++ +R+     E+  +  ++ 
Sbjct: 9   DYLK-KDADELAPLTVRTYYWNLKKIALFEPGLECECVTSETVRNYKRYLETLHNKEATV 67

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTKEDMQQFKSFW 186
           ++ L+  R+          +  +P  +V+  +  +         ++      M+   +  
Sbjct: 68  VKALSVFRIFCNKMKADGVIHGDPFENVKVGRAYSRRGFLTLRELKHLYLSYMESHVALT 127

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                    F F  ++GLR  D        + +     +  KTG  + + +P     LL 
Sbjct: 128 RAEDDVMRVFLFSCFTGLRYGDLRTLDASEIFDWKIRKQMHKTGEAVYIPIPVQARLLLP 187

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304
                   F + ++      + F+   +  A K G  K  H    R   AT     G   
Sbjct: 188 NPLTSGRVFHVVDN------STFNRTLRKAAKKLGHYKHVHCHLARHTFATTCITIGIPL 241

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
                  G + +D    Y K  D
Sbjct: 242 PATSKLLGHRNLDTTLIYAKYVD 264


>gi|54295400|ref|YP_127815.1| hypothetical protein lpl2486 [Legionella pneumophila str. Lens]
 gi|53755232|emb|CAH16726.1| hypothetical protein lpl2486 [Legionella pneumophila str. Lens]
          Length = 413

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 110/346 (31%), Gaps = 30/346 (8%)

Query: 23  YYFRKGHGR-RIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPTTLKWL 74
           Y +R    R  I + +    +   A    +           PK +     +K+ +T+K L
Sbjct: 43  YRYRINGQRHFITIGHYPAMSLSEARKRFIDLSDIRHGEVNPKEQIAEQKQKEQSTVKNL 102

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I  +  +      A      ++     II   G+     + T+ I   ++    + +P  
Sbjct: 103 ILHWYTNYIEKHRAQ-PLQIWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPVH 161

Query: 133 AIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           A + L++++  F +AV +          +       +E+P+ +   +             
Sbjct: 162 ANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSE 221

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------QKTGTIITVEL 237
                 Q R A + +L +G+R  +   A                          I   E+
Sbjct: 222 EHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEM 281

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
               ++ L      +      +D+  ++            ++ G+   +AH +R+  AT 
Sbjct: 282 TKKVLRELKTHSDSEYVITGADDQSILSDRAMPRAVIRIQSRVGIPHWTAHDLRRTFATQ 341

Query: 297 SADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
             +A       +    G K      TY K     + +  ++   R+
Sbjct: 342 LGEALHVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWARL 387


>gi|254526258|ref|ZP_05138310.1| site-specific recombinase, phage integrase family [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537682|gb|EEE40135.1| site-specific recombinase, phage integrase family [Prochlorococcus
           marinus str. MIT 9202]
          Length = 321

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 92/319 (28%), Gaps = 19/319 (5%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G       R+ +    R           ++  A+   + K       +  P TL   I
Sbjct: 6   RSGSGWQVLIRRKNYVGPRSKTFLSRDLAQSWADAVEERSKKV-----FKDIPITLGEAI 60

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +EY         +     + +           GD   + +  +H     + R  K  P++
Sbjct: 61  NEYINGPLLMHRSA---ENEKYPLRVTAESWLGDIPLKDLQIRHFAVWRDERLLKVKPNT 117

Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSE 188
            ++ L  +RVL  W   +    +  NP   +            +T +D Q+         
Sbjct: 118 VMRELRILRVLIDWVRDERGAEIKDNPARQLRVRGTGDARAPFFTDQDEQRLLFELSQMS 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                   +  L +G R S+      +++      I   +     T       +  L   
Sbjct: 178 NKNHLRLTKLALTTGFRRSELLSLTWRNIDLKKRIIYIHRKNCAATDNSSAPRLVPLQGK 237

Query: 249 PIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
                      +     +        F     KAG+     H +R  + +    +G  A 
Sbjct: 238 AKKILEELSERHGKIIDLTKGAARHGFDKARQKAGLKTLRFHDLRHIAISRMWSSGMNAL 297

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G + +     Y+ 
Sbjct: 298 EISACSGHRDIKMLMRYSH 316


>gi|114776689|ref|ZP_01451732.1| Phage integrase [Mariprofundus ferrooxydans PV-1]
 gi|114552775|gb|EAU55206.1| Phage integrase [Mariprofundus ferrooxydans PV-1]
          Length = 392

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/300 (8%), Positives = 73/300 (24%), Gaps = 32/300 (10%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111
            +   R   +S        +     +           +    +    +  +  + G ++ 
Sbjct: 70  RAAEFRPLPSSSHTGTPLFRDFAEIWMSENVVR-WKKSVIKGYRYTLENPLFPRFGHYEV 128

Query: 112 RKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
             IT   I +              K +PS     +  +R +   A  +           +
Sbjct: 129 GAITKADILAFRAELSTTLGKGGIKRSPSRINNIMKPLRGILGEASERYDFPNPFRSIKK 188

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-- 220
            P+ K E          +                    ++G+R  +      +++  +  
Sbjct: 189 IPEGKKEIH---PFTLDEVMLLCKKIRGDYHNYLVTRFFTGMRSGEIDGLKWKYVDFDLG 245

Query: 221 ----------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA---- 266
                           +   +   + +     + L        +  +    +        
Sbjct: 246 IIAVRETVVDREEDTPKTQSSYRDIMMLPIVREALLDQRKYSGSMELVFCSRSGTPLHQN 305

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                 ++    + G+  +  +  R  +ATI   +G     +    G    +     Y++
Sbjct: 306 NFRRRVWRPLLNRLGLPIRRPYETRHTAATIWLASGENPEWVARQLGHTNTEMLFRVYSR 365


>gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
 gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33]
          Length = 328

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 86/300 (28%), Gaps = 46/300 (15%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITT- 116
              ++   T K +   Y+        +  +   +  +    +        DF   ++   
Sbjct: 15  QRKKRNRDTKKTIFEIYK--------SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPL 66

Query: 117 ----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                      +I    E RK   +S    L++++ L+K             + + +  R
Sbjct: 67  MQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELETNGLKNPVKYIKLFKVNR 126

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             E I   + +D+++    +   S    +       L Y+G+R  +      +H      
Sbjct: 127 NIENILKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREN 186

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------------------KQK 263
               +   T    ++     K L       + + ++                        
Sbjct: 187 EYFFKLIETKSGKDVYKPIHKSLVKKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSP 246

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++    +   +      G + S H +R   AT  + +GA   E+    G       E Y 
Sbjct: 247 LSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYI 306


>gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 186

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 11/152 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           + R   E +  +GLR S+     ++HL  +        K      + +    +  +    
Sbjct: 22  RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 81

Query: 250 IGKETFFINNDK-------QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
             +  F  + +        ++++A      F     K G+  +   H +R   AT   ++
Sbjct: 82  DLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLES 141

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                 +    G   +   + YT   D   L 
Sbjct: 142 SGDLRGVQELLGHANLSTTQIYTH-LDFQHLA 172


>gi|297193576|ref|ZP_06910974.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718147|gb|EDY62055.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 457

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/376 (13%), Positives = 91/376 (24%), Gaps = 62/376 (16%)

Query: 8   PPFVTKERT--RHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           P    ++    R+G   +    +    G      +P     +     A   +   R    
Sbjct: 54  PDGKVRKVKTERYGSGLRYRARYVGPDGTEKSKSFPDRQKRLADQWLAHIEADMARGQYI 113

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
            PR    T +     +  +        N++ S ES          G          HIR 
Sbjct: 114 DPRAARITFQQYAERWVAT---QGADPNTQASMESQLRLHAFPYLGSRPLGSFQPAHIRD 170

Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            V   +      S A    +++R     AV   ++  NPC +        +  R      
Sbjct: 171 WVRQLQENGVRGSYARTIYSNVRAALSAAVDDGHLPRNPCAARSVRPPTVDDKRVVPWTP 230

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
            + F    +   + +   +     GLR  +     V  +     ++   +          
Sbjct: 231 ERVFAVRAAMPERYQAMVDLGGGCGLRQGEILGVAVDAIDFESDTLHVVQQLKLSRSKAV 290

Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------------ 271
                 G +  V LP      L           I    +  +    +             
Sbjct: 291 FAPPKGGKLRDVPLPGPVADALRAHMKRFPPVEITLPWKVADGPPVTKQLIFTGPRGGHV 350

Query: 272 --------WFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMA 309
                    +K     A V                  H +R F A++  DAG     L  
Sbjct: 351 RRTSLNEEAWKPALAAACVIPVPERGQPYAESRENGMHALRHFYASVLLDAGENIKALAE 410

Query: 310 TYGWKTVD-QAETYTK 324
             G          Y  
Sbjct: 411 YLGHSEPGLTLRVYAH 426


>gi|16420406|gb|AAL20787.1| putative phage integrase protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|301158393|emb|CBW17900.1| Integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|323130155|gb|ADX17585.1| putative phage integrase protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 88/281 (31%), Gaps = 22/281 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           T+   I  Y       +L+VN+     +    +  K G+    ++TT+HI   +ES   +
Sbjct: 14  TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 73

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              + A    + +  +F+ A+ + ++  NP  +   P+ K    R   +       +   
Sbjct: 74  GKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEH 133

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------I 233
             +   LA +  L +G R  D        + +N   +   KTG                 
Sbjct: 134 MPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLR 193

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHG 288
              + D    +     +       N+    ++    +  F      +GVN      + H 
Sbjct: 194 LGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHE 253

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +R   A                 G  + +  + Y    D  
Sbjct: 254 IR-SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 293


>gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14]
 gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14]
          Length = 382

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 108 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 167

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 168 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 226

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 227 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 286

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     +   + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 287 AECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 346

Query: 311 YGWKTVDQAETYTKGADR 328
            G    +  + Y +  D+
Sbjct: 347 LGHADTNVTKHYARVLDQ 364


>gi|268319636|ref|YP_003293292.1| hypothetical protein FI9785_1163 [Lactobacillus johnsonii FI9785]
 gi|262398011|emb|CAX67025.1| int [Lactobacillus johnsonii FI9785]
          Length = 366

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/350 (9%), Positives = 81/350 (23%), Gaps = 37/350 (10%)

Query: 14  ERTRHGKII-----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            + +  K       +Y        I                 L         +       
Sbjct: 4   YKDKKTKTWFVKRSWYDAHKKRHYITRRGFKTKREAEKVNVKLAAQVNDGIDVTR----D 59

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126
                  +E+ K+    S+A N+   +      +    G    + I     +  +    +
Sbjct: 60  PVFADYYNEWVKTYKENSVAPNTLRQYILASTHLQHYFGQTTIKSINRSKYQQFINWFGK 119

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            H  S+ ++     +     A+    +  N    +       +  +    +     + F 
Sbjct: 120 NHAKSTVVKTNRFYKSCVSSAIEDGIITRNFTDHITLAYNNDKAFKVTYLQADDITRLFN 179

Query: 187 SEGSQPR------LAFEFLLYSGLRCSDSCRAGV--------------QHLQNNIFSIKT 226
                 R           ++ +GLR S+                      + +      T
Sbjct: 180 YLYDHRRPQYTTSYMLMLMIVTGLRESEVAGLTWNNIYFSENLIKVEKSWVYSQKDYGPT 239

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV-- 282
           +   +   V +P   M  +       +         K+           +       +  
Sbjct: 240 KNETSQRIVSVPQIMMDCIKELKGNHKAKVFWYPSYKIFPGHKSLGAGLQIALKNLNISA 299

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                H +R     +   A    +++    G  T     +TY     + R
Sbjct: 300 PGFHPHSLRHSQVALLLQANIPIYDIAKRLGHSTTRTTEQTYAYEFKKHR 349


>gi|103488014|ref|YP_617575.1| phage integrase [Sphingopyxis alaskensis RB2256]
 gi|98978091|gb|ABF54242.1| phage integrase [Sphingopyxis alaskensis RB2256]
          Length = 463

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/371 (11%), Positives = 98/371 (26%), Gaps = 50/371 (13%)

Query: 24  YFRKGHGRR------IRLPYPHESTFIPAYMSAL-----TGSTPKREYINSPRKKPTTLK 72
            +R   G R      + +      T   A   A                 + ++    + 
Sbjct: 48  RYRAEGGGRGAPKRHVTVGRFGPLTVEMARRQAKQLLAKATVGEDPAKARNDKRGEMRIS 107

Query: 73  WLISEYRKSAHWGSL--------AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123
            LI  Y K   +              ++    +     ++   G+    ++ T  I    
Sbjct: 108 ELIDLYEKQGCYIQRGKRQGVPMKPRTKQYTLARLRHHVVPLLGNRRVTEVNTGDIERFF 167

Query: 124 ESRKHTPSS-------------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
              +   ++                   A +    +  +F +A R E V  NPC +    
Sbjct: 168 RDVETGKTARDDKIGPRKRIVVRGGEGAARKVFRDLSAVFSFARRSEIVTRNPCETAAVK 227

Query: 165 KRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           K      R  T E++++F              +        + +G R  +      Q + 
Sbjct: 228 KTDNHKERFLTLEEVKRFGEGLRELEKDGTNRKALDIMRLWMLTGCRREEIASLKWQEVD 287

Query: 219 NNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                ++   +     +          +  +   G   F     +       +   +K  
Sbjct: 288 FEHGCLRFGDSKTGKAVRPIGAAAIAVIKTIEQTGDSEFVFPAGEGDSYFRGYKTPWKKV 347

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGI 333
             KA +   + H +R    + +  +G       A  G         Y     +   R   
Sbjct: 348 VEKARLPGVTPHTLRHTMGSTAISSGEAMAFTGAILGHTNPRSTAIYAHVQHSPARRAAD 407

Query: 334 KNSRRISSVVD 344
           + + RI++ + 
Sbjct: 408 RVAERIAAALA 418


>gi|218889533|ref|YP_002438397.1| Integrase [Pseudomonas aeruginosa LESB58]
 gi|218769756|emb|CAW25516.1| Integrase [Pseudomonas aeruginosa LESB58]
          Length = 349

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 97/356 (27%), Gaps = 48/356 (13%)

Query: 1   MTPSLR----LPPFVTKERT--RHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSA 50
           M P       LPP + K     + GK+   YY+  R   GRR  +P   +        + 
Sbjct: 1   MRPRSNKNRGLPPRMIKRTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWAK 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           L           +      T+  L+  + +       A  ++  +     Q++    +  
Sbjct: 61  LER--------KAVPPTTRTVGDLLRRFERDVVPTK-APKTQKEYSKMIRQLLGAFDEAP 111

Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
              IT   I    ++R      A + +T +   F + + +E+   +        K+  E 
Sbjct: 112 VEDITPSTIAQYRDARTAKVR-ANREITLLS--FAYNMAREWGITSMENPCRGVKKNKEQ 168

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------FSI 224
            R     D      +       R+  +    +G R +D  +     +  +        + 
Sbjct: 169 PRDVYVTDEVWKALYEKAPDDLRVTMDLAYLTGQRPADVRKLRKNDVSGDYLLVGQNKTS 228

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--- 281
           +  +               L+            N   Q M        F      A    
Sbjct: 229 RKLRIRLRRADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFDTARKAAADEA 288

Query: 282 ------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
                       +      +R  +A+       +  +     G  T +  +  Y +
Sbjct: 289 IKAGDQDLAREIMQFQFRDIRPKAASDI----ESLADASDLLGHTTQEITKRVYRR 340


>gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  S+ S    +           D  + ++T   I    +
Sbjct: 109 LDMLIKE-KESHVGVDIRKESMASYHSTRIHLQEFIQKKYKVSDLAFSQLTENFIHEFQQ 167

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    +      +  K   +  +   KE ++
Sbjct: 168 YFLGECGFQESSFYNVATHLKTVCRLAYREGLADVLLFDKAKISKGNKKLPKALDKEALE 227

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 228 KLKALHFEELEGEMETARDNFLFACYTGAAYCDLMELNKSHLVRDDKGSLWLKFN--RHK 285

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 286 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 345

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 346 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 385


>gi|139438761|ref|ZP_01772245.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
 gi|133775841|gb|EBA39661.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC
           25986]
          Length = 435

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 103/396 (26%), Gaps = 72/396 (18%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           ++GK + Y +    R I     +   +     +AL     + E        PTT+     
Sbjct: 37  KNGKRVRYLKTPK-RTIHCKSKNPRNWPGEVANALDAYRKELETYEPAGDMPTTVSGYAE 95

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---- 132
           ++ +       +  S    E     I    GD     +    I+        T       
Sbjct: 96  DFHRLRESSFGSPLSFQREEYDVRHIRELFGDMPLGALRPDEIKRAYAEAISTGRFTEAE 155

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
             +    ++ + + A+  E +  NPC+SV+ PK           +++ +F          
Sbjct: 156 IRRIHVKLKQVMQDALENELIGRNPCISVKLPKPDLRVRNFLPPDELPRFTKCLLSEPMG 215

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------GTIITVEL 237
              +    + + GLR  ++     +        I+                  +   + +
Sbjct: 216 PMTVCTMLIFHLGLRKGEALGLCWEDYDPEAMEIRIVHQYTNDKTLRAPKSEMSRRILSI 275

Query: 238 PDGFMKLLAMTPIGKETFFI--------------------------NNDKQKMNATQFSI 271
                  L    + +   F                           +    + +   +S 
Sbjct: 276 DSSLAAYLNDWKMRQRNLFEQRGLRQRNSDPIVHALSPHKDENGNLHVSITRPDGHNYSR 335

Query: 272 WFKAKATKAG----------------VNKS--------AHGVRKFSATISADAGATAHEL 307
           WF+      G                ++           HG+R  +AT           +
Sbjct: 336 WFRDFCVDNGYGEYANVTSQFERNGKLHTRGTGYSGLIPHGLRHTAATALVANNVDLKTV 395

Query: 308 MATYGWKTVDQAET-YTKGAD-RIRLGIKNSRRISS 341
            A  G  +       YT       R   +   ++S 
Sbjct: 396 QARMGHASASTTANFYTHAIRANDRNAAEVFEKLSE 431


>gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2]
          Length = 305

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 70/300 (23%), Gaps = 48/300 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HT 129
           L+   R  A     ++ +  S+  +  + I        R +    IR  +          
Sbjct: 6   LLDNVRNVARLKHFSLRTERSYVYWIRRFILFHDKRHPRDMAEPEIRDFLSHLASHDNVA 65

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------------------------- 164
             +  Q L+++  L++  +      ++     +RP                         
Sbjct: 66  APTQNQALSALLFLYRDVLGIRLRYMDDIERAKRPTRVPTVLTRSEVLALLGKLTGTFYI 125

Query: 165 ------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-----LYSGLRCS 207
                                       Q      +G++ R+          L   L+  
Sbjct: 126 MTSLLYGSGLRLMECLRLRVKDLDFHYNQITIRDGKGNKDRVTMLPAPLKPALELHLKRV 185

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                           +                +  +        +       +  ++ +
Sbjct: 186 KLLHEEDLSGGFGEVFLPHALDRKYPNASREWAWQYVFPAGKRSIDPRSGKQRRHHVSES 245

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 K   ++AG+    S H +R   AT   + G     +    G K V     YT  
Sbjct: 246 VLRRVVKDAVSRAGIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305


>gi|291438313|ref|ZP_06577703.1| phage integrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341208|gb|EFE68164.1| phage integrase [Streptomyces ghanaensis ATCC 14672]
          Length = 389

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 96/346 (27%), Gaps = 33/346 (9%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G+    +    G     P+  E+T       A   +  +R     P       +    +
Sbjct: 19  SGRYQARYPGPDGVMRPAPFTFETTADADDWLAEKQTEIRRGEWRDPEAGAVGFRAYADK 78

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
           + +      LA  +R  +    D+ +    D D  +IT   +R     R       +   
Sbjct: 79  WVEE---RELAPLTRDLYRYLLDKHLTAFADLDLDEITAPRVREWRAERLRITGAKTITA 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    ++ + + AV  E +  NPC      K K    R  T   +       + G + RL
Sbjct: 136 KAYRLLKAIMETAVDDELIQRNPCRIKGAGKEKAAERRIATVAQVDA--LADAVGMRWRL 193

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------------- 241
                 Y  +R  +      + +  +   ++ +                           
Sbjct: 194 MVYLGAYGPMRPEELAGLRRRDVDVDNLRVRIRLAEPERMNGRRVQGDTKSEAGTRTVIL 253

Query: 242 ----MKLLAMTPIGKETFFINNDKQ------KMNATQFSIWFKAKATKAGVNK--SAHGV 289
                + L            +              + F   ++      G+ K    + +
Sbjct: 254 PAFLRRELRWHLESYAEPGPDGLVFVGEKGAPFRRSTFGRKWRRAREVVGMPKGFRFYDL 313

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           R    T+S  +GAT  + M   G  +   A  Y    +  +  +  
Sbjct: 314 RHTGHTLSTRSGATLKDTMVRAGQSSEKAALIYQHSDEERQEEVAA 359


>gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002]
 gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002]
          Length = 274

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +      T +          +   + T     FK    +A ++K  S H +R   AT 
Sbjct: 172 FAWQYAFPSTALRPWGDSGRLVRWHTSDTTIQRAFKKAVAQAQIHKHASVHCLRHSFATH 231

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
              AG     +    G +++     YT      R
Sbjct: 232 LLAAGTDIRTIQLLLGHRSLQTTMIYTHVLQATR 265


>gi|16801672|ref|NP_471940.1| hypothetical protein lin2610 [Listeria innocua Clip11262]
 gi|16415147|emb|CAC97837.1| lin2610 [Listeria innocua Clip11262]
          Length = 384

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 93/347 (26%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++ ++GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKMKNGKYTVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQVEHDSNSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K   S + K+      + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  NFKEFYSLFMKTFKENKSSQSTINLYDLAYNQFVNYFDEKIKLNSIDAVQYQQFINHLAL 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFK 183
            +  ++       +R +F  AV   Y+  NP L            +     T +     +
Sbjct: 118 DYAVATIDTRHRKIRAIFNKAVHLGYMKKNPALGAHISGHDIAKTKAQYLETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKT 229
                 S  R      + +G+R  +      + +                   +    KT
Sbjct: 178 ELAKLHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSISVNKAWDYKYTNTFTDTKT 237

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAK 276
                + + +  ++ L         +   +               + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLAWHADYMKEHAIENPVMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            T       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CTTINSETVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|309801163|ref|ZP_07695292.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
 gi|308222052|gb|EFO78335.1| site-specific recombinase, phage integrase family [Bifidobacterium
           dentium JCVIHMP022]
          Length = 332

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 91/324 (28%), Gaps = 49/324 (15%)

Query: 65  RKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           R+   TL      Y +       +A  +    E  F  +    G     ++T + +    
Sbjct: 8   RRTSYTLAEYCDRYLEMRRAKKEVAETTIGKQEWQFKAVCHHIGHVKLEEVTPRMLNDVY 67

Query: 124 ESRKHT---------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +              S   Q   ++ ++F+ A+++  +  NPC   + PK  T+  +  
Sbjct: 68  VAMMQGDTLSGRKSGGSYVNQIHDNITLVFQHAIKEGILVSNPCDKADPPKMDTKPKKAI 127

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
             + +++  +          A+   +  GLR  + C      +      +    +     
Sbjct: 128 HPDKVRELVAELDPTDPHECAYLLAVTLGLRRGEICGLSWNDIDFERNIVDISHSYDNLG 187

Query: 232 ----------IITVELPDGFMKLLAMTPIGKETFFIN----------------------- 258
                     +  + L       L      +   F                         
Sbjct: 188 NLKGTKIKAGMRLLPLSPVTKDALLKMKEAQAAQFAKTNSFRKPEEGYLEQTEDGPVIAG 247

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +  +++ +   S W+     + G+   + H +R    T+ A  G     +       +  
Sbjct: 248 HYGERVQSGTMSRWWSVDRKEFGLEGYTLHELRHTYLTMLAMGGVHPKVMQELASHYSSQ 307

Query: 318 QAE-TYTKG-ADRIRLGIKNSRRI 339
                YT    D  R  +    ++
Sbjct: 308 ITMDIYTHVNMDAKRAAVDAVSKL 331


>gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 409

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 87/330 (26%), Gaps = 34/330 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYF 99
             Y   L         +   +         TL  LI  Y        L   +  ++ +  
Sbjct: 81  ETYQELLLQKKWITAELLKAKVTGMDQAEFTLCKLIE-YHNQEQGQILEPGTMKNYYTTE 139

Query: 100 DQIIRKSG------DFDYRKITTKHI-------RSGVESRKHTPSSAIQFLTSMRVLFKW 146
             +           D    +++ K I       R+    +     +    +  +    K 
Sbjct: 140 KYLKEFLKVRFKTSDKYLSELSYKFITDFEYYLRNRKPEKGQKKLTTNGLMKHLERFCKM 199

Query: 147 AVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLY 201
                +    +       + K         TK+++++ +S      + ++    F F  Y
Sbjct: 200 VNMAVRLEWIVRNPFHAYQLKFDKVNRDYLTKDELERIESKEFHIVRLQVVQDLFVFSCY 259

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFF 256
           +GL   D       +L           T        + V L    ++++       +   
Sbjct: 260 TGLAYVDVYNLTPANLVKGQDGNLWIMTSRQKTNTAVKVPLLPKALEIIDKYKGHPQAIA 319

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGW 313
                  +   + + + K  A    +    + H  R   AT      G     +    G 
Sbjct: 320 EGKLLPVLTNQKLNSYLKEIADMCAILKPLTFHIARHTFATTITLTNGVPIESVSKMLGH 379

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRISSVV 343
             +   + Y K  +       +  R++  +
Sbjct: 380 TKLSTTQVYAKVVESK--LSDDMARLTERL 407


>gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1]
 gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1]
          Length = 407

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR- 126
            +  I  +       + A  +         +        G      IT +HI S V    
Sbjct: 110 FRQAILSFTDHCKKRNNADQTIQRRIRVIHKFFEHLTGSGVDACNDITPQHISSFVTGLA 169

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS 184
            ++  ++ Q+L S+RV FK          +   SV       +   P  W+  D++Q  S
Sbjct: 170 GYSKKTSDQYLESLRVFFKSLYFSGQRKDDLSKSVPTLYYPKQDRIPSVWSANDIEQLLS 229

Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIIT 234
                  +G +       +   GLR SD     ++++         +           I 
Sbjct: 230 VIDRGNPKGKRDYALIFLVTQLGLRTSDVLNLKLENINWSESRIEFVQQKTGISVNLPIV 289

Query: 235 VELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVN------KSA 286
            +L    +  L          ++   + +                 KAG+          
Sbjct: 290 EDLGMAIIDYLKYGRPKSNEPYLFLKHIQPFDRMKNGHYLITQYLVKAGIPLKTAKHHGL 349

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           H +R   A+   +       + +  G  TV+  + Y  
Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLH 387


>gi|324114058|gb|EGC08031.1| phage integrase [Escherichia fergusonii B253]
          Length = 392

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 95/343 (27%), Gaps = 25/343 (7%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  +  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEERDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A         ++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVIFPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
                H      G +       Y K    +  R   + ++ ++
Sbjct: 341 MNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKL 383


>gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 294

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 77/261 (29%), Gaps = 11/261 (4%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129
               I ++  +     +  ++  +   +   + ++K  D     +T+K +      +  +
Sbjct: 16  WHEAIRQWEMNLRARGMKESTVETRVKHLRSLALQKVADTPM-GVTSKLLVQWAGVKNWS 74

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           P +   +  S+   F + +          +     +          +   +     +   
Sbjct: 75  PETRHSYYMSLITFFHYYLPTGVENPTKEICHSISRPSPVPRPAPEEVIREALAKAYKLR 134

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTGTIITVELPDGFMKL 244
             +P +        GLR S+     +     H+ N    I  +     +          +
Sbjct: 135 DQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGNRWLVIHGKGGKQRVLPCPETLAHAI 194

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAGAT 303
            +++       F       ++    +        ++    + H +R   AT++  + G  
Sbjct: 195 KSVSSDDNGWVFPGKIDGHLSPRWIAKLATRVLAES---WTLHTLRHRFATVAYNEGGHD 251

Query: 304 AHELMATYGWKTVDQAETYTK 324
              +    G + +   + YTK
Sbjct: 252 LLTIQQAMGHENIATTQRYTK 272


>gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 459

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +     + K+       +            K  A  AG++K  + H +R   AT 
Sbjct: 356 WIWQYVFPTDKLVKDPRSEAFRRHHWGERVIQRAVKDAAMAAGIHKRVTPHVMRHSFATH 415

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G     +    G  +V+    Y    +R
Sbjct: 416 LLEDGYDIRTVQELLGHASVETTMIYLHVMNR 447


>gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 130

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 18  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 77

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 78  TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 109


>gi|126700774|ref|YP_001089671.1| phage integrase [Clostridium difficile 630]
 gi|115252211|emb|CAJ70050.1| phage integrase [Clostridium difficile]
          Length = 388

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/360 (10%), Positives = 89/360 (24%), Gaps = 50/360 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+ +R  +  ++         L     +    +       TL+     +        L 
Sbjct: 30  DGKPLRKEFYGKTQ--KEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFEYRIKDLK 87

Query: 89  VNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVL 143
             S   +ES +   I+    G+   + +   HI+        +     +  Q  T ++  
Sbjct: 88  PKSFERYESIYRNYIKDTDLGNVKLKYLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTC 147

Query: 144 FKWAVRQEYVAINPCLSVERPKRKT----------------------------------E 169
              A +Q  +  N C  V  P  K                                    
Sbjct: 148 LSEAEKQGLIQRNYCTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTG 207

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKT 226
                          F       +   +   +   +G R       G +   +       
Sbjct: 208 LRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFIDKTGNRELKVLEQGPKTSNSYRTVPIP 267

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGV-N 283
           +     +     +    +L    +     ++  ++  +           K+      +  
Sbjct: 268 KDVLNKLKEHKVNQNTDILKAGELYINNNYVFCNELGIPIDDKRPLRNLKSILNSLNIEP 327

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSV 342
              HG+RK  AT   +       +    G   +      YT+  +  +  ++   ++  +
Sbjct: 328 IKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKK--VEAVEKLDKI 385


>gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   +    +       +  ++ +      K     AGV K  S H  R   AT 
Sbjct: 74  WRWQYVFPASKRSTDPRSGVIRRHHIDESSLQKAVKRAVILAGVEKNVSCHTFRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G K V     YT   
Sbjct: 134 LLEAGRDIRTIQELLGHKDVSTTMIYTHVL 163


>gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823]
 gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823]
          Length = 404

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 111/348 (31%), Gaps = 56/348 (16%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKRE------YINSPRKKPTTLKW----------- 73
           +RI+              + ++    + +        ++      T+K            
Sbjct: 50  KRIKARGSDSKETASRINAQISKRFSEIQQEVISLETSNRNVSIKTIKDKVIGKKSMDFF 109

Query: 74  -----LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124
                +   Y   +  G+ +       +   +++ +      +  IT K + +       
Sbjct: 110 EFANSVTESYLTDSKIGTYSKT-----KGIIEKLKKYDSSLSFIDITPKFLTAYEAYLRT 164

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183
              ++ ++    L  +R +F  A +Q+ + ++    ++   +         T+++++ F 
Sbjct: 165 KLNNSTNTIHTNLKFIRTVFNKAFQQDIIELSSSPFLKFKMKTEKVQRDYLTEDELKIFA 224

Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
              ++G         +        GLR SD  +    H  ++  +   +KTG+ I++++P
Sbjct: 225 EVDTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHFDDSHINFTIKKTGSQISIKIP 284

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-----------------KAKATKAG 281
           +  + ++    + +              T                       K  A  A 
Sbjct: 285 NIALNIIEKYNLTQSEKTSYIFPMLPEDTYLRDAIGQDKAISSATAVINKNLKTLAKLAK 344

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           + K  S H  R   AT +   G +  ++    G   + + + Y K  +
Sbjct: 345 IEKNISFHISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVN 392


>gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 415

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 100/314 (31%), Gaps = 27/314 (8%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS----- 106
              +  ++   ++   +  L  ++            + N+ I +E+              
Sbjct: 94  KQIKAELSGSVEEKRMVLQLFQQHNDRVRALIGKEFSKNTYIRYETSLLHSRAFIRWKYQ 153

Query: 107 -GDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             D +  ++    I       K       ++ +++L + + +    V++ ++  +P +S 
Sbjct: 154 CDDLEITQLDFDFIADYEFWLKSQRGCNHNTTMKYLANFKKIVLSCVKRGWLPRDPFVSF 213

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           +   +        ++ ++    S     ++    R  F F  Y+GL  +D  +     + 
Sbjct: 214 K-LGKHDVDREVLSEAELFSIMSKKMPTTRLDQVRDIFVFCCYTGLSYADVYKLKRSEVI 272

Query: 219 NNIFSIKTQKTGTIITVELPDGFM-----KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
             +   +        T       +     K+L       +    +     ++  + + + 
Sbjct: 273 LGVDKNRWITLKRQKTDTASRIPLLDSAAKILDKYKDHAQCAVADQLLPVLSNQKMNSYL 332

Query: 274 KAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K       +++  + H  R   AT      G     +    G K +   + Y K  D+  
Sbjct: 333 KEIGDLCHIDRNITFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKK- 391

Query: 331 LGIKNSRRISSVVD 344
              ++ + + +V+ 
Sbjct: 392 -VGEDMKALGAVLA 404


>gi|148284918|ref|YP_001249008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284938|ref|YP_001249028.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285074|ref|YP_001249164.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740357|emb|CAM80790.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740377|emb|CAM80821.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740513|emb|CAM81084.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 414

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 14/281 (4%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFD 110
                R      +    T K L  +Y +        + +    E+        +   +  
Sbjct: 107 EENENRIKERERKANDITFKELCYKYIEEYA----KIYTINWKENADRVHTYAQALYEKK 162

Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             KI    I             ++A   L ++R +F  A++   +  NP L +E+ K + 
Sbjct: 163 ISKIRMSDIEPIFNDISKEGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQA 222

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIK 225
              R    E  +  +    E S   R      LY+G R S+       ++      + I 
Sbjct: 223 RERRLSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIP 282

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVN 283
             K G    + L D  M++L    +   + ++       +      +  +K    KA + 
Sbjct: 283 KTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIK 342

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               H +R+  A+   DAG +   +         +    YT
Sbjct: 343 NFRIHDLRRTFASCMWDAGESQRTISIALNHINPNSTIPYT 383


>gi|145224480|ref|YP_001135158.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145216966|gb|ABP46370.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 379

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 99/352 (28%), Gaps = 32/352 (9%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---KPTTLKWLISE 77
               +    GRR + P    +        A   S    +    P       TT      +
Sbjct: 25  YRARYFGPDGRRHKAPVLFLTKTDARAWLAQRHSEIVAQQWTPPNAVEVPKTTFTEYADQ 84

Query: 78  YRKSAHW--GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSA 133
           +  +       L   +R  +++  D  I    G      IT   +R          P+  
Sbjct: 85  WLLTRQVAGRPLKDRTREHYQALLDDHITATFGALPLASITADDVRQWYARTLTDKPTMR 144

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
                 +R +   AV    +++NPC S+          +       +      +  +Q  
Sbjct: 145 SHAYGLLRTILATAVSDGKISVNPC-SIRGAGTAKRVHKVRPATVGEIGTIADAMPAQWS 203

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           L      +  +R  +      + +           ++     G  +T    D  ++ +A+
Sbjct: 204 LMVLLAAWLAMRFGELTELRRKDIDLADEVVRVRRAVVRTDDGFKVTTPKSDAGIRDIAI 263

Query: 248 TPIGKETFFINNDKQ----------------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            P        +  +                  +        F     +A   +   H +R
Sbjct: 264 PPHLIPPIEAHLSQHVGAKADALLFPAVGGGHLAPATLYRRFYTARERANRKDLRWHDLR 323

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341
              A ++A  GAT  ELMA  G  T   A  Y   A  R R       +I+ 
Sbjct: 324 HSGAVLAAATGATLAELMARLGHSTPQAALRYQHAAQGRDRQIAALLSKIAE 375


>gi|228956429|ref|ZP_04118237.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228803247|gb|EEM50058.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 322

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 77/287 (26%), Gaps = 28/287 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+    +   + +  ++T K IR+     +  
Sbjct: 24  LVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKNLTELTRKDIRNLSIIFQEM 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T  +  Q     
Sbjct: 84  GMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPIREITFINDDQINWLI 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVELPDG 240
            E  +          +    S + +  V  +Q          ++   K G    +     
Sbjct: 144 DELLEKEKYMLATYLTLSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYYNPR 203

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ---------FSIWFKAKATKAG------VNKS 285
             K + +    +    I +   ++             F+ W K  A             +
Sbjct: 204 VQKCIRLYIDQRGKDAIPDLFVRVYKNGERRQLNKSVFNYWCKIFAKMLNEKEGKEFKVN 263

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H  R          G    +L +      +   E+Y K      + 
Sbjct: 264 PHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 310


>gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 318

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 91/294 (30%), Gaps = 23/294 (7%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
             +   + +   +  +     S++      G++   +   ++     + +   D    + 
Sbjct: 5   AKEPRVVINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEF 64

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEG 170
                +  +      H   + + F   ++     AV +  +  +P     ++  + + + 
Sbjct: 65  DRVSYQKLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKK 124

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +   + ++    +       P   +  LL   +GLR S++             ++   K
Sbjct: 125 TKYLNQFELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNK 184

Query: 229 TGTI---------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           T                    V+L    +  L++               K+  +  +   
Sbjct: 185 TWNYKNGGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGIL 244

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
                +AGV   S HG+R   A++   AG +   +    G  +++  + TY   
Sbjct: 245 ARHCKQAGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV 298


>gi|168490119|ref|ZP_02714318.1| integrase [Streptococcus pneumoniae SP195]
 gi|225855754|ref|YP_002737265.1| integrase [Streptococcus pneumoniae P1031]
 gi|183571505|gb|EDT92033.1| integrase [Streptococcus pneumoniae SP195]
 gi|225724627|gb|ACO20479.1| integrase [Streptococcus pneumoniae P1031]
          Length = 382

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGFTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSILLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6]
 gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6]
          Length = 343

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/329 (10%), Positives = 78/329 (23%), Gaps = 44/329 (13%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
            Y     G+R+R           A+   +T     + +          L  LI  +    
Sbjct: 18  CYLNGRQGKRVRKR-FATKGEAAAFERFVTREIEDKPWEGDKPDHRR-LTQLIEIWFTRY 75

Query: 83  HWGSLAVNSRIS----FESYFDQ-------IIRKSGDFDYRKITTK-------HIRSGVE 124
                   +  +    +             +        Y +  ++        +    +
Sbjct: 76  GV------TLANGAVVYSKLLKMSDAMGNPVAPLLNAKLYSEFRSQRMHGQISFVDHRWQ 129

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181
               + ++    L   + +F          +   +   +P +  E    +  E       
Sbjct: 130 KGAPSIATLNSELARFKAVFSKLKELGEWKLANPVEEVKPFKDHERSMAFLHEGQISLLL 189

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                          +  L +G R +++ +     L     +    KT    +V + +  
Sbjct: 190 ELVAQHNRKDMLKIVKLCLATGARWNEAAQLNGSQLTKFKVTYTNTKTKKNRSVPIAEEL 249

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATIS 297
              +     GK           +              K G+      ++H +R   A+  
Sbjct: 250 YNEIHKPTTGKLFEECYTPFCYI-----------LKNKLGITLPSGQASHVLRHSFASHF 298

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
              G     L    G   +     Y   A
Sbjct: 299 MMNGGNILVLRDILGHADISMTMRYAHFA 327


>gi|21223986|ref|NP_629765.1| traSA:integrase fusion protein [Streptomyces coelicolor A3(2)]
 gi|3319753|emb|CAA19919.1| traSA:integrase fusion protein [Streptomyces coelicolor A3(2)]
          Length = 768

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 95/392 (24%), Gaps = 66/392 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           P +       G      R  H  +    +P     +         S   R     PR   
Sbjct: 384 PGIAVTGDSTGGW-ARIRAPHTTK---SFPDRQKRLAELWLIEIASDMSRGRYVDPRAAR 439

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR----SGV 123
            T K    ++ ++     +   S++  E        R  G         +HIR    +  
Sbjct: 440 VTFKGYAVKWLETH---GIDPASQVVVEQRLRLHAFRLIGSRPLDSFRPEHIRGLVSALE 496

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +   A      +R +   AV    +  NPC +        E  R       Q   
Sbjct: 497 NDPAVSGGYARNIYGDVRAVLSAAVDDGLLPRNPCSAKSVRPPAVEQRRVVPWLPEQVQA 556

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------------TQK 228
              +   + R   +     GLR  +        +      ++                 K
Sbjct: 557 VRAALPQRYRPMVDMGAGCGLRQGEIVGLAEDAVDFASGIVRVLRQVKLIRGKAVFAPPK 616

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---------------- 272
                 V LP      L       +   I    +K +  + S                  
Sbjct: 617 CNKERDVPLPPSVADALPAHMDAFKPVEITLPWRKPDGPKVSARLLFTNTASGLVWRSNF 676

Query: 273 ----FKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWK 314
               +K     AG+                  H +R F A++  DAG +   +    G  
Sbjct: 677 NVQEWKPALAAAGLISEAGADGKYESAREHGMHALRHFYASVLLDAGESIKAVSEYLGHA 736

Query: 315 TVD-QAETYTKGA----DRIRLGIKNSRRISS 341
                   Y        +R R  I  S R S 
Sbjct: 737 DPGLTLRVYAHLMPSSQERTRSAIDQSLRFSG 768


>gi|323698902|ref|ZP_08110814.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323458834|gb|EGB14699.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 351

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 94/338 (27%), Gaps = 19/338 (5%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS-----ALTGSTPKREYINSPRKKPTTL 71
           +  + +  F   HG  IR     E+             AL  +  +         +  T+
Sbjct: 7   KRWRGVVRFAPTHGPIIRRTKFFETKRQAEDWEGETVKALKVADQRNPAKADVIGRALTV 66

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVES--RK 127
               + Y            +       F ++     D      +I+       +    + 
Sbjct: 67  TEWANRYLDHVEATMCR-KTYNEKRLAFPRLGSFLRDDRSLVGRISLHVALEHLARVSKA 125

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            + +SA +   ++   + W ++   +  +          +    R     D  +      
Sbjct: 126 VSGNSANKDRKNLAAAWVWGIKYLNLDRDNPFQHVDRFPEDRHPRYVPPLDDFRK-VLDL 184

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------- 240
            G + R       ++  R S+  +     +   +  +              D        
Sbjct: 185 AGPRRRQLLLLAFHTAPRRSELWKLKWSEVDFGLGLVGYWTRKRRSGNAEFDELPMSAGL 244

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             KL     +      +  ++        + W K   T+AGV     HG+R  +A ++ D
Sbjct: 245 RAKLAEWKLVSGAEDLVFGNRFNGLLDPNNRWLKRLCTEAGVKPFGFHGIRHLAARVAID 304

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            GAT  E+      K++   + Y     +    +    
Sbjct: 305 NGATIMEVKHLLRHKSIATTQRYILRVKKTTGAVDALD 342


>gi|153824540|ref|ZP_01977207.1| phage integrase [Vibrio cholerae MZO-2]
 gi|149741758|gb|EDM55787.1| phage integrase [Vibrio cholerae MZO-2]
          Length = 408

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 98/364 (26%), Gaps = 35/364 (9%)

Query: 10  FVTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            +      +G  ++ F          + I L    + T   A            E I+  
Sbjct: 30  GLYLRIKPNGAKLWIFNYIHPTTKKRKNISLGAFPDITLASAREKTREMRQQVAEGIDPK 89

Query: 65  R-----------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
                        + +TLK +  E+ +      ++ +         +  I    G+    
Sbjct: 90  THRDNQLITAQIAQSSTLKSVAEEWFE-VKKHDVSEDYASDIWRSLELHIFPNLGNMPIS 148

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++T   +   +   +   +  +  +    +  +  +AV    +  NP   ++   +K++ 
Sbjct: 149 ELTAPIVIQVLRPVEAKGALETVKRVCQRINEVMNYAVNCGKIQSNPLFGIKHAFKKSKA 208

Query: 171 IRPWTK-----EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               T        + Q  S  +     R AFEF L++  R  +   A    +        
Sbjct: 209 DHMSTISPDELHTLMQAMSLANIKLATRCAFEFQLHTLTRPVECAAAEWSEIDFENKLWV 268

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-----AKATKA 280
             K    +  +                +           ++T            A   +A
Sbjct: 269 ISKDKMKMKRDHKIPLSDASIQLLNFMKPISYGQRYVFPSSTSVDQHMNSQSVNAALKRA 328

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY--TKGADRIRLGIKN 335
           G+      HG+R   +T   + G     +         +     Y   +  +  R  +  
Sbjct: 329 GMKGKLVSHGMRSIGSTALNEQGFNKDAIELCLAHVDKNTIRDIYNNAEYLEERRKIMDW 388

Query: 336 SRRI 339
               
Sbjct: 389 WSNF 392


>gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908]
 gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 71/299 (23%), Gaps = 47/299 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129
            I   R        +  +  S+  +    IR         IT   I           K +
Sbjct: 6   YIEAIRAEIRVRHYSYQTEKSYLYWNRYFIRHCNIRHGDDITPALIEHFLCFLAVQCKVS 65

Query: 130 PSSAIQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDM-- 179
            S+  Q L ++    +    +  + +      + +R  +          I   +      
Sbjct: 66  ASTQKQALCAIIFACRHVLKIETKELQFPYAKTPQRIPQVLSSDEAKLIISFLSNYHHLI 125

Query: 180 --------------------------QQFKSFWSEGSQPRLAFEFL-----LYSGLRCSD 208
                                     +    +  +G + R+          L   +    
Sbjct: 126 GSILFGAGLRLKEALRLRIKDIDLSTKSIFVYQGKGQKDRVCMLPNGLVDELTLQMSHVK 185

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                       + S+         +      +  +   +            +  ++ T 
Sbjct: 186 KIHDRDLVEGFGLASLPISLIKKYRSSAAKFHWQYIFPASRRCIHPSDEYTCRHHIHPTA 245

Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           FS   +   TK+  NK  +AH  R   AT     G     +    G   V   + YT  
Sbjct: 246 FSRELRKATTKSNTNKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHV 304


>gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1]
          Length = 270

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 74/268 (27%), Gaps = 9/268 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              Y +      L+  +R  +    ++ +R     +  K  T   R  +     +P++  
Sbjct: 4   FEGYEEYLKQSELSKQTRQVYLREAEKFVRYLNGKEITKDRTMLYREKLREEDLSPATIN 63

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            ++ ++    ++    +       +  +         + + +      +S      +   
Sbjct: 64  LYVIAVNRYLRYLECGQASIKTLKVQKKCSVENIISRKEYQELLNYAKRSGRE---KYYY 120

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--PDGFMKLLAMTPIGK 252
               L  +G+R S+     V+ L+     +  +     + +         K         
Sbjct: 121 IMRTLALTGIRVSELQYITVETLETGRVQVYNKGKIRDVYLPDVLIRELKKFCREEKEND 180

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMA 309
              F       +N               G+ K     H  R F A    +      EL  
Sbjct: 181 GIIFRGRGGDPINRITVYKMIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELAD 240

Query: 310 TYGWKTVDQAETY-TKGADRIRLGIKNS 336
             G  +++    Y T   +  R  + N 
Sbjct: 241 LLGHTSIETTRIYTTSTVEEKRRKLNNL 268


>gi|289665799|ref|ZP_06487380.1| site-specific recombinase, phage integrase family protein
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 402

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 28/348 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 54  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 111

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
            +A ++R    S +++ +  K G+    +IT + +R+  ++      P++A+     +  
Sbjct: 112 -MAESTRDMRRSVYERELKAKFGNHKLAEITHEDLRALTDAIVERGAPATAVHTREIVLQ 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +++WA+ +     NP   V          R           M Q+          R A +
Sbjct: 171 VYRWAIERGQKVENPADLVRPTTIAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAK 230

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     + L +         
Sbjct: 231 LLLLTMVRKSELTNATWSEINFTEALWTIPKERMKRRNSHLVFLSKQALDIFIALKTFAG 290

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G+       H +R+ ++T+  +AG 
Sbjct: 291 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGLSLGKFGPHDLRRTASTLLHEAGY 350

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
               +      +       Y K    D+ R  +++   +        P
Sbjct: 351 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWADMIDEWTIRKP 398


>gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii
           M21/2]
          Length = 411

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/392 (10%), Positives = 94/392 (23%), Gaps = 74/392 (18%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +  Y +    GRR  +   + +  +         +  + + ++       T+ ++   Y 
Sbjct: 25  RYAYSYTDPLGRRKYI---YANDLVTLREKEARFTKDQMDGLDIYVAGKATVNFVFDRYM 81

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
                 +L   +R ++   +D+      G     +I    +                 L 
Sbjct: 82  SLK--TNLRQTTRSNYLYMYDRFIRDTFGKKKIAEIRYSDVLQFYNYLLDKQGLQTNTLE 139

Query: 139 SMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  L              R+           +  ++ T      T    + F    +  
Sbjct: 140 SVHTLLHPTFQLAVRDEIVRKNPTDGVMAEIKKSSEQTTGVRHALTIPQQRAFMEHIANH 199

Query: 190 SQPRLAFEFL---LYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTII------- 233
                 +      L +G R  ++       L           S+     G          
Sbjct: 200 PVFCHWWPLFTVLLGTGCRIGEALGLRWDDLDYERRTISINHSLVYYPVGESRNSVLHIS 259

Query: 234 ------------TVELPDGFMKLLAMTPIGKETF-----------FINNDKQKMNATQFS 270
                         +      ++L                     F N      N    +
Sbjct: 260 KPKTEAGVRTIPMFDTVKDAFEMLHEEQKESGWNDVEIDGMTGFIFCNRFGNVPNPQSVN 319

Query: 271 IWFKAKATK--AG---------------VNKSAHGVRKFSATISADAGATAHELMATYGW 313
              K       AG                + SAH +R    T   +       + +  G 
Sbjct: 320 RAIKRIIADYNAGEEVEAKKQHREAVLLPDFSAHHLRHTFCTRLCEKETNLKVIQSVMGH 379

Query: 314 KTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
           K +      Y +  +  +   ++  R+++ +D
Sbjct: 380 KDIQTTMDIYAEATEEKK--QESFERLAATLD 409


>gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
 gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1]
          Length = 302

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 79/290 (27%), Gaps = 33/290 (11%)

Query: 71  LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGV 123
           L  L+ E+          +V++  S+ S    +       R     D      +      
Sbjct: 3   LHRLVDEFAAYLAADRGFSVHTVRSYRSDLTNLVGFAVERRAIAADDLDLELLRDWLWHA 62

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                  S+  +   + R    W  +    + +    ++ PK +    R   ++ M    
Sbjct: 63  SQAGLAKSTLARRAAASRAFSAWLEQTHQSSTDAAARLKAPKAERHLPRVLNRDQMADML 122

Query: 184 S--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234
                          + +   E L  S LR S+     +  + ++  +++   K      
Sbjct: 123 QSVATRASTADPVALRDQAIVELLYASALRVSELAGLSLSDIDDSRLTVRVLGKGAKERV 182

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVN 283
           V         ++          I               ++++              A V 
Sbjct: 183 VPFGIPAHHAISDYLDRGRPQLIEETDGSAPLFVGARGKRVSTRTVYEVIAHLL--AEVP 240

Query: 284 KS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            S     H +R  +AT   D GA    +    G  ++   + YT  +   
Sbjct: 241 GSGGSGPHTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTER 290


>gi|114562815|ref|YP_750328.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
 gi|114334108|gb|ABI71490.1| phage integrase family protein [Shewanella frigidimarina NCIMB 400]
          Length = 403

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 94/331 (28%), Gaps = 27/331 (8%)

Query: 21  IIYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTL 71
             Y FR          GR   +       F+P   +AL   T  R Y      R+    +
Sbjct: 40  WQYRFRFRSSVGRLTLGRYPDVKLSEARKFVPELRNALANDTDPRVYWKQRNTRRGKVNV 99

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT-KHIRSGVESRKHT 129
           ++   ++       SL   +  +++S F   +     D     IT  + I    E  K +
Sbjct: 100 RYCCEQFLL-KQGSSLKPGTIATYQSCFRVHLFDAFDDRLVDDITLGEWIDFFDEKSKVS 158

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKSFW 186
             ++   L  ++ +  W+VR++ +     L +         T G R  T  +  +     
Sbjct: 159 RVTSGAILKQLKTILNWSVRRQLIKSVDVLQLRVSDIGSASTVGSRVLTVLECGRIWREL 218

Query: 187 SEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
            +    R      +  + +G R S+  ++       +          +     +      
Sbjct: 219 DKTRATRTITNSIKACMMTGARVSELLKSSRADFDLDSMVWTVPVINSKTNQPIRRPISP 278

Query: 244 LLAMTPIGKETFFINNDKQKMNAT--------QFSIWFKAKATKAGVN-KSAHGVRKFSA 294
            L      + +   +                   +   +    +  +     H  R+  +
Sbjct: 279 ALLELLQEQWSLHRSQWTFPAPNDFKRPVGIASVNKLVREIRPRVDIPDWRLHDFRRTIS 338

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T  ++ G   H      G         Y K 
Sbjct: 339 TRLSELGVLPHVTEKMLGHVLGGVMAVYNKH 369


>gi|302347050|ref|YP_003815348.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150592|gb|ADK96853.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 308

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/306 (10%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125
           K  T++ +   +++      +  ++  ++     + I+   GD D   ++ K ++  V  
Sbjct: 2   KTKTIREISLAWKRDKQ-RYVKQSTYAAYVLVLENHILSSFGDCD--SLSEKLVQEFVLQ 58

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           + +      +    L  ++++ K+ V+  ++               + +   T    ++ 
Sbjct: 59  KLNAGLSIKTVKDILIVLKMVMKFGVKNGWMNYCEWDIKYPTTVINKEMEVLTVTHHKKI 118

Query: 183 KSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             F  +    R L     L +GLR  + C      +  +   I   +T   I +   +  
Sbjct: 119 LDFIKQNFTFRNLGIYISLTTGLRIGEVCGLKWSDINTDSGIITVNRTIERIYIVEGERR 178

Query: 242 MKLLAMTPIGKETFFINNDKQ--------------------------KMNATQFSIWFKA 275
              L +     +                                         +  ++  
Sbjct: 179 HTELVINSPKTKNSCREIPMNKELLAMVKPLKKVVNINFYVLTNEEKPTEPRTYRNYYHR 238

Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLG 332
                 + +   HG+R   AT   ++      +    G   +      Y     ++ +  
Sbjct: 239 LMKHLDIPRLKYHGLRHSFATRCIESNCEYKTVSVLLGHANITTTLNLYVHPNMEQKKRC 298

Query: 333 IKNSRR 338
           I    +
Sbjct: 299 ITQMLK 304


>gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
 gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens
           CPE str. F4969]
          Length = 312

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 82/272 (30%), Gaps = 17/272 (6%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT----KHIRSGV 123
            T K  + EY       +L  ++   +   +  I R    +   + +      + +    
Sbjct: 13  ITFKEGVEEYLIDCKRRNLRKDTLRHYRESYKSITRIIDENIYIKDLNINSVGEFVVKCK 72

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQ 180
           E       +   +   ++    + +RQEY+        +  K+  E              
Sbjct: 73  EKFNINDQTLHTYTRDLKTWMYYWMRQEYIPNFKIKLPKVDKKNIEPYTDEELKKLLKKP 132

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             K+      +  +   F+L +GLR +      V+ +  +   +    T     + +P  
Sbjct: 133 DLKTCRFGEYRNWVLVNFILSTGLRLNSFVNIKVKDIDFDNEVVFVNMTKNRKPLIIPLN 192

Query: 241 FMKL--------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRK 291
            + +        +       +  F N+   +++    +    +   K G+NK+  H  R 
Sbjct: 193 NIIIKILREYLRIRKPDKEDDYLFCNDYGIQLSKCTINASLSSYNKKRGINKTGIHRYRH 252

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
             A      G     L    G   +   E Y 
Sbjct: 253 TFAKKWIMNGGNVVTLQKILGHSNLQITENYI 284


>gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa]
          Length = 305

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 52/292 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++ ++    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
              F   FK    +AG+ K  + H +R   AT    +G     +    G   
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 305


>gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     I  +       +  ++        K    K+ +NK  S H 
Sbjct: 66  KYRGANRDFVWQFLFPSKSISTDPRSGERRRHHLSEDSLQRAVKKALVKSEINKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|312977989|ref|ZP_07789735.1| integrase [Lactobacillus crispatus CTV-05]
 gi|310895296|gb|EFQ44364.1| integrase [Lactobacillus crispatus CTV-05]
          Length = 350

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 89/315 (28%), Gaps = 30/315 (9%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLA 88
           G+R  L    ++          + +   ++       +  T  K     + ++     + 
Sbjct: 21  GKRDYLTKSFKTEKEAKVW---STTLELQKAKGQAIAQQNTLFKDFYYLFVQTVKVHDVR 77

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146
             +  ++      I          K+    ++S ++     H+  +  + L  +R   ++
Sbjct: 78  KATFDNYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKKTVTELLKKIRTALRY 137

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSG 203
           A  + Y+  +    ++   ++       +          +      ++  L     + +G
Sbjct: 138 AYVKGYIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHTDNEFNLMVLLEISTG 197

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTIITVELPDGFMKLLAMT 248
           LR  +      + +  +                     +   +  +V +P     LL   
Sbjct: 198 LRRGEILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRRSVTIPKNIYDLLKDI 257

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                 +  +    K +        K    K G+   + HG+R   A+           +
Sbjct: 258 SQKDSGYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDTHASFLFSNNIPLSYV 312

Query: 308 MATYGWKTVDQAETY 322
               G  ++   E Y
Sbjct: 313 SRRLGHDSILTTEKY 327


>gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 113

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 F     +A ++    H  R   A+     GAT  ++    G K +     Y+  
Sbjct: 14  KDIKTAFGRALREAKIDDFHFHDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHL 73

Query: 326 ADR-IRLGIKNSRRISSVVD 344
           +    +  +    ++++  +
Sbjct: 74  SQEHKKKAVNLLNKLTARKE 93


>gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
 gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme
           DSM 15981]
          Length = 284

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 74/258 (28%), Gaps = 12/258 (4%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
             +R      +++ N+   +     Q      +     +    +        + P +   
Sbjct: 20  ERFRDYLTSKNMSTNTTCVYCYAVRQFFEIHKELTIATLQLYKVYLLE---HYKPQTVNL 76

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            + ++    ++   ++       +  +      + I      +  + + +  E       
Sbjct: 77  RIRALNCYMEYLNHKDSKMTMIKIQQKM---YLDRIISQADYEYLKRRLWEDEEFSYYFV 133

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---LLAMTPIGK 252
             ++  +G+R S+  +  +  ++     I ++               K    L  +   K
Sbjct: 134 IRYMAATGVRISELVKFEIADVKFGFKDIYSKGNKMRRIYIPTVLKQKTEVWLEKSKRNK 193

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMA 309
              F+N     + A+      K  A +  ++      H  R   A    +       L  
Sbjct: 194 GALFLNRFGNPITASGIRGQLKTFALRYNLDPEVVYPHSFRHRFAKNFIENSGDIALLSD 253

Query: 310 TYGWKTVDQAETYTKGAD 327
             G ++++    Y + + 
Sbjct: 254 LLGHESIETTRIYLRRSS 271


>gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 30/124 (24%), Gaps = 7/124 (5%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
              +    G   +       +                 + L++ P   +    +      
Sbjct: 45  WFQEDSAKGHGEVWIWESLARKYPQAARDWGWQWVFPSERLSVDPRSGKVRRHHTH---- 100

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   F     +AGV K  S H +R   AT   + G     +    G   V     Y
Sbjct: 101 -PNSLQKAFHDAVRQAGVTKPASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIY 159

Query: 323 TKGA 326
           T   
Sbjct: 160 THVL 163


>gi|331699805|ref|YP_004336044.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326954494|gb|AEA28191.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 599

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 84/380 (22%), Gaps = 80/380 (21%)

Query: 29  HGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
             RR  L               +       +     +PR    T+  L+  Y        
Sbjct: 36  TKRRHYLREVVQPGPKLDARAEATRARLVAEVAERRNPR-TNVTIDQLLERYLDQFDG-- 92

Query: 87  LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH----------------- 128
            + N+   +  Y    I    G      +  + + S     +                  
Sbjct: 93  -SPNTLTLYRGYVRNHISPLLGSTRVGALDAEMLDSFYAELRRCRLHCTMRRGRVDHRTD 151

Query: 129 -----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                             P++       +   FK AVR  +VA++P    E P    E  
Sbjct: 152 GEHECDERCRPHVCKPLGPTTIRHMHFILSGAFKKAVRWRWVAVSPVPQGEPPAAPKENP 211

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            P T  +  +  +               + +G R  + C      +  +           
Sbjct: 212 SPPTPAEAARILTAAYRDPDWGTLLWVAMTTGARRGEVCAIRWSAVNLDEGRETIWLRHG 271

Query: 232 IITVELPDGFMKLLAMTPIG----------------------------------KETFFI 257
           I            L                                              
Sbjct: 272 IRKDGRGGWEEASLKTHQQRRIALDSETVAALVEHRERGEQRAAALGSVLQPEAFVFSDA 331

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +          S  ++  A + G+  + H +R +SAT    AG     +    G     
Sbjct: 332 PDGSTFTVPDTVSQRYERLARRLGLRTTLHKLRHYSATELILAGVDVRTVAGRLGHAGGG 391

Query: 318 QA--ETYTK---GADRIRLG 332
                TYT     AD+    
Sbjct: 392 TTTLRTYTAWVSEADQRAAA 411


>gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
 gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta
           proteobacterium MLMS-1]
          Length = 420

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 84/279 (30%), Gaps = 27/279 (9%)

Query: 74  LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGV--ESR 126
           L+  Y +       A   +         Q ++  G        +++T++ +       SR
Sbjct: 125 LLDAYLEWMRVHQHAAPGTLDIRSHCLSQFLQWLGPQATPEGLQQLTSEAVEEFFLSYSR 184

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFK- 183
               +      +++R  F++ + Q Y       +V   +        R  T E  ++   
Sbjct: 185 SMGHAGRRSMQSALRTFFRFCLHQGYTQKQLDRAVPTLRTYKLATVPRGLTDEQARKVLD 244

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IIT 234
                 + G +     + L   G+R        ++ +      I  +           +T
Sbjct: 245 GISRNSNAGQRDYAICQLLYTYGVRGGQVRALCLEDIDWTNDRILFKALKHGKDSLLPLT 304

Query: 235 VELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVN---KSA 286
           VE+    +  L           +        +   N++  ++        AG++   K A
Sbjct: 305 VEVGQSLLSYLQNARPPCRYSEVFLTVRAPYRPLPNSSTLAVIVDRHIRAAGIDSHAKGA 364

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H  R   AT     G +  ++    G + +     Y K 
Sbjct: 365 HVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKV 403


>gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
 gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963]
          Length = 328

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 88/292 (30%), Gaps = 42/292 (14%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR 126
           L+ +I  +        L  N+  S++     ++       G  +  K+T  H+R  V   
Sbjct: 3   LQEVIKHFLVDVDNR-LGENTHGSYQRALRHLVNLLNSVYGIDELEKVTILHLRDCVRHM 61

Query: 127 KHTPS-----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             TPS                 S   ++   +V F W  ++E +  NP   ++ PK +  
Sbjct: 62  IDTPSEVVRERSYGKKSNLADSSVKTYVNIWKVFFNWCYQEELIDSNPSARLKAPKLEKR 121

Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            ++ +T E + +           G +  +    LL +G+R  +     ++ + +    ++
Sbjct: 122 VLKTFTSEHIYRMLDSLNLSTDIGFRDYVILLLLLDTGIRLDEIGTLLLEDVHDTYIKVR 181

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWF 273
            +       V +     K L                            + ++        
Sbjct: 182 GKGR-KEREVGIHPDVSKQLWKYVHKHRHPGNPDEPKIFIDCSKQGRGKAISRAGVKGML 240

Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                   +     SAH  R   A +    G    +L    G   V   + Y
Sbjct: 241 ARLKVALDLKDVRLSAHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292


>gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles]
 gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles]
 gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID]
          Length = 397

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 102/384 (26%), Gaps = 55/384 (14%)

Query: 14  ERTR-HGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            R R  G+      +        R    +  T   A  + +  +  + +     R    T
Sbjct: 11  YRHRPDGRWEARLLYDDPVTGERRRASFYGKT-KTAVRAKMREAIDRLDADAPVRDAAVT 69

Query: 71  LKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRK 127
           +   +  +   +      A +++  + +   Q +     G     ++ T  + + V   +
Sbjct: 70  VADWMRRWCTTTLLVSGRADSTKSLYGTLSRQYVEPAPFGAIRLDRLRTSDVEALVLRLQ 129

Query: 128 HTPS--------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                             +     T +R     AVR   +A NP  +++RP      +R 
Sbjct: 130 QATRPGRDGTPVRAVADSTIRSTYTVLRQALDGAVRDGLMARNPAAAMKRPGLSRPEVRR 189

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------- 217
              +         + GS+   A   +  +GLR  ++       +                
Sbjct: 190 IN-DAQLADLLAATAGSRYHRALLLIAATGLRAGEALALRWDAVDLDAGSLRVVATVGRV 248

Query: 218 --------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                         +  +       +                A         F +   + 
Sbjct: 249 ERRLRLTTPKTERSRRTVPLTPDMVSMLRRHRADQLAERLRAANVWEDHGLVFPSAFGRP 308

Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
           ++        +  A + G+     H +R  +A    +AG     +    G  +V    + 
Sbjct: 309 VDPRNLLRVVEQAAAQVGLEGVGVHTLRHAAAVAMLEAGIHIRAVADILGHSSVAVTGDI 368

Query: 322 YTKGAD-RIRLGIKNSRRISSVVD 344
           Y   +D   R  +        + D
Sbjct: 369 YGHTSDATARAAVDVLSARLRIAD 392


>gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6]
 gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6]
          Length = 410

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 99/357 (27%), Gaps = 40/357 (11%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTG-----ST 55
            + +PP +   K     GK +        +RI L            Y   +       + 
Sbjct: 40  KMDVPPRLWDVKNSRASGKSV------EAQRINLAVDKIRVEINRRYQELMQTDGYVTAA 93

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------ 106
             ++       K  TL  L  ++          S A  +   + +  + I          
Sbjct: 94  KLKDAYLGIGIKQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKR 153

Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D   +++    I          +K   ++   ++ +++ +   A     +  NP     
Sbjct: 154 EDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYI 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               ++      T+ ++Q       + +     R  F F +++GL  SD        LQ 
Sbjct: 214 N-SPESVDRGYLTQTEIQTLMDAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTADRLQT 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKA 275
                    T         +  ++LL +     E +       +     +    +   K 
Sbjct: 273 FFDGNLWIIT--RRKKTNTESNIRLLDVPKHIIEKYKGLARDGHVFPVPSNGSCNKILKE 330

Query: 276 KATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + G       H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 331 IGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 387


>gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233]
 gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233]
 gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 86/313 (27%), Gaps = 47/313 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ EY +         N+ ++            G       T   +R     R       
Sbjct: 21  LLDEYLRFVAAR-CRPNTLLAQMFDLKVFFTVVGRPPVEVTTADVLRFIERQRAARNGNV 79

Query: 131 ------------SSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPK 165
                       ++  + L ++  LF++   +  VA NP                    +
Sbjct: 80  VRLADGESGLALTTIKRRLATVSGLFEYLAIRGLVARNPVPRSLSARPGRAPVRGAPLIR 139

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSI 224
                 R  +  ++    S      + R     +L  GLR  +      + +Q       
Sbjct: 140 APRRLPRILSPAEVNALISALRTA-RDRAMVWLMLLGGLRRCEVLGLRHRDVQPGERRVF 198

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFK 274
            T K G    V +   F   LA     +      +              ++A        
Sbjct: 199 VTGKGGHERVVPVGKVFFAELAGYYATERPDTDTDQVFVVLKGQRRGQPLSAAGVDEVLS 258

Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DR 328
               +AG+ + + H +R    T   ++G     + A  G  +++  + Y   A     D 
Sbjct: 259 GARRRAGLAHATCHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLAPDWLVDE 318

Query: 329 IRLGIKNSRRISS 341
            R  +     I+ 
Sbjct: 319 YRKAMDILDDIAG 331


>gi|295106964|emb|CBL04507.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b]
          Length = 407

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 106/372 (28%), Gaps = 59/372 (15%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K     +   G + R  +         +  A          +++P     T      ++ 
Sbjct: 23  KWRLRVQTDKGEKPR-RFTGT------WTQAQEALKEFIGELSTPVS-DLTFGEYAEKWL 74

Query: 80  KSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------T 129
           +         V++          + R+ GD     I       G+ + K+         +
Sbjct: 75  RRRELSGDYEVDTLDKERQQIKLLDREFGDVRLIDIDKPRAEDGLLAIKNGNSPSGRVLS 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFW 186
            +   Q    M+ + + A+  + +  NP   V+ PK  T   +     T           
Sbjct: 135 GTYMNQAHARMKAIMESALDDDLIPRNPLAKVKAPKIDTPEKQALPRETLARFVCAMDAL 194

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------------- 225
              S    A   +L  G+R  +        + +    ++                     
Sbjct: 195 PLDSHTVAARLAVLQ-GMRRGEIVCTPWGDVNSTSLFVRDSVSESTGRPKGGRPKTPSSV 253

Query: 226 -------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                             +  G +  L +    +     +     M+      W++    
Sbjct: 254 RELPLMDYMAQILNRWKPVQAGMLACLGLEQTDETPICCSAIGGYMHPQNLDRWWRNNRG 313

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIK 334
             G+   + H +R    T+    G+ +  + +  GW ++  A+TY      A+R     +
Sbjct: 314 TFGLEGVTLHELRHTYLTMLGATGSPSIVIKSLAGWASLAMADTYVHEDATANR-----E 368

Query: 335 NSRRISSVVDSD 346
             + + +V+D +
Sbjct: 369 AVKHLGNVIDFE 380


>gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1]
 gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1]
          Length = 328

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 86/300 (28%), Gaps = 46/300 (15%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITT- 116
              ++   T K +   Y+        +  +   +  +    +    D    F   ++   
Sbjct: 15  QRKKRNRDTKKTIFEIYK--------SEKTVKDYMFHLKDFLHFVYDGENNFSISEVIPL 66

Query: 117 ----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                      +I    E RK   +S    L++++ L+K             + + +  R
Sbjct: 67  MQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNR 126

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             E I   + +D+++    +   S    +       L Y+G+R  +      +H      
Sbjct: 127 NIENILKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLKFKHYLKREN 186

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------------------KQK 263
               +   T    ++     K L       + + ++                        
Sbjct: 187 EYFFKLIETKSGKDVYKPIHKSLVKKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSP 246

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++    +   +      G + S H +R   AT  + +GA   E+    G       E Y 
Sbjct: 247 LSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYI 306


>gi|71909266|ref|YP_286853.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71848887|gb|AAZ48383.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 340

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 97/328 (29%), Gaps = 21/328 (6%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G      R+     + +           +  A+        Y++    +  TL  L
Sbjct: 5   RQRSGGWQVRVRRQGYPDV-VKTFKLRQDGEKWARAIERELDMGCYVHRTEAERMTLAEL 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132
           +  Y K           R         +  +   +    +T   +    + R      ++
Sbjct: 64  LDRYGKEVSPQH--KGHREELWKIGVILRDRIAKYSLVALTPMLVADYRDRRLQVVADAT 121

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A   L  +   +K A R+  + ++  +S  +        +    +   +     S+  + 
Sbjct: 122 ARHELNIISAAYKVAAREWGIPVSNPVSQIKRPPAGRERKRRISQAEIEAIIQHSKTREL 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPI 250
                  + +G+R  +  R   Q +        +   K G    V L    + +L   P 
Sbjct: 182 PDFLCLAVTTGMRRGEIIRLRWQDIDMGRRLAYLSDTKNGEDRVVPLSSEALAVLQAMPR 241

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKAT------KAGV--------NKSAHGVRKFSATI 296
             +    + + +  +        +A+         AGV        +   H  R  + + 
Sbjct: 242 RFDGRLFSLEPRGFSKAMRKSVVRARRAYEAESSLAGVQPDPEFLCDLRLHDARHEAVSA 301

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             + G    E+ +  G KT+   + YT 
Sbjct: 302 FFERGLDVMEVASISGHKTLSCLKRYTH 329


>gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 423

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 76/305 (24%), Gaps = 33/305 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSR------ISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
            L  E+ K          +        +        I    K  D    ++         
Sbjct: 111 ELCDEFCKEYKNRIDVDRTIHSLFRYQTLRRDLSLFICQDYKVKDIPLVELDQSFAEKFA 170

Query: 124 ESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              KH    A   ++     ++ + K A     +  NP             I   T+E++
Sbjct: 171 AYLKHVKGLADTTISVEIKSLKHIVKKAFNDGQMEKNPFA-YYYYFADQPEIEYLTEEEI 229

Query: 180 QQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +            + R  F F  ++GL  +D  +   + L+          +    T  
Sbjct: 230 NKLIIGKVKQQRQDRTRDMFLFCCFTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKV 289

Query: 237 LPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAGV--N 283
                       +L    I    F     +        +         K  A + G+  N
Sbjct: 290 PFTVKLLPVAKAILEKYRIPANRFNRLFPENPGKVFPVASLKSSDASLKHIARQCGIAKN 349

Query: 284 KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              H  R   AT      G     +    G K     + Y K  ++  +      RI   
Sbjct: 350 LKFHTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ--MIGNAISRIEDK 407

Query: 343 VDSDD 347
           +    
Sbjct: 408 IGDRF 412


>gi|300954451|ref|ZP_07166903.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300318601|gb|EFJ68385.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
          Length = 412

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 105/357 (29%), Gaps = 33/357 (9%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     R+RL    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKA-AQCRAWLAEGKNPRHELNHTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             P T+K  ++ + +S        + S  S       II + G     K   +H  +  +
Sbjct: 104 LAPVTVKDALTYWLESYAKEKRTDHESLKS--RINKHIISQIGAMPLDKCELRHWLACFD 161

Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQ 180
              +  P SA   L   +   K+  ++ Y   N    +       +     R  T +++ 
Sbjct: 162 QLANRNPVSAGFLLQVCKQALKYCRKRRYAVSNVLDDMVVGDVGKKAEISERVLTNKELG 221

Query: 181 QFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      E             L+  G R ++  R+ V+            K  +   V +
Sbjct: 222 ELLRALDEKIFPPYYSALIRLLIVFGCRTTELRRSEVREWDFKEMLWTVPKEHSKTKVAI 281

Query: 238 PDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFS 293
                + +    +       +      +    +  + + +    +      S H +R   
Sbjct: 282 FRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQTPWSLHDIRHTF 341

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
            T+  D G   H +      +       Y      D  R  +     R+  + ++D+
Sbjct: 342 TTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLELLQNNDE 398


>gi|168758797|ref|ZP_02783804.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769858|ref|ZP_02794865.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189354442|gb|EDU72861.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361118|gb|EDU79537.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
          Length = 412

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 36/358 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E  ++ +   
Sbjct: 45  WYFTYRAGTGRQISPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNHAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGAMPLEKCELRHWLAC 159

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +      P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQLAKRNPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      E             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRALDEKIYPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRK 291
            +     + +    +       +      +    +  S + +    +      + H +R 
Sbjct: 280 AIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQAPWTLHDIRH 339

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDD 347
              T+  D G   H +      +       Y      D  R  +        ++ ++D
Sbjct: 340 TFTTMLNDLGVDPHVVEQLTAHQLPGMQRVYNHSRYLDAKRDALNLWGERLELLQNND 397


>gi|145296000|ref|YP_001138821.1| hypothetical protein cgR_1924 [Corynebacterium glutamicum R]
 gi|57158158|dbj|BAD84127.1| similar to integrase [Corynebacterium glutamicum]
 gi|140845920|dbj|BAF54919.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 393

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 107/373 (28%), Gaps = 55/373 (14%)

Query: 15  RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK+ +   +R   G+       +      A+ +  + +  + E+I +P    TTL 
Sbjct: 11  KLKNGKVQWVVRYRDPSGKEHS-KTFYTEKEAKAFDTEQSRALRRNEWI-NPVDAETTLG 68

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130
            +   +   A        +    +++   +     D     + T  I S  +        
Sbjct: 69  VITQAWADEAT----RDETISVRKTFLRNLGP-LADMPISAVKTSDILSWRKKLLTGRDW 123

Query: 131 ---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                    ++A      M VL +    +  + I      +    +    +    E+  Q
Sbjct: 124 LDGSTLSESTTANTVGQLMSVLKRAQQDRMILVIPTVRVPKSAPARAISRQELLTEEQIQ 183

Query: 182 FKSFWSEGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
             +      +        L         SGLR S+ C    + +     +I   +     
Sbjct: 184 SIAHAVATPKGHYKARPWLKSMIRVAAGSGLRVSEICALRPEDVNFLRHTISVSRQMGRG 243

Query: 233 ----------------ITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIW 272
                           +   +    ++ +   P+       T  +    +  + +  +  
Sbjct: 244 GVAKTPKSKASVRTIPVARWVTTEIVEWIKENPVGESGWIWTRPVGEPGRPFDRSAVTHG 303

Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA---- 326
                   G+   S H  R F A++    G  A+ +    G  +     +TY        
Sbjct: 304 LLPAIKAHGLRQHSFHDFRHFFASVLIFKGVPANAVQDALGHASASVTWDTYAHIFPGQD 363

Query: 327 DRIRLGIKNSRRI 339
           D +R  +     +
Sbjct: 364 DVMRDALAGLNLL 376


>gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
 gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14]
          Length = 160

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATY 311
             F +   +    +  S   KA A +AG+ K    H +R   AT   + G     +    
Sbjct: 65  WLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELM 124

Query: 312 GWKTVDQAETYTKGAD 327
           G   +   E Y   AD
Sbjct: 125 GHNNIKTTERYVHIAD 140


>gi|320007186|gb|ADW02036.1| integrase family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 548

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 106/351 (30%), Gaps = 40/351 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
              RR  +     +    A  +       + E          T+   ++ +   A    L
Sbjct: 132 PDHRRTTVRRGGFTNQDSADEALRRFL--EGEAGGFEADPNQTVAAYLATWLA-AKALVL 188

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVL 143
             ++   +  Y    +I   G     ++  +HI + V S+       ++  + L ++   
Sbjct: 189 KPSTMARYRDYVRNDLIPAFGTLKLDQLANRHIAAFVTSQLAVGCGRTTLYRCLATLSSA 248

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYS 202
              AVRQ+ +   P       +  +   R WT E+  +F +   +        FE L+ +
Sbjct: 249 LGDAVRQQRLPRTPASPPVLHRPPSPERRIWTAEEAARFLTHCHQTDPEMADLFEVLIGT 308

Query: 203 GLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELPDGFMKLLA 246
           G+R  ++       +                 NN   + T KT +          + +  
Sbjct: 309 GMRKGEALGLHWNDVHLDQGVLYIRCTLSAVDNNRLVLTTPKTRSSRGWVAISPRVAIAF 368

Query: 247 MTPIGKETF-------------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                                 F   D + +            + +AGV + + H +R  
Sbjct: 369 RHRARSAPRAHGDADDPFAGLVFCRPDGRPLGPHLVLDRLHRLSEEAGVPQVTVHDLRHL 428

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADR-IRLGIKNSRRISS 341
           +ATI+  AG     +  T    T+      Y+    +     +     + S
Sbjct: 429 AATITISAGVPLTVVSKTLRHSTLSTTANLYSHLTQQAAHQAVDTIDHVLS 479


>gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
 gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149]
          Length = 420

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 101/384 (26%), Gaps = 61/384 (15%)

Query: 18  HGKIIYYFRKGHGRRI-----RLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK-PTT 70
            G+  Y +    G+R      RL    +      A +S        +            T
Sbjct: 22  SGRYRYKYTDSLGKRKILYSWRLTEADKMPEGKRADLSLREKERKVQSLQMQGITGSNIT 81

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI---TTKHIRSGVESR 126
           +  L+  Y        +  N+  +++   + +   +        +     K     ++  
Sbjct: 82  VLELVERYLSLK--TGVKHNTLANYKFVVNVLKKEEFAYKKVDDVKLSDAKIFLIKLQRD 139

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               SS       +R  F+ AV  + +                ++  +  + ED  +F  
Sbjct: 140 GRGYSSIHSIRGVLRPAFQMAVDDDLILKNPFGFELGTVLVNDSQKRQAVSPEDETKFLD 199

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCR-------AGVQHLQNNIFSIKTQKTGTIIT 234
           F            AF  L  +GLR S+ C             +  N    +T++   II 
Sbjct: 200 FVKNDPHYNQYYDAFYILFKTGLRISEFCGLTVKDLDFKEDIINVNHQLQRTREMKYIIV 259

Query: 235 VELPDGFMKLLAM-------------------TPIGKETFFINNDKQKMNATQFSIWFKA 275
                   +LL M                        + +       K      ++ ++ 
Sbjct: 260 STKTTSGTRLLPMEADVKEAFLRILKNRRKPKREPMVDGYGGFLFLDKNGRPMVALHWEK 319

Query: 276 KATKAG-----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               A               + H  R    T  A++G     L    G   V      YT
Sbjct: 320 YMQHAREKYNRENLLQLPPVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYT 379

Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347
                        + ++ + ++ D
Sbjct: 380 HTGY-----DDAKKELARLKEARD 398


>gi|145629898|ref|ZP_01785689.1| prophage integrase [Haemophilus influenzae 22.1-21]
 gi|148827585|ref|YP_001292338.1| hypothetical protein CGSHiGG_05060 [Haemophilus influenzae PittGG]
 gi|144977725|gb|EDJ87675.1| prophage integrase [Haemophilus influenzae 22.1-21]
 gi|148718827|gb|ABQ99954.1| hypothetical protein CGSHiGG_05060 [Haemophilus influenzae PittGG]
          Length = 293

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 88/272 (32%), Gaps = 19/272 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--- 121
           +K   T++  +    K A          ++   +      + G+     +T++ I++   
Sbjct: 6   KKPEKTVEQALILLLKDAEHKKDK----LTKIQHAKYWRDEIGNKLLSSLTSEDIQNAIP 61

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +  +P++  ++ +S+      A +  ++ + P ++      + +    W  E 
Sbjct: 62  THVVRTGKILSPATQNRYRSSIMRAINLAKQAGWIDVVPYIAK---NSEPKKRIRWITEK 118

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
             +        +  +   +F L +G R ++        +                    +
Sbjct: 119 EAERLLDSLNLNWMKDVCQFALLTGARMTEILSMTWDKINFANKMAIVTGDIAKSGRGRS 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKF 292
           + L D  + L+      + + ++ +          S   FK    +A +     H +R  
Sbjct: 179 LPLSDDAINLIKERMKYQVSPYVFHSGTGKLRDDISRRDFKRALQRANIKNFRFHDLRHT 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+     G     L    GW+T++  + Y  
Sbjct: 239 WASWHIQRGTPLMVLKELGGWETIEMVQKYAH 270


>gi|223934045|ref|ZP_03625998.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223897302|gb|EEF63710.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 364

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/359 (10%), Positives = 90/359 (25%), Gaps = 31/359 (8%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R    +    ++   G   +       T   A  +A                K  TL 
Sbjct: 5   RKRDNGWEYRISYKAPDGSYKQKSKSGYRTKAEAVQAASQAEIEL--SNGIVEDKNITLA 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
               ++        +   +   +E     I     +    KI     ++ +      +  
Sbjct: 63  EYFEKWMLVHKKPHVGPETFGKYEYTLKLITIYFHETKLSKINATSYQNIINELAKCYVK 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-----WTKEDMQQFKSF 185
            S  +F + +R   K A+ Q  +  +    V+                  + +       
Sbjct: 123 DSVKRFNSHIRAAIKVAIHQGILKKDFTEIVKIFSDVESKKEEDKYLELDEYEQVITDYR 182

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------- 231
            +   Q       +  +GLR S++       +      ++ ++T                
Sbjct: 183 KTIKYQSHFFLYTIGKTGLRFSEAAGITEPIVDRENMCLRIRRTYKVYGKKKGWGPTKNP 242

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNKSAHG 288
                V     ++K              +     K+  T  +   K K  +     + HG
Sbjct: 243 QSERDVPFDSEWLKAYDEYMKVGYIDNPDKRLFTKLTGTGENKILKKKTRQ---TFNVHG 299

Query: 289 VRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR-LGIKNSRRISSVVDS 345
           +R    +           +    G K      +TY+      +       R +     +
Sbjct: 300 LRHTYVSWLIYHDVDVVTIAKLVGHKDATETLKTYSHLFKAKQEESFDKVRNLMEKFGA 358


>gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 98/380 (25%), Gaps = 51/380 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     G+  + +        ++P         +    +       +       K 
Sbjct: 12  RYAYKYIDTFGETQFVYSWKLVPTDKVPAGKRPCL--SLREKIKQIQKDLDDGIDTIGKK 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            T+  L  +Y  +   G++   ++ S +     +   K G      +     +      +
Sbjct: 70  MTVCQLYEKY--TRQRGNVRKGTQKSRQQLMKLLSEDKLGAASIDSVKLSDAKEWALRMQ 127

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF 182
               +         S++ +F  AV+ + +  NP      E     T    P T     + 
Sbjct: 128 EKGVAYNTICNSKRSLKAIFYMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPTQENEL 187

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F    S   +       LL +GLR S+ C      L      +               
Sbjct: 188 LDFMQNDSVYAKYYDEVVILLETGLRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYY 247

Query: 233 ----------ITVELPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFS 270
                       V +     +                    K+  F+N D     A  + 
Sbjct: 248 IEAPKTESGFRQVPMSAAAYEAFERVLKKRRDGKGIEVDGYKDFLFLNRDGLPKTAVNYD 307

Query: 271 IWFKAKATKAG------VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK  A K        +    + H +R    T  A+AG     L    G   +     Y
Sbjct: 308 AMFKCLAKKYNKCHKEPLPDVMTPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 367

Query: 323 TKGADRIRLGIKNSRRISSV 342
              A       +   R+ + 
Sbjct: 368 YAHATF-HSAQEEMERLQAK 386


>gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +   L               +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYALPSNQRCFAPDLGTVKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|167752534|ref|ZP_02424661.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
 gi|167659603|gb|EDS03733.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216]
          Length = 379

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 78/252 (30%), Gaps = 17/252 (6%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
             +  Y  + IR  G  D  +  IT    T  I     +  H PS     L  ++ L   
Sbjct: 108 KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHKPSYRNHCLCWLKRLVYL 167

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           AV    +  NP   ++  K+    +   +K  +Q+  S   +       R  F F  + G
Sbjct: 168 AVDNGILRYNPLDDIKYEKKAPTKLMYISKSQLQEIMSNPKQNPLQELARRTFIFSCFCG 227

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       H+       K  +T         + F+ L  +       + + +D Q 
Sbjct: 228 LAYVDVRNLYPHHIGTTAEGRKYIRTY--RKKTSVESFIPLHPVAEQIISLYNMTDDSQP 285

Query: 264 MNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +           +  + G       N S H  R    T+   AG     +    G   + 
Sbjct: 286 IFPLPIRSMIWFEIQELGFSLQFKHNLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIR 345

Query: 318 QAETYTKGADRI 329
             + Y K  D  
Sbjct: 346 TTQGYAKVTDDK 357


>gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)]
          Length = 299

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 197 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 257 ATHLLEVGADIRTVREQLGHTDVKTTQIYTHVLDR 291


>gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3]
 gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 406

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 IFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGATAHELMAT 310
                     +   + + + K  A   G++K  S H  R   AT      G +   +   
Sbjct: 311 AECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSVCLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
 gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 79/274 (28%), Gaps = 40/274 (14%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + L+ E+  + H  SL+  ++ ++                            ++     +
Sbjct: 100 EELLKEFL-TIHTSSLSDATKKNYRMALLNFFSFI---------------DKQNEDEQGT 143

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           S           F+  ++                     +  +              G++
Sbjct: 144 SYN---------FRIELKNWGGLRGKSGQKLPSFMNENEVHRFIDGINNFTFKHQDLGAR 194

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RL  + ++Y+G+R  ++    ++ +  +      Q  G      +     K +      
Sbjct: 195 NRLILKIIIYTGIRVGEALGLKLKDIMQDGEFYLIQVRGKGNKPRVVMLKSKNIHTDLQL 254

Query: 252 KETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
            ++            F N+  +K+     S   +      G+ K    AH +R   AT+ 
Sbjct: 255 WKSTRDTMQAEEDLLFCNHKGKKLTQAYISRIVEQVLVANGIRKEKNGAHMLRHSFATLL 314

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                    +    G  ++D +  Y    D+ +L
Sbjct: 315 YQKSQDLVLVQEALGHASLDTSRIYMH-FDKQKL 347


>gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 368

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T  +++Q 
Sbjct: 151 HSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVKKEYLTLNEVKQL 210

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 211 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 268

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +         T       + +  +  +   K+   KAG+    + HG R   A I    
Sbjct: 269 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISL 328

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 329 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 366


>gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +     +  +       +  ++        +    +AG+    + H +R   AT 
Sbjct: 74  WMWQYVFPADRMSNDPRGGVVRRHHVDPQVIQRALRDALRRAGISKPATPHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++G     +    G K V     YT   
Sbjct: 134 LLESGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259]
 gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259]
          Length = 409

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 78/263 (29%), Gaps = 17/263 (6%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQF 136
                      +  +  + I ++    D    ++T + I        + +     +   +
Sbjct: 129 RAKGTYPAYIYTRRTLAEFIEKEFRTKDIVFGQMTEQFIHDYQSFILDDKGLAIETCRHY 188

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191
           L  ++ + + A ++ Y           PK+K    +  ++E  ++ +       +     
Sbjct: 189 LAIVKKVCRRAYKEGYADRCFFAHFSLPKQKENTPKALSRESFEKIRDLVIPEHRTSHIL 248

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTP 249
            R  F F  Y+G   +D+      +L  N       K             +  + L +  
Sbjct: 249 ARDLFLFACYTGTSYADAVSVTRNNLFTNDEGSLWLKYRRKKNELRACVKLLPEALTLIE 308

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHE 306
             ++           +        K+ A  A +  + + H  R   A++   + G     
Sbjct: 309 KYRDDERPTLFPMLYHPN-LRRLMKSLAVLADIKEDLTYHAGRHSFASLITLEVGVPIET 367

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +    G   +   + Y K   + 
Sbjct: 368 ICKMLGHSNLQTTQVYAKVTPKK 390


>gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
 gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335]
          Length = 302

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 74/289 (25%), Gaps = 52/289 (17%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAV 148
           ++  S+  Y    I        +K+    IR+ +         +A     ++  L     
Sbjct: 2   STEKSYVYYIRDYILFHNKQHPKKMGASEIRAYLSHLATVRHVAASTQTVALSALLFLYR 61

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
           +   + +    ++ER KR       +T+ ++ +  +  +      L    L  +G+R  +
Sbjct: 62  QVLGIELPYIDNIERAKRPQRLPVVFTRSEVMRILA--NLDGINHLVVSLLYGTGMRLME 119

Query: 209 SCRAGVQHLQNNIFS----------IKTQKTGTIITVELPDGFMKL-------------- 244
             R  V+ +                 +       +   L     K               
Sbjct: 120 GLRLRVKDIDFEYRHITVRDGKGKKDRHTLLPESVIQPLQHQLKKAKHLHEQDLAVGYGT 179

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQ-----------------FSIWFKAKATKAG 281
                 LA         +                                  K    KA 
Sbjct: 180 VELPYALARKYPSAHKEWKWQFVFPSGKRSLDPRSKVVRRHHLYEQSVQRAVKKAIQKAE 239

Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           + K+   H +R   AT   + G     +    G K V     YT   ++
Sbjct: 240 ITKNGGCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288


>gi|163800577|ref|ZP_02194478.1| putative integrase [Vibrio sp. AND4]
 gi|159176020|gb|EDP60814.1| putative integrase [Vibrio sp. AND4]
          Length = 407

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 109/408 (26%), Gaps = 77/408 (18%)

Query: 1   MTPS--LRLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHEST---FIPAYMSALTG 53
           M PS  ++LP  V      HGK +   +  KG  RR  L          F       +  
Sbjct: 1   MAPSQNVKLPAGVEI----HGKSLRLDFVYKGKRRRETLGLSPTKQNVRFAAQKRETIMY 56

Query: 54  STPKREYI----------NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                 +            + + +  T   ++ +Y +      L  ++   + S F    
Sbjct: 57  EIKIGIFRYAAHFPDSPYATEQSQSRTFGEMVDKYLQ-LKQADLRSSTYKKYVSLFKITK 115

Query: 104 RKSG-DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              G +     ++ + +              +   +  ++   F W  +  YV  N    
Sbjct: 116 NAYGANRSCSTLSPESVSELRALLIKGRGARTLNTYFRAINTFFGWLHKMGYVDRNFSEF 175

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           +   K     I P+T +++ +      +     +    L Y+GLR  + C    + +   
Sbjct: 176 MPSVKTPERNINPFTIDEINKALDACMQEQHKNMITL-LAYTGLRTGEICGLAWEDVDFE 234

Query: 221 IFSIKT------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINND-------- 260
              +               KT    TV+L    ++ L         +             
Sbjct: 235 NKVLTIRRATFESRGLKTPKTDRERTVDLMPPALEALQAQKKLSSHYPQKEHEVELADKT 294

Query: 261 -----------------------KQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATI 296
                                      + T  +  ++    +AG+     + +R   A+ 
Sbjct: 295 IRLDNIRFVFNPKATENLNAKTPYDYFSKTAPNKMWRNICIRAGIPYRNVYQLRHTYASW 354

Query: 297 SAD-AGATAHELMATYGWKT-VDQAETY-----TKGADRIRLGIKNSR 337
               A      L    G    +  A  Y      K A       +  +
Sbjct: 355 MLSYANVNIAYLAQQMGHSNFLMIASVYGKWMKNKNASESEKAWEALK 402


>gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163]
          Length = 351

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVES 125
            TL+ L   +         +  +   +       +            +++   + +    
Sbjct: 19  QTLRQLAESWLAHLVVAGRSARTAQGYGERVXAFLAWCEPRGITYAPQVSLAVLEAYQRW 78

Query: 126 RKHTPS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
            +             S +  L+++R+LF+W +++ ++  +P   +E PK +         
Sbjct: 79  LQGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFS 138

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229
              T+  +Q   +    G + R   E L  SG+R S+     +  +       +++  K 
Sbjct: 139 EAETRRVLQSLDAGTPPGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKG 198

Query: 230 GTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           G    V +    +  L               ++    ++     +        AG     
Sbjct: 199 GKDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRS 258

Query: 286 ---------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                     H  R   AT   + GA    + A  G + ++  + YT+ A
Sbjct: 259 GAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308


>gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70]
 gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70]
          Length = 301

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 96/301 (31%), Gaps = 36/301 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128
             I  + +  +  +    +  S+ +     +       G+    +     ++  +   KH
Sbjct: 3   QFIDPFVRYLYEEAKDKKTIASYRTTVAHFLEWYEQREGNIIIEETRPVDVKEYISYLKH 62

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQ 180
                P++  +++ +++V F +      V  NP   ++       + +   +  TKE+ +
Sbjct: 63  QCKRKPATINKYIAALKVFFSYLTEVGLVKDNPMTRIKTEKIEYAQGSSQTKWLTKEEQE 122

Query: 181 QF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------N 220
           +F      +    +  +     + ++Y+GLR ++     +  +Q               N
Sbjct: 123 RFISYVELEKNEFKRLRNLAIIDLMIYAGLRVNEVASLELSDIQVKGNDVEIIVRQGKGN 182

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATK 279
            ++           +     + + L  +   +    F++     +            A  
Sbjct: 183 KYASVLLVQKYSRNLRKWLKYRQNLEKSTHKESQRLFVSERSMFLTERAIQKMLTKYADL 242

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           A +   + H  R       A+AG     +      +++     Y   +   +  ++  R+
Sbjct: 243 ANMKNITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDASKEEQ--VQALRK 300

Query: 339 I 339
           +
Sbjct: 301 M 301


>gi|118466667|ref|YP_879975.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118167954|gb|ABK68851.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 370

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/369 (11%), Positives = 97/369 (26%), Gaps = 55/369 (14%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE---YINSPRKKPTTLKWLISEY 78
            Y      G+                  A  G           +   +   T++    ++
Sbjct: 2   RYQVTVDAGKAADGRRRQVRRRYRTENEAREGLAKITGGVVEGSFVARSALTVEQACRDW 61

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----------GVESRKH 128
                   +   +R ++      +  + GD   +++T  H+              + R  
Sbjct: 62  LAGM--HDIEPTTRAAYTHALKPLRERHGDMAVQQLTKSHLDQLVTDLTTGKLDGQKRAW 119

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T +S    L  +  +    VRQ  +A +    V+R KR    +  +T+E+++Q       
Sbjct: 120 TANSINPMLNLVSRVLADLVRQGALARDVAAFVKRLKRPESKLTTFTEEEVRQLLKHVEN 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------------------- 223
                        +GLR  + C      +Q +                            
Sbjct: 180 DRLGHAWHL--ALAGLRRGEICGLEWADVQLDDDRDAGTLTVAHNRVSVGGRVHEKAPKT 237

Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                         +             ++L            +++  +  +    S ++
Sbjct: 238 VRSARTLPLTPTLARMLKRAKALQAAERLRLGPHYLGDGVRVVVDDSGRPYHPDTLSDFW 297

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA-DRIR 330
           +     A V +   H  R   A++    G     + A  G          Y     D + 
Sbjct: 298 RELCGDAKVRRIRLHDARHSCASLMHAQGVPIAVISAWLGHADPAFTMRTYVHAENDALN 357

Query: 331 LGIKNSRRI 339
           L   + +++
Sbjct: 358 LAAASLQKV 366


>gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella
           amazonensis SB2B]
 gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella
           amazonensis SB2B]
          Length = 318

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 77/269 (28%), Gaps = 7/269 (2%)

Query: 65  RKKPTTLKWL-ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           ++ P T+    I+ +         +A N++    +    + +K    +  ++        
Sbjct: 40  KRHPDTMGSAEITAFLTYLAVERHVAANTQKVALNALIYLYQKFLQIELGELPFSLATKQ 99

Query: 123 VE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T +     L  +  +    ++  Y +        R + +   +   +      
Sbjct: 100 RSLPIVVTQTEVAHILAKLSGVHLHVIQMLYGSGLRVTECLRLRVQDVDLERLSVTVHDG 159

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +   +    R +    L   +  S + +    + +    S+ T  +          G+
Sbjct: 160 KGNKDRQTLLSR-SCLNWLPDQIEHSLNIQQK-DNQRGIGPSMPTALSVKYPNAFREPGW 217

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299
           M L   + +          +  ++ +      +     AGV K    H  R   AT    
Sbjct: 218 MYLFPSSGLCPHPITGEICRHHLHDSAIRKALRIAVRHAGVRKKVNCHTFRHSFATHLLQ 277

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328
           AG     +    G   V   + YT    +
Sbjct: 278 AGYDIRTVQELLGHNDVKTTQIYTHVLGQ 306


>gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 354

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGINTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q        +     K           +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFNINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 309

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 90/288 (31%), Gaps = 23/288 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + +   +  +     S++      G++   +   ++     + +   D    +      +
Sbjct: 2   VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 61

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
             +      H   + + F   ++     AV +  +  +P     ++  + + + ++   +
Sbjct: 62  KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKVKYLNQ 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            ++    +       P   +  LL   +GLR S++             ++   KT     
Sbjct: 122 FELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKN 181

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                          V+L    +  L++               K+  +  +        +
Sbjct: 182 GGGFVPTKNASSVRKVQLDWQLIMQLSVLLKSLPGDKPIFVDGKVYNSTANGILARHCKQ 241

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           AGV   S HG+R   A++   AG +   +    G  +++  +  Y   
Sbjct: 242 AGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQEIYLHV 289


>gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 380

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 72/252 (28%), Gaps = 18/252 (7%)

Query: 89  VNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK----HTPSSAIQFLT 138
             +   +            D          ++    I       +      P++A + + 
Sbjct: 130 AATLQKYNVCKKHFSNFLRDKYGRSDIRLSELGYIVIHDFDIYLRTVVGQNPNTATRMMK 189

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
           + + +     +   +  +P L++     +       T E++ +  +      +    R  
Sbjct: 190 TFKTITILGRKLGVLHHDPFLNIRF-HMEPVNRGFLTDEEILKIANKDFGIGRLELVRDV 248

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--E 253
           F F  ++GL   D      +++                +VE     + +          +
Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
           T+        +   + + + K  A   G+ K  + H  R   AT+S   G     +    
Sbjct: 309 TYRDGKLFPMLTNQKLNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKML 368

Query: 312 GWKTVDQAETYT 323
           G   +   + Y 
Sbjct: 369 GHTNIKTTQIYA 380


>gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii]
          Length = 336

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 78/302 (25%), Gaps = 40/302 (13%)

Query: 74  LISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV 123
            I  Y          L  ++  S+       +    D          +  +    ++  +
Sbjct: 9   AIHRYFLEYLPRHKGLQSSTIRSYRDSLRLFLIFVADANRIGVSELAFEHLGYAAVQDFL 68

Query: 124 ESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-------VERPKRKTEGIR 172
            + +       S+  Q LT++ + +++  R     +                       R
Sbjct: 69  NNMEVKRGNAISTRNQRLTALHMFYEYLGRTTPEMLPASAKVAAIPMKRCPLPEMKFLAR 128

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTG 230
              +       +      + R     L  +G R S+  +  V  L     +      K  
Sbjct: 129 DEVEAMFALIPAHDRLSQRDRALLMLLYNTGARVSEVAQLKVGQLDLQSPARVRLLGKGS 188

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAKAT--KAG 281
              T  L     K L      +      +           M         +  A   +A 
Sbjct: 189 KWRTCPLWSQTAKALQSMLDERPERLPPDAPVFVGVAQEGMTRFGIYKRIRHYAKLWEAS 248

Query: 282 V------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
           V      + + H  R  +A    ++G   + +    G   ++    Y +    IR+  + 
Sbjct: 249 VTASSPTHVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEIT--IRMKAEA 306

Query: 336 SR 337
            +
Sbjct: 307 LK 308


>gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           Tor]
          Length = 362

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +   +   K        +  ++ T  +   ++   ++GV  + +AH  R   AT 
Sbjct: 260 FKWQFIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQ 319

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AG     +    G   +   + YT    +
Sbjct: 320 LLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQ 351


>gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8]
 gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8]
          Length = 322

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 77/305 (25%), Gaps = 59/305 (19%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAI 134
           R        +  +  S+  +    I  +     + +    I   +      R  +P +  
Sbjct: 11  RTEIRTKQYSYRTEKSYLYWVRLFILFNDKKHPKVMGNHEIERFLNHLAVNRGVSPGTQN 70

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           Q L ++  ++K  +++        L  +  K         + +++          ++  L
Sbjct: 71  QALCAIIFVYKHVLKR----EIENLQYKMTKTPRRMPTVLSPDEVASILQNM--DAEYWL 124

Query: 195 AFEFLLYSGLRCSDSCRAGVQHL------------------------QNNIFSIKTQKTG 230
               L   GLR +++    V+ +                               +     
Sbjct: 125 ITALLYGCGLRINEALSLRVKDIDLKSRSLLVFNGKGRKDRYTLIPGNLRENMERQFAHV 184

Query: 231 TIITV-----------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
             +                             G+  L                +  ++ +
Sbjct: 185 RAVHESDLADGFGLTSVPASLHKKYGPAMKDFGWQHLFPSVTRCVHPIAGYVCRHHLHHS 244

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +S   +      G+ K  +AH  R   AT    +G+    +    G   +   E YT  
Sbjct: 245 SYSRRLRQAVLATGITKRVTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHV 304

Query: 326 ADRIR 330
               R
Sbjct: 305 IGDRR 309


>gi|315166022|gb|EFU10039.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 311

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 85/287 (29%), Gaps = 28/287 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
              TL     ++ ++    ++   + + + +    I    G+   ++IT    +  +   
Sbjct: 3   TTLTLADYFQQWMETFKKPAVTSVTYVKYRNSHKHIYTYFGNIKLKEITRHRYQKWLNDF 62

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + H   +   F   +R     AV +  +  +         R+ +  +       +  K 
Sbjct: 63  AKNHAKRTTSGFHKQIRAAILDAVEEGIIDTDFTRKAIITGREKKKAKVMYHSYSEWQKL 122

Query: 185 FWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                SQP     F++Y    +GLR ++     V  +      I   KT           
Sbjct: 123 IHYTRSQPLNPNNFIIYLSAMTGLRFAEVLGITVADIDFKHKLISVNKTWDYKYRTGFKE 182

Query: 241 FMK--------------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                  +      G +    +++++   +   +   +    K 
Sbjct: 183 TKNASSVRTVDVDTKTLKVIKEVIRFRRFRGDDKICADDNEKLPVSATINRHLEKACQKL 242

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
            ++  S HG+R   A+I    G     +    G K V   +  Y   
Sbjct: 243 KLSSISFHGLRHTHASILLFKGVNILSVSRRLGHKDVTTTQSVYLHV 289


>gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319]
 gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK---SGDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   +     +  + I+      D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGIDIKEGAIHGYHSARIHLQKFIQWKYKVSDLAFSQLTENFINEFRQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+     T ++ + + A R+    +      +  K   +  +   +E + 
Sbjct: 173 YFLGECGFQESTFYNVATHLKTVCRLAYREGLADVLLFDKAKISKGDNKLPKALDREALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   +         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKALRFDDLEEEMETARDIFLFACYTGAAYCDLMELKKSHLVRDDDGNLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E       +     +    +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRIKLLPEAIRLMEKLHSGERETLLPYIKYKNYQTCLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQK 390


>gi|257452338|ref|ZP_05617637.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
          Length = 262

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              +Y         L+ NS  + +   +Q +    ++   ++T   ++S     +   + 
Sbjct: 7   WKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFFHLQEKHAS 66

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + ++S++V  ++   +  V  +  L   + +++ + I  + K+  +QF+  +    
Sbjct: 67  NTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRKEEDTILFFEKDVWEQFRRAFENNL 126

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +  FE L  +G++  +        ++     I   +     TV       + L     
Sbjct: 127 RDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQKKESRTVFFSHRAKEALWNYCE 186

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHELM 308
            K            +       FK    K +G+   + +  R   A     AG    EL 
Sbjct: 187 EKGRKEGRIWDF--SEKTLRNIFKKYREKISGLENMTIYSFRHTFAITLLRAGMPKSELQ 244


>gi|211731863|gb|ACJ10160.1| integrase [Bacteriophage APSE-3]
 gi|211906277|gb|ACJ11656.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 98/347 (28%), Gaps = 57/347 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        +   ++       T       + +          S    +      +
Sbjct: 1   AQELHDKRKAELWRIAKLDDF--PNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWL 54

Query: 104 RKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQ------------------- 135
                   + IT   I         R      K   +SA +                   
Sbjct: 55  LYFSGTRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKA 114

Query: 136 -FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  ++ + + +  +++  I     ++ P  + + IR    ++ ++  +   E    R 
Sbjct: 115 KHLALLKSMMR-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRS 171

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             EF L +GLR S+        +           +  K+G  I V L D    +L     
Sbjct: 172 TVEFALATGLRRSNILNLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLG 231

Query: 251 GKETFFINNDKQKMNATQFSI------------WFKAKATKAGVN-KSAHGVRKFSATIS 297
             + +   +      +                  ++A   +AG+     H +R   A+  
Sbjct: 232 NHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWL 291

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +G     L    GW++V+    Y   A       +++++I  V D
Sbjct: 292 IQSGVPLSVLQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)]
          Length = 290

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATHLLEVGADIRTVREQLGHTDVKTTQIYTHVLDR 285


>gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 390

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/333 (9%), Positives = 75/333 (22%), Gaps = 73/333 (21%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP----- 130
           + ++ H    + ++   +       +    +   ++  I+  ++         TP     
Sbjct: 52  FLRTLHGADRSPHTIRVYAGRVAAFLGWCAEQGVEWSSISLANLARFKHFLAVTPHRGGR 111

Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184
               ++    LT++    ++  R   +       +  P+        +   +  QF+   
Sbjct: 112 LRSGTTVNATLTAVCEFLRFCARTGVIEQAVADRLAEPRWLRFTPAGFDAGESGQFRMVR 171

Query: 185 -------------------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV----- 214
                                          + R     +  SGLR  ++          
Sbjct: 172 ARMLKARAQATFPEALSAEQSQRVLACCRRPRERFIATLMHESGLRIGEALGLRRGDLHL 231

Query: 215 -------------QHLQNNIFSIKTQKTGTIITVELPDGFMKLL---------------- 245
                         H+     +                    +L                
Sbjct: 232 LPDSRTLGCAVLGAHIHIRHRANPNGALAKSPFPRSVPTSQAVLSTYADYQFERSEILGE 291

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
               +     +       M       +F+  AT+ G     H  R  +AT    AG    
Sbjct: 292 DDCDMVFVNLYHQPLGAPMTYRAAKAFFERLATECGFAVRPHMFRHTAATNWVRAGVDLD 351

Query: 306 ELMATYGWKTVDQAETYTKGADR-IRLGIKNSR 337
            +    G   +     Y    D   R  ++   
Sbjct: 352 VVQRLLGHAALGSTAVYLHARDEDKRRAVEAVA 384


>gi|255319001|ref|ZP_05360224.1| putative integrase/recombinase protein [Acinetobacter
           radioresistens SK82]
 gi|255303928|gb|EET83122.1| putative integrase/recombinase protein [Acinetobacter
           radioresistens SK82]
          Length = 339

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 89/303 (29%), Gaps = 22/303 (7%)

Query: 32  RIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           + R     +S       +   L+     ++ I    K     + L ++Y +       + 
Sbjct: 21  KKRYSVTRDSAKECEIWAMDKLSELRSGKKAIEQGEKPKYLFRDLCAKYYQEHGRHMRSA 80

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWA 147
            +        D+I     D          I     +RK     ++          +F +A
Sbjct: 81  RTINFKIKNLDRIAPNLADKSIYDFKPADIAEWRNNRKKEVKVATLRNEHAIYSAVFTYA 140

Query: 148 VRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDMQQFKSFWSEGSQPRLAF--E 197
           +++ ++  +          K +          +    + +    +   E S+  +A+   
Sbjct: 141 MKELFLIESNVWHSVTMPGKEKSRSQRITEEDQALMLKSLSWDGTTTPEISRHYVAWAFL 200

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F L + +R  +      Q+++     +   K G    V L     +LL            
Sbjct: 201 FALETAMRQGEILAMKRQNIKEGFVHLPVTKNGDSRNVPLSKEAKRLL------VLLPKT 254

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKT 315
           N     ++  +F   +     +AG+   + H  R  + T            L    G KT
Sbjct: 255 NKQLVPLDKDRFCATWMRAKKRAGLPHINFHDSRHEAITRMVKVRKLPVEVLAKITGHKT 314

Query: 316 VDQ 318
           +  
Sbjct: 315 ISM 317


>gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98]
          Length = 235

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 15/221 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
           S+  + L  +     +   +                  E    W                
Sbjct: 12  STVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEATALILAAGAV 71

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFM 242
           +     R      L +G R ++        +       +      K G    V L  G +
Sbjct: 72  ARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGAL 131

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATI 296
             L             ++    +++          F A   +AG+     H +R   A+ 
Sbjct: 132 LALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASW 191

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
               G + + +    G  ++  AE Y   + D  R  ++  
Sbjct: 192 LVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKL 232


>gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 KA   +AG+ K  + H +R   AT     G     +    G + V     YT  
Sbjct: 103 TIQRAIKAACRRAGITKHATPHTLRHSFATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162

Query: 326 A 326
            
Sbjct: 163 L 163


>gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1]
          Length = 457

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 94/330 (28%), Gaps = 59/330 (17%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI------ 119
           K  T   L   Y   A    ++ +     +   +  ++ +        IT +H+      
Sbjct: 130 KDITFGELAERYAAWAKSTRISGH---KMQRLLELHVLPRLHSMPAASITPQHLNELRSE 186

Query: 120 ---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY---------------VAI 155
                    R   E R  +  + +  L ++R ++ +A    +               V  
Sbjct: 187 LEQTTPLRGRGKAEGRGLSAQTVLHCLKAVREVYNYARETPHPDFPERMLYSGKNPAVLS 246

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCR 211
                V  P+     +R     ++    S+  +     S+        L +G+R  +  R
Sbjct: 247 RRGHGVRLPRSDARRLRILNDAEISALLSYRGQNVVETSELHDMILISLDTGMRAGELVR 306

Query: 212 AGVQHLQNNIFSIKTQ-----------KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
              + +  +  +I+             +T  +    L    + +L          F    
Sbjct: 307 LRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAESITMLRRRVGSPGLLFPGRG 366

Query: 261 KQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMATY 311
               N T  S          G+N            H +R   AT   +AG   + L    
Sbjct: 367 GAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRHTYATRMLEAGIDIYTLKELL 426

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISS 341
           G  +V   E Y    DR +       R++ 
Sbjct: 427 GHSSVAVTERYLHLCDRAKR-NAALARLTR 455


>gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M]
 gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M]
          Length = 359

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 90/340 (26%), Gaps = 64/340 (18%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
             L                      L++E+       + +  +  ++        R   D
Sbjct: 3   KELAAVVDDDGVWQLRGTAAEQFG-LVNEFLGYLADRNFSPRTCRAYAYDLLAFARWLRD 61

Query: 109 --FDYRKITTKHIRSG----------------------VESRKHTPSSAIQFLTSMRVLF 144
                 ++    +                           ++ + P++  + L ++  LF
Sbjct: 62  EQLGVAEVNVDVLLRFLTACREATLPGRPGGNVYSIRDGRNQGYAPATINRRLAAISSLF 121

Query: 145 KWAVRQE--------------------------YVAINPCLSVERPKRKTEGIRPWTKED 178
            +   ++                          + A     S  R +      R  ++E+
Sbjct: 122 AFREMRDPDARSLVGSSRAARLRSRGERSGLLAHTAKPKSRSQLRVREPRWLPRGLSREE 181

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
                  +    + R     +L SGLR ++     V  +      ++   K G   +V +
Sbjct: 182 SAALLGSF-RSWRDRAIGGLMLLSGLRSAEVLGLRVSDIDIARRWVRVLGKGGKERSVPI 240

Query: 238 PDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN-KSA 286
                  +    + +                +  + + A      F+    ++GV     
Sbjct: 241 DTDVAGAIQTYLLAERPETDADELFVVAKGAHRGRPLTAAGLRTVFRYHRERSGVAAGHP 300

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R    T  A+AG     + A  G   VD A  Y   A
Sbjct: 301 HALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHLA 340


>gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum]
 gi|1098132|prf||2115270D integrase
          Length = 259

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 76/243 (31%), Gaps = 27/243 (11%)

Query: 105 KSGDFDYRKITTKHIRSGV---ESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCL 159
             G     ++  + I   +   + +  +PS +     +  +R L K             L
Sbjct: 4   HFGKIP-TELDPEQIHDYLFYLQKKSKSPSQSYFKHTVYGLRFLLK-----SEGLSYDFL 57

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
           S+   KR+ +     +K+++ Q  S      + ++    L   GLRC +     +  L  
Sbjct: 58  SLPEIKREKKLPVVLSKQEVWQMLSGCKL-LKHKILIGILYGCGLRCMEVRNLRLCDLDF 116

Query: 220 NIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN-----------DKQKMNA 266
           +     +   K      + L +  ++ L      ++                    + + 
Sbjct: 117 DRKQLKVVQGKGKKDRYLPLSEHLIRGLKKYIEAEKPEDYLFGEPRGNRAGGEFDSRYSQ 176

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                  K  +  A +    S H +R   AT   + G     +    G +++D    Y +
Sbjct: 177 RGVQWAVKQASKTANILKEVSVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQ 236

Query: 325 GAD 327
            A 
Sbjct: 237 IAQ 239


>gi|167553414|ref|ZP_02347163.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322115|gb|EDZ09954.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 359

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 103/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP ++T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRYLT-YRKASKSFFWR-NPVTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       SL+VN+     +    +  K G+    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 VTTRHIAKFLESWITEGKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +         LA +  L +G R  D        + +N   +   KTG 
Sbjct: 179 RLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAIPLSLTLQAPGLRPGTVIDRCRLVSRTDFMISAGIRENSPTGNIHPDGLTKTFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GVN      + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KASGVNFSNNPPTFHEIR-SLAGRLYKNELGEEFAQKLLGHTSENTKKLYLDERDNK 354


>gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 409

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 83/280 (29%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVE 124
            +  I  Y K       A ++     + +  ++      +   D    ++    I     
Sbjct: 112 FREQIESY-KEKIGKGKAESTYRGLVADYKSLLLFMKTQKNIEDIAIDELEKSFIEDYYT 170

Query: 125 SRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T  +A       + +M+ L   A  + ++ ++P  S E            T+E++Q
Sbjct: 171 WMLGTAGNANATAFNRVNTMKWLMYIAQEKGWLRVHPFTSFECKPEYK-KRSFLTEEELQ 229

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN------NIFSIKTQKTGT 231
           +      +  + R   +  L+   +GL  +D       ++         +   + +    
Sbjct: 230 RIIHVDLKYKRQRAMRDMFLFMCFTGLAYADLRAITYDNIHTDSDGGTWLMGNRIKTGVA 289

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289
            +   LP     +     + ++    +            +  +    K   +   + H  
Sbjct: 290 YVVKLLPIAIELIEKYRGVDEKKDSPDCVFPVGEYNTMFLSLRIIGKKCDCHTEVTPHIG 349

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A ++   G     L    G  ++   + Y +  +  
Sbjct: 350 RHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAELINPK 389


>gi|331007744|ref|ZP_08330870.1| Site-specific recombinase, phage integrase family [gamma
           proteobacterium IMCC1989]
 gi|330418452|gb|EGG92992.1| Site-specific recombinase, phage integrase family [gamma
           proteobacterium IMCC1989]
          Length = 352

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 93/346 (26%), Gaps = 33/346 (9%)

Query: 11  VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           V K     G   Y      +K                                   +   
Sbjct: 6   VVKRLKADGTPRYTCNVRVKKNGKVLYSEARTFSKAGSAKEW-GKKRVGEIENEGINKTA 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
              TL  LI +Y    H          +  +    +   +  +    +I   H+    + 
Sbjct: 65  DTITLGGLIKKYIDDPHIEI-----GRTKGNVLRLVSDCEIANRILSEIEAHHLVEHCKH 119

Query: 126 RKHTPS---SAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           RK   +   +    ++ +R + K     W        I     V             T+ 
Sbjct: 120 RKEAGAGKATISHDVSYIRSVLKAAKPTWGYDVNDNCIIEAYPVLHSMELVGKANRRTRR 179

Query: 178 DMQQFKSFWSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
              +       G + R              EF + S +R  + C    + +     S+  
Sbjct: 180 PTTKELEKLKAGLKQRQDHQGAKIPFIDILEFSILSCMRIGEVCSILWEDVDEAQKSVTV 239

Query: 227 QKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
           +              + LL       ++    ++     N+   S+ F+    + G+ + 
Sbjct: 240 RNRKDPRKKTGNHMVVPLLGGAWELLQKQPKTDDRIFPFNSRSVSVGFQRVRNELGIEDL 299

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
             H +R+  A++  + G    E+    G + ++   + YT+   + 
Sbjct: 300 RYHDLRREGASLLFEKGYVIDEVAQVTGHRNINTLWQIYTELFPKR 345


>gi|295099066|emb|CBK88155.1| Phage integrase family. [Eubacterium cylindroides T2-87]
          Length = 462

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 110/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R+GK  +IY +    G R +    +E+               K+E  +   +K  TL 
Sbjct: 5   RERNGKFNVIYSYTNEKGERKQKWETYETKAEAKRRK--KEIEYKKEMGSFVVRKCKTLD 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            LI+EY       + A+++     S   + I+   GD    +I T+ I    +S      
Sbjct: 63  ELITEYVALYGKENWALSTYEGNVSLINNYILPVIGDAKLSEINTRFIERYYQSLLKRRA 122

Query: 131 ----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+       +R  F+ AV+ E +  NPC     PK K++    W
Sbjct: 123 VINPLNKTSRNEFVSSSTVRDVNKLLRNCFEQAVKWELMEKNPCTHATVPKHKSQKRDIW 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T + +        E  + +LA        LR  +        +  +  +I+  +    I 
Sbjct: 183 TADTLMYAL-SVCEDERLKLAINLSFSCSLRLGELLGLTWDCVDISPEAIEENRAYVFIN 241

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K+   +   K     +     F           
Sbjct: 242 KESQRIRKESLNALDGKDVLLVFPTNHKKNSTVRILKTPKTESSVRKIFLPKSVANMLVD 301

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K       +     H  R  
Sbjct: 302 WKAEQDEMKEILGDEYMDYNLVMASTFGLPLGDGAIRGPLKKLIEDYNLPPVVFHSFRHS 361

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   V+   + Y+   D  R 
Sbjct: 362 SVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRR 402


>gi|291522979|emb|CBK81272.1| Phage integrase family [Coprococcus catus GD/7]
          Length = 463

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 110/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R+GK  +IY +    G R +    +E+               K+E  +   +K  TL 
Sbjct: 5   RERNGKFNVIYSYTNEKGERKQKWETYETKAEAKRRK--KEIEYKKEMGSFVVRKCKTLD 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            LI+EY       + A+++     S   + I+   GD    +I T+ I    +S      
Sbjct: 63  ELITEYVALYGKENWALSTYEGNVSLINNYILPVIGDAKLSEINTRFIERYYQSLLKRRA 122

Query: 131 ----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+       +R  F+ AV+ E +  NPC     PK K++    W
Sbjct: 123 VINPLNKTSRNEFVSSSTVRDVNKLLRNCFEQAVKWELMEKNPCTHATVPKHKSQKRDIW 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T + +        E  + +LA        LR  +        +  +  +I+  +    I 
Sbjct: 183 TADTLMYAL-SVCEDERLKLAINLSFSCSLRLGELLGLTWDCVDISPEAIEENRAYVFIN 241

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K+   +   K     +     F           
Sbjct: 242 KESQRIRKESLNALDGKDVLLVFPTNHKKNSTVRILKTPKTESSVRKIFLPKSVANMLVE 301

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K       +     H  R  
Sbjct: 302 WKAEQDEMKEILGDEYMDYNLVMASTFGLPLGDGAIRGPLKKLIEDYNLPPVVFHSFRHS 361

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   V+   + Y+   D  R 
Sbjct: 362 SVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRR 402


>gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3]
          Length = 210

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 269 FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                +   +  G+    + H +R   AT     G     +    G  ++   + YT G 
Sbjct: 136 IQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GV 194

Query: 327 DRIRL 331
           D  RL
Sbjct: 195 DASRL 199


>gi|126729757|ref|ZP_01745570.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
 gi|126709876|gb|EBA08929.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37]
          Length = 364

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 78/332 (23%), Gaps = 27/332 (8%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            G   +++      R          F      A+  +   +           TL      
Sbjct: 6   KGSRFWHYDFQIRGRRFHGSCGTEDFEE--AKAVEAAARVKAKHAPQITGRFTLSEAFGT 63

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQ 135
           Y         +  + +S       +I   G      +    +           + ++  +
Sbjct: 64  YYSDVCAHQPSARTAMSHFRSVLGVID--GKTHLDALKQSDLTRFRSVRRWHVSGATINR 121

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L +M    ++  +     +      +  K      R  +    +Q + F          
Sbjct: 122 TLQAMGRALRYMEKHHGAKLAEL-DFKAVKLAEPKERVRSLTLAEQGRLFEKLRPDLLPL 180

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDGF 241
            +F L +G R +  C    + + ++   +                      I   +    
Sbjct: 181 VKFALMTGARQASICNLRWRDIDHDAARMTLQMKTDSKTEAKTMAFPMSREIKALIGALP 240

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKATKAGV-NKSAHGVRKFSAT 295
                       TF + N K+               F A    AG+ +   H +R   AT
Sbjct: 241 RAEHPPHRDYVFTFEVQNRKKPERRRIIQNSTAFEHFAAAVNAAGIEDFRFHDLRHTFAT 300

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                      +    G   +     Y    D
Sbjct: 301 RMLRQTQNLKLVSRLLGHSEITTTSRYAHVLD 332


>gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 77/289 (26%), Gaps = 36/289 (12%)

Query: 70  TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHI 119
           +L  L+  +   +       + ++  S+   F Q ++ +           ++ +I    I
Sbjct: 6   SLAPLLERFFTQRLMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLI 65

Query: 120 RSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + ++        +  S    LT++   F++A  +          V     K        
Sbjct: 66  VAFLDDLEKRQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQ 125

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
               Q+              G +      F + +GLR S+        L           
Sbjct: 126 FLTRQEVDALLAAPDQRTWSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVI 185

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKA- 280
            K        +    + +L       +       F N   +++               A 
Sbjct: 186 GKGRKERCTPIVRSTLAVLKAWLREPKRGEGDVLFPNARGERLTVHGVQYLLNKHRETAS 245

Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      + H +R   A     AG     +    G ++V+  + Y
Sbjct: 246 KVCPSLKHKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|91791684|ref|YP_561335.1| phage integrase [Shewanella denitrificans OS217]
 gi|91713686|gb|ABE53612.1| phage integrase [Shewanella denitrificans OS217]
          Length = 404

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 108/387 (27%), Gaps = 49/387 (12%)

Query: 3   PSLR-LPPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSAL------- 51
           P    +   +           +  R    G  + I L      +   A   A        
Sbjct: 17  PKRHPIGGGLYFVVRNSATPYWMLRYTSNGKRKEITLGQFPYLSLADAKAEAAIQKRDIN 76

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDF 109
            GS P         +    +  L +++ +S     L      +  + +         G+ 
Sbjct: 77  AGSDPLIVRQRIKEQSIKVVDDLFNDWYESDLVKRLKHPHIPQRVYRNDIK---PAIGEI 133

Query: 110 DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------S 160
              ++  + IR+ V+      P++A   L  ++ LF+  ++ + +  NP           
Sbjct: 134 PIDQVNARDIRAIVQKIAQERPTTANDALMYLKQLFRHGIKLDLLGNNPASAFTVSDAGG 193

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           VE  K +        K       +  S      LA   L+  GLR S+ C A     + +
Sbjct: 194 VELSKDRALTFPEIEKAFKLFKANAMSFTRDNYLACAMLVTLGLRKSELCCAMWNEFELD 253

Query: 221 IFSIKTQKTGT----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                  +  +                    +K+ +            + K  M     +
Sbjct: 254 KALWHLPEGRSKTGAPITIPLPRQAMEWLNELKIRSCGSAYVFPARRTSSKPHMGNDTLN 313

Query: 271 IWFKAK-ATKAGVN------------KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                    + G               + H +R+   T++A  G   H        K   
Sbjct: 314 RAISKLFGREPGRKVQPPNLMGDMLLFTPHDLRRTFRTLAASQGVPGHVAERCLNHKLKG 373

Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344
               Y +  D +    +   +++ ++D
Sbjct: 374 VEGIYDRH-DYLEERKEAHAKVADLLD 399


>gi|332098668|gb|EGJ03634.1| integrase [Shigella boydii 3594-74]
          Length = 262

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 26/237 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 14  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 72

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E    +   EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 73  CPE--PLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 130

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKAKATKAGVN-KSAHG 288
            ++L         +     +                    +  +KA   +AG++    H 
Sbjct: 131 CRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHD 190

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +R   A+    AG     L    GW++++    Y        L   +    +  +DS
Sbjct: 191 LRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPNHLTEHARQIDS 241


>gi|317154905|ref|YP_004122953.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945156|gb|ADU64207.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 81/319 (25%), Gaps = 16/319 (5%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
            GK          R+ ++      +    + +     T        P     +L     E
Sbjct: 8   SGKYRATKMINGKRKNKM--FKSKSEAKRWEA---QQTEGSWSAVQPNLVSVSLLEWSVE 62

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGV--ESRKHTPSSAI 134
           Y + +                F+++     +      +T       +   ++  + ++A 
Sbjct: 63  YLEYSKQRHTPKTYLEEKVPAFNRLFEAIPNTTPVTDLTVTACLKILTLRAQDVSGNAAN 122

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +   ++   + W  +   +  +            +  R    E       +     + ++
Sbjct: 123 KDRKNLAAAWTWGTKYLGMPRDNPFVAVDRFPSDQQARYMPPESDFWK-VYEVARPKDQV 181

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMT 248
               LL++G R S+  R     +  +   I+               + L       L   
Sbjct: 182 FLLTLLHTGARRSELLRLTWDDINLDTGMIRLWTRKRANGSLEFDWLWLTSRLHDALQKH 241

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
              + +  +                K    +AGV   + HG+R   A+  A  G     +
Sbjct: 242 YEQRISEHVFCRSDGTPYKWRQHLMKILCKRAGVKHFTFHGIRHLLASKMAQKGVDIPNI 301

Query: 308 MATYGWKTVDQAETYTKGA 326
                         Y    
Sbjct: 302 RDILRHTNSMTTTRYIHRL 320


>gi|253990617|ref|YP_003041973.1| phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782067|emb|CAQ85231.1| Putative phage integrase [Photorhabdus asymbiotica]
          Length = 345

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 113/344 (32%), Gaps = 39/344 (11%)

Query: 1   MTPSLR------LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           M    +      LP  V+K      K  YY +    + I L     S  +    +   G 
Sbjct: 1   MARKRKDHNDNKLPTRVSKT-----KYSYYLKTKDNKTIMLGPLTMS--MTELWAKYDGE 53

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
              ++ I        T   L   +  S  +  L+  S+         I++  G  +   I
Sbjct: 54  IANKKII-------MTFSKLWGMHLNSPAFTELSARSQKDKLQGAKNILKVFGHINVDNI 106

Query: 115 TTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             ++IR  ++ R   + + A   L+ M V F W   + Y  INPC  V++   K    R 
Sbjct: 107 KPEYIRQYMDIRGTQSKTQANHELSYMSVAFGWGYERGYCKINPCSGVKKFSLKN---RD 163

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
               D +   ++       ++A E       R  D  +     +      IK  KTG   
Sbjct: 164 KYITDEEYQITYDVGSPIVKIAMEISYLCASRIGDILKLKHSQISEQGIYIKQGKTGAKQ 223

Query: 234 TVELPDGFMK------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------G 281
             +  D   +       L      +    +N D  +   + F   ++    KA       
Sbjct: 224 IKQWTDRLHETINYAVELFPPTSTQSYVILNADGNQFTKSGFDNHWREAKEKAAELLGRK 283

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           ++ + H ++  + +       ++ +     G KT  Q + Y + 
Sbjct: 284 IDFTFHDIKAKAISDF---EGSSKDKQLFSGHKTESQVKVYDRK 324


>gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium]
          Length = 160

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323
            AT    AG     +    G   V   + YT
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160


>gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   T +  +       +  ++ T      KA + +AG+ K  + H +R   AT 
Sbjct: 74  WSWQYVFPSTRLSVDPRSGKTRRHHLHETGVQKMVKAASVRAGITKRVTVHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G   V     YT   
Sbjct: 134 LLEAGYDIRTVQELLGHSDVSTTMIYTHVL 163


>gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 429

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 24/293 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTK 117
           KP TL  L  E+ +             +  S+E+ ++ +               R +  +
Sbjct: 114 KPFTLLALFREHNEEFRKRVGVDRKEETYESYENSYNILASFVKKRKEKEDVALRSLDRE 173

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI 171
                       R+  P +  + L  ++ + K AV Q  +  +P   L  E P+RK+  +
Sbjct: 174 FYDDFEIFLRTDREMKPKTVHEHLYRLKKMTKRAVSQGTLRRDPYGKLHPELPRRKSRHL 233

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    + + +         + R  F F  ++GL  +D  R   + +  +           
Sbjct: 234 KLEDLKKLMETPVDKPNLQRVRDWFLFATFTGLSYADLKRLSEKDITQSDDGTYWIHI-- 291

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAH 287
                     ++LL +     E +       ++       +      + G     + + H
Sbjct: 292 RRQKTETPSAIRLLNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFH 351

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R    T      G     +    G K++   + Y K  DR     ++ +R+
Sbjct: 352 KARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRK--VDEDMKRL 402


>gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827]
 gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827]
          Length = 324

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 96/304 (31%), Gaps = 41/304 (13%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRK 127
             + ++      + ++  ++            + + R+ G+     +T  H+RS      
Sbjct: 8   EAFFQARRPRKDSPHTTAAYRRDLAGVNALLGEVVGREVGELRVEDLTGAHLRSAFGVFA 67

Query: 128 HTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183
            +   SS ++  ++      + V ++ V  NP  +V RPK      +P   ED  +    
Sbjct: 68  DSHAKSSVLRAWSTWNQFLTFLVAEDLVPGNPMGAVARPKTPPLVPKPLRGEDTPERLLA 127

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231
                   +      +  L     L +GLR  +     +  +       +    G     
Sbjct: 128 AAAEGARKARDPWPERDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLHVLGKGNRD 187

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKA 280
               I   +     + LA                   +   + +         ++    A
Sbjct: 188 RSVPIEPAMERVVDEYLASCRKRFPQGRFDRGSALLRDRHGEPIGRGGLEYLVRSCFRWA 247

Query: 281 GVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
           G++         H +R   AT  A+ GATA E+MA  G  ++  ++ Y +   R +    
Sbjct: 248 GLHDRVPSGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAREQRSAV 307

Query: 335 NSRR 338
              R
Sbjct: 308 AGNR 311


>gi|168483737|ref|ZP_02708689.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|168484789|ref|ZP_02709734.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|307066655|ref|YP_003875621.1| integrase [Streptococcus pneumoniae AP200]
 gi|172042030|gb|EDT50076.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|172043008|gb|EDT51054.1| integrase [Streptococcus pneumoniae CDC1873-00]
 gi|306408192|gb|ADM83619.1| Integrase [Streptococcus pneumoniae AP200]
          Length = 382

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGFTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSTLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|148284245|ref|YP_001248335.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284475|ref|YP_001248565.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284530|ref|YP_001248620.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284668|ref|YP_001248758.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284694|ref|YP_001248784.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284733|ref|YP_001248823.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284760|ref|YP_001248850.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148284814|ref|YP_001248904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285024|ref|YP_001249114.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|148285095|ref|YP_001249185.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739684|emb|CAM79481.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739914|emb|CAM79904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146739969|emb|CAM80008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740107|emb|CAM80274.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740133|emb|CAM80327.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740172|emb|CAM80404.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740199|emb|CAM80478.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740253|emb|CAM80591.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740463|emb|CAM80988.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
 gi|146740534|emb|CAM81117.1| phage-related integrase [Orientia tsutsugamushi str. Boryong]
          Length = 414

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 92/281 (32%), Gaps = 14/281 (4%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFD 110
                R      +    T K L  +Y +        + +    E+        +   +  
Sbjct: 107 EENENRIKERERKANDITFKELCYKYIEEYA----KIYTINWKENADRVHTYAQALYEKK 162

Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             KI    I        ++   ++A   L ++R +F  A++   +  NP L +E+ K + 
Sbjct: 163 ISKIRMSDIEPIFNDISKEGKYATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQA 222

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIK 225
              R    E  +  +    E S   R      LY+G R S+       ++      + I 
Sbjct: 223 RERRLSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIP 282

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGVN 283
             K G    + L D  M++L    +   + ++       +      +  +K    KA + 
Sbjct: 283 KTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIK 342

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               H +R+  A+   DAG +   +         +    YT
Sbjct: 343 NFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYT 383


>gi|331091365|ref|ZP_08340204.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404229|gb|EGG83776.1| hypothetical protein HMPREF9477_00847 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 406

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/408 (12%), Positives = 109/408 (26%), Gaps = 72/408 (17%)

Query: 1   MTPSLRLPPFVTKERTRH----GKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGST 55
           M  S + P         +    G+  Y +     G+R+ +                    
Sbjct: 1   MAISRKDPKGRKLREGENWRNDGRYSYRYTDVRTGKRLTVYAQDLPELREKEKQI--AKD 58

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114
            +   +     K  TL  L   Y  +     LA  +R+S+   + +++  + G+    ++
Sbjct: 59  MEDNILTDGAIKKMTLNTLFERYMAT---RELADTTRVSYVRAWENRVKDEIGNIKVVQL 115

Query: 115 TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL----SVERPKRK 167
              HI++            S+       +    + AV  + +  NP         +P  +
Sbjct: 116 LPSHIKAYYAKLSKAGYAYSTIKYIHNLLYPALEMAVDDDIIRKNPAKSSISDYGKPAEE 175

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
            E +    +E   +F    +  +        ++ +G+RC +      + +          
Sbjct: 176 KEALTVSQQERFMEFVKQSNVYNTYYPMLTIMIGTGVRCGELIGLTWKDVNIKAKTVSVD 235

Query: 219 -----------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                              +    I  + +     K              +   +    +
Sbjct: 236 HQLIYKNLGDGCKFHISTPKTESGIRIIPMTQEVAKAFEEQRKINFMLAKDKSIEVDGYS 295

Query: 268 QFSI------------------------------WFKAKATKAGV--NKSAHGVRKFSAT 295
            F                                  K +  KA +    SAH +R  + T
Sbjct: 296 GFVFTAKSGRPLMPSAVNSVLYNIVDAYNKTEVERAKKEHRKAELLLKFSAHVMRHTACT 355

Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSV 342
             A+       L    G   +D     Y    +  R+  +   R+ S+
Sbjct: 356 RMAECRMDVKVLQYIMGHAHIDVTMEVYNHIGELARIENE-IARLDSM 402


>gi|323136403|ref|ZP_08071485.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322398477|gb|EFY00997.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 355

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 95/320 (29%), Gaps = 20/320 (6%)

Query: 17  RHGKIIYYF----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R     +Y       G  +R+    P            +     +       R+   +L+
Sbjct: 7   RPDSPYWYAEITNHDGKIKRVSTNIPRGRA-TQKRALEVALQKEQELKEQGARRLSVSLE 65

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPS 131
               E+  ++    L  ++R  +     +I++ +        +T   +R  V  R+   +
Sbjct: 66  QASFEFLDAST-KWLKASTRRHYALKLTKILKATPIRPALCDLTVDWVRDFVRLRREATT 124

Query: 132 --SAIQFLTSMRVLFKWAVRQEYV-----AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                + LT++  + ++A+ +E               +   +  +  R     ++++   
Sbjct: 125 DIQIRRELTALSSVIEFAIDREMEGAPKENPCHHYRKKGLAQPVKKPRWLKLPEVRKLLD 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPD 239
                         +L +G+R  ++       +  +         + +     I      
Sbjct: 185 AAKGDRFWHPFITLILETGMRHEEALGLPWSEVDLDRKIITLGWEREKAKRGRIIPLSNT 244

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
               L  ++ +    +   N +           ++    +AGV K   H +R   A+ + 
Sbjct: 245 ALHTLTHLSRLTACPYVFVNHRTGDRYKSIGAGWRRLRLRAGVPKARIHDLRHTFASWTR 304

Query: 299 DAGATAHELMATYGWKTVDQ 318
            +G +  +     G      
Sbjct: 305 QSGMSREDRKDVLGHLDDTT 324


>gi|301794240|emb|CBW36660.1| Integrase [Streptococcus pneumoniae INV104]
          Length = 387

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 110/362 (30%), Gaps = 52/362 (14%)

Query: 10  FVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + ++  ++G+ +YY        +    +            +         +     Y  
Sbjct: 2   NIIEKIKKNGQRVYYASVYLGVDQLTGKKARTTVTATTKKGVKVKARDAINTFAANGYTV 61

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121
             +   TT   L+  +  S    ++  N+R S +      ++   GD+   K+TT  ++ 
Sbjct: 62  KDKPTITTYNELVKVWWDSYK-NTVKPNTRQSMDGLVRVHLLPVFGDYKLSKLTTPILQQ 120

Query: 122 GVESR------KHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-- 171
            V             + A   L     + + K+ V  + +  NP   V  P+++ +    
Sbjct: 121 QVNKWADKANKGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKEKAA 180

Query: 172 -RPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217
            +    ++++QF  +         E     + ++ LL +G R S++       +      
Sbjct: 181 VKYLDNKELKQFLDYLDTLNQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLESGV 240

Query: 218 -------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-----------N 259
                           + +     + +    + LL      ++                 
Sbjct: 241 ISINKTLNRYQEINSPKSSAGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSVF 300

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
            ++   A             AGV N S HG R    T+   A A+  ++    G   +  
Sbjct: 301 TEKYAYACNLRKRLNKHFDAAGVTNVSFHGFRHTHTTMMLYAQASPKDVQYRLGHSNLMI 360

Query: 319 AE 320
            E
Sbjct: 361 TE 362


>gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 21/281 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YR+              +E  +        G   + +I         E      
Sbjct: 76  GDFLEYYRQQLRKHDQK------WEFVYLHFKNFVHGKCTFEEIDIDLCNKFREYLLSAK 129

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + T +SA  + ++ R   K   R   +  N    +E+ + +       + E++ 
Sbjct: 130 KLRRNGRITRNSASGYWSTFRGFLKILYRNGLIKTNVNDFLEKIETEDTMKEALSVEELY 189

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q      +    ++A  F   + LR SD      + + +     K     T         
Sbjct: 190 QLAETPCKKPIVKIASLFSCMTSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAEDII 249

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +   +  K     AG+ K  + H  R+  AT+  
Sbjct: 250 PISEEALGLIGYSSDKKGLVFKGLMRSWTQMPMKEWIRSAGITKNITFHSYRRTFATLQG 309

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            AG     + +    K++     Y K  D  +   + S++I
Sbjct: 310 AAGTDIRTIQSIMAHKSITTTMRYMKVVDSNKR--EASKKI 348


>gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9]
 gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9]
          Length = 98

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG+ K  + H +R   AT    +G     +    G   V     YT   
Sbjct: 26  VEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 77


>gi|52841319|ref|YP_095118.1| phage related integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52628430|gb|AAU27171.1| phage related integrase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 414

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 98/331 (29%), Gaps = 27/331 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEY 78
           F      RI L +  E T   A   AL                 +   +  TL  +  +Y
Sbjct: 52  FINKKRCRITLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDY 111

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136
            ++    +L   +  ++    D+            IT   I    E     H  + A   
Sbjct: 112 LRTR--KNLKPRTIDNYTHILDKAFTHWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLA 169

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--------------DMQQF 182
           +  +R LF +A  Q        L ++ P ++    R W +                    
Sbjct: 170 MRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIEKRKTYIKSHELAAWYTSL 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +   +   +  L    L     + + + +     L+   F+I T K     T+ L D   
Sbjct: 230 QEIQNVTLRDYLLLILLTGLRRQEAATLKWSDLDLKAKTFTINTTKNNESHTLPLSDFLY 289

Query: 243 KLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            LL          +I        +  +           +GV+ + H +R+   TI+    
Sbjct: 290 DLLIARKEKAINDYIFPGSGTAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLD 349

Query: 302 ATAHELMATYGWK-TVDQAETYTKGADRIRL 331
             A+ L      K + D    Y    D  RL
Sbjct: 350 IPAYALKRLMNHKMSSDVTAGYI-IVDVERL 379


>gi|30063898|ref|NP_838069.1| putative integrase [Shigella flexneri 2a str. 2457T]
 gi|114330695|ref|YP_746917.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114332212|ref|YP_748434.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|126640728|ref|YP_001083712.1| phage integrase family protein [Acinetobacter baumannii ATCC 17978]
 gi|260557740|ref|ZP_05829954.1| phage integrase [Acinetobacter baumannii ATCC 19606]
 gi|296104179|ref|YP_003614325.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|309783611|ref|ZP_07678261.1| phage integrase family protein [Shigella dysenteriae 1617]
 gi|30042153|gb|AAP17879.1| putative integrase [Shigella flexneri 2a str. 2457T]
 gi|114307709|gb|ABI58952.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|114309226|gb|ABI60469.1| phage integrase family protein [Nitrosomonas eutropha C91]
 gi|126386612|gb|ABO11110.1| phage integrase family protein [Acinetobacter baumannii ATCC 17978]
 gi|260408913|gb|EEX02217.1| phage integrase [Acinetobacter baumannii ATCC 19606]
 gi|295058638|gb|ADF63376.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|308928507|gb|EFP73964.1| phage integrase family protein [Shigella dysenteriae 1617]
 gi|313650991|gb|EFS15391.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
          Length = 400

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 99/313 (31%), Gaps = 26/313 (8%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102
               ++A      ++    +  K   T      ++ +      +A ++R    S +++ +
Sbjct: 72  AKKMVAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSVYEREL 128

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
             K  +    +IT + +R+  ++      P++A+     +  +F+WA+ +     NP   
Sbjct: 129 KPKFSNQKLVEITHEDLRALADAIVERGAPATAVHVREIVLQVFRWAIERGQKVENPAEL 188

Query: 161 VERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           V          R           M Q+          R A + LL + +R S+   A   
Sbjct: 189 VRPTSIARFEPRDRALTPEEIGLMYQYMERVGTSPTNRAAAKLLLLTMVRKSELTNATWS 248

Query: 216 HLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKET--------FFINNDKQKMNA 266
            +  +       ++        L     + L +    K              +    M+A
Sbjct: 249 EINFSEALWTIPKERMKRRNPHLVFLSQQALDIFIAMKTFAGGSDFVLPSRYDSDAPMSA 308

Query: 267 TQFSIWF---KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +         A K G + +    H +R+ ++T+  +AG     +      +      
Sbjct: 309 ATLNQVLTLTYKAAQKDGKSLTKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQKGVRA 368

Query: 321 TYTKGADRIRLGI 333
            Y K   R +   
Sbjct: 369 VYNKAEYREQRAA 381


>gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 99/357 (27%), Gaps = 40/357 (11%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTG-----ST 55
            + +PP +   K     GK +        +RI L            Y   +       + 
Sbjct: 40  KMDVPPRLWDVKNSRASGKSV------EAQRINLAVDKIRVEVNRRYQELMQTDGYVTAA 93

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------ 106
             ++       K  TL  L  ++          S A  +   + +  + I          
Sbjct: 94  KLKDAYLGIGVKQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKR 153

Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D   +++    I          +K   ++   ++ +++ +   A     +  NP     
Sbjct: 154 EDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIALKHIVSIARNDGRLPFNPFAGYI 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               ++      T+ ++Q       + +     R  F F +++GL  SD        LQ 
Sbjct: 214 N-SPESVDRGYLTQTEIQTLMDAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTADRLQT 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKA 275
                    T         +  ++LL +     E +       +     +    +   K 
Sbjct: 273 FFDGNLWIIT--RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKD 330

Query: 276 KATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + G       H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 331 IGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 387


>gi|315169315|gb|EFU13332.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
          Length = 372

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 112/377 (29%), Gaps = 54/377 (14%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63
            V K++ + GK  +    G    G+RI   +  +        AY   +     KRE    
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFKTAKEAKKAYNQFMIDYQEKRE---- 60

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T      EY K  +   +   +  +     +  +    +     I T  ++  +
Sbjct: 61  ----KITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINTIETVDLQKLI 116

Query: 124 ESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
                          +P      + +++ +F+ A    ++  +    V R + + + +  
Sbjct: 117 NYLSGEYRTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNI 176

Query: 174 WTKEDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKT 226
           WT +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT
Sbjct: 177 WTIDDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKT 236

Query: 227 QKTGTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ------- 268
                                      + L +  I +E           +          
Sbjct: 237 MLVKNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKST 296

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
              W K     A V     H +R   A++       +  +    G   +    E Y    
Sbjct: 297 THGWLKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLY 356

Query: 327 DRIRLGIKNSRRISSVV 343
           +        S++++ + 
Sbjct: 357 NGR--MNDVSKKLTDLK 371


>gi|260868890|ref|YP_003235292.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257765246|dbj|BAI36741.1| putative integrase [Escherichia coli O111:H- str. 11128]
          Length = 413

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 102/343 (29%), Gaps = 34/343 (9%)

Query: 16  TRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTGST-----PKRE 59
              G  ++   Y+R    +RI L +                 Y + +   T      +++
Sbjct: 36  KPSGSKLWRFSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALIRAGTDPQDHERQK 95

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKH 118
                R++  T + + + + +     +LA N+           +    G+     +T + 
Sbjct: 96  RETEARRQGNTFENVATAWYQVKISQNLAPNTIKDIWRSLEKYVFPFIGNTPIDTLTARR 155

Query: 119 IRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               +   K   +  +  + L  +  +  +A     +  NP ++V +           T 
Sbjct: 156 FVEVLTPIKERGNLETLKRVLQRVNEVMDYAANSGMIDANPAMNVRKAFPSPVKKHMPTI 215

Query: 177 EDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQ 227
                    Q  S  +   Q RL  E+ L +  R  ++  A  + +              
Sbjct: 216 RPEQLPELMQALSVSATERQTRLLIEWQLLTVTRPVEASSARWEEIDMEAQRWTIPAGRM 275

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----AGVN 283
           K      + L D  M +L                 K      +      A +    AGV 
Sbjct: 276 KMRRDHVIPLCDQAMAVLEAMKPISHHRDYVFPSLKDPRQPMNSQTANAALRRMGFAGVL 335

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 336 VS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  +   + I  +       +  ++     +  K     +GVNK  + H 
Sbjct: 66  KYRGASREWAWQFVFPSSRISLDPRTSVRRRHHVDENVLQVAVKRAVRASGVNKPATCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|312962927|ref|ZP_07777414.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens WH6]
 gi|311282954|gb|EFQ61548.1| site-specific recombinase, phage integrase family [Pseudomonas
           fluorescens WH6]
          Length = 445

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/371 (11%), Positives = 89/371 (23%), Gaps = 34/371 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            +       G   +  R             G    +               ++      E
Sbjct: 65  GLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALARDKAADLRKVVSSGADPLE 124

Query: 60  YINSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
              S +         T +     + K+     LA ++     +Y D+ I+   GD    +
Sbjct: 125 QKRSAKAAIDAAKARTFRAAAEAWLKAKEEKGLAPSTINKIRTYLDKDILPALGDKPLDE 184

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT         S +     + A +  T +  +F  A+       +P   +     +    
Sbjct: 185 ITRTDCADLQASLEARDAHNVAEKCRTWINQIFGRAIGLGLTENDPGSRLRDIAAQAPKT 244

Query: 172 RPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
           R           +  Q           R A    +++  R      A  +          
Sbjct: 245 RQHPHLLEPELAEFLQALKNTPSRLTARTAAWLCIWTASRPGMVRLAEWKEFDLEKAVWT 304

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKA 280
                  +    +     + +            +          N T             
Sbjct: 305 TPAAKMKMRRDFVCPLPHQAVTALRDLHNLTGRSRWLFPGVGAKNPTISENTINKVFATI 364

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKN 335
           G       HG R  ++T+  + G     + A    K    +  Y K      R+ +    
Sbjct: 365 GYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEGISGVYNKAQYFEQRVNMMQWY 424

Query: 336 SRRISSVVDSD 346
           +  + S+V  +
Sbjct: 425 ADHLDSLVAGN 435


>gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 286

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/278 (9%), Positives = 74/278 (26%), Gaps = 20/278 (7%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L   +R      +++ N+  ++     Q++           T   +R         + P+
Sbjct: 11  LAESFRLYLRKKNMSGNTGDAYGRAIRQLLSLY---PVP--TESLLRKYRSLLIANYRPA 65

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  Q + ++     +   ++               K             +         +
Sbjct: 66  TINQRIYAVNHFLLFLEEEQPELSPDLSGFRLRSVKIPRDTFQDSIITNEDCETLQRNLK 125

Query: 192 PRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                 +         +G+R S+  +   +HL      + ++               +  
Sbjct: 126 AEHHDFWYFIVRFLVTTGVRVSELVQIKAEHLACGYLDLYSKGGKIRRIYIPDSLCQEAK 185

Query: 246 AMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
           A            F+  + + +         K  A + G++      H  R   A     
Sbjct: 186 AWCDRRGITSGFLFVGKNGRPVTTRGIHSQLKHYAVRYGIDPDTMYPHSFRHRFAKNFLA 245

Query: 300 AGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
             +    L    G ++++    Y T+ +   +L +   
Sbjct: 246 LSSDISLLADLLGHESIETTRIYLTRSSKEQKLLLDKM 283


>gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
 gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426]
          Length = 304

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 86/303 (28%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           ++EY         + N+ IS+ +  +             +T   IR  ++          
Sbjct: 2   LNEYVAYLQEKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKWIQHMLNPEEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV   Y+  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLLQ 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +            +   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFRNNTVRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|294340046|emb|CAZ88412.1| putative Site-specific recombinase, phage integrase family
           [Thiomonas sp. 3As]
          Length = 348

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/344 (9%), Positives = 92/344 (26%), Gaps = 34/344 (9%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPRKKPTTLKWLI 75
           R        R+     I            A+   +     +    +        T+  ++
Sbjct: 7   RKNGWRAQIRQRGMPSIS-RTFDLKADAEAWAREVEREVQRGNRAVLRDDAGKITIDQVV 65

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI- 134
           + Y K         ++  +       +  + G      + +  + +          +A  
Sbjct: 66  ALYTKHVLPMKKDHSAASN----LRVVHERFGASFLSAVRSVDVAAWRNELVEAGYAAQS 121

Query: 135 --QFLTSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
               L ++  LF +A ++  + +    P  ++ +P +     R     ++   +   +  
Sbjct: 122 VIHRLAALSNLFTYAEQEMSITLPAGNPVRAIRKPIKPKGRDRRLRPGELDALRRGAAAA 181

Query: 190 SQPRL----AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243
               +         + + +R  +        +        +   K G   TV L    + 
Sbjct: 182 RSQVVGLPQIITLAVETSMRLGELLGLEWSRIDLARRTAHLVDTKNGESRTVALSSAALD 241

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---------------VNKSAHG 288
            L   P   +        +      ++                          ++   H 
Sbjct: 242 ALRTLPRRIDGRVFGWQNKDSFEKAWTRCKVRALAAYQTDCTASNSKPDPTFLIDLRFHD 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           +R  + +   + G    E+ +  G K++   + YT   +  +L 
Sbjct: 302 LRHEATSRLFEKGLGVMEVASMTGHKSLAMLKRYTH-IEAEKLA 344


>gi|283853495|ref|ZP_06370737.1| integrase family protein [Desulfovibrio sp. FW1012B]
 gi|283571120|gb|EFC19138.1| integrase family protein [Desulfovibrio sp. FW1012B]
          Length = 371

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/342 (9%), Positives = 74/342 (21%), Gaps = 27/342 (7%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +          R+ +           A            +          TL  L + + 
Sbjct: 12  RWRAVVTVNGNRKEKQYPDGSEKSRRAAERWEEAQRKALKTPEPTVTDSPTLLNLSNSFL 71

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFL 137
                                 I R   D +   I           ++R  +  +A +  
Sbjct: 72  DFVKERQSRQTYVEKLAVMTRTIKRFGRDTEIADIQVADAMKFLSDQNRNRSGYAANKER 131

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAF 196
             +   + W  +      +     +   R  E  +P +   +   +        Q R+  
Sbjct: 132 KVLVTAWGWGKKYMPGFPDGPCPFQVVDRFPEQRQPRYVPPEDDFWAVDGVAEGQDRVML 191

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------------ITVEL 237
              L+   R  +  R     +     ++                           +    
Sbjct: 192 LTFLFLAARRGEIFRLKWSDIDFAGNTVTLWTRKRAGGDLEADPVPMVGRLKQILLAWWE 251

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296
                       + +  F                  +    KAGV     H +R  +A+I
Sbjct: 252 HRPIKSEFVFVNLDETPFCKQYLGLPFTNR--QHLMERLCKKAGVREFGFHAIRHLTASI 309

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNS 336
               G     + A    K+      Y +     + +  ++  
Sbjct: 310 MYREGQPVAVIQAVLRHKSPQTTTKYLQSLGLKQTQEAMEAV 351


>gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFRNNTVRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|310287669|ref|YP_003938927.1| possible phage integrase-like protein [Bifidobacterium bifidum S17]
 gi|309251605|gb|ADO53353.1| possible phage integrase-like protein [Bifidobacterium bifidum S17]
          Length = 416

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 96/389 (24%), Gaps = 63/389 (16%)

Query: 15  RTRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           R ++G   Y     R     R R       T   A                 P  K   L
Sbjct: 16  RDKNGTWHYRRELDRDPATGRPRRIEAKGRTKAEARTRFDAKVAEMERTGLMPGAKSPLL 75

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           K     +        +   +  +            G    + +T +HIR    +      
Sbjct: 76  KDYCERWLADYRTR-VKPTTYRTRAGRIRACCEVIGHVRLKDLTAEHIRLCTRTLGARLA 134

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+      S++++   A  +E + I+PC  V  P+ +   +     E  ++     +  
Sbjct: 135 SSTLKDHFVSLKMVLDQAELEELIPIDPCRRVRPPRVEQRNVDVLGPEQPKRMIEAAASM 194

Query: 190 SQPR--------------LAFEFLLYSGLRCS---------------------------- 207
            Q R              L FE    +G+R                              
Sbjct: 195 PQARRGKRRSDEDLEMWALLFELAFETGMREGERYALMPYELELRDGQPGIHVRQQIQRY 254

Query: 208 -------DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
                          H+   ++    +       V +       L            +  
Sbjct: 255 GKPENVVMPNWLEATHITGTLWLTTPKTRAAERFVPIGTQLWNRLWGWIRANNIGMRDFV 314

Query: 261 K-----QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
                   + ++     +      AG  +   H  R + AT++A A       +A  G  
Sbjct: 315 FTSARGNPVCSSTERYQWCKALKAAGFRRFKIHSARHWMATMAARANMPDDARIAVMGHT 374

Query: 315 TVDQAETYTK--GADRIRLGIKNSRRISS 341
           ++     YT    A   +L       +  
Sbjct: 375 SMQMTMRYTHRDAASLGQLMAAAIPDLGG 403


>gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa]
          Length = 132

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 20  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 79

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 80  TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 111


>gi|282934416|ref|ZP_06339680.1| integrase [Lactobacillus jensenii 208-1]
 gi|281301537|gb|EFA93817.1| integrase [Lactobacillus jensenii 208-1]
          Length = 361

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/362 (10%), Positives = 92/362 (25%), Gaps = 39/362 (10%)

Query: 14  ERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++     I Y  R G    +             AY++ L          +       +L 
Sbjct: 6   KKDNGWTIRYSHRVGKSLSQKYKSGFKTKAEAQAYIAKLEQMKQAGLKFD----VNPSLV 61

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +  +     + +++   ++    ++    G    + IT    +  +      H  
Sbjct: 62  EYYQNWVDTYKKAKVTLSTYQDYQLNGKRLENYFGKTKMKNITRSAYQEFINDFGNNHAK 121

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-------VERPKRKTEGIRPWTKEDMQQFK 183
           ++  +    ++   + A+    +  +   +        +  K +   I         + K
Sbjct: 122 NTVHKLNNCVKSCVQSALYDGIITKDFTHNINISFNADKALKVEYLSIAQIKALINYETK 181

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +         L     LYSG R S+        +     +    KT    T +      +
Sbjct: 182 TRKPLRPNNYLIIAA-LYSGARLSELTGLTWNDIDVYGNTFSISKTWNYRTKQFGPTKNE 240

Query: 244 -----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
                             L +       +   +     + T  +   K       +   +
Sbjct: 241 SSVRKISVPKKLIDLLLELKVNRSDFVFWSATHQGLPNSHTA-NKALKRALDSLNIAKRD 299

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIR--LGIKNSRRIS 340
              H +R          G     +    G    +   + Y    D  R  L  +    ++
Sbjct: 300 FHFHSLRHCHVAFLLSQGIPIDGIAKRLGHANVITTMKIYAYLIDEYRNNLSNQIVDNLN 359

Query: 341 SV 342
           ++
Sbjct: 360 AL 361


>gi|260665454|ref|ZP_05866301.1| integrase [Lactobacillus jensenii SJ-7A-US]
 gi|260560722|gb|EEX26699.1| integrase [Lactobacillus jensenii SJ-7A-US]
          Length = 364

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/362 (10%), Positives = 92/362 (25%), Gaps = 39/362 (10%)

Query: 14  ERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++     I Y  R G    +             AY++ L          +       +L 
Sbjct: 9   KKDNGWTIRYSHRVGKSLSQKYKSGFKTKAEAQAYIAKLEQMKQAGLKFD----VNPSLV 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                +  +     + +++   ++    ++    G    + IT    +  +      H  
Sbjct: 65  EYYQNWVDTYKKAKVTLSTYQDYQLNGKRLENYFGKTKMKNITRSAYQEFINDFGNNHAK 124

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-------VERPKRKTEGIRPWTKEDMQQFK 183
           ++  +    ++   + A+    +  +   +        +  K +   I         + K
Sbjct: 125 NTVHKLNNCVKSCVQSALYDGIITKDFTHNINISFNADKALKVEYLSIAQIKALINYETK 184

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
           +         L     LYSG R S+        +     +    KT    T +      +
Sbjct: 185 TRKPLRPNNYLIIAA-LYSGARLSELTGLTWNDIDVYGNTFSISKTWNYRTKQFGPTKNE 243

Query: 244 -----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283
                             L +       +   +     + T  +   K       +   +
Sbjct: 244 SSVRKISVPKKLIDLLLELKVNRSDFVFWSATHQGLPNSHTA-NKALKRALDSLNIAKRD 302

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIR--LGIKNSRRIS 340
              H +R          G     +    G    +   + Y    D  R  L  +    ++
Sbjct: 303 FHFHSLRHCHVAFLLSQGIPIDGIAKRLGHANVITTMKIYAYLIDEYRNNLSNQIVDNLN 362

Query: 341 SV 342
           ++
Sbjct: 363 AL 364


>gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
 gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC
           43184]
          Length = 409

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 100/326 (30%), Gaps = 27/326 (8%)

Query: 29  HGRRIRLPYPHESTFIPAYMS-ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-- 85
           +G+  RL    +S +   Y   A+  +T  +E      +   T         K       
Sbjct: 67  NGKLERLLLSVQSAYRVLYERGAVFTATDIKELFQGSMQTQITFLERYDRMVKDMEQKVG 126

Query: 86  -SLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIR----SGVESRKHTPSSAI 134
             +   +  S+ +    +    G      D  + ++    +       V    H+     
Sbjct: 127 IEIKATTMSSYHTVRKHLQVFIGEKYHTADIPFGQMEEDFLECLQHYSVGKLGHSQGHYR 186

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEG 189
           +   +++ L + A R+          +E  + + +  R   +  + +     F+ +  E 
Sbjct: 187 KMALAVKKLCRLAYREGLTERQLFAHIEIERGENKQPRALDRASLDKLLGLTFEPYEVEL 246

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL---A 246
              R  F F  Y+G+   D      +HL  +       K             +KLL    
Sbjct: 247 ETARNLFLFSCYTGVAYCDMVALNREHLFTDDEGALWLKF--RRQKTNTLCRVKLLSEAV 304

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGAT 303
                 ++   N     +  + + +  KA   +AG+    SAH  R   AT+   + G  
Sbjct: 305 RMIERYQSEERNTLFAPITYSAYLVQLKALQLRAGISIPLSAHVGRHTFATLITLERGVP 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G   +   E Y     + 
Sbjct: 365 IETVSRMLGHSNIQTTERYAHVTPKK 390


>gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
 gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92]
          Length = 353

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 91/282 (32%), Gaps = 33/282 (11%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
             ++ +   +I      ++   +          + + V       S     ++ +   F 
Sbjct: 73  INTYFNPLKKIYEALCFYELDSLKRIDEELLSEVLASVTGGLSDASKKNYRISVIN-FFS 131

Query: 146 WAVRQEYVAINPCLSVERPKRK--------TEGIRPWTKEDMQQFKSFWSEGS------Q 191
           +  +Q        +     K           +     ++E++++F +            +
Sbjct: 132 FLDKQNEEDGKSHVFDVNLKHWGGISGSKGQKLPEFMSEEEVKKFLNAIDTADFKVNTNR 191

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------ 245
            RL  + ++++G+R S++     + +  +      +  G      +      L+      
Sbjct: 192 NRLIIKIIVFTGIRVSEALNLKRKDISEDGELYVIRIRGKGNKYRIVMIKRALIEDLLDM 251

Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
                   +   FIN    ++     S   +    +AG+ K    AH +R   AT+    
Sbjct: 252 IAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFRAGIRKEKNGAHMLRHTFATLLYKK 311

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                 +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 312 QKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAQDLSE 353


>gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2]
          Length = 289

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 72/274 (26%), Gaps = 22/274 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
              + R     L  L+  +    H  +L         +  + + ++ G+    +  +   
Sbjct: 2   KGETGRPLDDRLSDLVKVWYD-LHGCTLKDG--KQRLARCEALAKRLGNPLAFEFDSLAW 58

Query: 120 RSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTK 176
               + R  +  P +       +  +F   +R         L    + K     +   + 
Sbjct: 59  ARYRQRRLTEVKPETVNHEQRYLSAVFSELIRLGSWHKENPLGKVRQIKTDQVELTFLSL 118

Query: 177 EDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           E + +        +           L +G R  ++       +          K     +
Sbjct: 119 EQVARLLEECKASTNNHTYPVALLCLATGARWEEAESLTRGAVHGGKVHYHRTKNRQSRS 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVR 290
           V +PD   +L+    +        +             F+    + G  ++     H +R
Sbjct: 179 VPIPDELERLIFKVGMPGSGRLFMSC---------RAAFRCAYQRCGF-QTPGQMTHILR 228

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    G  ++     Y  
Sbjct: 229 HTFASHYMMGGGDILTLQRILGHSSITMTMRYAH 262


>gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +                +M L     + ++       +  M+        K    + G+
Sbjct: 58  WMPDAMGIKEPNAAKSLAWMWLFPSDRLSQDPKLGVVRRHHMSENVVQKAVKKAVEQTGI 117

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               S H +R   AT     G     +    G   V     YT   
Sbjct: 118 LKRISCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHVL 163


>gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 336

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/340 (11%), Positives = 91/340 (26%), Gaps = 37/340 (10%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++  +G      R       R+     +            +       + P K    L  
Sbjct: 4   KKVANG-WKVDIRPEGVYGKRIRKTFPTKRQAEQWQIDQKAKANAGEWSPPNKDRRKLSD 62

Query: 74  LISEYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSG-------- 122
           L++ +        L  ++             ++ + GD   +  T +             
Sbjct: 63  LVNTWY------DLHGHTLKDCDNRLRSLTALVNRLGDPIAKNFTGEDFLEYRRFRLTQK 116

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                +   P++       +  +F   ++ + +   NP   + +       +    ++++
Sbjct: 117 HEHRDKLVEPNTVNHEHAYLFAVFSKLIKIKNWKLDNPLKGLSKLTIDEPALVYLEQDEI 176

Query: 180 QQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +   +   E       +  +  L +G R  ++     Q ++         K      V +
Sbjct: 177 RALLASLKESKNPNVLVISKICLSTGARWGEAESLQAQQVKQGKIHFIKTKNSKSRAVPI 236

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFS 293
            D   K +          F                F+    ++G+N       H +R   
Sbjct: 237 SDELSKEIIAGRPRFGRLF---------PGTSKQAFRLAVERSGINLPDGQMTHVLRHTF 287

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           A+          +L    G KT+     Y K A    L  
Sbjct: 288 ASHYMINDGNILKLKDILGHKTLSMTIRYAKLAP-KHLAD 326


>gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319]
 gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 86/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +  NS  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDMLIKE-KESHIGIDIKRNSMSAYHSTRKRLQEFIQKKYHVSDLAFSQLTESFIYELQT 172

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  S+  +    ++ + + A R+          V   +   +  +   KE + 
Sbjct: 173 FCLGELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDKEALD 232

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                +F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKALRFDELEEEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDAGSLWLKF--SRQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     +    +    KA   +AG+    ++H  R
Sbjct: 291 TGVLCRIKLLPEAVRLIEKMHSDERETLLPHIKYPTYQSCLKALRLRAGISFPFTSHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 390


>gi|187933324|ref|YP_001886146.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721477|gb|ACD22698.1| site-specific recombinase, phage integrase family [Clostridium
           botulinum B str. Eklund 17B]
          Length = 358

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 97/342 (28%), Gaps = 28/342 (8%)

Query: 12  TKERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---K 67
            +++ +  + I  ++  G  ++         +   +          K    ++      K
Sbjct: 7   YRQKDKGWQFIISYKINGTWKQKAKQGFKLKSDAKSAADKRVLELKKELKTDNILNTDYK 66

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             T K L   +           N+   +++   + I        + I   HI++G++   
Sbjct: 67  TITFKQLSDAFITHNKLYK-EPNTIEKYKNATAKFIN-LSSMRVKDIKKMHIQAGIDCLV 124

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                 S+ I +LT ++++  +         I P   +  PK+K +     TK+++ +  
Sbjct: 125 SEAKASSTIITYLTQIKLMLNYYKDNYDSNYIVPVEKLSIPKKKIKEKLALTKDELFKLL 184

Query: 184 SF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------- 231
               +      L        GLR  +        ++     +   K              
Sbjct: 185 DKLKNIDDDIYLVSLVAGTCGLRIGEIEGLTWSDIKIKTMELDVNKQWKKLKDGTIGFGN 244

Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
                  +           +         + N    +N    +    +   KAG   + H
Sbjct: 245 LKNNRRRMVPLPTDTLKKLLKYKESHPTDLTNRIIILNKYTLANKLDSTLKKAG-GVTIH 303

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +R   ATI  A        +    G        TY+   + 
Sbjct: 304 ELRHTYATILIASNTMDFKTIAQILGHNVEQTLRTYSHVTNE 345


>gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645]
 gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           L     +       ++ +  ++     + I        R +    +   +          
Sbjct: 34  LYDRIIEVLRVRRYSLRTEAAYLHSIRRYIDFHQHQHPRNLAESDLNRFLTHLAVKEHVA 93

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---------------KRKTEGIRPW 174
            S+  Q L+++  L++  + Q    I   +   RP                      +  
Sbjct: 94  ASTQNQALSAILFLYEHVLEQPLDRIEGVVRARRPKRLPVVLTVDEVSRVMVHLTSDKWL 153

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFL---------------LYSGLRCSDSCRAGVQHLQN 219
               +        E  + R+                      + +  +          + 
Sbjct: 154 IAMLLYGGGLRLLEALRMRVKDLDFERSEITIREGKGDKDRVTTMPRAVVHSLQEHLQRV 213

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----------- 268
            +   +    G            K           F    +++  N+             
Sbjct: 214 KLVHEQDVADGYGRAELPHALARKYPNANQEWCWQFVFPQERRWRNSRTREQGRHHIDES 273

Query: 269 -FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            FS   KA   +AG+ K  ++H  R   AT     G     +    G K V     YT  
Sbjct: 274 LFSRSLKAAVKQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMIYTHV 333

Query: 326 ADR 328
            +R
Sbjct: 334 LNR 336


>gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
 gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum
           WAL-14673]
          Length = 317

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 79/300 (26%), Gaps = 34/300 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L   ++ S  +  +  ++   + +     I    G  +  ++  + +   +  R+ 
Sbjct: 16  TISHLCEAWKLSMRYQ-VKPSTFACYATIIQKHIRPSIGTVEMEEMNNEILSEFILDRQS 74

Query: 129 TPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSV--------ERPKRKTEGIRPWTKE 177
              SA      L  ++ + +   R+      P             +   +    +  +  
Sbjct: 75  RGLSANTMRLILFLLKSIIRAGERRGICPAEPLDFFLPKDRGYEMKLLSQDNRRKLLSWL 134

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--------SCRAGVQHLQNNIFSIK---- 225
              +                     G++  D          R  V  ++N          
Sbjct: 135 AGCRTNFELGLLLSLSTGIRVGELCGVKWEDVDLEEGVLHIRRTVSRIRNTDQKNTAAKT 194

Query: 226 ------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  +   +   + LPD  +  L         + +      M        FK    K
Sbjct: 195 VLYIGSPKTGTSQREIPLPDFMIPRLKEKKREAGCYLLTGRTGCMEPRGVQRRFKNLLRK 254

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNS 336
             +   + H +R   A+   + G  +  L    G  +V      Y      + ++ +   
Sbjct: 255 LRLPDVNIHALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKVYMDQM 314


>gi|317057143|ref|YP_004105610.1| integrase family protein [Ruminococcus albus 7]
 gi|315449412|gb|ADU22976.1| integrase family protein [Ruminococcus albus 7]
          Length = 349

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/346 (9%), Positives = 106/346 (30%), Gaps = 23/346 (6%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
            R  P++ ++      + +      G+R +        + P     L       +     
Sbjct: 16  NRRNPYIVRKT-----VGWDIDTKTGKRKQ--QYITIGYAPTRAKGLEMLMDYNKNPYDI 68

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
                T   +  ++     + +++ ++  ++++ ++       D  ++ +    ++  V+
Sbjct: 69  EASKITFAEVFEKWSAE-KFPTISDSNAKAYKASYNT-CEPLHDRVFKDLKLTDLQGVVD 126

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           +      +  +       ++++A++ E    +    V+  K K +      +    + + 
Sbjct: 127 NCGKNYPTLRKLKVLFSQMYEYAMKYEICMKDYSEYVDIIKFKDKNPNKTDRSPFSKEEI 186

Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
              +  E +        L+YSG+R S+      +++       K  ++ T   + +    
Sbjct: 187 DALWVQESNIYAQIVLMLIYSGVRVSELLDLKRENVNIEEHCFKVVESKTESGIRVVPIH 246

Query: 242 MKLLAMTPIGKETFFINNDKQKM-----NATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296
            +         E                    +  ++       G +   H  R    ++
Sbjct: 247 DRTYPFFKKWYEDGNEYLLHTPDGKQFIYRNYYDSYWTPVMELIGCSHKPHDTRHTCISM 306

Query: 297 SADAGATAHELMATYGWK---TVDQAETYTKGADRIRLGIKNSRRI 339
             +   +   +    G     ++   + YT    +  L  +   RI
Sbjct: 307 MTEKEVSPTLIKKIVGHSGAMSL-TEKVYTHVNVQELL--EAINRI 349


>gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B]
 gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B]
          Length = 369

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/333 (10%), Positives = 80/333 (24%), Gaps = 75/333 (22%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------------------KI 114
           I ++ +  +    + N+  S+     ++                               +
Sbjct: 27  IHDFLRYLYARGSSPNTIRSYAYDLRRVWEFFEARGLEWQGFNISNAVDLIACLHDRIDL 86

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW------------AVRQEYVAINPCLSVE 162
               + +     + +P++  + L +M     W                + +         
Sbjct: 87  RAGRLTTSSGPDRLSPATVNRALAAMSSFCDWAIIAGLLTPPNPMRVSKSINKPSVTDRH 146

Query: 163 RPKRKTEGIRPWTKE----------------DMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
           RP  +    R  +                  D  +         + R     +L+ GLR 
Sbjct: 147 RPFFEGISRRSASVRVIRVRSVHRLPRPMSDDQIKRLLAEVTSLRDRALVLLMLHGGLRP 206

Query: 207 SDSC---------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
            ++                ++      K  +  + +   +     + L            
Sbjct: 207 GEALSLHLEDIAYGRRRVTVRCRADHPKGARGKSRVERVVDLHDGQALDAISGYVMRDRP 266

Query: 258 NNDKQKM---------------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299
                                 +    +  F   A +AG+     + H +R   AT   +
Sbjct: 267 RETDTPFIFLVGGNGTRRSEPLSYAALAKAFARAAERAGIKSPGVTPHALRHTHATRMWE 326

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           AG     L    G  + +    YT+ +D   L 
Sbjct: 327 AGMRELTLQRRLGHASPESTRIYTRVSDATVLA 359


>gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 106

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                  F   +    +++ Q     +  A  AG+ K  S H +R   AT   +      
Sbjct: 1   MLPHGWLFPGRSCTDPISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIR 60

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVDSDDP 348
            +    G   +D    YTK + R    +     R+ ++++   P
Sbjct: 61  VIQVLLGHSKLDTTALYTKVSTRTIHAVAGPLDRLMALMEGKTP 104


>gi|188495908|ref|ZP_03003178.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
 gi|188491107|gb|EDU66210.1| site-specific recombinase, phage integrase family [Escherichia coli
           53638]
          Length = 412

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 110/361 (30%), Gaps = 41/361 (11%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRK-- 66
             + +R G GR     R+RL    + +   A   A         G  P+ E   + +   
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNRAVQDTL 104

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGAMPLEKCELRHWLAC 159

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +   K +P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      +             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRVLDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +     + +            +        K + +  ++      +  +A    + H +
Sbjct: 280 AIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--PWTLHDI 337

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSD 346
           R    T+  D G   H +      +       Y      D  R  +     R+  + ++D
Sbjct: 338 RHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVERLELLQNND 397

Query: 347 D 347
           +
Sbjct: 398 E 398


>gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336]
 gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336]
          Length = 299

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 83/289 (28%), Gaps = 36/289 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            + + L+  +       +    +  S+++   QI++   D +  +I+   +    +    
Sbjct: 1   MSFEQLLHLFFLE---RNHRPATIRSYQNVIAQIVKFYPDKEPEQISKLDLLEWRKYCLN 57

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K +P +   ++  ++ +F +A+  E       L      R  +  +    E    F    
Sbjct: 58  KMSPITWNSYIRHLKAIFNYAIDNELFEYPKNLFKGLMVRPDKPKKKLLTERQIHFLEIS 117

Query: 187 SEGSQPRLAFEFLLY-----------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
            E  +    +    Y           + +R S   +  +  +      I  +        
Sbjct: 118 LENEEKLPHYLQPAYFTKALIYTLKYTAIRQSQLLQLKISDIDMTSKIINIRAETNKNHE 177

Query: 236 ELPDGFMKLLAMT--------------------PIGKETFFINNDKQKMNATQFSIWFKA 275
                    L                        I + +    +  +KM   Q   +F+ 
Sbjct: 178 HHEIPISDKLYPYLKRLILESRARSTSSDEQLFNINRFSLVTTSRNKKMTEGQLVHFFRH 237

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +   G   ++H  R  +AT         + +    G K +    TY  
Sbjct: 238 ISEFIGFTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH 286


>gi|323968119|gb|EGB63529.1| phage integrase [Escherichia coli M863]
 gi|327252439|gb|EGE64098.1| prophage CP4-57 integrase [Escherichia coli STEC_7v]
          Length = 413

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 103/344 (29%), Gaps = 34/344 (9%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTGST-----PKR 58
               G  ++   Y+R    +RI L +                 Y + ++  T      K+
Sbjct: 35  VKPSGSKLWRFSYYRPSDKKRILLSFGSLEDVSLADARKRRSEYRTLISAGTDPQDHEKK 94

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           +     R++  T + + + + +     +LA N+           +    G+     +T +
Sbjct: 95  KREAEARRQGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTAR 154

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                +   K   +  +  + L  +  +  +A     +  NP ++V +           T
Sbjct: 155 RFVEVLTPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPT 214

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----T 226
                     Q  S  +   Q RL  E+ L +  R  ++  A  + +  +          
Sbjct: 215 IRPEQLPELMQALSVSATERQTRLLIEWQLLTVTRPVEASSARWEEIDMDAQQWTIPAGR 274

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----AGV 282
            K      + L    M +L                 K      +      A +    AGV
Sbjct: 275 MKMRRDHVIPLCSQAMAVLEAMKPISHHREHVFPSLKDPRQPMNSQTANAALRRMGFAGV 334

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
             S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 335 LVS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 429

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 24/293 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTK 117
           KP TL  L  E+ +             +  S+E+ ++ +               R +  +
Sbjct: 114 KPFTLLALFREHNEEFRKRVGVDRKEETYESYENSYNILASFVKKRKEKEDVALRSLDRE 173

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI 171
                       R+  P +  + L  ++ + K AV Q  +  +P   L  E P+RK+  +
Sbjct: 174 FYDDFEIFLRTDREMKPKTVHEHLYRLKKMTKRAVSQGTLRRDPYGKLHPELPRRKSRHL 233

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    + + +         + R  F F  ++GL  +D  R   + +  +           
Sbjct: 234 KLEDLKKLMETPVDKPNLQRVRDWFLFATFTGLSYADLKRLSEKDITQSDDGTYWIHI-- 291

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAH 287
                     ++LL +     E +       ++       +      + G     + + H
Sbjct: 292 RRQKTETPSAIRLLNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFH 351

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R    T      G     +    G K++   + Y K  DR     ++ +R+
Sbjct: 352 KARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRK--VDEDMKRL 402


>gi|304386594|ref|ZP_07368882.1| probable integrase/recombinase, possible phage associated protein
           [Neisseria meningitidis ATCC 13091]
 gi|304339423|gb|EFM05495.1| probable integrase/recombinase, possible phage associated protein
           [Neisseria meningitidis ATCC 13091]
          Length = 387

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 95/366 (25%), Gaps = 54/366 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           +TK R   G+ +Y  +    ++    +    TF    ++   G   + E    P      
Sbjct: 7   ITKRRNPSGETVYRVQVRVSKKGYPAFNESRTFSKKALAVEWGKKREAEIEADPELLFKR 66

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
            + K  TL   + +Y         +       +     ++    G     K+        
Sbjct: 67  GKVKMMTLSEAMRKYLNETLGAGRSK------KMGLRFLMEFPIGGIGIDKLKRSDFAEH 120

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP--------------- 157
           V  R+             S+A+Q L  +R + K A     + I                 
Sbjct: 121 VMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNM 180

Query: 158 -CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              S  R +  T            +            L     +Y+  R  + CR     
Sbjct: 181 VAKSAIRDRLPTMEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDD 240

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQK 263
              N  +   +           +    +L M                      I +    
Sbjct: 241 WHKNDCTWLVRDLKNPNGSTGNNKEFDILPMALPVIDELLEESVRKRMLANKGIADSLVP 300

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N    S  +       G+ +   H +R  +AT  A+ G T  ++       + +  + Y
Sbjct: 301 CNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGCTIPQMQRVTLHDSWNSLQRY 360

Query: 323 TKGADR 328
                R
Sbjct: 361 VSVRKR 366


>gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 410

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 86/316 (27%), Gaps = 31/316 (9%)

Query: 42  TFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRI 93
                Y   +       +   ++       K  TL  L  ++          S A  +  
Sbjct: 75  EVNRRYQELMQADGYVTAAKLKDAYLGIGIKQETLLKLFEQHNAEFEKKVGHSRAQGTFT 134

Query: 94  SFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
            + +  + I           D   +++    I          +K   ++   ++  ++ +
Sbjct: 135 RYRTVCNHIREFLPHTYKREDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLL 200
              A     +  NP         ++      T+ ++Q   +   + +     R  F F +
Sbjct: 195 ISIARNDGRLPFNPFAGYIN-SPESVDRGYLTRTEIQTLMNAPMKNATHELVRDLFVFSV 253

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----F 256
           ++GL  SD        LQ          T         +  ++LL +     + +     
Sbjct: 254 FTGLAYSDVKNLTTDRLQTFFDGNLWIIT--RRKKTNTESNIRLLDVPKRIIKKYKGLAR 311

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGW 313
             +     +    +   K    + G       H  R  +AT      G     +    G 
Sbjct: 312 DGHVFPVPSNGSCNKILKEIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGH 371

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K   + 
Sbjct: 372 TNIKTTQIYAKITAQK 387


>gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37]
 gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37]
          Length = 324

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/297 (9%), Positives = 71/297 (23%), Gaps = 49/297 (16%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT- 138
           +S      A  +  ++  +    I  +      +     + + +    ++   A +    
Sbjct: 11  ESMRVKFYAEKTIKAYIYWIKSYIYFNNKKHPFECHNAEVEAFLSYLANSKKVAPKTQAL 70

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++  L           +   L+ +R   + +     T +++       S          +
Sbjct: 71  ALNALVYLYREFLDNPLTLSLNFKRTNTQPKLPIVLTIDEVSLLLKSLSSSVTLPCYLLY 130

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
                L  + + R    +      +I   K G   +V L    ++ L         ++  
Sbjct: 131 GSGLRLMEAVNLRIQDINFDYLSINIWQGKGGKHRSVTLAPELIESLQNQITKVNLYYQQ 190

Query: 259 NDK----------------------------------------------QKMNATQFSIW 272
           + +                                                M+ +     
Sbjct: 191 DMQRTDYQGVYLPHALAGKYPNAAKELKWHYLFPSTQLSFEPGTTNLRRHHMHESNIQKA 250

Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            K  A      K  + H +R   AT     G     +    G   +   + YT    
Sbjct: 251 VKNAARTLDFKKQVTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYTHVLQ 307


>gi|185178831|ref|ZP_02554882.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024209|ref|ZP_02570121.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518498|ref|ZP_02556703.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524047|ref|ZP_02557248.2| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867766|ref|ZP_03079767.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273566|ref|ZP_03206102.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554447|ref|YP_002284620.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550758|ref|ZP_03771707.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551043|ref|ZP_03771989.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|184209466|gb|EDU06509.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018863|gb|EDU56903.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997882|gb|EDU66979.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659777|gb|EDX53157.1| site-specific recombinase, phage integrase family protein
           [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660621|gb|EDX53877.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198250086|gb|EDY74866.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541948|gb|ACI60177.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378858|gb|EEH01223.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379912|gb|EEH02274.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 250

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 73/248 (29%), Gaps = 20/248 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++ +     +L++N+  ++ES                 +   IR+ + +    P +  
Sbjct: 1   MKDFIRYTKKRNLSLNTIRTYESVLKHYEPVLD-------SWIKIRNKIINSNFKPRTIH 53

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +   F++  ++    +     ++ P+ + +     +K ++ +      + S    
Sbjct: 54  LHKNVLLSFFEF--KKLKRYLQNLKLLKLPQIEMKYFDVISKNNLYKKTDILDDDSLEIK 111

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            ++ ++                   N       K      +       + L       + 
Sbjct: 112 KYKTIIRFLFETGIRAHELFFLEPVNNRLYVLGKGNKKRQIFFVKQTFEQLQKFYENLKG 171

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F               ++ K      G N + H +R+  AT     GA    +M   G  
Sbjct: 172 FE--------TTKTLRLYIKKII---GKNFTPHSLRRSFATFMLIKGANPKTVMLQMGHA 220

Query: 315 TVDQAETY 322
            +    +Y
Sbjct: 221 NIQTTFSY 228


>gi|191172050|ref|ZP_03033594.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|300991779|ref|ZP_07179642.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|190907577|gb|EDV67172.1| site-specific recombinase, phage integrase family [Escherichia coli
           F11]
 gi|300305533|gb|EFJ60053.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 200-1]
 gi|324012989|gb|EGB82208.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 412

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 111/361 (30%), Gaps = 41/361 (11%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E  ++ +   
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNHAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGAMPLEKCELRHWLAC 159

Query: 123 VESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +   K +P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQMAKRSPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEVSERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      +             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRALDDKIFPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGV 289
            +     + +            +        K + +  ++      +  +A    + H +
Sbjct: 280 AIFRPIPESILPFVTQLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--PWTLHDI 337

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSD 346
           R    T+  D G   H +      +       Y      D  R  +     R+  + ++D
Sbjct: 338 RHTFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLELLQNND 397

Query: 347 D 347
           +
Sbjct: 398 E 398


>gi|319776181|ref|YP_004138669.1| hypothetical protein HICON_15320 [Haemophilus influenzae F3047]
 gi|317450772|emb|CBY86993.1| Putative uncharacterised protein [Haemophilus influenzae F3047]
          Length = 381

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 30/284 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY ++A    L+ ++   ++   +++           +T   I++ ++ ++  
Sbjct: 88  TIKHYLDEYIETAKVRRLSPSTIAGYQKVINELSD-FHKVAVNSLTPAMIKNWIKQQRTK 146

Query: 130 PSSAIQFLTSMRV---------LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    L+ +R          + +     +        + +   +  E           
Sbjct: 147 TKTIRNKLSVLRSAIDEAVTDGILQINPVSQISVDRYKSTNKTASQDDEYEVDPFTPQEI 206

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------- 231
           +         Q R  F+F L +GLR S+ C      +     +   Q+            
Sbjct: 207 ELILDNCRFEQWRNLFKFALRTGLRSSELCALRWIDIDFKEKTAHVQQAKVVGVIKGTKT 266

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFS-IWFKAKATKAGV 282
                   +     D     L  T      F     K+   +A       +    T+AG+
Sbjct: 267 KSGTRLIELDDVAIDALQDQLNFTRKSDFVFSDPKTKKPWASADAIRKKAWIPTITQAGI 326

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                +  R   AT+    G     L    G K  +     Y K
Sbjct: 327 RYRNPYQTRHTFATMHISQGKNLFWLANQMGHKGPEMLFRHYGK 370


>gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1]
 gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1]
          Length = 334

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/335 (9%), Positives = 84/335 (25%), Gaps = 66/335 (19%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
             +    +    E   +P +    L+  I          +L+ ++  ++  +  + IR  
Sbjct: 2   RRARQQLADVPIELPANPTRFTDQLRTFI-------RARNLSYSTEKTYVHWVLRFIRFH 54

Query: 107 GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
                + +  K +   +         +P++    L ++  L++  ++       P   + 
Sbjct: 55  HKRHPKDMADKEVDEFLSHLAVSLHCSPATQKVALNALIFLYREFLK------LPLSGLG 108

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             + +     P      +            +L  + +  +G+R ++  R  ++ +  ++ 
Sbjct: 109 FSRARKPSRIPTVFSHQEAMDIIGRLSGTHQLVVQLIYGTGMRINEVLRLRIKDVDFSMQ 168

Query: 223 -----------------------------------------------SIKTQKTGTIITV 235
                                                           +           
Sbjct: 169 QIIVRAGKGDKDRVTLLPDRLISPLKQQIDVALAVHRQDLSQGFGDVYMPNALAKKYNAK 228

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                ++   A   +   +      +  +              +A V    + H  R   
Sbjct: 229 APEWQYVFAAAQMSVDPRSENQIRRRHHILDRGVQKAVAHAMQQAKVYKKGNTHTFRHSF 288

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + G     +    G   V   E YT    R
Sbjct: 289 ATRLLEVGYDIRTIQKLLGHADVKTTEIYTHVVKR 323


>gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 398

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 108/360 (30%), Gaps = 44/360 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSAL-----TGSTPKREYINSPRKKPTTLKWLIS 76
           +Y  R    +R  L          +  +AL       +  +                L++
Sbjct: 47  VYVDRAIKLKRQSL----SRANFASAQAALGSFFFMKAGIRIRDFRKQCAAKDQYDPLMA 102

Query: 77  EYRKSAH-WGSLA-VNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +Y      +  L+   +  +      +   ++    D  +  IT   + + +   ++   
Sbjct: 103 QYASYCRDFLHLSEPVTLAAVRETKKFLKAVVPDIHDIAWTSITANDVINYLSKERNDLC 162

Query: 132 SAI--QFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDM----QQ 181
           +A     +T++R  F++    + V     L+    V    + +      TK++       
Sbjct: 163 TASIGVTVTALRRFFRFLQHHDIVIHTSVLNLPLSVPAWSKGSILPITLTKDEQSRLSNY 222

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPD 239
                  G +           GLRCS+     +  ++ N     ++  KT     + +  
Sbjct: 223 SFPSTPTGLRDYSILLCFTELGLRCSEVANLQIGDIEWNRGTVIVRKTKTHAERELPMSV 282

Query: 240 GFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287
              K L    +                    +  +        +   +K G+   +   H
Sbjct: 283 KLGKALEDYVMNARPISLGSPLYFKSARRMLEPASTDNIRSVIRQLYSKVGITGWHVGTH 342

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
            +R+   +   +AG     +    G  +V   + Y       R+ +++ R ++S     +
Sbjct: 343 ALRRTVGSYLYNAGNDLKTVADLLGHTSVSTTKAYV------RIDVESLREVASSWPGRE 396


>gi|228996473|ref|ZP_04156112.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
 gi|228763105|gb|EEM12013.1| DNA integration/recombination/invertion protein [Bacillus mycoides
           Rock3-17]
          Length = 256

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 34/246 (13%)

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +  + +  +R   + A+  E +  N     + PK   E +  W ++++Q F      
Sbjct: 14  KRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKVDKEELTVWNEQEVQLFLKTAQ- 72

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------------I 233
            S+  + F   L +G+R  +      + +  +  ++   +T +                 
Sbjct: 73  DSRYSIVFHMALVTGMRQGELLGLRWKDVDLDKGNLTISQTLSHDGKTFLLGGKTKSSLR 132

Query: 234 TVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279
            + LP   +  L                     +          +N         A   K
Sbjct: 133 KILLPASTIAKLKKHRAVVLKEKLSQGEEYHDNDLVMCTPSGTPINPANVRRSLNALIQK 192

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337
           A V K   H +R   AT+    G     +    G   +    +TY+       +      
Sbjct: 193 AAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--MQEDAVN 250

Query: 338 RISSVV 343
           +I  ++
Sbjct: 251 KIEEIL 256


>gi|312438754|gb|ADQ77825.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 414

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 109/402 (27%), Gaps = 73/402 (18%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K   +HG  K  YY +         RR+   L    + +   A          K      
Sbjct: 13  KFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRRLNERIEAKLNDNTP 72

Query: 64  PRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRS 121
              K  T      E+ ++          +  +  S  + + +    D    KIT  + + 
Sbjct: 73  TTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQ 132

Query: 122 GVESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ER 163
             +            +  L+  + +F++  R   +     L                 +R
Sbjct: 133 VFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKR 192

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHL 217
            K           +D+         G   R      L  EF   +G+R  +      + +
Sbjct: 193 NKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIKNEDI 252

Query: 218 QNNIFSIKTQKTGTI--------------------ITVELPDGFMKLL------------ 245
             +  S+    T                        T+ L     ++L            
Sbjct: 253 DFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSK 312

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
                + +   F N+    M   +F+   +  A   G+ K  S+H +R    ++ +  G 
Sbjct: 313 WNDGYLNRNFVFTNHKGNPMQTERFNKILRESAKDVGIEKEISSHILRHSHISLLSQQGV 372

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +   +M   G          Y+   ++  +      ++  V 
Sbjct: 373 SLKAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 412


>gi|126726553|ref|ZP_01742394.1| probable site-specific integrase/recombinase [Rhodobacterales
           bacterium HTCC2150]
 gi|126704416|gb|EBA03508.1| probable site-specific integrase/recombinase [Rhodobacterales
           bacterium HTCC2150]
          Length = 336

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 100/323 (30%), Gaps = 22/323 (6%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLIS 76
            GK     R+    +              +   +          N  R    T +  L+ 
Sbjct: 8   RGKWQAIIRRSGYPQQS-KSFITKAHAVKWARQIEHDFDLGFVKNDTRLLDQTSMCDLLV 66

Query: 77  EYRKSA---HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
            YR +      G L+ +           + +         I++    S  + R     P+
Sbjct: 67  RYRDTVTIGKKGHLSES-----IRINSFVKQHWAKLKLSTISSGVFSSYRDQRLKIVQPA 121

Query: 132 SAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           +  + L  +R +F+ A+++       NP   V++PK      R     +           
Sbjct: 122 TVRRELGLLRAIFEVAIKEWDFPFQNNPLACVKKPKEPASRDRRLNPGERGVLLKASESH 181

Query: 190 SQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           + P L       L +G+R  +        L     ++  Q T    + ++P   + +  +
Sbjct: 182 TAPWLKLGILLALETGMRRGELLSVSWGDLDIQSSTLLIQNTKNGYSRKIPLSKVAVDTL 241

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAG 301
             + + T    +    ++++ F   ++    K  +N         H +R  + +   + G
Sbjct: 242 LNVHRPTNKCEDKIINLSSSAFQQSWQRCKKKVALNLPEILSLRFHDLRHEAVSRFFEIG 301

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
            +  E+    G +       YT 
Sbjct: 302 LSVPEVALISGHRDPRMLFKYTH 324


>gi|331083927|ref|ZP_08333036.1| hypothetical protein HMPREF0992_01960 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403352|gb|EGG82912.1| hypothetical protein HMPREF0992_01960 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 423

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 95/365 (26%), Gaps = 57/365 (15%)

Query: 15  RTRHGKIIYYFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
              +GK  Y + +    +           P P       +            +    P  
Sbjct: 21  VRANGKYQYKYIEDGKPKFLYSWRLVPTDPQPVGKQPCLSLRELEKMVRQDIDSKLDPLG 80

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVES 125
           +  T+  LI  Y ++     +  N+  ++    + + ++  G     ++ T   +  +  
Sbjct: 81  RKMTVNELIERYLQTR--TGVKPNTLTNYSYVKNLMAKEPFGSRKIAEVKTSDAKLFLIK 138

Query: 126 RKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQ 180
            +       +       +R  F+ AV  + +  NP                   TKE M+
Sbjct: 139 MQQDGRGSSTIKTVRGVLRPAFQMAVDDDILVKNPFGFQLAGVIINTEHTREAITKEQMK 198

Query: 181 QFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           QF  F  + +     +E      ++GLR S+ C   ++ +      I             
Sbjct: 199 QFLKFVHDDNVYHKYYEVFYILFHTGLRISEFCGLTIKDIDMQNHIINIDHQLQRTNHME 258

Query: 238 PD---------------------GFMKLLAMTPIGKETFFINNDK---------QKMNAT 267
                                   F  +LA  P       +                 A 
Sbjct: 259 YHIESTKTNAGTRKLPMTDDVYEMFKTILANRPKDLPEIMVGGYIGFLFRDKKGMPEVAL 318

Query: 268 QFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +   FK    +            S H  R    +  A AG     L    G   +    
Sbjct: 319 HWEQRFKHAVNRYNSIFKVQMPKISPHVCRHTYCSNQAKAGMNPKTLQYLMGHSEIGVTM 378

Query: 321 -TYTK 324
            TYT 
Sbjct: 379 NTYTH 383


>gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
 gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides
           fluxus YIT 12057]
          Length = 429

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 24/293 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTK 117
           KP TL  L  E+ +             +  S+E+ ++ +               R +  +
Sbjct: 114 KPFTLLALFREHNEEFRKRVGVDRKEETYESYENSYNILASFVKKRKEKEDVALRSLDRE 173

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI 171
                       R+  P +  + L  ++ + K AV Q  +  +P   L  E P+RK+  +
Sbjct: 174 FYDDFEIFLRTDREMKPKTVHEHLYRLKKMTKRAVSQGTLRRDPYGKLHPELPRRKSRHL 233

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    + + +         + R  F F  ++GL  +D  R   + +  +           
Sbjct: 234 KLEDLKKLMETPVDKPNLQRVRDWFLFATFTGLSYADLKRLSEKDITQSDDGTYWIHI-- 291

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAH 287
                     ++LL +     E +       ++       +      + G     + + H
Sbjct: 292 RRQKTETPSAIRLLNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFH 351

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R    T      G     +    G K++   + Y K  DR     ++ +R+
Sbjct: 352 KARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRK--VDEDMKRL 402


>gi|326405643|gb|ADZ62714.1| integrase [Lactococcus lactis subsp. lactis CV56]
          Length = 394

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 120/397 (30%), Gaps = 67/397 (16%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R     +S  +       A+       + +
Sbjct: 2   NIKEYTKKDGTKVYRANVYLGVDSLTGKQVRKVITAKSEKMCNTKISRAINEFEKNGQTV 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                     K +   +  S     +   +    ++  +  ++   G++   K+ +  ++
Sbjct: 62  RKVSVDD--FKDIAMLWFDSYKL-GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQ 118

Query: 121 SGVESRKHTPSS---------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             V       S                   +   +  +FK A+    V  NPC++V  PK
Sbjct: 119 QIVNQWMINASQPLNGAYHRPKGKGKDFKIYFNIVERIFKHALSLGLVKDNPCVNVIVPK 178

Query: 166 RK----TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGV 214
            +     + ++  T E ++ F  +     + +   E +       + SGLR  ++     
Sbjct: 179 VRLESTEKKVKHLTAEQLKIFFEYIGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSW 238

Query: 215 QHLQNNI-------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
             +                      +   +   V +    +++L    + +  +F++  K
Sbjct: 239 SDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGK 298

Query: 262 QKM------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
            K             +      +         + +   HG R   A++  +A     E+ 
Sbjct: 299 GKQELVFPNRTGGVLDYQTMRPFLIKWLRACQLPQVGFHGFRHSHASLLLNADVPYKEIQ 358

Query: 309 ATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
              G  ++     TY+      +  IK   R  S+ +
Sbjct: 359 ERLGHASIKMTMDTYSHLESDNK--IKAVERFESIAN 393


>gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 389

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 91/332 (27%), Gaps = 45/332 (13%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK 105
               +  S    ++ + P+  P T       +        L  +   +   ++   I   
Sbjct: 61  RAERIRVSRHPDQFPSPPKADPLTYGRAWEIF-AEKRLPLLKNH--KALRHHYAIHIQPV 117

Query: 106 SGDFDYRKITTKHIRSGVESR-------------------KHTPSSAI----QFLTSMRV 142
             +   + IT+  + S   +                      +PS+        L  +  
Sbjct: 118 FENVLLKDITSFSLESFKVALLAKEAIRKTKTGKVFPRGNTLSPSTVNFILLDVLNVIGR 177

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLY 201
           + +W      +   P   V+      E  R  T  ++++          +        ++
Sbjct: 178 MIEWG-----LHPGPAPKVKLLPSNNERQRFLTPIELERLLDVLEILSCRVYRIALISMH 232

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G+R  +  R   Q +      I            + D  + +L      +    +    
Sbjct: 233 TGMRVGEVLRMRGQDVDFENRLIHVDGKMGKRAAFMDDTVINVLQSIVPVRPADLVFTTA 292

Query: 262 Q--KMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMAT 310
           +  ++     +  F       G+             H +R    +  A      + +   
Sbjct: 293 KGLQIRPNALTHTFTKAVNILGLNDGITDPRFKVVIHTLRHTFCSWLASQNVPLYTIGKL 352

Query: 311 YGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341
            G  ++   + Y K + D     +K   +I+S
Sbjct: 353 VGHTSLRSTQRYAKLSPDAKWDALKLIEKIAS 384


>gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism]
          Length = 319

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 76/300 (25%), Gaps = 48/300 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R       LA+ +   + S+  + I  +G     ++  + +   +          
Sbjct: 20  LLDKVRARIRRRGLAIRTEDVYVSWIRRFILANGKRHPSEMGEREVEWFLTRLAVQGKVA 79

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP------------------------- 164
            S+  Q L+++  L++  + Q+   +      +RP                         
Sbjct: 80  ASTQNQALSALLFLYREVLGQDLPWMENIRRAKRPERLPVVLTIEEVSRLLVQMSGIHHL 139

Query: 165 ------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-----EFLLYSGLRCS 207
                                      ++      +G + R           L   L  +
Sbjct: 140 MASPLYGSGIRLMECVRLRVQDIDFVRREILVRRGKGGKDRRTMLPARAVPALQLHLAQT 199

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
                    + +    +                +  +        +       +  ++  
Sbjct: 200 RMLHERDLGVGHGSVWLPGALARKYPAAAREWIWQYVFPSRLRSVDPRSGVERRHHVDEK 259

Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                 +  A  AG+  + + H +R   AT   ++G+    +    G   V     YT  
Sbjct: 260 NLQRAVRIAAQAAGIAKHATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319


>gi|169832991|ref|YP_001693451.1| integrase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995493|gb|ACA36105.1| integrase [Streptococcus pneumoniae Hungary19A-6]
          Length = 382

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGFTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSTLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NKKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210]
          Length = 235

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 15/221 (6%)

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FW 186
           S+  + L  +     +   +                  E    W                
Sbjct: 12  STVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEATALILAAGAV 71

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFM 242
           +     R      L +G R ++        +       +      K G    V L  G +
Sbjct: 72  ARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSLFRLECEHTKNGKRRLVPLNSGAL 131

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATI 296
             L             ++    +++          F A   +AG+     H +R   A+ 
Sbjct: 132 LALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASW 191

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
               G + + +    G  ++  AE Y   + D  R  ++  
Sbjct: 192 LVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKL 232


>gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1]
 gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1]
          Length = 279

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 17/280 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRS--GVES 125
           L  L +++  + H  S + ++   ++       + +   G      +  +  +       
Sbjct: 3   LSELYTDWLLALH-NSTSPHTYRMYKKRVGDLIKALEVLGAETVEDLQGQTGKELLYHAL 61

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +KH+PS   Q L +      +    + + +        PK K +  +P ++E++++   +
Sbjct: 62  QKHSPSVVEQSLAAWSNFRDFVEAVKGITLPSIPRRNLPKPKEKKPKPISREELRKLLDY 121

Query: 186 WSE-GSQPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             E   +  LA   + Y+GLR S+         Q   N +      K G    V LP G 
Sbjct: 122 LKEKDKEAYLAALLMAYAGLRASEVLSLSKFSFQREGNRLIVRVKGKGGKERVVPLPAGV 181

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            + +         F  ++              +    + G+ +   H +R    T  A  
Sbjct: 182 SREIEENLNLFPLFKWSSSPYYR----LYRKLRQAGKRVGIADFHPHRLRHTFGTELARR 237

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G     +    G   ++    Y   AD      +   R+ 
Sbjct: 238 GVRPEVIRTLMGHSNLNTTAGYIGIADEE--LFEAVERLE 275


>gi|194440057|ref|ZP_03072113.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
 gi|194421021|gb|EDX37052.1| site-specific recombinase, phage integrase family [Escherichia coli
           101-1]
          Length = 339

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 97/335 (28%), Gaps = 39/335 (11%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           LPP V      +G    Y  K  G    +               +       E   +   
Sbjct: 13  LPPRVRS----NG--YSYVWKPEGSTRTIGLGRLRETS------VAKVWQNYELEKAKLH 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T+  L   +  S  +  LA  ++  +  +   ++   G      +  + +R  ++ R
Sbjct: 61  NIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKR 120

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + + A   L S+  ++ W   + YV  NPC  V    + T   R     D Q    +
Sbjct: 121 GLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTLKARTVYITDEQYAAIY 177

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                Q R+A E       R  D      Q + +    I+  KTGT    E        +
Sbjct: 178 AEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAI 237

Query: 246 AMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSAT 295
            +         E         K+ A   + W+      A          + H +      
Sbjct: 238 QLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKADVPFGCNFHDI------ 291

Query: 296 ISADAGATA-----HELMATYGWKTVDQAETYTKG 325
                G +       +     G KT +Q   Y + 
Sbjct: 292 --KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 324


>gi|330965931|gb|EGH66191.1| phage-related integrase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 402

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 109/373 (29%), Gaps = 42/373 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGST--- 55
            +     +    T  G I + +    +GR+  +          T   A            
Sbjct: 18  KVNDRDGLYVAVTAAGSISFRYNYSINGRQETITFGRYGVGGITLAEARERLGEAKKMVS 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                  ++    +  K   T      ++ +      +A ++R    S +++ +    G+
Sbjct: 78  AGKSPAKEKARAKARIKGAETFDAWAEKWLRGYQ---MADSTRDMRRSVYERELKPHFGN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++      P++A+     +  +F+WA+ +     NP   V     
Sbjct: 135 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVENPADLVRPASI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R       +    +            R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALGPDEIALMYQYLDRIGTACSVRAAAKLLLLTMVRKSELTNATWSEINFSE 254

Query: 222 F-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIW 272
                 ++        L     + L                     +    M+    +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSQQALDFFIALKTFAGGSDYVFPSRYDSDLPMSTATINQV 314

Query: 273 F---KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 LTLSYRLAQKEGQPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 374

Query: 326 -ADRIRLGIKNSR 337
             D+ R  +++  
Sbjct: 375 YRDQRRAMLQDWA 387


>gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
 gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750]
          Length = 354

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 98/323 (30%), Gaps = 55/323 (17%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------------------GDFD 110
           L    ++Y  S  + +    ++I++                                  D
Sbjct: 30  LPDFCTQYFDSLEF-NKQPRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFKPSDLEKID 88

Query: 111 YRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              IT      K  +       ++ S+A + L ++R  +++  R E +++NP + V+ PK
Sbjct: 89  GTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPK 148

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSGLRCSDSC 210
              + I      ++ +F      G               ++       +L +G+R S+  
Sbjct: 149 IHEKAIIRMEPNEVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECV 208

Query: 211 RAGVQHLQNNIFSIK-----------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
              +  +  +   I+                    +       K L      +   FI+ 
Sbjct: 209 GLDINDVDFDNDRIRVIRKGGSESFVYFGDEVREALLNYLEERKNLTPDEGHENALFISA 268

Query: 260 DKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            K+++      +  K  A       + + H +R    T         + +    G K V+
Sbjct: 269 KKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVN 328

Query: 318 QAE-TYTKGADRIRLGIKNSRRI 339
                Y +  +  +   +N  ++
Sbjct: 329 TTRKHYAEIVEENKRSARNIVKL 351


>gi|187939834|gb|ACD38974.1| phage integrase [Pseudomonas aeruginosa]
          Length = 367

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 104/360 (28%), Gaps = 43/360 (11%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALT 52
           M P  R      LPP + K+   R G   Y +R    GR   L          A  +  T
Sbjct: 1   MAPRPRKEGSKDLPPNLYKKTDSRSGVTYYAYRDPVSGRMFGLGKDKARAIREAIEANHT 60

Query: 53  GSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
            S          + P + P      ++EY K      LA  S  +      ++  + G  
Sbjct: 61  ESLQPTIADRLSSEPSRPPRLFDDWLTEYEKIYVERGLAAASVRNTRMRLKRLRARFGTM 120

Query: 110 DYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           D R I T  +               A    + +R +F  ++   +   NP    +  + K
Sbjct: 121 DIRDIGTIDVAGYFSEMAKEGKAQMARAMRSLLRDVFMESMAAGWTDKNPVEVTKAARVK 180

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +  R     +  +     ++    + A E  + +G R  D      +  Q+    +   
Sbjct: 181 IKRERL--TLETWRLIYAEAKQPWLKRAMELAVITGQRREDLAAMQFKDEQDGYLQVVQS 238

Query: 228 KTGTIIT--------------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           KTG  +                              ++                    + 
Sbjct: 239 KTGMRLRISTSIGLAVLGLDLSSVIKSCRGRVLSRYMIHHHRTISRAKAGQPIMLDTISA 298

Query: 268 QFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            F+      A K G++      S H +R  +A +  + G    +     G ++    + Y
Sbjct: 299 AFADARDRAAKKHGLDFGASPPSFHEMRSLAARLHEEEG---RDAQRLLGHRSAKMTDLY 355


>gi|123967974|ref|YP_001008832.1| hypothetical protein A9601_04371 [Prochlorococcus marinus str.
           AS9601]
 gi|123198084|gb|ABM69725.1| Hypothetical protein A9601_04371 [Prochlorococcus marinus str.
           AS9601]
          Length = 321

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 93/325 (28%), Gaps = 31/325 (9%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G       R+ +    R           ++  A+   T K          P TL   I
Sbjct: 6   RSGSGWQVLIRRKNYVGPRSRNFLSRDLAESWADAVEERTKKVL-----NDTPVTLGEAI 60

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           ++Y         +     + +           GD     +  KH     + R  K  P++
Sbjct: 61  NDYINGPLLLHRSA---ENEKYPLRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNT 117

Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSE 188
            ++ L  +RVL  WA  +    +  NP   +             T ED ++         
Sbjct: 118 VMRELRILRVLIDWARDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMS 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDG 240
                   +  L +G R S+      +++                   +  +  V  P+ 
Sbjct: 178 NQNHLRLTKLALTTGFRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEK 237

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
             K+L                   +       F     KAG+     H +R  + +    
Sbjct: 238 AQKILEELQGRDGKVIEL------SKGAARNGFDKARKKAGLETLRFHDLRHIAISRMWR 291

Query: 300 AGATAHELMATYGWKTVDQAETYTK 324
           +G +A E+ A  G + +     Y+ 
Sbjct: 292 SGMSALEISACSGHRDIKMLMRYSH 316


>gi|291530908|emb|CBK96493.1| Phage integrase family [Eubacterium siraeum 70/3]
 gi|291557583|emb|CBL34700.1| Phage integrase family [Eubacterium siraeum V10Sc8a]
          Length = 307

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 71/288 (24%), Gaps = 25/288 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VES 125
             T +  + +Y +S     L+ ++   +            +    +I    ++      +
Sbjct: 22  TLTFETALEQYIRSKE-NILSPSTIRGYRILQRNAYDYINNLTLSEINELVLQKWANHNA 80

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            K+   +       +  +FK    +   +       E                       
Sbjct: 81  IKYASKTINNQFGLITAVFKQNRIEIDTSSIRLKPKEPVNYIVPTPDE------MHTIIS 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------TQKTGTII 233
              G    +   F L  GLR S+       + +N    +K             + T    
Sbjct: 135 SVYGEDIEIPVLFALLLGLRQSEIQALKWSNYRNCRIYVKGAIVPNENNKLIEKSTNKSF 194

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
           T          L       E          +        F     K G+ + + H +R  
Sbjct: 195 TSTRELAVPDYLIKRLDSIEHKGDYIVNN-LTPNMILDRFFKLQEKYGMRRFTMHSLRHA 253

Query: 293 SATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI-RLGIKNSRR 338
           +A++    G +    M   G  T    +  Y    +   R       +
Sbjct: 254 NASLMLQLGISDKYAMERLGHSTPYMLKTIYQHTFNEEHRRVADKVNK 301


>gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 423

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 77/305 (25%), Gaps = 33/305 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSR------ISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123
            L  E+ K          +        +        I    K  D    ++         
Sbjct: 111 ELCDEFCKEYKNRIDVDRTIHSLFRYQTLRRDLSLFICQDYKVKDIPLVELDQSFAEKFA 170

Query: 124 ESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              KH    A   ++     ++ + K A     +  NP             I   T+E++
Sbjct: 171 AYLKHVRGLADTTISVEIKSLKHIVKKAFNDGQMEKNPFA-YYYYFADQPEIEYLTEEEI 229

Query: 180 QQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
            +            + R  F F  ++GL  +D  +   + L+          +    T  
Sbjct: 230 NKLIIGKVKQQRQDRTRDMFLFCCFTGLSYADLAKLSYEELKQTPNGAWWISSIRQKTKV 289

Query: 237 LPDGF-----MKLLAMTPIGKETFFINNDKQKM------NATQFSIWFKAKATKAGVNKS 285
                       +L    I    F     +         +     +  K  A +  + K+
Sbjct: 290 PFTVKLLPVAKAILEKYRIPANRFNRLFPENPGKVFPVASLKSSDVCLKHIARQCEITKN 349

Query: 286 --AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              H  R   AT      G     +    G K     + Y K  ++  +      RI   
Sbjct: 350 LKFHMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ--MIDNAISRIEDQ 407

Query: 343 VDSDD 347
           +    
Sbjct: 408 IGERF 412


>gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El
           tor]
          Length = 361

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +   +   K        +  ++ T  +   ++   ++GV  + +AH  R   AT 
Sbjct: 259 FKWQFIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQ 318

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AG     +    G   +   + YT    +
Sbjct: 319 LLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQ 350


>gi|158340051|ref|YP_001521220.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
 gi|158310292|gb|ABW31907.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris
           marina MBIC11017]
          Length = 654

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 37/306 (12%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A   +TP     +  +   T L  L    + E+ +S        N+  ++E    Q++  
Sbjct: 12  ADQAATPIDAARSRTQPATTPLADLRWMRVEEFLRSREIR---PNTHKAYERDLKQLMD- 67

Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAIN 156
                + +IT++ +       K  P         ++  + L +++  FKW   ++Y+  N
Sbjct: 68  WTPKGWHEITSRDLDRYKTYLKTEPNHRGKLRKCATINRSLAALQSFFKWLTVRDYITKN 127

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212
           P L +E+ K      + ++++++        +      + R A   L+  GLR S+    
Sbjct: 128 PALLLEKLKSDPLLPQEFSQDEVDNLYQAICDRGFHSFRDR-ALLHLIDHGLRASEIQGL 186

Query: 213 GVQHLQNNIFSIKTQK----------TGTIITVELPDGFMK----LLAMTPIGKETFFIN 258
            V         I+  K          +      +    + +    +L        +   N
Sbjct: 187 NVGDYDGQRVHIREAKADSVGSVPLLSKARRAFDQYKQWREQQGEVLEDESPLFVSHSNN 246

Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +  Q++        FKA A  A V     H  R   AT        +         K+  
Sbjct: 247 SKGQRLQYWGIYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSILARKVTRHKSEQ 306

Query: 318 QAETYT 323
               Y+
Sbjct: 307 SFVRYS 312


>gi|22536723|ref|NP_687574.1| prophage LambdaSa1, site-specific recombinase phage integrase
           family protein [Streptococcus agalactiae 2603V/R]
 gi|22533566|gb|AAM99446.1|AE014217_1 prophage LambdaSa1, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 2603V/R]
          Length = 359

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 95/332 (28%), Gaps = 26/332 (7%)

Query: 18  HGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKW 73
           +GK  Y  R       +  ++    +     A   A L       + +        T   
Sbjct: 8   NGKFKYIERYTDPLTNKYKKVSVTLDKNSSQAQKKAGLILQEKIEDRLAIRNHSEMTYGE 67

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESR--KHTP 130
           L  EY K      +  +++  +      I     D     K+T + IR  ++     ++ 
Sbjct: 68  LKKEYLKQWIPT-VKDSTKRGYLVSDSHIATVLPDDTIINKLTKRDIRLIIDKLLKHNSY 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQFKSFW 186
               +    +  +F +A++ +Y+  NP  +V  P      K E +   T  ++    +  
Sbjct: 127 HVTHKCRKRLHAIFSYAIQMDYMTSNPTENVLVPKPKDDYKPEKVLYLTSNEVYDLCNRM 186

Query: 187 SEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQN----------NIFSIKTQKTGTIIT 234
            +  +  LA    F+  +G+R  +        +              F+ +   T     
Sbjct: 187 IDNDEQTLADIVLFMFLTGVRYGELSCLTYDKIDFENKEILINATYDFNTREITTTKTKK 246

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
                     +      ++                + +   +    G +   H  R    
Sbjct: 247 STRKISVSDNILDIVNRQKKTSSFVFPNSNGVPILNAYINKRLKIYG-DYHTHLFRHSHI 305

Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKG 325
           +  A+ G   + +M   G          Y+  
Sbjct: 306 SFLAEKGIPLNAIMDRVGHSDPKTTLSIYSHT 337


>gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 74/270 (27%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142
             +R +++            +G  ++R +T  H+ +     +      ++  + L ++  
Sbjct: 39  PRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALAS 98

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195
           LF   +    V        +   R +              +           +G + R  
Sbjct: 99  LFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAV 158

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI--------------FSIKTQKTGTIITVELPDGF 241
              LLY GLR  +  +     LQ                   +              +  
Sbjct: 159 LAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKD 218

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
           ++  A       +         ++A          A  AG+       HG+R  +AT + 
Sbjct: 219 LERGAGNGSLFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNAL 278

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308


>gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1]
 gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1]
          Length = 292

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 10/163 (6%)

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP 238
                 +   + +L    L  +GLR ++  R        +   I+ Q  K      V L 
Sbjct: 1   MRMMEAARTLRDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLA 60

Query: 239 DGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
           D  + L+                      + ++        K     +G+ K  + H  R
Sbjct: 61  DDLLPLMRQLWRHTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFR 120

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
              AT   ++G     +    G   ++    YTK A      +
Sbjct: 121 HSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV 163


>gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
 gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus
           Rock3-28]
          Length = 384

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 46/326 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS- 106
              +       +   S   K  +++ +   +  S    +L   S   F   F+ I     
Sbjct: 31  EKEIVKKRQPHKRKTSKISKEDSVERVFERFVDSKVKQNLRPKSLNQFLLMFNSIKAFHE 90

Query: 107 ----GDFDYRKITTKHIRSGVESRKHTP--------------------SSAIQFLTSMRV 142
                 F    ITT  I   V   K+                       +    +  ++ 
Sbjct: 91  TQNAHTFYMTDITTNFISDWVYWLKNEYVRFDGHAYVPESAQTVGLADETISSRIKRLKT 150

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLA 195
              W +RQE ++ NP    E  ++    I   + +         + + +   +  +  + 
Sbjct: 151 FINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELNNLLKMAKSYSNKSFKHFRDYVL 210

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIG 251
              L+    R +++      ++ +   ++  Q          TV L +   +LL      
Sbjct: 211 LHLLIDGMFRITEALLLSPSNIDHTNRAVIIQSNNAKSRKSRTVPLSNKTYRLLIQLLEE 270

Query: 252 KETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
            E F  + D         + ++        +  A +A + K    H +R  +AT    + 
Sbjct: 271 NEAFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEAKIKKRFYLHLIRHSAATHYLSSS 330

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                L    G   +     Y+  AD
Sbjct: 331 GDVESLRKILGHADLRTVLIYSHLAD 356


>gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 391

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 106/356 (29%), Gaps = 40/356 (11%)

Query: 10  FVTKERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            +T+ RT  G  +    +RK  G +              + +              P   
Sbjct: 3   NITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGG 62

Query: 68  PTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              +  L  ++       W + + ++  S          K  +     IT   +++ V S
Sbjct: 63  KQRIGTLHDQWTAEKKPFWKATSGSNMDSAWKC--HCEAKWAERQIGSITHAEVQAWVGS 120

Query: 126 RKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179
                   S  +    M+ +   AVR + ++ NPC  +E P+      R           
Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180

Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------IF 222
              +  +    G + R     L + GLR  ++     + L  +                +
Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
           +  T K      V +P   M  L      +E         +       +  + + W+   
Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300

Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327
            T+ G  +      H +R  +A+++  AGA    L    G K      + Y    D
Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 356


>gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64]
 gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64]
          Length = 253

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 71/249 (28%), Gaps = 17/249 (6%)

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW 146
            N+  +++S          +  Y +I  K++          + P+S    + ++    ++
Sbjct: 3   KNTINAYKSAIKLF-----NLKYEEINKKNLLLFKTYLIENYKPNSVNLKIQALNRYLEF 57

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
             +         +  +              + +   +    E         FL  +G R 
Sbjct: 58  IKKDTLKLKFIKVQQKTFIDNVIS----DADYVFLKRKLKKESLDWYFVVRFLAATGARV 113

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQK 263
           S+  +  V+H++     I ++               + +             F+N   + 
Sbjct: 114 SELIKIKVEHVKLGYIDIYSKGGKARRIYIPLKLKKEAIIWLENKCLNSGYIFLNRFGKA 173

Query: 264 MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           +     S   K  A K G+N      H  R   A    +       L    G ++++   
Sbjct: 174 ITTRGISQQLKKYALKFGINPKVVYPHSFRHRFAKNFLEKYNDISFLADLMGHESIETTR 233

Query: 321 TYTKGADRI 329
            Y +     
Sbjct: 234 IYLRKTSNE 242


>gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
 gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13]
 gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13]
 gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1106b]
          Length = 247

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 65/244 (26%), Gaps = 18/244 (7%)

Query: 111 YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            R++    ++  V +R       S+  + L  +     +   +                 
Sbjct: 1   MRELKRGDVQRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDG 60

Query: 168 TEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            E    W                +     R      L +G R ++        +      
Sbjct: 61  GESRVRWISRSEATALILAAGAVARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSL 120

Query: 224 IK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFK 274
            +      K G    V L  G +  L             ++    +++          F 
Sbjct: 121 FRLECEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFV 180

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
           A   +AG+     H +R   A+     G + + +    G  ++  AE Y   + D  R  
Sbjct: 181 AACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREA 240

Query: 333 IKNS 336
           ++  
Sbjct: 241 VQKL 244


>gi|58337198|ref|YP_193783.1| integrase [Lactobacillus acidophilus NCFM]
 gi|227903780|ref|ZP_04021585.1| integrase [Lactobacillus acidophilus ATCC 4796]
 gi|58254515|gb|AAV42752.1| integrase [Lactobacillus acidophilus NCFM]
 gi|227868667|gb|EEJ76088.1| integrase [Lactobacillus acidophilus ATCC 4796]
          Length = 316

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/312 (9%), Positives = 80/312 (25%), Gaps = 36/312 (11%)

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
               +                  +  +      +  + + +E+ + ++    G     K+
Sbjct: 1   MEVAKDQQQISDANPVFADYFKSWYGTYKIPGKSRTTVVRYETIYKKLNAYYGKAKLAKV 60

Query: 115 TTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T K  +  +       +  +  +   S+R   +  V    +  +    +          +
Sbjct: 61  TRKSYQIFMNEYGKKHAKDTVYKTNGSIRSCVRDGVADGIIQKDFTQKINLTWNSERTRK 120

Query: 173 PWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                  +                  R      LY+G+R  +        +     +I  
Sbjct: 121 IDYLNYEEIQSLKNSLLHNIKHTYISRYMILTALYTGMRPGEIAVLTWSDIDFKNQTINI 180

Query: 227 QKTGTI-----------------------ITVELPDGFMKLLAM-TPIGKETFFINNDKQ 262
            K+                            +++   F+ +L+       E  FI  D  
Sbjct: 181 NKSYNHDKGRVDNYDSSEIDKSTKNTNSVRIIKVDKKFLDILSQLKQNDHEKIFIGKDGT 240

Query: 263 KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +   +  ++ +  K  ++K     H VR     +    G   + +    G   +   
Sbjct: 241 IPTSNAVNKVWRKQLEKLNIDKPSFHFHSVRHTHVALLPFKGVPLYAISKRLGHANMSTT 300

Query: 320 -ETYTKGADRIR 330
            + Y    D ++
Sbjct: 301 AKKYAYMLDELK 312


>gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
 gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929]
          Length = 383

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/381 (10%), Positives = 105/381 (27%), Gaps = 55/381 (14%)

Query: 14  ERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
              ++G   Y F+         G  +RI                A           +  +
Sbjct: 7   YTLKNGNKCYLFQVYAGLDPQTGKPKRIMKRGFKTK---KEATLAANQLELSISRGDFHQ 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           +     + +  ++ +             +   + + I+ + G+   R IT   ++  V  
Sbjct: 64  ESNILFRQVYEQWYQGYINTVRVSTYCRTAGMFENHILPELGNKRIRTITIAQVQRAVNK 123

Query: 126 RKHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                +    ++      +F +A++  Y+  +    +    ++ E      +    + + 
Sbjct: 124 WFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNPAKMITIPKRKETWGEKPENFWDKQQL 183

Query: 185 FWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----------------N 220
                     E  +    F  L ++G+R  +        +                    
Sbjct: 184 AQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLALTWNDVNFSKSTLSINKTLTQGMRGK 243

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---------------NDKQKMN 265
                 +       + L    +  L      +   ++                ++    +
Sbjct: 244 QIIQPPKTKKGQRVIALDKITLNYLKQWRARQRREYLMLGFNTIQRGQLIFANSNNGFKS 303

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
               + W         + K + HG R  SA++   AGAT  E+    G +        YT
Sbjct: 304 LNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLFAAGATIKEVQTRLGHEDAQTTLNIYT 363

Query: 324 KGADRIRLGIKNSRRISSVVD 344
                 +   + + ++++ +D
Sbjct: 364 HVT--KKQDNQAAEKLANYLD 382


>gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
 gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190]
          Length = 310

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 83/305 (27%), Gaps = 26/305 (8%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
                  + P T+   +  +          + ++  ++ S    ++ +    D   +   
Sbjct: 3   AQRADRTELPPTVAGHLDAFTAHLDRERGRSSHTVRAYRSDLAGLLGRLPGDDLAVLDLG 62

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWA---VRQEYVAINPCLSVERPKRKTEGIRPW 174
            +RS +       +S             +     R   +  +P   ++ P+ +       
Sbjct: 63  LLRSWLAEAHAAGTSRSTLARRAAAARTFTAWAHRTGLLDSDPGARLDSPRPQRRLPSVL 122

Query: 175 TKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
             +         + G         + +L  E L  +G+R ++ C   V  +  +  +++ 
Sbjct: 123 RADQAADLMDAAASGAAERDPVALRDQLLLELLYATGVRVAEVCGIDVDDVDQSARTVRV 182

Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---- 281
             K     TV       + L                                        
Sbjct: 183 LGKGNRERTVVYGVPAERALRTWLAAGRPALARTGGPPALLLGVRGRRLDPRVARSVVHA 242

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332
                    +   HG+R  +AT   D GA    +    G  T+   + YT    DR+++ 
Sbjct: 243 AVAAVPGAPDIGPHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVTVDRLKVV 302

Query: 333 IKNSR 337
              + 
Sbjct: 303 HDQAH 307


>gi|240119337|dbj|BAH79202.1| putative integrase [Escherichia coli O157:H7]
          Length = 405

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 102/347 (29%), Gaps = 32/347 (9%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---- 66
            GK+ +Y  +R G GR     RI+L    + +   A   A            +PR     
Sbjct: 36  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKAAREKA-AQCRAWLAEGKNPRHEMNY 94

Query: 67  ------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 KP T+   ++ + +S    +  V+         + +I+  G     K   +H  
Sbjct: 95  TVQEALKPVTVGDALTYWLESYVKEN-RVDYIALKRRLNNHVIQHIGAMPLDKCELRHWL 153

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRP 173
           +  +   K TP +A   L + +   K+  R+ Y   N           ++P      +  
Sbjct: 154 ACFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLST 213

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
               ++ Q                 L+  G R  +   + +             K  +  
Sbjct: 214 KELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKT 273

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVN-KSAHGV 289
            V +     + +    +       +      +       S + +    +      S H +
Sbjct: 274 KVAIFRPIPEAILPFVMKLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLKHPQWSLHDI 333

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           R+   T+  D GA  H +    G +       Y      D  R  + 
Sbjct: 334 RRTFTTMLNDLGADPHVVEQLTGHQMPGMQRVYNHSRYLDAKRDALD 380


>gi|323969634|gb|EGB64921.1| phage integrase [Escherichia coli TA007]
          Length = 412

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 106/359 (29%), Gaps = 37/359 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     R+RL    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRQVSPERLRLGNYPDLSLKAAREKA-AQCRAWLAEGKNPRHELNHTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             P T+K  ++ + +S        + S  S       II + G     K   +H  +  +
Sbjct: 104 LAPVTVKDALTYWLESYAKEKRTDHESLKS--RINKHIISQIGAMPLDKCELRHWLACFD 161

Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQ 180
                 P SA   L   +   K+  ++ Y   N    +       +     R  T +++ 
Sbjct: 162 QLAKRNPVSAGFLLQVCKQALKYCRKRRYAVSNVLDDMVVGDVGKKAEISERVLTNKELG 221

Query: 181 QFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           +      E             L+  G R ++  R+ V+            K  +   V +
Sbjct: 222 ELLRALDEKIFPPYYSALIRLLIVFGCRTTELRRSEVREWDFKEMLWTVPKEHSKTKVAI 281

Query: 238 PDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
                + +    +       +        K + +  ++      +  +A    S H +R 
Sbjct: 282 FRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVAEYGRTAHRRINQA--PWSLHDIRH 339

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
              T+  D G   H +      +       Y      D  R  +     R+  + ++D+
Sbjct: 340 TFTTMLNDLGVDPHIVEQLTAHQMPGMQRVYNHSRYLDAKRDALNLWVDRLELLQNNDE 398


>gi|299783067|gb|ADJ41065.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 361

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 84/301 (27%), Gaps = 30/301 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
                 ++       ++   + +++   ++ + +   +     I  +  R  +       
Sbjct: 62  FPDYFKDWFNLYKRSNVTERTALTYHQVYNALKQYL-NVPVEDIDRRRYRQFMVDFGSNR 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----------------- 171
             S+  +F + +    K A+    V  +   S      K++                   
Sbjct: 121 AKSTVSKFNSLIHACVKDAMYDGVVHKDFVASTNLVFDKSKTREVDYLSIDEIQKLVSHL 180

Query: 172 -RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +        ++    +  +  RL     L  G   +++        +       T+   
Sbjct: 181 VKTRNVHFTSKYMILTAIYTGARLGEIQALTWGDIKNNTISINKSWNETTQDFQPTKNES 240

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AH 287
           +I T+ + D  + LL      K+  F++       +   +   +       +N+     H
Sbjct: 241 SIRTINVDDQLIALLKELNFNKKQIFVSQYHTVPTSAAVNKTLRESLKACHINRRGFHFH 300

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIK-----NSRRISS 341
            +R          G   + +    G   +      Y+   D  +            ++SS
Sbjct: 301 SLRHSHVAFLLANGIDLYAISKRLGHSDITTTSRVYSYMIDEYKNLTNNQIIKALGKLSS 360

Query: 342 V 342
           V
Sbjct: 361 V 361


>gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14]
 gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14]
          Length = 404

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 20/252 (7%)

Query: 96  ESYFDQIIR---KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV 148
             +  + I+   K  D  + ++T   I    +          S+     T ++ + + A 
Sbjct: 136 RIHLQKFIQRKYKVSDLAFSQLTENFIHEFRQYFLGECGFQESTFYNVATHLKTVCRLAY 195

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSG 203
           R+           +  K   +  +   +  + + K    +         R  F F  Y+G
Sbjct: 196 REGLADTLLFDKAKISKGDKKLPKALDRAALDKLKELCFDDLEEDLETARDIFLFACYTG 255

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-- 261
               D       H   +       K             +KLL         +  +  +  
Sbjct: 256 AAYCDLMELNRSHFVRDDEGSLWLKFN--RQKTGVLCRIKLLPEAVRLIAKYRSDERETL 313

Query: 262 -QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVD 317
              +    +    K+   +AG+    + H  R   AT+   + G     +    G   + 
Sbjct: 314 LPYIKYKSYQTCLKSLRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNIS 373

Query: 318 QAETYTKGADRI 329
             E Y K   + 
Sbjct: 374 MTERYAKVTPQK 385


>gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 406

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRTALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVRDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G+ K+   H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14]
 gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136]
 gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14]
          Length = 429

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 24/293 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTK 117
           KP TL  L  E+ +             +  S+E+ ++ +               R +  +
Sbjct: 114 KPFTLLALFREHNEEFRKRVGVDRKEETYESYENSYNILASFVKKRKEKEDVALRSLDRE 173

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI 171
                       R+  P +  + L  ++ + K AV Q  +  +P   L  E P+RK+  +
Sbjct: 174 FYDDFEIFLRTDREMKPKTVHEHLYRLKKMTKRAVSQGTLRRDPYGKLHPELPRRKSRHL 233

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    + + +         + R  F F  ++GL  +D  R   + +  +           
Sbjct: 234 KLEDLKKLMETPVGKPNLQRVRDWFLFATFTGLSYADLKRLSEKDITQSDDGTYWIHI-- 291

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAH 287
                     ++LL +     E +       ++       +      + G     + + H
Sbjct: 292 RRQKTETPSAIRLLNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFH 351

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R    T      G     +    G K++   + Y K  DR     ++ +R+
Sbjct: 352 KARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRK--VDEDMKRL 402


>gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
 gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721]
          Length = 280

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 73/266 (27%), Gaps = 12/266 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS 131
           ++E+ +      L + +   +E      ++      D +  ++    I+  ++  K T  
Sbjct: 6   LNEFIRYEFDRGLTLETTKRYEREIKYFLKFIKIKTDKELSELLEDEIKMCLKKYKMTLE 65

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 +++        +                +K   I     E          +  +
Sbjct: 66  KEKYKPSTINGKIIIINKFLRFCEIEVKEKCVKIQKKPYITNVLSESEYLRLLNVCDNFR 125

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            ++    L  +GLR S+     ++ + N    IK +              +KL+      
Sbjct: 126 DKVIIRVLANTGLRVSELLSLEIREIYNGDIQIKGKGA-KYRECFCSSEIIKLIKQYIET 184

Query: 252 KETFFINNDKQKMN-----ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGAT 303
           +      +               +      A KA + K     H +R       A+   +
Sbjct: 185 ERLETDKSKVFTGRKGALKRQAINKMLFKYAKKAHIKKEKAHPHSLRHLFGKNLAERRVS 244

Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329
              +    G + +     YTK     
Sbjct: 245 LDVIKTFMGHEDIRTTAIYTKRTREE 270


>gi|125622936|ref|YP_001031419.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491744|emb|CAL96663.1| phage integrase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069675|gb|ADJ59075.1| phage integrase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 394

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 120/397 (30%), Gaps = 67/397 (16%)

Query: 10  FVTKERTRHGKIIYY------FRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYI 61
            + +   + G  +Y            G+++R     +S  +       A+       + +
Sbjct: 2   NIKEYTKKDGTKVYRANVYLGVDSLTGKQVRKVITAKSEKMCNTKISRAINEFEKNGQTV 61

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
                     K +   +  S     +   +    ++  +  ++   G++   K+ +  ++
Sbjct: 62  RKVSVDD--FKDIAMLWFDSYKL-GVKPRTVQIMQTRLNNYVLPALGEYRIDKVNSIILQ 118

Query: 121 SGVESRKHTPSS---------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
             V       S                   +   +  +FK A+    V  NPC++V  PK
Sbjct: 119 QIVNQWMINASQPLNGAYHRPKGKGKDFKIYFNIVERIFKHALSLGLVKDNPCVNVIVPK 178

Query: 166 RK----TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSDSCRAGV 214
            +     + ++  T E ++ F  +     + +   E +       + SGLR  ++     
Sbjct: 179 VRLESTEKKVKYLTAEQLKIFFEYIGALPKEKYTNELMTGLCRLLVASGLRIGEAVALSW 238

Query: 215 QHLQNNI-------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
             +                      +   +   V +    +++L    + +  +F++  K
Sbjct: 239 SDIDFKTGSVSVSKTTLRAVIQSTPKTDKSNRIVLIDSKAVEVLKHWELFQAKYFMSIGK 298

Query: 262 QKM------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
            K             +      +         + +   HG R   A++  +A     E+ 
Sbjct: 299 GKQELVFPNRTGGVLDYQTMRPFLIKWLRACQLPQVGFHGFRHSHASLLLNADVPYKEIQ 358

Query: 309 ATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
              G  ++     TY+      +  IK   R  S+ +
Sbjct: 359 ERLGHASIKMTMDTYSHLESDNK--IKAVERFESIAN 393


>gi|288561495|ref|YP_003428901.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
 gi|288548127|gb|ADC52009.1| transposition regulatory protein TnpA [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 74/316 (23%), Gaps = 73/316 (23%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH------ 128
           +Y K       + N++ ++     +      D +   + +  + +   +   ++      
Sbjct: 19  KYIKYLDTRGKSPNTQKTYCYALKEYFTFLEDVNLGYKDVRLEDLVDFIAWLRNPYGINK 78

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                        ++    LT++   + +  R E +       V + +      R +   
Sbjct: 79  AVPLQPTEARKKENTINLILTAVNGFYDYLYRNEELDKAMVDLVTKEQLFKGAKRAYRDF 138

Query: 178 DMQ-----------------------------QFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                                           +     +   + +L  + L  +GLR  +
Sbjct: 139 LYHVNQNSPSHKNVLRVKKRKVKLKVLSKMEVEMLYNGATNIRDKLLIQTLYETGLRIGE 198

Query: 209 SCRAGVQHLQNNIFSIKTQK-------------TGTIITVELPDGFMKLLAMTPIGKETF 255
                ++    +       K               +   + +    M LL          
Sbjct: 199 LLSLFIEDFIFDHKGGHRIKLVDRGELENGAKLKTSEREIYVSQSLMDLLDDYLYEVIDD 258

Query: 256 FINNDK------------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
              +                MN    S  FK    K       H +R   AT+       
Sbjct: 259 LDIDTNFVFVKLKGKNIGHPMNYQNVSALFKRLRKKVKFKVHPHLLRHTHATMYYRQTGD 318

Query: 304 AHELMATYGWKTVDQA 319
             ++    G   +   
Sbjct: 319 IKQVQERIGHSQIQTT 334


>gi|320202251|gb|EFW76823.1| Shufflon-specific DNA recombinase [Escherichia coli EC4100B]
          Length = 374

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 104/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 3   QKIKIRKMTISRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 60  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSG 119

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 120 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M P        +       ++ F   ++    +  +    
Sbjct: 180 TKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSY-----TSSGFKSAWRTALHELKIENLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 235 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|254993148|ref|ZP_05275338.1| integrase [Listeria monocytogenes FSL J2-064]
          Length = 384

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 93/347 (26%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  +GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLTNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQVQHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K   + + K+   G  + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  NFKDFYTLFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +            +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                 S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELAKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK 276
                + + +  ++ L         +             FI    + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLTWHTAYIKEHDIKNPLMLLFITYHNKPIDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CNTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 404

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 28/282 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +   S  ++ S   ++           D  + ++T   I     
Sbjct: 109 LDMLIKE-KESHIGIDIKEGSMSAYYSTRKRLQEFIQKKYHVSDLAFSQLTESFIYELRA 167

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    +  S+  +    ++ + + A R+          V   + + +  +   KE + 
Sbjct: 168 FCLSELGYQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGEKKAPKALDKEALD 227

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +FK+   +         R  F F  Y+G    D      +HL  +       K     T 
Sbjct: 228 KFKALRFDELEKEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDNGSLWLKFNRQKTG 287

Query: 236 ELP-----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
            L         ++L+      +    +   K  +    +    KA   +AG+    ++H 
Sbjct: 288 VLCRIKLLPEAVRLIEKMYSDERETLLPFIKYPI----YQSCLKALRLRAGISFPFTSHT 343

Query: 289 VRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            R   AT+   + G     +    G   V   E Y K   + 
Sbjct: 344 ARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 385


>gi|270291392|ref|ZP_06197614.1| phage integrase [Pediococcus acidilactici 7_4]
 gi|270280238|gb|EFA26074.1| phage integrase [Pediococcus acidilactici 7_4]
          Length = 371

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/351 (10%), Positives = 100/351 (28%), Gaps = 36/351 (10%)

Query: 15  RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + ++GK           G+R      +  T   A + A        +         T   
Sbjct: 5   KKQNGKWTARITWRDEEGKRHYKSKYNFKTQSEAELWA-----ADFQLNKRDIDSETYFP 59

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE--SRKHT 129
               ++  +    S+   ++ ++   ++ + +         +IT K  +  +    +KH 
Sbjct: 60  AYFYDWYLTYKEPSVTNRTKATYMQLYNVLKKSLLAKKPVGEITRKDYQRFINVFGKKHA 119

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  +F + +    K A+  + +  +    V     K++  +       +         
Sbjct: 120 KSTVTKFNSLIHACVKDALYDKAIEKDFVYGVSMVFNKSKTRKIDYLNIDEMNTLSTYLR 179

Query: 190 SQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232
           S        +      +Y+G R  +      + +     +I  +++              
Sbjct: 180 SSLNKHFTSKYMILTAIYTGARLGEIQALTWKDINTTFNTISIRRSWNDEEQKFQPTKNE 239

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK--- 284
                +++ D   +LL        +  I  ++     +++  +   +      G++K   
Sbjct: 240 SSVRIIKINDDLAQLLKQLKPKSSSTKIFTNQYGTVPSSSAVNKTLRESLAHCGIDKPSF 299

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIK 334
             H +R                +    G   +      Y+   D  +    
Sbjct: 300 HFHSLRHTHVAYLLSENVDLFIISKRLGHSDISTTSRVYSYLIDEYKQKAD 350


>gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5]
 gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5]
          Length = 290

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 74/286 (25%), Gaps = 29/286 (10%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            +    +          +   ++ Y +  I          IT   I   +E+     +S 
Sbjct: 2   ALKRIFRQMELNGNRARTINDYQKYMNNFIEVCNIVYISDITIDSIYEWLETMGSVQNST 61

Query: 134 IQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEG 189
            +    ++  +        ++       ++    +        ++  +  +         
Sbjct: 62  KRIRYKALSAVLNRFFENGWIETKFWRVIKIKVDEKVKEAATQEDIDRLLRILDLSNYYE 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +   A   +  +G+R +   +   +H+      +    +               +    
Sbjct: 122 FRDACAVLLMFQTGIRINTLSQLENKHINFERKCLILDGSIMKNHKLSILPISDEVLQMI 181

Query: 250 IGKETFFINNDKQKMNATQF------------SIWFKAKATKAG--------VNKSAHGV 289
           +          + K                  S    A   + G         N + HG+
Sbjct: 182 VTLIKQNNLIRESKNVENSLIFITYEGTSIQKSDKSNAIRRRLGQYSKDFVIPNINPHGL 241

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-----TKGADRIR 330
           R+  AT     GA+   +    G   ++    Y     T+ A+ +R
Sbjct: 242 RRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDSTEAANELR 287


>gi|256839862|ref|ZP_05545371.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738792|gb|EEU52117.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 409

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 82/280 (29%), Gaps = 23/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRI----SFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124
            +  ++ Y K       A ++       +++    +  K    D     +  K I     
Sbjct: 112 FREQLASY-KEKIGKEKAASTYRGLAADYKNLLLFLKEKRRIEDIAIADLDKKFIEDYYN 170

Query: 125 SRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T + A       + +++ L   A  + ++ ++P +               T+ED+Q
Sbjct: 171 WMLGTCALANSTAFCRVNTLKWLMYIAQERGWIRLHPFIGFNCLPEYK-RRSFLTEEDLQ 229

Query: 181 QFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                  +  + R     F F+ ++GL  +D      +++  +           I T   
Sbjct: 230 SIIHVKLKYKRQRAIRDMFLFMCFTGLAYADLKEITYKNIHTDSEGGTWLMGNRIKTGVA 289

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG--VNKSAHGV 289
               +  +A+  + K                           +    K G     + H  
Sbjct: 290 YVVKLLPIAIELVEKYRGDNEKKSSPDKVFPVGEYQTMVSSLRVLTRKCGSSTEITPHIG 349

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           R   A ++   G     L    G K++   + Y +  +  
Sbjct: 350 RHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPK 389


>gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 332

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 75/289 (25%), Gaps = 36/289 (12%)

Query: 70  TLKWLISEYR--KSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHI 119
           +L  L+  +   +       + ++  S+   F Q ++ +           ++ +I    I
Sbjct: 6   SLAPLLERFFTQRLMQQRQASPHTISSYRDTFRQFLKFAQQRLHRQPSRMNFEEIDAPLI 65

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + ++  +     +  S    LT++   F++A  +          V     K        
Sbjct: 66  VAFLDDLEQRQGVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQ 125

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226
               Q+              G +        + +GLR S+        L           
Sbjct: 126 FLTRQEVDALLAAPDQRTWAGRRDHAFLLVAVQTGLRLSEMTGLKRDDLVLGTGAHVRVI 185

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKA- 280
            K        +    + +L       +    +         ++               A 
Sbjct: 186 GKGRKERCTPIVRSTLAVLKAWLREPQRGEDDVLFPSARGERLTVHGVQYLLNKHRETAS 245

Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                      + H +R   A     AG     +    G ++V+  + Y
Sbjct: 246 KICPSLKQKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294


>gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901]
 gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901]
          Length = 322

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 66/294 (22%), Gaps = 53/294 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT-SMRVL 143
              A  +  S+  +  + I  S      ++  + +   +       + A Q    ++  L
Sbjct: 17  RRYAKRTIDSYLVWIRRFIVYSNKRHPAEMGDREVELFLSYLVLERNVAAQTQALALNAL 76

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
                      ++  L         +     T +++++            L    L  SG
Sbjct: 77  SFLYRDIVNRPLSQTLRFVHSHAPRKLPVVLTPDEVRRLLER--ISPVYFLPAALLYGSG 134

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------------------------- 235
           LR  +S R  V  +      I+                                      
Sbjct: 135 LRLMESVRLRVHDIDFEYCCIRIWNGKGGKHRTVTVAPELLAPLRVQTSVVERYLALDIN 194

Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF--------------SIWFKAKAT 278
                       L             +     +                  +   KA   
Sbjct: 195 NPKYGGVWLPSALRRKYTSASKELEWHYLFPSSRLSIDPETGHLASHHICETGLQKAVRK 254

Query: 279 KAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
            AGV       SAH +R   AT    +G     +    G   +   + YT    
Sbjct: 255 AAGVAAISKTVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHVLQ 308


>gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
 gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855]
          Length = 285

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 20  VTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 75  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKVDGYEE---W 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H++     + ++           +      K L    
Sbjct: 132 YFIVWFMAATGARVSELLHIKAEHIKVGYLDLYSKGGKIRRLYIPKNLRTESEKWLKNQG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 192 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 251

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 252 LADLMGHESIETTRIYLRR 270


>gi|34810656|pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues
           75-356) Bound To Dna
 gi|34810657|pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues
           75-356) Bound To Dna
          Length = 283

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 17/267 (6%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
            TL   +  Y K      +   + I++ S    I R   D     ITTK I + +     
Sbjct: 1   MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYID 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +   +SA    +++   F+ A+ + ++  N   +    K +    R    E ++ +++  
Sbjct: 61  EGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAE 120

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S     RLA E  + +G R  D C      + +    ++  KTG  I +        L  
Sbjct: 121 SSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGI 180

Query: 247 MTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292
                 +                ++ +++   S +F      +G+       + H +R  
Sbjct: 181 SMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL 240

Query: 293 SATISADAGATAHELMATYGWKTVDQA 319
           SA    +   +        G K+   A
Sbjct: 241 SA-RLYEKQISDKFAQHLLGHKSDTMA 266


>gi|13357781|ref|NP_078055.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762132|ref|YP_001752304.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920428|ref|ZP_02931743.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508815|ref|ZP_02958269.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701999|ref|ZP_02971618.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|34223085|sp|Q9PQS0|XERC_UREPA RecName: Full=Tyrosine recombinase xerC
 gi|11356972|pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma
           urealyticum
 gi|6899190|gb|AAF30630.1|AE002121_6 integrase-recombinase protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827709|gb|ACA32971.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902875|gb|EDT49164.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675778|gb|EDT87683.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700776|gb|EDU19058.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 250

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 73/248 (29%), Gaps = 20/248 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++ +     +L++N+  ++ES                 +   IR+ + +    P +  
Sbjct: 1   MKDFIRYTKKRNLSLNTIRTYESVLKHYEPVLD-------SWIKIRNKIINSNFKPRTIH 53

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +   F++  ++    +     ++ P+ + +     +K ++ +      + S    
Sbjct: 54  LHKNVLLSFFEF--KKLKRYLQNLKLLKLPQIEMKYFDVISKNNLYKKTDILDDDSLEIK 111

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            ++ ++                   N       K      +       + L       + 
Sbjct: 112 KYKTIIRFLFETGIRAHELFFLESINNRLYVLGKGNKKRQIFFVKQTFEQLQKFYENLKG 171

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F               ++ K      G N + H +R+  AT     GA    +M   G  
Sbjct: 172 FE--------TTKTLRLYIKKII---GKNFTPHSLRRSFATFMLIKGANPKTVMLQMGHA 220

Query: 315 TVDQAETY 322
            +    +Y
Sbjct: 221 NIQTTFSY 228


>gi|148998957|ref|ZP_01826391.1| putative integrase (phage associated) protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|225857830|ref|YP_002739340.1| integrase [Streptococcus pneumoniae 70585]
 gi|307126196|ref|YP_003878227.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|147755165|gb|EDK62218.1| putative integrase (phage associated) protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|225720328|gb|ACO16182.1| integrase [Streptococcus pneumoniae 70585]
 gi|306483258|gb|ADM90127.1| integrase [Streptococcus pneumoniae 670-6B]
 gi|321157190|emb|CBW39175.1| Integrase [Streptococcus phage 11865]
          Length = 382

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGLTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSTLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens]
 gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens]
 gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens]
          Length = 346

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 7/123 (5%)

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  G   +       +                   L++ P        +  ++++N
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLN 267

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG+  + S H +R   AT    AG     +    G   V     YT
Sbjct: 268 RQ-----LKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYT 322

Query: 324 KGA 326
              
Sbjct: 323 HVL 325


>gi|315576287|gb|EFU88478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582779|gb|EFU94970.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
          Length = 372

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 113/374 (30%), Gaps = 48/374 (12%)

Query: 10  FVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            V K++ + GK  +    G    G+RI+       T   A  +        +E     ++
Sbjct: 6   NVYKDK-KTGKYYFVASLGFDLKGKRIQKFKRGFRTAKEAKKAYNQFMIDYQE-----KR 59

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  T      EY K  +   +   +  +     +  +    +     I T  ++  +   
Sbjct: 60  EKITFGNFYEEYYKCWYKNHVKEGTFKTNTGIIENHLSIFNEVQINAIETVDLQKLINYL 119

Query: 127 KH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                       +P      + +++ +F+ A    ++  +    V R + + + +  WT 
Sbjct: 120 SGEYKTKTGESLSPEYINLIICNIQSVFERAFIFGFIDEDISKKVSRVRVEEKEVNIWTI 179

Query: 177 EDMQQFKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229
           +DMQ+      E        ++ F FL  +GLR  ++     + +  +   ++  KT   
Sbjct: 180 DDMQKVMLLSDESDSLLFFKKMFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLV 239

Query: 230 GTIITVELPDGFM-----------KLLAMTPIGKETFFINNDKQKMNATQ-------FSI 271
                                   + L +  I +E           +             
Sbjct: 240 KNKREFRTTTPKTKSSIRTVSLDDETLRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHG 299

Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           W K     A V     H +R   A++       +  +    G   +    E Y    +  
Sbjct: 300 WLKKLCDLADVPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYGHLYNGR 359

Query: 330 RLGIKNSRRISSVV 343
                 S++++ + 
Sbjct: 360 --MNDVSKKLTDLK 371


>gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299]
 gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299]
          Length = 361

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 77/318 (24%), Gaps = 64/318 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI------------T 115
           +  + K       A N+  ++  +               GD  +  +             
Sbjct: 29  VKRFIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQSRIELGDLQFEDLANFVGWLRNPAGH 88

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K I    +  K   +S    L ++    ++  R E           R +     +   +
Sbjct: 89  LKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHIS 148

Query: 176 K----------------------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           K                          +         + +L    +   GLR  ++    
Sbjct: 149 KGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEACHTKRDKLLIMLMYEGGLRIGEALSLR 208

Query: 214 VQHLQNNIFSIKTQKTGT---------------IITVELPDGFMKLLAM-------TPIG 251
           ++ +      I  +                    ++ EL   +   L             
Sbjct: 209 IEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYI 268

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                 +     +         +    + G+  +AH +R   AT    +G  A  +    
Sbjct: 269 FINLKDSYFGHPLKYQSVLDLIRRLGKRTGITFTAHILRHTHATELIRSGWDAAYVQKRL 328

Query: 312 GWKTVDQA-ETYTKGADR 328
           G   V    +TY   +D+
Sbjct: 329 GHAHVQTTLDTYVHLSDQ 346


>gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 409

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 81/280 (28%), Gaps = 21/280 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV----ESRKH 128
            K+      A  +   +      +           D  + ++T   I        E + +
Sbjct: 121 LKARIGIDRAKGTYPGYHYMRLTLGEFIRHRYKVKDLAFGQLTELFIHDYQAFATEEKGY 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    L  ++ + + A ++ Y           PK+     R  ++E  ++ +     
Sbjct: 181 AIDTVRHHLAILKKICRLAYKKGYSEKCHFQHFALPKQSERTPRALSRESFEKIRDVEIP 240

Query: 189 GSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
             +      R  F F  Y+G+  +D+     ++L  +       K             + 
Sbjct: 241 AYRKSHMLARDLFLFACYTGVSYADAVSITDENLYTDDNGALWLKYRRKKNEHRASVKLL 300

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNKSA--HGVRKFSATIS-AD 299
             A+  + K           +          KA A  A +      H  R   A++   +
Sbjct: 301 PEALALLEKYKDKTRETLFPLLRWSNLRRHMKALAALADIKDDLCYHQARHSFASLITLE 360

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           AG     +    G   +   + Y + + +     ++  + 
Sbjct: 361 AGVPIETISRMLGHSDISTTQVYARVSPKK--LFEDMDKF 398


>gi|167762651|ref|ZP_02434778.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
 gi|167699757|gb|EDS16336.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC
           43183]
          Length = 403

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 78/252 (30%), Gaps = 17/252 (6%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
             +  Y  + IR  G  D  +  IT    T  I     +  H PS     L  ++ L   
Sbjct: 132 KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHKPSYRNHCLCWLKRLVYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           AV    +  NP   ++  K+    +   +K  +Q+  S   +       R  F F  + G
Sbjct: 192 AVDNGILRYNPLDDIKYEKKAPTKLMYISKSQLQEIMSNPKQNPLQELARRTFIFSCFCG 251

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       H+       K  +T         + F+ L  +       + + +D Q 
Sbjct: 252 LAYVDVRNLYPHHIGTTAEGRKYIRTY--RKKTSVESFIPLHPVAEQIISLYNMTDDSQP 309

Query: 264 MNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +           +  + G       N S H  R    T+   AG     +    G   + 
Sbjct: 310 IFPLPIRSMIWFEIQELGFSLQFKHNLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIR 369

Query: 318 QAETYTKGADRI 329
             + Y K  D  
Sbjct: 370 TTQGYAKVTDDK 381


>gi|330895385|gb|EGH27723.1| phage integrase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 384

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 89/295 (30%), Gaps = 28/295 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R    +P+    T+   ++ + +      ++ ++   +    + +++   G+    ++ 
Sbjct: 68  PRAAKFAPKANQETVAGFLTRWLEGKK-RHVSSSTFDGYRKIVELRLVPALGEHMMVELK 126

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K +R  + + + +  +     + +R     A  +E + +NP       +++        
Sbjct: 127 RKDVRDWLSTLEISNKTLSNIQSCLRSALTDAAEEELIEVNPLAGWTYSRKEAPAKDDDV 186

Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-------------- 219
                + +     +   Q R   +F L++GLR S+        +                
Sbjct: 187 DPFSPEEQQAILAALNGQARNMMQFALWTGLRTSELVALDWGDIDWLREEVLVSRAITQA 246

Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------I 271
               +  T+       V+L    M  L               +      +++        
Sbjct: 247 AKGQAEVTKTAAGRRAVKLLRPAMDALKAQKAHTFLADAEVFQNPRTLERWTGDGPIRKT 306

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            +     KAGV  +  +  R   A++   AG     +    G          Y +
Sbjct: 307 MWVPAMKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAKQMGHADWMMIARVYGR 361


>gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2]
 gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2]
          Length = 283

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 98/287 (34%), Gaps = 28/287 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSG----VESRK 127
           I E+       + + N+   + +      +   +    D+  I  ++I          ++
Sbjct: 3   IEEFANFLKNENKSTNTIKGYIADIRDYNKWFHETFSKDFTIIIRQNILEYKSYLQNIKR 62

Query: 128 HTPSSAIQFLTSM---RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK 183
           +   +    L+S+        +   Q+ +AI     ++ + +  +      T+       
Sbjct: 63  NNAKTINHKLSSLLKYNHYLVYKNIQKEIAIENNDKIKIQLQYASPTKVTETEVKQFLQS 122

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241
              S+  +      FL Y+GLR S++    +           I+T K     +V L    
Sbjct: 123 ILESKNLRNYALMVFLAYTGLRISEALNIKMDDFDLDGKECIIRTGKGDKQRSVMLNSKV 182

Query: 242 MKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           +  +      +            F++   +K++ T  +  FK  +       + H +R F
Sbjct: 183 ITAVKEYLKVRSNISTANGSNYLFVSRKNKKLDRTTVNRIFKKYSNSI----TPHQLRHF 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             T + + G  AHE+    G   +     YT   D+ +L I    R+
Sbjct: 239 FCTNALEKGMLAHEVANQAGHSNIHTTLLYT-NPDKKKL-IDKMERL 283


>gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 87/258 (33%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMAT 310
                     ++  + + + K  A   G+ K+   H  R   AT      G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSVCLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSVTKHYARVLDQ 388


>gi|218890060|ref|YP_002438924.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
 gi|218770283|emb|CAW26048.1| phage integrase, putative [Pseudomonas aeruginosa LESB58]
          Length = 367

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 104/360 (28%), Gaps = 43/360 (11%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALT 52
           M P  R      LPP + K+   R G   Y +R    GR   L          A  +  T
Sbjct: 1   MAPRPRKEGSKDLPPNLYKKTDSRSGVTYYAYRDPVSGRMFGLGKDKARAIREAIEANHT 60

Query: 53  GSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
            S          + P + P      ++EY K      LA  S  +      ++  + G  
Sbjct: 61  ESLQPTIADRLSSEPSRPPRLFDDWLTEYEKIYVERGLAAASVRNTRMRLKRLRARFGTM 120

Query: 110 DYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
           D R I T  +               A    + +R +F  ++   +   NP    +  + K
Sbjct: 121 DIRDIGTIDVAGYFSEMAKEGKAQMARAMRSLLRDVFMESMAAGWTDKNPVEVTKAARVK 180

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            +  R     +  +     ++    + A E  + +G R  D      +  Q+    +   
Sbjct: 181 IKRERL--TLETWRLIYAEAKQPWLKRAMELAVITGQRREDLAAMQFKDEQDGYLQVVQS 238

Query: 228 KTGTIIT--------------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267
           KTG  +                              ++                    + 
Sbjct: 239 KTGMRLRISTSIGLAVLGLDLASVIKSCRGRVLSRYMIHHHRTISRAKAGQPIMLDTISA 298

Query: 268 QFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            F+      A K G++      S H +R  +A +  + G    +     G ++    + Y
Sbjct: 299 AFADARDRAAKKHGLDFGASPPSFHEMRSLAARLHEEEG---RDAQRLLGHRSAKMTDLY 355


>gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 405

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 109/376 (28%), Gaps = 54/376 (14%)

Query: 8   PPFVTKERTRH------GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           P ++   + R+      G  +        ++        S  + A+++            
Sbjct: 20  PLYLRVIKDRNAKFVATGVKLKRTEWDDDKQKIKKSHANSARMNAFLAQKIADAEGTVAD 79

Query: 62  NSPRKKPTT---LKWLIS----------EYRKSAHWGS-LAVNSRISFESYFDQIIRKSG 107
           +  ++K  +   LK  I            Y +       ++V +  +++ Y  +  +  G
Sbjct: 80  HERKRKSVSARKLKEAIKGKDMANFFEYAYNRCERIKGTVSVATYRNYKQYVAKFEKFIG 139

Query: 108 DFDY--RKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
             +     IT      +I     + K+ P++    L  + V+F+ A R++ +  +     
Sbjct: 140 HREIYFDDITVTMLKDYINHMSNNLKNGPTTVHYSLLILSVMFRDAQREDIIGEHIYPFS 199

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYS----GLRCSDSCRAGVQ 215
           +   ++ +G R +  ++  +    +      +  +  +  ++S    GLR SD      +
Sbjct: 200 KVRVKRDKGKRLFLNKEQVEKLRNFKIEYTGKDEVFRDMFIFSVYAGGLRFSDVVSLKWE 259

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---- 271
           H       I      T        G + +  +     E    ++    +           
Sbjct: 260 HYNKKEQRITKTIRKTGRNHNFKIGQIAIDILNKYKTEISLPSDFVFPIIEDVERFDADT 319

Query: 272 ----------------WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313
                             +       +  +   H  R   AT + + G     +      
Sbjct: 320 DYQAYIINAKNILCGQKLRRLGKDMELPFTLSFHLSRHTFATNALNNGMRIEYVSKLLDH 379

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K     
Sbjct: 380 SDIGITQIYAKVISEE 395


>gi|293415476|ref|ZP_06658119.1| integrase [Escherichia coli B185]
 gi|291433124|gb|EFF06103.1| integrase [Escherichia coli B185]
          Length = 413

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 36/345 (10%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPY--------PHESTFIPAYMSALTGST-----PKR 58
               G  I+   Y+R    +R  +                   Y S +   T      +R
Sbjct: 35  VKPSGSKIWRFTYYRPADKKRTIISLGSLNDVSLSDARERRNEYRSLIAKGTDPQDYERR 94

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           +     RKK  T + + S++ +     +LA N+           +    G+     +T +
Sbjct: 95  KREAESRKKGNTFEKVASDWYEMKKGQNLAYNTIKDIWRSLEKYVFPYIGNTPIDTLTAR 154

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                +   K   +  +  + L  +  +  +A     + IN   +V +           T
Sbjct: 155 RFVEILTPIKARGNLETLKRVLQRINEVMDFAANSGLIDINTAANVRKAFPSPTKKHMPT 214

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----T 226
                        S  S   Q RL  E+ L +  R +++  A  + +  +  +       
Sbjct: 215 IRPEQLPQLMHDLSVASIERQTRLLIEWQLLTVARPAEAAAARWEEIDLDAETWTIPAGR 274

Query: 227 QKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
            K      + L    M +L                + N    M++   +   +     AG
Sbjct: 275 MKMRRDHVIPLCGQAMAVLETMKPISAHREHVFPSLKNPMLPMSSQTANAALRRMGY-AG 333

Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
           V  S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 334 VLVS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|285018356|ref|YP_003376067.1| phage-related integrase [Xanthomonas albilineans GPE PC73]
 gi|283473574|emb|CBA16077.1| putative phage-related integrase protein [Xanthomonas albilineans]
          Length = 407

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 104/331 (31%), Gaps = 30/331 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ- 101
            A      G +P +E      +     T      ++ +      +A ++R    S +++ 
Sbjct: 71  EAKKMIAAGKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERE 127

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +  K G+    +IT + +R+  ++      P++A+     +  +++WA+ +     NP  
Sbjct: 128 LKPKFGNQKLVEITHEDLRALTDAIVERGAPATAVHAREVVLQVYRWAIERGQKVENPAE 187

Query: 160 SVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            V          R           M Q+          R A + LL + +R S+   A  
Sbjct: 188 LVRPTSIAKFEPRDRALTPDEIGLMYQYMERIGTTPSIRAAAKLLLLTMVRKSELTNATW 247

Query: 215 QHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMN 265
             +  +       ++        L     + L +                   +    M+
Sbjct: 248 SEINFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMS 307

Query: 266 ATQFSIWF---KAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +   +         A K G   +    H +R+ ++T+  +AG     +      +     
Sbjct: 308 SATLNQVLTLTYRLAQKEGKPLIKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVR 367

Query: 320 ETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
             Y K    ++    +++   +      + P
Sbjct: 368 AVYNKAEYREQRTAMLQDWADMIDEWTLNRP 398


>gi|255029664|ref|ZP_05301615.1| integrase [Listeria monocytogenes LO28]
          Length = 370

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 86/328 (26%), Gaps = 37/328 (11%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G          S     Y +       K+   +S   K    K     + K+   G  +
Sbjct: 6   DGEWKEKRLTDTSETNLMYKA---SKLLKQAEHDSSSLKEWKFKEFYELFMKTFKEGKSS 62

Query: 89  VNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFK 145
            ++   ++  ++Q +   G+      I     +  +      +  S+       +R +F 
Sbjct: 63  QSTINLYDLAYNQFVDYFGEKRKLNSIDAVQYQQFINHLSVDYAISTVDTRHRKIRAIFN 122

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202
            AV   Y+  NP +            +     T +     +   +  S  R      + +
Sbjct: 123 KAVHLGYMKKNPAIGAHISGHDVAKTKAQFMETDKVHLLLEELANFHSISRAVIFLAVQT 182

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTG--------------TIITVELPDGFMKLLAMT 248
           G+R  +      + +     SI   K                    + + +  ++ L   
Sbjct: 183 GMRFEEIIALTKKDINFAKRSITVNKAWDYKYTNTFIDTKTKKSRVIYIDNSTVQYLQSY 242

Query: 249 PIGKETFFINN-------------DKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
                 +   +               + ++    +   K           + H +R    
Sbjct: 243 LTWHTDYMKEHDIQNPLMLLFITYHNKPIDNASCNKALKKICNTINSEPVTLHKLRHTHT 302

Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322
            +  +AG     +    G   ++    Y
Sbjct: 303 GLCVEAGMDIIYVADRLGHDDINTTLKY 330


>gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 409

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   + S    + +         D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHVGIDIKKEAIHGYHSTRIHLQKFIQKKYKVSDLAFSQLTENFIHEFGQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     S+       ++ + + A R+    +      +  K      +   KE + 
Sbjct: 173 YFLGECGFQESTFYNIAIHLKTVCRLAYREGLTDVLLFDKAKISKGDKRLPKALDKEALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D    G +HL  +       K       
Sbjct: 233 KLKALNFEDLEEDMETARDIFLFACYTGAAYCDLMGLGKKHLFRDDGGSLWLKFN--RHK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +A +    + H  R
Sbjct: 291 TGVLCRIKLLPQAIRLMEKLHSDGRETLLPFMGYATYQSYLKALRLRADIPFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 390


>gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium]
          Length = 239

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 148 HSWPWFWVFAHHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVQQAGITKPATPHTLRHSLA 207

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 208 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 239


>gi|328911558|gb|AEB63154.1| putative tyrosine recombinase XerC-like protein [Bacillus
           amyloliquefaciens LL3]
          Length = 292

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 38/293 (12%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--- 126
             LI EY         A N++ S++     + +   D      ++++  ++  +++    
Sbjct: 6   SKLIEEYIFQLR---KAENTKQSYKRDLQLLNKYLSDDELRIDRLSSTIVQLFIDALENG 62

Query: 127 --------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                   ++  +S  +   S+R    +  + E          +     T         +
Sbjct: 63  TIKTNKRERYKAASINRIYASIRSFCIYTEQFEAFKDIRITKTQHISELTPKSVDVNYIE 122

Query: 179 MQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231
             + +             +     + L  +G+R S+        L             + 
Sbjct: 123 SIRKRIGDRKNKPKLINYRDLAIIDMLRLTGMRVSELVDLKKADLTLKGNPYLIHINKSK 182

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                   I+ E      + L       E  F++   +K+      +             
Sbjct: 183 GKKVRDIPISKEKFQYIRRYLESRNDDSEYVFVSRSNKKLTTRTVQMLLNEY------EI 236

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
           + H +R   AT  A  G     +    G  TV   + YT      ++    + 
Sbjct: 237 TPHMLRHTLATELAKRGWDLSTIARFLG-NTVAVVQRYT-IPTEKQMADAAAD 287


>gi|323162188|gb|EFZ48051.1| phage integrase family protein [Escherichia coli E128010]
          Length = 365

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 97/343 (28%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSP 64
            + K     G   Y           I                + +            +S 
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGAQKVMELDLYGIPSSN 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 421

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 89/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +SAI  L +
Sbjct: 147 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 206

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+  +  T ++++   +      +    R  F
Sbjct: 207 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PKFLTMDEIKIILAKEFTIKRVEQVRDVF 265

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   +    +      
Sbjct: 266 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVATSILEKYKNV 325

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G+ K+   H  R   AT I    G +   +   
Sbjct: 326 AECTGKLLPVLSNQRMNSYLKEIADVCGLQKNLCTHSARHSYATSICLANGVSMENVAKM 385

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 386 LGHADTSVTKHYARVLDQ 403


>gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 331

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 81/309 (26%), Gaps = 36/309 (11%)

Query: 74  LISEYR--KSAHWGSLAVNSRISFESYFDQIIRK----SGDFDY--------RKITTKHI 119
           L+  +   +      L+ ++  S+   F  ++       G              +  + +
Sbjct: 9   LVQRFFTQRLLEQQGLSSHTVASYRDTFRLLLAFATKRIGHTPSKLRTEDFDALLIEEFL 68

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +     R ++  +    L ++   F++    E      C  +     K     P      
Sbjct: 69  QHLEHGRGNSVRTRNTRLAAVHAFFRFVAVSEPALFLQCQRILAIPSKRCEHGPVEFLTE 128

Query: 180 QQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIK 225
            +              G++ R      + +GLR S+      Q +          +   +
Sbjct: 129 SEAAALVGAPDVRTWIGNRDRTLLLVAVQTGLRNSELTSLRRQDVVLGTGAHVRCLGKGR 188

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----- 280
             +   +    +      L        +  F ++    ++A             A     
Sbjct: 189 KMRCTPLRPDVVAVMKAWLRYQPGEPDDPVFPSSRGGHLSADALQRLVSRNVAIACHSCP 248

Query: 281 ---GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
                + + H +R  +A      G     +    G ++ +    Y     +++       
Sbjct: 249 SLKDKSVTPHTLRHGAAMSLLHHGVDLSVIALWLGHESSETTHIYLHADMQLKERALAHA 308

Query: 338 RISSVVDSD 346
             S V  + 
Sbjct: 309 TASGVAPTR 317


>gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 386

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 97/296 (32%), Gaps = 31/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSG--DFDYRKITTKHIRSGVESR-- 126
           I +Y++     + A ++       ++     +  K G  D     +    I++       
Sbjct: 93  IRDYKRQIG-KTKAQSTYRGLVDEYKCLSCYLKDKLGTEDIPLMSLDMDFIKNYYNWMLS 151

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+A + + +++ L   A+ + ++  +P           +     ++ED+Q+  S
Sbjct: 152 VRGLAKSTAFERVNTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVIS 210

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +    R  F F+ +SGL  +D      +++  +           + T       
Sbjct: 211 VKLSYRRQQAIRDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVK 270

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAG--VNKSAHGVRKFS 293
           +  +A+  I K                           K    KAG  V  S H  R   
Sbjct: 271 LLPIAVELIEKYRGVNEFKVSPDRVFPVGEIGSMEDSLKRIGEKAGCSVRVSPHVGRHTF 330

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           AT++   G     L    G KT+   + Y         +  DR+R  I    R+++
Sbjct: 331 ATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKIGGMFRLAN 386


>gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563]
 gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563]
          Length = 356

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/322 (10%), Positives = 73/322 (22%), Gaps = 65/322 (20%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              +   L ++Y           +++ S+                   T   I    +  
Sbjct: 6   DKESFYELYADYLSQKQ-----SSTKESYLKNIKPFFIYLEKQAIVHPTYHDIERYFDDL 60

Query: 127 KHTP------------------------------SSAIQFLTSMRVLFKWAVRQEYVAIN 156
            + P                               +   +   +   FKW  R+      
Sbjct: 61  INHPSKTYILINDIDYDEVSEEQRRALDQFRYKDRTIKSYRNMLNQFFKWLERENLYENI 120

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-------SGLRCSDS 209
              +           +     +  +    + + +   L  +           +GLR  + 
Sbjct: 121 VARANNNIPVPHGHAKDALDIEDVEKLLDYLKSTTDTLIGKRNYALILLAVTTGLRTIEL 180

Query: 210 CRAGVQHLQNNIFSIKTQKTGTIIT--------------------VELPDGFMKLLAMTP 249
            RA  + +Q    +      G                            D  + +     
Sbjct: 181 SRANFEDVQRRGLNTVIYVQGKGRREKDEFVIIPRKTKEVVRDYTRFREDQGIMINTDLA 240

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHE 306
               +    N   +M+A   S          G+     + H +R  +AT+S   G    E
Sbjct: 241 PLFASHGNRNKSGRMSARSISRVIANAYEAVGIHSSKITPHSLRHTAATLSLINGGNLRE 300

Query: 307 LMATYGWKTVDQAETYTKGADR 328
                   +V   E Y +  + 
Sbjct: 301 TQKLLRHSSVRTTEIYAQDLNE 322


>gi|281334679|gb|ADA61763.1| Tn554-related, transposase A [Staphylococcus epidermidis]
          Length = 370

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/325 (8%), Positives = 86/325 (26%), Gaps = 77/325 (23%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK------- 127
            Y K       ++N++ ++     +      +     ++++  +    +   K       
Sbjct: 42  RYLKYLDSVKKSLNTKKTYAYALKKFFVYLENKKICYKEVSFDNFVDFIRWMKKPFENEN 101

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    + ++  + +   
Sbjct: 102 VLSYHRKEISISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFIHMESKYSKKYKSFMHH 161

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +++  +                             + +   + L  +GLR  +   
Sbjct: 162 VNKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLGETNNIRDKFLIQLLYETGLRIGEVLS 221

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 222 LRIDDIKFDFRKGHQIVLKNRLNDNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 281

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + MN +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 282 SDYLFVKIKGRNVGEAMNYSDICSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 341

Query: 308 MATYGWKTVDQ--------AETYTK 324
               G   +           E YT+
Sbjct: 342 QERLGHSNIQTTINLYVHPTERYTR 366


>gi|157412799|ref|YP_001483665.1| site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9215]
 gi|157387374|gb|ABV50079.1| Site-specific recombinase XerD [Prochlorococcus marinus str. MIT
           9215]
          Length = 321

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 92/319 (28%), Gaps = 19/319 (5%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G       R+ +    R           ++  A+   T K   +      P TL   I
Sbjct: 6   RSGSGWQVLIRRKNYVGPRSRTFLSRDLAQSWADAVEERTKKVLNVI-----PVTLGEAI 60

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES--RKHTPSS 132
           ++Y         +     + +     +     GD     +  KH     +    K  P++
Sbjct: 61  NDYINGPLLLHRSA---ENEKYPLRVMAESWLGDIPLNDLQIKHFAVWRDKRLMKVKPNT 117

Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSE 188
            ++ L  +RVL  WA  +    +  NP   +            +T +D ++         
Sbjct: 118 VMRELRILRVLIDWARDERGAEIKNNPARHLRVRGTGDARAPFFTDQDEKKLLYELSQLS 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                   +  L +G   S+      +++      +   +     T       +  L   
Sbjct: 178 NKNHLRLTKLALTTGFPRSELLSLTWRNIDLKKKLLYIYRKNCAATDNSSALRLVPLPEE 237

Query: 249 PIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
                      D + +  +       F     KAG+     H +R  + +     G  A 
Sbjct: 238 AQKILEELQRRDGKVIELSKGSARHGFDKARKKAGLETLRFHDLRHIAISRMWRCGMNAL 297

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G + +     Y+ 
Sbjct: 298 EISACSGHRDIKMLMRYSH 316


>gi|85859869|ref|YP_462071.1| integrase [Syntrophus aciditrophicus SB]
 gi|85722960|gb|ABC77903.1| integrase [Syntrophus aciditrophicus SB]
          Length = 334

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 93/253 (36%), Gaps = 10/253 (3%)

Query: 93  ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151
              +S F+++I   G+   +KI  K +   +    + +   A + L  ++ LF   V ++
Sbjct: 71  KENKSLFEKLILAWGNK--KKIERKDVDDYLSRVANNSHYVANKELRFIKALFNHGVERD 128

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211
            +  NP   ++    +        +ED+++   F ++  +  L     L +  R ++  +
Sbjct: 129 MINSNPAEKIKFFPIEKNKKYIPPEEDIRKVFEFCNDEQKLYLTAV--LCTMARINEINK 186

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-- 269
              + +  +   +KT+K+      E      + L                 +     F  
Sbjct: 187 LKWEDIHKDYLILKTRKSKNSDLTERIIPLNETLKEVFDTVPRIAEYVFCHEDGKPYFYR 246

Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           S + K     AGV     H +R + A+  A++G    ++ A  G +     + Y +    
Sbjct: 247 SKFLKTACRMAGVRYFGYHALRHYGASRLANSGVPITDIQALLGHQRPTTTDIYLQSI-- 304

Query: 329 IRLGIKNSRRISS 341
            +  I   + + S
Sbjct: 305 RKSLIGAMKNLES 317


>gi|19745455|ref|NP_606591.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21910217|ref|NP_664485.1| putative integrase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876146|ref|NP_795373.1| putative integrase [Streptococcus pyogenes phage 315.1]
 gi|19747570|gb|AAL97090.1| putative integrase [Streptococcus pyogenes MGAS8232]
 gi|21904411|gb|AAM79288.1| putative integrase - phage-associated [Streptococcus pyogenes
           MGAS315]
          Length = 398

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 108/385 (28%), Gaps = 47/385 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++  +      T   A  +ALT    +   
Sbjct: 5   KTKYP-NIFWYETLKGK-RYYIRRSYFFQGKKKEITKSGLKTIPEA-RAALTEIEKQINE 61

Query: 61  INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
            +       T+      +  K         N+  +++S     I+++ G    R +    
Sbjct: 62  KSIGINMNITVSGYWEIFHEKRVATKRWTPNTEETYKSLMKNNILKEYGSVKLRNLNRND 121

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               + +   T    S          +   AV    +  N    +   +           
Sbjct: 122 YEVYIANMLMTKPRESVKCINNCFMAMLNDAVLNGNIPANRLKGIYVGESTIPPKNKKVT 181

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +  Q     +E    ++ F     +  GLR  +        ++ +       K     +
Sbjct: 182 MEQFQEWFIKAEQMMDKIFFSLTYLTIFGLRRGEIFGIRQMDIRFHHDGRAILKLHDSRS 241

Query: 235 VELPDGFM---------------------------------KLLAMTPIGKETFFINNDK 261
               +G                                   +L  +     +   I  D 
Sbjct: 242 NHTKNGRHGLKTKESERYVMLDLKGTELLLFLRDNATAIKKRLSIIKDKEWDYISIKEDG 301

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +N  + +  F+      G   + H +R F  T S  AG     L    G   +   + 
Sbjct: 302 NLINPNKLNDEFEKVNESVGFRVTPHMMRHFFTTQSIIAGVPMEALSKALGHTKMYMTDK 361

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           Y +  D   L ++ +   S+ +D++
Sbjct: 362 YNQVHDE--LSVQVTDTFSAFLDNN 384


>gi|317058881|ref|ZP_07923366.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
 gi|313684557|gb|EFS21392.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R]
          Length = 266

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 74  LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131
              +Y         L+ NS  + +   +Q +    ++   ++T   ++S     +   + 
Sbjct: 11  WKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFFHLQEKHAS 70

Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +  + ++S++V  ++   +  V  +  L   + +++ + I  + K+  +QF+  +    
Sbjct: 71  NTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRKEEDTILFFEKDVWEQFRRAFENNL 130

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +  FE L  +G++  +        ++     I   +     TV       + L     
Sbjct: 131 RDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQKKESRTVFFSHRAKEALWNYCE 190

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHELM 308
            K            +       FK    K +G+   + +  R   A     AG    EL 
Sbjct: 191 EKGRKEGRIWDF--SEKTLRNIFKKYREKISGLENMTIYSFRHTFAITLLRAGMPKSELQ 248


>gi|298480948|ref|ZP_06999143.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298272971|gb|EFI14537.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
          Length = 368

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 74/257 (28%), Gaps = 13/257 (5%)

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
           K LISE+          + ++   + +   +    + + +            +E    +P
Sbjct: 101 KALISEFIVHLTDSNDYSPHTVDIYYTSLKKYFEYANEVNMDNCKR--FVKMLEENSFSP 158

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +    +T++    KW  +   +                          +  +   ++ +
Sbjct: 159 QTIRLRITALEKFSKWIKKPIELKRPKMKRKLDVSNVPTEDEY-----NRLLEYLKTKSN 213

Query: 191 QPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMT 248
           +    F  +L + G R S+  +   + +     ++K +               ++ + + 
Sbjct: 214 KDYYFFIKVLGTTGARLSEFLQFTWEDIVAGEVTLKGKGNKYRRFFFQKQLQREVKIYVA 273

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAH 305
              K   F       +     +   K   +  G++      H  R F A +         
Sbjct: 274 ENNKTGLFAVGRYGPITQRGLAQSMKVWGSHCGIDSKKMHPHAFRHFFAKMFLKKTKDVI 333

Query: 306 ELMATYGWKTVDQAETY 322
           +L    G  +VD    Y
Sbjct: 334 QLADLLGHGSVDTTRIY 350


>gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909]
 gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909]
          Length = 291

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 36/294 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---------HIRSGVES 125
              Y  S         +     S  +   R        +              IR  +  
Sbjct: 2   FDAYINSLAVSGRGGIT-----SLLNHCARILSKRSTAQTYPWELLDFGKVAKIRMTMLD 56

Query: 126 RKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +  S+    L+++R +    F +      V +     V      T   R  T+++++Q
Sbjct: 57  EGYAVSTVNMALSALRAIAKTAFNFDQMNVDVLLRINAVVRVKGDTTRKGRALTRQEIRQ 116

Query: 182 FKS--FWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                   +    R     +L +    GLR  +  +         +  ++  K      +
Sbjct: 117 LLKVAKSHQEPARRCRDAAILLTLCGAGLRVGELVKLQQDDYAEGVLVVRQGKGRKYREI 176

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWFKAKATKAGV-NKS 285
            +     K L               K                 +   +     A V   +
Sbjct: 177 HVAPAVDKALTAWLAMSREGDALFTKIYRSGLPASTALTTAGVTAILEQLRITASVAEFT 236

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H +R+   T   + GA  + +    G   +     Y    D  ++    ++R+
Sbjct: 237 PHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARYDHRGDEAKVM--AAQRL 288


>gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
 gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 80/286 (27%), Gaps = 26/286 (9%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTK 117
           K  TL  L  ++          S A  +   + +  + I           D   +++   
Sbjct: 23  KQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKREDIPLKELNLT 82

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I          +K   ++   ++  ++ +   A     +  NP         +      
Sbjct: 83  FINDFEYFLRTEKKCRTNTVWGYMIMLKHIVSIARNDGRLPFNPFAGYIN-SPENVDRGY 141

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T+ ++Q   +   + +     R  F F +++GL  SD        LQ          T 
Sbjct: 142 LTQTEIQTLMNAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTTDRLQTFFDGNLWIIT- 200

Query: 231 TIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   +  ++LL +     E +       +     +    +   K    + G     
Sbjct: 201 -RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKDIGRQCGFKVRL 259

Query: 287 --HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKITAQK 305


>gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
 gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM
           17393]
          Length = 429

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 24/293 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTK 117
           KP TL  L  E+ +             +  S+E+ ++ +               R +  +
Sbjct: 114 KPFTLLALFREHNEEFRKRVGVDRKEETYESYENSYNILASFVKKRKEKEDVALRSLDRE 173

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI 171
                       R+  P +  + L  ++ + K AV Q  +  +P   L  E P+RK+  +
Sbjct: 174 FYDDFEIFLRTDREMKPKTVHEHLYRLKKMTKRAVSQGTLRRDPYGKLHPELPRRKSRHL 233

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +    + + +         + R  F F  ++GL  +D  R   + +  +           
Sbjct: 234 KLEDLKKLMETPVDKPNLQRVRDWFLFATFTGLSYADLKRLSEKDITQSDDGTYWIHI-- 291

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAH 287
                     ++LL +     E +       ++       +      + G     + + H
Sbjct: 292 RRQKTETPSAIRLLNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFH 351

Query: 288 GVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
             R    T      G     +    G K++   + Y K  DR     ++ +R+
Sbjct: 352 KARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRK--VDEDMKRL 402


>gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
 gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753]
 gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753]
 gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium
           bifidum PRL2010]
          Length = 397

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 95/383 (24%), Gaps = 57/383 (14%)

Query: 1   MTPSLRLPPFVTKE----RTRHGKIIYYFRKGHGR------RIRLPYPHESTFIPAYMSA 50
           M+   R            + + G+  Y +    G          +P           +S 
Sbjct: 1   MSKKRRDSKNRVLRSGESQRKDGRYAYKYIDTFGNPQFVYAWKLVPTDKTPAGKREDISL 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-KSGD 108
                  ++ ++           +   Y K      ++  N++   +     +   K G 
Sbjct: 61  REKVKEIQKDLDDGIDTIGKKMTVCQLYAKQIRHRGNVRYNTKNGRKRLMKLLEEDKLGG 120

Query: 109 FDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVER 163
                +     +      K       +      S++  F  A++ + +            
Sbjct: 121 CPIDSVKLSDAKEWAIRMKEKGISYKTISNDKRSLKAAFYTAIQDDCIRKNPFDFQLNTV 180

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            +  TE   P T    + F SF        +       LL +GLR S+ C      +   
Sbjct: 181 IEDDTEPKVPLTPAQEESFLSFAQNDKVYQKYYDELIILLGTGLRISELCGLTDTDINFE 240

Query: 221 IFSIKTQKTGTI-----------------ITVELPDGFMKLLAM------------TPIG 251
              I                           + + +   +                    
Sbjct: 241 NRIINVDHQLLRSAETGYYIETPKTKSGIRQIPMSEKVYEAFNRVLKRRRGAKAVTIDGY 300

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAG------VNK--SAHGVRKFSATISADAGAT 303
               F+N D     AT +   F+  A K        + K  + H +R    T  A+AG  
Sbjct: 301 SNFLFLNRDGYPKTATNYDGMFRGLAKKYNKYHEEALPKVMTPHTLRHTFCTNMANAGMN 360

Query: 304 AHELMATYGWKTVDQAETYTKGA 326
              L    G   +     Y   A
Sbjct: 361 PKALQYIMGHSNITMTLNYYAHA 383


>gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 248

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 15/219 (6%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +    L  ++ + + A ++ Y           PK+     R  ++E  ++ +       +
Sbjct: 23  TVRHHLAILKKICRLAYKEGYADRIHFQHFTLPKKTETTPRALSRESFERIRDVEIPAYR 82

Query: 192 -----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 R  F F  Y+G+  +D      ++L  +       K             +KLL 
Sbjct: 83  KSHILARDMFLFGCYTGVCYADVVSITHENLYTDEDGALWLKY--RRKKNELRASVKLLP 140

Query: 247 MTPIGKETFFINNDKQKM---NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-ADA 300
                 E +   +        + +      KA A  AG+      H  R   A++   +A
Sbjct: 141 EAIALIEKYHSGDRDTLFPLLHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEA 200

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           G     +    G   +   + Y + + +     ++  + 
Sbjct: 201 GVPIETISRMLGHSDISTTQVYARVSPKK--LFEDMDKF 237


>gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110]
 gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110]
          Length = 640

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 74/297 (24%), Gaps = 40/297 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK 127
           K  I +Y       +L+  + I   S      +   +      +  I    I   +   K
Sbjct: 213 KKYIKKYILFEVSRNLSFETLIQRLSELKLFGKFIEESFYCHRFEDIDRNLILDFLLHLK 272

Query: 128 HTPSSAIQ---FLTSMRVLFKWA--VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
            +  S  +    L++++  F+         V  +     +  K      R   +E M Q 
Sbjct: 273 TSDYSFSRKHHTLSAIKRFFETGTLNGWFNVEPSLIRREDWGKTPKTLPRFIPEEVMSQL 332

Query: 183 KSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVE 236
                             +  G R  +        L+           K  K        
Sbjct: 333 MMHIEHLPESIMRMVLVNIECGFRVGELVSLPFDCLKTNGKDGWSIQYKNHKMKKEAIKP 392

Query: 237 LPDGFMKLLAMTPIGKE-----------------TFFINNDKQKMNATQFSIWFKAKATK 279
           +      ++                               + + M++  F+ + +  A +
Sbjct: 393 ISSELALVIKEQQYYIREKLESDFKYLFCGGKLGMSPFYPEAKLMSSRSFTKYLRGLAEQ 452

Query: 280 AGVN------KSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
             +            H  R    T   +AG   H +    G ++    + Y    D+
Sbjct: 453 YQIKDCNGELWHFQSHQFRHTVGTRMINAGVPQHIVQRYLGHESPTMTQVYAHIHDQ 509


>gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17]
 gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17]
          Length = 321

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 84/291 (28%), Gaps = 26/291 (8%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITT 116
            +  P+ +P      I  + K       L+  +           +      D     IT 
Sbjct: 15  RLEEPQNQPKRFAEQIDTFVKFMRDERGLSPATITFRSEQVTHFLSTICGPDISLAAITI 74

Query: 117 KHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
             + +      S   + +S      ++R  F+++  Q + +     SV+ P+   +   P
Sbjct: 75  NDVDAYLSYQGSHGWSRTSLHTLADALRSFFRYSEAQGW-SSGIAASVDAPRIYAQEDLP 133

Query: 174 WTKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                 Q  +      S  +   + R     L   GLR  +  R  +  +      +   
Sbjct: 134 LGPTWEQVQQLITSFSSNNAVDIRDRAIVLLLAVYGLRSGEVTRLRLGDVDWVGEILHIT 193

Query: 228 KTGTIITVELP----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
           +     T + P              +        +    +N   + +     +    ++ 
Sbjct: 194 RPKQRCTQQYPLDPEVGDAILRYLKEARPRCSSRQLFMALNAPIRPLMPKCITPIVHSRL 253

Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              G++   + AH +R   A     A  +  ++    G ++      Y K 
Sbjct: 254 DALGIHVPRRGAHCLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKV 304


>gi|119952269|ref|YP_949919.1| integrase [Arthrobacter aurescens TC1]
 gi|119951399|gb|ABM10309.1| Integrase [Arthrobacter aurescens TC1]
          Length = 374

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 101/370 (27%), Gaps = 35/370 (9%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    + + +   G+    F    G+R   P+   +        A       R  
Sbjct: 1   MARRRRF--GLVR-KLPSGRWQASFIGPAGKRQAAPHTFATRADADRWLAAVELDLSRGT 57

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
               R           ++        L   SR + E      +        R +T   +R
Sbjct: 58  WVDERAASVPFLDYAEQWLNDN--RRLGPRSRETHERNLRLHLAPLATMPVRSLTPTLVR 115

Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +        K   +S  Q    +R +   AVR+  +A NPC        + +     +  
Sbjct: 116 TWYATAMRGKGGNTSIDQSYRLLRAILNTAVREGLLAKNPCQIPGAGNTRAKRRTVASPT 175

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
            +             + A     + GLR  +        L     ++   +         
Sbjct: 176 QVADLIR--EIPGPYKAAVALAAWGGLRRGEILALRRADLDLEAMTVSVHRNQVELLSSR 233

Query: 233 -------------ITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAK 276
                         TV LP   + LL             F+++    M     +  F   
Sbjct: 234 SRFDAKPKTDAGYRTVALPPHVIPLLRDHLRTYAGETRVFVSSTGGPMPGDSLTQAFSRA 293

Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
             + G+     H +R    T++A  GAT  +LM   G  +   A  Y    +      + 
Sbjct: 294 RDRLGMTGFRFHDLRHTGQTLAAATGATLADLMKRLGHSSPAAAMRYLHTVNGR---DEA 350

Query: 336 SRRISSVVDS 345
                SV+  
Sbjct: 351 IAEALSVIAE 360


>gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +        +       +  ++ +      K    +AGV K  S H +R   AT 
Sbjct: 74  WLWQYVFPAGKRSIDPRSCIERRHHVSESALQKAMKEAIHRAGVPKRGSCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|260549523|ref|ZP_05823741.1| shufflon-specific DNA recombinase [Acinetobacter sp. RUH2624]
 gi|260407316|gb|EEX00791.1| shufflon-specific DNA recombinase [Acinetobacter sp. RUH2624]
          Length = 337

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 97/323 (30%), Gaps = 21/323 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   R        R    R              A    L   + +   ++ P K   +
Sbjct: 1   MQKPTRRGNAWRIEVRFKGKRYAATRDTASECEQWAATKLLELQSEQP--VSEPEKIHIS 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            + L   Y +       +    +       +   +  D     +T   ++   + R  + 
Sbjct: 59  FQALFDMYYQDEGRKMKSARLIVQMLKCLKKNWGELADESIHNLTPALVKQWRDKRLKQV 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ------- 180
             ++ I+ +     +F +A ++ ++   NP   + +P       +  + + +        
Sbjct: 119 KGATVIREMAMYSSVFDFARKELFLTKENPFKEITKPSAPPPRHQRISDDHINKVIKGLD 178

Query: 181 QFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                     + R+A+   F L + +R  +        +  +   +   K G+   V L 
Sbjct: 179 YEWGKTPTQPRHRVAWSFLFALETAMRKGEILSVQKSLIFTDFIRLLDTKNGSSRDVPLT 238

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
               ++L            +N    + +  F + ++    + G++   + H  R  + T 
Sbjct: 239 AKAKEML----SWLPDDPNDNRMVPLTSNAFRLIWQRNLRRVGLDGVITFHDSRHEAITR 294

Query: 297 SA-DAGATAHELMATYGWKTVDQ 318
              D       L    G KT+  
Sbjct: 295 FVHDYRLPVEILAKITGHKTISV 317


>gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1]
 gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1]
          Length = 335

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 71/303 (23%), Gaps = 48/303 (15%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132
           L+   R S      A+++  ++  +  + I         ++    + + +       + S
Sbjct: 20  LMDRVRASLRVAHYALSTERTYCHWIKRFIFFHNKRHPIEMGAPEVEAFLSHLATAENVS 79

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
           A     +M  +         + +     + R +         T+ + Q         S  
Sbjct: 80  ANTQNQAMHAVLYLYKHVLGIDLPWLDGITRARESKRLPVVMTQRETQALLRHVHGTSGT 139

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            +   +     L      R     L+     I+  K        LP   +  L      +
Sbjct: 140 IIKLLYGTGMRLLEGLRLRVKDIDLERREIIIREGKGNKDRVTMLPASLVDELRDHLQAR 199

Query: 253 ETFFI------------NNDKQKMNATQFSIWFKAKATKA-------------------- 280
                             +  ++        W       A                    
Sbjct: 200 RVIHDRDLSTGHADVELPHAIERKYPQAGRQWAWQYVFAAKSYSTDPRTGIYRRHHVGEW 259

Query: 281 -------------GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                        G+ K    H +R   A+   + G+    +    G   V     YT  
Sbjct: 260 VIQRGVRAAARAAGIPKLVHPHTLRHSFASHLLENGSDIRTVQELLGHADVKTTMIYTHV 319

Query: 326 ADR 328
            +R
Sbjct: 320 LNR 322


>gi|259419083|ref|ZP_05743000.1| phage integrase [Silicibacter sp. TrichCH4B]
 gi|259345305|gb|EEW57159.1| phage integrase [Silicibacter sp. TrichCH4B]
          Length = 362

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 80/304 (26%), Gaps = 19/304 (6%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y+    G+R+R     +        +        R    S R +  T+  +   YR+   
Sbjct: 42  YWTGPDGKRVR----RKLEACTRKEAESEAIEVYRSATFSSRPQNPTIAQIWEAYREDLE 97

Query: 84  WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFLTSM 140
                  +  + +     I+   G      +  K        R+    S       L  +
Sbjct: 98  GKP----TAETMKWTGKAILPHFGHLRPDNVVKKTCTEYEALRRAAGKSQGAVHTELGHL 153

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R   K+A     +       + RP +     R  +  + +      +     RLA   LL
Sbjct: 154 RSALKFACDTRMIET--APKIWRPAKPLTDKRILSAGEARA-LINGAIEPHIRLALILLL 210

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            +  R           +  +  +I       +T     V   +   +             
Sbjct: 211 GTAGRVGALLDLTWDRVDFDRGTINLRLEDSQTRKGRAVVPMNPSTRAALDVAYRAARSE 270

Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
              +            F+   T++ + +   H +R  +A     +G    ++    G   
Sbjct: 271 HVVEYAGGQIKSIRKGFQGAVTRSKIGHVRIHDLRHTAAVTMLASGVPLEKVSQVLGHSN 330

Query: 316 VDQA 319
               
Sbjct: 331 TAIT 334


>gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri]
          Length = 361

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 78/318 (24%), Gaps = 64/318 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI------------T 115
           +  + K       A N+  ++  +               GDF +  +             
Sbjct: 29  VKRFIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQSRIELGDFQFEDLANFVGWLRNPAGH 88

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K I    +  K   +S    L ++    ++  R E           R +     +   +
Sbjct: 89  LKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHIS 148

Query: 176 K----------------------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           K                          +         + +L    +   GLR  ++    
Sbjct: 149 KGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEACHTKRDKLLIMLMYEGGLRIGEALSLR 208

Query: 214 VQHLQNNIFSIKTQKTGT---------------IITVELPDGFMKLLAM-------TPIG 251
           ++ +      I  +                    ++ EL   +   L             
Sbjct: 209 IEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYI 268

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                 +     +         +    + G+  +AH +R   AT    +G  A  +    
Sbjct: 269 FINLKDSYFGHPLKYQSVLDLIRRLGKRTGITFTAHILRHTHATELIRSGWDAAYVQKRL 328

Query: 312 GWKTVDQA-ETYTKGADR 328
           G   V    +TY   +D+
Sbjct: 329 GHAHVQTTLDTYVHLSDQ 346


>gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein
           [Bifidobacterium breve]
          Length = 274

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 79/266 (29%), Gaps = 7/266 (2%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +  I+++  S   G+ A ++  +       I +  G      +    + +    R+  P
Sbjct: 11  WRDYIAQWLDSLKAGAYAASTINTRRCQLTAISQALGGSPL-DVEASDLVAYFAGREWKP 69

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +    F W  +  ++  +P  ++  P  +     P    D+   K+      
Sbjct: 70  ETRKGARNACAGFFGWMFQTGHIDTDPSRAL--PSIRRPHPHPRPCPDIVILKALSKATD 127

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + RL       +GLR  +  +     L  ++        G      +      L      
Sbjct: 128 RERLMLRLGAEAGLRRFEIAKISDADLVRDLMGWSLMVIGKGDVQRMVPISDDLAGEIRA 187

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
               +             +        ++     SAH +R   AT + +A      +   
Sbjct: 188 HGPGYIFPGRWGSHVEASY---VGKHLSRLLDGWSAHSLRHRYATRTWEATHGLLPVSRL 244

Query: 311 YGWKTVDQAETYTKGA-DRIRLGIKN 335
            G  +V+  + Y      R+R  +  
Sbjct: 245 LGHASVETTQRYVAMPCARLRDAVSA 270


>gi|54308883|ref|YP_129903.1| hypothetical protein PBPRA1694 [Photobacterium profundum SS9]
 gi|46913313|emb|CAG20101.1| Hypothetical protein PBPRA1694 [Photobacterium profundum SS9]
          Length = 391

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 91/327 (27%), Gaps = 26/327 (7%)

Query: 22  IYYFRKGHGR-RIRLPYPHESTFIPAYMS-----ALTGSTPKREYINSPRKKPTTLKWLI 75
            Y  R    + RI +     ++   A         L  S    +  N+  +   TL   +
Sbjct: 42  QYRCRFNGKQLRIHIGKYPATSLKEARRKHKIMMELRESGRNPKIANTGEQDFVTLDDCV 101

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPS 131
           + + K     +L   ++  + S+        G F  R I T   R  ++       + P 
Sbjct: 102 NYWLKHY-VPNLKKGTQELYRSFSRNY--FLGTFPARNIETIPAREWMQWLDSISVNKPK 158

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER------PKRKTEGIRPWTKEDMQQFKSF 185
           +A    T++R    +   +  +       +++      P+  +          +      
Sbjct: 159 TANSLFTTLRACLNFCKGKFIIEKTDLDRIKKQNVGIKPEMGSRVPSWSELTQIWLAIER 218

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPD 239
               +  +   +  +  G R S+   A   H                        +    
Sbjct: 219 SRASTSNKTLHQLTMLWGNRLSELRLARRSHFDMKAGIWTVPKELSKTNRPIRRPIPTKV 278

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298
             +    M       F   N  + ++    + + +       +     H  R+  +T ++
Sbjct: 279 RTILERVMATYEDVLFPGRNLDKPISIAAANRYIRRIRDSLPLEYWRTHDFRRSLSTGAS 338

Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325
           + G   H +    G +       Y K 
Sbjct: 339 ELGVMPHVVEKMLGHELGGVLAVYNKH 365


>gi|322390622|ref|ZP_08064137.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142701|gb|EFX38164.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 903]
          Length = 421

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 95/372 (25%), Gaps = 66/372 (17%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            + G      +            + A      +  +         TL+ L   + ++   
Sbjct: 36  VKTGKQVTTTITAKTLKQLDREVIQARL-EFERNRFTRKENVSINTLEDLAEAWFQAYQT 94

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQ 135
              + N+      Y  + II K GD+   KI +  I+  +                 A +
Sbjct: 95  WVSSHNTLNRVRGYLDNYIIPKFGDYKPGKIESADIQLWLNDLAKKSKKSVESGVKRANK 154

Query: 136 --------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KED 178
                    +  ++ +F + +    +  NP  +++ P +     +              +
Sbjct: 155 GCAKDFGAVIHKLKDIFDYGITNYGLTSNPVNTIKIPPKPKSSKQRIMVLHDDSLARWLN 214

Query: 179 MQQFKSFWSEGSQPRLAFEFLLY------------------------------------- 201
             +         + +L    LL                                      
Sbjct: 215 YLESLDNSRANRRFKLICNTLLASALRINELLALTIDDLNFEESSISVNKTLLWKTANKK 274

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G +    C+A  +    N            +     +    L        +  F     
Sbjct: 275 TGTKGKVICKATPKTDAGNRSIPVPLSILEELRDFHNEMNEYLKLHNKPETKLIFPTIYG 334

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             M         K +    G+     H  R   A++  +AG    EL    G K++    
Sbjct: 335 NYMCDRNERTTLKNRLAGLGLPDYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTM 394

Query: 321 -TYTKGADRIRL 331
            TY + A + +L
Sbjct: 395 DTYAELAPQRKL 406


>gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5]
 gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5]
          Length = 323

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVR 290
                   L     G    F+N     +         +  A +AG+        S H +R
Sbjct: 212 WLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   D GA    +    G  +V   + YT
Sbjct: 272 HSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304


>gi|160914347|ref|ZP_02076566.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
 gi|160915333|ref|ZP_02077545.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158432724|gb|EDP11013.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991]
 gi|158433820|gb|EDP12109.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991]
          Length = 266

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 73/259 (28%), Gaps = 17/259 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           ++++     + + N+  S+    DQ         Y  I  K+++         + P +  
Sbjct: 4   QFKEYLEKTNFSKNTIDSYVFAVDQYF-----IQYEDINKKNLKQYKTWLIENYKPKTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++    ++  +         +  +           +             +     +
Sbjct: 59  LRLRAINCYLEFLSKGSLKLPFIKIQQKTYLENVISEADYNYLKNC----LKKDDLDWYM 114

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIG 251
              FL  +G R S+  +  V+H+Q     I ++               + L         
Sbjct: 115 VVRFLAATGARVSELIQIKVEHVQLGYIDIYSKGGKLRRIYIPVKLKKEALIWLKSRNQE 174

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N    ++     S   K  A K  +N +    H  R   A            L 
Sbjct: 175 TGFIFLNKYGNRITTRGISGQLKKFALKYDINPNVVYPHSFRHRFAKNFLAKCNDIAFLA 234

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y +   
Sbjct: 235 DLMGHESIETTRIYLRKTS 253


>gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQPCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|20091635|ref|NP_617710.1| site-specific recombinase [Methanosarcina acetivorans C2A]
 gi|19916802|gb|AAM06190.1| site-specific recombinase [Methanosarcina acetivorans C2A]
          Length = 322

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 75/285 (26%), Gaps = 25/285 (8%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            L+  +       + +  +  S++S+ +  ++              +    + R  + S+
Sbjct: 26  DLLDSFLCDCAVRNFSPRTIASYKSHLNYFLQFYPVSASTNDLKDFLVLLRDERGLSVST 85

Query: 133 AIQFLTSMRVLFKW-----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +  S+   +++      V++  +       +   K +    R     +  ++    +
Sbjct: 86  VENYFCSLSTFYEFLVWERVVKENIIPSFRKRYIRYYKEQRHEERQLINLEQMKWLIDSA 145

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
              Q +  F     +G+R  +        +      I  +      +        +    
Sbjct: 146 VDLQIKTMFLVFAKTGIRRQELIDLDRSDVYPKKNMIILKNHHFKRSNRTIFYDEECSFF 205

Query: 248 TPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGV---------NKSAHG 288
                +  + +N              +   +        A K G            + H 
Sbjct: 206 MNHWIKWRYNHNINNPALFIGPQGGRICRDRVYTVTTEHAEKLGFHDPAGKLEEKFTPHC 265

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
            R F  T    AG     +    G    +  + Y     D +R  
Sbjct: 266 FRHFFTTWLRRAGCPREYVQELRGDSRKEAIDIYHHITHDELREA 310


>gi|85059013|ref|YP_454715.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
 gi|84779533|dbj|BAE74310.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
          Length = 311

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 36/302 (11%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREY 60
            +LP  V     R     Y F+     +     ++     +     Y   +         
Sbjct: 11  NKLPKCV-----RSNGYSYVFKPHGSTKTMGLGKIKETTITQVWANYERLMAELFI---- 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    T   L + +  SA++  L   ++  +  +  +++   G      I  +H+R
Sbjct: 62  -------TLTFAQLWTYFLDSAYFSELKPRTQKDYLQHQKKLLAVFGKVSVNSIKPEHVR 114

Query: 121 SGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           + ++ R   + + A   + SM  +++W   + YV  NPC       +     R     D 
Sbjct: 115 TFMDKRGLQSKTQANYEMESMSRVYRWGYERGYVKSNPCAG---VMKFKAVKRDRYITDD 171

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           +    + +     + A E       R SD      Q +      I+ ++TG         
Sbjct: 172 EYLAIYQAADKVVKAAMEIAYLCAARLSDVLDMKWQQVTEKGIFIQQRETGIKQIKVWTP 231

Query: 240 GFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAH 287
              + +        +        +   K   +   FS  +    +KA       ++ + H
Sbjct: 232 RLREAIELARSVFTSKQTDTPVIMGQHKGHYSKRGFSNRWMEARSKASGQLGYELDFTLH 291

Query: 288 GV 289
            +
Sbjct: 292 DL 293


>gi|307287303|ref|ZP_07567367.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
 gi|306501636|gb|EFM70930.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0109]
          Length = 311

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 28/287 (9%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
              TL     ++ ++    ++   + + + +    I    G+   ++IT    + G+   
Sbjct: 3   TTLTLADYFQQWMETFKKPAVTSVTYVKYRNSHKHIYTYFGNIKLKEITRHRYQKGLNDF 62

Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + H   +   F   +R     AV +  +  +         R+ +  +       +  K 
Sbjct: 63  AKNHAKRTTSGFHKQIRAAILDAVEEGIIDTDFTRKAIITGREKKKAKVMYHSYSEWQKL 122

Query: 185 FWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                SQP     F++Y    +GLR ++     V  +      I   KT           
Sbjct: 123 IHYTRSQPLNPNNFIIYLSAMTGLRFAEVLGITVADIDFKHKLISVNKTWDYKYRTGFKE 182

Query: 241 FMK--------------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280
                                  +      G +    +++++   +   +   +    K 
Sbjct: 183 TKNASSVRTVDVDTKTLKVIKEVIRFRRFRGDDKICADDNEKLPVSATINRHLEKACQKL 242

Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
            ++  S HG+R   A+I    G     +    G K V   +  Y   
Sbjct: 243 KLSSISFHGLRHTHASILLFKGVNILSVSRRLGHKDVTTTQSVYLHV 289


>gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
 gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12]
          Length = 418

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 77/278 (27%), Gaps = 28/278 (10%)

Query: 77  EYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESR-KHTPS 131
           EY+K       L+ N+     S     +   G  D    R+I  K I   + S  +++  
Sbjct: 123 EYKKYCIEKRYLSPNTASVSISQISLFLDFMGKRDIKTFRQIQPKDISDFICSLSRYSKK 182

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQFKSF 185
           +     + +R+ FK+ + +  +  +   S        + K  +   R    + +      
Sbjct: 183 TISGIASYLRMYFKFLIYRGDLKNDLSQSVPSVSVPYQAKIPSVWDRELITKLLDTVDRS 242

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------TQKTGTIITV 235
              G +           GLR  D     + ++      I                  +  
Sbjct: 243 SPRGKRDYAMLLLACRLGLRLGDIRELTLDNIDWEAEMISITQGKTKAPLCLPLTNEVGN 302

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNKS------AHG 288
            L D        T   +    +       +    F    +     +G+          H 
Sbjct: 303 ALIDYIKFARPETNYRQVFLKLTQPFTPYSKNTHFYNIVRYWRDLSGIKFRSQQHQGLHS 362

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   +       +    G  +++    Y K +
Sbjct: 363 LRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKAS 400


>gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 352

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 98/300 (32%), Gaps = 34/300 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
           + E+        LA N+R  +E    Q         ++++T + I    +  K       
Sbjct: 32  VEEFL---RVRELAENTRKVYERQLRQFYE-WAQKPWQQVTHRDIDRYKQHLKALPSKQG 87

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQF 182
              +P++  Q + S++  FKW   ++Y++ N  L++E+ K   +  +   + ++      
Sbjct: 88  GSLSPATINQSINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKDLDEAEVDALFDG 147

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            ++  E     LA   LL  GLR  +     ++        +   K G+   V L    +
Sbjct: 148 LNYRGESEVRDLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAI 207

Query: 243 KLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             L           +              N+  +++         K  A  + + +   H
Sbjct: 208 MALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSVVDSD 346
            +R   AT     G  +         K+      Y+ +  D      +    +  +   D
Sbjct: 268 RLRHTCATSLVAQGMDSILAKRLVRIKSDRVFARYSDRALDIK--MEEAFDELYGLSSRD 325


>gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4]
 gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4]
          Length = 310

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 32/288 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSG------DFDYRKIT---TKHIRSGVESRKHTPSSAIQF 136
            LA NS+ S  S    I +               I       IR+ +   + +  S  + 
Sbjct: 13  RLAPNSQRSIASQMRSIAQLMDWPDATIGKQLSSINYQQAMQIRALLIHEQWSARSINRA 72

Query: 137 LTSMRVLFKW--------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           +T+++ + K           +  ++     +     +         TK      K   + 
Sbjct: 73  MTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDTY 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIITV 235
           G +    F   L +GLR S+     +    +   +IK                      +
Sbjct: 133 GLRTLAIFALFLGTGLRRSELAALMLADYDSATSTIKVVAGKGNKSRILFLPNWVEQHVI 192

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
              +     L        T  I    + ++        K K    GV   S H +R+   
Sbjct: 193 AWLNVRKMQLGPLICHCRTTGIIVHYRPVSQDALYRLVKDKLGDIGVMGASPHDLRRTFI 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341
           T   +     + +    G   +     Y K  D  +R        +S+
Sbjct: 253 TRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMREAAATLNYVSA 300


>gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11]
 gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11]
          Length = 328

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 85/303 (28%), Gaps = 49/303 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
           +     R    T+      Y+        +  +   +  +    +        DF   ++
Sbjct: 15  QRKKRNRDSKKTI---FEIYK--------SEKTVKDYMFHLKDFLHFVYDGENDFSISEV 63

Query: 115 TT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                         +I    E RK   +S    L++++ L+K             + + +
Sbjct: 64  IPLMQNIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFK 123

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             R  E I   + +D+++    +   S    +       L Y+G+R  +      +H   
Sbjct: 124 VNRNIENILKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLQFKHYLK 183

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------------- 260
                  +   T    ++     K L       + + +N                     
Sbjct: 184 RENEYFFKLIETKSGKDVYKPIHKSLVKKLEEYKEYLMNMYSLDLKDLDKKYIFSTSVLN 243

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    +   +      G + S H +R   AT  + +GA   E+    G       E
Sbjct: 244 NSPLSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTE 303

Query: 321 TYT 323
            Y 
Sbjct: 304 VYI 306


>gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
 gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13]
 gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1]
 gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 3_1_27]
          Length = 396

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 99/332 (29%), Gaps = 49/332 (14%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +           Y  A        + +    ++       + +   ++        +  S
Sbjct: 51  IGEAFLKEVKEQYKDAYQ-----DDKVVKIEEQKIKFLDFLEQSITNSKNTIQYP-TYKS 104

Query: 95  FESYFDQIIRKSG--DFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV 148
           ++     I +     + D   +T  +I          RK+T ++ I +   +R  F  A 
Sbjct: 105 YKDQQRIIEKFFSQKNLDLEAVTVANILDFYNHLSIVRKNTNNTIIHYHALLRKTFTEAH 164

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
            ++ +  N  L + RPK++      +  +++  F ++  +G +  L     L+ G R S+
Sbjct: 165 IRKLIKENIMLEIPRPKKEKYISEVFNLKEINTFLNYI-KGHKFELELNLALFYGFRRSE 223

Query: 209 SCRAGVQHLQNNIF------------------SIKTQKTGTIITVELPDGFMKLLAMTP- 249
                   +  +                      K +   +   + L     +L+     
Sbjct: 224 LLGLRFSVIDFDNNTILVNTKITSSEEEKLVAKQKMKNDSSYRIMPLLASIKELIIQRME 283

Query: 250 ---------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                            +    +  D + +   + +  F+    + G+ K   H +R   
Sbjct: 284 RIKKDKNFFKSSYTKKWEGFICVGEDGELIKPDRVTKTFRRLIKECGLKKIRLHDLRHSC 343

Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           AT+  +      ++    G   +      Y+ 
Sbjct: 344 ATLLYEQDIQLKDIQMWLGHSDIQTTANIYSH 375


>gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876]
 gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876]
          Length = 345

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 92/315 (29%), Gaps = 41/315 (13%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD- 108
           AL     + E          TL+  +           L   +   +   +        + 
Sbjct: 2   ALKRKKKRAERTTHKSYPKITLQQALDIAIAGKKAEGLRERTLTDYMKMWGYFTDWLAEN 61

Query: 109 ----FDYRKITTKHIRSGVE-------------------SRKHTPSSAIQFLTSMRVLFK 145
                   ++T    R+ +                     R    ++    L + R +  
Sbjct: 62  YSDIEYVNELTADIFRNYINYLQYDAIRYDGHKFITNREERGLKETTINIRLRTYRSMLN 121

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLY 201
           +  R+E +  NP  +V   ++  +     T+++++            G +  +    LL 
Sbjct: 122 YLEREELIEYNPMDNVRLLRQDIDLTNCLTEDEVKAVLAQPNQRDYVGFRDFVIINLLLD 181

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL------AMTPIG 251
           SGLR +++    V+ +      I       K      V +     KLL            
Sbjct: 182 SGLRINEALNLRVEEIDFKTRFITLTGERNKNRKPRYVPISAFVAKLLLQLIEENRAHFK 241

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELM 308
            +  F++   + + A  F+   K  A KAG+     +AH  R   A      G     L 
Sbjct: 242 TDRIFLSCFGELLGANHFNKRLKYYAEKAGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQ 301

Query: 309 ATYGWKTVDQAETYT 323
              GW  +     Y 
Sbjct: 302 KMGGWADMRTMRRYI 316


>gi|329920468|ref|ZP_08277200.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
 gi|328936144|gb|EGG32597.1| site-specific recombinase, phage integrase family [Lactobacillus
           iners SPIN 1401G]
          Length = 413

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 111/355 (31%), Gaps = 49/355 (13%)

Query: 14  ERTRHGKIIYYF---RKGHGRRIRLPYPHES---TFIPAYMSALTGSTPKREYINSPRKK 67
            +   GK  Y     R  +G+++      ++    F  A  +++   +  ++   +    
Sbjct: 10  YKDSKGKYYYNVFLGRNSNGKQVFKKGRGDALGHPFTSARAASIEA-SRIKQLYLNIDLN 68

Query: 68  PTTLKWLI-SEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
             +    +   +     +   +  ++  +    F + +    D   + I+          
Sbjct: 69  DISYAHFMKERFM--PKYKGDVEASTYDTHSRMFFKAVNFFADERLKDISVAECEKYRTW 126

Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                 ++ S A    TS R    +AV    +  NP +  +   +     + WTKE+ ++
Sbjct: 127 LLTNSGYSQSYASLIYTSFRQSLDYAVEINLITTNPSMKTKAVPKGKGIEKYWTKEEFEK 186

Query: 182 FKSFWSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231
             +  +  S       + F F    G R S+        +      ++            
Sbjct: 187 VLACINTDSFYENLIYVTFLFYYRIGCRVSEGFSLKWSDIDLTNGRVRIFHNLHYKNKLE 246

Query: 232 ------------IITVELPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFK 274
                         TV + +  +++L      ++   +       D    N +  S W K
Sbjct: 247 YEIKPYTKTNAGKRTVTIDNELLQVLKDWKKRQKKHGVTDFVLSYDNCPNNKSTLSTWLK 306

Query: 275 AKATKAG---VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTK 324
             A  AG   ++    G+R  +A+   A+ GA    +    G K+     + Y  
Sbjct: 307 RYAKLAGVARIDGR--GLRHSNASYLIAEMGADVLTVAHRLGHKSPTVTLQYYAH 359


>gi|262378264|ref|ZP_06071421.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262299549|gb|EEY87461.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 339

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 88/303 (29%), Gaps = 22/303 (7%)

Query: 32  RIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           + R     +S       +   L+     ++ I    K     + L ++Y +       + 
Sbjct: 21  KKRYSVTRDSAKECEIWAMDKLSELRSGKKAIEQGEKPKYLFRDLCAKYYQEHGRHMRSA 80

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWA 147
            +        D+I     D          I     +RK     ++          +F +A
Sbjct: 81  RTINFKIKNLDRIAPNLADKSIYDFKPADIAEWRNNRKKEVKVATLRNEHAIYSAVFTYA 140

Query: 148 VRQEYVAINPCLSVERPKRKTEGI--------RPWTKEDMQQFKSFWSEGSQPRLAF--E 197
           +++ ++  +          K +          +    + +    +   E S+  +A+   
Sbjct: 141 MKELFLIESNVWHSVTMPGKEKSRSQRITEEDQALMLKSLSWDGTTTPEISRHYVAWAFL 200

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           F L + +R  +      Q ++     +   K G    V L     +LL            
Sbjct: 201 FALETAMRQGEILAMKRQDIKEGFVHLPVTKNGDSRNVPLSKEAKRLL------ALLPKT 254

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKT 315
           N     ++  +F   +     +AG+   + H  R  + T            L    G KT
Sbjct: 255 NKQLVPLDKDRFCATWMRAKKRAGLPHINFHDSRHEAITRMVKVRKLPVEVLAKITGHKT 314

Query: 316 VDQ 318
           +  
Sbjct: 315 ISM 317


>gi|21242918|ref|NP_642500.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108416|gb|AAM37036.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 419

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/397 (12%), Positives = 122/397 (30%), Gaps = 58/397 (14%)

Query: 1   MTPSLRLPPFVTKERTRHG-----------KIIYYFRKGHGRRIRLPYPHESTFI----- 44
           + P  +    + K   R G              Y +R    R       +    +     
Sbjct: 10  LKPKSK----IYKVFDRDGMYVAVSTAGTITFRYDYRLNGRRETLTLGRYGPAGMSLAMA 65

Query: 45  -----PAYMSALTGSTPKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFES 97
                 A  S + G +P  E   + R+     T   ++  +   A    +A ++R   + 
Sbjct: 66  RERLLDAKRSVVQGLSPALEKQRAKRRLTAARTFGEMMERWLADAR---MADSTRAMRKH 122

Query: 98  YFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA 154
             D+ I+    +   +++T   +R+     K    P++AI     ++ ++ +A+      
Sbjct: 123 IIDRDILPVFQNRKLKEVTPDDLRALCNKVKARGAPATAIHVRDIVKQVYAFAILHGERL 182

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDS 209
            NP   V+     T   +       +   +F    +       RLA   +L + +R S+ 
Sbjct: 183 ANPADDVKAASIATFVPKDRALSPAEIRLAFHQLETIASYPTIRLALRLILLTMVRKSEL 242

Query: 210 CRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLAMTPIGKET-----------FFI 257
             A    +     +    K         +     + + +                  +  
Sbjct: 243 VEATWNEVDFENATWTIPKVRMKGRKPHVVYLSRQAMDIFVALHTCAAGSRFVLPSRYDP 302

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           +         + +    ++A +AG+     + H +R+ ++T+  + G     +      +
Sbjct: 303 DRCMSHATLNRVTQLIGSRAKEAGLPLDPFTVHDLRRTASTLLNEVGFNGDWIEKCLAHE 362

Query: 315 TVDQAET--YTKGA---DRIRLGIKNSRRISSVVDSD 346
              +     Y K      R  +  + +  + + +D  
Sbjct: 363 EGSRTSRSVYNKAEYAGPRRHMLQEWADMVEAWLDGR 399


>gi|184155133|ref|YP_001843473.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226477|dbj|BAG26993.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 364

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 88/301 (29%), Gaps = 30/301 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128
                 ++       ++   + +++   ++ + +   +     I  +  R  +       
Sbjct: 65  FPDYFKDWFNLYKRSNVTERTALTYHQVYNALKQYL-NVPVEDIDRRRYRQFMVDFGSNR 123

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS 187
             S+  +F + +    K A+    V  +   S +    K++     +   D  Q      
Sbjct: 124 AKSTVSKFNSLIHACVKDAMYDGVVHKDFVASTDLVFDKSKTREVDYLSIDEIQRLVSHL 183

Query: 188 EGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKTG 230
             ++      +      +Y+G R  +        ++NN                 T+   
Sbjct: 184 VKTRNVHFTSKYMILTAIYTGARLGEIQALTWSDIKNNTISINKSWNETTQDFQPTKNES 243

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AH 287
           +I T+ + D  + LL      K+  F++       +   +   +       +N+     H
Sbjct: 244 SIRTINVGDQLIALLKELNFNKKQIFVSQYHTVPTSAAVNKTLRESLKACHINRRGFHFH 303

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIK-----NSRRISS 341
            +R          G   + +    G   +      Y+   D  +            ++SS
Sbjct: 304 SLRHSHVAFLLANGIDLYAISKRLGHSDITTTSRVYSYMIDEYKNLTNNQIIKALGKLSS 363

Query: 342 V 342
           V
Sbjct: 364 V 364


>gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
 gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259]
          Length = 326

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 73/308 (23%), Gaps = 58/308 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129
           L+   R        ++ +  S+  +  + I         ++    +R  +      R  +
Sbjct: 13  LLDRVRAEIRVRHYSLRTEQSYVDWARRYILFHQKRHPAEMGAAEVREFLSHLAVERNVS 72

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            S+  Q  +++  L++       + +     V   K         T+ +++   +     
Sbjct: 73  ASTQNQAKSALLFLYR---EVLKIELPWLDEVVVAKSAKRLPVVLTQVEVRALLNAM--S 127

Query: 190 SQPRLAFEFLLYSGLR--CSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ 235
               L    L  +G+R       R            ++  K                   
Sbjct: 128 GTMGLVASLLYGTGMRLLEGLRLRVKDVEFSRREIIVREGKGNKDRVTVLPENLILPLKA 187

Query: 236 ----------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT------------ 267
                                    LA         +                       
Sbjct: 188 HLEKVRTLHERDLEAGYGAVYLPDALAAKYPNAARAWGWQYVFPSPVRAVDPRSGVERRH 247

Query: 268 -----QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                      +  A  AG++K  + H +R   AT    AG     +    G K V    
Sbjct: 248 HVYETSVQRAVREAARAAGLHKPVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTM 307

Query: 321 TYTKGADR 328
            YT   ++
Sbjct: 308 IYTHVLNK 315


>gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 392

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 39/152 (25%), Gaps = 10/152 (6%)

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                   +       L  +GLR S++    V  + N    +  +         LP   M
Sbjct: 216 LGEPWIIKREIAIIVLLYGTGLRISEALNLKVSDISNESLIVTGKGDKQRQVFILPVVKM 275

Query: 243 KLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292
            +             N  +         K+  T  +   +       +    S H  R  
Sbjct: 276 FIQEYVKACPYLSVNNEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHS 335

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT           +    G  +++  + YT 
Sbjct: 336 FATHLLQENVDIRFIQQLLGHSSLETTQVYTH 367



 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 71  LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRS 121
           L  +I  + +    + S + N+  S+       I                 K++   +RS
Sbjct: 3   LGPIIENWHEWLRCYRSYSSNTLESYMRDLKDFISFLSAHIGEEVNVGSLEKLSVPELRS 62

Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
               R     +A    + L+ +R  FK+      V      S+ RP ++    +  +
Sbjct: 63  WFSFRYARGINARSNTRALSVIRNFFKYIKNNYEVNNEAVFSLSRPIQRRTLPKALS 119


>gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 269

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 70/257 (27%), Gaps = 6/257 (2%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               I+ +      G  ++ +R   +         +       +    + + ++    + 
Sbjct: 2   WSAAIAAFVSYLGAGGRSLETRKLRQYQLLCFADVATAAP-SAVELPELVAWLDHEGWSN 60

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++       + V F W         NP   +     K    R     +     +  +   
Sbjct: 61  NTRRSVRACLVVFFTWLQATGQRPDNPARLLPTVAAKPGRPR--PCPESALRSAVVNAAP 118

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + RL        GLR ++      +H++      + +  G      L     +L      
Sbjct: 119 RERLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLGKGGRERLVPISDELAEQLEQ 178

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310
            +   F +     +         K  A       + H +R   A+ +  A      +   
Sbjct: 179 RRGYAFPSPRGGHLTPAHVG---KLIARLLPPGWTTHTLRHRFASAAYRADRDIRAVQEL 235

Query: 311 YGWKTVDQAETYTKGAD 327
            G  +V   + YT   D
Sbjct: 236 LGHASVATTQIYTALPD 252


>gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
 gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603]
          Length = 411

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 83/267 (31%), Gaps = 22/267 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVES----RKH 128
            K+      A  +   +E                 D   +++  + I          RK 
Sbjct: 121 MKALEGIDFAKGTIGRYEISMQHTRDFIKWMYKADDKPIKELDHEFISQYAFWLKTVRKC 180

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             +S +++L + + +    V+  ++  +P  + +   +K       T+ ++++      +
Sbjct: 181 NHNSTMKYLANFKKVVLICVKNRWLPGDPFANFK-LTKKAVEKVALTEAELKRVIEKKFD 239

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----G 240
             +    R  F F  Y+GL  +D        ++  I   +        T           
Sbjct: 240 AERLSLVRDIFVFSCYTGLAYADVKNLKRSDIKTGIDDKEWIFINRQKTNSASHLPLLAQ 299

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS- 297
             K+L       +    +     +   + + + K  A   G+    + H  R   AT   
Sbjct: 300 ARKILTRYRDHSKCIETDAALPVLTNQKMNAYLKEIADTCGIKEELTFHIARHTFATTVT 359

Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324
            + G     +    G  ++ Q + Y K
Sbjct: 360 LNNGVPMESVSKMLGHSSIRQTQHYAK 386


>gi|281421789|ref|ZP_06252788.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
 gi|281404147|gb|EFB34827.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
          Length = 267

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 80/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132
           ++++ K     +LA N+  S+       +        +++  K++ +          P +
Sbjct: 2   VTQFEKYLVKSNLAKNTVTSYLWTMKYFLDNY-----KEVNKKNLLAYKGYLMENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L +M    +++ +++          +           +     +     + E    
Sbjct: 57  VNLRLQAMNKYLEFSKQEKLKMKFVKAQQKNFLENVISDADYKFLKAKLKADGYDE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTP 249
                F+  +G R S+  +   +H+      + ++                  + L    
Sbjct: 114 YFIVWFMAATGARVSELLQIKAEHVAVGYLDLYSKGGKMRRLYIPKKLCTEAQRWLTEQN 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           I     F N    +++    +I  K  A K G+N++    H  R   A    D       
Sbjct: 174 ITSGYLFTNRLGNRLSTRGIAIQLKYFAEKYGLNRNVVYPHSFRHRFAKNFLDRFNDIAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5]
          Length = 198

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 269 FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                +   +  G+    + H +R   AT     G     +    G  ++   + YT G 
Sbjct: 124 IQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GV 182

Query: 327 DRIRL 331
           D  RL
Sbjct: 183 DASRL 187


>gi|331674177|ref|ZP_08374937.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
 gi|331068271|gb|EGI39666.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
          Length = 390

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 75/287 (26%), Gaps = 32/287 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK   +K  + EY       +L+ ++   +E     +      F   ++T   +++ + S
Sbjct: 89  KKNKNIKSYLDEYLIICQNRNLSPSTIRGYEKCLSAL-SALHKFHVSELTPAVLKNWIAS 147

Query: 126 RKHTPSSAIQFLTSMRV---------LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           RK    +    L+ +R          L          A    +    P      + P+T 
Sbjct: 148 RKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVLDNTPGSGDYEVDPFTP 207

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
            +            + R  F F   +GLR S+ C      +     +   Q         
Sbjct: 208 AETAAIYDACH-YPEWRNLFRFAFNTGLRSSELCALRWTDIDFIGNTAHVQTASVVGVIK 266

Query: 232 -------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKA 277
                     V+L    +  L                       +          +    
Sbjct: 267 STKTKAGTRKVQLNSEALAALQAQKPYTALKSDFIFSDPKTRAPWANADAIRKKAWGPTL 326

Query: 278 TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            KAGV     +  R   AT     G     L    G K  +     Y
Sbjct: 327 KKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEMLFRHY 373


>gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     I  +       +  ++        K    K+ +NK  S H 
Sbjct: 66  KYRGANREFVWQFLFPSKSISTDPRSGARRRHHLSEDSLQRAVKKALIKSSINKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|211731865|gb|ACJ10161.1| integrase [Bacteriophage APSE-5]
 gi|211906281|gb|ACJ11658.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 88/347 (25%), Gaps = 57/347 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        +   ++       T       + +          S    +      +
Sbjct: 1   AQELHDKRKAELWRIAKLDDF--PNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWL 54

Query: 104 RKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQ------------------- 135
                   + IT   I         R      K   +SA +                   
Sbjct: 55  LYFSGTRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKA 114

Query: 136 -FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  ++ + + +  +++  I     ++ P  + + IR    ++ ++  +   E    R 
Sbjct: 115 KHLALLKSMMR-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRS 171

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLL 245
             EF L +GLR S+        +         +   +                    +L 
Sbjct: 172 TVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCTLTRQLG 231

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIW-------FKAKATKAGVN-KSAHGVRKFSATIS 297
                                             ++A   +AG+     H +R   A+  
Sbjct: 232 NHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWL 291

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +G     L    GW++V+    Y   A       +++++I  V D
Sbjct: 292 IQSGVPLSVLQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6]
 gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 96/319 (30%), Gaps = 25/319 (7%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESY 98
           +     A +  L      +  I  P    T +   +  Y     H   LA  SR      
Sbjct: 90  DRADHSAALGHLLAVLRAQGAIAQPPVSTTPVDEELRRYDDHMNHVRGLAPKSRTMVLRI 149

Query: 99  F-DQIIRKSGD--FDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEY 152
               +  + G    D + IT +H+R            P+ A   ++S+R  F++      
Sbjct: 150 VGRLLAERFGGHAVDIKAITPEHVRRFFAEQAALHSKPAGAGSVVSSLRGYFRYRASLGD 209

Query: 153 VAINPCLSVERPKRK--TEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRC 206
           +      ++  P     +   +  T E++ Q      +      +        L  GLR 
Sbjct: 210 LVHGLIGALAYPANWALSSLPKKLTDEEVAQLVGSLNNPCRAMRRACAIVRCALDLGLRS 269

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVE-----------LPDGFMKLLAMTPIGKETF 255
            +  +  +  +  +  +I  + T                       ++    T       
Sbjct: 270 IEVAQLSLDDIDWHAGTITLRHTKGRRVDILPLPVATGEAIARYLELERPKTTNRAIFVR 329

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWK 314
            +      + A    I  +    +AG+  + +H +R   A     +G+T  E+      +
Sbjct: 330 NVAPRDAPIGADLIRITIRQAYARAGLPYTRSHLLRHTMANRLLASGSTLKEVADVLRHR 389

Query: 315 TVDQAETYTKGADRIRLGI 333
           +++    Y K   R    +
Sbjct: 390 SLNTTMIYAKLDSRSLAAV 408


>gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
 gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus
           mutans UA159]
          Length = 388

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 90/363 (24%), Gaps = 50/363 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            ++ K     G+  + +            P       A    +       +       K 
Sbjct: 24  RYLYKYVDSFGETQFIYSWKL--VATDRVPAGKRDCIALREKIAEIQKDVQDGIDVIGKK 81

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSG---V 123
            T   L   Y K      ++  N++   +   + +   + G      I     +     +
Sbjct: 82  MT---LCQLYAKQNAVRPNVKANTKSGRKYLMEILKNDRLGARSIDSIKPSDAKEWAIRM 138

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
                  S+   +  S+R  F  A++ +YV  NP            T      T E   +
Sbjct: 139 SENGFAYSTINNYKRSLRASFYIAIQDDYVRKNPFDFQLNTVIDDDTIPKTVLTSEQEAR 198

Query: 182 FKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIF---------------- 222
              F    +     ++ +L    +GLR S+ C   V  L                     
Sbjct: 199 LLDFAKSDTVYHKNYDEILILLKTGLRISELCGLTVSDLDFENHLISVDHQLLRNTELGY 258

Query: 223 -SIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFS 270
                +   +   + +      L                      F+N       +  F 
Sbjct: 259 YIETPKTKSSERQIPMEATCQALKRTLAKRDDRKCVEIDGYSHFLFLNRKGYPKTSGDFD 318

Query: 271 IWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
              +    K          + + H +R    T  A+AG     L    G   +     Y 
Sbjct: 319 RILRNLIKKYNKYHEEKLPHITPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNYY 378

Query: 324 KGA 326
             A
Sbjct: 379 AHA 381


>gi|293409503|ref|ZP_06653079.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469971|gb|EFF12455.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 380

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 102/362 (28%), Gaps = 49/362 (13%)

Query: 4   SLRLPPFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + LP  +  +  +  GK+   ++     R       E+        A T    +R    
Sbjct: 9   KISLP-NLYCKLDKRTGKVYLQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQI 67

Query: 63  ----------SPRKKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                       R+   T+   + +Y            L  NS               G 
Sbjct: 68  LSVNERLERMKGRRSDITVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGM 127

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVE 162
              + IT   I   +++ K       +    +R++     ++   A +      P  + +
Sbjct: 128 QHLKDITALDIAEIIDAVKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATK 185

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
           +P+ +    R    E    F+S        +      L +G R  + C      + +++ 
Sbjct: 186 QPRNRVNRQRLSLPEWQAIFESVSRRQPYLKCGMLLALVTGQRLGEICNLKFSDIWDDML 245

Query: 223 SIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            I  +KTG+                   V        +       + T    N   +++A
Sbjct: 246 HITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSA 305

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              +  FK    K G+        + H  R  S  +  + G          G K+    +
Sbjct: 306 NTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTD 362

Query: 321 TY 322
            Y
Sbjct: 363 RY 364


>gi|229824140|ref|ZP_04450209.1| hypothetical protein GCWU000282_01444 [Catonella morbi ATCC 51271]
 gi|229786494|gb|EEP22608.1| hypothetical protein GCWU000282_01444 [Catonella morbi ATCC 51271]
          Length = 373

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 109/362 (30%), Gaps = 44/362 (12%)

Query: 18  HGKIIY--YFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +GK  Y   F+  H G+  ++          A MS             +      +   L
Sbjct: 8   NGKYRYCERFKNPHTGKVKKISLVSSKKNDKANMSVKLYEAYTATLGATSASSEVSFGEL 67

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
           + E+  S +  ++  ++ I+  +  D I    G F   K+    +   +     +     
Sbjct: 68  VDEWF-SVYVQTVRKSTAINRRNVVDHIKSDLGHFLASKVDDIMMNQHLLRLSKSGRPYS 126

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    ++ + K+ V+  Y   +             K    +    ++++       E
Sbjct: 127 YTNKRREVLKHIIKFGVKYGYYDNDFSEKLVVERINMPKENTYKYLEHDEIKSLVQQLEE 186

Query: 189 GSQPRLAF--EFLLYSGLRCSDSCRAGVQH--------------LQNNIFSIKTQKTGTI 232
             +P +A    F + +G+R  ++     +                 + +      KTG  
Sbjct: 187 MGKPEVANLSMFQMLTGVRIGEAVAIDYEQDIDLTSRTITINKSWSHMVNDFGPTKTGKD 246

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI----------WFKAKATKAGV 282
             + + D  + L+    +  +T  +       + T               F  + +K  +
Sbjct: 247 RVIHINDDTIALIKKQILISKTKKLRYKSISPDNTLLFTTRTGKPYSLLQFNRELSKVNI 306

Query: 283 NK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA----DRIRLGIK 334
                + H  R    T++ + G   H +    G       E  Y   +    D +R  I+
Sbjct: 307 PGKRVTTHYFRHTFVTLAIEHGIPLHLIAHHVGHTDTKMIEKIYAHHSQKLDDSLRQSIE 366

Query: 335 NS 336
             
Sbjct: 367 RM 368


>gi|268680614|ref|YP_003305045.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268618645|gb|ACZ13010.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 359

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 103/330 (31%), Gaps = 34/330 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++R G +   F       +R L               L     ++      +K P T+++
Sbjct: 4   KSRDGNLYVRFFVEDREIVRSLKLEDTKKNRTLAKKVLFPELARKIASGEYKKVPKTVRY 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              +Y        L  N   S+       + I +  GD     IT  +I+  + S K   
Sbjct: 64  YSQKYLA------LQEN-MKSYRYVECRVEAINKAFGDKTIDSITKLNIKEWLNSFKIKN 116

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S   +L +++ +F+ A   E +A N    V   + +     P+++E++ +  ++ ++  
Sbjct: 117 ISKKNYLVALKGIFQVAYDDEVIAKNIASEVSIGRYEQVEADPFSEEEVSRLLAYANDEF 176

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL------------QNNIFSIKTQKTGTIITVELP 238
           +  L       +G+R  +     +Q +            +N+      +   +I  + + 
Sbjct: 177 KNYL--GIAFNTGMRIGEILGLMLQDIDEDSISIKRAVSRNSKEPTTPKTQKSIRKIPIL 234

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKS-AHGVR 290
           D     L                          +A      + +   ++ V     +  R
Sbjct: 235 DACRPYLEDQIRRAREKRTMFLFMSEVTGKFYHDADALKKKWLSVLKRSKVRHRKLYNTR 294

Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQA 319
              AT    +G  +   +    G       
Sbjct: 295 HTFATAMLRSGKVSVLTVAKMLGHTNSKMV 324


>gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHIFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|206601491|gb|EDZ37975.1| Recombinase [Leptospirillum sp. Group II '5-way CG']
          Length = 373

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 108/336 (32%), Gaps = 35/336 (10%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G       K    RI     +  T    +   +     +  +++    + TTL   
Sbjct: 17  RKRSGSWEATIDKKGFNRIS-RTFNTKTEAEVWTRHIENEMDRGIFVSRKEAENTTLAEA 75

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y +    G       I+   ++              I  K I +  + R     +A 
Sbjct: 76  LDRYGREISSGKKGERQEIARIRFWK--SHPMAKRFLASIQGKDIAAFRDERIKDGYAAN 133

Query: 135 QF---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A ++  +A  +NP   +  P +     R     ++++  S     
Sbjct: 134 SVRLDLAIISHLFEIARKEWGMAGLVNPVQQIRLPLKPPGRDRRLMSGEIERILSASGSS 193

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247
             P +A  F + +G+R ++      + +     ++     K G    V LP   +++L+ 
Sbjct: 194 VLPDIA-RFAIETGMRQAEIAGMTWELVDLKKRTVTLLNTKNGEKRIVPLPIEAVRILSG 252

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------------------VNKSAHG 288
            P   +            +   ++ ++   ++A                     + + H 
Sbjct: 253 LPRRIDGNVWGI-----TSHAVAVAWRRAVSRARAVYEKECEEKGEKPDPAFLTDLTFHD 307

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G  A ++    G KT      YT 
Sbjct: 308 LRHEATSRFFELGLRAEKVKEITGHKTYSMLARYTH 343


>gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei]
 gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei]
          Length = 319

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 86/275 (31%), Gaps = 14/275 (5%)

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---T 116
              +P     T   L++ +  +      +  + + +++   +++  +     +  T    
Sbjct: 32  RKTAPIPPTNT--QLLNLFLSAKTIEGKSPKTMMYYKNTLTRLLTTTKKTIKQTTTNDLR 89

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
            ++     +   +  +       +   F W   ++++  +P   + + K      +  + 
Sbjct: 90  NYLSEFQNTHGVSNVTIDNIRRILSSFFSWLEDEDFIIKSPMRRIHKVKTIKVVNKTLSD 149

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235
           ED+++ +       + R   EFL  +G+R  +     +  ++     +I   K  +   V
Sbjct: 150 EDLEKIRETA-SSYRDRAIVEFLASTGVRVGEIVNLDINAIRLAERSAIVLGKGNSEREV 208

Query: 236 ELPDGFMKLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
                    L      +                ++         K    K+ VN    H 
Sbjct: 209 YFDARTKIHLERYLKTRTDKNEALFVSHKRPNNRLTIGTIESIVKKIGEKSLVNHVHPHK 268

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            R+  AT + D G    ++    G   +D    Y 
Sbjct: 269 FRRTLATRAIDKGMPIEQVQKLLGHVRIDTTMNYA 303


>gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 395

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 88/375 (23%), Gaps = 52/375 (13%)

Query: 13  KERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
           +   R G        G     GR   L          A +        ++          
Sbjct: 5   RRNKRTGAWEVRAYAGKDPVTGRVRNLSRTLPPDTPEAEVGDAKAELDRQAAFCRGSGAS 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            T+  +++           +  +  ++ S+    +    G             S  ++ +
Sbjct: 65  WTVGGILAYDLSLLPSLGYSPTTVDAYASHLRCYVDPLVGGVRIDDAQPYMFASLYKALR 124

Query: 128 H---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                       ++  Q    +   F        +  NP   V  P+++     P ++ D
Sbjct: 125 EDGGKDGNPLAANTVRQVHAHLSGSFGRLAETHVIGFNPIAGVTPPRQERVEAVPLSEPD 184

Query: 179 MQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------------ 219
               +S    G           L +G R  +      +                      
Sbjct: 185 FSTLQSRADAGGGIDEEIAALDLATGFRRGEVSGFQERDWSFRRSDMSVERVVVQSASAG 244

Query: 220 --NIFSIKTQKTGTII-------------TVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
              ++     K G                  E     ++            F   D    
Sbjct: 245 SPWVYKSPKSKAGIRRVSLDAETNDRLADWYERSRADLRADGFRRTASTPLFAREDGSPY 304

Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
             +     F A A + G++     H +R   AT   D G +   L    G  +V+   + 
Sbjct: 305 LPSMVYAGFSAMAREVGLDPAAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQI 364

Query: 322 YTKGAD-RIRLGIKN 335
           Y      R     + 
Sbjct: 365 YGHVLPGRDEAAAEA 379


>gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
 gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029]
          Length = 323

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVR 290
                   L     G    F+N     +         +  A +AG+        S H +R
Sbjct: 212 WLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLR 271

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323
              AT   D GA    +    G  +V   + YT
Sbjct: 272 HSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304


>gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440]
 gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440]
          Length = 322

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 44/306 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSGV 123
           LI ++         + ++  ++      +   + D               + ++ +RS  
Sbjct: 4   LIEDFLTDRATRKPSPHTVEAYRRDLRTVASIAADALTSPLPLDALPLAALHSRTLRSAF 63

Query: 124 ESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW------- 174
                T S+A   +  ++    F + V    VA NP  +V RP+      +P        
Sbjct: 64  AHFAATRSAASVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRGADTPE 123

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
              T       +       +        L  GLR ++     V  L   +   +    G 
Sbjct: 124 QLLTAVARVDGRQRDPWPQRDLAVLALALCGGLRLAEMLALRVASLAGRVGERRLDVAGK 183

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKAK 276
                 V +     ++LA         F +   +                        + 
Sbjct: 184 GGRPRVVPVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQYLVDSC 243

Query: 277 ATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRI 329
             +AG+          H +R   AT  A+ GA+A E+M   G  ++  ++ Y +  A + 
Sbjct: 244 FRRAGIGDRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQ 303

Query: 330 RLGIKN 335
           R  ++ 
Sbjct: 304 RAAVRA 309


>gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis]
          Length = 106

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            +++   +   +    KAG+      H +R   AT   + GA    +    G + +   +
Sbjct: 26  PISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQ 85

Query: 321 TYTKGADR 328
            YT  + +
Sbjct: 86  IYTHVSMQ 93


>gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 297

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 32/285 (11%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTPSSAIQF 136
            LA NS+ S  S  + I    G  D                +I++ + ++  +  S  + 
Sbjct: 13  RLAPNSQRSIASQLNSIADMMGWTDEEREDKYHHIDFQQATYIKTKLITQGWSARSINRA 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------PWTKEDMQQFKSFWSE 188
           + ++R + K AV    V     + +    +   G             K  ++  +     
Sbjct: 73  MIAIRSIVKIAVLSGLVPEMQSIQLRAISKVNHGKHDGKPLSTEQVNKLLIKLQRDKSVL 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           G +       LL +GLR S+         ++     ++  K     TV LP      L  
Sbjct: 133 GIRNYALISTLLGTGLRRSELVALLVEDFIEGTALIVRKGKGNKSRTVHLPAWTQLALNQ 192

Query: 248 TPIGKETFFIN-----------NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295
               +     +                +++       K      G+   S H +R+   T
Sbjct: 193 WLTLRSKSNGHLFVRVAKGGNIKHNTALSSCSIYSLTKKSLASIGIEGVSPHDLRRTFIT 252

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
              +     + +    G + +     Y K  +  ++  + +  +S
Sbjct: 253 RLLEQNVDINTVRQMAGHEDISTTIMYDKRDE--KVMKEAASLLS 295


>gi|218281819|ref|ZP_03488158.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
 gi|218217108|gb|EEC90646.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989]
          Length = 481

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 110/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R+GK  +IY +    G R +    +E+               K+E  +   +K  TL 
Sbjct: 23  RERNGKFNVIYSYTNEKGERKQKWETYETKAEAKRRK--KEIEYKKEMGSFVVRKCKTLD 80

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            LI+EY       + A+++     S   + I+   GD    +I T+ I    +S      
Sbjct: 81  ELITEYVALYGKENWALSTYEGNVSLINNYILPIIGDTKLSEINTRFIERYYQSLLKRRA 140

Query: 131 ----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+       +R  F+ AV+ E +  NPC     PK K++    W
Sbjct: 141 VINPLNKTSRNEFVSSSTVRDINKLLRNCFEQAVKWELMEKNPCTHATVPKHKSQKRDIW 200

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T + +        E  + +LA        LR  +        +  +  +I+  +    I 
Sbjct: 201 TADTLMYAL-SVCEDERLKLAINLSFSCSLRLGELLGLTWDCVDISPEAIEENRAYVFIN 259

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K+   +   K     +     F           
Sbjct: 260 KESQRIRKESLNALDGKDVLLVFPTNHKKNSTVRILKTPKTESSVRKIFLPKSVANMLVD 319

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K       +     H  R  
Sbjct: 320 WKVEQDEMKEILGDEYMDYNLVMASTFGLPLGDGAIRGPLKKLIEDYNLPPVVFHSFRHS 379

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   V+   + Y+   D  R 
Sbjct: 380 SVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRR 420


>gi|167571459|ref|ZP_02364333.1| phage-related integrase [Burkholderia oklahomensis C6786]
          Length = 342

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 98/336 (29%), Gaps = 32/336 (9%)

Query: 9   PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           P         G   YY+  G   GRR   P   +        + L G     + + S   
Sbjct: 12  PRFRSRTNADGTKRYYYDHGAIEGRRFLEPLGTDRVVALQRWAELEG-----KRVPSAET 66

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
              T   L   YR+       ++ +R  ++ +  ++    GD +   +T   + S   + 
Sbjct: 67  TRHTFAMLDRAYRQ-RELPHKSLATRRMYDLFLTRLAAVIGDRELDTLTPADVASIWRAT 125

Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                  +A +    + ++     R   +            +K  G +    +D      
Sbjct: 126 AEKRGVVTANRTKAVLSLVLN-CGRLWDMMTIANPCAGVRGKKETGRQDILIDDELYASV 184

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
           +       R A +       R +D       ++       +T+KT   +T+++     KL
Sbjct: 185 YAVADEPLRNAMDLADLCAQRPADILGVQRSNIVKGNLIFRTRKTRAFVTIQITGELAKL 244

Query: 245 LAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSA 294
           +      + +    +           +   Q    F     KAG+NK+      +R    
Sbjct: 245 IERLLAWRGSKVDVSPYLLRDEEGYPLTKGQLRSRFDKAREKAGINKAKFQFRDLRARGV 304

Query: 295 TIS-----ADAGATAHELMATYGWKTVDQAETYTKG 325
           T        +AG          G         Y +G
Sbjct: 305 THKTIDEGLEAG------QRLAGHSGPGMTARYVRG 334


>gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
 gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein
           [Mycobacterium avium 104]
          Length = 160

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---FMKLLAM 247
           + R+        GLR ++  R   + +     +I     G                L   
Sbjct: 4   RTRVMILLAALGGLRVAEISRVRGEDIDIAKPAIHVVGKGKRSAWLPLHVLLVDAALTMP 63

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           T               +++   S        +AGV  + HG+R +  T   D GA    +
Sbjct: 64  TRGWWFPANSRRPGDHVHSKSVSDIIGNAMRRAGVRGTPHGLRHWYGTTLLDDGADLRTV 123

Query: 308 MATYGWKTVDQAETYTKGADRIRLGI 333
                 +++   + YT+  D  R   
Sbjct: 124 QELLRHRSLSTTQIYTRVTDERRAAA 149


>gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium]
 gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium]
          Length = 167

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 2/101 (1%)

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
                        F            +      +  +      +  K     +G+    +
Sbjct: 67  YKNAAREWCWQYVFPSSRLSVDPRSSSVEPVRRRHHVEEGALQLAMKKAVRASGIQKPAT 126

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H +R   AT   + G     +    G K V     YT   
Sbjct: 127 CHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 167


>gi|28896084|ref|NP_802434.1| integrase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|28811334|dbj|BAC64267.1| putative integrase (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 413

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 108/385 (28%), Gaps = 47/385 (12%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++  +      T   A  +ALT    +   
Sbjct: 20  KTKYP-NIFWYETLKGK-RYYIRRSYFFQGKKKEITKSGLKTIPEA-RAALTEIEKQINE 76

Query: 61  INSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
            +       T+      +  K         N+  +++S     I+++ G    R +    
Sbjct: 77  KSIGINMNITVSGYWEIFHEKRVATKRWTPNTEETYKSLMKNNILKEYGSVKLRNLNRND 136

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
               + +   T    S          +   AV    +  N    +   +           
Sbjct: 137 YEVYIANMLMTKPRESVKCINNCFMAMLNDAVLNGNIPANRLKGIYVGESTIPPKNKKVT 196

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
            +  Q     +E    ++ F     +  GLR  +        ++ +       K     +
Sbjct: 197 MEQFQEWFIKAEQMMDKIFFSLTYLTIFGLRRGEIFGIRQMDIRFHHDGRAILKLHDSRS 256

Query: 235 VELPDGFM---------------------------------KLLAMTPIGKETFFINNDK 261
               +G                                   +L  +     +   I  D 
Sbjct: 257 NHTKNGRHGLKTKESERYVMLDLKGTELLLFLRDNATAIKKRLSIIKDKEWDYISIKEDG 316

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +N  + +  F+      G   + H +R F  T S  AG     L    G   +   + 
Sbjct: 317 NLINPNKLNDEFEKVNESVGFRVTPHMMRHFFTTQSIIAGVPMEALSKALGHTKMYMTDK 376

Query: 322 YTKGADRIRLGIKNSRRISSVVDSD 346
           Y +  D   L ++ +   S+ +D++
Sbjct: 377 YNQVHDE--LSVQVTDTFSAFLDNN 399


>gi|320322906|gb|EFW78996.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329971|gb|EFW85959.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330874767|gb|EGH08916.1| phage-related integrase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 402

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 109/373 (29%), Gaps = 42/373 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGST--- 55
            +     +    T  G I + +    +GR+  +          T   A            
Sbjct: 18  KVNDRDGLYVAVTAAGSISFRYNYSINGRQETITFGRYGVGGITLAEARERLGEAKKMVS 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                  ++    +  K   T      ++ +      +A ++R    S +++ +    G+
Sbjct: 78  AGKSPAKEKARAKARIKGAETFDAWAEKWLRGYQ---MADSTRDMRRSVYERELKPHFGN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +I  + +R+  ++      P++A+     +  +F+WA+ +     +P   V     
Sbjct: 135 QKLVEINHEDLRTLTDAIVERGAPATAVHSREIVMQVFRWAIERGQKVESPADLVRPASI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R       +    +            R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALGPDEIALMYQYLDRIGTACSVRAAAKLLLLTMVRKSELTNATWNEINFSE 254

Query: 222 F-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIW 272
                 ++        L     + L                     +    M+    +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSQQALDFFIALKTFAGGSDYVFPSRYDSDLPMSTATINQV 314

Query: 273 F---KAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G   S    H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 LTLSYRLAQKEGQPLSKFGPHDLRRTASTLLHEAGYNSDWIEKCLAHEQKGVRAVYNKAE 374

Query: 326 -ADRIRLGIKNSR 337
             D+ R  +++  
Sbjct: 375 YRDQRRAMLQDWA 387


>gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132]
 gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132]
          Length = 275

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 16/260 (6%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
           LI  + +    G     +  ++ +          D+   K T + I   + +      P 
Sbjct: 4   LIERFTELLKKGKYNSATIAAYRNAIFVFYNNFRDYPQNKFTDELISEYILNLSKKTNPQ 63

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            A Q   ++ + F     ++          E    +             Q      +  +
Sbjct: 64  VAAQTGKAIILFFDKIYNRKLNIKATGKIKEEQTIEILSKSEL------QTLFSSIKNLK 117

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTP 249
            +L    +  +GL+ +++    V  +     +IK    +      + L      L+    
Sbjct: 118 HKLLLIMIYNNGLKVNEAINLKVGDIDTENNTIKIDADQPKKSRLLRLSPALNGLIEEYK 177

Query: 250 IGKETFFINND----KQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGAT 303
              +   +           +A    + F+    +A + K+A    +R   A  S + G +
Sbjct: 178 QKYKPSDVFFPGSGGIGHYSARNIQLVFQKALKEAKIEKAAKLTTLRHSFAVHSLENGIS 237

Query: 304 AHELMATYGWKTVDQAETYT 323
            + L    G   +     Y 
Sbjct: 238 INHLQKILGHSNIQTTSFYA 257


>gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes]
 gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes]
          Length = 413

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 98/326 (30%), Gaps = 30/326 (9%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS 91
           +   P   + + +   +SAL         +   R +   +  +   Y  +     LA ++
Sbjct: 80  KHWSPDTGDRSALRRVLSALREEGLIPGALPVERTEHEQIVDVFGAYLSNE--RGLAAST 137

Query: 92  RISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145
             S++     +  ++    G   +  +T + +   VE      +  S       +R L +
Sbjct: 138 VGSYKLLSLRFLREVCPA-GANGFAALTPEIVIGYVERHALDGSADSGKAMCGVVRALLR 196

Query: 146 WAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFL 199
           +   + +++      V   +R            E +Q+           G +       L
Sbjct: 197 YLHLKGFISTALADCVPSIRRWRLAGLPTFLPPEKVQKVLDACDRTTAMGHRDYAVLMIL 256

Query: 200 LYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
              GLR S+     +  +             + Q T  +           +    P    
Sbjct: 257 AKLGLRASEVATLNLDDIDWQSGTILVHGKGRRQATMPLRHDVGTAIVAYIRHGRPASAC 316

Query: 254 TFFINNDKQKM----NATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAH 305
                          +    ++  K    +AG++      AH  R   AT    +GA+  
Sbjct: 317 RRVFLRTLAPHVGFASGCAITMIAKQALERAGIDGYAHHGAHLFRHSLATDLLRSGASFA 376

Query: 306 ELMATYGWKTVDQAETYTK-GADRIR 330
           E+      +++D    Y K   D++R
Sbjct: 377 EIGQLLRHRSIDSTRIYAKLDVDKLR 402


>gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 421

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 25/301 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS-----GD 108
            +E      K   TL  +     +S       ++   +  +F                GD
Sbjct: 95  LKEQYQHQNKPTPTLIEVYQSVCESKEALQGKTIGKATVRAFRDSRKNFALFLKKRGSGD 154

Query: 109 FDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
              ++     I            +  S+    L  +  + + A+++ Y+  +P     +E
Sbjct: 155 CLPKEADKDLIEHYRLFMLRDLGNKESTVSNRLRHLHQVIRKALQERYIREDPFEQIDIE 214

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +       +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 215 TPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDD 274

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +       +   +   +     + F+   +    
Sbjct: 275 GRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGLLFREFP-TNSHFNRKIRDIII 333

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y K   + ++  
Sbjct: 334 KAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAR 392

Query: 334 K 334
           +
Sbjct: 393 E 393


>gi|282864969|ref|ZP_06274023.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282560394|gb|EFB65942.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 394

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 99/367 (26%), Gaps = 55/367 (14%)

Query: 12  TKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            K     GKI Y    G G+     R              + ++    ++   +      
Sbjct: 5   KKIVLASGKIRYRAVIGIGKHENGKRRQLTITKDTAKEVKAEISRIENEQNTGSFVPPHL 64

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125
            T+   I ++ +      L   +  ++ +  D++  K G+   +++T + + + +     
Sbjct: 65  ITVNQWIDQWLE-KKAEDLEETTVYNYRTTLDRVRGKLGNIKLQELTEEDVEAWMLWSLK 123

Query: 126 -------RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173
                  +  TP   +S    L  ++ +   AV +  V +N    +  P++  +  R   
Sbjct: 124 FGRVRGDKAGTPLGVTSVDMSLARLKDVLNRAVTKRLVQVNVASEISIPRKARKVERKTK 183

Query: 174 ---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------- 217
                    +              A   L   GLR ++ C      +             
Sbjct: 184 GKLEPWNVKEVHAFVQGIAGDRLYAPLLLSLMGLRPAEVCGLRWADIDLADDTLIVANTR 243

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINN 259
                  +    T+       + LP    + L                         +N 
Sbjct: 244 TMMGNKTVIEKDTKSMAGERVLPLPAPVKEALKKFKALQAAEKLALGTGYADVGYMCVNV 303

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             +     Q            G+ +   +  R    T  A+ G   H L    G   V  
Sbjct: 304 TGEVHTTKQLRTRAYKLMADIGLRQVRLYDARASCFTYLANNGVPDHLLARWAGHTNVKT 363

Query: 319 AET-YTK 324
            +  Y K
Sbjct: 364 TKRWYVK 370


>gi|224373197|ref|YP_002607569.1| phage integrase [Nautilia profundicola AmH]
 gi|223589506|gb|ACM93242.1| phage integrase [Nautilia profundicola AmH]
          Length = 301

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 21/283 (7%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L +EY +       + ++  + +SY+      K G         K  +  V     
Sbjct: 12  TFDELFAEYCEIMKHTMTS-HTLRTKQSYYKTHFGHKYGHIIITDFKYKDAQLFVNELLD 70

Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
               P +    +   +VL+K+A+  EY   NP   V+ PK        +T E++++F   
Sbjct: 71  KGLQPKTVKNIVDIFKVLYKYAIMNEYCEKNPFEFVQLPKFDNRIYFNFTDEEIKRFIYT 130

Query: 186 WSEGSQPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                  +    F  L  G R ++       H+                   +      +
Sbjct: 131 AINFPNVKFRGIFTFLLHGRRLNEVLSLTWDHIDFENKQYFIPPKINKAKKLMSYQMTDI 190

Query: 245 L----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292
           L                +  +   +             FK     A +NK    H +R  
Sbjct: 191 LEDILLRQKIINDVECPRSEYVFPSSVTCQKIKDIRKQFKKLLQYANINKKMRIHDIRHL 250

Query: 293 SATISADA-GATAHELMATYGWKTVDQAETYT--KGADRIRLG 332
            A+ + ++ G +  E+  T G  +++  + Y   +     R+ 
Sbjct: 251 VASYAINSLGLSVEEVSYTLGHTSIEITQRYINPRAEISKRVA 293


>gi|161613589|ref|YP_001587554.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362953|gb|ABX66721.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 359

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 103/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP ++T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRYLT-YRKASKSFFWR-NPVTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       +L+VN+     +    +  K  +    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMEEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 VTTRHIAKFLESWITEGKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +     +   LA +  L +G R  D        + +N   +   KTG 
Sbjct: 179 RLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GVN      + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KASGVNFSNNPPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS]
 gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS]
          Length = 300

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 89/284 (31%), Gaps = 20/284 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129
           L  L+  ++ +      A  +  ++       +R     D    IT   ++  +      
Sbjct: 8   LADLLPSWQLALRSEGKAPGTIKTYTDGVAAFLRWCAATDTPPAITKPAVQGFIGDLLDG 67

Query: 130 PS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +A+     +R   +W   +  +  +P + ++RP +  + +   + + ++      
Sbjct: 68  GAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKVVPALSDDQLRALLDAC 127

Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG 240
                +  +       +  +G+R ++     V  +        ++  K      V     
Sbjct: 128 RGKTLKHRRDEAIVRLMAETGMRAAELLGLTVADVDLTRGLAIVRRGKGSKGRVVPFGPQ 187

Query: 241 FMKLLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKAGV-NKSAHGVR 290
               L              D                      K +A  AG+ N  AH +R
Sbjct: 188 TGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLDGTLKERAAAAGIANFHAHRLR 247

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
             +AT    AG +   LMA  GW T    + YT  +   R  ++
Sbjct: 248 HTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASAAERAAVE 291


>gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
 gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 86/280 (30%), Gaps = 21/280 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVE------ 124
              ++ Y+K+             +E  +       G    + +I         E      
Sbjct: 93  GDFLAYYKKTLRKHDQK------WEFVYLHFCNFVGGKCSFEEIDVDLCNKFREYLLNAK 146

Query: 125 -----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 R  + +SA+ + ++ R   K   R + +  N    +E+ + +       + E++
Sbjct: 147 QLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVVKDYLSVEEL 206

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +      +    + A  F   + LR SD      + + +     K   T T  T     
Sbjct: 207 YRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDI 266

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
             +   A+  IG          + +         K     AG+ K  + H  R+  AT+ 
Sbjct: 267 IPISDEALQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQ 326

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
           A  G     + +    K++   + Y K  D   R      
Sbjct: 327 AATGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366


>gi|331650052|ref|ZP_08351125.1| site-specific recombinase, phage integrase family [Escherichia coli
           M605]
 gi|331040997|gb|EGI13154.1| site-specific recombinase, phage integrase family [Escherichia coli
           M605]
          Length = 365

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 97/343 (28%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINSP 64
            + K     G   Y           I                + +            +S 
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGAQKVMELDLYGIPSSN 64

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGELCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|296272532|ref|YP_003655163.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096706|gb|ADG92656.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 99/349 (28%), Gaps = 38/349 (10%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-------KKP 68
            R  K+   F     +R R     + T     ++        +  +N+         KK 
Sbjct: 5   NRKNKLWITF-YHQSKRHRKSLNLDDTKANRKLAETKLIPEIQYKLNNGEFFENDNVKKV 63

Query: 69  TTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126
            T+       +    +       ++ +    +   I    G+    +I    I +     
Sbjct: 64  PTVDEFFQVSFEIHKNHRRF--LTQKNHLYVYKHNIKPYLGNKKLDEIKPSQIATWQNKL 121

Query: 127 KHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             T S+         + V+F  A+  E +  NP   +++P               + FK 
Sbjct: 122 LETLSTKSLSMARAVLNVIFNDAIADEIILRNPLSVIKKPHNVPT-REIKPFSQDEIFKL 180

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             +   + R  F    ++G+R  +        +      IK +++               
Sbjct: 181 LDNVNEKVRCYFAIGFFTGMRTGEILALKWSDIDYENGIIKVRRSKRQGIESEPKTKASI 240

Query: 233 ----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKS- 285
               I   L       L       +  F +N ++  N     F+ ++K    K  +    
Sbjct: 241 RDVDILDILIPYLKNHLKFKIPQSDYLFTSNFQKPYNDCMGIFARYWKPLFEKLDIQYRN 300

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA----ETYTKGADRIR 330
            + +R   A++    G     +    G  T          Y    ++ R
Sbjct: 301 PYQMRHTFASMMISNGEDILWVSNMLGHTTSAMTLTKYAKYIVNKEKKR 349


>gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 301

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 88/285 (30%), Gaps = 36/285 (12%)

Query: 89  VNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
             +  S+ +     +       G++   +     I+  +   KH     P++  +++ ++
Sbjct: 19  EKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAAL 78

Query: 141 RVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           +V F + +    +  NP   ++             +  TKE+  +F S+           
Sbjct: 79  KVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKRL 138

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKTGTIITVE 236
           +     + +LYSGLR ++     +  +                N F+           + 
Sbjct: 139 RNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNLR 198

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
               + K L             +++                A  A ++  + H  R    
Sbjct: 199 KWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSFC 258

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A+AG     +      +++     Y + +   +  I+  R++
Sbjct: 259 KNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IEALRKV 301


>gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 409

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 79/258 (30%), Gaps = 22/258 (8%)

Query: 91  SRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140
           +   +ES    +           D    ++  + +R+        +    ++ I+++  +
Sbjct: 135 TVRRYESCRRYLAELIRQRYGKEDLPLTEVNGELVRAFAFYLKTEKGCQQNTVIRYMKCL 194

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197
           + +   A   +++A +P L +     K       T +++Q          +    R  F 
Sbjct: 195 KKITNLACANDWMAKDPFLGIRF-HEKEVVREFLTMDELQTIYHKEFPLERLTLVRDVFI 253

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLAMTPIGK 252
           F  ++GL   D  +   +H+  +       +     T  + +        ++L       
Sbjct: 254 FAAFTGLAFIDVQQLAPEHIVRDNNGNLWIRKPRQKTKNMCNIPLLDIPQEILRKYADHP 313

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SADAGATAHELMA 309
                          + + + K  A    + K  + H  R   AT      G +   +  
Sbjct: 314 TCRKKGVLLPVPCNQKMNSYLKEIADICMIRKNLTTHCARHSYATSVCLVNGVSLENVAK 373

Query: 310 TYGWKTVDQAETYTKGAD 327
             G   +   + Y +  D
Sbjct: 374 MLGHSNIKMTQHYARVLD 391


>gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12]
 gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12]
 gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12]
          Length = 334

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 88  AVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++  ++   F  ++R                D D + I    +    E R ++  S  
Sbjct: 23  SRHTIAAYACAFTLLLRFVTGRVKRTPSELFIEDLDIQTI-RAFLEHIEEGRANSVRSRN 81

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWS 187
             L +++  F++   ++   +   + +     K    +       ++ +           
Sbjct: 82  ARLAAIKSFFRFVEHRQPACLEQAMMIRAMPTKRTDAKLIDYLTKEEVRALLAAPNRHTP 141

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGF 241
            G + R        +GLR S+     +    +  FS                  E     
Sbjct: 142 GGLRDRAMLHLTYAAGLRASELLAVRMDDFPDGSFSNVRILGKGRRERVLPLWKETQCAI 201

Query: 242 MKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKF 292
              LA+ P         N D ++M    F+   +     A            + H +R  
Sbjct: 202 RAWLAVRPGRVGPELFLNRDGRRMTRDGFAYRLRQHVATAERSTPSIAAKQVTPHVLRHS 261

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            A  +  A     ++    G  ++   E Y +     +L +
Sbjct: 262 CAMHTLQATGDIRKVALWLGHASIQTTEMYLRADPTEKLAL 302


>gi|17488529|ref|NP_511007.1| integrase [Listeria phage 2389]
 gi|254932881|ref|ZP_05266240.1| integrase [Listeria monocytogenes HPB2262]
 gi|17402434|emb|CAC85582.1| integrase [Listeria phage PSA]
 gi|293584435|gb|EFF96467.1| integrase [Listeria monocytogenes HPB2262]
          Length = 384

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 93/347 (26%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  +GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLANGKYCVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQVQHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K   + + K+   G  + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  NFKEFYTLFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +      +     +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                 S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELAKFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAK 276
                + + +   + L         +   +               + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTAQYLHSYLNWHTDYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CSTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 415

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 94/266 (35%), Gaps = 19/266 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 144 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 203

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 204 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 262

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 263 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 322

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 323 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 382

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
              G     + +  G K++   + Y 
Sbjct: 383 LSNGVPIETVSSMLGHKSIKTTQIYA 408


>gi|254931487|ref|ZP_05264846.1| transposase B [Listeria monocytogenes HPB2262]
 gi|293583039|gb|EFF95071.1| transposase B [Listeria monocytogenes HPB2262]
          Length = 637

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 74/291 (25%), Gaps = 34/291 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
            K L+  Y K     + + +  +   S   +          G     ++T   +      
Sbjct: 221 FKELVKRYCK-LMLNTRSFSHVVDTASRLKEFFNFINKNCKGIRRIHQLTRNEVEQYFNY 279

Query: 126 RKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
                   S+    ++++ V F    R ++            + PK      R   +  +
Sbjct: 280 INLKGLKSSTVTGRISTLDVFFTTIQRYDWKDTPSKILIFQEDYPKVPKALPRYIDEHIL 339

Query: 180 QQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTII 233
           +Q      +          +L   G+R S+ C      +      +        K     
Sbjct: 340 EQLNGKLDKLEPYIATMIMVLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEH 399

Query: 234 TVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
            + +      L+ +                F   D   +    F +     A +  +   
Sbjct: 400 IIPISKEIAALILVQEQRVADELDDGCVYVFPRKDGSPLKQDTFRVKLNELAYEEKITDS 459

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   AH  R    T   + G   H +    G ++ +    Y    D 
Sbjct: 460 KGEIFRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDE 510


>gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 406

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 21/269 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSS 132
            +      +   + + +E     +           D     I  + I +     K   + 
Sbjct: 123 YRELIGKDVVKATVLRYERTVRYLEEFLKKEYQLNDIPLYNINHEFISNFEFFIKTEKNC 182

Query: 133 AIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A      +L +++ +   A+  +++  NP   +   + ++      ++E++        +
Sbjct: 183 AQNATVKYLKNLKKIIILALTNKWMTDNPFSGIRFKQTQSN-REFLSEEELHIIMEKKFK 241

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GF 241
             +    R  F F   SGL  +D      +H+          +     T  +        
Sbjct: 242 IPRLEIVRDIFVFCCLSGLAFTDIKHLRPEHITKGPNGENWIRKPREKTNNMCHIPLLDI 301

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGV--NKSAHGVRKFSATISA 298
             L+             N    +   Q  + + K  A   G+    + H  R   A I+ 
Sbjct: 302 PALIVEKYKNNPICVQKNMVLPVPCNQLMNSYLKEIADMCGITKKLTTHVGRHTFACIAL 361

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
               +   +    G   +   + Y K  D
Sbjct: 362 ANKVSMETIARMLGHSDIRTTKIYAKVLD 390


>gi|118470300|ref|YP_889987.1| gp41 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118171587|gb|ABK72483.1| gp41 protein [Mycobacterium smegmatis str. MC2 155]
          Length = 404

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/383 (12%), Positives = 93/383 (24%), Gaps = 72/383 (18%)

Query: 6   RLPPFVTKERTRHGKIIYYFR------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           R+P +V       G+  Y  R       G  R+ R  +      +  Y  A+ G   +  
Sbjct: 7   RIPDYVKVIDLDSGR-RYEVRPEVTGADGKRRQKRERFKTLKEAVDHYT-AIAGDRGRGV 64

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
           ++        T++  +  +        +   +  ++ +    I+   G    + IT   +
Sbjct: 65  HVAPSE---LTVEDAVDSWLL---GQRIRPKTMSAYITSLRPIVDHLGKRTVQSITKDDL 118

Query: 120 RSGVESRK-------------------------HTPSSAIQFLTSMRVLFKWAVRQEYVA 154
              V++ +                            SS    L   R +F+  V Q  V 
Sbjct: 119 EQVVQALRAGTSKMGTWNAPTKLTKAAKKVRSPWAASSINPMLARTRSIFEDLVNQGVVV 178

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N    V+ P          T    Q  +      S        L   GLR  +      
Sbjct: 179 RNVAALVK-PLATDTEKTMNTLNAEQVTQLLAVTDSHCYGIAWRLAVLGLRRGEILALRW 237

Query: 215 QHLQNNI------------------------------FSIKTQKTGTIITVELPDGFMKL 244
             +  +                                  +          +    +   
Sbjct: 238 DAVDFDAGTLAISAARLATAGGATTGAPKTKTSVRTLPMPEDLTAALRRVRKRQKEYRLK 297

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
           L           ++           +  ++     AG+     H  R   AT+   +G  
Sbjct: 298 LGSKWTDSGYVVVDEFGVAPYPDTLTAAWRKTLANAGLPHVRLHDARHSCATLMHLSGVP 357

Query: 304 AHELMATYGWKTVD-QAETYTKG 325
              + A  G +       TY   
Sbjct: 358 TVVIAAWLGHQDPGFTLRTYAHS 380


>gi|320648597|gb|EFX17252.1| putative integrase [Escherichia coli O157:H- str. H 2687]
          Length = 409

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 106/362 (29%), Gaps = 43/362 (11%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHEMNYTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRS 121
            KP T+   ++ + +S    +     R+ +    +   + +I+  G     K   +H  +
Sbjct: 104 LKPVTVGDALTYWLESYAKEN-----RVDYDPLKKRLNNHVIQHIGPMPLDKCELRHWLA 158

Query: 122 GVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPW 174
             +      P SA   L + +   K+  ++ Y   N    +      ++P      +   
Sbjct: 159 CFDRVAKKAPVSAGFLLQTCKQALKFCRKRRYAISNVLDDMSVADVGKKPDISERVLSNK 218

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 219 ELGELLQALDKKIFSPYYVALIHLLIVFGCRTVELRLSEIGEWDFTEMLWTVPKEHSKTK 278

Query: 235 VELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAKATKAGVNKSAHG 288
           V +     + +            +        KQ+ + +Q+      +      + S H 
Sbjct: 279 VAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLVHRRLKH--PHWSLHD 336

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDS 345
           +R+   T+  D G   H +    G +       Y      D  R  +     R+  +  +
Sbjct: 337 IRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYIDAKRNALDMWVERLEILAGT 396

Query: 346 DD 347
            +
Sbjct: 397 HE 398


>gi|319761944|ref|YP_004125881.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC]
 gi|317116505|gb|ADU98993.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC]
          Length = 359

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 97/339 (28%), Gaps = 44/339 (12%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +HG   Y  R G   R+             Y              N P+    T+ + + 
Sbjct: 21  KHGAFYYRHRDGRWERVGTDVKVAKERAALY--------------NDPQGVYGTVAYWLD 66

Query: 77  EYRKSAHWG----SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130
           ++           +L+  +   +      +    G      I  +H+++ ++  ++   P
Sbjct: 67  QFIVDCTARVAAGTLSARTLADYTENIVPLKAYFGAMLPEHIEPQHVQAYLDIGAKAGRP 126

Query: 131 SSAIQFLTSMRVLFKWAVR--QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             A +    +     W +R  +  + +NPC+     K   E  R       +  + + + 
Sbjct: 127 VRANREKACLSSCLSWLMRTGRTTLKVNPCMQASGTKGNPESKRERYVTHAEYIEVYEAA 186

Query: 189 GSQPRLAFEFLLYS---------GLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL 237
           G+Q RL  E    +         G   +   R       + + I      +    +T  L
Sbjct: 187 GTQVRLLMELTYRTLQRPESDLLGWTPAVLARDPHSGARVLSFIQGKTGMRVKIALTERL 246

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------KAKATKAGVNK----SA 286
                + +   P+  +    N   +    +  +                 G+ K      
Sbjct: 247 ESLIHRAMGKVPVISQPLVHNRKGEGYTYSGITAMLTAAIRKVNKAREAKGLPKLESFGF 306

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             ++   AT    AG    ++    G       E Y K 
Sbjct: 307 RDLKGKGATDMWLAGHPIEQIQLLCGHSDKATTEKYIKA 345


>gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 318

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 73/270 (27%), Gaps = 30/270 (11%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
             +R ++++           +G  ++R +   H+ +     E R  + ++  + L ++  
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEEFRVVNRAHVLAWRAQLERRALSGATIRRKLAALAS 97

Query: 143 LFKWAVRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195
           LF + +    +        ++    +           +  ++      +    G + R  
Sbjct: 98  LFDYLLDNNALAGGNPVHGVARPPVETNEGKTPALGDDQAKRLLDAPDDESLQGLRDRAI 157

Query: 196 FEFLLYSGLRC-----------SDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGF 241
              LLY GLR             +        +      I+                   
Sbjct: 158 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVCLVRD 217

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298
                       +         +            A+ A ++      HG+R  +AT + 
Sbjct: 218 GDRAQTPGALFCSLRGKTSGTGITGKGVYGVVSKWASAALIHVDGLGVHGLRATAATNAL 277

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
           +  A   ++    G   +     Y +   R
Sbjct: 278 EHDADIAKVQMWLGHANISTTRLYDRRGQR 307


>gi|254473350|ref|ZP_05086747.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
 gi|211957466|gb|EEA92669.1| phage integrase family protein, putative [Pseudovibrio sp. JE062]
          Length = 335

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 17/303 (5%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            A   +   ++ +        TL  L   Y K    G ++ N+   +++ +    +    
Sbjct: 24  EAREKARKMKKSMRDGLVHIETLDELAQIYFKRRE-GEVSENTLKKYKADWKNKFQDWHK 82

Query: 109 FDYRKIT--TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +   +T     ++ G+ + KH P +A     + +V+   ++ Q  + ++         R
Sbjct: 83  INPAALTVDRCRVKFGMLTEKHGPIAANSAAITSQVIINRSISQGLLPLSYANPWLHVAR 142

Query: 167 KTEGIRPWTK-----EDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHL 217
                R             +       G +  +     L     +G R  ++      +L
Sbjct: 143 NPRKPRTRFMSSEELNRYWEALEEVQAGGRHWIMGVHALRYLLMTGRRKEEALNLRWDYL 202

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWF 273
              + S+         T  L    +  L   P  K   ++     K    +N        
Sbjct: 203 DLELGSVSQPTKTGEKTFRLAQEVVDHLDSVPRVKGCDYVFASFGKGNTAVNEHTLYGVH 262

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                +A + +   H +R+   +    +G    ++    G   +     +    D  RL 
Sbjct: 263 SDVCKRADISDLQVHDLRQTEGSHLRLSGVDLADIADILGHADLTTTRRHYAHLDSARLR 322

Query: 333 IKN 335
            K 
Sbjct: 323 DKA 325


>gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
 gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 72/257 (28%), Gaps = 17/257 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
              +  +   + +    +           D    ++T   IR      ++    A   + 
Sbjct: 127 KDRSKRTYQKYLTVRKYVAEFITRHYKRTDMAMNELTEDFIRDYCLYLRNEVGLAQSSVW 186

Query: 139 S----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191
                ++ +   A     +  NP   +       +     T+ ++Q   +   +      
Sbjct: 187 IYSIPLKHIVTTAHYNGKIPRNPFA-MYHVDPDHKERGFLTENEIQALSAIKLDNPNFAL 245

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPI 250
            R  F F  ++G+  +D       ++     +           V      M + + +   
Sbjct: 246 ARDLFLFGCWTGISFTDIKNLTTDNIVEMNGTPWIVSKRQKTGVPFQIKLMDIPMQIIRR 305

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308
            +            +    +   KA A K G+ K  S H  R   A ++ + G     + 
Sbjct: 306 YEPFRRDKRLFNIGSLDMVNKRIKAVAKKCGIEKPISFHLSRHSFAVLALNYGMPIESVS 365

Query: 309 ATYGWKTVDQAETYTKG 325
              G   +   + Y + 
Sbjct: 366 KILGHTNITTTQIYARA 382


>gi|87198280|ref|YP_495537.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
 gi|87133961|gb|ABD24703.1| phage integrase [Novosphingobium aromaticivorans DSM 12444]
          Length = 430

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/376 (13%), Positives = 105/376 (27%), Gaps = 53/376 (14%)

Query: 14  ERTRHGKIIY--YFRKGHGRR---IRLPYPHESTF--------IPAYMSALTGSTPKREY 60
                GK+ +   +R G G R   +R P   ++                A          
Sbjct: 34  RVYPSGKLSWIAKYRVGGGGRNAPVRCPSLGDARKVSAKDARAAAKRELAAAQLGGDPMA 93

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSL--------AVNSRI-SFESYFDQIIRKSGDFDY 111
           +   ++   T++ LIS Y K   +              ++  +     + ++   G    
Sbjct: 94  VIKAQRCEMTVEALISLYEKEGCFVQRGIRIGVPMKPLTKKYTLSRLRNHVVPLLGKKRI 153

Query: 112 RKITTKHIRSGVESRKHTPSS-------------------AIQFLTSMRVLFKWAVRQEY 152
            +++++ I S   +     +S                   A + +  +  +F +A+R+  
Sbjct: 154 SEVSSQDIESLGRAITIGKTSKDEKVGVRNRVIVKGGEGAARKVIRDLSAVFSFAMRRGL 213

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRC 206
           V  NP       K     +R  + +++++               +          +G R 
Sbjct: 214 VKANPVTLASVRKTDNVRVRHLSMDELKRLGEALDELEKAGVNPKAVNIARLWALTGCRR 273

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
            +        +      +  Q T T  +V    G   +L        T            
Sbjct: 274 DEIAGLQWSEVDFETGRLVLQDTKTGRSVRPLGGAAAILLAKLREGATADAVFVFPAERG 333

Query: 267 TQF----SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             F       +     KA +   + H +R    ++ A AG     + A  G         
Sbjct: 334 EGFFQGTKRVWAQAILKAKLPGVTPHILRHTVGSLGASAGEGMLLVGAVLGHSNARSTLQ 393

Query: 322 YTKGA-DRIRLGIKNS 336
           Y   A D  RL     
Sbjct: 394 YMHVASDPARLAADRL 409


>gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 354

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 89/267 (33%), Gaps = 28/267 (10%)

Query: 102 IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE------YV 153
            +     +  ++I  + I   + S     + +S   +  ++   F +  +Q       ++
Sbjct: 86  YLNFYKLYSLKQIDEELIVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHI 145

Query: 154 AINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLR 205
                 +          +     ++E++++F              + +L  + ++++G+R
Sbjct: 146 FDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENVDFRSNTIRNKLIIKIIIFTGIR 205

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-------- 257
            S++    +  +         +         +     +L+          ++        
Sbjct: 206 VSEAINIKMGDISEENDLYIIRIRAKGNKYRIVMIKKELIYDLLKNVSINYMSKDALLFV 265

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
           N     +  +  S   +    +AG+ K    AH +R   AT+          +    G  
Sbjct: 266 NKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHA 325

Query: 315 TVDQAETYTK-GADRIRLGIKNSRRIS 340
           +++ +  YT    D+++L  + ++ +S
Sbjct: 326 SLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4]
 gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei
           5_1_36/D4]
          Length = 419

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 88/284 (30%), Gaps = 22/284 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKS------GDFDYRKITTK 117
              TL  L+ E+ +          +R S+  Y      I           D   R +T +
Sbjct: 91  VKETLLALMDEHNEEYAKRVGIDRTRHSYIRYLTTRKHIHNFMKYKYDMEDMPLRSLTMR 150

Query: 118 HIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            +           K   S+   +L  +  + + A+++  +  +P    +  ++     R 
Sbjct: 151 FMTDFTFYLSTVLKLKVSAYNDYLILLHKMTRLALKKHILKRDPFAGHK-IEKVLVNHRY 209

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T E  ++  +      +    R  F F  ++G+  +D       ++       K     
Sbjct: 210 LTGEQFEKLLNAKLPTYRLCHTRDLFVFSTFTGIGRADLANLTEDNIITKKDGSKWIHIA 269

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGV--NKSA 286
              T       +  + +  I K      + K          +   K  A + G+  + + 
Sbjct: 270 RQKTKAECHIKLLDIPLRIIEKYRGEGKDGKLFYVPITGNLNRSLKMIAEQCGLECHLTY 329

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  R   AT+   + G     +    G  ++   + Y +  ++ 
Sbjct: 330 YQSRHSFATLICLNNGVPIESISKMMGHSSIRTTQIYAEITNQK 373


>gi|317503413|ref|ZP_07961455.1| integrase [Prevotella salivae DSM 15606]
 gi|315665465|gb|EFV05090.1| integrase [Prevotella salivae DSM 15606]
          Length = 304

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 81/274 (29%), Gaps = 16/274 (5%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPSSAIQ--- 135
           S     ++  +++++++     +      D     IT   I    +  +    SA     
Sbjct: 30  SIISKGVSKATQLNYQTAVCSFLMFKAKDDVLFSTITQAEIVRYQQWLQQRAISANTTTC 89

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSFWSEGS 190
           +L S+R L+  AV++  V         + +               +      K    +  
Sbjct: 90  YLRSLRALYNKAVKRRLVKDIKPFEKVQTRNNKVVKVALKPIQLQQLRELHLKDKSFQAF 149

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              L        G+   D        +++     + QKT   + V+L      ++     
Sbjct: 150 ARDLFLFSCYAMGMPPIDMVHLKWTQIKHGFIHYQRQKTHRKVIVKLEPCMQAIIDRWGK 209

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKAT-----KAGVNKSAHGVRKFSATISADAGATAH 305
               +           +    + +A        +     S++  R   A+++ +      
Sbjct: 210 PDNKYIFPILPCMKYDSFLRQYNRALHALGEEIRLDFPLSSYVARHTWASLAYENNVALS 269

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +    G  +      Y    D +++  + +R++
Sbjct: 270 IISQALGHSSSKTTLNYIHEID-LKMVAEANRKV 302


>gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
 gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii
           B14]
          Length = 216

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 9/200 (4%)

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +   F W   + Y+  +P   + + K        +T E ++Q +       +
Sbjct: 2   TVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHC-SNIR 60

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPI 250
                + L  +G+R  +  R     +       I T K      V         L     
Sbjct: 61  DLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKYVN 120

Query: 251 GKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
            +           ++           I  +    +  + K   H  R+  AT++ D G  
Sbjct: 121 SRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKGMP 180

Query: 304 AHELMATYGWKTVDQAETYT 323
             ++    G +++D    Y 
Sbjct: 181 IEQVQHLLGHQSLDTTLQYA 200


>gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus
           flavefaciens FD-1]
          Length = 357

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 101/349 (28%), Gaps = 35/349 (10%)

Query: 17  RHGKIIYYFRKGH--GRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRKKPTT--L 71
           R G+ IY  R G   GR I     +    +   Y +       K    +   K   T   
Sbjct: 2   RRGENIYKRRDGRWEGRYIASRDENGKACYRSVYAATYVEVRDKLRKCSQELKNGNTSLF 61

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129
           + +   +          +++   + S + + ++ +       ++ +K I   +  +   +
Sbjct: 62  ENIGENWLSGVKLR-CKLSTYNKYFSTYQNHLLPEFRGLRISEMNSKRIEGFISGKTDLS 120

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +    L+ ++ + K+A    +   N    +   +   E      +E ++      S  
Sbjct: 121 DKTRTDILSMLKQIMKFAEHSGFYVDNTISDLSVRRSVNEIRVLTLQEQIRLENYLLSCD 180

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------- 240
           S         LY+GLR  + C      +  +   I    T   + ++             
Sbjct: 181 SLITTGIYLTLYTGLRIGELCALKRSDIDLDSGMIHISGTMQRLRIDTMISRTQVMITEP 240

Query: 241 -----------FMKLLAMTPIGKETFFINND-----KQKMNATQFSIWFKAKATKAGVN- 283
                         +L +  +       +       +  +     S  FK       +  
Sbjct: 241 KSKCSIRDIPIPKAILNVCRMYYYNMPDHCFLLTGDETYIEPRLLSYHFKKCTKACDLEN 300

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
              H +R   AT   + G     L    G   V+     Y   +  +++
Sbjct: 301 IHYHTLRHTFATRCIERGVDVKSLSEILGHYDVNVTLNRYVHPSTELKI 349


>gi|229592463|ref|YP_002874582.1| putative integrase [Pseudomonas fluorescens SBW25]
 gi|229364329|emb|CAY52081.1| putative integrase [Pseudomonas fluorescens SBW25]
          Length = 445

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/371 (11%), Positives = 89/371 (23%), Gaps = 34/371 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGH----------GRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
            +       G   +  R             G    +               ++      E
Sbjct: 65  GLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAADLRKVVSSGADPLE 124

Query: 60  YINSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113
              S +         T +     + K+     LA ++     +Y D+ I+   GD    +
Sbjct: 125 QKRSAKAAIDAAKARTFRAAAEAWLKAKEEKGLATSTLHKIRTYLDKDILPALGDKPLDE 184

Query: 114 ITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT         S +     + A +  T +  +F  A+       +P   +     +    
Sbjct: 185 ITRTDCADLQASLEARDAHNVAEKCRTWINQIFGRAIGLGLTENDPGSRLRDIAAQAPKT 244

Query: 172 RPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224
           +           +  Q           R A    +++  R      A  +          
Sbjct: 245 QQHPHLLEPELAEFLQALKNTPSRLTARTAAWLCIWTASRPGMVRLAEWKEFDLEKAIWT 304

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKA 280
                  +    +     + +            +          N T             
Sbjct: 305 TPAAKMKMRRDFVCPLPHQAVTALRDLHCLTGRSRWLFPGVGAKNPTISENTINKVFATI 364

Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKN 335
           G       HG R  ++T+  + G     + A    K    +  Y K      R+++    
Sbjct: 365 GYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEGISGVYNKAQYFEQRVKMMQWY 424

Query: 336 SRRISSVVDSD 346
           +  + S+   +
Sbjct: 425 ADHLDSLEAGN 435


>gi|195940859|ref|ZP_03086241.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4024]
          Length = 374

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 104/301 (34%), Gaps = 26/301 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  T+   + +Y K+        + +  +    + I R    +     ITT  I 
Sbjct: 3   QKIKIRKMTISRALDKYVKTVSIHK-KGHLQEFYR--VNVIKRHPIAERYMDDITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF    V      +NP   V +PK  + 
Sbjct: 60  NYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSG 119

Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKT 226
             R  T  + ++   ++ E +Q   + F   L + +R  +      +H+        + T
Sbjct: 120 RDRRLTSGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPT 179

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285
            K G    V L       L M P        +       ++ F   ++    +  +    
Sbjct: 180 TKNGAPRDVPLSRKARNYLQMLPTQLNGNIFSY-----TSSGFKSAWRTALQELKIENLH 234

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            H +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 235 FHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 294

Query: 344 D 344
            
Sbjct: 295 A 295


>gi|167740628|ref|ZP_02413402.1| shufflon-specific recombinase [Burkholderia pseudomallei 14]
          Length = 363

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 95/351 (27%), Gaps = 45/351 (12%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           TR G + +  R +  G  +++   +      A+   +     +  +++    + TTL   
Sbjct: 5   TRRGDLQWQARVRRKGYPVQIKTFNTRAEAEAWARLIESEIDRGVFVSRAEAESTTLAEA 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KH 128
           +  Y +             S    +              + +  I    +          
Sbjct: 65  LDRYDREIAASKKGYVQEASLLRMWK--STVIASRPMASVRSADIAKLRDDWLKQTNPPL 122

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            P+S ++ L  +  +F  A ++  +        L  + P       R    E   +    
Sbjct: 123 KPASVVRRLAVLSHVFSIARKEWGMESLLNPLELVRKPPANNARTRRIAAPETDTESARQ 182

Query: 186 WSEGSQPR-----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTI 232
              G   R                 + + +R  +      +H+        +   K G+ 
Sbjct: 183 TEAGELERVVAASGSDLLPAIIWLAVETAMRRGEIVDLQWEHVDLRRRVAHLPETKNGSS 242

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------- 281
             V L    +++L       +T   ++    + +   +  F+    +A            
Sbjct: 243 RDVPLSTRAVEVLKERRKAAKTRSGDDRVFPIRSDAVTRAFERAVERARSIYVTECKDAG 302

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                    +   H +R  + +  A      H+L    G +       Y  
Sbjct: 303 TVASKSYLEDLRFHDLRHEATSRLASI-FPVHDLAKITGHRDPRMLMRYYH 352


>gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2]
 gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2]
          Length = 326

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 80/305 (26%), Gaps = 50/305 (16%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKH--- 128
           L+ E       G  ++++  S+  +  + +   G      +      I   +        
Sbjct: 8   LLDEVHAVMRLGHYSIHTERSYCDWIKRFVHFHGMKSRDDLKEGEPKIEQFLTHLAVVGN 67

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT------------------- 168
            +PS+  Q + ++  L+K  + Q        +   + +                      
Sbjct: 68  VSPSTQNQAMNALVFLYKKVLEQPLDGRINAIRARKRQNIPVVLTKGEVVSVISLMKGTP 127

Query: 169 ------------------EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-----LYSGLR 205
                                      D++Q      +G++ R+    +     L S L 
Sbjct: 128 NLVVKLLYGSGLRAMEALRLRVHDIDYDLRQITVRSGKGNKDRVTPFPVSLAPLLQSHLT 187

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
              +              +                +  +     + ++       +  ++
Sbjct: 188 RVKAIHEKDITDGYGAVYLPYALERKYPNAAKEWQWQYIFPSGSLSRDPESGRTRRHHID 247

Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  +   KA A +AG++K    H  R   AT   + G     +    G   +     YT
Sbjct: 248 PSVINKAIKAAAKRAGIHKRISSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYT 307

Query: 324 KGADR 328
               +
Sbjct: 308 HVLGQ 312


>gi|253687244|ref|YP_003016434.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753822|gb|ACT11898.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 374

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 99/298 (33%), Gaps = 27/298 (9%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
             R K   L   + +Y  +          +  +  +   +   +  + +  +I++  I  
Sbjct: 2   KKRIKKILLSKALDKYFSTVSRHKRGQL-QEFYRINVIKR--SRLANRNMDEISSIDIAE 58

Query: 122 GVE-------SRKHTPSSAIQF---LTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +       +R   P SA      L  +  L+    V     +INP  +V +P   +  
Sbjct: 59  YRDNRLSEFNARTQKPISANTVRLELALLSALYNLAKVEWGTCSINPVENVRKPTVSSGR 118

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ 227
            R  T ++ +Q  + F  +  +    F+  L +G+R  +      ++  L+  +  +   
Sbjct: 119 TRRLTTQEERQLTRYFKDKNPELLAIFQIALETGMRQGEILSLRWEYTDLRLGVAHLPLT 178

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286
           K GT   V L     ++L                    ++ F   ++       ++    
Sbjct: 179 KNGTSRDVPLSSKARQILYGLGERPHHENGYIFSY--TSSGFKSAWRVALKALAIDDLHF 236

Query: 287 HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
           H +R  + +   + G     E+ A  G K+++  + YT              ++ +  
Sbjct: 237 HDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRYTHL-----RAAHLVNKLDAHK 289


>gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298
           +  +        +       +  ++    S   K     AG+    SAH +R   AT   
Sbjct: 76  WKYVFPAMDRSVDPRDGRERRHHVDDGALSRALKKACKLAGIMKPVSAHTLRHSFATHLI 135

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326
           ++G     +    G K V   + YT   
Sbjct: 136 ESGYDIRTVQELLGHKDVATTQIYTHVL 163


>gi|255284416|ref|ZP_05348971.1| transposase [Bryantella formatexigens DSM 14469]
 gi|255265041|gb|EET58246.1| transposase [Bryantella formatexigens DSM 14469]
          Length = 424

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/376 (14%), Positives = 112/376 (29%), Gaps = 53/376 (14%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK  + +        +LP   +       +    G     +    P  K  T+  L+  
Sbjct: 35  NGKPHFVYSWRLEPTDKLPSGKKPCLSLRELEKQIGYDLDSQL--DPVGKNITVTELVER 92

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKI---TTKHIRSGVESRKHTPSSA 133
           Y ++     +  ++R  + +    + ++  G+    ++     K     ++S     SS 
Sbjct: 93  YIRTK--TGVRDSTRAGYRTVQRTLEKESFGEKKISQVKVSDAKLFLIKLQSEGKGYSSI 150

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 +R  F+ AV  + +  NP            +      TKE M++F  F  + + 
Sbjct: 151 HSIRGVLRPAFQMAVDDDVLHKNPFGFELATVIVNDSVTREAITKEQMRKFLKFIHDDNV 210

Query: 192 PRLAFEFLL---YSGLRCSDSCRA-------GVQHLQNNIFSIKTQKTGTIITVELPDGF 241
               +E +    ++G+R S+ C           + +  +   ++T +   +I     +  
Sbjct: 211 YCKYYEVVYILFHTGMRISEFCGLTLKDIDLENRIINIDHQLLRTSEMKYVIEATKTNAG 270

Query: 242 MKLLAMTPIGKETFFI---------------------------NNDKQKMNATQFSIWFK 274
            + L MT      F                                       +F+   K
Sbjct: 271 TRKLPMTDDVFRCFQAIIEDREAPRLEKIVDGHTGFLFTDKDGMPLVAMHWEHRFNHMVK 330

Query: 275 AK---ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
                      N + H  R    +  A +G     L    G   +     TYT     + 
Sbjct: 331 RYNDICRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIGVTLNTYTHLG--LE 388

Query: 331 LGIKNSRRISSVVDSD 346
                 +R+  + D+ 
Sbjct: 389 DAADELKRMEELADAR 404


>gi|194466794|ref|ZP_03072781.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453830|gb|EDX42727.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 374

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 84/342 (24%), Gaps = 43/342 (12%)

Query: 19  GKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           G      R     G+R         T   A           +       KK  +     +
Sbjct: 10  GSWQARVRWTDTNGKRHSKSKNGFKTKALARQ--WGNDLETKVNQGIDIKKEISFLNYYN 67

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAI 134
           ++  +     L+  +   +    + + +     + + IT    +  + S    H  SS  
Sbjct: 68  QWVITYKEPKLSSKTLNRYTVVGNILQKHFKQTNIKNITRTMYQEFINSYGSNHAISSVK 127

Query: 135 QFLTSMRVLFK-------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +  + +R   K                       +  + +   +    K   Q       
Sbjct: 128 KLNSIIRSCVKSAILDDYLTKDFTQRVTLTADKSKTLEVQYPNVNEIKKILNQTINGMTD 187

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232
                R      +Y+G+R  +        +     +IK  K                   
Sbjct: 188 RRYTSRYMIITAIYTGMRKEEIQALTWNDIDFLHDTIKIDKAWRETKDKGESNSHFITHR 247

Query: 233 ----------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKA 280
                       +++    +++L+   I   +  +  D+     T    +   +    + 
Sbjct: 248 FKPTKNKASIRQIKVNHKLIRILSRLKINATSNLVFMDQFGTIPTSGPLNDKLREIMAEL 307

Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            + K     H +R     +    G   + +    G   +   
Sbjct: 308 NIKKENFHFHSLRHSHVALLLANGIDTYAISRRLGHNDITTT 349


>gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061]
 gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 333

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123
              TL+  +  +            +R  + S      +   + G    ++++   + S  
Sbjct: 2   ASLTLRQHMQHFLDHLDALRYTRETRAHYRSNLREFVRWCDERGITTAQQVSFPQLESWQ 61

Query: 124 ESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--- 171
           +               S+ I+ LTS+R LF+W V++ ++  NP   +  P+R+       
Sbjct: 62  QHMVAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRERRLPWGM 121

Query: 172 --RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218
              P T+  +    S      + R   E L  SG+R S+  R  +  L            
Sbjct: 122 LNEPETRRVLAMTGSDNPLSVRDRAILETLWSSGIRRSELKRLQLSELDLAGGMLFVRQG 181

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                 +          V+     ++   +        F++     +     +   +   
Sbjct: 182 KGRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQQGSALAEGTLTQIVRNAL 241

Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            +A ++K    H  R   AT     GA    + A  G  +++  + YT+ A
Sbjct: 242 HRADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVA 292


>gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 409

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 80/280 (28%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDMLIKE-KESHIGIDIKEGSMYAYHSTRKRLQEFIQRRYHVSDLAFSQLTESFIYELQA 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  H  S+  +    ++ + + A R+          V   +   +  +   +E + 
Sbjct: 173 FCLGDLGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKTLDQEALD 232

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                +F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKALRFDELEEEMETARDVFLFACYTGAAYCDLIELSKKHLIRDDEDCLWLKFN--RQK 290

Query: 236 ELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL           +            + +    KA   ++ +    + H  R
Sbjct: 291 TGVLCRIKLLPEAVQLIQKMHSDERETLIPYFKYSTYQSCLKALRLRSDISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVIPQK 390


>gi|160897352|ref|YP_001562934.1| integrase family protein [Delftia acidovorans SPH-1]
 gi|160362936|gb|ABX34549.1| integrase family protein [Delftia acidovorans SPH-1]
          Length = 333

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 96/346 (27%), Gaps = 33/346 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIR----LPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           + ++++R   +  + R  +G RIR    LP    S     +    +              
Sbjct: 3   IVRDKSRGTYVFEFDRIVNGGRIRIRKRLPKAWTSAQADEFERKESARIYAAANGVGSED 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV 123
           +  T    I+ Y        L      +      QI             ++    ++   
Sbjct: 63  RLIT--DAIALYVAERAPL-LKQG--KNAAREIHQIHWAFNGKPISALAEVCRAVVQKSG 117

Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           +SR   +  P++    +  +    ++A +          +     +     R +      
Sbjct: 118 KSRYGKEMAPATIRARIRYLVAACRYAWKYHGFGTADPGARVITPQVRNERRVYIDRREM 177

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
              +      + R       YSG+R  +   A V+                         
Sbjct: 178 LKIARKIRNRKVRRVIRIAFYSGMRLGEILSARVEG---------------GRWHLDDTK 222

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299
             +   +    +     +N  +K        +F+  A   G  +   H +R  +A+   +
Sbjct: 223 NGEPRIVPIHPRVWTAAHNTSRKPAKITVQSYFREAARALGHNDLHFHDLRHSAASEMIN 282

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
                + + A  G K    +  Y   A   RL +   ++I     +
Sbjct: 283 NDIDLYTVGAVLGHKDQRSSARYAHLA-VKRLDL-AIKKIGQKTPT 326


>gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +                +  ++ +      K+ A +A +    + H +R   AT 
Sbjct: 74  WLWQFVFPSAIRTCNPDTGERTRFHISNSTVQKALKSAARRARIFKRVTCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++G     +    G K +     YT   
Sbjct: 134 LLESGYDIRTVQELLGHKDLRTTMIYTHVL 163


>gi|289549366|ref|YP_003474354.1| integrase family protein [Thermocrinis albus DSM 14484]
 gi|289182983|gb|ADC90227.1| integrase family protein [Thermocrinis albus DSM 14484]
          Length = 288

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 97/283 (34%), Gaps = 24/283 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPS 131
           ++  +R+S    S +  + I++    +   R +G  + +       H+   ++S   +P+
Sbjct: 3   ILELWRRSLE-RSRSERTVITYSKCLELFARNTGLTEDELLNTEPVHLYQHIDSSSLSPA 61

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAIN----------PCLSVERPKRKTEGIRPWTKEDMQQ 181
           S +  L++++  FK+AVR+ Y++                    +      +  T+E++ +
Sbjct: 62  SVLTHLSALKHFFKFAVRRGYMSREAYTKLEAAIEELRDEIGRRNVRRAPKALTREELSR 121

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                      R+   F LYSG+R S+       +   +   I   +     T    +  
Sbjct: 122 IMESTKNTVYERVYTLF-LYSGIRLSEYKHLKKDNFFMDKSGIYWLRLPAYATKGNKERM 180

Query: 242 MKLLAMTPIGKETFFINNDKQKMNAT--------QFSIWFKAKATKAGVNKSAHGVRKFS 293
             ++  T            +   N             ++    + +  +  S H  R   
Sbjct: 181 APIMGPTKEETYQVTEKLARWLENYEENLVVNAGSLQVYTYRLSHRLNIPFSLHSFRHTY 240

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334
            T   ++G  A  +    G   V    + Y +   +R R  ++
Sbjct: 241 ITNLINSGFPAEVVKEFAGHSHVKTTIDIYYRFSPERARKLVE 283


>gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262]
 gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262]
          Length = 361

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/318 (10%), Positives = 79/318 (24%), Gaps = 64/318 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI------------T 115
           +  + K       A N+  ++  +                D  + ++             
Sbjct: 29  VKRFIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQRGIGLEDLKFEEMSNFVGWLRNPTGD 88

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K I    +  K   +S    L ++    ++  R E           R +     +   +
Sbjct: 89  VKVITLQPKKAKREETSVNAILNAITSFLEYLNRTEDFKAIDMTKEARGRNFKGFLHHIS 148

Query: 176 K----------------------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           K                       +  +         + +L    +   GLR  +     
Sbjct: 149 KGKSYKKNILKLRVKKKLVQVLEHEQVKAIIDACHTKRDKLLIMLMYEGGLRIGEVLSLR 208

Query: 214 VQHLQNNIF--------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF--------- 256
           ++ +               +      +      D   +L+A+        +         
Sbjct: 209 IEDISTWDNLINITPRDHNENGAYIKLRKERTIDVSKELMALYTDYLVHEYGEDLEHDYI 268

Query: 257 -----INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                 +   + +         +    + G+  +AH +R   AT    +G  A  +    
Sbjct: 269 FINLKESYFGKPLKYQSVLDLIRRLGKRTGITFTAHMLRHTHATELIRSGWDAAYVQKRL 328

Query: 312 GWKTVDQA-ETYTKGADR 328
           G   V    +TY   +D+
Sbjct: 329 GHAHVQTTLDTYVHLSDQ 346


>gi|225378538|ref|ZP_03755759.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257437991|ref|ZP_05613746.1| phage integrase [Faecalibacterium prausnitzii A2-165]
 gi|225209641|gb|EEG91995.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM
           16841]
 gi|257199651|gb|EEU97935.1| phage integrase [Faecalibacterium prausnitzii A2-165]
          Length = 386

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 83/371 (22%), Gaps = 69/371 (18%)

Query: 18  HGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            G   Y  R     G+R+ +              A         +  +P     T++   
Sbjct: 3   KGVQYYRTRITDADGKRVAIYGLTREELYDRVEDAQKKIAEVVFHRENP-----TVEEYC 57

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
            ++      G++  N+   +E   ++ I+   G     ++TT  +R  +       S   
Sbjct: 58  EKWLL-MRSGTVRTNTLEGYERMVNRYIVGPIGQMYMDEVTTDDLRLLMVPLSKGSSGMY 116

Query: 135 QFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             L  + + +F  A   + +  NP  ++     K    R    ++             P 
Sbjct: 117 GQLNMLIKNIFNSAEESKVIKENPSKTICARGGKPAKRREALTDEQTAILLDSIRELPPY 176

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------- 246
           +     LY+GLR  +        +  +  +                    LL        
Sbjct: 177 VFVMIGLYAGLRREEILGLKWDCVFLDEKTPYISVRRAWHVEGGAPVVNTLLKTPAAKRD 236

Query: 247 ----------------------------------------MTPIGKETFFINNDKQKMNA 266
                                                      I   +         +N 
Sbjct: 237 VPIPKCLVACLKEAREKSESEYVISNSKGTVLTETQFVRAWKYITVRSTAERCYYTYVNG 296

Query: 267 TQFSIWFK-----------AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
                  K                     + H +R    T     G     +    G + 
Sbjct: 297 QSIKHRIKPRLGEHQPNNPKLVYTMDFKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHEN 356

Query: 316 VDQAE-TYTKG 325
                  Y K 
Sbjct: 357 SKTTMDIYAKV 367


>gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3]
 gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3]
          Length = 385

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 94/340 (27%), Gaps = 49/340 (14%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRK 105
              +          +       +     ++ + +      + +  +  ++ +    +   
Sbjct: 43  RQRSRATCGSDARPVEIVETPESDWDTAVAGFLRHLIAELARSPETVRAYAADLANLRAH 102

Query: 106 SGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           +         D      +   + + +    P+S  +  +  RV   +A R  ++  +   
Sbjct: 103 AERMGCSVLADLDLALLRSWLASMRAAGAAPASLARRASMARVFSSYAARHGFLDTDVAA 162

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------------------SQ 191
            +   +         T    +Q     S                               +
Sbjct: 163 RLVGNRTVRRVPEVLTAAAARQLLENPSPDVSPPGTSQPSGLPDSTADSERVVRRAVELR 222

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250
             L  E L  SG+R S+ C   + H+ ++   ++   K G   +V      +  L     
Sbjct: 223 DALVLELLYGSGIRVSELCGLDLGHIDDDRRLLRVLGKGGKERSVPFGVPAVAALRSWRS 282

Query: 251 GKETFFI----------NNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISA 298
                 +               +++          +  A  A    + HG+R  +AT   
Sbjct: 283 TGRPRLMTARSGRALLLGLRGGRLDPRTVRRILTTRVAAGVAPAGLTPHGLRHSAATHML 342

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337
           + GA    +    G  ++   + YT    +R+R   + + 
Sbjct: 343 EGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAH 382


>gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 414

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 79/290 (27%), Gaps = 29/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS--------GVESRKHTPS 131
           K     S A ++  +       +     D     IT   I           ++ R    +
Sbjct: 116 KECVGKSRAKSTYQNLLYSDKLLTEFVKDKGMMDITISAITEDLFEEYGFYLKKRGLATA 175

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEG 189
           +  ++L  +  L   AV Q  +  NP  + +  K + +    +      +   +    E 
Sbjct: 176 TMNRYLCWLSRLMYHAVSQRIIRCNPFENAKYEKAEQKIRFLQKSEVSKLMALRVPDKEA 235

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTIIT 234
            Q R  F F  ++GL  +D       H+Q      K                        
Sbjct: 236 EQARRLFVFACFTGLAIADMEHLQFGHVQTAADGQKYIRKERQKTKVEFVVPLHPIAETI 295

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
           +         +      KE           + +  S          G+ +    H  R  
Sbjct: 296 INQCKKEQPSMKEMQTVKEKGDDFIFHCACSRSVMSAKLSIVGKACGIRERLSYHMARHT 355

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             T+S  AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 356 FGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNK--ISEDMDRLIRK 403


>gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)]
          Length = 296

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 197 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 256

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 257 ATHLLEVGADIRTVHEQLGHTDVKTTQIYTHVLDR 291


>gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
 gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657]
          Length = 212

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 10/208 (4%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + LTS+  LFK       V        ++    T      T++++++  +   
Sbjct: 1   MKAKSINRKLTSINQLFKSININYGVKCKRMKEQKQ----TFLDDVLTRDEIEKMLNKCG 56

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKL 244
              + +     L  +GLR S+  +  ++ ++     I+ +        +  EL + +++ 
Sbjct: 57  TNIRDKAIIMTLYKTGLRVSELLQLRIRDIRKKSIEIEGKGGKYRYIIVPKELKEIWLQY 116

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
           L +    +          +M+    +   K  A +A + K     H +R       A   
Sbjct: 117 LKVRKPVETDKLFVGTNGEMHRHNINRIIKKYAVQARITKGKAHPHALRHSFCKALAIQN 176

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G + ++    YT+   + 
Sbjct: 177 VGIEVIADLAGHEDLNTTRIYTRQTQKE 204


>gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735]
 gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735]
          Length = 333

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 18/276 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K+ ++    +          +    +  + ++    + R   D  + +I  K I      
Sbjct: 50  KEDSSFLDWME---GEIDKETYTAGTIANHKAALAVLRRFKKDITFTQIDYKCICDFENF 106

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKE 177
            K    +       +   R     A+ +E + + P           +            E
Sbjct: 107 LKTAGYAINTIAKFMKIFRRFVNLAIDEELMTVYPFRKYHIKTENVQKQSLTERELRRIE 166

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
           + +  +   +E  +    F F +YSGLR SD  +   QH++N   +            E+
Sbjct: 167 EKEVKEELTNEERKVIKGFLFSVYSGLRFSDIVQVTKQHIKNIYRNKWVVMRMQKTDHEV 226

Query: 238 PDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                K+            +T      +   NA   +I  K    +  ++K  + H  R 
Sbjct: 227 RIPISKMFGGKAAALVQENKTTTGKLFQLPCNARC-NIVLKRVLKRFNIHKHITFHCARH 285

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT+    G +   +    G +++   + Y+   D
Sbjct: 286 TCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAVKD 321


>gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
 gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 18/244 (7%)

Query: 111 YRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
            R++    +R  V +R       S+  + L  +     +   +                 
Sbjct: 1   MRELKRGDVRRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGLDG 60

Query: 168 TEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            E    W        +       +     R      L +G R ++        +      
Sbjct: 61  GESRVRWISRSEATALILAAGAAARQPHLRNFVRLALSTGCRKNELLALEWHRVDFERSH 120

Query: 224 IK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFK 274
            +      K G    V L  G +  L             ++    +++          F 
Sbjct: 121 FRLECEHTKNGKRRLVPLNSGALLALRDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFV 180

Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLG 332
           A   +AG+     H +R   A+     G + + +    G  ++  AE Y   + D  R  
Sbjct: 181 AACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREA 240

Query: 333 IKNS 336
           ++  
Sbjct: 241 VQKL 244


>gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium]
          Length = 161

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVACHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            AT    AG     +    G   V   + YT 
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161


>gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
 gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1]
          Length = 130

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
              F+N     + +            KA +    S H +R   AT   D GA    +   
Sbjct: 40  HMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQEL 99

Query: 311 YGWKTVDQAETYTKGADRI 329
            G + +   + YT  +   
Sbjct: 100 LGHENLSTTQIYTHVSKER 118


>gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 354

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 97/291 (33%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  ++   ++ +   ++         +  ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +     +KE++++F     
Sbjct: 122 YRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSKEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          +I        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
 gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum
           WAL-14163]
          Length = 289

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 67/256 (26%), Gaps = 11/256 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+E++   H    + N+   +                 K           ++ H P+S  
Sbjct: 17  IAEFQNYLHQEERSRNTITKYIRDLKVFFTFLDGQPMDK-EALLDWKKHLTQTHAPASVN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L S+     W      + + P     +     +      +       +   + ++  L
Sbjct: 76  SMLASVNKFLDWL-ELPGLKVKPLKIQRQIFSNPKKELTAEEYRRLIKAAESRQNNRLSL 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             + +  +G+R S+      +  +        +       + LP    + L      +  
Sbjct: 135 LLQTICSTGIRVSELKFITAESAKTGRAEADCKG--KTRIIFLPPDLCRALRHYCRERGI 192

Query: 255 F----FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
                F   +   ++ +      K     AGV       H +R   A            L
Sbjct: 193 DAGIIFCTKNGCPLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRL 252

Query: 308 MATYGWKTVDQAETYT 323
               G   V     YT
Sbjct: 253 ADLLGHSNVSTTRIYT 268


>gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism]
          Length = 266

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               V    G+  +     + ++ +     +  ++        K    +AG+    S H 
Sbjct: 170 KYRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHT 229

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   AT   + G     +    G   V     YT  
Sbjct: 230 FRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 266


>gi|331680860|ref|ZP_08381500.1| shufflon-specific DNA recombinase [Escherichia coli H299]
 gi|331081848|gb|EGI53006.1| shufflon-specific DNA recombinase [Escherichia coli H299]
          Length = 389

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 92/277 (33%), Gaps = 25/277 (9%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV 123
           + +  +L   + +Y K+        + +  +    + I R    D    +ITT  I    
Sbjct: 6   KIRKMSLSRALDKYLKTVSVHK-KGHLQEFYR--VNVIKRHPMADRYMDEITTIDIAGYR 62

Query: 124 ESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172
           + R          + T ++    L  +  LF    V      +NP   V +PK      R
Sbjct: 63  DQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRDR 122

Query: 173 PWTK-EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKT 229
             T  E+ +  + F  +  Q  + F   L + +R  +      +HL        +   K 
Sbjct: 123 RLTSGEERRISRYFRDKNPQLYVIFHLALETAMRQGEILSLRWEHLDLQHGVAHLPETKN 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
           G+   V L       L + P        +       ++ F   ++       +     H 
Sbjct: 183 GSPRDVPLSRKARNYLQILPQQINGNVFSY-----TSSGFKSAWRTALLDLKIENLHFHD 237

Query: 289 VRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 238 LRHEAISRLFELGTLNVMEIAAISGHRSLNMLKRYTH 274


>gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
 gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella
           buccalis ATCC 35310]
          Length = 418

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 71/274 (25%), Gaps = 20/274 (7%)

Query: 75  ISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE- 124
             EY +          A+ +          +           D    ++    I      
Sbjct: 126 FEEYLRQTKERIGIDRALKTFKLRTYQLSLLREYLQKKYKVSDIPLSQLDKAFIEGFEYY 185

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               RK   SS    L++++ + + AV++  +   P L     +R     R  +++ +Q+
Sbjct: 186 LSIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGYSY-ERPKGEPRSISQDQLQR 244

Query: 182 FKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 E    R+    F F  +SGL  SD      +++      +  +           
Sbjct: 245 IIDLEIEWENYRIVRDLFVFSCFSGLAISDVRNLREENIVLEEGELCIKGKRMKTKTPYR 304

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
              +                                      G+    + H  R   A++
Sbjct: 305 VQVLPPAWAIMERYRGKRAGFVFDVPTNDIIHNGMHYIQRSIGMKSPLTFHMARHTFASL 364

Query: 297 S-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               AG     +    G   +   + Y   +   
Sbjct: 365 ITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSER 398


>gi|27379637|ref|NP_771166.1| site-specific integrase [Bradyrhizobium japonicum USDA 110]
 gi|27352789|dbj|BAC49791.1| intA [Bradyrhizobium japonicum USDA 110]
          Length = 388

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 74/342 (21%), Gaps = 50/342 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  +R    +        A          +             L      + K     +
Sbjct: 24  TGKRKRKWHSFTGTK---RAAQLECARLISETSDGAYVEPSKLALAQFFDRWLKHIKP-N 79

Query: 87  LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQ 135
           ++  +   +E      I+   G     K+    I                   +P +   
Sbjct: 80  VSPRTHERYEQIATKNIVPLLGAKILSKLQPIDISEAYGKALENGRRDGKGGLSPRTVHH 139

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
               +      A R   +  NP   +E+  R     +P    D     + +    + RL 
Sbjct: 140 MHRVLFSALGQAERWRLIPRNPAALLEKRDRPKIERKPVRTIDANSTAAAFDAARERRLF 199

Query: 196 FEFLLYS--GLRCSDSCRAGVQHLQ------------------------------NNIFS 223
              +L +  GLR  +      + +                                 I  
Sbjct: 200 IPLILATLCGLRRGEITALRWRSVDLDNGQLAVVASTEQTDAGTIREKEAKSGRARTIAM 259

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                        +    +  L +            D   +     +        +    
Sbjct: 260 PAMAVEELRRWRVMQAEELLRLGVRGDDDRHVVTQADGSPLQPRSLTHSVSEFLKE--WR 317

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            + HG+R   A+    +      +    G  ++      Y+ 
Sbjct: 318 VTLHGLRHSHASHMLASNIHPKIVQERLGHSSIAITMDIYSH 359


>gi|295112438|emb|CBL31075.1| Site-specific recombinase XerD [Enterococcus sp. 7L76]
          Length = 389

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 122/380 (32%), Gaps = 47/380 (12%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIR---LPYPHESTFIPAYMSALTGST 55
            P +     V +++ + GK  +    G    G+RIR     Y  +     AY   +   +
Sbjct: 1   MPKIS---NVYQDK-KSGKWYFVANLGYDEKGKRIRHWGRGYNSQREAKRAYDDYMNDFS 56

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                    +    + K     Y K  +  S+   +  +  S  D       +   + IT
Sbjct: 57  D----TAIKKNSTMSFKEFYETYFKPDYKRSVKSRTYENRVSSMDIHFAYFFNRKLKDIT 112

Query: 116 TKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              I+    +     SSA         +     AV    +  N    V   K+  + +  
Sbjct: 113 PPIIKKWQNTLSENYSSAYIRNIYGLFQKSLDLAVTLGLLNKNVAKQVGNVKKVKKKVDF 172

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN--------- 220
           WTK++ ++  + +            L++    +GLR  ++     +   +          
Sbjct: 173 WTKDEFEKVIATFDLSDYHEYFSFVLIWLLFMTGLRFGEAQALEWEKDIDFENRTLRVNK 232

Query: 221 ---------IFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNA 266
                     +  + +   +   + L D  ++LL              + ++ +    N 
Sbjct: 233 SMYYKNASEYYLTEPKTKASNRVIALDDDTVELLKQWKTLQTKNIPSKYVLSYNGVPTNK 292

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           +         +  A V++  AH +R   A++    G  A  +    G + +     TY  
Sbjct: 293 SATYHVITRHSKLASVHRIKAHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGH 352

Query: 325 GADRIRLGIKNSRRISSVVD 344
             +      + +R++++++D
Sbjct: 353 LYENAN--KEVARKLTNIID 370


>gi|15668543|ref|NP_247341.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
 gi|2497424|sp|Q57813|Y367_METJA RecName: Full=Probable integrase/recombinase protein MJ0367
 gi|1591073|gb|AAB98346.1| integrase/recombinase [Methanocaldococcus jannaschii DSM 2661]
          Length = 330

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 91/331 (27%), Gaps = 34/331 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYF 99
           +         +    +      ++   +K  +  +     +  +  ++  S       + 
Sbjct: 1   MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFL 60

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVA- 154
           D  I   G     ++ T             RK + SS  ++   ++V ++       +  
Sbjct: 61  DYCINYLGKNP-EELKTSDFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQE 119

Query: 155 -------INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
                        +E                 +  +S      +  L    L  +G R S
Sbjct: 120 FVEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRTRIRDALIIRLLWDTGCRVS 179

Query: 208 DSCR--AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           +          L N IF I+  KT    TV      ++LL            ++   + +
Sbjct: 180 EVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNS 239

Query: 266 ATQ----------FSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATY 311
                        F         +  + K+     H +R   A    + G     +    
Sbjct: 240 QGGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYL 299

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           G K+++    Y    +R    ++  +++  +
Sbjct: 300 GHKSMNTTLIYAHSKERAE-SLEFIKKLLRI 329


>gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937]
 gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937]
          Length = 139

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                +         +G+ K  S H  R   AT   + GA    + A  G  +V+  + Y
Sbjct: 25  TPNGITNLVSHYIRASGIAKWGSCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQIY 84

Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347
           T+ + R    +  S   +    SD+
Sbjct: 85  TQVSIRALQAVHASTHPAEQSGSDE 109


>gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
 gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella
           disiens FB035-09AN]
          Length = 404

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S  S+ S    +           D  + ++T   I    +
Sbjct: 109 LDVLIKE-KESHIGIDIRKESMASYHSTRIHLQEFIQKKYKVSDLAFSQLTENFIHEFQQ 167

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+    I     V+  K   +  +   +   +
Sbjct: 168 YFLGECGFQESSFYNVATHLKTVCRQAYREGVADILLFDKVKISKGNKKLPKALDRGAFE 227

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 F+    E    R  F F  Y+G    D       HL  +       K       
Sbjct: 228 KLKTLHFEELEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RQK 285

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 286 TGVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGISFPFTTHTAR 345

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 346 HTFATLITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQK 385


>gi|289566905|ref|ZP_06447312.1| predicted protein [Enterococcus faecium D344SRF]
 gi|289161311|gb|EFD09204.1| predicted protein [Enterococcus faecium D344SRF]
          Length = 347

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 97/342 (28%), Gaps = 43/342 (12%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
                    +  L      +    + +K   T   L+ E+        +  ++     + 
Sbjct: 8   KSRETQKVALLELNKKIDIKLNEKTLQKPDLTFHELVEEWLVIYK-RQVKESTYYPTNNI 66

Query: 99  FDQIIRKSGDFDY-RKITTKHIRSGVESRKHTPSSAIQFLTSMRV----LFKWAVRQ--- 150
            + I +K  +      I T  + +  E   +    + ++++ ++     LF +A+++   
Sbjct: 67  LNTIKKKIPETYIVSGINTVDLNNIFEDMIYKDDLSNKYVSVIKSKLNLLFSYAMKKGYV 126

Query: 151 --EYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCS 207
               +           K      +    ++ ++      S   +  L F++L  +G+R  
Sbjct: 127 EKNPINEVVIDYKRESKTIKIKDKFLEDDEYKRLVDFTTSHNKRYSLLFQWLYLTGMRPG 186

Query: 208 DSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDG---------------------FM 242
           ++       +     +    I         ++                            
Sbjct: 187 EAIALSKDDVHITNNNASVVINGTMMYRERSIADMKKSDSTKTAAGMREIDLPKKAIAIY 246

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
             L       +  F          T  + + +       ++K  S+H  R    +  A+ 
Sbjct: 247 NELLELNPNGQFLFQTTKGTPFQLTAINTYLRNHKADMKIDKKLSSHIFRHTHISKLAEL 306

Query: 301 GATAHELMATYGWKTVDQAE-TYTKGAD--RIRLGIKNSRRI 339
           G   + +    G +  D  E  Y       + +L  ++  ++
Sbjct: 307 GTPLYAIQDRVGHENSDITEKIYLHVTKGVKEKL-KEDIEKL 347


>gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
 gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica D18]
          Length = 281

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 80/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           ++ ++K     +LA N+  S+    D  +        +++  K++ +          P +
Sbjct: 16  VTTFQKHLAKTNLAKNTITSYLWTVDYFLNHY-----KEVNKKNLLAYKGYLVENFKPQT 70

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    ++  +++       +  +           +     +     + E    
Sbjct: 71  VNLRLQAINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKTKLKTDGYDE---W 127

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTP 249
                F+  +G R S+      +H+Q     + ++                  K +    
Sbjct: 128 YFIVWFMAATGARVSELLHIKAEHVQVGYLDLYSKGGKIRRLYIPKTLRIEATKWIKEKE 187

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+N+     H  R   A    D       
Sbjct: 188 LSSGYIFLNRFGQRITTRGIAQQLKHFAEKYGLNRDVVYPHSFRHRFAKNFLDRFNDLAL 247

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 248 LADLMGHESIETTRIYLRR 266


>gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis]
 gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans]
          Length = 346

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 7/123 (5%)

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  G   +       +                   L++ P        +  ++++N
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLN 267

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG+  + S H +R   AT    AG     +    G   V     YT
Sbjct: 268 RQ-----LKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYT 322

Query: 324 KGA 326
              
Sbjct: 323 HVL 325


>gi|325568474|ref|ZP_08144841.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
 gi|325158243|gb|EGC70396.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755]
          Length = 394

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 106/384 (27%), Gaps = 57/384 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR--- 65
           +   + + G   Y F    G   +                 A          + + +   
Sbjct: 10  IKLYKKQDGTTNYMFDYYVGINPKTGKKQKTTRRGFETEEEASLALAELSLLVATEQYLP 69

Query: 66  KKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
           KK  T   + + + K   +   +  ++     S F   I+    + + + ITT + +  V
Sbjct: 70  KKYRTFNDVYTLWLK--KYRGIVKESTYAGTLSIFKNNILPYFQEINVQDITTIYCQEIV 127

Query: 124 ESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181
               K  P    +++     + K A   E +  NP   V+ P+   +  +    ++    
Sbjct: 128 NKWYKIHPKRFKRYIYYFNAVMKHANYLELIFKNPMEFVQLPQNNIDLNQYKEFDNFYSK 187

Query: 182 -------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------- 223
                    +  +   Q  + F  L ++G+R  ++       +                 
Sbjct: 188 DELLEFLNFTKKNFEHQRFIFFHLLAFTGIRRGEALSLTWNDINFEEKYLHVSKTLTKGE 247

Query: 224 ------IKTQKTGTIITVELPDGFMKLLAMTPIGKE------TFFINNDKQKMNATQF-- 269
                    +   +   + L +  +  L      ++                 +   F  
Sbjct: 248 NGRSLIHPPKTKASFRKIFLDNQTLNYLQTWKELQKEKLNLTFDNPRQLLFPNHKNSFLE 307

Query: 270 --------SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                       +      G +    + HG R   A++   +G    E     G   V  
Sbjct: 308 PNIPKEWLQTIARHYKKNTGKDLKIITIHGFRHTHASLLYLSGINLKEAQERLGHSNVKT 367

Query: 319 A-ETYTKGADRIRLGIKNSRRISS 341
               YT  +D+ R   +   +++ 
Sbjct: 368 TLNVYTHLSDKQR--EQTVDKLTE 389


>gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides
           ovatus SD CC 2a]
 gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 368

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 6/220 (2%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             +R  + +SA  + ++ R L K A R ++   N    +++ + +       T ++++Q 
Sbjct: 151 HSNRSISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQDVKKEYLTLDEVKQL 210

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            +   +    + A  F   +GLR SD      +            +          +  +
Sbjct: 211 AATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLRI--RTQKTQTEATL 268

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300
            +         T       + +  +  +   K    KAG+ K  + H  R   A I    
Sbjct: 269 PISYEAYELCGTPGTGKVFKDLKRSMINYPLKNWLKKAGITKSITFHCFRHSYAVIQISL 328

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 329 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 366


>gi|255008732|ref|ZP_05280858.1| putative integrase [Bacteroides fragilis 3_1_12]
 gi|313146469|ref|ZP_07808662.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135236|gb|EFR52596.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 400

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 84/263 (31%), Gaps = 20/263 (7%)

Query: 89  VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             +  ++E+    + +     DF +  ++++ +    ++             +L +M+ +
Sbjct: 126 EGTAKAYEATLHSMQKHLCKTDFPFADLSSRLVIKYRDALLEAGVGKNTIGFYLHNMKAV 185

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFL 199
           ++    +  +A        R + +    +    + ++       S  +     R  F F 
Sbjct: 186 YRRGCLELNLAFPSPFCNIRIRSEKTVKQSLPMKQVKSLANLSLSVGTPECLARDIFMFS 245

Query: 200 LYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--------PI 250
           +Y+ G+   D        +   +   + QKTG ++ + +      LL             
Sbjct: 246 IYTRGMSFVDIALLKKSDVFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDTGGDYLFP 305

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELM 308
             +         K    +     K  + + G  +    H  R   AT++ + G   H + 
Sbjct: 306 MVDELEAPYSGYKKAYNKIRYALKKVSRRIGMNIPLRLHAARHCWATMAHENGTPLHTIS 365

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +      Y K  DR  L
Sbjct: 366 ECLGHSSEKVTRIYLKELDRSVL 388


>gi|218442312|ref|YP_002380638.1| integrase [Cyanothece sp. PCC 7424]
 gi|218175416|gb|ACK74145.1| integrase family protein [Cyanothece sp. PCC 7424]
          Length = 313

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 83/279 (29%), Gaps = 32/279 (11%)

Query: 88  AVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLT 138
           +  S  +  S  + I      G+ D   +    +R             ++  ++A + L 
Sbjct: 31  SPGSVATMRSSLNVIASLLTEGECDAMTLNWARLRYQHTAAIRAIFKERYCATTANKMLC 90

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFWSEG 189
           +++ +   AVR + +            +     +           +       +     G
Sbjct: 91  ALKRVLAEAVRLDLMEATDYAKAVDFPKIKGKKKLRGRALSGDEISALIEVCRQDESPLG 150

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM 247
            +       L  +GLR ++     ++    +     ++  K     TV LP   +  +  
Sbjct: 151 VRDAAIIAILRGTGLRRAELAALELRDFIADGGVLEVREGKGDKDRTVYLPHNVISYVND 210

Query: 248 TPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                                 + + ++        K +AT+AGV   S H  R+   + 
Sbjct: 211 WIAVRGDAPGALLCPIRKGGRIEGRHLHPDAVLKIVKKRATQAGVESFSPHDFRRTFCSD 270

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIK 334
             DAG     +    G  + +    Y +  +   R  ++
Sbjct: 271 LLDAGVDIVTVQKLAGHASPETTAKYDRRGEETKRKAVQ 309


>gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus
           xanthus DK 1622]
 gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus
           xanthus DK 1622]
          Length = 334

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 67/298 (22%), Gaps = 50/298 (16%)

Query: 88  AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--------------- 131
             +S  S        I+   G      I    I       +   S               
Sbjct: 20  KHSSVDSKRQILRDHILPFFGKVALANIGLAEIEDFKAHMRKKKSAAHKRKDSASKRAIR 79

Query: 132 -------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                        +    LT +  L   A     +         +P  K           
Sbjct: 80  KRQRSEPKPLSLKTINNVLTVLHKLLTLAEEHGVIRQ---APRVKPFGKLPKPPFDFLSF 136

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------QNNIFSIKTQ 227
            +  +       + R      + +GLR  +        L                     
Sbjct: 137 EEADQLLAVAEPEWRTLLRVAIKTGLRQGELIGLRWHDLTLTRGLLHVRRTIWRGIEGLP 196

Query: 228 KTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284
           K G   TV+LP   +  L           F   D Q +   + +         AG+ +  
Sbjct: 197 KGGRERTVDLPASVVDALNAHRHRRGRFVFCQEDGQPLTKGKMAAPLGRALRAAGITREV 256

Query: 285 ---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338
                H +R    +  A  G     +    G  T++    Y   + D  R  +    R
Sbjct: 257 GQIGWHDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLSPDTRREAVAVLDR 314


>gi|257084908|ref|ZP_05579269.1| phage integrase [Enterococcus faecalis Fly1]
 gi|256992938|gb|EEU80240.1| phage integrase [Enterococcus faecalis Fly1]
          Length = 397

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 110/384 (28%), Gaps = 64/384 (16%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
              K+   +G++ +YF+    R  R  +  +      Y+        +++   +      
Sbjct: 6   RFKKKIAANGQVTWYFQA--FRTTRRGFKSKRAAQLEYLKMKKQQKERKKVRKNTIDFNP 63

Query: 70  TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T + +  ++ +     +     +    +     + R  G+ +   + + ++   +   K 
Sbjct: 64  TFQEISDQWFEYYRSLNEQKRATYDKKKEILKTLNRWIGEKELEALDSDYLEELLFVLKE 123

Query: 129 TP------SSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTEGI------- 171
                     A   L ++R     +FK+ V+++ +  NP   V  PK +           
Sbjct: 124 RGIDGESKGYAKNSLQALRQTLNLIFKYCVKKKILHKNPMEGVRFPKYQKTVEELKQSLY 183

Query: 172 ----RPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIK 225
               +  TK+++Q   ++        ++  F    Y+G R  ++     Q +      I 
Sbjct: 184 SVNQKYLTKDELQTVLNYAIVNEDLPMSTLFHVLFYTGCRIGEALAIQPQDIDFENNEIL 243

Query: 226 TQKTGTI--------------------------------ITVELPDGFMKLLAMTPIGKE 253
             K  +                                   +   +   K ++       
Sbjct: 244 FFKQISKSSKAKDFTVETTKTVSSARRVVVTAFLMEKLKRLIHYLEEMKKTISFQIEEPY 303

Query: 254 TFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELM 308
            F                 +   K    ++G+NK  H    R    ++ A    +   L 
Sbjct: 304 LFVYLGEGKQGIPFRRDYVNTHIKRCVARSGINKPFHTHLTRHTMTSLCASY-CSWDVLK 362

Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332
              G      +E Y       ++ 
Sbjct: 363 ERLGHTDKSTSEIYRHITSTEKVS 386


>gi|148360255|ref|YP_001251462.1| phage related integrase [Legionella pneumophila str. Corby]
 gi|148282028|gb|ABQ56116.1| phage related integrase [Legionella pneumophila str. Corby]
          Length = 411

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 100/331 (30%), Gaps = 27/331 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEY 78
           F      RI L +  E T   A   AL                 +   +  TL  +  +Y
Sbjct: 52  FINKKRCRITLGHYPELTAEMAKNKALHLLGQIAMGIDPIAEKKATEVRDITLNQVFKDY 111

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136
            K+    +L   +  +++   D+            IT   I    E     H  + A   
Sbjct: 112 LKTR--KNLKPRTIDNYKHILDKAFTSWKSKPMLSITRDRIAKYHEKLGNEHGEAYANLA 169

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--------------DMQQF 182
           +  +R LF +A  Q   +    L ++ P ++    R W +                    
Sbjct: 170 MRILRALFNFAAGQYEDSSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYSGL 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +   +E  +  L    L     + + + +     L+   F+I   K     T+ + D   
Sbjct: 230 QECQNETLRDYLLLILLTGLRRQEAATIKWSDLDLKAKTFTINKTKNNESHTLPISDFLY 289

Query: 243 KLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            LL +        +I        +  +           +GV  + H +R+   TI+    
Sbjct: 290 DLLIVRKKKAINDYIFPGTGAAGHIIEPRKTIAHVIKNSGVQFTVHDLRRTFITIAESLD 349

Query: 302 ATAHELMATYGWK-TVDQAETYTKGADRIRL 331
             A+ L      K + D    Y    D  RL
Sbjct: 350 IPAYALKRLMNHKMSNDVTAGYI-IVDVERL 379


>gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli]
 gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae]
 gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli]
          Length = 346

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 7/123 (5%)

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  G   +       +                   L++ P        +  ++++N
Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLN 267

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG+  + S H +R   AT    AG     +    G   V     YT
Sbjct: 268 RQ-----LKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYT 322

Query: 324 KGA 326
              
Sbjct: 323 HVL 325


>gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 78/264 (29%), Gaps = 24/264 (9%)

Query: 86  SLAVNSRISFESYFDQII--RKSGDFD-YRKITTKHIRSG--VESRKHTPSSAIQFLTSM 140
            L+ ++ +++    +Q +  R          +   H+       +R+ +P  A   +T++
Sbjct: 132 GLSPSTLLNYVPVAEQFLAERFHNAVPNVAMLRATHVTGFVLRHARQLSPVRAGLMVTAL 191

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           R  F++   +  +A +    V                    +  ++      S G +   
Sbjct: 192 RSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECCDRTTSVGRRNHT 251

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKE 253
               L   G+R  +     +  +  +   I  +  G     + L +     LA       
Sbjct: 252 ILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDR 311

Query: 254 TFFINNDKQKMNA---------TQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301
                      N          +  S   +     AGV   +  AH +R   AT     G
Sbjct: 312 PRSATRRVFLRNRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQG 371

Query: 302 ATAHELMATYGWKTVDQAETYTKG 325
            +  E+      ++ +    Y K 
Sbjct: 372 GSLDEIGELLRHQSPNTTAIYAKV 395


>gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34]
 gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34]
          Length = 480

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 65/236 (27%), Gaps = 28/236 (11%)

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWT 175
           +S    + + P++A   L  +R + + A   E +++     ++  K          R  +
Sbjct: 235 QSSDRKKTYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLS 294

Query: 176 KEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225
             ++         +    +  +    F  +  +GLR ++        +  N   ++    
Sbjct: 295 YSELDHISAITLNQKNKVKALRDNAIFWLMYEAGLRRAEVINVNSFDIDMNRCQLRVVGK 354

Query: 226 ---TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAK 276
               +        +L +   K L +                      +            
Sbjct: 355 GNKERYVPFSRNSDLYNAMAKWLGVRLKDFNPNLPTLFCTINRYQSLTYMRLTTQTLNDL 414

Query: 277 ATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             K  +       S H  R   AT    +G     +    G  ++   + Y +  D
Sbjct: 415 CKKLNMLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTD 470


>gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism]
          Length = 347

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 52/304 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ + R+ A    LA ++   +  + ++ IR  G    + ++   + + +         A
Sbjct: 44  LLEQVRQVARVQHLAYSTEQCYAYWIERYIRFHGIRHPQTMSGPEVEAFLTDLAVQGRVA 103

Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----------IRPWTKED 178
                Q L+++  L++  +R E   ++   +    +                I      +
Sbjct: 104 ASTQNQALSALLFLYREVLRMEIGMLDAVRANRPKRVPAVLSVPEIRALLAGIDHLPTTE 163

Query: 179 MQQFKSFWSEGSQPRLAFEFLL-----------------------YSGLRCSDSCRAGVQ 215
                +    G+  RL     L                       Y  L  +     G Q
Sbjct: 164 PYGLMARLMYGAGLRLMECCRLRVKDVDLERGQLTVREGKGDKDRYVMLPAAARDGLGRQ 223

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------- 268
                    +    G            K L         F   + +   +          
Sbjct: 224 RAWRRSLHERDLTRGYGRVELPHALHRKYLHADCELGWQFLFASTRMSHDPRTGEIGRHH 283

Query: 269 -----FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                          + G  K  + H +R   AT   + G     +    G   V     
Sbjct: 284 VHDSAVQRAMTTVVRQLGWTKRVTCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMI 343

Query: 322 YTKG 325
           YT  
Sbjct: 344 YTHV 347


>gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99]
 gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99]
          Length = 506

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 9/137 (6%)

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FSIW 272
                I+  K G    V LP   ++ L                +                
Sbjct: 1   MMQVHIRDAKGGKDRFVPLPKRTLQALRYYWQTHHHPRFLFPGKDGKPDSLIDKGGIQKA 60

Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329
            K    +  ++KS   H +R   AT   + G     +    G  +++    YT+      
Sbjct: 61  LKRVIGECNIHKSISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYTRLTQITR 120

Query: 330 RLGIKNSRRISSVVDSD 346
           +  +K   +++++  ++
Sbjct: 121 KNTVKAINQLAALFSAE 137


>gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +  ++        K     AG+  N S H  R   AT   + G     +    G K V
Sbjct: 94  QRRHHLSDDVIQKAVKKAIRGAGILKNGSCHTFRHSFATHLLENGYDIRTVQELLGHKDV 153

Query: 317 DQAETYTKGA 326
                YT   
Sbjct: 154 RTTMIYTHVL 163


>gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 328

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 49/303 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
           +     R    T+      Y+        +  +   +  +    +        DF   ++
Sbjct: 15  QRKKRNRDSKKTI---FEIYK--------SEKTVKDYMFHLKDFLHFVYDGENDFSISEV 63

Query: 115 TT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                         +I    E RK   +S    L++++ L+K             + + +
Sbjct: 64  IPLMQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFK 123

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             R  E I   + +D+++    +   S    +       L Y+G+R  +      +H   
Sbjct: 124 VNRNIENILKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLQFKHYLK 183

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------------- 260
                  +   T    ++     K L       + + ++                     
Sbjct: 184 REDEYFFKLVQTKSGKDVYKPIHKSLVKKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILD 243

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    +   +      G + S H +R   AT  + +GA   E+    G       E
Sbjct: 244 NSPLSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTE 303

Query: 321 TYT 323
            Y 
Sbjct: 304 VYI 306


>gi|323487277|ref|ZP_08092579.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum
           WAL-14163]
 gi|323399418|gb|EGA91814.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum
           WAL-14163]
          Length = 410

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 108/374 (28%), Gaps = 56/374 (14%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAH 83
           +R+  G  +  P                            ++K     + +  ++  S  
Sbjct: 37  YREYVGPELADPKKPPKAIEKQLKLDEASLIDAIAKGKVEKRKAGLLFEVVAKQWLSSCK 96

Query: 84  WGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSM 140
               A ++   +  Y+   I    GD    KI+  HI+  V++ K  ++  +  + +  +
Sbjct: 97  PPVFANSTYEGYSYYYTHYIADVFGDRPVNKISPLHIQKYVDAMKEKYSAETVNKCINVL 156

Query: 141 RVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF- 198
             +F +     + +A+NP   ++R K     +  W+ +D+Q F +     S    A    
Sbjct: 157 IDIFNYAITPLKEIAVNPASGIKRLKVSRPQMTVWSDDDVQYFLNLPEVKSSEYYAMFCV 216

Query: 199 --------------------------LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                                       + G     +         + +  I      +I
Sbjct: 217 SLLIGSRPSEVCGLSELSLLDNPKRLDFWRGYDQHGAVSDMKTDGSHRVIRIPDILYKSI 276

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNK--- 284
               L     +L        E  F+      +    +S  FK    +     + ++K   
Sbjct: 277 HRRLLWKKEQQLKNPEFGNNEFLFVTKFGNPIRPNLYSKAFKRIVMQHNEQISKLDKIPE 336

Query: 285 --------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL---- 331
                   + +G R   AT +         + +  G  +V      Y       +L    
Sbjct: 337 GRRLLPVITLYGCRHSFATNALAGNNDPALISSIMG-NSVKTLLTRYAHPNQERQLSLIN 395

Query: 332 --GIKNSRRISSVV 343
               K  +++S  +
Sbjct: 396 DFADKALKKVSQNI 409


>gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3]
 gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3]
 gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 406

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 75/287 (26%), Gaps = 22/287 (7%)

Query: 75  ISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE- 124
             EY +          A+ +          +           D    ++    I      
Sbjct: 114 FEEYLRQTKERIGIDRALKTFKLRTYQLSLLREYLQKKYKVSDIPLSQLDKAFIEGFEYY 173

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               RK   SS    L++++ + + AV++  +   P L     +R     R  +++ +Q+
Sbjct: 174 LSIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGYSY-ERPKGEPRSISQDQLQR 232

Query: 182 FKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                 E    R+    F F  ++GL  SD      +++      +  +           
Sbjct: 233 IIDLEIEWENYRIVRDLFVFSCFAGLAISDVRNLREENIVLEEGELCIKGKRMKTKTPYR 292

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
              +                                      G+    + H  R   A++
Sbjct: 293 VQVLPPAWAIMERYRGKRAGFVFDVPTNDIIHNGMHYIQRNIGMESPLTFHMARHTFASL 352

Query: 297 S-ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRIS 340
               AG     +    G   +   + Y   +     R      +RI 
Sbjct: 353 ITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERIHREMQNVQQRIQ 399


>gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
 gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella
           formatexigens DSM 14469]
          Length = 413

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/394 (11%), Positives = 97/394 (24%), Gaps = 76/394 (19%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           + +Y +    GRR  +      T        L       +   +       L ++   Y 
Sbjct: 25  RYVYTYTDPFGRRKYIYATDLRTLREKENQLLKDQLDGLDVYAAGNAD---LNFVFDRYI 81

Query: 80  KSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAI 134
            +     L   +  +++  ++     + G     +I    +          +K   ++  
Sbjct: 82  STK--TDLRKTTYTNYKYMYNHFVRDEFGKRKIAEIKYSDVLYFYYHLINEKKLQINTLE 139

Query: 135 QFLTSMRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
              T +   F+ AVR + +  N          ++P R        T E  + F ++ +  
Sbjct: 140 TIHTVLHPTFQLAVRDDIIRTNPSDGVMAQIKKKPGRNHGVRHALTVEQQRAFMNYTANN 199

Query: 190 SQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------TGTIITV 235
                    F  LL +G R  +      Q L     +I               T   +  
Sbjct: 200 PIFCHWTPLFTVLLGTGGRIGEIIGLRWQDLDFENRTISINHSVVYYAQEGAKTRKSVFQ 259

Query: 236 ELPDGFMKLLAMTPI---------------------------GKETFFINNDKQKMNATQ 268
                    +   P+                                F N      N   
Sbjct: 260 VSLPKTEAGIRTIPMLDAVYDAFKEEYEVQKENGFNSTEIDGMTGFVFCNRFGNVHNPQT 319

Query: 269 FSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMATY 311
            +   K                         + S H +R    T   +       + +  
Sbjct: 320 VNRTIKRILESYNAEEVLKAKKEKRQPVILPHFSCHHLRHTFCTRFCEQETNIKVIQSIM 379

Query: 312 GWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
               ++     Y +  D  +  +++ + +S   D
Sbjct: 380 RHANIETTMDIYAEVTDMKK--VESMKHLSEKYD 411


>gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
 gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 74/272 (27%), Gaps = 13/272 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  +++       + N+  ++           G+     +             + PS+A 
Sbjct: 14  LEYFKERLRQRGASANTINTYARSLWLYESLYGNLSLESLND---YRNYLIAHYKPSTAN 70

Query: 135 QFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +  M    K   +    +     L+  + + +       ++ D ++ K    E     
Sbjct: 71  SRIYGMNQYLKLLEQNGAEIPAGYQLAAVKLQHRPFLDNVISQRDYERLKRGLKEDHNVF 130

Query: 194 LAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250
             F       +G R S+  +   +H++     + ++                 L      
Sbjct: 131 WYFVVHFLGSTGARISELLQIKAEHIRMGYMDLYSKGGKVRRVYFPEALCRDALDWLETR 190

Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAH 305
                  F N +     A   S   K  A +  +N      H  R   A           
Sbjct: 191 GLQTGFVFTNRNGAPFTARGISSQLKVLARRYRINPDTVYPHSFRHRFAKNFLSRFNDIA 250

Query: 306 ELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
            L    G  +++    Y T+ ++  R  I   
Sbjct: 251 LLADLMGHDSIETTRIYLTRSSNEQRAIIDEI 282


>gi|319411117|emb|CBY91522.1| Shufflon-specific DNA recombinase [Neisseria meningitidis WUE 2594]
          Length = 384

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 95/366 (25%), Gaps = 54/366 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           +TK R   G+ +Y  +    ++    +    TF    ++   G   + E    P      
Sbjct: 4   ITKRRNPSGETVYRVQVRVSKKGYPAFNESRTFSKKALAVEWGKKREAEIEADPELLFKR 63

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
            + K  TL   + +Y         +       +     ++    G     K+        
Sbjct: 64  GKVKMMTLSEAMRKYLDETLGAGRSK------KMGLRFLMEFPIGGIGIDKLKRSDFAEH 117

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP--------------- 157
           V  R+             S+A+Q L  +R + K A     + I                 
Sbjct: 118 VMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNM 177

Query: 158 -CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              S  R +  T            +            L     +Y+  R  + CR     
Sbjct: 178 VAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDD 237

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQK 263
              N  +   +           +    +L M                      I +    
Sbjct: 238 WHKNDCAWLVRDLKNPNGSTGNNKEFDILPMALPVIDELLEESVRKRMLANKGIADSLVP 297

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N    S  +       G+ +   H +R  +AT  A+ G T  ++       + +  + Y
Sbjct: 298 CNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDSWNSLQRY 357

Query: 323 TKGADR 328
                R
Sbjct: 358 VSVRKR 363


>gi|313678682|ref|YP_004056422.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
 gi|312950469|gb|ADR25064.1| site-specific recombinase, phage integrase family [Mycoplasma bovis
           PG45]
          Length = 265

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 76/259 (29%), Gaps = 17/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  +R       L+ N+  S+    +  +         K+   ++            P +
Sbjct: 1   MKRFRTYLKHQGLSDNTINSYLYGVNYFVNNY------KLNYDNLLKYKNFLIDNFKPKT 54

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + S+    ++  + +       +  +           +     +   + +    + 
Sbjct: 55  VNLRIQSINRYLEFINKIDLKIRAIKIQNKSYLENVISNADYLFFKRKLKITGFY---KW 111

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
                FL  +G R S+  +  ++H+Q   F + ++   T          + L       K
Sbjct: 112 YYIVWFLAATGARISELIKIKIEHIQLGYFDVYSKSGKTRRLYIPSKLSLSLKKWLLEEK 171

Query: 253 ETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                   N     +++   S   K  A K G++ +    H  R   A    +       
Sbjct: 172 RDSGYLFLNKYNNSISSRGVSQGLKKFAKKFGLDTNVVYPHSFRHLYAKNFLEKFNDISL 231

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 232 LADIMGHESIETTRIYLRK 250


>gi|298486002|ref|ZP_07004076.1| Integrase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159479|gb|EFI00526.1| Integrase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 413

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/369 (10%), Positives = 96/369 (26%), Gaps = 38/369 (10%)

Query: 10  FVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGST---------- 55
            +    +  G   + FR     G    + L    + +   A   A               
Sbjct: 35  RLYFVVSAKGNKRWEFRYKRADGKWSWVGLGTYPDVSAKRAREKAADNIKLVDSGIDPVQ 94

Query: 56  -PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRK 113
             +            T +     +         A ++      Y  + I+   GD     
Sbjct: 95  HKQSAKKVEETNAANTFRAAAETWYARKADSGRADSTLDKMRGYLDNDILPFLGDLQLED 154

Query: 114 ITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           I  K   + + + +   +   A +    ++ +F  A+ +     NP   +          
Sbjct: 155 IHRKDCAALLATIEGRKAFNVAKKVRGWLQQIFSQAIARGLCENNPASELLAIAAPAPKT 214

Query: 172 RPWTK------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +         D  +           R A    +++  R      A  + +     +  
Sbjct: 215 EQYPHLLEPELPDFLKAMRNSKSRIIARTAAWLTIWTASRPGMVRYAEWRDIDLETGTWT 274

Query: 226 TQ-KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------MNATQFSIWFKAK 276
              +   +    +     + +       E    +             ++    +  F   
Sbjct: 275 ISAEKMKMRRDHVVPLPTQAVTALRELHEFTGRHKLVFPGIGEVNAVISENTINSVFNRI 334

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGIK 334
             K  +    HG R  ++T+  + G     + A    K    +  Y K A   + R+ ++
Sbjct: 335 GYKDRIVG--HGTRHTASTLLREHGWDKDHVEAQLAHKEEGVSGVYNKAAYLLQRRMMMQ 392

Query: 335 N-SRRISSV 342
             +  + ++
Sbjct: 393 WYADYLEAL 401


>gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 387

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 82/274 (29%), Gaps = 14/274 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +    ++ Y K+     L + +    +S   +         + ++T   +R  +   K T
Sbjct: 103 SFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKT 161

Query: 130 ----PSSAIQFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                S+A + L++++      + K  +  +         ++                + 
Sbjct: 162 LCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGVKRIKSNIDYLTEEELIKFISLY 221

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP 238
             +       +    F F+ ++ L  SD+    ++ + N I  +     +      +++P
Sbjct: 222 YDRRLPERLERTLGFFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAIKIP 281

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                   +  +  +    +           +   K  A+   + K  SA   R   ATI
Sbjct: 282 LSIPAFKIIEELQGKRKEGHLFTSLQCDQVVNRQIKEIASILEIKKKVSAKTGRHTFATI 341

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                     L    G   + +   Y    D  +
Sbjct: 342 FLKKTKDVATLQKLLGHSNLKETMIYAHVLDESK 375


>gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2]
 gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2]
 gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2]
 gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 410

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 86/316 (27%), Gaps = 31/316 (9%)

Query: 42  TFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRI 93
                Y   +       +   ++       K  TL  L  ++          S A  +  
Sbjct: 75  EVNRRYQELMQTDGYVTAAKLKDAYLGIGVKQETLLKLFEQHNAEFEKKVGHSRAQGTFT 134

Query: 94  SFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
            + +  + I           D   +++    I          +K   ++   ++  ++ +
Sbjct: 135 RYRTVCNHIREFLPHTYKREDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLL 200
              A     +  NP         ++      T+ ++Q   +   + +     R  F F +
Sbjct: 195 VSIARNDGRLPFNPFAGYIN-SPESVDRGYLTQTEIQTLMNAPMKNATHELVRDLFVFSV 253

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----F 256
           ++GL  SD        LQ          T         +  ++LL +     E +     
Sbjct: 254 FTGLAYSDVKNLTADRLQTFFDGNLWIIT--RRKKTNTESNIRLLDVPKRIIEKYKGLAR 311

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGW 313
             +     N    +   K    + G       H  R  +AT      G     +    G 
Sbjct: 312 DGHVFPVPNNGSCNKILKDIGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGH 371

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K   + 
Sbjct: 372 TNIKTTQIYAKITAQK 387


>gi|254502117|ref|ZP_05114268.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|254505339|ref|ZP_05117487.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222436183|gb|EEE42865.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
 gi|222438188|gb|EEE44867.1| site-specific recombinase, phage integrase family protein
           [Labrenzia alexandrii DFL-11]
          Length = 373

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 87/352 (24%), Gaps = 45/352 (12%)

Query: 16  TRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
            + G   +Y+       G+R+R           A   A        +      ++  TL+
Sbjct: 6   KKDGSPYWYYDIPASIAGKRMR-ASTKRKNKREAQQVADEIERQMLDRKQLGHREEITLE 64

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------------R 120
             +S + K     S   N R         I  +  +  ++ +  K +            +
Sbjct: 65  KAVSFFLKRHQHVSDFKNVRWRLHKTLGWITPRHSEEPHKGLDPKMLVSDLRKGHFAELQ 124

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---- 176
           S   +  ++  +    L + R L  +    E   + P     +  +     +P  +    
Sbjct: 125 SWRLAAGNSKRTINGELAAFRKLLNYLEETEEFVMPPQPVKFKLLKVKNRAKPLNETELN 184

Query: 177 ----------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                      +    +               L  +G+R S+  +     +    +S   
Sbjct: 185 SLLKELDPRGYNGPMSEKATISKRDNYDFVVILADTGMRYSELSKLPWSMVDRENWSFID 244

Query: 227 QKTGT-----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                      I        +            +   +   +               +AG
Sbjct: 245 VYRPKVDNDGRIVCTKRVQDILKRRWHERQGSLYVFADSTGQGPRKYAPKGIIKAFERAG 304

Query: 282 VN----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +N          +S H +R   AT     G     +    G      +  Y 
Sbjct: 305 INTPEKVAIFGNRSIHSLRDTFATRVRRKGMGLDGIQKLLGHSDSAMSAKYA 356


>gi|307310193|ref|ZP_07589842.1| integrase family protein [Sinorhizobium meliloti BL225C]
 gi|306899745|gb|EFN30370.1| integrase family protein [Sinorhizobium meliloti BL225C]
          Length = 383

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/347 (8%), Positives = 90/347 (25%), Gaps = 35/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKGHGRR-----IRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + + + R+G+  Y  +    R                   A++        +   +   +
Sbjct: 22  IVERKRRNGQKTYIAQIRIMRDGVTVHSEAQTFERRPAAAAWLKKRETELAEPNALEKLK 81

Query: 66  KKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG 122
           +  +TL   I  Y ++S            +     ++I  +    +   + I +  I   
Sbjct: 82  EPQSTLADAIDRYVKESKKAIG------RTKSQVLEKIKDEFEIANMLCKDIGSADIVEF 135

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----------SVERPKRKTE 169
            +       P +   +++ +  +F  A     + ++               +     + +
Sbjct: 136 AKELSKGRQPQTVGNYVSHLSSIFAIARPAWKIDLDYSAMEDAQIVLRRLGLIAKSTQRD 195

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                 + D         E           L +    S   +  +  +  + +    ++ 
Sbjct: 196 RRPTLEEIDKLMEHYSDREKRYAEHIPMRRLIAFAIFSTRRQEEISRITWSDYEEDNRRV 255

Query: 230 GTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                    +     +      +              +     A   S  F    +  G+
Sbjct: 256 LVRDMKNPGEKIGNDVWCDLPPEAIRIIGAMPRTKAKEIFPHEARSVSASFTRACSLLGI 315

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            +   H +R    +   + G     +    G ++ +  + Y+    R
Sbjct: 316 EDLHFHDLRHEGVSRLFELGWNIPHVATVSGHRSWNSLKRYSHIKQR 362


>gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 401

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/325 (11%), Positives = 90/325 (27%), Gaps = 69/325 (21%)

Query: 73  WLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVES 125
               ++ ++      A + ++ ++  +  Q +    +     +           R  V+ 
Sbjct: 22  DFFKDFLETDVGNGKAADDTQRTYLCHLKQFVHWCQNQTLNPVEATFANLKRFRRWLVKE 81

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184
           +++  ++    L  +R  +   +  EY++ NP L +  P    +        + ++    
Sbjct: 82  QQYQTATISLKLAVLRRFYDALLENEYISFNPALRLRPPTEVRDPAATINFLENEEMNRL 141

Query: 185 -------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
                        + RL    ++  G R  D  R  ++++  N  +I  + +    T  +
Sbjct: 142 LDSLPTENTVHALRDRLLISLMVLQGCRTVDLHRVTMENMVKNGKNIGLRVSSKRHTRVV 201

Query: 238 PDGFMKLLAMTPIGKET------------------FFINNDKQKMNATQFSIWFKAKATK 279
           P        +    +                           + ++   F          
Sbjct: 202 PLTPDLAKLLRRYLRARRKAGETITDETPLFISVARNNEEQDKPLSRRSFRRIVDKYLGV 261

Query: 280 AGVN------------------------------------KSAHGVRKFSATISADAGAT 303
            G+                                      SAH +R  +AT++  AGAT
Sbjct: 262 IGLKELPCPKTLKKLTGSQEKSNLPTKAREFSQHKPKPRKLSAHSLRHTAATLALRAGAT 321

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
             ++    G         Y    DR
Sbjct: 322 LEQVQDLLGHTDPKTTMIYAHIGDR 346


>gi|227879276|ref|ZP_03997146.1| integrase [Lactobacillus crispatus JV-V01]
 gi|227861170|gb|EEJ68819.1| integrase [Lactobacillus crispatus JV-V01]
          Length = 328

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 87/310 (28%), Gaps = 28/310 (9%)

Query: 36  PYPHESTFIPAYMSAL-TGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRI 93
                 +F     + + + +   ++       +  T  K     + ++     +   +  
Sbjct: 1   RDYLTKSFKTEKEAKVWSTTLELQKAKGQAIAQQNTLFKDFYYLFVQTVKVHDVRKATFD 60

Query: 94  SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQE 151
           ++      I          K+    ++S ++     H+  +  + L  +R   ++A  + 
Sbjct: 61  NYVKAGKVIDNLFPTAKLGKLDDVQMQSILDKYGKTHSKKTVTELLKKIRTALRYAYVKG 120

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSD 208
           Y+  +    ++   ++       +          +      ++  L     + +GLR  +
Sbjct: 121 YIYNDFASLLKAHGKELPKRNKASSMSDLTKLKHYLLEHTDNEFNLMVLLEISTGLRRGE 180

Query: 209 SCRAGVQHLQNNIFSIKT---------------QKTGTIITVELPDGFMKLLAMTPIGKE 253
                 + +  +                     +   +  +V +P     LL        
Sbjct: 181 ILGIKPEDVHYDGQYYCVEVKRSISPTTDDTKLKTKHSRRSVTIPKNIYDLLKDISQKDS 240

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYG 312
            +  +    K +        K    K G+   + HG+R   A+           +    G
Sbjct: 241 GYLFDWFSFKQSG-----MLKELLKKIGIPSTTFHGLRDTHASFLFSNNIPLSYVSRRLG 295

Query: 313 WKTVDQAETY 322
             ++   E Y
Sbjct: 296 HDSILTTEKY 305


>gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
 gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX0104]
          Length = 389

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 105/372 (28%), Gaps = 51/372 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GKI     K    + +            ++  L           +P      
Sbjct: 17  IVSYKDSNGKIR-QKWKDTKLKKKGNKKRAEKIRDEFLLELESQLAMECECANP---DLL 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESR- 126
               +  Y + +    +A N+ + ++ Y  ++I +          ++   H++   +   
Sbjct: 73  FYDYLLNYLEVSK-KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYML 131

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T ++ I +   +R   + AV  E ++ N    V +PK+K    + + + ++ +   
Sbjct: 132 NDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLD 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             SE  +  L      + GLR S+        +      I                    
Sbjct: 192 ILSEE-KLYLVVLLTAFYGLRRSEVLGLKWSAIDFFNKKIVINHVIIENPENMSQLIKKD 250

Query: 233 ---------------------ITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268
                                +         ++L          E  F   D + M    
Sbjct: 251 QTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGDDYILEDNEYVFTMEDGRLMKPQY 310

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
            +        K G+ K   H +R  +A+I  D+G     +    G  +       YT   
Sbjct: 311 VTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLT 370

Query: 326 ADRIRLGIKNSR 337
           A       +   
Sbjct: 371 AGVKDRAAEALE 382


>gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820]
 gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820]
          Length = 361

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 77/318 (24%), Gaps = 64/318 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI------------T 115
           + +Y K       A N+  ++  +                D  + ++             
Sbjct: 29  VKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQRGIGLEDLKFEEMSNFVGWLRNPTGD 88

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K I    +  K   +S    L ++    ++  R             R +     +   +
Sbjct: 89  VKVIDLQPKKAKREETSVNAILNAVTSFLEYLNRTGDFKAIDMTKEARGRNFKGFLYHIS 148

Query: 176 K----------------------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           K                       +  +         + +L    +   GLR  +     
Sbjct: 149 KGKSYQKNILKLRVKKKIVQVLEHEQVKAIIDACHTKRDKLLIMLMYEGGLRVGEVLSLR 208

Query: 214 VQHLQNNIFSIKTQKTGT---------------IITVELPDGFMKLLAM-------TPIG 251
           ++ +      I                       ++ EL   +   L             
Sbjct: 209 IEDISTWDNQINITPRDHNENGAYIKLRKERKIDVSKELMALYTDYLVHEYGEDLEHDYI 268

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                 +   + +         +    + G+  +AH +R   AT    +G  A  +    
Sbjct: 269 FINLKESYFGKPLKYQSVLDLIRRLVKRTGITFTAHMLRHTHATELIRSGWDAAYVQKRL 328

Query: 312 GWKTVDQA-ETYTKGADR 328
           G   V    +TY   +D+
Sbjct: 329 GHAHVQTTLDTYVHLSDQ 346


>gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           R3021]
 gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae
           22.4-21]
          Length = 185

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 10/148 (6%)

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL 245
               + R   E +  SGLR S+     +  +   +  ++          V         +
Sbjct: 17  PIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAI 76

Query: 246 AMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
                         E  F++    +++        +    + G+  + + H +R   AT 
Sbjct: 77  QEWLKVRALFNPKDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATH 136

Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324
             +A +    +    G   +   + YT 
Sbjct: 137 MLEASSDLRAVQELLGHSNLSTTQIYTH 164


>gi|320182626|gb|EFW57515.1| Phage integrase [Shigella boydii ATCC 9905]
          Length = 358

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPRNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+        + N+  +  +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGVDSFTMADWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGV 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  +      +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGAVVKQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGILFSENPPTFHEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 280

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 65/245 (26%), Gaps = 12/245 (4%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
             +    I    +       +    ++++R  F   + +  +A                 
Sbjct: 18  DDLRRFQIEQQEDGVPV--PTMNSIVSALRFFFTQTLDRPDLARRLVRLAHPRNLPVVLS 75

Query: 172 R-------PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
           R         T     Q     + G+  R+A   +L      S+     V+  +   +  
Sbjct: 76  RDEVARLLNATTCLKHQAALSVAYGAGLRVAEVSMLKVTDLDSERMLLRVERGKGGRYRN 135

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                  +  +       +   +       F   +  + ++  Q        A  A + K
Sbjct: 136 AMLSEDLLRLLREWWKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRIVVEAAQAADIAK 195

Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341
               H +R   AT   + G     +    G   ++    Y K A R +R       ++  
Sbjct: 196 RVGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALYAKVATRTVRTVTSPLDKLGL 255

Query: 342 VVDSD 346
               +
Sbjct: 256 FKPGE 260


>gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
 gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus
           95/8201]
          Length = 384

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 46/326 (14%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +       +   S   K  +++ +   +  S    +L   S   F   F+ I     
Sbjct: 31  EKEIVKKRQPHKRKTSKISKEDSVERVFERFIDSKVKQNLRPKSLNQFLLMFNSIKAFHE 90

Query: 108 D-----FDYRKITTKHIRSGVESRKHTP--------------------SSAIQFLTSMRV 142
                 F    ITT  I   V   K+                       +    +  ++ 
Sbjct: 91  TQNAQTFYMTDITTNFISDWVYWLKNEYVRFDGHAYVPESSQTIGLADETISSRIKRLKT 150

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLA 195
              W +RQE ++ NP    E  ++    I   + ++        + + +   +  +  + 
Sbjct: 151 FINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELKSLLKVAKSYSNKSFKHFRDYVL 210

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIG 251
              L+    R +++       + +   ++  Q          TV L +   +LL      
Sbjct: 211 LHLLVDGMFRITEALLLSPSDIDHTNRAVIIQSNNAKSRKTRTVPLSNKTYRLLMQLLEE 270

Query: 252 KETFFINNDK--------QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301
            E F  + D         + ++        +  A +A + K    H +R  +AT    + 
Sbjct: 271 NEAFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEANIKKRFYLHLIRHSAATHYLSSS 330

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327
                L    G   +     Y+  AD
Sbjct: 331 GDVESLRKILGHADLRTVLIYSHLAD 356


>gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032]
 gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032]
          Length = 333

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 44/307 (14%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIR----------KSGDFDYRKITTKHIR-- 120
            LI  +  +      + +++ ++      +               D     ++   +R  
Sbjct: 11  ELIEGFLTARATRKPSPHTQAAYRRDLIGVATLAAELTTPPLPLADLRIGALSPGLLRTA 70

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               +     +S  +  ++    F + V ++ V  NP  +V RP+      +P   ED  
Sbjct: 71  FARFAADRAAASVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRGEDTP 130

Query: 181 QFKSFWSEGSQPRLAFEFL----------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
           +     +   + R    +           L +GLR S+     V  L       + +  G
Sbjct: 131 EQLLASAARGEGRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRVEVAG 190

Query: 231 T---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------------TQFSIWFKA 275
                  + +  G  ++L+     +   F     +  +                    ++
Sbjct: 191 KGGRPRVLPVEPGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQYLVES 250

Query: 276 KATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADR 328
              +AG+          H +R   AT  A+ GA A E+M   G  ++  ++TY +  A +
Sbjct: 251 CYRRAGIGDRVPRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQ 310

Query: 329 IRLGIKN 335
            R  ++ 
Sbjct: 311 QREAVRA 317


>gi|218133377|ref|ZP_03462181.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992250|gb|EEC58254.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC
           43243]
 gi|291527214|emb|CBK92800.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 379

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/369 (8%), Positives = 91/369 (24%), Gaps = 50/369 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + G     F    G++  +   +  T                E   +   K  TL     
Sbjct: 18  KDGLYQGRFVNRFGKKQTV---YAKTLNEVRQKLRNEQYE-DEKALNVVAKDVTLDEWYE 73

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +  +    +   +++ ++  ++ +I +  G      +    ++  +   +         
Sbjct: 74  IWMDTCK-KNCRDSTKETYAGHYRRIQKALGWRKLTSLNLLIMQQAINELETDNERKNSK 132

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
              + +L K       +  +         ++ +  R        +    +++ +     +
Sbjct: 133 KILVDMLEKAIDSDLLIKNSAKQINTVISKEVKKERRVLTVGETELFFSYAKDTFYYNLY 192

Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--------------------NNIFSIKTQKTGTIITVE 236
              + +G+R  +        +                            T+   +  T+ 
Sbjct: 193 VVAIDTGMRIGELMGLQWSDVDFEKKVVHVRRSLCYFRKDGKYVFEWHDTKTHNSKRTIP 252

Query: 237 LPDGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280
           L    M+ L                      K   F+  + +                + 
Sbjct: 253 LTTRAMEALKKQRVRGQEILLKNAQTAQDEYKNLVFVTRNNRPTQQFIVQECMDVTTRRI 312

Query: 281 GVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGI 333
                     S H  R   AT + + G     +    G  ++    + Y    D      
Sbjct: 313 QKEHPEFERFSPHCFRHTFATRAIENGMQPKSVQKLLGHGSLQLTMDLYCHVTDD--TLF 370

Query: 334 KNSRRISSV 342
              R++ +V
Sbjct: 371 DEMRKMEAV 379


>gi|304381559|ref|ZP_07364209.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304339922|gb|EFM05866.1| prophage L54a integrase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 406

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 109/400 (27%), Gaps = 71/400 (17%)

Query: 13  KERTRHGKIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           K + +  K  YY +         RR+   L    + +   A          K        
Sbjct: 7   KNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTT 66

Query: 66  KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGV 123
            K  T      E+ ++          +  +  S  + + +    D    KIT  + +   
Sbjct: 67  LKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVF 126

Query: 124 ESRKHTPS--SAIQ-FLTSMRVLFKWAVRQEYVAINPCLSV---------------ERPK 165
           +            +  L+  + +F++  R   +     L                 +R K
Sbjct: 127 DEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNK 186

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQN 219
                      +D+         G   R      L  EF   +G+R  +      + +  
Sbjct: 187 YLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDF 246

Query: 220 NIFSIKTQKTGTI--------------------ITVELPDGFMKLL-------------A 246
           +  S+    T                        T+ L     ++L              
Sbjct: 247 DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN 306

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +   F N+    M   +F+   +  A   G++K  S+H +R    ++ +  G + 
Sbjct: 307 DGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHRHISLLSQQGVSL 366

Query: 305 HELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
             +M   G          Y+   ++  +      ++  V 
Sbjct: 367 KAIMDRVGHSDHRTTLSIYSHVTEQ--MDKDMMNKLEQVK 404


>gi|254774453|ref|ZP_05215969.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|254777680|ref|ZP_05219196.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 357

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/312 (8%), Positives = 73/312 (23%), Gaps = 68/312 (21%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK--- 127
             +  Y         + N+  ++            +   D+R +    +   V   +   
Sbjct: 16  AAVDRYLAYLTDIERSPNTVKAYAHDLKDWFGFLAERGLDWRAVRLDDVGEFVAWLRLPL 75

Query: 128 ----------------HTPSSAIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVER 163
                            T S+  + L+++   +  A R             +       +
Sbjct: 76  RARHGQVAVLPSVPHHCTESTVNRKLSAVGAFYTHAARDGLDVSALLTSWQVGGARGGWK 135

Query: 164 PKRK------------------TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           P                      +  R  + +++Q          + RL F  L  +G+R
Sbjct: 136 PFLHHISKGAPRSRRVIALKAPKKLPRVLSPDEVQAILDGCGR-LRDRLLFAVLYDTGMR 194

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------------- 246
             ++       +      +  ++             ++ +                    
Sbjct: 195 IGEALGLRHNDIAAAEHEVTVRRRDNANGARAKSQTVRTIPVSSALIRLFADYLHSEYGD 254

Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
             +       +       +         +    + G++   H +R  +AT     G +  
Sbjct: 255 LDSDYVFVNLWGRPQGHPLTYAAVYDLVRRLRRRTGIDFDPHWLRHTAATRLLRDGVSIE 314

Query: 306 ELMATYGWKTVD 317
            +    G   V 
Sbjct: 315 VVAHLLGHAHVA 326


>gi|251772069|gb|EES52639.1| phage integrase family protein [Leptospirillum ferrodiazotrophum]
          Length = 296

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 86/300 (28%), Gaps = 16/300 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R R G      +K    +I            A+   +     +  Y++    + TTL   
Sbjct: 5   RKRSGSWQALVKKKGFGQI-ARTFDTKGEAEAWAKVIEAEMVRGVYLSQKEAESTTLAEA 63

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  Y       S         +                 I  K I +  + R  + S+A 
Sbjct: 64  LDRY--DREISSSKKGHLQEKKRIRTWKSHPLAKRFLATIQGKDIATYRDERIRSGSAAN 121

Query: 135 QF---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                L  +  LF+ A ++  +    NP  S+  P       R     ++++   + S+ 
Sbjct: 122 TVRLDLAIISHLFEIARKEWGMEGLKNPVKSIRLPSPPAGRDRRLQPGELEKLLEYLSDE 181

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAM 247
                   F L + +R  +        +     ++     K G    V L    + +L  
Sbjct: 182 MNQ--VVRFALETAMRRGELAGMTWDMVDLKKRTVTLPDTKNGQKRIVPLSSVAVAILKE 239

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306
               +       +         S  F     KAG+     H +R  + +   + G    E
Sbjct: 240 RLNTRRIDGEVWNIGL---DAISQDFAKACQKAGISGLHFHDLRHEATSRLFEKGFDTME 296


>gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434]
 gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434]
          Length = 294

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 79/283 (27%), Gaps = 7/283 (2%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH 128
            +  I+ +         A  SR         + R     ++    +TT  +      R+ 
Sbjct: 2   WEEAITGFMAFERIQGRATTSRKKNREQLAHLARTIPNAEYGPWSVTTPTLLQWYTDREI 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +     T++R  + W V   ++  +P   +   +R      P   + + Q  +    
Sbjct: 62  ALETRHSLRTTLRAFYAWGVAAGHLTTSPADVIPPVRRPGPNPHPLPDDLLGQALAK--A 119

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLA 246
            ++  L       +GLR ++      + L            G      +      +  L 
Sbjct: 120 DARQTLILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHGKGSKQRLVPLAPGLAALL 179

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                 +         + +         +         + H +R   AT + DA      
Sbjct: 180 TDATNADPHGYALPNGQGSHLSAERVADSVRHLIPSPYTLHALRHRFATTAYDATRDLFS 239

Query: 307 LMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVDSDDP 348
           +    G  +    + Y    AD++R  +    + S       P
Sbjct: 240 VQRLLGHASPTTTQRYVATDADQLRAVVAAVAQRSEYAALPHP 282


>gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +    S   K+   +AG+    SAH +R   AT   +AG     +    G K V   
Sbjct: 97  HHFDDGTLSRSLKSACKRAGIVKPVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATT 156

Query: 320 ETYTKGA 326
           + YT   
Sbjct: 157 QIYTHVL 163


>gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 336

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 81/317 (25%), Gaps = 35/317 (11%)

Query: 64  PRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRK 113
            R K  +L  L   +  +        +V++  ++                +   +     
Sbjct: 2   SRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDD 61

Query: 114 ITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           I +  + + ++     R ++  +    L ++R   +  +R +         +   + K  
Sbjct: 62  IQSDALLAFLDYVESRRGNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKA 121

Query: 170 GIRPWTKEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             R  T  + ++ +            G +      FL  +G R S++       LQ    
Sbjct: 122 LRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYNTGARVSEALAIRASDLQLERP 181

Query: 223 SIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---NATQFSIWFKAKA 277
                  K        L       L      +                    +   +   
Sbjct: 182 RQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKYV 241

Query: 278 TKA--------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADR 328
             A            + H +R   A     AG     +    G  +V     Y T     
Sbjct: 242 RSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQM 301

Query: 329 IRLGIKNSRRISSVVDS 345
            R  ++   + + +  +
Sbjct: 302 KRDVLEAFWKRAGLGPA 318


>gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 443

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 90/367 (24%), Gaps = 60/367 (16%)

Query: 19  GKI----IYYFRKGHGRRIRLPYPHESTFIPA---YMSALTGSTPKREYINSPRKKPTTL 71
           G+      ++F  G  +           F             +   R+     R  P T 
Sbjct: 68  GRWKEALRWFFVAGRAQVDGYGREQGQEFSADGASERIVRDEAGDTRDAQAEVRMDPQTD 127

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             +  +          A+ +  S+ +++   +R+SG  D   ++   ++  +        
Sbjct: 128 DEV--KILAYMRRTGKALRTERSYIAHYRDFVRRSGLADGSLMSGAMVKDYLNYLAMERK 185

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            A            +  R  +      +      +  + I     ++  +      +G  
Sbjct: 186 VASSTQKVALNALVYIARDVFEMDLGDIGDFVRAQNRQRIPVVMSKEETRLFFAELKGE- 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------------------NN 220
            RL  +    +GLR S+ CR  +Q L                                + 
Sbjct: 245 SRLMAQVQYAAGLRVSELCRLRIQDLDLKRNQIMVRCGKGGKDRVAPLSEKLVEALEVHL 304

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------------- 265
            +     +     +          L          +                        
Sbjct: 305 RWVRTGFEEDLARSDLDGVYLPDALKRKHSNAGRDWRWQWVWPSREISTDPRGGARRRHH 364

Query: 266 --ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                +         +AG+NK    H +R   AT   + G     +    G + V+  + 
Sbjct: 365 VLPRGYQRVVSMAGKRAGLNKRITSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQV 424

Query: 322 YTKGADR 328
           Y     +
Sbjct: 425 YLHVMQK 431


>gi|239908315|ref|YP_002955056.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
 gi|239798181|dbj|BAH77170.1| site-specific recombinase [Desulfovibrio magneticus RS-1]
          Length = 361

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 97/338 (28%), Gaps = 29/338 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-- 71
           +R+++ +          R+ R  +P +S    +Y +A+     KR+ +   + K  T+  
Sbjct: 6   KRSKNPRWKGVVTVHRNRKER-RFPDDSQ--KSYRAAVQWEEEKRKEMMEKQTKVDTVCS 62

Query: 72  -KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRSGVES--RK 127
               ++ Y   +   S +  +     +   +  +  G       I T      +    +K
Sbjct: 63  VATWLNNYLDYSK-ESQSSKTYDEKLATCKRFAKFIGKETLASDIDTSKGMEFLRGQFKK 121

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFW 186
            T  +  +   ++   + W  +            +   R  E     +   +   +K F 
Sbjct: 122 RTGYATNRDRKNLSAAWGWGRKYVPGFPRNENPFQDIDRFPEVRSPRYVPPEEDFWKVFN 181

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------- 239
               Q ++     L+ G R  +  R  V  L     S+           +  D       
Sbjct: 182 LAEGQDKVMLLTFLHLGARKGEVFRMKVDDLDLVTGSVNIWTNKRENGNKECDVLPLTNE 241

Query: 240 ---GFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
                   L          F+N                    + +    +A V     H 
Sbjct: 242 LRLAIKAWLESRRAKSPFVFVNTSDAEFALKYWGEPFKYRQHFMEKLCKRAKVKPFGFHA 301

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R  +ATI   AG     + A    K+      Y  G 
Sbjct: 302 IRHLTATILFRAGQPLSVIQAILRHKSPTTTARYLHGL 339


>gi|197265110|ref|ZP_03165184.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243365|gb|EDY25985.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 406

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 63  -----SPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RIARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRK 167
           I+   I    ++ K       +    +R++     ++           NP L+ ++P+ +
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNR 216

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   +E    +++   +    +      + +G R  D C    + + +++  ++ +
Sbjct: 217 VTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQE 276

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++ +  + 
Sbjct: 277 KTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTS 336

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    ++G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 337 TFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDT---QKLLGHKSRKMTDKY 390


>gi|167589040|ref|ZP_02381428.1| prophage DLP12 integrase [Burkholderia ubonensis Bu]
          Length = 358

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 83/334 (24%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R       Y      G               A                   K   T   
Sbjct: 5   KRKTSPNWQYKLYPPGGGTPIQGSTGTRDKAQAQEFHDRLKVDLWNQARLGTKPRHTWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131
            +  Y            S  + +++   + R         I    I +   +++  P   
Sbjct: 65  AVVRYVVEREGLP----SLETSKTHLRWLDRHLAGVALADIDRSRIDAIALAKRREPRVV 120

Query: 132 ----------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           +  + L  ++ +   AV  E++   P     +   K        
Sbjct: 121 RTRHGVVETGRSVSDGTVRRVLGVLKAVLNAAVEWEWLDRAPVTKRAKVVSKRIRWLTPA 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL+ S    A      +   +   +    
Sbjct: 181 ESERLLAELPAHLADMARFSLETGLRRSNVTGLQWSQVDLARRVAWIHPDQAKAKKAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++       ++  A          +   + K      +  ++    +A + +   H +R
Sbjct: 241 PLSDTAIAVLLRQRATKRAPGFADSVFVYQGKPVYQTTTAAWRKALERARIRDFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|296113731|ref|YP_003627669.1| phage integrase [Moraxella catarrhalis RH4]
 gi|295921425|gb|ADG61776.1| phage integrase [Moraxella catarrhalis RH4]
          Length = 411

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 101/366 (27%), Gaps = 35/366 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDAKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S     I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPTMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
                    +A + L     ++++A  ++        L     + +    +       Q 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNPLEHLHERLEKHEPKQLAHVSEQD 224

Query: 181 ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                   K+  SE ++  +     L+                   I+ I   +      
Sbjct: 225 LHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWVEIDFNKGIWEIPAHRMKKRRP 284

Query: 235 VELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
             +P     + LL                +  +       F+    + G +  ++ HG R
Sbjct: 285 HVVPLSKQALALLQQLHSLTGFDTHLFPSRAKDRKNAHQRFRMALNRLGYHDTQTLHGFR 344

Query: 291 KFSATISA----DAG--ATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISS 341
             ++T       + G       +      K    A  Y K     DR  +    S  +  
Sbjct: 345 HVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWYSDWLDG 404

Query: 342 VVDSDD 347
           +V ++D
Sbjct: 405 LVKAND 410


>gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium]
          Length = 163

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTSRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG   H +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIHTVQELLGHTDVKTTQIYTHVL 163


>gi|295398101|ref|ZP_06808150.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
 gi|294973620|gb|EFG49398.1| bacteriophage integrase [Aerococcus viridans ATCC 11563]
          Length = 388

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 93/343 (27%), Gaps = 49/343 (14%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
                       Y              ++ +    T + + +E+        +  ++   
Sbjct: 35  KRGFKTKKEAKHYYD-NAKLQFNNGVYDTSKPIRQTFETVYNEWLDIY-ADDVESSTLNK 92

Query: 95  FESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
            + YF   I+ + G     KI +  ++  ++  +    S  +F      +  +A  + Y+
Sbjct: 93  TKQYFRLHILPQFGHILIDKINSSLLQQTLKEWRLKYKSFKKFYNYTCRVLDYAHFKGYI 152

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQ------------FKSFWSEGSQPRLAFEFLLY 201
             NP   V  PK K +  +  T ED                 S   +       F  L +
Sbjct: 153 TENPKTKVIVPKAKVQYKQTKTTEDFYTKDELNQFLQYAEQYSKDLDNGMWYTFFRMLAF 212

Query: 202 SGLRCSDSCRAGVQHLQN-----------------NIFSIKTQKTGTIITVELPDGFMKL 244
            G+R  ++       +                     +   T+ + +   + L D  + +
Sbjct: 213 VGIRRGEALALTWNDINFKEKTINIDKALKVGDNNIPYIGDTKNSNSDRILTLDDITVSI 272

Query: 245 LAMTPIGKETFFINNDKQKMNATQF---------------SIWFKAKATKAGVNK-SAHG 288
           L    + +    +          Q                    +    K      + HG
Sbjct: 273 LKRWKVQQARILLGFGYNVTAPNQLLFSKLDNTHLDVSSPRNRLERICKKNNFKMINIHG 332

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            R    ++  +AG    ++M   G   +      YT      +
Sbjct: 333 FRHTHCSLLFEAGVPMKDVMDRLGHSDIQTTMNIYTHVTKESK 375


>gi|331002078|ref|ZP_08325597.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411172|gb|EGG90588.1| hypothetical protein HMPREF0491_00459 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 309

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 82/292 (28%), Gaps = 28/292 (9%)

Query: 64  PRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KH 118
           P+   TT  LK    E+      G++   +   +      + +   +     IT    + 
Sbjct: 2   PKDFQTTDLLKDFYKEWIAIYKEGAIRDVTLSKYRMSLIWVEKLVPNLRLCDITRVEYQQ 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
           I +         ++       ++     AV +  V  +P     ++      + I+   +
Sbjct: 62  IINDYAKEHERQTTMDFHHQ-LKGAILDAVDEGLVPKDPTRKVIIKGRIPSKKKIKYLNQ 120

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
            ++       + G +    +  LL   +G+R S+              ++   KT     
Sbjct: 121 FELHSLLKSLTLGDEVSWDWFILLLAKTGMRFSEGLAITPNDFDFAHQTVSVNKTWNYKE 180

Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
                                  M+   +         I     K+  +  +        
Sbjct: 181 GGGFSPTKNKSSVRKVQIDWQVVMQFATLVKDLPSDKPIFVKDGKVYNSTVNDILVRYCK 240

Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
           K  +   S HG+R   A+I   AG +   +    G  ++   +  Y      
Sbjct: 241 KLNIPIISVHGLRHTHASILLYAGVSIASVARRLGHASMTTTQKTYLHVIQE 292


>gi|323153858|gb|EFZ40093.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 416

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 31/356 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 52  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 110

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 111 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 169

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 170 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 229

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 230 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 289

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 290 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 349

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           T+ +D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 350 TMLSDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWMERLGILAGTHE 405


>gi|224282976|ref|ZP_03646298.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140132|ref|ZP_07802325.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132642|gb|EFR50259.1| phage integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 406

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 98/388 (25%), Gaps = 67/388 (17%)

Query: 20  KIIYYFRKG-------HGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           K  ++FRK          RR  +       +   A   A      +   +   +  P T 
Sbjct: 21  KGRWHFRKDMGTDPATGRRRPPIEATGMVKSEARARFQAKIAEWERDGRL-PSKDGPKT- 78

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
                 + +      +   +  +  S+   +    GD    ++T   I       + T  
Sbjct: 79  ADYFERWMEEHRAA-INPTTWRNESSWMRTMNAIIGDIRLNRLTANDINGMCRRLRRTRK 137

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
             +   +L  +  + + A R   +A +P  +V R              D  +        
Sbjct: 138 SKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALAE 197

Query: 186 ----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                       E  +  L FE    +G+R  +        L+ +              +
Sbjct: 198 PDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGIPVINVCQQAKPI 257

Query: 236 E--------------------------------------LPDGFMKLLAMTPIGKETFFI 257
                                                      +  ++          F 
Sbjct: 258 PAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVFT 317

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N     +        ++     AG+     +  R + AT  A AGA+  E  A  G   +
Sbjct: 318 NLYGHPIRRDNEEKRWRRALKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTDI 377

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
                YT   +R RL       +  + D
Sbjct: 378 HTTSVYTHWRER-RLAETLDAALPDLRD 404


>gi|212712846|ref|ZP_03320974.1| hypothetical protein PROVALCAL_03943 [Providencia alcalifaciens DSM
           30120]
 gi|212684538|gb|EEB44066.1| hypothetical protein PROVALCAL_03943 [Providencia alcalifaciens DSM
           30120]
          Length = 377

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 102/355 (28%), Gaps = 44/355 (12%)

Query: 9   PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           P +  +   R+GK+ + ++                       A T    ++         
Sbjct: 13  PNLYCKLDKRNGKVYWQYKHPLTGTFHSLGTDAEEAAQVASQANTIIAEQQTKQILSIND 72

Query: 68  P----------TTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                       ++   I +Y +          L  NS        +   +  G    + 
Sbjct: 73  RLSGIKNKKLGISVTNWIDKYLEVQKDRLDAQELKFNSYKQKIKPLNLFRQHCGTLSLKD 132

Query: 114 ITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           IT   I   ++  K       A      +  +FK A    +V      ++   + +    
Sbjct: 133 ITALEISRIIDEVKMLGHDRMAQVVRMVLIDVFKEAQHFGHVPPGYNPALATKQPRNRIK 192

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           R     D  +     +E   P L    LL   +G R  D  +     + +++  I+ +KT
Sbjct: 193 RERLNFDEWKVIYAQAENHPPYLQCGMLLAIVTGQRIGDIVKMKFSDIWDDMLHIEQEKT 252

Query: 230 GTI-------ITVELPDGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWF 273
           G+            +     ++++       + ++ + +          ++ A   +  F
Sbjct: 253 GSKLAIPLSIRCDAINMTLKQVISQCRDSVVSPYLIHYRHTTSQAKRGEQVTANTLTTTF 312

Query: 274 KAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           K    K G+        S H  R  S  +  + G          G K+    + Y
Sbjct: 313 KKARDKCGLTWAEKSAPSFHEQRSLSERLYREQGINT---QKLLGHKSQKMTDKY 364


>gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
 gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella
           ruminicola 23]
          Length = 409

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 72/272 (26%), Gaps = 25/272 (9%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHTPSS 132
            K       A  +        + I           D   +++T   I+       +    
Sbjct: 120 LKRRVGKDRAEGTYKIQMRSRNYIADFLRTNYKRNDIAMQELTPDFIKEFSVYLSNERGL 179

Query: 133 AIQFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           A   +      ++ +   A     +  N         +        T+E+++   +   E
Sbjct: 180 AHSTIWLSCMHLKGVVGRAHDNGKIQRNVFAQFHISPKCK-ERTFLTEEELKTVMTHEFE 238

Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
            +     R  F F+ ++ L   D       ++                        +KLL
Sbjct: 239 DANLAFIRDLFVFMNFTALSFVDLKELTTDNIVEIDGDKWIIG---KRHKTDVPYQVKLL 295

Query: 246 AMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297
            +     E +     +   +              K    + G++K  SAH  R   AT++
Sbjct: 296 DVPLQIIERYSNFPKENPKSVFGEVNYWSVCKKLKTVMKECGIDKPISAHCARHGFATMA 355

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     +    G   +   + Y +   + 
Sbjct: 356 LTNGMPIESVSRVLGHTNIVTTQIYARITTKK 387


>gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 159

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 47  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 106

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 107 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 138


>gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN]
 gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN]
          Length = 291

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 23/270 (8%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L            LA  ++  +     +  R  G       T + +R          +SA
Sbjct: 11  LRQRMIDDMRMRQLAPKTQDIYLHIVREFARFLGRSP-DTATVEDLRRYQLYLVDHGTSA 69

Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
                 +T ++  F   + +  + +     ++  +         + +++++         
Sbjct: 70  VSLNHAITGLKFFFTVTLDRPELIV----RMQPVRVPRILPVVLSPDEVRRLIEAAG-NL 124

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------------LP 238
           + + A      +GLR S+     V  + +   +++ ++                    + 
Sbjct: 125 KHQTALSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPVLLERLRVW 184

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
               +       G   F   +   +++  Q +    A A  A ++K    H +R   AT 
Sbjct: 185 WRMARAQGKMFDGGWLFPGLDPLDQLSTRQLNRAIHAAAEAAHIDKRVSMHTLRHSFATH 244

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +       +    G   ++    Y + A
Sbjct: 245 LLEQKVDIRVIQVLLGHAKLENTALYVQVA 274


>gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
 gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium
           symbiosum WAL-14673]
          Length = 289

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 67/256 (26%), Gaps = 11/256 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+E++   H    + N+   +                 K           ++ H P+S  
Sbjct: 17  IAEFQNYLHQEERSRNTITKYIRDLKVFFTFLDGQPMAK-EALLDWKKHLTQTHAPASVN 75

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L S+     W      + + P     +     +      +       +   + ++  L
Sbjct: 76  SMLASVNKFLDWL-ELPGLKVKPLKIQRQIFSNPKKELTTEEYRRLIKAAENRQNNRLSL 134

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             + +  +G+R S+      +  +        +       + LP    + L      +  
Sbjct: 135 LLQTICSTGIRVSELKFITAESAKTGRAEADCKG--KTRIIFLPPDLCRALRHYCRERGI 192

Query: 255 F----FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
                F   +   ++ +      K     AGV       H +R   A            L
Sbjct: 193 DAGIIFCTRNGCPLDRSNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRL 252

Query: 308 MATYGWKTVDQAETYT 323
               G   V     YT
Sbjct: 253 ADLLGHSNVSTTRIYT 268


>gi|323156159|gb|EFZ42318.1| phage integrase family protein [Escherichia coli EPECa14]
          Length = 418

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAYMLQQWADMIDSWIDGEH 398


>gi|260854794|ref|YP_003228685.1| integrase [Escherichia coli O26:H11 str. 11368]
 gi|257753443|dbj|BAI24945.1| integrase [Escherichia coli O26:H11 str. 11368]
          Length = 409

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 31/356 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 104 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 162

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 163 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 222

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 223 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 282

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 283 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 342

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           T+ +D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 343 TMLSDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWMERLGILAGTHE 398


>gi|237786204|ref|YP_002906909.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759116|gb|ACR18366.1| putative phage-related integrase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 385

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 96/361 (26%), Gaps = 52/361 (14%)

Query: 21  IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
            +  +R   G      +P +      Y+     +  + E+IN   K   TL  L   +  
Sbjct: 15  WVARYRDQIGTEHSKTFPTQKQ-AKNYLQEQERALRRGEWIN--EKTAPTLGELWETWEA 71

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----------T 129
           +A        +    +     +     +     IT   +R+ +   +            +
Sbjct: 72  TATT----PGTLTVRQRAGKNL-GNLAELHINHITPALLRTWINQLRTGRPWAKNHTGLS 126

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFW 186
             +   + + +      AV    +A +P   V     P+   E       E +Q      
Sbjct: 127 ERTVRNYWSQLSGCLHMAVDDGLLAASPTSKVSIGRSPRMAVERCHIPDMEQVQNLIHVC 186

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKT------------------ 226
               +  LA   +L   +G+R S+      +++      ++                   
Sbjct: 187 DATGRDTLATMVILAASTGMRSSEVAGLRWKNIDRRQHMVRVVEQAASSHIKEPPTGEAR 246

Query: 227 ----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
               +   +   + LP   ++ L    +   T          +              A  
Sbjct: 247 WAKLKTQTSRRDIPLPAATLQRLRKHRLKHRTGPDEPMFLTPSGK-MWRADNVCKAMAPF 305

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNSR 337
               H +R   A+     G     +    G  +     +TYT       +R R       
Sbjct: 306 GFRFHDLRHLYASHLIRQGLGVKAVQELLGHASASTTLDTYTHLWMDETERARGAADELV 365

Query: 338 R 338
           R
Sbjct: 366 R 366


>gi|260557960|ref|ZP_05830172.1| shufflon-specific DNA recombinase [Acinetobacter baumannii ATCC
           19606]
 gi|260408470|gb|EEX01776.1| shufflon-specific DNA recombinase [Acinetobacter baumannii ATCC
           19606]
          Length = 337

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 95/323 (29%), Gaps = 21/323 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   R        R    R              A    L   + +    + P K   +
Sbjct: 1   MQKPTRRGNAWRIEVRFKGKRYAATRDTASECEQWAATKLLELQSEQP--TSEPEKIHIS 58

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
            + L   Y +       +    +       +   +  D     +T   ++   + R  + 
Sbjct: 59  FQALFDMYYQDEGRKMKSARLIVQMLKCLKKNWGELADESIHNLTPALVKQWRDKRLKQV 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ------- 180
             ++ I+ +     +F +A ++ ++   NP   + +P       +  + + +        
Sbjct: 119 KGATVIREMAMYSSVFDFARKELFLTKENPFKEITKPSAPPPRHQRISDDHINKVIKGLD 178

Query: 181 QFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                     + R+A+   F L + +R  +        +  +   +   K G+   V L 
Sbjct: 179 YEWGKTPTQPRHRVAWSFLFALETAMRKGEILSVQKHLIFTDFIRLLDTKNGSSRDVPLT 238

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
               ++L            +     + +  F + ++    + G++   + H  R  + T 
Sbjct: 239 AKAKEML----SWLPEDPNDTRMVPLTSNAFRLIWQRNLRRVGLDGVITFHDSRHEAITR 294

Query: 297 SA-DAGATAHELMATYGWKTVDQ 318
              +       L    G KT+  
Sbjct: 295 FVHEYRLPVEILAKITGHKTISV 317


>gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A]
 gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A]
          Length = 312

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 90/288 (31%), Gaps = 23/288 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + +   +  +     S++      G++   +   ++     + +   D    +      +
Sbjct: 2   VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 61

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
             +      H   + + F   ++     AV +  +  +P     ++  + + +  +   +
Sbjct: 62  KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQ 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            ++    +       P   +  LL   +GLR S++             ++   KT     
Sbjct: 122 FELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKN 181

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                          V+L    +  L++               K+  +  +        +
Sbjct: 182 GGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQ 241

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           AGV   S HG+R   A++   AG +   +    G  +++  + TY   
Sbjct: 242 AGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV 289


>gi|157325251|ref|YP_001468673.1| Int [Listeria phage B025]
 gi|66733257|gb|AAY53074.1| Int [Listeria phage B025]
          Length = 384

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 93/347 (26%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  +GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLTNGKYAVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQVQHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K   + + K+   G  + ++   ++  ++Q +    +      I     +  +     
Sbjct: 58  NFKDFYTLFMKTFKDGKSSQSTINLYDLAYNQFVDYFNEKIKLNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP        +     +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPATGAHISGQDVAKTKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                 S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELAKFHSVSRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFSIWFKAK 276
                + + +  ++ L         +             FI    + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTVQYLQSYLTWHTAYIKEHDIKNPLMLLFITYHNKPIDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CNTIDSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
 gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 38/263 (14%)

Query: 108 DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             D+  +    IR  V +      +P+S  + L++ R  F        +  NP   V  P
Sbjct: 4   RTDWAAVKEADIRRWVAAAARDGLSPASLARRLSAWRGFFDALAEDGRILANPVQGVRPP 63

Query: 165 KRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           KR     +    +   Q              S+ R   E    SGLR S+      + LQ
Sbjct: 64  KRPRRLPKALPVDQAVQLVDGPVEAEQAFTASRDRAMAELFYSSGLRLSELTALDHRWLQ 123

Query: 219 NNIFSIKTQKT--------------GTIITVELPDGFMKLLAMTPIGKETFFINN----- 259
            +    ++                 G   TV +    +  L      +  +   +     
Sbjct: 124 ASGDGARSSAWLDRPAAEVQVLGKGGKRRTVPVGRAALAALDAWLEIRGEWLAAHPAADT 183

Query: 260 -------DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310
                    ++++     +   A A + G+ +    H +R   A+    +      +   
Sbjct: 184 APLFLSLQGRRLSNRSVQLRMDALAQRRGLPQHVHPHVLRHSFASHMLQSSGDLRAVQEL 243

Query: 311 YGWKTVDQAETYTKGADRIRLGI 333
            G  ++   + YT   D   L  
Sbjct: 244 LGHASIGTTQVYT-ALDFQHLAA 265


>gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
 gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella
           marshii DSM 16973]
          Length = 387

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 104/326 (31%), Gaps = 36/326 (11%)

Query: 57  KREYINSPRKKPTTLKWLIS---EYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFD 110
            +E      +   TL  L     E +K     +L+  +  +F+     F   ++  G  D
Sbjct: 55  LKERYMQQSRPMPTLTELYQSVCEAKKELQGRTLSKATVKAFKDSHKSFVHFLQVRGRTD 114

Query: 111 --YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
               ++    +            +  SS    L  +  + + A+++ YV  +P     +E
Sbjct: 115 CMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELIDIE 174

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +     + +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 175 TPTYERNALTADDVQKLLAYRPHRSTENHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLSD 234

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +           +   +   N+  F+   +  + 
Sbjct: 235 GRRYISLCRTKTQNRSIVPLLPIAEEILAIVSHGRREGLFFREFPCNSN-FNRTIQEISI 293

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y +   + ++  
Sbjct: 294 KAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVT-KSKIAK 352

Query: 334 K-----------NSRRISSVVDSDDP 348
           +             R+   +  S  P
Sbjct: 353 EMQPLMGSERTRELRKALRLCPSRPP 378


>gi|293375666|ref|ZP_06621939.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325842952|ref|ZP_08167804.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
 gi|292645717|gb|EFF63754.1| phage integrase, N-terminal SAM domain protein [Turicibacter
           sanguinis PC909]
 gi|325489478|gb|EGC91846.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter
           sp. HGF1]
          Length = 326

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 91/293 (31%), Gaps = 44/293 (15%)

Query: 82  AHWGSLAVN----SRISFESYFDQII--RKSGDFDYRKI------TTKHIRSGVESRKHT 129
            H+ +L  +    + IS+E                  +I        +H    ++ +   
Sbjct: 21  RHFLNLKASSSHYTAISYERDILDFFQVDYIEQIQLEQIIAVNMFDVEHYLLDLKGKGCA 80

Query: 130 PSSAIQFLTSMRVLFKWAVRQE---------YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            ++  + ++S+  L+KW ++ +         Y      L  E+PK   +     T+++ Q
Sbjct: 81  SATINRKVSSLSSLYKWLLKYQDNRTGKSLLYFNPFGNLKDEKPKVNNKETEFLTQDECQ 140

Query: 181 Q----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           +    F +      + +      L + LR S+     ++ +                   
Sbjct: 141 RLISIFDTRKIVELRNKTIIVLALTTALRKSEMINIKLKDITTYGEYDVIHVMRKGNKKD 200

Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATK 279
              I   L     + +  T         +      +              +   K+   K
Sbjct: 201 MVKIQSSLKRLIEEYIERTNRDMIQDAESYLFIGHSRNKRNNEKLDPSSLNYMLKSTCKK 260

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           AG++K    H  R  + T++   GA+  ++      + +     Y    D+++
Sbjct: 261 AGIDKHLKVHSTRHTAITLAITGGASIEKVRDFAAHQNIATTNRYVHSIDKLK 313


>gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 389

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 94/266 (35%), Gaps = 19/266 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----S 125
            +Y K    G  A  + + + + +  +           D   +++T   I          
Sbjct: 118 EDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELTPAFISDFEMFLRTD 177

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +    ++   ++  +R +   A+  E++  +P    E  K++       TK++++     
Sbjct: 178 KHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYE-IKKEETTRSFLTKDEIRLLMEG 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
             + ++    R  + F  ++GL  +D      ++++      +        T  + +  +
Sbjct: 237 KLKNAKQELYRDLYLFCAFTGLSFADMRNLTEENIRTYFDEHEWININRQKTGVVSNIRL 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +A   IGK      + +        +     +A A + G+ K  + H  R  +AT I 
Sbjct: 297 LDIANRIIGKYRGLCGDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTIF 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323
              G     + +  G K++   + Y 
Sbjct: 357 LSNGVPIETVSSMLGHKSIKTTQIYA 382


>gi|291297146|ref|YP_003508544.1| integrase family protein [Meiothermus ruber DSM 1279]
 gi|290472105|gb|ADD29524.1| integrase family protein [Meiothermus ruber DSM 1279]
          Length = 387

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 108/373 (28%), Gaps = 43/373 (11%)

Query: 1   MTPSL--RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M+      L   V +      +  +Y  +  G   R    +  +   A   A        
Sbjct: 1   MSKKRTANLQGNVRQRPNGLWECRFYVTEPDGIHRRRVSVYAPSQKEALQKAHEYQVQHS 60

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
             + +   +         E  +  H    A N+R +++      +   GD   +K+T  +
Sbjct: 61  RGLVARPDRRR-FGDFAKEVLE-RHTRGKAPNTRRNYQRELALALEHLGDIPLQKLTPHN 118

Query: 119 IRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIR 172
           +R  ++    KH+P +  + L  +R++ + A+  E +  +P  +V  P+           
Sbjct: 119 LRRMLDRIGEKHSPRTLGKVLERVRLVLREALALELIHRDPSAAVRLPRASERDKAAQHL 178

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-- 230
              +  +    +  S+     L    L+  GLR  ++     + +     +++ ++    
Sbjct: 179 EPPQVRLLLEYAEASKSPTMALLLRVLVQLGLRKGEALGLQWRDVDFKEATLRVERQYTL 238

Query: 231 --------------TIITVELPDGFMKLLAMTPIGKETFFINND----------KQKMNA 266
                             + LP   +  L        +                 + ++ 
Sbjct: 239 QGNKADIGPLKTRAARRVLPLPADLLARLQARYEALCSEGFRPQDLQNAFVFGLDRPLDV 298

Query: 267 TQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              + +      +   +         H +R  +A++    G     +    G  T     
Sbjct: 299 NAPNHFLHRLVERIRADHPEFPEVRIHDLRHTAASLMLARGLDLSLVADKLGHATPSVTL 358

Query: 321 -TYTKGADRIRLG 332
             Y       R  
Sbjct: 359 GVYRHLLQEERRA 371


>gi|211906279|gb|ACJ11657.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 98/347 (28%), Gaps = 57/347 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        +   ++       T       + +          S    +      +
Sbjct: 1   AQELHDKRKAELWRIAKLDDF--PNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWL 54

Query: 104 RKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQ------------------- 135
                   + +T   I         R      K   +SA +                   
Sbjct: 55  LYFSGTRLKDMTEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKA 114

Query: 136 -FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  ++ + K +  +++  I     ++ P  + + IR    ++ ++  +   E    R 
Sbjct: 115 KHLALLKSMMK-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRS 171

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             EF L +GLR S+        +           +  K+G  I V L D    +L     
Sbjct: 172 TVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLG 231

Query: 251 GKETFFINNDKQKMNATQFSI------------WFKAKATKAGVN-KSAHGVRKFSATIS 297
             + +   +      +                  ++A   +AG+     H +R   A+  
Sbjct: 232 NHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWL 291

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +G     L    GW++V+    Y   A       +++++I  V D
Sbjct: 292 IQSGVPLSVLQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|195874183|ref|ZP_03080182.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630408|gb|EDX49034.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 406

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 63  -----SPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRK 167
           I+   I    ++ K       +    +R++     ++           NP L+ ++P+ K
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVLPGYNPALATKQPRNK 216

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   +E    +++   +    +      + +G R  D C    + + +++  ++ +
Sbjct: 217 VTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQE 276

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++ +  + 
Sbjct: 277 KTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTS 336

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    ++G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 337 TFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDT---QKLLGHKSRKMTDKY 390


>gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 84/314 (26%), Gaps = 27/314 (8%)

Query: 42  TFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLIS----EYRKSAHWGSLAVNSR 92
                Y   +       +   R+       K  TL  L      EYRK   + +  V + 
Sbjct: 75  EVNRRYQELMQSDGYVTAAKLRDAYLGIGVKQETLLKLFEQHNVEYRKKVGF-NREVATW 133

Query: 93  ISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRV 142
             +     ++           D   +++    I          +K   ++   ++  ++ 
Sbjct: 134 KKYCCVCKRVREFLAHTYHREDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKH 193

Query: 143 LFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +   A     +  NP               +     + +  +K+     ++ R  F F +
Sbjct: 194 IVAIARNDGRLPFNPFSGYINSPESVDRGYLSQEEIKAVMNYKTANKAHARIRDLFVFSI 253

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           ++GL  +D       +LQ          T    T       +  +    I K      ++
Sbjct: 254 FTGLAYADVKGLTTDNLQTMFDGNLWIITRRKKTNTESRIRLLDIPKRIIEKYADQRLDN 313

Query: 261 KQKMNATQFSI--WFKAKATKAGVN--KSAHGVRKFSATIS-ADAGATAHELMATYGWKT 315
                          +    + G+    + H  R   AT      G     +    G   
Sbjct: 314 HVFYMPCNCHCNDILREIGKQCGIKNKLTFHMARHTFATTITLSQGMPIETVSCLLGHTN 373

Query: 316 VDQAETYTKGADRI 329
           +   + Y K  +  
Sbjct: 374 IKTTQIYAKITNEK 387


>gi|204930834|ref|ZP_03221707.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320293|gb|EDZ05497.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 406

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 63  -----SPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRK 167
           I+   I    ++ K       +    +R++     ++           NP L+ ++P+ K
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNK 216

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   +E    +++   +    +      + +G R  D C    + + +++  ++ +
Sbjct: 217 VTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQE 276

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++ +  + 
Sbjct: 277 KTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTS 336

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    ++G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 337 TFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDT---QKLLGHKSRKMTDKY 390


>gi|169795355|ref|YP_001713148.1| putative integrase/recombinase protein [Acinetobacter baumannii
           AYE]
 gi|169148282|emb|CAM86147.1| putative integrase/recombinase protein [Acinetobacter baumannii
           AYE]
          Length = 339

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 88/328 (26%), Gaps = 29/328 (8%)

Query: 5   LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64
           ++LP  + + +T       Y         R     ++       +A+     K   +   
Sbjct: 1   MKLPKPIKRGQT-------YRITVTYENKRYSCTRDTEKECEQWAAMKLLELKSGKVQEE 53

Query: 65  R--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122
           +  K P   K L  +Y         + +   +     ++I+ +             I   
Sbjct: 54  KGIKTPYPFKMLCEKYYAEKGIKLRSKHVIRNKLDNLERIVGELASKSIYDFKPSDIARW 113

Query: 123 VESR--KHTPSSAIQFLTSMRVLFKWAVR----------QEYVAINPCLSVERPKRKTEG 170
              R  +    + +   +    +F +A +          Q  +      S  +     + 
Sbjct: 114 RNKRVLEVKNGTVLYEFSIFSSIFTYAQKELFLIESNVWQNVIKPEKGKSRSQRITFDDQ 173

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            +   +    +             A  F L + +R  +      + +++    +   K G
Sbjct: 174 EKILQQAKWDKNNPPRFVKHYVCWAMLFALETAMRQGEILGMRREDIKDGFVHLPMTKNG 233

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289
               V L     +LL             +    + A  F   +      A +   + H  
Sbjct: 234 ESRNVPLSKEAKRLL------SLLPSNTDILLPVKAETFKRTWIKIRDAADLKHINFHDT 287

Query: 290 RKFSATISA-DAGATAHELMATYGWKTV 316
           R  + T    +       L    G KT+
Sbjct: 288 RHEAITRMVRERKLPVEVLAKITGHKTI 315


>gi|92117683|ref|YP_577412.1| phage integrase [Nitrobacter hamburgensis X14]
 gi|91800577|gb|ABE62952.1| phage integrase [Nitrobacter hamburgensis X14]
          Length = 363

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 84/317 (26%), Gaps = 36/317 (11%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                +          +  +   KP T+   +++Y       + +   R    +    I+
Sbjct: 33  WKQAQTLARRRMVDYAHSEAGLAKPLTVADAMADYLVYLESKTKSG--REGRYAAEAFIL 90

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--------------------------SSAIQFL 137
              G  +  K+T + I          P                          S+A + L
Sbjct: 91  PAFGKVEVAKLTKEQIDRWHAEMAKAPARIRTKNGRRQRFKTTTDPENDRRRKSTANRIL 150

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           T+ +     A R   V  +       P    +  R       +  +   +     +    
Sbjct: 151 TTFKAALNMAWRDGKVPTDAAWRRVTPFESVDQARIRYLSMDEAKRLLEACSPSFKRLVR 210

Query: 198 FLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
             L +G R  +     V+    +     I+  K+G    V L    +  +     G+   
Sbjct: 211 VALETGARYGELIALRVEDFNADAGTLHIRDSKSGKPRHVVLTPEAVTFVVKVAKGRSPS 270

Query: 256 FI---NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
            +     + +       +   K     A +    + H +R   A+ +   G     +   
Sbjct: 271 SMLLVKENGEPWQRDHQADPLKNACATAKIDPPINFHALRHTWASHAVMRGVALQIVARQ 330

Query: 311 YGWKTVDQA-ETYTKGA 326
            G  T     + Y   A
Sbjct: 331 LGHTTTRVTEQHYAHLA 347


>gi|224024425|ref|ZP_03642791.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
 gi|224017647|gb|EEF75659.1| hypothetical protein BACCOPRO_01149 [Bacteroides coprophilus DSM
           18228]
          Length = 412

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 102/309 (33%), Gaps = 31/309 (10%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRISFESYF 99
              + +  +   R+      K   T   L+  Y                 ++   FE+  
Sbjct: 89  EVDAKMVTADAIRDRYYGRDKVQHT---LLEIYTDHNEKCRALIGKEYTESTVTKFETSI 145

Query: 100 DQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVR 149
           +++           D    ++  + +R      K +     +SA++ L +++ + + A+ 
Sbjct: 146 NRLREFIRFGYHKDDLFLNELDGQFVRDFEYWLKTSIGCQNNSALKHLKNLKKVIRIALA 205

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRC 206
             ++  +P   +   K     +   ++E++ +      E  +    R  F F  Y+GL  
Sbjct: 206 NGWIEKDPFYGI-HFKMDEVNVEFLSQEELDRLMEKDFEIKRLEQVRDVFAFCCYTGLAF 264

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINNDK 261
           +D  +   +HL  +       +     T ++ +        KL+       +    N   
Sbjct: 265 ADVHQLSKEHLVRDNDGNLWIRKARQKTKQMCNIPVISPARKLIDKYSHQPDCIAKNVLL 324

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQ 318
             ++  + + + K  A   G+ K    H  R  +AT+       +   +    G   +  
Sbjct: 325 PVLSNQKMNAYLKEIADICGIQKRLTTHVARHTAATVVFLANEVSMENVAKILGHSNIRM 384

Query: 319 AETYTKGAD 327
            + Y K  D
Sbjct: 385 TQHYAKVLD 393


>gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium]
          Length = 158

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               ++ + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWLWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium]
 gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium]
 gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium]
 gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium]
 gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        KA    AG+NK  S H  R   AT   + G     +    G K V   
Sbjct: 97  HHVDEQVLQKAVKAAIRAAGINKPGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
 gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343]
          Length = 387

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 82/274 (29%), Gaps = 14/274 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +    ++ Y K+     L + +    +S   +         + ++T   +R  +   K T
Sbjct: 103 SFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKT 161

Query: 130 ----PSSAIQFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                S+A + L++++      + K  +  +         ++                + 
Sbjct: 162 LCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGVKRIKSNIDYLTEEELIKFISLY 221

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP 238
             +       +    F F+ ++ L  SD+    ++ + N I  +     +      +++P
Sbjct: 222 YDRRLPERLERTLGFFLFMCFTSLHISDARHVCLEQINNGILTYYRIKNRNCKPEAIKIP 281

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                   +  +  +    +           +   K  A+   + K  SA   R   ATI
Sbjct: 282 LSIPAFKIIEELQGKRKEGHLFTSLQCDQVVNRQIKEIASILEIKKKVSAKTGRHTFATI 341

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                     L    G   + +   Y    D  +
Sbjct: 342 FLKKTKDVATLQKLLGHSNLKETMIYAHVLDESK 375


>gi|321271757|gb|ADW79844.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
          Length = 397

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 16  SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 72

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 73  YRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 132

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 133 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 192

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 193 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 249

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 250 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 286


>gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC
           33277]
          Length = 411

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 21/287 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            ++ K    G    ++   + + +  +           D   +++T   I       +  
Sbjct: 118 EDFFKQVDAGLRCPSTYHKYCTVYKHLEEFIKNRYRVSDIALKELTPAFITDFDIFLRTE 177

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  +      +R +   A    ++  +P +       ++      TK++++Q    
Sbjct: 178 KQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTKDEIRQLLDL 236

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R  + F  ++GL  +D       +LQ +        T    T    +  +
Sbjct: 237 KFRRKSMELARDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIML 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +    I K       +         +     K      G+ K  + H  R   AT I 
Sbjct: 297 LDIPKQIIEKYDGMAKENFLLPVPQYITACKNIKKIIGLCGIEKEITWHTSRHTMATEIC 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
              G     L    G   +   + Y K       R     S ++S +
Sbjct: 357 LTNGVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDKLSKI 403


>gi|307546797|ref|YP_003899276.1| hypothetical protein HELO_4207 [Halomonas elongata DSM 2581]
 gi|307218821|emb|CBV44091.1| hypothetical protein HELO_4207 [Halomonas elongata DSM 2581]
          Length = 396

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 97/346 (28%), Gaps = 44/346 (12%)

Query: 32  RIRLPYPHESTFIPAYMSALTGSTPKREYI--------NSPRKKPTTLK-WLISEYRKS- 81
           R RL        +              E             +     L+   +  Y +S 
Sbjct: 31  RERLKLQPTPANLKKAARHRAAVIDAIEAGHFDYQVTFPRSKNARKFLRGDRLDHYLRSW 90

Query: 82  --AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138
             A   +L  ++   +    + Q+I + G     ++   H+R    +   +       ++
Sbjct: 91  LDAKKPTLKASTYRDYRKTIEGQLIPEFGHLLLAELKRGHVRDWAATLACSNKRIANLVS 150

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR----PWTKEDMQQFKSFWSEGSQPRL 194
            +R     A+  E +  NP       K++    R    P+T ++     +   +  QP L
Sbjct: 151 PLRAALDDAMHDELIHANPLAGWHYRKQEDPRERDELDPFTADEQAAILAACPDAGQPLL 210

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--------GFMKLLA 246
             +F  ++GLR S+        +      +K  +  T  +    +          + LL 
Sbjct: 211 --QFAFWTGLRTSELVALEWGDIDWRRKRLKVSRAITQASKGQAEGPKTTAGARTIDLLP 268

Query: 247 MTPIGKETFFINNDKQKMNATQFSIW---------------FKAKATKAGVN-KSAHGVR 290
                 +     +     +    +                 +     +AGV  +  +  R
Sbjct: 269 RAIEALKAQKAQSYLHPSSRVFLNPRTGDPWTGDQAIRKTLWAHALKRAGVRYRRPYQTR 328

Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
              A++   AG     +    G  +V      Y +           
Sbjct: 329 HTYASMMVSAGEPLAWVSRQMGHTSVVTTARIYAQWIPNAHGAAGA 374


>gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 409

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   S   + S   +++          D  + ++T   I    +
Sbjct: 114 LDMLIKE-KESHIGIDIRKESMAGYHSTRIRLLEFIQKKYKVSDLAFSQLTENFIHEFQQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                     SS     T ++ + + A R+          V+  K   +  +   + + +
Sbjct: 173 YFLGECGFQESSFYNVATHLKTVCRLAYREGVADGLLFDKVKISKGNKKLPKALDRGEFE 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   E         R  F F  Y+G    D       HL  +       K       
Sbjct: 233 KLKTLHFEDLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVR 290
                 +KLL       E    +  +     M    +  + KA   +AG+    + H  R
Sbjct: 291 TSVPCRVKLLPEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGIPFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQK 390


>gi|260855425|ref|YP_003229316.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257754074|dbj|BAI25576.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 405

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 31/360 (8%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKRE--YI 61
            GK+ +Y  +R G GR     RI+L    + +   A   A         G  P+ E  Y 
Sbjct: 36  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKAAREKAAQCRTWLAEGKNPRHEMNYT 95

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                KP T+   ++ + +     +  V+         + +I++ G     K   +H  +
Sbjct: 96  VQEALKPVTVGDALTYWLEYYVKEN-RVDYIALKRRLNNHVIQQIGAMPLDKCELRHWLA 154

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPW 174
             +   K TP +A   L + +   K+  R+ Y   N           ++P      +   
Sbjct: 155 CFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSTK 214

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 215 ELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKTK 274

Query: 235 VELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVR 290
           V +     + +            +              S + +    +    + S H +R
Sbjct: 275 VAIFRPIPEAILPFVTQLVEQNRHTGLLLGAVKQEASVSQYGRLAHRRLNHPHWSLHDIR 334

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           +   T+  D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 335 RTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWMERLGILAGTHE 394


>gi|224369008|ref|YP_002603172.1| predicted bacteriophage P4 integrase [Desulfobacterium
           autotrophicum HRM2]
 gi|223691725|gb|ACN15008.1| predicted bacteriophage P4 integrase [Desulfobacterium
           autotrophicum HRM2]
          Length = 386

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 103/346 (29%), Gaps = 40/346 (11%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPRKKPT 69
            G   +  +     +         + + A            + G   K E +    +  T
Sbjct: 16  SGVWYFQKKVRGLPKPYKFSLDTKSVVEARKKRDEYLLEVKVNGFIQKNEVVVVNPEDGT 75

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
               +  ++        ++ ++   +       I+ + G+     IT   I   V   K 
Sbjct: 76  CFGEIAVQW-AELKKTKVSKSTIQEYRKVMNKYILPQFGNRRIDSITGLEIEVLVSKLKC 134

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    LT  + + ++A + + +  NP   V+  KR++  I P +  +++ F     +
Sbjct: 135 GGKTKNNILTPFKDVMRFAKKHKLIQHNPFDDVDSIKRESSEIHPLSLGEIKLFLEHVPD 194

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ITVE 236
             +P   F FL ++G R  ++     + +      I   KT                TV+
Sbjct: 195 YYRP--LFTFLFFTGARFGEAAALKWKRVDLTNGMIHIAKTYVRGEYKDPKTKGSIRTVK 252

Query: 237 LPDGFMKLLAMTPIGKETFFINND----KQKMNATQFS-IWFKAKATKAGV--------- 282
           L    +  L                    + ++    +   F+    KAG+         
Sbjct: 253 LSPIVIDALHQQREHTMDKSEFVFLNTLGRHIHPHSVNLHVFRPTLEKAGLSANKSFSAA 312

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGA 326
             +S    R    T S D       +    G  T     E Y +  
Sbjct: 313 TRRSCKDTRSSYITNSLDNNERMGFVQKQVGHTTTKMIVEHYYRHL 358


>gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|325299287|ref|YP_004259204.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324318840|gb|ADY36731.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 396

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 80/265 (30%), Gaps = 19/265 (7%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
             +  Y  + IR  G  D  +  IT    T  I     +  H PS     L  ++ L   
Sbjct: 132 KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHKPSYRNHCLCWLKRLVYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           AV    +  NP   ++  K+    +   ++  +Q+  S           R  F F  + G
Sbjct: 192 AVDNGILRYNPLDDIKYEKKAPAKLMYISRNQLQEIMSHPKPDPLQELARRTFIFSCFCG 251

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       H+       K  +T         + F+ L  +       +   +D Q 
Sbjct: 252 LAYVDVRNLYPHHIGTTAEGRKYIRTY--RKKTSVESFIPLHPVAEQIISLYNTTDDSQP 309

Query: 264 MNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +           +  + G       N S H  R    T+   AG     +    G   + 
Sbjct: 310 IFPLPIRSMIWFEIHELGFSLQFKHNLSYHQSRHTFGTLMVSAGVPMESISKMMGHTNIR 369

Query: 318 QAETYTKGADRIRLGIKNSRRISSV 342
             + Y K  D      ++  ++   
Sbjct: 370 TTQGYAKVTDDK--ISEDMNKLIEK 392


>gi|153811766|ref|ZP_01964434.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
 gi|149832169|gb|EDM87254.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174]
          Length = 481

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 110/401 (27%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R+GK  +IY +    G R +    +E+               K+E  +   +K  TL 
Sbjct: 23  RERNGKFNVIYSYTNEKGERKQKWETYETKAEAKRRK--KEIEYKKEMGSFVVRKCKTLD 80

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
            LI+EY       + A+++     S   + I+   GD    +I T+ I    +S      
Sbjct: 81  ELITEYVALYGKENWALSTYEGNVSLINNYILPIIGDTKLSEINTRFIERYYQSLLKRRA 140

Query: 131 ----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+       +R  F+ AV+ E +  NPC     PK K++    W
Sbjct: 141 VINPLNKTSRNEFVSSSTVRDVNKLLRNCFEQAVKWELMEKNPCTHATVPKHKSQKRDIW 200

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T + +        E  + +LA        LR  +        +  +  +I+  +    I 
Sbjct: 201 TADTLMYAL-SVCEDERLKLAINLSFSCSLRLGELLGLTWDCVDISPEAIEENRAYVFIN 259

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K+   +   K     +     F           
Sbjct: 260 KESQRIRKESLNALDGKDVLLVFPTNHKKNSTVRILKTPKTESSVRKIFLPKSVANMLVD 319

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                   K       +     H  R  
Sbjct: 320 WKAEQDEMKEILGDEYMDYNLVMASTFGLPLGDGAIRGPLKKLIEDYNLPPVVFHSFRHS 379

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   V+   + Y+   D  R 
Sbjct: 380 SVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRR 420


>gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium]
          Length = 161

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 2/124 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L+ + +       +      +         T      +  +     +  +       +Q 
Sbjct: 38  LQFARNLHEQDLRINLGRVHLPFALARKYPTAAREWAWQYVFPSKSLSVDPRTDQKARQH 97

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           ++ +     FK    K  + K  S H +R   AT     G     +    G K +     
Sbjct: 98  VSPSSLQKVFKEALRKTRIPKNASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMI 157

Query: 322 YTKG 325
           YT  
Sbjct: 158 YTHV 161


>gi|227878766|ref|ZP_03996677.1| integrase XerC family protein [Lactobacillus crispatus JV-V01]
 gi|262046797|ref|ZP_06019757.1| integrase [Lactobacillus crispatus MV-3A-US]
 gi|227861659|gb|EEJ69267.1| integrase XerC family protein [Lactobacillus crispatus JV-V01]
 gi|260572779|gb|EEX29339.1| integrase [Lactobacillus crispatus MV-3A-US]
          Length = 407

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 113/387 (29%), Gaps = 59/387 (15%)

Query: 11  VTKERTRHGKIIYY--FRKG-HGRRIRLPYPHES---TFIPAYMSALTGSTPKREYINSP 64
           +   + ++G  ++   ++     +                      L      +      
Sbjct: 1   MFIRKLKNGNYVFRESYKNPITNKWHETSCTFGKNNRETRKQAQIILDKRIRTKLIELES 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGV 123
            +   T   L  +Y + A    LA N+    ++  ++I  + G     K +T + I   +
Sbjct: 61  GETDITFAELKDKYLEIAQ-KQLAYNTYYRKKTTLNKISSEWGKDTIAKNVTPQFINKYL 119

Query: 124 ESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------- 171
           ++       +  ++   + + + V+++  ++  Y++ NP   V+   +            
Sbjct: 120 DNMLYGEHPYANATVNSYKSCIGVVYEMGIKYGYISNNPIDKVKISWKSESLKKREEIEN 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
           +     ++++      E  +P L   FE++  +G+RC ++     +++  +         
Sbjct: 180 KYLDDNELERILKDCDERKRPDLKEFFEWMYLTGMRCGEAAAIQKKNILQDKDGTWFARV 239

Query: 227 -----------------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                  +       V LP   + +       K+          
Sbjct: 240 RGSLITIRNEPDPSKRHIKTKNAKTYAGDRDVTLPPEAITIAKNHCEDKKANDFIFTNNW 299

Query: 264 MNATQ------FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
             +         +   K+   +  + K    H  R    +  A+ G   + +    G   
Sbjct: 300 KTSEGYFNNSKLNKVLKSIMKRQKIKKKLVTHIFRHTHVSKLAEMGVPLYVIQQRVGHGD 359

Query: 316 VDQAET-YTKGADRIRLGIKNSRRISS 341
                  Y       ++    + ++ +
Sbjct: 360 SRITRRIYLHIT--KKVKKDLANKLQN 384


>gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82]
 gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82]
          Length = 270

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 9/268 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
              Y +      L+  +R  +    ++ +R     +  K  T   R  +     +P++  
Sbjct: 4   FEGYEEYLKQSELSKQTRQVYLREAEKFVRYLNGKEITKDRTMLYREKLREEDLSPATIN 63

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            ++ ++    ++    +       +  +R        + + +       S      +   
Sbjct: 64  LYVIAVNRYLRYLECGQASIKTLKVQKKRSVENVISRKEYQELLNYAKSSGRK---KYYY 120

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--PDGFMKLLAMTPIGK 252
               L  +G+R S+     V+ L+     +  +     + +         K         
Sbjct: 121 IMRTLALTGIRVSELQYITVETLETGRVQVYNKGKIRDVYLPDVLIRELKKFCREEKEND 180

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMA 309
              F       +N               G+ K     H  R F A    +      EL  
Sbjct: 181 GIIFRGRGGDPINRITVYKMIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELAD 240

Query: 310 TYGWKTVDQAETY-TKGADRIRLGIKNS 336
             G  +++    Y T   +  R  + N 
Sbjct: 241 LLGHTSIETTRIYTTSTVEEKRRKLNNL 268


>gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium]
          Length = 164

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +      G +       +  +     S W K    KAG+ K  +AH +R   AT 
Sbjct: 75  WEWFWVFPAARRGIDPRDGEEKRHHIMEGAVSKWLKNAVGKAGIEKRVTAHVLRHSYATH 134

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G  +V   E YT   
Sbjct: 135 LLQKGVDLRTIQEALGHSSVKTTEIYTHVL 164


>gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926]
 gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 86/297 (28%), Gaps = 45/297 (15%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  Y ++ +       G+F   +I              ++   +E R+   +
Sbjct: 31  KSEKTLKDYMFYLNKFLNFVYEGNGEFHKDEIVRLMTEVEKEDIEDYVYHLIEERELKNT 90

Query: 132 SAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFW 186
           S  + ++S++ L+    +  +   +   P L V R   +      +++      + +   
Sbjct: 91  SVNKIISSLKSLYNELEKHGHENPLKFVPLLKVSRHNFENVLKVSFSEIKEILKKHEVLD 150

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFM 242
            +  + R+    L Y+G+R  +        +         +             L    M
Sbjct: 151 DKSYRNRIIVHTLFYTGMRSQELLNLKYSDIIKREKEYVIKLEKTKSGREQYKALHPECM 210

Query: 243 KLLAMTPIG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287
           + +                             +  +++ +      +        + S H
Sbjct: 211 EKIFSYKKYIKKLYSLSDSQLEEQYIFPSDFLNNTRLSYSSLYTIIQNMGKLIEKDISPH 270

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSRRISSV 342
            +R   AT  +  GA   E+    G       E Y   KG    R       ++ ++
Sbjct: 271 NIRHAVATELSLQGADIMEIRDFLGHADTKVTEVYINAKGLLEKR----AIEKLPAL 323


>gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 338

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 87/303 (28%), Gaps = 49/303 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
           +     R    T+      Y+        +  +   +  +    +        DF   ++
Sbjct: 25  QRKKRNRDSKKTI---FEIYK--------SEKTVKDYMFHLKDFLHFVYDGENDFSISEV 73

Query: 115 TT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                         +I    E RK   +S    L++++ L+K             + + +
Sbjct: 74  IPLMQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFK 133

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH--- 216
             R  E +   + +D+++    +   S    +       L Y+G+R  +      +H   
Sbjct: 134 VNRNIENVLKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLQFKHYLK 193

Query: 217 ---------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINND 260
                    +Q        +     +  +L +    L++M                   D
Sbjct: 194 REDEYFFKLIQTKSGKDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLD 253

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    +   +      G + S H +R   AT  + +GA   E+    G       E
Sbjct: 254 NTPLSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTE 313

Query: 321 TYT 323
            Y 
Sbjct: 314 VYI 316


>gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis]
          Length = 163

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 39/151 (25%), Gaps = 12/151 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           + +   E L  +G+R S+        +  ++  I+          V + +     +    
Sbjct: 1   RDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYM 60

Query: 250 IG-------KETFFINNDKQKMNATQFSIW----FKAKATKAGVNKSAHGVRKFSATISA 298
                                 N +   I          ++     + H +R   AT   
Sbjct: 61  TKARGKLLKNNVSDALFLNHHGNRSAARILEEPEKNRIGSRHKKELTPHTLRHSFATHLL 120

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329
           + GA    +    G   +   + YT      
Sbjct: 121 ENGADLRAVQEMLGHADISTTQIYTHVTKTR 151


>gi|293568955|ref|ZP_06680268.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
 gi|291588388|gb|EFF20223.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium E1071]
          Length = 382

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 104/368 (28%), Gaps = 52/368 (14%)

Query: 5   LRLPPFVTKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           +R    V K+  R     +YF         G+RI+       +   A   A+        
Sbjct: 1   MRRVANVYKDEKRG---TWYFSLTLGYDRFGKRIQPTRRGFKSQKEAK-DAMEELKKNYS 56

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                  +  T +    +Y    +       + +  +    + +   G     KI   HI
Sbjct: 57  DSQEVYLQGITFREFYKKYFFPWYKLGTVEKTYVKTDKTLKRALAYFGKMQMEKIRPIHI 116

Query: 120 RSGVESR-----------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPK 165
           +   +             K  P S          +R++FK AV  E +  NP  ++ + +
Sbjct: 117 QEFQQFLVQECSVTNKEGKIRPLSNNYIKQIFNKLRIIFKRAVVLEVIEENPVDTIGKIR 176

Query: 166 RKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            +   +  WT ++             +    +    FL  +GLR  +        +    
Sbjct: 177 TQRSVVAFWTVDEFKKVYNCSYRCDFQEEFYKRMMRFLFVTGLRSEELFALQWPDIDFRK 236

Query: 222 FSIKTQKTGTIITVELPD-----------------GFMKLLAMTPIGKET------FFIN 258
            +    K+  I T    D                   M+ L      ++T      F   
Sbjct: 237 GTCSVSKSLYIRTRTDYDFSDTKNTSSIRTITLDKQTMEDLREWKESQKTIGDDLGFIFT 296

Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            D    +   F    K  A  AGV     HG+R        +     + +    G  +V 
Sbjct: 297 FDGLPPSPKTFLGRVKKLAEVAGVKPIHLHGLRHSHVAFLIEHNNNIYAVSKRLGHSSVK 356

Query: 318 QA-ETYTK 324
              + Y  
Sbjct: 357 TTLDKYGH 364


>gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5]
 gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5]
          Length = 333

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 71/300 (23%), Gaps = 36/300 (12%)

Query: 77  EYRKSAHWGSLAVNSRIS---FESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129
           ++ +   +  +  ++          F       G       Y +     +    + R  T
Sbjct: 34  KFIEEREFDKIKESTIKEDVLRLRIFLSFCDDIGKIPETMDYHEFKRFFVY-LEKKRGCT 92

Query: 130 PSSAIQFLTSMRVL--------FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             + +++   ++V         F     +           +             K   + 
Sbjct: 93  HQTLVRYYNLLKVFYRLFKFTAFNEFNNECIERKTFSKKSKTRSYDDVNNEIMDKVLDEI 152

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----------- 230
                +  ++  L    L  +G R S+  R            I+   T            
Sbjct: 153 LDGNSATKNRDGLMMLVLWETGCRRSEVIRIKYNDFDFKTGQIRLTDTKNGEDRYVVVSK 212

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--------KAGV 282
               +        +L                +++     S  F+            +AG 
Sbjct: 213 KTTNLIREYSSENILKGPENFIFQSEKGKLGKQVKPGHLSEVFRRAIDNLISKGEIEAGK 272

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS 341
               H +R   A    D G +   +    G   V     Y    +R  ++     +++  
Sbjct: 273 RYVLHSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIYAHAKERTKKMLPDIRKKLDQ 332


>gi|302338517|ref|YP_003803723.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635702|gb|ADK81129.1| integrase family protein [Spirochaeta smaragdinae DSM 11293]
          Length = 413

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/405 (11%), Positives = 114/405 (28%), Gaps = 69/405 (17%)

Query: 10  FVTKERTRHGKIIYYFR--KGHGRR-----IRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           ++   RT   K ++Y++     G+R       + Y  +   + +   A+       E   
Sbjct: 9   YILFPRTLKNKTVWYYQAYGTDGKRLPAKSTGIGYTRKKDEVKSRKEAVAYCQELLEKNR 68

Query: 63  SPRKKPTTLKWLIS-----EYRKSAHWGS-LAVNSR------ISFES-----YFDQIIRK 105
             ++K  TL   +      +YR+S++  + LA +S+       ++ +       D I+  
Sbjct: 69  LSKEKVVTLAQWVESRYFWDYRRSSYVRAILARSSKEKPGITENYCNGATQITRDHILPY 128

Query: 106 SGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            GD    KIT       +    +  +  +A  + +    +     R + +          
Sbjct: 129 HGDKPIEKITPLDCEDLLFKWANQVSHKTANNWKSVYSTILGEYERIQKMRDTTAAYFNP 188

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSDSCRAG 213
            +          +                            A +    +GLR  + C   
Sbjct: 189 WRMVRPLSVDKNRYGALSIDEVEKLLEDSGISSDKDRIYYTAMKVAFMAGLRIGEVCGLF 248

Query: 214 VQHL-----------------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
              +                        + +      K   I  + +     + L     
Sbjct: 249 TDDVIDSEIVRGDKTVTLSYLQISKQYHSKLKKRTPVKDKGIREIPIMPELREELNCYMT 308

Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGA 302
                        +  + A +   W   +  + G+ +     + H  R+F  T+    G 
Sbjct: 309 GPERFVFSHHPRQETPLTANRLREWMYKRMDEMGIEREGRNITFHSARRFFNTLLRHNGV 368

Query: 303 TAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNSRRISSVVDS 345
           +   +    G  + +  + YT     D  ++       ++S   +
Sbjct: 369 SDDVIRKFTGHDSQEMTDHYTDYLPEDLRQIAEAQKNFLTSKAGA 413


>gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 308

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 79/278 (28%), Gaps = 32/278 (11%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV 123
              TLK ++  + K      L   S  + E  +D++I      G+     +T+K      
Sbjct: 15  DRRTLKDVVELWYK------LHGKSLTAGEHVYDKLILMVDALGNPLATDLTSKIFAHYR 68

Query: 124 ESR-------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTE 169
           + R               +P +     + M  +F    R  E+ A NP  ++ +     +
Sbjct: 69  DKRLTGEIYFSEKWKKGASPVTINLEQSYMSGVFSELARLGEWTAPNPLENMRKFTIAEK 128

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +   T E + +        S    L  +  L +G R  ++       +     +    K
Sbjct: 129 EMAWLTHEQITELLYDCKRQSPLLALIVKICLSTGARWREAVNLTRSQVTKYRITFVRTK 188

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                ++ +     + +      K                F    +  +      +  H 
Sbjct: 189 GKKNRSIPISKELYEEIIALDGFKFFSDCYFQ--------FLSVMEKTSIVLPRGQLTHV 240

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   A     +G     L    G   +     Y   A
Sbjct: 241 LRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLA 278


>gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155]
 gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155]
          Length = 311

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 92/294 (31%), Gaps = 34/294 (11%)

Query: 86  SLAVNSRISFESYFDQII------RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQF 136
            L++NS+ S  S    I           D    +I  +    IR+ +   + +  S  + 
Sbjct: 13  RLSINSQRSISSQMRSIARLMQWQEDCLDDKLCQIDYQQALQIRAVMTHAQWSARSINRA 72

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQFKSFWSE 188
           + +++ + K A       ++   +++   +   G            T           + 
Sbjct: 73  MIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQGTPLSTEQVTAVLDYLRAQKGTF 132

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA 246
            ++  + F   L +GLR S+     +     N+ ++     K     T+ LP+   + L 
Sbjct: 133 ATRNLVIFSLFLGTGLRRSELSALMLSDYDANLHTLTVAAGKGNKSRTLFLPEWVEQNLL 192

Query: 247 MTPIGKETFFINNDKQ-----------KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294
                ++        +             + T      K    + GV+  S H +R+   
Sbjct: 193 AWLKLRQRQQGYLVCKSTLTGKLKLTEPTSPTALYRLVKDTLYELGVDNVSPHDLRRTFI 252

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           T   +     + +    G   +     Y K   R    +K +  +   +  D P
Sbjct: 253 TRLLEQNVDINTVRQMAGHADISTTTIYDK---RDHAFMKQAAAMLDYIPPDKP 303


>gi|172058626|ref|YP_001815086.1| integrase family protein [Exiguobacterium sibiricum 255-15]
 gi|171991147|gb|ACB62069.1| integrase family protein [Exiguobacterium sibiricum 255-15]
          Length = 287

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 76/247 (30%), Gaps = 15/247 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
           S +  +R ++          +   D   +        +  + + P++  + + ++  LF 
Sbjct: 18  SYSPLTRKAYRVDARHFCTHAETIDIPSMHRYI---TLLKQTYAPTTVSRRIHALATLFD 74

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
             V ++ +  NP   +++P R     R        +      +       +  LL++GLR
Sbjct: 75  ALVAEKSIPSNPLSRIKKPTRPLPKHRTAFSYTEARSVIETLQDETMYTFYFLLLHTGLR 134

Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND--- 260
            +++ +     +        ++  K      V L D  + +L      +    +  +   
Sbjct: 135 FNEARQLCRTDIDLTERQLFVRHGKGQKTRYVPLHDELVTVLIRYLDLQPNGPLFQNTAG 194

Query: 261 ---KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAGATAHELMATYGWKTV 316
                     Q  +  +    +       H +R   AT    +  A    +M   G    
Sbjct: 195 GLLDPNQTRRQLRLASEQLLKR---TLRPHDLRVTFATTIYREHRADLLTVMRLLGHSDA 251

Query: 317 DQAETYT 323
              + Y 
Sbjct: 252 KTTQQYI 258


>gi|326562759|gb|EGE13057.1| phage integrase [Moraxella catarrhalis 46P47B1]
          Length = 411

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 101/366 (27%), Gaps = 35/366 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDAKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S     I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPTMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
                    +A + L     ++++A  ++        L     + +    +       Q 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNPLEHLHERLEKHEPKQLAHVSEQD 224

Query: 181 ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                   K+  SE ++  +     L+                   I+ I   +      
Sbjct: 225 LHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWAEIDFNKGIWEIPAHRMKKRRP 284

Query: 235 VELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
             +P     + LL                +  +       F+    + G +  ++ HG R
Sbjct: 285 HVVPLSKQALALLQQLHSLTGFDTHLFPSRAKDRKNAHQRFRMALNRLGYHDTQTLHGFR 344

Query: 291 KFSATISA----DAG--ATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISS 341
             ++T       + G       +      K    A  Y K     DR  +    S  +  
Sbjct: 345 HVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWYSDWLDG 404

Query: 342 VVDSDD 347
           +V ++D
Sbjct: 405 LVKAND 410


>gi|211906275|gb|ACJ11655.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 357

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 98/347 (28%), Gaps = 57/347 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        +   ++       T       + +          S    +      +
Sbjct: 1   AQELHDKRKAELWRIAKLDDF--PNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWL 54

Query: 104 RKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQ------------------- 135
                   + +T   I         R      K   +SA +                   
Sbjct: 55  LYFSGTRLKDMTEAKIYSAISKMKNRQQQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKA 114

Query: 136 -FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  ++ + + +  +++  I     ++ P  + + IR    ++ ++  +   E    R 
Sbjct: 115 KHLALLKSMMR-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRS 171

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             EF L +GLR S+        +           +  K+G  I V L D    +L     
Sbjct: 172 TVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACCILTRQLG 231

Query: 251 GKETFFINNDKQKMNATQFSI------------WFKAKATKAGVN-KSAHGVRKFSATIS 297
             + +   +      +                  ++A   +AG+     H +R   A+  
Sbjct: 232 NHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWL 291

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +G     L    GW++V+    Y   A       +++++I  V D
Sbjct: 292 IQSGVPLSVLQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|261492284|ref|ZP_05988847.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312063|gb|EEY13203.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 346

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 103/336 (30%), Gaps = 29/336 (8%)

Query: 7   LPPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
           LP  +   R + G       Y++   +G+   L           Y + L  +  K  + N
Sbjct: 12  LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLGT-------NKYEAVLEAA--KLNFEN 62

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120
           S +        +   Y         A N+R S       + +  G+      KI  KHI 
Sbjct: 63  SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHIS 122

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             ++ RK TP+ A   +     +  W + +E+         +  K+     R    ED  
Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTI--WNMAREWGYTTLPSPSQGVKKFPTKYREVYVEDYI 180

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             K +     +     E     G R  D C     H+ + I  I  QKTG  +  E+   
Sbjct: 181 LDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIYDGILHITQQKTGKKVRFEISGR 240

Query: 241 FMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGV 289
             ++L        +  F N   +K+        FK    +A                  +
Sbjct: 241 LKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRDM 300

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           R  +AT  +       +     G  +      Y + 
Sbjct: 301 RAKAATDISLMTTD-EQAQKQLGHTSKRMTHHYIRK 335


>gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L]
 gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L]
          Length = 285

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 68/258 (26%), Gaps = 14/258 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSS 132
              +           N+   +  +     R           IT   I+  +       + 
Sbjct: 16  FERFLFE---QGKRPNTVHDYSRHICNFHRWLVTEGSSIHDITRYDIQQYINFLSIQGNQ 72

Query: 133 AIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           A       +++    K+  +++ +     L V   +  +       + +    +   S+ 
Sbjct: 73  ATTITPKYSAIVAYMKFVGKEKLLNHIKRLEVRHIRNISPKSLSKKQRNQLLREVEKSQN 132

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245
            +       +LY+G+R  +        ++         I+  K G    + LP      L
Sbjct: 133 LRNIAIVYTMLYTGVRVFELVALNRDDVEMKERSGFIIIRDGKGGISRKIPLPAESRYHL 192

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305
                 +    +                +    + G+   AH +R         +G    
Sbjct: 193 QNYLQKRTDLEVPLFLSNFRKRLSKRSAQRIFEQYGIG--AHMLRHTYGRELVASGIDLA 250

Query: 306 ELMATYGWKTVDQAETYT 323
            +    G   V+  + Y 
Sbjct: 251 TVADLMGHNDVNTTKRYA 268


>gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus
           vaginalis ATCC 49540]
          Length = 292

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 86/262 (32%), Gaps = 22/262 (8%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126
           T+   I  Y  +      + N+R S+    ++        G   ++++    + + +   
Sbjct: 4   TIDHFID-YLMTQ--KGRSQNTRESYRHDLERCAAFFTASGINTWQEVDQYAVINVIAEM 60

Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           K      ++  + ++S+R L+++ +R+  V +NP   ++  +  T        +   +  
Sbjct: 61  KREDRASTTINRTISSLRQLYRYLLRRHEVQVNPMDYIDLEEVATRKAPVTLSQQEIEQL 120

Query: 184 SFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL 237
               +     G + R   E +  +G+  S+        +  ++              V L
Sbjct: 121 FAIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQDNPRHQRIVPL 180

Query: 238 PDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                + LA           +  F+N    +M        FK    K+G+    +   +R
Sbjct: 181 GKIAKEWLARYLRATAGDSSDYVFLNARGGQMTRQGVWKNFKEIVRKSGLSKKITLQTLR 240

Query: 291 KFSATISADAGATAHELMATYG 312
                     GA+   +    G
Sbjct: 241 HTFTADLLKNGASWQAVQTLLG 262


>gi|190150796|ref|YP_001969321.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264085|ref|ZP_07545682.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915927|gb|ACE62179.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870563|gb|EFN02310.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 267

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 78/264 (29%), Gaps = 16/264 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           ++K      LA NS  ++     Q  +   +     +T  +++        ++ P +   
Sbjct: 5   FQKYLSNKDLAKNSISAYLFAVKQFYKLYPN-----VTRGNLKEYKVFLIDRYKPQTVNL 59

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++    ++  ++++      +  +            T     + K            
Sbjct: 60  RLRAINCYLEFIKKEKWKLSFVKVQQKPFLENVISE---TDYYYFKQKLKEDNELYWYFV 116

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMTPIGK 252
             F+  +G R S+  +  V+H+      + ++                    L  T    
Sbjct: 117 IRFMAATGSRVSELIQIKVEHINIGYLDLYSKGGKLRRIYIPQALQQECQIWLKQTNKIS 176

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F+N   +++     +   K  A +  ++      H  R   A    +       L  
Sbjct: 177 GFIFLNKYGERITTRGIAGQLKILAKRYKLDPKVVYPHSFRHRFAKSFLERFNDIAFLAD 236

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G ++++    Y +     +  I
Sbjct: 237 LMGHESIETTRIYLRKTATEQQAI 260


>gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
 gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174]
          Length = 388

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 95/403 (23%), Gaps = 86/403 (21%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           ++       GK  Y               +    +            + + ++       
Sbjct: 2   YIYTYTDPFGKRRY--------------TYSKDLVKLREKEQKLLKDQLDGLDVYAAGNA 47

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV----E 124
            L ++   Y  +     L   +  ++   +D  +    G     +I    +         
Sbjct: 48  NLNFVFDRYISTK--TELRRTTYTNYMYMYDHYVRDSFGKKKIGEIKYSDVLYFYYHLIN 105

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDM 179
            RK   ++     T +   F+ AVR + +  NP         ++P R        T E  
Sbjct: 106 ERKLQVNTLETIHTVLHPTFQLAVRDDIIRNNPSHGVMSEIKKKPGRNHGVRHALTVEQQ 165

Query: 180 QQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTII 233
           + F ++ S           F  LL +G R  +      + +      I    +       
Sbjct: 166 RAFMNYTSNSPVFNHWAPLFTVLLGTGCRIGEIIGIRWEDIDLEKRLININHSVTYYPRR 225

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK------------------------------ 263
                  F   L  T  G  T  +                                    
Sbjct: 226 AETTKCEFAVSLPKTEAGIRTVPMMEPVYNAFMEEYEYQKENGFSTVTLDGMEGFIFTNR 285

Query: 264 ----MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGA 302
                N    +   K                         + S H +R    T   +   
Sbjct: 286 FGNLHNPQAVNRTIKRIRENYNAEEILKAKKEKREPIIIPHFSCHHLRHTFCTRFCENET 345

Query: 303 TAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
               + A  G   ++     Y +  D  +   +   ++S  +D
Sbjct: 346 NIKVIQAVMGHANIETTMDIYAEVTDMKK--TEAIEKLSHNLD 386


>gi|149190496|ref|ZP_01868766.1| phage integrase family protein [Vibrio shilonii AK1]
 gi|148835620|gb|EDL52587.1| phage integrase family protein [Vibrio shilonii AK1]
          Length = 353

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 97/335 (28%), Gaps = 41/335 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
             ++G+I++ F K H +              A+          +        + TT+  L
Sbjct: 24  VKKNGRIVHRFAKTHKK---------KAIATAWAKNQVSEIEIKGLKTQ---RSTTIAEL 71

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH---TP 130
           +  +        L  N+  + +     +      +     +TT  +    + RK     P
Sbjct: 72  LDLFIAE---RDLWDNTGRTKQYVIKMLRDCNIANVQTNSLTTADLIQHCKDRKGAGAKP 128

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-------------------LSVERPKRKTEGI 171
            +    +  +R + K A     +  N                         RP       
Sbjct: 129 VTIYHDIAYLRSVMKKAKPVFNIEANYAVFEEAVPVLIDMKLVGKSERRTRRPTEGELEK 188

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                 + + F+   S         +F + + +R  + C    + L     ++  +    
Sbjct: 189 LKQGLLERENFRPNGSTRIPFIDILDFSVLTCMRIGEICSLRWEDLNQENKTVVVRDRKD 248

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGV 289
               E     + LL  +           D     N    +  F+    + G+ +   H +
Sbjct: 249 PRKKEGNHMIVPLLGESMDIVLRQEQKGDLIFPYNPRSVTAGFQRVRNRLGIEDLRYHDL 308

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
           R+  A+   + G +  E+    G + ++   + YT
Sbjct: 309 RREGASRLFELGYSIEEVAQVTGHRNLNILWQVYT 343


>gi|331083472|ref|ZP_08332584.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404165|gb|EGG83713.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 477

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 107/401 (26%), Gaps = 87/401 (21%)

Query: 15  RTRHGK--IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R+GK  +IY ++   G+R +    +++               K+E      +K  TL 
Sbjct: 19  RERNGKFNVIYNYKDDSGKRRQKWETYDTKAEAKKRK--REIEYKQEMGALVVRKCNTLS 76

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--- 128
            L++EY         A+++           I    G     +I T+ +    +       
Sbjct: 77  DLLTEYVSLYGKEKWALSTYEGNVGLIRNYIEPMVGSVKLSEINTRFMEKYYQGLLQTKA 136

Query: 129 --------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                         + S+  +    +R  F+ A++ E +  NPC     PK K++    W
Sbjct: 137 VGNPVKGNKKNEFVSASTVREIHKLLRNCFEQAIKWEMIEKNPCTYATVPKHKSQKREIW 196

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T E +        E  + +LA        LR  +        +  +  +I+  +    I 
Sbjct: 197 TAETLMYAMDV-CEDERLKLAINLSFSCSLRLGEVLGLTWDCVDISPEAIEENRAYVYIN 255

Query: 235 VELPDGFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWF----------- 273
            E      +          LL      K    +   K     +     F           
Sbjct: 256 KETQRVTKETLKNLEGKDVLLVFPSQHKTNKTVQILKTPKTESSIRKVFLPKSVANMLVE 315

Query: 274 ----------------------------------------KAKATKAGV-NKSAHGVRKF 292
                                                        +  +     H +R  
Sbjct: 316 WKAEQDEVKEVLGEEYIDYNLVMATTFGNPIGTGAIRGQLNKLIEEYNLPPVVFHSLRHS 375

Query: 293 SATI-SADAGATAHELMATYGWKTVDQ-AETYTKGADRIRL 331
           S T      G     +    G   VD   + Y+   D  R 
Sbjct: 376 SVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRR 416


>gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
 gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163]
          Length = 317

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 79/300 (26%), Gaps = 34/300 (11%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T+  L   ++ S  +  +  ++   + +     I    G  +  ++  + +   +  R+ 
Sbjct: 16  TISHLCEAWKLSMRYQ-VKPSTFACYATIIQKHIRPSIGTVEMEEMNNEILSEFILDRQS 74

Query: 129 TPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSV--------ERPKRKTEGIRPWTKE 177
              SA      L  ++ + +   R+      P             +   +    +  +  
Sbjct: 75  RGLSANTMRLILFLLKSIIRAGERRGVSPAEPLDFFLPKDRGYEMKLLSQDNRRKLLSWL 134

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--------SCRAGVQHLQNNIFSIK---- 225
              +                     G++  D          R  V  ++N          
Sbjct: 135 AGCRTNFELGLLLSLSTGIRVGELCGVKWEDVDLEEGVLHIRRTVSRIRNTDQKNTAAKT 194

Query: 226 ------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                  +   +   + LPD  +  L         + +      M        FK    K
Sbjct: 195 VLYIGSPKTGTSQREIPLPDFMIPRLKEKKREAGCYLLTGRTGCMEPRGVQRRFKNLLRK 254

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKNS 336
             +   + H +R   A+   + G  +  L    G  +V      Y      + ++ +   
Sbjct: 255 LRLPDVNIHALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKVYMDQM 314


>gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 345

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 98/311 (31%), Gaps = 35/311 (11%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRK 105
                   T +   + +  KK  TLK    E+ +  H  +    +   ++ +    +  K
Sbjct: 8   AKQLEARLTLRILDMEAFNKKVPTLKRYAEEWFQLPHKMNR--FTLERYKGTMVRHVYPK 65

Query: 106 SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            GD    +I  + ++   +         SS     + +  +F+ A+  E + +NP   + 
Sbjct: 66  LGDHQIDQIKRRDLKVFFDRLLKKGMKESSFQLIKSPLSKIFQHAIDDELIQVNPLSGIS 125

Query: 163 RPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             KR++  I+P+T++    F               F  LL +G+R  +      + +   
Sbjct: 126 HSKRRSIDIKPFTEDQAFLFLEAAKDYRKGVYYPHFLTLLRTGVRIGELLGLQWKDIDFK 185

Query: 221 IFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMTPIGKETF 255
              +  ++                               ++       L    P  +  F
Sbjct: 186 SRELVLKRHIFQTTVMDATKNGQIRTVDMTPHLSETLRALKKEKQINALKFGRPFSEWCF 245

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314
            + N  + M+             KAG+ K   H  R   ATI    G    ++    G  
Sbjct: 246 SLGNKVKPMSMPPIRKAMFEILEKAGLPKMRLHDFRHSYATIRLLKGHDIGDVSYQMGHS 305

Query: 315 TVDQA-ETYTK 324
           ++    + YT 
Sbjct: 306 SIKVTFDIYTH 316


>gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 349

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/330 (10%), Positives = 84/330 (25%), Gaps = 57/330 (17%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT- 129
             ++ +         +  +  ++      + R           +    +   ++ +    
Sbjct: 20  DAVNAFLNHLAGRGFSAATVRAYAFDVANLSRFLVQQAVGLAAVDAPLVFDWIDWQGVRR 79

Query: 130 ---------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+  + + ++R LF++ V       NP  S  R +   +  R  
Sbjct: 80  TDQPTGGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGL 139

Query: 175 TKE-------------------------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                                       +            + R     +L  GLR +++
Sbjct: 140 LGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEA 199

Query: 210 CRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------ 262
               +  +      ++    G     V +   F   LA     +    +   +       
Sbjct: 200 RGLLLADVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRG 259

Query: 263 -----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                 ++       F+     +G  +   H +R    T  + AG     L A  G  + 
Sbjct: 260 PTTGAPVSEAGLRSLFRRHRETSGATRVRPHRLRHTYGTELSAAGIDLLALRALMGHVSP 319

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +    Y       +L  +     +++  + 
Sbjct: 320 ETTARYVH-LSIEQLAAEYGAARATLAGAR 348


>gi|205352422|ref|YP_002226223.1| integrase [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207856607|ref|YP_002243258.1| integrase [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205272203|emb|CAR37061.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708410|emb|CAR32714.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627474|gb|EGE33817.1| putative integrase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 359

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 103/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP  +T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRNLT-YRKASKSFFWR-NPLTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       SL+VN+     +    +  K G+    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 VTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +     +   LA +  L +G R  D        + +N   +   KTG 
Sbjct: 179 RLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GVN      + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KASGVNFSNNPPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354


>gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666]
 gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666]
          Length = 414

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 74/311 (23%), Gaps = 25/311 (8%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESY 98
                  ++   T        +  P  KP     LI E+ +       L+  +  +   +
Sbjct: 87  SPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTDLIDEFARHMQRERGLSPITINNRCWH 146

Query: 99  FDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153
               +             T   + + +  R       +S     T++R  +         
Sbjct: 147 VRAFLTWLAEQHRGAEDATLHQVDAFLSMRGVQGWCRASIATAATALRSFYAHMTATGRC 206

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFK------SFWSEGSQPRLAFEFLLYSGLRCS 207
           A      +E P    +             +      +      + R+    L   GLR  
Sbjct: 207 AEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIASTDTDQPRDIRDRVILMLLAIYGLRRG 266

Query: 208 DSCRAGVQHLQN----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
           +     +  +                       T +   +     ++       +    +
Sbjct: 267 EVVALTLDDIDWERDILHVARPKQRCKHDYPLTTEVGNAILRYVREVRPRCASRRLFLTL 326

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314
                 +          ++    G+       H +R   AT     G +  ++    G +
Sbjct: 327 KAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHR 386

Query: 315 TVDQAETYTKG 325
           +     TY K 
Sbjct: 387 SASATRTYAKV 397


>gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 412

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 79/271 (29%), Gaps = 30/271 (11%)

Query: 82  AHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
                L+ ++ + +    +Q +                  +T   +R    +R+ +P  A
Sbjct: 128 LQERGLSPSTLLHYVPVAEQFLAERFHNAVPSFAMIRATHVTGFVLRH---ARQLSPVRA 184

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK------TEGIRPWTKEDMQQFKSFWS 187
              +T++R  F++   +  +A +    V                    +  ++      S
Sbjct: 185 GLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPAAAVERILECCDRTTS 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFM 242
            G +       L   G+R  +     +  +  +   I  +          +  ++     
Sbjct: 245 VGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALA 304

Query: 243 KLLAMTPIGKETFFINNDKQKM-----NATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294
             L        T  +    +       N++  S   +     AGV   +  AH +R   A
Sbjct: 305 DYLRHDRPRSATRRVFLRHRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLA 364

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T     G +  E+      ++ +    Y K 
Sbjct: 365 TSLLRQGGSLDEIGELLRHQSPNTTAIYAKV 395


>gi|225419809|ref|ZP_03762112.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
 gi|225041550|gb|EEG51796.1| hypothetical protein CLOSTASPAR_06150 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 71/265 (26%), Gaps = 17/265 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RK 127
              +  Y  +         +  S+   +              ITT  IR  +      R 
Sbjct: 77  AEWVRLYLATMVIRGCTEMTVESYRQEYTTFFHTL-KKAIPDITTGDIRGYLAHCKLVRH 135

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           +   +       +R LF W   ++Y+  NP L ++  K +      ++ E +   K    
Sbjct: 136 NKDVTINNKTRMLRGLFTWLTEEDYIDRNPMLRIKDNKVEHRVKEVFSDEHITIIKDAAV 195

Query: 188 EGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL 245
                 +A    L+ +G+R S+        +           K      V         L
Sbjct: 196 RHGPRSIAIVDFLHRTGVRISEMVALDRSDIDFQDRQCIVYGKGRKERPVYFSGDAAVHL 255

Query: 246 AMTPIGKETFFI------NNDKQKMNATQFSIWFKAKA----TKAGVNKSAHGVRKFSAT 295
                 +                ++      +  +         AG+  + H  R+   T
Sbjct: 256 RDYLESRTDNNPALFVGIRKPFNRLTDDAVRLILREIRDMDDRLAGIAINPHKWRRQFVT 315

Query: 296 ISADAGATAHELMATYGWKTVDQAE 320
              +       +    G K ++  +
Sbjct: 316 ELLEKDVPLTLVADLAGHKNLNTTK 340


>gi|293604631|ref|ZP_06687033.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
 gi|292816962|gb|EFF76041.1| phage integrase family site-specific recombinase [Achromobacter
           piechaudii ATCC 43553]
          Length = 322

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 113/334 (33%), Gaps = 37/334 (11%)

Query: 1   MTPSLR---LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M P  +   LP  V +   +HG   +Y + G  R+I        + +  Y   +   T  
Sbjct: 1   MRPRTKDRHLPACVYE---KHG-AFWYVKGGKWRKI---GSDLHSALTEYARIVAAPTDG 53

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117
              +        T                +A ++R  +E     +     DF   ++   
Sbjct: 54  MPALIDEALPVLT--------------KHVAASTRKQYEYCASMLKEDFADFYPGQVKHG 99

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            +   ++      + A + LT ++++F+WA+ +  V  NPC+SV+R  + +        E
Sbjct: 100 DVVEMLDQYADRQALANRMLTVLKLVFQWALDRGRVEANPCVSVKRFVQTSRDRLVTRDE 159

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
             + +++        +   +    +G R  D  +  + HL ++    + QKTG  + VE 
Sbjct: 160 YTRVYEACP---PWLQCVMDLCYLTGQRIGDVLKIELVHLHDDGIYFEQQKTGKRLVVEW 216

Query: 238 PDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVR 290
                   +L                 +  N   +S  ++A    A      + + H +R
Sbjct: 217 TPELRAVSELAKSLHGEAVQKRFLIGARGGNQRLYSYVWRAFKNAAKAAKVTDVNLHDLR 276

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             S T +   G       A  G         Y +
Sbjct: 277 AMSGTAAEAQGIDPT---ALLGHSDTRTTRIYLR 307


>gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36]
 gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492]
 gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36]
          Length = 388

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 95/275 (34%), Gaps = 14/275 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVES 125
           T    + E+ K+     + + +     S   +    +    ++ +T  ++        + 
Sbjct: 104 TFHDFVKEHMKTYS-RRIEMGTFKHHLSCMKKFKAYNELLQFQDLTPDYLTDYLIYMKKE 162

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +T  +A + ++++++    A R+ Y+  NP       + K++      +E MQ  + +
Sbjct: 163 LGNTEITAQRNMSTIKIYVTAAYRKGYIEENPFQEFHIKRIKSDVDYLTEEELMQFVQLY 222

Query: 186 WSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238
           +      +L      F F+ ++ +  +D+    ++ + N+   +     +      +++P
Sbjct: 223 YQRTLPEKLQLTLAFFLFMCFTSMHITDARMFCIEQVNNDVLTYYRVKNRNCKPEPIKIP 282

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
                   +    +        +        +   KA A + G+NK  SA   R   ATI
Sbjct: 283 MPVPAEKLLEEWAEGREEGRLFRNVQCDQVVNRQLKAIAKELGINKKISAKTGRHTFATI 342

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                     L    G   + +   Y    D  + 
Sbjct: 343 YLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377


>gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 175-1]
 gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509]
          Length = 108

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
               +     +  ++ +      KA   KAG+     + H  R   AT    AG     +
Sbjct: 10  CNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTV 69

Query: 308 MATYGWKTVDQAETYTKGADR 328
               G   V   + YT    +
Sbjct: 70  QELLGHNDVKTTQIYTHVLGQ 90


>gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKATVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +     +          ++ +     S   KA A + G+     + H  R  
Sbjct: 70  YPRPVWMFIFPSATLCYLPSIAKRCRRHLLDAAVSQALKAPAPQVGIINKPVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT     G     +    G   V   + YT+  
Sbjct: 130 FATHLLQNGCDIRTVQELLGHTDVKTTQIYTRVL 163


>gi|160946746|ref|ZP_02093949.1| hypothetical protein PEPMIC_00705 [Parvimonas micra ATCC 33270]
 gi|158447130|gb|EDP24125.1| hypothetical protein PEPMIC_00705 [Parvimonas micra ATCC 33270]
          Length = 346

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 15/307 (4%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
           +G++IR    +  T       A+              K   TL+ L   +        + 
Sbjct: 32  NGKQIRRYISYHPTKKD----AMIALADYNANPYDLEKSNITLRQLFDLWYNQKFKKEIN 87

Query: 89  -VNSRI--SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
              ++   S+++ F    +K  +  +  +   H++  +++      +  +  T    L+ 
Sbjct: 88  VEITKNMISYKAAFSH-CKKFQEKPFLDLRATHLQEIIDNCPAGYPTKKKIKTLFNQLYD 146

Query: 146 W-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
           +   +   +       V+         +    E+  +                 L+Y+G 
Sbjct: 147 FARFKNLNIRDKFNELVKVTNDHKARKKIPFSENEIEILWDNVNDKLNLDIALILIYTGF 206

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R S+      +++      IK           +     ++L                 K 
Sbjct: 207 RISELLNIENENVNLKEMYIKGGMKTEAGIDRIVPIHHRILPFIEKRYNENNKYLIVNKF 266

Query: 265 NA-----TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +           +++    +  ++ S H  R  +AT+     A         G    D  
Sbjct: 267 DRKFQYSNFKREFWERWMKEFKMDHSPHETRHTTATLLKKYNADELFRRRILGHAVTDTT 326

Query: 320 ET-YTKG 325
           +  YT  
Sbjct: 327 DKFYTHE 333


>gi|157157376|ref|YP_001464358.1| phage integrase family protein [Escherichia coli E24377A]
 gi|157079406|gb|ABV19114.1| phage integrase family protein [Escherichia coli E24377A]
          Length = 352

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 86/312 (27%), Gaps = 55/312 (17%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS 121
           S +    T   L+ EY  S    +L  ++  S+       +   G+      +T + I+ 
Sbjct: 3   SKKAGKLTWDELLDEYFFS---RNLRPDTEWSYRKVVRGFVDFMGEGVFPADVTQRDIQR 59

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----------NPCLSVERPKR 166
                   +  +  +    +  +R +F + +++  +                   +   +
Sbjct: 60  WRRQVLKTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEASVAKEAKKKKTLNK 119

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-----------YSGLRCSDSCRAGVQ 215
                     +   ++++        R    +             Y+G+R +      ++
Sbjct: 120 DQMIQVYLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRYTGMRFNQLQHIRLK 179

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------------------MTPIG 251
            ++     I+ Q  G+    E     ++ L                              
Sbjct: 180 DVRPGEGVIELQLEGSKTHREWCVPIVEPLKAPLELLLSRARRLGAGPDDFLFDVCRFTD 239

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMAT 310
                               +F+  + + G   SAH  R   ATI  ++     H + + 
Sbjct: 240 CIEPDDYVYCPARAHQAVKGFFRRLSRECGFLVSAHRFRHTLATILMESPERNMHLVKSM 299

Query: 311 YGWKTVDQAETY 322
            G +++     Y
Sbjct: 300 LGHQSIATTMEY 311


>gi|323702858|ref|ZP_08114516.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532116|gb|EGB21997.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 358

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 77/273 (28%), Gaps = 26/273 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH-TPSSA 133
           Y +      L+  +   ++  F   +      G      I    + + V      T  + 
Sbjct: 59  YIEYRKSYGLSRETVEEYKRNFQHFLNYLNVNGITTLNLINQHLLLNYVNQLGFFTHYTR 118

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWS 187
            + L+ ++   ++   Q     +    + + K   +   P T    +             
Sbjct: 119 HRNLSVIKGYLRYLYDQGLTETDFSRVIPKDKYIKQPKLPSTYSKEEVKALLAAIDRSSP 178

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------DGF 241
           +G +           GLR SD C    +++Q     I   +  T + +ELP      +  
Sbjct: 179 KGKRDYAMVLITALLGLRASDVCNLTFENIQWEKNLIVLNQQKTQVRIELPLLSEVGEAI 238

Query: 242 MKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRK 291
           +  L               + +   ++N +           +A +          H +R 
Sbjct: 239 IDYLKYGRPSSELPYIFLHVTSPYDRLNRSTLHSIVCFYLRRADIHYEKQRKHGPHALRH 298

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324
             A +  +       +    G K  +    Y +
Sbjct: 299 SLAGVLLEKKTPLPVISEVLGHKNTESTRLYLR 331


>gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12]
 gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12]
          Length = 152

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 38/133 (28%), Gaps = 9/133 (6%)

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ------FS 270
           +  +  +           V LP   ++ L                +              
Sbjct: 9   IFCSCKNDIHHIHVNKRLVPLPKRTLQALRYYWKPHHHPRYLFPGKDGKPDSLIDKGGIQ 68

Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD- 327
              K    +  ++KS   H +R   AT   + G     + +  G  +++    YT+    
Sbjct: 69  KALKRVIAECNIHKSISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRLTQI 128

Query: 328 RIRLGIKNSRRIS 340
             +  ++   +++
Sbjct: 129 TRKNTVEAINQLA 141


>gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
 gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697]
          Length = 411

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 86/286 (30%), Gaps = 29/286 (10%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYR--KITTKHIRSG 122
            T++  I E  ++      +  +   +++   ++        G  D    ++T + IR+ 
Sbjct: 112 GTMREGIKE-METLAGIDYSPVTINRYKNVVKKLQLLIPSYYGKEDVTFHELTPEFIRAF 170

Query: 123 VESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               K        + ++++   +     A+ +E++  NP    +  ++        T ++
Sbjct: 171 DIYLKTEAGLCRNTIVRYMKCFKKFTNMALAKEWMRKNPFYGYKM-EQDETDPVFLTYDE 229

Query: 179 MQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +Q          +    R  F F  ++GL  SD      ++L  +       + G +   
Sbjct: 230 LQTVMKKKFTIPRLELVRDVFVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLE 289

Query: 236 ELPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                            + +L                  M   + + + K  A    + K
Sbjct: 290 HRRKASSISNIPLLPVPLAILEKYKEHPTCIKKGCCLPVMCNQKMNSYLKEIADFCSIKK 349

Query: 285 --SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + H  R    T           ++    G  +    + Y +  +
Sbjct: 350 NLTTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 260 DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  +  T      K+    AG+    S H  R   AT   +AG     +    G   V 
Sbjct: 95  QRHHIAETALQKAVKSAIRAAGISKPGSCHTFRHSFATHLLEAGYDIRTIQELLGHADVQ 154

Query: 318 QAETYTKGA 326
               YT   
Sbjct: 155 TTMIYTHVL 163


>gi|296393237|ref|YP_003658121.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180384|gb|ADG97290.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 407

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/353 (10%), Positives = 96/353 (27%), Gaps = 28/353 (7%)

Query: 16  TRHGK-IIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            RHG+   +           +            ++  +  +   +     P+    T+  
Sbjct: 46  KRHGRGKRWRANYVDDSGDQKTRAFDTKQEAQKWLDGIMSTL-VQGTYVDPKVASMTVGK 104

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
              ++ +          +  S +++  +I          ++    +++ +   K      
Sbjct: 105 WCDQWIEGYSVHR--SGTVRSAKTHIAKIKESFDTKPLNEVRPSAVKAWLADLKKQGLAD 162

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           S      + +  +   AV    +A NPC     P          T E +           
Sbjct: 163 SYVYALHSRLSQILGDAVYDGVLARNPCSRKTAPPMGKPKCYVATTEQIWGLYEAVPRSI 222

Query: 191 QPRLAFEFLLYSG-LRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGF 241
           +  +             S + R  +  ++      +  +          T + V      
Sbjct: 223 KSAILLGAFAGLRVAEVSGALRTDMDFIKRVFNPARQWEDEPLKTETSATPVPVSEEFVM 282

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATIS 297
           +    + P       +N+  + +   Q     +       V+     + H +R ++A+  
Sbjct: 283 LLSTTILPGEHTHLVVNDHGEPVPPWQIERAIRDARESGLVDLPETFTFHDLRHYNASWL 342

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNSRRISSVVDS 345
             +GA    + A     +     + Y        +  R  +     +S  +D+
Sbjct: 343 IASGADIKTVQARVRHASAKTTLDVYGHLWPDADESSRTAMSAI--LSERIDT 393


>gi|289675986|ref|ZP_06496876.1| Phage integrase [Pseudomonas syringae pv. syringae FF5]
          Length = 393

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 28/295 (9%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115
            R    +P     T+   ++ +        ++ ++   +    + +++   G+    ++ 
Sbjct: 69  PRAAKFAPEANRETVAGFLTRWLDGKK-RHVSSSTFDGYRKIVELRLVPALGEHMMVELI 127

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K +R  + + + +  +     + +R     A  +E + +NP       +++        
Sbjct: 128 RKDVRDWLSTLEISNKTLSNIQSCLRSALTDAAEEELIEVNPLAGWTYSRKEAPAKDDDV 187

Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231
                + +     +   Q R   +F L++GLR S+        +      +   +  T  
Sbjct: 188 DPFSPEEQQAVLAALNGQARNMMQFALWTGLRTSELVALDWGDIDWLREEVMVSRAMTQA 247

Query: 232 -------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------I 271
                           V+L    M  L               +      +++        
Sbjct: 248 AKGQAEVTKTAAGRRAVKLLRPAMVALKAQKAHTFLADAEVFQNPRTLQRWTGDGPIRKT 307

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            +     KAGV  +  +  R   A++   AG     +    G          Y +
Sbjct: 308 MWVPAMKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAKQMGHTDWTMIARVYGR 362


>gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
 gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM
           18228]
          Length = 319

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 80/286 (27%), Gaps = 26/286 (9%)

Query: 67  KPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTK 117
           K  TL  L  ++          S A  +   + +  + I           D   +++   
Sbjct: 23  KQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHSYKREDIPLKELNLT 82

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I          +K   ++   ++  ++ +   A     +  NP         ++     
Sbjct: 83  FINDFEYFLRTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYIN-SPESVDRGY 141

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T+ ++Q       + +     R  F F +++GL  SD        LQ          T 
Sbjct: 142 LTRTEIQTLMDAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTADRLQTFFDGNLWIIT- 200

Query: 231 TIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   +  ++LL +     E +       +     +    +   K    + G     
Sbjct: 201 -RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKEIGRQCGFKVRL 259

Query: 287 --HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 305


>gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    A      +    G   V   + YT   
Sbjct: 130 FATHLLQAERDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|74311839|ref|YP_310258.1| putative phage integrase protein [Shigella sonnei Ss046]
 gi|73855316|gb|AAZ88023.1| putative phage integrase protein [Shigella sonnei Ss046]
          Length = 358

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 104/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPRNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVTQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G+ 
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEI 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   ++  
Sbjct: 175 VTRERLKLKIYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHVRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKFTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|291517045|emb|CBK70661.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 418

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 104/388 (26%), Gaps = 66/388 (17%)

Query: 17  RHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           + G   +     R     + R       T   A                 P  K   LK 
Sbjct: 19  KDGSWEFRREVGRDPATGKRRYVSAKGRTKADARERFDAKVAEMERTGLLPGAKSPYLKD 78

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
               + +     ++   +  +        +   G     ++T  HIR  +        PS
Sbjct: 79  YAERWLEEYRL-NVKPTTYRTRAGRIHACMEVIGCIRLTELTPDHIRQCMRVLSKRLAPS 137

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +      S++++      +E + ++PC  V+ P+ +    R  + +  +Q          
Sbjct: 138 TLKDHFVSLKMMLDQVELEELIPVDPCRRVKPPRVEPTETRILSPDQPKQLIEAVPNRGA 197

Query: 192 PR--------------LAFEFLLYSGLRCS------------------------------ 207
            R              L FE    +G+R                                
Sbjct: 198 KRRGPALTVDVDESWMLLFELAFTAGMREGERYALMPYELEQRDGVPGINVQQQIQQYGK 257

Query: 208 -----DSCRAGVQHLQNNIFSIKTQKTGTIITVE-----LPDGFMKLLAMTPIGKETFFI 257
                       +HL   ++    +       V          + ++  +    ++  F 
Sbjct: 258 PEDAVMPAWLKAEHLYGILWLTTPKTHAAHRFVPISTSLWQRLWARIKRLDIGPRDLIFT 317

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N+    + ++     +      AG+   + H  R ++A+++A A        A  G  ++
Sbjct: 318 NSRGNPVRSSTERYNWNKALKAAGLPPVTIHSARHWTASMTARANMPDDARTAIMGHTSI 377

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
                YT      R     +  +   + 
Sbjct: 378 SMTNHYTH-----RDAASLAALLDRAIP 400


>gi|226356030|ref|YP_002785770.1| phage integrase [Deinococcus deserti VCD115]
 gi|226318020|gb|ACO46016.1| putative phage integrase [Deinococcus deserti VCD115]
          Length = 387

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 94/366 (25%), Gaps = 56/366 (15%)

Query: 19  GKIIYYFRKG--------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           G   Y F+            +R+   +      + A+M  +      +     P     T
Sbjct: 16  GSNRYKFQYRIWAELPDESRKRLTGRFSGTEKELRAFMQKVKLEAKGQGVSADPG---MT 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           +  LI E+        ++  +   +   +   I  + G    R +    ++      +  
Sbjct: 73  VNTLIEEWLD-GKAQEVSARTASIYRGVFLRHIRPRIGGTKVRALDAARLKGFYTDLRRD 131

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
                + +Q    +R     AV    +  NP   V     K                +  
Sbjct: 132 TDLERTRVQIHLVLRQALDHAVLTGVILSNPAKVVRPATAKAVRREALADAGDVPAWTHE 191

Query: 187 SEGSQPRLAFEFL----------LYSGLRCSDSCRAGVQHL----------------QNN 220
                  +A E            L +GLR  +        +                  +
Sbjct: 192 EASKLFAVAMEDRSPFGWAVALGLQTGLRRGELLGLKWSAVDLAGKTLKVVGNLTENDGH 251

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK------------QKMNATQ 268
                 +   +   V L +  +++L      ++                    +  + + 
Sbjct: 252 RAVGNPKTRESRRVVPLSEEAVRVLKAVREWRDLESTRPGWGGTDFVFPTVDGKMQHPSN 311

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
            +   KA  TKAGV   S H  R    T+ A  G +   +    G KT       Y+   
Sbjct: 312 INRKVKALTTKAGVRYLSMHATRHTFVTLLAATGVSLQHISKLIGHKTPLVTMTVYSHVF 371

Query: 327 DRIRLG 332
                 
Sbjct: 372 KEEVAA 377


>gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium]
          Length = 162

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 2/128 (1%)

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            +G       +      +   ++               +   + L  + I +        
Sbjct: 35  LTGEIERVERQWKKDVTRGGGYAPIPDAIFHKRPRAGHELPFQYLFSSTILRRDEAGRGT 94

Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +  ++ +           +AG+ K  + H  R   AT   ++G    ++ +  G  ++  
Sbjct: 95  RWHIHPSSVDRVVYGAGRRAGIGKRVTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKT 154

Query: 319 AETYTKGA 326
              YT   
Sbjct: 155 TMIYTHVL 162


>gi|329115528|ref|ZP_08244263.1| Prophage DLP12 integrase [Acetobacter pomorum DM001]
 gi|326695148|gb|EGE46854.1| Prophage DLP12 integrase [Acetobacter pomorum DM001]
          Length = 261

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 72/237 (30%), Gaps = 13/237 (5%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155
              +    GD     IT    +     R       S+A   L ++R   +WAVR+E V+ 
Sbjct: 15  LKPLKVFFGDKPPEIITPDSCKRYTAFRLDQGVQISTARTELGTLRAAMRWAVREEIVSK 74

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                 + P R     R  T+ +  +           RL     L++  R S        
Sbjct: 75  --APRTKLPPRPDARQRWLTRSEAAE-LVDGCVAHHIRLFVLLALHTAARKSHILTLTWS 131

Query: 216 HLQNNIFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW- 272
            +      I  +      T            L                 +    Q S   
Sbjct: 132 RVDLQARIIDFRDPAKPRTKKGRARVPINDTLYEALKEAYELRETEFVVEWAGDQVSSIK 191

Query: 273 --FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
             F+A A +A ++  + H +R  +AT  A AG +  ++    G   +    ETY   
Sbjct: 192 TGFRAAAKRADLSGITPHTLRHTAATWMAQAGISLWDIAGYLGHSNIKMVEETYAHH 248


>gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 354

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/291 (9%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PSSAI 134
           +    +  ++   ++ +   ++         +  ++I  + I   + S        S   
Sbjct: 62  AKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 135 QFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
             +  +              + ++      +          +     ++E++++F     
Sbjct: 122 YRIAVINFFVFLDKQNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    +  +         +         +    
Sbjct: 182 NADFKNNTIRNKLIIKIIIFTGIRVSEAINIKIGDISEENDLYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          ++        N     +  +  S   +    +AG+ K    AH +R
Sbjct: 242 KELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
              AT+          +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 352


>gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 9/146 (6%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT---- 248
             FEF+  +G R  +  +     +       I   K      V         L       
Sbjct: 4   ALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDER 63

Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                         K++M+        K  + +AG+ K    H +R   AT   + GA  
Sbjct: 64  EDDDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMINNGAPI 123

Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330
             + +  G +  +  + Y + + ++R
Sbjct: 124 DVIQSLLGHEKSETTKIYAQLSGKLR 149


>gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459]
 gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 309

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 81/291 (27%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKH 118
            + ++K  T      E+      G++   +   +   E    +++ +    D  + T + 
Sbjct: 2   KAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQQ 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWT 175
           + +         ++          +          +       +  + P+ K        
Sbjct: 62  LLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQN 219
           +  +   +    E          ++ +GLR S+                S      +   
Sbjct: 122 EVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMV 181

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 T+   +   +++        +     K++      K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
 gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium
           autotrophicum HRM2]
          Length = 337

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 89/316 (28%), Gaps = 42/316 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT---------TKH 118
           L   +S Y       + + N+  S+   F  ++R      D    K+          T  
Sbjct: 10  LTEFLSVYL--PRQKNASKNTIASYRDTFKLLLRFCLEQKDIPVEKLNMSMLSHVIITDF 67

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           +    E RK   ++  Q L ++   F++A  +E   I     +     K           
Sbjct: 68  LEWLEEERKCCIATRNQRLAAIHSFFRYAQYEEPSGILHFQKIIALPIKKAPKPSVPHLT 127

Query: 179 MQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--------- 222
            +  K          ++G +       L  SG R  +     ++++  +           
Sbjct: 128 PETMKLLLSQPDKMTAKGRRDITLLSVLYDSGCRVQELIDLKIRNVILDNPAVLILTGKG 187

Query: 223 --SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF------- 273
               +       + +         L          FIN  + K+     +          
Sbjct: 188 NKIRRVPLMRNTLVLLQNYLQEHSLDKDWKRDYPLFINKQRNKLTKEGIAYIISQYVGPA 247

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332
           K  +       + H  R   A     A      +    G + V   E Y K  ++  R  
Sbjct: 248 KRMSASMPKKVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSELKRQA 307

Query: 333 IKNSRRISSVVDSDDP 348
           I  +     +VD++ P
Sbjct: 308 I--ANAYPDIVDNNLP 321


>gi|61106482|gb|AAX39006.1| int-OPT [synthetic construct]
          Length = 386

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 100/344 (29%), Gaps = 31/344 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G G R   P+  ++            +   R      R    T         + +    +
Sbjct: 35  GGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTWLDDRAAGETFGNYARAILRDSPKIGV 94

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
               R + E      +        R++T   +R             +S  Q    +R++ 
Sbjct: 95  --RWRETCERNLRLHLVPLVTVPLREVTASRVREWHAAALRGSGGRTSISQSYRFLRMVM 152

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             AVR+  +A +PC        +       T   +           + R A     + GL
Sbjct: 153 NTAVREGIIARSPCQIPGAGTVRAAERPVATPAQVVALVEA--INPRYRTAVLIAAWCGL 210

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----------------------ELPDGFM 242
           R  +     V  +     +I  +K                                   +
Sbjct: 211 RRGEIAGLRVADVDLTEHTITVRKARVEPLHDRGKAFDKDPKSEAGKRTIAIPPHVVPVI 270

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
           +L      GK+  F++ D   +        F     K G++  + H +R    T++A  G
Sbjct: 271 RLHLDEFAGKDRLFVSRDGSPLRGDTLYQAFVRARGKVGLDTLTFHDLRHTGQTLAAQTG 330

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
           AT  +LM   G  ++  A  Y    D R R   K    +++  D
Sbjct: 331 ATLADLMKRLGHSSMAAARRYLHAVDGRDREIAKALSELAAHGD 374


>gi|238025784|ref|YP_002910015.1| Site-specific recombinase, phage integrase family protein
           [Burkholderia glumae BGR1]
 gi|237874978|gb|ACR27311.1| Site-specific recombinase, phage integrase family protein
           [Burkholderia glumae BGR1]
          Length = 358

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 81/334 (24%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R       Y      G          S    A                   K   T   
Sbjct: 5   KRKTSPNWQYKLYPPGGGAPVQGSTGTSNKEQAQEFHDRLKVELWNQARLGIKPRYTWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
            +  Y            S  + +++   + R         I    I +   +++  P   
Sbjct: 65  AVVRYVTEREGLP----SLETSKTHLRWLDRHLAGVALADIDRDRIDAIALAKRREPLTV 120

Query: 131 ---------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           +  + +  ++ +   AV  E++   P  +  +   K        
Sbjct: 121 RTKQGPVAIERTASIGTVRRVVGVLKAVLNAAVEWEWIDRAPVTARAKLPEKRIRWLTLD 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL+ S           +   +   +    
Sbjct: 181 QAERLLAELPDHLAEMARFSLETGLRRSNVTGLQWSQVDIVRRVAWIHPDQAKAKKAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++       ++  A          +   +        +  +     + G+     H +R
Sbjct: 241 PLSDTAIAVLLRQRAAKRAPAFVDSVFVYRGTPVYQTSTAAWHKALARCGIREFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
 gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787]
          Length = 425

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 97/380 (25%), Gaps = 51/380 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     G+  + +        ++P         +    +       +       K 
Sbjct: 29  RYAYKYIDTFGETQFVYSWKLVPTDKVPAGKRPCL--SLREKIKQIQKDLDDGIDTIGKK 86

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L  +Y  +   G++   ++ S +     +   K G      +     +      +
Sbjct: 87  MTVCQLYEKY--TRQRGNVRKGTQKSRQQLMKLLSEDKLGAASIDSVKLSDAKEWALRMQ 144

Query: 128 HTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF 182
               +         S++ +F  AV+ + +  NP      E     T    P T     + 
Sbjct: 145 EKGVAYNTICNSKRSLKAIFYMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPTQENEL 204

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             F        +       LL +GLR S+ C      L      +               
Sbjct: 205 LDFMQNDPVYAKYYDEVVILLETGLRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYY 264

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFS 270
                         ++    + F ++L     G+                     A  + 
Sbjct: 265 IEAPKTESGFRQVPMSAAAYEAFERVLKKRRDGRCIEVDGYKDFLFLNRDGLPKTAVNYD 324

Query: 271 IWFKAKATKAG------VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK  A K        +    + H +R    T  A+AG     L    G   +     Y
Sbjct: 325 AMFKCLAKKYNKCHKEPLPDVMTPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384

Query: 323 TKGADRIRLGIKNSRRISSV 342
              A       +   R+ + 
Sbjct: 385 YAHATF-HSAQEEMERLQAK 403


>gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
 gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 99/331 (29%), Gaps = 59/331 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------------F 109
           R+   TL     +Y ++    S +  +RI++            +                
Sbjct: 29  REVLKTLPPFAKDYFRAMEPKS-SAKTRINYAYDIRVFFHFLLENNPIYKNYTMDQFRVQ 87

Query: 110 DYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
           D  +I    I   +E  K           +      + ++++R  + +  + +Y+A NP 
Sbjct: 88  DLERIEPVDIEEYMEYLKVYKREDNEMITNGERGLKRKMSALRSFYSYYFKHQYIATNPT 147

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFK----------------SFWSEGSQPRLAFEFLLYS 202
           L V+ PK   + I     +++                     +    ++       LL +
Sbjct: 148 LLVDMPKLHDKAIIRLDIDEVAMLLDYVESAGEHLTGQALAYYQKTKNRDLAILTLLLGT 207

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------VELPDGFMKLLAMTPI 250
           G+R S+     +  +      I   + G                    +   K++     
Sbjct: 208 GIRVSECVGLNLTDVDFKNNGITVTRKGGSQMVVYFGDEVADALENYIEADRKVITPLSG 267

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELM 308
            +E  F++  +++M         K  A +       + H +R    T         + + 
Sbjct: 268 HEEALFLSTQRKRMGVQAIENMVKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVA 327

Query: 309 ATYGWKTVDQA-ETYTKG-ADRIRLGIKNSR 337
              G K V+   + Y     DR R+     +
Sbjct: 328 DVLGHKDVNTTKKHYAAIDEDRRRMAASAVK 358


>gi|211906283|gb|ACJ11659.1| integrase [Candidatus Hamiltonella defensa]
          Length = 357

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 98/347 (28%), Gaps = 57/347 (16%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
                        +   ++       T       + +          S    +      +
Sbjct: 1   AQELHDKRKAELWRIAKLDDF--PNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWL 54

Query: 104 RKSGDFDYRKITTKHI---------RSGVESRKHTPSSAIQ------------------- 135
                   + IT   I         R      K   +SA +                   
Sbjct: 55  LYFSGTRLKDITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKA 114

Query: 136 -FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  ++ + + +  +++  I     ++ P  + + IR    ++ ++  +   E    R 
Sbjct: 115 KHLALLKSMMR-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRS 171

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             EF L +GLR S+        +           +  K+G  I V L D   + L     
Sbjct: 172 TVEFALATGLRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACRTLTRQLG 231

Query: 251 GKETFFINNDKQKMNATQFSI------------WFKAKATKAGVN-KSAHGVRKFSATIS 297
             + +   +      +                  ++A   +AG+     H +R   A+  
Sbjct: 232 NHQKWVFVHTMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWL 291

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
             +G     L    GW++V+    Y   A       +++++I  V D
Sbjct: 292 IQSGVPLSVLQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|300172888|ref|YP_003772053.1| prophage integrase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887266|emb|CBL91234.1| prophage Lp3 protein 1, integrase, putative [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 373

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 112/365 (30%), Gaps = 43/365 (11%)

Query: 11  VTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAY--MSALTGSTPKREYINSP 64
           V K  T  GK      Y    G   R++            +     +     +  Y    
Sbjct: 3   VQKIETSKGKTWEVDGYLINGGQKVRVKKRGFDSKRTAQQWFNNETVLFDNGESRYNKKT 62

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123
                T+K L   + ++    S+  ++     + F   ++    D     I    ++  +
Sbjct: 63  TPNNMTVKELYDIWLETYQ-HSVEESTLGKTMTIFRLHVLPTWRDTLLTDIKPLDLQRYI 121

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            + +       +     R L   AV+ + +A+NP   ++ P+ +    +P    D+ +FK
Sbjct: 122 NTLQRDMQMYKKVTGYFRRLLDVAVKMDVIAVNPFTKIDLPRERKVINKPKQFMDVDEFK 181

Query: 184 --------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------- 221
                    +     Q         ++G+R  +      +H+  +               
Sbjct: 182 AFIAVLDSRYSQINLQAYTLLRLGAFTGMRTEELLALQWRHIDFDNGYVSITQALGRGLG 241

Query: 222 ---FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WF 273
              +  + +   +  T+++ +  + +++      +    +N                 W 
Sbjct: 242 GSTYIKEPKSRTSKRTLKIDNKMLSVMSSWYDTTKYNRDDNFVFTHGGHTLQPLRPNKWL 301

Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330
              + + GV    S H +R   AT++ D GAT  ++    G          Y+      R
Sbjct: 302 HDVSDRYGVAVGLSMHKLRHTWATLALDQGATVKQVQTYLGHADASITLNVYSDIT--KR 359

Query: 331 LGIKN 335
              + 
Sbjct: 360 ASDEA 364


>gi|303255427|ref|ZP_07341491.1| integrase [Streptococcus pneumoniae BS455]
 gi|303259309|ref|ZP_07345287.1| integrase [Streptococcus pneumoniae SP-BS293]
 gi|303261065|ref|ZP_07347014.1| integrase [Streptococcus pneumoniae SP14-BS292]
 gi|303263393|ref|ZP_07349316.1| integrase [Streptococcus pneumoniae BS397]
 gi|303265558|ref|ZP_07351458.1| integrase [Streptococcus pneumoniae BS457]
 gi|303267884|ref|ZP_07353686.1| integrase [Streptococcus pneumoniae BS458]
 gi|302597567|gb|EFL64649.1| integrase [Streptococcus pneumoniae BS455]
 gi|302637902|gb|EFL68388.1| integrase [Streptococcus pneumoniae SP14-BS292]
 gi|302639727|gb|EFL70184.1| integrase [Streptococcus pneumoniae SP-BS293]
 gi|302642580|gb|EFL72925.1| integrase [Streptococcus pneumoniae BS458]
 gi|302644998|gb|EFL75245.1| integrase [Streptococcus pneumoniae BS457]
 gi|302647166|gb|EFL77390.1| integrase [Streptococcus pneumoniae BS397]
          Length = 382

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGLTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSTLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGRSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIIPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|294785103|ref|ZP_06750391.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27]
 gi|294486817|gb|EFG34179.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27]
          Length = 351

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 103/322 (31%), Gaps = 19/322 (5%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             +R  L Y         Y  A   S       NS      T + +   + ++     + 
Sbjct: 35  KYKRSALGYYSTLEEAQMYKIAY-FSNNINLLKNSNDIDSLTFEEVYKLWLEN---KDVK 90

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-- 146
            ++  ++ + F++            I+   +++ +     T  S     +    ++ +  
Sbjct: 91  KSTMKNYVTNFNR-SSILHKMQMNTISGLFLQNIINKANLTKGSLRNLKSFWANIWDFAL 149

Query: 147 ----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLY 201
                 ++ Y  +    S+ER  + +   R +T E+++   +   +  +  +     L Y
Sbjct: 150 LNDLCSKKNYPKLLKLPSIERGNKTSIRERIFTDEELEILWNNLYKDKRKIVDIVLILCY 209

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPIGKETFFI 257
           +GLR  +     ++ +     +I    + T+  +       KLL         G E  F 
Sbjct: 210 TGLRIGELLNIKIKDIDLKEKTINITNSKTVNGIRTIPIHDKLLPLISNRMYKGNEYLFT 269

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             D +      F   F+       +   + H  R   AT+  +A      ++   G K  
Sbjct: 270 TLDNKHYKYDSFDNHFRILCKNLKLKYHTLHDTRHTFATLLVNAKVNKEVIIKMIGHKRY 329

Query: 317 DQA-ETYTKG-ADRIRLGIKNS 336
               + Y     D ++  I   
Sbjct: 330 KTTLDIYVHKNYDDMKRAINQI 351


>gi|205357416|ref|ZP_03223734.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205321837|gb|EDZ09676.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|320086320|emb|CBY96093.1| Integrase [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 406

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GKI + ++     R       E         A T    +R         
Sbjct: 39  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 98

Query: 63  -----SPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 99  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 158

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRK 167
           I+   I    ++ K       +    +R++     ++           NP L+ ++P+ +
Sbjct: 159 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNR 216

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   +E    +++   +    +      + +G R  D C    + + +++  ++ +
Sbjct: 217 VTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQE 276

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++ +  + 
Sbjct: 277 KTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTS 336

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    ++G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 337 TFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDT---QKLLGHKSRKMTDKY 390


>gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
 gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136]
          Length = 285

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 20  VTKFKNYLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     +     + E    
Sbjct: 75  VNLRLQGINKFLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKARLKADGYEE---W 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H++     + ++           +      K L    
Sbjct: 132 YFIVWFMAATGARVSELLHIKAEHIKVGYLDLYSKGGKIRRLYIPKNLRTEAEKWLKSQG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 192 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 251

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 252 LADLMGHESIETTRIYLRR 270


>gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
 gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf]
          Length = 212

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
               S  + LTS+  LFK       V        ++    T      T++++++      
Sbjct: 1   MKAKSINRKLTSINQLFKSININYGVKCKRMKEQKQ----TFLDDVLTRDEIEKMLKKCG 56

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKL 244
              + +     L  +GLR S+  +  ++ ++     I+ +        +  EL + +++ 
Sbjct: 57  TNIRDKAIIMTLYKTGLRVSELLQLRIRDIRKKSIEIEGKGGKYRYIIVPKELKEIWLQY 116

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
           L +    +          +M+    +   K  A +A + K     H +R       A   
Sbjct: 117 LKVRKPVETDKLFVGTNGEMHRHNINRIIKKYAVQARITKGKAHPHALRHSFCKALAIQN 176

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
                +    G + ++    YT+   + 
Sbjct: 177 VGIEVIADLAGHEDLNTTRIYTRQTQKE 204


>gi|74317697|ref|YP_315437.1| phage integrase family site specific recombinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057192|gb|AAZ97632.1| site-specific recombinase, phage integrase family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 356

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 102/355 (28%), Gaps = 29/355 (8%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-- 59
           T   R    V K   R G+  Y  +   G    +          A+  +   ++      
Sbjct: 13  TAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRDSKKAASVIDPDF 72

Query: 60  ------YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  I       ++L WL++ Y      G  +  S         +            
Sbjct: 73  KRVLESRIKKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKRYR--IAGLSIYT 130

Query: 114 ITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTE 169
           I+   +   +   K    +     ++   +  +F  A ++  +   NP  S+E P     
Sbjct: 131 ISADDVAEFLGDLKADGVASPGQRKYCALLSHVFNTAAKRWRLKVSNPITSLELPAGGKA 190

Query: 170 GIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KT 226
             R     +          E +         + + +R  +        +         + 
Sbjct: 191 RDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVDLKNRVAELRD 250

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
            K G    V L    +K+L   P   +   +      + A+     +     K G+ +  
Sbjct: 251 TKNGEGRRVPLSRAAIKVLRALPRPHKGPVL-----PIGASALRGAWGRAKEKVGIKDLR 305

Query: 286 AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            H +R  + +   + G   + E+ +  G KT+   + YT            ++++
Sbjct: 306 IHDLRHEATSRLFEKGVFDSMEVASITGHKTLQMLKRYTHL-----RAEDLAKKL 355


>gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B]
 gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 89/283 (31%), Gaps = 27/283 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHT 129
           +  Y           +S  S++   +  I+ SG  +  Y  I   ++             
Sbjct: 10  VRRYMSQLR-EEKRYSSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLENDCM 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE 188
            ++   ++  +R ++  AV        P L            +   + E+  +  +   E
Sbjct: 69  RNTVSTYIRRLRCIYNKAVENGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMTVKVE 128

Query: 189 GSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
               R    +      Y+G+   D      ++++N I     QKTGT +           
Sbjct: 129 SEVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLEILDTAELM 188

Query: 235 ----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               +         L     G +T +    +     ++F+   KA    AG+  + +++ 
Sbjct: 189 RKELMGDKKPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGIVSDVTSYT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A    +       +    G K++   + Y +     ++
Sbjct: 249 IRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKM 291


>gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910]
 gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910]
          Length = 416

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 80/272 (29%), Gaps = 18/272 (6%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKH- 128
            +++K       +  +   + + ++ +           D  +R++    IR      ++ 
Sbjct: 122 EQFKKLVEKEERSEGTYNKYITVYNHLSNFIELRYHRDDMAFRELNNDFIREFDFYLRYD 181

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              + ++   +   +  L + A+++  +   P    E    +T+      ++  +   S 
Sbjct: 182 LQLSHNTIWVYTMPVLALAELAIKKGLIRDYPFEDYEISMEETDRGYILKEDVEKLMLSK 241

Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    +  F F  ++GL  +D  +    ++Q+     +   +    +    +  + 
Sbjct: 242 PPHKRYEVVKDLFIFSCFTGLAYADIKKLKRSNIQSFFDGHQWIISRRKKSDVASNVRLM 301

Query: 244 LLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATIS 297
            +    I K                   +         A +      + H  R    T+ 
Sbjct: 302 DIPKRIIEKYIGTTRNEFIFPIPTNATCNKHVAKLIENAEIITEQKVTFHTARHTFGTMF 361

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K +   + Y K   + 
Sbjct: 362 LTEGVPLESLSKMMGHKNISTTQIYAKITSQK 393


>gi|218701013|ref|YP_002408642.1| putative integrase [Escherichia coli IAI39]
 gi|218370999|emb|CAR18827.1| putative integrase [Escherichia coli IAI39]
          Length = 416

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQGFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAYMLQQWADMIDSWIDGEH 398


>gi|197104884|ref|YP_002130261.1| integrase/recombinase, phage integrase [Phenylobacterium zucineum
           HLK1]
 gi|196478304|gb|ACG77832.1| integrase/recombinase, phage integrase [Phenylobacterium zucineum
           HLK1]
          Length = 394

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 112/377 (29%), Gaps = 44/377 (11%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP--------- 56
           +    T  G I + +    +GRR  L      P   +   A    L              
Sbjct: 1   MYVHVTTSGSITFRYDYRLNGRRETLTIGKYGPSGLSLARAREKCLDARRAVAEGLSPAQ 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           +++       +  +       + K A    +A ++R    S F++ ++    +    +IT
Sbjct: 61  EKQREKRRVLEAKSFGEFGERWFKEA---PMADSTRAMRRSIFERDLLPAFRNRLLSEIT 117

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGI 171
              +R+     K    P++AI     ++ ++ +A+       NP                
Sbjct: 118 PDDLRALCAKIKGRGAPATAIHVRDILKQIYGFAILHGEKIRNPADEVGPASIATFVAKD 177

Query: 172 RPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           R  +  +++               RL  + +L + +R S+   A    +          K
Sbjct: 178 RALSPTEIRIMLKQLEHVPTLPTIRLGLKLILLTMVRKSELQDATWDEVDFENAVWSIPK 237

Query: 229 TGTIITVELP----DGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAK 276
                +        +  + +L                 +  +    +    + +     +
Sbjct: 238 ERMKRSKAHNVYLSEQSLDILIALKTCAGNSRFLLPSRYDADAPMSRATFNRITTAVAER 297

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA---DRI 329
           A K G+     + H +R+  +T+  + G     +      +    +   Y K      R 
Sbjct: 298 AKKEGLPLEPFTVHDLRRTGSTLLNELGFNRDWIEKALAHEDSRSSRGVYNKAEYEPQRR 357

Query: 330 RLGIKNSRRISSVVDSD 346
            +  + +  + + VD  
Sbjct: 358 HMLQEWADMVDAWVDGR 374


>gi|326562523|gb|EGE12840.1| integrase [Moraxella catarrhalis 103P14B1]
          Length = 421

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 102/363 (28%), Gaps = 48/363 (13%)

Query: 20  KIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPT- 69
           K     +K  GR  R  L    + T   A   A         G  P  +     +     
Sbjct: 42  KTYIVEKKVKGRAVRHTLGIVGQMTLAQARQKASETLALMGQGINPNEQKRQEQKAYEQE 101

Query: 70  --------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                   TL    + ++      SL  N+   ++      +     +    I  K I+ 
Sbjct: 102 RELHRYHPTLSDAYTAFKAE---RSLKPNTLRDYDKVMSVYLATWQVYKLGDINRKMIQE 158

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQE----------YVAINPCLSVERPKRKTEG 170
             +   K +P+ A   +   R ++ +AV              +A    L+ ++     + 
Sbjct: 159 KHKELTKISPAQANMVMRVFRAVYNFAVEHYLDDDENPILSSIAPTRTLTAKKSWNNIKR 218

Query: 171 IRPWTKEDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            + +  ED              R             L+ +G R ++        +     
Sbjct: 219 RKTYINEDKMPDWVRAVIEFDGRGQSRDTNKEFILTLILTGFRRAECESIAWSAVDLRYG 278

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--- 279
            I +          LP G +    M    ++       +   + +           K   
Sbjct: 279 FITSIDPKNGEVHSLPMGDVLWAIMKKRHRQRINDWVFESAKSKSGHIENISKVREKINA 338

Query: 280 -AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV---DQAETYTKGADRI-RLGIK 334
             G+  + H +R+   +I+ +     + +      K+    D    Y + +D+  R  + 
Sbjct: 339 QCGIQFTFHDLRRTFGSIAENLDYGQYTIKRLLNHKSAGNSDVTAGYVQVSDKKLRQAMN 398

Query: 335 NSR 337
           +  
Sbjct: 399 DIE 401


>gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   + I  +       +  ++     +  K     +GV K  S H +R   AT 
Sbjct: 74  WSWQFVFPSSRISMDPRTSTRRRHHVDENVLQVAVKRAVRASGVTKPASCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 394

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 91/320 (28%), Gaps = 33/320 (10%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
                + +A++                   + +++E            +    +     +
Sbjct: 77  QRERDFNAAMSEKAEAIRCRR--------FEAIVNERYDFFDKRKYKADFLEYYRKQLRK 128

Query: 102 IIRKSG------------DFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTS 139
             +K G               + +I         E            + + +SA  + ++
Sbjct: 129 HDQKWGFVYQHFYNFVHGKCTFEEIDVDLCNKFREYLLNAKQLRRDGQISRNSASGYWST 188

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            R   K   R   +  N    +E+ + +       + E++        +    + A  F 
Sbjct: 189 FRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEELYCLAETPCKIPVLKTASLFS 248

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
             + LR SD      + + +     K   T T  T       +   A+  IG        
Sbjct: 249 CLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEALELIGYSPEKKGL 308

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             + +  +      K     AG+ K  + H  R+  AT+ A AG     + +    K++ 
Sbjct: 309 VFKGLKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSIT 368

Query: 318 QAETYTKGAD-RIRLGIKNS 336
             + Y K  D   R      
Sbjct: 369 TTQRYMKVVDSNKREATTKI 388


>gi|307129021|ref|YP_003881037.1| Integrase [Dickeya dadantii 3937]
 gi|306526550|gb|ADM96480.1| Integrase [Dickeya dadantii 3937]
          Length = 406

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 92/331 (27%), Gaps = 28/331 (8%)

Query: 21  IIYYFRKGHG----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---------- 66
             + FR G      +RI+L    + +   A                +PR           
Sbjct: 45  WYFTFRVGGRSAAPQRIKLGNYPDLSLKAAREK-REQCRAWLAEGKNPRHQLSIATQESL 103

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           KP T+K  +  + +       A N     E     I    GD+      T+H        
Sbjct: 104 KPITVKEALEYWIREYATHKRA-NVNKHIEQLKKHIYPYIGDYPLSMCETRHWLECFSRV 162

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQ 181
           R   P +A   L   +   K+     Y   N    +        +         +E    
Sbjct: 163 RSEAPVAAGYLLQMCKQALKFCRVHRYADSNALSDLTIDDVGSKQNKRDRVHSRQELADI 222

Query: 182 FKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
           ++    +  +P  A    L    G R  +   + +     + +     +  +    ++  
Sbjct: 223 WRESTGQKFKPYYASLLHLLVVFGCRTQELRFSLISEWDLDDWVWTVPREHSKGGEKILR 282

Query: 240 GFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSA 294
              + +    +       ++     +  ++   S W +    + G     + H +R+  +
Sbjct: 283 PIPEAIRPFVVALCNQHKDSGLLLGEIKSSEAVSQWGRGIYKRLGHSEPWTLHDLRRTFS 342

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T   + G   H +    G         Y + 
Sbjct: 343 TTLNNMGIAPHVVEQLLGHTLGGVMAVYNRS 373


>gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361]
 gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361]
          Length = 131

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +  +   K     AG+  + + H  R   AT+    G   + +    G   V   + Y 
Sbjct: 50  PSWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYA 109

Query: 324 KGADRIR-LGIKNSR 337
           K  D  +    +  +
Sbjct: 110 KVVDEKKEKATETIK 124


>gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42]
          Length = 400

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 89/363 (24%), Gaps = 50/363 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           +S        ++ ++      
Sbjct: 29  RYAYKYIDALGKPKFVYAWR-----LVPTDKTPAGKRDDISLREKEKQIQKDLDDGIDTN 83

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++ + ++   +   + +     G      +     +      
Sbjct: 84  GGKMTVCQLYAKQIRQKGNVRLGTKKQRQYLMELLKNDPLGSRSIDSVKPSDAKDWAIRM 143

Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K      SS   +  S++  F  A+  +Y+             +  T+     T+E    
Sbjct: 144 KGNGVAYSSINNYKRSLKASFYMAIEDDYIRKNPFNFDLNTVIENDTKPKEALTEEQEAN 203

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             +F  E     Q       LL +GLR S+ C    +    N       +      +   
Sbjct: 204 LLAFVKEDKVYKQYYDEIVILLGTGLRISELCGLTTKLDMQNRIIDVDHQLLRDSEIGYY 263

Query: 239 DGFMKLLAMTPIGKETFFINNDKQK--------------------------------MNA 266
               K          +  +    Q+                                   
Sbjct: 264 IETPKTKNGVRQIPMSEEVYQAFQRVLKNRQKAEPIVIDGYRNFLFLKKDGFPKVACNYQ 323

Query: 267 TQFSIWFKAKAT---KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +  S   K       +A  + + H +R    T  A+AG     L    G   +     Y 
Sbjct: 324 SMLSSLVKKYNKTHKEALPHITPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNYY 383

Query: 324 KGA 326
             A
Sbjct: 384 AHA 386


>gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii
           DSM 18315]
          Length = 300

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 82/286 (28%), Gaps = 26/286 (9%)

Query: 67  KPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTK 117
           K  TL  L  ++          S A  +   +++  + I           D   +++   
Sbjct: 18  KQETLLKLFEQHNAEFAKKVGHSRAQGTFRRYQTVCNHIREFMPHTYKREDIPLKELNLT 77

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I          +K   ++   ++  ++ +   A     +  NP         ++     
Sbjct: 78  FINDFEYFLRTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYIN-SPESVDRGY 136

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T++++Q       + +     R  F F +++GL  SD        LQ          T 
Sbjct: 137 LTQKEIQTLMDAPMKNTYHELVRDLFVFSVFTGLAYSDVKNLTADRLQTFFDGNLWIIT- 195

Query: 231 TIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKAKATKAGVNKSA 286
                   +  ++LL +     E +       +     +    +   K    + G     
Sbjct: 196 -RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKEIGRQCGFKVRL 254

Query: 287 --HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 255 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 300


>gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus]
          Length = 361

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 76/318 (23%), Gaps = 64/318 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI------------T 115
           +  + K       A N+  ++  +               GD  +  +             
Sbjct: 29  VKRFIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQSRIELGDLQFEDLANFVGWLRNPAGH 88

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            K I    +  K   +S    L ++    ++  R E           R +     +   +
Sbjct: 89  LKVIDIQPKKAKREETSVNSILNAVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHIS 148

Query: 176 K----------------------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           K                          +         + +L    +   GLR  ++    
Sbjct: 149 KGRSYKKNILKLRVKKKLVQVLEHGQVKAIIEACHTKRDKLLIMLMYEGGLRIGEALSLR 208

Query: 214 VQHLQNNIFSIKTQKTGT---------------IITVELPDGFMKLLAM-------TPIG 251
           ++ +      I  +                    ++ EL   +   L             
Sbjct: 209 IEDISTWDNQINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYI 268

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311
                 +     +         +    + G+  +AH +R   AT    +G     +    
Sbjct: 269 FINLKDSYFGHPLKYQSVLDLIRRLGKRTGITFTAHILRHTHATELIRSGWDGAYVQKRL 328

Query: 312 GWKTVDQA-ETYTKGADR 328
           G   V    +TY   +D+
Sbjct: 329 GHAHVQTTLDTYVHLSDQ 346


>gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 417

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDY------RKITTKH 118
           LI  Y      ++     ++   +  +F       ++     G+ DY      + +   +
Sbjct: 109 LIELYQAVCESKEELQGKTIGKATVRAFRDSRKSFVQFLKTRGNEDYLPKEADKDLIESY 168

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
               +    +  S+    L  +  + + A ++ Y+  +P     +E P  +   +     
Sbjct: 169 RLFMLRDLGNKESTVSNRLRHLHQVIRKAQQERYIREDPFELIDIETPTYERNALTSDDL 228

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  ++   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 229 HKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRLDDVYTLDDGRRYISLCRTKTQN 288

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            ++       + +           +   +     + F+   +    KAG+      ++H 
Sbjct: 289 RSIVPLLPIAEEILTIVSDGRKEGLLFREFP-TNSHFNRKIRDIIIKAGLPPHTEATSHT 347

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 348 ARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIARE 393


>gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
 gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27]
          Length = 328

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 49/310 (15%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----G 107
                  +     R    T+      Y+        +  +   +  +    +        
Sbjct: 8   EKDLVINQRKKRNRDSKKTI---FEIYK--------SEKTVKDYMFHLKDFLHFVYDGEN 56

Query: 108 DFDYRKITT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
           DF   ++              +I    E RK   +S    L++++ L+K           
Sbjct: 57  DFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPV 116

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212
             + + +  R  E +   + +D+++    +   S    +       L Y+G+R  +    
Sbjct: 117 KYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTL 176

Query: 213 GVQH------------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKE 253
             +H            +Q        +     +  +L +    L++M             
Sbjct: 177 QFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYI 236

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                 D   ++    +   +      G + S H +R   AT  + +GA   E+    G 
Sbjct: 237 FSTSVLDNTPLSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGH 296

Query: 314 KTVDQAETYT 323
                 E Y 
Sbjct: 297 SDTKVTEVYI 306


>gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
 gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC
           51756]
          Length = 307

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 82/283 (28%), Gaps = 33/283 (11%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPSSA 133
               +   +   A N++  + +     +    +       +T  H++  ++ R  + SS 
Sbjct: 15  DAMLEFVEYPDHAENTQKQYITVARTFLHWCANRSLHPDHVTAAHLQRFLDDRGLSRSSQ 74

Query: 134 IQFLTSMRVLFKWAVRQ----------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + ++ ++  L+     +            V          P+           E+  +F 
Sbjct: 75  LAYMQALSALYGILQDRGLADDNPTSSWSVQYRKKKGKSGPRMAKRLPTVLDSEEETRFL 134

Query: 184 SFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTII 233
           +             + R+    LL++GLR S++    +  ++   +        K     
Sbjct: 135 ATIPLDDLLPFSVYRKRVFLHLLLFTGLRVSEALSLSLAQVRLEADPPVVRVIGKGNKER 194

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNK-- 284
            V +      +L      ++ F  N D             T            AG+ K  
Sbjct: 195 EVPISPTLQVVLEGYLERRQRFVRNGDWLFSTAVGAPFTRTWAYTTVSEVIRGAGIQKPA 254

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              H +R   AT    AG     + A  G + +      Y   
Sbjct: 255 YGPHVLRHTFATRQLRAGIAPAIVKAWLGHEDLAITFRVYEHV 297


>gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1]
 gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1]
 gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1]
          Length = 336

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHI----RSGVESRKHTPSS 132
             L+ ++ +S+   F  +++ + D             +T + +    R     R++   +
Sbjct: 22  RGLSGHTVLSYRDTFKLLLKFASDDSGKRVTELTLADLTAELVHGFLRHLEADRRNGIVT 81

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDMQQFKSF 185
               L ++   F++    +   +    ++     K    R           E  +Q  S 
Sbjct: 82  RNLRLAAIHSFFRYLAIVDPRHLTHAHTIIAVPFKRRPHRVAQFLEKDEVQEIFRQIDSR 141

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMK 243
              G +       L  +G+R  +     V+H++    S      K     T  L    + 
Sbjct: 142 TLFGQRDDALLRMLYNTGMRAQELVDLDVRHVRFTRPSNVLIFGKGRKERTCPLWPETVA 201

Query: 244 LLAMTPIGKETFFINNDKQKMNATQ-----------FSIWFKAKATKAG----VNKSAHG 288
            L      +   F +     +N               S      A +         + H 
Sbjct: 202 ALKSYLQPRSIKFTDAVPLFLNIDGNRLTRFGVRYIVSHRISEAAQRCPTLLARRITPHT 261

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRI 339
            R  +A     +      + +  G  +++   TY +   +  R  + ++ +I
Sbjct: 262 WRHTTAMHLLQSNVDLAMIRSWLGHASIETTNTYVEIDLEMKRKALASAEKI 313


>gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705]
 gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 309

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 90/288 (31%), Gaps = 23/288 (7%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           + +   +  +     S++      G++   +   ++     + +   D    +      +
Sbjct: 2   VINTINEEMSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQ 61

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTK 176
             +      H   + + F   ++     AV +  +  +P     ++  + + +  +   +
Sbjct: 62  KLINGYAEHHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQ 121

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232
            ++    +       P   +  LL   +GLR S++             ++   KT     
Sbjct: 122 FELHAVLADLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKN 181

Query: 233 -------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                          V+L    +  L++               K+  +  +        +
Sbjct: 182 GGGFVPTKNASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQ 241

Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           AGV   S HG+R   A++   AG +   +    G  +++  + TY   
Sbjct: 242 AGVPVISIHGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHV 289


>gi|317485773|ref|ZP_07944640.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316922974|gb|EFV44193.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 484

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 95/338 (28%), Gaps = 20/338 (5%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
              R +   + +  R               +F       ++    +R     P +K  T+
Sbjct: 6   YSMRQKKWIVTWKVRGATFHHECASEESALSFSE-IQRTISQKEKERFTQTKPIRKSITI 64

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130
           + L           S    +      +   +++  G      IT K I +  +S+K +  
Sbjct: 65  RELFDH---HFSLCSKRPITIKQDLYHARPLLQSLGTKQVASITQKEILAFCKSQKASGL 121

Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             S+  + ++ +R +  W  R+ Y++    +      +      P             + 
Sbjct: 122 AQSTIHRRISLLRSIASWGKREGYLSS--AIENCSVSKGKARRTPPPTVSELNALLRVAV 179

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------TIITVELPDGF 241
               R+     +Y+G R   S    ++    ++                    + +    
Sbjct: 180 PHVQRVILLG-IYTGARIGPSELFSLKWDDVDLTHGVISMPNANKGSKLKKRDIPIRKDL 238

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
           +  LA             +       + +  +K    K+G+     + +R   AT S  +
Sbjct: 239 IPTLARWQHQDADCPYVINWSGKPVRKIAAAWKTALQKSGIRAIRPYDLRHAYATYSIRS 298

Query: 301 GATAHELMATYGWKTVDQ-AETYTKGA-DRIRLGIKNS 336
           GA         G +      E Y      +    I+  
Sbjct: 299 GADIKTSTEIMGHENARMILEVYEHVDWAQKVRAIEGI 336


>gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7]
          Length = 310

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 89/283 (31%), Gaps = 27/283 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP-- 130
           +  Y           +S  S++   +  I+ SG  +  Y  I   ++             
Sbjct: 10  VRRYMSQLR-EEKRYSSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLEKGCM 68

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE 188
            ++   ++  +R ++  A+        P L            +   + E+  +  +   E
Sbjct: 69  CNTVSTYMRRIRCVYNKAIEDGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMTVKVE 128

Query: 189 GSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
               R    +      Y+G+   D      ++++N I     QKTGT +           
Sbjct: 129 SEVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLEILDTAELM 188

Query: 235 ----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               +         L     G +T +    +     ++F+   KA    AG+  + +++ 
Sbjct: 189 RKELMGDKRPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGIASDVTSYT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A    +       +    G K++   + Y +     ++
Sbjct: 249 IRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKM 291


>gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1]
 gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 379

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 84/326 (25%), Gaps = 73/326 (22%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKIT-------TKHIRSGVESRK 127
           +Y K       + N+  ++     Q          DYR++           +R+  ES K
Sbjct: 30  KYLKYLDTTGKSRNTLKTYCYALKQYFVFLQEKKKDYREVRLEDLVEFVAWLRNPYESAK 89

Query: 128 HTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLS----------------- 160
            TP           +    +T++   + +  R E +  +                     
Sbjct: 90  VTPLQPVKAKKTEKTINLTITAVTNFYDYLYRNEEIQNDMVDKLLKQVFTGGRTRYKDFL 149

Query: 161 ---------VERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                         +  E  +      ++  Q     +   + RL  + L  +GLR  ++
Sbjct: 150 YHVNKNKPSNRHILKVKEPRKKLKVLTKEEVQQLIEATTNIRDRLLIQLLFETGLRIGEA 209

Query: 210 CRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMT-------- 248
               ++    +  +    +                   + +    M LL           
Sbjct: 210 LSLFIEDFIFDHKNGHRIRLVNRGELENGAKLKTGEREIYVSQALMNLLDDYLYEVVDEL 269

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                         N  Q M  +     FK    K G++   H +R   AT+        
Sbjct: 270 DLDTNFVFVKLRGKNIGQPMTYSDVEALFKRLRKKTGIHVHPHLLRHTHATMYYQQTKDI 329

Query: 305 HELMATYGWKTVDQAE-TYTKGADRI 329
            ++    G   +      Y   +D  
Sbjct: 330 KQVQERLGHSQIQTTMNLYLHPSDEE 355


>gi|54293028|ref|YP_125443.1| hypothetical protein lpl0065 [Legionella pneumophila str. Lens]
 gi|53752860|emb|CAH14295.1| hypothetical protein lpl0065 [Legionella pneumophila str. Lens]
          Length = 417

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 99/324 (30%), Gaps = 21/324 (6%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R   GR   L            +  +           + + +  TL  + ++Y +     
Sbjct: 59  RITLGRYPELTVEMARKEAQKLLGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVR--K 116

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVL 143
           SL  N+  +++           D  +  IT   +    +   +    + A   +  +R L
Sbjct: 117 SLKHNTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNERGEAYANLAMRLLRAL 176

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------EDMQQFKSFWSEGSQP----- 192
           F +A  Q   +    L  E P ++    R W +             + W  G Q      
Sbjct: 177 FNFAAGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEI 236

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLAMT 248
            R     ++ +GLR  ++       +  N  ++    T+   +         +  LL+ +
Sbjct: 237 LRDYLLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRS 296

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                 +         +  +           +G++ + H +R+   TI+     +A+ L 
Sbjct: 297 QNRINEYVFPGKGAAGHIIEPRKQMANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALK 356

Query: 309 ATYGWK-TVDQAETYTKGADRIRL 331
                K   D    Y    D  RL
Sbjct: 357 RLMNHKMNGDITAGYI-VTDVERL 379


>gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 275

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 10/223 (4%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164
              +  +++T +   S    +  +P +     + +  +F    R  E+   NP  ++ + 
Sbjct: 31  FAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKF 90

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               + +   T E + +  +          L  +  L +G R  ++       +     +
Sbjct: 91  TIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRIT 150

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K     ++ +     + +                       F    +  +      
Sbjct: 151 FVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRG 202

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  H +R   A     +G     L    G   +     Y   A
Sbjct: 203 QLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLA 245


>gi|126666155|ref|ZP_01737135.1| Phage integrase [Marinobacter sp. ELB17]
 gi|126629477|gb|EBA00095.1| Phage integrase [Marinobacter sp. ELB17]
          Length = 408

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/318 (10%), Positives = 99/318 (31%), Gaps = 33/318 (10%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
            G   +         +   +     ++ + +     + ++R         +     +   
Sbjct: 78  AGINDEGADPEVNAAQTPYVADFADQWFQESKIQWRSSHTRNVVSILDSSLKPAFKNTRM 137

Query: 112 RKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
            +IT   I +                  P +    LT +R++   A  +     NP  ++
Sbjct: 138 AEITKADILAARTKMAKRRGRGASGLMAPKTINSHLTILRMIMTEASERFE-FDNPYRNI 196

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-- 219
           +  K +   I P++  ++++   +  E  +    ++   Y+G+R  +       ++    
Sbjct: 197 KPLKLQRVHIEPFSLAEVERICKYVREDYRNY--YQLRFYTGMRTGEIDGLKWANVDFEK 254

Query: 220 ----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMN 265
                     +  +  T+  G+   + +     + L           +  F N + Q ++
Sbjct: 255 QEILVRETLIHGKTEYTKTDGSQREIPMFGPVYEALKAQHAAIGKLSKFVFCNREGQPLD 314

Query: 266 ATQFSIW-FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
               +   +        +  +  +  R  +AT+   +G     +    G  + +   + Y
Sbjct: 315 HNNVTKRVWYPLLEALKLTKRRPYQTRHTAATLLLASGENPEWVARVLGHSSTEMLFKVY 374

Query: 323 TK-GADRIRLGIKNSRRI 339
           ++   +  R+      R+
Sbjct: 375 SRFIPNLTRMDGSAFERL 392


>gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 84-1]
 gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 124-1]
 gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 85-1]
          Length = 288

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 10/223 (4%)

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164
              +  +++T +   S    +  +P +     + +  +F    R  E+   NP  ++ + 
Sbjct: 43  FAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLENMRKF 102

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
               + +   T E + +  +          L  +  L +G R  ++       +     +
Sbjct: 103 TIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQVTKYRIT 162

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K     ++ +     + +                       F    +  +      
Sbjct: 163 FVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQ--------FLSVMEKTSIVLPRG 214

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +  H +R   A     +G     L    G   +     Y   A
Sbjct: 215 QLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLA 257


>gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
 gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697]
          Length = 350

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 87/305 (28%), Gaps = 48/305 (15%)

Query: 65  RKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------ 116
           + +   +   ++E+  S        + +++ S+ +   Q ++   +   +K+T       
Sbjct: 5   KSESIVISQAVNEWFTSYLPIARGCSSHTQRSYFTALSQYMQFLQEE--KKVTPNTLSAE 62

Query: 117 --------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
                     +    ++RK + S+    L+ ++   K+   ++       +S +  K   
Sbjct: 63  SYSKSNLNDWLLWLKKTRKCSNSTCNDRLSGVKSFIKFLSIKDIRFNAVYISSKEIKPMR 122

Query: 169 EGIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                  +   +         ++    G +    F  +   G R  +     +  L  + 
Sbjct: 123 TVKVIHEEITQKAIKSLFSTIRTDTRTGKRDLAIFYLIYSIGARIDEILSVKICDLHLHE 182

Query: 222 FSIKTQ-----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----------KMN 265
           +          K     T  +     K+L             +              K++
Sbjct: 183 YPNPNYLTIIGKGYKCRTPPILKDVTKILLRYIEVFHNNDFASHSYLFYSFYNGEKKKIS 242

Query: 266 ATQFSIWFKAKATKAG-VNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +   K  A KA  ++K        H +R   A+   + G     +    G   +  
Sbjct: 243 QEAINKRLKMYAAKANEIDKCVPRNLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRT 302

Query: 319 AETYT 323
              Y 
Sbjct: 303 TMRYI 307


>gi|228941041|ref|ZP_04103598.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228973972|ref|ZP_04134546.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980561|ref|ZP_04140870.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis Bt407]
 gi|228779122|gb|EEM27380.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis Bt407]
 gi|228785698|gb|EEM33703.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228818584|gb|EEM64652.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 322

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 76/290 (26%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        +     +T K IR+     +  
Sbjct: 24  LVKDFLIEKKSQGKAASTLQQYSWDLRIILFLIHEHFENKKLIDLTRKDIRNLSIIFQEM 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 84  GMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIRDITFITEDQINWLI 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T +         +L  
Sbjct: 144 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 200

Query: 247 MTPIGKETFFINNDKQKMN------------------ATQFSIWFKAKATKA------GV 282
              + +      N + K                     + F+ W +  A         G 
Sbjct: 201 NHRVQQCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYWCEIFAKMLNEKEGKGF 260

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + H  R          G    +L +      +   E+Y K      + 
Sbjct: 261 KINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 310


>gi|188492966|ref|ZP_03000236.1| integrase [Escherichia coli 53638]
 gi|188488165|gb|EDU63268.1| integrase [Escherichia coli 53638]
          Length = 358

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 104/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPRNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVTQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+       ++ N+     +  + I  K G+ 
Sbjct: 55  IYKNYSPAALIEKLKGFDSFTMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEI 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   ++  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHVRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKFTGIQFSENPPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
 gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185]
          Length = 410

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 81/286 (28%), Gaps = 26/286 (9%)

Query: 67  KPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTK 117
           K  TL  L   +          S A  +   + +    +           D   +++   
Sbjct: 105 KQETLLKLFDRHNAKFAKKVGHSRAKGTFQRYITVCKHLHEFIPYTYKREDIPLKELNLT 164

Query: 118 HIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I          ++   ++   ++  ++ +   A     +  NP         ++     
Sbjct: 165 FINDFEYFLRTEKRCRTNTVWGYMIVLKHIVAIARNDGRLPFNPFAGYIN-SPESVDRGY 223

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            TK ++Q       + +     R  F F +++GL  SD       +LQ          T 
Sbjct: 224 LTKSEIQTLMDAPMKNAYHELVRDMFVFSVFTGLAYSDVKNLTTDNLQTFFDGNLWIIT- 282

Query: 231 TIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVN--K 284
                   +  ++LL +     E +      N      + T  +   K    + G     
Sbjct: 283 -RRKKTNTESNIRLLDVPRKIIEKYRGLARDNKVFPMPSNTTCNKILKEIGRQCGFKTRL 341

Query: 285 SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           S H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 342 STHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQK 387


>gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 335

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 80/304 (26%), Gaps = 37/304 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFE---SYFDQIIRKS-----GDFDYRKITTKHIR 120
              L+ ++         +++  +  S+            +                  I 
Sbjct: 10  FSVLLQQFFMDYLIGQRNVSPRTVASYRDTFRLLFHFAEQHVGRPPHKLRLTDFNAGLIL 69

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--- 173
             +      R +T  S    L ++R    +A  QE  A+     V     K         
Sbjct: 70  DFLNHLEVGRHNTIRSRNARLAAVRSFAHYAALQEPSALPVLQGVLAIPMKRFDRPMVGF 129

Query: 174 WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQ 227
            ++E+MQ   +        G + +     L  +G R S+     V+ +     S      
Sbjct: 130 LSREEMQCILAAPNADTWCGKRDQAMLATLYNTGARVSELTSMRVKDVTLGRGSCVLLHG 189

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAG- 281
           K     T+ L +   KLL                      +M     +   K  A  A  
Sbjct: 190 KGRKERTLPLWNDTAKLLRRWLRQINPDPQQWLFPNRSGGQMTRAGVTDRLKLAAATASE 249

Query: 282 -------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
                   + S H VR  +A      G     +    G ++      Y +      +  +
Sbjct: 250 GYPPLKARHVSPHVVRHATAMHMLQGGVDLSLIALWLGHESPATTHMYIEADLAMKQRAL 309

Query: 334 KNSR 337
              +
Sbjct: 310 SAIQ 313


>gi|256022297|ref|ZP_05436162.1| integrase [Escherichia sp. 4_1_40B]
 gi|301329561|ref|ZP_07222342.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
 gi|300844318|gb|EFK72078.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 78-1]
          Length = 392

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 89/326 (27%), Gaps = 22/326 (6%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
            Y +R          GR   L                   T  R Y     +   T+   
Sbjct: 41  QYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQC 100

Query: 75  ISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSS 132
           +  +  +    +L   ++  + S    ++     +     IT  + +    E  +  P  
Sbjct: 101 LDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEERDNPRR 160

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKE---DMQQFKSFW 186
           A Q L+ +R    W +R++ +     +S++     +    G R  +      +       
Sbjct: 161 ARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERS 220

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIKTQKTGTIITVELPDG 240
              +  +L  + L+  G R S+   A        +++                 +     
Sbjct: 221 RASTSNKLLHQMLMLWGARLSELRLAKKTEFDLLENVWTVPKEHSKMGNVIRRPIFEQIK 280

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                AMT      F   +  + ++    + +         +     H  R+   T  ++
Sbjct: 281 PFLEKAMTTYNDVLFPGEDISKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSE 340

Query: 300 AGATAHELMATYGWKTVDQAETYTKG 325
                H      G +       Y K 
Sbjct: 341 MNVEPHVTERMLGHELGGIMSVYNKH 366


>gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
 gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725]
          Length = 333

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 41/301 (13%)

Query: 87  LAVNSRISFESYFDQIIRKS--GDFDYR---------KITTKHIRSGV----ESRKHTPS 131
            +  +   +  Y    +     G+   R          I  + +   +    E RK   +
Sbjct: 32  RSQKTLKDYMFYLKDFLNFVYEGEEGIRADELIELMKDIEKQDVEDYIGYLVEERKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + ++S++ L+K   +  Y      + + +  R  + +   + ED+++    +     
Sbjct: 92  SINKIISSLKSLYKEMEKNGYENPFKYVELFKVSRNIDNVLKLSFEDIKKIIGQYKINGE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----------TQKTGTIITVE 236
              +       L Y+G+R  +      +H+     S               K+   I V+
Sbjct: 152 KDYRNVNILYTLFYTGMRSQELINLKFKHILEREGSYYIKLEETKSGREQYKSVHNILVQ 211

Query: 237 LPDGFMKLLAMTPIGKETFFINND--------KQKMNATQFSIWFKAKATKAGVNKSAHG 288
               + + L       +                 +++        +      G + S H 
Sbjct: 212 RLKEYKEYLQALYNIDDVMIEEQYVFSSSVEKNTQLSYRALYDLVQNMGKLIGKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSRRISSVVDSD 346
           VR   AT  +  GA   E+    G       E Y   K     R+ ++     SS+ D +
Sbjct: 272 VRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRV-LEKLPAFSSLEDIE 330

Query: 347 D 347
           +
Sbjct: 331 E 331


>gi|160884941|ref|ZP_02065944.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
 gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483]
          Length = 411

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 79/269 (29%), Gaps = 28/269 (10%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKHT----PSSAIQ 135
             A  +   +++   ++           D  + ++T + I++     K       ++ ++
Sbjct: 128 DYAPVTINRYKNVLKKLENSIPTFYDKEDITFHELTPEFIKAFDLHLKTEVGLCRNTIVR 187

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--- 192
           ++   + +   A+ + ++  +     +  ++        T +++Q   +      +    
Sbjct: 188 YMKCFKKITNMALAKGWMKKDAFYGYKM-EQDETAPVFLTYDELQTVMNKEFTIPRLALV 246

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----------F 241
           R  F F  ++GL   D      + +  +       + G I  +                 
Sbjct: 247 RDIFIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLPVP 306

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
           + +L                      + + + K  A   G+ K  + H  R    T    
Sbjct: 307 LAILKKYENNPVCIKKGYCLPVPCNQKMNSYLKEIADFCGIKKNITTHVARHTFGTTITL 366

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327
                  ++    G  +    + Y +  +
Sbjct: 367 ANNVPLQDVSVMLGHASTRMTQHYARVMN 395


>gi|153812120|ref|ZP_01964788.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
 gi|149831775|gb|EDM86861.1| hypothetical protein RUMOBE_02516 [Ruminococcus obeum ATCC 29174]
          Length = 408

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/388 (10%), Positives = 100/388 (25%), Gaps = 68/388 (17%)

Query: 17  RHGKIIYYF-RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           + G+  Y +     G+R+ +               +           + +    TL  L 
Sbjct: 24  KDGRYSYRYTDIRSGKRLTVYAKDLPELREKEKQIVKDLEDNILTDGAIK--KLTLNKLF 81

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132
             Y  +     L  ++R ++   + +++  + G+    +I   HI+S          +  
Sbjct: 82  ERYMST---RELKESTRANYLKTWENRVKDEIGNIKVIQILPSHIKSFYSKLSKAGYAYS 138

Query: 133 ----AIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
                   +  ++ +     + ++  A        R   +   +    +E M +F     
Sbjct: 139 TIKFINNMIYPALEMAVDDDIIRKNPAKFSISDYGRQAEERIALTVLQQEKMLEFVKNNQ 198

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNIFSIKTQ 227
             +        +L +G+RC +      + +                             +
Sbjct: 199 VYNTYYPMLRIMLGTGVRCGELIGLTWEDVDVRTKAVSIDHQLIYKDLGDGYKFHISTPK 258

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSIW 272
               I T+ +     +                           F+    + +  +  +  
Sbjct: 259 TDSGIRTIPMTSDVQRAFEEQKKLNFMLQKGKDVEIDGYKGFIFMAKSGRPLMPSAINNI 318

Query: 273 FKAKATKAGVN-----------------KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                                        SAH +R  + T  A+       L    G   
Sbjct: 319 LYNIVDAYNKKEVQIAKTEHRNAELLPTVSAHIMRHTACTRMAEKRMDVKVLQYIMGHAH 378

Query: 316 VDQAE-TYTKGADRIRLGIKNSRRISSV 342
           +D     Y   ++  R+  +   R+ SV
Sbjct: 379 IDVTMDVYNHVSEMSRIESE-ITRLESV 405


>gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis
           MIT 98-5491]
 gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491]
 gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 353

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 38/274 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++ E+  + +  SL+  ++ ++       I   G           I    E    T  
Sbjct: 100 EEMLKEFL-TINTSSLSDATKKNYRVAL---INFFG----------FIDKQNEDDDGT-- 143

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                      +F+  ++                   E ++ + K            G++
Sbjct: 144 ---------SYIFRIELKNWGGLRGKSGQKLPSYMIEEEVQRFLKGIDTYPFKHQDLGAR 194

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            RL  + ++Y+G+R  +S    ++ +  +      Q  G      +     K ++     
Sbjct: 195 NRLLLKVIIYTGIRVGESLNLKIKDITLDGDFYVIQVRGKGNKPRVVMIKAKNISNDFSL 254

Query: 252 KETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
                         F N+  +K+     S   +      G+ K    AH +R   AT+  
Sbjct: 255 WINSRPNEVENDLLFCNHKGKKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLY 314

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
                   +    G  +V+ +  YT    +    
Sbjct: 315 QKSQDLVLVQEALGHASVETSRIYTHFDKQKLKA 348


>gi|42528242|ref|NP_973340.1| phage integrase family site specific recombinase [Treponema
           denticola ATCC 35405]
 gi|41819512|gb|AAS13259.1| site-specific recombinase, phage integrase family [Treponema
           denticola ATCC 35405]
          Length = 269

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 79/271 (29%), Gaps = 20/271 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
             EY K     +L+ N+  S+                  ++ +++ +          P +
Sbjct: 7   FEEYLK---KSNLSQNTLTSYLWTVKYYTEHY-----DSVSKENLLAYKGYLIEFFKPKT 58

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  +    ++  + +       +  +           +        +    E  + 
Sbjct: 59  VNLRIQGINKYLQFIHKDQLQLKFVKVQQKNFLENVISNADYQFLKSSLKRD---ENREW 115

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TP 249
                FL  +G R S+  +  V+H++   F + ++               + L       
Sbjct: 116 YFVVWFLAATGARVSELIQIKVEHVKLGYFDLYSKGGKLRRLYIPKILKEEALQWLESIG 175

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                 F+N  ++ +     +   K  A K G+N+     H  R   A    +       
Sbjct: 176 RDSGYLFLNRFEKHITTRGIAQQLKNYARKYGINEKVVYPHSFRHRYAKNFLEKFNDISL 235

Query: 307 LMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           L    G ++++    Y +  A   R  + + 
Sbjct: 236 LADLMGHESIETTRIYLRRTASEQRELVDSI 266


>gi|193071451|ref|ZP_03052364.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192955220|gb|EDV85710.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 409

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 105/360 (29%), Gaps = 39/360 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRS 121
            KP T+   ++ + +S    +     R+ +    +   + +I+  G     K   +H  +
Sbjct: 104 LKPVTVGDALTYWLESYAKEN-----RVDYDPLKKRLNNHVIQHIGPMPLDKCELRHWLA 158

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPW 174
             +   K  P SA   L + +   K+  ++ Y   N    +      ++P      +   
Sbjct: 159 CFDRVAKQAPVSAGFLLQTCKQALKFCRKRRYAISNVLDDMSVADVGKKPDISERVLSNK 218

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 219 ELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEIGEWDFTEMLWTVPKEHSKTK 278

Query: 235 VELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVR 290
           V +     + +            +      +    T  S + +    +    + S H +R
Sbjct: 279 VAIFRPIPEAILPFVTQLVEQNKHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIR 338

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           +   T+  D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 339 RTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWMERLGILAGTHE 398


>gi|189402613|ref|ZP_03006783.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403473|ref|ZP_02795670.2| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189354639|gb|EDU73058.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360455|gb|EDU78874.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4486]
          Length = 396

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 15  SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 71

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 72  YRDVRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 131

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 132 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 191

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 192 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 248

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 249 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 285


>gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13]
 gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM
           18228]
 gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13]
          Length = 406

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 74/302 (24%), Gaps = 18/302 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
             AY++A       +   +             + + K       ++ +        + + 
Sbjct: 86  REAYVTAEMVRNAYQGVGSEYETLIKAFDKDCANFLKRVG-KDRSIGTYKVMVRARNYVA 144

Query: 104 RKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153
                     D    ++T   I+                +      ++ +   A     +
Sbjct: 145 AFIKSFYKRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLI 204

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSC 210
             NP           +     T++++++  +   +       R  F F  ++ L   D  
Sbjct: 205 PRNPFAQF-HISPNVKEREYLTEDEIKRIMAHEFDNPTLALVRDLFIFACFTALSFVDMK 263

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF 269
                 +                 V      + + L +    K          K+N    
Sbjct: 264 ELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVFGKINYWTM 323

Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K    + G+ K    H  R    T++   G     +    G   +   + Y K   
Sbjct: 324 CKQLKKVMAECGIEKHISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITT 383

Query: 328 RI 329
           + 
Sbjct: 384 QK 385


>gi|150403424|ref|YP_001330718.1| phage integrase family protein [Methanococcus maripaludis C7]
 gi|150034454|gb|ABR66567.1| phage integrase family protein [Methanococcus maripaludis C7]
          Length = 322

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 90/298 (30%), Gaps = 30/298 (10%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE---- 124
           K  + ++     +  +   +     +     +       + +  ++T             
Sbjct: 24  KKWVDKFIAEREFDGIKKTTIQGDVNRLKVFLNFIFNRLEKNPEEMTNAEFIKFFNYLEK 83

Query: 125 SRKHTPSSAIQFLTSMRVLFKWA-------VRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            RK + ++  ++  +++V +K          + E        S E     +         
Sbjct: 84  ERKLSRNTQNKYYNNLKVFYKLMRLENFKDFKDESEERKRFTSFEIKHYDSLSTEILNMI 143

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR--AGVQHLQNNIFSIKTQKTGTIITV 235
             +  ++  +   +  +   FL  +G R S++ +   G   L+   F ++  K      V
Sbjct: 144 LTEILETRSTTKIRDAMIIRFLWDTGARISEALKLEYGDSDLEKGEFRLRNTKGKEERIV 203

Query: 236 ELPDGFMKLLAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
              +  + L+            K+  F     + +   + S  F+    +          
Sbjct: 204 TCSNDTLTLVNYCLKANLRKEPKDKIFQTYKGEPLQRNRVSDVFRNAVKELKSQGRIPEN 263

Query: 287 -----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
                H +R   A    D G     +    G K+++    Y+   +R    +K  ++I
Sbjct: 264 KRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSLETTLYYSHSKERQENMLKQIKKI 321


>gi|170731520|ref|YP_001763467.1| integrase family protein [Burkholderia cenocepacia MC0-3]
 gi|169814762|gb|ACA89345.1| integrase family protein [Burkholderia cenocepacia MC0-3]
          Length = 369

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 85/334 (25%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R R     Y      G +        +    A            +          T   
Sbjct: 5   KRERSSNWYYKLYPPGGGKPLQGSTGTNDKARAQEFHDRLKASLWDQAKLGHTPQYTWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
            +  Y +     +    ++I    +   +           I    I +   +++  P   
Sbjct: 65  AVVAYLEDREGIASIETTKI----HLRWLDTHLDGELLVNIDRDRIDAIERAKRAEPVIV 120

Query: 131 ---------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                          ++  +    +  +   A  + ++A  P    ++   K        
Sbjct: 121 RTRSGPKPTGKTVSAATVRRVGGVIIAVLNHAAERGWIARAPVRKRKKSTAKRIRWLSQA 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +      +      +  + + E  L     +GL+ S           +   +   +    
Sbjct: 181 EAGRLLAQLPEHLAAMAQFSLETGLRRANVTGLQWSQVDLVRRVAWIHPDQAKARKAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++        + LA     +    +   K        +  ++    +A + +   H +R
Sbjct: 241 PLSETAVAVLRQQLAKKRRAEHVESVFVYKGSPVYQTTTEAWRKALKRAHIKDFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|71907955|ref|YP_285542.1| Phage integrase [Dechloromonas aromatica RCB]
 gi|71847576|gb|AAZ47072.1| Phage integrase [Dechloromonas aromatica RCB]
          Length = 426

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 102/322 (31%), Gaps = 30/322 (9%)

Query: 43  FIPAYMSALTGSTPKREYI--NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              A+ S   G +P R  +   +      T      +Y   A    LA +++   +S +D
Sbjct: 85  LTRAHRSVEQGESPSRSKVEKRTEAADALTFGSWAEKYFAEA---DLAESTKAMRKSVYD 141

Query: 101 Q-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINP 157
           + +  + G     +IT   + +  E  K   ++A  +     +  +F++   +     NP
Sbjct: 142 RNLADEFGRLKLEEITPVRLMARCEKIKERGAAAPAVHAREIVLQVFRFIQARGLKIDNP 201

Query: 158 CLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
             S+      T   R             +     +  +  RLA +F+L + +R ++   A
Sbjct: 202 AESIRPSAIATFKARDRALMPAEIHTFFKALEQTATAATLRLAVKFMLLTMVRKTEFIEA 261

Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
               +              K G    V L    + +L             +  +   A  
Sbjct: 262 KWDEVNFETAIWTIPKERMKAGRPHNVYLSQQALDILVAFKTCFSASSYLHPGRYETALP 321

Query: 269 FSIWFKAKATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            S     +   A V             + H +R+ ++T+  +AG     +      +   
Sbjct: 322 ISSATLNRVIDATVKVIHDRGEEFAPFTVHDLRRTASTLLHEAGFNTDWIEKCLAHEQRG 381

Query: 318 QAETYTKG--ADRIRLGIKNSR 337
               Y K   A++ R  ++   
Sbjct: 382 VRAIYNKAEYAEQRRTMLQAWA 403


>gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 329

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 79/292 (27%), Gaps = 36/292 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHI 119
             TL+   ++  +       +  +  ++   +  ++              D+       +
Sbjct: 5   AITLQAFFTD--RLIRERHASPCTVAAYRDTWRLLLGFCAKRTGKSPSALDFTDFDISLV 62

Query: 120 RSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            + ++     RK++  +    L ++  LF++A  +          V     K       T
Sbjct: 63  CAFLDHLERDRKNSVRTRNARLAAIHSLFRYAALRHPEHAATIARVLAILPKRFERAIVT 122

Query: 176 KEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                +              G +        + +GLR S+        +     +    +
Sbjct: 123 FLTEVEVQALLAAPDRTLWSGRRDYAMLLVAVQTGLRISEVIGLLWTDVHLGAGAHVACQ 182

Query: 229 T--GTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWF-------- 273
                     L    +K+L +     E       F       ++                
Sbjct: 183 GKGRKDRITPLTVPVVKVLRVWLAECEANPAARLFPTRTGTPLSRDAIERRITLHAAKAS 242

Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A AT A  N + H +R  +A    +AG     +    G + VD    Y   
Sbjct: 243 AACATLANKNVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLHA 294


>gi|257891586|ref|ZP_05671239.1| integrase [Enterococcus faecium 1,231,410]
 gi|261206697|ref|ZP_05921392.1| predicted protein [Enterococcus faecium TC 6]
 gi|289567110|ref|ZP_06447504.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615943|ref|ZP_06695773.1| integrase [Enterococcus faecium E1636]
 gi|314940596|ref|ZP_07847729.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|314943369|ref|ZP_07850141.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|314949883|ref|ZP_07853186.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
 gi|314953769|ref|ZP_07856636.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|314993029|ref|ZP_07858422.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|314998266|ref|ZP_07863135.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|257827946|gb|EEV54572.1| integrase [Enterococcus faecium 1,231,410]
 gi|260079055|gb|EEW66751.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161094|gb|EFD09000.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591192|gb|EFF22871.1| integrase [Enterococcus faecium E1636]
 gi|313587746|gb|EFR66591.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a01]
 gi|313592459|gb|EFR71304.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133B]
 gi|313594245|gb|EFR73090.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133A]
 gi|313597927|gb|EFR76772.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133C]
 gi|313640228|gb|EFS04809.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0133a04]
 gi|313643767|gb|EFS08347.1| site-specific recombinase, phage integrase family [Enterococcus
           faecium TX0082]
          Length = 373

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 124/373 (33%), Gaps = 44/373 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKK 67
           ++ K   +  K    +      ++ ++     S    A+  A L  +    E I    + 
Sbjct: 2   WLEKINDKKFKYTERYTDPLTEKKRKVSVTLSSNSRQAWNQANLLLNEKIAEKIKRNEEL 61

Query: 68  PTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           P T   L +++ +         +  +   + S   + I+   D   + + +  I+  ++ 
Sbjct: 62  PLTFGELKTKWDEKYKPTVKESSYRTTQVYLSLISKYIKD--DVLVKNVNSNLIQDMLDY 119

Query: 126 RKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINP------CLSVERPKRKTEGIRPW- 174
                + +  ++  ++      FK+A R+  +  NP          +  +   +    + 
Sbjct: 120 YYFEKNLSYNYVIHLKTFTGMIFKFANRRYGLKYNPVNGVSLARKPKTNEEIKKEKDGYL 179

Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------QN 219
                + +   +    + S+  L  +FL  +GLR  +                       
Sbjct: 180 SKEEVQMIASKQKSSHQQSRYSLITKFLFLTGLRYGELISLTESDYDGNKITVSGTYDYE 239

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSI 271
                 T+ TG+  T+EL     +++               +  FI+ +   ++   ++ 
Sbjct: 240 LKIKTTTKNTGSYRTIELSSNAKEIIDQLIEENKLIKNNKDKYIFISKNGNPISIQAYNQ 299

Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-D 327
             +A + +  ++K  S+H +R    ++  + G     +M   G +      + YT    +
Sbjct: 300 SLRAVSKELNIDKKVSSHMLRHSHISLLTELGIPLKAIMDRVGHEDSKTTLKIYTHTTKN 359

Query: 328 RIRLGIKNSRRIS 340
                ++   +I 
Sbjct: 360 MQNQLVEKLGKIE 372


>gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396]
 gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396]
          Length = 337

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 89/320 (27%), Gaps = 38/320 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R  +P           A   S        +P K    L  L+        W  L
Sbjct: 19  RGGKRVRKTFPKLQQAKQ--WEAEQKSKAYSGEWKAPTKDKRRLSDLV------KTWHDL 70

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAI 134
             ++             +  K  +   ++ T +        R            + ++  
Sbjct: 71  HGHTLKDADNRLHALKVLCEKLNNPIAKEFTAEDFLEYRRWRLTQKVKNSNRLVSANTVN 130

Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQ 191
                +  +F   ++   +   NP   V + +     +    K+ ++        S    
Sbjct: 131 HDHMYLSAVFNKLIKFGNWKLENPLKGVSKLRIDERDLTYLEKDQIRALLEALKKSRNPN 190

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
                +  L +G R  ++ +   + +++N       K      V + +     +      
Sbjct: 191 VLAMSKICLATGARWGEAEKLNAEQIRHNKVHFVGTKNSKSRAVPISEELAVEILSGRAE 250

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-----VRKFSATISADAGATAHE 306
           +   F     +          F+    +AG+    HG     +R   A+          +
Sbjct: 251 RGRLFRGAGSE--------EAFERAVKRAGLTL-PHGQLTHILRHTFASHYMINDGNILK 301

Query: 307 LMATYGWKTVDQAETYTKGA 326
           L    G  ++D    Y K A
Sbjct: 302 LKYILGHASLDMTIRYAKLA 321


>gi|73745528|emb|CAD10261.2| PSA integrase [Shuttle integration vector pPL2]
 gi|166997968|emb|CAP74562.1| PSA integrase [Cloning vector pIMK]
 gi|166997971|emb|CAP74564.1| PSA integrase [Cloning vector pIMC]
          Length = 384

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 94/347 (27%), Gaps = 38/347 (10%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +  ++  +GK     R    G          S     Y +       K+   +S   K  
Sbjct: 1   MKIKKLANGKYCVRLRIKVDGEWKEKRLTDTSETNLMYKA---SKLLKQVQHDSSSLKEW 57

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRK- 127
             K   + + K+   G  + ++   ++  ++Q +    +   +  I     +  +     
Sbjct: 58  NFKEFYTLFMKTFKDGKSSQSTINLYDLAYNQFVDYFDEKIKFNSIDAVQYQQFINHLSV 117

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183
            +  S+       +R +F  AV   Y+  NP +      +     +     T +     +
Sbjct: 118 DYAISTVDTRHRKIRAIFNKAVHLGYMKKNPTIGAHISGQDVAKNKAQFMETDKVHLLLE 177

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230
                 S  R      + +G+R  +      + +     SI   K               
Sbjct: 178 ELAKFHSISRAVIFLAVQTGMRFEEIIALTKKDINFTKRSITVNKAWDYKYTNTFIDTKT 237

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINN-------------DKQKMNATQFSIWFKAK 276
                + + +   + L         +   +               + ++    +   K  
Sbjct: 238 KKSRVIYIDNSTAQYLHSYLNWHTEYMKEHAIKNPLMLLFITYHNKPVDNASCNKALKKI 297

Query: 277 ATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +       + H +R     +  +AG     +    G   ++    Y
Sbjct: 298 CSTINSEPVTLHKLRHTHTGLCVEAGMDIIYVADRLGHDDINTTLKY 344


>gi|115534317|ref|YP_783846.1| putative integrase [Streptomyces laurentii]
 gi|23978909|dbj|BAC21272.1| putative integrase [Streptomyces laurentii]
          Length = 458

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 89/383 (23%), Gaps = 63/383 (16%)

Query: 14  ERTRHGK-IIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +  R G    Y  R     G      +P     +       T +   R +   PR    T
Sbjct: 64  KTDRFGTGTRYRARYVGPDGTEKSKSFPDRQKRLAEQWLNETAADMARGHYIDPRAARIT 123

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
            +    ++  +       VNS+ + E      +    G          HIR+ +   +  
Sbjct: 124 FRQFAEKWVATHTTE---VNSKEAAERRLRLHVYPYIGTRPLASFQPGHIRTWLGELESK 180

Query: 130 PSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +A        ++   F  A+    +A NPC +      K    R       Q F    
Sbjct: 181 VPAASHRRIVFGTVSAAFGAALDDGLIAKNPCKARSIQIPKPIPTRVTPWTTRQVFGVRA 240

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------- 233
           +   + R   +     GLR  +        L      +        I             
Sbjct: 241 ALPERLRATVDVAGGCGLRQGEVFGLSEDELDFEGGWLSVNHQLKRIRGKFVFALPKGAK 300

Query: 234 ----------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS------I 271
                             +        L            +                   
Sbjct: 301 VRDVPLPDTVADALQEHRQKYPSVAVTLPWRTPDGPLVTKSLIFSGSTRDHVRVSHFNDH 360

Query: 272 WFKAKATKAGV-------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD- 317
            +K      G+                 H +R F A++  DAG     L    G      
Sbjct: 361 MWKPALAAVGIIPELVEGKHRSSPEHGMHALRHFYASVLLDAGENIRALSQYLGHADPGF 420

Query: 318 QAETYTK----GADRIRLGIKNS 336
              TYT        R R  I++ 
Sbjct: 421 TLRTYTHLMPSSEGRTRKAIESL 443


>gi|225018072|ref|ZP_03707264.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
 gi|224949069|gb|EEG30278.1| hypothetical protein CLOSTMETH_02009 [Clostridium methylpentosum
           DSM 5476]
          Length = 462

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 75/275 (27%), Gaps = 40/275 (14%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +I            T          R     +       +  +   AV+ + +  NPC 
Sbjct: 182 RRICEAFHIKLQELFTP-----VDADRGLAAKTINSHHRLLSSMLNTAVQWQIIFSNPCD 236

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ 218
            V+ PK + +  R   ++   Q  +      +        L+Y+G+R  + C        
Sbjct: 237 RVKPPKLERKEARYLDEKQTAQLITCLQREPEQYQTMVLLLIYTGMRRGELCGLEWPDFD 296

Query: 219 NNI-----------------FSIKTQKTGTIITVELPDGFMKLLAMT------------- 248
                               F   T+   +   ++L D  +KLL                
Sbjct: 297 MEHKLLYIQRESLYLPDRGIFEDTTKTYSSTRVIKLSDEAVKLLIQHKFAQNAERAKLGD 356

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
             +     F     + ++    + WF     K  +   S H +R  +AT+    G     
Sbjct: 357 AWVDTGKIFTTCTGKPIHPDTLTTWFHKFVQKNDLPPVSVHSLRHTNATLLIANGVNLTT 416

Query: 307 LMATYGWKTV-DQAETYTKGADRI-RLGIKNSRRI 339
           +    G        + Y         +  +  + I
Sbjct: 417 VAGRLGHADTGTTTKVYAHAIKTADEMAAETIQNI 451



 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/108 (9%), Positives = 24/108 (22%), Gaps = 6/108 (5%)

Query: 29  HGRRIRLPYPHEST---FIPAYMSALTGST---PKREYINSPRKKPTTLKWLISEYRKSA 82
            G++IR     +             L        +             L      +    
Sbjct: 22  GGKQIRQHMTWKPAPGMTKRQIEKELERQKVLFEENCRSGQFISGSIKLADFAQRWMSEY 81

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
               L   +   +     +I+   G     K+   H+    ++   + 
Sbjct: 82  AEKHLKAKTIAHYNELLKRILPALGHIKLDKLQPHHLIQFYDNLSESG 129


>gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|194437263|ref|ZP_03069361.1| phage integrase family protein [Escherichia coli 101-1]
 gi|194423819|gb|EDX39808.1| phage integrase family protein [Escherichia coli 101-1]
          Length = 365

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPQKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|302039265|ref|YP_003799587.1| putative phage integrase [Candidatus Nitrospira defluvii]
 gi|300607329|emb|CBK43662.1| putative Phage integrase [Candidatus Nitrospira defluvii]
          Length = 391

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 95/331 (28%), Gaps = 26/331 (7%)

Query: 25  FRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKS 81
           FR    R R  L Y            A+       +    P    T  T    + +Y   
Sbjct: 18  FRYRGVRYRPVLGYNLTP---DQEHEAMVQVLAAIQSQIRPDATTTGLTFAQFVPKYLDR 74

Query: 82  AHWGSLA----VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAI 134
            +  +LA      + ++       ++   G    + +  +   + +  R+       +  
Sbjct: 75  LNGKALAALDRPRTILT-----RHLVPFFGIRPLQSMKLEDGVAYIAHRRAEMAADGTIR 129

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           +    +  L  +AV  E +  N  L+++ P            +  + ++ +       + 
Sbjct: 130 RECGVLLGLLNYAVANEDLDKNRLLALDLPAGAQRTRVA---KPWELYRIYHLSAPAIQR 186

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---FMKLLAMTPIG 251
                L +GLR +       + +                   +P+         +     
Sbjct: 187 MMMLALLTGLREAKIIAIDQEWIIEPADGEWLIPVQGSRLKRVPEELPLSPLAASFLRGT 246

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310
                     Q  +A  F   +     +AGV +   H +R  +AT   +AG         
Sbjct: 247 LPRIGGRFFSQWRDAGSFKHRWAEACARAGVQDLHFHDLRHTAATWLCEAGVEYATTEKL 306

Query: 311 YGWKTVDQAETYTKG-ADRIRLGIKNSRRIS 340
            G +     E Y      ++R+ +     I+
Sbjct: 307 LGHRLPGMGELYMHNWKPKLRMAVTTLEAIA 337


>gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium]
          Length = 117

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 27  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 86

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 87  TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117


>gi|167571697|ref|ZP_02364571.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786]
          Length = 151

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 11/148 (7%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           + +G R ++      Q +           +  K G    V L  G +  L          
Sbjct: 1   MSTGCRKNELLALKWQRVDFEHSHLRLDCEHTKNGKRRLVPLNSGAVSALRDQRDWVSRN 60

Query: 256 FINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
             ++D    + +          F A   +AG+     H +R   A+     G + + +  
Sbjct: 61  CADSDWVFASGSGRRISTLQKGFVAACARAGIENFRIHDLRHTFASWLVMEGVSLYVVKD 120

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
             G  ++   E Y   + D+ R  ++  
Sbjct: 121 LLGHSSITVTERYAHLSPDQGRAAVQKL 148


>gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           + C+         + +    +           +    +  +   T +  +       +  
Sbjct: 38  IECTRRLHEQDLAVGHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHH 97

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +      K     AG+ K  S H +R   AT   ++G     +    G K V     
Sbjct: 98  IGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMI 157

Query: 322 YTKGA 326
           YT   
Sbjct: 158 YTHVL 162


>gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
 gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01]
          Length = 308

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/298 (10%), Positives = 77/298 (25%), Gaps = 55/298 (18%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT-SMRVL 143
              A  +  S+  +  + I          +    +   +         A++    ++  +
Sbjct: 4   RHYANKTIESYLFWIKRFITFHQLAHPSTLAEDDVIQFLSYLAVEEKVAVKTQALALNSI 63

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
                      ++  +  ++   + +     T+E+++  +       + RL  + L  SG
Sbjct: 64  SFLYRDYFKTPLSLDMRFQKSLTEKKLPVVLTREEIR--RFVQHIDPRYRLHIQLLYGSG 121

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQ-----------------------------KTGTIIT 234
           LR  +  R  VQ +  +  +++                                      
Sbjct: 122 LRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPLKAQVNLARNYYFKDRH 181

Query: 235 VELP-----------DGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKA 275
           +                    L                       +  +N +      K 
Sbjct: 182 MPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGELRRHHINESAIQRAVKR 241

Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRI 329
            A+ A + K+   H +R   AT   ++GA    +    G   V   + YT     +  
Sbjct: 242 AASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTAAHHVNHK 299


>gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 75

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330
             +  + H  R   AT+  ++G     +    G  ++   + YT  + D+ R
Sbjct: 11  LEIKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVSMDKQR 62


>gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 328

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 88/303 (29%), Gaps = 49/303 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
           +     R    T+      Y+        +  +   +  +    +        DF   ++
Sbjct: 15  QRKKRNRDSKKTI---FEIYK--------SEKTIKDYMFHLKDFLHFVYDGENDFSISEV 63

Query: 115 TT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                         +I    E R+   +S    L++++ L+K    +        + + +
Sbjct: 64  IPLMQDIEKEDVEAYIVHLFEDRQLKKTSVNTILSALKSLYKELESKGLKNPVKYIKLFK 123

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH--- 216
             R  E I   + +D+++    +   S    +       L Y+G+R  +      +H   
Sbjct: 124 VNRNIENILKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLQFKHYLK 183

Query: 217 ---------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINND 260
                    ++        +     +  +L +    L++M                   D
Sbjct: 184 REDEYFFKLIETKSGKDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSILD 243

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    +   +      G + S H +R   AT  + +GA   E+    G       E
Sbjct: 244 NSPLSYRSLNAIIQDMGKLIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTE 303

Query: 321 TYT 323
            Y 
Sbjct: 304 VYI 306


>gi|294012026|ref|YP_003545486.1| putative integrase [Sphingobium japonicum UT26S]
 gi|292675356|dbj|BAI96874.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 451

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 92/368 (25%), Gaps = 49/368 (13%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHG-RRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           P         GK  Y   +R G   RR  +      T   A   A               
Sbjct: 27  PGFGLRVFASGKRSYLVQYRAGGRSRRYTIGLHGVWTAETARQEAKVQLGRIAHGDNPAE 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSRISFE-SYFDQIIRKSGDFDY 111
                 K  T+K L + Y    +               + ++        II   G    
Sbjct: 87  ERQLDHKALTIKELCALYVADLNAGLILGKGGRPKKQTTIVTDSGRIERHIIPLLGARRV 146

Query: 112 RKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQE 151
           + +T   +   ++                      +  P +A + +  +  +  +AV   
Sbjct: 147 KDLTKADVNKLMKDIIAGKSRISVKTKKLRGRAIVRGGPGTATRTIGLLGGILTYAVDAG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRC 206
            +  NP   V++PK      R    E     +         + A        +  +G R 
Sbjct: 207 IIETNPTHGVKKPKYAIRTRRLTEDEYRTLGEMLREAVKTEKYATTVEIIRQIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           S+               ++   +    +V      +              +         
Sbjct: 267 SEIIGLKWAEADTASSCLRLSDSKEGESVRPIGLPVVEFLDERRKVLDGSVGTYVFPGPR 326

Query: 267 T------QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   F   ++     + + + + H +R   A+I+ D G T   + A  G       
Sbjct: 327 AEDGAFGGFPNHWEQIFRNSALADVTPHVLRHSFASIANDLGFTEVTIAALVGHAKGSVT 386

Query: 320 ETYTKGAD 327
             Y    D
Sbjct: 387 SKYIHSLD 394


>gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4]
 gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4]
          Length = 321

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       +    +A + K  S H +R   AT   ++G     +    G + +   
Sbjct: 240 HHYYEKTLQAAIRKAVRRARIEKPASCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTT 299

Query: 320 ETYTKGADR 328
           + YT    R
Sbjct: 300 QIYTHVLKR 308


>gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33]
 gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33]
 gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33]
 gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33]
          Length = 385

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 91/334 (27%), Gaps = 27/334 (8%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
              R      H    +    +  +    + E      +  T L     +Y  S      +
Sbjct: 48  DKPRSPAEREHNKEALRIAEAVRSKRLLESETSKHKLEDRTKLSASFFDYYDSVTDSKAS 107

Query: 89  VNSRISFESYFD---QIIRKSG--DFDYRKITTKHIRSGVESRKHTPSS----------A 133
             S+ ++  +      + R  G  +  +  I    +         + ++           
Sbjct: 108 -GSKSNYSIWVSAGHHLRRYHGRAELTFEDIDRAFLEGFKTYLLKSATTKSDQLLSRNTV 166

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
             +   +R     A ++  +  NP  +V+  K +T      T E+++            +
Sbjct: 167 SSYFNKIRAALNQAYQEGIIRDNPVRTVKSVKPETNQRVYLTLEEIKAMAKAECRYDVLK 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            AF F   +GLR SD  +     ++        +       ++     ++ L +      
Sbjct: 227 RAFLFSCTTGLRWSDIQKLVWSEVEEFEQGH-FRIIFKQKKIQNRGTALQYLDLPDSAVR 285

Query: 254 TFFINNDKQKMNATQFSI------WFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305
                 D  +                   A  AG+  + + H  R   A      G   +
Sbjct: 286 LMGERKDNDERVFKALRYSSYTNVALLHWAMLAGITKHVTFHAGRHSFAVNQLARGLDIY 345

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            L    G   +   E Y    D+ R      R  
Sbjct: 346 SLSRLLGHSELKTTEIYADILDQRRR--DAMRSF 377


>gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium]
          Length = 163

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +   + I  +       +  +  +   +  KA A  +G+    + H +R   AT 
Sbjct: 74  WIWQYVFPSSRISTDPRSQVRRRHHVEESSLQLAVKAAARASGICKPATCHSLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|312115205|ref|YP_004012801.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220334|gb|ADP71702.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 427

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/392 (12%), Positives = 119/392 (30%), Gaps = 44/392 (11%)

Query: 1   MTP---SLRLPPFV----TKERTRHGKIIYYFRKGHGRRIR---------LPYPHESTFI 44
           M P      +P  +           G   +  R   G + R         +         
Sbjct: 13  MRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYRVGGQTRKLTLGTYPAIGLKPARDLA 72

Query: 45  PAYMSALTGSTPKREYINSPRKK------PTTLKWLISEYRKSAHWGSLAVNSRISFESY 98
              ++A+       +   + ++K         ++ + + + +               E  
Sbjct: 73  STALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKETHIRETERI 132

Query: 99  FDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAI 155
             + I+          IT   +   +++  +   P+ A + L+++R +  WAV + ++A+
Sbjct: 133 LQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWAVDRSFIAV 192

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGV 214
           +PC  ++ P  +    R  ++++M+     +     P      LL  +  R  +      
Sbjct: 193 SPCHGIKAPASEKSRDRLLSEDEMRAAWLAFEATGWPFGPLAKLLLATAQRRDEVADMRW 252

Query: 215 QHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
             +              K G    V L +  + +L   P                     
Sbjct: 253 SEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAGVSDYVFTTTGKTPVSGF 312

Query: 271 IWFKAKATKA-------GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD---QA 319
              K    +        G+   + H +R+ +A+      +  H + A    K+      +
Sbjct: 313 SRAKKAFDEQITRQLGEGIPGWTLHDLRRTAASGMTALKSPPHVVDAVLNHKSGTIKGVS 372

Query: 320 ETYTK--GADRIRLGIKNSRR-ISSVVDSDDP 348
             Y +   A   R  +      +++++ S+ P
Sbjct: 373 AVYMRYGYAAEKRTALDAWGHFLTTIISSNTP 404


>gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 381

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 25/301 (8%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHW---GSLAVNSRISFESYFDQIIRKS-----GD 108
            +E      K   TL  +     +S       ++   +  +F                GD
Sbjct: 55  LKEQYQHQNKPTPTLIEVYQSVCESKEALQGKTIGKATVRAFRDSRKNFALFLKKRGSGD 114

Query: 109 FDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVE 162
              ++     I            +  S+    L  +  + + A+++ Y+  +P     +E
Sbjct: 115 CLPKEADKDLIEHYRLFMLRDLGNKESTVSNRLRHLHQVIRKALQERYIREDPFEQIDIE 174

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P  +   +       +  ++   S  +  RL F    ++GL  SD  +  +  +     
Sbjct: 175 TPTYERNALTSDDLHKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDD 234

Query: 223 SIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             +            ++       + +       +   +   +     + F+   +    
Sbjct: 235 GRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGLLFREFP-TNSHFNRKIRDIII 293

Query: 279 KAGVN----KSAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           KAG+      ++H  R   AT I  + G     +    G + +   E Y K   + ++  
Sbjct: 294 KAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAR 352

Query: 334 K 334
           +
Sbjct: 353 E 353


>gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 421

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 86/287 (29%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------ 121
           LI  Y      ++     ++   +  +F       ++            K          
Sbjct: 109 LIEIYQAVCESKEELQGKTIGKATVRAFRDSKKSFVQFLKTRRNEDCLPKEADKDLIESY 168

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
               +    +  S+    L  +  + + A ++ Y+  +P     +E P  +   +     
Sbjct: 169 RLFMLSDLGNKESTVSNRLRHLHQVIRKAQQERYIREDPFELIDIETPTYERNALTSDDL 228

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  ++   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 229 HKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQN 288

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            ++       + +       +   +   +     + F+   +    KAG+      ++H 
Sbjct: 289 RSIVPLLPIAEEILTIVSDGQKEGLLFREFP-TNSHFNRKIRDIIIKAGLPSHTEATSHT 347

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 348 ARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIARE 393


>gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
 gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697]
          Length = 416

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 73/258 (28%), Gaps = 16/258 (6%)

Query: 88  AVNSRIS---FESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK----HTPSSAIQFLT 138
           + ++  +   ++ Y    +   G  D     IT +   S     K      PS   + L 
Sbjct: 124 STSTYRNSKYYQKYLKDYLTSLGKEDIEFSDITEEFGSSYKAFLKRYKNFGPSQMNKCLC 183

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLA 195
            +  L   AV  E +  NP   +E  K+     R  ++ +++               R A
Sbjct: 184 WLSKLVYLAVDYEILRANPLEDMEYEKKPAPKHRHISRAELKAILETPMLDPLQELGRRA 243

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKE 253
           F F +++GL   D       H+       +  +     T       +  +A     +   
Sbjct: 244 FLFSIFTGLAYVDIMLLHPHHIGTTADGRRYIRINRKKTNVEAFIPLHPIAEQILDLYNT 303

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311
           T          +  +            G     S H  R    T     G     +    
Sbjct: 304 TDDTKPVFPLPSRDEMWFEIHELGVAIGRKENLSYHQSRHSFGTFLISEGIPIESIARMM 363

Query: 312 GWKTVDQAETYTKGADRI 329
           G   +   + Y +  D+ 
Sbjct: 364 GHSGIKTTQRYAEITDKK 381


>gi|217978247|ref|YP_002362394.1| integrase family protein [Methylocella silvestris BL2]
 gi|217503623|gb|ACK51032.1| integrase family protein [Methylocella silvestris BL2]
          Length = 400

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 96/332 (28%), Gaps = 25/332 (7%)

Query: 9   PFVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGST--------PK 57
             +       G   + +R   +G  +++ +          A   AL  +T          
Sbjct: 28  RGLYFVVQPSGAKSWAYRFSFEGKPKKLTIGSYPAIDLSRARSIALASATKVANGRNPAA 87

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR----ISFESYFDQ-IIRKSGDFDYR 112
            + +   + +  +   L+           +   +R       +    + I+ +       
Sbjct: 88  EKKVEREKARKPSDLDLVDVVVAQFVVKHVEPKTRPQSAKEMKRILKREILSRWSGRRLT 147

Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +IT   IR  +E+     P  A +    +  L  W++  E ++ +P   + +P       
Sbjct: 148 EITRSDIRDLLEAIADRAPIMANRVFEVISSLINWSISMEMLSASPIAGLRKPSPAKRRD 207

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSI----KT 226
           R  +++++            P  +   +L  SG R S+        +     S       
Sbjct: 208 RILSEKELTDVWQASERAGWPYGSMIKVLILSGQRRSEVSDMTWSEIDFEERSWTLPAVR 267

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT---KAGVN 283
            K G    + L    + +L   P               +  +     K       ++  N
Sbjct: 268 TKNGKGHIIPLSPTIIDVLLTLPRIGSESGFVFTTNGFSPIRNFARRKKALMMSCQSENN 327

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT 315
            + H +R+  AT  A        +       +
Sbjct: 328 WTLHDLRRTFATGMARLKVELPVVEKLLNHSS 359


>gi|163790313|ref|ZP_02184745.1| integrase [Carnobacterium sp. AT7]
 gi|159874384|gb|EDP68456.1| integrase [Carnobacterium sp. AT7]
          Length = 382

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 125/380 (32%), Gaps = 54/380 (14%)

Query: 11  VTKERTRHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRK 66
           +  E   +GK  Y  R       +  ++     S    A+  A    +    + I +  +
Sbjct: 1   MWIETLDNGKFKYVERYIDPMTEKYKKISITMTSDSRVAWNKAQRELNNRIDKKIKTISQ 60

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVES 125
              T   + +++ +  +   +  N+ +        I R   D    R I +  I+  +ES
Sbjct: 61  SDITFGEITTKW-QHVYKNRVKPNTYLRSTLTLKIIKRYIPDDYIVRNINSVFIQETIES 119

Query: 126 RKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
             +T     SS  Q  T +  + ++A ++  +A+NP L VE  K+     +     +   
Sbjct: 120 IYYTENYSFSSTKQCKTLLNSILEFAKKKTIIAVNPVLEVEIKKKPKTFEQIEKIGNKYL 179

Query: 181 ---------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                         +  G +     EFL  +GLR  ++      + +N+   +       
Sbjct: 180 EPDELKTVLDCLRSFKSGRRNANLTEFLSLTGLRFGEAVALTYDNFKNDFIEVNGTLDYH 239

Query: 232 I-----------------ITVELPDGFMKLLAM------------TPIGKETFFINNDKQ 262
                               V+L D   +++                  K   F+     
Sbjct: 240 THKSSAGIKTTAKTGKANRNVDLSDRAKEIIIEVILENKLLKKEEHFQEKNYIFVTKYGN 299

Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++   ++   K  A K G+ K  ++H +R    +I ++ G     +M   G +  +   
Sbjct: 300 PIDIATYNTSLKIAAKKCGIEKNLTSHVLRHTHISILSEIGVPLKAIMDRVGHERPETTL 359

Query: 321 -TYTKGADRIRLGIKNSRRI 339
             YT      ++     +++
Sbjct: 360 GIYTHVT--KKMQQGVMQKL 377


>gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 316

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 32/288 (11%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  +         + N+  S+ +             YR +T ++++S       ++ PS+
Sbjct: 32  LQYFHDFLQRRGSSANTIDSYLTSVRHF-----HSLYRDVTVENLQSYKAWLMERYKPST 86

Query: 133 AIQFLTSMRVLFKWAVRQEYVAI----------NPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +  +            ++           +     + P  + +          ++ 
Sbjct: 87  VNTRIYGINQYVAALQSGGDISDTGPYTPAASIDFLEPYKLPSVRHQQKPFLNNVISKRD 146

Query: 183 KSFWSEGSQPRLAFEFLLY-------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 G + R    F  +       +G R S+  +   +H+Q     + ++        
Sbjct: 147 YERLKRGLK-RDNNMFWYFVVRFLGATGARVSELIQIKAEHMQIGCMDLYSKGGKVRRIY 205

Query: 236 EL---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS--AHGV 289
                    +  L    I     F N     +     S   K  A K  +   +   H  
Sbjct: 206 FPEKLCGEMLSWLDSRQIQTGFIFTNRRGNPITPRGISSQLKVLAKKYRICPDTVYPHSF 265

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
           R   A            L    G ++++    Y T+ +D  R  I   
Sbjct: 266 RHRFAKNFLTKFNDISLLADLMGHESIETTRIYLTRSSDEQRELIDRI 313


>gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           + C+         + +    +           +    +  +   T +  +       +  
Sbjct: 38  IECARRLHEQDLAVGHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHH 97

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +      K     AG+ K  S H +R   AT   ++G     +    G K V     
Sbjct: 98  IGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMI 157

Query: 322 YTKGA 326
           YT   
Sbjct: 158 YTHVL 162


>gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv.
           campestris]
 gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 327

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVS 67

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E   +   +  +RP          + E++ +  +     
Sbjct: 68  AGTQNQALAALLFLYREILGLELPWMENLVRAKRP---RRIPVVLSVEEVTRLLT--MLE 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------------KT 229
              RL    L  SG+R  +  R  ++ +      I  +                      
Sbjct: 123 GACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQ 182

Query: 230 GTIITVELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--- 276
                + L    +            LA      +                          
Sbjct: 183 QRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPGARRSVDPRSGRVGLH 242

Query: 277 --------------ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
                           +AG++K  + H +R   AT   +AG     +    G K V   +
Sbjct: 243 HVSEEIRQRAVHAARRRAGIDKPATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQ 302

Query: 321 TYTKGADRIRLGI 333
            YT    R    +
Sbjct: 303 IYTHVLGRGASAV 315


>gi|323138655|ref|ZP_08073722.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396143|gb|EFX98677.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 420

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 109/381 (28%), Gaps = 48/381 (12%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLP------------------YPHESTFIPAYM 48
           LP  +           Y F     +    P                     +        
Sbjct: 34  LPSGLRSFV-----WRYRFHNKTKKLTIGPVGLAEARRMARDARNLRDDGTDPALAKRAQ 88

Query: 49  S-ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106
             A      + E       +   ++ +I+ + +      L   +  +      + +    
Sbjct: 89  RVAKAEQARQLEREIKKLPEQDDVETVIAAFIERHCEPKL--RTGQAVARVLRKDVAGPW 146

Query: 107 GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                 +IT   +   ++       P  A + L+ +  L +WAV +  VA NPC  + +P
Sbjct: 147 KGRRLSEITRADVHELLDGLIDRGAPVQANRLLSYLNKLCRWAVSRGIVAHNPCDGIGKP 206

Query: 165 KRKTEGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            ++    R     +++  +++    G         L+ +G R S+   A       +  +
Sbjct: 207 SQEKSRDRVLDDHELRLVWRAAGELGWPFAPIIRLLILTGQRKSEVAEATWSEFDLDARA 266

Query: 224 IKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSI 271
            +          + TV L    + LL   P  +    +                     +
Sbjct: 267 WRIPPERVKNKRLHTVPLSPQAVALLKNLPRIQSASDLVFTTTGKTSVSGFSRAKRNIDV 326

Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG-- 325
             K       +   + H +R+ +A+  A  GA  H +       +         Y +   
Sbjct: 327 AVKVLNAGTQIPAWTIHDLRRSAASGLAKNGAELHVIERVLNHVSGAFAGVVGVYQRHTF 386

Query: 326 ADRIRLGIKNSRRISSVVDSD 346
           AD +R  +    R    + S+
Sbjct: 387 ADEMRAALDAWGRHIEQITSE 407


>gi|261493745|ref|ZP_05990262.1| bifunctional single-stranded DNA-binding protein/integrase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496159|ref|ZP_05992566.1| bifunctional single-stranded DNA-binding protein/integrase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308191|gb|EEY09487.1| bifunctional single-stranded DNA-binding protein/integrase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310590|gb|EEY11776.1| bifunctional single-stranded DNA-binding protein/integrase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 331

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 92/321 (28%), Gaps = 22/321 (6%)

Query: 17  RHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + G + Y   +     R  R            Y   L     + + ++   K     +  
Sbjct: 5   KRGDVYYIDLYTPSGERIRRTIKTTVKKEAQQYHDKLKAQLWQIDKLDQ--KPDYLFENA 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
           +  + K A       +++     +               +T+  I   +  R        
Sbjct: 63  LVLFLKDAEGKE-DTSTKK---RHAIYYRNIFAGRILSSLTSDEILEAIPERHMLKGTPL 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           T S+  ++ TS+  + K A +  Y+   P +  ++   +      W  ++  +       
Sbjct: 119 TNSTKNKYRTSIMRILKLAYQAGYIDKMPFIPKKK---EPPIRVRWITKEQAKQFINNIS 175

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKL 244
               +    F L +G R ++        +                    ++ L D  ++L
Sbjct: 176 TDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARSLLLNDDALEL 235

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           L         +     K +         F     K  + +   H +R   A+    AG  
Sbjct: 236 LQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRHTWASWHVQAGTP 295

Query: 304 AHELMATYGWKTVDQAETYTK 324
              L    GW+T++  + Y  
Sbjct: 296 LFTLKELGGWETLEMVKKYAH 316


>gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 371

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 91/320 (28%), Gaps = 33/320 (10%)

Query: 42  TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
                + +A++                   + +++E            +    +     +
Sbjct: 54  QRERDFNAAMSEKAEAIRCRR--------FEAIVNERYDFFDKRKYKADFLEYYRKQLRK 105

Query: 102 IIRKSG------------DFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTS 139
             +K G               + +I         E            + + +SA  + ++
Sbjct: 106 HDQKWGFVYQHFYNFVHGKCTFEEIDVDLCNKFREYLLNAKQLRRDGQISKNSASGYWST 165

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
            R   K   R   +  N    +E+ + +       + E++        +    + A  F 
Sbjct: 166 FRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEELYCLAETPCKIPVLKTASLFS 225

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
             + LR SD      + + +     K   T T  T       +   A+  IG        
Sbjct: 226 CLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEALELIGYSPEKKGL 285

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             + +  +      K     AG+ K  + H  R+  AT+ A AG     + +    K++ 
Sbjct: 286 VFKGLKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTDIRTIQSNMAHKSIT 345

Query: 318 QAETYTKGAD-RIRLGIKNS 336
             + Y K  D   R      
Sbjct: 346 TTQRYMKVVDSNKREATTKI 365


>gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406]
 gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406]
          Length = 411

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 21/287 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            ++ K    G    ++   + + +  +           D   +++T   I       +  
Sbjct: 118 EDFFKQVDAGLRCPSTYNKYCTVYKHLEEFIKTRYRVSDIALKELTPAFITDFDIFLRTE 177

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  +      +R +   A    ++  +P +       ++      TK++++Q    
Sbjct: 178 KQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTKDEIRQLLDL 236

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R  + F  ++GL  +D       +LQ +        T    T    +  +
Sbjct: 237 KFRRKSMELARDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIML 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT-IS 297
             +    I K      ++      T  +     K      G+ K  + H  R   AT I 
Sbjct: 297 LDIPKQIIDKYDGMAKDNLLLPVPTYITACKNIKKIIGLCGIEKEITWHTSRHTMATEIC 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
              G     L    G   +   + Y K       R     S ++S +
Sbjct: 357 LTNGVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDKLSKI 403


>gi|194447018|ref|YP_002039152.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194447281|ref|YP_002043943.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194358462|gb|ACF56906.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194405585|gb|ACF65806.1| shufflon-specific DNA recombinase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 395

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 14  SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 70

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 71  YRDVRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 130

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 131 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 190

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 191 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 247

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 248 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 284


>gi|298381746|ref|ZP_06991345.1| site-specific recombinase [Escherichia coli FVEC1302]
 gi|298279188|gb|EFI20702.1| site-specific recombinase [Escherichia coli FVEC1302]
          Length = 416

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMTEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPPDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAYMLQQWADMIDSWIDGEH 398


>gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 267

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 2   VTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 57  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKVDGYEE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H+Q     + ++           +      K L    
Sbjct: 114 YFIVWFMAATGARVSELLHIKAEHIQIGHLDLYSKGGKIRRLYIPKNLSTEAAKWLREIG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62]
          Length = 389

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 108/372 (29%), Gaps = 51/372 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GKI     K    + +            ++  L           +P      
Sbjct: 17  IVSYKDSNGKIR-QKWKDTKLKKKGNKKRAEKIRDEFLLELESQLAMECECANP---DLL 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESR- 126
               +  Y + +    +A N+ + ++ Y  ++I +          ++   H++   +   
Sbjct: 73  FYDYLLNYLEVSK-KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYML 131

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T ++ I +   +R   + AV  E ++ N    V +PK+K    + + + ++ +   
Sbjct: 132 NDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLD 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             SE  +  L      + GLR S+        +      I                    
Sbjct: 192 ILSEE-KLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKD 250

Query: 233 --------ITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNATQ 268
                    T+ L +   + L      ++                  F   D + M    
Sbjct: 251 QTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQY 310

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
            +        K G+ K   H +R  +A+I  D+G     +    G  +       YT   
Sbjct: 311 VTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGENMKSIQEWLGHASYSTTANLYTHLT 370

Query: 326 ADRIRLGIKNSR 337
           A       +   
Sbjct: 371 AGVKERAAEALE 382


>gi|282863496|ref|ZP_06272555.1| integrase family protein [Streptomyces sp. ACTE]
 gi|282561831|gb|EFB67374.1| integrase family protein [Streptomyces sp. ACTE]
          Length = 588

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 106/375 (28%), Gaps = 66/375 (17%)

Query: 17  RHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + G+   Y   G         R         +   +  L     K     + +    TL+
Sbjct: 22  KDGRWHGYVTVGVKDDGKPDRRHVSRKTRPEVTRVVRELERQRDKGTVRRAGQS--WTLE 79

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             ++ + ++     ++ N+   +    +  +I   G     K+  +H+    +  + + S
Sbjct: 80  TWLTHWVENIAAAHVSENTIDGYRVAVNHHLIPGLGAHRLEKLQPEHLERFYKKMQDSGS 139

Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +A Q   ++R     AVR+ ++A+NP    + P+ + E + P++  +  Q     + 
Sbjct: 140 SAGTAHQVHRTLRTALNEAVRRAHLAVNPATIAKAPRLEEEEVEPYS-VEEVQHLLAEAA 198

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKTQKTGTIITVELPD 239
             +    +   L  GLR  +        +                + +          P 
Sbjct: 199 KHRNTARWVIALALGLRQGEVLGMQWGDVDFDLGVIRVRRGRLRPRYKHGCGERCGRKPG 258

Query: 240 GFMKLLAMT------------------------------------------PIGKETFFI 257
              + +                                                K   F 
Sbjct: 259 FCPQKINTRRETKNAKSRAGQRPIGAPDELLQLLRQHKEEQARERARARDLWTEKGYVFT 318

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW--- 313
           +   + +N       +K     AGV +   H  R  +AT+    G     + A  GW   
Sbjct: 319 SPTGEPLNPNTDFHKWKELLKAAGVRDARLHDARHTAATVLLILGVPDAVVDAIMGWEPG 378

Query: 314 KTVDQAETYTKGADR 328
           K+      Y     R
Sbjct: 379 KSARMRRRYQHLTSR 393


>gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13]
 gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19]
 gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3]
 gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13]
 gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19]
 gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 89/283 (31%), Gaps = 27/283 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHT 129
           +  Y           +S  S++   +  I+ SG  +  Y  I   ++             
Sbjct: 10  VRRYMSQLR-EEKRYSSAKSYQDALNSFIKYSGTENISYSDINKANLHRYEAYLLENDCM 68

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE 188
            ++   ++  +R ++  AV        P L            +   + E+  +  +   E
Sbjct: 69  RNTVSTYIRRLRCIYNKAVENGDAEYIPGLFQGVFTGVESKRKKSLSLENQHKLMTVKVE 128

Query: 189 GSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234
               R    +      Y+G+   D      ++++N I     QKTGT +           
Sbjct: 129 SEVLRETQLVVCLLFQYAGMSFVDFAHLKERNIKNGILDYNRQKTGTPMRLEILDTAELM 188

Query: 235 ----VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               +         L     G +T +    +     ++F+   KA    AG+  + +++ 
Sbjct: 189 RKELMGDKKPASGYLFPFLSGTKTGYEAYLEYNAALSRFNRNLKALKKAAGIASDVTSYT 248

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
           +R   A    +       +    G K++   + Y +     ++
Sbjct: 249 IRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKM 291


>gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
 gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein
           [Marinobacter sp. ELB17]
          Length = 283

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 74/253 (29%), Gaps = 19/253 (7%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140
              +  ++ S+      + R        ++  + +          R  +P+S   +L  +
Sbjct: 15  HGFSPRTQHSYLYVVTALARYY-RRSPDQLKVEDLHVFFNYLVQERSLSPASCRVYLHGI 73

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R L+      + +            ++ + I                   + +       
Sbjct: 74  RFLY-----LKVLHWAHFDVTLVLPKRPQRIPELLTRQEVTRLLAAVLNPKHQALLSVTY 128

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETFFIN 258
             GLR S++    V+ +      ++ ++        V L  G ++ L      +      
Sbjct: 129 GCGLRVSEAVALKVKDIDGERHLLRIEQGKGAKDRMVPLAPGVLQALRRYWQIRHPMLWL 188

Query: 259 N-----DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311
                   + ++ T     +    T +G+ K    H +R   AT   + G   HEL    
Sbjct: 189 FSSDLLPDRHLHITTPQKVYHTAKTTSGIEKCGGIHALRHAYATHQLERGLPIHELQRLL 248

Query: 312 GWKTVDQAETYTK 324
           G   +   + Y  
Sbjct: 249 GHSDLRSTQRYLH 261


>gi|312965641|ref|ZP_07779870.1| phage integrase family protein [Escherichia coli 2362-75]
 gi|312289615|gb|EFR17506.1| phage integrase family protein [Escherichia coli 2362-75]
          Length = 365

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKEPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|91784092|ref|YP_559298.1| putative phage integrase [Burkholderia xenovorans LB400]
 gi|91688046|gb|ABE31246.1| Putative phage integrase [Burkholderia xenovorans LB400]
          Length = 446

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 30/332 (9%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             A      G++P R  +    +     T      +Y   A   +LA ++R   +S +++
Sbjct: 86  AQARREIQQGNSPSRSKVEKRVQANDAFTFGNWAEKYFAEA---TLADSTRSMRKSVYER 142

Query: 102 -IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPC 158
            +  +       +IT   + +  E  K   ++A        +  +F++   +     NP 
Sbjct: 143 NLASEFDKLKLEEITPARLMARCEKIKARGAAAQAIHAREIVLQVFRFVQARGIKVDNPA 202

Query: 159 LSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            S+      T   R                   +  S  RLA +F+L + +R S+   A 
Sbjct: 203 ASIRPSAIATFKARDRALNPEEIHVFFNVLEQVATMSTLRLAVKFMLLTLVRKSEFIDAT 262

Query: 214 VQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           +  K G    V L +  +++L             +  +   A+  
Sbjct: 263 WDEVDFEAATWTIPKERMKAGRPHRVYLSEQALEILVAFKTCFGASMYLHPGRYETASPI 322

Query: 270 SIWFKAKATKAGVNK-----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           S     +   + V             + H +R+ ++T+  +AG     +      +    
Sbjct: 323 SAATLNRVIDSTVKLINDRGDEFESFTVHDLRRTASTLLHEAGFNTDWIEKCLAHEQRGV 382

Query: 319 AETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
              Y K   AD+ R  ++    +      + P
Sbjct: 383 RAIYNKAEYADQRRTMLQAWADMVDRWIKEKP 414


>gi|218689545|ref|YP_002397757.1| integrase of prophage [Escherichia coli ED1a]
 gi|218427109|emb|CAR07991.2| integrase of prophage [Escherichia coli ED1a]
          Length = 409

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 109/360 (30%), Gaps = 31/360 (8%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKRE--YI 61
            GK+ +Y  +R G GR     RI+L    + +   A   A         G  P+ E  Y 
Sbjct: 40  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKAAREKAAQCRTWLAEGKNPRHEMNYT 99

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                KP T+   ++ + +S    +  V+         + +I++ G     K   +H  +
Sbjct: 100 VQEALKPVTVGDALTYWLESYVKEN-RVDYIALKRRLNNHVIQQIGAMPLDKCELRHWLA 158

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPW 174
             +   K TP +A   L + +   K+  R+ Y   N           ++P      +   
Sbjct: 159 CFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSNK 218

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 219 ELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKTK 278

Query: 235 VELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVR 290
           V +     + +            +      +       S + +    +    + S H +R
Sbjct: 279 VAIFRPIPEAILPFVTQLVEQNRHTGLLLGEAKQEASVSQYGRLAHRRLNHPHWSLHDIR 338

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
           +   T+  D G   H +    G +       Y      D  R  +     R+  +  + +
Sbjct: 339 RTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNVLDMWMERLGILAGTHE 398


>gi|260060855|ref|YP_003193935.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501]
 gi|88784985|gb|EAR16154.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501]
          Length = 353

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 102/354 (28%), Gaps = 34/354 (9%)

Query: 10  FVTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            +   + + G    Y        R     +IR+            ++    +  + E ++
Sbjct: 4   HLRSRKLKSGDRSLYLDIHHHGDRWREFLKIRISPKDSDRTEKKRIAERIRANRELELLS 63

Query: 63  SPRKKPTT------LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKI 114
                  +             Y  +  +            +   +     G+      +I
Sbjct: 64  QSTGHIPSHLTNLNFFDFAENYLSNYPFKD-----VRIVHNAVQKFKVALGNTRLTFAQI 118

Query: 115 TTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE- 169
           T K + +  +   H    T  +A  + T  + + K A  + Y+   P   +       + 
Sbjct: 119 TPKVMEAFKDYLIHESGLTGETAHNYFTRFKKILKAAKIKGYLREMPTADIRFANPNKDD 178

Query: 170 --GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               +    +++Q   +     S+ + AF F  Y+ L  ++       ++          
Sbjct: 179 TIRKQVLDTKELQILATTHCGNSEVKRAFLFACYTSLGLAEIKLLKWSNINKGRLITYRN 238

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285
           KTG II   L       L +    K         QK++    +   +    +AG+  + +
Sbjct: 239 KTGEIINNRLNPT---ALIILGEPKGRNEFVFQLQKLSNNGVNKAIEYWVKRAGIQKHIT 295

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +  R   A      GA    +    G  +      Y       +L  +   ++
Sbjct: 296 FYCARHTFACQLLIHGANLKTVADAMGHSSTQSTLKYLNYVQ--KLQDEAIDKL 347


>gi|317123190|ref|YP_004097302.1| integrase [Intrasporangium calvum DSM 43043]
 gi|315587278|gb|ADU46575.1| integrase family protein [Intrasporangium calvum DSM 43043]
          Length = 401

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 111/407 (27%), Gaps = 69/407 (16%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M         +   R  +   ++ +     R+ +  Y      +     AL     +   
Sbjct: 1   MARRHNGEGTIYPYRNGYAAQVWVYTPEGRRQRKTVYGKTREIVHEKWLALHAQARRGPV 60

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHI 119
                K    +    + + +     +LA  +  ++E +    I    G     ++  + +
Sbjct: 61  SPRTPK----VDEFATGWLRDVVTPNLAPATVANYELFVRHYISPAFGSKRLDRLGVRDV 116

Query: 120 RSGVESRKHT--------------PS---------------SAIQFLTSMRVLFKWAVRQ 150
           +  +   KHT              P                +  Q  T +R L   A+R+
Sbjct: 117 QVWLNELKHTCQCCAQGKDAAREVPRCCAKGKCCGQVASEWTIHQAWTVLRSLLSSAMRE 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDS 209
           E V+ N    V  P  + +    WT +  +QF      +       +  +L  GLR  + 
Sbjct: 177 ELVSRNVAGLVRVPVPRAKKPAVWTVDQARQFLESARRDDDPLYAGYVLMLILGLRRGEL 236

Query: 210 CRAGVQHLQNNIFSIKTQKTGTII------------------------------TVELPD 239
                  +   +   +       +                                 +  
Sbjct: 237 LGLAWDDVDLELGEARIAWQVQRVKGQLLRRKTKTTSSDAPLPLPEICVSALEQRRVVEA 296

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298
            +         G            ++   F  +FKA+ATKAGV   S H  R+  A++  
Sbjct: 297 KWRLAAGEAWAGAGLVMTTRLGDPLDPRNFHRYFKARATKAGVPVISVHATRRTCASLLV 356

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344
                    MA      +      Y++ +       +  +R+     
Sbjct: 357 ALDVHPRVAMAILRHSKIAVTMDIYSQVSSTSTR--EALKRLGEAFG 401


>gi|119490343|ref|ZP_01622821.1| Phage integrase [Lyngbya sp. PCC 8106]
 gi|119454002|gb|EAW35156.1| Phage integrase [Lyngbya sp. PCC 8106]
          Length = 312

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 83/284 (29%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVES-------RKHTPSSAIQ 135
             L   SR +     + I      G+ D   +    +R    +        +++ S+A +
Sbjct: 27  QGLGEGSRRTMRGALNTIAAILTNGECDANTLNWAALRYQHTAAIQAALLNRYSTSTAQK 86

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFW 186
            + ++R + + A + + +      +          +            +           
Sbjct: 87  MMAALRRVLEEARKLQLMDAESYSTAVDLLSIKVYVNLRGRALSQSEISALINVCQADPT 146

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S+G + R     L  SGLR ++  +  V+       ++K  ++       +      +  
Sbjct: 147 SQGVRDRALIAILRGSGLRRAEVVKLRVKDFNPVTGALKILQSKGRKDRTVYLPENAIAW 206

Query: 247 MTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +                        +++ M         K +A +AGV   S H  R+  
Sbjct: 207 VENWLDVRGRSPGPLLCPIRKGGKIERRYMTPQAVFFIMKKRALEAGVESFSPHDFRRTF 266

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
            +   DAG     +    G         Y +  +   R  ++  
Sbjct: 267 CSDLLDAGVDIVTVQKLAGHANPMTTANYDRRGEETKRKAVQKL 310


>gi|296453369|ref|YP_003660512.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182800|gb|ADG99681.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 557

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/408 (11%), Positives = 104/408 (25%), Gaps = 71/408 (17%)

Query: 4   SLRLPPFVTKERTRHGKIIY----------YFRKGH-----GRRIRLPYPHESTFI--PA 46
             R    + ++ + +G+I Y            +  H      +R    Y  ++      A
Sbjct: 13  RRRRFGKIERKVSANGQISYDASYIPPVEARAQYPHLPARIHKRFDEGYETQAEAWLNEA 72

Query: 47  YMSALTGSTPKREYINSPRKK-PTTLKWLISEYRKSAHWGSLAV---NSRISFESYFD-Q 101
                  +    E +++         +   ++Y +     +       ++  ++ Y    
Sbjct: 73  KRLIDLNAWAPPEVMDNADAGIKVLFRDYAADYVEKRRKANNEPIQQTTKEKYQQYLRDY 132

Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
           +    G+     I    IR   +S   T      S  + +  +            +    
Sbjct: 133 LNPVLGNRPMAAIRPVDIRQWYDSMHVTKDGRGESIRRHVFELLDGIMSHAANAPLDDAG 192

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL------YSGLRCSDSCR 211
              ++R   + +  RP TK   +       +    ++     L      + GLR  ++  
Sbjct: 193 TTLIKRNPVQFKVPRPATKHVYKIATYAQVQAIADQMPPSLALAVTLSGFLGLRQGEALG 252

Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-------------------------- 245
                 + N              +       ++L                          
Sbjct: 253 LQRHDFELNEQPPIVHIRRAATEILRNGHKEQILGSTKTPSSVRDIEIPAPLVPIIKRHL 312

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISA 298
                       F        +        F       G         H +R    T+ A
Sbjct: 313 EIYMDDKPTALVFTGTRTHGIVRGQSLRSAFIRAVKAVGDPDLQGMDFHDLRHSGLTLMA 372

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +AGAT  +LM   G   +     Y       +   +   ++ + ++S+
Sbjct: 373 EAGATVGQLMQRGGHTNIKTVAVY------QQSSAEAEAKLRAKIESN 414


>gi|138562|sp|P20709|VINT_BPL54 RecName: Full=Integrase
 gi|76013|pir||XSBPL5 excisionase - Staphylococcus phage L54a
 gi|215098|gb|AAA98161.1| excisionase [Staphylococcus phage L54a]
          Length = 354

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 101/353 (28%), Gaps = 60/353 (16%)

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG 107
                   K    +S   K  T   L+ E+ +         V +  + ++    I + S 
Sbjct: 3   RLEEKIKEKLNNKSSSELKTLTFHALLDEWLEYHIKTSGFKVTTLDNLKTRIKNIKKNSS 62

Query: 108 -DFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINP 157
            +    KI TK++++ +      ++ +   + L  M+         + +       ++  
Sbjct: 63  QNLLLNKIDTKYMQTFINELSNVYSANQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTL 122

Query: 158 CLSVERP--------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLR 205
               +          K           +      +  +   + R+    A E    +G+R
Sbjct: 123 PKKSKTIEDIEKEEAKMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMR 182

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---------------------- 243
             +     V+ +     +I    T   I      G                         
Sbjct: 183 IGELLALQVKDVDLKNKTIAINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLK 242

Query: 244 --LLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
             +L    + +           F       M  ++ +    + A    +NK  + H +R 
Sbjct: 243 KIMLENKKMQQWEPSYVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRH 302

Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
              ++ A+   +   +M   G +      + YT   +  ++  +  +++  +V
Sbjct: 303 THISLLAEMNISLKAIMKRVGHRDEKTTIKVYTHVTE--KMDRELEQKLEKLV 353


>gi|15830828|ref|NP_309601.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|30062660|ref|NP_836831.1| putative integrase of prophage CP-933C [Shigella flexneri 2a str.
           2457T]
 gi|168762521|ref|ZP_02787528.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217328138|ref|ZP_03444220.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|13361038|dbj|BAB34997.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|30040908|gb|AAP16638.1| putative integrase of prophage CP-933C [Shigella flexneri 2a str.
           2457T]
 gi|189367166|gb|EDU85582.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217318565|gb|EEC26991.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|313650417|gb|EFS14824.1| phage integrase family protein [Shigella flexneri 2a str. 2457T]
 gi|326339385|gb|EGD63197.1| Phage Integrase [Escherichia coli O157:H7 str. 1044]
          Length = 409

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 100/342 (29%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 104 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 162

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 163 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 222

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 223 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 282

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 283 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 342

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 343 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 384


>gi|328884022|emb|CCA57261.1| hypothetical protein SVEN_3975 [Streptomyces venezuelae ATCC 10712]
          Length = 398

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 107/359 (29%), Gaps = 40/359 (11%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R   G+    +    G+     +           +                K  T+L  
Sbjct: 31  KRQPPGRWRVRWYGPDGKGKAKTFGKLPQAEAEVHAITARLDKGSYRDPRSGKAATSL-- 88

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           +  E+ K+      +  ++  +    D  +I K GD+    I    + + V+   + P +
Sbjct: 89  VAEEWFKTL--RKQSRRTKNDYRELLDLYVIPKWGDWQVAAIQWDDVSTWVDDLINKPGA 146

Query: 133 AIQFLT---------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
           + + L+             + K A+R   +A+NP      P+   +    +   D  +  
Sbjct: 147 SGRPLSPGRIAKTFYVFGGVMKHAIRTHRIAVNPASEHTLPRPDEDDEHVYLTHDQVEAL 206

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234
           +        RL    L YSG+R  ++          +   I+  +  + +          
Sbjct: 207 A--EAAGDHRLLVLVLAYSGIRWGEAIAIKASRFNVDTRRIRIVQAYSDVNGKLELGPVK 264

Query: 235 ---------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN- 283
                           ++ L       +  F       +    F    F      AG+  
Sbjct: 265 NHEKRSVPVPRSFAEELRPLLDGRRRDDLVFTAPQGGPLRYRNFRQRAFDKAVVAAGLGD 324

Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIKNSRR 338
              + H +R  +A+++  AGA    +    G K+     + Y     DR+        +
Sbjct: 325 LGITPHKLRHTAASLAIAAGADVKVVQTMLGHKSAAMTLDVYGHLWPDRLDEVADALDK 383


>gi|324008511|gb|EGB77730.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 57-2]
          Length = 416

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPPDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAYMLQQWADMIDSWIDGEH 398


>gi|168750228|ref|ZP_02775250.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|168757272|ref|ZP_02782279.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|168770042|ref|ZP_02795049.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|168776115|ref|ZP_02801122.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|168783005|ref|ZP_02808012.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|168800317|ref|ZP_02825324.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|195938647|ref|ZP_03084029.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208805712|ref|ZP_03248049.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208812430|ref|ZP_03253759.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208821448|ref|ZP_03261768.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209397064|ref|YP_002268871.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254791404|ref|YP_003076241.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. TW14359]
 gi|187768459|gb|EDU32303.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188015555|gb|EDU53677.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|188999618|gb|EDU68604.1| integrase [Escherichia coli O157:H7 str. EC4076]
 gi|189355744|gb|EDU74163.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361030|gb|EDU79449.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|189377332|gb|EDU95748.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208725513|gb|EDZ75114.1| integrase [Escherichia coli O157:H7 str. EC4206]
 gi|208733707|gb|EDZ82394.1| integrase [Escherichia coli O157:H7 str. EC4045]
 gi|208741571|gb|EDZ89253.1| integrase [Escherichia coli O157:H7 str. EC4042]
 gi|209158464|gb|ACI35897.1| integrase [Escherichia coli O157:H7 str. EC4115]
 gi|254590804|gb|ACT70165.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. TW14359]
 gi|326342464|gb|EGD66244.1| Phage integrase [Escherichia coli O157:H7 str. 1125]
          Length = 324

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 26/237 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + IR     + Q+    
Sbjct: 76  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDE 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 135 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 192

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKAKATKAGVN-KSAHG 288
            ++L         +     +                    +  +KA   +AG++    H 
Sbjct: 193 CRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHD 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +R   A+    AG     L    GW++++    Y        L   +    +  +DS
Sbjct: 253 LRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPNHLTEHARQIDS 303


>gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           + C+         + +    +           +    +  +   T +  +       +  
Sbjct: 38  IECTRRLHEQDLAVGHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHH 97

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +      K     AG+ K  S H +R   AT   ++G     +    G K V     
Sbjct: 98  IGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMI 157

Query: 322 YTKGA 326
           YT   
Sbjct: 158 YTHVL 162


>gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium]
          Length = 164

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 3/126 (2%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           +  +   +    +L  +  S+         +      +M +   + +    +     +  
Sbjct: 39  IEQARLIQQDDNYLDKHRPSLPFALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHH 98

Query: 264 MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++ +      KA   KAG+     + H  R   AT    AG     +    G   V   +
Sbjct: 99  LHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQ 158

Query: 321 TYTKGA 326
            YT   
Sbjct: 159 IYTHVL 164


>gi|15801304|ref|NP_287321.1| putative integrase of prophage CP-933C [Escherichia coli O157:H7
           EDL933]
 gi|12514755|gb|AAG55933.1|AE005327_3 putative integrase of prophage CP-933C [Escherichia coli O157:H7
           str. EDL933]
 gi|281600542|gb|ADA73526.1| putative integrase [Shigella flexneri 2002017]
          Length = 416

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 100/342 (29%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 52  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 110

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 111 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 169

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 170 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 229

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 230 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 289

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 290 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 349

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 350 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 391


>gi|194431989|ref|ZP_03064279.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
 gi|194419897|gb|EDX35976.1| site-specific recombinase, phage integrase family [Shigella
           dysenteriae 1012]
 gi|284921524|emb|CBG34596.1| prophage integrase [Escherichia coli 042]
 gi|315618786|gb|EFU99369.1| phage integrase family protein [Escherichia coli 3431]
 gi|320174192|gb|EFW49357.1| Phage Integrase [Shigella dysenteriae CDC 74-1112]
 gi|332097806|gb|EGJ02779.1| phage integrase family protein [Shigella dysenteriae 155-74]
          Length = 405

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 101/347 (29%), Gaps = 32/347 (9%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---- 66
            GK+ +Y  +R G GR     RI+L    + +   A   A            +PR     
Sbjct: 36  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNY 94

Query: 67  ------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                 KP T+   ++ + +     +  V+         + +I++ G     K   +H  
Sbjct: 95  TVQEALKPVTVGDALTYWLEYYVKEN-RVDYIALKRRLNNHVIQQIGAMPLDKCELRHWL 153

Query: 121 SGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRP 173
           +  +   K TP +A   L + +   K+  R+ Y   N           ++P      +  
Sbjct: 154 ACFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSN 213

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
               ++ Q                 L+  G R  +   + +             K  +  
Sbjct: 214 KELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKT 273

Query: 234 TVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGV 289
            V +     + +            +      +       S + +    +    + S H +
Sbjct: 274 KVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDI 333

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           R+   T+  D G   H +    G +       Y      D  R  + 
Sbjct: 334 RRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 380


>gi|325849126|ref|ZP_08170618.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480371|gb|EGC83434.1| site-specific recombinase, phage integrase family [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 375

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 98/340 (28%), Gaps = 47/340 (13%)

Query: 18  HGKII-YYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            GK   ++ R        G+  R       T   A  +             +      T 
Sbjct: 19  KGKKSPWWARLPATYDSSGKEHRKTVGFFKTQKEAQNAL---------DSYTLIDDIKTF 69

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------- 124
           K +  EY+K+  + +L   ++  +E  F        + +   I    ++  +        
Sbjct: 70  KDIYIEYKKTDDFLNLTKKTKDRYEDAFLSFKPLW-NKNIMDIKALQLQKCINTKVLEGY 128

Query: 125 ---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     + ++  S  +       ++ +A R + V  N    +E      +  +   
Sbjct: 129 YATEDGKRVRKDYSKDSISRLKHVASKIYNFAERHDLVDKNRAKVLEVKGLDPKPEKTIF 188

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGT 231
             D           +        ++++G+R S+     V ++      I         G 
Sbjct: 189 FADEINKLFKSIPYNPYARHVLIMIFTGMRTSEYRNLKVDNIDFKNKMITDFGIKTNKGR 248

Query: 232 IITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAG 281
              + + +    +L                     N      +   F    F     KAG
Sbjct: 249 KRIMFIHEKIEDILLELAKESTTGYIVENITINRQNKKATHPSDQTFRKSIFNKALEKAG 308

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           + K+     R   ATI+  +G +  +LM   G +++   +
Sbjct: 309 LEKTIPKQCRYTFATIAHLSGISDMDLMDLMGHQSIMTTK 348


>gi|295084599|emb|CBK66122.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 409

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 76/301 (25%), Gaps = 37/301 (12%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             I +Y  +      A      + S   +      D  +  I    ++      +   +S
Sbjct: 111 QYIIQYMTAEKRLGNAKAYISCYNSVL-RFAGNL-DIPFTDIDVNWLKRYELYLRKRGNS 168

Query: 133 AIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
                  +  +R ++  A+    V       V+         +        +     +  
Sbjct: 169 DNTIGIRMRELRAVYNKAIEDNVVNEKYYPFVKFKISHYRKGKCKRAITKAEIHKIMNVD 228

Query: 190 SQPR-------------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                            L     L  G+   D        + NN       KT   IT +
Sbjct: 229 LMEITTYYSPLLYLTKDLFSFSYLGCGMNMIDIAYLKYSDIVNNRICFVRHKTKQPITFQ 288

Query: 237 LPDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFK---AKATKAG--- 281
           L    ++++                      +  ++    +     K       K G   
Sbjct: 289 LLPQAVQIVDKYRKPNSQLNDYVFPILDRNFHITEQQQYDRIRKVIKGMNKALKKIGAHL 348

Query: 282 ---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
              +  + +  R   AT+   +G     +  + G  ++   + Y    +  ++  +  + 
Sbjct: 349 DISIPLTTYVARHSFATVLKRSGVNIALISESLGHTSLSTTQYYLDSFENEQI-DEAMKN 407

Query: 339 I 339
           +
Sbjct: 408 L 408


>gi|312199602|ref|YP_004019663.1| integrase family protein [Frankia sp. EuI1c]
 gi|311230938|gb|ADP83793.1| integrase family protein [Frankia sp. EuI1c]
          Length = 404

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 111/384 (28%), Gaps = 67/384 (17%)

Query: 6   RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           RLP    +     G+         G+ I L    +       ++A      K      P 
Sbjct: 19  RLPSGSLRVVVFAGR-----DDVTGKPIYLKETVKR--AEDVVAARARLLAKAGAGRRPE 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124
           +   T++ L+ EY  +A    +   +R  +  Y  + I+   G    R+I T+ + +   
Sbjct: 72  RNA-TVERLVDEYLATA---DIEPTTRHMYAGYARRNIVPTIGKKTVREIRTRTLETLYA 127

Query: 125 SRKH------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
             +                     S+  Q    +   F  AVR E+V  +P  + + P+ 
Sbjct: 128 RLRVCRKLCNGKGRPGHVCEPLAVSTIRQIHAVVSGAFAAAVRWEWVDESPAENAKLPRA 187

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQH--------- 216
                 P +  D+    +   E   P   F +L  + G R  + C     +         
Sbjct: 188 HAVEPDPPSPTDVAAIVTKAWELDPPLALFLWLAVTAGARRGELCELRWNNLDLTAGTMR 247

Query: 217 ------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----------------KET 254
                 ++      K  KT    T+ L +   +LL                         
Sbjct: 248 VAQNYAVRGGNKLHKATKTHQKRTLALDEVTCQLLQEEHDRIAGALAKVDVTLADDAFVF 307

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
                  +  N    +      A  AGV  +   +R ++AT    AG          G  
Sbjct: 308 SHDPAHSKPWNPDSATHRVAEVAKAAGVKATIKSLRHYNATQLLAAGVDLRTTAGRLGHG 367

Query: 315 T--VDQAETYTKG---ADRIRLGI 333
           +        Y      ADR    I
Sbjct: 368 SGGATTLRVYAHRTTEADRRAAAI 391


>gi|311742022|ref|ZP_07715832.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
 gi|311314515|gb|EFQ84422.1| phage integrase family protein [Aeromicrobium marinum DSM 15272]
          Length = 372

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 105/371 (28%), Gaps = 45/371 (12%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           +   G     +R   G         +      +      S+        P+    T +  
Sbjct: 7   KRSDGSWRARYRDEAGHEHS--RHFDRKIDAQHWLDEISSSLLNGSYVDPKAGNITFREF 64

Query: 75  ISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131
             ++        L   ++  +  +          D   + +   HI + V++      P+
Sbjct: 65  YEDW----APRQLWVPSTTTN--ADLATRSVAFADVPLKLVRRSHIEAWVKTMSTRLAPT 118

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +       +R +F+ A+    + ++PC+ V  P+R+            +  +      S 
Sbjct: 119 TIKTRFVIVRSVFRAAIADRVIVVDPCVGVTLPRRRKAEATMQIPTMEEVGRLLAHADSN 178

Query: 192 -------PRLAFEFLLYSGLRCSDSCRAGVQHLQN---------------NIFSIKTQKT 229
                   R       ++GLR  ++    V  + +               N F  +  K 
Sbjct: 179 RASTRKGFRAYVAMCAFAGLRKGEAAGVQVGDIDHVRGLLKVSRQLQREGNTFVTRLPKY 238

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVN 283
           G+   + LP   ++ LA                     + M+       ++A    A + 
Sbjct: 239 GSERGIFLPVELVETLADHIATYLPNADPEAWLFTVGDRPMSDNDIHWRWRATRASAKLP 298

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK----GADRIRLGIKNSR 337
               H +R F A+    AG     +    G         TY+       DR R       
Sbjct: 299 HVRLHDLRHFYASGLIAAGCDVVTVQRALGHAAATTTLNTYSHLWPTAEDRTRAAASGLM 358

Query: 338 RISSVVDSDDP 348
           R +  +    P
Sbjct: 359 RQALGIAPPTP 369


>gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268]
 gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268]
          Length = 358

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 94/313 (30%), Gaps = 61/313 (19%)

Query: 88  AVNSRISFESYFDQIIRK-------------SGDFDYRKITTKHIRSGVESRKHT----- 129
           +  ++I++        +                  D  +++   +   +E  K+      
Sbjct: 40  SSRTKIAYAYDLKVFFQFLLEEKKLRSDIYDFEARDLDRLSLVDLEEYMEFLKYRTKKKT 99

Query: 130 --------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                           S  + ++S++  F +  + E +  N    +  PK   E I    
Sbjct: 100 GKEGQIEEVEVLNHNKSIKRKISSLKSFFGYLYKTEQIKENKTALLSLPKLSQEEIVRMD 159

Query: 176 KEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           + ++ QF      G                +     + +L +G+R S+        +   
Sbjct: 160 QGEVAQFLDQVESGEDLSKKEKLYHEKNQVRDLAMMQLMLGTGIRVSECVGLNCSDVDFQ 219

Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQF 269
             +I+  + G   +++   D   + L                +   F++   ++M+    
Sbjct: 220 NNAIRIHRKGGKEVSIYFSDEVEQGLRAYMEERKSKIPAAGHENALFLSLQNKRMSVRTV 279

Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326
            +  K  A K     + + H +R    T         + +    G   V+   + Y    
Sbjct: 280 ELMVKKYAQKVTPLKHITPHKLRSSYGTNLYQETGDIYLVADVLGHSDVNTTKKHYAALE 339

Query: 327 DRIRLGIKNSRRI 339
           +  R  ++N  R+
Sbjct: 340 EERRRSVRNLVRL 352


>gi|315291914|gb|EFU51266.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 153-1]
          Length = 405

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 103/346 (29%), Gaps = 30/346 (8%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKRE--YI 61
            GK+ +Y  +R G GR     RI+L    + +   A   A         G  P+ E  Y 
Sbjct: 36  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKAAREKAAQCRTWLAEGKNPRHEMNYT 95

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                KP T+   ++ + +     +  V+         + +I++ G     K   +H  +
Sbjct: 96  VQEALKPVTVGDALTYWLEYYVKEN-RVDYIALKRRLNNHVIQQIGAMPLDKCELRHWLA 154

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPW 174
             +   K TP +A   L + +   K+  R+ Y   N           ++P      +   
Sbjct: 155 CFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSNK 214

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 215 ELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKTK 274

Query: 235 VELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVR 290
           V +     + +            +      +       S + +    +    + S H +R
Sbjct: 275 VAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIR 334

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +   T+  D G   H +    G +       Y      D  R  + 
Sbjct: 335 RTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 380


>gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567]
 gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567]
          Length = 225

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 7/214 (3%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           IT K +   + +    P++    L S+ + F++ +  E    +P   +    +     R 
Sbjct: 3   ITDKQVIKWLANPNWQPATRKSALQSIHLFFRYLISTETREDDPTHLIPSIPQPRYHSRA 62

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                + Q     +   +  +        GLR S+      Q+  +   SI  +   T  
Sbjct: 63  IPSSVITQALRRTTSVEEEFMILLGAYA-GLRRSEIAALHTQNYADKWISITGKGGHTRH 121

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
                      L +  +  ++       +           K  +   G + + H +R + 
Sbjct: 122 IPAH------ALLLPYLESKSTGYYFAGRFTGHRSADNIAKKISRNLGQDYTPHQLRHWF 175

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT           +    G   +   + Y    D
Sbjct: 176 ATTVYAESHNLRAVQELLGHADISTTQRYIGVLD 209


>gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 304

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------K 127
           ++EY         + N+ IS+ +  +             +T   IR  ++          
Sbjct: 2   LNEYVVYLQEKGASQNTIISYTNDLNMFFHDLHIHPDDYVTPADIRKWIQHMLNPAEGKP 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKS 184
              S+  + L S+R  + WAV + Y+  NP   +   +      E I   T+E+ +    
Sbjct: 62  LAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDYEKIMWLTEEEFEDLLQ 121

Query: 185 FWSEGS-------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-G 230
              +               + R     L Y+GLR  +     +  L   +  I+      
Sbjct: 122 RMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
            + TV + +  +  L      +           ++   F      K +  G+        
Sbjct: 182 KVRTVPISNILLAELEDWLKFRAEMAKKKPHVAVSPYVFYSQRSPKFSVRGIQRMIESYS 241

Query: 283 ----NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                 + H  R         A      ++    G   +     Y K +   +   ++  
Sbjct: 242 LPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKDSYSDLADAVEAL 301

Query: 337 RRI 339
            + 
Sbjct: 302 PKF 304


>gi|188024914|ref|ZP_02997294.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|291282147|ref|YP_003498965.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
 gi|188016017|gb|EDU54139.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4113]
 gi|290762020|gb|ADD55981.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O55:H7 str. CB9615]
          Length = 416

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 52  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 110

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 111 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 169

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 170 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 229

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 230 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 289

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +       S + +    +    + S H +R+   
Sbjct: 290 RPIPEAILPFITQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 349

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 350 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 391


>gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           + C+         + +    +           +    +  +   T +  +       +  
Sbjct: 38  IECTRRLHEQDLAVGHGRVWLPYALAEKYPNADRSFEWQYVFPATKLSVDPRSGAVRRHH 97

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +  +      K     AG+ K  S H +R   AT   ++G     +    G K V     
Sbjct: 98  IGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMI 157

Query: 322 YTKGA 326
           YT   
Sbjct: 158 YTHVL 162


>gi|301022356|ref|ZP_07186247.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
 gi|299881293|gb|EFI89504.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 196-1]
          Length = 418

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/384 (12%), Positives = 115/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q   S+  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQARESISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQGFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAYMLQQWADMIDSWIDGEH 398


>gi|208808586|ref|ZP_03250923.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208728387|gb|EDZ77988.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4206]
          Length = 415

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 51  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 109

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 110 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 168

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 169 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 228

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 229 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 288

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +       S + +    +    + S H +R+   
Sbjct: 289 RPIPEAILPFITQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 348

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 349 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 390


>gi|168782447|ref|ZP_02807454.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|168800479|ref|ZP_02825486.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|189403525|ref|ZP_03007120.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|195940272|ref|ZP_03085654.1| putative integrase [Escherichia coli O157:H7 str. EC4024]
 gi|208816382|ref|ZP_03257561.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822085|ref|ZP_03262404.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397964|ref|YP_002270030.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254792570|ref|YP_003077407.1| putative integrase of prophage CP-933C [Escherichia coli O157:H7
           str. TW14359]
 gi|189000002|gb|EDU68988.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4076]
 gi|189360115|gb|EDU78534.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4486]
 gi|189377301|gb|EDU95717.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC508]
 gi|208733030|gb|EDZ81718.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737570|gb|EDZ85253.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159364|gb|ACI36797.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4115]
 gi|254591970|gb|ACT71331.1| putative integrase of prophage CP-933C [Escherichia coli O157:H7
           str. TW14359]
 gi|320187839|gb|EFW62509.1| Phage Integrase [Escherichia coli O157:H7 str. EC1212]
 gi|320637579|gb|EFX07379.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320643139|gb|EFX12340.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320653911|gb|EFX21985.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320664527|gb|EFX31678.1| Site-specific recombinase, phage integrase family protein
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326341486|gb|EGD65277.1| Phage Integrase [Escherichia coli O157:H7 str. 1125]
          Length = 409

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 45  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 103

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 104 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 162

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 163 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 222

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 223 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 282

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +       S + +    +    + S H +R+   
Sbjct: 283 RPIPEAILPFITQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 342

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 343 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 384


>gi|150396831|ref|YP_001327298.1| phage integrase family protein [Sinorhizobium medicae WSM419]
 gi|150028346|gb|ABR60463.1| phage integrase family protein [Sinorhizobium medicae WSM419]
          Length = 361

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/345 (9%), Positives = 90/345 (26%), Gaps = 32/345 (9%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           +T+ ++++GK  Y  +    R            E   +         +  +        K
Sbjct: 4   ITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAIDRLK 63

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE 124
           + +TL   I  Y K +           +      +I  +    +   ++I +  I     
Sbjct: 64  ENSTLAHAIDRYIKES-----KKKIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFAT 118

Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----------SVERPKRKTEGI 171
              H   P +   +++ +  +F  A     + ++               +     + +  
Sbjct: 119 ELSHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQVVLKRLGLIAKSTQRDRR 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
               +           E           L +    S   +  +  +  + +  + ++   
Sbjct: 179 PTLEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLV 238

Query: 232 IITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283
                  +     +      +              +     A   S  F    +  G+ +
Sbjct: 239 RDMKNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIED 298

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
              H +R    +   + G     +    G ++ +  + Y+    R
Sbjct: 299 LHFHDLRHEGVSRLFELGWNIPHVATVSGHRSWNSLKRYSHIKQR 343


>gi|194466442|ref|ZP_03072429.1| integrase family protein [Lactobacillus reuteri 100-23]
 gi|194453478|gb|EDX42375.1| integrase family protein [Lactobacillus reuteri 100-23]
          Length = 328

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 111/326 (34%), Gaps = 45/326 (13%)

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
           +   +K+         E+ ++  +G +   +   +     QI + + D    KIT   I+
Sbjct: 2   VQVGKKRAIKFWKYYKEWYETYKYGDVRDVTYQRYILTGKQIKKLAPDLMLDKITRADIQ 61

Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWT 175
             + +   T    +   F   +    + AV + +++ +PC  +    + K+K +  +   
Sbjct: 62  KLINAYGQTHEKVTVRNFYRLLEAPIRDAVYEGWISRDPCYKIRITSQVKKKKKLKKWLE 121

Query: 176 KEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIF------------ 222
            +++ + +  ++         F+F L +GLR ++        +  N              
Sbjct: 122 MDEVHKLEQVFNADQSGYGDFFDFTLRTGLRFAEVLGLTPADVDMNNMSIYVNKTLNYKK 181

Query: 223 ----------SIKTQKTGTIITVELPDGFM-------------KLLAMTPIGKETFFINN 259
                      + T+   ++  + +    +             + +       ++     
Sbjct: 182 IDYSQVKPGDFMPTKNKYSVRQILIDFKALTDLQRHLDGVKEDESIWAHWYASDSRTNTR 241

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
               +  + F+   K    +AGV   S HG+R   A++      +   +    G    + 
Sbjct: 242 GGNHIYNSVFNKELKEMCDQAGVPPISVHGLRHTHASLLIANRVSIQSVAKRLGHGNTET 301

Query: 319 AET-YTKGADRIRLGIKNSRRISSVV 343
            +  Y    D  +L  +++ +I SV+
Sbjct: 302 TQRVYIHLLD--KLANEDNNKIMSVM 325


>gi|299133063|ref|ZP_07026258.1| integrase family protein [Afipia sp. 1NLS2]
 gi|298593200|gb|EFI53400.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 451

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 98/386 (25%), Gaps = 47/386 (12%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60
           P         GK  Y   Y   G  RR  +      T   A   A               
Sbjct: 27  PGFGLRVFASGKRSYVLQYRALGRSRRYTIGLHGVWTAESARQEAKVQLGRVAQGDNPAE 86

Query: 61  INSPRKKPTTLKWLISEYRKSAHW--------GSLAVNSR-ISFESYFDQIIRKSGDFDY 111
                 K  T+K L + Y    +               +           II   G    
Sbjct: 87  ERQLDHKAITVKELCTLYVNDLNAGLILGKGGRPKKPTTIVTDTGRIERHIIPLLGTRRV 146

Query: 112 RKITTKHIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQE 151
           + +T   I   ++                      +    +A + +  +  +  +AV   
Sbjct: 147 KDLTKADINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTVGLLGGILTYAVEAG 206

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLLYSGLRC 206
            +AINP   + +PK      R    E     +   +   + + A        +  +G R 
Sbjct: 207 IIAINPAHGLRKPKDNVRTRRLTEAEYRTLGEMLRTAEKEEKYATTVEIIRQIALTGCRR 266

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           S+           +   ++   +     +          L A       ++         
Sbjct: 267 SEMIGLMWTEADTDRSCLRLVDSKEGTSVRPIGLPVVEFLEARRETASGSYVFPGYGDDN 326

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               F   ++     + + + + H +R   A+I  D G T   + A  G         Y 
Sbjct: 327 AFGSFPNHWEQVFKGSPLSDVTPHVLRHSFASIGNDLGFTEVTIAALVGHAKGSVTSKYI 386

Query: 324 KGADRIR-LGIKNSR-RISSVVDSDD 347
              D    +        I  ++D  +
Sbjct: 387 HTLDTALIMAADTIAGYIEGLLDGKE 412


>gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 82/335 (24%), Gaps = 79/335 (23%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---------------------- 112
           I  Y    H   LA N+  ++        +                              
Sbjct: 31  IQRYLNYCHKRQLASNTVNTYACRLLDFWQWLEYKSLNWQEVGLNELADFVNWYLLGGEV 90

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK------- 165
           ++ T+ +R  +  R  +P +    +T+++  +++   +  V     + +           
Sbjct: 91  EVITEDVREIMSKR--SPRTVNLAITAVQGFYEFHTVEGRVNEKHFMKLAHGWGKRGGFL 148

Query: 166 -----------------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                                     T E++ Q         + RL    L  +G+R  +
Sbjct: 149 RGIVKSSPSKRKRIKVKEPKIFPGCLTDEEVTQLADACY-SYRDRLIVMLLRETGVRRGE 207

Query: 209 SCRAGVQHLQNNIFSI--------------------KTQKTGTIITVELPDGFMKLLAMT 248
                +  + +                         +                  LL   
Sbjct: 208 LLGLHLVDVADFDSRGRIRIIRRDNNPNGATAKGTEREIPIIHNRDAVKETFHAYLLEEY 267

Query: 249 PIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           P   E                 + M++ + +  F     +  +    H  R   AT    
Sbjct: 268 PPEAEKLEHGMLFVNLEGEYIGKPMSSARLNSLFYQLEKRTSIKAHPHLFRHTFATRMLQ 327

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333
           AG     +    G K++   +  Y+   D + LG 
Sbjct: 328 AGYLDQYVQQLLGHKSIGTTKDIYSHVLDEMDLGA 362


>gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus]
          Length = 361

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/322 (9%), Positives = 80/322 (24%), Gaps = 67/322 (20%)

Query: 73  WLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
            LI    ++ K       + N+  ++  +   +             I  + +   V   +
Sbjct: 24  QLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLR 83

Query: 128 H----------------TPSSAIQFLTSMRVLFKWAVR---------------------- 149
           +                  ++    L ++     +  R                      
Sbjct: 84  YPTANNVIDLQSKEAIREETTVNTILNAVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFL 143

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                     +V + + K + IR  T E+++Q         + +L    +   GLR  + 
Sbjct: 144 HHVNKGRYQKNVLKLRVKKKQIRTLTAEEVKQIIDACHT-KRDKLILMLMYEGGLRIGEV 202

Query: 210 CRAGVQHLQNNIFS--------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258
               ++ +                 +    +          +L+++        +     
Sbjct: 203 LSLRLEDIATWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLVYEYSEELE 262

Query: 259 -----------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
                         + +         +    + G+  ++H +R   AT     G     +
Sbjct: 263 HDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFV 322

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   V     TY   +D+
Sbjct: 323 QKRLGHAHVQTTLNTYVHLSDQ 344


>gi|168494863|ref|ZP_02719006.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|168494873|ref|ZP_02719016.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|168494926|ref|ZP_02719069.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|168495025|ref|ZP_02719168.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|183575134|gb|EDT95662.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|183575200|gb|EDT95728.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|183575258|gb|EDT95786.1| integrase [Streptococcus pneumoniae CDC3059-06]
 gi|183575264|gb|EDT95792.1| integrase [Streptococcus pneumoniae CDC3059-06]
          Length = 382

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 98/375 (26%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIFYYETAKGK-RYYVRRSFFFRGKKREKSKSGLTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKAKFGSTLLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G   V 
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus
           faecalis V583]
 gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis]
 gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis V583]
 gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus
           faecalis HH22]
 gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus
           faecalis TX1322]
 gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8]
 gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis R712]
 gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis S613]
 gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TUSoD Ef11]
 gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0860]
 gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0855]
 gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4248]
 gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 512]
 gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0102]
 gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis DAPTO 516]
 gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2137]
 gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX4000]
 gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1341]
 gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309B]
 gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0309A]
 gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1467]
          Length = 389

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 108/372 (29%), Gaps = 51/372 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GKI     K    + +            ++  L           +P      
Sbjct: 17  IVSYKDSNGKIR-QKWKDTKLKKKGNKKRAEKIRDEFLLELESQLAMECECANP---DLL 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESR- 126
               +  Y + +    +A N+ + ++ Y  ++I +          ++   H++   +   
Sbjct: 73  FYDYLLNYLEVSK-KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYML 131

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T ++ I +   +R   + AV  E ++ N    V +PK+K    + + + ++ +   
Sbjct: 132 NDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLD 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             SE  +  L      + GLR S+        +      I                    
Sbjct: 192 ILSEE-KLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKD 250

Query: 233 --------ITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNATQ 268
                    T+ L +   + L      ++                  F   D + M    
Sbjct: 251 QTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQY 310

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
            +        K G+ K   H +R  +A+I  D+G     +    G  +       YT   
Sbjct: 311 VTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLT 370

Query: 326 ADRIRLGIKNSR 337
           A       +   
Sbjct: 371 AGVKERAAEALE 382


>gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262]
 gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262]
          Length = 309

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 83/291 (28%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + ++K  T      E+      G++   +   +     +I     D   + +     + 
Sbjct: 2   KARKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPDLKIKDLDRYTYQQ 61

Query: 122 GVESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWT 175
            + S   T            ++     AV +  ++ NP   +    + P+ K        
Sbjct: 62  LLNSYAVTHEKQTTMDFHHHLKGAILDAVDEGVISQNPTRKIVIKGKTPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           +      +    E          ++ +GLR S++          +   I   KT      
Sbjct: 122 EVQALLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMV 181

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                      +   +++        +     K+       K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDPDKPIFVKSRVFNSTINNRLKVLCEN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)]
          Length = 293

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   + +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCNTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           AT   + GA    +    G   V   + YT   D
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLD 284


>gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+    + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPVTPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
 gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83]
          Length = 367

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 90/280 (32%), Gaps = 21/280 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------ 126
             ++ + K           RI ++ +++ +    G   +  IT +  +   E        
Sbjct: 95  DFLAYFLKMCRKKDQK--WRIVYQHFYNYVQ---GHCTFGDITIELCQGFREYLLNAKQL 149

Query: 127 ----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               K + +SA  + ++ R L K A R +++  N    +++ + K       T ++++  
Sbjct: 150 KRKGKVSTNSASGYYSTFRGLLKIAYRDKWLRENINDFLDKIEAKEVKKEYLTLDEVKIL 209

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                E    + A  F   +GLR SD      +            +          +  +
Sbjct: 210 AQTPCEHDVLKRASLFSCLTGLRISDILNLRWEDFTLAPDQGYCIRI--RTQKTSTEATL 267

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +                 + +  +  +   K    +AG+  + + H  R   A I    
Sbjct: 268 PISYEAYELCGEPSSGKVFKGLQRSMINYPLKKWIKQAGIMKHITFHCFRHSYAVIQISL 327

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           G   + +      K V   + Y    +  +   + + +IS
Sbjct: 328 GTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETAEKIS 365


>gi|323171191|gb|EFZ56839.1| phage integrase family protein [Escherichia coli LT-68]
          Length = 365

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKSVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPQKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 333

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 41/301 (13%)

Query: 87  LAVNSRISFESYFDQIIRKS--GDFDYR---------KITTKHIRSGV----ESRKHTPS 131
            +  +   +  Y    +     G+   R          +  + +   +    E RK   +
Sbjct: 32  RSQKTLKDYMFYLKDFLNFVYEGEEGIRAEELIELMKDVEKQDVEDYIAYLVEDRKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S  + ++S++ L+K   +  Y      + + +  R  + +   + ED+++    +     
Sbjct: 92  SINKIISSLKSLYKEMEKNGYENPFKYVELFKVSRNIDNVLKLSFEDIKKIIGQYQINGE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246
              +       L Y+G+R  +      +H+     +   +   T    E       +L  
Sbjct: 152 KDYRNVNILYTLFYTGMRSQELINLKFKHILEREGNYYIKLEETKSGREQYKSVHDILIK 211

Query: 247 ------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                                             +++        +      G + S H 
Sbjct: 212 KLKEYKEYLQSLYNIDDSDIEDHYVFSSSTEKNTQLSYRALYDLVQNMGKLIGKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGIKNSRRISSVVDSD 346
           VR   AT  +  GA   E+    G       E Y   K     R+ ++     SS+ D D
Sbjct: 272 VRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRV-LEKLPVFSSLEDID 330

Query: 347 D 347
           +
Sbjct: 331 E 331


>gi|256811516|ref|YP_003128885.1| integrase family protein [Methanocaldococcus fervens AG86]
 gi|256794716|gb|ACV25385.1| integrase family protein [Methanocaldococcus fervens AG86]
          Length = 330

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 99/331 (29%), Gaps = 34/331 (10%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYF 99
           +         +    +      ++   +K  +  + +   +  +  ++  S       + 
Sbjct: 1   MREKELKQLENLLLLKVKKEKIEETDKIKEYLKRFEEERRFDGIKESTIKSDLDRLRVFL 60

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
           D  I   G     ++ T             RK + SS  ++   ++V ++     + +  
Sbjct: 61  DYCINYLGKNP-EELKTGDFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYDVIQE 119

Query: 156 NPCLSVERPKRKTEGIRP--------WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
               S ER +     I+               +  +S      +  L    L  +G R S
Sbjct: 120 FVEESKERKRFARIEIQHYDAVDAEMLNMILRKIIESGSRTRIRDALIIRLLWDTGCRVS 179

Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
           +        +   N IF I+  KT    TV      ++LL            ++   + +
Sbjct: 180 EILNLKYGDVDLDNGIFKIRNTKTHEERTVVCSSDTLELLRDYVQFNVRQGSDDYLFQNS 239

Query: 266 ------ATQFSIWFKAKATKAG----VNKS----AHGVRKFSATISADAGATAHELMATY 311
                     S  F+    +      + K+     H +R   A    + G     +    
Sbjct: 240 QGKKVRKEWISEVFRRAVNELKEEGKIPKNKRIVIHSIRHGRAVDLLNKGVPIDIVKEYL 299

Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
           G ++++    Y    +R    ++  +++  +
Sbjct: 300 GHRSMNTTLIYAHSKERAE-SLEFIKKLLRI 329


>gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of
           Discodermia dissoluta]
          Length = 339

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 39/317 (12%)

Query: 64  PRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKS--------GDFDYRK 113
           P   P +L   +  +           + ++ +++   F  ++R             D+  
Sbjct: 2   PEAGPNSLGRALQAFFGQHLPLVRGASRHTVLAYRDGFKLLLRFLEQHLQRPSAALDFPD 61

Query: 114 ITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           +   ++ + ++     R +T ++    LT++    ++A  +    +  C  +     K  
Sbjct: 62  LEPDNLLAFLDHAETQRGNTIATRNARLTAVHSFARYAATRHPEHLALCQRILAIPFKRG 121

Query: 170 GIRPWTKEDMQQ-------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             R     +  +              G + R     +  +G R  +        LQ    
Sbjct: 122 PERSIEYLEADEAQALLAAPDCGTPSGRRDRALLLAMYNTGARVQEILDLRPCDLQLERP 181

Query: 223 SIK--TQKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWF 273
                  K        L       L        +    ++  F N     ++ +      
Sbjct: 182 FQALLRGKGRKERICPLMKETAVALRALLAERGVPLDSEQPLFRNRHGAPLHRSGVRYIL 241

Query: 274 KAKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                +A  +           H +R   A+    AG     +    G  +V+ A  Y   
Sbjct: 242 HKHCCQAATHAPTLKRKRIHPHVMRHTMASHHLQAGVDIVTISHLLGHASVETANRYAVV 301

Query: 326 -ADRIRLGIKNSRRISS 341
             +  R  +  +  +  
Sbjct: 302 NLETKRAAVAKAGTLGE 318


>gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
 gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF]
          Length = 321

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 77/279 (27%), Gaps = 22/279 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--------I 114
                  T++    E+ +     +L+  +   ++   D                     I
Sbjct: 7   QKNNSTKTIQEGFKEFYRFCRVKNLSEPTLTYYQETLDTFQNFY---PLSNQISTINKTI 63

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGI 171
           T  ++     +      S    +  +R +  + +  EY+        ++ ++ K      
Sbjct: 64  TDDYVLFLKNNSNMNDISINTKIKGLRTILYYFMELEYMDNFKIKLMMAQKKIKETYTDA 123

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                      K       +      +LL +G R        ++ +      IK  KT  
Sbjct: 124 ELKLLLKKPNLKQCGFAEYRDWTIVNYLLGTGNRVDTIVNVRIKDIDFESGYIKLDKTKN 183

Query: 232 IITVELPDGFM------KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG-VN 283
                +P   +      + L      KE + F++    K+N        K    + G + 
Sbjct: 184 KRQQLIPLSNVLAKVLTEYLQYRDGEKEDYLFVSVYGAKLNGNSLGHSIKKYNQRRGVLK 243

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            S H  R   A      G     L    G  T+D    Y
Sbjct: 244 TSVHLFRHTFAKKWILNGGDIFRLQKILGHSTLDIVREY 282


>gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium]
          Length = 171

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 5/127 (3%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           +       G   +       +  K+               L+M P        +    + 
Sbjct: 45  QHEQDLEEGFGSVYLPEALARKYKSAEREWCWQYVFPSTRLSMDPREVHRQDADTTTLRR 104

Query: 265 NATQ---FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +        +  K     +G+    S H  R   AT   + G     +    G K V   
Sbjct: 105 HHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTT 164

Query: 320 ETYTKGA 326
             YT   
Sbjct: 165 MIYTHVL 171


>gi|324014846|gb|EGB84065.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 60-1]
          Length = 365

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPQKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676]
 gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676]
          Length = 360

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 92/329 (27%), Gaps = 57/329 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           LI ++ +          +        D+ I+        +I+ + +     S        
Sbjct: 29  LIEDWERQQVVKGFTKETVALNLRNIDEFIK-FNKKYVWEISAEDVEKFYYSLVGKGLSH 87

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK---------EDMQQ 181
           S+  ++ +++   + +   ++ + +   + V  P+   E  + + +            ++
Sbjct: 88  STRRKYQSNISTFYSFLKSRKSLELYNSIGVLVPEVIDEFNKFFHRKDDDDVRVIPPKKE 147

Query: 182 FKSFWSEGSQPRLAFEFLLYS--------------GLRCSDSCRAGVQH----------L 217
               +    + R+      Y+              GLR ++     +            +
Sbjct: 148 ILDMFFNELKSRILTSRKYYTVARDYVFFKTLSLSGLRINELVMLDINDLRFDLGHNGKI 207

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----------KMNAT 267
                            V +  G  KLL            NN             ++   
Sbjct: 208 HVRYGKGSRGTGHKPRWVPMLSGLDKLLEWYLEEILPGLKNNQVNAALFLSEAGERVGRD 267

Query: 268 QFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   +  + G+ KS    AH +R   AT   + G     +    G   V     Y 
Sbjct: 268 TMRSNLIRRQKEIGIPKSEQFSAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGYL 327

Query: 324 K-----GADRIRLGIKNSR-RISSVVDSD 346
           +       +RIRL     + ++  V+  +
Sbjct: 328 EPSSNFIENRIRLAQNKWKSQLEEVLREE 356


>gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++    S   +  + K G+    ++H +R   AT   + G     +    G K V   
Sbjct: 97  HHLHEKNISRAIRNASRKIGLFKRVTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865]
 gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865]
          Length = 298

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        +    +AG+ KSA  H +R   AT   + G     +    G K V   
Sbjct: 211 HHVSEEVLQRAVQVARRRAGIAKSATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATT 270

Query: 320 ETYTKGA 326
           + YT   
Sbjct: 271 QIYTHVL 277


>gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973]
 gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973]
          Length = 306

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 82/290 (28%), Gaps = 29/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPS 131
           K     S A  +  +       +     D     I    I        R  ++ R    +
Sbjct: 8   KECVGKSRAEGTYQNLLYSDKLLTEFVKDKGMTDIVIATIPEDLFEEYRFYLKKRGLATA 67

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEG 189
           +  ++L  +  L   AV Q  +  NP  + +  K + +    +      +   +    E 
Sbjct: 68  TMNRYLCWLSRLMYRAVSQRLIRCNPFENAKYEKAEQKIRFLQKSDVAKLMALRVIDKEA 127

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLL 245
            Q R  F F  ++GL  +D       H+Q       +  K ++   +  +       + +
Sbjct: 128 EQARRMFIFSCFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAI 187

Query: 246 AMTPIGKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
                 +                       + +  S          G+ +    H  R  
Sbjct: 188 INQCKDERPSTKEMQTVKEKGDDFIFHCACSRSVMSAKLSIVGKACGIRERLSYHMARHT 247

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             T+S  AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 248 FGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDRLIRK 295


>gi|66396277|ref|YP_240638.1| ORF010 [Staphylococcus phage 52A]
 gi|62636693|gb|AAX91804.1| ORF010 [Staphylococcus phage 52A]
 gi|116235514|gb|ABJ88849.1| integrase [Staphylococcus phage 80]
          Length = 401

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/398 (11%), Positives = 115/398 (28%), Gaps = 69/398 (17%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K + ++   K  YY +         +R+   L    + +   A          K    +S
Sbjct: 5   KFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEDKIKEKLNNQSS 64

Query: 64  PRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              K  T   L+ E+ +         V +  + ++    I + S  +    KI TK++++
Sbjct: 65  SILKTLTFHTLLDEWFEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQT 124

Query: 122 GVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP-------- 164
            +      ++ +   + L  M+         + +       ++      +          
Sbjct: 125 FINELSNIYSENQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEA 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNN 220
           K           +      +  +   + R+    A E    +G+R  +     V+ +   
Sbjct: 185 KMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLK 244

Query: 221 IFSIKTQKTGTIITVELPDGFMK------------------------LLAMTPIGKE--- 253
             +I    T   I      G                           +L    + +    
Sbjct: 245 NKTIDINGTIHRIKCNAGFGHKDTTKTAGSKRKIAINSRIANVLKKIMLENKKMQQWEPS 304

Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  F       M  ++ +    + A    +NK  + H +R    ++ A+   +   
Sbjct: 305 YVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKA 364

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +M   G        + YT   +  ++  +  +++  +V
Sbjct: 365 IMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 30/146 (20%), Gaps = 7/146 (4%)

Query: 188 EGSQPRLAFEFLLYSG-----LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +G   R+       +      L+                  +                + 
Sbjct: 18  KGMHDRVTMLPDALTAPLEVHLQLVRRMFDEDVEHGYGQVYLPFALERKYQNANREWAWQ 77

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
            +     +  +       +   +        K     AG+    S H  R   AT   + 
Sbjct: 78  YVFPSDRLSTDPHDGQIRRHHRDERGLQSAVKVAVRAAGIAKPASCHTFRHSFATHLLEN 137

Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326
           G     +    G   V     YT   
Sbjct: 138 GYDIRTVQELLGHANVKTTMIYTHVL 163


>gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter
           hominis ATCC BAA-381]
 gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter
           hominis ATCC BAA-381]
          Length = 352

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +  LA + ++Y+G+R  ++     + +         +  G      +      L+     
Sbjct: 190 RNMLAVKIIIYTGIRVGEAINLKFKDISEENGIYILRIRGKGNKYRVVMIKKHLIEKHIE 249

Query: 251 GKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                ++N D           +     S   +     AG+ K    AH +R   AT+   
Sbjct: 250 ALSINYLNEDGYLLVNAKGKPLTQAYISRIVEKILISAGIRKEKNGAHMLRHTFATMLYK 309

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISS 341
                  +    G  ++D +  YT    +  RL  K +   + 
Sbjct: 310 KQKDLVLVQEALGHASLDTSRIYTHFDSQKLRLAAKVAEDFAE 352


>gi|227355886|ref|ZP_03840278.1| integrase family protein [Proteus mirabilis ATCC 29906]
 gi|227163874|gb|EEI48776.1| integrase family protein [Proteus mirabilis ATCC 29906]
          Length = 398

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 127/384 (33%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYPH-----------ESTFIPAYMSAL 51
            +     +    T+ G I + +    +GRR  + +              +  I A     
Sbjct: 18  KVSDRDGLYVAVTKSGVISFRYDYRFNGRRETVTFGRYSADGITLAEARAELIEAKRLLN 77

Query: 52  TGSTPKREYINSPRKKP-TT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
            G +P  +  +    K   T  K     + + A +   A ++R   E+  ++ I    G 
Sbjct: 78  AGISPASKKRDGIESKKIGTVFKDYTVNFLRDAQY---ADSTRAMKEAIIEKEIYPVFGK 134

Query: 109 FDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R+  E  K   +  +A+Q    +  +F +A+ + Y   NP  +++    
Sbjct: 135 LQLEEITTPRLRALCEKIKDRGAKATALQVREIIGSVFTYAIDRGYEITNPADAIKASSI 194

Query: 167 KTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
            T   R             +    +S     +LA +F+L + +R S+   A    +    
Sbjct: 195 GTFQARERAMSPKEIGILFRELENYSCYPTLKLAVKFVLLTLVRKSEFIHATWDEIDFKN 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIW 272
                     K      + L D  M +L    +             + K+ ++    +  
Sbjct: 255 RQWVIPKGRMKGRKEHVIYLSDQAMDILTGMKVCAMGSNYLMPGRYDIKKPLSNAALNNV 314

Query: 273 FK---AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                 +  + G+     + H +R+ ++T+  +AG  +  +              Y K  
Sbjct: 315 IDGTVKRINEKGIEFEPVTVHDLRRTASTLLHEAGYNSDWIEKCLAHVQNGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R ++  + +  +   +   D
Sbjct: 375 YAEQRRKMLQEWADMVDEWIKEKD 398


>gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
            G+  +        +       +  +  T      +A    AG+ K+   H +R   AT 
Sbjct: 74  WGWQYIFPAQKRSFDPRTGREQRHHIAETALQKAVRAAIRAAGITKTGSCHSLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G   V     YT   
Sbjct: 134 LLEAGYDIRTIQELMGHADVSTTMIYTHVL 163


>gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)]
          Length = 290

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V   + YT   DR
Sbjct: 251 ATNLLEVGADIRTVHELLGHTDVKTTQIYTHVLDR 285


>gi|295099169|emb|CBK88258.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87]
          Length = 410

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/390 (12%), Positives = 101/390 (25%), Gaps = 73/390 (18%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
           M    +  P    +   +G   Y        G+R+ L            M+AL       
Sbjct: 1   MAAKRKRIPR-YSKVQINGHEYYKTDIEDADGKRVILYGKTREEVYDKEMAALEQIDN-- 57

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
               + R+K  T+     ++        +   + I + S     II++ G+     +T  
Sbjct: 58  ---ATFRRKSPTVAEYCEKWLLMQSVH-IRATTLIDYTSKVRRHIIKELGEKRMADVTLD 113

Query: 118 HIRSGVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPW 174
            I+  +       +S  + +  + + +F+ A     +       L  +      E  +  
Sbjct: 114 DIQVALVPVSKKSASVYKSVVILYKSIFRAAKESHVIDTNPTIYLEAKGGGVPQEERQAL 173

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T E +++       G  P +     LY+GLR  +        +  +  +          T
Sbjct: 174 TDEQVERLLDA-IRGLPPYVFVMIGLYAGLRREEILALQWDSVYLDTDAPYLTVRRAWHT 232

Query: 235 VELPDGFMKLLAMTPIGKE---------------------TFFINNDKQKMNATQFSIWF 273
                  +  L      +                          N D + ++ TQF   +
Sbjct: 233 EHNRPVILTELKTKAAERNIPLPDRLAECLKAAKKKSTSDYVIANQDGEPLSYTQFKRLW 292

Query: 274 KAKATK-------------------------------------AGVNKSAHGVRKFSATI 296
           +   T+                                          + H +R    T 
Sbjct: 293 QYIVTRTAKPRIARKLVDGKYVKYMLYPKLGEKARNNGHVVYSLDFEVTPHMLRHTYITN 352

Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTKG 325
              A      +    G ++       Y K 
Sbjct: 353 LIHASVDPKTVQYLAGHESSKITMDIYAKV 382


>gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA]
          Length = 390

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 72/272 (26%), Gaps = 21/272 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKH 128
              +  +        +  ++R ++    D + + +    +  I    +      + S   
Sbjct: 86  AAFVDFFSDVCMDTGIRESTRKNYFRTLDTLEKYAPVAAFCDIDKTFVCGYERFLCSMGM 145

Query: 129 TPSSAIQFLTSMRVLFKWAV----------RQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             ++ ++ +  ++   + A               +         R    T+ +    +  
Sbjct: 146 KANTIVKHMKHLKKALRQACLKGYSKHSIEELFSLCSVKPEKTFRESLTTKELVVLYQFL 205

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
              F +   +  +    F F   +GLR SD C     +++          T    + ++ 
Sbjct: 206 ENNFDTMEEKEREILSGFLFSCLTGLRYSDICSVEYSNIKRIRNKRWLFLTMKKTSQKVF 265

Query: 239 DGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291
               ++       +            +     +        +K        N S H  R 
Sbjct: 266 IPIEQMFSGKALGIMRLFHRTRGKLFHMPSNAICNRVIKRVYKKLFRSRK-NISFHTGRH 324

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323
            +AT+          +    G   +   E Y 
Sbjct: 325 TAATLLLYHDTPLTTIKEILGHTNIRTTEIYA 356


>gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
            +               G+  +        +       +  +         K  A +AG+
Sbjct: 58  FMWPSLQRKYPNAGREWGWQYVFPAPKYSTDPRSGKVRRHHIYEKGLQRRVKLAAEEAGI 117

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
               + H +R   AT   + G     +    G   V     YT   
Sbjct: 118 VKRVTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHVL 163


>gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 383

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 85/287 (29%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------ 121
           LI  Y      ++     ++   +  +F       ++            K          
Sbjct: 53  LIEIYQAVCESKEELQGKTIGKATVRAFRDSKKSFVQFLKTRRNEDCLPKEADKDLIESY 112

Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
               +    +  S+    L  +  + + A ++ Y+  +P     +E P  +   +     
Sbjct: 113 RLFMLSDLGNKESTVSNRLRHLHQVIRKAQQERYIREDPFELIDIETPTYERNALTSDDL 172

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  ++   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 173 HKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQN 232

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            ++       + +           +   +     + F+   +    KAG+      ++H 
Sbjct: 233 RSIVPLLPIAEEILTIVNDGRKEGLLFREFP-TNSHFNRKIRDIIIKAGLPSHTEATSHT 291

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 292 ARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIARE 337


>gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +         K  A  A +NK  + H  R   AT   + G     +    G   V   
Sbjct: 97  HHVQDQAVQRAVKQAARDADLNKPATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|326939641|gb|AEA15537.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 319

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 76/290 (26%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        +     +T K IR+     +  
Sbjct: 21  LVKDFLIEKKSQGKAASTLQQYSWDLRIILFLIHEHFENKKLIDLTRKDIRNLSIIFQEM 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 81  GMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIRDITFITEDQINWLI 140

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T +         +L  
Sbjct: 141 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 197

Query: 247 MTPIGKETFFINNDKQKMN------------------ATQFSIWFKAKATKA------GV 282
              + +      N + K                     + F+ W +  A         G 
Sbjct: 198 NHRVQQCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYWCEIFAKMLNEKEGKGF 257

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
             + H  R          G    +L +      +   E+Y K      + 
Sbjct: 258 KINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 307


>gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1]
 gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1]
          Length = 283

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 77/256 (30%), Gaps = 18/256 (7%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAI 134
             +     L+  ++ ++     +  R   +    +I    I+  +      R  + SS  
Sbjct: 9   IDTMTLEGLSPLTQKAYLYQIGEASRYF-NLPPDRIRRADIQRYILHLIRDRGWSWSSCR 67

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
           Q + ++  L++  + +  + +      +      + I      +         E  + + 
Sbjct: 68  QSVHALNFLYQKVLSRNRLRVALPHPNK-----QQRIPDLLYPNEVHRMISACERGKAKA 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMT 248
           A      +G+R  +  R  V  L      IK ++        +           +   + 
Sbjct: 123 AIMLAYATGMRAGEIVRLKVPDLDGKNSCIKIREGKGRRDRYVLFPEGLKVPLREYWRVF 182

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                  +  +  +K++ +      K  A +A ++K    H +R   A      G     
Sbjct: 183 RPTDYVVYGLDKDRKIDTSTLRRGLKLAAQQAEIHKEVRFHSLRHAFACHQLLRGMPLPR 242

Query: 307 LMATYGWKTVDQAETY 322
           L    G + +     Y
Sbjct: 243 LQILLGHQVIQTTFRY 258


>gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 324

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 46/298 (15%)

Query: 73  WLISE---YRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDF----DYRKITTKHIR 120
            L+ E   +  S      L+  +  S+E    Q +       G+       R++    IR
Sbjct: 13  ELLEERQNWLNSLKVEHGLSKLTLQSYERDMRQFLTFMAFYTGEKIDLQAMRQLLYTDIR 72

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-- 175
           + V  R+       S  + L+ +R   K+  +++       L+++  K+     +P +  
Sbjct: 73  AFVSKRRLHGIENRSLTRSLSGIRSFLKYLKKRQITGEANILNMKNLKKSNSLPKPLSEK 132

Query: 176 ------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                   D+          ++       L   GLR S++     Q++ ++  S++    
Sbjct: 133 QALNLINYDINTHNDTKWINARNSAILYLLYGCGLRISETLSLTPQNIIDDESSLRITGK 192

Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKA- 280
                 V L     +++                       + +N   F  + +       
Sbjct: 193 GNKTRIVPLLSSVREIIMKYYTLCPFDLHIELPLFRGARGKPLNPGVFQRYIRYLRQNLS 252

Query: 281 -------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                     +         AT     G     + +  G   +   + YT   D  R+
Sbjct: 253 LPTTTTPHTLRH------SFATHILSNGGDLRSIQSVLGHARLSSTQVYT-NVDSKRI 303


>gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 282

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 73/268 (27%), Gaps = 12/268 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
             L      +     +A  ++ ++      + +         +  + +++ +        
Sbjct: 2   SELRERMSNAMCLRGMAARAQEAYIDALVGLAKYY-HRSPADLRVEEVQAYLLHLIRDKK 60

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            A   +      F++  R+          +   K      +  ++E++ +     +   +
Sbjct: 61  LAYASVNQASCAFRFLYRRVLGRPEAGFDIPMAKVPQRLPQILSREEVAR-LIDSARTLR 119

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            R        +GLR S+ C   V  +          ++  K G      L    +  L  
Sbjct: 120 GRTLLMTTYAAGLRVSEVCALQVGDIESAADRMCLKVRQGKGGKDRYTLLSPHLLAALRT 179

Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301
                         +     M        + A    AG+      HG+R   AT   +AG
Sbjct: 180 YWRDTRPRLWLFPNRAGTGPMEIQTAQRIYYAARNAAGIAPEGGIHGLRHAFATHLLEAG 239

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329
              + +    G   +     Y   A   
Sbjct: 240 VDLYSIGRLLGHGHLSTTSRYLHLARSK 267


>gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1]
 gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188]
 gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98]
 gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus
           faecalis ATCC 29200]
 gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1]
 gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188]
 gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98]
 gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0411]
 gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2134]
 gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0635]
 gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX2141]
 gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0312]
 gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0645]
 gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0630]
          Length = 389

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 108/372 (29%), Gaps = 51/372 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GKI     K    + +            ++  L           +P      
Sbjct: 17  IVSYKDSNGKIR-QKWKDTKLKKKGNKKRAEKIRDEFLLELESQLAMECKCANP---DLL 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESR- 126
               +  Y + +    +A N+ + ++ Y  ++I +          ++   H++   +   
Sbjct: 73  FYDYLLNYLEVSK-KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYML 131

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T ++ I +   +R   + AV  E ++ N    V +PK+K    + + + ++ +   
Sbjct: 132 NDDCTANTVIHYHAFIRKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLD 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             SE  +  L      + GLR S+        +      I                    
Sbjct: 192 ILSEE-KLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKD 250

Query: 233 --------ITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNATQ 268
                    T+ L +   + L      ++                  F   D + M    
Sbjct: 251 QTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQY 310

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
            +        K G+ K   H +R  +A+I  D+G     +    G  +       YT   
Sbjct: 311 VTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLT 370

Query: 326 ADRIRLGIKNSR 337
           A       +   
Sbjct: 371 AGVKERAAEALE 382


>gi|228967300|ref|ZP_04128335.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792335|gb|EEM39902.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 373

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/353 (11%), Positives = 89/353 (25%), Gaps = 58/353 (16%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-KWLISEYRKSA 82
             RK    ++ L    E+TF             ++ +         TL    + E+ ++ 
Sbjct: 6   QVRKKKLVKVDLNQKKEATFH-------ANERERQLFHGMAADGKKTLLSEYLIEWLETY 58

Query: 83  HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---- 137
             G +A ++    E     QII    +     +     +  +    +   S         
Sbjct: 59  KKGKVAQSTYSLHERNINKQIIPYFQNIKLADMNKIEYQKFINHLINKGYSKRTVKIIHT 118

Query: 138 ---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
               S++      +  +    +  ++ +   + ++     TKE + +  +   +      
Sbjct: 119 TMSNSIKRAIDLDMIYKDFTNSILIAADHFNQHSKKDNYLTKEQVSKLLNAAHKDKILYY 178

Query: 195 AFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----------------- 236
              + L  SG+R  ++         +    +                             
Sbjct: 179 TLIYTLVESGMRKGETTALEWDTNIDLDNKMIHIDRTINYHAYTPTGKKNSKDLIGKTKT 238

Query: 237 ----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                   +     L         F      + +  +       
Sbjct: 239 YDSVRSITISDRLVSVLKTFKTYQNECKLKLGAKYDKTFDFVFTTTGKPIPHSTLKNVLD 298

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
                A V K S HG+R   A +  +AG     +    G K ++     Y+  
Sbjct: 299 RILKNAEVPKISVHGLRHTHAVLLLEAGVEMKYIQERLGHKNIEITSNIYSHV 351


>gi|229120195|ref|ZP_04249446.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus 95/8201]
 gi|228663236|gb|EEL18825.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus 95/8201]
          Length = 322

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 68/288 (23%), Gaps = 28/288 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + D   +T K IR+     +  
Sbjct: 24  LVKDFLIEKKAQGKAASTLQQYGWDLRIILFLIHEHFNNKDLIDLTRKDIRNLSIIFQEL 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFK 183
             + +     ++++R   ++    +       +       PK     I   T++ +    
Sbjct: 84  GMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPVREITFITEDQINWLI 143

Query: 184 SFWSEGSQPRLAFEFLLY---------------SGLRCSDSCRAGVQHLQNNIFSIKTQK 228
               E  +  LA    L                +GL                       +
Sbjct: 144 DELIENEKYMLATYLALSYYSAARKNEVYQVQKTGLTERYYTNVVRGKRGKKFRLYYNPR 203

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKS 285
               I + +       +    +            K     +   F     +        +
Sbjct: 204 VQKCIRLYIEQRGKDAIPDLFVRVYKNGGRKLLNKSVFNYWCKIFAKMLYEKEGKEYKIN 263

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            H  R          G    +L +      +   ++Y K      +  
Sbjct: 264 PHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 311


>gi|134095495|ref|YP_001100570.1| putative integrase [Herminiimonas arsenicoxydans]
 gi|133739398|emb|CAL62448.1| Putative integrase [Herminiimonas arsenicoxydans]
          Length = 387

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 31/303 (10%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKP----TTLKWLISEYRKSAHWGSLAVNSRISF 95
                       TG     +Y    R        T+   + ++        L  ++   +
Sbjct: 48  TRIAAEVRDKVRTGLFAYADYFPQSRHAKPDHVGTVGEFMDKWYAQLE---LKPSTLSEY 104

Query: 96  ESYFDQI-IRKSGDFDYRKITTKHIR-SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           +   +       G     KIT   I  +       +  +    L  +R +F  AV    +
Sbjct: 105 KRMKENFWKPALGRKRVDKITHSDITTALKSGTWSSNRTRNNMLYMLRAVFNLAVADGVI 164

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCR 211
             NPC ++E  + + +   P++  +  +  +   E    ++A  +EF+ +SGLR  +   
Sbjct: 165 HKNPCATIENAQWQRKKPDPFSIVEANRIIASLHEKQHQQVANFYEFMFFSGLRTGEGLG 224

Query: 212 AGVQHLQNNIFSIKTQKTG-----------TIITVELPDGFMKLLAMTPIGKETFFINND 260
               ++  +   +  +++            +  TV+L +  +  L               
Sbjct: 225 LDWANVDLHKRIVVIRQSFVRGEMQETKTSSERTVKLTNRALDALKRQKAWTLLDKSGRV 284

Query: 261 KQKMNATQFS--------IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
               +  +           ++K      G+  +  +  R   ATI   +GA    + A  
Sbjct: 285 FHNPSTNRPWAKEQNISEPYWKPALKLLGIRYRRPYNTRATYATIGLMSGARPAYMAAQL 344

Query: 312 GWK 314
           G  
Sbjct: 345 GHS 347


>gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 405

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS--GDFDYRKITTKHIRSG 122
            K  +    I  Y K   + ++   +  S+ S     I+      +   + I T  I+  
Sbjct: 82  DKEISFCNFILGYVK-MRFKTIDDATYSSYLSNTKISILPYFFKENKKLKDINTFDIQKY 140

Query: 123 V-ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     SA     +   + + FK+A +   + INP L+VE+PK+     + +  E 
Sbjct: 141 YFHELNVRGVSANTVIHYHNLLSLTFKYAQKIGIITINPMLNVEKPKKVRYIAKVYNHEQ 200

Query: 179 MQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           +++       E     L      + GLR S+        +     ++    T T      
Sbjct: 201 IKEMLEILKKEDKVLYLGVVITSFFGLRRSELLGLKWSAINFVDNTMSIVHTVTETNLDG 260

Query: 233 ----------------ITVELPDGFMKLL----------------AMTPIGKETFFINND 260
                            +  LP    ++L                      +E  ++N  
Sbjct: 261 KNILIKKDKTKSTAGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYTKDEEYVYVNEG 320

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +       +  F+    K  + +   H +R   ATI  ++     ++    G  +    
Sbjct: 321 GELHKPKFLTNGFRKFLAKHNLTHIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKTT 380

Query: 320 E-TYTKGADRIRLG 332
              Y    ++  L 
Sbjct: 381 MDIYVHQMNKSNLS 394


>gi|170682065|ref|YP_001743018.1| phage integrase family site specific recombinase [Escherichia coli
           SMS-3-5]
 gi|170519783|gb|ACB17961.1| site-specific recombinase, phage integrase family [Escherichia coli
           SMS-3-5]
 gi|323977707|gb|EGB72793.1| phage integrase [Escherichia coli TW10509]
          Length = 406

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 100/368 (27%), Gaps = 30/368 (8%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRI----RLPYPHESTF-IPAYMSALTGSTPKREYINS 63
             +  + ++ GK+ +YFR   G R     RL         + A     T          +
Sbjct: 31  GGLEIKHSKGGKLTWYFRYRTGGREVAAERLKLGAYPELSLKAAREKRTLCRAWLAEGKN 90

Query: 64  PR----------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           PR           KP T+K  I+ + +     +         +     II   G     K
Sbjct: 91  PRYELCATVQEALKPVTVKEAINYWLEEYAKDNRKD-YIKLVQRMDKHIICHIGAIPLDK 149

Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
             T+   +  +  RK  P +A   + + +   K+  R+ Y   N    +           
Sbjct: 150 CDTRQWIACFDRVRKKAPVAAGHVMQTCKQALKFCRRRRYAFSNALDDLIVTDVGKRAEI 209

Query: 173 PWTKEDMQQ----------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                   +                  +  RL   F   +        +           
Sbjct: 210 RERVHSNSELKEILRAIDGDVFAPYYSALMRLLIVFGCRTAEIRLSEIKEWDLKEMLWTV 269

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             +  KT   I   +PDG +  +           +   + K + T       A       
Sbjct: 270 PKEHSKTKVTIFRPIPDGILPFIQKLVEQNAHTGLLLGELKKDTTVAQYGRNAHKRLKQE 329

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRI 339
           + + H  R    T+  D G   H +      +   Q +TY         R  +     R+
Sbjct: 330 HWTLHDFRHTFTTMLNDLGVDPHIVEHITAHQMPGQQKTYNHSRYLQAKRDALNLWVERL 389

Query: 340 SSVVDSDD 347
             +   ++
Sbjct: 390 DMIAGYNE 397


>gi|153810539|ref|ZP_01963207.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
 gi|149833718|gb|EDM88799.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174]
          Length = 332

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 89/274 (32%), Gaps = 14/274 (5%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESR 126
            + +++ +  S    + ++ +   ++    ++I    +   + ITT  IR       E+R
Sbjct: 54  WQKILNTFLASKRIENCSLGTLDRYKECVTKLITSL-NKRLQDITTNDIRYYLAMYQETR 112

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K + S        +   F W   + Y+ INP   +++ K   +  +P+T  + +  +   
Sbjct: 113 KISISYMDTIRRYLSSFFAWISDEGYININPMRRLKKIKVPQKIKKPFTPAEREHLRCSA 172

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKL 244
               +     EFL  +  R  +  R   + +  N   I     K      V L D     
Sbjct: 173 RC-QRDIAIMEFLYSTAARIGEVVRLDRRDIDWNRNEIIIYGEKGKKERKVYLTDECAYH 231

Query: 245 LAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298
           L    + +                ++         +    K  ++   H  R+   T + 
Sbjct: 232 LRKYLLSRNDANPALFVSSKQPHTRLGKQAIQSMLRTLGQKTDIHAHPHKFRRTLLTDAG 291

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
           + G    E+    G +  D    Y   ++     
Sbjct: 292 NRGIPLQEIQHYAGHEKPDTTMMYVTVSEENVRA 325


>gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37]
 gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37]
          Length = 331

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 82/289 (28%), Gaps = 37/289 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHT---P 130
              Y ++     L+ ++  S+     +I  K   DF + ++    +   +++   T   P
Sbjct: 36  AESYMRTL--SDLSQSTVRSYLRNIARIFDKNIEDFPWHQLDQDVVIYILDNLTKTGLAP 93

Query: 131 SSAIQFLTSMRVLF-----------KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            +   +L++++ +            +       +       +++                
Sbjct: 94  GTVGSYLSAIKGVCLSALNKKTMSPERHHLINIIKKPKGSRIKKEGTLLSAENIKDLIKS 153

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238
                  ++G + +     L   GLR ++     +  +           K+     +   
Sbjct: 154 CDQDLNKTKGVRDKAIIIILRGCGLRRTELINIRINRINFTEKKLTVVGKSNKEREIWFS 213

Query: 239 DGFMKLLAMTP----------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
           D   + ++                     +         Q++ +      F+AK     V
Sbjct: 214 DRVKEAISDWLGLINKASLQISDDNFLFLRAHKSGKIINQRICSQTIFDIFQAKQKLMMV 273

Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
            K   H  R+   T   + G    ++    G  + +    Y    ++ R
Sbjct: 274 KKFGPHDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVY--DLNKKR 320


>gi|315023286|gb|EFT36296.1| hypothetical protein RAYM_08905 [Riemerella anatipestifer RA-YM]
 gi|325335153|gb|ADZ11427.1| integrase/recombinase [Riemerella anatipestifer RA-GD]
 gi|329025335|gb|AEB71699.1| DNA breaking-rejoining enzyme [Riemerella phage RAP44]
          Length = 414

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 113/365 (30%), Gaps = 46/365 (12%)

Query: 19  GK-IIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72
           GK    +FR   G  IR+         F      A   +   RE + S   P+     +K
Sbjct: 47  GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 106

Query: 73  W--LISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---------TKHI 119
              LI    +       +L+ NS  +F S  +  I    +  Y ++           + +
Sbjct: 107 RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 166

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +  +  +  + L  +R +F   +  +Y+  NP   ++  K   +        + 
Sbjct: 167 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 226

Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  S   +       +    + Y G+R ++  +  V  L      I      T    + 
Sbjct: 227 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 286

Query: 238 PDGFMKLLAMTP----------------------IGKETFFINNDKQKMNATQFSIWFKA 275
                + L                           G +  +   ++ K+     +  ++ 
Sbjct: 287 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 346

Query: 276 KATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 G++K+ + ++   A     AG     + A +G  T    E Y +     R   +
Sbjct: 347 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYARIMKLQR--FE 404

Query: 335 NSRRI 339
            +++I
Sbjct: 405 EAKKI 409


>gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 309

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 83/287 (28%), Gaps = 26/287 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + K      L+ N+   +   F      +   +  +     + +    ++        + 
Sbjct: 16  FLKYKAMEGLSYNTLYGYSKDFTVFNEVARGDNLEE----KVLNFFLEKRDLKGGYNGYR 71

Query: 138 TSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +   F + + +E +  NP         +         +   K+ +           + 
Sbjct: 72  KRLNTYFNFLIEREIIEENPIVKLGIKRKKEDAEPRPAEKESLKKILSLLDLNSYTEFRD 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMT 248
            +     L +G+R +++ +            ++             + L DG +K +   
Sbjct: 132 YVFILLTLDTGIRPAEAVQVYENLFDYYNKDLRITPSIGKCNKSRILPLSDGVIKYVKRL 191

Query: 249 PIGKETFFINNDKQKMNATQ-------FSIWFKAKATKAGV----NKSAHGVRKFSATIS 297
               +     ++   ++ +            F        +      + + +R + AT  
Sbjct: 192 FEINKRNNFKSNNLFLSDSGKELSTTAIQRKFARYCDILELCGEDRITPYQLRHYFATTY 251

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            + G     L    G   +   + Y K  ++  +  ++ RR S V D
Sbjct: 252 LENGGNIVYLQYLMGHSDIKMTKKYLK-INQDSVANEH-RRFSPVND 296


>gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147]
 gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147]
          Length = 273

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 79/263 (30%), Gaps = 12/263 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--------SGVESR 126
           + EY        L  N+  ++ +   Q+       D+       I              +
Sbjct: 4   LKEYEYFLKDNELGKNTIKNYLTTLRQLDDYIVSNDFSLDKETLIEFKQYLKDFQYKSGK 63

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +  Q L  + V  KW   + YV+    LSV+  K +T+  R    E   +     
Sbjct: 64  NYKLKTINQKLIIVNVYLKWLETEGYVSGR--LSVKLLKSQTKEHRESITEADYKRLIKN 121

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           S   + RL    +  +G+R S+ C   V+ L   I     +  G    + +P    K L 
Sbjct: 122 STTEEMRLFILVIGNTGMRISEVCSFKVEDLNKKII--VIENKGKQRIITIPQFLKKQLK 179

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306
                         K +             A         H +R + A      G  A  
Sbjct: 180 SYVKKAGIEETIFYKNQRTYRVNLKKIAGIAKVNKEKVYPHSIRHYFAKSFLMNGGDATV 239

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           L    G + +     YTK +   
Sbjct: 240 LQQLLGHEQIATTTIYTKLSSNE 262


>gi|255306186|ref|ZP_05350358.1| integrase [Clostridium difficile ATCC 43255]
          Length = 396

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 96/378 (25%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K     GK  + +         +P           +S        ++ ++      
Sbjct: 25  RYVYKYTDIFGKPQFVYAWK-----LVPTDKTPAGKRDDISLREKEKQIKKDLDDGIDTV 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSG-- 122
               T+  L  +  K+    ++  N++I  +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYEK--KNNQRKNIKRNTKIGRQYLMNALENDPLGMRAIDTVKQSDAKEWAI 137

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDM 179
            +  + ++  +   +  S++  F  A++ + +          +  +  TE     T E  
Sbjct: 138 RMNDKGYSYKTIDNYKRSLKASFYMAIQDDCIRKNPFNFKLSDVLEDDTEAKVILTPEQE 197

Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++   F    +  S+       LL +GLR S+ C         N       +        
Sbjct: 198 EKLLAFMETDNVYSKYHDEVILLLETGLRISELCGLTTHIDMLNRVINIDHQLLRDTEVG 257

Query: 232 -----------IITVELPDGFMKLLA----------------MTPIGKETFFINNDKQKM 264
                         + L +   + L                  +                
Sbjct: 258 YYISTPKTKNGKRELPLTERAYQALERILKNRGKAQPLVVDGYSNFLFLNREGLPKVAGN 317

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +      K             + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YESMVRGLIKKYNKTHKDKLPNITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|168748107|ref|ZP_02773129.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755215|ref|ZP_02780222.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168766305|ref|ZP_02791312.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774403|ref|ZP_02799410.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780458|ref|ZP_02805465.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784661|ref|ZP_02809668.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168798292|ref|ZP_02823299.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195935831|ref|ZP_03081213.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807294|ref|ZP_03249631.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812410|ref|ZP_03253739.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819790|ref|ZP_03260110.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397184|ref|YP_002273588.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|254796067|ref|YP_003080904.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225166|ref|ZP_05939447.1| phage integrase family protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|187769985|gb|EDU33829.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017523|gb|EDU55645.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001859|gb|EDU70845.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357551|gb|EDU75970.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364180|gb|EDU82599.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374991|gb|EDU93407.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189379107|gb|EDU97523.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208727095|gb|EDZ76696.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733687|gb|EDZ82374.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739913|gb|EDZ87595.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158584|gb|ACI36017.1| phage integrase family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|254595467|gb|ACT74828.1| phage integrase family protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320190827|gb|EFW65477.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC1212]
 gi|326341907|gb|EGD65690.1| Site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. 1125]
          Length = 365

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|30263937|ref|NP_846314.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Ames]
 gi|47529369|ref|YP_020718.1| prophage lambdaba02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186785|ref|YP_030037.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Sterne]
 gi|65321262|ref|ZP_00394221.1| COG0582: Integrase [Bacillus anthracis str. A2012]
 gi|30258581|gb|AAP27800.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Ames]
 gi|47504517|gb|AAT33193.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180712|gb|AAT56088.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. Sterne]
          Length = 325

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 80/293 (27%), Gaps = 34/293 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVE 124
           K L+ ++         A ++   +      I+    +   +    ++T K IR+     +
Sbjct: 22  KSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIFQ 81

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +     ++++R   ++    +       +           +R  T    +Q + 
Sbjct: 82  ELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEW 141

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              E     +  +++L + L  S    A    +        T++  T I         +L
Sbjct: 142 LIDE---LIVQEKYMLATYLALSYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRL 198

Query: 245 LAMTPIGKETFFINNDKQKMN------------------ATQFSIWFKAKATKA------ 280
                + K      N + K                     + F+ W K  A         
Sbjct: 199 YYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNYWCKIFAKMLYEKEGK 258

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               + H  R          G    +L +      +   ++Y K      +  
Sbjct: 259 EFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 311


>gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 363

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 82/263 (31%), Gaps = 26/263 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
            +           +  L+V+    + +Y  +      D                S+K + 
Sbjct: 114 FEEFCER---KCSFRDLSVSLCEKYRAYILR------DKHLTS-----------SKKISH 153

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++A  +      + + A   + ++ +    ++      + ++ +   D            
Sbjct: 154 NTASAYFNVFLKMVRLAYEDKIISHDYTEIIKPIVWNHDTLKEYLSNDEVNILRQTPYSP 213

Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            P L  A  F +++GLR SD      +++     +   +   +   V +     K     
Sbjct: 214 YPELPKACLFSIFTGLRRSDILALRWENIVKRSHNTFIEIQCSKTGVLIRLPLSK--PAL 271

Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
            +  +        Q +  +  ++  +     AG+ K  + H  R   A +  + G   + 
Sbjct: 272 NVLGKRKEEGIVFQSLTISILNLHVQKWLASAGITKHITFHCFRHTFAMLLQEKGVEIYT 331

Query: 307 LMATYGWKTVDQAETYTKGADRI 329
           +      K V   + Y K  ++ 
Sbjct: 332 ISKLLAHKQVSSTQIYAKVTNQQ 354


>gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328]
 gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328]
          Length = 277

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            G+  +       ++       +  ++  +     K    +A +  + S H +R   AT 
Sbjct: 172 WGWQYVFPAAHRSRDPRSGAVRRHHLSEDRIQRRMKPAKQQASITKHGSCHTLRHSFATH 231

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G     +    G K V     YT   +R
Sbjct: 232 LLEDGYDIRTVQELLGHKDVKTTRIYTHVLNR 263


>gi|167756121|ref|ZP_02428248.1| hypothetical protein CLORAM_01641 [Clostridium ramosum DSM 1402]
 gi|167704113|gb|EDS18692.1| hypothetical protein CLORAM_01641 [Clostridium ramosum DSM 1402]
          Length = 363

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/333 (9%), Positives = 106/333 (31%), Gaps = 22/333 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           S R  P++ +  T      Y   +  G+  +                +        +   
Sbjct: 20  SRRRRPYMVRITTG-----YEINEKTGKSKQKYGIIGYAKTRTERLQMLADYHNAPF--D 72

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                TT + +  ++ K   + + + ++   + + ++       +  +R++ T  ++  +
Sbjct: 73  LNNSSTTFREVYEQWSKE-KFENASKSTINGYRASYNT-CTLLFERTFRELKTSDLQKVI 130

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDMQ 180
           ++ +    +          L+K+A++ +    +    V+  K   +             Q
Sbjct: 131 DTCEKNYPTLKNIKILFNQLYKYAMKNDICNKDYSKYVDIAKYSNKNPNSVERKPFTKEQ 190

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
               +             L+Y+G+R S+      +++  +    +   + T   +     
Sbjct: 191 IDIFWDLSDDIYYQIILMLIYTGVRISEMLDLKKENIYLDEQYFEIIDSKTENGIRKVPI 250

Query: 241 FMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294
              +L       ++          + K       +  +F+    +  ++ + H  R    
Sbjct: 251 SDYILPFFKNWYQSSKIEYLLHTPDQKHFKYRNYYDSYFRPLLDRFNLDHTPHCCRHTLV 310

Query: 295 TISADAGATAHELMATYGWK---TVDQAETYTK 324
           ++ A+A  ++       G     ++++ + YT 
Sbjct: 311 SLMAEANISSTFNKMIIGHAGAMSLNE-KVYTH 342


>gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16]
 gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16]
          Length = 379

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 81/326 (24%), Gaps = 73/326 (22%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKH------ 128
           +Y K       + N+  ++     Q          DYR++  + +   V   ++      
Sbjct: 30  KYLKYLDTTGKSRNTLKTYCYALKQYFVFLQEKKKDYREVRLEDLVEFVVWLRNPYESAK 89

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----------------- 160
                      T  +    +T++   + +  R E +  +                     
Sbjct: 90  VTSLQPVKAKKTEKTINLTITAVTNFYDYLYRNEEIQNDMVDKLLKQVFTGGRTRYKDFL 149

Query: 161 ---------VERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                         +  E  +      ++  Q     +   + RL  + L  +GLR  ++
Sbjct: 150 YHVNKNKPSNRHILKVKEPRKKLKVLTKEEVQQLIEATTNIRDRLLIQLLFETGLRIGEA 209

Query: 210 CRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMT-------- 248
               ++    +  +    +                   + +    M LL           
Sbjct: 210 LSLFIEDFIFDHKNGHRIRLVNRGELENGAKLKTGEREIYVSQALMDLLDDYLYEVVDEL 269

Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
                         N  Q M        FK    K G++   H +R   AT+        
Sbjct: 270 NLNTNFVFVKLRGKNVGQPMTYCDVEALFKRLRKKTGIHVHPHLLRHTHATMYYQQTKDI 329

Query: 305 HELMATYGWKTVDQAE-TYTKGADRI 329
            ++    G   +      Y   +D  
Sbjct: 330 KQVQERLGHSQIQTTMNLYLHPSDEE 355


>gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +  +     +  +       +  ++        K    +AGV K A  H +R   AT 
Sbjct: 74  WCWQWVFPTDNLSADPRTGQVRRHHVSEDILQQAVKRAVKRAGVTKRASCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G   V   + YT   
Sbjct: 134 LLEDGYDIRTIQELLGHADVSTTQIYTHVL 163


>gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1]
 gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94]
 gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94]
 gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1]
 gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94]
 gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1]
          Length = 308

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 79/264 (29%), Gaps = 16/264 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESR 126
           ++  L ++Y           + + +  S+  +I        +     +    I   +  R
Sbjct: 40  SVAELTAKYINILWDDG---SHKYNVRSFLGEIDEILKGARFSGFDQEMLDSIIGTLRER 96

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++ ++  + + ++  L + A +   +   P    ++ +          +E         
Sbjct: 97  GNSNATINRKMAALSKLLRKAHKMGDIFNLPEFIRQKERVGRIRFLEQEEEKRLFAAIKS 156

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
                 RL   FL+ +G R  ++       +Q    +    K+    TV L     K   
Sbjct: 157 RCEDSYRL-SVFLVDTGCRLGEAIGLTWNDIQEQRVTFWVTKSNRSRTVPLTRRARKASH 215

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGA 302
           +     +  F   ++ +     F   +     + G+        H +R   A+       
Sbjct: 216 IPRERLKGPFSMLNQVR-----FRQIWNEAKAEVGLGADDQIVPHILRHTCASRLVRGDI 270

Query: 303 TAHELMATYGWKTVDQAETYTKGA 326
               +    G +T+     Y   A
Sbjct: 271 DIRRVQMWLGHQTLQMTMRYAHLA 294


>gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
 gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 31/296 (10%)

Query: 75  ISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSG--DFDYRKITTKHIRSGVESR-- 126
           I +Y++     + A ++       ++     +  K G  D     +    I++       
Sbjct: 116 IRDYKRQIG-KTKAQSTYRGLVDEYKCLSCYLKDKLGTEDIPLMSLDMDFIKNYYSWMLS 174

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                 S+A + + +++ L   A+ + ++  +P           +     ++ED+Q+  S
Sbjct: 175 VRGLAKSTAFERVNTLKWLMYLAMDEGWIHKHPFKKFVCKPEYKKRP-FLSEEDLQRVIS 233

Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +    R  F F+ +SGL  +D      +++  +           + T       
Sbjct: 234 VKLSYRRQQAIRDMFVFMCFSGLAHADLKELSYRNVHTDSDGNTWLVGNRVKTKAPYVVK 293

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAG--VNKSAHGVRKFS 293
           +  + +  I K                           K    KAG  V  S H  R   
Sbjct: 294 LIPIVVELIEKYRGVNEFKVSPDRVFPVGEIGSMEDSLKRIGEKAGCSVRVSPHVGRHTF 353

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT--------KGADRIRLGIKNSRRISS 341
           AT++   G     L    G KT+   + Y         +  DR+R  I    R+++
Sbjct: 354 ATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKIGGMFRLAN 409


>gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
 gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16]
          Length = 875

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 39/337 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R RH       R G G R  L +  +  F+           P+R           +  
Sbjct: 537 RYRARH------VRPGPGDRAALRHLID--FLDRERLISAQRMPERRLTPIE-----SCT 583

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG--VESRK 127
               EY       +L+  + +++  +  + +      G     ++    + +    ++ +
Sbjct: 584 QAYVEYL--HEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALR 641

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQ 181
                A    T++R   ++A  +  + ++         +               ++ +  
Sbjct: 642 LHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVS 701

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236
                + G +       L   GLR  +     +  +  N   +  +             +
Sbjct: 702 INRRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPAD 761

Query: 237 LPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
           +       L        +  +             A+      +    +AG++     AH 
Sbjct: 762 VGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQ 821

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   A      GA+  E+    G       + YTK 
Sbjct: 822 FRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKV 858


>gi|253688018|ref|YP_003017208.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754596|gb|ACT12672.1| integrase family protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 409

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 103/361 (28%), Gaps = 34/361 (9%)

Query: 10  FVTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTG----------- 53
            +  + T  G  ++ FR           I L      +   A                  
Sbjct: 30  GLELQVTPSGSKLWRFRYYKPFTRKRAMISLGAYPSVSLAEARKLREDARLLLSKDVDPQ 89

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYR 112
              + E          T + + +E+ K+     LA ++    + S    +    G     
Sbjct: 90  EHKQAEQSRQKNATENTFEKVAAEWFKTKESAGLATHTLNDIWRSMSKYVFPHIGSMPIA 149

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPK 165
            IT +     +E    +    +  +    +  +  +A+    V++NP         +   
Sbjct: 150 NITAQRFIGALEPTHASGRLETVKRLSQRINEVMDYALNSGLVSVNPAARIGRTFHKPKV 209

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
           +    + P     + +  SF S G Q R   E+ L +  R +++  +    +  +    +
Sbjct: 210 KHRPALLPEQLPLLMKTLSFASIGRQTRCLIEWQLLTMTRPAEAAESRWDEIDFDAKEWR 269

Query: 226 TQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280
                  +    +     + L +  + K      +                       + 
Sbjct: 270 IPAGRMKMKREHVIPLSEQALGILEVMKPISKHRDYVFPGYRNPLEPMNSQTANMALKRM 329

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG--ADRIRLGIKN 335
           G      AHG+R  ++TI  + G     + A       ++    Y +    ++ R  +  
Sbjct: 330 GFKDMLVAHGMRAIASTILNEKGFPPDVIEAALAHIDTNEVRRAYNRAQYLEQRREMMAW 389

Query: 336 S 336
            
Sbjct: 390 W 390


>gi|255280076|ref|ZP_05344631.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
 gi|255269167|gb|EET62372.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Bryantella formatexigens DSM 14469]
          Length = 380

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 90/373 (24%), Gaps = 51/373 (13%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIY--------YFRKGHGRRIRLP----------YPHEST 42
           M  + +LP          G             + K  G+  R             P    
Sbjct: 1   MATAKKLP---------SGSWRCLAYSHTEEVYDKKTGKMKRKRIYESFTSNDPSPRGKK 51

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
                 +              P+    TL   I  Y +S    + +  +   +E      
Sbjct: 52  EAELAAAQYQLEKDTLLMKKRPKYGEMTLTEAIDAYIESRKILNRSPTTIQDYECIKKYA 111

Query: 103 IRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLT---SMRVLFKWAVR 149
            +   DF  + +  + ++  +            R   P SA +       +  +     +
Sbjct: 112 FQDLMDFKLKDLDEQILQEAINVEARRPSNKTKRIQKPISAKRLKNEWGLVSAVLHKYSK 171

Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLR 205
                      +E P      +   +  D+ +            LA           GL 
Sbjct: 172 NI-----DFEEIELPTVAQRIVELPSAGDVMRIVKGTEIELPVLLAMWLSFSMSEVRGLT 226

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
            S S       +   +  +  +     +           +             +   +M+
Sbjct: 227 KSKSISGDYLTVNEVVVDVGHKAVRKEMPKNPTRTRRHRIPPYIKYLIDQVEGDSLVQMS 286

Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
                  +     + G+   + H +R  +A++ A             GWKT     + Y 
Sbjct: 287 GRALYRRWIRLQDENGMEHITFHDLRHLNASVMALLRIPDKYAQERGGWKTDRVMKKIYM 346

Query: 324 KGADRIRLGIKNS 336
           +     R  + + 
Sbjct: 347 QTFSEERERVDSI 359


>gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 328

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 80/275 (29%), Gaps = 38/275 (13%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  +    +        DF   ++              +I    E RK   +
Sbjct: 32  KSEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S    L++++ L+K             + + +  R  E +   + +D+++    +   S 
Sbjct: 92  SVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDSE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPD---- 239
              +       L Y+G+R  +      +H         F +   K+G  +   +      
Sbjct: 152 KKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSGKDVYKPIHKSLVK 211

Query: 240 ---GFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
               + K L                      D   ++    +   +      G + S H 
Sbjct: 212 KLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +R   AT  + +GA   E+    G       E Y 
Sbjct: 272 IRHAIATELSLSGADILEIRDFLGHSDTKVTEVYI 306


>gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 91/339 (26%), Gaps = 39/339 (11%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY-RKSAH 83
            +K H    RL          A           +       K+    K LI+ +      
Sbjct: 78  VKKNHKSSTRLNAYISKKIADAEGEIADLERRNQSTSARRIKEAIKGKPLINFFEFAYDR 137

Query: 84  WGSLAV----NSRISFESYFDQIIRKSGDFDY--RKITTKHIR----SGVESRKHTPSSA 133
              L      ++  S+++  ++  R  G  +     IT   ++           +  ++ 
Sbjct: 138 CEKLKDTVTLSTYRSYKNNIEKFERFVGHREIMFDDITATTLKNYASHCSSKLGNNNTTI 197

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                 + ++F+ A  ++ ++         +  K KT       ++          +  +
Sbjct: 198 NYAFRILNLMFREAKSEDLISNELAPFTKFKVKKNKTTKRYLNEEQFDAFMNLEVPQEHK 257

Query: 192 PRLAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
            ++  +  ++S    GLR  D      ++  +    I      T     +  G   +  +
Sbjct: 258 AQVIKDMFIFSVFSGGLRFGDVIELQWKNYDSKNHRITKTIRKTKRQHSIKIGQKAVDIL 317

Query: 248 TPIGKETFFINNDKQKM-----------------NATQFS---IWFKAKATKAGVNK--S 285
                +    N+                           S   ++      +  +    S
Sbjct: 318 EKYKTKDQKQNDIIFPFAKVDELYFKDREHRSLITNRAISLSNMYLSRIGKELELPFNLS 377

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            H  R   AT + + G     +        +   + Y K
Sbjct: 378 FHISRHTFATRALNNGMRIEHVSKLMDHSDIGITQVYAK 416


>gi|291563740|emb|CBL42556.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 425

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 98/380 (25%), Gaps = 51/380 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     G+  + +        ++P         +    +       +       K 
Sbjct: 29  RYAYKYIDTFGEPQFVYSWKLVPTDKVPAGKRPCL--SLREKIKQIQKDLDDGIDTIGKK 86

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK 127
            T+  L  +Y  +   G++   ++ S +     +   K G      +     +      +
Sbjct: 87  MTVCQLYEKY--TRQRGNVRKGTQKSRQQLMKLLSEDKLGAASIDSVKLSDAKEWALRMQ 144

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF 182
                 S+      S++ +F  AV+ + +  NP      E     T    P T     + 
Sbjct: 145 EKGVAYSTICNSKRSLKAIFYMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPTQENEL 204

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229
             F        +       LL +GLR S+ C      L      +               
Sbjct: 205 LDFMQNDPVYVKYYDEVVILLETGLRISELCGLTPADLNFEKRFVNVDHQLLRSTEDGYY 264

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFS 270
                         ++    + F ++L     GK                     A  + 
Sbjct: 265 IEAPKTESGFRQVPMSAAAYEAFERVLKKRRDGKCIEVDGYKDFLFLNRDGLPKTAVNYD 324

Query: 271 IWFKAKATKAG------VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
             FK  A K        +    + H +R    T  A+AG     L    G   +     Y
Sbjct: 325 AMFKCLAKKYNKCHKEPLPDVMTPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384

Query: 323 TKGADRIRLGIKNSRRISSV 342
              A       +   R+ + 
Sbjct: 385 YAHATF-HSAQEEMERLQAK 403


>gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA]
 gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA]
          Length = 409

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 88/290 (30%), Gaps = 26/290 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK-SGDFDYR--KITTKHIRSGVE 124
           L  +I++  +S         +  ++          ++K  G  D    ++  + IR  ++
Sbjct: 114 LDAIIAD-IESRIGIDYKKGTLPNYQYTRLTLGLFVKKRYGTDDVAFGELYEQFIREYMD 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +   +L  ++   + A +  +      +  + P++K    +  T+ED  
Sbjct: 173 FCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFL 232

Query: 181 QFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +       +      R  F F  Y+G   +D+     ++L  +       K       
Sbjct: 233 KIRDLEIPERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYH--RKK 290

Query: 236 ELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL          +                    K+    +G+  +   H  R
Sbjct: 291 NKMLARVKLLPEALSMLEKYKDPTRPTLLPPQEFRVLRGNMKSLRVLSGISMDLVYHVGR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A++   + G     +    G   +   + Y +   +     ++  + 
Sbjct: 351 HSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKK--LFEDMDKF 398


>gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism]
          Length = 288

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            G+  L     I  + +     +  ++              AG+    S H  R   AT 
Sbjct: 200 WGWQYLFPSASICADPYSRLPVRHHLHPGTVQRGVARAVRAAGLAKPASCHTFRHSFATH 259

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
             D+G     +    G   V     YT  
Sbjct: 260 LLDSGYDIRTVQELLGHSNVKTTMIYTHV 288


>gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium]
 gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium]
 gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium]
 gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 2/89 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWYYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
               G     +    G K V     YT  
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHV 161


>gi|258438228|ref|ZP_05689512.1| transposase B [Staphylococcus aureus A9299]
 gi|58577495|emb|CAG29648.1| transposase B [Staphylococcus lentus]
 gi|124001376|emb|CAL64014.1| transposase B [Staphylococcus warneri]
 gi|257848272|gb|EEV72263.1| transposase B [Staphylococcus aureus A9299]
          Length = 639

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 76/291 (26%), Gaps = 34/291 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
            K ++  Y K     + + +  +   S   +          G     ++T   I      
Sbjct: 223 FKEIVKRYCK-LMLNTASFSHVVDIASKLKEFFNFMNKNCEGIQRIHQLTRNEIEQYFNY 281

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
              +   PS+    ++++ V F    R ++            + PK      R   +  +
Sbjct: 282 INLKGLKPSTVTGRISTLDVFFTTIQRYDWKDTPSKILIFQEDYPKVPKALPRYIDEHIL 341

Query: 180 QQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTII 233
           +Q      +          +L   G+R S+ C      +      +        K     
Sbjct: 342 EQLNGKLDKLEPYIATMVMVLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEH 401

Query: 234 TVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282
            + +      L+ +                F   D   +    F +     A +  +   
Sbjct: 402 IIPISKEIAALILVQEQRVADELDDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDS 461

Query: 283 -----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                   AH  R    T   + G   H +    G ++ +    Y    D 
Sbjct: 462 NGEIFRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDE 512


>gi|54294024|ref|YP_126439.1| hypothetical protein lpl1085 [Legionella pneumophila str. Lens]
 gi|53753856|emb|CAH15322.1| hypothetical protein lpl1085 [Legionella pneumophila str. Lens]
          Length = 413

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 99/331 (29%), Gaps = 27/331 (8%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSAL------TGSTPKREYINSPRKKPTTLKWLISEY 78
           F      RI L +  E T   A   AL                 +   +  TL  +  +Y
Sbjct: 52  FINKKRCRITLGHYPELTAEMAKNKALHLLGQIAMGIDPVAEKKAAEVRDITLNQVFKDY 111

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQF 136
            K+    +L   +  +++   D+            IT   +    E     H  + A   
Sbjct: 112 LKTR--KNLKPKTIDNYKHILDKAFTSWKSKPMLSITRDRVAKYHEKLGNEHGEAYANLA 169

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--------------DMQQF 182
           +  +R LF +A  Q        L ++ P ++    R W +                    
Sbjct: 170 MRILRALFNFAAGQYEDNSGHSLFIDNPVKRLSQTRAWYRIERRKTYIKSHELAAWYAGL 229

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +   ++  +  L    L     + + + +     L+   F+I   K     T+ L D   
Sbjct: 230 QQIQNDTLRDYLLLILLTGLRRQEAATLKWSDLDLKAKSFTINKTKNNESHTLPLSDFLY 289

Query: 243 KL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
            L +A        +         +  +           +GV+ + H +R+   TI+    
Sbjct: 290 DLMIARQEKAINGYIFPGPGAAGHIIEPRKTMAHVIKNSGVHFTVHDLRRTFITIAESLD 349

Query: 302 ATAHELMATYGWK-TVDQAETYTKGADRIRL 331
             A+ L      K + D    Y    D  RL
Sbjct: 350 IPAYALKRLMNHKMSNDVTAGYI-IVDVERL 379


>gi|282857147|ref|ZP_06266392.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
 gi|282585016|gb|EFB90339.1| site-specific recombinase XerD [Pyramidobacter piscolens W5455]
          Length = 318

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 75/295 (25%), Gaps = 17/295 (5%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T++      +         A  +   +     Q            +  +       S++ 
Sbjct: 16  TSIDEAAQSFLTCKTAAKAAPKTCKEYAKTIRQFFAAFPQAWSSPLKMRTAFLSWLSQEV 75

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRKTEGIRPWTKEDMQQFK 183
            P++    L  +R  ++W V +      P           P R  +      KE +    
Sbjct: 76  APATYNLQLIYVRAFWRWCVEERIQPPEPDPFRGLKRRSAPGRFRDIDAAKVKELLALPD 135

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPD 239
                G +      F L +  R  ++ +        +  ++              + L  
Sbjct: 136 RSTWAGLRDYALILFTLDTAARPGEALQLLPADFNFSSLAVVIPAHAAKTREERIIPLSP 195

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-------GVNKSAHGVRKF 292
                L      +   +        + T      +    +        G     + +R  
Sbjct: 196 TTAAALRHVIQRRPREWDAEMYVFASVTGRRFAVERWNDRLKGYRLKDGTTFKPYDLRHA 255

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
           + T+   AG +   L    G       + Y    AD +R     S  +  +V + 
Sbjct: 256 ACTLHLRAGMSGEVLQRLMGHHGPQMTQRYIHLTADDLRKEQALSSPVGRLVPAR 310


>gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302]
 gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735]
 gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302]
 gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735]
          Length = 414

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 80/285 (28%), Gaps = 29/285 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  +  +       +     D     I    I        R  ++ R     +  ++
Sbjct: 121 KSRAEGTYQNLLYSDKLLTEFVKDKGMTDIVIATITEDLFEEYRFYLKRRGLATVTMNRY 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV Q  +  N   + +  K + +    +      +   +    E  Q R 
Sbjct: 181 LCWLSRLMYRAVSQRLIRYNSFENAKYEKTEQKIRFLQKSDVAKLMALRVIDKEAEQARR 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  +D       H+Q       +  K ++   +  +       + +     
Sbjct: 241 LFVFACFTGLAIADMEHLQFGHVQTAADGQKYIRKERQKTKVEFIVPLHPIAEAIINQCK 300

Query: 251 GKETFFINN-----------DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            ++                      + +  +          G+ +    H  R    T+S
Sbjct: 301 KEQPSMKEMQTVKEKDNDLVFHCTCSRSVMNAKLSIVGKACGIRERLSYHMARHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDMDRLIRK 403


>gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1]
          Length = 454

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 92/372 (24%), Gaps = 70/372 (18%)

Query: 16  TRHGKIIY----YFRKGHGRR--------IRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           T+ GK       Y   G  ++        IR       +F+   + A          + S
Sbjct: 10  TKRGKYYAVLNLYDHTGKRKQKWVSTGYEIRGNKKAAKSFLDELLVAYNKKQQAALKVIS 69

Query: 64  PRKKPTTLKW------------LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSG 107
             K P                  I E+   +    L   +   +               G
Sbjct: 70  KMKHPEQFIKEQSRIMALPLFLYIEEWIDHSSVK-LQPTTIDGYRQLCGGRIRTFFESRG 128

Query: 108 D--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +D          + +  +    +S  ++   +   + + ++ +Y+  NPC   +RPK
Sbjct: 129 TTVYDLTGEDLNEFYAYLAKQGLKGASQQRYHGLIHSAYSFLMKHQYIDSNPCDFADRPK 188

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
            +      +  +         ++ S+  +      Y GLR S+       ++     +I+
Sbjct: 189 AEKY-RGAYYNQSELTELFRAAKESEIYIPVLLAAYYGLRRSEVLGIKWSNIDFGNGTIR 247

Query: 226 TQKTGTI----------------------------------ITVELPDGFMKLLAMTPIG 251
                                                      ++L     + L      
Sbjct: 248 IAHKVVEQKVDGKYRTVGHDKMKTESSNRILPLMKEVAMALRRLKLHQDEQRRLCGNSYV 307

Query: 252 KETFFINNDKQKM---NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307
            E        +          +  F     + G+     H +R   A++    G    E+
Sbjct: 308 HEYDDYVCVNEIGQLLRPNYVTAKFSELLKENGLKHIRYHDLRHSCASLLLANGVPMKEI 367

Query: 308 MATYGWKTVDQA 319
               G       
Sbjct: 368 QEWLGHSNYRTT 379


>gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             T    AG     +    G   V   + YT   
Sbjct: 130 FTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|307611444|emb|CBX01112.1| hypothetical protein LPW_28111 [Legionella pneumophila 130b]
          Length = 412

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 114/359 (31%), Gaps = 26/359 (7%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           TP   L  F+ + +  +G+  ++   GH   + L       FI           PK +  
Sbjct: 33  TPKG-LKTFLYRYKI-NGQ-RHFITIGHYPAMSLSEAK-KRFIDLSDIRHGEVNPKEQIA 88

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +K+ +T+K LI  +  +      A      ++     II   G+     + T+ I  
Sbjct: 89  EQKQKEQSTVKNLILHWYTNYIEKHRAQ-PLQIWQHIKVDIIPLLGNKKLENLKTREITQ 147

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGI 171
            ++    + +P  A + L++++  F +AV +          +       +E+P+ +   +
Sbjct: 148 ALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLTL 207

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----- 226
                              Q R A + +L +G+R  +   A                   
Sbjct: 208 DEVKTLWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVARWSEFDFENSLWTIPAENT 267

Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
                  I   E+    ++ L      +      + +  ++            ++ G+  
Sbjct: 268 KTNIVMRIHLTEMTKKVLRELQAHSDSEYVITGADGQSILSDRAMPRAVIRIQSRVGIPH 327

Query: 284 KSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
            +AH +R+  AT            +    G K      TY K     + +  ++    +
Sbjct: 328 WTAHDLRRTFATQLGQTLNVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEQWTSL 386


>gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
 gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC
           29176]
          Length = 375

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 106/363 (29%), Gaps = 59/363 (16%)

Query: 33  IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92
            ++  P  S    A  S         +     R+   TL     +Y ++    + +  +R
Sbjct: 10  KKISSPDSSEVFDASPSKTYHEQAYIDQTLRLREILKTLPAFTKDYFRAVEPTT-SARTR 68

Query: 93  ISFESYFDQIIRKSGDF---------------DYRKITTKHIRSGVESRK---------- 127
           IS+            +                D  ++    I    E  K          
Sbjct: 69  ISYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLKVYKNEEDRQI 128

Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +T     + ++++R  + +  +++ ++ NP L V+ PK   + I     +++     + 
Sbjct: 129 TNTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAMLLDYV 188

Query: 187 SEGS----------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKT 229
             G                 +       LL +G+R S+     VQ +         T+K 
Sbjct: 189 EHGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIKVTRKG 248

Query: 230 GTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKAT 278
           G  + V   +     L                 +   F++  +++M         K  A 
Sbjct: 249 GNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMVKKYAR 308

Query: 279 KA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-ADRIRLGIK 334
           +       + H +R    T         + +    G K V+   + Y     +R R    
Sbjct: 309 EVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDENRRRRAAG 368

Query: 335 NSR 337
             +
Sbjct: 369 AVK 371


>gi|161614526|ref|YP_001588491.1| hypothetical protein SPAB_02275 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168822346|ref|ZP_02834346.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|161363890|gb|ABX67658.1| hypothetical protein SPAB_02275 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205341262|gb|EDZ28026.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|267993018|gb|ACY87903.1| prophage lambda integrase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
          Length = 380

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 105/357 (29%), Gaps = 48/357 (13%)

Query: 9   PFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----- 62
           P +  +  +  GKI + ++     R       E         A T    +R         
Sbjct: 13  PNLYCKLDKRTGKIYWQYKHPVSGRFHSLGTDEVEAKKVASEANTIIAEQRTRQVLSVND 72

Query: 63  -----SPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
                  R+   T+   I +Y +          L  NS               G    + 
Sbjct: 73  RLARMKGRRTDITVTEWIDKYIEIQDERLKHRELRPNSYRQKAKPVRLFREHCGMQYLKD 132

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA------INPCLSVERPKRK 167
           I+   I    ++ K       +    +R++     ++           NP L+ ++P+ +
Sbjct: 133 ISALDISEITDAVKAEGH--NRMAQVVRMVLIDVFKEAQHNGHVPPGYNPALATKQPRNR 190

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   +E    +++   +    +      + +G R  D C    + + +++  ++ +
Sbjct: 191 VTRQRLSLEEWKTIYEAAEKQEPYLQCGMLLAIITGQRLGDICNMKFKDIWDDMLHVEQE 250

Query: 228 KTGTI----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           KTG+                   V        +       + T    N   +++ +  + 
Sbjct: 251 KTGSRLAIPLDLKCEALGLTLRDVVSKCRDAVISKYLVHFRHTTSQANRGDQVSTSSLTS 310

Query: 272 WFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            FK    ++G+        + H  R  S  +  + G          G K+    + Y
Sbjct: 311 TFKKARDRSGLKWDKGSPPTFHEQRSLSERLYREQGVDT---QKLLGHKSRKMTDKY 364


>gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX]
 gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX]
          Length = 303

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 82/278 (29%), Gaps = 23/278 (8%)

Query: 72  KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRK 127
             +++E+ +        + ++  ++ +    ++    D        +    +R  + +  
Sbjct: 11  ARILAEFDRHLRVERGCSPHTVRAYLTDVRSLLDYLADTGAGGLEDLDLATLRGWLGTLH 70

Query: 128 HTPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +S                +  R   +A +P L +  P+R         ++   +  +
Sbjct: 71  DAGASRATMARRTAAARVFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARVCA 130

Query: 185 FWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237
              +G       +     E L  + +R ++ C   +  +     +++   K G    V +
Sbjct: 131 AARDGEESPLVLRRSAVVEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERVVPI 190

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---------IWFKAKATKAGVNKSAHG 288
               +  +          +      +                      AT A      HG
Sbjct: 191 GVPALDAVDRWLRDGRPQWATAHSGRALFLGARGGRLGERTARRDVYAATAAVARTGPHG 250

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R  +AT   + GA    +    G  ++   + YT  +
Sbjct: 251 LRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVS 288


>gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19]
 gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19]
          Length = 410

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 84/316 (26%), Gaps = 31/316 (9%)

Query: 42  TFIPAYMSALTG-----STPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRI 93
                Y   +       +   ++       K  TL  L  ++          S A  +  
Sbjct: 75  EVNRRYQELMQTDGYVTAAKLKDAYLGIGVKQETLLKLFEQHNAEFAKKVGHSRAQGTFT 134

Query: 94  SFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143
            + +  + I           D   +++    I          +K   ++   ++  ++ +
Sbjct: 135 RYRTVCNHIREFLPHTYKREDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKHI 194

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLL 200
              A     +  NP         ++      T+ ++Q       + +     R  F F +
Sbjct: 195 VSIARNDGRLPFNPFAGYIN-SPESVDRGYLTQTEIQTLMDAPMKNATHELVRDLFVFSV 253

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           ++GL  SD        LQ          T         +  ++LL +     E +     
Sbjct: 254 FTGLAYSDVKNLTADRLQTFFDGNLWIIT--RRKKTNTESNIRLLDVPKRIMEKYKGLAR 311

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA------HGVRKFSATI-SADAGATAHELMATYGW 313
              +     +        + G   S       H  R  +AT      G     +    G 
Sbjct: 312 DGHVFPVPSNGSCNKILKEIGRQCSFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGH 371

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K   + 
Sbjct: 372 TNIKTTQIYAKITAQK 387


>gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302]
 gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735]
 gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302]
 gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 86/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +  +S  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDMLIKE-KESHIGIDIKRDSMSAYHSTRKRLQEFIQKKYHVSDLAFSQLTENFIYELQA 172

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  S+  +    ++ + + A R+          V   +   +  +   +E + 
Sbjct: 173 FCLSELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDQEALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K    +         R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKVLRFDELEEEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDNGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E  + +  +     +    +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRIKLLPEAVRLIEKMYGDEREALLPFIKYPTYQSCLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 390


>gi|2618957|gb|AAC48886.1| integrase [Phage 21]
 gi|2618963|gb|AAC48890.1| integrase [Phage 21]
          Length = 356

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 96/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYISIQEDRLQHNELKPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F+S        +      L +G R  D C      + +++  I  +KTG+        
Sbjct: 179 AIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPLSL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEPGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|88706900|ref|ZP_01104599.1| phage integrase family [Congregibacter litoralis KT71]
 gi|88698822|gb|EAQ95942.1| phage integrase family [Congregibacter litoralis KT71]
          Length = 399

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 104/332 (31%), Gaps = 29/332 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHW 84
           +   R + L    E     A    + G +P RE      +     T      ++ +    
Sbjct: 54  RYGKRGVTLSEARER-LSEAKKMIVAGKSPAREKARDKTRVKDAETFGAWAEKWMRGYQ- 111

Query: 85  GSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141
             +A ++R   +S +++ + ++ G+    +IT + +R+  ++      P++A+     + 
Sbjct: 112 --MADSTRDMRKSVYNRELKKRFGNQKLSEITHEDLRAVTDAIVERGAPATAVHAREVVM 169

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAF 196
            +++WA+ +     NP   V          R       +    +          Q R A 
Sbjct: 170 QVYRWAIERGQKVENPAELVRPTSIARFEPRDRALSPPEIGLMYRYMDRVGTSPQYRAAI 229

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254
           + LL + +R S+   A    +  +       ++        L     + L +    K   
Sbjct: 230 KLLLLTMVRKSELSNATWSEISFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFA 289

Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAG 301
                      +    M+A   +         A            H +R+ ++T+  +AG
Sbjct: 290 GGSEFVLPSRYDSDLPMSAATMNRVLALTYQAAQKNDEPLGKFGPHDLRRTASTLLHEAG 349

Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
                +      +       Y K   R +   
Sbjct: 350 YNTDWIEKCLAHEQKGVRAIYNKAEYREQRAA 381


>gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0027]
          Length = 389

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 107/372 (28%), Gaps = 51/372 (13%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           +   +  +GKI     K    + +            ++  L           +P      
Sbjct: 17  IVSYKDSNGKIR-QKWKDTKLKKKGNKKRAEKIRDEFLLELESQLAMECECANP---DLL 72

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKS--GDFDYRKITTKHIRSGVESR- 126
               +  Y + +    +A N+ + ++ Y  ++I +          ++   H++   +   
Sbjct: 73  FYDYLLNYLEVSK-KQVAFNTYVGYKHYVHNRIYKFFYPKKIKLNRLKPYHLQDFYQYML 131

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T ++ I +   +    + AV  E ++ N    V +PK+K    + + + ++ +   
Sbjct: 132 NDDCTANTVIHYHAFISKALQEAVITELISTNVADKVRKPKKKQFVSQVYNQHEILKLLD 191

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232
             SE  +  L      + GLR S+        +      I                    
Sbjct: 192 ILSEE-KLYLVVLLTAFYGLRRSEVLGLKWSAIDFLNKKIMINHVIIENPENMSQLIKKD 250

Query: 233 --------ITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNATQ 268
                    T+ L +   + L      ++                  F   D + M    
Sbjct: 251 QTKNSSSYRTLPLVETIERALVNQAKWQQDNRILLGEDYILKDSEYVFTMEDGRLMKPQY 310

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK-G 325
            +        K G+ K   H +R  +A+I  D+G     +    G  +       YT   
Sbjct: 311 VTHRLSKLIKKNGLKKIRFHDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLT 370

Query: 326 ADRIRLGIKNSR 337
           A       +   
Sbjct: 371 AGVKERAAEALE 382


>gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 387

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
           L  LI E ++      +  ++  ++ S    +           D  + +++   I    +
Sbjct: 109 LDRLIRE-KEEHVGIDIKKDTLSNYHSTRSNLCTFIEEKYKVEDLAFSQLSENFIYDFRD 167

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE--- 177
               +     SS     + ++ + + A R+         + +  +   +  +   +    
Sbjct: 168 FFLGTLGFQESSFYGAASQIKTVCRLAYREGLADTLLFANAKIVRGDKKLPKALDRCSLD 227

Query: 178 --DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                QF+    E    R  F F  ++G    D       HL  +       K       
Sbjct: 228 KLMKIQFEELEEEMETARDLFVFACHTGAAYCDLMELSRLHLVRDDEGSLWLKFN--RQK 285

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E +  +  +    +M    +  + KA   + G+    + H  R
Sbjct: 286 TGVLCRIKLLPEAIRIIEKYKSDERESLLPQMKYATYQSYLKALRLRIGIAFPFTTHTAR 345

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 346 HTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 385


>gi|261227213|ref|ZP_05941494.1| putative integrase of prophage CP-933C [Escherichia coli O157:H7
           str. FRIK2000]
          Length = 384

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 20  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 78

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 79  LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 137

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 138 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 197

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 198 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 257

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +       S + +    +    + S H +R+   
Sbjct: 258 RPIPEAILPFITQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 317

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 318 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 359


>gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism]
          Length = 306

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               V    G+  +     + ++ +     +  ++        K    +AG+    S H 
Sbjct: 210 KYRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHT 269

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   AT   + G     +    G   V     YT  
Sbjct: 270 FRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 306


>gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
 gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM
           14469]
          Length = 306

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 10/256 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  + +S      +  +   +          +G                   ++  +S  
Sbjct: 36  LRMFEQSMRRDEKSDATVRKYLHDLLAFREYTGGGCPVTKEVVIAYKQYLMGRYAVASVN 95

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++   FK     + V  +  +  +         R  T+E+  +  S   E    RL
Sbjct: 96  SMLAALNCFFKEYGWYDCVVKSLKVQRKS---FRRSDRELTREEYYRLISTAWEKGNVRL 152

Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPI 250
               + +  +G+R S+     V+ L++   ++  +    ++    EL     K +    I
Sbjct: 153 SLIMQTICSTGIRVSELEFITVEALRSRRATVSLKGKTRVVLLPAELCRILRKYVKEHNI 212

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHEL 307
            +   F++   + ++ +      KA    AGV       H +R   A    D       L
Sbjct: 213 SEGCIFVSRSGKPLDRSNIFHDMKALCETAGVNPEKVFPHNLRHLFAITYYDVEKDISHL 272

Query: 308 MATYGWKTVDQAETYT 323
               G  ++D    YT
Sbjct: 273 ADILGHASIDTTRIYT 288


>gi|126735712|ref|ZP_01751457.1| phage integrase [Roseobacter sp. CCS2]
 gi|126714899|gb|EBA11765.1| phage integrase [Roseobacter sp. CCS2]
          Length = 262

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 60/242 (24%), Gaps = 18/242 (7%)

Query: 111 YRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              +T   + +    +    + ++  + L  +    K         +      +   ++ 
Sbjct: 7   LHTLTNADVIAYVARDRSTCSNATVNRRLQMLGRALKHMSDFYEAKVPQLDLRKAETKEP 66

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                    D Q+        ++      F L +G R +         +      I    
Sbjct: 67  RERVRELSMDEQERLF-EHLPTEFHPFVSFALMTGARIATISGLMWNDVDLKNREITFHM 125

Query: 229 TGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            G  + +   +  +  L                    +  +      + N   F + ++A
Sbjct: 126 KGDDMMLFPINSELAALLSALPSSNLMRYRNHVFTRIDKVYNERVAIEPNGGTFGVAWRA 185

Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
               A + N   H  R    T    A      +    G K +     Y     D +R  +
Sbjct: 186 ALKSAEISNFRFHDCRHTFCTRMLRATGNMKLVSQLAGHKDIATTSRYAHVLVDDMRAAL 245

Query: 334 KN 335
             
Sbjct: 246 DG 247


>gi|261258781|ref|ZP_05951314.1| putative integrase of prophage CP-933C [Escherichia coli O157:H7
           str. FRIK966]
          Length = 385

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 21  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 79

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 80  LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 138

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 139 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 198

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 199 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 258

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +       S + +    +    + S H +R+   
Sbjct: 259 RPIPEAILPFITQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 318

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 319 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 360


>gi|26249046|ref|NP_755086.1| hypothetical protein c3204 [Escherichia coli CFT073]
 gi|26109453|gb|AAN81656.1|AE016765_58 Hypothetical protein c3204 [Escherichia coli CFT073]
          Length = 390

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 29/285 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+K  + EY +      L+ ++   ++      +         ++T   +++ ++S
Sbjct: 87  AASKTVKMYLDEYLEICETRKLSPSTIGGYKK-CRSALASLHICPASELTPATLKAWIQS 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K T  +    L+ +R     AV    + INP   V   + +++     +   +      
Sbjct: 146 QKTTLKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPA 205

Query: 186 WSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
             +         Q    F F +++GLR S+ C      +     +   Q           
Sbjct: 206 EVDALLAAAGNKQWENLFRFAIHTGLRSSELCALRWHDIDFVGKTAHVQSASVVGVIKGT 265

Query: 232 -----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-------IWFKAKATK 279
                   VEL +  M  L               +       ++         +     K
Sbjct: 266 KTKAGTRKVELTEEAMLALINQKPFTFMKDATVFEDPKTNKPWTSADAIRKKAWVPTLRK 325

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           AG+     +  R   AT     GA    L A  G K  +     Y
Sbjct: 326 AGIRYRNPYQTRHTFATRHISRGANLFWLAAQMGHKGPEMLFRHY 370


>gi|328947984|ref|YP_004365321.1| integrase family protein [Treponema succinifaciens DSM 2489]
 gi|328448308|gb|AEB14024.1| integrase family protein [Treponema succinifaciens DSM 2489]
          Length = 273

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 71/255 (27%), Gaps = 14/255 (5%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           + +     +L+ N+  S+            DF    +       G       P +    +
Sbjct: 11  FEQHLRKQNLSENTVTSYLWTIKYYTENYEDFSKENLLA---YKGWLLEYFKPKTVNLRI 67

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++     +  + +       +  +              +         ++G+       
Sbjct: 68  QAINKYLAFTGKDKMQLKQVKVQQKNFLENVIS----NADYQYFKAQLKADGNIEWYFVV 123

Query: 198 FLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKE 253
           + L  +G R S+  +  V+H+    F + ++              +     L        
Sbjct: 124 WFLGATGARVSELTQIKVEHVNIGWFDLYSKGGKLRRLYIPKLLREEAQAWLKSIDRTFG 183

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMAT 310
             F+N   +++     +   K  A K G++      H  R   A    +       L   
Sbjct: 184 YVFLNRFGERITTRGIATQLKTYAAKYGISTKVVYPHSFRHRYAKNFLEKFNDISLLADL 243

Query: 311 YGWKTVDQAETYTKG 325
            G ++++    Y + 
Sbjct: 244 MGHESIETTRIYLRR 258


>gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
 gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 406

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 75/302 (24%), Gaps = 18/302 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
             AY++A       +   +             + + K       ++ +        + + 
Sbjct: 86  REAYVTAEMVRNAYQGVGSEYETLIKAFDKDCANFLKRVG-KDRSIGTYKVMVRARNYVA 144

Query: 104 RKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153
                     D    ++T   I+                +      ++ +   A     +
Sbjct: 145 AFIKSFYRRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLI 204

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSC 210
             NP           +     T++++++  +   +       R  F F  ++ L   D  
Sbjct: 205 PRNPFAQF-HISPNVKEREYLTEDEIKRIMAHEFDNPTLALVRDLFIFACFTALSFVDMK 263

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF 269
                 +                 V      + + L +    K          K+N    
Sbjct: 264 ELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVFGKINYWTM 323

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K    + G+ K  S H  R    T++   G     +    G   +   + Y K   
Sbjct: 324 CKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITT 383

Query: 328 RI 329
           + 
Sbjct: 384 QK 385


>gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12]
          Length = 345

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +S+I  L +
Sbjct: 71  KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRLKN 130

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 131 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 189

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   + +  +      
Sbjct: 190 IFGVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 249

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 250 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 309

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 310 LGHADTSITKHYARVLDQ 327


>gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 404

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 79/250 (31%), Gaps = 16/250 (6%)

Query: 96  ESYFDQIIR---KSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV 148
            ++    I+   K  D  + ++T + I    +          S+     T ++ + + A 
Sbjct: 136 RTHLQNFIKSRYKVSDLAFSQLTEQFIYDFQQYFMGICGFQESTFYNAATHLKTVCRLAY 195

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSG 203
           R+    I     V+  K   +  +   +  + +  +        E    R  F F  ++G
Sbjct: 196 REGLADILLFDKVKVSKGDKKLPKALDRCSLDKLMNIQFGELEEEMETARDLFVFACHTG 255

Query: 204 LRCSDSCR-AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
               D    + +  ++++  S+  +       V      +          ++        
Sbjct: 256 AAYCDLMELSRLHLVRDDEGSLWLKFNRQKTGVLCRIKLLPEAIRIIEKYKSDERERLLP 315

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA 319
           +M    +  + KA   +AG+    + H  R   AT+   + G     +    G   V   
Sbjct: 316 QMKYATYQSYLKALRLRAGIAFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMT 375

Query: 320 ETYTKGADRI 329
           E Y K   + 
Sbjct: 376 ERYAKVTPQK 385


>gi|145639937|ref|ZP_01795536.1| prophage DLP12 integrase [Haemophilus influenzae PittII]
 gi|145270903|gb|EDK10821.1| prophage DLP12 integrase [Haemophilus influenzae PittII]
          Length = 304

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 19/272 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-- 122
           +K P   +  +  + + A           +   +        G +    IT + I +   
Sbjct: 6   KKPPKLFEEALLLFVEDAKLKK----DFDTNRRHAIYWRSVFGGWKLSDITGEDIMTNLP 61

Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +  +PS+  ++ TS+  +   A +  ++   P +       + +    W  ++
Sbjct: 62  TYSTTHKKPLSPSTKNRYRTSILRVLSLAYKNGWIDRIPYVKK---FVEPKVRVRWITKE 118

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
                      +  +    F L++G R ++        +                     
Sbjct: 119 QATTLISNLNLAWMKNVCSFALFTGARMTEILSMTWDKVDFERSIAIVSNDVAKSGKARA 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVN-KSAHGVRKF 292
           + L +  + LL      + + F+ +        +     F     K+ ++    H +R  
Sbjct: 179 LPLNNTALDLLQKLYQTRRSEFVFHRGTDKQIGRIDWHDFHQALEKSNIHNFRFHDLRHT 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+    AG   + L    GW+T++  + Y  
Sbjct: 239 WASWHVQAGTPLYTLKEMGGWETLEMVKKYAH 270


>gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.6 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  +  T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVRQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|330817934|ref|YP_004361639.1| phage integrase [Burkholderia gladioli BSR3]
 gi|327370327|gb|AEA61683.1| phage integrase [Burkholderia gladioli BSR3]
          Length = 385

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 95/341 (27%), Gaps = 43/341 (12%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +  +     +             A+   + G   K +   +  ++  T+  L+  YR +
Sbjct: 24  RWRAQVRRRGQSIAKTFRTKGAAEAWAREIEGGIDKGQ--AAVDEQTITVGELVRLYRNA 81

Query: 82  A--HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQF 136
                  +A  S   +     ++     D    K++TK +    + RK   +   +    
Sbjct: 82  RNDSGRPVAERSNEDY--MLKRLESHFDDEVAAKLSTKRLVKFAQERKKEGAGQYTIDMD 139

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERP------------KRKTEGIRPWTKEDMQQFKS 184
           ++ +  ++K       + +    S+ RP             R     R    +  Q F  
Sbjct: 140 ISKLGTVYKHMASLLDLRLPHAPSIARPTLDHLQLIGPGKHRDRRPTREEIIKIFQWFAE 199

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                          + S  R  +  R     L         +        +  + ++ L
Sbjct: 200 HPEREQAVPDVIRVAMNSAFRRGELFRLTWSDLDVERRLALVRDRKHPRQKKGNNEWVPL 259

Query: 245 L---------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
           +                                 N    + + +  S +FK    + G+ 
Sbjct: 260 IGDSLEVLLRQPRYPVPPTYEAKRKADPTVEPHPNEYIFRFSKSTASKYFKQACDEKGIV 319

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           +   H +R  +A+   +AG    E+ A  G K       YT
Sbjct: 320 DLHLHDLRHEAASALFEAGWQIPEVAAVTGHKDWRNLRRYT 360


>gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5]
          Length = 268

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 12/259 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  +      G++A N+  ++     +   +  + + R +    +       K  P +  
Sbjct: 3   IENFETYLRQGNMAENTIAAYRYAVKEYYSRHKELNKRNL---LVYKTYLIEKFKPKTVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + +M     +  +      +  +              +      + K    E  +   
Sbjct: 60  LRIQAMNKYLDYMNKSRLRLKSVKVQQRSYLENVISNADY---AFLKNKLKKEENQEWYF 116

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              FL  +G R S+  +  V+H+Q   F I T+                  + L  T   
Sbjct: 117 VVRFLAATGARVSELIQMKVEHVQIGYFDIYTKGGKIRRIYIPKSLRKEATEWLNSTNRT 176

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   +++     +   K  ATK G+N+     H  R   A    +       L 
Sbjct: 177 SGYLFLNRFGERITTRGIAQQLKNYATKYGLNEKVVYPHSFRHRFAKNFLEKFNDISLLA 236

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y + + 
Sbjct: 237 DLMGHESIETTRIYLRRSS 255


>gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium]
          Length = 161

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +        +       +  ++        +  A  A ++K  + H +R   AT 
Sbjct: 73  WHWQYVFPAARRSVDPRSKLERRHHVSDQSVQRAVRQAARDAKLHKPVTPHVLRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
              AG     +    G K V     YT  
Sbjct: 133 LLQAGYDIRTVQELLGHKDVQTTMIYTHV 161


>gi|315038292|ref|YP_004031860.1| bacteriophage integrase [Lactobacillus amylovorus GRL 1112]
 gi|312276425|gb|ADQ59065.1| bacteriophage integrase [Lactobacillus amylovorus GRL 1112]
          Length = 383

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 107/369 (28%), Gaps = 47/369 (12%)

Query: 11  VTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---- 64
           + K + + GK+ Y F+   G                 +Y  A    T  +    S     
Sbjct: 9   IYKYKLKSGKVKYGFKTYIGTDPETGKAVKPSRQGFDSYKEAEAAKTKLKSEGPSKFTHK 68

Query: 65  ---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIR 120
              +    T++ +   + K      +  ++ I+  + + + + ++ GD     +   HI+
Sbjct: 69  QKMKADRKTVQQVYDRWLKVYEA-DVRGSTYINTTNLWKRNLQKEFGDNYIDSLNVDHIQ 127

Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +    +  +  L ++A+ +++ + +P      PK+  +  +   K   +
Sbjct: 128 RFATELAENQLTYFLSVNLLHRLVRYAMMRDWCSKDPFDKFIMPKKSKKKSKRPKKNYYE 187

Query: 181 QFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIF------------ 222
             +      S     + +  Y       G R S++     + +  +              
Sbjct: 188 LDELKAFLNSIKHYNYMYYAYFMTLGNLGTRPSEALALQWKDIDFDNKLVYITKTVSTDK 247

Query: 223 -----SIKTQKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQ 268
                   T+   ++ T+++ +   + L                      +         
Sbjct: 248 DGKKTIGPTKTPQSVRTLKMSNNLFQALQDYKKQTVFTKQDDFLFHKRDGDFCYPQAPDD 307

Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH--ELMATYGWKTVDQA-ETYTKG 325
           +               + HG R   AT+     +     ++    G   V  A   YT  
Sbjct: 308 WIYVIYNHDKTLR-RITPHGFRHTLATLLYQGDSRIKPQDVQLLLGHSKVTTALNIYTHV 366

Query: 326 ADRIRLGIK 334
            +  +  I+
Sbjct: 367 TNESKKTIE 375


>gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/336 (7%), Positives = 78/336 (23%), Gaps = 49/336 (14%)

Query: 40  ESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESY 98
               +  Y+  L        +     +        ++ +  +       + N+  ++  +
Sbjct: 73  AERAVRLYLECLDTEEELELWDREEAEAIGAEWDVVVRKLCECIQTRQYSTNTLRTYVMW 132

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVA 154
             +            +  ++  S             S+  Q  +++  LF+  +++ +  
Sbjct: 133 VRRFQDYLKGKAVVAVDAENAASFFTYLACEKRVVASTQNQAFSALLFLFRHVLKRRFEG 192

Query: 155 INPCLSVERPKRKTEG---------IRPWTKEDMQQFKSFWSEGSQP------RLAFEFL 199
               +   R K                  T       +  +  G +       R+     
Sbjct: 193 FEGVVRARRTKYIPVVLSRAEVDAVFEQLTHPFDLATRLMYGCGLRLFEVVNVRVGSLNF 252

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---------------- 243
               L   D      + +      ++  +             ++                
Sbjct: 253 GAGILTVHDGKGRKDRTVPLPRCLMQDLERQVRRVRIQLGRDIEGGFDGVFMPGSMDRKG 312

Query: 244 -----LLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 L    +                +   +  +     +  A + G+    +AH  R
Sbjct: 313 GSLAKELPWQWLFPYRKLTLVRGTEERRRYHAHEKKLGAAIREAARRVGLAKRVTAHTFR 372

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+   +A      +    G  +++    YT   
Sbjct: 373 HSFASHLLEANYDIRTIQELLGHSSLETTMIYTHTV 408


>gi|218779203|ref|YP_002430521.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760587|gb|ACL03053.1| integrase family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 417

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/377 (11%), Positives = 103/377 (27%), Gaps = 52/377 (13%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V  ++ +      Y  +G  R+ R           A  +A   +             P 
Sbjct: 24  NVRCDKDK--IWRVYVNRGDQRKNRTMGAGREGLASAIKAAEKIAKELSGIPTPSALPPP 81

Query: 70  T----LKWLISEYRKSAHWGSL-AVNSRISFESYFD-QIIR--KSGDFDYRKITTKHIRS 121
                      ++ K+    +   + +   +E      I+      +    KI  + I +
Sbjct: 82  NHCPDFTSYAKDWLKAGKDNNKWKIYTWERYEQLLRIHILPSPVFKNRAMDKIQRQEITT 141

Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKED 178
            +E+     +P++     + +  +   A+   ++  NP   + +                
Sbjct: 142 FLENMGENRSPATVEAAHSVIHSILDKAMHNGHIDSNPAHRLLKYILPAKNERDQKEPAP 201

Query: 179 MQQFKSFWSEGSQPRLAFE-------FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
            +  +      +  ++           ++++GLR  ++     + L     S    +T  
Sbjct: 202 FKIKERDRFLETAEKMCNRSEVMILKMMVHAGLRLGETLAMKEEGLDLERGSYHITETFK 261

Query: 232 I------------ITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQK 263
                          V+LPD  ++ L    I                          +  
Sbjct: 262 RDSFSKPKTKKSRRKVDLPDFLVEDLKRHVIMLRRESLERGKGGDISLLFPDPATLLECP 321

Query: 264 MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321
            +  +     K    KA +     H +R   ATI  +A  +   +    G  ++    + 
Sbjct: 322 YSQKKIQGLMKKVCRKAKLRMRNPHDLRHTYATIMLEAHQSPAYVQRQMGHSSIQITVDI 381

Query: 322 YTKGA--DRIRLGIKNS 336
           Y   A     R   +  
Sbjct: 382 YGHLAPGAGKRQLDEAL 398


>gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium]
          Length = 171

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 5/127 (3%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           +       G   +       +  K+               L+M P        +    + 
Sbjct: 45  QHEQDLEEGFGSVYLPEALARKYKSAEREWCWQYVFPSTRLSMDPREVHRQDADATTLRR 104

Query: 265 NATQ---FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +        +  K     +G+    S H  R   AT   + G     +    G K V   
Sbjct: 105 HHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTT 164

Query: 320 ETYTKGA 326
             YT   
Sbjct: 165 MIYTHVL 171


>gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51]
 gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 466

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 114/363 (31%), Gaps = 55/363 (15%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+RIR     +S         L     K++   S +   T +   I  +       ++ 
Sbjct: 50  TGKRIRPTIYDDSEVG--VQKKLRKLLIKKDLGKSVKPNKTLVGEWIRIWLDIYSKPNVG 107

Query: 89  VNSRISF-ESYFDQII-RKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQF 136
           + +   +  ++ + I            +TT  ++     +            +       
Sbjct: 108 IGTWDGYDLNFTNHIENSFIARKTMSGLTTDDLQVYYNMKLLNGRKDGKGGLSTRFVKAI 167

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            T +   F  AV   ++  NP   V    ++   I+ W KE M  +     +  +   AF
Sbjct: 168 HTVISSAFDQAVTSGHLEKNPASGVRISNKRRPKIKIWNKEQMALYLKAIKKD-RLYAAF 226

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------------TIITVELPD 239
                SGLR S+        +  +    K ++                   +  T+    
Sbjct: 227 VTDSKSGLRKSELLALRWSDIDFSTGLTKIERGWVRSPKGTLYLSDLKSENSERTLVFST 286

Query: 240 GFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284
             +K+L      ++                F   D   +N + F+        KA + + 
Sbjct: 287 DLLKVLLEHKSRQDEEKKTAGKNYIDNGLVFCREDGSYINPSTFTRRHYDLTAKAKLPRI 346

Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
           S H +R   +T   ++G     ++    G K +      YT   +R++      ++ S +
Sbjct: 347 SVHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDVLERMK------QKTSEL 400

Query: 343 VDS 345
           +D+
Sbjct: 401 IDN 403


>gi|326569172|gb|EGE19234.1| phage integrase [Moraxella catarrhalis BC1]
          Length = 411

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 102/366 (27%), Gaps = 35/366 (9%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + +   GK  +    G G    +        +    + L     +   I +P     T K
Sbjct: 49  RYKDSKGKWRW---HGLGAYPAVTGAMARKLVQEKFADLALGLDELTAIPAP-PTAQTFK 104

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            +  E+        L   ++  + S     I    G      I+ +   +     + TP+
Sbjct: 105 SVALEWYNEPSIQKLDDGTKSKYLSLLEKHIFPIMGKKAIGDISRQVWLTFFRKLQETPN 164

Query: 132 ---------SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180
                    +A + L     ++++A  ++        L     + +    +       Q 
Sbjct: 165 PQTGKPIIETANRALQVCSRIYRFALTQELAGVEFNPLEHLHERLEKHEPKQLAHVSEQD 224

Query: 181 ------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                   K+  SE ++  +     L+                   I+ I   +      
Sbjct: 225 LHKLLLDIKTIPSEITRLGVQLLSHLFLRPNEVLDGEWAEIDFNKGIWEIPAHRMKKRRP 284

Query: 235 VELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290
             +P  +  + LL                +  +       F+    + G +  ++ HG R
Sbjct: 285 HVVPLSEQALALLQQLHSLTGFDTHLFPSRAKDRKNAHQRFRMALNRLGYHDTQTLHGFR 344

Query: 291 KFSATISA----DAG--ATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISS 341
             ++T       + G       +      K    A  Y K     DR  +    S  +  
Sbjct: 345 HVASTKLNNYTDENGKKFDGRVIEFALAHKVQGVAGVYNKAEYLHDRKIINQWYSDWLDG 404

Query: 342 VVDSDD 347
           +V ++D
Sbjct: 405 LVKAND 410


>gi|307244434|ref|ZP_07526544.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492191|gb|EFM64234.1| site-specific recombinase, phage integrase family
           [Peptostreptococcus stomatis DSM 17678]
          Length = 350

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 15/303 (4%)

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
             A+       E       K  T + +  ++  + H+  ++ ++   +++ + +I     
Sbjct: 52  KEAIMALAHYNESPYDISAKTLTFEEIYDKW-SNIHFEKISNSNITGYKAAY-RICEPIK 109

Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---- 163
           D  + +I    +++ V+       +  +    + +++ +AV  + V +     V      
Sbjct: 110 DMIFSEIRLDQLQNLVDKSGKNTPTLKKIKIMLGLMYDYAVIHDIVPVEKREKVRYLDIS 169

Query: 164 -PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
            P       R               +          +LYSG+R  +        +  +  
Sbjct: 170 KPGNPNSYTRTKFSSAQINKVWSAKDDDIYYSVVLMMLYSGVRIGELLEVKKSDVHLDEQ 229

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKA 277
                K+ T+  +       K+L                            +   +KA  
Sbjct: 230 WFFIAKSKTMAGIREVPIADKVLPFFEYWMGRDGEYLISTPEGDSMTYDRFYRTHWKALM 289

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNS 336
           +   +  + H  R  + +    AG     +    G    D  E  YTK    ++L  +  
Sbjct: 290 SYLDIKHTPHCTRYTTISSLTQAGVDDRIIKQIVGHSGKDVTEIVYTKIDMDVKL--EAI 347

Query: 337 RRI 339
            RI
Sbjct: 348 NRI 350


>gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
 gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492]
          Length = 421

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 25/289 (8%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVESRKH- 128
            E  K    G  ++++   +      +           D   ++++   I +     +  
Sbjct: 118 DEMEKQYKAGMKSLSTFTKYRIGCAYVGEFLQSHYRVKDIALKELSLPFITNYETFLRID 177

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                +SA+ F+ ++R +   A+  E++  +P    E    +T      TKE++      
Sbjct: 178 KQLKINSAMVFVRNLRAMIFRAIDNEWLVKDPFRRYEYKNEETT-REILTKEEIHLLMET 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R  + F  ++GL   D      ++++      +             +  +
Sbjct: 237 PITRKHMGLVRDLYLFCCFTGLAFIDLYNLKEENIKTFFDDGEWIVIH--RQKTGTEADI 294

Query: 243 KLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
           KLL       E         ++             K    K G+    S H  R   AT 
Sbjct: 295 KLLDYPKQIMEKHRGLCKDGRVFPVPPYRSCLRSLKRLGKKCGITKPLSWHVSRHSFATS 354

Query: 297 -SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
                G     + +  G K +   + Y K   + +L      ++S  ++
Sbjct: 355 VCLSNGVPIETVSSMLGHKDIKTTQVYAKIT-KEKLSKD-VEKLSQQLN 401


>gi|4490372|emb|CAB38562.1| integrase [Corynephage 304L]
          Length = 395

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/372 (10%), Positives = 92/372 (24%), Gaps = 55/372 (14%)

Query: 16  TRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            +  K  +   +R   G+         +        A      +R     P    TTL  
Sbjct: 14  DKGQKPRWLGRYRDHAGKEH--AKNFATEKEAKAWVAEQERALRRNEWIDPVDAATTLGQ 71

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129
           +   +   A        +  + ++    +     D     I +  I +  +         
Sbjct: 72  VAQSWMDEAT----REETISARKTLIRNLGP-LEDMPVSVIKSSDILAWRKKLLTGRDWL 126

Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
                   ++A      M VL +    +  +A+      +     +   +    E+  Q 
Sbjct: 127 DGSTLSEATTANTVGQLMSVLKRAQYDRMILAVPIVRVPKSAPSSSISRQDILTEEQIQH 186

Query: 183 KSFWSEGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---- 230
            +      +        L         SGLR S+ C    + +     +I   +      
Sbjct: 187 IANSVATPKGHYKALPWLKSMIRVAAGSGLRVSEICALRPEDINFLRHTITVSRQMGRGG 246

Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDK--------QKMNATQFSIWF 273
                    +  T+ +       +                        +  + +  +   
Sbjct: 247 KPAPLKSKASSRTIPVSRWVTAEIVQWIKDNPVGESGWIWTRPVGKSGRPFDRSAVTHGL 306

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA----D 327
                   +   + H  R F A+    AG   + + +  G  +     +TY        D
Sbjct: 307 LPAIKAHNLRPHTFHDYRHFYASALIGAGVPVNAVQSAMGHASASITLDTYVHLFPGQED 366

Query: 328 RIRLGIKNSRRI 339
            +R  +     +
Sbjct: 367 LVRGALDGLDVL 378


>gi|291444654|ref|ZP_06584044.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291444673|ref|ZP_06584063.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347601|gb|EFE74505.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
 gi|291347620|gb|EFE74524.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 91/299 (30%), Gaps = 44/299 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------------FDYRKITTK 117
           + +S    +L+ N+   + +          D                     D   I  +
Sbjct: 5   WIRSLRSRNLSDNTIRIYSTAAAAFAEFLLDPENGYRPAVDQDGTPGRPAPADLDDIHRE 64

Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           H+ + + +  R+ + S+A     S++ +F W V +E +  +P  +++ P      +    
Sbjct: 65  HVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTLPEVEVPVIP 124

Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTG 230
             D+ +             +       LL +G+R S+     V  L  ++       K G
Sbjct: 125 DADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLKVLHVLGKGG 184

Query: 231 TIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
               V   +     L                       +   N  Q++         K +
Sbjct: 185 KTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTIWGVGTMLKRR 244

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLG 332
             +AG+     H  R   A      G    +LM   GWK+      Y   A  +R R+ 
Sbjct: 245 CAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAASAGTERARMA 303


>gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33]
 gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101]
 gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33]
 gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33]
 gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236]
 gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101]
          Length = 319

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +   +   K        +  ++ T  +   ++   ++GV  + +AH  R   AT 
Sbjct: 217 FKWQFIFPSSVRCKHPVDGYVCRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQ 276

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
              AG     +    G   +   + YT    +
Sbjct: 277 LLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQ 308


>gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601]
 gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
 gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601]
          Length = 334

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 37/301 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122
           L+    E+       S ++++  S+   +  ++R   + +           ++   +R+ 
Sbjct: 11  LRAFFQEWLA--EQRSASIHTIKSYRDTWRMLLRFVAERNGGGVARITLADVSASEVRAF 68

Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPKRKTEGI 171
                  RK T  +    L ++R  F +   ++   I  C          +         
Sbjct: 69  LTHAEHGRKGTIGTRNCRLAAIRSFFSFVADKDPEYIAQCAEVLTIPLKRKPTAAPCYLE 128

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
               +  + Q      EG +  +    L  SG R  ++       ++           K 
Sbjct: 129 PGEVEAILAQPDRSTIEGMRDHVLLSLLYNSGARIQEALDLCPGAIRFEAPYYVRLYGKG 188

Query: 230 GTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                  L    + L+            E  F+N   + + A+       A    A    
Sbjct: 189 RKERICPLWPETVALMKKLLERQPRAPDERIFVNRYGEPLGASGVRFKLAAYVAAAAKTT 248

Query: 283 ------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335
                 + + H  R  +A     AG     + +  G  ++D    Y +   +  R  ++ 
Sbjct: 249 PSLRLKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308

Query: 336 S 336
            
Sbjct: 309 V 309


>gi|61806413|ref|YP_214190.1| phage-related integrase [Prochlorococcus phage P-SSP7]
 gi|61374338|gb|AAX44192.1| phage-related integrase [Prochlorococcus phage P-SSP7]
 gi|265525451|gb|ACY76217.1| conserved hypothetical protein [Prochlorococcus phage P-SSP7]
          Length = 290

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 25/263 (9%)

Query: 87  LAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRV 142
            +  +  ++           G  F   KIT   I    +  K       +  + L+S++ 
Sbjct: 27  KSAITYANY------FTEFRGLGFPVEKITIPLIDELKQHLKTDGRANATINRCLSSIKT 80

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-- 200
           +         +        +  + K + I     E      +      +  LA       
Sbjct: 81  VLNHCKDHGLIFFEIPKWKKLKENKYQRIHFTKDEVEAIVTAAVEVHGRQDLADIINFAA 140

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTPIGKE 253
           Y+G+R  +  +     +      I                 V +      +L        
Sbjct: 141 YTGMRQGEILKLSASRVDFLQNCIHVGARREDTTKTGTYRAVPIHSSLKHMLVDRTQNAG 200

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVRKFSATISADAGATAHEL 307
              +       +  Q    FK    +  +N         H +R    T    AG     L
Sbjct: 201 ARDLVFGYDWKDKDQLLRAFKKVINRYPINLASEDGYCFHSLRHSFGTWHFAAGTKPRNL 260

Query: 308 MATYGWKTVDQAETYTKGADRIR 330
           M   G   +     Y    D  +
Sbjct: 261 MEMMGHANIATTLGYGHATDEGK 283


>gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHLLQAGRDIRTVQELLGHTDVKPTQIYTHVL 163


>gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)]
          Length = 290

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293
                +  L     +  +       +  MN T      +  A +AG+ K+   H +R   
Sbjct: 191 PYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSF 250

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           AT   + GA    +    G   V     YT   DR
Sbjct: 251 ATHLLEVGADIRTVQEQLGHTDVKTTTNYTHVLDR 285


>gi|312195374|ref|YP_004015435.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226710|gb|ADP79565.1| integrase family protein [Frankia sp. EuI1c]
          Length = 304

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 94/271 (34%), Gaps = 19/271 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           L  L+ ++R+     + +  +  S+    ES+   +  +        I  +H+ + + S 
Sbjct: 12  LTTLLPDWRRHLRALNRSPATIQSYLTVGESFVGYLTEQGMPRSAGAIAREHVEAYLVSL 71

Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
             + + ++  +   S++ LF+W V    ++  P   +  P    + +     + +++   
Sbjct: 72  SERVSAATVAKHYRSLQQLFRWLVEDGEISRTPFERMSAPAVPEQPVPILGDDVLRKLLD 131

Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
                  E  +        L +G+R  +     V  L  +         G          
Sbjct: 132 ACKGNSFENRRDAAIIRLFLDTGVRIGELVGLSVDDLDFDHDVAHVMGKGRRGRAVPYGN 191

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291
            T +    +++  A     K        K  M ++  S   + +A  AGV K  AH  R 
Sbjct: 192 RTADALRRYIRARARHGQAKSPALWLGKKGPMTSSGISQMLERRAADAGVPKLHAHQFRH 251

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322
             A     AG    +LM   GW++ +    Y
Sbjct: 252 TFAHAWLAAGHQEQDLMRLAGWRSREMVGRY 282


>gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
 gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2]
          Length = 328

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 87/303 (28%), Gaps = 49/303 (16%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114
           +     R    T+      Y+        +  +   +  +    +        DF   ++
Sbjct: 15  QRKKRNRDSKKTI---FEIYK--------SEKTVKDYMFHLKDFLHFVYDGENDFSISEV 63

Query: 115 TT-----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
                         +I    E RK   +S    L++++ L+K             + + +
Sbjct: 64  IPLMQDIEKEDVEAYIVHLFEDRKLKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFK 123

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH--- 216
             R  E +   + +D+++    +   S    +       L Y+G+R  +      +H   
Sbjct: 124 VNRNIENVLKVSIDDIRKIIGLYKIDSEKKYRNITILYTLFYTGMRSKELLTLKFKHYLK 183

Query: 217 ---------LQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-------PIGKETFFINND 260
                    +Q        +     +  +L +    L++M                   D
Sbjct: 184 REDEYFFKLIQTKSGKDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLD 243

Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++    +   +      G + S H +R   AT  + +GA   E+    G       E
Sbjct: 244 NTPLSYRSLNAIIQDMGKMIGKDISPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTE 303

Query: 321 TYT 323
            Y 
Sbjct: 304 VYI 306


>gi|218700365|ref|YP_002407994.1| integrase of prophage [Escherichia coli IAI39]
 gi|218370351|emb|CAR18154.1| integrase of prophage [Escherichia coli IAI39]
          Length = 416

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 101/342 (29%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 52  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 110

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 111 LKPVTVGDALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 169

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 170 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 229

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 230 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 289

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 290 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 349

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+ +D G   H +    G +       Y      D  R  + 
Sbjct: 350 TMLSDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 391


>gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208]
          Length = 309

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 79/291 (27%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKH 118
            + ++K  T      E+      G++   +   +   E    +++      D  + T + 
Sbjct: 2   KAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPDLKIKDLDRYTYQQ 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWT 175
           + +         ++          +          +       +  + P+ K        
Sbjct: 62  LLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQN 219
           +      +    E          ++ +GLR S+                S      +   
Sbjct: 122 EVQALLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMV 181

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 T+   +   +++        +     K++      K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCEN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|306815648|ref|ZP_07449797.1| putative phage integrase [Escherichia coli NC101]
 gi|305851310|gb|EFM51765.1| putative phage integrase [Escherichia coli NC101]
          Length = 352

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 85/312 (27%), Gaps = 55/312 (17%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS 121
           S +    T   L+ EY  S    +L  ++  S+       +   G+      +T + I+ 
Sbjct: 3   SKKAGKLTWDELLDEYFFS---RNLRPDTEWSYRKVVRGFVDFMGEGVFPADVTQRDIQR 59

Query: 122 GVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----------NPCLSVERPKR 166
                   +  +  +    +  +R +F + +++  +                   +   +
Sbjct: 60  WRRQVLKTQSLSTYTWNNKVAHLRAIFGFGIKKGLLPQTENPLCEASVAKEAKKKKTLNK 119

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-----------YSGLRCSDSCRAGVQ 215
                     +   ++++        R    +             Y+G+R +      ++
Sbjct: 120 DQMIQVYLVVQKFAEYETQQRVPCDRRRNALYPARYWLTVLDVLRYTGMRFNQLQHIRLK 179

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA------------------------MTPIG 251
            ++     I+ Q  G+    E     +  L                              
Sbjct: 180 DVRPGEGVIELQLEGSKTHREWCVPIVAPLKAPLELLLSRARRLGAGPDDFLFDVCRFTD 239

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMAT 310
                               +F+  + + G   SAH  R   ATI  ++     H + + 
Sbjct: 240 CIEPDDYVYCPVRAHQAVKGFFRRLSRECGFLVSAHRFRHTLATILMESPERNMHLVKSM 299

Query: 311 YGWKTVDQAETY 322
            G +++     Y
Sbjct: 300 LGHQSIATTMEY 311


>gi|296169804|ref|ZP_06851418.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895481|gb|EFG75181.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 422

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 94/364 (25%), Gaps = 51/364 (14%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           +  +    +      R         T   A+++             +P     T+  +  
Sbjct: 46  KGKRWRARY-VDDTGREYTKLFGRKTDAEAWLANDIVPALATGTHVAPSAGRVTVAQVYR 104

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---S 132
            +  +     ++  +  S  S +  ++  + GD     + T  +R+ V +         +
Sbjct: 105 SWVATQGH--VSPKTAASRRSAWRSRVEPQWGDAAVVDVRTGAVRAWVAAMVTDGVGVPT 162

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                  +R +   AV    +  NPC  ++ PKRK       T   +    +      + 
Sbjct: 163 IENAYGLLRQVLGAAVEDRRIPRNPCEGIKLPKRKHADRGYLTHAQVGALAAAVDRNPE- 221

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------IKTQKTGTIITVELP 238
                FL Y+GLR  +     V                           KT    +V  P
Sbjct: 222 --VIRFLAYTGLRWGEMAALRVCDFDMLRRRVNVSRSVTESGGLVWSAPKTWERRSVPFP 279

Query: 239 DGFMKLLAMTP-------------------IGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 LA                             +     +      +     +   
Sbjct: 280 AALAPELAALMVGKGREDSVFTDQRGGVLRNSNYRARVFEPAVRAVQAAAAAQRAREVAT 339

Query: 280 AG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331
           AG          + H +R  +A+++  AGA    +    G        + Y    D    
Sbjct: 340 AGQAATPEFPTITPHDLRHTAASLAVSAGANVKAVQRMLGHAKASMTLDVYADLFDEDLD 399

Query: 332 GIKN 335
            +  
Sbjct: 400 AVAA 403


>gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 406

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 75/302 (24%), Gaps = 18/302 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
             AY++A       +   +             + + K       ++ +        + + 
Sbjct: 86  REAYVTAEMVRNAYQGVGSEYETLIKAFDKDCANFLKRVG-KDRSIGTYKVMVRARNYVA 144

Query: 104 RKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153
                     D    ++T   I+                +      ++ +   A     +
Sbjct: 145 AFIKSFYRRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLI 204

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSC 210
             NP           +     T++++++  +   +       R  F F  ++ L   D  
Sbjct: 205 PRNPFAQF-HISPNVKEREYLTEDEIKRIMAHEFDNPTLALVRDLFIFACFTALSFVDMK 263

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF 269
                 +                 V      + + L +    K          K+N    
Sbjct: 264 ELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQIIERYKYLSEDKLVFGKINYWTM 323

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K    + G+ K  S H  R    T++   G     +    G   +   + Y K   
Sbjct: 324 CKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITT 383

Query: 328 RI 329
           + 
Sbjct: 384 QK 385


>gi|331675580|ref|ZP_08376327.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
 gi|331680979|ref|ZP_08381616.1| site-specific recombinase, phage integrase family [Escherichia coli
           H299]
 gi|331067188|gb|EGI38596.1| site-specific recombinase, phage integrase family [Escherichia coli
           TA280]
 gi|331081200|gb|EGI52361.1| site-specific recombinase, phage integrase family [Escherichia coli
           H299]
          Length = 365

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 79/283 (27%), Gaps = 28/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
               I ++      G  + N+   +      +           D ++ +++        E
Sbjct: 127 FDEHIEKFELMVERGMRSDNTLRHWRKLKRHVTAFIKFQYKASDLNFSELSGLFAEELYE 186

Query: 125 SRK-HTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               H P      SA + +   R + K  V+++++  NP    +      E I    ++ 
Sbjct: 187 YLTLHKPKPLAEVSARKDVKWTRQIVKIGVKKDFITRNPMEGFKCSGGDVEVIPLEFEQV 246

Query: 179 MQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            +  +         + R AF F  ++G    D        +       +           
Sbjct: 247 ERIHRKKLHVERLVEVRDAFIFQCFTGFAYQDIYGLTRDSITLVGPKRERWLVRKRGKTQ 306

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------- 282
               V +     +L+            +      +  +++ + K  A    +        
Sbjct: 307 VGEMVPILPIVEELIQKYKSHPYCVAHDKLIPVNSNFRYNTYLKELADICDIRDITGSIR 366

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H  R F A +  + G    ++    G + +     Y + 
Sbjct: 367 KLDTHDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCRV 409


>gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
 gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM
           17241]
          Length = 305

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 67/255 (26%), Gaps = 7/255 (2%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L+ ++         + ++   +      + R        K            R +  +S 
Sbjct: 34  LLRQFAAYLRDQEKSCSTIAQYNRGLAALHRFLQGAPVTK-HALIAWKEHLMRHYAAASV 92

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++     +        + P         + E      +       +  S   +  
Sbjct: 93  NAMLAAVNGFLSFCG-WSDCRVKPLKIQRELFCREEQELSREEYLRLVRAAVQSGNERLS 151

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTPIG 251
           L  + +  +G+R S+      + ++     ++ +     I +           LA     
Sbjct: 152 LVLQTICSTGIRVSELLFITAEAVRGGRAVVRCKGKTRYILLPERLRRALSAYLAKQKRA 211

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               FI    + ++ +      KA   +AGV       H +R   A            L 
Sbjct: 212 AGPVFITRTGKPLDRSNIWRDMKALCKRAGVKAGKVFPHNLRHLFARTFYSLEKDLSRLA 271

Query: 309 ATYGWKTVDQAETYT 323
              G   V     YT
Sbjct: 272 DILGHTNVATTRIYT 286


>gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
 gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella
           melaninogenica ATCC 25845]
          Length = 267

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 80/267 (29%), Gaps = 16/267 (5%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +  +++      L+ N+  ++    +       +  Y     +++      +  +  P +
Sbjct: 2   VKSFKQQLKKEELSDNTITAYLYAVEDF-----ERKYSCFNRENLLLYKADQIEQFKPKT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++    ++  +         L +++       I     + ++       E    
Sbjct: 57  VNLRIQALNKYLEFIGK--PRLRLKSLKIQQKTYLENVISNADYQYLKSKLKEGEEEVWY 114

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTP 249
            L       +G R S+  +  V+H++   F I T+                    L    
Sbjct: 115 FLVRFLGA-TGARVSELIQFKVEHVRVGYFDIYTKGGKVRRIFIPQDLCMETKAWLKRAN 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306
           I     F++   +++         +  A + G+N      H  R   A    ++      
Sbjct: 174 IDLGYLFLDKHGKQITPRAIRHKLQRFAHQWGINSKVMHPHSFRHRYAKNFLESFNDVVL 233

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGI 333
           L    G ++++    Y +     +  I
Sbjct: 234 LADLMGHESIETTRIYLRRTSNEQQAI 260


>gi|62195116|ref|YP_220445.1| hypothetical protein pMR2_03 [Micromonospora rosaria]
 gi|61106478|gb|AAX39003.1| Int [Micromonospora rosaria]
          Length = 377

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 100/344 (29%), Gaps = 31/344 (9%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G G R   P+  ++            +   R      R    T         + +    +
Sbjct: 26  GGGPRQNAPHTFKTKTDAHRWLTRVEADISRGTWLDDRAAGETFGNYARAILRDSPKIGV 85

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLF 144
               R + E      +        R++T   +R             +S  Q    +R++ 
Sbjct: 86  --RWRETCERNLRLHLVPLVTVPLREVTASRVREWHAAALRGSGGRTSISQSYRFLRMVM 143

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             AVR+  +A +PC        +       T   +           + R A     + GL
Sbjct: 144 NTAVREGIIARSPCQIPGAGTVRAAERPVATPAQVVALVEA--INPRYRTAVLIAAWCGL 201

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI----------------------ITVELPDGFM 242
           R  +     V  +     +I  +K                                   +
Sbjct: 202 RRGEIAGLRVADVDLTEHTITVRKARVEPLHDRGKAFDKDPKSEAGKRTIAIPPHVVPVI 261

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301
           +L      GK+  F++ D   +        F     K G++  + H +R    T++A  G
Sbjct: 262 RLHLDEFAGKDRLFVSRDGSPLRGDTLYQAFVRARGKVGLDTLTFHDLRHTGQTLAAQTG 321

Query: 302 ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
           AT  +LM   G  ++  A  Y    D R R   K    +++  D
Sbjct: 322 ATLADLMKRLGHSSMAAARRYLHAVDGRDREIAKALSELAAHGD 365


>gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   + +  +       +     T      K    KA +NK  S H +R   AT 
Sbjct: 74  WAWQYIFPSSRLSVDPRSGKIHRHHEFETNLQRTVKKALEKARINKAGSCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVKTTMIYTHVL 163


>gi|22296542|ref|NP_680502.1| integrase [Lactobacillus phage A2]
 gi|6599311|emb|CAB63657.1| integrase [Lactobacillus phage A2]
          Length = 385

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/373 (10%), Positives = 85/373 (22%), Gaps = 60/373 (16%)

Query: 11  VTKERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V K   R  K     Y ++     + +  +        A  +    ST     I+     
Sbjct: 3   VFKRANRKSKPWGFQYSYKVDGISKQKTSFYKTRKEAKAAEAKYLASTGGSVKIDPV--- 59

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T      ++  +    S++  +   + +    I     D     +T    +  + +  
Sbjct: 60  -ITFADWYDKWLHTYKIRSVSELTMTKYATSGTIIRNYFKDLKLIDLTRMIYQQFINNYI 118

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV----------AINPCLSVERPKRKTEGIRPWTKE 177
                      S++ L   A +                          R  +       +
Sbjct: 119 DDGYGHKHARQSVQKLHSHAHQAIMAAADEGLIRRDYAAHAELGGTAGRSEDTKFLEADQ 178

Query: 178 DMQQFKSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
             +         +  R+A   +   +YSG R  +      + +     +I   KT     
Sbjct: 179 FEKLRDYVDQFANPQRIALMMVQTAIYSGARLGEIGGLTWEDIDEKKSTISIDKTFKYRF 238

Query: 235 VELPDGF------------------------------------MKLLAMTPIGKETFFIN 258
           V                                             +          F+ 
Sbjct: 239 VIRNADGSWPDREKVFGPTKTPSSVRTIKVSPVLIASLHKLILADRIKAINNPYHLLFLG 298

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKT 315
                + +   +   +      G+ +     HG+R    +     G     +    G + 
Sbjct: 299 PTGLPIYSNGVNKELRRALKHLGIERPGFGFHGLRHTHGSYLLYKGLDIQYVSHRLGHEN 358

Query: 316 VD-QAETYTKGAD 327
           V    + YT   D
Sbjct: 359 VGITTKIYTHLLD 371


>gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 312

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 74/281 (26%), Gaps = 16/281 (5%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITT 116
           +  I     K  T      E+  S    +L   +   +++    I +        R IT 
Sbjct: 2   KRKIIEVSTKGITFDRGYDEFIFSCRARNLRPATIQFYDNSMRSIYKFIDPKMPIRDITK 61

Query: 117 K----HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTE 169
                 I            +   +L +++ +  + +R  Y+           +       
Sbjct: 62  ATVDNFIIGCQTELDIKDITIHTYLRALKAILYYFMRSGYMEKFHIPLIKYDKPVIETYS 121

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
                                +  +    L  +G+R S+     ++ +      I  + T
Sbjct: 122 DEEVKLLLKKPNKNKCNFIEFRNWVICNVLYATGIRSSNLINLQIKDIDLCNNLISMKTT 181

Query: 230 GTI------ITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV 282
                    IT  L     + LA+    +E + F +    K++    +   +       V
Sbjct: 182 KNRKPLVIPITKSLQPILREYLAIRKGNEEDYLFCSAYGDKISKVALNGSMRTYNNGRRV 241

Query: 283 NKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            ++  H  R   A            L        +D    Y
Sbjct: 242 KRTGIHRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNY 282


>gi|257432416|ref|ZP_05608779.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283295|gb|EEV13427.1| integrase [Staphylococcus aureus subsp. aureus E1410]
 gi|283469561|emb|CAQ48772.1| integrase [Staphylococcus aureus subsp. aureus ST398]
          Length = 401

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/398 (10%), Positives = 114/398 (28%), Gaps = 69/398 (17%)

Query: 13  KERTRHG--KIIYYFRKGH-----GRRIR--LPYPHESTFIPAYMSALTGSTPKREYINS 63
           K + ++   K  YY +         +R+   L    + +   A          K    +S
Sbjct: 5   KFKNKNNETKYRYYEKYKDPYTDKWKRVSVVLNKNTKQSQKEAMFRLEDKIKEKLNNQSS 64

Query: 64  PRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRS 121
              K  T   L+ E+ +         V +  + ++    I + S  +    KI TK++++
Sbjct: 65  SILKTLTFHTLLDEWFEYHTKTSGFKVTTLDNLKTRIKNIKKNSSQNLLLNKIDTKYMQT 124

Query: 122 GVESRK--HTPSSAIQFLTSMR-------VLFKWAVRQEYVAINPCLSVERP-------- 164
            +      ++ +   + L  M+         + +       ++      +          
Sbjct: 125 FINELSNIYSENQVKRQLGHMKEAIKYAVKFYNYPNEHILNSVTLPKKSKTIEDIEKEEA 184

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCR--------- 211
           K           +      +  +   + R+    A E    +G+R  +            
Sbjct: 185 KMYNYLEMEQVIQIRDFILNDNNMQYRARILVAGAVEVQALTGMRIGELLALQVKDVDLK 244

Query: 212 ----------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--- 258
                       ++          T+  G+   + +      +L    +  +        
Sbjct: 245 NKTIDINGTIHRIKCNAGFGHKDTTKTAGSRRKIAINSRIANVLKKIMLENKKMQQWEPS 304

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306
                          M  ++ +    + A    +NK  + H +R    ++ A+   +   
Sbjct: 305 YVDRGFIFTTCQGNPMQGSRINKRLSSAAESLNINKKVTTHTLRHTHISLLAEMNISLKA 364

Query: 307 LMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343
           +M   G        + YT   +  ++  +  +++  +V
Sbjct: 365 IMKRVGHTDEKTTIKVYTHVTE--KMDRELEQKLEKLV 400


>gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287
                      +  + A      +       +  M    F   FK    +AG+ K  + H
Sbjct: 61  WKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPH 120

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R   AT    +G     +    G   V     YT  
Sbjct: 121 TLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRVFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254994439|ref|ZP_05276629.1| bacteriophage integrase [Listeria monocytogenes FSL J2-064]
          Length = 286

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 79/282 (28%), Gaps = 23/282 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKH 118
            + ++K  T      E+      G++   +   +   E    +++ +    D  + T + 
Sbjct: 2   KAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQQ 61

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWT 175
           + +         ++          +          +       +  + P+ K        
Sbjct: 62  LLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQN 219
           +  +   +    E          ++ +GLR S+                S      +   
Sbjct: 122 EVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKMV 181

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                 T+   +   +++        +     K++      K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           A +   + H +R   A++   AG +   +    G  ++   +
Sbjct: 242 ANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283


>gi|211731867|gb|ACJ10162.1| integrase [Bacteriophage APSE-4]
          Length = 357

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 95/338 (28%), Gaps = 55/338 (16%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112
                            T       + +          S    +      +        +
Sbjct: 8   RKAELWRIAKLDDFPNVTFDEACLRWIEEKANKK----SLDDDKGRLGFWLLYFSGTRLK 63

Query: 113 KITTKHI---------RSGVESRKHTPSSAIQ--------------------FLTSMRVL 143
            IT   I         R      K   +SA +                     L  ++ +
Sbjct: 64  DITEAKIYSAISKMKNRQEQLRWKSRVNSAKRKGIEIPAYQAKEVSIATKAKHLALLKSM 123

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
            + +  +++  I     ++ P  + + IR    ++ ++  +   E    R   EF L +G
Sbjct: 124 MR-SAERDWKWIEKSPVIKVPSAREKRIRWLEPDEAERLINECPE--PLRSTVEFALATG 180

Query: 204 LRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           LR S+        +           +  K+G  I V L D   + L       + +   +
Sbjct: 181 LRRSNIINLAWSQIDMQRKVAWIEPENSKSGKAIGVALNDTACRTLTRQLGNHQKWVFVH 240

Query: 260 DKQKMNATQFSI------------WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306
                 +                  ++A   +AG+     H +R   A+    +G     
Sbjct: 241 TMSAKRSDGSQTNSIRKMRVDSNTAWRAALKRAGIENFRFHDLRHTWASWLIQSGVPLSV 300

Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           L    GW++V+    Y   A       +++++I  V D
Sbjct: 301 LQEMGGWESVEMVRRYAHLASNH--LTEHAKQIDGVFD 336


>gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis]
          Length = 410

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 98/357 (27%), Gaps = 40/357 (11%)

Query: 4   SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTG-----ST 55
            + +PP +   K     GK +        +RI L            Y   +       + 
Sbjct: 40  KMDVPPRLWDVKNSRASGKSV------EAQRINLAVDKIRVEVNRRYQELMQTDGYVTAA 93

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------ 106
             ++       K  TL  L  ++          S A  +   + +  + I          
Sbjct: 94  KLKDAYLGIGIKQETLLKLFEQHNAEFEKKVGHSRAQGTFTRYRTVCNHIREFLPHTYKR 153

Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
            D   +++    I          +K   ++   ++  ++ +   A     +  NP     
Sbjct: 154 EDILLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKHIVSIARNDGRLPFNPFAGYI 213

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQN 219
               +       T+ ++Q   +   + +     R  F F +++GL  SD        LQ 
Sbjct: 214 N-SPENVDRGYLTQTEIQTLMNAPMKNATHELVRDLFVFSVFTGLAYSDVKNLTTDRLQT 272

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FINNDKQKMNATQFSIWFKA 275
                    T         +  ++LL +     E +       +     +    +   K 
Sbjct: 273 FFDGNLWIIT--RRKKTNTESNIRLLDVPKRIIEKYKGLARDGHVFPVPSNGSCNKILKD 330

Query: 276 KATKAGVNKSA--HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              + G       H  R  +AT      G     +    G   +   + Y K   + 
Sbjct: 331 IGRQCGFKVRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 387


>gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
                +  +        +       +  ++ +      +  AT+ G+  + + H  R   
Sbjct: 71  NWEWYWQYIFPSEKHSVDPRSKVVRRHHLDESGLQKAVRRAATEVGITKHVTPHIFRHCF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   +AG     +    G K V   + YT   
Sbjct: 131 ATHLLEAGYDIRTVQELLGHKDVKTTQIYTHVL 163


>gi|317505564|ref|ZP_07963475.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
 gi|315663312|gb|EFV03068.1| phage integrase family site-specific recombinase [Prevotella
           salivae DSM 15606]
          Length = 268

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 80/265 (30%), Gaps = 12/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I  +      G+++ N+  ++     +   ++ + + R +    +       K  P +  
Sbjct: 3   IENFEMYLRRGNMSENTIAAYLYAVKEYYSRNKELNKRNL---LVYKTYLIEKFKPKTVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++     +  +      +  +              +      + K    E  +   
Sbjct: 60  LRIQAINKYLDYMGKSRLRLKSVKVQQRSYLENVISNADY---IFLKNKLRKEENQEWYF 116

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMTPIG 251
              FL  +G R S+  +  V+H+Q   F I T+                  + L      
Sbjct: 117 VVRFLAATGARVSELIQIKVEHVQIGYFDIYTKGGKIRRIYIPKSLSIEANEWLGKVNRM 176

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   +++     +   K  A K G+N+     H  R   A    +       L 
Sbjct: 177 TGYLFLNRFGERITTRGIAQQLKNYAAKYGLNEKVVYPHSFRHRFAKNFLEKFNDISLLA 236

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G ++++    Y +     +  I
Sbjct: 237 DLMGHESIETTRIYLRRTASEQQAI 261


>gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
 gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           1_1_14]
          Length = 285

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 20  VTKFKNHLAKTNLAKNTVTSYVWTVQYFLCHYG-----EVNKKNLLAYKGYLVENFKPQT 74

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 75  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKTDGYDE---W 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H+Q     + ++           +      K L    
Sbjct: 132 YFIVWFMAATGARVSELLHIKAEHVQIGHLDLYSKGGKIRRLYIPKNLRTEAAKWLKEIG 191

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 192 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 251

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 252 LADLMGHESIETTRIYLRR 270


>gi|229138846|ref|ZP_04267426.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
 gi|228644577|gb|EEL00829.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus BDRD-ST26]
          Length = 322

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 74/290 (25%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + +   +T K IR+     +  
Sbjct: 24  LVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHEHFENKNLIDLTRKDIRNLSIVFQEM 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 84  GMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREITFITEDQINWLI 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T +         +L  
Sbjct: 144 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 200

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------------------- 285
              + K        + K       +       +  +NKS                     
Sbjct: 201 NHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERRRLNKSVFNYWCGIFAKMLNEKEGKDF 260

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H  R          G    +L +      +   E+Y K      + 
Sbjct: 261 KMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 310


>gi|212710101|ref|ZP_03318229.1| hypothetical protein PROVALCAL_01154 [Providencia alcalifaciens DSM
           30120]
 gi|212687308|gb|EEB46836.1| hypothetical protein PROVALCAL_01154 [Providencia alcalifaciens DSM
           30120]
          Length = 393

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 78/278 (28%), Gaps = 29/278 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             + EY       +L+ ++   +E   + +      F    +T   +++ ++ +     +
Sbjct: 96  DYLEEYLVICETRNLSPSTIKGYEKCKNALSD-LHQFHVSSLTPAILKNWIQKQTTVLKT 154

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCL-------SVERPKRKTEGIRPWTKEDMQQFKSF 185
               L+ +R     A+    ++INP           +    ++  I              
Sbjct: 155 IRNQLSFLRSSLDEAITDGVISINPVSLVSASRYQSKNSGAESSYIVDPLSPKEVSALLA 214

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------II 233
            ++  Q +  F+F + +GLR S+ C      +     +   Q                  
Sbjct: 215 ATKYEQWKNLFQFAINTGLRSSELCALRWSDIDFIENTAHVQSASVVGVIKKTKTKAGTR 274

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS- 285
            VEL    M  L               +       +          +     KAG+    
Sbjct: 275 KVELNSEAMNALNEQKQFTFMKDCVIFEDPKTNKAWAGADAIRKKAWVPTLKKAGIRYRN 334

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +  R   AT     GA    L    G K  +     Y
Sbjct: 335 PYQTRHTFATRHISQGANLFWLAGQMGHKGPEMLFRHY 372


>gi|204931052|ref|ZP_03221878.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204320096|gb|EDZ05301.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 359

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 100/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP ++T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRYLT-YRKASKSFFWR-NPVTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       SL+VN+     +    +  K G+    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 VTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVETTRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +         LA +  L +G R  D        + +    +   KTG 
Sbjct: 179 RLQLETYNATRTAAEHLPVWFSLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAFPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +G        + H +R   A                 G  + +  + Y    D  
Sbjct: 299 KISGAKFSDNPPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354


>gi|167582763|ref|ZP_02375637.1| Integrase or site-specific recombinase [Burkholderia thailandensis
           TXDOH]
          Length = 409

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/370 (9%), Positives = 98/370 (26%), Gaps = 31/370 (8%)

Query: 9   PFVTKERTRHGKIIYYFRK----GHGRRIRLPY------PHESTFIPAYMSALTGSTPKR 58
             +  E    G   + +R          + +                 Y   +       
Sbjct: 29  GGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSLTMARERARRYAEIVASGVSPV 88

Query: 59  EYINSPRKKPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
                 R    +L  +   + Y         +     + +   ++ I    G      +T
Sbjct: 89  ADARKDRGAVKSLDTVREFAAYWIEQQMAGKSEEYLRTTKRALEKDIYPAIGGKSVSDVT 148

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGI 171
              + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++       +    
Sbjct: 149 PGDVLAICDRIKKRGAPKMALSARNVLKRMYEYAIARQLVTANPAQAIVARFVATQDSRD 208

Query: 172 RPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
           R  + +++             R   LA   L+ + +R S+   A       +    +   
Sbjct: 209 RVLSPDEIGHVLRAVYASGIRRPLKLAVHLLVLTMVRKSELIEARWDEFDLDASIWRIPA 268

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV- 282
           +              + +AM     ++   +      +                    + 
Sbjct: 269 ERMKKDREHWVYLAPQAVAMLRELHDSRMSHQYVFPSSRGADRPIAKSTLNQAVRALDME 328

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSR 337
             +   H  R+ ++T   + G  +  +              Y +     +R R+    + 
Sbjct: 329 VQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYAEERRRILALWAD 388

Query: 338 RISSVVDSDD 347
            + + +D   
Sbjct: 389 FVDAQIDEGR 398


>gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231]
 gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231]
          Length = 194

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +         K     AGV    S H  R   AT   +AG     +    G + V+  
Sbjct: 115 HHIEPKSLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTT 174

Query: 320 ETYTKGAD 327
             YT  A+
Sbjct: 175 MIYTHVAN 182


>gi|77415041|ref|ZP_00791110.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
 gi|77158908|gb|EAO70150.1| integrase/recombinase, phage integrase family [Streptococcus
           agalactiae 515]
          Length = 265

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 70/265 (26%), Gaps = 13/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++        LA N+  S+       +    +     +       G       P +  
Sbjct: 1   MKDFELHLRKAGLAENTIRSYLYGVRFFLEHY-ELKIEDL---FEYKGYLLDNFKPKTVN 56

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  +     +    +       +  +           +      +      +  +   
Sbjct: 57  LRLQGLNKYLVFIGHDDLKLKFVKIQQKPFLEDVISHADY---LFLKRSLKKDDNLKWHF 113

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              FL  +G R S+  +  V+H++   F I ++              D   K L      
Sbjct: 114 VVWFLGATGARVSELIKLKVEHVEVGYFDIYSKGGKMRRLYIPKKLRDSCQKWLDTENRQ 173

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   Q + A   +   K  A K  +N      H  R   A            L 
Sbjct: 174 SGYLFLNKFSQPITARGIAQQLKNYAVKYQLNTKVVYPHSFRHLFAKNFLAKYNDIALLA 233

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G ++++    Y +     +  I
Sbjct: 234 DLMGHESIETTRIYLRKTATEQQAI 258


>gi|308172716|ref|YP_003919421.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
 gi|307605580|emb|CBI41951.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7]
          Length = 382

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 112/373 (30%), Gaps = 42/373 (11%)

Query: 11  VTKERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPR 65
           +        +  + +R       G+R             AY + L   ++     I    
Sbjct: 12  LYYYFNAKKEKRWLYRHRYYDAFGKRREKSKQGFKKENEAYRALLEVKTSVLNGDIKEVE 71

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRS 121
            +  T+   +  + ++       +++  + +   + II+            K+T K +  
Sbjct: 72  NENLTISEWLDIWYETNK-NQWEISTCENRKLIIETIIKPLLGKIKLTKLDKVTYKRLFI 130

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               ++++P S  Q+  + ++    AV  E +  N    +  P+ K E    +T  ++++
Sbjct: 131 NELLKEYSPGSVAQYHATFKISINAAVDSEILRRNRFNKIIIPQPKKESENFYTASELRE 190

Query: 182 FKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQ 227
           F   +   E        E L ++G+R  ++       +                     +
Sbjct: 191 FLEAFKRYENITNYTMVELLAFTGMRRGEAMGLKWSDVDFEGLTISINRTRDANGIRSPK 250

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---------------KMNATQFSIW 272
              +  T+++    +  L +     +   I+  K                 ++ T     
Sbjct: 251 TKNSYRTIKVIGELITQLKVYRKWCKELMISFGKHLSEDDFIFINKSTTKPISHTVIRYA 310

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
                 K  + + + HG+R   ATI          +    G        TY        L
Sbjct: 311 IDRVTKKENLKRITVHGLRHTHATILISKRIPVKVISDRLGNTPEMVLNTYGHSF--KEL 368

Query: 332 GIKNSRRISSVVD 344
             ++    +  + 
Sbjct: 369 EEESVEAFADALA 381


>gi|300898394|ref|ZP_07116737.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|300357934|gb|EFJ73804.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 416

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S ++ + 
Sbjct: 375 YARQRAYMLQQWADMIDSWINGEH 398


>gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9]
          Length = 414

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 82/263 (31%), Gaps = 23/263 (8%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT---PSSAIQFLTS 139
             LA  +   + +     +  + D       I+   +   +  ++ +   P S + F  +
Sbjct: 134 RGLAPETTRIYRTRVSHFLEWALDRRASLSVISLSDVDDFILMKRASGYLPRSIVSFCGA 193

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFWSEGSQPRLAFE 197
           +R+ F++A  + +   +  L++  P         +  T +D+++  +  +E      A  
Sbjct: 194 IRMFFRYAEERGWNNSHIPLNLRGPHIPRYLSAPKGPTWKDVRRLINNKTETPVELRATA 253

Query: 198 FLLYS---GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMT 248
            L      GLR S+     +        +    +       + P  F      +  L   
Sbjct: 254 ILYLCSIYGLRSSEVVGLRLSDFNWVSETFVVHRAKRGRVQQFPIQFEVGEAILGYLQRG 313

Query: 249 PIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301
                   +    +    T            +  K G+   N   H +R   AT     G
Sbjct: 314 RPQCVCRNVFVTLRPPYRTVRATTLWGIAADRMKKLGITSENYGGHALRHSCATELLRRG 373

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
           ++  ++    G + +     Y K
Sbjct: 374 SSLKDIADFLGHRDMRSVSIYAK 396


>gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|209886555|ref|YP_002290412.1| phage integrase family protein [Oligotropha carboxidovorans OM5]
 gi|209874751|gb|ACI94547.1| phage integrase family protein [Oligotropha carboxidovorans OM5]
          Length = 414

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 110/349 (31%), Gaps = 23/349 (6%)

Query: 2   TPSLRLPPFVTKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           TP  R   FV   RT   G  +  +  G   R+ L           + + L G     E 
Sbjct: 49  TPKGRK-VFVVMYRTAGSGSRLRKYTIGPYGRVTLNQARV-AAQKVFAAKLEGRDLAAEK 106

Query: 61  INSPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
             S R+     ++ L+  +       + +            + +    G     +I+ + 
Sbjct: 107 AASRRRIVADRVEDLLEAFIAQHVSQNRSA---REISRMLRREVGAVWGSRSIHEISKRD 163

Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           + + V S +    P +A + L +++  F+W V +  +  +P   V  P ++    R  + 
Sbjct: 164 VIAIVNSIEQRGAPIAANKMLKTIKTFFRWCVGRALLDRSPADGVPLPAKQVARDRVLSD 223

Query: 177 ED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGT 231
           ++ ++   +    G       E L  +G R  +  R     +     + +      K G 
Sbjct: 224 DELVRVILAARQLGGPYGNIVEMLALTGQRREEVARCTWDEINLTTRTWRLPSERTKNGK 283

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
              + L D  + +LA    G +  F            F          + V     H +R
Sbjct: 284 AHEIYLSDQAVAVLARATTGTKFVFSKTGAFAF--QGFGPAKDEIDKLSDVTGWRLHDLR 341

Query: 291 KFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIK 334
           +   +  A  G   H        +T      A  Y +       +  ++
Sbjct: 342 RTCVSGMARLGVAPHVADKILNHQTGTISGVAAVYQRHDFLAERKAALE 390


>gi|126739278|ref|ZP_01754972.1| Integrase [Roseobacter sp. SK209-2-6]
 gi|126719895|gb|EBA16603.1| Integrase [Roseobacter sp. SK209-2-6]
          Length = 339

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 111/335 (33%), Gaps = 23/335 (6%)

Query: 18  HGKIIYYFRK-GHGRRIRLPYPHEST----FIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           H    +Y RK  +G+ I L           F   Y   ++G   +           T+  
Sbjct: 12  HSSGRWYVRKCVNGKMIYLGRITAKEDTAEFDHQYWEIVSGKRAE---------AKTSWT 62

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
            LI+  R++  W + +   R   E  F  +  K G  D  ++T   I   +E  KH    
Sbjct: 63  ALIAAMRETDKWANFSPRYRKDLEPVFTYLTEKIGKADVVRLTQADIYDAMEKNKHRVRF 122

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQ 191
           A    T++ +L K A+R+ +   NP + +E  K      +P         +    EG S 
Sbjct: 123 ANYIPTAISMLSKLAIRKRWRKDNPAIDIEPLKVPKARKKPHVPWTDWAVERLRDEGESL 182

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246
           P L FE  + S  R  D               ++  KTG  + +   +     L      
Sbjct: 183 PVLIFEIGVGSVQRPGDWVDFQWGDYDGETLKLRQNKTGKPLLLPCTEALKTALDRAKAE 242

Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
               P          D   M+    +     +  + G+     H +R       A AG T
Sbjct: 243 LGFVPHPLRHILTRADGSAMDYHAMARVMVRERKRLGLMAFDQHALRYRGVMELAWAGCT 302

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
             E+ +  G  +      Y   A +I    + + +
Sbjct: 303 DDEIASFSGHTSKAMIVKYAGEARQIMRARQAAAK 337


>gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +   + T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTTKRHHAHQTSVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021]
 gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021]
          Length = 329

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 84/315 (26%), Gaps = 37/315 (11%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIR 120
           L   ++ + +         +V++  ++   F  ++  +               I    I 
Sbjct: 4   LAQHLTAFLREHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMIL 63

Query: 121 SGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----- 171
           + +E     R +   S    L +++  F++   +    ++  L V     K         
Sbjct: 64  AFLEHIEETRGNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVAS 123

Query: 172 --RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227
             R   +  +         G + R         GLR S+     +               
Sbjct: 124 LSRTEVQALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLTLDQFDGRSPASIHIIG 183

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKA-- 280
           K      + L       +      +        F+NN  + M  + F    +  A  A  
Sbjct: 184 KGRRERVLPLWQETAAAIRAWIAVRPKNGDTALFLNNAGRMMTRSGFEYILEKHAAAAVS 243

Query: 281 ------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GI 333
                   + S H +R   A     A     ++    G  ++   E Y +     +L  +
Sbjct: 244 VAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEML 303

Query: 334 KNSRRISSVVDSDDP 348
                +        P
Sbjct: 304 DALAPLGIKPGKFRP 318


>gi|330816762|ref|YP_004360467.1| integrase family protein [Burkholderia gladioli BSR3]
 gi|327369155|gb|AEA60511.1| integrase family protein [Burkholderia gladioli BSR3]
          Length = 358

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 91/342 (26%), Gaps = 39/342 (11%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINSPR 65
           +   + + G I Y  +     + ++ +    TF       A++        +   I   +
Sbjct: 4   IVPRKRKDGSIGYTAQIRLKVKGKVVHTEAKTFDREPAASAWIKKRERELSQPGAIEGAK 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
           ++  TL  +I+ Y +      +      + +   + I  +   +    ++ +        
Sbjct: 64  REDPTLGEVIARYIREDK-RGIG----RTKKQVLETIRGKDIAERPCSELRSADYIQFAR 118

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           S    P +   +++ +  + +  + +         S              T + + + + 
Sbjct: 119 SLDVQPQTVGNYMSHLGAIVR--IARPAWGYPLAESEFDDAMVVGKRLGLTGKSVARDR- 175

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                +   L      Y+ +   +     ++ L         ++              ++
Sbjct: 176 ---RPTPDELNRILEYYTEMAKRERAELPMRELIVFALFSTRRQEEITTIRVEDFEGDRV 232

Query: 245 LAMTPIGKETFFINNDKQ---------------------KMNATQFSIWFKAKATKAGVN 283
           L            N+                          N    S  F        ++
Sbjct: 233 LVRDMKHPGQKKGNDTWCDVPPEAARVIEAVRPKSGPIFPYNHRSISASFTKACAFLSID 292

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               H +R   A+   + G     + A  G ++    + YT 
Sbjct: 293 DLHFHDLRHEGASRLFEMGLNIPHVAAVTGHRSWSSLKRYTH 334


>gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578]
 gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923]
 gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578]
 gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923]
          Length = 309

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 82/291 (28%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + ++K  T      E+      G++   +   +     +I     D   + +     + 
Sbjct: 2   KARKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPDLKIKDLDRYTYQQ 61

Query: 122 GVESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWT 175
            + S   T            ++     AV +  ++ NP   +    + P+ K        
Sbjct: 62  LLNSYALTHEKQTTMDFHHHLKGAILDAVDEGVISQNPTRKIVIKGKTPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           +      +    E          ++ +GLR S++          +   I   KT      
Sbjct: 122 EVQALLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMV 181

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                      +   +++        +     K        K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKGPDKPIFVKSRVFNSTINNRLKVLCEN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63]
          Length = 397

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 91/380 (23%), Gaps = 65/380 (17%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-- 66
            +  K     GK  + +         +P           ++        ++ ++      
Sbjct: 24  RYAYKYIDTFGKPQFVYSWK-----LVPTDKTPAGKRDDIALREKEKEIQKDLDDGIDHI 78

Query: 67  -KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV 123
            K  T+      Y K      ++   ++   +     +   K G      +     +   
Sbjct: 79  GKKMTV---CQLYAKQIRHRANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWA 135

Query: 124 ESRKHTPS---SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKED 178
              K       +      S++  F  A++ + +             +  TE   P +   
Sbjct: 136 LRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQ 195

Query: 179 MQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------ 217
              F           +       LL +GLR S+ C      +                  
Sbjct: 196 EAAFLSFVQHDKVYQKYYDEIIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIAD 255

Query: 218 --------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                         +    S K  +    +  +       +L               K  
Sbjct: 256 VGYYVETPKTKSGNRVIPMSEKVLEAFQRVLNKRKYAQTVILEGYTKFLFLNRNGLPKVA 315

Query: 264 MNATQ-FSIWFKAKAT--KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +N    F    +      K  + K  + H +R    T  A+AG     L    G   ++ 
Sbjct: 316 VNYESMFRGLVRKYNKTQKVALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINM 375

Query: 319 AETY-------TKGADRIRL 331
              Y       T   +  RL
Sbjct: 376 TLNYYAHTTSETSITEMKRL 395


>gi|149907695|ref|ZP_01896442.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
 gi|149809365|gb|EDM69294.1| hypothetical protein PE36_07397 [Moritella sp. PE36]
          Length = 401

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 95/359 (26%), Gaps = 39/359 (10%)

Query: 17  RHGKIIYYFRKGHGRR---IRLPYPHESTFIPAYMSALT--GSTPKREYINSPRKKPT-- 69
           + G   +  R     R   I +    +     A   A    G         + R      
Sbjct: 51  KTGNKRFLLRYKFNGRKCSITIGRFPDIDINQARKVARKYKGMIADGVDPKAERDNQVDY 110

Query: 70  -TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVE 124
            T+K      Y        LA   + ++     +  +      +  Y ++T  H+     
Sbjct: 111 PTVKSFFYDTYL------PLAKRRKKTWGIDEKRFRKHCSSISNIKYNELTVSHVMKLHL 164

Query: 125 SRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           +   T        P++  + L  ++ + K A     V  N    V          R    
Sbjct: 165 TLSETKYKGEYYAPATCNRVLALLKTMGKLAHSMLDV-DNVADRVSLLPENNARTRYCDI 223

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           ++ ++         +P +     L    G R  +        +     ++   +T     
Sbjct: 224 DETKRIIKVARAYPKPSIGNFIALLHLIGCREGELRFRVHSDINFEKRTLTIPRTKNGTY 283

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGVN----KSA 286
             +    + +  +  I K +                      F      AG+        
Sbjct: 284 HIIYLSDLMIEILQSIPKISGNNFVFPAPHKKGKPIGAPRYSFDIIKQMAGIENPDEVLL 343

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H  R   A+     G     +      K +     Y K ++  +   + +  ISS+V+ 
Sbjct: 344 HTARHSVASNLISNGVDISSVQKLLNHKDISSTLRYAKLSEGKQR--ETASMISSMVEE 400


>gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 299

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 91/292 (31%), Gaps = 26/292 (8%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I    K     +    +  ++  Y    +    D    KIT K +   ++  K    S+ 
Sbjct: 14  IERLIKIIRQRNYKKATAYTYMKYNLDFL-HFADKPAEKITVKDLNRYMDHLKKRKVSSS 72

Query: 135 QF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
                ++S+++ F+  ++      N     +RP R+       T ++MQ      S  ++
Sbjct: 73  TIQINVSSLKMFFEDVMKM-----NLFQDFQRPVREYNNPNAITYKEMQNILKTASSNAK 127

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP 249
             L    + + GLR  +       ++        IK+       TVE+P     L+    
Sbjct: 128 HELMCGLVYFGGLRVGELISLRWAYIDTKRKSIQIKSPILSQSRTVEIPVELGALVKKYE 187

Query: 250 IGKETFFINNDKQK-------MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300
                   N              +             +G+    +   +R   A      
Sbjct: 188 REIVNSSSNTYLFPGKSLGSHTTSRNVERIISEIGKNSGISSPVTVFTLRHSRALHLIAD 247

Query: 301 GATAHELMATYGWKTVDQAETY------TKGADRIRLGIKNSRRISSVVDSD 346
           G++ +++    G KT+   E+Y       + A R +      + I     + 
Sbjct: 248 GSSLNQVKDFLGHKTLASTESYLPVKKNLRAAVREKSRQDALKNIRKKFKTR 299


>gi|88858982|ref|ZP_01133623.1| site-specific recombinase, phage integrase family protein
           [Pseudoalteromonas tunicata D2]
 gi|88819208|gb|EAR29022.1| site-specific recombinase, phage integrase family protein
           [Pseudoalteromonas tunicata D2]
          Length = 358

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 96/343 (27%), Gaps = 32/343 (9%)

Query: 10  FVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRK 66
            + K     G   Y    R      +        +    A    L  ++   +     + 
Sbjct: 5   NIEKRAKADGSFSYRCTVRVKDNGVMIHRESKTFSKKEVARQWGLNLTSKIEQDGALKKL 64

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVES 125
           K   L  L++ Y        L  N+  +       +I           + T  + +  ++
Sbjct: 65  KAVPLGALLNLYFNDH---DLWANTGRTKRYVIKMLIDCDIAKVLSSNLKTSDLITHCKN 121

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------------------CLSVER 163
           R+     P++    +  +R + K A     +  N                         R
Sbjct: 122 RRDAGTGPATIYHDIAYLRSVMKKAGPVFNIDANYKIFEDAVPVLIEMGLVGKSQKRTRR 181

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           P             +   +++            EF + + +R  + C      L  +  +
Sbjct: 182 PTENELERLKKGLTERMNYRANGEVRIPYLDILEFSILTCMRIGEVCALRWDDLNRDHKT 241

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV 282
           I  +        E     + LLA +           D      +   +  F+    + G+
Sbjct: 242 ILVRDRKDPRKKEGNHMIVPLLAGSFDIVMRQPKTTDLIFPFKSRSVTAGFQRVRNELGI 301

Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
            +   H +R+  A+   + G +  E+    G + ++   + YT
Sbjct: 302 EDLRYHDLRREGASRLFEKGYSIEEVAQVTGHRNLNILWQVYT 344


>gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +     +  +       +  ++        +     AG+  + + H +R   AT 
Sbjct: 74  WAWQYVFPAERLSVDPRTGVTRRHHLDPRSIQRALRDALRFAGIAKHATPHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             D G     +    G K V     YT   
Sbjct: 134 LLDNGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|323970469|gb|EGB65730.1| phage integrase [Escherichia coli TA007]
          Length = 374

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 22/298 (7%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  TL   + +Y K+        + +  +    + I R    D    +ITT  I 
Sbjct: 3   RKIKIRKMTLNRALDKYLKTVSVHK-KGHLQEVYR--VNVIKRHPVADRYMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKT 168
           S  + R          + T ++    L  +  LF  A  +          L  +      
Sbjct: 60  SYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNG 119

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
              R  + E+ +  + F  +  Q  + F   L + +R  +      +HL          +
Sbjct: 120 RERRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPE 179

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           T   +  ++P           +      IN +     ++ F   ++       +     H
Sbjct: 180 TKNGLPRDVPLSRKA---RNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFH 236

Query: 288 GVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 237 DLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 294


>gi|260910286|ref|ZP_05916961.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260635588|gb|EEX53603.1| phage integrase family site-specific recombinase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 267

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 75/265 (28%), Gaps = 12/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  ++ +    ++A N+  ++    +        +         +       +  P +  
Sbjct: 2   VESFKTALRESNMAENTISAYTYAVN---DYFAKYKALNKRNLLLYKANVIEQFKPKTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    +   + +    +  +              +      + K    E      
Sbjct: 59  LRIQALNKFLEHIGKPKLHLKSVKVQQRTYLENVISQADY---IFLKKKLKQEENLMWYF 115

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIG 251
              FL  +G R S+  +  V+H+    F I ++                  K    T   
Sbjct: 116 VVRFLTTTGARVSELIQIKVEHVHIGYFDIYSKGGKVRRLFIPKRLREETEKWFKETQQT 175

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F N   +++     S   K  A + G+N +    H  R   A    +A      L 
Sbjct: 176 TGYIFRNRFGERITTRGISQQLKNYAERYGLNANVVYPHSFRHRYAKNFLEAFNDIALLA 235

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G ++++    Y +     +  I
Sbjct: 236 DLMGHESIETTRIYLRRTASEQQAI 260


>gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium]
 gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|296136333|ref|YP_003643575.1| integrase family protein [Thiomonas intermedia K12]
 gi|295796455|gb|ADG31245.1| integrase family protein [Thiomonas intermedia K12]
          Length = 340

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/330 (9%), Positives = 81/330 (24%), Gaps = 28/330 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
            R G      R+     +            A+         + ++++    K  T    +
Sbjct: 6   KRAGAWRALIRRKGYPALS-ATFDTKAEAEAWARKTESEIDRGQHVDHRPAKAVTFSDCL 64

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133
             Y  +         +          +           +         + R    +P+S 
Sbjct: 65  RRY--AVEVSEQKKGADAERSRIVFLLEHPLSKRAIGDLRPVDFARHRDERLAAVSPASV 122

Query: 134 IQFLTSMRVLFKWAVRQE----------YVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
              L  +  LF  A+R+            ++     +    +   +              
Sbjct: 123 RLELALISHLFSVAIREWGLGLSSNPIQQISKPKVQNARDRRLAGDEEERLFAAIDAICA 182

Query: 184 SFWSEGSQPRLAFEFL--------LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                 ++  +             L + +R  +   A   +L     + +          
Sbjct: 183 IRTPRANRAAVHPAMWFKQIVILALETAMRQGELLEATWDNL---HANERYLFLPDTKNG 239

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                 +  +A+  I       +     ++A     +++     A + +   H +R  + 
Sbjct: 240 TARSVPLSHIALDAILSVERTDDTRIFPVSAFAVKNYWEKALRLAAIEDFHFHDLRHEAT 299

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           +  A      H+LM   G K+      Y  
Sbjct: 300 SRLARK-LPMHDLMKVTGHKSSAMLARYYH 328


>gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 675

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 75/327 (22%), Gaps = 54/327 (16%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 207 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 266

Query: 118 HIRSGVESR---------KHTPSSAIQFLTSMRVLFKWA--VRQEYVAINPCLSVERPKR 166
           HI + +E           + + +   + L ++R           +         +  P+ 
Sbjct: 267 HIEAYIEFLFEYANSKNVQSSRNFVREELKAIRRFLNDIASQNYDIAPSEDIRFLIYPQD 326

Query: 167 KTEGIRPWTKEDMQQ------FKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL- 217
             +  +  + +                      L     +   +GLR SD        L 
Sbjct: 327 FPKREKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLKNNCLA 386

Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFIN 258
               + +I +   +       + + +    ++                            
Sbjct: 387 KVNGKFSIITDIAKTFVKGHRIPIDNELADIVAVLIANSKIKSTKDNNPNNYIFAIHKGK 446

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMAT 310
                             A    +        +   H  R   A    + GA    +   
Sbjct: 447 RKGMPFTQHMVRAHLNHLAKTKNILDEQGEVFHFKTHQFRHTYAVKLLNGGADILTIQEL 506

Query: 311 YGWKTVDQAETYTKGA-DRIRLGIKNS 336
               + +    Y K   D  R   ++ 
Sbjct: 507 LAHSSPEMTLRYAKLLDDTKRKAFESV 533


>gi|256833339|ref|YP_003162066.1| integrase family protein [Jonesia denitrificans DSM 20603]
 gi|256686870|gb|ACV09763.1| integrase family protein [Jonesia denitrificans DSM 20603]
          Length = 395

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 95/366 (25%), Gaps = 55/366 (15%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             RR               M        +        ++ TT+K    E+       +L 
Sbjct: 31  GTRRRITVSAKTKAEAQRKMRDREREIARNGIPTEGSRRATTVKAWAEEWLP-LQERTLR 89

Query: 89  VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLF 144
             S  S  S     II   G      +   HIRS   + +     PSSA++    +  L 
Sbjct: 90  PQSYASTRSAVTKWIIPTIGHVKLATLNPGHIRSVHNAVRDAGLKPSSAVRTHAVLMALL 149

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             A+ +    +          +  +  R     +        +        +   L   L
Sbjct: 150 NDALTEGGHTVPDAPLKVSGPKAGKSTRDAIPLEHALIVLQAALARPDASRWVAALLQAL 209

Query: 205 RCSDSCRAGVQHLQNN---------------------------------------IFSIK 225
           R +++      H+  +                                          ++
Sbjct: 210 RPAEARGLTWAHIDFDADTIDISWQLKPVPYKTPRDRTSGFRVPDDYEATHLVDSYHLVR 269

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-----WFKAKATKA 280
            +       + +       L      +     +    + +    +       ++     A
Sbjct: 270 PKTDSGQRIIPMVPWMKAALLAWREAQGGSPYDLVWCRADGRPLTDKQDVAAWRTLCETA 329

Query: 281 GVNKSAHGV---RKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           GV   A+ +   R  +AT+   AG     ++A  G  T+   + Y     +R R  ++  
Sbjct: 330 GVP--AYDLYEARHTAATLLRKAGVDDETIIAIMGHATILSTKAYLHSDTERAREALQKV 387

Query: 337 RRISSV 342
            +   +
Sbjct: 388 AQALQL 393


>gi|41179410|ref|NP_958719.1| Bbp50 [Bordetella phage BPP-1]
 gi|45569541|ref|NP_996610.1| integrase [Bordetella phage BMP-1]
 gi|45580793|ref|NP_996659.1| integrase [Bordetella phage BIP-1]
 gi|40950149|gb|AAR97715.1| Bbp50 [Bordetella phage BPP-1]
          Length = 401

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 102/341 (29%), Gaps = 44/341 (12%)

Query: 47  YMSALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF------ 99
                 G+    EY  +       T+K  +  +  +    +   +++  +ES        
Sbjct: 55  RERIRHGTFSMAEYFPASGAGSGLTVKGWLDTWLDTQSVEN---STKAGYESAVNFWNNA 111

Query: 100 --------DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQ 150
                     I    G    R +   H+ + +  R   T  +   +++ +R     AV  
Sbjct: 112 AALVDRETKAIQATVGSLSLRALKPSHLLTAIAQRPDLTGKTVNNYVSVIRQALDLAVAD 171

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGLRCSD 208
           + +  NP   V R K +     P+T+ + +            Q     E   +SG R S+
Sbjct: 172 KIIKENPASEVPRQKHQKPPPDPFTRAEAEAIIADMAKHYPEQVYNMVEAWFFSGPRTSE 231

Query: 209 SCRAGVQHLQNNI------------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
                  ++                    + KT     V L    +  L           
Sbjct: 232 VFGQRWPNVDLFSAKLAIVEAVVRGEQKDSTKTNVARDVLLNSRALAALNRQAKHTRMVG 291

Query: 257 INNDKQKMNATQF-------SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308
            +        T +         ++     + G+  +  + +R   AT+   AG T     
Sbjct: 292 EHVWHDPRYGTPWTEERAFRRSYWTPCLKRLGIRYRRPYNMRHTYATMMLMAGMTPAFCA 351

Query: 309 ATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVDSDDP 348
              G  +++    TY K  D  +  ++   R  + + +D P
Sbjct: 352 RQLGH-SIEMFLRTYAKWLDGAQNDLE-MARFEATLGADLP 390


>gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 7/125 (5%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L        G   +       +                   L++ P   +    +  +  
Sbjct: 44  LLHRQDLARGGGEVYLPFALSRKYPNAKRAWSWQYVFPAAKLSVDPRSHDVRRHHVQE-- 101

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                     K    +AG+ K  S H +R   AT   + G+    +    G K V     
Sbjct: 102 ---KNLQNAVKIAVREAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMI 158

Query: 322 YTKGA 326
           YT   
Sbjct: 159 YTHVL 163


>gi|315655984|ref|ZP_07908882.1| phage-related integrase [Mobiluncus curtisii ATCC 51333]
 gi|315490048|gb|EFU79675.1| phage-related integrase [Mobiluncus curtisii ATCC 51333]
          Length = 379

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 98/359 (27%), Gaps = 50/359 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
             RR R+        + A +  L          ++P     T+K     + K   + S+ 
Sbjct: 29  GKRRRRVVSSKTRAGVKAKLEKLKRDIAAGSTGSNP-----TVKEYSDLWLKQKQY-SIK 82

Query: 89  VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF--LTSMRVLFKW 146
            N+   F      +    G     ++T + + +    +     SA     + S+  +   
Sbjct: 83  PNTYDGFRRCITILNSLIGKKRITEVTGRELENIGYRQLSEGLSASYVQLMQSIWAMMFG 142

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              ++ +A+ P ++  R  ++ +  R     +        +      + +   L  GLR 
Sbjct: 143 DAARDGIALRPDVAGFRKVKREKSRRASIPREDVGKLLEQARKIPGGVRWGIALTLGLRQ 202

Query: 207 SDSCRAGVQHL-----------------------------QNNIFSIKTQKTGTIITVEL 237
            ++     + +                                 +  + +       + L
Sbjct: 203 GEALGLRWEDIDLDAGVLTVSWQLQGLTGRMPSGIETIPLMGKYYLTRPKTGSGERVIPL 262

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGV------NKSA 286
               +  L                Q             + +K     AGV          
Sbjct: 263 TGSMVAWLREWEAIAPKNPWGLVFQSARGKPVPAEIDRMGWKDLQAAAGVARPNGKPYIL 322

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           H  R  +AT+  +AG     + A  G         Y       RL ++   ++  ++ S
Sbjct: 323 HEARHTAATLMLEAGVLPVTVAAIMGHSGTRMQAVYQHPG--HRLELEALTKVEGLIGS 379


>gi|291543316|emb|CBL16425.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13]
          Length = 310

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 88/283 (31%), Gaps = 25/283 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
                +++ K    G++   +   +    + + + S +     IT    +  +     T 
Sbjct: 11  FHEYYAQWIKVYKEGAIRPVTLNKYLVTLEWLKKLSPNLKLGDITRITYQQLINDYAETH 70

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     AV +  +A +P     ++    + +  +   + ++    +  
Sbjct: 71  ERQTTMDFHHQIKCAILDAVDEGLIARDPTRKAIIKGKTPRAKKPKYLNQFELHTMLNHL 130

Query: 187 SEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------T 231
               Q    +  LL   +G+R S++     +       ++   KT               
Sbjct: 131 KLTPQISWDWFILLVAKTGMRFSEALALTPKDFDFPHQTLSINKTWDYKHGTGFLPTKNR 190

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGVNK-SA 286
               ++   +  ++  + + K          K +        +   +     AGV   S 
Sbjct: 191 SSVRKIQMDWQTVIQFSGLVKGLPEDKPIFVKESQKVYNATINDILERHCKAAGVPVISV 250

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
           HG+R   A++   AG +   +    G  ++   +  Y      
Sbjct: 251 HGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 293


>gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM
           20583]
 gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 355

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 107/348 (30%), Gaps = 60/348 (17%)

Query: 56  PKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--- 109
            ++E I +  K    L  L   + +Y ++    + +  +R+S+        R   +    
Sbjct: 8   REQEKIENTVKLREFLTELPPYVKDYFRAKEPTT-SDKTRLSYAYDLRVFFRFLQETNPS 66

Query: 110 ------------DYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKW 146
                       D   +         E  K           ++ +   + ++ +R  + +
Sbjct: 67  LKEKSLSEISIQDLSLLEPVDFEEFQEYLKAYQSADNKLETNSRTGIARKMSCLRSFYDY 126

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----------------SFWSEGS 190
             +++ +  NP   V+ PK K + I     +++                     +  +  
Sbjct: 127 LCKRQLLTSNPVRLVDMPKIKEKAIIQLDPDEVANLLDYIENYGKQLSGVKLYHYNKQKY 186

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------ 244
           +       LL +G+R S+     +  +      I+  + G    +      ++       
Sbjct: 187 RDIAIVTLLLGTGVRVSELVGLNIGDIDFKNNGIRILRKGGNEMIVYFGAEVEQALKDYL 246

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
                 +      ++  F++  +++++        K  A+   V   + H +R    T  
Sbjct: 247 EISRNSITPLSGHEDALFLSGQRKRISVDAVEKMVKKYASAVSVKTITPHKLRSTYGTAL 306

Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344
                  + +    G   V+   + Y K +D  R     +  +   ++
Sbjct: 307 YRETGDIYLVADVLGHSDVNTTKKHYAKLSDERRRSASKAVVLREKLE 354


>gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 2/91 (2%)

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295
             G+  +L       +       +  +         K     A + K  S H +R   AT
Sbjct: 73  QWGWFWVLPSNHESTDPRSGIVRRHHIYEQSIQRAIKRAVLAAKLTKPASTHTLRHSFAT 132

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +AG     +    G   V     YT   
Sbjct: 133 HLLEAGYDLRTVQELLGHADVSTTMIYTHVL 163


>gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4]
 gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4]
          Length = 413

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 108/381 (28%), Gaps = 60/381 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R R GK+ +  R      +      E        +A      +R     P  + TT+ 
Sbjct: 4   QKRIRGGKVRWVARYVGSDGLERSKTFEFEKQAKAWTAERERELRRGEWIDPADQDTTVG 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH 128
            L   +  SA        +R   E       ++ R   G      I T  + S    R  
Sbjct: 64  QLWQAWEMSATTDG----TRKVRELVGRNLGRLERTPIGKVRPSDIRT-WVHSLRNGRPW 118

Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                   P++   F   +   F  AV    +  +P   +   R   +          D 
Sbjct: 119 VKGCTGLAPNTVGNFQGQLAGCFSMAVADGLLLKSPTEGIAKRRKVDRAISRSELLNADE 178

Query: 180 QQFKS----------FWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQN-------- 219
                               SQ  LA   +    +GLR  +     ++ +          
Sbjct: 179 IWQLVETASAGVQTGRNWIASQKTLARMIIVGAATGLRAGEIAGLRIRSVDFLRRELAVT 238

Query: 220 --------NIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMN 265
                          +       + LPD  +  L                F+   ++  +
Sbjct: 239 EQSKSGTSEFLWAPLKTAAASRVIPLPDAAIGALSDELRENPNSDRSMPVFLTARQRMWS 298

Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           ++     F+A   + G++   + H +R F A+    AGA+   +    G +  +   E Y
Sbjct: 299 SSTVGKSFQALRDRCGLDDEVTWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVY 358

Query: 323 TK----GADRIRLGI-KNSRR 338
                   +R R  + +   R
Sbjct: 359 AHLWPGEDERTRSAVDEALSR 379


>gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 371

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 80/279 (28%), Gaps = 20/279 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  Y +              +E  +        G   + +I         E      
Sbjct: 93  GDFLEYYHQQLRKHDQK------WEFVYLHFKNFVHGKCTFEEIDIDLCNKFQEYLLSAK 146

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + + +SA  + ++ R   K   R   +  N    +++   +       + E++ 
Sbjct: 147 KLRRNGRISQNSASGYWSTFRGFLKILYRNGLIKTNVNDFLDKIDTEDTMKEALSVEELY 206

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q      +    ++A  F   + LR SD      + + +     K     T         
Sbjct: 207 QLAETPCKKPIVKIASLFSCMTSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAEDII 266

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +      +  K     AG+ K  + H  R+  AT+  
Sbjct: 267 PISEEALGLIGYSSEKKGLVFKGLMRCWTQVPMKEWIRSAGITKNITFHSYRRTFATLQG 326

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
            AG     + +    K++     Y K  D   R      
Sbjct: 327 AAGTDIRTIQSLMAHKSITTTMRYMKVVDSNKREASNKI 365


>gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
 gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693]
          Length = 328

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  +    +        DF   ++              +I    E RK   +
Sbjct: 32  KSEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S    L++++ L+K             + + +  R  E +   + +D+++    +   S 
Sbjct: 92  SVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIENVLKVSIDDIRKIIELYKIDSE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
              +       L Y+G+R  +      +H         F +   K+G  +   +    +K
Sbjct: 152 KKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPVHKSLVK 211

Query: 244 LLAMTPIGKETFFI---------------NNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            L          +                 ++   ++    ++  +        + S H 
Sbjct: 212 KLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIR 330
           +R   AT  +  GA   E+    G       E Y   +     +
Sbjct: 272 IRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKK 315


>gi|239941212|ref|ZP_04693149.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239941232|ref|ZP_04693169.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239987688|ref|ZP_04708352.1| phage integrase family site specific recombinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 324

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 91/299 (30%), Gaps = 44/299 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------------------FDYRKITTK 117
           + +S    +L+ N+   + +          D                     D   I  +
Sbjct: 15  WIRSLRSRNLSDNTIRIYSTAAAAFAEFLLDPENGYRPAVDQDGTPGRPAPADLDDIHRE 74

Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           H+ + + +  R+ + S+A     S++ +F W V +E +  +P  +++ P      +    
Sbjct: 75  HVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTLPEVEVPVIP 134

Query: 176 KEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTG 230
             D+ +             +       LL +G+R S+     V  L  ++       K G
Sbjct: 135 DADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLKVLHVLGKGG 194

Query: 231 TIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAK 276
               V   +     L                       +   N  Q++         K +
Sbjct: 195 KTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTIWGVGTMLKRR 254

Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA--DRIRLG 332
             +AG+     H  R   A      G    +LM   GWK+      Y   A  +R R+ 
Sbjct: 255 CAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAASAGTERARMA 313


>gi|193070246|ref|ZP_03051190.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
 gi|192956427|gb|EDV86886.1| site-specific recombinase, phage integrase family [Escherichia coli
           E110019]
          Length = 409

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 103/346 (29%), Gaps = 30/346 (8%)

Query: 18  HGKIIYY--FRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKRE--YI 61
            GK+ +Y  +R G GR     RI+L    + +   A   A         G  P+ E  Y 
Sbjct: 40  SGKLTWYFTYRAGTGRETRPERIKLGSYPDLSLKAAREKAAQCRTWLAEGKNPRHEMNYT 99

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
                KP T+   ++ + +     +  V+         + +I++ G     K   +H  +
Sbjct: 100 VQEALKPVTVGDALTYWLEYYVKEN-RVDYIALKRRLNNHVIQQIGAMPLDKCELRHWLA 158

Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPW 174
             +   K TP +A   L + +   K+  R+ Y   N           ++P      +   
Sbjct: 159 CFDQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSNK 218

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++ Q                 L+  G R  +   + +             K  +   
Sbjct: 219 ELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSKTK 278

Query: 235 VELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVR 290
           V +     + +            +      +       S + +    +    + S H +R
Sbjct: 279 VAIFRPIPEAILPFVTQLVEQNRHTGLLLGEAKQEASVSQYGRLAHRRLNHPHWSLHDIR 338

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           +   T+  D G   H +    G +       Y      D  R  + 
Sbjct: 339 RTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 384


>gi|184155514|ref|YP_001843854.1| integrase [Lactobacillus fermentum IFO 3956]
 gi|183226858|dbj|BAG27374.1| integrase [Lactobacillus fermentum IFO 3956]
          Length = 367

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/361 (9%), Positives = 100/361 (27%), Gaps = 33/361 (9%)

Query: 15  RTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R  +            +R +    +      A  +A       +E + +P     TL 
Sbjct: 8   TKRGSRYQARVNWYDNQDKRHQKSAGYFDRRKDAVATAERVRDELQEQL-NPDLTEITLA 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                + +      +   ++  ++   + + +       + +     ++ +      H  
Sbjct: 67  DYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFINWYGADHAR 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKS 184
            S  +   +++ +  +A+  E +  +   +++    K    +        T   M   K+
Sbjct: 127 DSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVIANKDRERKVEYLNQKETAVLMDAVKA 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
                   +      L +G+R S+        L     +I   K+               
Sbjct: 187 DLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEKAFKATKTLS 246

Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285
           +   + +    +K+LA          F+     Q       +   +    +  +      
Sbjct: 247 SRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGHALNKALRLIMHQQAIVKQGFH 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN--SRRISSV 342
            H +R          G   + +    G   +    + Y+   D  +    +   +++  +
Sbjct: 307 FHSLRHVHVAYLLGKGVDVYAISKRLGHSDITITLKAYSYLIDEYKAQNDDLIVKKLQEL 366

Query: 343 V 343
           +
Sbjct: 367 I 367


>gi|215226|gb|AAA32256.1| integrase [Mycobacterium phage L5]
 gi|2739060|gb|AAC31622.1| L5-integrase [Cloning vector pUC-GM-INT]
 gi|2739066|gb|AAC31625.1| integrase [unidentified cloning vector]
 gi|77632626|gb|ABB00291.1| integrase [Integrative shuttle vector pCONINT]
 gi|302749823|gb|ADL66916.1| integrase [Cloning vector pMC1s::WT-HIV2Pr]
          Length = 332

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 102/327 (31%), Gaps = 36/327 (11%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQII 103
              +  +   TP ++          TL+    ++        LA  +R  +  +   +I 
Sbjct: 10  EKRLIEMETWTPPQDRAKKAAASAITLEEYTRKWLVE---RDLADGTRDLYSGHAERRIY 66

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVE 162
              G+    ++T   +R+          +A +     +R +   AV  + +A NPC    
Sbjct: 67  PVLGEVAVTEMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPC---R 123

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS------------------GL 204
             ++  +          +            R+A   L ++                  G+
Sbjct: 124 IEQKAADERDVEALTPEELDIVAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGM 183

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------- 257
                 R G   + N I     +   +   V +P    +++      +            
Sbjct: 184 TMKLRVRRGASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLV 243

Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT 315
                 +++ + F+   K    K G      H +R   AT +A AGAT  ELMA  G  T
Sbjct: 244 TTTQGNRLSKSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTT 303

Query: 316 VDQAETYTKGADRIRLGI-KNSRRISS 341
              A  Y   ++     I +   +++ 
Sbjct: 304 PRMAMKYQMASEARDEAIAEAMSKLAK 330


>gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 412

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 70/265 (26%), Gaps = 17/265 (6%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQ 135
            ++         ++ +       +       ++  I    ++      ++     ++  +
Sbjct: 114 IQTIESSDRKPGTKDNMLGTVATLKEFRNVIEFTDINYTFLKEFDAFLRNKNLKVNTVGK 173

Query: 136 FLTSMRVLFK------WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            +  +R L        + +++ Y      +  E+ +          K +  +     +  
Sbjct: 174 HMRILRTLVNEAINEGYILQEAYPFRKFKIKKEKKEHNFLMPADLEKLENLELPDRRNNS 233

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELPDGFMK 243
                AF F  Y GLR SD  +   ++L                     I + L      
Sbjct: 234 RHILDAFLFCCYCGLRFSDFKQLTYKNLITIDGREWLVLNSIKTGVKLNIPLYLLFNGKA 293

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303
           L  M                          +    + G   + H  R   AT+    G  
Sbjct: 294 LGIMRKYDSIEQLAALGCNSDTNRTLQKLGRMA--RIGKKFTYHTSRHTCATLLVHQGVP 351

Query: 304 AHELMATYGWKTVDQAETYTKGADR 328
              +    G  +V   E Y++  D 
Sbjct: 352 ITTVQKLLGHTSVKTTEIYSEVFDE 376


>gi|222110465|ref|YP_002552729.1| integrase family protein [Acidovorax ebreus TPSY]
 gi|221729909|gb|ACM32729.1| integrase family protein [Acidovorax ebreus TPSY]
          Length = 418

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 113/370 (30%), Gaps = 43/370 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +    +  G + + F    +GRR  L      P   +   A    L             
Sbjct: 24  GMYVTVSPTGTVTFRFDYRLNGRRETLTIGRYGPSGISLAMAREKLLDAKKAVALGKSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++              + S++   A    +A ++R   +S  D+ I+    +    ++
Sbjct: 84  LEKQREKRRLTSAKNFGDMTSQWLAGAR---MADSTRAMRKSIVDRDILPAFQNRLLNEV 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TADDLRALCGKVKGRGAPATAVHIRDIVKQVYAFAILHGEKVDNPAADVGAASIATFVPK 200

Query: 173 -----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
                P     M +     +     RLA   +L + +R S+   A    +          
Sbjct: 201 DRALSPLEIRLMSRQMESVATYPTIRLALRMILLTLVRKSELIEATWDEVDFENATWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           ++        +     + L +                  +  ++        + +     
Sbjct: 261 KQRMKGRNPHVIYLSRQALDILVALHTCAAGSKFVLPSRYDSDHCMSHATLNRVTQIVAQ 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRI 329
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A++ 
Sbjct: 321 RAKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKAEYAEQR 380

Query: 330 RLGIKNSRRI 339
           R  ++    +
Sbjct: 381 RHMLQEWANM 390


>gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   + +++ T      K   T+  +N     H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHRVHQTSVQKAIKRAVTRCNINMRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|254419041|ref|ZP_05032765.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196185218|gb|EDX80194.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 393

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 112/371 (30%), Gaps = 43/371 (11%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLPYPH----ESTFIPAYMSALTGSTP--------- 56
           +    +  G I + +    +GRR  L          T   A    +              
Sbjct: 1   MYVYVSTGGAISFRYDYRFNGRRETLTLGRYGSAGLTLAQARERLIEVKKAIADGVSPAV 60

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           +++      K+      +   +   A    +A ++R    + F++ I+ K  +    +IT
Sbjct: 61  EKQRAKRRLKEAHDFAQVAQGWMDRA---PMADSTRDMRRAIFNRDILPKWKNRLLSEIT 117

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              +R+  ++      P++AI     ++ ++ WA+       NP   V      T   R 
Sbjct: 118 PDDLRAHCKAIVDRGAPATAIHVRDIVKQIYGWAILHGEKIDNPADDVGPASIATFRPRD 177

Query: 174 WTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
            +    +        G        RL  +F+L S +R S+        +  +        
Sbjct: 178 RSLTPAEIRIMLMLLGEVATLPTIRLGLKFILLSMVRKSELQDGVWTEVDFDNAVWSIPA 237

Query: 229 TGTIITVELP----DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                +           + +L                  +    M+   F+    A A +
Sbjct: 238 ARMKRSRPHNVYLSTQMLDILVALKTCAGNSKYILPSRYDADAPMSRATFNRVTSAIAER 297

Query: 280 AGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIR 330
           AG         + H +R+ ++T+  + G  +  +      +       Y K      R  
Sbjct: 298 AGKGNLPLEPFTVHDLRRTASTLLHEMGFNSDWIEKGLAHEERSSRGVYNKAEFETQRRH 357

Query: 331 LGIKNSRRISS 341
           +  + S  + +
Sbjct: 358 MAQEWSNAVDA 368


>gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  YSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R]
 gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
 gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
           3_1_5R]
          Length = 333

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 81/284 (28%), Gaps = 40/284 (14%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  Y    +       G F   +I             ++I   ++ R    +
Sbjct: 32  KSPKTLQDYLFYLKDFLSFVYDGDGSFQQEEILPLMKGIEKEDVEQYIAHLLQERNMKKT 91

Query: 132 SAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           S  + +++M+ L+K    + V   +  +    +        +      K+ ++QF+    
Sbjct: 92  SVNKVVSAMKSLYKELEQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVKSE 151

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  +  +    L Y+G+R  +      +HL N   S   +   T    E        L  
Sbjct: 152 KDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKPLHPALME 211

Query: 248 T-------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                                         +  + ++        K+       + S H 
Sbjct: 212 KLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIEKDMSPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIR 330
           +R   AT  +  GA   E+    G       E Y   K     R
Sbjct: 272 IRHAIATELSLNGADLVEIRDFLGHADTKVTEIYINAKSILEKR 315


>gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4]
 gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 98/338 (28%), Gaps = 23/338 (6%)

Query: 14  ERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           +  RH G  IY +     +R R      S    A        +   E  +   K+     
Sbjct: 36  KTIRHEGLNIYIYANPKNQRERDFNATMSEKAEAI-RCRRFESIVNERYDFFDKRKYK-A 93

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR----- 126
             +  YRK              +E  +        G   + +I  +      E       
Sbjct: 94  DFLEYYRKQLPKHDQK------WEFVYQHFYNFVHGKCTFEEIDVELCNKFREYLLNARQ 147

Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                  T +SA  + ++ R   K   R   +  N    +E+ + +       + ED+  
Sbjct: 148 LKRDGYITQNSASGYWSTFRGFLKILYRNRLIKSNINDFLEKIEPEDVVKDYLSVEDLYC 207

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                 +    + A  F   + LR SD      + + +     K   T T  T       
Sbjct: 208 LAETPCKIPVLKTASLFSCLTSLRLSDILTLCWEEIVDFAAGGKCVHTITQKTKTEDIIP 267

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
           +   A+  I           + +      +  K     AG+ K  + H  R+  AT+   
Sbjct: 268 ISDEALKLIEYSPEKKGLVFKGLKRCWTQVPMKEWIRSAGITKNITFHSYRRTFATLQGA 327

Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
           AG     + +    K++   + Y K  D   R      
Sbjct: 328 AGTDIRTIQSMMAHKSITTTQRYMKVVDSNKREASNKI 365


>gi|110805783|ref|YP_689303.1| putative phage integrase protein [Shigella flexneri 5 str. 8401]
 gi|110615331|gb|ABF03998.1| putative phage integrase protein [Shigella flexneri 5 str. 8401]
          Length = 358

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 103/360 (28%), Gaps = 39/360 (10%)

Query: 1   MTPS---LRLPPFV-TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-- 54
           M        LP  +  + R +     YY+R    +              A   A+  +  
Sbjct: 1   MQRKKYDPNLPRNLTYRRRDKA----YYWRNPLTKEEFTLGKISR--RDAVAQAIEANHY 54

Query: 55  -----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
                +P             T+   I  Y+        + N+  +  +  + I  K G  
Sbjct: 55  IYKNYSPAALIEKLKGVDSFTMAGWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGV 114

Query: 110 DYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167
              +ITT+HI   ++        + A    + +  +F+ A+ +  ++ NP      PK  
Sbjct: 115 LLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIV 174

Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
               R   K      ++     +   LA +  L +G R  D        + ++   I+  
Sbjct: 175 VTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIRQI 234

Query: 228 KTGTI--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
           KTG +                  + +    +     +       N+    ++    +  F
Sbjct: 235 KTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKF 294

Query: 274 KAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            A     G+       + H +R   A                 G  +    + Y    ++
Sbjct: 295 VAARKLTGILFSENPPTFHEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMYLDEREK 353


>gi|321157141|emb|CBW39127.1| Integrase [Streptococcus phage 23782]
          Length = 382

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 97/375 (25%), Gaps = 53/375 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
             + P  +    T  GK  YY R+     G++        +T   A  +AL     + + 
Sbjct: 5   KTKYP-NIYYYETAKGK-RYYVRRSFFFRGKKREKSKSGFTTLPQA-RAALVELEQQIQE 61

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD------QIIRKSGDFDYRKI 114
                    TL      Y +      L+         Y +       I  K G    + +
Sbjct: 62  QELGINTNLTLDQYWDIYSE----KRLSTGRWNDTSYYLNDNLYKNHIKSKFGSALLKNL 117

Query: 115 TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                   +  +   HT  +     +S   L   AV+   +  N    V   +       
Sbjct: 118 DRNEYELFIAEKLQNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAAN 177

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNNIFSIKTQK-- 228
                   +     +E   P+  +     +  GLR  +        +  N          
Sbjct: 178 KKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDITQNDSGRAILHLR 237

Query: 229 ----------------TGTIITVELPDGFMKLLAM---------------TPIGKETFFI 257
                             +   V L D    L+                     K+   I
Sbjct: 238 DSRSNQTLKGKGGLKTKDSERYVCLDDIGTDLIYYLIAEASKIKRKLGIIKEQHKDYITI 297

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           N     +N  Q +  F       G++ + H +R F  T S  AG    +L    G     
Sbjct: 298 NEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKFY 357

Query: 318 QAETYTKGADRIRLG 332
             + Y +  D +   
Sbjct: 358 MTDRYNQVEDELAEA 372


>gi|302869808|ref|YP_003838445.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302572667|gb|ADL48869.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 368

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 106/355 (29%), Gaps = 35/355 (9%)

Query: 12  TKERTRHGKIIYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
            ++R R GK+ Y  R      R R            +++ +     + +Y++      TT
Sbjct: 4   VEKRIRDGKVTYLARWRDDAHRQRKRSFTRKVDADRFLAQVEADIVRGQYVDPS--DKTT 61

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRK-SGDFDYRKITTKHIRSGVESRKH 128
           +      +   A   +    +     S  +  I     G      +    +++    R  
Sbjct: 62  VVEYARRW---AAGRAHRPTTARRVSSLIETHIAATPLGSRRLAAVVPSEVQAWAADRGK 118

Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             +PS+    +  +R ++  AV    V  +P + V  P    E + P T + +++     
Sbjct: 119 VLSPSTLRNLVGLLRSVYAAAVLDRLVGRSPVVRVSLPSAHRERVVPLTVDQVRKLADAI 178

Query: 187 SEGSQPRLAFEFLLYSGLRCSDS------------CRAGVQHLQNNIFSIKTQKTGTIIT 234
              ++  +  +  L   L    +             R   Q    +      +   +  T
Sbjct: 179 PARNRAMVLTQAGLGLRLGELLALRVQDVDFAARLVRIEWQFAPQSKVRTVPKTPRSRRT 238

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI------WFKAKATKAGVNKSA-- 286
           V LP      L                    A  +         F A   KAG+ +S   
Sbjct: 239 VPLPQVVADALRAHMAQFPPADDGTLFTTRFAGPYRHDYYGSIIFGAAVQKAGLPESITT 298

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GADRIRLGIKNS 336
           H +R   A++    G +   +    G +       TY        +R R  +  +
Sbjct: 299 HDLRHHYASVLLMQGESVITVAERLGHENATLVLSTYGHLMPDSEERTRRAVDEA 353


>gi|325979457|ref|YP_004289173.1| integrase/recombinase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325179385|emb|CBZ49429.1| integrase/recombinase, phage associated [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 421

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 94/372 (25%), Gaps = 66/372 (17%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84
            + G      +            + A      +  +         TL+ L   +  +   
Sbjct: 36  VKTGKQVTTTITAKTLKQLDREVIQARL-EFERNGFTRKENVSINTLEDLSEAWFHAYQT 94

Query: 85  GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--------AIQ 135
              + N+      Y  + II K GD+   KI +  I+  +                 A +
Sbjct: 95  WVSSHNTLNRVRGYLDNYIIPKFGDYKPDKIKSADIQLWLNDLAKKSKKSVESGVKRANK 154

Query: 136 --------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---------KED 178
                    +  ++ +F + +    +  NP  +++ P +     +              +
Sbjct: 155 GCAKDFGAVIHKLKDIFDYGITNYGLTFNPVNTIKIPPKPKSSKQRIMVLHDDSLARWLN 214

Query: 179 MQQFKSFWSEGSQPRLAFEFLLY------------------------------------- 201
             +         + +L    LL                                      
Sbjct: 215 YLESLDNSRANRRFKLICNTLLASALRINELLALTIDDLNFEESSISVNKTLLWKTANKK 274

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261
           +G +    C+A  +    N            +     +    L        +  F     
Sbjct: 275 TGTKGKVVCKATPKTDAGNRSIPVPLSILEELRDFHNEMNEYLKLHNRPETKLIFPTIYG 334

Query: 262 QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             M         K +    G+     H  R   A++  +AG    EL    G K++    
Sbjct: 335 NYMCDRNERTTLKNRLAGLGLPDYGFHLFRHTHASMLLNAGTNWKELQVRMGHKSISTTM 394

Query: 321 -TYTKGADRIRL 331
            TY + A + +L
Sbjct: 395 DTYAELAPQRKL 406


>gi|226349908|ref|YP_002777021.1| putative integrase/recombinase [Rhodococcus opacus B4]
 gi|226245823|dbj|BAH47090.1| putative integrase/recombinase [Rhodococcus opacus B4]
          Length = 329

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 68/275 (24%), Gaps = 34/275 (12%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVES----RKHTPSS 132
              + ++  ++      ++              D+  +    I + ++     R ++  +
Sbjct: 20  RRASEHTIAAYRDAMRLLLAFMEQRTHRAPSRLDWTDLDADAICAFLDHLEKDRANSART 79

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-------GIRPWTKEDMQQFKSF 185
               LT++R LF +A  +          V     K            P     +      
Sbjct: 80  RNARLTAIRSLFSYAALRHPEHAALIAQVLAIPPKRFDKAIVCFLDEPEAAAMLAAADRS 139

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------ 239
              G +        + +GLR S+        +                   +P       
Sbjct: 140 TWAGRRDHALMTLAMQTGLRVSELLGLNCGDVVTGTSGHVRCVGKGRKERSVPMTESVRS 199

Query: 240 -GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--------GVNKSAHGVR 290
              + L+       +  F     ++++           A +A        G + S H  R
Sbjct: 200 VMNVWLIERAGQRDDAAFCTRTGRRLSVDAVQRRVNIYAAQARQSCPSLVGKHLSPHVFR 259

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              A     AG     +    G   V     Y   
Sbjct: 260 HTCAMTLLHAGVDTTVIALWLGHADVRSTTAYLHA 294


>gi|222080175|ref|YP_002540038.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738820|gb|ACM39599.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 408

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 81/298 (27%), Gaps = 27/298 (9%)

Query: 46  AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           AY+   +          +P                      LA  +  ++       I  
Sbjct: 102 AYLEDRSVLVGPPAKPVAPLVAE--FAAWA------REQRGLAETTLATYLGTITPFIDT 153

Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTS-MRVLFKWAVRQEYVAINPCLSVER 163
            GD          IR+ +  R    S A    ++  +R   ++ +           ++  
Sbjct: 154 LGDTP-AIYDAATIRAYMIERAKAVSVARMKGISVGIRAFLRFLIATGRCRPGLDHAMPN 212

Query: 164 PKRKT--EGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
                     R     D+ +     +     + R     L+  GLR S+  R G   +  
Sbjct: 213 VAGWRLASIPRFLPDADIARIIGACNGERRLRDRAIILLLVRLGLRASEVARLGFGDIDW 272

Query: 220 NIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFS 270
              SI+    G       +T E+ D  +  +                    + ++     
Sbjct: 273 RQGSIRLFGKGRREELLPLTQEIGDALLAYIERGRPALAVPSLFITEYAPLRPIDRITVK 332

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              K    + GV    K AH +R  +AT     G +   +      ++ +    Y K 
Sbjct: 333 CLVKRALKRGGVESHYKGAHILRHSAATAMLRHGVSLAHVGTVLRHRSPEMTAHYAKV 390


>gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++ T      K     A +NK    H +R   AT   + G    E+    G   V   
Sbjct: 97  HHVHETAIQRAIKQATYLAKINKHIGPHTLRHSFATHLLERGRDIREIQELLGHANVSTT 156

Query: 320 ETYTKGA 326
           + YT   
Sbjct: 157 QIYTHVL 163


>gi|56708875|ref|YP_164918.1| phage integrase family site specific recombinase [Ruegeria pomeroyi
           DSS-3]
 gi|56680560|gb|AAV97225.1| site-specific recombinase, phage integrase family [Ruegeria
           pomeroyi DSS-3]
          Length = 400

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 91/352 (25%), Gaps = 25/352 (7%)

Query: 9   PFVTKERTRHG-KIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKR-----EY 60
           P +    +  G K     ++  G  RR+ +      +   A                 + 
Sbjct: 29  PGLVLRISTSGTKTFCLHKRISGKMRRLTIGRFGVVSLAEARERVRKVLYEIETGRFEDR 88

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                +   TL  +I +Y +      +        E+   +           +I    + 
Sbjct: 89  TGVEVETKPTLGDVIPDYIE--KHAKVHNRDWKRKEALLAKFAA-LHVKRIDEIKRADVV 145

Query: 121 SGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              +    + P SA + L  ++ L  W V +  +  +P   ++   ++    R  T +++
Sbjct: 146 KACDLIHKSAPVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERVLTDDEL 205

Query: 180 QQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
               +       P      LL  SG R ++        L                  +  
Sbjct: 206 GALWTACDAEGYPFGDCMKLLILSGQRRAEVAEMRWTELDLEKRLWTLPSQRAKNGRQHT 265

Query: 239 DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRK 291
                 +         F            +        K +  KA    +     H +R+
Sbjct: 266 VPITDAMIDVLRRVPRFLGSDYVFTTTGKSPVSGFGRLKDRLDKALPEGTEPWIIHDLRR 325

Query: 292 FSATISADAGATAHELMATYGWKT---VDQAETYT--KGADRIRLGIKNSRR 338
             +T  A  G       A    KT      A  Y      D     ++   R
Sbjct: 326 TMSTNMAMLGVPQPVTEALLNHKTGVVSGVAAIYNVYSYTDEKCEALEQWNR 377


>gi|224807|prf||1202257C gene tnpA
          Length = 361

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/321 (8%), Positives = 71/321 (22%), Gaps = 65/321 (20%)

Query: 73  WLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
            LI    ++ K       + N+  ++  +   +             I  + +   V   +
Sbjct: 24  QLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLR 83

Query: 128 H----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +                  ++    L  +     +  R             + +     +
Sbjct: 84  YPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFL 143

Query: 172 RPWTKEDMQQ---------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               K   Q+                              + +L    +   GLR  +  
Sbjct: 144 HHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVL 203

Query: 211 RAGVQHLQNNIFS--------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---- 258
              ++ +                 +    +          +L+++        +      
Sbjct: 204 SLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEH 263

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                        + +         +    + G+  ++H +R   AT     G     + 
Sbjct: 264 DYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQ 323

Query: 309 ATYGWKTVDQA-ETYTKGADR 328
              G   V     TY   +D+
Sbjct: 324 KRLGHAHVQTTLNTYVHLSDQ 344


>gi|324992925|gb|EGC24845.1| phage integrase family site-specific recombinase [Streptococcus
           sanguinis SK405]
          Length = 411

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 102/357 (28%), Gaps = 47/357 (13%)

Query: 14  ERTRHGKIIYYFRKGH----GRRIRLPYPHE------STFIPAYMSALTGSTPKREYINS 63
                G+  Y    G+    G+RI+     +      +T   AY  A+       +    
Sbjct: 10  YIDDKGQFYYEVSLGNDKITGKRIKKKSRKDSNGKKFTTAKEAYTEAIRVKNDYLQSDGY 69

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
                 T +  ++      +   ++ ++  + +     +  + G    + IT + +++  
Sbjct: 70  S-NYDMTYEQFMNTVYLPYYQSEVSEHTYATRQPSLKIVFNRFGKKKLKDITVREVQNFR 128

Query: 124 ESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                     ++ + A     + R    +AV  +Y+  N  + V+   +       WTK 
Sbjct: 129 TWLLAKNGGNYSQAYAGLTFGTFRKSLDFAVDMQYLQKNVSMKVKSIPKGKSIAEYWTKN 188

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIK 225
           D ++  S              +L+           G     N            ++  + 
Sbjct: 189 DFEEVISNICISDFYEHLCFVMLWLYFCTGVRVNEGTAIWWNDIDFEKKELRVAHMLIMT 248

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---------------NDKQKMNATQFS 270
            +           D  ++++ +     +                     D   M  +  S
Sbjct: 249 NKNNWQRQNHTKTDAGLRIVTLDDDTIQILKAWKERQSELGKVNFVLSYDGNPMLKSTIS 308

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVD-QAETYTK 324
              K  A  A V    A G+R   A+    +  A+   +    G  + +   + Y  
Sbjct: 309 RIIKRYAKLANVPLIQAKGLRHSHASYLINELNASVLIVSKRLGHSSPEITLKHYAH 365


>gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           3_1_12]
          Length = 406

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 20/258 (7%)

Query: 90  NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139
            +   +E    Y ++ I+K     D     +    I          +    +S+I  L +
Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSSITRLKN 191

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ + + A+  +++  +P         +T+     T ++++   +      +    R  F
Sbjct: 192 LKKIIRIALENDWIKKDPFAYYRFKLEETD-PEFLTMDEIKIILAKEFTIKRVEQVRDVF 250

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
            F +++GL  SD      +HL  +      I+  +  T I   +P   + +  +      
Sbjct: 251 IFGVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 310

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMAT 310
                     ++  + + + K  A   G++K  S H  R   AT I    G +   +   
Sbjct: 311 AECTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVAKM 370

Query: 311 YGWKTVDQAETYTKGADR 328
            G       + Y +  D+
Sbjct: 371 LGHADTSITKHYARVLDQ 388


>gi|226951339|ref|ZP_03821803.1| integrase/recombinase protein [Acinetobacter sp. ATCC 27244]
 gi|226837861|gb|EEH70244.1| integrase/recombinase protein [Acinetobacter sp. ATCC 27244]
          Length = 340

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 81/325 (24%), Gaps = 22/325 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   R        R  + R              A +  L             +K   +
Sbjct: 1   MQKPVKRGNAWRIQVRYKNLRDSVTRDTARECEQWAAIRLLEMKAEYDPKKTQMQKPYFS 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126
              L  +Y     +     +          F     +  +    +I    ++   + R  
Sbjct: 61  FFVLCQKYYDEVGYKKRGKSFIKQQIKRETFKNYFGELAEKSIYEIKPIDVKKWRDKRLE 120

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------- 179
           K  P +  + +     +F +A  + ++  +   +      K                   
Sbjct: 121 KVAPGTVHRQMCLYTSVFNYAKNELFLIEDNPFAQVTKPTKPPARNRLISHSEIEIILKA 180

Query: 180 -QQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                    +  +  +A+   F + + +R  +       ++  +   +   K G    V 
Sbjct: 181 LNYKIGTRPQTPRQYVAWTFLFAIETAMRKGEILGITCNNIYPDYIHLPITKNGDARDVP 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294
           L      LL         +         N+  F + ++    K  ++     H  R  + 
Sbjct: 241 LSKEARDLL-----ILIPYMDRVKLIPHNSNSFRLIWQRAIGKTELHNVVHFHDTRHEAI 295

Query: 295 TISAD-AGATAHELMATYGWKTVDQ 318
           T   +        L    G + +  
Sbjct: 296 TRFVNKRKLPVEILAKVTGHRDIKT 320


>gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
 gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA]
          Length = 328

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  +    +        DF   ++              +I    E RK   +
Sbjct: 32  KSEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S    L++++ L+K             + + +  R  E +   + +D+++    +   S 
Sbjct: 92  SVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDSE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
              +       L Y+G+R  +      +H         F +   K+G  +   +    +K
Sbjct: 152 KKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLVK 211

Query: 244 LLAMTPIGKETFFINN---------------DKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            L          +  +               +   ++    ++  +        + S H 
Sbjct: 212 KLEEYRSYLMNMYSLDSKDLDEHYIFATSVLNNSPLSYRSLNVIIQDMGKLIEKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIR 330
           +R   AT  +  GA   E+    G       E Y   +     +
Sbjct: 272 IRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKK 315


>gi|294341251|emb|CAZ89653.1| putative phage integrase [Thiomonas sp. 3As]
          Length = 334

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 84/322 (26%), Gaps = 20/322 (6%)

Query: 15  RTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
             + GK      R+    R              ++  +           S      T   
Sbjct: 4   VVKRGKTFRAQVRRNGASR--SATFDTKAAAYVWVEQVEREIGAGVTGGSAAPAGATFAK 61

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           L+  YR            R         +     +    ++    + +  + R  + +P+
Sbjct: 62  LLERYRDDV--SEYKRGKRWEVTRINLTLRDAIAEVPLVRLAQPAVAAWRDRRLKQVSPA 119

Query: 132 SAIQFLTSMRVLFKWAVRQEYV----------AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           S  +    +      AV++ +              P    +R   + E  R       Q 
Sbjct: 120 SVQREWNLLSHACSLAVKEWHWLAENPFTGVRRPPPTPPRDRLATEAELDRILFALSYQP 179

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
            +   +   +   A  F + +G+R  +  +     +   + ++++ KT            
Sbjct: 180 GQRPSTISERIGAAAVFAVETGMRVGEIAKLTWADVAPTVVTVRSGKTAAATRRVPLSPV 239

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300
            + +                    +      ++     A + +   H +R  + T  A  
Sbjct: 240 AQTVLSGLKPDPVDLTARVFDLNTSQ-IDSLWRKAKKLAMIEDLHFHDLRHTAVTRLAKK 298

Query: 301 GATAHELMATYGWKTVDQAETY 322
                +L    G K +   + Y
Sbjct: 299 -LPILDLARMIGHKDLRMLQIY 319


>gi|291551327|emb|CBL27589.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 306

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 81/269 (30%), Gaps = 17/269 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132
           ISE+    H    A  +   + S      +   +   + I  + +    +      +  S
Sbjct: 15  ISEFATYLHVRENAKATIQKYTSDIKAFFQYIDED--KCINKEILLQYKDCLIQKYAINS 72

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++    ++      + +      ++P  +T+      +     + +      Q 
Sbjct: 73  VNSILAALNQFLEFLG-TGNLKVRRIKIQKQPFIQTQKELTRKEYQKLIYAAKKDGKEQL 131

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            L  E +  +G+R S+     V+ ++     I     G    + LP    + L       
Sbjct: 132 ALCMETIACTGIRISELKYFTVERIKRGKIEI--YNKGKYRKIFLPKLLRENLLNYCKEH 189

Query: 253 ETFFINNDKQK----MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305
                     K     + +      K    KAGV ++    H +R   A    +      
Sbjct: 190 GIKTGWVFITKTGKLKDRSNLWREMKNLQKKAGVAETKIFPHNLRHLFARSYYEDTKDLA 249

Query: 306 ELMATYGWKTVDQAETYTKGAD---RIRL 331
            L    G  +V+    YT   +   + R+
Sbjct: 250 GLADLLGHSSVNVTRIYTATTESVFQKRI 278


>gi|284006938|emb|CBA72212.1| phage integrase [Arsenophonus nasoniae]
          Length = 383

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 80/278 (28%), Gaps = 29/278 (10%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             ++EY        L+ ++   ++   + ++    +   R +T   I++ ++ +  T  +
Sbjct: 86  DYLNEYIMICKKRQLSPSTINGYKKCINALME-LHNIQVRSLTPAVIKNWIQRKNTTLKT 144

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188
               L+ +R     A+    + INP   V   +  +      +   +        E    
Sbjct: 145 IRNQLSFLRSAIDEAITDGLININPVSQVTAARYHSNNTSKESIYVIDPLSPSEVELLLS 204

Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------------QKTGTII 233
                Q    F+F + +GLR S+ C      +                     +      
Sbjct: 205 ATKYKQWENLFQFAINTGLRSSELCALRWDDIDFVQRLAYISSASVVGIIKGTKTKSGTR 264

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNKS- 285
            VEL D  +  L               +       +          +     KAG+    
Sbjct: 265 KVELNDQAILALQNQKPFTFLKTKEIFEDPKTKKPWAGADAIRKKAWMPTLRKAGIRYRN 324

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
            +  R   AT     GA    L A  G K  +     Y
Sbjct: 325 PYQTRHTFATRHISQGANLFWLAAQMGHKGPEMLFRHY 362


>gi|237712395|ref|ZP_04542876.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|237726584|ref|ZP_04557065.1| integrase [Bacteroides sp. D4]
 gi|229435110|gb|EEO45187.1| integrase [Bacteroides dorei 5_1_36/D4]
 gi|229453716|gb|EEO59437.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 267

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 2   VTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 57  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISNADYKFLKTQLKADGYDE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H+Q     + ++           +      K L    
Sbjct: 114 YFIVWFMAATGARVSELLHIKAEHVQIGHLDLYSKGGKIRRLYIPKNLRTEAAKWLKEIG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AGV    + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEEAGVAKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|258539026|ref|YP_003173525.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150702|emb|CAR89674.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 375

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/373 (8%), Positives = 93/373 (24%), Gaps = 49/373 (13%)

Query: 16  TRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R  K  Y           + +               + +     +   ++       TL
Sbjct: 6   KRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERLHNRGANLDL---NKITL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
                ++ +    G  +  +   +++   Q++   G+  + + I+    ++ +       
Sbjct: 63  IDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQAFINEFGKKR 122

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQF 182
           +  +  +    +R +   AV  + +  N   +        +            ++ +   
Sbjct: 123 AKDTVSKLNGYVRSMADSAVDDQVIYTNFTHNVVLTGNEGQAGIIKYLQVNDLRKLVNYC 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
             F                +G R S+       H+      +   +T             
Sbjct: 183 LEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAATK 242

Query: 236 ---------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                +     + L       K+  F +     +++T  +   +
Sbjct: 243 NKSSVRDIDITRELADLLLRLKKEQQEIYLAQGYRDSKQLLFRSIRHNMLSSTAINKDLR 302

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RI 329
                  ++   + HG+R    +         + +    G       +  Y    +  R 
Sbjct: 303 TIQKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQRK 362

Query: 330 RLGIKNSRRISSV 342
               +  + +S +
Sbjct: 363 EQVSQTLQALSRL 375


>gi|15799949|ref|NP_285961.1| putative integrase for prophage CP-933H [Escherichia coli O157:H7
           EDL933]
 gi|15829525|ref|NP_308298.1| integrase [Escherichia coli O157:H7 str. Sakai]
 gi|168763485|ref|ZP_02788492.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217324265|ref|ZP_03440349.1| integrase [Escherichia coli O157:H7 str. TW14588]
 gi|12513018|gb|AAG54569.1|AE005202_7 putative integrase for prophage CP-933H [Escherichia coli O157:H7
           str. EDL933]
 gi|13359728|dbj|BAB33694.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
 gi|189366394|gb|EDU84810.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320486|gb|EEC28910.1| integrase [Escherichia coli O157:H7 str. TW14588]
 gi|326338749|gb|EGD62568.1| Phage integrase [Escherichia coli O157:H7 str. 1044]
          Length = 324

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 26/237 (10%)

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +  + ++    L+ ++ L + A  +E+  ++    ++ P+ K + +R     + Q+    
Sbjct: 76  KPASVATKATHLSFIKALLR-AAEREWKMLDKAPIIKVPQPKNKRLRWLEPHEAQRLIDE 134

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241
             E  +     EF L +GLR S+      Q +         + +  K+   I V L D  
Sbjct: 135 CPEPLKS--VVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTA 192

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ------------FSIWFKAKATKAGVN-KSAHG 288
            ++L         +     +                    +  +KA   +AG++    H 
Sbjct: 193 CRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHD 252

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345
           +R   A+    AG     L    GW++++    Y        L   +    +  +DS
Sbjct: 253 LRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAH------LAPNHLTEHARQIDS 303


>gi|168236933|ref|ZP_02661991.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737027|ref|YP_002117176.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194712529|gb|ACF91750.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290003|gb|EDY29362.1| phage integrase family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|309704515|emb|CBJ03864.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 365

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKAARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|256019696|ref|ZP_05433561.1| phage integrase family protein [Shigella sp. D9]
 gi|332103179|gb|EGJ06525.1| phage integrase [Shigella sp. D9]
          Length = 365

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 101/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T++ L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRDLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKPVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPQKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|293398412|ref|ZP_06642590.1| integrase/recombinase, phage associated protein [Neisseria
           gonorrhoeae F62]
 gi|291610883|gb|EFF39980.1| integrase/recombinase, phage associated protein [Neisseria
           gonorrhoeae F62]
          Length = 387

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 95/366 (25%), Gaps = 54/366 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           +TK R   G+ +Y  +   G++    +    TF    ++   G   + E    P      
Sbjct: 7   ITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKR 66

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
            + K  TL   + +Y         +       +     ++    G     K+        
Sbjct: 67  GKVKMMTLSEAMRKYLNETLGAGRSK------KMGLRFLMEFPIGGIGIDKLKRSDFAEH 120

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP--------------- 157
           V  R+             S+A+Q L  +R + K A     + I                 
Sbjct: 121 VMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNM 180

Query: 158 -CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              S  R +  T            +            L     +Y+  R  + CR     
Sbjct: 181 VAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDD 240

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQK 263
              N  +   +           +    +L M                      I +    
Sbjct: 241 WHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVP 300

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N    S  +       G+ +   H +R  +AT  A+ G T  ++         +  + Y
Sbjct: 301 CNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRY 360

Query: 323 TKGADR 328
                R
Sbjct: 361 VSVRKR 366


>gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705]
 gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705]
          Length = 382

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/379 (12%), Positives = 111/379 (29%), Gaps = 48/379 (12%)

Query: 11  VTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K + + G + Y            R+  +             S L        Y  +  
Sbjct: 3   IKKVKLKSGAVRYRVTVNAGLVAGKRKNIVRNVQSMQKARLLESKLKLDVANGLYDENDT 62

Query: 66  KKP-TTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             P  T   L +++       ++  ++   + + + + +I   G      I T  I+S V
Sbjct: 63  TPPVQTFSDLYNQWWPIY-VQTVEGSTAYKTKQLFHNHLIPMFGSKTLTAIKTGSIQSAV 121

Query: 124 ESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----------KRKTEGI 171
              + T + A  +    ++ +  +AV+ +Y+  NP   VE P               +  
Sbjct: 122 SQWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVGSGKSPVYWDNKQVA 181

Query: 172 RPWTKEDMQ-----QFKSFWSEGSQPRLAFEFL------------------LYSGLRCSD 208
           R  T  D                +  R                          +GL   +
Sbjct: 182 RFLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKE 241

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           S +            +  + T  +          K++++           + ++++   +
Sbjct: 242 SIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINR 301

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            + W K       +    + HG+RK   T    +G     +    G  T D     Y  G
Sbjct: 302 PNKWLKDIIEANHLSPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYA-G 360

Query: 326 ADRIRLGIKNSRRISSVVD 344
            ++     +   +++  ++
Sbjct: 361 MNQS-DAREGIDKLAEYME 378


>gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA]
 gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA]
          Length = 406

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 74/302 (24%), Gaps = 18/302 (5%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103
             AY++A       +   +             + + K       ++ +        + + 
Sbjct: 86  REAYVTAEMVRNAYQGVGSEYETLIKAFDKDCANFLKRVG-KDRSIGTYKVMVRARNYVA 144

Query: 104 RKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153
                     D    ++T   I+                +      ++ +   A     +
Sbjct: 145 AFIKSFYRRTDMSMLELTPDFIKEFAAYLTAERGLKNATIWLNCMWLKGVVMRAHYNGLI 204

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSC 210
             NP           +     T++++++  +           R  F F  ++ L   D  
Sbjct: 205 PRNPFAQF-HISPNVKEREYLTEDEIKRIMAHEFNNPTLALVRDLFIFACFTALSFVDMK 263

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETFFINNDKQKMNATQF 269
                 +                 V      + + L +    K          K+N    
Sbjct: 264 ELTTDEIVEVNGEKWILSKRHKTNVPFQVKLLDIPLQIIERYKYLSEDRLVFGKINYWTM 323

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               K    + G+ K  S H  R    T++   G     +    G   +   + Y K   
Sbjct: 324 CKQLKKVMAECGIEKQISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITT 383

Query: 328 RI 329
           + 
Sbjct: 384 QK 385


>gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium]
          Length = 161

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
             +  +     +  +       +Q ++ +     FK    K  + K+   H +R   AT 
Sbjct: 73  WAWQYVFPSKSLSVDPRTDQKARQHVSPSSLQKVFKEALRKTRIPKNAGPHTLRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKG 325
               G     +    G K +     YT  
Sbjct: 133 LLQDGYDIRTIQDLLGHKEISTTMIYTHV 161


>gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis
           3_1_45B]
          Length = 331

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 92/300 (30%), Gaps = 38/300 (12%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---------E 124
             + Y    H    + +SR +  S  +   R  G  D        +R            +
Sbjct: 39  AAAAYLAELH----SGDSRRAVRSRLNIAARWLGAADAFSCEWGRLRYVHVLGFMHALAD 94

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQ 180
                 +S   +L+++R + + A R   + +     ++  K+         R    ++ Q
Sbjct: 95  KEGLAAASVNAYLSALRGVAETAWRLRQIDLTTYAEIKAVKQLRVHREPTGRALQADESQ 154

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234
           +  +   E +     + R     LL  GLR ++     +++L+ +  +++          
Sbjct: 155 KLLAAVDEDTGPKAVRDRALIALLLGCGLRRAEVTTLRMENLERSSGTLRVIGKGNKERK 214

Query: 235 VELPDGFMKLLAMTPIGKETFFINND-----------KQKMNATQFSIWFKAKATKAGV- 282
           V L     + +      + T                    ++        K     A + 
Sbjct: 215 VFLTPEVAQKVNAWLDLRGTEPGWLFGRLTKVGQLILTNPLDPASIGRVVKHAQDLAKIA 274

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             + H +R+  AT           +    G   V     Y + ++     ++ + +++ +
Sbjct: 275 PITTHDLRRTFATRLLAKNVDIVAVKNLMGHANVSTTAKYDRRSEE---ALQQAAQLAEL 331


>gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574]
 gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574]
          Length = 343

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 42/313 (13%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKH----IRS 121
            +S+Y        ++ ++  S+   FD ++    +           + +T       +  
Sbjct: 14  FLSDYL--MKERGVSHHTLRSYAYTFDLMLDYMLEVKKIPAERIELKHLTRDCTTGFLDW 71

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKED 178
               RK T ++    L ++    K+   ++   I     +   +   + +  I   + E 
Sbjct: 72  LQTERKCTDNTRNARLAAIHAFCKYLQYEDIKRIGCWQQIMTIKAKHKVSGTISSLSIEA 131

Query: 179 MQQFKSFWSEGS---QPRLAFEFLLY------------SGLRCSDSCRAGVQHLQNNIFS 223
           M+   +     +   +  LA   LLY            +    S    A V         
Sbjct: 132 MKTLLAEIPTDTMQGRRHLAILSLLYESGARVQELINLTPNDLSLELPAYVTLFGKGRKK 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                   ++++         L +    K   F NN   K++ +  +      A    V 
Sbjct: 192 RVVPLQKRLVSIMRLYLAEHKLDLPGREKRHLFYNNRGAKLSNSGIAHIITLYANDVRVK 251

Query: 284 K--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                    S H  R   A     AG     +    G  ++   E Y     + +     
Sbjct: 252 HPGLLPDKISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKR--DA 309

Query: 336 SRRISSVVDSDDP 348
             +  + +  + P
Sbjct: 310 LEKAYANITPERP 322


>gi|165872129|ref|ZP_02216768.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167633663|ref|ZP_02391987.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|167640976|ref|ZP_02399233.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|170688720|ref|ZP_02879924.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|170705688|ref|ZP_02896151.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|177654292|ref|ZP_02936221.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190565992|ref|ZP_03018911.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227813155|ref|YP_002813164.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229600633|ref|YP_002868171.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
 gi|254683634|ref|ZP_05147494.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721470|ref|ZP_05183259.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. A1055]
 gi|254735976|ref|ZP_05193682.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743870|ref|ZP_05201553.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Kruger
           B]
 gi|254754354|ref|ZP_05206389.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str. Vollum]
 gi|254757954|ref|ZP_05209981.1| prophage LambdaBa02, site-specific recombinase phage integrase
           family protein protein [Bacillus anthracis str.
           Australia 94]
 gi|164712076|gb|EDR17614.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0488]
 gi|167511026|gb|EDR86415.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0193]
 gi|167531069|gb|EDR93756.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0442]
 gi|170129228|gb|EDS98092.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0389]
 gi|170667236|gb|EDT17995.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0465]
 gi|172080782|gb|EDT65863.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0174]
 gi|190562911|gb|EDV16877.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis Tsiankovskii-I]
 gi|227007263|gb|ACP17006.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. CDC 684]
 gi|229265041|gb|ACQ46678.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus anthracis str. A0248]
          Length = 322

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 80/293 (27%), Gaps = 34/293 (11%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVE 124
           K L+ ++         A ++   +      I+    +   +    ++T K IR+     +
Sbjct: 19  KSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIFQ 78

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               + +     ++++R   ++    +       +           +R  T    +Q + 
Sbjct: 79  ELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEW 138

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              E     +  +++L + L  S    A    +        T++  T I         +L
Sbjct: 139 LIDE---LIVQEKYMLATYLALSYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRL 195

Query: 245 LAMTPIGKETFFINNDKQKMN------------------ATQFSIWFKAKATKA------ 280
                + K      N + K                     + F+ W K  A         
Sbjct: 196 YYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNYWCKIFAKMLYEKEGK 255

Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               + H  R          G    +L +      +   ++Y K      +  
Sbjct: 256 EFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 308


>gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 72  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 131

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326
           T    +G     +    G   V     YT   
Sbjct: 132 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 163


>gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
 gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter
           upsaliensis RM3195]
          Length = 314

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 79/290 (27%), Gaps = 35/290 (12%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126
           L + +  Y       + + N+ + +E   ++    S D     ++++I + +I + +   
Sbjct: 12  LDFWLEAYFSHFKALNYSNNTIMLYERVLNEFREYSLDFQDEIEFKEIKSAYILNFLGYL 71

Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------ 171
           +    +  +         +L  +   F +             +  +   + E        
Sbjct: 72  ETKSKNINKKLSKKTKLTYLRVITSFFTFINENNEDLFEFSFNFSKLNTRNEKREEKLEY 131

Query: 172 -------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFS 223
                  R     + Q+ K       +     + +LY+GLR S++ R       ++    
Sbjct: 132 LNDDEIQRLINVLEQQKIKKDDYASFRNAFLIKLMLYAGLRISEALRVRLCDFSEDEEDM 191

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKA 275
           +K +        +        +       +      D             +  F I  + 
Sbjct: 192 LKIRIFAKGAKEQFAYAKKDYIDDELDYFKEHLKEQDYIMQTNTGKLLNRSNAFIIVNRI 251

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            A      K  H +R   A            +       ++     Y K 
Sbjct: 252 YAKALINKKGLHLLRHSLAMKLTSQNINLVVIQKILRHTSMQTTTIYAKA 301


>gi|237736397|ref|ZP_04566878.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421439|gb|EEO36486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           mortiferum ATCC 9817]
          Length = 255

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 80/242 (33%), Gaps = 7/242 (2%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           I K  +   + I  +H++  +++     ++  +       +F +A++ + +  +    V+
Sbjct: 14  IEKLHNMKIKDIKARHLQEAIDNCSKGQATKKKIKFLFGQMFAYAMQNDIITKDYSEFVD 73

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
             K   E  R        +      +  +       ++YSG R  +      +++     
Sbjct: 74  IGKASEESKREPFSNKEIELLWKHIDDIEFIDTILIMIYSGFRIGELLELETKNIDLVNM 133

Query: 223 SIK---TQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKA 277
           ++      + G    V +      L+         +       K+      +   F    
Sbjct: 134 TMTGGLKTEAGKNRLVPIHPKIFPLIEKRYNKDNQYLIINFKGKKMKYDNYYKEKFIPIM 193

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLGIKN 335
            +  +    H  R   AT+ ++A A A  +    G ++    E  YT    + +R  ++ 
Sbjct: 194 EQLNMEHRPHDCRHTFATLLSNANANATAIKKMIGHESYATTEKIYTHKDIEELRKNVEL 253

Query: 336 SR 337
            +
Sbjct: 254 IK 255


>gi|227534618|ref|ZP_03964667.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187719|gb|EEI67786.1| integrase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 389

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/386 (10%), Positives = 112/386 (29%), Gaps = 57/386 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           ++R ++ +    +    G+++   +        A  +A       +   +  +     L 
Sbjct: 5   RKRGKYWEYRVKYTDSAGKQLVASHGGYRLKSSAQDAAEAVEDDLKRGGDPSKAGTLFL- 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------- 125
               ++  +   G  ++N+   +      +  +    +   I     +  +         
Sbjct: 64  DYWDQWIDAYKSGDKSLNTEYRYTLLRKHLKSRFDGRELGSIRPIEWQRFLNDFAAGKDR 123

Query: 126 ---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWT 175
                    R+ +     +  + +R + K A+    +  +     +    ++   ++   
Sbjct: 124 KKETTRKGPRERSKDIVSKMNSYVRSMVKAAINDRLLFSDFTFGAKVGGIRSGSKVKVLD 183

Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           +ED  Q KS  +E +  R    LA      +G+R S++       +      I   ++  
Sbjct: 184 QEDFSQVKSQAAEKASYRSIGALAVYLGAMTGMRVSETLALTWADIDTINNVIHVTRSWD 243

Query: 232 I---------------ITVELPDGFMKLLAMTPIGKE-------------TFFINNDKQK 263
                             +E+    +KLL      +                  N     
Sbjct: 244 HQYGTGFKPTKTEASIRDIEVSPAVIKLLERIHQEQMAAYLRTGYRDADQMIMRNQWHTV 303

Query: 264 MNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  T  +       + AG+ K    + HG+R    +     G   + +    G   +   
Sbjct: 304 ITDTACNKALAILQSDAGIPKEKQITFHGLRHSHVSYLISQGIDIYYISKRLGHSDITIT 363

Query: 320 ET-YTKGAD--RIRLGIKNSRRISSV 342
              Y    D  + +  +K +  +  +
Sbjct: 364 MRVYGHLLDSQKKKEALKATAAMDRL 389


>gi|255102296|ref|ZP_05331273.1| phage integrase [Clostridium difficile QCD-63q42]
          Length = 388

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 96/360 (26%), Gaps = 50/360 (13%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+ IR  +  ++         L     +    +       TL+     +        L 
Sbjct: 30  DGKPIRKEFYGKTQ--KEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFKYRIKDLK 87

Query: 89  VNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVL 143
             S   +ES +   I+     +     +   HI+        +     +  Q  T ++  
Sbjct: 88  PKSFERYESIYRNYIKDTDLVNVKLNDLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTC 147

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
              A +Q  +  N C  V  P  K E        + Q+      +G +  + F   L +G
Sbjct: 148 LSEAEKQGLIQRNYCTMVNIPVEKKENKIEILTLEQQKSFIKAIDGHKLEVLFLLALGTG 207

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           LR  +        +     ++  ++T         +G  +L  +    K +         
Sbjct: 208 LRLGELLGLKWFDINFKNSNLTVKRTLQRTYFIDKNGDRELKVLEQEPKTSNSYRTVPIP 267

Query: 264 MNATQ-------------------FSIWFKAKATKAGVNK-------------------- 284
            N                      +         K GV                      
Sbjct: 268 KNILNKLKEHKVSQNTDILKAGELYRNDNYVFCNKLGVPIDDKRPLRNLKSILNSLDIEP 327

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSV 342
              HG+RK  AT   +       +    G   +      YT+  +  +  ++   ++  +
Sbjct: 328 IKFHGLRKTYATRLFENNVPPKAVQVLMGHYDISITLNIYTQVMEDKK--VEAVEKLDKI 385


>gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 7/125 (5%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L        G   +       +                   L++ P   E    +  +  
Sbjct: 44  LLHRQDLARGGGEVYLPFALSRKYPNAKRAWSWQYVFPAAKLSVDPRSHEVRRHHVQE-- 101

Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                     K    +AG+ K  S H +R   AT   + G+    +    G K V     
Sbjct: 102 ---KNLQNAVKIAVREAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMI 158

Query: 322 YTKGA 326
           YT   
Sbjct: 159 YTHVL 163


>gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 271

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 73/260 (28%), Gaps = 31/260 (11%)

Query: 100 DQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYV 153
           +      G     +   +T  H+ +     +H     ++  + L ++  LF   +    +
Sbjct: 1   EDFCSFIGLASADEFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAI 60

Query: 154 ---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRC 206
                   +   R +              +       E    G + R     LLY GLR 
Sbjct: 61  AGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRR 120

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVELPDGFMKLLAMTPIG 251
            ++    V  +Q        +  G                 I   L +    L       
Sbjct: 121 EEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPL 180

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308
                       + A        A A KAG+       HG+R  +AT + +  A   ++ 
Sbjct: 181 FMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQ 240

Query: 309 ATYGWKTVDQAETYTKGADR 328
           A  G   +   + Y +  +R
Sbjct: 241 AWLGHANISTTKIYDRRENR 260


>gi|322688910|ref|YP_004208644.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460246|dbj|BAJ70866.1| phage integrase [Bifidobacterium longum subsp. infantis 157F]
          Length = 418

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 105/387 (27%), Gaps = 67/387 (17%)

Query: 17  RHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           + G   +    G       RR                 A      +   +  P  K   L
Sbjct: 19  KDGSWEFRREVGRDPATGKRRYVSAKGRTKAGARERFDARIAEMERTGLL--PGAKSPYL 76

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129
           K     + +     ++   +  +        +   G      +T  H+R  +        
Sbjct: 77  KDYAERWLEEYRL-NVKPTTYRTRAGRIHACMEVIGCVRLTDLTPDHVRQCMRVLSKRLA 135

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           PS+      S++++   A  +E + ++PC  V  P+ +    R  + +  +Q        
Sbjct: 136 PSTLKDHFVSLKMMLDQAELEELIPVDPCRRVRPPRVEPTETRILSPDQPKQLIEAVPNR 195

Query: 190 SQPR--------------LAFEFLLYSGLRCSD--------------------------- 208
              R              L FE    +G+R  +                           
Sbjct: 196 GAKRRGPALTVDVDESWMLLFELAFAAGMREGERYALMPYELEQRDGVPGINVQQQIQQY 255

Query: 209 --------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-----GKETF 255
                         +HL   ++    +       V +     + L           +E  
Sbjct: 256 GKPEDAVIPAWLKAEHLYGILWLTTPKTHAAHRFVPISTSLWQRLWARVKRLDIGPRELI 315

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314
           F N+    + ++     +      AG+   + H  R ++A+++A A        A  G  
Sbjct: 316 FTNSRGNPVRSSTERHNWNKALKAAGLPPVTIHSARHWTASMTARANMPDDARTAIMGHT 375

Query: 315 TVDQAETYTKG--ADRIRLGIKNSRRI 339
           ++     YT    A   +L  +    +
Sbjct: 376 SISMTNHYTHRDTASLAKLLGQAIPDL 402


>gi|269102609|ref|ZP_06155306.1| hypothetical protein VDA_002035 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162507|gb|EEZ41003.1| hypothetical protein VDA_002035 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 387

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 97/339 (28%), Gaps = 24/339 (7%)

Query: 10  FVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMS-----ALTGSTPKREYI 61
            +    T   KI +++R    +   RIR+     ++   A         L  S       
Sbjct: 28  GLVVRITPQAKIYFHYRCRFNKKSLRIRIGKYPVTSLKEARRMHKLMMELRESGRNPNIA 87

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            +   +  TL   ++ + K      L   ++  + S+ +  +I    + +   I  +   
Sbjct: 88  ITGELEFITLDDCVAYWLKHY-VPQLKEGTQALYRSFANNYLIGAFPERNVETIPAREWM 146

Query: 121 SGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER------PKRKTEGIRP 173
             +++     P +A    T +R    +   +  +       ++R      P+  T     
Sbjct: 147 QWLDTISLDKPKTANSLFTKLRSCLNFCKSKFIIEKTDLDRIKRQHVGKAPEVGTRVPTF 206

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------ 227
                +          S  +   +  +  G R S+   A   H                 
Sbjct: 207 SELSMIWLAIERSRASSSNKALHQLTMLWGNRLSELRLARRSHFDMEAGIWTVPKELSKT 266

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286
            T     +      +    M       F   +  + +  +  + + +       + +   
Sbjct: 267 NTPIRRPIPTKARAILERVMATYDDVLFPGGDLDKPITISAANRYIRRIRDGLPIEDWRT 326

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           H  R+  +T +++ G   H +    G +       Y K 
Sbjct: 327 HDFRRSLSTGASELGVMPHVVEKMLGHELGGVLSVYNKH 365


>gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319]
 gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319]
          Length = 409

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 20/252 (7%)

Query: 96  ESYFDQIIR---KSGDFDYRKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAV 148
            ++    I+   K  D  + ++T + I    +  + +     S+     T ++++ + A 
Sbjct: 141 RTHLQNFIQRKYKVADLAFSQLTEQFIYDFQQYFMGTCGFQESTFYNAATFLKMVCRLAY 200

Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSG 203
           R+           +  K   +  +   +E + + K    E         R  F F  Y G
Sbjct: 201 REGLADTLLFDKAKISKGDNKLPKALDREALDKLKVLRFEDLEEEMETARDIFLFACYVG 260

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-- 261
               D       HL  +       K             +KLL       E F  +  +  
Sbjct: 261 AAYCDLMELSKSHLVRDDEGSLWLKFN--RQKTGVLCRVKLLPEAIRLIERFHSDERETL 318

Query: 262 -QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVD 317
              +    +    KA   +AG+    + H  R   AT+   + G     +    G   + 
Sbjct: 319 LPFIKYKNYQSCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNIS 378

Query: 318 QAETYTKGADRI 329
             E Y K   + 
Sbjct: 379 MTERYAKVTPQK 390


>gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium]
          Length = 158

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|121594884|ref|YP_986780.1| phage integrase family protein [Acidovorax sp. JS42]
 gi|120606964|gb|ABM42704.1| phage integrase family protein [Acidovorax sp. JS42]
          Length = 400

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 114/384 (29%), Gaps = 42/384 (10%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYP----HESTFIPAYMSALTGST--- 55
            +     +    T  G I + +    HGR+  + +        T   A            
Sbjct: 18  KVNDRDGLYVAVTAAGAISFRYNYSIHGRQETITFGRYGVGGITLAEARERLGEAKKMIA 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                  ++    +  K   T      ++ +      +A ++R    S +++ +  K G+
Sbjct: 78  AGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MADSTRDMRRSVYERELKPKFGN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++      P++A+     +  +F+WA+ +     NP   V     
Sbjct: 135 QKLVEITHEDLRALTDAIVERGAPATAVHVREVVLQVFRWAIERGQKVENPAELVRPTTI 194

Query: 167 KTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R           M Q+          R A + LL + +R S+   A    +  + 
Sbjct: 195 AKFEPRDRALTPDEIGLMYQYMERIGTAPSIRAAAKLLLLTMVRKSELTNATWSEINFSD 254

Query: 222 F-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIW 272
                 ++        L     + L +                   +    M++   +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDLPMSSATLNQV 314

Query: 273 F---KAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
                  A K G        H +R+ ++T+  +AG     +      +       Y K  
Sbjct: 315 LTLTYRLAQKEGKSLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKAE 374

Query: 326 -ADRIRLGIKNSRRISSVVDSDDP 348
             ++    +++   +        P
Sbjct: 375 YREQRTAMLQDWADMIDEWTLRRP 398


>gi|187731694|ref|YP_001879477.1| prophage integrase [Shigella boydii CDC 3083-94]
 gi|187428686|gb|ACD07960.1| prophage integrase [Shigella boydii CDC 3083-94]
          Length = 413

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/349 (11%), Positives = 96/349 (27%), Gaps = 32/349 (9%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTG---- 53
             +       G  ++   Y+R  + +R  +                   Y + +      
Sbjct: 29  GGLFLVIKPSGSKLWRFNYYRPSNKKRTLISLGSLDEVSLADARKRRSEYRTLIAAGTDP 88

Query: 54  -STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
               +++     R++  T + + + + +     +LA N+           +    G+   
Sbjct: 89  QEYERQKREAEARRQGNTFENVAALWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +T +     +   K   +  +  + L  +  +  +A     + IN   +V +      
Sbjct: 149 DTLTARRFVEILTPIKARGNLETLKRVLQRINEVMDFAANSGMIDINTAANVRKTFPSPT 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T             S  S   Q RL  E+ L +  R +++  A  + +     + 
Sbjct: 209 KKHMPTIRPEQLPQLMHDLSIASIERQTRLLIEWQLLTATRPAEASAARWEEINLEAATW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATK 279
                   +    +     + +A+    K                          A   +
Sbjct: 269 TIPAGRMKMRRDHVIPLCAQAMAVLEAMKPISARREHVFPSLKNPVQPMSSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + + G     + A       ++    Y + 
Sbjct: 329 MGYTGVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|256849956|ref|ZP_05555387.1| integrase [Lactobacillus crispatus MV-1A-US]
 gi|256713445|gb|EEU28435.1| integrase [Lactobacillus crispatus MV-1A-US]
          Length = 407

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 114/387 (29%), Gaps = 59/387 (15%)

Query: 11  VTKERTRHGKIIYY--FRKG-HGRRIRLPYPHES---TFIPAYMSALTGSTPKREYINSP 64
           +   + ++G  ++   ++     +                      L      +      
Sbjct: 1   MFIRKLKNGNYVFRESYKNPITNKWHETSCTFGKNNRETRKQAQIILDKRIRTKLIELES 60

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGV 123
            +   T   L ++Y + A    LA N+    ++  ++I  + G     K +T + I   +
Sbjct: 61  GETDITFAELKNKYLEIAQ-KQLAYNTYYRKKTTLNKISSEWGKDTIAKNVTPQFINKYL 119

Query: 124 ESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI------- 171
           ++       +  ++   + + + V+++  ++  Y++ NP   V+   +            
Sbjct: 120 DNMLYGEHPYANATVNSYKSCIGVVYEMGIKYGYISNNPIDKVKISWKSESLKKREEIEN 179

Query: 172 RPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226
           +     ++++      E  +P L   FE++  +G+RC ++     +++  +         
Sbjct: 180 KYLDDNELERILKDCDERKRPDLKEFFEWMYLTGMRCGEAAAIQKKNILQDKDGTWFARV 239

Query: 227 -----------------------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                                  +       V LP   + +       K+          
Sbjct: 240 RGSLITIRNEPDPSKRHIKTKNAKTYAGDRDVTLPPEAITIAKNHCEDKKANDFIFTNNW 299

Query: 264 MNATQ------FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315
             +         +   K+   +  + K    H  R    +  A+ G   + +    G   
Sbjct: 300 KTSEGYFNNSKLNKVLKSIMKRQKIKKKLVTHIFRHTHVSKLAEMGVPLYVIQQRVGHGD 359

Query: 316 VDQAET-YTKGADRIRLGIKNSRRISS 341
                  Y       ++    + ++ +
Sbjct: 360 SRITRRIYLHIT--KKVKKDLANKLQN 384


>gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA]
          Length = 332

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 104/324 (32%), Gaps = 30/324 (9%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQII 103
              +  +   TP ++          TL+    ++        LA  +R  +  +   +I 
Sbjct: 10  EKRLIEMETWTPPQDRAKKAAASAITLEEYTRKWLVE---RDLADGTRDLYSGHAERRIY 66

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVE 162
              G+    ++T   +R+          +A +     +R +   AV  + +A NPC   +
Sbjct: 67  PVLGEVAVTEMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCRIEQ 126

Query: 163 RPKRKTE---------------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
           +   + +                   +         +    G    L  + +++ G+   
Sbjct: 127 KAADERDVEALTPEELDIVAAEIFEHYRIAAYILAWTSLRFGELIELRRKDIVHDGMTMK 186

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--------NN 259
              R G   + N I     +   +   V +P    +++      +               
Sbjct: 187 LRVRRGASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTT 246

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              +++ + F+   K    K G      H +R   AT +A AGAT  ELMA  G  T   
Sbjct: 247 QGNRLSKSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRM 306

Query: 319 AETYTKGADRIRLGI-KNSRRISS 341
           A  Y   ++     I +   +++ 
Sbjct: 307 AMKYQMASEARDEAIAEAMSKLAK 330


>gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium]
 gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium]
 gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium]
 gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium]
 gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium]
 gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium]
 gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium]
 gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium]
 gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium]
 gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium]
 gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium]
 gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium]
 gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium]
 gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium]
 gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium]
 gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium]
 gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium]
 gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium]
 gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium]
 gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium]
 gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium]
 gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium]
 gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium]
 gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium]
 gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC
           3626]
          Length = 280

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 78/273 (28%), Gaps = 26/273 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKH--- 128
           ++E+ +      L + +   +E      ++      D +   +    I+  ++  K    
Sbjct: 6   LNEFIRYEFDRGLTLETTKRYEREIKCFLKFIKIKTDKELSDLLEDEIKMCLKKYKMNLE 65

Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
                PS+    +  +    ++   +  V        ++P            E       
Sbjct: 66  KEKYKPSTINGKIIIINKFLRFC--EIEVKEKCVKIQKKPYITNVL-----SESEYLRLL 118

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +  + ++    L  +GLR S+     ++ + N    IK +              +KL
Sbjct: 119 NVCDNFRDKVIIRVLANTGLRVSELLSLEIREIYNGDIQIKGKGA-KYRECFCSSEIIKL 177

Query: 245 LAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296
           +            ++      K  +     +      A KA + K     H +R      
Sbjct: 178 IKQYIETERLGTDKSKVFTGRKGALKRQAINKMLFKYAKKAHIKKEKAHPHSLRHLFGKN 237

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A+   +   +    G + +     YTK     
Sbjct: 238 LAERRVSLDVIKTFMGHEDIRTTAIYTKRTREE 270


>gi|237742003|ref|ZP_04572484.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
 gi|229429651|gb|EEO39863.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
           4_1_13]
          Length = 290

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 23/279 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSG 122
           +   ++  I ++     +  +   N+ IS     +  +      +     K+    I+  
Sbjct: 3   EKINIEKAIKDFIYYLEFEENKKNNTVISIRKDLNNFLEYLNKKNIITLDKLDELIIKEY 62

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   K    + S+  + L+S++  +K+ +          + +E  K   + I+    +++
Sbjct: 63  LTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI 122

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  +    E S    + RL FE L  SG+  ++    G  +       I   K     T+
Sbjct: 123 KILREEMKEESFNVLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLLKNKISRTL 182

Query: 236 ELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  ++                     F+NN   ++            + KA + K 
Sbjct: 183 YFSQTCKEVYLKFLIAKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSEKANLQKE 242

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            S + +R          G     L      K++   + Y
Sbjct: 243 VSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|206975052|ref|ZP_03235966.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
 gi|206746473|gb|EDZ57866.1| prophage lambdaba02, site-specific recombinase, phage integrase
           family [Bacillus cereus H3081.97]
          Length = 319

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 74/290 (25%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + +   +T K IR+     +  
Sbjct: 21  LVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHEHFENKNLIDLTRKDIRNLSIVFQEM 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 81  GMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREITFITEDQINWLI 140

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T +         +L  
Sbjct: 141 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 197

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------------------- 285
              + K        + K       +       +  +NKS                     
Sbjct: 198 NHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERRRLNKSVFNYWCGIFAKMLNEKEGKDF 257

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H  R          G    +L +      +   E+Y K      + 
Sbjct: 258 KMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 307


>gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium]
          Length = 164

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +      G +       +  +     S W K    KAG+ K  +AH +R   AT 
Sbjct: 75  WEWFWVFPAARRGIDPRDGEEKRYHIMEGAASKWLKNAVGKAGIEKRVTAHVLRHSYATH 134

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G  +V   E YT   
Sbjct: 135 LLQKGVDLRTIQEALGHSSVKTTEIYTHVL 164


>gi|260459397|ref|ZP_05807652.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259034951|gb|EEW36207.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 353

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 82/334 (24%), Gaps = 31/334 (9%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLIS 76
            G      R+    R              + +       + E     R     T   LI 
Sbjct: 9   SGSWRVQVRRKG--RYVSETFLRRDDARRWATETERQVDRGETPTKSRVARLKTFGELID 66

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133
            +         +   R S  +  D + R  G  +   +  + +      R      P + 
Sbjct: 67  LHIDDMCDVGKSP--RRSKAAALDMLQRHLGKCNISALDRERLIRFGRDRAAQGAGPMTL 124

Query: 134 IQFLTSMRVLFKWAVRQEYV--------AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
              +  ++++   A     +             L       K         +D       
Sbjct: 125 GIDIGFIKLVLSHAAAVHGLPVKVEPVDFARMALKRLGLVGKGCERDRRPTQDELDRLIA 184

Query: 186 WSEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
             E +  +         F + + +R  + C+A    L++    +  +        +  + 
Sbjct: 185 HFESNPLQKTPVGRIIRFAVATAMRQEEICKARWSDLESRTRMLLIRDRKDPRNKKGNNQ 244

Query: 241 FM---------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            +             +     +    ++     N       F+       + +   H +R
Sbjct: 245 RIPLFAATGYDAWAIVEEQRAKRSNDDDRIFPFNHRSVGTAFRRGCADLSIHDLHFHDLR 304

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
               +   +AG T  ++    G K       YT 
Sbjct: 305 HEGTSRLFEAGFTIEQVALVTGHKDWKMLRRYTH 338


>gi|297559583|ref|YP_003678557.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844031|gb|ADH66051.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 404

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 108/381 (28%), Gaps = 58/381 (15%)

Query: 5   LRLPPF-VTKERT----RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           ++LP   + +E++    R  +    +R   G++    +  +                 R 
Sbjct: 11  VKLPDGSLRREKSASYGRGKRWAARYRDDRGQQKSPKFKTKPE--AERHLKRVEGELLRG 68

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
               P     TL+     +R+      L  +         + I  + G      I    +
Sbjct: 69  TYVDPAAGKVTLREFADRWREDVLHRPLTAS--RVLGELENHIYPEFGHRGLSSILPSDV 126

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +  V     +  P++      ++R +F+ AVR + +   PC  +  P+++          
Sbjct: 127 QRWVTRLGKSLAPATVESIYATLRGVFEAAVRDDLLTKTPCRGIRLPEKRKTAEPVMP-- 184

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229
                +       + +        SGLR  +     + HL      ++ ++         
Sbjct: 185 VETLREVVDGVPERFKAVVLLAAGSGLRQGELFGLELHHLDVEHLVLRVEQQLVTPVDNV 244

Query: 230 -----------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ---------- 268
                         I +      M L+ +         I +        +          
Sbjct: 245 AYLAQPKSPASYRDIPLTRETADMMLVHLDSFPAGPVEIEDRTDPHKPRRRTAHLLFTLP 304

Query: 269 ---------FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVD 317
                    ++        KAG+ K    H VR+F A++    G +   +    G  +  
Sbjct: 305 NGGPVRRWEWNRILTPAMAKAGMPKRSGLHSVRRFYASLLIRYGESVKTVQTRMGHSSAA 364

Query: 318 -QAETYT----KGADRIRLGI 333
              + Y        DR R  +
Sbjct: 365 ITLDVYAGLWPDSEDRTREAV 385


>gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
 gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109]
          Length = 265

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 10/256 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++       SL+  +      + ++++    +     +T   +   +  +   P +  
Sbjct: 7   LDKWGDYMTAASLSDETLYLRRRHVNRVLTHI-NKPLDDLTLDDLIDWLAQQNWKPETRR 65

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            + +S+R  F W   +  +  N    + R +      R     D+    +     ++ +L
Sbjct: 66  GYRSSLRQFFAWR-EKAGLGENIARDLPRARLHRSLPR--PARDVDILLALRKAPARTQL 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
             E + Y GLR  + C+     L  +   +  +          P    ++     +    
Sbjct: 123 MIELMAYGGLRRGEVCKLRTCDLVGDTLRVVGKGGHERFVPLPPHLSGQI---RGMTAGY 179

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
            F       ++A                  + H +R   AT++   G     + +  G  
Sbjct: 180 LFPGRIDGHLSAAYVGKLIGRALPA---GVTPHQLRHRFATVAYRKGRDIVAVQSLLGHA 236

Query: 315 TVDQAETYTKGADRIR 330
            +D    Y    D  R
Sbjct: 237 KLDTTMIYVALDDSAR 252


>gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826]
 gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 353

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +L  + ++++G+R S++     + +  +      +  G      +      L+     
Sbjct: 191 RNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIRGKGNKYRIVMIKRHLIEAHLN 250

Query: 251 GKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                +IN +          ++     S   +    KAG+ K    AH +R   AT+   
Sbjct: 251 AIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYK 310

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +D+++L  K +  +++
Sbjct: 311 KQKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAEDLAN 353


>gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus
           13826]
 gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 354

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +L  + ++++G+R S++     + +  +      +  G      +      L+     
Sbjct: 191 RNKLIIKVIIFTGIRVSEALNLKRKDITEDGDLFIIRIRGKGNKYRIVMIKRHLIEAHLN 250

Query: 251 GKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                +IN +          ++     S   +    KAG+ K    AH +R   AT+   
Sbjct: 251 AIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYK 310

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +D+++L  K +  +++
Sbjct: 311 KQKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAEDLAN 353


>gi|229060140|ref|ZP_04197510.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
 gi|228719180|gb|EEL70790.1| DNA integration/recombination/invertion protein [Bacillus cereus
           AH603]
          Length = 249

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 74/252 (29%), Gaps = 34/252 (13%)

Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +        +  + +  +R   + A+  E ++ N     + PK   E +  W ++++Q F
Sbjct: 1   MRDEGLKRGTIEKIIKVIRNSLEHAIDIELISKNVAAKTKLPKADKEELTVWNEKEVQLF 60

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232
                  S+  + F   L +G+R  +      + +      +  ++T +           
Sbjct: 61  LKAAQ-DSRYSIVFHLALVTGMRQGELLGLRWKDVDLEKGHLTIRQTLSHDGKTFLLGGK 119

Query: 233 -----ITVELPDGFMKLLAMT--------------PIGKETFFINNDKQKMNATQFSIWF 273
                  + LP   +  L                     +          +N        
Sbjct: 120 IKSSLRKILLPASTIAKLRKHRAVVLKEMLSQGGEYQENDLVMCTPSGTPINPANVRRSL 179

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331
            A   KA V K   H +R   AT+    G     +    G   +    +TY+       +
Sbjct: 180 NALIQKAAVPKVRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSHVLPT--M 237

Query: 332 GIKNSRRISSVV 343
                 +I  ++
Sbjct: 238 QEDAVNKIEEIL 249


>gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 295

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 80/281 (28%), Gaps = 35/281 (12%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
              + +S      A ++   +          + + G F   ++    + +  +      S
Sbjct: 18  FEAWLRSL---GYASSTCDKYPRQLREFLYFLEQQGRFGLAEVGASDVSAYFDYLSGRRS 74

Query: 132 S----------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179
                            ++R   ++  R   V +     V  P      IR  ++ ++  
Sbjct: 75  VKTGELLSHSHLRSVRKTLRGFQRYL-RSLGVPVFSLPGVSLPGLSAAPIRVLSRVEVGL 133

Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVE 236
                 F   G + +         GLR S+     V  +      ++    K      V 
Sbjct: 134 LYDGCGFDHWGLRDQALLSLGYGCGLRRSEIHLLDVGDVHFKKGWVQVLSGKGRKERFVP 193

Query: 237 LPDGFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS- 285
           +       L         FF           +    ++     S   +  ATKA ++   
Sbjct: 194 MVGRVKDDLYAYLTEGRRFFSGRSPSPAFLLSQRGHRLGPKSLSERLEKLATKAELSGGS 253

Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              H +R   AT   + G +  ++    G  ++D  + YT 
Sbjct: 254 VGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTH 294


>gi|300788914|ref|YP_003769205.1| integrase family protein [Amycolatopsis mediterranei U32]
 gi|299798428|gb|ADJ48803.1| integrase family protein [Amycolatopsis mediterranei U32]
          Length = 545

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 109/428 (25%), Gaps = 123/428 (28%)

Query: 16  TRHGKIIYYFRK-------------------------GHGRRIR----LPYPHESTFIPA 46
            RHG   +YFR                             +R+R    +    ++     
Sbjct: 33  KRHG--QWYFRIELPKDVQGNRRPRRRGGYESATEAEKGLQRVRDLLGIAEEGDTETSRK 90

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKW------------LISEYRKSAHWGSLAVNSRIS 94
               L G   ++E +         ++             +  E+       +++ N   S
Sbjct: 91  IGDLLAGLISQKEPLPETETVRRLVRAGSAVLEQPLMGVVFDEFLARKK-RNVSRNMYRS 149

Query: 95  FESYFD-QIIRKSGDFDYRKI--------------------------TTKHIRSGVESRK 127
           +ES+    +          ++                            + I +    R 
Sbjct: 150 YESHVRLYLRPHLAKVRRDRLRVGHLDAMFEAIVERNEQIAEYRASGDPRKIEAVKWQRP 209

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
             P+S  +   ++R + + AV Q  +  N    VE P       + WT E + +++    
Sbjct: 210 VGPTSLHRIKETLRAILRPAVDQGLLTHNVAKLVELPSAVRPKPKLWTPERIAKWRRTGE 269

Query: 186 ------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218
                             +    +    F  + ++GLR  + C                 
Sbjct: 270 VPYPVMVWTGDLTGAFLDFVVNHRLYALFHLIAHTGLRRGEGCGQRRSDTYLDAASLEVA 329

Query: 219 ---NNIFSIKTQKTGT------------------IITVELPDGFMKLLAMTPIGKETFFI 257
                      Q                         +   D     L    +  +  F 
Sbjct: 330 NQIVQYGWETGQSKPKTPSSEGIVALDPNTVLVLRAHLARQDETKARLGDDWVENDLLFT 389

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             D   ++    +  F      AG+   + HG+R  +AT++  AG     +       ++
Sbjct: 390 EPDGNPLHPADVADEFARLIKLAGLPPITLHGLRHGAATLALGAGVDMKVIQHMLRHSSI 449

Query: 317 DQAE-TYT 323
                 YT
Sbjct: 450 KVTMDLYT 457


>gi|297618160|ref|YP_003703319.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145997|gb|ADI02754.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 34/343 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP---RKKPTTLK 72
            R    +     G G   +  Y  +  + P    A       R  +  P   R    +L 
Sbjct: 4   KRGKGWLVRIYLGRGEDGKKKYFTQMIYAPTEYMARQMEADIRRKLVKPAGYRVAVHSLG 63

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130
                +        ++  +   +ES+  ++    GD     +  + +   +  +     P
Sbjct: 64  EWFDVWLSEIKDT-VSYRTWKEYESHVRKLKPLVGDLLLYSVQAEALSKRLAGQFTHLRP 122

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            +      +++   + AV ++    +  +  + P+   E  R   ++++++      E  
Sbjct: 123 KTRKNLYATLKTAVREAVERKLAPSDALVGFKLPRVPHEIRRTLGRDELKRLIEAAKEY- 181

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------------QKTGTIITV 235
           +  L    L  +G R  +        +     +I                 +      TV
Sbjct: 182 RHGLIIRLLCVTGARLGEILGLTWDCVDVERRTITIEKSVDTKHRVLKGDVKTPQARRTV 241

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNK 284
           EL D    LL       +   I+  K           + +         +    KAG+  
Sbjct: 242 ELDDETTALLKAVMPSGKVVPIHWQKEKSLVFQADDGRPVKYEAVRKTLRKALEKAGLPI 301

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              H +R    T+    G     +    G         Y +  
Sbjct: 302 IRIHDIRHSVVTLLLSEGVPPILVANLVGHNVGTTVNCYAQQV 344


>gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1]
 gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1]
          Length = 301

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 88/285 (30%), Gaps = 36/285 (12%)

Query: 89  VNSRISFESYFDQIIRK----SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140
             +  S+ +     +       G++   +     I+  +   KH     P++  +++ ++
Sbjct: 19  EKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAAL 78

Query: 141 RVLFKWAVRQEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190
           +V F + +    +  NP   ++             +  TKE+  +F S+           
Sbjct: 79  KVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKRL 138

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------NIFSIKTQKTGTIITVE 236
           +     + +LYSGLR ++     +  +                N F+           + 
Sbjct: 139 RNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNLR 198

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294
               + K L             +++                A  A ++  + H  R    
Sbjct: 199 KWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSFC 258

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A+AG     +      +++     Y + +   +  I+  R++
Sbjct: 259 KNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IETLRKV 301


>gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 2/110 (1%)

Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
           +    +                +  +     +  +       +   +        K    
Sbjct: 54  HGDVHLPYALERKYRNASKEFIWQYVFPAEKLSVDPRSGRPGRHHASEQNIQRAVKDALR 113

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           KAGV K  S H  R   AT   + G     +    G K V     YT   
Sbjct: 114 KAGVQKNGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHVL 163


>gi|313207391|ref|YP_004046568.1| integrase family protein [Riemerella anatipestifer DSM 15868]
 gi|312446707|gb|ADQ83062.1| integrase family protein [Riemerella anatipestifer DSM 15868]
          Length = 385

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 113/365 (30%), Gaps = 46/365 (12%)

Query: 19  GK-IIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72
           GK    +FR   G  IR+         F      A   +   RE + S   P+     +K
Sbjct: 18  GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 77

Query: 73  W--LISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---------TKHI 119
              LI    +       +L+ NS  +F S  +  I    +  Y ++           + +
Sbjct: 78  RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 137

Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 +  +  +  + L  +R +F   +  +Y+  NP   ++  K   +        + 
Sbjct: 138 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 197

Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            +  S   +       +    + Y G+R ++  +  V  L      I      T    + 
Sbjct: 198 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 257

Query: 238 PDGFMKLLAMTP----------------------IGKETFFINNDKQKMNATQFSIWFKA 275
                + L                           G +  +   ++ K+     +  ++ 
Sbjct: 258 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 317

Query: 276 KATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                 G++K+ + ++   A     AG     + A +G  T    E Y +     R   +
Sbjct: 318 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYARIMKLQR--FE 375

Query: 335 NSRRI 339
            +++I
Sbjct: 376 EAKKI 380


>gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 439

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 88/287 (30%), Gaps = 28/287 (9%)

Query: 74  LISEY------RKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSG 122
           LI  Y      +++    ++   +  +F                 D   ++     I S 
Sbjct: 109 LIEIYQSVCESKEALQGKTIGKATVRAFRDSRKNFALFLKTRENEDCLPKEADKDLIESY 168

Query: 123 V----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTK 176
                    +  S+    L  +  + + A+++ Y+  +P     +E P  +   +     
Sbjct: 169 RLFMLRDLGNKESTVSNRLRHLHQVIRKALQERYIHADPFELIDIETPTYERNALTSDDL 228

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
             +  ++   S  +  RL F    ++GL  SD  +  +  +       +           
Sbjct: 229 HKLLSYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGRRYISLCRTKTQN 288

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHG 288
            ++       + +           +   +     + F+   +    KAG+      ++H 
Sbjct: 289 RSIVPLLPIAEEILTIVSDGRKEGLLFREFP-TNSHFNRKIRDIIIKAGLPSHTEATSHT 347

Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            R   AT I  + G     +    G + +   E Y K   + ++  +
Sbjct: 348 ARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIARE 393


>gi|242240462|ref|YP_002988643.1| integrase family protein [Dickeya dadantii Ech703]
 gi|242132519|gb|ACS86821.1| integrase family protein [Dickeya dadantii Ech703]
          Length = 374

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 102/299 (34%), Gaps = 19/299 (6%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRS 121
             R K   L   + +Y  +          +  +  +   +   +  + +  +I++  I  
Sbjct: 2   KKRIKNILLSKALDKYFSTVSRHKRGQL-QEFYRINVIKR--SRLANRNMDEISSIDIAE 58

Query: 122 GVE-------SRKHTPSSAIQF---LTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +       +R   P SA      L  +  L+    V     +INP  ++ +P   +  
Sbjct: 59  YRDTRLSEFNARTQKPISANTVRLELALLSALYNLAKVEWGTCSINPVENIRKPTVSSGR 118

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +  +    F   L +G+R  +      ++    +       T
Sbjct: 119 TRRLTTHEERRLTRYFKDKNPELLAIFHIALETGMRQGEILSLRWEYTDLRLGVAHLPLT 178

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288
               + ++P        ++ +G+     N       ++ F   ++       ++    H 
Sbjct: 179 KNGTSRDVPLSSKARQILSGLGERPHHENGYIFSYTSSGFKSAWRVALKALAIDDLHFHD 238

Query: 289 VRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345
           +R  + +   + G     E+ A  G K+++  + YT   A  +   +   ++ +  + S
Sbjct: 239 LRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRYTHLRATHLVSKLDAHKKQAKKLAS 297


>gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
 gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides
           clarus YIT 12056]
          Length = 333

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 81/229 (35%), Gaps = 8/229 (3%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  K IR        + +SA  + ++ R L K A +++ +  N    +++ + K    + 
Sbjct: 109 LNCKQIRHPN--ISVSRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQY 166

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T  ++++  +   +    + A  F   +GLR SD  +    +++    +    +  T  
Sbjct: 167 LTLAEVKKLAATPCKIPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTE- 225

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                +  + +                 + +     +   K   ++AG+ K  + H  R 
Sbjct: 226 -KTETEATLPISNEALELCGIPGSGRVFKGLTRAMTNQPLKQWISEAGIKKHITFHCFRH 284

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             A I    G   + +      K V   + Y    +  +   + + +IS
Sbjct: 285 SYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 331


>gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973]
 gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973]
          Length = 448

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 82/298 (27%), Gaps = 21/298 (7%)

Query: 52  TGSTPKREYINSPRKKPTTL-KWLISEYRKSAHWGSLAVNSRISFESYFDQI------IR 104
                  + +   +    TL    +++Y +    G  +  +   + + +  +        
Sbjct: 128 EKVRNAFQGLEYRKHTLITLYDDFLTDYAQKVECGLKSKRTLQKYRAVYKHLKSFLQTRH 187

Query: 105 KSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D   ++I                  + ++   +   +R+L   AV   ++   P   
Sbjct: 188 HLSDIALKEIQPTFATDFETFLLTYCHLSHNTVWLYSFPVRMLMHRAVENGWLVRYPFSD 247

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
                ++       TKE+++               R  F F  ++GL   D      +++
Sbjct: 248 Y-NISQQRPERVFLTKEEIRLLIDAPKLTPAQTFIRDMFLFCTFTGLAYIDLKNLREENI 306

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFK 274
             + F              +      L   L +                 +        K
Sbjct: 307 VRSPFDGDVWIRTRRQKTSVEVNVKLLDIPLQILDKYSGLSNNGYLFPIPSHVYCCNQLK 366

Query: 275 AKATKAGVNK--SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
               K G++K  + H  R   AT+     G     + +  G K +   + Y K  +  
Sbjct: 367 TIIKKCGIDKHVTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEK 424


>gi|254465467|ref|ZP_05078878.1| phage integrase [Rhodobacterales bacterium Y4I]
 gi|206686375|gb|EDZ46857.1| phage integrase [Rhodobacterales bacterium Y4I]
          Length = 229

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +++G R S+       ++ ++   +   KTG        + +  L+ +       + I  
Sbjct: 70  IFTGCRLSEILTLRWDYVTSHHLELPDSKTGRRRIPLPREAYDILMELPREAGNPYVILG 129

Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           D            ++   +KAG+ +   H +R   A+++   G     L    G K +  
Sbjct: 130 DVDGAPLVNLQKPWRRIRSKAGLEDVRIHDLRHTYASVAMKDGIDPFTLKEIMGHKNLTT 189

Query: 319 AETYTKGADRI--RLGIKNSRRISSVVDSD 346
              Y   AD    R     + R++  V  D
Sbjct: 190 TLRYAHLADDAVQRAAGSVAARLARAVRQD 219


>gi|291276218|gb|ADD91307.1| transposase B [Bacillus sp. BS-01]
          Length = 639

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 75/291 (25%), Gaps = 34/291 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVES 125
            K ++  Y K     + + +  +   S   +          G     ++T   I      
Sbjct: 223 FKEIVKRYCK-LMLNTASFSHVVDIASKLKEFFNFMNKNCEGIQRIHQLTRNEIEQYFNY 281

Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179
              +   PS+    ++++ V F    R ++            + PK      R   +  +
Sbjct: 282 INLKGLKPSTVTGRISTLDVFFTTIQRYDWKDTPSKILIFQEDYPKVPKALPRYIDEHIL 341

Query: 180 QQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTII 233
           +Q      +          +L   G+R S+ C      +      +        K     
Sbjct: 342 EQLNGKLDKLEPYIATMVMVLQECGMRISELCTLKKGSVITDKEGDCFLKYYQWKMKKEH 401

Query: 234 TVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
            + +      L+ +                F   D   +    F +     A +  +   
Sbjct: 402 IIPISKEIAALILVQEQRVADELDDGCVYVFPRKDCSPLKQDTFRVKLNELAYEEKITDS 461

Query: 284 ----KSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  H    R    T   + G   H +    G ++ +    Y    D 
Sbjct: 462 NGEIFRFHDHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDE 512


>gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA]
 gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA]
          Length = 267

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 77/257 (29%), Gaps = 12/257 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +++++      +LA N+  S+       +   G+ + + +               P +  
Sbjct: 2   VTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYGEVNKKNLLAYKGYWVEN---FKPQTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L  +    ++  +++       +  +           +     Q     + E      
Sbjct: 59  LRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKVDGYEE---WYF 115

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIG 251
              F+  +G R S+      +H++     + ++           +      K L    + 
Sbjct: 116 IVWFMAATGARVSELLHIKAEHIKVGYLDLYSKGGKIRRLYIPKNLRTESEKWLKNQGLT 175

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   Q++     +   K  A K G+NK     H  R   A    D       L 
Sbjct: 176 SGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLALLA 235

Query: 309 ATYGWKTVDQAETYTKG 325
              G ++++    Y + 
Sbjct: 236 DLMGHESIETTRIYLRR 252


>gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia
           thailandensis E264]
 gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia
           thailandensis E264]
          Length = 159

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           L +G R ++      + +      ++      K G    V L    +  L       E  
Sbjct: 9   LSTGCRKNELLALDWRRVDFERSFLRLDAEHTKNGKRRVVPLNSAALSALRDQRDWVERK 68

Query: 256 -----FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309
                ++               F A   + G+     H +R   A+     G + + +  
Sbjct: 69  CSGSEWVFPGWSGKRIQTLQKGFNAACARVGIENFRIHDLRHTFASWLVMEGVSLYVVKD 128

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
             G  ++   E Y   + D+ R  ++  
Sbjct: 129 LLGHSSISVTERYAHLSPDQGRAAVQKL 156


>gi|323949163|gb|EGB45054.1| phage integrase [Escherichia coli H252]
          Length = 418

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEYIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S ++ + 
Sbjct: 375 YARQRAYMLQQWADMIDSWINGEH 398


>gi|312973881|ref|ZP_07788052.1| phage integrase family protein [Escherichia coli 1827-70]
 gi|310331415|gb|EFP98671.1| phage integrase family protein [Escherichia coli 1827-70]
          Length = 299

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 89/262 (33%), Gaps = 17/262 (6%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------KHTPSSAIQF 136
                +     + +   I  + G   Y  +  + I+  +           ++ PS+  + 
Sbjct: 17  KRHKKSWDKDVQRFTQYIEPRLGKIRYCDLRAREIQQVLFDMLEGRIHGQQYAPSTCNRA 76

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-- 194
           L  ++ + ++A+RQ+ +  N    +   K   +  R +  +++++     ++        
Sbjct: 77  LAILKTMGRYALRQDVLEKNEADKIPLLKENNQRTRFFDADEIRRILDAATQYPNKAAGG 136

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
               LL +G R S+      +H+     ++    T    +  +      L  +  I +  
Sbjct: 137 LIAMLLLTGTRKSEMLNVRHEHIDRANRTLFIPYTKNGRSRTVYLSDAALSIIDAIPRVG 196

Query: 255 FFINNDKQKMNATQF---SIWFKAKATKAGVNKS---AHGVRKFSATISADAG-ATAHEL 307
                   K N          ++    + G++K+    H  R   A++   +G  + +++
Sbjct: 197 SNPYLFAIKDNGKPISEPRWAYEKILAQCGIDKNEVCFHTTRHSVASLLVSSGQFSLYDV 256

Query: 308 MATYGWKTVDQAETYTKGADRI 329
            A     ++   E Y K     
Sbjct: 257 KAQLAHASIQSTERYAKLTPER 278


>gi|253755605|ref|YP_003028745.1| tyrosine family site-specific integrase [Streptococcus suis BM407]
 gi|251818069|emb|CAZ55861.1| tyrosine family site-specific integrase [Streptococcus suis BM407]
          Length = 399

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 108/371 (29%), Gaps = 48/371 (12%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKG----HGRRIRLP------YPHESTFIPAYMS 49
           M          V       GKI Y    G     G+R++             T   AY  
Sbjct: 1   MATKSSKKYKGVYC--DNKGKIFYQIDLGIDPVTGKRVQKKARKNQYGKTFETMKEAYDE 58

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            +         ++       T +  ++  Y K+      +V +  +   +    I+  G 
Sbjct: 59  LVRIKYEFANKVSL-ENYNMTFENYMNTIYLKAYKQKVQSV-TYKTALPHHKLFIQYFGS 116

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              + IT +   +        ++ + A    +  +    +A R  Y++  PC +++ P+ 
Sbjct: 117 KPLKAITPRDCEAFRLHIIENYSENYAKNLWSRFKACMGYAERLGYISDMPCKALDNPRG 176

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--- 219
           K      WT  + Q F         E  Q   A      +G+R S+      + +     
Sbjct: 177 KHPKTPFWTYAEFQTFIKSFDLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKK 236

Query: 220 ---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--- 261
                               +T+       +EL D  +++L +    +      +     
Sbjct: 237 FLKVHTTLEKDENGNWYRKDQTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISR 296

Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKTVD 317
                  +      K KA + GV   +  G+R   A+   +        +    G     
Sbjct: 297 FGDPFCKSTICRIIKRKAQQVGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKS 356

Query: 318 QA-ETYTKGAD 327
               TY+   +
Sbjct: 357 TTLNTYSHWFN 367


>gi|167566345|ref|ZP_02359261.1| integrase family protein [Burkholderia oklahomensis EO147]
          Length = 357

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 97/346 (28%), Gaps = 44/346 (12%)

Query: 16  TRHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS--PRKKPTT 70
           T++G+  + +   R   G RIR      +         L        Y  +   RK   T
Sbjct: 23  TKNGRRRFRWKFERVIEGTRIRKSKFIPAGLSAREADELGRKWDAEVYAPATGARKAVVT 82

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR------- 120
           +   +  +           ++    +       +   +  + D   +    IR       
Sbjct: 83  IGDCVRIHVND------KSSTWKDRKIRIQVLTKYAAEYENQDALDLYDWSIRFAGFMRA 136

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                G   +  +  +    L  +R   K+A +   +  +    +  P   +E    +  
Sbjct: 137 NVDRQGNPKKPMSDGTVHNTLGYLRAAIKYAHKIGKIDYDQTAKMVIPPA-SEERHVYKG 195

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                  +      Q R A     YSG+R S+  RA       N  S+ T K G    V 
Sbjct: 196 RREMLEIAHACPNRQVRAAIRVAFYSGMRLSEILRATP---TKNGLSLGTTKNGRPRIVP 252

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295
           +      +          +                 +    TKAG      H +R  +A+
Sbjct: 253 IHPRIAVIARRVTFTIPAWR------------LKDAWIKARTKAGHAEVRFHDLRHSAAS 300

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              + G   + +    G KT    + Y              ++I S
Sbjct: 301 EMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDK--LADAVKKIGS 344


>gi|59801941|ref|YP_208653.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
 gi|240014855|ref|ZP_04721768.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae DGI18]
 gi|240017301|ref|ZP_04723841.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae FA6140]
 gi|240081059|ref|ZP_04725602.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae FA19]
 gi|240113269|ref|ZP_04727759.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae MS11]
 gi|240118666|ref|ZP_04732728.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae PID1]
 gi|240121374|ref|ZP_04734336.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae PID24-1]
 gi|240124209|ref|ZP_04737165.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae PID332]
 gi|240126412|ref|ZP_04739298.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae SK-92-679]
 gi|240128877|ref|ZP_04741538.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268597170|ref|ZP_06131337.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599349|ref|ZP_06133516.1| phage integrase [Neisseria gonorrhoeae MS11]
 gi|268604378|ref|ZP_06138545.1| phage integrase [Neisseria gonorrhoeae PID1]
 gi|268682835|ref|ZP_06149697.1| phage integrase [Neisseria gonorrhoeae PID332]
 gi|268684996|ref|ZP_06151858.1| phage integrase [Neisseria gonorrhoeae SK-92-679]
 gi|268687258|ref|ZP_06154120.1| phage integrase [Neisseria gonorrhoeae SK-93-1035]
 gi|59718836|gb|AAW90241.1| putative integrase/recombinase, putative phage associated protein
           [Neisseria gonorrhoeae FA 1090]
 gi|268550958|gb|EEZ45977.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583480|gb|EEZ48156.1| phage integrase [Neisseria gonorrhoeae MS11]
 gi|268588509|gb|EEZ53185.1| phage integrase [Neisseria gonorrhoeae PID1]
 gi|268623119|gb|EEZ55519.1| phage integrase [Neisseria gonorrhoeae PID332]
 gi|268625280|gb|EEZ57680.1| phage integrase [Neisseria gonorrhoeae SK-92-679]
 gi|268627542|gb|EEZ59942.1| phage integrase [Neisseria gonorrhoeae SK-93-1035]
          Length = 384

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 95/366 (25%), Gaps = 54/366 (14%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP------ 64
           +TK R   G+ +Y  +   G++    +    TF    ++   G   + E    P      
Sbjct: 4   ITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKR 63

Query: 65  -RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
            + K  TL   + +Y         +       +     ++    G     K+        
Sbjct: 64  GKVKMMTLSEAMRKYLNETLGAGRSK------KMGLRFLMEFPIGGIGIDKLKRSDFAEH 117

Query: 123 VESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP--------------- 157
           V  R+             S+A+Q L  +R + K A     + I                 
Sbjct: 118 VMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNM 177

Query: 158 -CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              S  R +  T            +            L     +Y+  R  + CR     
Sbjct: 178 VAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDD 237

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQK 263
              N  +   +           +    +L M                      I +    
Sbjct: 238 WHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVP 297

Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            N    S  +       G+ +   H +R  +AT  A+ G T  ++         +  + Y
Sbjct: 298 CNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRY 357

Query: 323 TKGADR 328
                R
Sbjct: 358 VSVRKR 363


>gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679]
 gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679]
          Length = 361

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/321 (8%), Positives = 71/321 (22%), Gaps = 65/321 (20%)

Query: 73  WLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
            LI    ++ K       + N+  ++  +   +             I  + +   V   +
Sbjct: 24  QLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLR 83

Query: 128 H----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +                  ++    L  +     +  R             + +     +
Sbjct: 84  YPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFL 143

Query: 172 RPWTKEDMQQ---------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               K   Q+                              + +L    +   GLR  +  
Sbjct: 144 HHVNKGRYQKNVLKLRVKKKQIRTLRSEEVKQIIDACHTKRDKLILMLMYEGGLRIGEVL 203

Query: 211 RAGVQHLQNNIFS--------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---- 258
              ++ +                 +    +          +L+++        +      
Sbjct: 204 SLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEH 263

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                        + +         +    + G+  ++H +R   AT     G     + 
Sbjct: 264 DYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQ 323

Query: 309 ATYGWKTVDQA-ETYTKGADR 328
              G   V     TY   +D+
Sbjct: 324 KRLGHAHVQTTLNTYVHLSDQ 344


>gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans
           DSM 9485]
          Length = 317

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 29/287 (10%)

Query: 75  ISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  +         L+ N+  S+                  IT   I+  +  RK  P + 
Sbjct: 19  LENFLAELRQEDRLSENTITSYRCDLRTAGLALCQE-LSTITAHDIQQFLAGRKEQPGTT 77

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
            + + S+   F+WA  + YV  NP        P            E     ++  +    
Sbjct: 78  NRRIASLNRFFRWAKERGYVTHNPVEQIGGRLPTEHRPQPIANEHELRALDQAIAAAPQP 137

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMKLLA 246
            RL F  L   G+R  +     +  +             ++     +    PD   + L 
Sbjct: 138 YRLIFTLLREIGIRTDEVLNLNLGDVILEPGREMLLVRDSKSGSKRMIALTPDAMPRSLR 197

Query: 247 MTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKAGV----------NKSAH 287
                                      +       + A    A +            + H
Sbjct: 198 GLRHWVREMDHLPPDTPLFRSSRGTRASYDTLHRRWVAVCRAARLIDVVDGREQPRYTLH 257

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
            +R  +AT    A      +    G +       YT+         +
Sbjct: 258 HLRHTAATKLV-AFYPEQVVRRILGHRDPRSTRRYTELVRNRHHAAE 303


>gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium]
 gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +L    +  +       +  ++ +      K    +AG+    + H +R   AT 
Sbjct: 74  WAWQYVLPSARLSVDPRSGRRQRHHVDESMLQAAVKRAVAEAGIAKPATCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKEVATTMIYTHVL 163


>gi|315038555|ref|YP_004032123.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
 gi|312276688|gb|ADQ59328.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112]
          Length = 377

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 109/355 (30%), Gaps = 44/355 (12%)

Query: 17  RHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           ++GK     R         ++  +    ++ +        T     ++ ++    K TTL
Sbjct: 13  KNGKYELSIRYRDESFTGIKKKAIRLSKDTAYARGKGE-TTLKKRIKDSLSEIEYKDTTL 71

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127
             L  +   +     LA  +  ++++  + I +   D     I    +   +      +K
Sbjct: 72  DKLKDKLISNMEEQGLAYKTIETYKANLNVINKTFKDQTVSTIKAVTVNRYLNDASYKKK 131

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-------PWTKEDMQ 180
            +  +   F+     +F +A +  Y+  NP   ++   R     +         T ++ +
Sbjct: 132 LSNGTVHSFMVLFFKIFNYAEQFGYLKDNPNSKIKVNYRDESKKKLDKIENWYLTDDEFK 191

Query: 181 QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
              ++  E  +P  +  F++L  +G+R  +     V+ +     +      GT+I  +  
Sbjct: 192 TLMNYCDEKKRPDYKEFFQWLYLTGMRIGEGSAIQVKDIFKIDDTYYADVNGTLICKKGW 251

Query: 239 DG----------------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                                   + K           F        +N +    W    
Sbjct: 252 RKQPFTKTVKGMRKVSLPDQAVELYQKHKVDKKDDDYLFTNMYSGGPLNVSSVDRWLGIF 311

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
             K  +  + S+H  R    +  A+AG     +    G +  +     Y     +
Sbjct: 312 NDKEELTKDISSHIFRHTHVSKLAEAGFPLPVISDRVGHENEETTRKIYLHITKK 366


>gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R]
          Length = 411

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 80/287 (27%), Gaps = 21/287 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            ++ K    G    ++   + + +  +           D   +++T   I       +  
Sbjct: 118 EDFFKQVDAGLRCPSTYHKYCTVYKHLEEFIKNRYRVSDIALKELTPAFITDFDIFLRTE 177

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  +      +R +   A    ++  +P +       ++      TK+++++    
Sbjct: 178 KQCCNNTVWIYMMPLRRMITIAQNHGWIVRDPFVDY-SISAESTDRDYLTKDEIRRLLDL 236

Query: 186 WSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R  + F  ++GL  +D       +LQ +        T    T    +  +
Sbjct: 237 KFRRKSMELVRDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIML 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +    I K       D         +     K      G+ K  + H  R   AT   
Sbjct: 297 LDIPKQIIEKYDGMAKEDYLLPVPQYITACKNIKKIIGLCGIEKEITWHTSRHTMATEIC 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
              G     L    G   +   + Y K       R     S ++S +
Sbjct: 357 LTNGVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDKLSKI 403


>gi|296157635|ref|ZP_06840469.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295891881|gb|EFG71665.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 429

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 100/363 (27%), Gaps = 29/363 (7%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRI----------RLPYPHESTFIPAYMSALTGSTPKRE 59
            +     ++G   ++FR   G++           ++               L      + 
Sbjct: 25  GLFLFVAKNGTKSWHFRYSFGKKQQPRISFGMFPKISLARARELRAKAQLQLASGINPKV 84

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118
             +    +  T K     + +       +  +   F +Y D+ I+ + G    + IT   
Sbjct: 85  QQSDQAVEDDTFKTAAETWYRHKQETGRSAATLDKFRTYLDKDILPELGLKRLKDITRAD 144

Query: 119 IRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                E  +   +   + +    +R +F  A+ +     NP   ++   ++    +P+  
Sbjct: 145 CTRVQERIEKRNALNVSKKVRGWLREIFSQAIARGKCENNPASELKVIAKEAPKAKPYPH 204

Query: 177 ------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---- 226
                  D  +     +     R A    +++  R      A    +  +    K     
Sbjct: 205 LLEPELPDFLKALDRSTSRFIQRTAAWMTIWTASRPGMVRFAEWTEIDFDSALWKISREK 264

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKS 285
            K    I + LP   +  L                        S         + G    
Sbjct: 265 MKMRRDIVISLPAQLVAQLRELYKQTGKQRYLYPGIGWKNDVISENTINGVFARIGYKGR 324

Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNSRRIS 340
              HG R  ++T+  + G     +           A  Y +    A RI +    +  + 
Sbjct: 325 MVGHGTRHTASTLLREHGWEKDHVEMQLAHIEEGTAGDYNQAKYLAQRIAMMQWYADYLD 384

Query: 341 SVV 343
           ++ 
Sbjct: 385 ALK 387


>gi|327253769|gb|EGE65398.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 295

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       E   +      T+  L   +  S  +  LA  ++  +  +   ++   G   
Sbjct: 1   MAKVWQNYELEKAKLHDIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKML 60

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              +  + +R  ++ R   + + A   L S+  ++ W   + YV  NPC  V    + T 
Sbjct: 61  ADNVKIEQVRIFMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTL 117

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R     D Q    +     Q R+A E       R  D      Q + +    I+  KT
Sbjct: 118 KARTVYITDEQYAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKT 177

Query: 230 GTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKAT----KAG 281
           GT    E        + +         E         K+ A   + W+         KAG
Sbjct: 178 GTKQIKEWSPRLRTAIQLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAG 237

Query: 282 VN--KSAHGVRKFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
           V    + H +           G +       +     G KT +Q   Y + 
Sbjct: 238 VPFGCNFHDI--------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 280


>gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928]
 gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928]
          Length = 327

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/316 (10%), Positives = 75/316 (23%), Gaps = 52/316 (16%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           +  +  + +      L+ ++   + +    +   +      + T   +         T +
Sbjct: 6   RAALDRFEEDLRARRLSPHTVRGYVADLVDLFGFAERAGVAEPTQIGLDVARSWLAETAA 65

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------- 182
           S     T  R            +    + +  PK ++      ++  M            
Sbjct: 66  SGAARATLARRTAAARAWGRQASTPGLVRLVTPKPRSPLPAVLSQRQMTDALTTAADDAA 125

Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240
                    +     EFL  +  R S+ C   +  +     + + + K G   TV     
Sbjct: 126 THPHDPLALRDLAILEFLYATAARVSEVCALNLDDVDFTRRTARLSGKGGRDRTVPFGVP 185

Query: 241 FMKLLAMT----------------------------------PIGKETFFINNDKQKMNA 266
             + L                                       G +             
Sbjct: 186 AERALHAWLAADARGAVLAAARANGARRAGAAAAAAVGWVGGGGGIQKTETEAVFLGARG 245

Query: 267 TQFSIWFKAKATKAGVNKSA-------HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           ++       +   A +  +        HG R  +AT   + GA   ++    G  T+   
Sbjct: 246 SRIDPAVVRRLVHARLRATPNTPDTGPHGFRHTAATHLIEGGADLRDVQELLGHATLATT 305

Query: 320 ETYTKGADRIRLGIKN 335
           + YT            
Sbjct: 306 QIYTHVTAERIKARYA 321


>gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               G+  +        +       +  +         K  A  AG+  + S H +R   
Sbjct: 71  PYEWGWKFVFPSYSRSVDPRTGVLRRHHVYENYVIRGVKEAARGAGITKHVSCHTLRHSF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + G     +    G   V     YT   
Sbjct: 131 ATHLLENGYDIRTVQELLGHSDVSTTMIYTHVL 163


>gi|186471842|ref|YP_001863160.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184198151|gb|ACC76114.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 347

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 92/332 (27%), Gaps = 25/332 (7%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70
            + +   G   Y                       +  A+         I      P T 
Sbjct: 5   QERKNSDGSKSYRATIRRKGHYASETFSTREEADQWAIAIETRIAGGAAIEGGDITPRTT 64

Query: 71  LKWLISEYRKSA---HWGSLAVN----SRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
           ++ LI+ Y +       GS A      + +   S FD+ I +    D   +    +R   
Sbjct: 65  VRDLIARYMREVSTTKKGSYAERNRLGTLLDRYSVFDKTIVEFSSTDIEAVRDARMRGSK 124

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGIRPWTKE- 177
           +    +  + I+ L  +  +F+ A+++                  P+ ++  +R      
Sbjct: 125 DHAPVSALTVIRDLGCLSGVFRHAIKKWKAPFTVNPCKEVDRPRAPRGRSVRVRDDDMRK 184

Query: 178 ---DMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTG 230
                          ++  +A+   F L + +R  +  R     +        +   K  
Sbjct: 185 LLDWSGYVPGADPANARQWMAWSVLFALETAMRRGEFMRMRWTDINRGERGVHLPDTKND 244

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
               V L    + LL     GK    +           F   F       G+N   H  R
Sbjct: 245 EARDVPLTKKALALLDSLTEGKPEDRVIGI----TYHTFGNAFYKCQKATGINVRIHDCR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322
             + T  A        L +  G + +   + Y
Sbjct: 301 HEATTNLAKRVKDPLWLASITGHRDLRSLKIY 332


>gi|19704406|ref|NP_603968.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714664|gb|AAL95267.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 290

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSG 122
           +   ++  + ++     +  +   N+ IS     +  +      +     K+    IR  
Sbjct: 3   EKINIEKAVKDFIYYLEFEENKKNNTVISIRKDLNNFLEYLNKKNITTLDKLDELIIREY 62

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   K    + S+  + L+S++  +K+ +          + +E  K   + I+    +++
Sbjct: 63  LTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI 122

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  +    E S    + RL FE L  SG+  ++    G  +       +   K     T+
Sbjct: 123 KILREEMKEESFNILRDRLMFELLYSSGMTVAELLSLGELNFNLEKREVYLLKNKISRTL 182

Query: 236 ELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  ++                     F+NN   ++            + KA + K 
Sbjct: 183 YFSQTCKEVYLKFLIVKKEKFKEENNTNIIFVNNSNMRLTDRSVRRLINKYSEKANLQKE 242

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            S + +R          G +   L      K++   + Y
Sbjct: 243 VSPYTLRHSFCLYMLRNGMSKEYLAKLLDLKSIGLLDIY 281


>gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism]
          Length = 308

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 68/297 (22%), Gaps = 52/297 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFL 137
           R+      +++ +  ++  +  + +        R++    + + + +       +A    
Sbjct: 14  RQMIRARHMSLRTEAAYLQWIRRYVEFHSRRHSRELGPLQVEAFLTALATRSHVAASTQN 73

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  +         V +    ++ R  R        T ++++   +       P L   
Sbjct: 74  QALCAVLFLYRHVLKVDLPWLENIVRAVRPRRLPVVLTVDEVRCVLA--ELAGVPWLVAS 131

Query: 198 FLLYSGLRCSDSCRAG------------------------------VQHLQNNIFSIKTQ 227
            L  SGLR  +                                      L  ++  ++  
Sbjct: 132 LLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRLREW 191

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-----------------NATQFS 270
                            LA         +                         +     
Sbjct: 192 FENERRQKRPGVSLPFALAKKYPAASVSWGRQYLFPSASICADPYSRLPVRHHLHPGTVQ 251

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                    AG+    S H  R   AT   D+G     +    G   V     YT  
Sbjct: 252 RGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308


>gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   +    +       +  +  T      K+   +AG+NK  S H +R   AT 
Sbjct: 74  WCWQYVFPASKRSVDPRSGQVQRHHIAETALQKAVKSAIRRAGINKPGSCHTLRHSFATR 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G   +     YT   
Sbjct: 134 LLENGYDVRTIQELLGHADLQTTMIYTHVL 163


>gi|2618948|gb|AAC48880.1| integrase [Phage 21]
          Length = 356

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 96/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F+S        +      L +G R  D C      + +++  I  +KTG+        
Sbjct: 179 AIFESVSRRQPYLKCGMLLALVTGQRLGDICNFKFSDIWDDMLHITQEKTGSKLAIPLNL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 396

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 94/365 (25%), Gaps = 51/365 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  Y +         L            +S        +  +       
Sbjct: 25  RYTYKYVDALGKTRYVYAWK-----LLSTDRTPKGKRDDLSLREKERIIQRDLYDGIDTQ 79

Query: 69  TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG---V 123
            +   L   Y +K+A   ++  N+    +     +     G      I     R     +
Sbjct: 80  GSKMTLCQLYAKKNAQRPNVKQNTLNGRKYLMQALEDDILGSRSIDSIKPSDAREWAIRM 139

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           + +  +  +   +  S++  F  A+  +YV  NP      E  +  +E     ++E  Q 
Sbjct: 140 KEKGFSYKTISNYKRSLKASFYMAIEDDYVRKNPFDFKLSEVIEDDSEPKVALSEEQEQA 199

Query: 182 FKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
              F +  +  R  ++ +L    +GLR S+ C    + L     +I              
Sbjct: 200 LLDFMAHDNVYRKYYDDVLILLKTGLRISELCGLTKKDLDFENHAISVNHQLLKDKDGYY 259

Query: 230 -------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
                                     L       +      +   F+N     ++   + 
Sbjct: 260 IDEPKTKSGIRKVPMSDETEQAFQRVLKRKQKSNIKEIDGYRNFLFLNTSGSPVHKQMYE 319

Query: 271 IWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
              K    K            + H +R    T  A        L    G   +      Y
Sbjct: 320 TILKRMVQKYNKTHEVKLPKITPHTLRHTFCTRLAQKNMNPKNLQYIMGHSNIMLTLNLY 379

Query: 323 TKGAD 327
              ++
Sbjct: 380 AHSSE 384


>gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
 gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 88/265 (33%), Gaps = 21/265 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           + +Y++  +  +L+ N+  S+     Q  ++      RKIT ++++         ++P +
Sbjct: 5   LEQYQEYLYRKNLSDNTVRSYLYAVRQYFKQH-----RKITAENLQLYRAKLIDHYSPQT 59

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190
               + ++   FK+      + I+      +  R+ +  R  ++ D +  K    E    
Sbjct: 60  VNISIRALNNYFKF------LGIDLTSKTIKVTRRMQLDRVISQADYEYLKRRLKEDQIY 113

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
               A  F+  +G+R S+     V  ++     I ++               +LL+    
Sbjct: 114 NYYYAIRFMAATGVRVSELVGVLVADVRLGYKDIHSKGDKVRRIYIPKTLRTELLSWLEE 173

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATA 304
            K            +    S   +     +G+          H  R + A    +A    
Sbjct: 174 EKRDHGRLFLNNLGDPMSTSAVRRQLKVFSGLYQIDPERMYPHSFRHYFAKTFLEACGDI 233

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             L    G + ++    Y + +   
Sbjct: 234 TLLSNLLGHENLETTRIYLRRSSNE 258


>gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
 gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM
           18228]
          Length = 409

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 88/290 (30%), Gaps = 26/290 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK-SGDFDYR--KITTKHIRSGVE 124
           L  +I++  +S         +  ++          ++K  G  D    ++    IR  ++
Sbjct: 114 LDAIIAD-IESRIGIDYKKGTLPNYHYTRLTLGLFVKKRYGTDDVAFGELDELFIREYMD 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R     +   +L  ++   + A +  +      +  + P++K    +  T+ED  
Sbjct: 173 FCLDERGLALDTVRHYLAILKKTCRIAFKAGHSERYHFMHFKLPQKKENPPKALTREDFL 232

Query: 181 QFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + ++      +      R  F F  Y+G   +D+     ++L  +       K       
Sbjct: 233 KIRNLEIPERRKSLALTRDLFLFACYTGTAYADTVSITEENLFRDEEGSLWLKYH--RKK 290

Query: 236 ELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL          +                    K+    +GV  +   H  R
Sbjct: 291 NKMLARVKLLPEALAMLEKYKDPTRPTLLPPQEFRVLRGNMKSLRVLSGVSMDLVYHVGR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
              A++   + G     +    G   +   + Y +   +     ++  + 
Sbjct: 351 HSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKK--LFEDMDKF 398


>gi|167855779|ref|ZP_02478533.1| putative integrase [Haemophilus parasuis 29755]
 gi|167853119|gb|EDS24379.1| putative integrase [Haemophilus parasuis 29755]
          Length = 332

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 102/320 (31%), Gaps = 30/320 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-LTGSTPKREYINSPRKKPTTLKWL 74
            R  K      K     IR      +    +  +  +       EY + P+    T   L
Sbjct: 6   KRGDKWRVQINKKG---IRKNATFSTKVEASRWAISVESQIEAGEYSSIPK---MTFAEL 59

Query: 75  ISEYRKSAHWG--SLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR--KHT 129
           I +Y              S        ++I +   G  +   +  +H       R  + +
Sbjct: 60  IDKYVAEVTVNKGGAREESLR-----LNRIAKTPLGRVELEDLNKEHFEKWQNKRLTEVS 114

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             S ++   S+  +   A++ E++  NP   V++PK      R ++++++ +        
Sbjct: 115 VLSVLRERVSLSAVVSQAIKWEFLKSNPLSLVDKPKEPPPRTRRYSQDEIDRLLFVSGFD 174

Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
                    S+   +  F + + +R  + C    + +  N  +    KT       +P  
Sbjct: 175 FDKQPETMISRVGASILFAIETAMRVGEICNLKWEDVDFNKSTAFLPKTKNGFARTVPLS 234

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297
              +  +  + K     N    ++ ++     F+     AG+   +   H  R+ + +  
Sbjct: 235 STAIKILRHLEKVKSECNQTVFQVKSSSHDAIFRKMKELAGLADQDLHFHDTRREALSRL 294

Query: 298 ADAGATAHELMATYGWKTVD 317
           A        L    G + + 
Sbjct: 295 AKK-VDVMTLAKISGHRDIK 313


>gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 21/90 (23%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K    +  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVARCNINKRVGSHAFRHSFATR 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|75675757|ref|YP_318178.1| phage integrase [Nitrobacter winogradskyi Nb-255]
 gi|74420627|gb|ABA04826.1| phage integrase [Nitrobacter winogradskyi Nb-255]
          Length = 416

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 77/344 (22%), Gaps = 45/344 (13%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINSPRKKPTTLKWL 74
            G   + F              ++    A     +    +    + I     +P  L   
Sbjct: 7   KGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEPIRLGAA 66

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRK------ 127
              +            S    +    +I    GD      IT   +   +  R+      
Sbjct: 67  CDRWWAEVGSRG----SERDMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRVRA 122

Query: 128 ---------HTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                      P S  +   +    +R +   AV      +      E+   K       
Sbjct: 123 GRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWNAVVPRAPKWEKHWLKETKRPIR 182

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
                ++      E +       F + +GLR         Q            K G    
Sbjct: 183 EIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVPRV 242

Query: 235 VELPDGFMKLLAMTPIGKE------------------TFFINNDKQKMNATQFSIWFKAK 276
           + L      LL                            +I   +  +    F   ++  
Sbjct: 243 IPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWRYA 302

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +AGV    H +R  +AT +         +    G   +    
Sbjct: 303 TKRAGVKARIHDMRHTAATRTLRETGNLRLVQKLLGHTDIKITA 346


>gi|315608525|ref|ZP_07883511.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
 gi|315249797|gb|EFU29800.1| phage integrase family site-specific recombinase [Prevotella buccae
           ATCC 33574]
          Length = 267

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 75/265 (28%), Gaps = 12/265 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           +  ++ +    ++A N+  ++    +        +         +         +P +  
Sbjct: 2   VESFKTALRESNMAENTISAYIYAVN---DYFSKYKMLNKRNLLLYKANIIEMFSPKTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++    +   + +    +  +              +      + K    E      
Sbjct: 59  LRIQALNKFLEHIDKPKLRLKSVKVQQRTYLENVISQADY---IFLKKKLKQEENLMWYF 115

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIG 251
              FL  +G R S+  +  V+H+    F I ++                  K    T   
Sbjct: 116 VVRFLTTTGARVSELIQIKVEHVHIGYFDIYSKGGKVRRLFIPKRLREETEKWFKETQQS 175

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F N   +++     S   K  A + G+N +    H  R   A    +A      L 
Sbjct: 176 TGYIFRNRFGERITTRGISQQLKNYAERYGLNANVVYPHSFRHRYAKNFLEAFNDIALLA 235

Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333
              G ++++    Y +     +  I
Sbjct: 236 DLMGHESIETTRIYLRRTASEQQAI 260


>gi|288959398|ref|YP_003449739.1| phage integrase family protein [Azospirillum sp. B510]
 gi|288911706|dbj|BAI73195.1| phage integrase family protein [Azospirillum sp. B510]
          Length = 345

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 88/302 (29%), Gaps = 22/302 (7%)

Query: 42  TFIPAYMSALTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
             + A+    T  T        P   +P ++  +I  Y+ SA + + A  +R  +     
Sbjct: 9   AELAAWRKGATTGTAAPAAPPMPDEVRPGSVAHIIRLYKASARFTTKAEKTRYEYGQLLK 68

Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPC 158
            I   SGD   + ++ + ++   +S   T   + A   L  +R+L K+A    +V  N  
Sbjct: 69  VIEAWSGDAPVKALSRETVQDYYQSLWDTGKKAKANAVLRVLRILLKFAWDNGHVTHNAA 128

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHL 217
                            +E  +   +  + G      A  + +Y G R  D        +
Sbjct: 129 EKPGMVSIAPRLRIWSDEEIDRFVAAADAAGWPCIADAVVYGVYLGQRQGDLLALRQLAV 188

Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------------FINNDKQKMN 265
           Q +                +        A                     + ++ K   +
Sbjct: 189 QPDGTGYSIHLKQAKRGARVAIPLHPRAAARQRAALARRTEGGVKAVTALWNDSTKAPWS 248

Query: 266 ATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           A  F   F               +      R  + T  A+AG T  E+ A  G       
Sbjct: 249 ADTFRHQFSEIRATVAKELPSIADVWFMDTRDTAVTKLAEAGCTVPEICAITGHDEPSAY 308

Query: 320 ET 321
           + 
Sbjct: 309 QI 310


>gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
 gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030]
          Length = 394

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 71/251 (28%), Gaps = 19/251 (7%)

Query: 100 DQIIRKSGDFDY--RKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWA 147
             ++   G  D    ++    +        +          + ++   +   +R     A
Sbjct: 125 KHLLFYCGKHDLSFDELDKDWLDGFKYYLTNEAKTKSDTALSRNTQSSYFNKVRAAINEA 184

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            R+  +  NP   V   K KT      T +++             + AF F   +G+R  
Sbjct: 185 HREGIIRDNPLAQVTSIKAKTTKRVYLTLDEVNALAHTECRYPVLKSAFLFSCATGMRWC 244

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---- 263
           D  R     ++      +       ++         L                 ++    
Sbjct: 245 DIHRLTWSEIETFNNHKRIIFDQVKLSHGDAKSLQYLDIPKSAESLLGSPKASHERVFKG 304

Query: 264 -MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++  ++     A  AG+  + + H  R   A I    G   + +    G   +   E
Sbjct: 305 LKYSSYINVELLRWALAAGISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTE 364

Query: 321 TYTKGADRIRL 331
            Y    ++ R+
Sbjct: 365 IYADIIEQRRM 375


>gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA]
          Length = 282

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 65/274 (23%), Gaps = 18/274 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +         + N+  S  +            +   +             +  ++    +
Sbjct: 9   FINYLKKQEASPNTVKSCLASCRLYYSLFDGLNMTNL---MQYKDYLLNHYKAATVNNRI 65

Query: 138 TSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---- 191
             +          +      N  LS   P  +T+ +        Q+    + +  +    
Sbjct: 66  YGINRYLDSLVQSQDNSADANSVLSFRLPAVQTQQVSFLDDVISQENYVVFKDSLKSDGN 125

Query: 192 --PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
                   FL  +G R S+  +   +HL      + ++              ++ L    
Sbjct: 126 MFWYFVVRFLACTGARVSELIQMKAEHLDMRYMDLYSKGGKVRRIYLPDTLCLEALDWVH 185

Query: 250 IGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303
                            +     S   K  A + G+       H  R   A         
Sbjct: 186 QRGIDSGFIFITSHGQLITPRGISSQLKVLARRYGIPADTVYPHAFRHRFAKNFLANFND 245

Query: 304 AHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336
              L    G ++++    Y  K  D  R  I   
Sbjct: 246 ITLLADLMGHESIETTRIYLNKSTDEQREMIDRI 279


>gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium]
          Length = 163

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                     +  L     I  +       +  ++        +  A + G NK  S H 
Sbjct: 66  KYREANRDFVWQWLFPSKVISTDPRSGIERRHHLSEDSLQRAVEKSAGEIGNNKRGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           +R   AT   + G     +    G K V     YT   
Sbjct: 126 LRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|254281766|ref|ZP_04956734.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium NOR51-B]
 gi|219677969|gb|EED34318.1| site-specific recombinase, phage integrase family [gamma
           proteobacterium NOR51-B]
          Length = 296

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 87/296 (29%), Gaps = 38/296 (12%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------- 119
           TT + +   +  S      +              + + GD     IT   +         
Sbjct: 2   TTFQDVAEAWIASREHCVGS-------LGRIQFWVEEFGDQPIDAITEDAVDQALVRLAK 54

Query: 120 ------------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ER 163
                       R+    +    S+  +F++++  +FK+A R   +  +         + 
Sbjct: 55  RGKLKAGRGSARRAVPTGKPLAGSTINRFISTLSGIFKYARRVRALPRSHTPPTRGIEKA 114

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNN 220
           P+          +E  +          + R          ++GLR  +      + +  +
Sbjct: 115 PEPVDPEKYFRPEEVDKLMAVARVVDQKWRKLPALIILGFHTGLRVGNLLDLKWEDVDLD 174

Query: 221 IFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278
             ++    T              +  L   P G  +  +    +      +   ++    
Sbjct: 175 ERTLSVATTKNGRPHIAALTDRCITELQKLPAGSPSDLVFRSYRTDKPFNYRDLWQKVCD 234

Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
           +AG   ++ H +R    +  A AG +  ++M   G +T+  +  Y       R  +
Sbjct: 235 EAGFEGRTFHWLRHGCGSALASAGVSQAQIMQVMGHRTLVASARYMHSNVEDRRAV 290


>gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701]
 gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701]
          Length = 278

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
            G+  +       ++       +  ++ +      +     AG+ K  + H  R   AT 
Sbjct: 168 WGWQWVFPQHQRWRDASSGQQGRHHLDPSLIQRAVRRAVLAAGLTKPATCHTFRHSFATH 227

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328
             + G     +    G   V     YT+  +R
Sbjct: 228 LLERGQDIRTIQGLLGHSDVKTTMIYTQVLNR 259


>gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053]
 gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053]
          Length = 436

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 78/283 (27%), Gaps = 28/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVE 124
               I ++      G  + N+   +      +           D  + +++        E
Sbjct: 127 FDEHIEKFELLVQRGMRSDNTLRHWRKLKRHVTAFIKFQYKTSDLKFSELSGLFAEEFYE 186

Query: 125 SRK-HTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
               H P      SA + +   R + K  V+++++  NP    +      E I    ++ 
Sbjct: 187 YLTLHKPKPLAEVSARKDVKWTRQIVKIGVKKDFITRNPMEGFKCSGGDVEVIPLEFEQV 246

Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232
            +  +           R AF F  ++G    D        ++      +           
Sbjct: 247 ERIHRKKLHVKRLAEVRDAFIFQCFTGFAYQDIYGLTRDSIRLVGAKRERWLVRKRGKTQ 306

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------- 283
               V +     +L+            +      +  +++ + K  A    +        
Sbjct: 307 VGEMVPILPIVEELIEKYKDHPYCIAHDKLIPVNSNFRYNTYLKELADICNIRDITGSIR 366

Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               H  R F A +  + G    ++    G K +     Y + 
Sbjct: 367 RLDTHDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCRV 409


>gi|75812896|ref|YP_320513.1| Phage integrase [Anabaena variabilis ATCC 29413]
 gi|75705652|gb|ABA25324.1| Phage integrase [Anabaena variabilis ATCC 29413]
          Length = 360

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 96/305 (31%), Gaps = 51/305 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            LI  +  S      +  +R ++        D +  + G  D R +T  H+ + +   K 
Sbjct: 44  QLIELWVHSVTIK--SDQTRRAYRQIGYELVDYMQSRFGISDLRMVTLFHLHAYLAWLKD 101

Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRP 173
                        + ++A ++  +++ L++W  R         L  +           R 
Sbjct: 102 EKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERI 161

Query: 174 WTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            ++ ++ + +          +      L F  + YSG+R  +  R    + +  I     
Sbjct: 162 LSEREIAKLEKAAMAVDLQHNTNKMHWLLFTLMFYSGVRAGEIARQTSDYGKRVITPGLF 221

Query: 227 QKTGTI----------------ITVELPDGFMKLLAMTP-------IGKETFFINNDKQK 263
            +                     T+ L      +L               +    +  + 
Sbjct: 222 WRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASNDRPVFPSPSRRDRGKP 281

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++     +  +  +T AG+  SAH +R   AT++   GA+  +L A  G  +      Y 
Sbjct: 282 LSDRGLRLMMEEISTCAGIKFSAHFLRHTHATLAKKNGASDFDLQADLGHASPATTAKYI 341

Query: 324 KGADR 328
               R
Sbjct: 342 HHVGR 346


>gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121]
 gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121]
          Length = 341

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 76/296 (25%), Gaps = 44/296 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKH------- 118
           L+ EY +     +   N+ ++            G              I  +        
Sbjct: 22  LLDEYLRFVAARART-NTLLAQTFDLKVFFTIIGKEPTQVSTSDVLAFIQAQRLPRKENV 80

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-------------PCLSVERPK 165
           +R          S+  + L S+  LF +   +  V  N                     +
Sbjct: 81  VRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIR 140

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------ 219
                 R  + +++    +      + R     +L+ GLR  +     +  ++       
Sbjct: 141 APRRLPRVLSPDEVNALLAALRCE-RDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVF 199

Query: 220 -------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
                  +   +    T         D    + + T               ++A      
Sbjct: 200 VAAGKGGHQRIVPVAPTFFESLGRYLDAERPIDSATDHVFVVLKRPRRGNPLSAAGLDEI 259

Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                 + G+   + H +R    T   ++G     + A  G  +++    Y   A+
Sbjct: 260 LSGARVRGGLPHATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLAN 315


>gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp.
           longum F8]
          Length = 259

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 7/261 (2%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           +  S      + N+  +       + R       R +    + +   ++   P +     
Sbjct: 2   WLDSLKAAGYSTNTLNTRRCQMSALSRALEGDP-RDVEGDDLLAHFAAKDWKPETRKGAK 60

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            +    F+W         +P   +  P  K     P    D+    +        RL   
Sbjct: 61  NACVSYFRWLKASGRSEADPSEFL--PTVKRPEPHPRPCPDVVILTALRKATDSERLMLR 118

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                GLR  +  +   + +  ++        G      +      L  +        F 
Sbjct: 119 LGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIRSAHGYLFP 178

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
                   ++      +  +   G   +AH +R   AT +  A      +    G  +V+
Sbjct: 179 GRWSGHAESSYVG---RHLSDLLGDGWTAHSLRHRYATTTYAATRDLLLVSKLLGHASVE 235

Query: 318 QAETYTKGA-DRIRLGIKNSR 337
             + Y     DR+R  ++ +R
Sbjct: 236 TTQRYIAMPDDRLRAAVEATR 256


>gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 329

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 67/278 (24%), Gaps = 34/278 (12%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHI----RSGVESRKHT 129
           A     + N+  ++      ++  +               +    I        E R + 
Sbjct: 17  ARQKKASPNTVAAYRDTCRLLLAFAQSKTGKPPSSLSLADLNATLIGEFLHHLEEQRGNG 76

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------F 182
            ++    L ++  LF +A  +          V     +       +    ++        
Sbjct: 77  TATRNARLAAIHSLFTYAAPRAPEHAAVISQVLAIPPRRRERAIVSYLTAEEIDALVAAP 136

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240
                 G + R      + +GLR S+      Q +                     L   
Sbjct: 137 DRSTWHGRRDRSLLLLDVQTGLRVSELTGLNRQDIHLGAGPHVRCHGKGRKDRATPLTTQ 196

Query: 241 FMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKA--------GVNKSAH 287
            +K++        P      F      +++              A          + + H
Sbjct: 197 TVKVIRTWLAELSPDPTGPLFPTQPGGRLSRDAVERLVAKHTATAADTCPSIKEKHVTPH 256

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +R  +A     AG     +    G +  +  + Y   
Sbjct: 257 TLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHA 294


>gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A]
 gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA]
 gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 267

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 2   VTKFKNHLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 57  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKADGYDE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H+Q     + ++           +      K L    
Sbjct: 114 YFIVWFMAATGARVSELLHIKAEHIQIGHLDLYSKGGKIRRLYIPKNLRTEAAKWLREIG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|298374817|ref|ZP_06984775.1| integrase [Bacteroides sp. 3_1_19]
 gi|298269185|gb|EFI10840.1| integrase [Bacteroides sp. 3_1_19]
          Length = 408

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 84/270 (31%), Gaps = 22/270 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPS-- 131
           +       A  +   F++                D   ++I    I+  +   K   +  
Sbjct: 122 RELIGKDYAKVTVSRFDTCLKYFKEMLLKQYHLKDIPMKEINNAIIQDYIHFLKSKKNLQ 181

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             + I+++  ++ +   A+  +++  NP +++     +       TKE+++  ++     
Sbjct: 182 ENTVIRYMKVVKKITNMALANDWIDKNPFMNI-HFHEQEVHKEFLTKEELEILRTKVFNV 240

Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242
            +    R  F F  ++GL   D      +HL  +       +     T  + +  +    
Sbjct: 241 PRLELVRDIFLFQCWTGLAFIDVSELKPEHLVTDNEGNIWIRKARQKTKIMCNIPLLDIP 300

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-A 298
             +L                      + + + K  A   G+ K  + H  R   +T+   
Sbjct: 301 LAILDKYKGYPICEKKGTLLPVPCNQKANSYLKEIADFCGIKKNLTTHTGRHTFSTVVTL 360

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
               +   +    G       + Y K  D+
Sbjct: 361 ANNVSLENVSKMLGHTNTKMTQRYAKVLDQ 390


>gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWSWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|186686693|ref|YP_001869887.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186469578|gb|ACC85376.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 297

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 83/284 (29%), Gaps = 28/284 (9%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            TL  L +++ +      LA ++  S++S    ++++ G +    I  + +   +     
Sbjct: 2   MTLAALATKFLERP---GLAKSTLRSYQSTIIPLLKEYGRWSIEIIDRQVLMEYLNHLTD 58

Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--------IRPWTKEDM 179
            + ++  +    +  LF +AV  EY+  NP   + R K   E         +R  T   +
Sbjct: 59  VSYTTHHRHQAVITALFSFAVDMEYLKSNPVAGLRRRKPSREQGEHATDEAVRYLTPYQL 118

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238
                   +  +       L  SG R ++     +  +           K          
Sbjct: 119 SILYRVIKKDVRLSALVRLLHTSGARIAEVLALNLDEIDLKARKFQVVGKGNKQRWCFYS 178

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNK----------SA 286
           +  +  L                          S      A K+ +              
Sbjct: 179 EVALNSLNHYIEYYRHPKHPALFTAQQPKTLEVSRLSYRMAHKSWIKLIRDSPELQEIRI 238

Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329
           H +R   AT     G     EL A  G +++     Y K   + 
Sbjct: 239 HDLRHTFATE--RVGLMGIEELRALMGHESIQTTLRYQKVTSQR 280


>gi|9507525|ref|NP_052532.1| shufflon-specific recombinase [Plasmid ColIb-P9]
 gi|132191|sp|P16470|RCI2_ECOLX RecName: Full=Shufflon-specific DNA recombinase
 gi|216411|dbj|BAA14093.1| site-specific recombinase [Plasmid ColIb-P9]
 gi|4512522|dbj|BAA75171.1| shufflon-specific recombinase [Plasmid ColIb-P9]
 gi|70610245|gb|AAZ05392.1| shufflon-specific recombinase [Salmonella enterica]
 gi|321271455|gb|ADW79545.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
 gi|321271652|gb|ADW79740.1| IncI1 shufflon-specific DNA recombinase Rci [Salmonella enterica
           subsp. enterica serovar Kentucky]
          Length = 384

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 3   SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 59

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 60  YRDVRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 180 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 236

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 237 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d]
          Length = 356

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 102 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 147

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++  +            N     + P            E + + +      ++ R
Sbjct: 148 NITLKNISGV------------NQSAGNKLPTHLNNEELEKFLEGIDKIEMSAKVRTRNR 195

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPI 250
           L  + ++++G+R +++ +  ++               K      V L    ++ L    +
Sbjct: 196 LLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWL 255

Query: 251 GKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +   +         N     +         +     AG+ +    AH +R   AT+   
Sbjct: 256 IERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQ 315

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +    G  +++ +  YT   D+ RL    
Sbjct: 316 KRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAA 350


>gi|270269254|gb|ACZ66246.1| Tn554-related, transposase A [Staphylococcus aureus]
          Length = 370

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/322 (8%), Positives = 82/322 (25%), Gaps = 70/322 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH------ 128
            Y K       ++N++ ++     +            ++++  +    +   K       
Sbjct: 29  RYLKYLDSVKKSLNTKKTYAYALKKFFVYLESKKICYKEVSFDNFVDFIRWMKTPFEYEN 88

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    +  +  + +   
Sbjct: 89  VLSYHRKGKSVSPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYPKKYKSFMHH 148

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +++  +                             + +   + L  +GLR  +   
Sbjct: 149 INKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLEKANNIRDKFLIQLLYETGLRIGEVLS 208

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 209 LRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 268

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + MN +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 269 SDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 328

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   +      Y    + 
Sbjct: 329 QERLGHSNIQTTINLYVHPTEE 350


>gi|254557695|ref|YP_003064112.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
 gi|254046622|gb|ACT63415.1| prophage Lp2 protein 2, integrase [Lactobacillus plantarum JDM1]
          Length = 377

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/355 (10%), Positives = 92/355 (25%), Gaps = 46/355 (12%)

Query: 11  VTKERTRHGKII-YYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           +     + GK     F  G G  RR +     E      ++  L  ++ +    +  R  
Sbjct: 4   IVSNPNQGGKPYKAVFTIGSGSSRRRKTKTFSELKAAKTWLHELELASDRGTTFDMAR-- 61

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             T       + +      +  N+  ++   +              +T   I+       
Sbjct: 62  -WTFLDYYKHWVEIYKKPFVTPNTLYTYTISYKHFQEFFVGVRLEDLTRNLIQKYFNQLD 120

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185
            +  ++ + L  +R   + A     +  N      R        +   K+ M        
Sbjct: 121 MSHETSRKDLIHIRSCLRDAASDGVLMRNAATGSIRIVADPAKTKSDDKKFMAIADYRKV 180

Query: 186 --------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236
                   +      RLA   +  + LR  +       ++     +++  ++        
Sbjct: 181 RDFLLDYNYDMNDVNRLALMIISQTALRVGECLALKYDNIDFLHGTVRVDESWDSHHQYL 240

Query: 237 ------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFS 270
                                          +L    I     F+  +++         +
Sbjct: 241 KEPKTEHVKRTLPLSPKALAILRQWIGYHRAILFKLGIANPQHFLLLNRRGRLPVAGNVN 300

Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322
             ++    + G+    S H +R   A++   +   +   +    G  +    E Y
Sbjct: 301 TSYRQLQIRLGITPKYSTHTLRHTLASMMITEKDISISYISRYLGHASTMITEKY 355


>gi|210618117|ref|ZP_03291902.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
 gi|210148979|gb|EEA79988.1| hypothetical protein CLONEX_04135 [Clostridium nexile DSM 1787]
          Length = 396

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 88/361 (24%), Gaps = 54/361 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K    +GK  + +         +P           +S        ++ +N      
Sbjct: 25  RYVYKYTDIYGKPQFIYSWK-----LVPTDKTPAGKRDDISLREKEAQIKKDLNDGIDTV 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
               T+  L  +  K++   ++   +    +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLFDK--KNSQRKNIKRATEKGRQYLMNALKNDPLGMRAIDTVKQSDAKEWAI 137

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                     +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 138 RMSEKGYAYKTIDNYKRSLKASFYMAIQDDCIRKNPFEFKLSDVLEDDTEQKVILTSEQE 197

Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++   F       S+       LL +GLR S+ C    Q    N       +      + 
Sbjct: 198 ERLLAFMETDKIYSKYYDEVVLLLETGLRISEFCGLTTQIDMQNRILNIDHQLLKDTEIG 257

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------------------------- 267
                 K          T       Q++                                
Sbjct: 258 YYIETPKTKNGKRELPLTERAYQALQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGN 317

Query: 268 ---QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                    K             + H +R    T  A+ G   + L    G   +     
Sbjct: 318 YVGMLRGLIKKYNKYHKDKLPNITPHSLRHTYCTNMANKGMNPNTLQYLMGHANITMTLG 377

Query: 322 Y 322
           Y
Sbjct: 378 Y 378


>gi|319643438|ref|ZP_07998061.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
 gi|317384843|gb|EFV65799.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 84/295 (28%), Gaps = 25/295 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVE 124
            +  +  Y K       A ++     + +  ++               ++    I     
Sbjct: 112 FREQLESY-KEKVGKEKAESTYRGLVADYKNLLLFMKSKKNTEDIVIEELDKSFIEDYYN 170

Query: 125 SRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T + A       + +++ L   A  + ++ ++P  S E            ++E++Q
Sbjct: 171 WMLGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYK-RRSFLSEEELQ 229

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN------NIFSIKTQKTGT 231
           +         + R   +  L+   +GL  +D       ++         +   + +    
Sbjct: 230 RIIRIELRYKRQRAMRDMFLFMCFTGLSYADLKAITYDNIHTDSDGGTWLMGNRIKTGVA 289

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            +   LP     +       ++                 +       K       + H  
Sbjct: 290 YVVKLLPIAIELIEKYRGADEKKDSPECVFPVGEYNAMRLSLGIIGRKCNCRAEVTPHIG 349

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           R   A ++   G     L    G K++   + Y +  +      +++ +IS  + 
Sbjct: 350 RHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK--VGEDTDKISEKIG 402


>gi|32470244|ref|NP_863468.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|195940258|ref|ZP_03085640.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str.
           EC4024]
 gi|299836175|ref|YP_003717744.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75]
 gi|132190|sp|P10487|RCI1_ECOLX RecName: Full=Shufflon-specific DNA recombinase
 gi|4903104|dbj|BAA77989.1| shufflon-specific DNA recombinase [Plasmid R64]
 gi|20521612|dbj|BAB91676.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|297374524|emb|CBL93603.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75]
 gi|323133131|gb|ADX20559.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323959213|gb|EGB54879.1| phage integrase [Escherichia coli H489]
          Length = 384

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 3   SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 59

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 60  YRDVRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 180 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 236

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 237 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
 gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195]
          Length = 354

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 91/282 (32%), Gaps = 31/282 (10%)

Query: 92  RISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW 146
             ++ +   ++            ++I    I   + S     + +S   +  ++   F +
Sbjct: 73  VSTYFNPLKKLFDYLTFYKLHSLKQIDEALIVEILASITGALSDASKKNYRIAVMNFFDF 132

Query: 147 AVRQEYVAINPCLSVERPKRK--------TEGIRPWTKEDMQQFKSFWSEGS------QP 192
             +Q        +     K          T+     +++++++F              + 
Sbjct: 133 LNKQNEEDSKAHIFDINLKNWAGISGARGTKLPEFMSEDELKKFLEAIDNADFKANTIRN 192

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
           +L  + ++++G+R S++    ++ +         +         L     +L+       
Sbjct: 193 KLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVMIKKELISTLLDNV 252

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                      F+N     +     S   +    KAG+ K    AH +R   AT+     
Sbjct: 253 KINYLSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKNGAHMLRHTFATLLYKKQ 312

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSV 342
                +    G  +++ +  YT   +++++L  K +  +S  
Sbjct: 313 KDLVLVQEALGHASLNTSRIYTHFDSEKLKLAAKVAEELSKK 354


>gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608]
 gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608]
          Length = 414

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 85/290 (29%), Gaps = 29/290 (10%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPS 131
           K     S A  +  +       +     D     I    I        R  ++ R    +
Sbjct: 116 KECVGKSRAEGTYQNLFYSDKLLTEFVKDKGMTDIAITTITEDLFEEYRFYLKKRGLATA 175

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEG 189
           +  ++L  +  L   AV Q  +  NP  + +  K + +    +      +   +    E 
Sbjct: 176 TMNRYLCWLSRLMYRAVSQRLIRCNPFENAKHEKAEQKIRFLQKSEVSKLMALRVIDKEA 235

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLL 245
            Q R  F F  ++GL  +D       H+Q       +  K ++   +  +       + +
Sbjct: 236 EQARRMFIFACFTGLAIADMEHLQFGHIQTAADGQKYIRKERQKTKVEFIVPLHPIAEAI 295

Query: 246 AMTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNKSA--HGVRKF 292
                 ++         K            + +  S+         G+ +    H  R  
Sbjct: 296 INQCKKEQPSMKEMQTVKDKDNSFIFRTNCSRSVMSVKLSIVGKACGIRERLSYHMARHT 355

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             T+S  AG     +    G  ++   + Y +  D      ++  R+   
Sbjct: 356 FGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNK--ISEDIDRLIRK 403


>gi|296877308|ref|ZP_06901348.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431828|gb|EFH17635.1| phage integrase family site-specific recombinase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 421

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 114/394 (28%), Gaps = 75/394 (19%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K    +G I Y  R          G+++        T        +          ++
Sbjct: 13  VIKTTKSNGTISYTQRGVYIGVDVKTGKKVT-SSITAKTLKSLDRKIIQARIEFEAKGST 71

Query: 64  PRKK--PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            ++       + L   +  S      + N+     SY D  +I K G++   +I +  I+
Sbjct: 72  IKETLLINNFEELAEAWFVSFVTWVTSQNTINRVRSYLDTYLIPKFGEYRPEEIKSADIQ 131

Query: 121 SGVESR-KHTPSSAIQ---------------FLTSMRVLFKWAVRQEYVAINPCLSVERP 164
             V    + +  S                   +  +  +F + +    ++ NP  +V+ P
Sbjct: 132 IWVNKLAQQSKKSVESGVKKSKKGHAKDFGAVIYKLSDIFDYGITNFDLSHNPARTVKIP 191

Query: 165 KRKTEGIRPW---------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +                 T  +            + ++  + LL S LR ++     + 
Sbjct: 192 PKPKVVKERIMVLHGEDLATWLNYLTTLPDTRANRRFKVICDTLLASALRINELLALTIN 251

Query: 216 HLQNNIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMTPI 250
            L  N   I   KT                              V +P   +  L     
Sbjct: 252 DLDFNANEIIVNKTLMWKAGNKKLGIKGEIVCKNSAKTDAGNRRVAVPRQVLDDLKAFHA 311

Query: 251 GKETFFINN------------DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
               +F+++                M         K + T+ G+     H  R   A++ 
Sbjct: 312 EMSDYFVSHDLPTVDLIFPTIYGNYMCDRNERATLKKRLTELGLPNYGFHLFRHTHASLM 371

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +AGA   EL    G K++     TY + A + +
Sbjct: 372 LNAGANWKELQIRMGHKSIKTTMDTYAELAPKKK 405


>gi|227329557|ref|ZP_03833581.1| prophage integrase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 388

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 88/364 (24%), Gaps = 36/364 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------- 59
            +  E   +GK  + +R    G      L          A            +       
Sbjct: 24  GLYLEVKPNGKKAWRYRFKLNGKSSMFALGEYPTVKLAEAREKCEQARKQVADGVSPTQA 83

Query: 60  ----YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI 114
                I        T + +  E+ +   W   A  ++       ++I+    G    R+I
Sbjct: 84  RQLDKIRKVNDASNTFELIAKEWLQMKDW---ADITKTRRLDMLERIVFPAIGKLPIREI 140

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGI 171
           T  HI   ++   ++  P+ A +   ++  +F+ AV       +P     +         
Sbjct: 141 TPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLRADSDPVWPVRKALPANKTQH 200

Query: 172 RPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +               + S+         +            +     +   +N      
Sbjct: 201 KQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLARPAEVTEAEWAEFDLDNGLWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----QFSIWFKAKATKAGV 282
                     +     + ++M    +                     S   +      G 
Sbjct: 261 ATRMKARREHVIPLPSQAVSMLRTLQGLTGHRQHIFPGRDNPRGPMTSHSLRQLLKSLGW 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA---DRIRLGIKNS 336
               S H  R   +T   + G     + A       +     Y       +R  +  + +
Sbjct: 321 SGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNVRRTYNHATYLDERKVMMQEWA 380

Query: 337 RRIS 340
            ++ 
Sbjct: 381 DKLE 384


>gi|209964588|ref|YP_002297503.1| phage integrase [Rhodospirillum centenum SW]
 gi|209958054|gb|ACI98690.1| phage integrase [Rhodospirillum centenum SW]
          Length = 442

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 88/305 (28%), Gaps = 42/305 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES 125
            P T++  ++ Y  +         +R  F++     I+   G  D  K+T+  I   +E 
Sbjct: 118 GPWTVRDAVASYLATLQN----ARTRKEFDTEAKAHILPALGGIDLSKLTSGRITKWLEG 173

Query: 126 RKHTP-----------------------------SSAIQFLTSMRVLFKWAVRQEYVAIN 156
             ++P                              +A   L  ++     A R + V  +
Sbjct: 174 IANSPPRLRTKTKAAERRTADVDMSDPDVIRRRRHTANHQLKILKAALNHAYRGKRVETD 233

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
              +  RP +     R       +  +   +     R      L +G R  +  R  VQ 
Sbjct: 234 SAWATVRPFKGVSEARVRWLAQDEAVRLVNASAPDLRAMVRGALLTGCRYEELARLRVQE 293

Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSI 271
           +   N    ++  K+G    V L +  +             +  F   + +    +    
Sbjct: 294 IDLLNGSVYVRLSKSGKPRHVVLTEEGVAFFRDHTAGRTADDLVFTRANGEPWGKSHQHR 353

Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
             K     A +    S H +R   A+  A  G +   + A  G       E  Y   +  
Sbjct: 354 PIKDACAAAKIKPAISFHILRHTHASWLAQRGVSMQVIAAQLGHSDTRITERHYAHLSPS 413

Query: 329 IRLGI 333
                
Sbjct: 414 HHAAA 418


>gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
 gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella
           denticola F0289]
          Length = 404

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 87/280 (31%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +   S  ++ S   ++           D  + ++T   I     
Sbjct: 109 LDMLIRE-KESHIGIDIKEESMSAYHSTRKRLQEFIQKKYHVSDLAFSQLTENFIYELQT 167

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  S+  +    ++ + + A R+          V   + + +  +   KE + 
Sbjct: 168 FCLGELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGEKKAPKALDKEALD 227

Query: 181 QFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K+   +  +      R  F F  Y G    D      +H+  +       K       
Sbjct: 228 KLKALRFDELEEEMEAVRDVFLFACYIGAAYCDLMELSKKHIVRDDAGSLWLKFN--RQK 285

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     +    +    KA   +AG+    ++H  R
Sbjct: 286 TGVLCRIKLLPEAVRLIEKMHSDEREALLPFIKYPTYQSCLKALRLRAGISFPFTSHTAR 345

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 346 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 385


>gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36]
 gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36]
          Length = 394

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 81/262 (30%), Gaps = 19/262 (7%)

Query: 93  ISFESYFDQIIRKSG--DFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
             +  Y  + IR  G  D  +  IT    T  I     +  H PS     L  ++ L   
Sbjct: 132 KMYHYYLGEYIRSLGKEDMLFTDITEEFGTNFILYLKTNYPHKPSYRNHCLCWLKRLVYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSG 203
           AV +  +  NP   ++  K+    +   +K  +Q+  S           R  F F  + G
Sbjct: 192 AVDKGILRYNPLDDIKYEKKAPTKLMYISKNQLQEIMSHPKPDPLQELARRTFIFSCFCG 251

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L   D       H+       K  +T         + F+ L  +       +   +D + 
Sbjct: 252 LAYVDVRNLYPHHIGTTAEGRKYIRTY--RKKTSVESFIPLHPVAEQIISLYNTTDDSKP 309

Query: 264 MNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
           +           +  + G       N S H  R    T+   AG     +    G   + 
Sbjct: 310 IFPLPIRSMIWFEIHELGFSLQFKHNLSYHQSRHTFGTMMVSAGVPMESISKMMGHTNIR 369

Query: 318 QAETYTKGADRIRLGIKNSRRI 339
             + Y K  D      ++  ++
Sbjct: 370 TTQGYAKVTDDK--ISEDMDKL 389


>gi|294783290|ref|ZP_06748614.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480168|gb|EFG27945.1| site-specific recombinase, phage integrase family [Fusobacterium
           sp. 1_1_41FAA]
          Length = 405

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS--GDFDYRKITTKHIRSG 122
            K  +    I  Y K   + ++   +  S+ S     I+      +   + I T  I+  
Sbjct: 82  DKEISFCNFILGYVK-MRFKTIDDATYSSYLSNTKISILPYFFKENKKLKDINTFDIQKY 140

Query: 123 V-ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                     SA     +   + + FK+A +   + INP L+VE+PK+     + +  E 
Sbjct: 141 YFHELNVRGVSANTVIHYHNLLSLTFKYAQKIGVININPMLNVEKPKKVRYIAKVYNYEQ 200

Query: 179 MQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           +++         +   L      + GLR S+        +     ++    T T      
Sbjct: 201 IKEMLEILKREDKALYLGVVITSFFGLRRSELLGLKWSAINFADNTMSIIHTVTETNLNG 260

Query: 233 ----------------ITVELPDGFMKLL----------------AMTPIGKETFFINND 260
                            +  LP    ++L                      +E  ++N  
Sbjct: 261 KNVLIKKDKTKSTAGLRSFVLPGSIKEMLLELKEEQKRNKERLGKGYYKKDEEYVYVNEG 320

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +       +  F+    K  + +   H +R   ATI  ++     ++    G  +    
Sbjct: 321 GELHKPKFLTNGFRKFLAKHNLTHIRFHDLRHSCATILCESNVNVKDIQMFLGHSSAKTT 380

Query: 320 E-TYTKGADRIRLG 332
              Y    ++  L 
Sbjct: 381 MDIYVHQMNKSNLS 394


>gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
 gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27]
          Length = 87

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
              +  ++ +  +   KA   +AG+ K  SAH  R   AT     G     +    G + 
Sbjct: 1   MTRRHHIDQSLINKAIKAAVRQAGITKRVSAHTFRHSFATHLLQRGIDIRTIQDLLGHRD 60

Query: 316 VDQAETYTKGADR 328
           ++    YT   ++
Sbjct: 61  LETTMIYTHVLNQ 73


>gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601]
 gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601]
          Length = 141

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 263 KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +    F +  K  A +AGV     + H +R   AT     GA    +    G   V   
Sbjct: 58  HLTRHAFYLQIKDMAVRAGVSPAKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATT 117

Query: 320 ETYTKGADRI 329
           E YT   +  
Sbjct: 118 EIYTHVLEER 127


>gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170]
 gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170]
          Length = 368

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 87/266 (32%), Gaps = 21/266 (7%)

Query: 92  RISFES---YFDQIIRKSGDF-DYRKITTKHIRSGVESR-----------KHTPSSAIQF 136
           R  +E     ++   +  G    +  +T +      +               + +SA  +
Sbjct: 105 REKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFKDYLLKCKQINHPNAYISRNSAAGY 164

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++ R L K A +++ +  N    +E+ + K       T +++++  +   +    + A 
Sbjct: 165 YSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQAS 224

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F   +GLR SD  +   +  +         +  T       +  + +          + 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYYIRICTE--KTETEATLPISQEALELCGEWG 282

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                + +  +      K    +AG+ K  + H  R   A I    G   + +      K
Sbjct: 283 SGKVFKGLTRSMTHHPLKQWIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 342

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
            V   + Y    +  +   + + +IS
Sbjct: 343 NVTTTQIYADLVNSKKR--ETANKIS 366


>gi|323138766|ref|ZP_08073831.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322396013|gb|EFX98549.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 19/263 (7%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLT 138
           +     LA  +  ++ S     +   G+          IR  +  R    S A       
Sbjct: 130 AREQQGLAETTLATYASAIIPFVAALGEDP-AAYDAAAIRGYMLGRAGAVSVARLNGIGV 188

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS--EGSQPRL 194
           ++R   ++ +           ++ +          R   ++D+ +  +        + R 
Sbjct: 189 AIRAFLRFLIAMGRCPPGRDRAMPQAAEWRLASIPRFLPEDDIARIIAACESERRLRDRA 248

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLL 245
               L+  G+R S+  R G   +     SI+    G           +   L        
Sbjct: 249 IILLLVRLGMRASEVARLGFDDIDWRQGSIRLHGKGRREELLPLSQEVGDALIAYIECAR 308

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGA 302
                       +   + ++        +    +AGV       H +R  +AT     G 
Sbjct: 309 PAFAARALFLTESAPLRPIDRGTIKCVVRRALERAGVESRFKGAHVLRHSAATSMLRHGV 368

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
           +   +      ++      Y K 
Sbjct: 369 SLAGVSIVLRHRSPAMTVHYAKV 391


>gi|254440879|ref|ZP_05054372.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
 gi|198250957|gb|EDY75272.1| site-specific recombinase, phage integrase family protein
           [Octadecabacter antarcticus 307]
          Length = 244

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 77/230 (33%), Gaps = 11/230 (4%)

Query: 96  ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155
            +     ++        +I+             +PS+A   L S R ++  A R   +  
Sbjct: 2   RAQLTLHLKDWMRLPLDEISKAMTVRRHHDMAGSPSAANHVLRSFRTIYNHARRTGDLPE 61

Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            P +++E  + K +G R        +           R+ +E +L++GLR ++      +
Sbjct: 62  CPTMAIEWFEDKPDG-RIIEDLKHWRKTIDDLPNPIHRIFYELILFTGLRKTEVFTLKWE 120

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275
            +Q +   +   K G    + +     ++LA        +         +    S     
Sbjct: 121 QIQEDRIHLPMTKNGRSFDLPISQLHHEILAPLRPLSRDWVF------PSPKSESGHITR 174

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
                 +  + H  R+  AT++ +AG     +        +    + YT+
Sbjct: 175 PER---LKYNPHMHRRTFATVAMEAGVLEEIVGRLLNHTPLSITGQRYTR 221


>gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
 gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus
           luteus NCTC 2665]
 gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus
           NCTC 2665]
          Length = 312

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 65/260 (25%), Gaps = 48/260 (18%)

Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               T S+  + L+++   ++ A R          + +    +  G +P+     +    
Sbjct: 43  EHHCTESTVNRKLSALSAFYQHAARHGVDLGELLRAWQPAGGRGSGWKPFLHHISKGKPQ 102

Query: 185 FW--------------------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
                                        +  + R  F  L  +G+R  ++     + + 
Sbjct: 103 ARRAIVLSAQSKLPRVLSAAEVQTILDACDHLRDRFLFAVLFDTGMRIGEALGLRHEDIA 162

Query: 219 NNIFSIK--------------TQKTGTIITVELPDGFMKLLAMTP------IGKETFFIN 258
                I                      ++ EL   +   L +              +  
Sbjct: 163 AAESQITVQRRVNDNGARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGR 222

Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV-D 317
                +  T      K    + G++   H  R  +AT     G     +    G   +  
Sbjct: 223 PHGHPLTYTAVYDLVKRLRRRTGIDFDPHWYRHTAATRMLRDGVPIEVVSKLLGHADITT 282

Query: 318 QAETYTK-GADRIRLGIKNS 336
               Y    A+  R  ++ +
Sbjct: 283 TTAVYGHLSAEDARKALEEA 302


>gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1]
 gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1]
          Length = 349

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 45/302 (14%)

Query: 67  KPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT------ 115
           K  TL  ++++Y  S        + N+  S++  F  +             KIT      
Sbjct: 2   KTNTLLTVLTDYFMSYLPDVKGYSQNTITSYQYAFQLLYDFLLEEKGLPPEKITFKSLSS 61

Query: 116 ---TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-----YVAINPCLSVERPKRK 167
              +K++     +R  +P++     T++    K+A+++          +      +   K
Sbjct: 62  EIISKYLTWLEVNRGCSPATRNLRRTAISSFSKFALKKNLGEALQFHSSVAEIPPKNTHK 121

Query: 168 TEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
              I+ +TKE++    +        G +  +    L  SG R  + C   +  +     +
Sbjct: 122 NTDIKYFTKEEIAIILNMPDTGRAIGKRDVMLLSLLYASGARAQELCDLTLNDIYLGKET 181

Query: 224 IKT--QKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFS 270
                 K      V +P     +L                  +  F +   +KM+ +   
Sbjct: 182 NIRLVGKGNKARLVTIPQNCAVMLKNYLESRNLDSSSPKDRLKHIFSSQTNEKMSISCVE 241

Query: 271 IWFKAKATKAGV---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              K    K+             + H  R   A    + G +   + A  G  ++     
Sbjct: 242 EIVKKYVIKSKKAYPQLFKRKTYTPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTI 301

Query: 322 YT 323
           Y 
Sbjct: 302 YA 303


>gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium]
          Length = 162

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +                   +  ++ T      K   T+  +NK    H  R   AT 
Sbjct: 73  WMWQYAFPSNQRCFAPDLGTMKRHHVHQTGVQKAIKRAVTRCNINKRVGSHAFRHSFATH 132

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 133 LLQNGHDIRTIQELLGHKDVSTTMIYTHVL 162


>gi|317485619|ref|ZP_07944495.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316923156|gb|EFV44366.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 442

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 105/342 (30%), Gaps = 26/342 (7%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPRKKP 68
           R  + +  +R     + R+           + +                +  ++S     
Sbjct: 9   RRRQWVLRYRDPWSGKQRIKSFSTEGEARQFEAVQAEMHIRERELMRRAKRRMSSASATK 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+  L+  Y  +         +R +   + + +    G      +T   + +  E ++ 
Sbjct: 69  ATVAELLERYAGTLEN----PTTRSTTTQHAEPLTAIFGHRRAHCVTCDDVLAWCEVQRQ 124

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                S+  + ++ +R  + WAVR   +  NP +S+   K K + I P + ++ +     
Sbjct: 125 RGVGQSTVHRRVSILRAAYGWAVRARLLLSNPLVSLRIAKPKAQRIAPPSVKEARLLYDA 184

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDG 240
            +   Q  +       + +  S+  R     +      I+              V + D 
Sbjct: 185 AAPHIQRVIVLGMATGARIGPSELFRLRWSDVDVGTGVIRMPNAHKGAGEESRDVPIRDD 244

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296
            + LL                          S  +     +AG+ +    + +R   A++
Sbjct: 245 VLGLLRRWHEEDRQTGCAYVIAYKGRPVRSISSGWHNALRRAGIARRIRPYDLRHAFASL 304

Query: 297 SADAGATAHELMATYGWKTVDQ-AETYTKGA-DRIRLGIKNS 336
           +   GA    +  T G K +      Y     ++ R  +  +
Sbjct: 305 ALVYGADIKCVAETMGHKNITMLLSVYQHTLFEQRRRAVNAA 346


>gi|307823333|ref|ZP_07653562.1| integrase family protein [Methylobacter tundripaludum SV96]
 gi|307735318|gb|EFO06166.1| integrase family protein [Methylobacter tundripaludum SV96]
          Length = 351

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 94/338 (27%), Gaps = 28/338 (8%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M+  +   P +     + G+  +  +   GRR+       S    A           R+ 
Sbjct: 1   MSKKI---PGLV----KRGECWHIDKVIKGRRV-CQSTGTSDLEEAQCYLARLMEEHRQA 52

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                +     K   ++Y   +   SL   +      +   +    GD     I    ++
Sbjct: 53  TVYGVRPKRIFKEAATKYLLESQKASLKDAAL-----HLKLLDEYIGDLPLESIHMGTLQ 107

Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRP 173
           S ++ R+       +    L ++R +        + +  +         +   + +  +P
Sbjct: 108 SYIQDRRTQGVKNRTINYALQTVRHILNLAAMEWIDEHGLTWLATAPKIKLLSQLDARKP 167

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQK 228
                 QQ + F            F + +G R  + C    +  +          +    
Sbjct: 168 SPLSWEQQARLFGELPEHLAKMALFKVNTGCREQEVCSLRWEWEEYIPELKASVFVIPAH 227

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK-S 285
                   +     +  A+    +          K N   T  +  ++    + G+ +  
Sbjct: 228 VVKNRMARVVVLNSEARAVIDQLRGQHSEYVFTYKGNRVLTMNNTAWQKARKRVGLTQVR 287

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            H ++         A  +  +     G K+    + Y+
Sbjct: 288 IHDLKHTFGRRLRAASVSFEDRQDLLGHKSSRITDHYS 325


>gi|296330591|ref|ZP_06873069.1| integrase (phage-related protein) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674639|ref|YP_003866311.1| integrase (phage-related protein) [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152273|gb|EFG93144.1| integrase (phage-related protein) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412883|gb|ADM38002.1| integrase (phage-related protein) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 369

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 87/346 (25%), Gaps = 36/346 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           + GK   Y      + IR              S +     K     SPR           
Sbjct: 6   KRGKTWQYCVSAKPKPIRKGGFKTKKEAQVAASEIE---EKLRKSMSPRVTKVLFDEYFK 62

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAI 134
            +        +   +R  +     +I           IT +  +  +      H   +  
Sbjct: 63  SWVDVYR-DDIGDITRSGYYITLGEISESFAGRYINDITKREYQEFLNDFGAVHAKETVR 121

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
           +  T +R   + A+ +  +  +     +     + K    +     + Q+  +   E   
Sbjct: 122 KLNTHIRACVQEAIEEGIIQFDFTRKAKLTGSVESKRPEEKHLNYVESQKLLNELYERKD 181

Query: 192 P---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---- 244
                      L SG+R ++           ++  I   KT      +            
Sbjct: 182 KSIGYYLLILALTSGMRFAEIVGLTTDDFNFDLNEITINKTWDYKKGKGFAKTKNASSNR 241

Query: 245 -LAMTPIGKETFFINNDKQKMNATQ-----------------FSIWFKAKATKAGVN-KS 285
            + M       F    D+   N                     +   K   T   +   S
Sbjct: 242 TIKMDSNTMNLFKKLFDEMPNNIHNLVFYSPRSSKKVLTNEFVNKILKKTLTDLNIESIS 301

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330
            HG+R   A+I      + + +    G   +D     Y+     +R
Sbjct: 302 VHGLRHTHASILLYKKISIYYVSERLGHAKIDTTLNYYSHVIKELR 347


>gi|294490401|gb|ADE89157.1| site-specific recombinase, phage integrase family [Escherichia coli
           IHE3034]
 gi|327252209|gb|EGE63881.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 416

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQGFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S ++ + 
Sbjct: 375 YARQRAYMLQQWADMIDSWINGEH 398


>gi|167763534|ref|ZP_02435661.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
 gi|167698828|gb|EDS15407.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC
           43183]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 84/295 (28%), Gaps = 25/295 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVE 124
            +  +  Y K       A ++     + +  ++               ++    I     
Sbjct: 112 FREQLESY-KEKVGKEKAESTYRGLVADYKNLLLFMKSKKNTEDIVIEELDKSFIEDYYN 170

Query: 125 SRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               T + A       + +++ L   A  + ++ ++P  S E            ++E++Q
Sbjct: 171 WMLGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYK-RRSFLSEEELQ 229

Query: 181 QFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQN------NIFSIKTQKTGT 231
           +         + R   +  L+   +GL  +D       ++         +   + +    
Sbjct: 230 RIIRLELRYKRQRAMRDMFLFMCFTGLSYADLKAITYDNIHTDSDGGTWLMGNRIKTGVA 289

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289
            +   LP     +       ++                 +       K       + H  
Sbjct: 290 YVVKLLPIAIELIEKYRGADEKKDSPECVFPVGEYNAMRLSLGIIGRKCNCRAEVTPHIG 349

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
           R   A ++   G     L    G K++   + Y +  +      +++ +IS  + 
Sbjct: 350 RHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK--VGEDTDKISEKIG 402


>gi|303253788|ref|ZP_07339923.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248455|ref|ZP_07530475.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250673|ref|ZP_07532610.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262546|ref|ZP_07544186.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302647372|gb|EFL77593.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855023|gb|EFM87206.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857281|gb|EFM89400.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306867758|gb|EFM99594.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 267

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 78/264 (29%), Gaps = 16/264 (6%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           ++K      LA NS  ++     Q  +   +     +T  +++        ++ P +   
Sbjct: 5   FQKYLSNKDLAKNSISAYLFAVKQFYKLYPN-----VTRGNLKEYKVFLIDRYKPQTVNL 59

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            L ++    ++  ++++      +  +           +     +  +            
Sbjct: 60  RLRAINCYLEFIKKEKWKLSFVKVQQKPFLENVISEADYYYFKQKLKEDN---ELYWYFV 116

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMTPIGK 252
             F+  +G R S+  +  V+H+      + ++                    L  T    
Sbjct: 117 IRFMAATGSRVSELIQIKVEHINIGYLDLYSKGGKLRRIYIPQALQQECQIWLKQTNKIS 176

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F+N   +++     +   K  A +  ++      H  R   A    +       L  
Sbjct: 177 GFIFLNKYGERITTRGIAGQLKILAKRYKLDPKVVYPHSFRHRFAKSFLERFNDIAFLAD 236

Query: 310 TYGWKTVDQAETYTKGADRIRLGI 333
             G ++++    Y +     +  I
Sbjct: 237 LMGHESIETTRIYLRKTATEQQAI 260


>gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
 gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254]
          Length = 91

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                     A A +AG+ K  + H  R   AT   + G     L    G  ++   + Y
Sbjct: 11  TTRSLRRLISAHAHEAGIQKEITPHVFRHSFATELLNNGVDIRYLQELLGHSSIATTQVY 70

Query: 323 TKGA 326
           T  +
Sbjct: 71  THVS 74


>gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+    + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGIMKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +     +  +       +  ++             +AGV K  + H +R   AT 
Sbjct: 74  WMWQYVFPADRLSNDPRGGGIRRHHVDPRSIQRALHDALRRAGVRKPATPHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++G     +    G K V     YT   
Sbjct: 134 LLESGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781]
 gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763]
 gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300]
 gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224]
 gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948]
 gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937]
 gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102]
 gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819]
 gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796]
 gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554
 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554
 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554
 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus]
 gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus]
 gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315]
 gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus N315]
 gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50]
 gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus]
 gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus]
 gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252]
 gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A]
 gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A]
 gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus]
 gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3]
 gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus]
 gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus]
 gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus]
 gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781]
 gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763]
 gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719]
 gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300]
 gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224]
 gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948]
 gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937]
 gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20]
 gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20]
 gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus]
 gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102]
 gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus
           04-02981]
 gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus]
 gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424]
 gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819]
 gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796]
 gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus]
 gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00]
 gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 361

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/321 (8%), Positives = 71/321 (22%), Gaps = 65/321 (20%)

Query: 73  WLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
            LI    ++ K       + N+  ++  +   +             I  + +   V   +
Sbjct: 24  QLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLR 83

Query: 128 H----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +                  ++    L  +     +  R             + +     +
Sbjct: 84  YPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFL 143

Query: 172 RPWTKEDMQQ---------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               K   Q+                              + +L    +   GLR  +  
Sbjct: 144 HHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVL 203

Query: 211 RAGVQHLQNNIFS--------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---- 258
              ++ +                 +    +          +L+++        +      
Sbjct: 204 SLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEH 263

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                        + +         +    + G+  ++H +R   AT     G     + 
Sbjct: 264 DYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQ 323

Query: 309 ATYGWKTVDQA-ETYTKGADR 328
              G   V     TY   +D+
Sbjct: 324 KRLGHAHVQTTLNTYVHLSDQ 344


>gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
 gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM
           16608]
          Length = 334

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 92/276 (33%), Gaps = 18/276 (6%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           K+ ++    + +        +  V +  + ++    + R   +  + +I  K I      
Sbjct: 50  KEESSFLDWMEQ---EIDKETYTVGTIANHKATMAVLRRFKRNMTFTQIDYKCICDFENF 106

Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKE 177
            K    +       +   R     A+ +E +   P           +            E
Sbjct: 107 LKGAGYAVNTIAKFMKIFRRFVNLAIDEELMTAYPFRKYHIKTENVQKQSLTERELKRIE 166

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTII 233
           + +  ++   E  +    F F +YSGLR SD      QH+    +N    ++ QKT   +
Sbjct: 167 EKEAREALTEEEGKVIKGFLFSVYSGLRFSDIVNVTKQHVKNIYRNKWVVMRMQKTDHEV 226

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
            + +   F    A      +T      +   NA   ++  K    +  +++  + H  R 
Sbjct: 227 RIPISKMFGGKAAAMVQENKTTTGKLFQLPCNARC-NLVLKRVLKRFNIHRHITFHCARH 285

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
             AT+    G +   +    G +++   + Y+   D
Sbjct: 286 TCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAVKD 321


>gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A]
          Length = 368

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 87/266 (32%), Gaps = 21/266 (7%)

Query: 92  RISFES---YFDQIIRKSGDF-DYRKITTKHIRSGVESR-----------KHTPSSAIQF 136
           R  +E     ++   +  G    +  +T +      +               + +SA  +
Sbjct: 105 REKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFKDYLLKCKQINHPNAYISRNSAAGY 164

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++ R L K A +++ +  N    +E+ + K       T +++++  +   +    + A 
Sbjct: 165 YSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQAS 224

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F   +GLR SD  +   +  +         +  T       +  + +          + 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYYIRICTE--KTETEATLPISQEALELCGEWG 282

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                + +  +      K    +AG+ K  + H  R   A I    G   + +      K
Sbjct: 283 TGKVFKGLTRSMTHHPLKQWIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 342

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
            V   + Y    +  +   + + +IS
Sbjct: 343 NVTTTQIYADLVNSKKR--ETANKIS 366


>gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165]
 gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165]
          Length = 417

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/377 (11%), Positives = 91/377 (24%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           ++        ++ ++      
Sbjct: 44  RYAYKYIDTFGKPQFVYSWK-----LVPTDKTPAGKRDDIALREKEKEIQKDLDDGIDHI 98

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++   ++   +     +   K G      +     +      
Sbjct: 99  GKKMTVCQLYAKQIRHRANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRM 158

Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A++ + +  NP         +  TE   P +      
Sbjct: 159 KEKGYGFKTINNHKRSLKAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAA 218

Query: 182 FK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--------------------- 217
           F           +       LL +GLR S+ C      +                     
Sbjct: 219 FLSFVQHDKVYQKYYDEIIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGY 278

Query: 218 -----------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                      +    S K  +    +  +       +L               K  +N 
Sbjct: 279 YVETPKTKSGNRVIPMSEKVLEAFQRVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNY 338

Query: 267 TQ-FSIWFKAKAT--KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F    +      K  + K  + H +R    T  A+AG     L    G   ++    
Sbjct: 339 ESMFRGLVRKYTKTQKVALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLN 398

Query: 322 Y-------TKGADRIRL 331
           Y       T   +  RL
Sbjct: 399 YYAHTTSETSITEMKRL 415


>gi|209516335|ref|ZP_03265192.1| integrase family protein [Burkholderia sp. H160]
 gi|209503271|gb|EEA03270.1| integrase family protein [Burkholderia sp. H160]
          Length = 432

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 105/332 (31%), Gaps = 30/332 (9%)

Query: 44  IPAYMSALTGSTPKREYINS--PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101
             AY +   G +P R  +       +  T      +Y   +    LA ++R   +S +++
Sbjct: 86  DQAYGAIQRGESPSRAKVEKRVEVSEALTFGKWAEKYFVDSA---LAESTRSMRKSVYER 142

Query: 102 -IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPC 158
            +  + G     +IT   + +  E  +   ++A  +Q    +  ++++   +     NP 
Sbjct: 143 NLASEFGRLKLDEITPARLMARCEKIRERGAAAPAVQARDIVLQVYRFVQARGLKVDNPA 202

Query: 159 LSVERPKRKTEGIRPWT-----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
            ++      T   R  T                      RLA  F+L + +R S+   A 
Sbjct: 203 EAIRPSAIATFKPRDRTLTPAEIHVFFSALERTPTMPTLRLAIRFMLLTLVRKSEFILAM 262

Query: 214 VQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269
              +           +  K G    V L    + +L             +  +   A+  
Sbjct: 263 WGEVDFDAAVWTIPKERMKAGRPHNVYLSQQALDILVAFKTCFGASSYVHPGRYETASPI 322

Query: 270 SIWFKAKATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           S     +   + V             + H +R+ ++T+  +AG     +      +    
Sbjct: 323 SAATLNRVIDSTVKLIHDEGADFDPFTVHDLRRTASTLLHEAGFNTDWIEKCLAHEQRGV 382

Query: 319 AETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
              Y K   A + R  ++    +     + +P
Sbjct: 383 RAVYNKAEYAGQRREMLQAWADMLDSWIATNP 414


>gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 368

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 87/355 (24%), Gaps = 51/355 (14%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G   Y +          P P      P+            E       K  TL  L ++ 
Sbjct: 5   GNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKKMTLCQLYAK- 61

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134
            ++    ++  +++   E     +   K G      I     +      K      ++  
Sbjct: 62  -QNTQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRMKDKGFSYNTIN 120

Query: 135 QFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               S++  F  A++ + V          E  +  T+     T+E  Q   SF    +  
Sbjct: 121 NHKRSLKASFYIAIQDDCVRKNPFDFKLSEVIENDTKEKVALTEEQEQALLSFIKADNVY 180

Query: 193 RLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------- 229
              ++ +L    +GLR S+ C   V  +      +                         
Sbjct: 181 HKYYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGYYIETPKTKSGA 240

Query: 230 ------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---- 273
                          +  + P     ++               K  ++     +      
Sbjct: 241 RQVPLSRETIQAFQRVMKKRPKAEPFVIDGRGNFLFVNHKGKPKVAIDYNMLFVRMVEKY 300

Query: 274 -KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA 326
            K        + + H +R    T  A       +L    G   +      Y   +
Sbjct: 301 NKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMNWYAHAS 355


>gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 187

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 58/162 (35%), Gaps = 12/162 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + +L  + ++++G+R S++    +  +         +         +     +L+     
Sbjct: 24  RNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVMIKKELIYDLLK 83

Query: 251 GKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                +I        N     +  +  S   +    +AG+ K    AH +R   AT+   
Sbjct: 84  NVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYK 143

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRIS 340
                  +    G  +++ +  YT    D+++L  + ++ +S
Sbjct: 144 KQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELS 185


>gi|294790582|ref|ZP_06755740.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
 gi|294458479|gb|EFG26832.1| DNA integration/recombination/inversion protein [Scardovia
           inopinata F0304]
          Length = 320

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 90/287 (31%), Gaps = 29/287 (10%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128
                +E+ ++   G++   +   +     QI     +     +     ++ +   +R H
Sbjct: 18  FSRYFAEWIETYKRGAVTQITLNKYLMTLKQIKLLIPNTKVADLNRIVYQNLLNTYARTH 77

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFW 186
              + + F   ++     A+    +  +P     ++   ++TE I+   + ++++  +  
Sbjct: 78  ERQTVLDFHHQLKAALSDAIEDGLLRKDPTRKAVIKGKAKQTEKIKFLNQAELKKLLNML 137

Query: 187 SEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------- 231
                  L +       +GLR ++     VQ +      I   KT               
Sbjct: 138 CLDHDHLLDYTILITAKTGLRFAEVLGLTVQDINFKQLVIDVNKTWNYKTKAGGFAPTKN 197

Query: 232 ---IITVELPDGFMKLLAMTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVN 283
                 + +       L       +             ++++ +  +   ++   +AG+ 
Sbjct: 198 DSSRRKIHIDWQLALQLKEFIDTSDHCEQSDSLLFIQGKRIHNSTVNSRLESLCIEAGIP 257

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
             + HG+R   A++    G +   +    G   +   + TY      
Sbjct: 258 VITFHGLRHTHASLLLYKGVSIASVAKRLGHANMATTQSTYLHIIQE 304


>gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1]
          Length = 353

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 76/334 (22%), Gaps = 71/334 (21%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
           L   Y  +     L   ++ ++   +D       G    + +    +             
Sbjct: 17  LFDRYISTK--TELRSTTKANYLYTWDHFIRDTFGKKKIKDVKYSDVLFFYTDLITNKGL 74

Query: 133 AIQFLTSMRVLFKWAV---------RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
            +  L S+  + +            R+  V        +R     +  R  T E  ++F 
Sbjct: 75  QVNTLESINTVLRPTFELAVRDDIIRRNPVDGAYAEVKKRNGGARKSRRALTVEQQREFI 134

Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232
            + ++          F FLL +G R  ++       +     +I    + T         
Sbjct: 135 DYVAKNPFFFHWYPFFVFLLGTGCRIGEAIGIRWDDVDMKKRTININHSLTYYTRYDNSF 194

Query: 233 ---------------ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263
                           T+ +     ++L                        F N     
Sbjct: 195 KCEFRVSEPKTEAGIRTIPMMGPVYEVLKSEYQRQQEEGFCVAEVDGMTNFIFTNRFGNP 254

Query: 264 MNATQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHE 306
            N    +   K                           S H  R   A+   +       
Sbjct: 255 HNPQAVNRAIKRIVDTHNAEEEVEAKKKKREPIMLPRFSCHIFRHTFASRFCENETNVKV 314

Query: 307 LMATYGWKTVDQAE-TYTKG-ADRIRLGIKNSRR 338
           +    G   V      Y +   +  R  ++   +
Sbjct: 315 IQEVMGHADVSTTMNIYAEANPEVTREALEKLAK 348


>gi|194434223|ref|ZP_03066490.1| prophage integrase [Shigella dysenteriae 1012]
 gi|260856163|ref|YP_003230054.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|300935118|ref|ZP_07150148.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|194417552|gb|EDX33654.1| prophage integrase [Shigella dysenteriae 1012]
 gi|257754812|dbj|BAI26314.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|300459613|gb|EFK23106.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 21-1]
 gi|332096258|gb|EGJ01261.1| prophage CP4-57 integrase [Shigella dysenteriae 155-74]
          Length = 413

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 98/343 (28%), Gaps = 32/343 (9%)

Query: 15  RTRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTGST-----PKR 58
               G  ++   Y+R    +RI L +                 Y + ++  T      ++
Sbjct: 35  VKPSGSKLWRFSYYRPSDKKRILLSFGSLEDVSLADARKRRSEYRTLISAGTDPQDHERQ 94

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTK 117
           +     R++  T + + + + +     +LA N+           +    G+     +T +
Sbjct: 95  KRETEARRQGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTAR 154

Query: 118 HIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                +   K   +  +  + L  +  +  +A     +  NP ++V +           T
Sbjct: 155 RFVEVLTPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPT 214

Query: 176 KEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-T 229
                     Q  S  +   Q RL  E+ L +  R +++       +  +          
Sbjct: 215 IRPEQLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGR 274

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286
             +    +     + +A+    K      N                 A  A         
Sbjct: 275 MKMRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV 334

Query: 287 ---HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
              HG+R   +T + + G     + A       ++    Y + 
Sbjct: 335 LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
 gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136]
          Length = 267

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 2   VTKFKNYLAKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     +     + E    
Sbjct: 57  VNLRLQGINKFLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKARLKADGYEE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H++     + ++           +      K L    
Sbjct: 114 YFIVWFMAATGARVSELLHIKAEHIKVGYLDLYSKGGKIRRLYIPKNLRTEAEKWLKSQG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 349

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/330 (10%), Positives = 83/330 (25%), Gaps = 57/330 (17%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHT- 129
              + +         +  +  ++      + R           +    +   ++ +    
Sbjct: 20  DAANAFLNHLGGRGFSAATVRAYAFDVANLSRFLVQQAVGLVAVDAPLVFDWIDWQGVRR 79

Query: 130 ---------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                           S+  + + ++R LF++ V       NP  S  R +   +  R  
Sbjct: 80  TDQPTSGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGL 139

Query: 175 TKE-------------------------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
                                       +            + R     +L  GLR +++
Sbjct: 140 LGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEA 199

Query: 210 CRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------ 262
               +  +      ++    G     V +   F   LA     +    +   +       
Sbjct: 200 RGLLLTDVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRG 259

Query: 263 -----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
                 ++       F+     +G  +   H +R    T  + AG     L A  G  + 
Sbjct: 260 PTTGAPVSEAGLRSLFRRHRETSGATRVRPHRLRHTYGTELSAAGIDLLTLRALMGHVSP 319

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSD 346
           +    Y       +L  +     +++  + 
Sbjct: 320 ETTARYVH-LSIEQLAAEYGAARATLAGAR 348


>gi|89152450|ref|YP_512286.1| putative integrase [Escherichia phage phiV10]
 gi|74055473|gb|AAZ95922.1| putative integrase [Escherichia phage phiV10]
          Length = 416

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQGFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + S  I S ++ + 
Sbjct: 375 YARQRAYMLQQWSDMIDSWINGEH 398


>gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334]
 gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334]
          Length = 212

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 263 KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++     +  K    +  ++++   H  R   AT+  D+      +    G  ++   +
Sbjct: 125 PLSEQSVRLILKRIVEQNSLSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQ 184

Query: 321 TYTKGA 326
            YT  +
Sbjct: 185 IYTHVS 190


>gi|254777686|ref|ZP_05219202.1| phage integrase family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 361

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 95/357 (26%), Gaps = 37/357 (10%)

Query: 25  FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKS-A 82
           +    GRR   P    +        +L  +   R+    P      +  L    Y K+  
Sbjct: 2   YHGPDGRRYTAPKTFLTEKDARGWLSLRQAEIIRKAWVPPEADEQPVPKLTFETYSKTWM 61

Query: 83  HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSM 140
               L   +R  +     D I+   G      IT   +R+       +TP+        +
Sbjct: 62  AQRDLKDRTRQHYAKLLGDHIVPTFGGLPIASITADDVRAWHAKLGANTPTLRAHCYGLL 121

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           R +   A+    + +NPC+ +          +       +          + R       
Sbjct: 122 RTIMGTALSDGKIKVNPCV-IRGAGSARRVHKIRPATLDEIATIAEEMPERYRAMVLLAA 180

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------------------IITVE 236
           +  LR  +      + +            G                            VE
Sbjct: 181 WCALRFGELTELRRRDIIIVDADDPDDTYGVVRVERAVVRVEQGFQITTPKSDAGRRDVE 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG-VNKSAHGV 289
           +P   +  +            +                    F    + A   +   H +
Sbjct: 241 IPPHLLPAIRDHLDRFVEPDKDALLFPAVHGGHLAPASLYRQFYRARSVAKRDDLRWHDL 300

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDS 345
           R   A ++A  GAT  ELMA  G  T   A  Y   A  R R   +   ++ +V  S
Sbjct: 301 RHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDRQIARLLSKLVAVEPS 357


>gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
              +  +     +  +       +  ++        +     AG+  + + H +R   AT
Sbjct: 73  NWIWQYVFPSDRLSVDPRTGITRRHHVDPRAVQRALRDALRCAGIAKHATPHTLRHSFAT 132

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              DAG     +    G K V     YT   
Sbjct: 133 HLLDAGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|148548561|ref|YP_001268663.1| phage integrase family protein [Pseudomonas putida F1]
 gi|148512619|gb|ABQ79479.1| phage integrase family protein [Pseudomonas putida F1]
          Length = 393

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 96/363 (26%), Gaps = 34/363 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYP---HESTFIPAYMSALT--------GST 55
            +T      G   ++FR    G   RI L                 A            +
Sbjct: 25  GLTLYVAETGVKSWHFRFTWLGKQARISLGTYPEIGLKEARARRDEAREDVAQGKDPRES 84

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114
            + + +     K  T + +  E+ +    G L  ++     +  +  ++   G      I
Sbjct: 85  RREKKVERLGAKERTFRRVYEEWLEFRK-GGLTESTVKVISNAMELDVLPAFGLRQIDSI 143

Query: 115 TTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
               + + +   +   S  +A++    +  +F++AV    + INP   +     K    +
Sbjct: 144 KRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVAIGMIEINPTAEMHAVTEKMAPHK 203

Query: 173 PWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225
                   +             G Q + A + L+ +  R ++  +A    +  +      
Sbjct: 204 NRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTACRPAEVRKAEWSEIDLDTATWSI 263

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA----TKAG 281
                 +    +     + + +                             A     + G
Sbjct: 264 PASKMKMRRDHVVPLSRQAVELLRSMLPISGGLKYVFPNRTDAVRPIGINYAVNLLDRCG 323

Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRIRLGIKNS 336
               +S HG R   +T     G     +               Y      ++ R  ++  
Sbjct: 324 YTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADSSAIRDVYNHATYLEQRRDMMQAW 383

Query: 337 RRI 339
             +
Sbjct: 384 ADL 386


>gi|307129551|ref|YP_003881567.1| Integrase [Dickeya dadantii 3937]
 gi|306527080|gb|ADM97010.1| Integrase [Dickeya dadantii 3937]
          Length = 391

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 82/280 (29%), Gaps = 32/280 (11%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132
             + EY       +L+ ++ + ++     ++          +T   +++ +  +K T  +
Sbjct: 96  DYLDEYLAICKNRNLSPSTLVGYKK-CRSVLSALHKLPVTSLTPAILKNWISQQKTTLKT 154

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L+ +R     AV    + +NP   V   + +T      +    +      +E +  
Sbjct: 155 TRNRLSFLRSALDEAVTDGLIEVNPVKLVSAARYQTSRPLN-SGRHYEVDPFSPAEATAI 213

Query: 193 RLA---------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
            +A         F F  ++G+R S+ C    + +      +  +                
Sbjct: 214 YIAAGNKQWENLFRFAFHTGMRSSELCALRWEDIDFTGKRVNVKSARVVGVIKETKTKAG 273

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVNK 284
             +V+L    +  L                       +          +     KAG+  
Sbjct: 274 RRSVDLDKEALTALEEQKPFTLMRSKFVFDDPKTGAPWAGADAIRKKAWVPTLQKAGIRY 333

Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
              +  R   AT     GA    L A  G K  +     Y
Sbjct: 334 RNPYQTRHTFATRHISRGANLFWLAAQMGHKGPEMLFRHY 373


>gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle]
          Length = 373

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 47/379 (12%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGS----- 54
           M PS R   +        G+I   +      +R   P  +++        A         
Sbjct: 1   MAPSRR--SWGKLRTIGSGRIHASYVCPLDDKRYNAPTTYDNRMDAEAWLAKEKRLIENG 58

Query: 55  --TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
             TP  E +   +    T++    ++        LA  ++  +E++   +I    G+   
Sbjct: 59  EWTPPSERLRKAKVSAITVEEYTRKWLSE---RDLAPGTKNLYETHAAKRIYPALGETPV 115

Query: 112 RKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            ++T   +R+          +A +     +R +   AV  + ++ NPC      ++    
Sbjct: 116 AEMTPAVVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLLSENPC---RIEQKAAAE 172

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +  K         R+A   L ++ LR  +      + + ++  ++  +   
Sbjct: 173 RDVEALSVEELEKVAAEVHEHYRIAVYILAWTSLRFGELIELRRKDIMDDGETMHFRVRR 232

Query: 231 ------------------TIITVELPDGFMKLLAMTPIGKETFFI--------NNDKQKM 264
                             +   V +P    +++      +                KQ++
Sbjct: 233 GAARVGQKIVVGETKTVRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQRL 292

Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
               F+   K    K G  +   H +R   AT +A AGAT  ELM   G  T   A  Y 
Sbjct: 293 TKAAFTRSLKKGYAKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKY- 351

Query: 324 KGADRIRLGIKNSRRISSV 342
           + A   R  I+ ++R+S++
Sbjct: 352 QMASEAR-DIEIAKRMSAL 369


>gi|288958011|ref|YP_003448352.1| phage integrase [Azospirillum sp. B510]
 gi|288910319|dbj|BAI71808.1| phage integrase [Azospirillum sp. B510]
          Length = 418

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 104/369 (28%), Gaps = 44/369 (11%)

Query: 10  FVTKERTRHGKIIYY-----------FRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPK 57
            +       G + +               G   R  +         + A  +   G +P 
Sbjct: 24  GMYVRVDPSGTVSFRLDYRLNGRRETVYLGKYGRDGISLARARELCLDARRAVSEGRSPA 83

Query: 58  REYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            E   + R+  +  +      ++  +A    +A ++R    S F++ ++    +    +I
Sbjct: 84  IEKQRAKRRLKEAKSFGEFGEKWITNA---PMADSTRAMRRSIFERELLPVWRNRLLTEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+          P++AI     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TPDDLRAQCGKIVDRGAPATAIHVRDILKQIYGFAILDGEKVDNPADDVGPSSIATFTPK 200

Query: 173 PW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                      M +     +     RL  +  L + +R S+   A    +          
Sbjct: 201 DRALSPTEIRIMLKQLEHVATLPTIRLGMKLYLLTMVRKSELQDAVWDEVDFENAVWTIP 260

Query: 228 KTGTIITV-ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----------FSIWFKA 275
           K     +         + L +    K     +                      +     
Sbjct: 261 KERMKRSKAHNVYLCRQTLDIMIALKTCAGNSRYLLPSRYDADAPMSRATFNRITYAVVE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG---ADR 328
           +A K G+     + H +R+  +T+  + G     +      +    +   Y K      R
Sbjct: 321 QAKKEGLPLEPFTVHDLRRTGSTLLNELGFNRDWIEKCLAHEDGRSSRGVYNKAEYEVQR 380

Query: 329 IRLGIKNSR 337
             +  + + 
Sbjct: 381 RHMMQEWAD 389


>gi|9630419|ref|NP_046850.1| gp33 [Mycobacterium phage D29]
 gi|300669623|sp|Q38361|VINT_BPMD2 RecName: Full=Integrase
 gi|3172283|gb|AAC18476.1| integrase [Mycobacterium phage D29]
          Length = 356

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 44/357 (12%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYINSPRKKPTTLKWLIS 76
           Y     G+R   P  +++        A           TP  E          T++    
Sbjct: 5   YVSPIDGQRYFGPRNYDNRMDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEEYTK 64

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135
           ++        LA  ++  + ++   +I    GD    ++T   +R+          +A +
Sbjct: 65  KWIAE---RDLAGGTKDLYSTHARKRIYPVLGDTPVAEMTPALVRAWWAGMGKQYPTARR 121

Query: 136 F-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
                +R +   AV  + V+ NPC      ++             +            R+
Sbjct: 122 HAYNVLRAVMNTAVEDKLVSENPC---RIEQKAPAERDVEALTPEELDVVAGEVFEHYRV 178

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------------TQKTGTIITVE 236
           A   L ++ LR  +      + + ++  ++K                  T+   +   V 
Sbjct: 179 AVYILAWTSLRFGELIEIRRKDIVDDGETMKLRVRRGAARVGEKIVVGNTKTVRSKRPVT 238

Query: 237 LPDGFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAG-VNKSAH 287
           +P     ++      +                 Q+++ + F+   K    K G  +   H
Sbjct: 239 VPPHVAAMIREHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGYAKIGRPDLRIH 298

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344
            +R   AT++A AGAT  ELM   G  T   A  Y + A   R   + +RR+S +  
Sbjct: 299 DLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY-QMASAAR-DEEIARRMSELAG 353


>gi|77164139|ref|YP_342664.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|254435656|ref|ZP_05049163.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
 gi|76882453|gb|ABA57134.1| Phage integrase [Nitrosococcus oceani ATCC 19707]
 gi|207088767|gb|EDZ66039.1| site-specific recombinase, phage integrase family protein
           [Nitrosococcus oceani AFC27]
          Length = 399

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 102/331 (30%), Gaps = 35/331 (10%)

Query: 33  IRLPYPHESTFIPAYMSALTGST---------PKREYINSPRKKPTTLKWLISEYRKSAH 83
           I        T   A                   ++    +  K   T      ++ +   
Sbjct: 52  IGRYGTGGITLAEARERLSEAKKMITAGKSPAREKARDKARVKDAETFGAWAEKWMRGYQ 111

Query: 84  WGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140
              +A ++R   +S +++ + ++ G+    +IT + +R+  +S      P++A+     +
Sbjct: 112 ---MADSTRDMRKSVYNRELKKRFGNQKLSEITHEDLRAVTDSIVERGAPATAVHAREVV 168

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLA 195
             +F+WA+ +     NP   V          R           M ++        Q R A
Sbjct: 169 LQVFRWAIERGQKVENPAELVRPTSIARFEPRDRALSPAEIGLMYRYMDRVGTSPQYRAA 228

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
            + LL + +R S+   A    +  +       ++        L     + L +    K  
Sbjct: 229 IKLLLLTMVRKSELSNATWSEINFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTF 288

Query: 255 --------FFINNDKQKMNATQFSIWFK---AKATKAGVNKS---AHGVRKFSATISADA 300
                       +    M+A   +         A K G   S    H +R+ ++T+  ++
Sbjct: 289 AGGSEFVLPSRYDSDIPMSAATLNRVLALTYRAAQKDGKQLSKFGPHDLRRTASTLLHES 348

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
           G     +      +       Y K   R + 
Sbjct: 349 GYNTDWIEKCLAHEQKGVRAIYNKAEYREQR 379


>gi|168765086|ref|ZP_02790093.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217324776|ref|ZP_03440860.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
 gi|189365043|gb|EDU83459.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320997|gb|EEC29421.1| site-specific recombinase, phage integrase family [Escherichia coli
           O157:H7 str. TW14588]
          Length = 407

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 106/359 (29%), Gaps = 37/359 (10%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSAL-------TGSTPKREYINSPRKK- 67
             + +R G GR     R+RL    + +   A   A         G  P+ E  ++ +   
Sbjct: 45  WYFTYRAGTGRQISPERLRLGNYPDLSLKAAREKAAQCRAWLAEGKNPRYELNHAVQDAL 104

Query: 68  -PTTLKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG 122
            P T+K  ++ + +S          R  +E         II + G     K   +H  + 
Sbjct: 105 APVTVKEALTYWLESYAKEK-----RTDYESLKSRINKHIISQIGAMPLEKCELRHWLAC 159

Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKED 178
            +      P SA   L   +   K+  ++ Y   N    +       +     R  T ++
Sbjct: 160 FDQLAKRNPVSAGFLLQVCKQALKYCRKRRYAISNVLDDMVVGDVGKKAEISERVLTNKE 219

Query: 179 MQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + +      E             L+  G R ++  R+ VQ            K  +   V
Sbjct: 220 LGELLRALDEKIYPPYYSALIRLLIVFGCRTTELRRSEVQEWDFKEMLWTVPKEHSKTKV 279

Query: 236 ELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRK 291
            +     + +    +       +      +    +  S + +    +      + H +R 
Sbjct: 280 AIFRPIPEAILPFVMKLVEQNRHTGLLLGELKGQSSVSEYGRTAHRRINQAPWTLHDIRH 339

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK-NSRRISSVVDSDD 347
              T+  D G   H +      +       Y      D  R  +     R+  +  + +
Sbjct: 340 TFTTMLNDLGVEPHVVEQLTAHQLPGMQRVYNHSRYLDAKRDALNLWVERLDVLAGNHE 398


>gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
 gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134]
          Length = 299

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 76/280 (27%), Gaps = 36/280 (12%)

Query: 78  YRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--- 131
           + ++      A ++   +          + ++G  D   +    +       +  PS   
Sbjct: 19  WLRTL---GYAPDTCRKYPRQLREFLHFLEETGIVDLSSVDGAVVECFFTYLQSRPSIKT 75

Query: 132 ----SAIQFLT---SMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               S    L+   ++R   ++         A+          +  E       + +   
Sbjct: 76  GKSLSTTHLLSMQKTLRQFTRYLDALGLPGFALPRLRLQGLAAQSLEVFSQAEIDGLYAA 135

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDG 240
                 G + +         GLR ++  +  V  L        +K  K     +V +P  
Sbjct: 136 CGTDFYGLRDQALLALGYGCGLRRAEVSQLEVSDLHFKKGWLEVKAGKGAKARSVPMPTK 195

Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGV------NK 284
               L                           +++    SI F+    KA +        
Sbjct: 196 VAAYLYRYVYQARAQLPQSGTTPALLLSWRATRLSKQMVSIRFRELVIKAELLSSEDKRT 255

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           S H +R   AT    AG +   +    G  ++D    YT 
Sbjct: 256 SFHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTH 295


>gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 375

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 20/278 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRK---SGDFDYRKITTKHIRSGVE 124
           L  LI E ++      +  ++  ++    S     I +     D  + +++   I    +
Sbjct: 80  LDRLIRE-KEEHIGIDIKKDTLSNYHSTRSNLRTFIEEKYKVKDLAFSQLSENFIYDFRD 138

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
               +     SS     + ++ + + A R+         + +  +   +  +   +  + 
Sbjct: 139 YFLGTLGFQESSFYGAASQIKTVCRLAYREGLADTLLFANAKIARGDKKLPKALDRCSLD 198

Query: 181 QFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCR-AGVQHLQNNIFSIKTQKTGTIIT 234
           +  +        E    R  F F  ++G    D    + +Q ++++  S+  +       
Sbjct: 199 KLMNIQFGELEEEMETARDLFVFACHTGAAYCDLMELSRLQLVRDDEGSLWLKFNRQKTG 258

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292
           V      +          ++    +   +M    +  + KA   +A +    + H  R  
Sbjct: 259 VLCRIKLLPEAIRIIEKYKSDERESLLPQMKYATYQSYLKALRLRASIAFPFTTHTARHT 318

Query: 293 SATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            AT+   + G     +    G   V   E Y K   + 
Sbjct: 319 FATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQK 356


>gi|296393822|ref|YP_003658706.1| integrase family protein [Segniliparus rotundus DSM 44985]
 gi|296180969|gb|ADG97875.1| integrase family protein [Segniliparus rotundus DSM 44985]
          Length = 444

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/385 (11%), Positives = 101/385 (26%), Gaps = 70/385 (18%)

Query: 4   SLRLPPFVTKE---RTRHGKIIYYFR---------KGHGRRIRLPYPHESTFIPAYMSAL 51
             +LPP + K    +   GK    ++             RR             A+   L
Sbjct: 3   RQQLPPQIKKVELSQREGGKPAIRYQVTVDVGTDPITGKRRQARKRFATEQQARAF---L 59

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111
             +  +        +   T+K   +++  S    ++   +R  +E     +I + G  + 
Sbjct: 60  ANTQAEVSQGLYVHQNELTVKHACADWLSSR--HNIKPKTRSGYEQALMPVISQLGHLEV 117

Query: 112 RKITTKHIRSGVESRK-----------------HTPSSAIQFLTSMRVLFKWAVRQEYVA 154
           +K+  +HI + V + +                  +  S    L ++ ++ +    Q  ++
Sbjct: 118 QKLAKRHIDTLVSALREGKVKRGEEGGAKFHKPWSARSVNYMLLTIGMVLEDLKEQGVLS 177

Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214
            N    V R K++      +T  + QQ  +   +             SGLR ++      
Sbjct: 178 RNVASLVTRIKQQRTVFTTFTAAETQQVLASIEQDRLRHAWHL--ALSGLRRAEIAGLRW 235

Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGF-------------------------------MK 243
             +     ++  + T   +  +  +                                   
Sbjct: 236 DDVDLRAKTLTIKHTIVSVGGKAVEQDDGKTEKSGRTLPLTAPLLAELKAAKARQSTEKL 295

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAG 301
                  G +    +   +  +    +  +               H  R    T+    G
Sbjct: 296 AFGPAYQGGDHVVCDEAGRLYHPDTLTSKWAQAVKAVPDVPKIRLHDARHTCGTLMHLQG 355

Query: 302 ATAHELMATYGWKTVDQAET-YTKG 325
                + A  G          Y   
Sbjct: 356 VPIAVISAWLGHADASFTMRTYVHS 380


>gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319]
 gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319]
          Length = 417

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 72/285 (25%), Gaps = 27/285 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE 124
           L   I  +R        +            +  + +R      D   +K     I+   +
Sbjct: 115 LDEYIDRFRDRVGI-DRSERRLKCLLLFRRHLSEFVRYRYHVEDIPVQKADIAFIKDLED 173

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTK 176
                +    +++  +LT +  L K   ++  +     +           +       ++
Sbjct: 174 YFAKEKGFKLNTSAGYLTMLASLLKDLHKRHIIDTYSFIGHSIRWDVGTPRYITREEVSR 233

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235
                           R  F F  Y+GL  +D      +H+ +        +       +
Sbjct: 234 IAALSDNELQGYEQVSRDMFLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNI 293

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNK--S 285
                  +  A+    K         +               +I  K  A    + K  +
Sbjct: 294 CYIPLLPEAFAIIERYKGIHTRAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCDIKKILT 353

Query: 286 AHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   A+      G +   +    G   +   + Y + +   
Sbjct: 354 FHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPER 398


>gi|239908241|ref|YP_002954982.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
 gi|239798107|dbj|BAH77096.1| phage integrase family protein [Desulfovibrio magneticus RS-1]
          Length = 360

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 95/337 (28%), Gaps = 18/337 (5%)

Query: 14  ERTRHG--KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREYINSPRKKP 68
           +RT+ G  K +   +    R+  +          A+   +    G  PK++   +     
Sbjct: 4   KRTQKGLTKWVAQVQVNGERKCSI--FTNKAEAIAWEVKMRSGNGLPPKKQSHETGTDSL 61

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSG--VES 125
            TL     EY         +        + F +  +         ++  K +     ++ 
Sbjct: 62  PTLVTWAEEYLDFCQ--KFSSKVVEEKIAVFRRFFQYVDPTMPVVELKPKMVLDYLRIQG 119

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + T ++A +   ++   + W ++           V+R   + +     ++ED  +  + 
Sbjct: 120 TQRTGNAANKERKNLVAAWNWGIKYLDFLEKNPCRVDRLPAQKKPRYIPSEEDFWKVYAV 179

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                +  L     L          R      +N    + T K                L
Sbjct: 180 AEGQDKVMLLAFLHLAGRKNEILRLRWTDVDFRNRRVCLWTSKRAGGDKEYDWLPMTDEL 239

Query: 246 AMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGVNK-SAHGVRKFSATISAD 299
             T                  T         W K     AGV K   H +R  SA+I   
Sbjct: 240 FETLFKHRQEVAGEWVFPNPVTGVPFVSRQHWMKELCGLAGVKKFDRHSIRHLSASILDA 299

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           AG     + A    K+      Y      +R+ + + 
Sbjct: 300 AGVELTLIQAILRHKSATTTARYLHQLRGVRIVLNDV 336


>gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 301

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 74/286 (25%), Gaps = 38/286 (13%)

Query: 77  EYRKSAHWGS-LAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS- 131
            +    ++ +  +  +   +     + +      G     + +   +R  V + +   + 
Sbjct: 13  RWISGPNFRNPYSKATIRIYGRNVHRFLEFLDFDGVERISEASIHLVRKFVMTGQSGGTA 72

Query: 132 ---SAIQFLTSMRVLFKW------------AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
              +      ++ + F +               +  +            + T  +RP  +
Sbjct: 73  PVNTQNVRTGALALFFDYLESTEEHGPFSGNPARALIEDQKHKKGGNVGKATARLRPVLE 132

Query: 177 EDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK 228
            D      +         G +      F+  +GLR S+ C                   K
Sbjct: 133 WDDMDRLQYEASKQETIAGIRDAALIGFIFDTGLRASEICALPHSAAEYYFQGRLRVIGK 192

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAG 281
                 V         L      +          F+ ++   ++     +  +    +AG
Sbjct: 193 GDKERLVRFTPEHADRLRAWIRTRARVVSKSDALFLTDEGNALSTQVLYMIVRRLLDRAG 252

Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           + K     H +R  +A+     G    ++    G   +     Y  
Sbjct: 253 IQKAQQGPHLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSKYLH 298


>gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810]
 gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810]
          Length = 392

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 71/251 (28%), Gaps = 19/251 (7%)

Query: 100 DQIIRKSGDFDY--RKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWA 147
             ++   G  D    ++    +        +          + ++   +   +R     A
Sbjct: 123 KHLLFYCGKHDLSFDELDKDWLDGFKYYLTNEAKTKSDTALSHNTQSSYFNKVRAAINEA 182

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            R+  +  NP   V   K KT      T +++             + AF F   +G+R  
Sbjct: 183 HREGIIRDNPLSQVTSIKAKTTKRVYLTLDEVNALAHTECRYPVLKRAFLFSCATGMRWC 242

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---- 263
           D  R     ++      +       ++         L                 ++    
Sbjct: 243 DIHRLTWSEVETFNNHKRIIFDQAKLSQGDAKSLQYLDIPKSAESLLGSPKASHERVFKG 302

Query: 264 -MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++  ++     A  AG+  + + H  R   A I    G   + +    G   +   E
Sbjct: 303 LKYSSYINVELLRWALAAGISKHVTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTE 362

Query: 321 TYTKGADRIRL 331
            Y    ++ R+
Sbjct: 363 IYADIIEQRRM 373


>gi|25011273|ref|NP_735668.1| hypothetical protein gbs1224 [Streptococcus agalactiae NEM316]
 gi|76799532|ref|ZP_00781664.1| integrase [Streptococcus agalactiae 18RS21]
 gi|23095697|emb|CAD46883.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585116|gb|EAO61742.1| integrase [Streptococcus agalactiae 18RS21]
          Length = 358

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 84/336 (25%), Gaps = 28/336 (8%)

Query: 15  RTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           R R     Y   ++   G+  +       T   A + A        +             
Sbjct: 5   RKRDNGWEYRISYKDITGKYRQKSKSGFKTKKQAELEANKIEIELSKGFQINNNI----- 59

Query: 73  WLISEYRKS---AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
              + ++         ++   +   +     +I           I   H +  +     +
Sbjct: 60  EFCTYFKNRSELYKKPNVTATTWDKYNYTLSKIKGYFDKAKLSSIKPSHYQKFISDYLNQ 119

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFK 183
           +   +     T +R   K A+ + Y+  +    V  PK             ++      +
Sbjct: 120 YNWQTIKMINTHIRQSIKMAIHEGYITKDFTAFVVLPKPDDSNVDSKFLELSEYQKLISE 179

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVEL 237
           +      +       +  +GLR S++       +       +   + K   +        
Sbjct: 180 TSNEVKYKSHFCIYLIATTGLRFSEAMGLTWSDIDRDELLLHVNKTYKVFGSDKGFQPTK 239

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGVNKSAHGVRKF 292
               ++ + +     +         K     F     +   K      G N   H +R  
Sbjct: 240 NKHSIRYVPINNTTIKLLDQYRLLFKTETRIFEGISNTAVNKTLKKLVGRNIHIHSLRHT 299

Query: 293 SATISADAGATAHELMATYGWKTVD-QAETYTKGAD 327
             +     G     +    G K ++    TY    +
Sbjct: 300 YVSHLISEGIDLFAISKIVGHKDLNITLSTYAHLLE 335


>gi|327413047|emb|CAX68076.1| putative phage integrase [Salmonella enterica subsp. VII]
          Length = 337

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 91/330 (27%), Gaps = 53/330 (16%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVE- 124
           +  T   L+ +Y  +     L   S  S+        R    D     IT + +    E 
Sbjct: 2   RKLTFDLLLEDYFFN---KLLRPASIWSYRKVTQTFTRFLDTDMSPEDITHRDVLLWREF 58

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--------- 172
               R  +  +    +T +R LF + +++  +        +   R  + ++         
Sbjct: 59  VLHERGLSSRTWNNKVTHLRALFTYGMKKGLLPQKENPFYDAVVRPDQKLKKVLTENQIE 118

Query: 173 -----------PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHLQNN 220
                         + +    +      ++  L    +L Y+G+R +   +  +  +  +
Sbjct: 119 QVYIVMARFAIMEHRGNAPHPRRCALLPTRFWLVVLDVLRYTGMRQNQLIQLRLGDISFD 178

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------------- 264
              I  +        E     + +L                +                  
Sbjct: 179 DDVITLRAESAKNHKENRVPIISVLKPGLQQLCAELRLRGMKPHDQFFNVGFLLGKVSAE 238

Query: 265 ----NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQA 319
               +      +F+  + + G N S H  R   AT       +    +    G  +++  
Sbjct: 239 YEEMSVQTLRAFFRRLSKECGFNVSPHRFRHTIATAMMKQPDSNLQTVKTLLGHSSINTT 298

Query: 320 ETYTKG-ADRIRLGIKNSRRISSVVDSDDP 348
             Y  G  D +R  ++   R       + P
Sbjct: 299 LEYVDGNVDTVREALEA--RFVVRRKKNHP 326


>gi|327252692|gb|EGE64346.1| phage integrase family protein [Escherichia coli STEC_7v]
          Length = 426

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 112/411 (27%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAY--------MSALTGST 55
           ++ P  V       GK+  ++  KG   R  L  P  +               +  TG  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKASLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLREFGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|266625452|ref|ZP_06118387.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
 gi|288862643|gb|EFC94941.1| integrase/recombinase, phage integrase family [Clostridium
           hathewayi DSM 13479]
          Length = 282

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 74/277 (26%), Gaps = 19/277 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I  Y         A  +   +    +Q++      D  +I+   I         ++   +
Sbjct: 7   IKRYEDYLKNEEKADATIRKYLHEVEQLLAY---MDKAEISKAAILQYRRYLSSQYKAGT 63

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L+++    ++            +  +    +   +       +        +    
Sbjct: 64  VNGKLSAIHSYLEFMNLDMCKVKFLKVQKKAYIDEERELTEQDYRRLLDSAGRMGKSQLY 123

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTPI 250
            L       +G+R S+     V+ +      I  +    +I           + +    I
Sbjct: 124 YLMMVL-YSTGIRISELPYVTVEAVCQGKTEIYMKGKCRLIIFPKNLIKKLKEFIRNEKI 182

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                F     + ++ +      K    +A V+ S    H  R   A            L
Sbjct: 183 KSGCIFRTRSGRDLDRSNICHSLKRLCEEARVDPSKVFPHNFRHLFAKTFYSIEKNLAHL 242

Query: 308 MATYGWKTVDQAETYT--------KGADRIRLGIKNS 336
               G  +++    Y         K  +R+R+G+   
Sbjct: 243 ADILGHSSIETTRIYVAASTRQYEKVMNRMRIGLDKI 279


>gi|2618945|gb|AAC48878.1| integrase [Phage 21]
          Length = 356

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 95/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F+         +      L +G R  D C      + +++  I  +KTG+        
Sbjct: 179 AIFEIVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPLNL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10]
          Length = 190

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 13/191 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K+TP++    L  ++    W   +  + I      E    +   +    + D  +     
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            + S  R  F+ L  +G+R S+     V  +            K      + +    ++ 
Sbjct: 69  CDNSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINISKELVEE 128

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L  +   ++         K +        K  A KAG+ K  + H  R   A    + G 
Sbjct: 129 LMNSGFFEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGV 179

Query: 303 TAHELMATYGW 313
             +++ A  G 
Sbjct: 180 PLNKIQALLGH 190


>gi|325978235|ref|YP_004287951.1| ICEBs1 integrase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|325178163|emb|CBZ48207.1| ICEBs1 integrase [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 410

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 104/366 (28%), Gaps = 49/366 (13%)

Query: 7   LPPFVTKERTRHGKIIYYF------------RKGHGRRIRLPYPHESTFIPAYMSALTGS 54
           +P    K+  +  K  +Y+            R     R         +   AY  A+   
Sbjct: 1   MPKTSYKDVYQDNKGQFYYEVSLGTDKITGKRIKRKGRKSQSGKKFESAKEAYTEAIRVK 60

Query: 55  TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114
               +          T +  ++      +   +  ++  S       ++ + G    RKI
Sbjct: 61  NDFLQTQGYSDYG-MTFEQFMNNVYIPHYKTEVTEDTFESRNPTLKILLARFGKKPLRKI 119

Query: 115 TTKHIRSGVESRKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           T   ++                S A      ++ + ++AV   Y+  N    V+   +  
Sbjct: 120 TLHDVQFFRTWLLDKNGGAYAQSYASMVFGMLKKILEFAVNLNYLDKNIAQQVKPIPKGK 179

Query: 169 EGIRPWTKEDMQQFKSFWS-EGSQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             +  WTK++ ++  S    E     L F        +G+R ++        +  +   +
Sbjct: 180 TDVAYWTKDEFEKVLSKIYVEDFYEHLCFVLLWVYYMTGIRVNEGTALWWNDVDFDKKQL 239

Query: 225 KTQKT------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ---- 262
           +                           + L D  +++L +    +  +   +       
Sbjct: 240 RVHHMLITKSRKNYKRKNHTKTADGKRVLTLDDDTLEVLRVWKERQAQYGDMDFIFSYDG 299

Query: 263 -KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA-DAGATAHELMATYGWKTVD-Q 318
             M  +         A  AGV    A G+R    +    +  A+   +    G  + +  
Sbjct: 300 LPMIKSTIGRIIARYAKLAGVPVIQAKGLRHSHVSFLINEINASVLIVSKRLGHSSPEIT 359

Query: 319 AETYTK 324
            + Y  
Sbjct: 360 LKHYAH 365


>gi|256367608|ref|YP_003108167.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|331660225|ref|ZP_08361160.1| shufflon-specific DNA recombinase [Escherichia coli TA206]
 gi|228480863|gb|ACQ42189.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|321271555|gb|ADW79644.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli]
 gi|331052492|gb|EGI24528.1| shufflon-specific DNA recombinase [Escherichia coli TA206]
          Length = 384

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS 121
           SPR +  +L   + +Y K+        + +  + S    +        +  +ITT  I +
Sbjct: 3   SPRIRKMSLSRALDKYLKTVSVHK-KGHQQEFYRSNVIKRY--PIALRNMDEITTVDIAT 59

Query: 122 GVE----------SRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEG 170
             +           +  T ++    L  +  LF    V       NP   V +PK  +  
Sbjct: 60  YRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119

Query: 171 IRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            R  T  + ++  + F  +     + F   L + +R  +      +H+          +T
Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
               + ++P           +      ++ +     A+ F   ++    +  + +   H 
Sbjct: 180 KNGHSRDVPLSRRA---RNFLQMMPVNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHD 236

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R  + +   + G     E+ A  G ++++  + YT 
Sbjct: 237 LRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273


>gi|167920732|ref|ZP_02507823.1| phage-related integrase [Burkholderia pseudomallei BCC215]
          Length = 275

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 16/268 (5%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127
           T + +   Y         A  ++ +     D++ +           I   HIR  ++ RK
Sbjct: 3   TFRHVAERYLIEVLPTKAAE-TQRTNLLQLDKLYQFFDCPPAPLDDIKPIHIRKYLDWRK 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
            +P SA + +     +F  A                 ++  E  R     D      +  
Sbjct: 62  QSPVSANREIALFSHIFNKAREWGATDRPN--PCSGVRKHREKGRDVYVGDGLYKAVWEK 119

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
             +  R A +    +G R +D  +   + +++   SI+  KTGT + +E+      LL  
Sbjct: 120 ADAPLREAMDLAYLTGQRPADVLKLDERDIRDGSVSIRQNKTGTRLRIEIVGELAALLER 179

Query: 248 TPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATIS 297
               K      + +       + +        F      AG+ K+      +R  + T  
Sbjct: 180 LARRKIEHNPRSTRLIVDELGRPLGRAALRFRFDRARDAAGIPKADFQFRDLRAKAGTD- 238

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325
            +  +      +  G  +V   E Y + 
Sbjct: 239 KEHASDLRGAQSLLGHGSVAMTEHYVRK 266


>gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 354

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 97/341 (28%), Gaps = 73/341 (21%)

Query: 68  PTTLKWLISEYRKSAHWG----SLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSG 122
             T++    EY +          L+  +  S+     +     G D D   I    +   
Sbjct: 9   DITVRDATLEYLEILERRVMRSQLSAATLTSYRRDLLEFTTLLGPDTDLDSIEADDLEIA 68

Query: 123 VESRKHTP----------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
           + +   +P                       S  ++ T++R LF+WAV + YV ++P + 
Sbjct: 69  LTTLAKSPDRRYRVGVKIAEDGSTPPGRGPYSLARWFTAVRGLFRWAVDKGYVQVDPTVK 128

Query: 161 VERPKRKTE---------------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
           V  P+  T                           Q ++      +       L+ SG R
Sbjct: 129 VTPPRVPTRVGGTRVGLRLDEALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPR 188

Query: 206 CSDSCRAGVQHLQNNIFS-----IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
            S+ C A    ++ +  +         K      + L    ++++      +        
Sbjct: 189 VSELCGANRSDIRVHEETGTPVLHVRGKGRKDRDLPLSKPTVEVIERYLAEERPAPPTPQ 248

Query: 261 K-----------------------QKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATI 296
           +                        +++        +  A +  G   + H +R  + T+
Sbjct: 249 RPHDMVERRRIDDAAGALFVSVRGWRLSPRDVQRMVQRYAKEFLGRRATPHSLRHTALTV 308

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337
            A AG     +    G  ++     Y    D +   ++   
Sbjct: 309 LARAGVDIATVAQIAGHASLSTTSVYMD--DSMSAAVEAIA 347


>gi|150005630|ref|YP_001300374.1| integrase [Bacteroides vulgatus ATCC 8482]
 gi|149934054|gb|ABR40752.1| integrase [Bacteroides vulgatus ATCC 8482]
          Length = 404

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 92/301 (30%), Gaps = 41/301 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           K LI +Y +    G+     R+ ++   +          D  + +I    +    +  + 
Sbjct: 111 KELIEQYTREDKCGN-----RLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYEKWLRS 165

Query: 129 TP---SSAIQFLTSMRVLFK------------WAVRQEYVAINPCLSVERPKRKTEGIRP 173
                ++      ++R  +             +      +      + +R   KT+ ++ 
Sbjct: 166 KGNRETTISLLFRTLRSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKF 225

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T+      + +        +     L  G+  +D      +++QN       QKT   I
Sbjct: 226 TTEVQPIGKQQYMELSKDIFVFS--YLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPI 283

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKATKA 280
            + +P   M+++       + +       K++ T                   K  A + 
Sbjct: 284 KIGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQKQNRIHKILGKVNKNLKLLAAQL 343

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           GV    + +  R   A++   +G     +    G   +   + Y    D  ++  +  R 
Sbjct: 344 GVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQV-DEAMRN 402

Query: 339 I 339
           +
Sbjct: 403 L 403


>gi|325677591|ref|ZP_08157250.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324110713|gb|EGC04870.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 364

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 110/355 (30%), Gaps = 39/355 (10%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           G+    F     ++ R  Y    T     +  L     + E +    +    +  ++  +
Sbjct: 19  GRWEGRFYCKGTKKYRSVYGRSYTETKEKLDKL-----RSEVLVPSVRCVLLVIDILKMW 73

Query: 79  RKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134
            ++    S+  +S   +       +I       Y ++    I   +  +     +P    
Sbjct: 74  LEARRP-SIKESSYAGYRHKLEKHLIPYFDKMKYDRLDLSGISKFITDKLTEGLSPKYIS 132

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPR 193
             +  ++   +WA    +   N   + + PK+KT+    ++  + ++  S    E S   
Sbjct: 133 DMVIMVKSAARWA-EITHNYANQVKNAKLPKKKTKEASFFSPAEQKKIISTVRAEHSNTG 191

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------------- 232
                 L++G+R  ++C      +  +   +   KT                        
Sbjct: 192 CGVMLTLFTGMRIGEACALKWADIDFDEKMLHVTKTVQRIATFGSESKSAVKVTAPKSES 251

Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289
               + LPD  + +L         + ++  ++ +    FS  +KA   KA V     H +
Sbjct: 252 SVRDIPLPDFLVDMLREYRGKDTDYILSGTEKVVEPRCFSNRYKALLKKADVPSRKYHSL 311

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVV 343
           R   A  +         L    G    +     Y   +   +       R+ ++V
Sbjct: 312 RHTFAVNALHQDFDIKTLSELLGHSNANITMSVYLHTSMDRKSAC--MDRLQALV 364


>gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
 gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31]
          Length = 328

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  +    +        DF   ++              +I    E RK   +
Sbjct: 32  KSEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKT 91

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190
           S    L++++ L+K             + + +  R  E +   + +D+++    +   S 
Sbjct: 92  SVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDSE 151

Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243
              +       L Y+G+R  +      +H         F +   K+G  +   +    +K
Sbjct: 152 KKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLVK 211

Query: 244 LLAMTPIGKETFFI---------------NNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
            L          +                 ++   ++    ++  +        + S H 
Sbjct: 212 KLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIR 330
           +R   AT  +  GA   E+    G       E Y   +     +
Sbjct: 272 IRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRSVLEKK 315


>gi|261227474|ref|ZP_05941755.1| putative integrase from prophage [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|320188707|gb|EFW63367.1| Putative integrase [Escherichia coli O157:H7 str. EC1212]
 gi|323157131|gb|EFZ43254.1| phage integrase family protein [Escherichia coli EPECa14]
 gi|323159604|gb|EFZ45584.1| phage integrase family protein [Escherichia coli E128010]
 gi|326341722|gb|EGD65510.1| Putative integrase [Escherichia coli O157:H7 str. 1044]
          Length = 300

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 89/291 (30%), Gaps = 27/291 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       E   +      T+  L   +  S  +  LA  ++  +  +   ++   G   
Sbjct: 6   VAKVWQNYELEKAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVL 65

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              + T+ +R  ++ R   + + A   L S+  ++ W   + YV  NPC  V    + + 
Sbjct: 66  ADNVKTEQVRIFMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFSL 122

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R     D Q    +     Q R+A E       R  D      Q + +    I+  KT
Sbjct: 123 KARTVYITDEQYAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKT 182

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKA----G 281
           GT    E        + +                   K+ A   + W+      A    G
Sbjct: 183 GTKQIKEWSPRLRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVG 242

Query: 282 VN--KSAHGVRKFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
           V    + H +           G +       +     G KT +Q   Y + 
Sbjct: 243 VPFGCNFHDI--------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 285


>gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252]
 gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252]
          Length = 309

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 93/273 (34%), Gaps = 30/273 (10%)

Query: 85  GSLAVNSRISFESYFDQIIRKS---GDFDY---RKITTKHIRSGVESRKHTP---SSAIQ 135
              + N+R ++ +  ++        G        K+T  H+   +E  K +    ++  +
Sbjct: 25  RCRSENTRRAYRNDLEEFFGLFFEDGRLSLENVSKVTFAHVNLYIEHLKRSGCAENTLRR 84

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-------TKEDMQQFKSFWSE 188
            ++S+   FKWA   E V  +P + +     +    R          ++ ++  ++    
Sbjct: 85  KISSVSSFFKWAEAVELVDRSPVVRLLVQLPRASKERHIVTLSREEARQMLEAARAHPRT 144

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------TVELPDGF 241
           G +       LLY  LR S++     +H++        +   T                 
Sbjct: 145 GIRDEALVRVLLYCWLRRSEAAAMNFEHIRKIGAHYVLRLPRTKKGTEEIVKIPPHCMTS 204

Query: 242 MKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294
           ++ LA            +F  N+  ++++A          A + G+++    H +R    
Sbjct: 205 LERLAAFYGEARGPVWRSFSNNSRGRRLSAQSIYNIVARLAREIGLDRRIGAHTLRHTGI 264

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           T++   GA  H++        +     Y    D
Sbjct: 265 TLAVQGGAPLHKVRTQARHADIQTTMVYVHQQD 297


>gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
 gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus
           RM3267]
          Length = 354

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----- 245
           + +L  + ++++G+R S++     + +  +      +  G      +     +L+     
Sbjct: 191 RNKLIIKIIIFTGIRVSEALSLKRKDIAEDGELYVIRIRGKGNKYRVVMIKRRLIEAHLD 250

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                    +   FIN    ++     S   +    KAG+ K    AH +R   AT+   
Sbjct: 251 AIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYK 310

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +++++L  + +  +S 
Sbjct: 311 KQKDLVLVQEVLGHASLNTSRIYTHFDSEKLKLAAQVAEELSG 353


>gi|115352072|ref|YP_773911.1| phage integrase family protein [Burkholderia ambifaria AMMD]
 gi|115282060|gb|ABI87577.1| phage integrase family protein [Burkholderia ambifaria AMMD]
          Length = 418

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 114/370 (30%), Gaps = 43/370 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLPYPH-----------ESTFIPAYMSALTGSTPK 57
            +    +  G + + +    +GRR  L                   + A  +   G +P 
Sbjct: 24  GMYVTVSPTGTVTFRYDYRLNGRRETLTIGRYGPAGISLALAREKLLDAKKAVAEGRSPA 83

Query: 58  REYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            E     R+         + + +   A    +A ++R   +S  D+ I+    +    ++
Sbjct: 84  HEKQREKRRLTAAKNFGDMTARWLADAK---MADSTRAMRKSIVDRDILPAFKNRLLNEV 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           ++  +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 SSDDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGEKVDNPADGVGAASIATFVPK 200

Query: 173 PWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
                 M+    +    S       RLA   +L + +R S+   A    +     +    
Sbjct: 201 DRALSPMEIRLMYRQMESVATYPTIRLALRMILLTLVRKSELIEATWAEVDFENATWTIP 260

Query: 228 K-TGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           K         +     + + +                  +  +    K    + +     
Sbjct: 261 KSRMKGRNPHVVYLSRQAVDIFVALHTCAAGSKFVLPSRYDADRCMSKATLNRVTQIVSE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRI 329
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A+  
Sbjct: 321 RAKAAGLPLEPFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEDGRSSRSVYNKAEYAEPR 380

Query: 330 RLGIKNSRRI 339
           R  ++    +
Sbjct: 381 RHMLQEWANM 390


>gi|88704889|ref|ZP_01102601.1| phage integrase [Congregibacter litoralis KT71]
 gi|88700584|gb|EAQ97691.1| phage integrase [Congregibacter litoralis KT71]
          Length = 410

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 109/346 (31%), Gaps = 37/346 (10%)

Query: 7   LPPFVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59
           LP F  +  TR G   Y              RR++L    E T   A + A    T   E
Sbjct: 28  LPGFGVR-VTRGGTRTYIVMTRELANGHWRKRRVKLGRTSELTLADARVRARAILTAASE 86

Query: 60  YINSPRKKPTTLKWLI------------SEYRKSAHWGSLA---VNSRISFESYFDQ-II 103
             +     P T + L+              +  S           ++   +       ++
Sbjct: 87  GKHLDDVAPPTPRDLLVEQSKQTFAKERERFLSSYRGRGGRRPVESTLGEYRRCLQHNVL 146

Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
               D   ++IT   +++ +++       S A++  T +++LF W   +  ++I+P   V
Sbjct: 147 ESWTDVPVQEITHDDVKTALQTVMDDGHESRAVKIYTVLKLLFGWLCDENLISISPLSQV 206

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218
           +RP       R  ++E++    +   EG    +    +L +G R  +        +    
Sbjct: 207 KRPAHIGVRERVLSEEELILIWNHAGEGIYANIVRIMML-TGQRRQEVAGMCWSEINLDK 265

Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-ATQFSIWFKAK 276
                  +  K      V L    + +L      + +  +  D             +   
Sbjct: 266 RRWDIPGQRTKNHRPHVVPLSSAVISILHYHRSLQASTNMQTDLVFTTNGKAVFAGWSKS 325

Query: 277 ATK-----AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317
             +     A  +     +R+  AT + + G   H + +     +  
Sbjct: 326 KERLDRRVASADWQLRDLRRSFATHANELGYEPHVIESALNHVSGS 371


>gi|284008874|emb|CBA75687.1| phage integrase [Arsenophonus nasoniae]
          Length = 326

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 101/325 (31%), Gaps = 38/325 (11%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           K  YY +    + I L     S  +    S         + +        + K L S Y 
Sbjct: 9   KSSYYLKTKDNKTIILGSLSMS--MAELWSVYENKIHNIKKL-------LSFKELWSMYL 59

Query: 80  KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLT 138
            S H+  L++ S+         I++  G+     I  +HIR  ++ R   + + A   L+
Sbjct: 60  NSPHFSELSIRSQKDKHQGGKNILKVFGNIHVNNIKPEHIRKYMDIRGTQSKTQANHELS 119

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
            M V F W   + Y   NPCL +++   K        +E    + S        ++A E 
Sbjct: 120 YMSVTFSWGYERGYCKNNPCLGIKKFSLKNRDKYITDEEYNVTYDSASQI---VKIAMEI 176

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
                 R  D        +      I+  KTG     +      + +           I 
Sbjct: 177 SYLCASRIGDILELKHNQILEEGIYIRQGKTGVKQIKQWTPRLKETIDYAINLFPPQNIE 236

Query: 259 NDKQK------MNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGATA-- 304
           +   +         + F   ++   +KA       ++ + H +           G +   
Sbjct: 237 SYVIRNSNGTKFTKSGFDNHWREAKSKATKTLGRNLDFTFHDI--------KAKGISDFD 288

Query: 305 ---HELMATYGWKTVDQAETYTKGA 326
               +     G KT  Q + Y +  
Sbjct: 289 GSSKDKQLFSGHKTESQVQIYDRKV 313


>gi|25027372|ref|NP_737426.1| putative integrase [Corynebacterium efficiens YS-314]
 gi|259506489|ref|ZP_05749391.1| integrase [Corynebacterium efficiens YS-314]
 gi|23492653|dbj|BAC17626.1| putative integrase [Corynebacterium efficiens YS-314]
 gi|259165909|gb|EEW50463.1| integrase [Corynebacterium efficiens YS-314]
          Length = 421

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/385 (12%), Positives = 108/385 (28%), Gaps = 57/385 (14%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-----PAYMSALTGST 55
           M    R   F T ++   GK    +    G++ + P                   +    
Sbjct: 1   MARKKR--GFGTVDQLPSGKWRARYTGPDGQQHKGPQTWFDEGDALSWIRDEQKLIEFDE 58

Query: 56  PKREYINSPRKK--PTTLKWLISEYR--KSAHWGSLAVNSRISFESYFD-QIIRKSG--- 107
                    R++    T+   I E+   +S     LA ++   +    D ++++ +G   
Sbjct: 59  WSPPATRMTRREDLARTVGSWILEWLDLRSRGTNPLAQSTLDDYRRTLDARVLKVTGRAA 118

Query: 108 ---DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              D    K+T + + +  +       +P         +R   + AV ++ +  N     
Sbjct: 119 RLRDIPLLKVTRRDVATWWDDINRQFDSPPYNRNAYARLRTAIQAAVDRDIIPGNVVSVP 178

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL------YSGLRCSDSCRAGVQ 215
           +   R     +     ++ Q      + + PR+     L      + G+R  ++     +
Sbjct: 179 DAKSRPKPKRKQLPDGEIMQAIVDQLDHTVPRVDGRHKLIAILTFFHGMRIGEALGLRRE 238

Query: 216 HLQN--NIFSIKTQKTGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQ 262
           H+ +  +  SI+          +                + +             +    
Sbjct: 239 HIIDTGDTISIRVTGNAYRRPGKGMALKDTAKTDAGTRTVPVFPHFHNDLRYHLDHFTPP 298

Query: 263 KMNAT-------------QFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHE 306
              A               +         +AG   V  + H  R +  T  A+ G     
Sbjct: 299 HPTAQLFLSAHGQLILDTSYRSILHRAKIRAGMEDVEITPHYGRVWLITTLAELGMVPPA 358

Query: 307 LMATYGWKTVDQ-AETYTKGADRIR 330
           +    G   +    E Y +  +  R
Sbjct: 359 IGEILGQVDLKTITEIYMRSTEAKR 383


>gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 368

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 81/229 (35%), Gaps = 8/229 (3%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +  K IR        + +SA  + ++ R L K A +++ +  N    +++ + K    + 
Sbjct: 144 LNCKQIRHPN--ISVSRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQY 201

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T  ++++  +   +    + A  F   +GLR SD  +    +++    +    +  T  
Sbjct: 202 LTLAEVKKLAATPCKIPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTE- 260

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291
                +  + +                 + +     +   K   ++AG+ K  + H  R 
Sbjct: 261 -KTETEATLPISNEALELCGIPDSGRVFKGLTRAMTNQPLKQWISEAGIKKHITFHCFRH 319

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
             A I    G   + +      K V   + Y    +  +   + + +IS
Sbjct: 320 SYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR--ETANKIS 366


>gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17]
 gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +  +S  ++ S   ++           D  + ++T   I     
Sbjct: 114 LDMLIRE-KESHIGIDIKRDSMSAYHSTRKRLQEFIQRKYHVSDLAFSQLTENFIYELQA 172

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  S+  +    ++ + + A R+          V   +   +  +   KE + 
Sbjct: 173 FCLSELGHQQSTFFRVAADLKTVCRLAYREGLADTLLFDKVHIERGDKKAPKALDKEALD 232

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                +F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKALRFDELEKEMETARDVFLFACYTGAAYCDLMELSKKHLVRDDAGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     +  + +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRIKLLPEAVRLIEKMHSDERETLLPFIKYSTYQSCLKALRLRAGIAFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNLSMTERYAKVTPQK 390


>gi|218711152|ref|YP_002418772.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a]
 gi|218349935|emb|CAQ87344.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a]
          Length = 397

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 101/295 (34%), Gaps = 22/295 (7%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV 123
           + +  +L   + +Y K+        + +  +    + I R    D    +ITT  I    
Sbjct: 29  KTRKMSLSRALDKYLKTVSVHK-KGHLQEFYR--VNVIKRHPMADRYMDEITTIDIAGYR 85

Query: 124 ESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIR 172
           + R          + T ++    L  +  LF    V      +NP   V +PK      R
Sbjct: 86  DQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRDR 145

Query: 173 PWTK-EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
             T  E+ +  + F  +  Q  + F   L + +R  +      +HL          +T  
Sbjct: 146 RLTSGEERRISRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKN 205

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290
            +  ++P           +      IN +     ++ F   ++       +     H +R
Sbjct: 206 GLPRDVPLSRKA---RNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLR 262

Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
             + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 263 HEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRKQTSKI 317


>gi|320175069|gb|EFW50182.1| Integrase [Shigella dysenteriae CDC 74-1112]
          Length = 416

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 115/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGSTPKR 58
            +     +       G + + +    +GRR  L          +   A    +      +
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 59  EYINSPRKKPT---------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
              +    K           T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPATAKRDGIKKIRGADTFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S ++ + 
Sbjct: 375 YARQRAYMLQQWADMIDSWINGEH 398


>gi|153009174|ref|YP_001370389.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561062|gb|ABS14560.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 426

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 107/368 (29%), Gaps = 51/368 (13%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTP----- 56
           L  F  K   ++ K+     +  G     ++  +    E T   A   A    T      
Sbjct: 29  LKGFGVKVTPKNRKVFLVMHRPKGHTGAAKKYTIGTYGEWTVQQARDRAREVLTEGSKGN 88

Query: 57  ---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112
                E +   RK    L  L+ E+ K     +    +    +   ++ ++ K G     
Sbjct: 89  DVGAIERVERQRKSSDILTDLVDEFLKKHAAQN---KTHDETKRILERELLSKHGKKSIH 145

Query: 113 KITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
            +T   I S +E  +    P  A + L ++R    W V ++ +AI+P   +  P R+   
Sbjct: 146 VVTKHDILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVSRDIIAISPANGISLPTREVSR 205

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIK 225
            R  T ++ +           P      LL+   +  D          N          +
Sbjct: 206 DRVLTADETRAALMAAKSVGYPYGNIVELLFLTAQRRDEVGDMRWSELNLDKATWTIPAE 265

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----------------TQF 269
             K G    V L    + LL   P       + +D                       + 
Sbjct: 266 RVKNGKAHDVHLSKDALALLHSIPRFVSADNVESDLVFTTTGNTPFSGYSKSKTTLDKKM 325

Query: 270 SIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQ 318
               +  A   GV            H +R+   T  +  G   H   A    K+      
Sbjct: 326 LEVLQKMAEDKGVNPELVKLTPWRLHDIRRTVTTELSKLGVAIHVADAILNHKSGVISGV 385

Query: 319 AETYTKGA 326
           A  Y K A
Sbjct: 386 AAVYQKNA 393


>gi|320539088|ref|ZP_08038759.1| putative phage integrase [Serratia symbiotica str. Tucson]
 gi|320030726|gb|EFW12734.1| putative phage integrase [Serratia symbiotica str. Tucson]
          Length = 356

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 112/339 (33%), Gaps = 24/339 (7%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREY 60
              LPP +     R+     Y    +G+   +    +     A     +     +  R  
Sbjct: 9   RRDLPPNLY---VRNNGYYCYRSPRNGKEFGMGTNKKEAVNQAIEPNITLFESYSQSRLI 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    ++   +  Y +      L   +   +    + +       + ++ITTK I 
Sbjct: 66  NRLIGNNANSMLTWLDRYHEIISKRGLREKTLGDYSGRINLLKEYFVGTNLQEITTKDIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
             + S   +   +SA    +++  +F+ A+ +  + +N   +   P+ + +  R   +  
Sbjct: 126 KLLNSYTDQGKAASAKLMRSTLLDIFREAIAEGMIQLNLVEATRNPRVEVKRERLSLENF 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----- 233
           +   ++  +  S   L+ +  L +G R  D  +     ++++   ++ QKTG  +     
Sbjct: 186 LLIRQAATTLPSWIGLSMDIALLTGQRLGDIRKMKWSDIKDDKLYVEQQKTGVKLSIPLS 245

Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVN 283
                     +  +++      G ET   +  ++ +     S WF           +G  
Sbjct: 246 IGLPAVDMTLNSVIEICQKIHAGSETILASRKQEMLGEKTISKWFAKSRELTLLSWSGSP 305

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            S H +R  SA        +        G K+    E Y
Sbjct: 306 PSFHEIRSLSA-RLYTDTISGEFAQKLLGHKSAAMTEKY 343


>gi|262040209|ref|ZP_06013461.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042446|gb|EEW43465.1| phage integrase family site-specific recombinase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 413

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 104/350 (29%), Gaps = 36/350 (10%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKR 58
            +       G  I+   Y+R    +R          +           + + +      +
Sbjct: 30  GLYLLVKPSGSKIWRFSYYRPHDKKRALVSFGSINEVTLAEARKKRDEFRALIAQGIDPQ 89

Query: 59  EYINSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYR 112
            +    R+        T + + +++ +     +LA N+           ++   G+    
Sbjct: 90  AHQQQKREAEELRRGNTFQKVAADWYEMKKGQNLAANTIKDIWRSLEKYVLPDIGNTPIN 149

Query: 113 KITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           ++T +   + +E  K   +  +  + L  +  +  +A     + IN   +V +       
Sbjct: 150 ELTARKFVTVLEPIKARGNLETLKRVLQRINEVMDFAANSGLIEINTAANVRKAFPTPVK 209

Query: 171 IRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
               T          Q  S      Q RL  E+ L +  R +++  A  + +     +  
Sbjct: 210 KHMPTIRPEQLPDLMQTLSIARIERQTRLLIEWQLLTVTRPAEAAEAKWEEINLTDNTWT 269

Query: 226 TQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--------KMNATQFSIWFKAK 276
                  +    +     + LA+    +                   M++   +   +  
Sbjct: 270 IPAGRMKMRRDHVIPLSNQALAVLDAMRPISAHREYVFPSFKTPTLPMSSQSANAALRRM 329

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
             + GV  S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 330 GYQ-GVLVS-HGLRAIFSTAANEEGFEPDVIEAALAHIDTNEVRRAYNRS 377


>gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
 gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4]
          Length = 307

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 37/298 (12%)

Query: 68  PTTLKWLISEYRKSAHW-GSLAVNSRISFESYF------------DQIIRKSGDFDYRKI 114
           P + + +++ Y +       L+ ++  ++                D+  R+  D D  ++
Sbjct: 2   PESAESVVAGYERHLSLERGLSPHTVRAYVGDVVSLLAFQTVGAEDRPARRFEDLDVTQL 61

Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
                    +    T  +             WA R   +  +P   +  P+         
Sbjct: 62  RAWLAGQRSDGAGRTTLARRAAAAR--TFTAWAHRTGLLKSDPGGRLAAPRTHRTLPGVL 119

Query: 175 TKEDMQQFKSFWSEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IK 225
             E         ++G         + R   E L  +G+R S+ C   V  +  +      
Sbjct: 120 RAEQADALMDASAKGAAERDPVALRDRALVELLYATGIRVSELCGLDVASVDFSRRVLSV 179

Query: 226 TQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKA 275
             K     TV       + L                 +  F+    ++++          
Sbjct: 180 VGKGDKERTVPFGVPAAEALTAWLEDGRPALAGETPPKALFLGVRGKRLDPRAARRVVHE 239

Query: 276 KATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR 330
                    +   HG+R  +AT   + GA    +    G  T+   + YT    DR++
Sbjct: 240 AVAAVPGAADMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLK 297


>gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574]
 gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE 124
           L  LI E +KS     +   +   +     +  + I+   K  D  + ++T + I    +
Sbjct: 114 LDMLIKE-KKSHVGIDIKEGAIHGYHSTRIHLQRFIQRKYKVSDLAFSQLTEQFIYDFRQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +     T ++ + + A R+           +  K   +  +   +E + 
Sbjct: 173 YFVGECGFQECTFYNAATFLKTVCRLAYREGLADTLLFDKAKISKGDNKLPKALDREALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K    E         R  F F  Y G    D       HL  +       K       
Sbjct: 233 KLKVLRFEDLEEEMETARDIFLFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E F  +  +     +    +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKNYQSCLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQK 390


>gi|207723385|ref|YP_002253784.1| integrase protein [Ralstonia solanacearum MolK2]
 gi|206588584|emb|CAQ35547.1| integrase protein [Ralstonia solanacearum MolK2]
          Length = 394

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 114/369 (30%), Gaps = 43/369 (11%)

Query: 11  VTKERTRHGKIIYYFRKG-HGRRIRLP-----------YPHESTFIPAYMSALTGSTPKR 58
           +    +  G + + F    +GRR  L                   + A  +   G +P  
Sbjct: 1   MYVTVSPTGTVTFRFDYRLNGRRETLTIGRYGPAGISLGMAREKLLDAKKAVAQGKSPAH 60

Query: 59  EYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
           E     R+         + +++   A    +A ++R   +S  D+ I+    +    +IT
Sbjct: 61  EKQREKRRLTAAKNFGDMTAQWLAGAR---MADSTRAMRKSIVDRDILPAFQNRLLNEIT 117

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR- 172
              +R+     K    P++A+     ++ ++ +A+       NP   V      T   + 
Sbjct: 118 ADDLRALCGKVKGRGAPATAVHVRDIVKQVYAFAILHGEKVDNPAADVGAASIATFVPKD 177

Query: 173 ----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQ 227
               P     M +     +     RLA   +L + +R S+   A    +          +
Sbjct: 178 RALSPLEIRLMSRQMESVATYPTIRLALRMVLLTLVRKSELIEATWDEVDFENATWTIPK 237

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKAK 276
           +        +     + L +                  +  +         + +     +
Sbjct: 238 QRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYDSDRCMSHATLNRVTQIVAQR 297

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG--ADRIR 330
           A  AG+     + H +R+  +T+  + G     +      +    +   Y K   A++ R
Sbjct: 298 AKAAGLPLEPFTVHDLRRTGSTLLNEIGFNRDWIEKCLAHEEGRSSRSIYNKAEYAEQRR 357

Query: 331 LGIKNSRRI 339
             ++    +
Sbjct: 358 HMLQEWASM 366


>gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium]
          Length = 166

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
               +   N T      K     +G+NK  S H +R   AT   + G     +    G K
Sbjct: 95  QRQRRHHANETWLQQEVKRAVRASGINKLASCHTLRHSFATHLLENGYDIRTVQELLGHK 154

Query: 315 TVDQAETYTKGA 326
            V     YT   
Sbjct: 155 DVSTTMIYTHVL 166


>gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            G+  +        +       +  ++        K     A +  + S H +R   AT 
Sbjct: 74  WGWQYVFPAANRSIDPRSQKERRHHLSDQAVQKAMKKAMRTAKIFKHGSCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVRTTMIYTHVL 163


>gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.]
          Length = 165

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 2/105 (1%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288
                    G+  +     +  +       +  ++    +   K     +G+ K  S+H 
Sbjct: 51  KYRNANKEWGWQYIFPSKTLSVDPRSGIKRRHHIHLDSLNKAIKRAVQISGITKNVSSHA 110

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
            R   AT   + G     +    G K V     YT   ++    +
Sbjct: 111 FRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNKGGRAV 155


>gi|206558485|ref|YP_002229245.1| prophage integrase [Burkholderia cenocepacia J2315]
 gi|198034522|emb|CAR50387.1| prophage integrase [Burkholderia cenocepacia J2315]
          Length = 358

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 84/334 (25%), Gaps = 27/334 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +R       Y      G               A                   +   +   
Sbjct: 5   KRKTSPNWQYKLYPPGGGTPVQGSTGTRDKAQAQEFHDRLKVDLWNQARLGTQPRHSWND 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
            +  Y        LA  S  + + +   + R         I    I +   +++  P + 
Sbjct: 65  AVVRYVGERA--GLA--SLETSKIHLRWLDRHLSGVALADIDRSRIDAIALAKRREPRTV 120

Query: 134 I------------------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                              + +  ++ +   AV  E++A  P     +   K        
Sbjct: 121 RTRHGVVATDRPVSDATVRRVIGVLKAVLNAAVEWEWLARAPVTKRAKVVSKRIRWLTPA 180

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           + +    +         R + E  L     +GL+ S    A      +   +   +    
Sbjct: 181 EAERLLAELPAHLADMARFSLETGLRRANVTGLQWSQVDLARRVAWIHPDQAKARKAITV 240

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290
            ++        +  A          +   + K      +  +     +AG+ +   H +R
Sbjct: 241 PLSDTAIAVLQRQRANPRAPACADSVFVYRGKPVYQTATAAWAKALRRAGLHDFRWHDLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A+     G     L    GW+T++  + Y  
Sbjct: 301 HTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334


>gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus]
          Length = 361

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/321 (8%), Positives = 71/321 (22%), Gaps = 65/321 (20%)

Query: 73  WLIS---EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRK 127
            LI    ++ K       + N+  ++  +   +             I  + +   V   +
Sbjct: 24  QLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLR 83

Query: 128 H----------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           +                  ++    L  +     +  R             + +     +
Sbjct: 84  YPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFL 143

Query: 172 RPWTKEDMQQ---------------------FKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
               K   Q+                              + +L    +   GLR  +  
Sbjct: 144 HHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVL 203

Query: 211 RAGVQHLQNNIFS--------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN---- 258
              ++ +                 +    +          +L+++        +      
Sbjct: 204 SLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEH 263

Query: 259 ----------NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308
                        + +         +    + G+  ++H +R   AT     G     + 
Sbjct: 264 DYVFISLKEGYFGKPLKYQSVLGLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQ 323

Query: 309 ATYGWKTVDQA-ETYTKGADR 328
              G   V     TY   +D+
Sbjct: 324 KRLGHAHVQTTLNTYVHLSDQ 344


>gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
 gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222]
          Length = 160

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           GLR  +     V  +  Q     I+  K G    V LP   +K L    +  +   +   
Sbjct: 2   GLRLGEGLNLTVHDIDSQTMRVHIREGKGGKDRMVPLPLRTLKALRTHWLSHKHPRLLFP 61

Query: 261 ------KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312
                    M+        K    +  + K  S H +R   AT   + G     L    G
Sbjct: 62  GLGKGDDAPMDRGGIQKTMKLVLKECDIQKHASPHSLRHCFATHLLEQGLDLRSLQTLLG 121

Query: 313 WKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344
             +++    YT+    + R        ++  +D
Sbjct: 122 HASLNTTARYTRMTQIKQRDAAMAINHLTDALD 154


>gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3]
          Length = 77

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            A +AG+     S H +R   A+     GA    +    G   +   + YT   +  
Sbjct: 2   LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER 58


>gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium]
 gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium]
 gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium]
 gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium]
 gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium]
 gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium]
 gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium]
 gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium]
          Length = 158

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|262166151|ref|ZP_06033888.1| putative pore-forming cytotoxin integrase [Vibrio mimicus VM223]
 gi|262025867|gb|EEY44535.1| putative pore-forming cytotoxin integrase [Vibrio mimicus VM223]
          Length = 366

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 88/296 (29%), Gaps = 42/296 (14%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
             +    +  +     +  +  +++   +   +++ +  G+ D R I    +R  +    
Sbjct: 9   TQSFSHYLDIFIADGEYRKVK-STKNGEQPRINRLRKIFGEEDLRSIKHSTLRMTIAGWH 67

Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                 +  + LT +R +F   +  + +  NP  +++    +     P+TK ++ +  + 
Sbjct: 68  SHLKNKTINEHLTILRFVFSTGLADQILDHNPMENIKNLLVEKTEPDPFTKIEIARLSNC 127

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF----------------------- 222
                Q + A    + +GLR S+        +                            
Sbjct: 128 NDVCPQVKNATALDILTGLRISELIALCWDDVDWKNKKLYVRRACVLDVYKCPKTTDSVR 187

Query: 223 --------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
                          +K        TV +     K L    +         ++   +A +
Sbjct: 188 DVDLNPLAISILKSQLKLMGKRRSKTVNVLQRDNKTLKQESLNFIFVNTKTNQPFTDAKE 247

Query: 269 FSIW-FKAKATKAGVNKSAHG-VRKFSATISADAGATAHELMATYGWKTVDQAETY 322
           F+   FK     AGV     G +R   A+    AG     L    G       + Y
Sbjct: 248 FTERFFKNYLIAAGVRHRGVGQLRHTFASQCLTAGINKEWLAHQMGHSDTKMIDRY 303


>gi|253570838|ref|ZP_04848246.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384171|ref|ZP_06993732.1| integrase [Bacteroides sp. 1_1_14]
 gi|251839787|gb|EES67870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263775|gb|EFI06638.1| integrase [Bacteroides sp. 1_1_14]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 82/272 (30%), Gaps = 22/272 (8%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHT--- 129
            K       A ++     + ++ ++      R+  D     +  K I         T   
Sbjct: 119 YKEKVGKEKAASTYRGLVADYNNLLLFLKEKRRIEDIAIADLDKKFIEDYYNWMLGTCAL 178

Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
             S+A   + +++ L   A  + ++ ++P +  +            T+ED+Q+       
Sbjct: 179 ASSTAFCRVNTLKWLMYTAQERGWIKLHPFIGFDCLPEYK-RRSFLTEEDLQRVIHVKLN 237

Query: 189 GSQPRL---AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             + R     F F+ ++GL  +D      +++  +           I T       +  +
Sbjct: 238 YKRQRAIRDMFLFMCFTGLAYADLKEITYKNIHTDSEGGTWLMGNRIKTGVSYVVKLLPI 297

Query: 246 AMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG--VNKSAHGVRKFSATIS 297
           A+  + +                           +    K G     + H  R   A ++
Sbjct: 298 AIELVERYKGENKKKSSPDKVFPVGEYQTMVSSLRVLTQKCGCSTEITPHIGRHTFAVLA 357

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              G     L    G K++   + Y +  +  
Sbjct: 358 ILKGMPLETLQKVLGHKSILSTQIYAELINPK 389


>gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM
           11551]
 gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM
           11551]
          Length = 311

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 41/293 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHT 129
           I  +++          +   + S   +      +      D  +   +     +    + 
Sbjct: 4   IDTFQQHVSVKQ-TEGTANRYASAIRRYRDWLDERGVEFGDANQDDVESHLLDLADEDYA 62

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYV-------AINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             S       +   +        V               ++ +   + +   T +++QQ 
Sbjct: 63  KGSLKIARAGIAKFYDEMYDYNPVEDVSIGSWTAVKKGSKKSQSLRDDVHYLTPDEVQQL 122

Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP 238
                   + R  L  + L  +G+R  + C+  +  +     SI+    KT +  TV   
Sbjct: 123 VDNVHSPPKLRNELIIKMLFQTGMRRGELCKVKLHDVNREERSIRIHADKTHSNRTVYYQ 182

Query: 239 DGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282
                 L +                  F     + +     S   +  A +AG+      
Sbjct: 183 PSLSTPLNIWIDAERNGVLTADDSPHLFPTQKAEHIKPNSVSRIVREAAEEAGIQEVMYH 242

Query: 283 --------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                     + H +R   A  +   G     L    G   ++  + Y   AD
Sbjct: 243 DKGGRPKRKITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLAD 295


>gi|254428215|ref|ZP_05041922.1| site-specific recombinase, phage integrase family protein
           [Alcanivorax sp. DG881]
 gi|196194384|gb|EDX89343.1| site-specific recombinase, phage integrase family protein
           [Alcanivorax sp. DG881]
          Length = 405

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 120/380 (31%), Gaps = 46/380 (12%)

Query: 9   PFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKR 58
             +     + G   +  R    G    I L    + +   A  +A        TG+ P +
Sbjct: 24  GGLYFCVRKSGTPYWMLRYSAQGKRHEITLGQYPQMSLGDAREAAVLTKQGIRTGTDPIQ 83

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E     +    T+K L  ++ ++     L   +      Y  +I    G +    +T + 
Sbjct: 84  ERAKVVQPDIRTVKDLFQDWHETDLSRRLKHPNI-PKRIYQKEIHPVIGLYPIADVTPRD 142

Query: 119 IRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPKRKT 168
           IR+ ++   R + P+ A   L  M+ LF+  ++ +    NP           VE  + +T
Sbjct: 143 IRAVLQRVQRSNRPTIANDTLMYMKQLFRHGIKLDLCQNNPASPFTVSDAGGVEASRERT 202

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSI 224
             +           +   S G     A    L  G+R S+ C A  +           S 
Sbjct: 203 LTLEEIEHSFGVFREHISSFGRDNYRACCLFLVLGVRKSELCEARWEEFDLEAGIWDLSK 262

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAK-A 277
           +  KTG  IT+ LP   ++ L +              ++ +          +        
Sbjct: 263 ERSKTGASITIPLPTQAIEWLKVQQGHACGSPYVFPARRASKRPHMGPDTLNRAISKLFG 322

Query: 278 TKAGVN------------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324
            +AG               + H +R+   +++A  G  +H        K       Y + 
Sbjct: 323 REAGRKVQPPNKMDDLEHFTIHDLRRTFRSLAAAEGVPSHVAERCLNHKLKGVEGIYDRY 382

Query: 325 -GADRIRLGIKNSRRISSVV 343
              +  ++  +    +   +
Sbjct: 383 DYFEERKIAHQRVASLIETM 402


>gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574]
          Length = 290

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 71/252 (28%), Gaps = 27/252 (10%)

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
           ++I    +    E R    ++    L ++   F++   Q    +     +     K    
Sbjct: 23  KEIVVDFLDWIEEKRHCCAATRNVPLAALHSFFQYLQYQSPENLLEWQRILSIPVKKTEK 82

Query: 172 RPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
              +   ++       Q       G +       +  SG R  +        ++ ++   
Sbjct: 83  PSISYLSLEGIRLLLEQPDCSTRNGRRDLALLSLMYDSGARVQEIIDLTPSMVRLDVPCT 142

Query: 225 K--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM---------NATQFSIWF 273
                K      V L D  +K L    + ++    + +   +              +   
Sbjct: 143 VKLIGKGNKSRVVPLLDVQVKFLKTYMVEQKLLEPHANLYPLFSNSRKEKLTRAGVNYIL 202

Query: 274 KAKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           +  A +A +          S H +R   A     +G     +    G  +V   E Y + 
Sbjct: 203 EKYAKQARLKNPTLIPEKLSCHCLRHSKAMHLLQSGVNLVYIRDILGHTSVQVTEVYART 262

Query: 326 ADR-IRLGIKNS 336
             R  R  I+ +
Sbjct: 263 DSRQKREAIEKA 274


>gi|253774276|ref|YP_003037107.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253325320|gb|ACT29922.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|313848583|emb|CAQ31222.2| enterobacteria phage lambda, integration protein [Escherichia coli
           BL21(DE3)]
          Length = 307

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 17/293 (5%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---GSTPKREY 60
              LPP +     R+     Y     G+   L          A  + +    G   K   
Sbjct: 9   RRDLPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLT 65

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
                    TL   +  Y K      +   + I++ S    I R   D     ITTK I 
Sbjct: 66  ARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125

Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           + +     +   +SA    +++   F+ A+ + ++  N   +    K +    R    E 
Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEY 185

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           ++ +++  S     RLA E  + +G R  D C      + +    ++  KTG  I +   
Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTA 245

Query: 239 DGFMKLLAMTPIGKETFFIN---------NDKQKMNATQFSIWFKAKATKAGV 282
                L        +                ++ +++   S +F      +G+
Sbjct: 246 LHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGL 298


>gi|229551629|ref|ZP_04440354.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
 gi|229314947|gb|EEN80920.1| bacteriophage integrase [Lactobacillus rhamnosus LMS2-1]
          Length = 376

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/373 (8%), Positives = 92/373 (24%), Gaps = 49/373 (13%)

Query: 16  TRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R  K  Y           + +               + +     +   ++       TL
Sbjct: 7   KRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERQHNRGANLDL---NKITL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
                ++ +    G  +  +   +++   Q++   G+  + + I+    ++ +       
Sbjct: 64  IDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQAFINEFGKKR 123

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQF 182
           +  +  +    +R +   AV  + +  N   +        +            ++ +   
Sbjct: 124 AKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYC 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---- 238
             F                +G R S+       H+      +   +T             
Sbjct: 184 LEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAATK 243

Query: 239 ------------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                      + L       K+  F +     +++T  +   +
Sbjct: 244 NKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSIRHNMLSSTAINKDLR 303

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RI 329
                  ++   + HG+R    +         + +    G       +  Y    +  R 
Sbjct: 304 TIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQRK 363

Query: 330 RLGIKNSRRISSV 342
               +  + +S +
Sbjct: 364 EQVSQTLQALSRL 376


>gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15]
 gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15]
          Length = 449

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/301 (8%), Positives = 77/301 (25%), Gaps = 47/301 (15%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129
              ++ +          +  +  ++  +  +  R   +   ++++T  ++  +       
Sbjct: 133 WDEVLGKLAAEIKVRHYSRKTLKTYALWSRKFQRFLKNKPPQELSTADVKEYLTYLAVKC 192

Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEY---------------------------------- 152
               S+  Q   S+  LF+  +++E+                                  
Sbjct: 193 NVAASTQNQAFNSLLFLFRHGLKREFGELRDVPRAKKSLYVPVVLSREEIDAILKHLSHP 252

Query: 153 --VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             + +N          +   +R           +   +G + R             +   
Sbjct: 253 FSLVVNLLFGCGLRLFECLQLRVRDFNFDAVVLTVHGKGKKDRTVPLPEAILPELTAQIE 312

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-----TFFINNDKQKMN 265
           R    H ++             +  + P    +L+      ++            +  ++
Sbjct: 313 RVKALHEKDLAAGYAGVFLDDAVEKKYPHAPKELIHQWFFPQQSLTLVEETGELRRYHLH 372

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            +           +A + K  +AH  R   AT    A      +    G  ++     YT
Sbjct: 373 ESLLQEALYVAVRRAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYT 432

Query: 324 K 324
            
Sbjct: 433 H 433


>gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 389

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 108/380 (28%), Gaps = 56/380 (14%)

Query: 4   SLRLPPFVTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMS----------- 49
            +       + + + GK   Y         RRI L                         
Sbjct: 3   KISYSVRFFEYKKKSGKAGIYLQLVIDRVARRIPLEEEFYPELFDKVKEQFRYDGINDEE 62

Query: 50  ------------ALTGSTPKREYINSPRKKPTTLK-------------WLISEYRKSAHW 84
                       A      +R  +   +    + K                 +  +S   
Sbjct: 63  ITDLNLLLNKYKARANELLRRYRLADRKVTHDSFKMEFLNYASRDKFVEWSKQKLESLKM 122

Query: 85  GSL-AVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH----TPSSAIQFLT 138
           G L    +    +S        +G D  + ++T + I       +       +S      
Sbjct: 123 GDLIKTQTYKHKKSRLKHFEEFAGTDILFSELTPEKIAGFDNHLRKVKKLKHNSIQAIHV 182

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQQFKSFWSEGSQP 192
           S+    + AV  +    NP    +    K     P   +       + + +       + 
Sbjct: 183 SINGFIREAVECKVNVENPYKKFKIKAYKRGKRDPLEIDELKRLKHLYKAQHLEEIQQEV 242

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
              + F   +GLR SD+     ++++N + +I T K  +   V         +++  I K
Sbjct: 243 LRKYLFSCETGLRISDNNALDYENIENKVLTINTVKGESFGVVVTVPLTKYAISLIDIKK 302

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310
               +  +    +    +   K  A+KA +  N + H  R   AT   DAG  A  L   
Sbjct: 303 RRGPVFRNI---SDQVVNRNLKVIASKAEIYRNLTFHSSRDTMATNFIDAGGNAETLKEL 359

Query: 311 YGWKTVDQAETYTKGADRIR 330
            G   +     Y K ++  +
Sbjct: 360 LGHSDIKTTMIYVKISEARK 379


>gi|301163037|emb|CBW22585.1| putative integrase [Bacteroides fragilis 638R]
          Length = 400

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 80/263 (30%), Gaps = 20/263 (7%)

Query: 89  VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143
             +  ++E+    + +     DF +  ++++ +    ++             +L +M+ +
Sbjct: 126 EGTAKAYEATLHSMQKHLCKTDFPFAHLSSRLVIKYRDTLLEAGVGKNTIGFYLHNMKAV 185

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFL 199
           ++    +  +         R + +    +      ++       S  +     R  F F 
Sbjct: 186 YRRGCLELNLVFPSPFCNIRIRSEKTVKQSLPMNQVKSLANLSLSVGTPECLARDVFMFS 245

Query: 200 LYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +Y+ G+   D        +   +   + QKTG ++ + +      LL         +   
Sbjct: 246 IYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDTSGDYLFP 305

Query: 259 NDKQKMNATQ--------FSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELM 308
              +                   K  + +    +    H  R   AT++ + G   H + 
Sbjct: 306 LVDESETPYSGYKKAYNKIRYALKKISQRIDINIPLRLHAARHCWATMARENGTPLHTIS 365

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +      Y K  DR  L
Sbjct: 366 ECLGHSSEKVTRIYLKELDRSVL 388


>gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 335

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 37/304 (12%)

Query: 71  LKWLISEYRKSA--HWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIR 120
              LI ++         +++  +  S+   F  +   +                  + I 
Sbjct: 10  FSTLIQQFFMDRLIEQRNVSPRTVASYRDTFRLLFSFAENDLNKPPHKLRLVDFNAELIL 69

Query: 121 SGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--- 173
           + ++  + T      S    L ++R    +A  QE  A+     V     K         
Sbjct: 70  AFLKYLETTRHNAIRSRNARLAAIRSFAHYAALQEPSALPGLQRVLAIPMKRFDRPMVGF 129

Query: 174 WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ 227
            ++E+MQ   +        G + ++    L  +G R S+     V+ +       +    
Sbjct: 130 LSREEMQCILAAPAANSWCGQRDQVMLATLYNTGARVSELIAMRVRDVVLDRGACANLHG 189

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGV 282
           K     TV L  G  K +                      +M  +  +   K  AT A +
Sbjct: 190 KGRKERTVPLWAGTAKQIRRWLHQINPDPDQWLFPNRAGGQMTRSGVTDRLKVAATGASI 249

Query: 283 NK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
                     + H VR  +A     AG     +    G ++      Y +      +  +
Sbjct: 250 RCPQLKTRSVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIEADLAMKQRAL 309

Query: 334 KNSR 337
              +
Sbjct: 310 NAIQ 313


>gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii
           DSM 18315]
          Length = 333

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 21/266 (7%)

Query: 92  RISFES---YFDQIIRKSGDF-DYRKITTKHIRSGVESR-----------KHTPSSAIQF 136
           R  +E     ++   +  G    +  +T +      +               + +SA  +
Sbjct: 70  REKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGY 129

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++ R L K A +++ +  N    +E+ + K       T +++++  +   +    + A 
Sbjct: 130 YSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQAS 189

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F   +GLR SD  +   +  +         +  T       +  + +            
Sbjct: 190 LFACMTGLRISDILKLDWRDFEVGPDQGYYIRICTE--KTETEATLPISQEALELCGEGG 247

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                + +  +      K    +AG+ K  + H  R   A I    G   + +      K
Sbjct: 248 TGKVFKGLTRSMTHHPLKQWIAEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 307

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
            V   + Y    +  +   + + +IS
Sbjct: 308 NVTTTQIYADLVNSKKR--ETANKIS 331


>gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
 gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612]
          Length = 303

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 94/308 (30%), Gaps = 42/308 (13%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HIRSGVES 125
           +  T+K  +S   +     S ++ +  S+E     I+   G+    ++       S   +
Sbjct: 3   EKITMKEWLSR--RVPKVKSSSLKTYRSYERA--HILPSLGNIPISEVGAMLPAFSVQLA 58

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            +    +    LT +  + +     E   +    ++ +   + +     T  + +   + 
Sbjct: 59  ERLAHKTVRDILTYVHTILR---EAEAKGLAEASNMPKITMEPKEKEVLTYSEQKALTAR 115

Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------------QNNIF 222
                +   +A    L +GLR  +      + +                         + 
Sbjct: 116 LRQSAAPLDMAVLLALATGLRLGEVAGLRHKDIDLEAAVLRVRRNSQRVYDGHDGHTPLK 175

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
           +   +   +   + LP  F+ +LA     +E                 +       F   
Sbjct: 176 NTTPKTRRSRRDIPLPRAFVAVLARYMEDREGQPAAAPLIAAPGGSAYDPRTIERRFDKL 235

Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRIRLGI 333
             + G+    + H +R   AT + +AGA    +    G  +V      Y+  A   +L  
Sbjct: 236 KAEHGLSSGVTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFTMNCYSHSAT--KLKR 293

Query: 334 KNSRRISS 341
           +   +I+ 
Sbjct: 294 EQMEKINE 301


>gi|212703057|ref|ZP_03311185.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
 gi|212673645|gb|EEB34128.1| hypothetical protein DESPIG_01096 [Desulfovibrio piger ATCC 29098]
          Length = 287

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 82/282 (29%), Gaps = 17/282 (6%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T + L  +Y        +   +R S   + +Q++   G +  R++    +R  +  +K 
Sbjct: 1   MTARQLAEDYLAHQITRDV---TRTSTRHHLNQLLALFGGWQARRVGADQVREFLAVQKT 57

Query: 129 TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                ++A   +   R +  WAV    +  +P       + +   I P T+ +  +    
Sbjct: 58  RGVMATTAHHRVRLWRTVLAWAVETGRLPASPLAGFRLHRPRARRIDPPTRAEAARMYKV 117

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDG 240
            +   +  +         +  S+  R     +      ++              V + D 
Sbjct: 118 AAPHIRRVIVLGMAAGPRIGPSELFRLAWADVDLAAGYMRMPNAAKGSRDDSRIVPIRDD 177

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
            + LL       E                     +      AG+ +  + + +R    T 
Sbjct: 178 ILPLLRAWKEEDEKQGCPWVIHWQGRPVRCIGHAWHQARKAAGITRRITPYSLRHAMPTE 237

Query: 297 SADAGATAHELMATYGWKTVDQAET-YTKGADR-IRLGIKNS 336
           + + GA    +    G          Y     R  +  +  +
Sbjct: 238 ALEHGADVKAVAEVMGHADPTMLLRVYQHTRYRLKKKAVNAA 279


>gi|94496231|ref|ZP_01302809.1| integrase [Sphingomonas sp. SKA58]
 gi|94424410|gb|EAT09433.1| integrase [Sphingomonas sp. SKA58]
          Length = 437

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 105/369 (28%), Gaps = 44/369 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +  + +  G + +      HGRR  L      P   +   A  + +             
Sbjct: 43  GLYVQVSTSGTLTFRLDYRLHGRRETLTLGKYGPSGLSLARAREATIDAKRAVFEGRSPA 102

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++      K+  +       +        +A ++R    S F++ ++    +    +I
Sbjct: 103 QEKQRDKRRIKEAKSFGEFGERWL---VKAPMADSTRAMRRSIFERELLPVWKNRLLTEI 159

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+          P++AI     ++ ++ +A+       NP   V      T   +
Sbjct: 160 TPDDLRAHCGKIVDRGAPATAIHVRDILKQIYGFAILHGEKVANPADDVGPASIATFVPK 219

Query: 173 PWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             +    +                 RL     L + +R S+   A    +          
Sbjct: 220 DRSLSPTEIRVMLKQLDHVATLPTIRLGMRLFLLTMVRKSELQDAVWDEVDFENAVWTIP 279

Query: 228 KTGTIITVELP----DGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKA 275
           K     +           + ++                 +  +    +    + +     
Sbjct: 280 KERMKRSKAHNVYLSQQCLDIMIALKTCAGNSRYLLPSRYDADAPMSRATFNRVTYAVVE 339

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA---DR 328
           +A K G+     + H +R+  +T+  + G  +  +      +    +   Y K      R
Sbjct: 340 RAQKEGLPLEPFTVHDLRRTGSTLLNELGFNSDWIEKCLAHEDGRSSRGVYNKAEYEHQR 399

Query: 329 IRLGIKNSR 337
             +  + S 
Sbjct: 400 RHMMQEWSD 408


>gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
 gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 90/282 (31%), Gaps = 31/282 (10%)

Query: 92  RISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW 146
             ++ +   ++            ++I    I   + S     + +S   +  ++   F +
Sbjct: 74  VSTYFNPLKKLFDYLTFYKLHSLKQIDEALIVEILASITGALSDASKKNYRIAVMNFFDF 133

Query: 147 AVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDMQQFKSFWSEGS------QP 192
             RQ        +     K           +     +++++++F              + 
Sbjct: 134 LNRQNEEDSKAHIFDINLKNWAGVSGARGIKLPEFMSEDELKKFLEAVDNADFKANTIRN 193

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245
           +L  + ++++G+R S++    ++ +         +         L     +L+       
Sbjct: 194 KLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVMIKKELISTLLDNV 253

Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301
                      F+N     +     S   +    KAG+ K    AH +R   AT+     
Sbjct: 254 KINYLSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKNGAHMLRHTFATLLYKKQ 313

Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSV 342
                +    G  +++ +  YT   +++++L  K +  +S  
Sbjct: 314 KDLVLVQEALGHASLNTSRIYTHFDSEKLKLAAKVAEELSKK 355


>gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
 gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075]
          Length = 160

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305
                  F   +    +++ Q     +  A  AG+ K  S H +R   AT   +      
Sbjct: 55  MLPHGWLFPGRSCTDPISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIR 114

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN-SRRISSVVDSDDP 348
            +    G   ++    YTK +      +     R+ ++++   P
Sbjct: 115 VIQVLLGHSKLETTALYTKVSTPTIHAVAGPLDRLMALMEGKTP 158


>gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            G+  +   +    +       +  ++ +      K    KAGV    + H  R   AT 
Sbjct: 74  WGWQWVFPASSHFTDRVTGEQRRHHVHESVLQKVVKQAVHKAGVSKPATPHTFRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G   V     YT   
Sbjct: 134 LLEDGYDIRTVQELLGHSDVTTTMIYTHVL 163


>gi|2618951|gb|AAC48882.1| integrase [Phage 21]
          Length = 356

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 96/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F+S        +      L +G R  D C      + +++  I  +KTG+        
Sbjct: 179 AIFESVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPLNL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735]
 gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRS--- 121
           L  LI E ++S     +   S  ++ S   ++           D  +  +T   I     
Sbjct: 114 LDMLIKE-KESHIGIDIKEESMSAYHSTRKRLQEFIQKKYHVSDLAFSLLTENFIYELQT 172

Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
             +    H  S+  +    ++ + + A R+         +V   +   +  +   KE + 
Sbjct: 173 FCLGGLGHQQSTFFRIAADLKTVCRLAYREGLADTLLFDNVHIERGNKKAPKALDKEALD 232

Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                +F     E    R  F F  Y+G    D      +HL  +       K       
Sbjct: 233 KLKALRFDELEKEMETARDVFLFACYTGAAYCDLMELSKEHLVRDDAGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E    +  +     M    +    KA   +A +    ++H  R
Sbjct: 291 TGVLCRIKLLPEAIRLIEKMHSDERETLLPFMGYKNYQSCLKALRLRADISFPFTSHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   V   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQK 390


>gi|302866310|ref|YP_003834947.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
 gi|302569169|gb|ADL45371.1| integrase family protein [Micromonospora aurantiaca ATCC 27029]
          Length = 378

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 96/365 (26%), Gaps = 40/365 (10%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           R  K     R   G  +     H+        +        R+    PR     L   + 
Sbjct: 7   RGMKFRVRLRMTDGT-VTTDSTHDRRADAVIRAKEIDVEVARDTFIDPRGGRIPLAEWVP 65

Query: 77  EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSA 133
            +  +      +  +  ++ S+    I+   G      I  +HI++   +      P S 
Sbjct: 66  IWESTHQA---SPATWAAYRSHLRLHILPTLGPLPLVDIRRQHIKTLAVALGKRLAPRSV 122

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              +  + ++ + AV    +  NPC  +  PK         T E +              
Sbjct: 123 ADVIMVLSMVLQEAVEDRRIPFNPCRGIRIPKGIRAERPHATAEQVAA-IVARQARPSDG 181

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-------------------LQNNIFSIKTQKTGTIIT 234
           L      Y+G+R  +       +                   ++  ++    +   ++  
Sbjct: 182 LMVLTAAYTGMRWGELAGLHRDNLDLTLGSIYVHPDTGALHEVEGKLYLGPPKTNDSVRH 241

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA------GVN----- 283
           + LP     LLA          +    +  +  + +   +A            +      
Sbjct: 242 IRLPRFLTNLLATHLAEHLHDTVFPGARGYHQRRSNFNRRAWTPALTGGPQRDIPPILPG 301

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              H +R    T   + G          G +       Y+   +   +       +    
Sbjct: 302 MHFHDLRHTHKTWLIEDGIPEIAQARRLGHRLAGVRGIYSHVTEP--MITNLVDALQRRW 359

Query: 344 DSDDP 348
           ++  P
Sbjct: 360 ETTHP 364


>gi|158313295|ref|YP_001505803.1| integrase family protein [Frankia sp. EAN1pec]
 gi|158108700|gb|ABW10897.1| integrase family protein [Frankia sp. EAN1pec]
          Length = 380

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 113/360 (31%), Gaps = 40/360 (11%)

Query: 2   TPSLRLPPFVTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            PSL L  +      ++G   +    +R   G R RL   H  T   A  +  T    + 
Sbjct: 3   RPSLNLGTYGNLYTAKYGDGYRARARYRDFDG-RTRLVERHAKTKGAAEQALRTALRDRA 61

Query: 59  EY--INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
                         +  L   + +S      + N+  ++ +  D+ +I   G+   R++T
Sbjct: 62  RVDVGTGAITAEAKVAVLAEAWYESVQRQDRSPNTTAAYRTRLDKSVIPGLGELRIRELT 121

Query: 116 TKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGI 171
              +   +   + KH P++A Q    +  +   A R + +  N              +  
Sbjct: 122 VGVVDRFLSIIAEKHGPAAAKQTRAVLSGMCGLAARHDALDRNVVRDAGPIAEATSKDQP 181

Query: 172 RPWTKEDMQQFKSFWSEGSQP--RLAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           R  T + +++ +       +   R   EF+   + +G+R  ++       +  +   I+ 
Sbjct: 182 RALTLDQLRELRVALRNDPKAVGRDIPEFVDLLMSTGVRIGEAAGLTWGAVNLDEGWIEI 241

Query: 227 QKTGTII--------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------MN 265
           + T   I                 + L +      T     D Q               +
Sbjct: 242 RSTVVRIKGQGLFNKPKPKTKAGHRRLQLPSWMIRTLKQRFDNQPDDVTVFPAQLGGLRD 301

Query: 266 ATQFSIWFKAKATKAGVNK-SAH-GVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
            +      +      G+   ++H   RK  A+    AG TA       G + V   +  Y
Sbjct: 302 PSNTQADLRDAFKAVGMEWATSHIVGRKSVASAMDSAGLTARAAADQLGHRQVSLTQDRY 361


>gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T    +G     +    G   V     YT 
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|289164001|ref|YP_003454139.1| phage-related integrase [Legionella longbeachae NSW150]
 gi|288857174|emb|CBJ10990.1| putative phage-related integrase [Legionella longbeachae NSW150]
          Length = 410

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 30/346 (8%)

Query: 23  YYFRKGHGR-RIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPTTLKWL 74
           Y +R    R  I + +    +   A    +           PK +     +K+ +T+K L
Sbjct: 43  YRYRINGQRHFITIGHYPAMSLSEARKRFIDLSDIRHGEVNPKEQIAEQKQKEQSTVKNL 102

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I  +  +      A      ++     II   G+     + T+ I   ++    + +P  
Sbjct: 103 ILHWYTNYIEKHRAQ-PLQIWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPVH 161

Query: 133 AIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
           A + L++++  F +AV +          +       +E+P+ +   +             
Sbjct: 162 ANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLTLDEVKILWQFLDSE 221

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
                 Q R A + +L +G+R  +   A                  T   + +     +L
Sbjct: 222 EHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEL 281

Query: 245 -------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296
                  L      +      +D+  ++            ++ G+   +AH +R+  AT 
Sbjct: 282 TKKVLRELKAHSDSEYVITGADDQSILSDRAMPRAVIRIQSRVGIPHWTAHDLRRTFATQ 341

Query: 297 SADA-GATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
             ++       +    G K      TY K     + +  ++    +
Sbjct: 342 LGESLHVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWATL 387


>gi|213968068|ref|ZP_03396213.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
 gi|301385270|ref|ZP_07233688.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. tomato Max13]
 gi|213927048|gb|EEB60598.1| site-specific recombinase, phage integrase family [Pseudomonas
           syringae pv. tomato T1]
          Length = 367

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 109/361 (30%), Gaps = 45/361 (12%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG 53
           M P  R      LPP + ++   R+G   Y +R     R+      +         A   
Sbjct: 1   MVPRPRNAGSKDLPPNLYRKTDKRNGHTYYTYRDPVTGRM-FGLGKDKAAAIMEAVAANH 59

Query: 54  STPKREYINSPRKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +   +  +     +P      T    + EY        L+ ++  S +S    +    G 
Sbjct: 60  ADVLKPTLRERLAEPIAEQDRTFADWLVEYDLIYPERGLSSHTTRSIKSRLKALKDAFGS 119

Query: 109 FDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              R I T  I + + +      +  +    + +R +F  A+   +  +NP  + +  + 
Sbjct: 120 RYLRSIRTMDIATFLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARS 179

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           K +  R     ++ +     ++    + A E  L +G R  D      +   +    +  
Sbjct: 180 KVKRSRL--SLELWKAAHAATDRPWLKRAMELALLTGQRRDDIASMLFKDEYDGFLHVVQ 237

Query: 227 QKTGTIITVELPDGFMKL---LAMTPIGKETFFINNDKQKMNAT---------------- 267
            KTG  + +        +   L+          ++        T                
Sbjct: 238 SKTGARLRISTALRLEAIDLDLSSVVRMCRDRVLSKHLVHHTRTVAVAKAGSPIKLTTLT 297

Query: 268 -QFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             F+      A   G++      S H +R  +A + +  G          G +     E 
Sbjct: 298 LAFAQARDKGAAALGIDLGENPPSFHEMRSLAARLHSAEGRDP---QKLLGHRNAAMTEM 354

Query: 322 Y 322
           Y
Sbjct: 355 Y 355


>gi|212715996|ref|ZP_03324124.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661363|gb|EEB21938.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM
           16992]
          Length = 406

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 99/388 (25%), Gaps = 67/388 (17%)

Query: 20  KIIYYFRKG-------HGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
           K  ++FRK          RR  +       +   A   A      +   + +     T  
Sbjct: 21  KGRWHFRKDMGTDPATGRRRPPIEATGMVKSEARARFQAKIAEWERDGRLPTKDGPKT-- 78

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
                 + +     ++   +  +  S+   +    G+    ++T   I       + T  
Sbjct: 79  ADYFERWMEEHR-TAVNPTTWRNESSWMRTMNAIIGNIRLNRLTADDINGMCRRLRRTRK 137

Query: 132 --SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185
             +   +L  +  + + A R   +A +P  +V R              D  +        
Sbjct: 138 SKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALAE 197

Query: 186 ----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                       E  +  L FE    +G+R  +        L+ +              +
Sbjct: 198 PDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGIPVINVCQQAKPI 257

Query: 236 E--------------------------------------LPDGFMKLLAMTPIGKETFFI 257
                                                      +  ++          F 
Sbjct: 258 PAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVFT 317

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316
           N   + +        ++     AG+     +  R + AT  A AGA+  E  A  G   +
Sbjct: 318 NLYGRPIRRDNEEKRWRRALKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTDI 377

Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344
                YT   +R RL       +  + D
Sbjct: 378 HTTSVYTHWRER-RLAKTLDAALPDLRD 404


>gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630]
 gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile]
          Length = 397

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 93/380 (24%), Gaps = 65/380 (17%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-- 66
            +  K     GK  + +         +P           ++        ++ ++      
Sbjct: 24  RYAYKYIDTFGKPQFVYSWK-----LVPTDKTPAGKRDDIALREKEKEIQKDLDDGIDHI 78

Query: 67  -KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGV 123
            K  T+      Y K      ++   ++   +     +   K G      +     +   
Sbjct: 79  GKKMTV---CQLYAKQIRHRANVGHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWA 135

Query: 124 ESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKED 178
              K       +      S++  F  A++ + +  NP         +  TE   P +   
Sbjct: 136 LRMKEKGYGFKTINNHKRSLKAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQ 195

Query: 179 MQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------------ 217
              F           +       LL +GLR S+ C      +                  
Sbjct: 196 EAAFLSFVQHDKVYQKYYDEIIILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIAD 255

Query: 218 --------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
                         +    S K  +    +  +       +L               K  
Sbjct: 256 VGYYVETPKTKSGNRIIPMSEKVLEAFQRVLNKRKYTQPVILEGYTKFLFLNRNGLPKVA 315

Query: 264 MNATQ-FSIWFKAKAT--KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
           +N    F    +      K  + K  + H +R    T  A+AG     L    G   ++ 
Sbjct: 316 VNYESMFRGLVRKYNKTQKVALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINM 375

Query: 319 AETY-------TKGADRIRL 331
              Y       T   +  RL
Sbjct: 376 TLNYYAHTTSETSITEMKRL 395


>gi|91069971|gb|ABE10899.1| putative site-specific integrase/recombinase [uncultured
           Prochlorococcus marinus clone ASNC2259]
          Length = 321

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 91/319 (28%), Gaps = 19/319 (5%)

Query: 17  RHGK-IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           R G       R+ +    R           ++  A+       +     +  P TL   I
Sbjct: 6   RSGSGWQVLIRRKNYVGPRSRTFLSRDLAQSWADAVE-----EKTKKVFKDIPFTLGEAI 60

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           ++Y         +     + +           GD     +  KH     + R  K  P++
Sbjct: 61  NDYINGPLLLHRSA---ENEKYPLRVTAESWLGDIPLSDLQIKHFAVWRDERLLKVKPNT 117

Query: 133 AIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSE 188
            ++ L  +RVL  WA  +    +  NP   +            +T +D Q+         
Sbjct: 118 VMRELRILRVLIDWARDERGAEIKDNPARHLRVRGTGDARAPFFTDQDEQRLLFELSQMS 177

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
                   +  L +G R S+      +++  N   +   +     T       +  L   
Sbjct: 178 NKNHLRLTKLALATGFRRSELLSLTWRNIDLNKKLLYIHRKNCAATDNYSAPRLIPLPGK 237

Query: 249 PIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAH 305
                      +    ++        F     +A +     H +R    +    +G  A 
Sbjct: 238 AKKILEELSERHGKIIELTKGAARHGFDKARKRADLETLRFHDLRHIGISRMWSSGMNAL 297

Query: 306 ELMATYGWKTVDQAETYTK 324
           E+ A  G + +     Y+ 
Sbjct: 298 EISACSGHRDIKMLMRYSH 316


>gi|33602518|ref|NP_890078.1| phage integrase [Bordetella bronchiseptica RB50]
 gi|33576957|emb|CAE34037.1| phage integrase [Bordetella bronchiseptica RB50]
          Length = 407

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 74/285 (25%), Gaps = 41/285 (14%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           Y K A  GS++ ++ + +       +  + GD    ++    +R+ +     T  +    
Sbjct: 96  YEKQAANGSISASTLLGYAKAIKHYLRPRWGDTPVNELAPADLRAWIAGMGVTGKTVRNR 155

Query: 137 LTSMRVLFK-----------------------------------WAVRQEYVAINPCLSV 161
           LT +R +                                     + + +         + 
Sbjct: 156 LTPLRSVLDDAVNDELLDSNPLDRIALGKLIKQTATKSNYEVDPFDMDEVAALCKAARAD 215

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
           E P  +          ++Q  +    +    R+  +  + +G+    + +          
Sbjct: 216 ELPLIQFWFEAGLRPGEIQAVEWSSVDWVHGRVRIDDNIVTGMVEGKATQVRKAPKTQAG 275

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
                     +  ++    F  L                          +       +AG
Sbjct: 276 IRDVDLSPLALAALKAQKAFTFLAGGRIWHDPRKNEPWASDAQIRKSLWLPL---CKRAG 332

Query: 282 VNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           V     + +R   A+    AGA    +    G   V+   + Y K
Sbjct: 333 VRYRNPYQMRHTYASTRLTAGANPWYIADQLGHTDVEMVFKIYGK 377


>gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
 gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135]
          Length = 388

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 74/271 (27%), Gaps = 20/271 (7%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSG-- 122
            +  I  + K     +    +  S+    + +           D  +  +    I +   
Sbjct: 113 FRTFIEHFEKRVGV-NREKGTAQSYRYACNCVAAFIQEKYKLSDVPFTALNRSFIDNYDL 171

Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                R+    + +  +T +  +   A+ +  +  +P    E    + E  +  T  ++Q
Sbjct: 172 YLRTERRFALGTIVLLVTRLNTIVGEAIAEGIITADPFAGYEAEHPEREQ-KYLTAVELQ 230

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITV 235
           +  +      +       F F  Y+G+   D CR   +   +  +               
Sbjct: 231 RLMTTPLHDPKLYHIRDLFLFSCYTGIPYGDMCRLTTEDLEVAEDGEVWIKTARKKTKID 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293
                    L +    ++           +  + +   K  A   G+ +    H  R   
Sbjct: 291 YEVPLLDIPLLILDKYRDMAPEGKLLPMYSNNELNRTLKRIAAICGIERKLVFHCGRHTY 350

Query: 294 ATIS-ADAGATAHELMATYGWKTVDQAETYT 323
           AT      G     +    G   +   + Y 
Sbjct: 351 ATEITLSHGVPLETVSKMLGHSRISTTQIYA 381


>gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium]
          Length = 158

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 7/124 (5%)

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264
           R  +  R G   +       +                   L++ P  +E    +  +   
Sbjct: 45  RHGEEVRKGGGKVFMPSALDRKYPHAQRSWAWQYVFPAAKLSVDPRSREVRRHHVQE--- 101

Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                    K    +AG+ K  S H  R   AT   + G+    +    G K V     Y
Sbjct: 102 --KNLQNAVKLALRRAGIAKAASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIY 159

Query: 323 TKGA 326
           T   
Sbjct: 160 THVL 163


>gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
 gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 84/314 (26%), Gaps = 21/314 (6%)

Query: 29  HGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKK--PTTLKWLISEYRKSA 82
            G R R  +  ES      + +    + G         + R+   P TL  L+    ++ 
Sbjct: 16  KGARHRRSFATESEAELWELDSKAKLIRGEPIDMGEKAAKRRGDLPYTLGELVQHVYETH 75

Query: 83  HWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138
                  +      +  + I+ + G +    K+    +           + P +  + + 
Sbjct: 76  WAPM--PSGAKQLINA-NLIVAEIGANLPVAKLGKADVDRARSKLLAAGNAPGTVNRKVA 132

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198
           ++      A     +   P  +  +            +E                     
Sbjct: 133 ALSKCLSEAEDLGIIERKPKCNKYKESEHRVRRFTPDEEKKTLAFFDRIGHQDMADYTVL 192

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKET 254
            L +G+R S+      + +QN   ++         T            +  A+    +E 
Sbjct: 193 SLDTGMRQSEVLSLHFEDIQNGRVTVWGVGATGQRTKSGKSRTVPLTARAQAVFDRRREY 252

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMAT 310
                    ++    + ++   +    +        H +R    +  A  G  A  +   
Sbjct: 253 TEGKAVFPSLSKNSVAHYWGRLSEALNLESDKQFVPHILRHEFCSRLASNGENAAAIQKL 312

Query: 311 YGWKTVDQAETYTK 324
            G  T+   + Y  
Sbjct: 313 AGHATLLVTQRYVH 326


>gi|294649660|ref|ZP_06727072.1| phage integrase family site-specific recombinase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824439|gb|EFF83230.1| phage integrase family site-specific recombinase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 409

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 96/368 (26%), Gaps = 32/368 (8%)

Query: 9   PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGS------------ 54
             +       G   +   ++K  G+   L                               
Sbjct: 32  KGLYFRVKPDGNKSWQLRYKKPDGKWSWLGIGGYPEISGQLARKKAQELITDISKGENPV 91

Query: 55  -TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
            T +            T + L  E+  +     +A     +  +    I    G   Y  
Sbjct: 92  ITKQERKRKELEDNNATFEALAREWLDAKQNRWVADTMTRNKGALEKHIYPVFGKRLYTT 151

Query: 114 ITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           I      + ++  +          +     R ++ +A     +  NP   + +   + + 
Sbjct: 152 IRPIEWMNHLKGIQQEHKIYEQVNRIRAMCRDIYDYAKVTGRIDYNPLEGLHKFLEQGDK 211

Query: 171 IRPWTKEDM------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                 ++       +  +++ +   +  L    +L+               L + +++I
Sbjct: 212 KNMAHVDEKELPQLLRAIENYPTPDMRIGLKLLAMLFCRPSELREATWTEFDLDSAVWNI 271

Query: 225 KTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAG 281
             Q+        +P     ++LL                +  +    S   F     + G
Sbjct: 272 PEQRMKKRREHIIPLPSQSVQLLQELKPLSGHSDYLFPSRSNSHKPKSDTVFIMALRRLG 331

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNS 336
                + HG R  ++T+  + G     + A         A  Y K     DR  +    +
Sbjct: 332 YEGRQTPHGFRHIASTLLNNKGFDERHIEAALAHVKDGVAGVYNKAQYLQDRKYIMQWYA 391

Query: 337 RRISSVVD 344
             +  + D
Sbjct: 392 DHLEQLAD 399


>gi|206577681|ref|YP_002237145.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
 gi|206566739|gb|ACI08515.1| site-specific recombinase, phage integrase family [Klebsiella
           pneumoniae 342]
          Length = 416

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 104/348 (29%), Gaps = 28/348 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 70  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 127

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
            +A  +R    + F++ +  K G+    +IT + +R+  ++      P++A+     +  
Sbjct: 128 -MAEKTRDMRRATFERELKPKFGNQKLTEITHEDLRALADAIVERGAPATAVLCREIVMQ 186

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +F+WA+ +     NP   V          R           M Q+          R A +
Sbjct: 187 VFRWAIERGQKVENPADLVRPSTIAKFEPRDRALTPDEIALMYQYMERIGTTPSIRAAAK 246

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     + L +         
Sbjct: 247 LLLLTMVRKSELTNATWSEINFTDALWTIPKERMKRRNPHLVFLSRQTLDIFIALKTFAG 306

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G        H +R+ ++T+  +AG 
Sbjct: 307 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGY 366

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
               +      +       Y K    D+ R  +++   +        P
Sbjct: 367 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWADMIDEWTIRKP 414


>gi|93005789|ref|YP_580226.1| phage integrase [Psychrobacter cryohalolentis K5]
 gi|92393467|gb|ABE74742.1| phage integrase [Psychrobacter cryohalolentis K5]
          Length = 414

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/321 (10%), Positives = 88/321 (27%), Gaps = 36/321 (11%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109
           L   T   +   +   +  T +  +  + +         + R   +      ++ + G  
Sbjct: 66  LKEMTALADRAEACISRNPTFRQFVDIWYEEKKI-EWRPSYRQKTQIILDKYLLPEFGGK 124

Query: 110 DYRKITTKHIRSGVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
               I    + +   S              + +   Q +  +R++ + A  +      P 
Sbjct: 125 AVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARINQIMILLRMILEEASDRHE-FEMPY 183

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
            +++  K+    + P+T  ++           +P   +    ++G+R S+        + 
Sbjct: 184 KNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPY--YTIRFFTGMRTSEIDGLKWDCIN 241

Query: 219 NNIF------------SIKTQKTGTIITVELPDGFMKLLAMTPIGKE-----TFFINNDK 261
            +                 T+  G+   + +       L              F  +   
Sbjct: 242 FDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQGN 301

Query: 262 QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319
                      +K      G+    A+  R  +AT+   AG     +    G  + +   
Sbjct: 302 PMEYRNVNRRVWKPTLALLGLKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEMLF 361

Query: 320 ETYTKGA-DRIRLGIKNSRRI 339
             Y++   D  R        +
Sbjct: 362 RVYSRYVPDITRQDGSAMDNL 382


>gi|300770347|ref|ZP_07080226.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762823|gb|EFK59640.1| possible integrase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 312

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 76/262 (29%), Gaps = 18/262 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            L+ ++   ++    Q +       +   T  + +  +     + S+  ++  S ++  +
Sbjct: 36  DLSQSTIKDYKYRIGQFLDYVNSSGFNHNTLLNYKRQLIKCDFSVSTKNKYFISAKIFLR 95

Query: 146 WAVRQEYVAINPCLSVE-RPKRKTEGIRPWTK------EDMQQFKSFWSEGSQPRLAFEF 198
              R +Y+  +  ++V+   +         +       ++  +      E  + +     
Sbjct: 96  ELYRLDYLEKDITINVKGFKQNHQHKKDGLSDDDISILQNHCKTLQPTPENLRLKAIISL 155

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELPDGFMKLLAMTPIG- 251
            L+ GLR  + CR  ++ +            G        +         + L  T    
Sbjct: 156 FLFQGLRQIEVCRLDIKDIDLKNKCAFVHGKGRDDKELIWLHPFTVKAVKEYLKCTRFKD 215

Query: 252 ---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHEL 307
                +        ++         K      G++ + HG R F  T    +       +
Sbjct: 216 GALFRSNSNFCRNHRLTTKSIRTIIKGLLNDLGIDGTTHGFRHFFTTRLIKSYKGELLTV 275

Query: 308 MATYGWKTVDQAETYTKGADRI 329
                 +++   E Y     R 
Sbjct: 276 SKYTRHRSIQMLEVYNDEVIRQ 297


>gi|297564206|ref|YP_003683179.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848655|gb|ADH70673.1| integrase family protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 399

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/369 (11%), Positives = 101/369 (27%), Gaps = 49/369 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           +RT  G+    +    G+        +        + +  S  +     +P     T+  
Sbjct: 26  KRTPPGRWWVRYYDPSGKIKSGGVFQKKPDAEKKRTEIENSLHEGS-YRNPHDAKVTVAE 84

Query: 74  LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128
           +  ++  +     +  ++   + +   + ++ + GD     +  + +   V   +     
Sbjct: 85  MAEKWLITR--TDIKRSTWWQYRAVLDNHVLPRWGDLRLSAVHAEDVAVWVAHLQKPRDE 142

Query: 129 -----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----- 178
                  S        + ++  W V +  +  NP   V  PK                  
Sbjct: 143 GGSNLGASQTRHAHVVLSMVLGWCVPRR-IPFNPAKGVPLPKPSEAEHVYLDHAQVEALA 201

Query: 179 ------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                   ++    +     R     L Y+G+R S++    V  +  +   ++   T   
Sbjct: 202 DASLTLRTKYGQELASARVSRALVLLLAYTGMRWSEAAALRVGRVDLDRRRVRVVVTFAE 261

Query: 233 IT-----------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-- 279
           +                    + L            ++           +  +    +  
Sbjct: 262 VDGRLVEQPPKNGRFRTVPVPRSLVPELRPFVKGRPDDALVFTTRRGAPLRIRNWRNREF 321

Query: 280 ---------AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DR 328
                     G+  + H +R  +A+++  AGA    + A  G KT     + Y     DR
Sbjct: 322 ALAVKVVGLDGMGLTPHKLRHTAASLAIAAGADVKVVQAMLGHKTATMTLDRYGHLFPDR 381

Query: 329 IRLGIKNSR 337
           +        
Sbjct: 382 LDEVADAMD 390


>gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 419

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 91/334 (27%), Gaps = 56/334 (16%)

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106
           Y           +           L  LI++  +       +  +  ++ S+  + +   
Sbjct: 76  YWR-RKTDVSVPQARQVSGADDQALAELIAKLVEVMRLQRKSYKTEQAYCSWIQRYLVFV 134

Query: 107 GDFDYR-KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
              +   +  ++ +      +    S+  Q   ++   F++ + +E   ++  L      
Sbjct: 135 KGEELSGENVSRFVSHLAVEKNVASSTQNQAFNALVFFFRYVLEKEVGDLSQTLRA---I 191

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223
           RK++     T+E++ +  +       P L    +   GLR S++ R  V+ +        
Sbjct: 192 RKSKLPLVLTREEVCKIMAKM--EGVPLLMVRLIYGGGLRHSEAYRMRVKDVDMERMCLT 249

Query: 224 ----------------------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
                                       I+                   L          
Sbjct: 250 VKSGKGDKDREVPLGESLVEELHEHLKKIREIYDEDRSNGVEGCYLPGALENKYPNAGKE 309

Query: 256 FINNDKQKMN-----------------ATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           +        N                 ++  S  +K     AG+ K  + H +R   AT 
Sbjct: 310 WGWFWLFPANVLSNDPRANKIRRHHVLSSYLSGPYKQALRAAGIAKVATIHTLRHSFATH 369

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
             + G     L    G   V+  + YT    + +
Sbjct: 370 VLEDGYDIRTLQELMGHNDVNTTQIYTHVMGKHK 403


>gi|114778571|ref|ZP_01453398.1| integrative genetic element Gsu32, integrase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551160|gb|EAU53720.1| integrative genetic element Gsu32, integrase [Mariprofundus
           ferrooxydans PV-1]
          Length = 391

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 108/364 (29%), Gaps = 33/364 (9%)

Query: 12  TKERTRHGKIIYYFRKGHGRRIRLPYPHEST---------FIPAYMSALTGSTP--KREY 60
            +  T   K   +  K +G++ RL +              +  A +    G+ P   +  
Sbjct: 30  VRVSTTGTKTFVFIYKINGQKKRLSFGTYPAMSLNEAHLLYEEAKLELEKGNDPALIKAK 89

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHI 119
            +   K   T+  LI  Y     +  +   S    E   ++ I+ +  +    +I    +
Sbjct: 90  KSQLEKNEVTIPELIKLYIN--QYAKVRKTSWEEDERQLNKDILPRWKNRKAIEINKSDV 147

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-- 175
            + +++      P  A + L  ++ +F +A  + YV  NPC  +  P  +T   R  T  
Sbjct: 148 HAVLDTLIERGAPIGANRLLAVLKKVFNYAKEKGYVTNNPCDEITPPATETSRDRVLTAN 207

Query: 176 -KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233
             +         +  S  + A +F L +  R  +   A    +  + + I          
Sbjct: 208 EIKTFWHQLDCTNMHSSTKNALKFQLITLQRRKEVALARWNDIHGDTWVIPAGTAKNKKR 267

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM-------NATQFSIWFKAKATKAGV-NKS 285
                  F K L +                             S   K       V + S
Sbjct: 268 HDVHLSQFAKKLLIEAKSYSKDSPFLFPSPCGAGSKHIRPDALSKAVKRNMETLMVQDFS 327

Query: 286 AHGVRKFSATISADAG-ATAHELMATYGWKTV-DQAETYTK--GADRIRLGIKNSR-RIS 340
            H +R+ +AT    +  A    L               Y K       +   +    ++ 
Sbjct: 328 PHDLRRTAATFLTKSKIANRLVLSLMLNHSQGKSVTAVYDKYEYFTEQQKAWEAWGVKLE 387

Query: 341 SVVD 344
            ++ 
Sbjct: 388 EIIA 391


>gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2]
          Length = 190

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 13/191 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K+TP++    L  ++    W   +  + I      E    +   +    + D  +     
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            + S  R  F+ L  +G+R S+     V  +            K      + +    ++ 
Sbjct: 69  CDNSLYRAIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINISKELVEE 128

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L  +   ++         K +        K  A KAG+ K  + H  R   A    + G 
Sbjct: 129 LMNSGFFEK---------KPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGV 179

Query: 303 TAHELMATYGW 313
             +++ A  G 
Sbjct: 180 PLNKIQALLGH 190


>gi|195661224|ref|YP_002117692.1| integrase [Lactobacillus phage Lrm1]
 gi|166200938|gb|ABY84325.1| integrase [Lactobacillus phage Lrm1]
          Length = 375

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/373 (8%), Positives = 93/373 (24%), Gaps = 49/373 (13%)

Query: 16  TRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R  K  Y           + +                 +     +   ++       TL
Sbjct: 6   KRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAAIEVERQHNRGANLDL---NKITL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
                ++ +    G  +  +   +++   Q++   G+  + + I+    +  +       
Sbjct: 63  IDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKR 122

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQF 182
           +  +  +    +R +   AV  + +  N   +        +            ++ +   
Sbjct: 123 AKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYC 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
             F                +G R S+       H+      +   +T             
Sbjct: 183 LEFADYDHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAATK 242

Query: 236 ---------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                +     + L       K+  F +     +++T  +   +
Sbjct: 243 NKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSIRHNMLSSTAINKDLR 302

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIR 330
                  ++   + HG+R    +         + +    G       +  Y     D+ +
Sbjct: 303 TIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQKK 362

Query: 331 LGI-KNSRRISSV 342
             + +  + +S +
Sbjct: 363 EQVSQTLQALSRL 375


>gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 65/262 (24%), Gaps = 12/262 (4%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              I+ +         ++  ++    S    + R   D D   +         +      
Sbjct: 50  AAAIAAFLTHLAVEGQVSAATQNQARSALLFLYRAVLDIDIETLQEIAPARMPKRLP-AV 108

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  +    +R L      +    +     +   +     ++  + E  Q       +G+
Sbjct: 109 LSRAEVRAVLREL--DGSYRLMGQLLYGSGLRLLECVRLRVKDISFEQHQLTI-RDGKGA 165

Query: 191 QPRLAFEF-----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           + R+          L   L+ +                + T             G+  + 
Sbjct: 166 KDRVTMLPDQLVEPLGEHLQRARRLHQDDLERGCGAVYLPTALERKYPNASAEWGWQYVF 225

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
               +  +       +  ++ +      +     +GV    S H  R   AT   + G  
Sbjct: 226 PAERLSVDPRSGVRRRHHVSESGLQKAVRRAVLASGVQKPASCHTFRHSFATHLLENGYD 285

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +    G   V     YT  
Sbjct: 286 IRTVQELLGHADVRTTMIYTHV 307


>gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 480

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 28/232 (12%)

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDM 179
           + + + P++A   L  +R + + A   E +++     ++  K          R  + +++
Sbjct: 239 QKKSYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKLPRGSRQSSGRYLSYQEL 298

Query: 180 QQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------T 226
                    +   ++  +    F  +  +GLR ++     +  +  +   ++        
Sbjct: 299 DHISALTLEQKNKAKALRDNAIFWLMYEAGLRRAEVVSLNIYDIDMDRCQLRVVGKGNKE 358

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW------FKAKATKA 280
           +     I  +L     + LA+                      +                
Sbjct: 359 RYVPFSINSDLYSTMQQWLAVRQQNSLMDKPALFCTINRYQALTHQRLTTQTLNDLCKGL 418

Query: 281 GVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                    S H  R   AT    AG     +    G  ++   + Y +  D
Sbjct: 419 NKKGFNRVVSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRYDRRTD 470


>gi|331648200|ref|ZP_08349290.1| integrase or site-specific recombinase [Escherichia coli M605]
 gi|331043060|gb|EGI15200.1| integrase or site-specific recombinase [Escherichia coli M605]
          Length = 415

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMTEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                           + + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINENGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S +D + 
Sbjct: 375 YARQRAWMLQQWADMIDSWIDGEH 398


>gi|269836439|ref|YP_003318667.1| integrase domain-containing protein SAM domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785702|gb|ACZ37845.1| integrase domain protein SAM domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 327

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 17/278 (6%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           ++    Y + +       N+  S+           G     +I  + I   ++    T S
Sbjct: 50  RYWYRRYLEQSGHPR---NTVNSYSYDLAVFEMLIGSKPIGEIRPRDIALFLDD-SQTRS 105

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSFWSEG 189
           +  + LTS+   FK+ + +  V  +       P+          + +E  +   +  ++G
Sbjct: 106 TRKRRLTSVSGFFKFLIDKAQVLEHDPTESFYPEHIPLKTPRPLFREEQERILAAAEADG 165

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
            +   A   +L  GL   +  +    H+  +                             
Sbjct: 166 PRAHAAVWLMLCLGLSRGEVLQLRADHVDLSDPEQPVVYVFYENPRHRGRERKLAAGAPF 225

Query: 250 IGKET-----FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302
                         +    +     +   +  A  AG+  + +   +R   A   A  GA
Sbjct: 226 TAIYRRLVEEHGPLDYLIPILPQSLNKLVERVALAAGIQRHVTPQTLRDTFAVNRAREGA 285

Query: 303 TAHELMATYGWKTVD----QAETYTKGADRIRLGIKNS 336
              EL+   G             Y K A+   L  +++
Sbjct: 286 DEVELLRLLGLADDSRNRMSVRRYIKLAEPPLLAEQSA 323


>gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3]
 gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3]
          Length = 404

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 83/300 (27%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIRK-- 105
           +T  +E +    +   T         +         +   +  S+     +    I +  
Sbjct: 88  ATDIKELLQGSMQSQITFLERYDRMVEEMKQKVGIEIKGTTLSSYFTIRKHLRAFIEEKF 147

Query: 106 ---------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156
                      +     +    +     S+ H    A+      R+ ++  +    +  +
Sbjct: 148 HTSDIAFGLIEEDFLDCLQRYSVGKLEHSQGHYRKMALAVKKVCRLAYREGLITRQLFAH 207

Query: 157 PCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
             +     KR     R    K     F+ +  E    R  F F  Y+G+   D      +
Sbjct: 208 VTIERGENKRPRALDRASLDKLQSLTFEPYEVELETARDLFLFACYTGVAYCDMVTLSRE 267

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-- 273
           HL  +       K             +KLL+      E               +S++   
Sbjct: 268 HLFTDDEGALWLKF--RRQKTNTLCRVKLLSEAVRLMERHQSEERTTLFAPIAYSVYLAQ 325

Query: 274 -KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            KA   +AG+    SAH  R   AT+   + G     +    G   +   E Y     + 
Sbjct: 326 LKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKK 385


>gi|86137451|ref|ZP_01056028.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
 gi|85825786|gb|EAQ45984.1| site-specific recombinase, phage integrase family protein
           [Roseobacter sp. MED193]
          Length = 367

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 94/343 (27%), Gaps = 22/343 (6%)

Query: 11  VTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
           V +   + G   ++   +R    R +RL      +   A M+A+               K
Sbjct: 31  VLRVGKKFGAKHWHTFVYRGSKRRMVRLGLFPHMSVRDARMAAIQAKANANAPWTPEHIK 90

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
             T+  L  EYRK+      A       +S +D       G      ++  H R      
Sbjct: 91  --TVADLFEEYRKAREPKMRA---WRDVQSAWDVWGEEFLGYLKLTDVSIHHGRELRNHV 145

Query: 127 KHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
               +       +  +R +F WAV +  +  NP   ++     T   R  T E+ Q+   
Sbjct: 146 SKKSTELRGSAVIRYIRPMFSWAVDESLIDENPWAGLKATAIATPRDRVLTNEEWQKVWG 205

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244
              +      A+   L    +  D+  +               +       E        
Sbjct: 206 ATFKD--NLGAYFRFLMLSAQRKDNVASMKWDEIQGNLWTIPAEKFKATKKESAKAHEVP 263

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWF------KAKATKAGVN-KSAHGVRKFSATIS 297
           L    +                T               A KAGV+    H +R+ +AT  
Sbjct: 264 LTPALMEILENQPKRGPFVFGPTGLKQLRLGSREKDRLAKKAGVDDWRLHDLRRTAATRM 323

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338
            +       +    G         Y +    +  R  +    +
Sbjct: 324 TENKIPRFIVERVLGHADRSVTAVYDRANYREEKRQALNELSK 366


>gi|325922092|ref|ZP_08183886.1| Integrase [Xanthomonas gardneri ATCC 19865]
 gi|325547429|gb|EGD18489.1| Integrase [Xanthomonas gardneri ATCC 19865]
          Length = 418

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/378 (11%), Positives = 109/378 (28%), Gaps = 44/378 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +    +  G + + +    +GRR  L      P   +   A    L             
Sbjct: 24  GMYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGPGGVSLALAREKLLDAKKAVAAGRSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++              +  ++   A    +A ++R   +   D+ I+         +I
Sbjct: 84  LEKQREKRRLTAAKNFGDVALKWLADAK---MADSTRAMRKHVVDRDILPVFRSRLLNEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+     K    P++A+     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TANDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDNPANDVAAASIATFVPK 200

Query: 173 PWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226
                  +   +F    S       RLA   +L + +R S+   A    +          
Sbjct: 201 DRALSPAEIRLAFHQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFEHATWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQFSIWFKA 275
           ++        +     + L +                  +            + +     
Sbjct: 261 KQRMKGRNPHVVYLSRQALDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---GADR 328
           +A  AG+     + H +R+  +T+  + G     +      +    +   Y K      R
Sbjct: 321 RAKAAGLPLERFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQR 380

Query: 329 IRLGIKNSRRISSVVDSD 346
             +  + +  + + +D  
Sbjct: 381 RHMLQEWADMVDAWIDGR 398


>gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism]
          Length = 307

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 65/262 (24%), Gaps = 12/262 (4%)

Query: 72  KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130
              I+ +         ++  ++    S    + R   D D   +         +      
Sbjct: 50  AAAIAAFLTHLAVEGQVSAATQNQARSALLFLYRAVLDIDIETLQEIAPARMPKRLP-AV 108

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            S  +    +R L      +    +     +   +     ++  + E  Q       +G+
Sbjct: 109 LSRAEVRAVLREL--DGSYRLMGQLLYGSGLRLLECVRLRVKDISFEQHQLTI-RDGKGA 165

Query: 191 QPRLAFEF-----LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
           + R+          L   L+ +                + T             G+  + 
Sbjct: 166 KDRVTMLPDQLVEPLGEHLQRARRLHQDDLERGCGAVYLPTALERKYPNASAEWGWQYVF 225

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303
               +  +       +  ++ +      +     +GV    S H  R   AT   + G  
Sbjct: 226 PAERLSVDPRSGVRRRHHVSESGLQKAVRRAVLASGVQKPASCHTFRHSFATHLLENGYD 285

Query: 304 AHELMATYGWKTVDQAETYTKG 325
              +    G   V     YT  
Sbjct: 286 IRTVQELLGHADVRTTMIYTHV 307


>gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 309

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 84/291 (28%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + ++K  T      E+      G++   +   +     +I   + D   + +     + 
Sbjct: 2   KAKKRKEQTFHEYFKEWVNLYKVGAIRSITLQKYYVTEQKIQELAPDLRIKDLDRYTYQQ 61

Query: 122 GVESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            + +   T            ++     AV +  ++ NP   +    +     +       
Sbjct: 62  LLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLSQNPTRKIVIKGKTPRLKKAKFLNQF 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           +          +  + +++ +     +GLR S++          +   I   KT      
Sbjct: 122 EVQALLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMV 181

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                      +   +++        +     K+       K ++  +  +   K     
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDPDKPIFVKSRVFNSTINNRLKVLCEN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHVIQE 292


>gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 7/123 (5%)

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  G   +       +                   L++ P        +  ++++N
Sbjct: 46  WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLN 105

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG+  + S H +R   AT    AG     +    G   V     YT
Sbjct: 106 RQ-----LKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYT 160

Query: 324 KGA 326
              
Sbjct: 161 HVL 163


>gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 2/130 (1%)

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              + L    S              +           +   G+  +   +    +     
Sbjct: 34  PFRTHLPRVRSLHENDLRDGFGRVYLPHALASKYPNADREWGWQFVFPSSRRSIDPRSGI 93

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +            K    KAG+    S H +R   AT   ++G     +    G   V
Sbjct: 94  ERRHHAPEDALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADV 153

Query: 317 DQAETYTKGA 326
                YT   
Sbjct: 154 KTTMIYTHVL 163


>gi|327534685|gb|AEA93519.1| phage integrase family site-specific recombinase [Enterococcus
           faecalis OG1RF]
          Length = 382

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 97/363 (26%), Gaps = 52/363 (14%)

Query: 16  TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R  K   +   +K  G+    P     T   A  +     +   +        P     
Sbjct: 5   KRGTKWRAFISVKKEGGKYRNKPLGSFDTKFEAVKAVEYAQSVASKDRRMAFTVP--FYE 62

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131
               + +     + +  ++  +      I +  GD     +T       +    + ++P+
Sbjct: 63  YFEWFFQKYKKEACSKKTQGHYRHTKRYIKKYLGDTPLSDLTNDKYVELLNQFSKDYSPA 122

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS----------VERPKRKTEGIRPWTKEDMQQ 181
           +  +F T MR   K A    ++ I                E+P  +        K+ +Q 
Sbjct: 123 TLEKFHTHMRACVKQAFALGHIPIEFTSGSSLRGLGDKSKEKPIYQKYIDDTQYKKVLQY 182

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------------------F 222
                 + S    A  F L +G R S+     +  L                        
Sbjct: 183 VVQHRDKESSIYYAIIFSLLTGCRFSEIVGITIDDLNFEQGFVDINKTYDYMNPPSNSSD 242

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW---------- 272
            +  +   +   VE+P    +LL      ++     +  +      F  W          
Sbjct: 243 WLPCKNKNSYRKVEMPQNLAELLKEFWQYQQEKCQFHQIKNPRKQIFFDWQEGVCDNRKA 302

Query: 273 ---FKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
               K      G+      S H  R    +     G +  E+    G K  +  +TY   
Sbjct: 303 NIEIKKILVTCGITDKPKFSMHCCRHTFVSFLIYQGYSVEEVALIVGDKPEEIRKTYYHV 362

Query: 326 ADR 328
              
Sbjct: 363 FQE 365


>gi|170767419|ref|ZP_02901872.1| prophage integrase [Escherichia albertii TW07627]
 gi|170123753|gb|EDS92684.1| prophage integrase [Escherichia albertii TW07627]
          Length = 414

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 104/351 (29%), Gaps = 36/351 (10%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRRIRLPYP--------HESTFIPAYMSALTG---- 53
             +       G  ++   Y+R  + +R  +                   Y + +      
Sbjct: 29  GGLFLVVKPSGSKLWRFNYYRPSNKKRTIISLGSLDEVSLADARKRRSEYRTLIAAGTDP 88

Query: 54  -STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
               +++     R++  T + + + + +     +LA N+           +    G+   
Sbjct: 89  QEYERQKREAEARRQGNTFENVAASWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +T +     +   K   +  +  + L  +  +  +A     + IN   +V +      
Sbjct: 149 DTLTARRFVEILTPIKARGNLETLKRVLQRINEVMDYAANSGIIDINTAANVRKAFPTPT 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T             +  S   Q +L  E+ L +  R +++  A  + +     + 
Sbjct: 209 KKHMPTIRPEQLPQLMNDLTIASIERQTKLLIEWQLLTATRPAEASAARWEEINLEAATW 268

Query: 225 K----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKA 275
                  K      + L    M +L                + N  + M++   +   + 
Sbjct: 269 TIPAGRMKMRRDHVIPLCAQAMAVLEAMKPISARREHVFPSLKNPVKPMSSQTANAALRR 328

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
               AGV  S HG+R   +T + + G     + A       ++    Y + 
Sbjct: 329 MGY-AGVLVS-HGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11]
          Length = 303

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 73/291 (25%), Gaps = 48/291 (16%)

Query: 83  HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMR 141
               L++ +  S+ ++  + I         ++  +H+ + +         SA     S+ 
Sbjct: 13  RTRHLSIRTEESYLAWIKRYILFHRKRHPSELGAQHLSAFLSHPAVKRHVSASTQNQSLS 72

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
            +         V ++    V R +R       +T+ ++    +   + +    +  +   
Sbjct: 73  AILFLYREVLGVELDWITDVARAQRPKRLPVAFTRAEVNAVLARLRDTTWLMASLLYGSG 132

Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK------------------ 243
             L      R       N+   ++  K        LP    +                  
Sbjct: 133 LRLMECVRLRVKDVDFGNHQIIVRDGKGAKDRVTMLPAPVEESLKRHLTRVKALHEQDVR 192

Query: 244 ----------LLAMTPIGKETFFINNDKQKMNATQ-----------------FSIWFKAK 276
                      L       E  ++       +                         KA 
Sbjct: 193 DGFGGVYLPFALERKYKHAEREWMWQYVFPASRRSRDPRSGREQRHHVAETVLQRAVKAA 252

Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             +AG+ K  S H  R   AT    AG     +    G   +     YT  
Sbjct: 253 VRQAGIEKPGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303


>gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
 gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae
           RM3277]
          Length = 354

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----- 245
           + +L  + ++++G+R S++     + +  +      +  G      +     +L+     
Sbjct: 191 RNKLIIKIIIFTGIRVSEALNLKRKDIAEDGELYVIRIRGKGNKYRVVMIKRRLIEAHLD 250

Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
                    +   FIN    ++     S   +    KAG+ K    AH +R   AT+   
Sbjct: 251 AIAINYINKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYK 310

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +++++L  + +  +S 
Sbjct: 311 KQKDLVLVQEALGHASLNTSRIYTHFDSEKLKLAAQVAEELSE 353


>gi|237803677|ref|ZP_04591262.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025659|gb|EGI05715.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 367

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 110/361 (30%), Gaps = 45/361 (12%)

Query: 1   MTPSLR------LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG 53
           M P  R      LPP + ++   R+G   Y +R     R+      +        +A   
Sbjct: 1   MVPRPRKAGSKDLPPNLYRKTDKRNGHTYYTYRDPVTGRM-FGLGKDKAAAIMEAAAANH 59

Query: 54  STPKREYINSPRKKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
           +   +  +     +P      T    + EY        L+ ++  S +S    I    G+
Sbjct: 60  ADVLKPTLAQRIAEPVAVDDRTFADWLGEYDLIYTERGLSAHTTRSIKSRLKVINNAFGE 119

Query: 109 FDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              R I T  I + + +      +  +    + +R +F  A+   +  +NP  + +  + 
Sbjct: 120 KYMRSIRTMDIATFLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARS 179

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           K +  R     ++ +     ++    + A E  L +G R  D      +   +    +  
Sbjct: 180 KVKRGRL--SLELWKAAHAATDRPWLKRAMELALLTGQRRDDIGSMLFKDEHDGFLHVIQ 237

Query: 227 QKTGTIITV----------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
            KTG  + +                        L         T  +      +     +
Sbjct: 238 SKTGARLRISTSLRLEAIDLDLSNVIKMCRDRVLSKHLVHHARTVAVAKAGSPVKLNTLT 297

Query: 271 IWFKAKATK----AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           + F     K     G++      S H +R  +A + A  G          G +     E 
Sbjct: 298 LAFAEARDKGAAALGIDLGTSPPSFHEMRSLAARLHALEGRDP---QKLLGHRNAAMTEM 354

Query: 322 Y 322
           Y
Sbjct: 355 Y 355


>gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 2/130 (1%)

Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
              + L    S              +           +   G+  +   +    +     
Sbjct: 34  PFRTHLPRVRSLHEDDLRDGFGRVYLPHALASKYPNADREWGWQFVFPSSRRSIDPRSGI 93

Query: 259 NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
             +            K    KAG+    S H +R   AT   ++G     +    G   V
Sbjct: 94  ERRHHAPEDALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADV 153

Query: 317 DQAETYTKGA 326
                YT   
Sbjct: 154 KTTMIYTHVL 163


>gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
 gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185]
          Length = 267

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 79/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  +++ +          P +
Sbjct: 2   VTKFKNHLAKTNLARNTVTSYVWTVQYFLNHYG-----EVNKRNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 57  VNLRLQGINQYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKADGYDE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H++     + ++           +      K L    
Sbjct: 114 YFVVWFMAATGARVSELLHIKAEHIKVGYLDLYSKGGKIRRLYIPKNLRTEAEKWLKNKG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKDVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium]
          Length = 158

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+    + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFRRAFKRAVEQAGIAKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|331091157|ref|ZP_08339999.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405379|gb|EGG84915.1| hypothetical protein HMPREF9477_00642 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 420

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/386 (13%), Positives = 106/386 (27%), Gaps = 60/386 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK  + +        +LP   +       +    G          P  K  T+  L+  
Sbjct: 31  NGKAHFVYSWRLEPTDKLPVGRKPCLSLRELEKQIGYDLDNRL--DPVGKNITVNELVDR 88

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTK----HIRSGVESRKHTPS 131
           Y  +     +  N+++++ ++   I++    GD    ++ T      +    +      S
Sbjct: 89  YLATK--TGVKYNTQMNY-NFVKNILKAHPFGDTKISRVKTSDAKLFLIKLQQEDGRGYS 145

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S       +R  F+ AV    +  NP            +      TKE M +F  F  + 
Sbjct: 146 SVKTIRGVLRPAFQMAVDDGVLNKNPFGFQLAGVVVNDSVTREAITKEQMNKFLKFVHDD 205

Query: 190 SQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
           +     +E +    ++G+R S+ C   +  +      +                      
Sbjct: 206 NVYCKYYEVIYILFHTGMRISEFCGLTISDIDLENNIVNIDHQLQRTSDMKYILDTTKTD 265

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                            ++       +   M        F++ +     A  +       
Sbjct: 266 AGTRKLPITQDVADCFRSILEDRKKPRYEKMIKGHTGFLFLDKNGNPEVAMHWQHRLNHM 325

Query: 277 ATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---- 324
             +          N + H  R    +  A +G     L    G   +     TYT     
Sbjct: 326 VKRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNTYTHWGLE 385

Query: 325 -GADRIRLGIKNSR-RISSVVDSDDP 348
             AD ++      + R       + P
Sbjct: 386 DAADELKKMEDVEKVRREMEKGQEKP 411


>gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik]
 gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik]
          Length = 377

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 117/382 (30%), Gaps = 50/382 (13%)

Query: 1   MTPSLR--LPPFVTKERTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMS-------A 50
           M P        +        G+I   Y     G+R   P  +++                
Sbjct: 1   MPPKKTAARRGWGKIRTIGSGRIQASYVSSVDGQRHYAPTTYDNRMDAEAWLTSERRLIE 60

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109
           +   TP  E          T++    ++ +      LA  +R  ++++   +I    GD 
Sbjct: 61  MEVWTPPAERAKKKAVSAITVEEYAKKWLEE---RDLAEGTRELYKTHARKRIYPVLGDT 117

Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              ++    +R+          +A +     +R +   AV  + +  NPC      ++  
Sbjct: 118 AVSEMNPAIVRAWWAGMGKDYPTARRHAYNVLRAVMNTAVEDKLLTENPC---RIEQKTA 174

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                      +            R+A   L ++ LR  +      + + ++  ++  + 
Sbjct: 175 AERDVEALTPEELDIVAGEVFEHYRIAVYILAWTSLRFGELIELRRKDIDDDGETMLFRV 234

Query: 229 TG------------------TIITVELPDGFMKLLAMTPIGKETFFI--------NNDKQ 262
                               +   V +P    +++      +                KQ
Sbjct: 235 RRGAARVGEKIVVGNTKTVRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQ 294

Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++ + F+   K    K G  +   H +R   AT +A AGAT  ELM   G  T   A  
Sbjct: 295 RLSKSAFTRSLKKGYRKIGRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMK 354

Query: 322 Y-----TKGADRIRLGIKNSRR 338
           Y      +  +  +     ++R
Sbjct: 355 YQMASEARDVEIAKRMSDLAKR 376


>gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
            G+  +       ++       +  ++              AGV    S H  R   AT 
Sbjct: 74  WGWQWVFPAEKRSRDPRSEVVRRHHVHEKNLQNAVSRAVRVAGVLKPASCHSFRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G K V     YT   
Sbjct: 134 LLEAGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
 gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3]
          Length = 118

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
             + H  R   AT+    GA  + +    G   V   + Y K  D  +  ++    + SV
Sbjct: 59  PITFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKIVDSKK--VEAVNLVDSV 116

Query: 343 VD 344
            D
Sbjct: 117 FD 118


>gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
 gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           D22]
 gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp.
           3_1_23]
          Length = 267

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 78/259 (30%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           +++++      +LA N+  S+       +   G     ++  K++ +          P +
Sbjct: 2   VTKFKNHLVKTNLAKNTVTSYVWTVQYFLNHYG-----EVNKKNLLAYKGYLVENFKPQT 56

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L  +    ++  +++       +  +           +     Q     + E    
Sbjct: 57  VNLRLQGINKYLEFTKQEKLKVKFVKVQQKNFLENVISDADYKFLKAQLKADGYEE---W 113

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                F+  +G R S+      +H+      + ++           +      K L    
Sbjct: 114 YFIVWFMTATGARVSELLHIKAEHINVGYLDLYSKGGKVRRLYIPKNLRTEAEKWLKNQG 173

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   Q++     +   K  A K G+NK     H  R   A    D       
Sbjct: 174 LTSGYIFLNRFGQRITTRGIASQLKHFAEKYGMNKEVVYPHSFRHRFAKNFLDRFNDLAL 233

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 234 LADLMGHESIETTRIYLRR 252


>gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
 gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221]
          Length = 448

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 85/307 (27%), Gaps = 53/307 (17%)

Query: 79  RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-L 137
             +     +++ +  S+  ++   +R+    D   +T   ++  ++        A     
Sbjct: 135 LATMRRLGMSLRTERSYLGHYRNFVRQQSVQDGCSMTASAVKCYLDHMAMDRGVASSTQK 194

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197
            ++  L   A +   V +       R K         ++ +++         S+  L  E
Sbjct: 195 QALNALVFVAKQVFMVDLGEIGEYVRAKAGKRIPVVLSQAELRALFEQM--ESEKLLMAE 252

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------------------------T 226
               SGLR S+  R  +Q L  +   I                                 
Sbjct: 253 VQYASGLRVSELVRLRIQDLDFSRGQIVIRSGKGNKDRIVPLSEKAAPGLRTHLELVETF 312

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-----------------TQF 269
            +     T        + LA         +                             +
Sbjct: 313 FREDQERTDLAGVYLPEALARRHSNAGRDWRWQWVWPSRKVSVDPRSGKLRRHHVLDRAY 372

Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
               +  A  AG+ K  ++H +R   AT   + G     +    G + ++  +TY     
Sbjct: 373 QRTIREAALAAGITKRVTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQ 432

Query: 328 RIRLGIK 334
           ++  G++
Sbjct: 433 KLGAGVE 439


>gi|117624733|ref|YP_853646.1| integrase-like protein [Escherichia coli APEC O1]
 gi|115513857|gb|ABJ01932.1| integrase-like protein [Escherichia coli APEC O1]
          Length = 418

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 114/384 (29%), Gaps = 43/384 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST--- 55
            +     +       G + + +    +GRR  L          +   A    +       
Sbjct: 18  KVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLK 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGD 108
                   +       +   T       Y K      LA ++R   ++  D+ I+   G+
Sbjct: 78  AGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGN 134

Query: 109 FDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +ITT  +R   +        ++A+Q    +  +++ A  + +   NP   ++    
Sbjct: 135 KMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R  T    +    F +          ++A + +L + +R  +   A    +    
Sbjct: 195 AIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKK 254

Query: 222 FSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW 272
           ++        K      + LP     +L    +             N ++ ++    +  
Sbjct: 255 WTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSL 314

Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324
                     +       + H +R+ ++T+  +AG  +  +      +       Y K  
Sbjct: 315 IDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAE 374

Query: 325 -GADRIRLGIKNSRRISSVVDSDD 347
               R  +  + +  I S ++ + 
Sbjct: 375 YARQRAYMLQQWADMIDSWINGEH 398


>gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149]
 gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149]
          Length = 153

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
           ++ +  F    +  + + G+  + + H  R  +AT+  + G     + A  G   +   +
Sbjct: 69  RLRSATFRKRLRTLSKRLGIEPHLTPHRFRHSAATLLIEEGIDIRIVQALLGHANLKTTK 128

Query: 321 TYTKGADRI-RLGIKNSRRISSVVD 344
            Y + ++   R  ++    +  +  
Sbjct: 129 IYVRVSNHALRRALERVDILGELRP 153


>gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217]
 gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217]
          Length = 195

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 11/151 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMT 248
           + RL    L   GLRC + C   ++ L     +  I+  K      V L    ++ L   
Sbjct: 31  KHRLVLALLYGCGLRCFELCNLQLKDLDFDRMMLHIRQGKGRKDRYVPLSKMQIRGLQTY 90

Query: 249 PIGKETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299
              ++                 ++              +G+ K  + H +R   AT   +
Sbjct: 91  LRAEQPSIWCFTGNNSEGKAVPLSTQGVRWIVSEARKHSGIRKQVTTHSLRHSYATHLLE 150

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330
            G     +    G   +    TY   A   R
Sbjct: 151 MGLDIMSVKDLLGHADIQTTLTYLHVAQLGR 181


>gi|283471201|emb|CAQ50412.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp.
           aureus ST398]
 gi|329734825|gb|EGG71130.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU028]
          Length = 687

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 78/328 (23%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 219 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 278

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E           + T +   + L ++R      + Q Y        +       
Sbjct: 279 HIEAYIEFLFEYAANKHLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 337

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 338 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 397

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 398 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 457

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 458 KRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 517

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 518 LLAHSSPEMTLRYAKLLDDTKRKAFESV 545


>gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium]
 gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium]
 gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium]
 gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AGV    + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEEAGVAKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   + +  +       +     +      K     AG+ K  S H +R   AT 
Sbjct: 74  WEWFWVFPSSNLSVDPRANAVRRHHAGESAVQKAVKVATGHAGIEKKVSCHVLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++G     +    G   V   E YT   
Sbjct: 134 LLESGRDIRTVQELLGHSDVKTTEIYTHVL 163


>gi|319400740|gb|EFV88962.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           FRI909]
          Length = 370

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/322 (8%), Positives = 82/322 (25%), Gaps = 70/322 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK------- 127
            Y K       ++N++ ++                  ++++  +    +   K       
Sbjct: 29  RYLKYLDSVKKSLNTKKTYAYALKNFFVYLESKKICYKEVSFDNFVDFIRWMKTPFEYEN 88

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    + ++  + +   
Sbjct: 89  VLSYHRKGKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKSFMHH 148

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +++  +                             + +   + L  +GLR  +   
Sbjct: 149 INKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNIRDKFLIQLLYETGLRIGEVLS 208

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 209 LRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 268

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + MN +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 269 SDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 328

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   +      Y    + 
Sbjct: 329 QERLGHSNIQTTINLYVHPTEE 350


>gi|167771429|ref|ZP_02443482.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
 gi|167666069|gb|EDS10199.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM
           17241]
          Length = 395

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 100/347 (28%), Gaps = 49/347 (14%)

Query: 22  IYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-KPTTLKWLI 75
            +Y+RK        +  ++          A   A   +   +      +  +       +
Sbjct: 15  RWYYRKRELVGFTVKYGKVSGFSSKEEACAARDASDAAFQAQLTQLYGKHPEDVLFVDFM 74

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSA 133
             +    ++ +++  ++  ++      I +  D       ++TK I   +       ++A
Sbjct: 75  IFWVYQVYFPTVSYATQSIYDYVVHSYILQISDSAMKLLSVSTKIINDMLVRASKRSNTA 134

Query: 134 I-QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
             +    +  +F  A+ Q  +A NP  + +R +R    I+  +K+++  F +        
Sbjct: 135 AEKVREVLNSVFNGAIAQGLLAENPVENSKRYRRDIPDIKLLSKDELHLFLNTAKNYEIC 194

Query: 193 RLAFEFLLYSGLRCSDSCR--------------------AGVQHLQNNIFSIKTQKTGT- 231
            L     L+ GLR  +                            +     +         
Sbjct: 195 FLEILLALFGGLRRGEIAGLHISDFDFERETVFIQRQLVWEYDWVDGKRSNGHWVVKPPK 254

Query: 232 ------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                ++  +   +              N        +  +   
Sbjct: 255 TESGIRILTLPSVIFSVLRRRIQRIEEDKRKYGNRYRDSGYISCNEMGYPREYSFLTAKM 314

Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           K    + G++  SAH +R   AT   + G + H L A  G K+ +  
Sbjct: 315 KKICLQLGLSVISAHDLRHMFATFLVEKGESIHYLSALMGHKSEETT 361


>gi|161617508|ref|YP_001591473.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366872|gb|ABX70640.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 360

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 85/260 (32%), Gaps = 22/260 (8%)

Query: 103 IRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQE 151
                     +IT+  I    + R           ++P+S    L  +  L+    +   
Sbjct: 29  RSALARRYMHEITSVDIAEYRDQRLSEVSGKTGRTNSPASVRLELALLSALYNLARIEWG 88

Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF-LLYSGLRCSDSC 210
               NP   V +P       R  T ++ ++     ++ +    A     L + +R  +  
Sbjct: 89  TCTHNPVEHVRKPPASKGRTRRLTSQEERKIGRALAKRNIELAAIFHLALETAMRQGEIL 148

Query: 211 RAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
               +++     I  +   K G++  V L     K+L            +       +  
Sbjct: 149 SLRWENIDLHIGIAHLPLTKNGSVRDVPLSFKARKVLREYSGPLSGPVFSY-----TSNG 203

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-G 325
           F   ++      G+ +   H +R  + +   + G     E+ A  G K++   + YT   
Sbjct: 204 FKSAWREVIQALGIVDLHFHDLRHEAISRLFELGTLNVMEIAAISGHKSLTMLKRYTHLR 263

Query: 326 ADRIRLGIKNSRRISSVVDS 345
           A ++   +   +R +  + +
Sbjct: 264 ATQLVSKLDIRKRQAQKLAA 283


>gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047]
          Length = 144

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                     A  AG+    + H +R   AT   +AG     +    G   V     YT 
Sbjct: 68  KPVQRAIANGAKAAGIMKRCTCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTH 127

Query: 325 GADR 328
             ++
Sbjct: 128 VLNK 131


>gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57]
          Length = 355

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++  +            N     + P            + + + +      ++ R
Sbjct: 147 NITLKNISGV------------NQSAGNKLPTHLNNEELEKFLDGIDKIEMSAKVRTRNR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPI 250
           L  + ++++G+R +++ +  ++               K      V L    ++ L    +
Sbjct: 195 LLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWL 254

Query: 251 GKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +   +         N     +         +     AG+ +    AH +R   AT+   
Sbjct: 255 MERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQ 314

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +    G  +++ +  YT   D+ RL    
Sbjct: 315 KRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAA 349


>gi|301307919|ref|ZP_07213875.1| transposase [Bacteroides sp. 20_3]
 gi|300834262|gb|EFK64876.1| transposase [Bacteroides sp. 20_3]
          Length = 402

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 100/333 (30%), Gaps = 45/333 (13%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSP-------RKKPTTLKWLISEY------------- 78
                  +Y++AL     K  +              P T+  +I  Y             
Sbjct: 56  GSGEGRKSYLAALKNQIDKDLFRIKKCINRLNQEDTPFTVDRIIELYTAPEGNCTFLLYG 115

Query: 79  ---RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
                        V +  ++++  +   +     GD    ++ +  + +     K T   
Sbjct: 116 KELLVELRQIG-KVRTAGTYQNALNSFERFRGHRGDIPLDELDSNQMITYESWLKGTGVC 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+++  ++ ++R ++  AV +  V                  R  +   +++ +      
Sbjct: 175 PNTSSYYMRNLRAIYNRAVSEGLVVQRNPFKHVYTGIDKTKKRAVSLSVIRRIRDLDLNK 234

Query: 190 SQ---PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                 R  F F  Y+ G+   D      + LQN I + + +KT   + ++      +L+
Sbjct: 235 KSLIFARDIFMFSFYTRGMSFVDMAFLKKKDLQNGILTYRRKKTDQQLFIKWEKPMQELI 294

Query: 246 AMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294
                        I +        + +  A + +   K    +   G+  + +  R   A
Sbjct: 295 DKYNTSETSYLLPIIQNNGVDEWHQYQNEAHRINRNLKHIGKQIGLGIPLTTYVARHAWA 354

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +I+     +   +    G  +      Y    D
Sbjct: 355 SIAQSKNVSLPVISEALGHDSEQTTRIYLASLD 387


>gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301]
          Length = 367

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 83/314 (26%), Gaps = 27/314 (8%)

Query: 42  TFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLIS----EYRKSAHWGSLAVNSR 92
                Y   +       +   R+       K  TL  L      EYRK   +    + + 
Sbjct: 35  EVNRRYQELMQSDGYVTAAKLRDAYLGIGVKQETLLKLFEQHNVEYRKKVGFSR-EIATW 93

Query: 93  ISFESYFDQIIRKSG------DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRV 142
             +     ++           D   +++    I          +K   ++   ++  ++ 
Sbjct: 94  KKYCCVCKRVREFLAHTYHREDIPLKELNLTFINDFEYFLRTEKKCRTNTVWGYMIVLKH 153

Query: 143 LFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           +   A     +  NP               +     + +  +K+     ++ R  F F +
Sbjct: 154 IVAIARNDGRLPFNPFSGYINSPESVDRGYLSQEEIKAVMNYKTANKAHARIRDLFVFSI 213

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260
           ++GL  +D       +LQ          T    T       +  +    I K      ++
Sbjct: 214 FTGLAYADVKGLTTDNLQTMFDGNLWIITRRKKTNTESRIRLLDIPKRIIEKYADQRLDN 273

Query: 261 KQKMNATQFSI--WFKAKATKAGVN--KSAHGVRKFSATIS-ADAGATAHELMATYGWKT 315
                          +    + G+    + H  R   AT      G     +    G   
Sbjct: 274 HVFYMPCNCHCNDILREIGKQCGIKNKLTFHLARHTFATTITLSQGMPIETVSRLLGHTN 333

Query: 316 VDQAETYTKGADRI 329
           +   + Y K  +  
Sbjct: 334 IKTTQIYAKITNEK 347


>gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 689

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 78/328 (23%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 221 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 280

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E           + T +   + L ++R      + Q Y        +       
Sbjct: 281 HIEAYIEFLFEYAANKHLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 339

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 340 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 399

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 400 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 459

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 460 KRKGMPFTQHMVRAHLNHLSKIKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 519

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 520 LLAHSSPEMTLRYAKLLDDTKRKAFESV 547


>gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   T IG +       +  +N T      K     AG+ K  + H +R   AT 
Sbjct: 74  WAWQWVWPSTHIGIDPADGRRKRHHLNETTMQRVMKEAVRTAGLTKPATCHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V   + YT   
Sbjct: 134 LLENGYDIRTVQELLGHKDVSTTQIYTHVL 163


>gi|227113370|ref|ZP_03827026.1| Tyrosine recombinase xerD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 348

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 103/340 (30%), Gaps = 30/340 (8%)

Query: 17  RHGKIIYY-FRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           R GK  +       G RIR      E      Y   L       +     +    T + L
Sbjct: 5   RRGKTYWVDISTPDGERIRRSAGTTERAKAQEYHDKLKH--EVWQVARIGKIADRTFEEL 62

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKH 128
           I    + A   S   N +  +  Y+   +          I+ + I +        ++ K 
Sbjct: 63  IILALRDAEDQSCFEN-KQIYARYW---LTVFDGRIISSISGEEITNKLPTHSTAKNCKL 118

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + ++  ++   +      AV+  ++   P  S++R   + +    W ++   +       
Sbjct: 119 SNATRNRYRAFIIRALSLAVKSGWIRNMPYTSMQR---EPKVRVRWIEKSQARALIESLR 175

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKL 244
               +    F L +G R  +        +  +                  + L D  +K+
Sbjct: 176 LDWMKRVVSFALLTGARKGEIFSLKWDSVNLSRRIAIVTADNAKSGRARPLPLNDDAVKI 235

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303
           +       +  F  N  + +        F      +G+ +   H +R   A+     G  
Sbjct: 236 INACGRDSDYVFSANGVRIVEIN--RTDFCNALRISGIADFRFHDLRHTWASWHVQNGTP 293

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343
              L    GW+ ++    Y        L  ++ R+ S +V
Sbjct: 294 LMTLKELGGWEKLEMVNKYAH------LSTEHLRQFSGIV 327


>gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 329

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 76/304 (25%), Gaps = 37/304 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHI 119
             TL+   ++         ++  +  S+      +I     ++G       +  +    I
Sbjct: 5   APTLQAFFTDRLT--KQRQVSPRTIASYRDSLRLLIGFAQERTGKTPSRLEWTDLDADLI 62

Query: 120 RSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
            S ++  +H    +  +    LT++R LF +A  +          V     K    +  T
Sbjct: 63  ASFLDHLEHVRHNSARTRNLRLTAIRSLFGFAALRHPEHAEVIQQVLAIPAKRFDKQLIT 122

Query: 176 KEDMQQFK-------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                + +       +   EG + R        +GLR ++        +     S     
Sbjct: 123 FLTATEIEALIDAPDTDRWEGRRDRALLLLASQTGLRVAEMTGLNCSDITFGDGSSIRCM 182

Query: 229 T--GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
                   V L      +L +    +               + S     +  +       
Sbjct: 183 GKGRKRRAVPLTTTTQAVLRVWLTERGDVPDQPLFPTRTGRRLSTDTVERLVRLHAATAA 242

Query: 283 ---------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLG 332
                        H +R   A     AG     +    G   +     Y        +  
Sbjct: 243 RTCPTIRPAELHPHVLRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLHTDLTIKQRA 302

Query: 333 IKNS 336
           +   
Sbjct: 303 LDAM 306


>gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6]
          Length = 190

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 13/191 (6%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            ++P++    L  ++    W V +  + +      E    K   +    + +  +     
Sbjct: 9   MNSPATQRNKLVVVKNYLNWKVDRGMMNVENRFWNEAEPPKHHVLPKAIEIEEVRKIIEI 68

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244
            +    +  F+ L  +G+R S+      + +   ++       K      + +    ++ 
Sbjct: 69  CDHPMYKAIFKILANTGMRISELINLEKEDISLNDSARIRIKGKGNKERIINVTKDLIEE 128

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302
           L  +   ++         K +        +  A KAG+ K  + H  R   A    + G 
Sbjct: 129 LINSGFFEK---------KPSVRSIQRAVRRYARKAGIKKKVTPHVFRHSFAVALIERGV 179

Query: 303 TAHELMATYGW 313
             +++ A  G 
Sbjct: 180 PLNKIQALLGH 190


>gi|284048509|ref|YP_003398848.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
 gi|283952730|gb|ADB47533.1| integrase family protein [Acidaminococcus fermentans DSM 20731]
          Length = 309

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 86/283 (30%), Gaps = 26/283 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
            +   + +      G++   +   ++   S+ ++++ +    D  ++  + + +      
Sbjct: 11  FREYYAHWVTMYKEGAVRPVTLAKYQMTQSWLERLLPELRVQDLTRLAYQQLINDYAQYH 70

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF 185
              ++       ++     AV +  +  +P     ++    + + I+   +  +      
Sbjct: 71  ERQTTMDFHHQ-LKGAILDAVDEGLIQRDPTRKVIIKGMAPREKKIKYLNQFQLHTLLKH 129

Query: 186 WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------------ 231
              G +    +  LL   +G+R S++             ++   KT              
Sbjct: 130 LDLGERVNWDWFILLVAKTGMRFSEALALTPDDFDFAHQTVCINKTWNYKGNGGFLPTKN 189

Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286
                         M+   +T    +       K K+  +  +   +    +  +   S 
Sbjct: 190 RSSIRKIQIDWKTVMQFAVLTDSLPKEVPFFIHKGKLYNSTVNNILERHCKRLEIPIISI 249

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
           HG+R   A++   AG +   +    G  ++   +  Y      
Sbjct: 250 HGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQE 292


>gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium]
 gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 2/129 (1%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L++ L                   +            +   +  +     +  +      
Sbjct: 35  LWTHLARVKLLHQKDAANGYGAVYVPNALDRKYPAAPMEWMWQYVFPAATLSVDPVTRQV 94

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  ++ +      +  +  +G+NK    H +R   AT   ++G+    +    G K V 
Sbjct: 95  RRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELLGHKHVQ 154

Query: 318 QAETYTKGA 326
               YT   
Sbjct: 155 TTMIYTHVL 163


>gi|325474567|gb|EGC77753.1| phage integrase family Site-specific recombinase [Treponema
           denticola F0402]
          Length = 269

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 78/271 (28%), Gaps = 20/271 (7%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
             EY K     +L+ N+  S+                  ++ +++ +          P +
Sbjct: 7   FEEYLK---KSNLSQNTLTSYLWTVKYYTEHY-----DSVSKENLLAYKGYLIEFFKPKT 58

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               +  +    ++  + +       +  +           +        +    E    
Sbjct: 59  VNLRIQGINKYLQFIHKDQLQLKFVKVQQKNFLENVISNADYQFLKSSLKRDGNRE---W 115

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TP 249
                FL  +G R S+  +  V+H++   F + ++               + L       
Sbjct: 116 YFVVWFLAATGARVSELIQIKVEHVKLGYFDLYSKGGKLRRLYIPKILKEEALQWLESIR 175

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
                 F+N  ++ +     +   K  A K G+++     H  R   A    +       
Sbjct: 176 RESGYLFLNRFEKHITTRGIAQQLKNYARKYGISEKVVYPHSFRHRYAKNFLEKFNDISL 235

Query: 307 LMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336
           L    G ++++    Y +  A   R  + + 
Sbjct: 236 LADLMGHESIETTRIYLRRTASEQRELVDSI 266


>gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 301

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 73/290 (25%), Gaps = 32/290 (11%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           +  +         L+ N+  S+            D     ITT  I+S ++SR   P + 
Sbjct: 1   METFLNDIQAEQGLSGNTITSYRCDLRTAAGVV-DKPLETITTLDIQSFLDSRNEQPGTT 59

Query: 134 IQFLTSMRVLFKWAVRQEYV---------AINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
            + + S+   F+WAV + Y                   +P       R          + 
Sbjct: 60  NRRIASLGRFFRWAVARGYCLYNPLEQIAGRYHTEHRPQPIVSEAERRALDTAIAACSQP 119

Query: 185 FWSEGSQPRLAFEF-----LLYSG---LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +    +  R           L  G   L               N   +         ++ 
Sbjct: 120 YRLIFTLLREIGVRTDEVLNLNVGDVILETGREVLLVQDTKSGNKRMVALTPDAMPRSLR 179

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSA 286
               +M+ L   P      F ++  ++ +       +      A +            + 
Sbjct: 180 GLRSWMRDLGPNPAPDAPLFCSSRGKRASYDTLHRRWVQVCRAAHLIDLVEGKEQPRYTL 239

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           H +R  +A     A      +    G +       Y       +     +
Sbjct: 240 HHLRHTAAAELI-AFYPEQVVRRILGHRDPRSTRRYADIV--RKGAHNAA 286


>gi|256964544|ref|ZP_05568715.1| integrase [Enterococcus faecalis HIP11704]
 gi|256955040|gb|EEU71672.1| integrase [Enterococcus faecalis HIP11704]
          Length = 370

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 91/349 (26%), Gaps = 47/349 (13%)

Query: 23  YYFRKG---HGRRIRLPYPHESTFIPAYMSALTGST-PKREYINSPRKKPTTLKWLISEY 78
           Y  RK    +G +         T   A            R        +  T+     +Y
Sbjct: 2   YRIRKSVTINGVKTPFDESKFKTLTAAKARLKEIDDLALRNETGILLNRKLTVNDYWEKY 61

Query: 79  RKSAHWGSL-AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAI 134
                   + + ++R+  +S +   I  K G+    ++        +          S  
Sbjct: 62  ANKKVVQKVWSKDTRLGNDSLYKNHIKPKYGNLPLIQLNRNDYELYIVELLKKLRKDSVR 121

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKS-FWSEGSQP 192
               +   +   AV    +  N    V     +     +  + ++   +        ++ 
Sbjct: 122 SIHIAFMAMLNDAVYCGVIERNRLQRVYIGDAEKPARNKHLSLDEYWSWMDTAKRILTKY 181

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------------G 230
             +  +L   G+R  + C    + +  N  +                             
Sbjct: 182 EYSCVYLCIYGMRRGEVCGITPKVISQNELTGNLMIHLEDSRTNATSKDGQSKGGVKTAE 241

Query: 231 TIITVELPDGFMKLLAMT---------------PIGKETFFINNDKQKMNATQFSIWFKA 275
           +   + L +   + L                               +  + TQ + WF  
Sbjct: 242 SERYIALDELGTQALNTVLTEAREIKKDFGEILHRDDFILINPRTAKPFHPTQLNRWFDR 301

Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            + + G+  + H +R F  T +A AG     + A  G       E YT 
Sbjct: 302 VSKECGIKATPHMLRHFFTTQAAIAGVPKEHVAAYLGHTDKVMTEKYTH 350


>gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP]
 gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP]
          Length = 380

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/367 (10%), Positives = 95/367 (25%), Gaps = 56/367 (15%)

Query: 17  RHGKIIYYFRKGH-----GRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + GK+ +  R         +R   L               L         ++  +     
Sbjct: 7   KSGKVNFVERYKDPYTQKWKRTSVLMEKDTPRIRKEAQKILDA--KIANILSQLKASEML 64

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129
              L  ++        +   S  S +    +I    G       I  K++++ +++   +
Sbjct: 65  FTDLFDQWWTFYQ-QEIKRTSIASLKGNIKEIRESFGLGVKVVNIDPKYVQNYLDNLDCS 123

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--------- 180
            +   +  + + + F +AV  + +  NP    + P+ K         E+           
Sbjct: 124 RNKKERNKSMLNLAFDYAVDLDIIKDNPARRAKLPRIKKTLEDWKKIEEKYLEEDEIKPL 183

Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR------------------AGVQHLQNNI 221
            +         +  L  EF+  +G R  ++                            N 
Sbjct: 184 LKELFRRPSIYRAALLAEFMSLNGCRIGEAVSLEPENRDFETKILQLHGTYDHTKGYRNG 243

Query: 222 FSIKTQKTGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQ 268
                +   +     +    M+++                       F   +   +    
Sbjct: 244 EKTTPKTNASYRETFMTKREMEIIEELEFMNELEKNTNPRYRDMGYIFTTKNGVPIQTNS 303

Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323
           F++  K    +         ++H  R    +  A+       +M   G        + YT
Sbjct: 304 FNLALKKANQRLEKPIQKNLTSHIFRHTLVSRLAENRVPLKAIMDRVGHADAKTTTQIYT 363

Query: 324 KGADRIR 330
               +++
Sbjct: 364 HVTKKLK 370


>gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 409

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   +     +  + I+   K  D  + ++T + I    +
Sbjct: 114 LDMLIKE-KESHIGIDIKEGAIHGYHSTRIHLQRFIQRKYKVSDLAFSQLTEQFIYDFRQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +     T ++ + + A R+           +  K   +  +   +E + 
Sbjct: 173 YFVGECGFQECTFYNAATFLKTVCRLAYREGLADTLLFDKAKISKGDNKLPKALDREALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K    E         R  F F  Y G    D       HL  +       K       
Sbjct: 233 KLKVLRFEDLEEEMETARDIFLFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E F  +  +     +    +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKNYQSCLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQK 390


>gi|254418245|ref|ZP_05031969.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
 gi|196184422|gb|EDX79398.1| site-specific recombinase, phage integrase family protein
           [Brevundimonas sp. BAL3]
          Length = 429

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 110/374 (29%), Gaps = 56/374 (14%)

Query: 23  YYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSPRKKPT----TLKWL 74
           Y  R G  R + L      P + T   A   A +     R  I+    +      T+K L
Sbjct: 59  YRVR-GIQRWLTLGEHGDGPDKLTADRARREAASVVVDARRGIDPGEARRRIEGLTVKGL 117

Query: 75  ISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126
           I  Y +   +        +  +   +    ++   G      ++  HI   + S      
Sbjct: 118 IELYLEKGPNDKPTKRDSSWAMDRTNLERHVVPLLGKMALDTVSRDHITGMIRSITAGKT 177

Query: 127 ------KHTPSS--------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                 K    S        A +  +++R  F WA+ + + A     +    K +    R
Sbjct: 178 AKDVKTKFRGRSIVKGGAGIADRTYSTLRATFNWAIDKGHFAGPNPCAKVERKLRPAVER 237

Query: 173 PWT-------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225
             +          +   ++  +   +    +  LL +G R ++        +  +   + 
Sbjct: 238 FLSEAQAQDLIAALDALEADATISERQGAVYRLLLLTGARRNEIAGLRWTEVDFDRRRLV 297

Query: 226 TQKTGTIIT----------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK- 274
              + T              ++  G ++ L  T    +  F  +      AT  S  ++ 
Sbjct: 298 LPPSRTKAGGRTGDRRISLNDMAYGILQRLYKTRGRSQFVFPASKGDNGYATSESKIWRD 357

Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               KA +     H +R   A+ +   GA+   +    G       E Y        L  
Sbjct: 358 KVLPKAKLEGVRIHDLRHSFASFALADGASLPMIGKALGHANSRATERYAH------LSD 411

Query: 334 KNSRRISSVVDSDD 347
              R ++  +    
Sbjct: 412 DPVRALAERIGERF 425


>gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G         YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158


>gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99]
          Length = 687

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 79/328 (24%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 219 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 278

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E         + + T +   + L ++R      + Q Y        +       
Sbjct: 279 HIEAYIEFLFEYAANKNLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 337

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 338 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 397

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 398 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 457

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 458 KRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 517

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 518 LLAHSSPEMTLRYAKLLDDTKRKAFESV 545


>gi|228926958|ref|ZP_04090024.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832693|gb|EEM78264.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 319

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/287 (9%), Positives = 64/287 (22%), Gaps = 28/287 (9%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + +  ++T K IR+     +  
Sbjct: 21  LVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 81  KMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKSPIREITFITEYQINWLI 140

Query: 187 SEGSQPRLAFEFLLYS------------------GLRCSDSCRAGVQHLQNNIFSIKTQK 228
            E  +          S                  GL                       +
Sbjct: 141 DELLEQEKYMLATYLSLSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYYNPR 200

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKS 285
               I + +       +    +            K     +   F     +        +
Sbjct: 201 VQKCIRLYINQRGKDAIPDLFVRVYKNGERKTLNKSVFNYWCKIFSKMLNEKEGKDFKIN 260

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
            H  R          G    +L +      +   E+Y K      + 
Sbjct: 261 PHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 307


>gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503]
 gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503]
          Length = 368

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 88/266 (33%), Gaps = 21/266 (7%)

Query: 92  RISFES---YFDQIIRKSGDF-DYRKITTKHIRSGVESR-----------KHTPSSAIQF 136
           R  +E     ++   +  G    +  +T +      +               + +SA  +
Sbjct: 105 REKYEKWDCVYNHFEKFVGGKCTFGDVTVELCEKFRDYLLKCKQINHPNAYISRNSAAGY 164

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
            ++ R L K A +++ +  N    +E+ + K       T +++++  +   +    + A 
Sbjct: 165 YSTFRALLKIAYKEKMLRENLNDFLEKIEWKEVKKEYLTLDEVKKLAATPCKIPVLKQAS 224

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
            F   +GLR SD  +   +  +         +  T       +  + +          + 
Sbjct: 225 LFACMTGLRISDILKLDWRDFEVGPDQGYYIRICTE--KTETEATLPISQEALELCGEWS 282

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
                + +  +      K   T+AG+ K  + H  R   A I    G   + +      K
Sbjct: 283 TGKVFKGLTRSMTHHPLKQWITEAGIRKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 342

Query: 315 TVDQAETYTKGADRIRLGIKNSRRIS 340
            V   + Y    +  +   + + +IS
Sbjct: 343 NVTTTQIYADLVNSKKR--ETANKIS 366


>gi|148993582|ref|ZP_01823053.1| Integrase [Streptococcus pneumoniae SP9-BS68]
 gi|147927803|gb|EDK78825.1| Integrase [Streptococcus pneumoniae SP9-BS68]
          Length = 324

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 99/320 (30%), Gaps = 49/320 (15%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L+  + ++    ++  ++ +  +      ++   G++   K+T   I+  V     
Sbjct: 5   TYAELVENWLETY-CHTVKKSTLMGTKFKIDKYLLPAFGNYRLDKLTPPIIQKQVNQWAK 63

Query: 129 TPSSAIQ-------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
             +   +         +  + + K+AV  + +  NP   V  P+RK +  +     D   
Sbjct: 64  DYNQLGKGFQEYPLLHSLNKRILKYAVSLQAIPFNPARDVIVPRRKEKEGQKLKYLDDDN 123

Query: 182 ---------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKT 229
                          +     + ++ LL +GLR  +        +          KT   
Sbjct: 124 LKKFLTYLEQLPNTYKNFYDTVLYKTLLATGLRIRECLALKWSDIDLKNGTLDVNKTLNI 183

Query: 230 GTIITVELPDGFMKLLA---------------------MTPIGKETFFINNDKQKMNATQ 268
              IT       ++++                         +  E  F N+  + ++A  
Sbjct: 184 IKEITGPKTKSSIRVIDLDNKTVLMLRLYKARQSQIGKEMGLTYEKVFSNSFDKHIDARM 243

Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326
            S        +AG  + + H  R   A+I  +AG    E+    G   +      Y+  +
Sbjct: 244 LSFRLVKHLERAGCPRFTFHAFRHTHASILLNAGLPYKEIQIRLGHAKLSMTMDIYSHLS 303

Query: 327 -DRIRLGIK----NSRRISS 341
            D  +           ++ S
Sbjct: 304 KDNQKNATSFYEKAIEKLKS 323


>gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1]
          Length = 190

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 9/189 (4%)

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K+TP++    L  ++    W   +  + I      E    +   +    + D  +     
Sbjct: 9   KNTPATQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIEA 68

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            + S  R  F+ L  +G+R S+     V  +  N       +T  I      +    +  
Sbjct: 69  CDNSLYRAIFKVLANTGMRVSEIVNLSVHDISVN-------ETARIRIKGKGNKERIIXI 121

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
              + +E       ++K +        K  A KAG+ K  + H  R   A    + G   
Sbjct: 122 SKELVEELMNSGFFEKKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPL 181

Query: 305 HELMATYGW 313
           +++ A  G 
Sbjct: 182 NKIQALLGH 190


>gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp.
           Ellin185]
          Length = 352

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 12/159 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTP 249
           +     E L  SG+R  +     V  L      ++          V       + L    
Sbjct: 191 RDAAVLELLYASGMRVGELASLDVSALDEANQLVRVMGKGRKERMVPYGLPAREALERWL 250

Query: 250 IGKE----TFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISAD 299
             +                         +    +A          S H +R  +AT   +
Sbjct: 251 RCRGALAADGERALFVGVRGRRIDQRIVRELVNRATASVDGAPTLSPHALRHSAATHLVE 310

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
            GA    +    G  ++   + YT   A+R+R G + + 
Sbjct: 311 GGADLRTVQEYLGHASLATTQIYTHVSAERLRAGFEQAH 349



 Score = 40.9 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 75  ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVESR---K 127
           I ++          + N+  ++      +       D      +T   +RS + ++    
Sbjct: 2   IEQFLDHLSAERDRSTNTVRAYSVDLASLRLHLTGADVASWSDLTLNDLRSWLAAQSEAG 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           ++ S+  + +++++   +WA R+  +A +P + +  P+R T      
Sbjct: 62  NSRSTLARRVSAVKTFCRWARRRGVIATDPSVRLSAPRRMTSLPEVL 108


>gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism]
          Length = 286

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288
               V    G+  +     + ++ +     +  ++        K    +AG+    S H 
Sbjct: 190 KYRGVATQWGWQYIFPSRNLCRDPYSGQWIRHHLHEQTVQRAVKQAVRRAGIQQPASCHT 249

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   AT   + G     +    G   V     YT  
Sbjct: 250 FRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286


>gi|224539575|ref|ZP_03680114.1| hypothetical protein BACCELL_04483 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518809|gb|EEF87914.1| hypothetical protein BACCELL_04483 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 408

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 94/283 (33%), Gaps = 28/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L+  Y +               ++   F++  +++           D    ++  + I
Sbjct: 111 RTLLEVYAEHNEKCRALIGKEYTESTVTKFDTSINRLKEYIRSCYHRDDIMLAELDGQFI 170

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R      K       +SA++ L +++ + + A+  +++   P   +   K++   +   +
Sbjct: 171 RDFDFWLKTEKHCQNNSALKHLKNLKKVVRIALANDWIKKAPFYGI-HFKQEEVNVEFLS 229

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +E++    +      +    R  F F  ++ L   D  +   +HL  +       +    
Sbjct: 230 REELDILMNKEFTIKRLEQVRDIFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQ 289

Query: 233 ITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T ++ +        ++L       E          ++  + + + K  A   G+ K   
Sbjct: 290 KTSQMCNIPVLSIPQRILRKYEDNIECIKKGVLLPVISNQRMNAYLKEIADLCGITKRLT 349

Query: 287 -HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H  R  +AT+       +   +    G   +   + Y K  D
Sbjct: 350 THVARHTAATVVFLANDVSMENVSKILGHSNIRMTQHYAKVLD 392


>gi|198241749|ref|YP_002215264.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197936265|gb|ACH73598.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623011|gb|EGE29356.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 359

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 101/357 (28%), Gaps = 31/357 (8%)

Query: 1   MTPSL---RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57
           M+       LP ++T  R       +       +   L        I   + A       
Sbjct: 1   MSRKKYDANLPRYLT-YRKASKSFFWR-NPVTDKEFPLGQIARRDAITQAIEANNFIAQN 58

Query: 58  REYINSPRKKPTT----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
              +    K   T    +   I  Y       +L+VN+     +    +  K G+    +
Sbjct: 59  HTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAE 118

Query: 114 ITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            TT+HI   +ES   +   + A    + +  +F+ A+ + ++  NP  +   P+ K    
Sbjct: 119 ATTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARE 178

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R   +       +         LA +  L +G R  D        + +N   +   KTG 
Sbjct: 179 RLQLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGM 238

Query: 232 I--------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277
                              + D    +     +       N+    ++    +  F    
Sbjct: 239 KIAIPLSLTLEAPGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKAR 298

Query: 278 TKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             +GVN      + H +R   A                 G    +  + Y    D  
Sbjct: 299 KASGVNFSNNPPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTLANTTKLYLDERDDK 354


>gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 286

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 78/256 (30%), Gaps = 9/256 (3%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I E++   +    +  +   +     Q  +   + D + IT + + +   S   K+  SS
Sbjct: 11  IGEFKIYLYGEERSKATIEKYMRDVMQFYKYMPEND-KAITKEKLVAYKNSLSEKYKVSS 69

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               L ++  L  +            +       + E      +       +   +  + 
Sbjct: 70  INSMLVALNGLLDYLKLGNLKLKLHKI-QRSVFYEEERELTKDEYKRLLDTALKRDDKRL 128

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM--KLLAMTPI 250
            +  + +  +G+R S+     V+ ++     ++ +     + +      +         I
Sbjct: 129 YMLLQTICGTGIRVSEHKYITVEAVKEGKAVVRNKGKTRTVFIPKKLKKLLKDYCKQENI 188

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                FI  + + M+ +      K    +A V+      H +R   A            L
Sbjct: 189 STGAVFITKNGRPMDRSNIWQAMKKLCQEARVDDKKVFPHNLRHLFALTFYRLQKDVVRL 248

Query: 308 MATYGWKTVDQAETYT 323
               G  +++    YT
Sbjct: 249 ADLLGHASIETTRIYT 264


>gi|255319223|ref|ZP_05360440.1| integrase [Acinetobacter radioresistens SK82]
 gi|255303616|gb|EET82816.1| integrase [Acinetobacter radioresistens SK82]
          Length = 432

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 98/361 (27%), Gaps = 52/361 (14%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGS----------TPKREYINSP------RKKPTTL 71
           G   R  L      T   A   A                K++ I+         K+  T+
Sbjct: 64  GRTVRSTLGLHGNITLAQAREMAREKLLQMSQGINPNDEKKKKISDEDDRVKLEKQKPTV 123

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTP 130
           K     Y       +L   +   + +  D+ +    +F   +I+ K I+       K++ 
Sbjct: 124 KEAFQNYM---SLKTLKPKTIDDYTTVIDKYLEDWQNFKLDEISRKMIQQKHADLSKNSK 180

Query: 131 SSAIQFLTSMRVLFKWAVRQE----------YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           + A   +   R ++ +++                    LS ++   K +  + +  ED  
Sbjct: 181 AQANMAMRVFRAVYNFSIEHYLDENDQPILIPYNPVKTLSAKKVWNKIKRRKTYINEDQI 240

Query: 181 QFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
                     +         R     L+ +G R  +        +      I +      
Sbjct: 241 PDWIRAIFDYKDRGQSLETNRDFMLTLVLTGFRREECESLPWSSIDLKYGKITSIDPKNG 300

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHG 288
               LP G      M    ++           +A+      S           +  + H 
Sbjct: 301 EPHTLPMGDFLWELMKKRRRDIQSEWVFPSAKSASGHIVNISKVRSKINELCEIKFTFHD 360

Query: 289 VRKFSATIS--ADAGATAHELMATYGWKTVD----QAETYTKGADRIRLGIKNSRRISSV 342
           +R+   +I+   D G   + +      K           Y + +D+          I  +
Sbjct: 361 LRRTFGSIAEGLDYGH--YTIKRLLNHKKDSDDNDVTSGYIQVSDKRLRA--AMNEIEDI 416

Query: 343 V 343
           V
Sbjct: 417 V 417


>gi|239631947|ref|ZP_04674978.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526412|gb|EEQ65413.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 390

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 91/386 (23%), Gaps = 63/386 (16%)

Query: 16  TRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
            R     Y        G           +   A ++A +       Y         TL  
Sbjct: 6   KRGDSWQYRVSYKDINGEYHTTSQGGFRSKSAAKLAA-SKVEIDASYGAKIDHANITLIE 64

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR------------ 120
              ++  +   G  +  +   +      ++   G +   + IT    +            
Sbjct: 65  YWDQWLSAFKLGKHSNATESHYPGIRKALLSYFGPNTRIKDITRSDYQTFLNAYAAGTVA 124

Query: 121 -----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                     +K    +       ++ +   A+    ++ N   ++  P  K +      
Sbjct: 125 PRHKPKSHAPKKRARGTVRNLHQYVKAMAASAMDDLLISRNFANNISIPGSKGKDTALKY 184

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLY------SGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
            +     K      S   +   +         +G R ++        +     +I+  KT
Sbjct: 185 LQASDYKKLKKYCYSHADMTHMYNYVIAAGVDTGARFAEVIGLTWPDIDFENKTIRITKT 244

Query: 230 GTII---------------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT- 267
              +                      +      +         +  F   +    M+   
Sbjct: 245 WDWLSGGGFKATKTPSSVRTIEVTDDLLQLLRQLHRQQNEYFMRHGFRDPDQLVFMSYRH 304

Query: 268 ------QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                   +   +      G++   + HG+R    +     G   + +    G   V   
Sbjct: 305 SVLRDGTINADLRRLLPSLGISPVITFHGLRHTHVSYLLSQGVDINYISHRLGHADVTIT 364

Query: 320 ET-YTKGAD-----RIRLGIKNSRRI 339
              Y+   D     +  L +K    +
Sbjct: 365 LRVYSHLLDVANKQQSALAVKALSNL 390


>gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium]
 gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium]
 gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              +      +  +     +  +       +  + A       KA   +AG+ KS   H 
Sbjct: 66  KYRSANRSWPWQYVFPADRLSVDPRSGEKRRHHVLANNLQKAVKAAMVRAGIRKSGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            R   AT   + G     +    G K V     YT   
Sbjct: 126 FRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 7/123 (5%)

Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                  G   +       +                   L++ P        +  ++++N
Sbjct: 46  WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAKLSVDPQTGVERRHHLFEERLN 105

Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                   K    +AG+  + S H +R   AT    AG     +    G   V     YT
Sbjct: 106 RQ-----LKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYT 160

Query: 324 KGA 326
              
Sbjct: 161 HVL 163


>gi|312952563|ref|ZP_07771428.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102]
 gi|310629464|gb|EFQ12747.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102]
 gi|315153426|gb|EFT97442.1| putative phage head-tail adaptor [Enterococcus faecalis TX0031]
          Length = 389

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 120/380 (31%), Gaps = 47/380 (12%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG---HGRRIR---LPYPHESTFIPAYMSALTGST 55
            P +     V +++ + GK  +    G    G RIR     Y  +     AY   +   +
Sbjct: 1   MPKIS---NVYQDK-KSGKWYFVANLGYDEKGNRIRHWGRGYNSQREAKRAYDDYMNDFS 56

Query: 56  PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
                    +    + K     Y K  +  S+   +  +  S  D       +   + IT
Sbjct: 57  D----TAIKKNSTMSFKEFYETYFKPDYKRSVKSRTYENRVSSMDIHFAYFFNRKLKDIT 112

Query: 116 TKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
              I+          SSA         +     AV    +  N    V   K+  + +  
Sbjct: 113 PPIIKKWQNILSENYSSAYIRNIYGLFQKSLDLAVTLGLLNKNVAKQVGNVKKVKKKVDF 172

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNN--------- 220
           WTK++ ++  + +            L++    +GLR  ++     +   +          
Sbjct: 173 WTKDEFEKVIATFDLSDYHEYFSFVLIWLLFMTGLRFGEAQALEWEKDIDFENRTLRVNK 232

Query: 221 ---------IFSIKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNA 266
                     +  + +   +   + L D  ++LL              + ++ +    N 
Sbjct: 233 SMYYKNASEYYLTEPKTKASNRVIALDDDTVELLKQWKTLQTKNIPSKYVLSYNGVPTNK 292

Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
           +         +  A V++  AH +R   A++    G  A  +    G + +     TY  
Sbjct: 293 SATYHVITRHSKLASVHRIKAHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGH 352

Query: 325 GADRIRLGIKNSRRISSVVD 344
             +      + +R++++++D
Sbjct: 353 LYENAN--KEVARKLTNIID 370


>gi|167560999|ref|ZP_02353915.1| Integrase or site-specific recombinase [Burkholderia oklahomensis
           EO147]
          Length = 418

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/370 (9%), Positives = 97/370 (26%), Gaps = 31/370 (8%)

Query: 9   PFVTKERTRHGKIIYYFRK----GHGRRIRLPY------PHESTFIPAYMSALTGSTPKR 58
             +  E    G   + +R          + +                 Y   +       
Sbjct: 38  GGLVLEVMASGSKFWRYRYSLHGKQQPVVTIGEYPAVSLTMARERARRYAEIVASGVSPV 97

Query: 59  EYINSPRKKPTTLKWLISE--YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
                 R    +L  +     Y         +     + +   ++ +    G      +T
Sbjct: 98  ADARKDRGAVKSLDTVREFGGYWIEQQMAGKSEEYLRTTKRALEKDVYPAIGGKSVSDVT 157

Query: 116 TKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGI 171
              + +  +  K    P  A+     ++ ++++A+ ++ V  NP  ++       +    
Sbjct: 158 PGDVLAICDRIKKRGAPKMALSTRNVLKRMYEYAIARQLVTANPAQAIVARFVATQDSRD 217

Query: 172 RPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227
           R  + +++             R   LA   L+ + +R S+   A       +    +   
Sbjct: 218 RVLSPDEIGHVLRAVYASGIRRPLKLAVHLLVLTMVRKSELIEARWDEFDLDASIWRIPA 277

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV- 282
           +              + +AM     ++   +      +                    + 
Sbjct: 278 ERMKKDREHWVYLAPQAVAMLRELHDSRISHRYVFPSSRGADRPIAKSTLNQAVRALDME 337

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSR 337
             +   H  R+ ++T   + G  +  +              Y +     +R R+    + 
Sbjct: 338 VQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKGIKGVYNRAEYAEERRRILALWAD 397

Query: 338 RISSVVDSDD 347
            + + +D   
Sbjct: 398 FVDAQIDEGR 407


>gi|332160828|ref|YP_004297405.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665058|gb|ADZ41702.1| Integrase family protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 275

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 22/264 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +  +         +  K    G   ++ +P++  Q L+ +R L + A  +    +    
Sbjct: 4   RKHRQIWESKRDAALRKKKPIPGYVEKQVSPATRSQHLSFIRSLLRAAADEWK-WLAKAP 62

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            ++  K ++  IR  TK++     +   E  +P     F L +GLR S+        +  
Sbjct: 63  VIKTRKPQSRRIRWLTKDEAVTLINCMPENFRP--VVVFALATGLRRSNILDLEWSQIDM 120

Query: 220 NIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------ 269
                            I V L D   K+L         +   +      A         
Sbjct: 121 QRKVAWIHPENAKAGKAIGVALNDMSCKVLREQIGRHSRYVFVHTSAWHRADGTKTAEVR 180

Query: 270 ------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +  ++    ++G+ +   H +R   A+    AG     L    GW++++    Y
Sbjct: 181 KMRVDDNTAWRNGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRY 240

Query: 323 TKGADRIRLGIKNSRRISSVVDSD 346
              +       +++R+I  V+  +
Sbjct: 241 AHLSPNH--LTEHARKIDEVMGFN 262


>gi|317152280|ref|YP_004120328.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942531|gb|ADU61582.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 355

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 102/344 (29%), Gaps = 28/344 (8%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           ++ GK   Y     G+R    +        A  +       K + +    +    L  ++
Sbjct: 5   SKAGKGFRYDFMVKGKRYTKAWFGTKREAQAAQAQRKKEVAKADGMA--ERNDMDLLDML 62

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSA 133
           +    +      +     +      +++R  GD     IT++         SR  TP +A
Sbjct: 63  NRRLDALLERCFSTQYYKNTRYAAQRLLRHFGDVPCSTITSRMADDYLLSRSRSSTPVAA 122

Query: 134 IQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191
              L  +R  F WA+++   ++A NP   +E         +  T +     +   +   +
Sbjct: 123 NADLLLLRATFAWAMKRGQRFIADNPFAGLESFPSHLAEKKKRTPDSQALDRIIAAAKPE 182

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELPDGFMKLL 245
            +     +  +  R  +  R   + +      ++ +             V + D   ++L
Sbjct: 183 DQPYLWVIRETLARSVEVHRLKWKRVNFEERYVELKTFKNKDRKPVLRQVPMTDKLYEVL 242

Query: 246 ------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292
                        +      +                   K    KAGV   S H  R  
Sbjct: 243 SELYARRDPEKEWVFWCRSYSHKQKRMVVGPYTKGRYSMLKTACEKAGVGYYSFHRFRAS 302

Query: 293 SATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRLGI 333
            A++  + GA    +    G       E Y    +  +R  + I
Sbjct: 303 GASVMDNNGALISGIQHLLGHADRRSTEIYLEKLRNVERDAMAI 346


>gi|253564822|ref|ZP_04842278.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946287|gb|EES86664.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 410

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 90/282 (31%), Gaps = 26/282 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L+  Y +               ++   F++  +++           D    ++  + I
Sbjct: 111 RSLLEVYAEHNEKCRALIGKEYTESTVTKFDTSINRLKEYIRSRYHRDDMMLAELDGQFI 170

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--P 173
           R      K       +SA+++L +++ + + A+   ++  +P   +   + +        
Sbjct: 171 RDFDFWLKTDKHCQNNSALKYLKNLKKVVRIALANGWIKKDPFYGIRFKQEEVNVEFLSR 230

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
              + +   +       Q R  F F  ++ L   D  +   +HL  +       +     
Sbjct: 231 EELDILMNKEFAIKRLEQVRDIFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQK 290

Query: 234 TVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
           T ++ +        ++L       E          ++  + + + K  A   G+ K    
Sbjct: 291 TNQMCNIPVLSIPQRILGKYEDNAECIKKGVLLPVISNQRMNAYLKEIADLCGIAKRLTT 350

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H  R  +AT+       +   +    G   +   + Y K  D
Sbjct: 351 HVARHTAATVVFLANDVSMENVSKILGHSNIRMTQHYAKVLD 392


>gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158


>gi|110805141|ref|YP_688661.1| putative integrase of prophage [Shigella flexneri 5 str. 8401]
 gi|110614689|gb|ABF03356.1| putative integrase of prophage [Shigella flexneri 5 str. 8401]
          Length = 416

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 100/342 (29%), Gaps = 30/342 (8%)

Query: 21  IIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK--------- 66
             + +R G GR     RI+L    + +   A   A            +PR          
Sbjct: 52  WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKA-AQCRAWLAEGKNPRHELNYTVQEA 110

Query: 67  -KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
            KP T+   ++ + +S    +  V+     +   + +I+  G     K   +H  +  + 
Sbjct: 111 LKPVTVGNALTYWLESYAKEN-RVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQ 169

Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKED 178
             K TP +A   L + +   K+  R+ Y   N    +      ++P      +      +
Sbjct: 170 VAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGE 229

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
           + Q                 L+  G R  +   + +             K  +   V + 
Sbjct: 230 LLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIF 289

Query: 239 DGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSA 294
               + +            +      +    T  S + +    +    + S H +R+   
Sbjct: 290 RPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFT 349

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334
           T+  D G   H +    G +       Y      D  R  + 
Sbjct: 350 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALD 391


>gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
 gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein
           [Aciduliprofundum boonei T469]
          Length = 305

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 85/275 (30%), Gaps = 15/275 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHTPSSAI 134
           E++K       ++ +      Y   I  +    D  +   +     +    R  +P +  
Sbjct: 5   EFKKWLLSHDYSLTTIERAIRYVKYIESRGLKIDEVEDEDEVLEFFARERERGVSPKTLN 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
            ++  +   F +  R+  + +N                   K+ +     ++S   + R 
Sbjct: 65  NYVKQLNRYFSF--RRVDIHLNYFKEYRDETDMRIPTDEQVKKLLDLNWKYYSVDLRNRT 122

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTIITVELPDGFMKLLAMT 248
               L  +GLR ++      + L         +  ++  K      V +P   +K+L   
Sbjct: 123 ILALLFATGLRVNEVINLDWKDLYYDNVQGVWMLHVRMGKGRKPRKVPVPPKVIKMLFEW 182

Query: 249 PIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
              +     N        +++   F    K  A +AG+    AH  R + A    + G  
Sbjct: 183 RKIQPKTDPNAIFTTPGGRISHAYFRKIVKVAAERAGIPWFHAHLARHWRAIKFLEEGVN 242

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
              +    G  ++   + Y    +  +   +   +
Sbjct: 243 LETIRRYLGHSSLKTTQIYLSKMESSKAVEEIKNK 277


>gi|146319950|ref|YP_001199661.1| hypothetical protein SSU98_0101 [Streptococcus suis 98HAH33]
 gi|145690756|gb|ABP91261.1| unknown protein [Streptococcus suis 98HAH33]
          Length = 318

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 90/309 (29%), Gaps = 46/309 (14%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L     +     +  ++   +  + +   I     + +  K++ +HI    E  K 
Sbjct: 3   TTDMLFDILEEEDRQNNRKISYISTQRNNYERHIKPYFINTNLNKLSYEHIFEFREYLKI 62

Query: 129 TP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
            P           ++  + +  ++ +F   VR+  +  NP  ++ +       I  W  E
Sbjct: 63  KPKKQNDSSTLSHNTVNKIMILLKKIFDTGVRKSLIDKNPVENIRKLPISKPTINFWNVE 122

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQ----------------HLQNN 220
           +  +F+   +       L F    ++G+R  +                        +   
Sbjct: 123 EFNEFRKLITSDEISYDLFFTIAFFTGMRLGEIVALTWYDINLITNSIHITKTAYFVNGT 182

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQ 268
                T+       + +     ++LA     ++               I +    M    
Sbjct: 183 NHINSTKTRAGTRRITINHKLARMLADWKEKQKDLLKEFTTDTENLQVIQSTPLPMTKNM 242

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
               FK    +         H +R   A++  + G     +    G  ++    +TY+  
Sbjct: 243 IDKKFKQILARNDYLKKIRIHDLRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHL 302

Query: 326 --ADRIRLG 332
             + +  L 
Sbjct: 303 YPSKQKTLA 311


>gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205]
 gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205]
          Length = 363

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 13/151 (8%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
             +G+R S++C   +  +      ++   K     TV       + L         +   
Sbjct: 210 YATGVRVSEACGLDIADVDPGRRVLRVLGKGNRERTVPYGVPAQRALDAWLRHGRPWLAG 269

Query: 259 NDKQ----------KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307
                         ++N T         A  AG+   + HG+R  +AT   + GA    +
Sbjct: 270 PRSANALLLGARGGRLNPTTARGVVARCAAAAGLPPTTPHGLRHATATHLLEGGADLRTV 329

Query: 308 MATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
               G  ++   + YT    +R+R   + + 
Sbjct: 330 QELLGHTSLASTQIYTHVSVERLRAAYRQAH 360


>gi|57867419|ref|YP_189034.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282919766|ref|ZP_06327498.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283771081|ref|ZP_06343972.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|293367758|ref|ZP_06614407.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57638077|gb|AAW54865.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A]
 gi|282316404|gb|EFB46781.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus C427]
 gi|283459675|gb|EFC06766.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471202|emb|CAQ50413.1| transposition regulatory protein TnpA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|291318097|gb|EFE58494.1| transposase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|323464882|gb|ADX77035.1| Tn554-related, transposase A [Staphylococcus pseudintermedius ED99]
 gi|329734754|gb|EGG71060.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329734787|gb|EGG71092.1| phage integrase, N-terminal SAM domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 370

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/322 (8%), Positives = 82/322 (25%), Gaps = 70/322 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK------- 127
            Y K       ++N++ ++                  ++++  +    +   K       
Sbjct: 29  RYLKYLDSVKKSLNTKKTYAYALKNFFVYLESKKICYKEVSFDNFVDFIRWMKTPFEYEN 88

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    + ++  + +   
Sbjct: 89  VLSYHRKEKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKSFMHH 148

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +++  +                             + +   + L  +GLR  +   
Sbjct: 149 INKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNIRDKFLIQLLYETGLRIGEVLS 208

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 209 LRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 268

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + MN +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 269 SDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 328

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   +      Y    + 
Sbjct: 329 QERLGHSNIQTTINLYVHPTEE 350


>gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium]
          Length = 161

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            K  A  AG+  + S H +R   AT   + G     +    G   V     YT  
Sbjct: 107 VKEAARAAGIAKHVSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161


>gi|82776667|ref|YP_403016.1| integrase [Shigella dysenteriae Sd197]
 gi|309789020|ref|ZP_07683615.1| integrase [Shigella dysenteriae 1617]
 gi|6759954|gb|AAF28112.1|AF153317_4 integrase [Shigella dysenteriae]
 gi|81240815|gb|ABB61525.1| integrase [Shigella dysenteriae Sd197]
 gi|308923291|gb|EFP68803.1| integrase [Shigella dysenteriae 1617]
          Length = 409

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 104/356 (29%), Gaps = 35/356 (9%)

Query: 22  IYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYI---NSPRKKPTTL 71
            Y +R          G    +           +   LT     R  +      + +  T+
Sbjct: 54  FYRYRWNGKAAQLAIGSYPSISLAQARERRQQFRDWLTEGQDPRRQVMLEKQKKSQAMTV 113

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           K     + +       L           F+  I    G+    + T  H  S  +S    
Sbjct: 114 KEAFDYWEQHYCIPEGLKK--LKVNRRDFNNHIAPVLGNVIVEQTTKAHWLSLFDSMGRR 171

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQFKSF 185
             +  Q L  M+  F++   +  ++INP  S+ R        T   +   +E    + + 
Sbjct: 172 VVTG-QMLGLMQRTFRFCSNRGVISINPLESLRRSDVGMAAATRDRKLSDEEIKIVWSAL 230

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
              G + +L  +FLL +G R ++   A  +    N  +     +       +       +
Sbjct: 231 SDMGERQKLVVKFLLMTGCRTAEIRTARWEWFDFNENTWTVPASEYKTGKTVRRALPPAI 290

Query: 246 AMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292
                             +  +    D +       +++      K G+   S H +R+ 
Sbjct: 291 VKLMQEVKKTSVSQHVLTRARYNGPEDDKPPQQPHIALFSAQIIAKTGMKTWSLHDLRRT 350

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNSRRISSVVDS 345
            AT  ++ GA  H +    G         Y       D+          +  +VD+
Sbjct: 351 VATRLSELGAPPHVVEKLLGHHMSGVMARYNLHDYLEDQRHWLQVWQNYLEGLVDA 406


>gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378]
          Length = 309

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 82/291 (28%), Gaps = 24/291 (8%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
            + ++K  T      E+      G++   +   +     +I     D   + +     + 
Sbjct: 2   KAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPDLKIKDLDRYTYQQ 61

Query: 122 GVESRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWT 175
            + S   T            ++     AV +  ++ NP   +    + P+ K        
Sbjct: 62  LLNSYALTHEKQTTMDFHHHLKGAILDAVDEGVISQNPTRKIVIKGKTPRPKKAKFLNQF 121

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230
           +      +    E          ++ +GLR S++          +   I   KT      
Sbjct: 122 EVQALLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSKQKIIINKTWDYKMV 181

Query: 231 -----------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
                      +   +++        +     K+       K ++  +  +         
Sbjct: 182 TGSFQPTKNESSNRKIQIDWQLAMQFSQLIKTKDPDKPIFVKSRVFNSTINNRLNVLCEN 241

Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328
           A +   + H +R   A++   AG +   +    G  ++   + TY      
Sbjct: 242 ANIPTITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQE 292


>gi|17158647|ref|NP_478158.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
 gi|17134596|dbj|BAB77154.1| integrase-recombinase protein [Nostoc sp. PCC 7120]
          Length = 360

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 94/305 (30%), Gaps = 51/305 (16%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKIT------------- 115
            LI  +  S      +  +R ++        D +  + G  D R +T             
Sbjct: 44  QLIELWVHSVTIK--SDQTRRAYRQIGYELVDYMHSRFGISDLRMVTLFHLHAYLTWLKD 101

Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRP 173
            K +R    +   + ++A ++  +++ L++W  R         L  +           R 
Sbjct: 102 EKPVRGKKNTYGISKNTAAKYTAAIKSLWEWGTRASIGYFAIDLGKDLSIQWDDKLAERI 161

Query: 174 WTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
            ++ ++ + +          +      L F  + YSG+R  +  R    + +  I     
Sbjct: 162 LSEREIAKLEKAAMAVDLQHNTNKMHWLLFTLVFYSGVRAGEIARQTSDYGKRVITPGLF 221

Query: 227 QKTGTI----------------ITVELPDGFMKLLAMT-------PIGKETFFINNDKQK 263
            +                     T+ L      +L               +    +  + 
Sbjct: 222 WRQFREDGDCLLLTVTGKRNKTRTISLDPETSAVLLDYRGDASNDQPVFPSPSRRDRGKP 281

Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           ++     +  +  +  AG+  SAH +R   AT++   GA+  +L A  G  +      Y 
Sbjct: 282 LSDRGLRLMMEEISACAGIKFSAHFLRHTHATLAKKNGASDFDLQADLGHASPATTAKYI 341

Query: 324 KGADR 328
               R
Sbjct: 342 HHVGR 346


>gi|302520688|ref|ZP_07273030.1| integrase [Streptomyces sp. SPB78]
 gi|302429583|gb|EFL01399.1| integrase [Streptomyces sp. SPB78]
          Length = 555

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 107/355 (30%), Gaps = 62/355 (17%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
                R         +   +  L     K     + +    TL+  ++ + ++    +++
Sbjct: 5   GKPDRRHVSRKTRAEVTKVVRELERQRDKGSVRKAGQS--WTLETWLTHWVENIAAPNVS 62

Query: 89  VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLF 144
            N+   +    +  +I   G     K+  +H+    +  + T S   +A Q   ++R   
Sbjct: 63  ENTIDGYRVAVNHHLIPGLGAHRLEKLEPEHLERFYKKMQETGSAAGTAHQTHRTIRTCL 122

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204
             AVR+ ++  NP    + P+ + + + P++ E++Q+  +   +  +    +   L  GL
Sbjct: 123 NEAVRRGHLTRNPATIAKAPRLEEDEVEPYSVEEVQRLLAEAGKH-RNAARWVIALALGL 181

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------------------------- 239
           R  +        +   +  I+ ++       E                            
Sbjct: 182 RQGEVLGMQWTDVDFELGVIRVRRGRLRPRYEHGCGNRCGRKPGFCPQKINVRRETKNVK 241

Query: 240 --------------------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273
                                         L       KE  F +   + +N       +
Sbjct: 242 SRAGQRPIGVPDELMTLLRRHKEEQGRERALARDLWTEKEYVFTSPVGEPLNPNTDFHRW 301

Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW---KTVDQAETYTK 324
           K     AGV +   H  R  +AT+    G +   + +  GW   K+      Y  
Sbjct: 302 KDLLKAAGVRDGRLHDARHTAATVLLILGISDAVVDSIMGWEPGKSARMRRRYQH 356


>gi|299783287|gb|ADJ41285.1| Integrase [Lactobacillus fermentum CECT 5716]
          Length = 370

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/334 (9%), Positives = 90/334 (26%), Gaps = 30/334 (8%)

Query: 15  RTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
             R  +            +R +    +      A  +A       +E + +P     TL 
Sbjct: 8   TKRGSRYQARVNWYDNQDKRHQKSAGYFDRRKDAVATAERVRDELQEQL-NPDLTEITLA 66

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTP 130
                + +      +   ++  ++   + + +       + +     ++ +      H  
Sbjct: 67  DYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFINWYGADHAR 126

Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFKS 184
            S  +   +++ +  +A+  E +  +   +++    K    +        T   M   K+
Sbjct: 127 DSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVIANKDRERKVEYLNQKETAVLMDAVKA 186

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
                   +      L +G+R S+        L     +I   K+               
Sbjct: 187 DLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEKAFKATKTLS 246

Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285
           +   + +    +K+LA          F+     Q       +   +    +  + K    
Sbjct: 247 SRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGXALNKALRLIMHQQAIXKQGFH 306

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            H +R          G   + +    G   +   
Sbjct: 307 FHSLRHVHVAYLLGKGVDVYAISKRLGHSDITIT 340


>gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 293

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 79/281 (28%), Gaps = 13/281 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I+E++        A  +   +     +++    + D  K +    R  + S ++ P +  
Sbjct: 6   INEFQSYLRNEEKAEATISKYLHDVKEMLVFIEEMDLNKESLIEYRKYLSS-QYKPQTVN 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L+++    K+      + +      +R     +              +  +   Q   
Sbjct: 65  GKLSAINAFLKFK-DLLELKVKFLKVQKRVYVDEKRELTEQDFKRLIAAADRNGNKQLYY 123

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254
               L  +G+R S+     V+ ++     I  +       +  P   ++LL         
Sbjct: 124 LMMVLYGTGIRISELPFVTVEAIETGRAEISMKG--KYRVIIFPKNLVRLLKEYTKVSNI 181

Query: 255 FFINNDKQKMNAT----QFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHEL 307
                 + +              K     A V  S    H  R   A            L
Sbjct: 182 RQGCIFRTRSGRNLDRSNIYHSMKRLCRDAQVQPSKVFPHNFRHLFAKCFYSIEKNLSHL 241

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
               G  +++    Y   A  I+   K   ++   VD   P
Sbjct: 242 ADILGHSSIETTRIY--VAASIKQYEKIMDKMRIEVDKQKP 280


>gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
 gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus
           casei str. Zhang]
          Length = 382

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 115/379 (30%), Gaps = 48/379 (12%)

Query: 11  VTKERTRHGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           + K   + G + Y            R+  +             S L        Y  +  
Sbjct: 3   IKKVELKSGAVRYRVTVNAGLVAGKRKNIVRNVQSMQKARLLESKLKLDVANGLYDENDT 62

Query: 66  KKPT-TLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123
             P  T   L +++       ++  ++   + + + + +I   G      I T  I+S V
Sbjct: 63  TPPVHTFSDLYNQWWPIY-VQTVEGSTAYKTKQLFNNHLIPMFGSKTLTAIKTGSIQSAV 121

Query: 124 ESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQ 180
              + T + A  +    ++ +  +AV+ +Y+  NP   VE P+    G     W  + + 
Sbjct: 122 SQWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVA 181

Query: 181 QFKSFWSEGSQPRLAFEF--------------------------------LLYSGLRCSD 208
           +F +     + P     F                                   +GL   +
Sbjct: 182 RFLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKE 241

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           S +            +  + T  +          K++++           + ++++   +
Sbjct: 242 SIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINR 301

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            + W K       +    + HG+RK   T    +G     +    G  T D     Y  G
Sbjct: 302 PNKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYA-G 360

Query: 326 ADRIRLGIKNSRRISSVVD 344
            ++     +   +++  ++
Sbjct: 361 MNQS-DAREGIDKLAEYME 378


>gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
 gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768]
          Length = 72

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  K  A++AG+   S H +R   AT     G     +    G   ++  + YT  A+  
Sbjct: 1   MIVKEYASQAGIEHISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVR 60


>gi|288917810|ref|ZP_06412171.1| integrase family protein [Frankia sp. EUN1f]
 gi|288350738|gb|EFC84954.1| integrase family protein [Frankia sp. EUN1f]
          Length = 380

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 113/360 (31%), Gaps = 40/360 (11%)

Query: 2   TPSLRLPPFVTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58
            PSL L  +      ++G   +    +R   G R RL   H  T   A  +  T    + 
Sbjct: 3   RPSLNLGTYGNLYTAKYGDGYRARARYRDFDG-RTRLVERHAKTKGAAEQALRTALRDRA 61

Query: 59  EY--INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
                         +  L   + +S      + N+  ++ +  D+ +I   G+   R++T
Sbjct: 62  RVDIGTGAITAEAKVAVLAEAWFESVQRQDRSPNTTAAYRTRLDKSVIPGLGELRIRELT 121

Query: 116 TKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGI 171
              +   +   + KH P++A Q    +  +   A R + +  N              E  
Sbjct: 122 VGVVDRFLSIIAEKHGPAAAKQTRAVLSGMCGLAARHDALDRNVVRDAGPIAEATPKEQP 181

Query: 172 RPWTKEDMQQFKSFWSEGSQP--RLAFEFL---LYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           R  T + +++ +       +   R   EF+   + +G+R  ++       +  +   I+ 
Sbjct: 182 RALTLDQLRELRVALRNDPKAVGRDIPEFVDLLMSTGVRIGEAAGLTWGAVNLDEGWIEI 241

Query: 227 QKTGTII--------TVELPDGFMKLLAMTPIGKETFFINNDKQK-------------MN 265
           + T   I                 + L +      T     D Q               +
Sbjct: 242 RSTVVRIKGQGLFNKPKPKTKAGHRRLQLPSWMIRTLKQRFDNQPDDVTVFPAQLGGLRD 301

Query: 266 ATQFSIWFKAKATKAGVNK-SAH-GVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
            +      +      G+   ++H   RK  A+    AG TA       G + V   +  Y
Sbjct: 302 PSNTQADLRDAFKAVGMEWATSHIVGRKSVASAMDSAGLTARAAADQLGHRQVSLTQDRY 361


>gi|257056384|ref|YP_003134216.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
 gi|256586256|gb|ACU97389.1| site-specific recombinase XerD [Saccharomonospora viridis DSM
           43017]
          Length = 402

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 104/349 (29%), Gaps = 49/349 (14%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79
           +    +    G+ +R              + L  +     Y++ P     +   +  ++ 
Sbjct: 32  RWEVMYYDQTGK-LRSEVAATKARAEQRRTELEAALSTDTYVD-PTTAKVSFAEVADKWL 89

Query: 80  KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT--------- 129
           +S     L  ++   +    D  +  + GD   R I ++ I + + S   +         
Sbjct: 90  ESR--HDLRPSTWWKYRGLLDTHVNVRWGDVQLRAIRSEDIAAWLGSLLKSRTEGGSGLG 147

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
           PS A      + ++  W V    +  NP   V+ P R        + E +++  +   + 
Sbjct: 148 PSQARHAFRVLSMVLDWCVP-AKLLRNPAEGVKLPVRPETEHVYLSFEQVERLANAAGDL 206

Query: 189 ----------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
                      S  R     L Y+GLR  ++    V  +      I+   T   +     
Sbjct: 207 RTKYGRPTASASVNRALILLLAYTGLRWGEAAALRVGRVDLVKRRIRVVSTFYELNGVQH 266

Query: 239 DGFM----------------KLLAMTPIGKETFFINNDKQKMNATQFSIWFK------AK 276
           +G                  +L  +     +   +    +  +    +   +        
Sbjct: 267 EGPPKSGKHRTVAIPPSLVPELKQVIGGRGDHELVFTTARGASLRANNWRVREFNPAVKL 326

Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           A   G+  + H +R  +A+++  AGA    L    G          Y  
Sbjct: 327 AKLDGLGLTPHKLRHTAASLAIAAGADVKVLQHMLGHADAAMTLNIYGH 375


>gi|237718467|ref|ZP_04548948.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452174|gb|EEO57965.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 400

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 83/263 (31%), Gaps = 20/263 (7%)

Query: 89  VNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVL 143
             +  ++E+    + +     DF +  ++++ +    ++        ++   +L +M+ +
Sbjct: 126 EGTAKAYEATLHSMQKHLCKTDFPFAHLSSRLVIKYRDTLLEAGVGKNTIGFYLHNMKAV 185

Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFL 199
           ++    +  +         R + +    +    + ++       S  +     R  F F 
Sbjct: 186 YRRGCLELNLVFPSPFCNIRIRSEKTVKQSLPMKQVKSLANLSLSVGTPECLARDVFMFS 245

Query: 200 LYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258
           +Y+ G+   D        +   +   + QKTG ++ + +      LL         +   
Sbjct: 246 IYTRGMSFVDIAFLKKSDIFPGVIRYRRQKTGQLLEIGINRQIQSLLERYGDTSGDYLFP 305

Query: 259 NDKQKMNATQ--------FSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELM 308
              +                   K  + +    +    H  R   AT++ + G   H + 
Sbjct: 306 LVDESETPYSGYKKAYNKIRYTLKKISERIDINIPLRLHAARHCWATMARENGTPLHTIS 365

Query: 309 ATYGWKTVDQAETYTKGADRIRL 331
              G  +      Y K  DR  L
Sbjct: 366 ECLGHSSEKVTRIYLKELDRSVL 388


>gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       K    KAG+    S H +R   AT   ++G     +    G   V   
Sbjct: 97  HHAPEDALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|148260174|ref|YP_001234301.1| phage integrase family protein [Acidiphilium cryptum JF-5]
 gi|146401855|gb|ABQ30382.1| phage integrase family protein [Acidiphilium cryptum JF-5]
          Length = 412

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 113/368 (30%), Gaps = 40/368 (10%)

Query: 7   LPPFVTKERTRHGKII-YYFRKGHG-RRIRLPYPHESTFIPAYMSALT-------GSTPK 57
           LP F  +  +   K     +R   G RR+ L      +   A  +A         G  P 
Sbjct: 27  LPGFGVRVTSTGSKTYLAQYRGATGVRRVSLGKHGVISLADARNAARAILGQVASGGDPI 86

Query: 58  REYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
            E                 T++ LI+ +         A +      +     +       
Sbjct: 87  AERRAKDEAARQAQSEAAFTVEALIAAWVADRQESRRA-SYLKVAAAALRTHLAHLLTVP 145

Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
              +T +   + ++  K    P +  + L   R  F WA +++ +A+NP   +ERP R+ 
Sbjct: 146 ASAMTVRQAVAALDRVKAAAGPVAGNRLLAYARACFGWACKRQRLAMNPFAGLERPAREK 205

Query: 169 EGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFS 223
              R  T  ++   +++              L+ +  R  +        +          
Sbjct: 206 SRDRVLTDAEIGAIWRAAALLDYPAGQFTRMLMLTLGRRDEVASMRWTEIAADGLTWSLP 265

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--- 280
               K G    V L +    +L+  P  + + F+     +   + FS  FK    +A   
Sbjct: 266 ADRAKNGKSHVVHLSEPARGILSALPRFENSDFLFTTTGERPISGFSG-FKLAIDRAIEA 324

Query: 281 ----GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKGA---DRI 329
               G+ +   H  R+   T  A AG   H         +      A  Y +     +R 
Sbjct: 325 DLGRGIADWRFHDFRRAGVTWLAGAGFPPHVADKLLNHMSGSIQGVAAVYQRAEFLPERE 384

Query: 330 RLGIKNSR 337
           R  +    
Sbjct: 385 R-ALDAWA 391


>gi|325292868|ref|YP_004278732.1| phage integrase family protein [Agrobacterium sp. H13-3]
 gi|325060721|gb|ADY64412.1| phage integrase family protein [Agrobacterium sp. H13-3]
          Length = 357

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 81/343 (23%), Gaps = 30/343 (8%)

Query: 11  VTKERTRHGKIIY---YFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +T  + + G + Y     RK  GR +              A++        K   +    
Sbjct: 4   ITARKRKDGSVGYTAQILRKKGGRIVFREAKTFDRKREAEAWVRFRETEIDKPGALERLN 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               TL   I  Y K          ++                 D   I +  I +    
Sbjct: 64  ANRFTLADAIDRYVKEKGTMG---ATKDQVLRTIKTF--NLATMDCSDIRSDDIVTFANE 118

Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----------SVERPKRKTEGIR 172
                 P +   +++ +  +F  A     + ++P             +            
Sbjct: 119 LAEGRKPQTVGSYISHLSSIFSIARPAWGMPLDPVAIRDAQTVLRKLNTIANSESRTRRP 178

Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
              + D           + P ++    + +    S   +  +  ++         +    
Sbjct: 179 TLAELDKIMEYFTKRNQATPHVSRMDRVVAFAIYSTRRQEEIVRIEWEDLDEVHSRILVR 238

Query: 233 ITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285
                       +          I K                    F        + +  
Sbjct: 239 DLKHPGQKKGNDVWCEIPPEAMQIIKAMPKNGPRIFPYGTAGVGAAFTRACQFLEIEDLH 298

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
            H +R    +   + G T     +  G +T +  + YT+  +R
Sbjct: 299 FHDLRHEGISRLFEMGRTIPLAASVSGHRTWNSLKRYTQIRER 341


>gi|323699606|ref|ZP_08111518.1| integrase family protein [Desulfovibrio sp. ND132]
 gi|323459538|gb|EGB15403.1| integrase family protein [Desulfovibrio desulfuricans ND132]
          Length = 361

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 90/353 (25%), Gaps = 19/353 (5%)

Query: 12  TKERTR-HGKIIYYFRKGHGRRIRLPYPHESTFIPAY----MSALTGSTPKREYINSPRK 66
            KE  R  G + Y    G  +  R     +      +      AL  +  ++        
Sbjct: 3   YKEGKRWRGAVRYTPTDGSRQIRRTQLFDKMKDAEKWENKTREALELADAEKRKDMHRVG 62

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE 124
               +    + Y   A     +  S       F ++            +I+     + + 
Sbjct: 63  LEVLVGDWANAYMDYATAT-WSKGSCSDKRLAFRRLFEMTARPTQLVHEISPVVALNHLS 121

Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
             K   T ++A +   ++   +KW  R   +             +    R W        
Sbjct: 122 RLKQQTTGNTANRDRKNLAAAWKWGARYLGMDKTNPFRSVDKFPEQRHPR-WVPPLEDFR 180

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240
           K   +     R       ++  R  +  +     +      I              D   
Sbjct: 181 KVVDAATPLQRQLLLLAFHTAARRGELWKLKCSEVNLATGMIGFWTNKRRSGNAEFDELP 240

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNA-----TQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
              +L            + +    +         + W +      GV N   HG+R  SA
Sbjct: 241 ISDMLRAHLAEWMLMSRDEELVFGSRFEGLLDINNRWLRRLCADVGVRNFGYHGIRHLSA 300

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           +I+   GAT  E+      K++   + Y     +    +             +
Sbjct: 301 SIAIHNGATIVEVQQLLRHKSIATTQRYIHKVKKSTGAVDALDAAWRNDGDRE 353


>gi|189462246|ref|ZP_03011031.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
 gi|189431048|gb|EDV00033.1| hypothetical protein BACCOP_02932 [Bacteroides coprocola DSM 17136]
          Length = 271

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 79/261 (30%), Gaps = 23/261 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----SRKHTPSSAIQ 135
             A  +  ++   +  +           D  + ++  + IR   +     + +   +   
Sbjct: 8   DRAPTTLSTYLFTYRTLSEFIKAKFKVPDLAFGQLNEQFIRDYQDFILLEKGYAVDTLRG 67

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---- 191
           +L  ++ + + A ++ +         + PK+K    R   +E+ ++ +       +    
Sbjct: 68  YLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALNRENFEKLRDLEIPEKRRSHI 127

Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-- 248
             +  F F  Y+G   +D+     ++L  +       K           G +KLL     
Sbjct: 128 ITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKY--RRKKTDYLGRVKLLPEAVA 185

Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATA 304
                            +        KA    AG+  +   H  R   A++   + G   
Sbjct: 186 LIEKYRDDTRETLFPPQDYHTLRGNMKALRLMAGLSQDLVYHMGRHSFASLVTFEEGVPI 245

Query: 305 HELMATYGWKTVDQAETYTKG 325
             +    G   V   + Y + 
Sbjct: 246 ETISKMLGHSNVRTTQIYARA 266


>gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
 gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110]
          Length = 370

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 81/333 (24%), Gaps = 79/333 (23%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR---------------------- 112
           I  Y      G LA N+  ++        +                              
Sbjct: 31  IQRYLNYCRKGQLAFNTVNTYACRLLDFWQWLEYKSLDWQEVGLNELADFVNWYLLGGEV 90

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK------- 165
           ++ ++ +R  +  R  +P +    +T+++  +++   +  V       +           
Sbjct: 91  EVISEDVREIMSKR--SPRTVNLAITAVQGFYEFHTVEGRVDEKHFTKLAHGWGKRGGFL 148

Query: 166 -----------------RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208
                                     T E + Q         + RL    L  +G+R  +
Sbjct: 149 RGIVKSTPDKRKRIKVKEPKNFPGCLTDEQVTQLADACY-SYRDRLIVMLLRETGVRRGE 207

Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI--------------------ITVELPDGFMKLLAMT 248
                +  + +     + +                                    LL   
Sbjct: 208 LLGLHLVDVADFDSRGRIRIVRRDNNPNSATAKGTEREIPIIHNRDAVKETFHAYLLEEY 267

Query: 249 PIGKETFFINNDK---------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299
           P   E                 + M++ + +  F     + G+    H  R   AT    
Sbjct: 268 PPEAEKLEHGMLFVNLEGEYIGKPMSSARLNSLFYQLEERTGIKAHPHLFRHTFATRMLQ 327

Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
           AG     +    G K++   +  Y+   D + L
Sbjct: 328 AGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSL 360


>gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1]
          Length = 394

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/365 (10%), Positives = 97/365 (26%), Gaps = 52/365 (14%)

Query: 7   LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           L   +T+ ++  G     F    G+   +   + +         +     + E   +   
Sbjct: 24  LGKGITQRKS-DGLYQGRFVNRFGKTQTIYASNLNELRKR----MREEQYEDEKALNVVT 78

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           K  TL      +  +    +   ++R S+ +++ +I ++ G      +    +++ +   
Sbjct: 79  KDVTLDEWYEIWMNTCK-KNCRNSTRESYATHYKRIQKELGWRKLTSLNLIIMQNALNEL 137

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKS 184
             + ++          + + A+  + +  N    +         +  R  T  + + F  
Sbjct: 138 -VSDNARKNTKKIPVDMLEKAIDSDLLTKNVAKQLNTVISKEDKKERRVLTVSEAELFLG 196

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNIFSI 224
                S     F   + +G+R  + C    + +                           
Sbjct: 197 EAQ-SSFYYNLFVLAIETGMRIGELCGVQWKDIDFDKKVLYVRHTLCYFQKDGKYIFEMH 255

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------------- 267
             +      T+ L    ++ L    I K+       + +                     
Sbjct: 256 DAKTKNGRRTIPLTTRALEALKRQRIQKQKILFKGIETEEQYRDLVFVTKNNRPTQQFIV 315

Query: 268 --QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322
                        +       S H +R   AT + + G     L    G  ++      Y
Sbjct: 316 QEAIGAIVNRIRKEHPDYEMFSPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMTMDLY 375

Query: 323 TKGAD 327
               +
Sbjct: 376 CHVTE 380


>gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7]
          Length = 340

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 81/298 (27%), Gaps = 38/298 (12%)

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----------KHTPSSAIQ 135
            ++++  ++        R   +     I        +                  S+   
Sbjct: 29  RSIHTIETYRDGLTVFRRYITNVRKISIKKFLFTDCISELMLDYLGYLNSQGCEASTCNN 88

Query: 136 FLTSMRVLFKWAVRQEY------VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            L ++R    +A   +       ++ +    ++ PK++ + I+    + +        +G
Sbjct: 89  RLAALRAYLWYASDMDISLQSIALSASHVPFLKEPKKEKQIIQDEDMKALLAAPPDTQKG 148

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           ++ R+    L  + +R ++     +    L +        K     +V + D  +  L  
Sbjct: 149 NRDRMIMILLYDTAIRITELLELKISSLKLTSVPSIHIHGKGDKERSVSITDATLSHLKK 208

Query: 248 TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKA-----GVNKSAH--GVR 290
                              I      M+    S      A         + K  H    R
Sbjct: 209 YLRQFLSEMLPNQPLFYMKIKGSIAPMSPGNVSRIINKYADAIRPEHPNLPKHLHCHMFR 268

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
           +  AT     G     +    G  + +    Y      I +  +     +S +  + P
Sbjct: 269 RTRATGLYRNGVELEMISVILGHSSTETTRIYA--TPSIEMLGEAMNTANSTIPDETP 324


>gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451]
 gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451]
          Length = 391

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 72/251 (28%), Gaps = 19/251 (7%)

Query: 100 DQIIRKSGDFDY--RKITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWA 147
             ++   G  D    ++    +        +          + ++   +   +R     A
Sbjct: 123 KHLLFYCGKHDLSFDELDKDWLDGFKYYLTNEAKTKSDTALSRNTQSSYFNKVRAAINEA 182

Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207
            R+  +  NP   V   K KT      T +++             + AF F   +G+R  
Sbjct: 183 HREGIIRDNPLSQVTSIKAKTTKRVYLTLDEVNTLAHTECRYPVLKRAFLFSCATGMRWC 242

Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---- 263
           D  R     ++      +       ++         L            +    ++    
Sbjct: 243 DIHRLTWSEIETFNNHKRIIFDQVKLSHGDAKSLQYLDLPKFAESLLGPVKAAHERVFKG 302

Query: 264 -MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
              ++  ++     +  AG+  + + H  R   A I    G   + +    G   +   E
Sbjct: 303 LKYSSYMNVELLRWSLAAGISKHVTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTE 362

Query: 321 TYTKGADRIRL 331
            Y    ++ R+
Sbjct: 363 IYADIIEQRRM 373


>gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium]
 gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium]
 gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium]
 gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium]
 gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium]
 gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium]
 gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium]
 gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium]
 gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium]
 gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium]
          Length = 157

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T    +G     +    G   V     YT 
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157


>gi|22538122|ref|NP_688973.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|22535029|gb|AAN00846.1|AE014281_15 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
          Length = 375

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 91/364 (25%), Gaps = 52/364 (14%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R R  + ++ +      +         T   A   A       R    S   K  +L 
Sbjct: 5   RYRRRGNQNLWAYEIREEGKTVAYNSGFKTKKLAEAEAEPILQKLR--TGSIITKNISLP 62

Query: 73  WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
            L  E+        + +  ++  + S    + +  GD    +I     +  + +     S
Sbjct: 63  ELYQEWLDLKIMPSNRSDVTKKKYLSRKVTLEKLFGDKPISQIRPSEYQRIMNNYGQRVS 122

Query: 132 SAIQFLTSM--------------RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
               FL  +              +V+ +   +   +           K            
Sbjct: 123 --RNFLGRLNTGVKQSLQMAIADKVMIEDFTQNVELFSTVKSQDADSKYLHSEKAYLDLI 180

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----- 232
           +  + K  + +   P + + FLL +G+R  +      + +  +    KT +         
Sbjct: 181 NAVKDKFNYKKSVVPYIIY-FLLKTGMRYGELIALTWEDIDFDKGIFKTYRRFNSETSQF 239

Query: 233 ---------ITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMNATQ 268
                      V + +  +++L                                  +   
Sbjct: 240 VPPKNKTSIRIVPVDNECLEILKNLKIEQNQSNKELGLQNTNNMVFQHFGYPNSVPSTNG 299

Query: 269 FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
            +   +    +  +    +  G R    +     G     +    G K +    E Y   
Sbjct: 300 TNKVLRGIVQELNIEPIITTKGARHTYGSFLWHRGYDLGIIAKILGHKDISMLIEVYGHT 359

Query: 326 ADRI 329
            +  
Sbjct: 360 LEEK 363


>gi|253734957|ref|ZP_04869122.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727139|gb|EES95868.1| integrase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 392

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/322 (7%), Positives = 82/322 (25%), Gaps = 70/322 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK------- 127
            Y K     + ++N++ ++     +            ++++  +    +   K       
Sbjct: 51  RYLKYLDSVNKSLNTKKTYAYALKKFFVYLESKKICYKEVSFDNFVDFIRWMKTPFEYEN 110

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    + ++  + +   
Sbjct: 111 VLSYHRKGKSISPKTINLTITVVSNFYDYLYRSKKLDVNFYDFIHTESKYSKKYKSFMHH 170

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +    +                             + +   + L  +GLR  +   
Sbjct: 171 VNKDYGMLKNILKVKEPKKKLEVLTNVEVKKLLGAANNIRDKFLIQLLYETGLRIGEVLS 230

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 231 LRIDDIKFDFRKGHQIVLKNRFNSNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 290

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + M+ +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 291 SDYLFVKIKGRNVGEAMHYSDIYSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 350

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   +      Y    + 
Sbjct: 351 QERLGHSNIQTTINLYVHPTEE 372


>gi|228987438|ref|ZP_04147558.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772410|gb|EEM20856.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 319

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 79/291 (27%), Gaps = 34/291 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + +  ++T K IR+     +  
Sbjct: 21  LVKDFLIEKKAQGKAASTLQQYHWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + +     ++++R   ++    +       +           +R  T    +Q +   
Sbjct: 81  EMSNARVNGLMSALRSALEFCAEDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLI 140

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E        +++L + L  S    A    +        T++  T +         +L  
Sbjct: 141 DE---LIAQEKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 197

Query: 247 MTPIGKETFFINNDKQKMN------------------ATQFSIWFKAKATKA------GV 282
              + K      N + K                     + F+ W K  A           
Sbjct: 198 NPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKHLNKSVFNYWCKIFAKMLYEKEGKEF 257

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
             + H  R          G    +L +      +   ++Y K      +  
Sbjct: 258 KINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 308


>gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3]
 gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3]
          Length = 330

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 89/301 (29%), Gaps = 41/301 (13%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHI 119
            +    TL+  +               +   +   +        D        ++TT+  
Sbjct: 6   KKYPQLTLEQALDIVISGKRAEGCRDRTLKDYMKMWGYFTDWLFDNYEIEYLEELTTEMF 65

Query: 120 RSGVESRKHTP--------------------SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           R+ +   K+                      ++    + ++R L  +  R+E + +NP  
Sbjct: 66  RNYINYMKYDKKRYEGHKFIDSDKQGIGLCDTTININIRTLRALINYLYREELIEVNPIE 125

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            ++  ++  +    +  E++++           G +  +    LL SGLR  +     V 
Sbjct: 126 KIKLLRQDIDLTNSFNDEEIKEILRQPNLRDFVGFRDFVGINVLLDSGLRIQELMGLRVS 185

Query: 216 HLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA----- 266
            +      I  Q    K      V +     K+L       +  F  +     +      
Sbjct: 186 DIDFQTRFITIQANKSKNRKPRLVPVSTHVTKVLLQLINENQAHFKTDRVFLSSYGEPLG 245

Query: 267 -TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
              F+   K  A KAG+     +AH  R   A      G  A  L    GW  +     Y
Sbjct: 246 ANHFNKRLKYYAEKAGIKDKKVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRY 305

Query: 323 T 323
            
Sbjct: 306 I 306


>gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118]
 gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans]
 gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans]
 gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118]
          Length = 315

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 86/313 (27%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 67

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E   +   +  +RP          + E++ +  +     
Sbjct: 68  AGTQNQALAALLFLYREVLGVELPWMENLVRAKRP---RRIPVVLSAEEVARLLT--MLE 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
              RL    L  SG+R  +  R  ++ +        ++  K G    V  P      L  
Sbjct: 123 GSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQ 182

Query: 248 TPIGKETFFINND---------------------------------------------KQ 262
                      +                                              + 
Sbjct: 183 QRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGRH 242

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        ++   +AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 243 HVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQ 302

Query: 321 TYTKGADRIRLGI 333
            Y     R    +
Sbjct: 303 IYAHVLGRGASAV 315


>gi|2618954|gb|AAC48884.1| integrase [Phage 21]
 gi|2618966|gb|AAC48892.1| integrase [Phage 21]
          Length = 356

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 95/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYISIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F S        +      L +G R  D C      + +++  I  +KTG+        
Sbjct: 179 AIFDSVSRRQPYLKCGMLLALVTGQRLGDICNLKFSDIWDDMLHITQEKTGSKLAIPLNL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|300918412|ref|ZP_07135010.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
 gi|300414387|gb|EFJ97697.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 115-1]
          Length = 347

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 80/289 (27%), Gaps = 32/289 (11%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK   +K  + EY K     +L+ ++   +E     +          ++T   +++ + S
Sbjct: 46  KKTKNIKSYLDEYLKICQNRNLSPSTIGGYEKCLSAL-SALHKMHVSELTPAVLKNWIAS 104

Query: 126 RKHTPSSAIQFLTSMRV---------LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
           RK    +    L+ +R          L          A    +    P      + P+T 
Sbjct: 105 RKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVIDSSPNSDDYEVDPFTP 164

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------- 227
            ++       S      L F F   +GLR S+ C      L N   +   Q         
Sbjct: 165 AEISAIYQSCSYPEWENL-FRFAFNTGLRSSELCALRWPDLDNIAKTAHVQAASVVGVLK 223

Query: 228 ---KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKA----- 277
                     VEL    +  L                          +   + KA     
Sbjct: 224 GTKTKAGTRKVELNSEALAALQAQKQFTFMKSEFIFSDPKTGEPWANADAIRKKAWVPTL 283

Query: 278 TKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
            KAGV     +  R   AT     G     L    G K  +     Y K
Sbjct: 284 KKAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEMLFRNYGK 332


>gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 468

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 75/243 (30%), Gaps = 30/243 (12%)

Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-- 171
           ++ ++ R+ +++  ++P++A   L  +R +   A   E + +     ++  K        
Sbjct: 217 LSERNDRNLIKTGSYSPATADNLLRMLRGVAHHAWLSESITVETLERIKAIKLPRGSRQS 276

Query: 172 --RPWTKED------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-F 222
             R  +  +      +   ++   +G +    F  +  SGLR ++     +  +  N   
Sbjct: 277 SGRYLSYSELDKISAICLNQTNKIKGIRDNAIFWLMYESGLRRAEVVNLSLDDIDINRGT 336

Query: 223 SIKTQKTGTII----------------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                K                       ++       +  +            ++ +  
Sbjct: 337 IHVVGKGNKERYVPFSLESDLYRALSKWFDVRYKLQGNIFNSLFCVVNKHQQVVEKSLTT 396

Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              +   K    + G  +  S H  R   AT    AG     +    G  +V   + Y +
Sbjct: 397 QSLNDLCKQI-QRMGFERMVSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRYDR 455

Query: 325 GAD 327
            +D
Sbjct: 456 RSD 458


>gi|109948086|ref|YP_665314.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
 gi|109715307|emb|CAK00315.1| bacteriophage-related integrase [Helicobacter acinonychis str.
           Sheeba]
          Length = 378

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 79/303 (26%), Gaps = 26/303 (8%)

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-- 109
                  E      +   T+   +  +        L   S  S E  F+ I    G    
Sbjct: 70  NKRLKNAEKQTIKLQARITILEALKRFLGLKI--GLKNTSLHSLEIVFNSIFSAMGLKES 127

Query: 110 -DYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              +KIT + I    E   +++  ++      +++    +   + Y+  NP  +V     
Sbjct: 128 AKLQKITKEAIAKYHEQALQRYKKNTLKTQHANLKSFLAFCESEGYLEKNPYFAVTLKNA 187

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------- 219
           K          +  +     +     +        +G+R  +      + +         
Sbjct: 188 KEAKKIEPFSLEEVEAIIKNAPSLSLKAFLMVAFLTGMRTGEQLALTWEDIDFDHQTISI 247

Query: 220 ------NIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW 272
                        +   ++  V+L +   K+L                      + F   
Sbjct: 248 NKSLNEWGQITSPKNQNSVREVDLLEPAAKILKELKKSEPAGKKFVFIGMPRRTSVFQRR 307

Query: 273 FKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA----ETYTKGAD 327
           F+       +     +  R   A++    G     +    G K ++        Y    D
Sbjct: 308 FRELLKALDLKDRKLYTTRHTFASLMLSQGEEPMWVSKMLGHKDLNTTYGAYSHYIPQQD 367

Query: 328 RIR 330
           R R
Sbjct: 368 RER 370


>gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
 gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus
           parauberis NCFD 2020]
          Length = 377

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 107/359 (29%), Gaps = 50/359 (13%)

Query: 14  ERTRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + ++G        G      +RIR+      +   A    L       E     R    
Sbjct: 4   RKAKNGTWTVDVSGGIDPVTFKRIRIVRKGLKSKKDAIE--LEYHLRVVELKEKNRDTFV 61

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           T   L S   K  +     ++   +  + +   I       D +K+T +HI    ES K 
Sbjct: 62  TSDMLFSMLEKEDNQNHRKISYLTTQRNNYDRHIKTYFQQVDMKKLTYEHIYRFRESLKE 121

Query: 129 -----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      + ++  + +  ++ +F   +R E +  NPC ++ +   K   +  W  E
Sbjct: 122 KSTKQNSEEKLSNNTINKIMILVKKMFDSGIRNELITKNPCQNLRKLPIKKPELNFWGIE 181

Query: 178 DMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           +  +FKS  +E      L F    ++G+R  +        +     +I   K+   +   
Sbjct: 182 EYLKFKSLITEDEYQYNLFFTLAYFTGMRMGEILALTWNDINFYTSTIHVTKSVYYVHKT 241

Query: 237 LPDG-------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIW----------- 272
                              KLL      K        +   +     +            
Sbjct: 242 NHVNSTKTRAGTRYITLNQKLLNTLKEWKNKQGEILSQFTNSTQNLQVIQSTPVTVTKNM 301

Query: 273 ----FKAKATK-AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               FK    +   +     H  R   A++  + G     +    G  ++    +TY+ 
Sbjct: 302 IDKKFKQILQRDPNLKTIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360


>gi|313764266|gb|EFS35630.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL013PA1]
 gi|313816357|gb|EFS54071.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA1]
 gi|314915743|gb|EFS79574.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL005PA4]
 gi|314917889|gb|EFS81720.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA1]
 gi|314920271|gb|EFS84102.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL050PA3]
 gi|314957876|gb|EFT01979.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL002PA1]
 gi|315098723|gb|EFT70699.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL059PA2]
 gi|315101508|gb|EFT73484.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL046PA1]
 gi|327450593|gb|EGE97247.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA3]
 gi|327454068|gb|EGF00723.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL083PA2]
 gi|328753150|gb|EGF66766.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL025PA2]
 gi|328754011|gb|EGF67627.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL087PA1]
          Length = 420

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 107/369 (28%), Gaps = 51/369 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y + G  +R+R      +         L            PR    TL   ++ +  +  
Sbjct: 28  YDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGG-LTLNQWVNIWLATKQ 86

Query: 84  WGS-LAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSM 140
               +   + +     Y   I  K G    +++T + I+  + +      +  +    +M
Sbjct: 87  ASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKTM 146

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED--MQQFKSFWSEGSQ 191
                 AV+   V +NP   +  P+++       T  I  W++    M ++ +       
Sbjct: 147 NAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECELH 206

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------IT 234
            R      +  GLR ++            +  +  ++                      T
Sbjct: 207 DRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNRT 266

Query: 235 VELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKA----KATKAG 281
           + LP+ + +   +                 F+      +  + ++  ++        K G
Sbjct: 267 LMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKEG 326

Query: 282 VNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
                       H  RK  A+  A  G      M+  G  +      YT   AD+ R  +
Sbjct: 327 QEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKAL 386

Query: 334 KNSRRISSV 342
           +    +   
Sbjct: 387 EGLSNVYEH 395


>gi|301155089|emb|CBW14552.1| DLP12 prophage; predicted integrase [Haemophilus parainfluenzae
           T3T1]
          Length = 304

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 19/272 (6%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-- 122
           +K P   +  +  + + A           +   +          +    IT ++I     
Sbjct: 6   KKPPKLFEEALLLFVEDAKLKK----DFDTNRRHAIYWRSVFSGWKLSDITGENIMDNLP 61

Query: 123 ----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
                  +  +PS+  ++ TS+  +   A +  ++   P +       + +    W  ++
Sbjct: 62  TYSTTHKKALSPSTKNRYRTSILRVLSLAYKNGWIDRIPYVKK---FVEPKVRVRWITKE 118

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIIT 234
                      +  +    F L++G R ++        +  +                  
Sbjct: 119 QATTLISNLNLAWMKNVCSFALFTGARMTEILSMTWDKVDFDRSIAIVSNDVAKSGKARA 178

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGV-NKSAHGVRKF 292
           + L +  + LL      +   F+ +        +     F     K+ + N   H +R  
Sbjct: 179 LPLNNTALDLLQKLYQNRRNEFVFHRGTDKQIGRIDWHDFHQALEKSNIQNFRFHDLRHT 238

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324
            A+    AG   + L    GW+T++  + Y  
Sbjct: 239 WASWHVQAGTPLYTLKEMGGWETLEMVKKYAH 270


>gi|229061538|ref|ZP_04198882.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
 gi|228717772|gb|EEL69422.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus cereus AH603]
          Length = 322

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 77/290 (26%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+    +   + +  ++T K IR+     +  
Sbjct: 24  LVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHQHFENKNLVELTRKDIRNLSIIFQEM 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 84  RMSNARVNGLMSALRSALEFCADDDDYDYEFNVGSRVRGLPKNPIREITFITEDQINWLI 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +         ++  T +         +L  
Sbjct: 144 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEGLKEQYYTNVVRGKRGKKFRLYY 200

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------------------- 285
              + K      N + K       +       +  +NKS                     
Sbjct: 201 NHRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKRLNKSVFNYWCDIFAKMLNEKEGKEF 260

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H  R          G    +L +      +   E+Y K      + 
Sbjct: 261 KMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 310


>gi|7620530|gb|AAF64651.1|AF200320_1 IntA [Bradyrhizobium japonicum]
          Length = 388

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 74/342 (21%), Gaps = 50/342 (14%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
            G  +R    +        A          +             L      + K     +
Sbjct: 24  TGKRKRKWHSFTGTK---RAAQLECARLISETSDGAYVEPSKLALAQFFDRWLKHIKP-N 79

Query: 87  LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQ 135
           ++  +   +E      I+   G     K+    I                   +P +   
Sbjct: 80  VSPRTHERYEQIATKNIVPLLGAKILSKLQPIDISEAYGKALENGRRDGKGGLSPRTVHH 139

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRL 194
               +      A R   +  NP   +E+  R     +P  T +      +F +   +  L
Sbjct: 140 MHRVLFSALGQAERWRLIPRNPAALLEKRDRPKIERKPVRTIDANSTAAAFDAARERAYL 199

Query: 195 AFEFLL-YSGLRCSDSCRAGVQHLQ------------------------------NNIFS 223
           +   L    GLR  +      + +                                 I  
Sbjct: 200 SPVILATLCGLRRGEITALRWRSVDLDNGQLAVVASTEQTDAGTIREKEAKSGRARTIAM 259

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                        +    +  L +            D   +     +        +    
Sbjct: 260 PAMAVEELRRWRVMQAEELLRLGVRGDDDRHVVTQADGSPLQPRSLTHSVSEFLKE--WR 317

Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324
            + HG+R   A+    +      +    G  ++      Y+ 
Sbjct: 318 VTLHGLRHSHASHMLASNIHPKIVQERLGHSSIAITMDIYSH 359


>gi|291538944|emb|CBL12055.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4]
          Length = 368

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 91/324 (28%), Gaps = 55/324 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------------DFDYR---KI 114
           TL     ++       S +  ++I++                        DF      +I
Sbjct: 43  TLPPFCKQFFIGIEATS-SSRTKIAYAYDIGCFFDYLHATNPVCAKMDITDFPISILNEI 101

Query: 115 TTKHIRSGVESRKH-----TPSS-----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           T   I   +   K+     T  +       + L+++R  + +  +   +  +P + V+ P
Sbjct: 102 TPMDIEEYLSYLKYYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMP 161

Query: 165 KRKTEGIRPWTKEDM---------------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           K   + I     +++               +Q +       +       LL +G+R S+ 
Sbjct: 162 KIHEKNIIRLDVDEVAKLLDEVESGENLTARQQQYHEKTKIRDLAMMTLLLGTGIRVSEC 221

Query: 210 CRAGVQHLQNNIFSIKTQKT-----------GTIITVELPDGFMKLLAMTPIGKETFFIN 258
               ++ +      IK  +                 +       + +          F++
Sbjct: 222 VGLDMEDVDFKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSINALFLS 281

Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
              ++++        K  +       + + H +R    T         + +    G K V
Sbjct: 282 LQNKRISVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDV 341

Query: 317 DQAE-TYTKGADRIRLGIKNSRRI 339
           +     Y    D  R       ++
Sbjct: 342 NTTRKHYAALEDERRRSAAKYVKL 365


>gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4]
 gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4]
          Length = 325

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 86/280 (30%), Gaps = 25/280 (8%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESR-KHT 129
             LI +++ +      AV++  ++ +   + +          +   + + + V +   + 
Sbjct: 27  AELIGKFQAALRAEGCAVSTVRTYGTLAGEFLSFVDTRGRLTECDARTVEAFVATLSGYQ 86

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------ 183
             +  Q L ++R   ++A RQ  V  +   +V   K       P   +     +      
Sbjct: 87  AKTVEQKLCAVRSFLRYAERQGQVNADVLKAVPAVKSSKHARVPSVWDPADVARILDAID 146

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DG 240
                G +       +   GLR  D  R  +         +  ++T T   ++LP   D 
Sbjct: 147 QGNPSGKRDYAIITLVTRLGLRSIDVKRLELDDFDWPGNRLWVRQTKTGHRIQLPLLKDV 206

Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--------ATQFSIWFKAKATKAGVNKS------A 286
              ++     G+ +        +                     A  A V  S       
Sbjct: 207 GWAIINYIRHGRPSTDCRQVFLRHTTPVGPFSDQDHLHQILCKHARVARVTLSDHRRHGM 266

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           H +R   AT   + G    E+    G ++V     Y K +
Sbjct: 267 HSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVYLKTS 306


>gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|254430168|ref|ZP_05043871.1| site-specific recombinase, phage integrase family protein
           [Cyanobium sp. PCC 7001]
 gi|197624621|gb|EDY37180.1| site-specific recombinase, phage integrase family protein
           [Cyanobium sp. PCC 7001]
          Length = 261

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 67/243 (27%), Gaps = 24/243 (9%)

Query: 99  FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
              +     +     +     R  VE+    P S  + LT+   L++WA       +   
Sbjct: 10  LRMLDPAIAEDAVADL-----RDLVEAGTLAPRSFNRRLTAWSALWRWASEANRSGVTGI 64

Query: 159 LSVERPKR------------KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
                P+R                +   T        +      +  +        G+  
Sbjct: 65  ARNVWPRRALLHAPKVARALTEPELAAVTGTVAVAAAAGDCTARRDLVKLRASFLLGVCV 124

Query: 207 SDSCRAGVQHLQNN-------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           S+        ++         I + K  K  TI         ++ L         F    
Sbjct: 125 SELRSLRWGDVEPVEGGGLVSIRNGKGGKARTIRVSMDTVALLESLGRGDADAWLFLNPA 184

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
               ++    +  F     KAGV+   H +R   AT +  AG  A  L AT G  +    
Sbjct: 185 GTAPLSRQAIADRFSRWGKKAGVHLHPHRLRHSHATSAIRAGCDAFVLSATLGHASTATT 244

Query: 320 ETY 322
             Y
Sbjct: 245 AHY 247


>gi|77414324|ref|ZP_00790481.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 515]
 gi|77159616|gb|EAO70770.1| prophage LambdaSa1, site-specific recombinase, phage integrase
           family [Streptococcus agalactiae 515]
          Length = 330

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 85/301 (28%), Gaps = 22/301 (7%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
               + L       + +        T   L  EY K      +  +++  +      I  
Sbjct: 10  AQKKAGLILQEKIEDRLAIRNHSEMTYGELKKEYLKQWIPT-VKDSTKRGYLVSDSHIAT 68

Query: 105 KSGDFDY-RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
              D     K+T + IR  ++     ++     +    +  +F +A++ +Y+  NP  +V
Sbjct: 69  VLPDDTIINKLTKRDIRLIIDKLLKHNSYHVTHKCRKRLHAIFSYAIQMDYMTSNPTENV 128

Query: 162 ERP----KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQ 215
             P      K E +   T  ++    +   +  +  LA    F+  +G+R  +       
Sbjct: 129 LVPKPKDDYKPEKVLYLTSNEVYDLCNRMIDNDEQTLADIVLFMFLTGVRYGELACLTYD 188

Query: 216 HLQN----------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
            +              F+ +   T               +      ++            
Sbjct: 189 KIDFENKEILINATYDFNTREITTTKTKKSTRKISVSDNILDIVNKQKKXSSFVFPNSNG 248

Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               + +   +    G +   H  R    +  A+ G   + +M   G          Y+ 
Sbjct: 249 VPILNAYINKRLKIYG-DYHTHLFRHSHISFLAEKGIPLNAIMDRVGHSDPKTTLSIYSH 307

Query: 325 G 325
            
Sbjct: 308 T 308


>gi|331672503|ref|ZP_08373293.1| putative integrase for prophage [Escherichia coli TA280]
 gi|331070409|gb|EGI41774.1| putative integrase for prophage [Escherichia coli TA280]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       E   +      T+  L   +  S  +  LA  ++  +  +   ++   G   
Sbjct: 6   VAKVWQNYELEKAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVL 65

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              +  + +R  ++ R   + + A   L S+  ++ W   + YV  NPC  V    + T 
Sbjct: 66  ADNVKIEQVRIFMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTL 122

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R     D Q    +     Q R+A E       R  D      Q + +    I+  KT
Sbjct: 123 KARTVYITDEQYAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKT 182

Query: 230 GTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKAT----KAG 281
           GT    E        + +         E         K+ A   + W+         KAG
Sbjct: 183 GTKQIKEWSPRLRTAIQLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAG 242

Query: 282 VN--KSAHGVRKFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
           V    + H +           G +       +     G KT +Q   Y + 
Sbjct: 243 VPFGCNFHDI--------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 285


>gi|296162873|ref|ZP_06845654.1| integrase family protein [Burkholderia sp. Ch1-1]
 gi|295886910|gb|EFG66747.1| integrase family protein [Burkholderia sp. Ch1-1]
          Length = 434

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 104/349 (29%), Gaps = 38/349 (10%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPR---------KKPTTLKWLISEYRKSAHWG 85
           L +        A +          + ++  R          +  T      +Y   A   
Sbjct: 70  LSFGMSVRLAEARLLLERARREVEQGVSPSRSKVEKRVEAAEAMTFGKWAEKYFAEA--- 126

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRV 142
           +LA ++R   +S +D+ +  + G     +IT   +    E  K   ++A  +Q    +  
Sbjct: 127 TLAESTRAMRKSVYDRNLATEFGRLKLEEITPSRLLMRCEKIKERGAAAPAVQARDIVLQ 186

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           ++++   +     NP   +      T   R             +           RLA +
Sbjct: 187 VYRFVQARGLKVANPAEDIRPSAIATFKPRDRALTPSEIHVFFKGLERTPTLPTLRLAVK 246

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG-- 251
           F+L + +R S+   A    +              K G    V L    + +L        
Sbjct: 247 FMLLTLVRKSEFILANWNEVDFCAAIWTIPKDRMKAGRAHNVYLSQQALDILVTFKTCFG 306

Query: 252 ---KETFFINNDKQKMNATQFSIWFK---AKATKAGVN----KSAHGVRKFSATISADAG 301
                       +  ++A   +           ++G       S H +R+ ++T   +AG
Sbjct: 307 ASSYLHPGRYESELPISAATLNRVIDSTVRLNRESGAPDFESFSVHDLRRTASTQLHEAG 366

Query: 302 ATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRISSVVDSDDP 348
             +  +      +       Y K   A++ R  ++    +       DP
Sbjct: 367 FNSDWIEKCLAHEQRGVRAVYNKAEYAEQRRAMLQTWADMLEGWIERDP 415


>gi|241764269|ref|ZP_04762300.1| integrase family protein [Acidovorax delafieldii 2AN]
 gi|241366392|gb|EER60914.1| integrase family protein [Acidovorax delafieldii 2AN]
          Length = 460

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 109/333 (32%), Gaps = 35/333 (10%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKK--PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              A  S   G +P R  +    +     T      +Y   A    LA ++R   +  +D
Sbjct: 85  LTRARKSLERGESPSRTKVEKRIEANEALTFGKWAEKYFSEAE---LAESTRAMRKYVYD 141

Query: 101 Q-IIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAI 155
           + +  + G     +IT+  + +  E  K      P+   + +     ++++   +     
Sbjct: 142 RNLATEFGRLKLEEITSARLMARCEKIKERGAEAPAVQSRDIVL--QIYRFIQARGVKVE 199

Query: 156 NPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSC 210
           NP  ++            R  +  ++ +F     E    +  RLA +F+L + +R  +  
Sbjct: 200 NPAEAIRPSAIATFKARDRALSPVEIHKFFRALEEVASAATLRLAVKFMLLTMVRKGEFI 259

Query: 211 RAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           +A    +     +        K G   TV L    + +L             +  +  + 
Sbjct: 260 QARWDEINFETATWTIPKERMKAGRSHTVYLSYQAVDILVAFKACYSASPYLHPGRYESD 319

Query: 267 TQFSIWFKAKATKAGV-----------NKSAHGVRKFSATISADAGATAHELMATYGWKT 315
              S     +    GV             + H +R+ ++T+  +AG ++  +      + 
Sbjct: 320 FPLSNGTLNRLLVGGVEVIRKRGEDFEPFTVHDLRRTASTLLHEAGYSSDWIEKCLAHEQ 379

Query: 316 VDQAETYTKGA---DRIRLGIKNSRRISSVVDS 345
                 Y +      R R+    +  + S + +
Sbjct: 380 KGVRAIYNRAEYAQQRRRMLQDWADMVDSWIST 412


>gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 342

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 84/307 (27%), Gaps = 41/307 (13%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHI---RS 121
             +  Y         + ++  S+        R            F + + T   I     
Sbjct: 15  EFLDIYM--VKQVGRSPDTIESYRDALTIFRRYVLNELNISITKFTFAQCTRNCIFGFLE 72

Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWT 175
            + ++ + P +  Q L +++    +A  ++    +  L +      + P  +   +    
Sbjct: 73  YLAAQGNKPGTRNQRLAALKSYLWFAADKDVTLQSIALELSRIPQLKNPVTEKFVLSEEA 132

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232
              +    +    G + R     L  S +R ++     V  +    +N +     K    
Sbjct: 133 LNAIFIQPASSRMGLRDRTIMILLYDSAVRLAEILNLRVNDICLNQDNPYIRVMGKGSKE 192

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKA- 280
             V +    +K +        +    +              KM+      + +  A KA 
Sbjct: 193 RVVAINIKTVKHVNQYLDVYRSRDNPDSNLLFYTVIKGRAGKMSEGNVERFIQQYADKAR 252

Query: 281 ----GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334
                +      H +R+  AT     G     +    G   +D    Y        +  +
Sbjct: 253 ESCPDIPLRVYPHMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYYAKPSLA-MMRE 311

Query: 335 NSRRISS 341
               + +
Sbjct: 312 AMDSVEA 318


>gi|257413996|ref|ZP_04744923.2| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
 gi|257201563|gb|EEU99847.1| site-specific recombinase, phage integrase family [Roseburia
           intestinalis L1-82]
          Length = 368

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 91/324 (28%), Gaps = 55/324 (16%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------------DFDYR---KI 114
           TL     ++       S +  ++I++                        DF      +I
Sbjct: 43  TLPPFCKQFFIGIEATS-SSRTKIAYAYDIGCFFDYLHATNPVCAKMDITDFPISILNEI 101

Query: 115 TTKHIRSGVESRKH-----TPSS-----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           T   I   +   K+     T  +       + L+++R  + +  +   +  +P + V+ P
Sbjct: 102 TPMDIEEYLSYLKYYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMP 161

Query: 165 KRKTEGIRPWTKEDM---------------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209
           K   + I     +++               +Q +       +       LL +G+R S+ 
Sbjct: 162 KIHEKNIIRLDVDEVAKLLDEVESGENLTARQQQYHEKTKIRDLAMMTLLLGTGIRVSEC 221

Query: 210 CRAGVQHLQNNIFSIKTQKT-----------GTIITVELPDGFMKLLAMTPIGKETFFIN 258
               ++ +      IK  +                 +       + +          F++
Sbjct: 222 VGLDMEDVDFKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSINALFLS 281

Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
              ++++        K  +       + + H +R    T         + +    G K V
Sbjct: 282 LQNKRISVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDV 341

Query: 317 DQAE-TYTKGADRIRLGIKNSRRI 339
           +     Y    D  R       ++
Sbjct: 342 NTTRKHYAALEDERRRSAAKYVKL 365


>gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
 gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787]
          Length = 415

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 94/370 (25%), Gaps = 59/370 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRL---------PYPHESTFIPAYMSALTGSTPKREYINS 63
           + + + G+  + +    G+   +         P P      P+                 
Sbjct: 33  EYQRKDGRYRFRYIDEDGKEKNVYSWRLDKNDPMPKGKKREPSLREKEKQIEADLFDRIV 92

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
                 T+  L+ +Y        +  N+   +++  + + ++  G+    K+     ++ 
Sbjct: 93  TNGGNYTVLELVEKYVSLK--TGVRHNTVAGYKTVINMLKKESFGNLRIDKVRLSDAKAW 150

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTK 176
           +   +       SS       +R  F+ AV  + +  NP            +      T+
Sbjct: 151 LIKLQQIDGRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSVTREAITR 210

Query: 177 EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +  +    F  E    S+   A   L ++GLR S+ C   V  ++     IK        
Sbjct: 211 KQQRDLLKFIQEDKHFSRYYDAIYILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRT 270

Query: 234 TVELPD---------------------GFMKLLAMTPIGKETFF-------------INN 259
                                       F +++      K                    
Sbjct: 271 AQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIITNRKTPKVEPMVEGYAGFLFLDKNDMP 330

Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                         +       +     + H  R    +  A +G     L    G   +
Sbjct: 331 MVALHWEKYLEHIIQKYNKIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 390

Query: 317 DQA-ETYTKG 325
                TYT  
Sbjct: 391 SVTLNTYTHV 400


>gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155]
 gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
             +        +       +  L   + +  +       +  +     S  +K    KAG
Sbjct: 295 CYLPNALERKSVNKGKEWAWFWLFPASTLSIDPRADVLRRHHVAPGYLSNHYKNAIEKAG 354

Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           ++KSA  H +R   AT   + G     L    G   V+  + YT    + +
Sbjct: 355 ISKSATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGKHK 405


>gi|218262144|ref|ZP_03476706.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223578|gb|EEC96228.1| hypothetical protein PRABACTJOHN_02379 [Parabacteroides johnsonii
           DSM 18315]
          Length = 408

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 89/270 (32%), Gaps = 22/270 (8%)

Query: 80  KSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP--- 130
           +       A  +   F++                D   ++I+   I+  +   K      
Sbjct: 122 RELIGKDYAKVTISRFDTCLRYFKEMALKKYHLKDIPMKEISHAIIQDYIHFLKTRKDLQ 181

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            ++ I+++  ++ +   A+  +++  +P +++   +++       TKE+++  ++   + 
Sbjct: 182 ENTVIRYMKVVKKITNMALANDWMEKDPFINIRFHEQEVHK-EFLTKEELETMQNKVFDI 240

Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242
            +    R  F F  ++GL   D      +HL ++       +     T  + +  +    
Sbjct: 241 PRLDLVRDIFLFQCFTGLAFIDVSELKAEHLVSDNQGNLWIRKARQKTKVMCNIPLLDIP 300

Query: 243 -KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI-SA 298
             +L                      + + + K  A    + K  + H  R   +T+ + 
Sbjct: 301 LAILEKYDGHPLAKKKGTLLPVPCNQKLNNYLKEIADLCSIKKNLTTHTGRHTFSTVVAL 360

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328
               +   +    G       + Y K  D+
Sbjct: 361 ANNVSLENVAKMLGHTNTKMTQRYAKVLDQ 390


>gi|187775762|ref|ZP_02797826.2| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188024688|ref|ZP_02997205.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189403511|ref|ZP_03007113.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|187771271|gb|EDU35115.1| integrase [Escherichia coli O157:H7 str. EC4196]
 gi|188017283|gb|EDU55405.1| integrase [Escherichia coli O157:H7 str. EC4113]
 gi|189360208|gb|EDU78627.1| integrase [Escherichia coli O157:H7 str. EC4486]
 gi|315274270|gb|ADU03678.1| putative integrase [Enterobacteria phage VT2phi_272]
          Length = 414

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 87/325 (26%), Gaps = 22/325 (6%)

Query: 22  IYYFRKGHGR-RIRLPYPHESTFIPAYM-----SALTGSTPKREYINSPRKKPTTLKWLI 75
            Y +R      R+ +     ++   A +      AL       +   +P     TLK  +
Sbjct: 66  QYRYRWNGKPVRLTVGRYPSTSLKDARVIVGEMRALYMKGVNPKNYFAPSDGELTLKECL 125

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
            ++    +   L  N++  + S   + +  +        I         + ++      A
Sbjct: 126 DQWWD-KYVTDLKPNTQTLYRSVVYNTMYTQFEGSPVASIPVSAWARFFDKQESLNKKKA 184

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQFKSFWS 187
              L  +R +  W + ++ +     L        ++P   +  +       +        
Sbjct: 185 RVLLLQLRSVINWCISRQLIPSCELLKLSVKNIGKKPDVGSRVLTYTELAKIWLALENSK 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSC------RAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +  ++  + LL  G R S+              +                 V      
Sbjct: 245 VVTSNKVLHQLLLLWGARLSELRLATASEFNMEDLVWTTPKEHSKMGNIIRRPVFTQVKP 304

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
                +       F      + ++ +  +++ K    K  +     H  R+   T  +  
Sbjct: 305 YIERLLNAGFDVLFPGQEIDKPIDRSSANLYMKKLREKIDIPEWRTHDFRRSLVTNLSGE 364

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           G   H      G +       Y K 
Sbjct: 365 GIMPHVTEKMLGHELGGVMAVYNKH 389


>gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium]
          Length = 180

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 9/133 (6%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             +     +G           Q++       +  +        + D  ++L        +
Sbjct: 55  WVWLPYALAGKYPQAGRSLEWQYVFPARSLSREPRPREAREQNVADATVEL-------AQ 107

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
                  +  ++ T           +AG+      H +R   AT   +AG     +    
Sbjct: 108 DPANQVRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELL 167

Query: 312 GWKTVDQAETYTK 324
           G   V     YT 
Sbjct: 168 GHSDVSTTMIYTH 180


>gi|37678461|ref|NP_933070.1| phage integrase family site specific recombinase [Vibrio vulnificus
           YJ016]
 gi|37197201|dbj|BAC93041.1| site-specific recombinase, phage integrase family [Vibrio
           vulnificus YJ016]
          Length = 434

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 107/384 (27%), Gaps = 46/384 (11%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKRE 59
            +     + G   +  R       R   L      +   A ++A         G  P  E
Sbjct: 43  GLYFCVRKQGSPYWMIRYTTAKGRREATLGQFPLMSLADARIAAAYFRKEVRDGIDPLLE 102

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T+  L  ++ ++     L  + +I +  Y   I    G     ++T + +
Sbjct: 103 KQKIELPDIETVDQLFHDWYRTDLSRRLK-HPKIPYRVYTKDISPVIGIKCIAEVTARDV 161

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPKRKTE 169
           R  +E  + +  P+ A   L  M+ LF+ A++ +    NP           VE  K +  
Sbjct: 162 REVLERIRESNRPTIANDTLMYMKQLFRHAIKLDLTLNNPAAAFTVDDAGGVESSKDRML 221

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----- 224
                            S G    LA    L  G+R S+ C A  + +            
Sbjct: 222 SKEEIHYAFSVFHTHINSFGRDNYLACCLFLVLGVRKSELCEAMWREMDLTTGVWDLPKE 281

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-AT 278
                                 +++ A            + +  M     +         
Sbjct: 282 RSKTGVPISIPLPRQAIAWFNELQIRACGSPYVFPARRASHRPHMGPDTLNRAISKLFGR 341

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
           + G  K            + H +R+   +++A  G   +        K       Y +  
Sbjct: 342 EPGRKKQPPNKMGKLEHFTVHDLRRTFRSLAASLGIAGNVAERCLNHKLKGVEGIYDRHD 401

Query: 326 -ADRIRLGIKNSRRISSVVDSDDP 348
             +  R+  +    +   + + +P
Sbjct: 402 YFEERRIAHQTVADVVEPLVNFEP 425


>gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes
           DSM 1740]
 gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes]
          Length = 363

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 85/288 (29%), Gaps = 38/288 (13%)

Query: 92  RISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVR 149
              +E      +   G    ++I  + +     + +   + +S      ++   F +  +
Sbjct: 81  IKLYER-----LSYLGLASMKEIDEEMLSDYLVIATSGLSDASKKNHRIALLSFFGYIDK 135

Query: 150 QEYVAINPCL----------------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
           Q                           + P    E       E +  ++      ++ R
Sbjct: 136 QNQDDQGNSHLFRIELKNWGGLRGKSGEKLPAYMNEKELERFLEALDSYEFSLDIRARNR 195

Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-----------LQNNIFSIKTQKTGTIITVELPDGFM 242
           L  + +LY+G+R S++    ++            ++      +          +  D ++
Sbjct: 196 LVIKLILYTGIRVSEALGLRLKDFLPDQDSYLLKIRGKGNKERMVMVKKEPIQKELDEWL 255

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +       ++  F N    ++     S   +     AG+ K    AH +R   AT+   
Sbjct: 256 GVRQSLNAQEDWLFCNQKGGRLTQAYVSRIVEQILLWAGIRKEKNGAHMLRHSFATLLYQ 315

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346
                  +    G   ++ +  YT    +R+R        ++     +
Sbjct: 316 KKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMDDLTPKKKEN 363


>gi|331006889|ref|ZP_08330138.1| Phage like integrase [gamma proteobacterium IMCC1989]
 gi|330419305|gb|EGG93722.1| Phage like integrase [gamma proteobacterium IMCC1989]
          Length = 419

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 96/327 (29%), Gaps = 28/327 (8%)

Query: 35  LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94
           +     ST     +   T    +            +LK +   Y        L V +   
Sbjct: 85  IALADRSTEGDLKLEIETEQNHELAKQREKDSANASLKTIFESYLAD---KDLKVGTVYD 141

Query: 95  FESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYV 153
           +     Q   +  D     I  + I      R K +P+ A   +   R ++ +      +
Sbjct: 142 YRKTMQQTFSEYLDKPINTINRELILKIYRKRSKESPARANNAMRVFRAVYNYHRAVTRL 201

Query: 154 AINPCLSVERP------------------KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
                L  E P                      E +  W +       S ++ G      
Sbjct: 202 NNGDYLLPENPVSILNETKVIKKVARRSTYIPRETLPAWFEAVRSLKGSRFNSGDVISDY 261

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKE 253
           F F+L +G R  ++     +H+     + +   T     + + +    + L+ +    K 
Sbjct: 262 FIFVLLTGTRREEARMLKKRHVDLKRKTFRLVDTKNREVVELPMSQPLVDLITLRMSEKG 321

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
            +       +     F    +    + G+N S H +R+  AT++     + + +      
Sbjct: 322 EYLFTGQDSEKPFNSFKRPLEHLQKEVGLNFSTHDLRRTFATVAESLDISTYTIKKLINH 381

Query: 314 KT---VDQAETYTKG-ADRIRLGIKNS 336
           K    +D    Y     DR+R   +  
Sbjct: 382 KINDALDVTAGYVIVDLDRMRKATEKI 408


>gi|323139026|ref|ZP_08074085.1| integrase family protein [Methylocystis sp. ATCC 49242]
 gi|322395686|gb|EFX98228.1| integrase family protein [Methylocystis sp. ATCC 49242]
          Length = 426

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 106/368 (28%), Gaps = 44/368 (11%)

Query: 19  GKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSPRKKPT---TL 71
           G  I  +R    R  RL              A    L     +    ++ R +     T+
Sbjct: 40  GAYIIQYRTPIWRTRRLAFAKVGTITPEEARARARRLLADAAEGGDPSAERHEARSALTV 99

Query: 72  KWLISEYRKSAHW--------GSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSG 122
             L  +Y ++A               ++           I    G     KIT   ++  
Sbjct: 100 AELCDQYLEAARAGLVLTRFRKPKRASTIAIDEGRVARHIAPLIGKKVASKITRADLQRM 159

Query: 123 VESRK-------------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
            ++                         +A + +  +  ++ WA ++  V          
Sbjct: 160 ADAIAAGKTAATIRTKMRGVARVEGGAGTAARVVELIGGIWSWAEKRGLVEGANPARGVE 219

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL----YSGLRCSDSCRAGVQHLQN 219
             R     R  T E++ +      E    R A    L     +G R  + C      +  
Sbjct: 220 THRGDAKDRILTAEELARLGVVLREQEAVRPAPVAALRIIALTGARREEICSLRWNEIDA 279

Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279
               ++ Q+T T  ++      +  L  T      F   N     +A             
Sbjct: 280 ANSCLRLQETKTGRSMRPIGRAVLDLLATLPRAGDFVFPNRTGDGHAD-MKKALADLFDA 338

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337
           AG+  + +H +R+  A+++AD G     +    G          Y +  D   +    + 
Sbjct: 339 AGLKDTRSHDLRRTFASVAADEGYGDATIGELLGHARRGVTARHYIRRPDAALVA--AAD 396

Query: 338 RISSVVDS 345
           R+S+ + +
Sbjct: 397 RVSACISA 404


>gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7]
          Length = 371

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 84/274 (30%), Gaps = 16/274 (5%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR--------- 126
           ++ +      L  + +  +   +        G   + +I         E           
Sbjct: 94  DFLEYHR-KQLRKHDQK-WGFVYQHFYNFVHGKCTFEEIDVDQCNKFREYLLSAKQLRRD 151

Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            + + +SA  + ++ R   K   R   +  N    +E+ + +       + E++      
Sbjct: 152 GQISKNSASGYWSTFRGFLKILYRNRMIKTNVNDFLEKIEPEDVAKEYLSVEELYCLAET 211

Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
             +    + A  F   + LR SD      + + +     K   T T  T       +   
Sbjct: 212 PCKIPVLKTASLFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDE 271

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
           A+  IG          + +  +      K     AG+ K  + H  R+  AT+ A AG  
Sbjct: 272 ALELIGYCPEKKGLVFKGLKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTD 331

Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
              + +    K++   + Y K  D   R      
Sbjct: 332 IRTIQSNMAHKSITTTQRYMKVVDSNKREATTKI 365


>gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292
                +M +   + +    +     +  ++ +      KA   KAG+     + H  R  
Sbjct: 70  YRQPAWMFIFPSSTLCNHPYSGKLCRHHLHDSVARKALKAAVQKAGILNKRVTCHTFRHS 129

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            AT    AG     +    G   V   + YT   
Sbjct: 130 FATHPLQAGRDIRTVQELLGHTDVKTTQIYTHVL 163


>gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
 gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228]
          Length = 354

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 98/292 (33%), Gaps = 31/292 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  +N   ++ +   ++            ++I  + I   + S     + +S   
Sbjct: 62  AKKARNAGLNGVNTYFNPLKKVFEYLNFYKLHSLKQIDEELIVEVLASITGALSDASKKN 121

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++ + F +  +Q       ++      +          +      ++++++F     
Sbjct: 122 YRIAVIIFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNEDELKKFLEAIE 181

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    ++ +         +         +    
Sbjct: 182 NSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIRIRAKGNKYRVVMIK 241

Query: 242 MKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          +        +N + + +     S   +    +AG+ K    AH +R
Sbjct: 242 KELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAYVSRIVEQILFRAGIRKQKNGAHMLR 301

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
              AT+          +    G  +++ +  YT    D+++L  + ++ +S 
Sbjct: 302 HTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLKLAAQVAKELSE 353


>gi|269138748|ref|YP_003295449.1| putative integrase [Edwardsiella tarda EIB202]
 gi|267984409|gb|ACY84238.1| putative integrase [Edwardsiella tarda EIB202]
 gi|304558741|gb|ADM41405.1| Integrase [Edwardsiella tarda FL6-60]
          Length = 391

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/368 (10%), Positives = 86/368 (23%), Gaps = 36/368 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------- 59
            +  E   +GK  + +R    G      L          A            +       
Sbjct: 24  GLYLEVKPNGKKAWRYRFKLNGKSSMFALGEYPTVKLAEAREKCEQARKQVADGVSPTQA 83

Query: 60  ----YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI 114
                I        T + +  E+ +   W   A  ++       ++++    G    R+I
Sbjct: 84  RQLDKIRKVNDASNTFELIAKEWLQMKDW---AEITKTRRLDMLERVVFPAIGKLPVREI 140

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGI 171
           T  HI   ++   ++  P+ A +   ++  +F+ AV       +P     +         
Sbjct: 141 TPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLRADSDPVWPVRKAIPANKTQH 200

Query: 172 RPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +               + S+         +            +     +   +N      
Sbjct: 201 KQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLARPAEATEAEWTEFDLDNALWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV 282
                     +     + + M    +                         +      G 
Sbjct: 261 AARMKARREHVIPLPSQAVNMLRTLQGLTGHRQHLFPGRDNPLGPMTSHSLRQLLKSLGW 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA---DRIRLGIKNS 336
               S H  R   +T   + G     + A       +     Y       +R  +  + +
Sbjct: 321 SGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTNNVRRTYNHATYLDERKVMMQEWA 380

Query: 337 RRISSVVD 344
             +   V 
Sbjct: 381 DMLDKWVA 388


>gi|238918333|ref|YP_002931847.1| integrase family protein [Edwardsiella ictaluri 93-146]
 gi|238867901|gb|ACR67612.1| integrase family protein [Edwardsiella ictaluri 93-146]
          Length = 336

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 78/306 (25%), Gaps = 50/306 (16%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123
           +   T   L+ EY  +     L   +  S+        R S D    +IT + +      
Sbjct: 2   RNEITWDELLEEYFFAHR---LRPATEWSYSKVVRGFRRYSCDTLPAQITHRQVLEWRRY 58

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-----------NPCLSVERPKRKTEG 170
             + ++ +  +    +  +R L+ + +  E +                   +   R    
Sbjct: 59  LLQDKQQSAQTWNNKIAHLRALYNYGMEYEILPPGKNPFNKSNVQRDTRKKKTLTRSQLI 118

Query: 171 IRPWTKEDMQQFKSFWS--EGSQPRLAFEFLL--------YSGLRCSDSCRAGVQHLQNN 220
                 +  ++ +       G +  L   +          Y+G+R +      +  +  +
Sbjct: 119 RVYLVMQQFEEAERAGHGIRGGRNALWPAWYWLTVLDSFRYTGMRLNQLLHIRLGDINLS 178

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIG---------------------KETFFINN 259
              +     G+    E     +  L                                   
Sbjct: 179 EGYLDLCLEGSKTHREWRVPIVSALKPRLHHLTEKSTELGAGNEDYLFDVNRIHLKRHMA 238

Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQ 318
                   +   +F+  + + G   S H  R   AT    +       +    G ++V  
Sbjct: 239 WDAAKVYQKIRSFFRRLSKECGFAVSPHRFRHTLATELMKSPERNLQLVKDLLGHRSVST 298

Query: 319 AETYTK 324
              Y +
Sbjct: 299 TMEYVE 304


>gi|108801791|ref|YP_641988.1| phage integrase [Mycobacterium sp. MCS]
 gi|108772210|gb|ABG10932.1| phage integrase [Mycobacterium sp. MCS]
          Length = 433

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 106/361 (29%), Gaps = 43/361 (11%)

Query: 1   MTPSLRLPPFVTKERTRHGKI--------IYYFRKGHGRRIRLPYPHESTFIPAYMSALT 52
           M    R      + R   G           +  R    +        +            
Sbjct: 1   MQRRNRRAGVEDRWRRADGSPTARANTGRRWLARYVDDQGQENTRSFDRKVDAQAWLDEI 60

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111
            +        +P+    ++  L +++  +     L   +  +    +   +  +      
Sbjct: 61  TAMQVTGAYVAPKAGRVSVGELYAKWVGTQ--SHLKKTTASTRRYTWPVYVEPRWSAVAV 118

Query: 112 RKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
             + T  +R+ V+S   + +   +    +  +R + + AV    +A NPC  ++ P+RK 
Sbjct: 119 ADVQTTDVRAWVQSMTSSGAGAATVENAVGILRQILEMAVEDRRIARNPCTGIKLPRRKR 178

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----- 223
                 T   ++Q        +       FL Y+GLR  +     V   +          
Sbjct: 179 RPRGYLTHRQVEQLAVEVGTDA---TVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRE 235

Query: 224 ----------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN--------DKQKMN 265
                       + K+     V  P      LA+  IGK+   +                
Sbjct: 236 SVTEVEGQLEWSSPKSYEQRMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWR 295

Query: 266 ATQFSIWFKAKATK-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322
              F+   K    K A     + H +R  +A+++  AGA    +    G  +     +TY
Sbjct: 296 RRVFNKAVKRLLEKDATFPVVTPHDLRHTAASLAISAGANVKAVQTMLGHASAVLTLDTY 355

Query: 323 T 323
            
Sbjct: 356 A 356


>gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 2/104 (1%)

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282
                   +       +  +        +       +  ++ +      K    +A +  
Sbjct: 60  PYALDRKYLNASKEWAWQYVFPAAKRSIDPRSGKQRRHHISESVLQRVVKGAVRRANIAK 119

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
             S H +R   AT   + G     +    G K V     YT   
Sbjct: 120 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|28465853|dbj|BAC57471.1| transposase B [Staphylococcus aureus]
          Length = 630

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 74/290 (25%), Gaps = 33/290 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGV-- 123
            K L+  Y K       + +          +                ++T   I + +  
Sbjct: 218 FKQLVKRYCK-LRLNMDSFSYVSDIAQRLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSE 276

Query: 124 -ESRKHTPSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  PS+    ++ +  LF     +  + V     +  E   +       +  E + 
Sbjct: 277 LNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDEFVL 336

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +  +   +     +A   ++    G+R S+ C      L      +        K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
            V +      L+ +            E  F   D   +    F       A +  +    
Sbjct: 397 IVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  AH  R    T   + G   H +    G ++ +    Y    D 
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDE 506


>gi|312946178|gb|ADR27005.1| putative defective integrase; Qin prophage [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 426

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 109/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+  NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLPDNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|167566496|ref|ZP_02359412.1| Bbp50 [Burkholderia oklahomensis EO147]
          Length = 362

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 97/308 (31%), Gaps = 37/308 (12%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTKHI 119
             T+   +  +        +  +++  +ES                 G    R++   H+
Sbjct: 47  TLTVGGWLDTWLT---AQRIESSTKDGYESAIRFWKAAACDKNQNPLGPTPLRRLKLSHV 103

Query: 120 RSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
            + +  R   +  +   +++ MR     AV    +  NP  +V R K +     P+++++
Sbjct: 104 LTAIAGRPDLSGKTVNNYVSVMRKALDLAVSDNVLTDNPAANVPRAKHQKPPPDPFSRDE 163

Query: 179 MQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------FSI 224
            ++                 EF  ++GLR S+       ++                   
Sbjct: 164 SEKIIHEAERAYPGQVHNLIEFWFWTGLRTSEIFGLQWLNVDLQNGTILVAEALVRGEHK 223

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKA 277
              KT    TV L    +  L       +            +T++         ++    
Sbjct: 224 DRTKTAVARTVRLNSRALAALTRQRSFTQMAGAAIFHDPRYSTRWEDERAFRRSFWTPIL 283

Query: 278 TKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKN 335
            + G+  +  + +R   AT    AG T        G  +++    TY K  D  +  ++ 
Sbjct: 284 KRLGIRYRRPYNMRHSYATAMLMAGMTPAFCAKQLGH-SIEMFLTTYAKWMDGEQNALE- 341

Query: 336 SRRISSVV 343
             R+ S +
Sbjct: 342 MARLESTL 349


>gi|260845008|ref|YP_003222786.1| integrase [Escherichia coli O103:H2 str. 12009]
 gi|257760155|dbj|BAI31652.1| integrase [Escherichia coli O103:H2 str. 12009]
          Length = 414

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/325 (11%), Positives = 88/325 (27%), Gaps = 22/325 (6%)

Query: 22  IYYFRKGHGR-RIRLPYPHESTFIPAYM-----SALTGSTPKREYINSPRKKPTTLKWLI 75
            Y +R      R+ +     ++   A +      AL       +   +P     TLK  +
Sbjct: 66  QYRYRWNGKPVRLTVGRYPSTSLKDARVIVGEMRALYMKGVNPKNYFAPSDGELTLKECL 125

Query: 76  SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133
            ++    +   L  N++  + S   + +  +  D     I         + ++      A
Sbjct: 126 DQWWD-KYVSGLKPNTQTLYRSVVYNTMYTQFEDSPVAGIPVSAWARFFDKQESLNKKKA 184

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQFKSFWS 187
              L  +R +  W + ++ +     L        ++P   +  +       +        
Sbjct: 185 RVLLLQLRSVINWCISRQLIPSCELLKLSVKNIGKKPDVGSRVLTYTELAKIWLTLENSK 244

Query: 188 EGSQPRLAFEFLLYSGLRCSDSC------RAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
             +  +L  + LL  G R S+              +                 +      
Sbjct: 245 VVTSNKLLHQLLLLWGARLSELRLATASEFNMEDLVWTTPKEHSKMGNIIRRPIFTQVEP 304

Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300
                +       F      + ++ +  +++ K    K  +     H  R+   T  +  
Sbjct: 305 YIERLLNIGFDVLFPGQEIDKPIDRSSANLYMKKLREKIDIPEWRTHDFRRSLVTNLSGE 364

Query: 301 GATAHELMATYGWKTVDQAETYTKG 325
           G   H      G +       Y K 
Sbjct: 365 GIMPHVTEKMLGHELGGVMAVYNKH 389


>gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756]
 gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 366

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 97/325 (29%), Gaps = 58/325 (17%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------------FDYRKI 114
           TL     +Y ++    + + N+RIS+        R   +                D   +
Sbjct: 39  TLPSFAKDYFRAIEPTT-SANTRISYAYDIRVFFRFLMENNPVYKNYTIDQFTLADIENL 97

Query: 115 TTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
               I    E  K          +T     + ++++R  + +  +++ ++ NP L V+ P
Sbjct: 98  EPVDIEEYQEYLKVYKNDEKQVTNTEKGLARKMSALRSFYGYYFKRQAISKNPTLLVDMP 157

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----------------QPRLAFEFLLYSGLRCSD 208
           K   + I     +++ +   +   G                 +       LL +G+R S+
Sbjct: 158 KLHEKAIIRLDADEVVRLLDYVDHGGDHLTGQKKAYFEKTRNRDLAILTLLLGTGIRVSE 217

Query: 209 SCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPI-----------GKETFF 256
                +  +          +K G  + V   +     L                 +   F
Sbjct: 218 CVGLDINDVDFENNGIKVMRKGGNEMIVYFGEEVENALKTYMYTTRRTTLPLPGHENALF 277

Query: 257 INNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWK 314
           ++  +++M         K  A +       + H +R    T         + +    G K
Sbjct: 278 LSTQRKRMGVQAIENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHK 337

Query: 315 TVDQA-ETYTKG-ADRIRLGIKNSR 337
            V+   + Y     DR R      +
Sbjct: 338 DVNTTKKHYAAIDEDRRRQAANIVK 362


>gi|86738837|ref|YP_479237.1| phage integrase [Frankia sp. CcI3]
 gi|86565699|gb|ABD09508.1| phage integrase [Frankia sp. CcI3]
          Length = 431

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/378 (10%), Positives = 91/378 (24%), Gaps = 68/378 (17%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y     G + R P   ++         LT    + +          T++  ++ +     
Sbjct: 52  YVLMPDGTQRRRPVYGKT--ADIVREKLTKMQAQSDQGIPAEATGWTMERFLTYWLSDIV 109

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS--------------------- 121
             +    +   +E      +I   G     K+    +R+                     
Sbjct: 110 TPACKPRTVQGYEVIVRNYLIPAIGKKRLNKLNGVDVRNLLKRVRGTCLCCLHGTDRRRP 169

Query: 122 ----------GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                         +  +     Q  + +R +   AVR+E V  N     +      +  
Sbjct: 170 VKQRRCCAVGRCCHQAPSARLVQQVHSVLRNVLGAAVREELVGRNVAKLAKVSGPTYKVH 229

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R  + +         +   +    +   LY GLR  +      + +     ++  + +  
Sbjct: 230 RGLSADQASHLLKAAAHD-RLYALYVLALYLGLRRGEILGLRWEDIDFEDETLAVRHSLQ 288

Query: 232 II------------------------------TVELPDGFMKLLAMTPIGKETFFINNDK 261
            +                                   D   +   +        F     
Sbjct: 289 RVGGHLRVVAPKTRTSERTLPLLPLIAKVLREHQARQDAERETADVNWRETGFVFTTAIG 348

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +        +       G+     H +R    T+  +AG   H +    G   +D   
Sbjct: 349 TPIEPDNLRRSWLPLCGVLGLEGVRFHDIRHTCVTLLLNAGVPPHVVREIAGHSAIDVTM 408

Query: 321 -TYTKGA-DRIRLGIKNS 336
             Y   + D  R  ++  
Sbjct: 409 EIYAHASLDDKRAALQKL 426


>gi|307943727|ref|ZP_07659071.1| shufflon-specific DNA recombinase [Roseibium sp. TrichSKD4]
 gi|307773357|gb|EFO32574.1| shufflon-specific DNA recombinase [Roseibium sp. TrichSKD4]
          Length = 322

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 90/320 (28%), Gaps = 26/320 (8%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++   GK      +     IR      +       +A           +       TL  
Sbjct: 5   KKLASGKWQAQVARKG---IRKSASFATKREAQDWAARQEFLATNVETSKS---NLTLGD 58

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131
           +   Y K                +   Q            +  + +    +SR  + +  
Sbjct: 59  VFDRYAKEESPKRRGERWEAIRLTSLGQY--PIASKLISDLKPQDLAEWRDSRLKEVSAG 116

Query: 132 SAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +  + +  M  +   A ++  + + NP   + +P       R  +  ++++  +      
Sbjct: 117 TVRREMVLMSSVLTTARKEWGLLSSNPMSDIRKPSSPPARDRRVSDGEIERLMTAAGTDL 176

Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK 243
                +   AF F + + +R  +        +            K GT   V L    + 
Sbjct: 177 LQATARAVHAFRFAIETAMRAGEVVGLTEDSVDRKSRVASLPITKNGTARQVPLSSRALA 236

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302
           LL   P      F        N+ Q  + F+    KAG+ +   H  R  + T  +    
Sbjct: 237 LLEELPDSDVGVFGL------NSRQIDVLFRKARDKAGIEDLRFHDSRHEAITRLSKK-L 289

Query: 303 TAHELMATYGWKTVDQAETY 322
               L    G K +   + Y
Sbjct: 290 DVLSLARMVGHKDIRMLQIY 309


>gi|307693363|ref|ZP_07635600.1| integrase family protein [Ruminococcaceae bacterium D16]
          Length = 399

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 96/370 (25%), Gaps = 59/370 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRL---------PYPHESTFIPAYMSALTGSTPKREYINS 63
           + + + G+  + +    G+   +         P P      P+                 
Sbjct: 17  EYQRKDGRYRFRYIDEDGKEKNVYSWRLDKNDPMPKGKKREPSLREKEKQIEADLFDRIV 76

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
                 T+  L+ +Y        +  N+   +++  + + ++  G+    K+     ++ 
Sbjct: 77  TNGGNYTVLELVEKYVSLK--TGVRHNTVAGYKTVINMLKKESFGNLRIDKVRLSDAKAW 134

Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTK 176
           +   + T     SS       +R  F+ AV  + +  NP            +      T+
Sbjct: 135 LIKLQQTDGRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSVTREAITR 194

Query: 177 EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +  +    F  E    S+   A   L ++GLR S+ C   V  ++     IK        
Sbjct: 195 KQQRDLLKFIQEDKHFSRYYDAIYILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRT 254

Query: 234 TVELPD---------------------GFMKLLAMTPIGKETFF-------------INN 259
                                       F +++A     K                    
Sbjct: 255 AQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMP 314

Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                         +       +     + H  R    +  A +G     L    G   +
Sbjct: 315 MVALHWEKYLEHIIQKYNRIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 374

Query: 317 DQA-ETYTKG 325
                TYT  
Sbjct: 375 SVTLNTYTHV 384


>gi|167573456|ref|ZP_02366330.1| integrase family protein [Burkholderia oklahomensis C6786]
          Length = 345

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 96/346 (27%), Gaps = 44/346 (12%)

Query: 16  TRHGKIIYYF---RKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           T++G+  + +   R   G RIR     P   +   A                  RK   T
Sbjct: 11  TKNGRRRFRWKFERVIEGTRIRKSKIIPAGLSAREADELGRKWDAEVYAPATGARKAVVT 70

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR------- 120
           +   +  +           ++    +       +   +  + D   +    IR       
Sbjct: 71  IGDCVRIHVND------KSSTWKDRKIRIQVLTKYAAEYENQDALDLYDWSIRFAGFMRA 124

Query: 121 ----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                G   +  +  +    L  +R   K+A +   +  +    +  P   +E    +  
Sbjct: 125 NVDRQGNPKKPMSDGTVHNTLGYLRAAIKYAHKIGKIDYDQTAKMVIPPA-SEERHVYKG 183

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
                  +      Q R A     YSG+R S+  RA       N  S+ T K G    V 
Sbjct: 184 RREMLEIAHACPNRQVRAAIRVTFYSGMRLSEILRATP---TKNGLSLGTTKNGRPRIVP 240

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295
           +      +          +                 +    TKAG      H +R  +A+
Sbjct: 241 IHPRIAVIARRVTFTIPAWR------------LKDAWIKARTKAGHAEVRFHDLRHSAAS 288

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
              + G   + +    G KT    + Y              ++I S
Sbjct: 289 EMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDK--LADAVKKIGS 332


>gi|160937772|ref|ZP_02085131.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288870075|ref|ZP_06409618.1| transposase [Clostridium hathewayi DSM 13479]
 gi|158439211|gb|EDP16964.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC
           BAA-613]
 gi|288868522|gb|EFD00821.1| transposase [Clostridium hathewayi DSM 13479]
          Length = 408

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 89/380 (23%), Gaps = 51/380 (13%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     G+  + +        ++P         +    +       +       K 
Sbjct: 12  RYAYKYTDTFGEPKFVYSWKLVPTDKIPAGKRPDI--SLREKIKQIQKDLDDGIDTIGKK 69

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRK 127
            T+  L  +Y +    G++   +  S +     +   K G      +     +      +
Sbjct: 70  MTVCQLYEKYIR--QRGNVKRGTHKSRQQLMKLLSEDKIGGASIDSVKLSDAKEWALRMQ 127

Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQF 182
                  +      S++ +F  AV+ + +  NP      E     T    P T    ++ 
Sbjct: 128 EKGVAYHTICNGKRSLKAIFHMAVQDDCLRKNPFDFQINEVINDDTVPKVPLTPAQEKEL 187

Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--------------IK 225
             F        +       LL +GLR S+ C      L  +                   
Sbjct: 188 LGFMQSDPVYAKYYDEVLILLETGLRVSELCGLTPADLNFDKRFVNVDHQLLRSTEDGYY 247

Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
            +   T                                     F    +    KA VN  
Sbjct: 248 IEAPKTDSGYRQVPMSAAAYKAFQRVLHRRKDGKGVVVDGYKGFLFLNRDGLPKAAVNYD 307

Query: 285 ----------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                                 + H +R    T  A+AG     L    G   +     Y
Sbjct: 308 SMFQGLAKKFNKFHAEPLPEVMTPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 367

Query: 323 TKGADRIRLGIKNSRRISSV 342
              A       +   R+ + 
Sbjct: 368 YAHATF-HSAQEEMERLQAK 386


>gi|170744937|ref|YP_001773592.1| integrase family protein [Methylobacterium sp. 4-46]
 gi|168199211|gb|ACA21158.1| integrase family protein [Methylobacterium sp. 4-46]
          Length = 430

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 94/361 (26%), Gaps = 48/361 (13%)

Query: 12  TKERTRH-GKIIYYFRKGHGRRIRLPYPHESTFIPA----------YMSALTGSTPKREY 60
            +   R  GK +     G              F  A                    +R +
Sbjct: 38  YRRLARGAGKWVARHYVGERAYEVETLATADDFSDADGVAVLNFRQAQELARARMVQRAH 97

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             + +  P T++  +  Y         +     +       I    GD +   +TT  + 
Sbjct: 98  AAAGKTGPLTVQDAVEAYLAFLDANRKSG--LDARHRAQAFIYPLLGDVEVEALTTAKLS 155

Query: 121 SGVESRKHTP---------------------------SSAIQFLTSMRVLFKWAVRQEYV 153
             +     TP                           S+A + LT ++     A R   V
Sbjct: 156 RWLTDLAKTPPRIRTKAGAEQRYREVPDDDESRRRRRSTANRTLTVLKAALNRAWRAGQV 215

Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
           + +       P    +  R       +  +   +     R+  +  L +G R  +     
Sbjct: 216 SSDAAWRRVEPFENVDATRVRYLTVTEAQRLINAADPDFRVLVQGALQTGARYGELVALR 275

Query: 214 VQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271
           V     +  +  I+  K+G    + L D      A    G+    +   K    A   S 
Sbjct: 276 VADFNPDSGTLSIRRSKSGKPRHIVLTDEGAAFFARHVAGRAGSDLMFVKASGAAWGSSH 335

Query: 272 WFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
             +  A      +     S HG+R   A+++         +    G       E  Y   
Sbjct: 336 QLRPMADACRNGRITPWISFHGLRHTWASLAVMNSTPLMVVARNLGHADTRMVEKHYGHL 395

Query: 326 A 326
           A
Sbjct: 396 A 396


>gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               G+  +     +  +    N  +  ++ +      K+    AG+  + S H  R   
Sbjct: 71  PRQWGWQYVFPAPSLSIDPRTGNERRHHLSESAVQKSVKSAIRNAGIAKHASCHTFRHSF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   ++G     +    G K V     YT   
Sbjct: 131 ATHLLESGYDIRTVQELLGHKDVRTTMIYTHVL 163


>gi|78048040|ref|YP_364215.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036470|emb|CAJ24161.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 400

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 26/329 (7%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 54  RYGVGGITLAEARERLGEAKKMVAAGKSPAKEKARDKARVKGAETFGAWAEKWLRGYQ-- 111

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142
            +A ++R    S +++ +  K G+    +IT + +R+  ++      P++A+     +  
Sbjct: 112 -MADSTRDMRRSVYERDLKPKFGNQKLVEITHEDLRALTDAIVERGAPATAVHVREVVMQ 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +++WA+ +     NP   V          R           M Q+          R A +
Sbjct: 171 VYRWAIERGQKVENPAELVRPTSIAKFEPRDRALTPDEIGLMYQYMERIGTAPSIRAAAK 230

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +  +       ++        L     + L +         
Sbjct: 231 LLLLTMVRKSELTNATWSEINFSDALLTIPKERMKRRNPHLVFLSRQALDIFIALKTFAG 290

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNK---SAHGVRKFSATISADAGA 302
                     +    M++   +         A K G        H +R+ ++T+  +AG 
Sbjct: 291 GSDYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGKPLAKFGPHDLRRTASTLLHEAGY 350

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +      +       Y K   R + 
Sbjct: 351 NTDWIEKCLAHEQRGVRAVYNKAEYREQR 379


>gi|22537398|ref|NP_688249.1| phage integrase family site specific recombinase [Streptococcus
           agalactiae 2603V/R]
 gi|76798019|ref|ZP_00780277.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77406036|ref|ZP_00783113.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|313889440|ref|ZP_07823088.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|22534273|gb|AAN00122.1|AE014249_3 site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 2603V/R]
 gi|76586642|gb|EAO63142.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae 18RS21]
 gi|77175372|gb|EAO78164.1| site-specific recombinase, phage integrase family [Streptococcus
           agalactiae H36B]
 gi|313122272|gb|EFR45363.1| site-specific recombinase, phage integrase family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|323127165|gb|ADX24462.1| phage integrase family site specific recombinase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 399

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 109/371 (29%), Gaps = 48/371 (12%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKG----HGRRIRLP------YPHESTFIPAYMS 49
           M          V       GKI Y    G     G+R++             T   AY  
Sbjct: 1   MATKSSKKYKGVYC--DNKGKIFYQIDLGIDPVTGKRVQKKARKNQYGKTFETMKEAYDE 58

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            +         ++       T +  +++ Y ++      +V +  +   +    I+  G 
Sbjct: 59  LVRIKYEFANKVSL-ENYNMTFENYMNKIYLRAYKQKVQSV-TYKTALPHHKLFIQYFGL 116

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              + IT +   +        ++ + A    +  +    +A R  Y++  PC +++ P+ 
Sbjct: 117 KPLKAITPRDCEAFRLHIIENYSENYAKNLWSRFKACMGYAERLGYISNMPCKALDNPRG 176

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--- 219
           K      WT  + Q F         E  Q   A      +G+R S+      + +     
Sbjct: 177 KHPETPFWTYAEFQTFIKSFDLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKK 236

Query: 220 ---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--- 261
                               +T+       +EL D  +++L +    +      +     
Sbjct: 237 FLKVHTTLEKDENGNWYRKDQTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISR 296

Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKTVD 317
                  +      K KA + GV   +  G+R   A+   +        +    G     
Sbjct: 297 FGDPFCKSTICRIIKRKAQQVGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKS 356

Query: 318 QA-ETYTKGAD 327
               TY+   +
Sbjct: 357 TTLNTYSHWFN 367


>gi|325264365|ref|ZP_08131096.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
 gi|324030436|gb|EGB91720.1| putative integrase/recombinase, phage integrase family [Clostridium
           sp. D5]
          Length = 279

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 77/267 (28%), Gaps = 8/267 (2%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           +  T+K    E+ K       +  +   +      +I         K +           
Sbjct: 3   EKITIKKA-KEFEKELIMSEKSSATVEKYMRELQNLIEFLDGRKINK-SRLMEYRNALQL 60

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +    L+++    ++    EY      +  +    +   ++    + +       
Sbjct: 61  NYKAQTINVKLSAVNAFLEFTGMSEYRIKFMKVQKKSFIEEERELKEDEYKTLLATARQM 120

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKL 244
            +  +       L  +G+R S+        ++     I  +    ++    EL     K 
Sbjct: 121 GK-IRLYYILLTLCGTGIRISELKYITANAVRQGRAEINMKGKHRVVLLPKELKSRLKKY 179

Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301
           + +  I +   FI  +   ++ +      K  ++ AGV       H +R   A       
Sbjct: 180 MGLKNIEEGCVFITKNGNPVDRSNIFHEMKKLSSAAGVEQQKVYPHNLRHLFARSFYAVE 239

Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328
                L    G  +++    Y   + R
Sbjct: 240 KNLSHLADILGHSSIETTRIYVASSYR 266


>gi|300824138|ref|ZP_07104257.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|331667354|ref|ZP_08368219.1| putative integrase for prophage [Escherichia coli TA271]
 gi|300523314|gb|EFK44383.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 119-7]
 gi|331065710|gb|EGI37603.1| putative integrase for prophage [Escherichia coli TA271]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 89/291 (30%), Gaps = 27/291 (9%)

Query: 51  LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
           +       E   +      T+  L   +  S  +  LA  ++  +  +   ++   G   
Sbjct: 6   VAKVWQNYELEKAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVL 65

Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
              +  + +R  ++ R   + + A   L S+  ++ W   + YV  NPC  V    + T 
Sbjct: 66  ADNVKIEQVRIFMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVR---KFTL 122

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
             R     D Q    +     Q R+A E       R  D      Q +      I+  KT
Sbjct: 123 KARTVYITDEQYAAIYAEAIPQLRIAMEISYLCAARLGDVLELKWQDIMEKGIYIEQNKT 182

Query: 230 GTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKAT----KAG 281
           GT    E        + +         E         K+ A   + W+         KAG
Sbjct: 183 GTKQIKEWSPRLRTAIQLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAG 242

Query: 282 VN--KSAHGVRKFSATISADAGATA-----HELMATYGWKTVDQAETYTKG 325
           V    + H +           G +       +     G KT +Q   Y + 
Sbjct: 243 VPFGCNFHDI--------KAKGISDYEGSSRDKQIFSGHKTENQVLIYDRK 285


>gi|296454815|ref|YP_003661959.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184247|gb|ADH01129.1| phage integrase family protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 486

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 94/379 (24%), Gaps = 57/379 (15%)

Query: 1   MTPSLRLPPF--VTKERTRHGKII-YYF--------RKGHGRRIRLPYPHEST-----FI 44
           M    +   F  V   +T HG +    +        R    R+ +     + T       
Sbjct: 1   MPRKAKRNDFGSVKPRKTAHGVVYQARYKTPVEMIPRYPGARKEQYKTFADETEAYGWLA 60

Query: 45  PAYMSALTGSTPKREYINSPRKKPT-TLKWLISEYRKSAHWGS---LAVNSRISF-ESYF 99
                   G     + +           +   + + ++    +   L  +++I + E   
Sbjct: 61  AEKRKIAAGVWEPPKAVAVRAAAKGVKFRDYATSWIENRRKPNGEALESSTKIKYTEKLE 120

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPC 158
           + +++  GD     I    ++   +S    P        T ++ +   A  +        
Sbjct: 121 NHLLKPFGDKTVAAIKPDDVQKWWDSYGANPPQVRSDAYTMLKSIMHTAETEPINEQGDT 180

Query: 159 LSVERPKRKT---EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL----------- 204
           L    P R        +  T            E    RLA    L   +           
Sbjct: 181 LIDRSPCRLRGTTVRKKHKTVTAELHEIKTVYEAMPERLALSIYLGGVMSLRIGEVLALR 240

Query: 205 -------RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257
                  +        V+    +   +  +        +      + L         +  
Sbjct: 241 RGDVDLTKNVLHVAGSVKPAMKDGKQVIVRGKTKTANSDRYIDIPEALRPIFAEHLRYHT 300

Query: 258 NNDKQK----------MNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGAT 303
              K            M    FS +++                H +R  +     + GAT
Sbjct: 301 GRGKAALLFEAKKSGVMRENVFSYYWRQARATVPRLREGEMKFHDLRHTALQHLVENGAT 360

Query: 304 AHELMATYGWKTVDQAETY 322
            + +MA  G   +  A  Y
Sbjct: 361 LNMVMAVAGHSDIKVAGKY 379


>gi|294806822|ref|ZP_06765648.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294445992|gb|EFG14633.1| site-specific recombinase, phage integrase family [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 409

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 80/284 (28%), Gaps = 25/284 (8%)

Query: 70  TLKWLISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIR 120
           TL  L  E  +S         A ++     + +  ++               ++    I 
Sbjct: 107 TLMNLFREQLESYKKKIGIEKAESTYRGLVADYKNLLLFMKSKKNTEDIVIEELEKSFIE 166

Query: 121 SGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176
                   T + A       + +++ L   A  + ++ ++P  S E            ++
Sbjct: 167 DYYNWMLGTCALANSTAFGRVNTLKWLMYIAQEKGWIRVHPFASFECMPEYK-RRSFLSE 225

Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           E++Q+         + R   +  L+   +GL  +D       ++  +           I 
Sbjct: 226 EELQRIIRIELRYKRQRAMRDMFLFMCFTGLSYADLKTITYDNIHTDSDGGTWLMGNRIK 285

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAG--VNKS 285
           T       +  +A+  I K                        +       K    V  +
Sbjct: 286 TGVAYVVKLLPIAIELIEKYRGTDEKKDSPEYVFPVGEYNAMRLSLGIIGRKCNCRVEVT 345

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            H  R   A ++   G     L    G K++   + Y +  +  
Sbjct: 346 PHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPK 389


>gi|254190713|ref|ZP_04897220.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|254196969|ref|ZP_04903393.1| phage integrase [Burkholderia pseudomallei S13]
 gi|157938388|gb|EDO94058.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|169653712|gb|EDS86405.1| phage integrase [Burkholderia pseudomallei S13]
          Length = 379

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 94/339 (27%), Gaps = 39/339 (11%)

Query: 22  IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81
            +  +     +             A+   + G   K +   +  ++  T+  L+  YR +
Sbjct: 24  RWRAQVRRRGQSISKTFRTKGAAEAWAREIEGGIDKGQ--AAVDEQTITVGELVRLYRNA 81

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLT 138
                 +V  + + +    ++     D    K++TK +    + RK   +   +    ++
Sbjct: 82  RDDSGRSVAEKSNEDYMLKRLESHFDDEVAAKLSTKRLVKFAQERKKEGAGQYTIDMDIS 141

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERP------------KRKTEGIRPWTKEDMQQFKSFW 186
            +  ++K       + +    S+ RP             R     R    +  + F    
Sbjct: 142 KLGTVYKHMASLLDLRLPHAPSIARPTLDHLQLIGPGKHRDRRPTREEIVKIFEWFAEHP 201

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245
                        + S  R  +  R     L         +        +  D ++ L+ 
Sbjct: 202 EREQAVPDVICVAMKSAFRRGELFRLTWSDLDVERRLALVRDRKHPRQKKGNDEWVPLIG 261

Query: 246 --------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284
                                           N    + + +  S +FK      G+ + 
Sbjct: 262 DSLEVLLRQPRYPVAPEYEAKRRADPSIAPHPNEYIFRFDKSTASKYFKLACVDKGIVDL 321

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
             H +R  + +   + G    E+ A  G K     + YT
Sbjct: 322 RLHDLRHEATSALFEGGWDIPEVAAVTGHKDWRNLKRYT 360


>gi|319744212|gb|EFV96579.1| phage integrase family site-specific recombinase [Streptococcus
           agalactiae ATCC 13813]
          Length = 384

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/354 (10%), Positives = 92/354 (25%), Gaps = 52/354 (14%)

Query: 24  YFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--RK 80
           YF     + R        ++   A  +AL      R+     R   T+L      +   K
Sbjct: 20  YFEIRDNKGRTVACQSGFNSKREAENAALEIQQKLRQGYTLDRH--TSLYEWFQTWYDLK 77

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
                 ++  ++ ++++Y + I R  GD    +I     +  +     T      +L+ +
Sbjct: 78  ILPKKKISQETKKNYQTYGETIKRLFGDRPIVEIKASQYQRIMNIYGETVGY--DYLSRI 135

Query: 141 RVLFKWAVRQEYVAINPC-------------LSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
             + +  ++   +                     +   +    +  + K       +   
Sbjct: 136 NSVIRKTIKLAQLDKIVIDDFTSNVELFAGKEGQKPEDKYIHKVEDYQKLIKYLENNLNY 195

Query: 188 EGSQPRLAFEFLLYSGLRCS--------------DSCRAGVQHLQNNIFSIKTQKTGTII 233
           E S        +  +G+R                       ++  ++    K +   +  
Sbjct: 196 EDSIVNYIIYTIAKTGMRYGEAIGLLDNDSNFEEYYIHTDKRYNTSSWKWTKAKNESSKR 255

Query: 234 TVELPDGFMKLLAMTPI---------------GKETFFINNDKQKMNATQFSIWFKAKAT 278
            V +    +++L+   I                   F    +    +    +   K    
Sbjct: 256 YVPIDKKTIEVLSKMIIERKRINSVLKIKNTENFLFFHYGLEHGIPSVATVNKALKKILK 315

Query: 279 KAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329
           +  +    +  G+R    +           +    G K +    E Y       
Sbjct: 316 ELKIEPLITTKGLRHTYGSYLLHKNIDMGVVAKILGHKDIQMLIEVYGHTMTEK 369


>gi|296273220|ref|YP_003655851.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097394|gb|ADG93344.1| integrase family protein [Arcobacter nitrofigilis DSM 7299]
          Length = 383

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 97/363 (26%), Gaps = 40/363 (11%)

Query: 1   MTPSLRLP---PFVTKERT-RHGKIIY---YFRKGHGRRIRLPYP--HESTFIPAYMSAL 51
           MT     P     +    + +  K +Y   Y+     + I L          +      +
Sbjct: 1   MTRPKNYPTNYKNIYYYISIKTNKKVYFGRYYENKKQKTISLGSSLNIAKKKMNLIKKGI 60

Query: 52  TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGD 108
           +         N    K    + +   Y +         +++        +   I+   G 
Sbjct: 61  SKKDSSLIVYNKEVLKKYDKESIEVLYFEYIDIEGKKWSTQELKTKKSRFKRWILPHFGK 120

Query: 109 FDYRKITTKHIRSGVESRKHTPSSAI----QFLTSMRVLFKWAVRQEYVAI-NPCLSVER 163
            +   +   HI+  +         A        +S++  FK+ +++ Y+   NP   V+ 
Sbjct: 121 MNIHDVRYSHIQKFINDIDDKKLLARKTQENLKSSIQSFFKFCIKEGYLNTGNPAQYVDI 180

Query: 164 PKRKTEGIRPWT-------------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
                      T              +         +  ++ +     L+  G R +++ 
Sbjct: 181 KAYDNHVPMTLTLEQIIRFYQTIIDIDCHSSPNQSANLDNRKKRLMLILMIHGRRWNEAQ 240

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-------KETFFINNDKQK 263
                 +             +             L +  +         E F   N + K
Sbjct: 241 NLCWSEIDFISNLYIIPAHKSKTKKTQKHKMTDFLRLELMELKVISKEGEDFLFINPQTK 300

Query: 264 MNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADA-GATAHELMATYGWKTVDQAE 320
              +  + +FK    KA + K+      R    T++    G     +       +V   E
Sbjct: 301 KPYSSINTFFKTIKKKADIPKTFRCQDFRHVVGTVAYQNLGIPLENIRDVLAHGSVTTTE 360

Query: 321 TYT 323
            Y+
Sbjct: 361 IYS 363


>gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 333

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 80/284 (28%), Gaps = 40/284 (14%)

Query: 87  LAVNSRISFESYFDQIIRKS----GDFDYRKITT-----------KHIRSGVESRKHTPS 131
            +  +   +  Y    +       G F   +I             ++I   ++ R    +
Sbjct: 32  KSPKTLQDYLFYLKDFLSFVYDGDGSFQQEEILPLMKGIEKEDVEQYIAHLLQERNMKKT 91

Query: 132 SAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           S  + +++M+ L+K    + V   +  +    +        +      K+ ++QF+    
Sbjct: 92  SVNKVISAMKSLYKELEQYQVENPFRYVKLFKTTRNLDNILKISSNDIKKIIEQFQVKNE 151

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247
           +  +  +    L Y+G+R  +      +HL N   S   +   T    E        L  
Sbjct: 152 KDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGSYFLKLEKTKSGREQYKPLHPALME 211

Query: 248 T-------------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288
                                         +  + ++        K+         S H 
Sbjct: 212 KLQEYKKEMKALYQLEEEDLQNHFVFCSHFDKNKALSYRALYDLIKSLGLSIEKEMSPHN 271

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIR 330
           +R   AT  +  GA   E+    G       E Y   K     R
Sbjct: 272 IRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKSILEKR 315


>gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 318

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 71/276 (25%), Gaps = 42/276 (15%)

Query: 89  VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142
             +R ++++           +G  ++R +   H+ +     E R  + ++  + L ++  
Sbjct: 38  PRTRRAYQADLRDFCSFVGLAGAEEFRAVNRSHVLAWRAQLERRALSGATIRRKLAALAS 97

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------------G 189
           LF +      +  N  L+   P       +  T E                        G
Sbjct: 98  LFDY------LLNNNALAGGNPVHGVARPKVETNEGKTPALGDDQAKRLLDAPDAESLQG 151

Query: 190 SQPRLAFEFLLYSGLRC-----------SDSCRAGVQHLQNNIFSIKT---QKTGTIITV 235
            + R     LLY GLR             +        +      I+             
Sbjct: 152 VRDRAILAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIY 211

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292
                             +         +            A+ A +       HG+R  
Sbjct: 212 VYLVRDGDRALTPGALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLGVHGLRAT 271

Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           +AT + +  A   ++    G   +     Y +   R
Sbjct: 272 AATNALEHDADIAKVQIWLGHANISTTRLYDRRGQR 307


>gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 333

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 90/318 (28%), Gaps = 32/318 (10%)

Query: 36  PYPHESTFIPAYMSALTGSTPKREYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNS 91
           P P +   +   ++ L             R+       TL ++  EY +      L+  +
Sbjct: 3   PGPGDRAALKHLIAFLDRERLIPAQRTPARRLTPVESCTLAYV--EYLREVRA--LSKAT 58

Query: 92  RISFESYFDQIIRK-SGDFD--YRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKW 146
            I++  +  + +    GD      ++    + +    +++      A     ++R   ++
Sbjct: 59  IINYTPFIREFLEDCFGDRRVRLSRLRAGDVVNFVQFQAQHLHLKRAKLMTAALRSFLRY 118

Query: 147 AVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200
           A  +  + ++         +               +E +       + G +       L 
Sbjct: 119 ACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQELLVSIDRRTAVGRRDYAIILLLA 178

Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKETF 255
             GLR  +     +  +  N   +  +    +        ++       L        + 
Sbjct: 179 RLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLRNGLPLPADVGKAIAAYLRYGRPQSTSR 238

Query: 256 FIN-----NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHEL 307
            +            +A       +    +AG+N     AH  R   A+     GA+  E+
Sbjct: 239 RVFLRAKAPFTGFRSACGVGSIVRHSLQRAGINAPTTGAHQFRHALASQMLRHGASLREI 298

Query: 308 MATYGWKTVDQAETYTKG 325
               G         YTK 
Sbjct: 299 GELLGHHHPQTTSIYTKV 316


>gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             +              ++G+    S H +R   AT     G     + A  G K+V   
Sbjct: 97  HHIGRRVLQKAMLRAVKESGILKKASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|227535716|ref|ZP_03965765.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186683|gb|EEI66750.1| bacteriophage integrase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 376

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/359 (8%), Positives = 85/359 (23%), Gaps = 47/359 (13%)

Query: 16  TRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R  K  Y           + +                 +     +   ++       TL
Sbjct: 7   KRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAAIEVERQHNRGANLDL---NKITL 63

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
                ++ +    G  +  +   +++   Q++   G+  + + I+    +  +       
Sbjct: 64  IDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKR 123

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQF 182
           +  +  +    +R +   AV  + +  N   +        +            ++ +   
Sbjct: 124 AKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYC 183

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
             F                +G R S+       H+      +   +T             
Sbjct: 184 LEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAATK 243

Query: 236 ---------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                +     + L       K+  F +     +++T  +   +
Sbjct: 244 NKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSIRHNMLSSTAINKDLR 303

Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
                  +    + HG+R    +         + +    G       +  Y    +  R
Sbjct: 304 TIEKNLDIYPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQR 362


>gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
                       K    KAG+    S H +R   AT   ++G     +    G   V   
Sbjct: 97  HHAPEDALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L+ +    +  Q +Q     +                +  +        +       +  
Sbjct: 39  LQLTRHRWSESQAVQPIPVYLPVALDRKYPGAAHEWIWQFIFPSGKPSLDPRDGTLKRHH 98

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             A       K  A  A +  N S H +R   AT   + G     L    G + V+    
Sbjct: 99  YRADTLQQAIKRAARAANLSHNVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMI 158

Query: 322 YTKGA 326
           YT   
Sbjct: 159 YTHVL 163


>gi|330861672|emb|CBX71848.1| prophage DLP12 integrase [Yersinia enterocolitica W22703]
          Length = 281

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 22/264 (8%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
            +  +         +  K    G   ++ +P++  Q L+ +R L + A  +    +    
Sbjct: 10  RKHRQIWESKRDAALRKKKPIPGYVEKQVSPATRSQHLSFIRSLLRAAADEWK-WLAKAP 68

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
            ++  K ++  IR  TK++     +   E  +P     F L +GLR S+        +  
Sbjct: 69  VIKTRKPQSRRIRWLTKDEAVTLINCMPENFRP--VVVFALATGLRRSNILDLEWSQIDM 126

Query: 220 NIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF------ 269
                            I V L D   K+L         +   +      A         
Sbjct: 127 QRKVAWIHPENAKAGKAIGVALNDMSCKVLREQIGRHSRYVFVHTSAWHRADGTKTAEVR 186

Query: 270 ------SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                 +  ++    ++G+ +   H +R   A+    AG     L    GW++++    Y
Sbjct: 187 KMRVDDNTAWRNGLKRSGITDFRFHDLRHTWASWLVQAGVPLSALQEMGGWESIEMVRRY 246

Query: 323 TKGADRIRLGIKNSRRISSVVDSD 346
              +       +++R+I  V+  +
Sbjct: 247 AHLSPNH--LTEHARKIDEVMGFN 268


>gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium]
          Length = 159

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium]
          Length = 167

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 2/101 (1%)

Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285
                        F            +      +  ++ +      K    +A +NK  S
Sbjct: 67  YPNAAREFLWQYVFPSTRRSIDPRVNSDPPKQSRHHVDESFLQRAVKIAVREARINKPGS 126

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            H  R   AT   + G     +    G K V     YT   
Sbjct: 127 CHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHVL 167


>gi|57867418|ref|YP_189033.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283771080|ref|ZP_06343971.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
 gi|57638076|gb|AAW54864.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A]
 gi|283459674|gb|EFC06765.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19]
          Length = 675

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 78/328 (23%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 207 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 266

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E           + T +   + L ++R      + Q Y        +       
Sbjct: 267 HIEAYIEFLFEYAANKHLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 325

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 326 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 385

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 386 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 445

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 446 KRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 505

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 506 LLAHSSPEMTLRYAKLLDDTKRKAFESV 533


>gi|222033338|emb|CAP76078.1| lambdoid prophage Qin defective integrase [Escherichia coli LF82]
          Length = 426

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 109/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+  NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLPDNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRHMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|186472095|ref|YP_001859437.1| integrase family protein [Burkholderia phymatum STM815]
 gi|184194427|gb|ACC72391.1| integrase family protein [Burkholderia phymatum STM815]
          Length = 434

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 101/325 (31%), Gaps = 31/325 (9%)

Query: 43  FIPAYMSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100
              A      G +P +  +          T    + +Y   A   +LA ++R   +S +D
Sbjct: 85  LERARRQVEQGVSPSKSKVEKRVEAADAMTFGKWVEKYFAEA---TLAESTRAMRKSVYD 141

Query: 101 Q-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINP 157
           + +  + G     +IT   +    E  K   ++A  +Q    +  ++++   +     NP
Sbjct: 142 RNLAAEFGRLTLEEITPSRLLMRCEKIKERGAAAPAVQARDIVLQVYRFVQARGLRVANP 201

Query: 158 CLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
              +      T   R             +           RLA +F+L + +R S+   A
Sbjct: 202 AEDIRPSAIATFKPRDRALTPGEIHMFFKALERTPTLPTLRLAVKFMLLTMVRKSEFILA 261

Query: 213 GVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG-----KETFFINNDKQK 263
               +  N           K G    V L    + +L                    +  
Sbjct: 262 TWDEVDFNAAIWTIPKDRMKGGRPHNVYLSQQALDILVTFKTCFGASSYLHPGRYESELP 321

Query: 264 MNATQFSIWFK---AKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTV 316
           ++A   +           ++G       S H +R+ ++T   +AG  +  +      +  
Sbjct: 322 ISAATLNRVIDSAVRLIRESGAPDFESFSVHDLRRTASTQLHEAGFNSDWIEKCLAHEQR 381

Query: 317 DQAETYTKG--ADRIRLGIKNSRRI 339
                Y K   A++ R  ++    +
Sbjct: 382 GVRAVYNKAEYAEQRRGMLQTWAEM 406


>gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
 gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata
           HTCC2501]
          Length = 423

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 112/319 (35%), Gaps = 27/319 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSG--- 107
           +   +E      ++   L  +  E+    KS      A+ +   + + F           
Sbjct: 92  ARQIKERYLQKDQRFKMLMEVFEEHNRQMKSLVGKEYALGTWKRYNTTFKHTREFLKTEY 151

Query: 108 ---DFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
              D    ++  + I       K T     +S+++++ + + + +  V  +++  +P  +
Sbjct: 152 RRDDIPMMEVDLRFINRFDYFLKFTKECNHNSSLKYINNFKKIIRMGVANDWIQKDPFYN 211

Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL 217
            +   +  +     T+E++++  ++     +    +  F F  ++GL   D  +    ++
Sbjct: 212 FKAKFKWVD-REYLTREELERLINYEVTVPRMGIVKDMFVFCCFTGLAYIDVKKLTPNNI 270

Query: 218 QNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272
             +           QKT + + + L    ++++       +    +     ++  + + +
Sbjct: 271 VKHIDGSLWIQSARQKTRSKLGIPLLPTALEIIEKYEDHPKVVNGDCVIPVLSNQRSNAY 330

Query: 273 FKAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            K  A   G+  + + H  R   AT      G     +    G + +   + Y K  ++ 
Sbjct: 331 LKEIADICGITKHLTTHLARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKK 390

Query: 330 RLGIKNSRRISSVVDSDDP 348
                +   + +V++   P
Sbjct: 391 --VADDMAALKNVLNLRKP 407


>gi|321157335|emb|CBW39317.1| Integrase [Streptococcus pneumoniae]
          Length = 421

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 111/410 (27%), Gaps = 77/410 (18%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K   ++G+I Y  +          G+RI        T        +       +  ++
Sbjct: 13  VIKITKQNGEISYSIKGVYIGTDIKTGKRIT-RTITAKTLKALDRKIIESKIQFEKSGST 71

Query: 64  PRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            ++  +    + L   +         + N+      Y D  II + GD+   +I    I+
Sbjct: 72  TKETIQIGNFESLAEIWFSHFKTWVSSQNTINRVRGYLDTYIIPQFGDYRPEQIEASDIQ 131

Query: 121 SGVESRKHTPSSA--IQFLTS--------------MRVLFKWAVRQEYVAINPCLSVERP 164
             +         A       +              M  +F + +    +  NP  +++ P
Sbjct: 132 LWLNQLAKKAKQAIESGKKRAPKGSAKDFGAMAHKMSDIFDFGITNCGLKNNPAKTIKIP 191

Query: 165 KRKTEGIRPWT---------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +                                 + ++    LL S LR ++     + 
Sbjct: 192 PKPKAIKERIMVLHDEDLKLWLTYLDTLPNTRANRRFKIICNTLLASALRINELLALEIT 251

Query: 216 HLQNNIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMTPI 250
            L      I   KT                              V +P   ++ L     
Sbjct: 252 DLDFETNEIIVNKTLMWKSANKKLNQKGGIICKNSPKTDAGNRRVAVPISTLEGLREFHQ 311

Query: 251 GKETFFINNDKQK------------MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
               +F  +   +            M         K +  + G+     H  R   A++ 
Sbjct: 312 EMSLYFEEHHLPRSKLIFPTIYGNYMCDRNERATLKKRLIELGLPNYGFHLFRHTHASMM 371

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIR-LGIKN-SRRISSVVD 344
            +AG    EL    G K++     TY + A + +   +     ++  + D
Sbjct: 372 LNAGTNWKELQHRMGHKSITTTMDTYAELAPKKKFEAVDIFLDKLQELTD 421


>gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
 gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis
           ATCC 12228]
 gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp.
           aureus C427]
          Length = 675

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 79/328 (24%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 207 EKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 266

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E         + + T +   + L ++R      + Q Y        +       
Sbjct: 267 HIEAYIEFLFEYAANKNLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 325

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 326 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 385

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 386 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 445

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 446 KRKGMPFTQHMVRAHLNHLSKTKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 505

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 506 LLAHSSPEMTLRYAKLLDDTKRKAFESV 533


>gi|325680240|ref|ZP_08159802.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
 gi|324108057|gb|EGC02311.1| site-specific recombinase, phage integrase family [Ruminococcus
           albus 8]
          Length = 390

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/358 (10%), Positives = 87/358 (24%), Gaps = 51/358 (14%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +        GK    +          P+P       +                +     
Sbjct: 16  RYRYTYVDAFGKKRSVYSWRL--DTTDPHPEGKRHDLSLREKEQKVAKDTYDHIAVNGGN 73

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKIT----TKHIRSGV 123
            T+  L+  Y K      +  +++I + +  + + +   G     KI        +    
Sbjct: 74  YTVLELVERYLKLK--TGVRQSTQIGYRTVINLLKKDPFGSLRIDKIRLSDAKIWLIKLQ 131

Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181
                + SS       +R  F+ A   + +  NP         +  +E     T++ M  
Sbjct: 132 REDGKSYSSIHTIRGVLRPAFQMAEDDDLIRKNPFRFELATIIENDSEPREALTEKQMND 191

Query: 182 FKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232
           +  +  +    S+       L  +G+R S+ C   V  +  +   I  ++          
Sbjct: 192 YLDYVRDDDYFSRYYDGIFILFNTGMRISEFCGLTVSDIDFDEHRINVERQLIRTSSGKY 251

Query: 233 -----------ITVELPDGFMKL--------------------LAMTPIGKETFFINNDK 261
                        + +     +                     +    + K         
Sbjct: 252 IVQAPKTHSGIRFIPMTFEVEQAFRRVISSRRRVKSEPAVGGCIGFLFLDKNGMPKLAMH 311

Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
            +    +    +  +  +     + H  R    T  A  G     L    G   V   
Sbjct: 312 WQKVMQRIREKYCHERLRTLPKITPHVCRHTFCTNMARKGMNPKMLQYIMGHADVGVT 369


>gi|323185883|gb|EFZ71240.1| phage integrase family protein [Escherichia coli 1357]
          Length = 426

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/411 (11%), Positives = 108/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGS--------- 54
           ++ P  V       GK+  ++  KG   R  L  P  +                      
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 57

Query: 55  -------TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
                  + +        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGETRQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDVDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|260868071|ref|YP_003234473.1| putative integrase [Escherichia coli O111:H- str. 11128]
 gi|257764427|dbj|BAI35922.1| putative integrase [Escherichia coli O111:H- str. 11128]
          Length = 426

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 112/411 (27%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAY--------MSALTGST 55
           ++ P  V       GK+  ++  KG   R  L  P  +               +  TG  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKENEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLKEYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|237727472|ref|ZP_04557953.1| integrase [Bacteroides sp. D4]
 gi|229434328|gb|EEO44405.1| integrase [Bacteroides dorei 5_1_36/D4]
          Length = 371

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 97/300 (32%), Gaps = 41/300 (13%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRK-- 127
            LI +Y +    G+     R+ ++S F+ +   +    D  +  I T  +    +  +  
Sbjct: 79  ELIEQYTREDKCGN-----RLIYKSSFNSLKAFTKGKLDIPFSDIDTSWLNKYEKWLRSK 133

Query: 128 -HTPSSAIQFLTSMRVLFK------------WAVRQEYVAINPCLSVERPKRKTEGIRPW 174
            +  ++      ++R  +             +   +  +      + +R   KT+ ++  
Sbjct: 134 DNKETTISLMFRTLRSAYNKAIKAKCARKSDYPFDEYKINKFDTTTQKRAIAKTDVLKFT 193

Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234
           T+      + +        +     L  G+  +D      +++QN       QKT  +I 
Sbjct: 194 TEVQPIGKRQYMELSKDIFVFS--YLCGGINFTDIANLAKENIQNGRLHYIRQKTKKLIK 251

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKATKAG 281
           + +P   M+++       + +       K++ T                   K  A   G
Sbjct: 252 IGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQKQNRIHKILGKVNKNLKLLAADLG 311

Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           V    + +  R   A++   +G     +    G   +   + Y    D  ++  +  + +
Sbjct: 312 VEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQV-DEAMKNL 370


>gi|322388701|ref|ZP_08062300.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
 gi|321140490|gb|EFX35996.1| phage integrase family site-specific recombinase [Streptococcus
           infantis ATCC 700779]
          Length = 421

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 111/410 (27%), Gaps = 77/410 (18%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           V K   ++G+I Y  +          G+RI        T        +       +  ++
Sbjct: 13  VIKITKQNGEISYSIKGVYIGTDIKTGKRIT-RTITAKTLKALDRRIIESKIQFEKSGST 71

Query: 64  PRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            ++  +    + L   +         + N+      Y D  II + GD+   +I    I+
Sbjct: 72  TKETIQIGNFESLAEIWFSHFKTWVSSQNTINRVRGYLDTYIIPQFGDYRPEQIEASDIQ 131

Query: 121 SGVESRKHTPSSA--IQFLTS--------------MRVLFKWAVRQEYVAINPCLSVERP 164
             +         A       +              M  +F + +    +  NP  +++ P
Sbjct: 132 LWLNQLAKKAKQAIESGKKRAPKGSAKDFGAMAHKMSDIFDFGITNCGLKNNPAKTIKIP 191

Query: 165 KRKTEGIRPWT---------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +                                 + ++    LL S LR ++     + 
Sbjct: 192 PKPKAIKERIMVLHDEDLKLWLTYLDTLPNTRANRRFKIICNTLLASALRINELLALEIT 251

Query: 216 HLQNNIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMTPI 250
            L      I   KT                              V +P   ++ L     
Sbjct: 252 DLDFETNEIIVNKTLMWKSANKKLNQKGGIICKNSPKTDAGNRRVAVPISTLEGLREFHQ 311

Query: 251 GKETFFINNDKQK------------MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297
               +F  +   +            M         K +  + G+     H  R   A++ 
Sbjct: 312 EMSLYFEEHHLPRSKLIFPTIYGNYMCDRNERATLKKRLIELGLPDYGFHLFRHTHASMM 371

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIR-LGIKN-SRRISSVVD 344
            +AG    EL    G K++     TY + A + +   +     ++  + D
Sbjct: 372 LNAGTNWKELQHRMGHKSITTTMDTYAELAPKKKFEAVDIFLDKLQELTD 421


>gi|301308503|ref|ZP_07214457.1| integrase [Bacteroides sp. 20_3]
 gi|300833973|gb|EFK64589.1| integrase [Bacteroides sp. 20_3]
          Length = 442

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 82/284 (28%), Gaps = 22/284 (7%)

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKS------GDFDYRKITTK 117
              TL  L  E+ +          +R ++  Y      +           D   R +  +
Sbjct: 111 PKETLIALFDEHNEEYAKRVGVDRTRHTYVRYLTGRRHLYDFLQYKYGAEDMALRSVDMR 170

Query: 118 HIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            I +         +    S   +L  +  + + AV+++ +   P    +  +   +  R 
Sbjct: 171 FIENFHFYLSTVLRLKTVSLNDYLILLCKIVRLAVKRKILGRYPFTGYK-LETPPKLHRH 229

Query: 174 WTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T E + +  +      +    R  F F  ++GL  ++       H+  +    K     
Sbjct: 230 LTGEQLAKLMAANLPTYRLCHTRDLFVFSAFTGLGRAEMAELSESHIVTDENGSKWIYIH 289

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA--TQFSIWFKAKATKAGVNKSA-- 286
            + T       +  + +  + K      + +       +      K      G++     
Sbjct: 290 RLKTKVECRIKLLDIPLKIMEKYKGEGTDGRLFYVPVTSSLCRSLKIIGEICGLDCHLTY 349

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  R   AT      G     +    G   +   + Y +  ++ 
Sbjct: 350 YMARHTYATEVCLSNGVPIETISRMMGHSNIRTTQIYAEITNQK 393


>gi|225388191|ref|ZP_03757915.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
 gi|225045749|gb|EEG55995.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme
           DSM 15981]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 81/272 (29%), Gaps = 8/272 (2%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           I +Y         +  +   +E Y  + +         K     +   +      P +  
Sbjct: 14  IDDYCLWLDRCERSRETIQKYEYYLTRFMEFMDCRPVDK-EMVILWKSILRENLAPVTVN 72

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             L ++   FK+    +          +             +       +      +  L
Sbjct: 73  GALAALNGFFKYC-DWQDCRARFLKISKNTFYPESRELSKKEYLRLVRTAAVQGNERLAL 131

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPIGK 252
             E +  SG+R S+     V  L      ++ +     +  T +L    +   A   I  
Sbjct: 132 LLETICSSGIRVSELPFITVAALHKGQAEVECKGRIRTVLLTKKLCRILLDYAARRGIES 191

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309
              F+    + +N +      KA   KA V++     H +R   A           +L  
Sbjct: 192 GMIFVTRSGKALNRSNIWREMKALGLKANVDREKIFPHNLRHLFARTYYAMTKDLSKLAD 251

Query: 310 TYGWKTVDQAETYT-KGADRIRLGIKNSRRIS 340
             G K ++    YT +   R R  +++ R I+
Sbjct: 252 ILGHKDINTTRIYTVESGSRHRKQLESMRLIA 283


>gi|167762936|ref|ZP_02435063.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
 gi|167699276|gb|EDS15855.1| hypothetical protein BACSTE_01300 [Bacteroides stercoris ATCC
           43183]
          Length = 342

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 93/317 (29%), Gaps = 34/317 (10%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDY--R 112
           ++           +        R       L    ++  ++ +    ++   G  D    
Sbjct: 21  RKRKKEESPAATGSFSGFA---RGEIARTRLMHRHSTADNYATALRSLLAFHGKKDISFA 77

Query: 113 KITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
           ++ ++ + +  E  +       +   ++ S+R ++  AV Q                   
Sbjct: 78  EVDSRLVDAYGEWLRRKGICKDTLSCYMRSLRAVYNKAVEQGLTEQKEPFGNVFTGISRT 137

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
             R   K D+ + ++   +          +        G+   D        ++  +   
Sbjct: 138 RKRSIEKADINKLRAVQVKPGSFMQLVRDVFLFCFYACGMPFVDVAFLKKSQIKGGMLVY 197

Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA--------- 275
             +KT  ++ ++L     +++         +       +   T +  + +          
Sbjct: 198 HRRKTDQVVQIKLEPCMQEIINRYRSDGSDYVFPFLTSQDEDTAYREYKRKFSYYNKTLK 257

Query: 276 -KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG------- 325
                AGV+K  S++  R   AT++  +      +    G   V     Y +        
Sbjct: 258 TLGKLAGVDKPLSSYVARHTWATLAFMSSVDMSVIAQALGHTDVKTTRIYVEDIGNGKQN 317

Query: 326 ADRIRLGIKNSRRISSV 342
           +   +L  +  R+ SSV
Sbjct: 318 SANKKLLDEVLRKRSSV 334


>gi|331698984|ref|YP_004335223.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953673|gb|AEA27370.1| integrase family protein [Pseudonocardia dioxanivorans CB1190]
          Length = 408

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/391 (12%), Positives = 98/391 (25%), Gaps = 72/391 (18%)

Query: 12  TKERTRHGKII------------YYFRK--GHGRRIRLPYPHE-STFIPAYMSALTGSTP 56
            KE    GK+             Y  R     G      +P         Y+  +   + 
Sbjct: 10  RKEVDPSGKVRRVKTTLHGVGQRYKVRYVDPDGVERSRTFPDRCKAEAEGYLVEVEA-SK 68

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV--NSRISFESYFD-QIIRKSGDFDYRK 113
           +     +      + K     +         +    +R +  S  D +I+          
Sbjct: 69  REGKYVNVHAGKISFKAHAENWL-----KGQSPDRATREALRSRLDSRILPFFATRSVNA 123

Query: 114 ITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
           IT   +R  +        S        T +  +   AV +  +  NPC S    +  +  
Sbjct: 124 ITATTVREWLGQLDDAHLSQNYRTVLFTIVSSVLDAAVEERLIHRNPCKSQAIKRPSSPP 183

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                    +          + +LA       GLR  +        +      ++ ++  
Sbjct: 184 SNVVVWSRKRVDTIEQRIEGRFQLAVVVGAGCGLRQGEILGLSPDDVDRERMVLQVRRQL 243

Query: 231 TIITVELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSI-------------- 271
            I+   L          +++ ++    E    + ++                        
Sbjct: 244 RIVDRTLVFALPKGGKTRVVPLSRGVLERITSHIEEHPPTPITLPWQDPAGEPTPVPMLM 303

Query: 272 ----------------WFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMAT 310
                            ++     AG+         H +R F A++    G +  EL A 
Sbjct: 304 TGENGRLYSGDLFTKVIWQGAFRSAGIEYRKRADGMHALRHFYASVLLSQGVSIKELAAY 363

Query: 311 YGWKTVD-QAETYTKGA----DRIRLGIKNS 336
            G         TYT       +R R  +   
Sbjct: 364 LGHNDPGFTLRTYTHLVPSSFERARAAVDGV 394


>gi|325570747|ref|ZP_08146473.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
 gi|325156593|gb|EGC68773.1| tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755]
          Length = 290

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 83/271 (30%), Gaps = 40/271 (14%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC- 158
             I  K GD    K T  + ++ +   K   ++     + +  +F +A++   +  NP  
Sbjct: 7   KNISEKFGDKRISKYTVPYCQNTINEWKENYATHRALKSYVSKVFDFAIKMNVLTDNPMT 66

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAG 213
               S  +   +T+       +++++F  +    S P     F L  ++G+R  ++    
Sbjct: 67  YVSFSTGKNSHETKKEIYLEADELKEFLYYCENDSFPLTYPFFRLLAFTGIRKGEALALT 126

Query: 214 VQHLQNNIFS-----------------IKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256
              +                          + + +  T+ L    + +L      +  + 
Sbjct: 127 WNDVDFKDRQLTINKTAALDEKNKVVATPPKTSSSNRTISLDQRTVDILKQWRKDQRKYL 186

Query: 257 INNDKQKMNATQ---------------FSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300
           +   +  M   Q               F+             +   HG R    ++  +A
Sbjct: 187 LAYGQNAMQPNQLVFASKNNNYIALTRFNNVLTRICDNHDFPRLKIHGFRHTHCSLLFEA 246

Query: 301 GATAHELMATYGWKTVDQA-ETYTKGADRIR 330
           G +  E+    G   V      YT    + +
Sbjct: 247 GLSVKEVQDRLGHSDVQTTLNIYTHVTKKQK 277


>gi|314931491|gb|EFS95322.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL067PA1]
          Length = 420

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 51/369 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y + G  +R+R      +         L            PR    TL   ++ +  +  
Sbjct: 28  YDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGG-LTLNQWVNIWLATKQ 86

Query: 84  WGS-LAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSM 140
               +   + +     Y   I  K G    +++T + I+  + +      +  +    +M
Sbjct: 87  ASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKTM 146

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED--MQQFKSFWSEGSQ 191
                 AV+   V +N    +  P+++       T  I  W++    M ++ +       
Sbjct: 147 NAALNSAVKAGEVDLNSMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECELH 206

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------IT 234
            R      +  GLR ++            +  +  ++                      T
Sbjct: 207 DRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNRT 266

Query: 235 VELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKA----KATKAG 281
           + LP+ + +   +                 F+      +  + ++  ++        K G
Sbjct: 267 LMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKEG 326

Query: 282 VNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
                       H  RK  A+  A  G      M+  G  +      YT   AD+ R  +
Sbjct: 327 QEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKAL 386

Query: 334 KNSRRISSV 342
           +    +   
Sbjct: 387 EGLSNVYEH 395


>gi|146329482|ref|YP_001209203.1| integrase A1 [Dichelobacter nodosus VCS1703A]
 gi|563255|gb|AAB00935.1| integrase A [Dichelobacter nodosus]
 gi|146232952|gb|ABQ13930.1| integrase A1 [Dichelobacter nodosus VCS1703A]
          Length = 401

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 112/364 (30%), Gaps = 30/364 (8%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALT-------------- 52
            +T + T  G   +   Y+  G  R + L      +   A   AL               
Sbjct: 35  GLTLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSIEAARGEALELRYHLRQGLDPLAE 94

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDY 111
               +  Y+   + +  T +++  E+ +                +  +Q +    G    
Sbjct: 95  RKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPI 154

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +I+   +   +E     P +A +    +R +F +A++ + ++ NP +++ +  R T   
Sbjct: 155 SRISPPELLKVMEKLYDRPETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAK 214

Query: 172 RPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +P              +     +  LA   L+ +  R  +      Q LQ N + I  ++
Sbjct: 215 QPSLPARELGIFFKQLDTYGNPKTALALRLLILTMTRSGELRFGQWQELQGNEWHIPAER 274

Query: 229 TGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                   +P  D  +++L      +            N             + G     
Sbjct: 275 MKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRA 334

Query: 286 -AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAE-TYTKG---ADRIRLGIKNSRRI 339
             HG R  ++T   ++G      +         +     Y +     +R R+    +  I
Sbjct: 335 VPHGFRATASTAMNESGLWNPDAIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI 394

Query: 340 SSVV 343
              +
Sbjct: 395 RKKI 398


>gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium]
          Length = 163

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        K  A+ A +NKS   H +R   AT   ++GA    +    G ++++  
Sbjct: 97  HHLHDNTLHKAIKTAASLARINKSVSCHTLRHSFATHLLESGADIRSVQELLGHESLETT 156

Query: 320 ETYTKGA 326
           + YT   
Sbjct: 157 QIYTHVL 163


>gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3]
 gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3]
          Length = 373

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 86/336 (25%), Gaps = 35/336 (10%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY-------RK 80
             G+R+R           A+          + ++         +  L+  +        K
Sbjct: 51  RTGKRVR-KKFSTKGEAKAFELHTIREIDDKPWMGIKPDNRR-MSELLDTWWSIHGHTLK 108

Query: 81  S-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139
           S      L   +     +     +++    DYR       R   +S + +P++    L  
Sbjct: 109 SGKQARDLIAKTIEGLGNPIAYHLKERDYLDYRA-ARIPYRGKNKSIEISPTTHNLELIY 167

Query: 140 MRVLFKWAVRQEYVAINPCLSVERP---------KRKTEGIRPWTKEDMQQFKSFWSEGS 190
           ++ +FK  ++         +    P               I  +        +       
Sbjct: 168 LKGMFKKLIKYNQWKYPNPVEAIEPIRTSEKNLAYLTKPQIEEFLFNLKNFNRVITVSIP 227

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           Q  +  +  L +G R S++       +     +    K     +V +       +    +
Sbjct: 228 QLIVISKICLATGARISEALTLTRSQVAEFKLTYTETKGKKNRSVPISPALYHEILDIAV 287

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGATAH 305
                F    K                 +A  N        H +R   A+          
Sbjct: 288 SDHKIFDTTYKDAW----------RYIKRALPNHVPSGQATHVLRHTFASHFMMNKGDIL 337

Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341
            L    G   ++Q   Y+  A    +   +   + +
Sbjct: 338 VLQRILGHTKIEQTMAYSHFAPEHLMQAVHLNPLEN 373


>gi|53713347|ref|YP_099339.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
 gi|52216212|dbj|BAD48805.1| tyrosine type site-specific recombinase [Bacteroides fragilis
           YCH46]
          Length = 409

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 90/282 (31%), Gaps = 26/282 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L+  Y +               ++   F++  +++           D    ++  + I
Sbjct: 111 RTLLEVYAEHNEKCRALIGKEYTESTVTKFDTSINRLKEYIRSCYHRDDIMLAELDGQFI 170

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R      K       +SA++ L +++ + + A+  +++  +P   +   + +        
Sbjct: 171 RDFDFWLKTEKHCQNNSALKHLKNLKKVVRIALANDWIKKDPFYGIHFKQEEVNVEFLLR 230

Query: 176 KEDM--QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +E       +       Q R  F F  ++ L   D  +   +HL  +       +     
Sbjct: 231 EELDVLMNKEFTIKRLEQVRDVFVFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQK 290

Query: 234 TVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286
           T ++ +        ++L       E          ++  + + + K  A   G+ K    
Sbjct: 291 TNQMCNVPVLSIPQRILRKYDDNVECIKKGVLLPVISNQRMNAYLKEIADVCGIAKRLTT 350

Query: 287 HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
           H  R  +AT+       +   +    G   +   + Y K  D
Sbjct: 351 HVARHTAATVVFLANDVSMENVSKILGHSNIRMTQHYAKVLD 392


>gi|167993847|ref|ZP_02574940.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|168241496|ref|ZP_02666428.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168462602|ref|ZP_02696533.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194448390|ref|YP_002045925.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197262125|ref|ZP_03162199.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|194406694|gb|ACF66913.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195633903|gb|EDX52255.1| integrase [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197240380|gb|EDY23000.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205328220|gb|EDZ14984.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|205339104|gb|EDZ25868.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|312912865|dbj|BAJ36839.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321224515|gb|EFX49578.1| Phage integrase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 284

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 86/279 (30%), Gaps = 22/279 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129
              I  Y       +L+VN+     +    +  K G+    ++TT+HI   +ES   +  
Sbjct: 2   SAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITEGK 61

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
            + A    + +  +F+ A+ + ++  NP  +   P+ K    R   +       +     
Sbjct: 62  NTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMP 121

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------ITV 235
           +   LA +  L +G R  D        + +N   +   KTG                   
Sbjct: 122 AWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLG 181

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVR 290
            + D    +     +       N+    ++    +  F      +GVN      + H +R
Sbjct: 182 TVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIR 241

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              A                 G  + +  + Y    D  
Sbjct: 242 -SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 279


>gi|119952620|ref|YP_950401.1| phage integrase family protein [Arthrobacter aurescens TC1]
 gi|119951750|gb|ABM10659.1| phage integrase family domain protein [Arthrobacter aurescens TC1]
          Length = 326

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 76/312 (24%), Gaps = 48/312 (15%)

Query: 58  REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116
               +  +    T+  ++ E+         +  +  +++   D  I    G     +   
Sbjct: 6   PPAKHPGKPGVPTVAGVVQEHIDLLVRP--SPGTIRTYQRILDLHIQNTIGHIPIDEFGY 63

Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
           +     ++        P S       +      A    YV+ NPC  V  P  +  G   
Sbjct: 64  REDMRWIKGLSAEGIAPKSIHNMHGLLSAAMTTAELLGYVSANPCRRVPLPTVERAGDEG 123

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
                 +            +   +FL+ +G R  ++    V  +         +      
Sbjct: 124 MFLTHAEFGLLIECMHEPYKTLVQFLVMTGARFGEATALRVADIDLRSTPPTARINKAWK 183

Query: 234 TVELPDGFM--------------------------------KLLAMTPIGKETFFINNDK 261
                  ++                                +LL  T  G         +
Sbjct: 184 RDAQSGYYIGPTKTGAGKRTIGLNPALVNLLVPLVASRPGSELLFTTAQGHRVSHKPFWQ 243

Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA-TAHELMATYGWKTVDQ 318
                T         A   G+ K+   H +R   A+     G  +   +    G  +V  
Sbjct: 244 HHWVPTVL------AARARGLTKTPRIHDLRHTHASWLIQDGVLSLFAISRRLGHASVRT 297

Query: 319 A-ETYTKGADRI 329
             + Y     + 
Sbjct: 298 TEQVYGHLMPQA 309


>gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6]
 gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6]
          Length = 311

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 69/264 (26%), Gaps = 25/264 (9%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLF 144
           +  +   +  Y   +        + ++    I + +    +    PSS      ++R  F
Sbjct: 37  STKTIELYALYVIGLFNY-AKKSFNQLKAWDIDAYLRHLTNKGLKPSSRNTAAATLRSFF 95

Query: 145 KWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLA 195
           +  V      V     L  +R   K       +    +        G        +  + 
Sbjct: 96  RHLVDSGVCTVNPAAFLKRKRNDGKGSLPGHLSHSLGRDELERLFAGMEEVGAPFRDIVL 155

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
           F  L  +GLR  ++      ++ N     +     K      V LP      L       
Sbjct: 156 FRVLFMTGLRAEEAVSLKWMNVINWQGRWYLDVLGKGSKARRVYLPQKAQAALEELRRHT 215

Query: 253 ETFFIN-------NDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303
                        +  + ++        K       +  + S H  R    T  A  GA 
Sbjct: 216 SPRPEYPIFENLRHRGRPISRHGLYALVKKWSSLVISRGDVSPHWFRHSCFTQLASRGAR 275

Query: 304 AHELMATYGWKTVDQAETYTKGAD 327
              + A  G   +     Y + A 
Sbjct: 276 LESIQALAGHANIQTTMHYNEAAQ 299


>gi|315154645|gb|EFT98661.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX0043]
          Length = 351

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/341 (10%), Positives = 100/341 (29%), Gaps = 28/341 (8%)

Query: 27  KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86
             HG   R+      T   A   A+     K + I+  R++  +       +        
Sbjct: 18  YKHGVNNRITKTF-KTKAEAKRWAMQHEIAKGDGIDLARRQD-SFSSFYENWVYIVKKND 75

Query: 87  LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLF 144
           +   + I++      + +   D    ++    ++  ++     H+  +  + L  +R   
Sbjct: 76  VRPATFINYTRTIPVVKKLFKDIKLNELNDLVVQMKIDEYGETHSRKTTTELLLKLRTSL 135

Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQPRLAFEFLLY 201
           ++A  +  +  +    V+   ++ E        +     +     +   +  +     L 
Sbjct: 136 RYAYGRNLLVSDFAGLVKTRGKELEKRNKALSISDFKKLRSYLLQNYNKEFYVMVLLALE 195

Query: 202 SGLRCSDSCRAGVQHLQNN-----------IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           +G R  +        +                  + +   +  TV +     +++     
Sbjct: 196 TGARRGELLALTKNDIIEYGIKIERSVSPTSPDTRLKTKRSKRTVTINKDVYEIINTLIP 255

Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA-GATAHELM 308
            +  +  + D  + +A            K  + + + HG+R   A+            + 
Sbjct: 256 KENGYLFDPDGFQQSAK-----LARLLKKLNIPRTTFHGLRDTHASFLFSNDNIRLDYIS 310

Query: 309 ATYGWKTVDQAETYTKGA--DRIRLGI-KNSRRISSVVDSD 346
              G   +     Y      ++  L   +    ++S+ D D
Sbjct: 311 QRLGHSNLQTTMNYYLELMPEKKHLQDTEALDLLNSLKDED 351


>gi|329889249|ref|ZP_08267592.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844550|gb|EGF94114.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568]
          Length = 417

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 109/385 (28%), Gaps = 51/385 (13%)

Query: 12  TKERTRHGKII-----------YYFRKGHGRRIRLPYPHEST---FIPAYMSALTGSTPK 57
            K+  + G  +           Y +R    R       +         A    +      
Sbjct: 17  YKKTDKDGLYVLVTPSGGIAFKYDYRFNGRRETVTFGTYGPAGLSLAKAREKLIDAKRQI 76

Query: 58  RE---------YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSG 107
            E          +    K+  + + + + +   A    +A ++R    S F  +++ +  
Sbjct: 77  AEGVSPALDKQRVKRRLKEAQSFEQVANRWMDHA---PMADSTRQMRRSIFVREVLPQWR 133

Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165
           +    +IT   +R+   S      P++AI     ++ ++ +A+       NP   V    
Sbjct: 134 NRLLNEITPNDLRAHCLSIVERGAPATAIHVRDIVKQIYGYAILHGEKIANPADDVGPSS 193

Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
             T   R       +        G        RL  +F+L S +R S+        +   
Sbjct: 194 IATFRPRDRALSPSEVRIMLGLLGDVATLPTIRLGLKFILLSMVRKSELQDGVWDEVDFE 253

Query: 221 IFSIKTQKTGTIITVELP----DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI 271
                  K     +           + +L                  +    M+   F+ 
Sbjct: 254 NAVWSIPKERMKRSRPHNVYLSTQMLDILIALKTCAGNSHYILPSRYDADAPMSRATFNR 313

Query: 272 WFKAKATKA---GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
              A A +A   G+     + H +R+  +T+  + G  +  +      +       Y K 
Sbjct: 314 VTTAIAERAEKNGLPLEPFTVHDLRRTGSTLLHEMGFNSDWIEKCLAHEERSSRGVYNKA 373

Query: 326 --ADRIRLGIKNSRRISSVVDSDDP 348
               + R   +      +  +   P
Sbjct: 374 EFEGQRRHMAQQWSDAVTAWEEGRP 398


>gi|319940150|ref|ZP_08014503.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
 gi|319810621|gb|EFW06951.1| phage integrase family domain-containing protein [Streptococcus
           anginosus 1_2_62CV]
          Length = 421

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 113/394 (28%), Gaps = 75/394 (19%)

Query: 11  VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           VTK   ++G I Y  +          G+RI        T        +       +  ++
Sbjct: 13  VTKTTKKNGDISYSIKGVYIGTDVKTGKRITKTITV-KTLKSLDRKIVEAKIQFEKSGST 71

Query: 64  PRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIR 120
            ++  +    + L   +  +      + N+      Y D  II + GD+   +I    ++
Sbjct: 72  IKETIQIDNFESLAEVWFSNFKTWVSSQNTINRVRGYLDTYIIPQFGDYKPEQIEPSDVQ 131

Query: 121 SGVESRKHTPSS-----AIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVERP 164
             V                +               +  +F + +    +A NP  +++ P
Sbjct: 132 LWVNKLARKAKKSVDSGVKRAKKGSAKDFGAMTHKVSDIFDFGITNYSLATNPAKTIKIP 191

Query: 165 KRKTEGIRPW---------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
            +                 +               + ++    LL S LR ++     + 
Sbjct: 192 PKPKANKERIMVLHDNELKSWISYLDTLQNTRANRRFKVICNTLLASALRINELLALTIH 251

Query: 216 HLQNNIFSIKTQKTGTI-------------------------ITVELPDGFMKLLAMTPI 250
            L  +   I   KT                              V +P   +K L     
Sbjct: 252 DLDFDTNEIIVNKTLMWKSANKKLGIKGKVVCKRTPKTDSGNRRVAVPASIIKELKNFHD 311

Query: 251 GKETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKS----------AHGVRKFSATIS 297
               +F  +   K      T +  +   +  +A + K            H  R   A++ 
Sbjct: 312 EMNLYFEKHGLPKSTLIFPTIYGNYMCDRNERATLKKRLSALSLPDYGFHLFRHTHASMM 371

Query: 298 ADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330
            +AGA   EL A  G K++     TY + A + +
Sbjct: 372 LNAGANWKELQARMGHKSITTTMDTYAELAPKKK 405


>gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
 gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii
           CRIS 21A-A]
          Length = 456

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 78/284 (27%), Gaps = 27/284 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE- 124
              I  +R+       +         +   +           D   +K  T  I+   E 
Sbjct: 155 DEYIDRFRERVGI-DRSERRLKCLLLFRKHLSEFLRCRYHVDDIPVQKADTALIKDLEEY 213

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +    +++  +LT +  L K   ++  +   P +                +E  + 
Sbjct: 214 FAKEKGFKLNTSAGYLTMLASLLKDLHKRHIIDSYPFIGHSIRWDVGTPRYITREEVNKI 273

Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIIT 234
                +E        R  F F  Y+GL  +D      +H+ +     +  K +     + 
Sbjct: 274 AALTDNELQGYEQVSRDMFLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVC 333

Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGVNKSA-- 286
                     +     G  T    ++  K            +I  K  A   G+ K+   
Sbjct: 334 HIPLLPEASAIIERYKGIHTRAFRHEPPKGYLLPIPGCDTLNIHLKKIARLCGIQKTLTY 393

Query: 287 HGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           H  R   A+      G +   +    G   +   + Y + +   
Sbjct: 394 HMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPER 437


>gi|225018205|ref|ZP_03707397.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
 gi|224949002|gb|EEG30211.1| hypothetical protein CLOSTMETH_02143 [Clostridium methylpentosum
           DSM 5476]
          Length = 396

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 96/378 (25%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K     GK  + +         +P           +S        ++ ++      
Sbjct: 25  RYVYKYTDIFGKPQFVYAWK-----LVPTDKTPAGKRDDISLREKEKQIKKDLDDGIDTV 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSG-- 122
               T+  L  +  K+    ++  N+ +  +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYEK--KNNQRKNIKRNTELGRQYLMNVLENDPLGMRAIDTVKQSDAKEWAI 137

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDM 179
            +  + ++  +   +  S++  F  A++ + +          +  +  TE     T E  
Sbjct: 138 RMNGKGYSYKTIDNYKRSLKASFYMAIQDDCIRKNPFHFKLSDVLEDDTEAKVILTPEQE 197

Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++   F    +  S+ R     LL +GLR S+ C         N       +        
Sbjct: 198 EKLLAFMETDNVYSKYRDEVILLLETGLRISELCGLTTHIDMPNRVINIDHQLLRDTEVG 257

Query: 232 ---------------IITVELPDGFMKLLAMTPIGKETFFINNDKQ------------KM 264
                           +T        ++L      +                        
Sbjct: 258 YYISTPKTKNGKRELPLTERAYQALERILKNRGKAQPLVVDGYSNFLFLNSEGLPKVAGN 317

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +      K             + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YESMVRGLIKKYNKTHKDKLPNITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|223932162|ref|ZP_03624166.1| integrase family protein [Streptococcus suis 89/1591]
 gi|223899143|gb|EEF65500.1| integrase family protein [Streptococcus suis 89/1591]
          Length = 399

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 111/369 (30%), Gaps = 47/369 (12%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKG----HGRRIRLP------YPHESTFIPAYMSAL 51
           T S +    V       GKI Y    G     G+R++             T   AY   +
Sbjct: 3   TKSSKKYKGVYC--DNKGKIFYQIDLGIDPVTGKRVQKKARKNQYGKTFETMKEAYDELV 60

Query: 52  TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110
                    ++       T +  +++ Y ++      +V +  +   +    I+  G   
Sbjct: 61  RIKYEFANKVSL-ENYNMTFENYMNKIYLRAYKQKVQSV-TYKTALPHHKLFIQYFGSKP 118

Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
            R +T +   +        ++ + A    +  +    +A R  Y++  PC +++ P+ K 
Sbjct: 119 LRALTPRDCEAFRLHIIENYSENYAKNLWSRFKACMGYAERLGYISDMPCKALDNPRGKH 178

Query: 169 EGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----- 219
                WT  + Q F         E  Q   A      +G+R S+      + +       
Sbjct: 179 PETPFWTYAEFQTFVKSFDLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFENKFL 238

Query: 220 -------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK----- 261
                             +T+       +EL D  +++L +    +      +       
Sbjct: 239 KVHTTLEKDENGNWYRKDQTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISRFG 298

Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKTVDQA 319
                +      K KA + GV   +  G+R   A+   +        +    G       
Sbjct: 299 DPFCKSTICRIIKRKAQQVGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKSTT 358

Query: 320 -ETYTKGAD 327
             TY+   +
Sbjct: 359 LNTYSHWFN 367


>gi|331087330|ref|ZP_08336398.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408356|gb|EGG87831.1| hypothetical protein HMPREF0987_02701 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 420

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/386 (13%), Positives = 106/386 (27%), Gaps = 60/386 (15%)

Query: 18  HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           +GK  + +        +LP   +       +    G          P  K  T+  L+  
Sbjct: 31  NGKAHFVYSWRLEPTDKLPVGRKPCLSLRELEKQIGYDLDNRL--DPVGKNITVNELVDR 88

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTK----HIRSGVESRKHTPS 131
           Y  +     +  N+++++ ++   I++    GD    ++ T      +    +      S
Sbjct: 89  YLATK--TGVKYNTQMNY-NFVKNILKAHPFGDTKISRVKTSDAKLFLIKLQQEDGRGYS 145

Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S       +R  F+ AV  + +  NP            +      TKE M +F  F  + 
Sbjct: 146 SIKTIRGVLRPAFQMAVDDDVLNKNPFGFQLAGVVVNDSVTREAITKEQMNKFLKFVHDD 205

Query: 190 SQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------- 232
           +     +E +    ++G+R S+ C   +  +      +                      
Sbjct: 206 NVYCKYYEVIYILFHTGMRISEFCGLTISDIDLANNIVNIDHQLQRTSDMKYILDTTKTD 265

Query: 233 ----------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
                             +       +   M        F++ +     A  +       
Sbjct: 266 AGTRKLPITQDVADCFRAILEDRKKPRYEKMIKGHTGFLFLDKNGNPEVAMHWQHRLNHM 325

Query: 277 ATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK---- 324
             +          N + H  R    +  A +G     L    G   +     TYT     
Sbjct: 326 VKRYNDIYRVQMPNITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNTYTHWGLE 385

Query: 325 -GADRIRLGIKNSR-RISSVVDSDDP 348
             AD ++      + R       + P
Sbjct: 386 DAADELKKMEDVEKVRREMEKGQEKP 411


>gi|160937705|ref|ZP_02085065.1| hypothetical protein CLOBOL_02598 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439350|gb|EDP17102.1| hypothetical protein CLOBOL_02598 [Clostridium bolteae ATCC
           BAA-613]
          Length = 391

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 79/300 (26%), Gaps = 45/300 (15%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
            T+  L  E+       + ++ +    E ++++                 ++        
Sbjct: 75  MTMDKLFQEWLVYKEAVTDSLKTIRRHEQHWNKYFAHLKSKKVASYDRLELQKECNQLVK 134

Query: 129 TPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----------- 173
           T + + +      T +  +F +A  + Y+  +    V+   +  +  +            
Sbjct: 135 TNNLSSREWQNIKTILSGMFYYASEKHYIQDDIMRDVKITVKFRQVNKKTGKTETFLTDE 194

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
                      F        LA  F  + G R  +          +       ++     
Sbjct: 195 LDTLIRYLNAEFARTHDMAILAVRFNFFVGCRVGELVALKWCDFLDIQHLHVCREEIKES 254

Query: 233 ----------------------ITVELPDGFMKLLAMTPIGK------ETFFINNDKQKM 264
                                   + L  G +++L    +        + F    D  ++
Sbjct: 255 VHDGDKWKDVYTVVEHTKTHTDRIIPLMPGAIRILNDIRLKMAPGSSDDDFIFMRDGSRI 314

Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
            + Q +   +    K G+  K +H +RK  A+  +        +    G   +     Y 
Sbjct: 315 TSRQINYVLEKACKKIGIPVKRSHKIRKTVASRLSAGNVPLDSIREMLGHSNLSTTLGYI 374


>gi|270157627|ref|ZP_06186284.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
 gi|269989652|gb|EEZ95906.1| phage integrase family site-specific recombinase [Legionella
           longbeachae D-4968]
          Length = 412

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 114/359 (31%), Gaps = 26/359 (7%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61
           TP   L  F+ + +  +G+  ++   GH   + L       FI           PK +  
Sbjct: 33  TPKG-LKTFLYRYKI-NGQ-RHFITIGHYPAMSLSEAK-KRFIDLSDIRHGEVNPKEQIA 88

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121
              +K+ +T+K LI  +  +      A      ++     II   G+     + T+ I  
Sbjct: 89  EQKQKEQSTVKNLILHWYTNYIEKHRAQ-PLQIWQHIKVDIIPLLGNKKLEHLKTREITQ 147

Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQ--------EYVAINPCLSVERPKRKTEGI 171
            ++    + +P  A + L++++  F +AV +          +       +E+P+ +   +
Sbjct: 148 ALDKIVGRGSPVHANKVLSTLKQAFNYAVSRGEMLVNPAMTIRARDIGGIEKPRERYLSL 207

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
                              Q R A + +L +G+R  +   A                  T
Sbjct: 208 DEVKTLWQFLDSEEHGTSFQIRAALKIILLTGVRTGEIRVAKWSEFDFENSLWTIPAENT 267

Query: 232 IITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283
              + +     +L       L      +      + +  ++            ++ G+  
Sbjct: 268 KTNIVMRIHLTELTKKVLRELKAGSDSEYVITGADGQSILSDRAMPRAVIRIQSRVGIPH 327

Query: 284 KSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
            +AH +R+  AT            +    G K      TY K     + +  ++    +
Sbjct: 328 WTAHDLRRTFATQLGQTLNVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEQWTSL 386


>gi|154492977|ref|ZP_02032603.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
           43184]
 gi|154087282|gb|EDN86327.1| hypothetical protein PARMER_02619 [Parabacteroides merdae ATCC
           43184]
          Length = 402

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 101/333 (30%), Gaps = 45/333 (13%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSP-------RKKPTTLKWLISEY------------- 78
                  +Y++AL     K  +              P T+  +I  Y             
Sbjct: 56  GSGEGRKSYLAALKNQIDKDLFRIKKCINRLNQEDSPFTVDRIIELYTVPEGNCTFLLYG 115

Query: 79  ---RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
                        V +  ++++  +   +     GD    ++ +  + +     K T   
Sbjct: 116 KELLVELRQIG-KVRTAGTYQNALNSFERFRGHRGDIPLDELDSNQMITYESWLKGTGVC 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+++  ++ ++R ++  AV +  V                  R  +   +++ +      
Sbjct: 175 PNTSSYYMRNLRAIYNRAVSEGLVVQRNPFKHVYTGIDKTKKRAVSLSVIRRIRDLDLNK 234

Query: 190 SQ---PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                 R  F F  Y+ G+   D      + LQN I + + +KTG  + ++      +L+
Sbjct: 235 KSLIFARDIFMFSFYTRGMSFVDMAFLKKKDLQNGILTYRRKKTGQQLFIKWEKPMQELI 294

Query: 246 AMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294
                        I +        + +  A + +   K    +   G+  + +  R   A
Sbjct: 295 DKYNTSETSYLLPIIQNNGVDEWHQYQNEAHRINRNLKYIGKQIGLGIPLTTYVARHAWA 354

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +I+     +   +    G  +      Y    D
Sbjct: 355 SIAQSKNVSLPVISEALGHDSEQTTRIYLASLD 387


>gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666]
 gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666]
          Length = 286

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 72/266 (27%), Gaps = 20/266 (7%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KH 128
            L      +      A  ++ S+     ++ +     D    T + +++ +       + 
Sbjct: 3   ELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYY-RRDPALYTPQEVQAYLLHMVKDEQL 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
           + SS  Q   + + LF     Q  +            +           +          
Sbjct: 62  SYSSMNQAACAAQFLF-----QTVLGHGREHFHVPFAKVPAKQPELLAREEISRLLVACT 116

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKL 244
             + R+  + +  SGLR S++C   V  + +    +  +             L    + L
Sbjct: 117 HPKRRMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKGGKGRYSILSPTLLDL 176

Query: 245 LAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298
           L                    Q MN       + A    A + KS   H +R   AT   
Sbjct: 177 LRAYVRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLL 236

Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324
           + G     +    G   +     Y  
Sbjct: 237 EGGVDLFTIQKLLGHGHIATTGRYLH 262


>gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
 gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus
           sp. PCC 7335]
          Length = 326

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 97/292 (33%), Gaps = 29/292 (9%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------ 128
                +      LA N+R  +E    Q         ++++T + I    +  K       
Sbjct: 29  WQRVEEFLRVRELAENTRKVYERQLRQFYEWV-KKPWQQVTHRDIDRYKQHLKALPSKRG 87

Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQF 182
              +P++  Q + S++  FKW   ++Y++ NP L++E+ K   +  +   + ++      
Sbjct: 88  GSLSPATINQSINSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKDLDEAEVDALFDG 147

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
            ++  E     LA   LL  GLR  +     ++        +   K G+   V L    +
Sbjct: 148 LNYRGESEVRDLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAI 207

Query: 243 KLLAMTPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287
             L           +              N+  +++         K  A  + + +   H
Sbjct: 208 MALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPH 267

Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
            +R   AT     G  +         K+      Y+  A  +++  +    +
Sbjct: 268 RLRHTCATSLVAQGMDSILAKRLVRIKSDRVFARYSDHALDMKM-EEAFDEL 318


>gi|13475785|ref|NP_107352.1| CP4-like integrase [Mesorhizobium loti MAFF303099]
 gi|14026541|dbj|BAB53138.1| CP4-like integrase [Mesorhizobium loti MAFF303099]
          Length = 420

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 105/369 (28%), Gaps = 44/369 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRL------PYPHESTFIP-----AYMSALTGSTPK 57
            +       G I +      +GRR  +                     A  +   G +P 
Sbjct: 26  GIYVRVMPSGAISFRLDYRLNGRRETIYLGRYGRDGISLALAREKCLDAKRAIGEGRSPA 85

Query: 58  REYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            E     R+  +  +      ++  +A    +A ++R    + F++ ++    +    +I
Sbjct: 86  IEKQRDKRRLKEAKSFGEFGEKWLTAA---PMADSTRAMRRAIFERELLPVWRNRLLTEI 142

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+   +      P++AI     ++ ++ +A+       NP   V      T   +
Sbjct: 143 TPDDLRTHCGAIVERGAPATAIHVRDILKQIYGFAILHGEKVANPADEVGPASIATFVPK 202

Query: 173 PWT-----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             +        M +     +     RL     L + +R S+   A    +          
Sbjct: 203 DRSLSPSEIRVMLKQLEHVATIPTIRLGMRLYLLTMVRKSELQDAVWDEVDFENAVWTIP 262

Query: 228 KTGTIITV-ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----------FSIWFKA 275
           K     +         + L +    K     +                      +     
Sbjct: 263 KERMKRSKAHNVYLSRQALDIMIALKTCAGNSRYLLPSRYDADAPMSRATFNRITYAVVE 322

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG---ADR 328
           +A   G+     + H +R+  +T+  + G  +  +      +    +   Y K      R
Sbjct: 323 RAKANGLPLEPFTVHDLRRTGSTLLNELGFNSDWIEKCLAHEDGRSSRGVYNKAEYEVQR 382

Query: 329 IRLGIKNSR 337
             +  + S 
Sbjct: 383 RHMMQEWSD 391


>gi|157164811|ref|YP_001466806.1| ferredoxin, 4Fe-4S [Campylobacter concisus 13826]
 gi|157101475|gb|EAT98613.2| phage integrase [Campylobacter concisus 13826]
          Length = 288

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 17/267 (6%)

Query: 73  WLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128
            L   Y        L+ ++ R    +Y        G  D R+I    I+         ++
Sbjct: 3   ELFDNYISYYELI-LSPSTFRSDIATYNKHFKNSLGLRDIREINFIDIQKFCNDLIKQEY 61

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
              +    +  ++V+FK  ++ E ++ NPC  +E PK   +    ++    ++F     E
Sbjct: 62  KIKTIKNIVAKLKVIFKLGIKLELISKNPCDFIELPKFDNKRYFDYSIAIQKRFIKAICE 121

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248
            +       F L  G R ++        +     +            ++       L   
Sbjct: 122 NTDDNSDIFFFLLHGRRKNEVLSLKFSDINFKTRTYTIPFKINKAKRDMIYKMSDELYSR 181

Query: 249 PIGKETF-------FINNDKQKMNATQF---SIWFKAKATKAGVNK-SAHGVRKFSATIS 297
              +                  +   +F      + +   +  + K   H +R    T S
Sbjct: 182 LYKRYIVAKEQKRLNDYVFINPITDDKFKDLRKSWASLLKRNNLPKIRLHDIRHLIGTYS 241

Query: 298 AD-AGATAHELMATYGWKTVDQAETYT 323
            +       ++  T G   +   + Y 
Sbjct: 242 INYLKIPIEQVSFTLGHTNIITTQKYI 268


>gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 2/125 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           L  S                +                +  +     I K+     + +  
Sbjct: 39  LTRSRLLHEEDLQRGYGRVYLPYALERKYPHAVTEWTWQWVFPANKISKDPRSDQSRRHH 98

Query: 264 MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +        K    +AGV K    H  R   AT   ++G     +    G  +V   + 
Sbjct: 99  ASEDMLQSEVKRAVKRAGVAKRVSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQI 158

Query: 322 YTKGA 326
           YT   
Sbjct: 159 YTHVL 163


>gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 353

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 99/330 (30%), Gaps = 58/330 (17%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---------------F 109
           R    T+   + +Y ++    + +V +RIS+        +   +                
Sbjct: 21  RDVLNTMPGFVRDYFRAIEPTT-SVKTRISYAYDIRIFFKFLLENNPVYKSYKMTDFQVS 79

Query: 110 DYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
           D  +I    I    E  K          +      + ++++R  + +  + + +  NP L
Sbjct: 80  DLERIAPVDIEEYQEYLKVYQNEDKQITNAEKGLARKMSALRSFYNYYYKHQMIEKNPSL 139

Query: 160 SVERPKRKTEGIRPWTKEDM----------------QQFKSFWSEGSQPRLAFEFLLYSG 203
            V+ PK   + I     +++                Q+   +    ++       LL +G
Sbjct: 140 FVDMPKIHDKAIVRLDTDEVALLLEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTG 199

Query: 204 LRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT-----------PIG 251
           +R S+     +  +          +K G  + V       K L              P  
Sbjct: 200 IRVSECVGLDIPDIDFKNNGIKVMRKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEH 259

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMA 309
           +   F++  K++M         K  A +       + H +R    T         + +  
Sbjct: 260 ENALFLSTQKKRMGVQAVENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVAD 319

Query: 310 TYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337
             G + V+   + Y    D R R      +
Sbjct: 320 VLGHRDVNTTKKHYAAIDDARRRQAASAVK 349


>gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 399

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 95/370 (25%), Gaps = 59/370 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRL---------PYPHESTFIPAYMSALTGSTPKREYINS 63
           + + + G+  + +    G+   +         P P      P+                 
Sbjct: 17  EYQRKDGRYRFRYIDEDGKEKNVYSWRLDKNDPMPKGKKREPSLREKEKQIEADLFDRIV 76

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
                 T+  L+ +Y        +  N+   +++  + + ++  G+    K+     ++ 
Sbjct: 77  TNGGNYTVLELVEKYVSLK--TGVRHNTVAGYKTVINMLKKESFGNLRIDKVRLSDAKAW 134

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTK 176
           +   +       SS       +R  F+ AV  + +  NP            +      T+
Sbjct: 135 LIKLQQIDGRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSVTREAITR 194

Query: 177 EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +  +    F  E    S+   A   L ++GLR S+ C   V  ++     IK        
Sbjct: 195 KQQRDLLKFIQEDKHFSRYYDAIYILFHTGLRISEFCGLTVSEIEYGEMRIKVDHQLQRT 254

Query: 234 TVELPD---------------------GFMKLLAMTPIGKETFF-------------INN 259
                                       F +++A     K                    
Sbjct: 255 AQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMP 314

Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                         +       +     + H  R    +  A +G     L    G   +
Sbjct: 315 MVALHWEKYLEHIIQKYNKIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 374

Query: 317 DQA-ETYTKG 325
                TYT  
Sbjct: 375 SVTLNTYTHV 384


>gi|255690845|ref|ZP_05414520.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
 gi|260623574|gb|EEX46445.1| site-specific recombinase, phage integrase family [Bacteroides
           finegoldii DSM 17565]
          Length = 267

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 75/257 (29%), Gaps = 12/257 (4%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134
           + ++      G++A N+  +++   +    +  D + R +    +          P +  
Sbjct: 2   VEKFETFLRQGNMADNTISAYQYAVNDFYSRHKDLNKRNL---LLYKTYLIETFKPKTVN 58

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             + ++     +  +      +  +              +      + K    E  +   
Sbjct: 59  LRIQALNKYLDFVNKTRLRLKSVKVQQRSYLENVISNADY---IFLKNKLKKEENQEWYF 115

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
              FL  +G R S+  +  ++H+    F I T+              D     L      
Sbjct: 116 VVRFLAATGARVSELIQIKIEHVNIGYFDIYTKGGKIRRLFIPKKLRDETKVWLIAINRE 175

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   +++     S   K  A K  +N      H  R   A    +       L 
Sbjct: 176 SGYLFLNRFGERITTRGISQQLKNYAEKYELNTKVVYPHSFRHRFAKNFLEKFNDISLLA 235

Query: 309 ATYGWKTVDQAETYTKG 325
              G ++++    Y + 
Sbjct: 236 DLMGHESIETTRIYLRR 252


>gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +     +  +       +   + T      K+     G+N+  S H +R   AT 
Sbjct: 74  WAWHWVFPSERLSVDPRGGQVRRHHASETGIQGALKSALRAVGINRPASCHSLRHSFATQ 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             ++G     +    G K V   + YT   
Sbjct: 134 LLESGYDIRTVQELLGHKDVSTTQIYTHVL 163


>gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17]
 gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17]
          Length = 411

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 80/287 (27%), Gaps = 21/287 (7%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129
            ++ K    G    ++   + + +  +           D   ++++   I       +  
Sbjct: 118 EDFFKQVDAGLRCPSTYHKYCTVYKHLEEFIKNRYRVSDIALKELSPAFITDFDIFLRTE 177

Query: 130 PSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
                  +      +R +   A    ++  +P +       ++      TK++++Q    
Sbjct: 178 KQCCNNTVWIYMMPLRRMITIAQNHGWMVRDPFVDY-SISAESTDRDYLTKDEIRQLLDL 236

Query: 186 WSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
                     R  + F  ++GL  +D       +LQ +        T    T    +  +
Sbjct: 237 KFRRKSMELARDLYVFCCFTGLSFTDMKNLTKDNLQTSFDGKLWIMTKRQKTGVESNIML 296

Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSATI-S 297
             +    I K       D         +     K      G+ K  + H  R   AT   
Sbjct: 297 LDIPKQIIEKYDGTAKEDYLLPVPQYITACKNIKKIIGLCGIEKEITWHTSRHTMATEIC 356

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI--RLGIKNSRRISSV 342
              G     L    G   +   + Y K       R     S ++S +
Sbjct: 357 LTNGVPIETLSKMLGHTNIRTTQIYAKITHEKESRDMAALSDKLSKI 403


>gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4]
 gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14]
 gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
 gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4]
 gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA]
 gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14]
 gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA]
          Length = 409

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 86/309 (27%), Gaps = 24/309 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYF-DQIIRK 105
           G+   R       +   TL  L   + +           + ++++         + + +K
Sbjct: 92  GAADVRNLFQGSMETQMTLLRLFDRHIEETRERIGIDVCASSMSTYHYARKTLGEFVRKK 151

Query: 106 SGDFDYR--KITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D     +  + IR           ++  ++   L  ++ + + A ++ +      L
Sbjct: 152 YKVKDIAFGALNEQFIREYQSYIEVKCGYSNQTSRHHLALLKRICRIAYKEGFSERYHFL 211

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             + PK+K    +  ++ED ++ +       +  L     L+     + +  A    +  
Sbjct: 212 HFKIPKQKETTPKALSREDFEKLRDLEIPEKRRSLVLTRDLFLFACYAGTAYADTISITR 271

Query: 220 NIFSIKTQKTGT---IITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWF 273
                  + +               +KLL                        +      
Sbjct: 272 ENLFTDDEGSLWLKYRRKKNELTARVKLLPEAIALIEKYRDDLRETLFPNQLYSTLRANM 331

Query: 274 KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K     AG+      H  R   A++   + G     +    G   +   + Y +   +  
Sbjct: 332 KILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKK- 390

Query: 331 LGIKNSRRI 339
              ++  R 
Sbjct: 391 -LFEDMDRF 398


>gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565]
 gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565]
          Length = 406

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 77/257 (29%), Gaps = 17/257 (6%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGV----ESRKHTPSSAIQFLTS 139
             +  ++++      Q I   G  D     IT +   S      +   +  S     L  
Sbjct: 129 RQSKTTQLN----LRQFIESRGMKDIAFSDITEEFAESFKVFLKKELGYRNSHVNHCLCW 184

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199
           +  L   AV +E +  NP   V   K++   +R  ++ ++++            LA    
Sbjct: 185 LNRLIYIAVDREILRANPIEDVAYEKKEPLKLRHISRGELKRMMETPLPDPMMELARRTF 244

Query: 200 LY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKET 254
           ++   +GL  +D+     +H+       K  +     T       +  +A   +     T
Sbjct: 245 IFSSLTGLAYADTRALHPRHIGKTSEGRKYIRVCRAKTDVEAFIPLHPIAEQILELYNTT 304

Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYG 312
                                     G+    S H  R    T+   +G     +    G
Sbjct: 305 DDDRPVFPLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIESIAKMMG 364

Query: 313 WKTVDQAETYTKGADRI 329
              ++  + Y +  DR 
Sbjct: 365 HTNINSTQVYAQVTDRK 381


>gi|150003856|ref|YP_001298600.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
 gi|149932280|gb|ABR38978.1| putative integrase, tyrosine type site-specific recombinase
           [Bacteroides vulgatus ATCC 8482]
          Length = 372

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 106/367 (28%), Gaps = 41/367 (11%)

Query: 13  KERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---- 65
           K++   G++  Y      G  R+  L    ++       +           I + +    
Sbjct: 7   KKQLNKGRVSLYLNYSYNGKRRKEYLGIILDAPTSAERRAENRNKVLIARQIKAKKELEF 66

Query: 66  --------KKPTTLKW--------------LISEYRKSAHWGSLAVNSRISFESYFDQII 103
                       T                 LI +Y  + H     +    +  ++     
Sbjct: 67  LSVEYHLNDIENTFDDILPTDKSNVPDFYILIGQYLDTYHKKDKKM--VRACITHLRLFT 124

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           RK        +T     + +E  +     ++ I +    ++     + ++ +  NP   +
Sbjct: 125 RK-KSLPITLLTKDFCINFLEYLRDHLRGNTPIGYFKKFKMCINKCIEKKLMTSNPTDGI 183

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              +         + +++Q+        ++ + AF F  Y GLR  D  +   + +  + 
Sbjct: 184 RLMQFDEVTKAILSLKEIQKLAITPCPNNEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSS 243

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---AKAT 278
             +   +       +     + L        +     N++       +S   +       
Sbjct: 244 NRLTILQQKVQSHSKNAILHLNLNHTAIKLLQRHKGINEELVFGLPSYSYTLRILNKWVK 303

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +A ++K  + H  R    T     GA      +  G  T    E Y    D ++   K  
Sbjct: 304 RANIHKHITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELK--QKAV 361

Query: 337 RRISSVV 343
             +  ++
Sbjct: 362 DSLPDII 368


>gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae]
          Length = 304

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 81/291 (27%), Gaps = 52/291 (17%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSS 132
           ++ + R+   +   ++ +  ++  +    IR  G      + +  + + +    +    S
Sbjct: 16  VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
                 ++  L  +  +     +     + RP+         T +++ +         + 
Sbjct: 76  VSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG--FLEGEH 133

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------------------- 230
           RL  + L  +G+R S+  +  V+ L  +  +I  ++                        
Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193

Query: 231 TIITVE-------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                              +  + A      +       +  M 
Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253

Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314
              F   FK    +AG+ K  + H +R   AT    +G     +    G  
Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHS 304


>gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
             ++        KA A +A + K  + H +R   AT   + G     +    G K V   
Sbjct: 97  HHLDKVTVQRKVKAAAERARIGKVVTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTT 156

Query: 320 ETYTKGA 326
             YT   
Sbjct: 157 MIYTHVL 163


>gi|186681250|ref|YP_001864446.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
 gi|186463702|gb|ACC79503.1| phage integrase family protein [Nostoc punctiforme PCC 73102]
          Length = 400

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 87/320 (27%), Gaps = 44/320 (13%)

Query: 44  IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQI 102
           +  Y   L         + SPR   T L  L  +Y        LA  +   +   +  + 
Sbjct: 74  LERYKEKLESYKKPLLTLVSPRTPQTDLMELWEQYCAYMKPQ-LAATT---YRRDYARKY 129

Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV----RQEYVAINPC 158
                    + +T           + +P++A + LT +    KWA+     ++       
Sbjct: 130 TNHIKGLPTKDLTQAIAIRDHLLTQLSPNAAKRVLTYLAACCKWAMGSGLAKDNPFAGMS 189

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQHL 217
             ++ PK  ++ I P++K++M      +         F   L ++G R  ++     +H+
Sbjct: 190 EDIKLPKHDSDAIDPFSKQEMNNIIQAFETTRAHYAPFVKFLFWTGCRTGEAIALQWKHI 249

Query: 218 QNNIFSIKTQKTG-------------TIITVELPDGFMKLLAMTPIGK------------ 252
                 I   ++                          +LL                   
Sbjct: 250 NPECTQINFCESYDSQLNIRKGTKTGKARKFPCNTQVRELLLSIRPQDINLESQVFTSPT 309

Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303
                            + +   ++   +       + +    +  R    T+  + G T
Sbjct: 310 GGIISNTRFSTQVWKGGRTSNKNYNGVMQGLLDAGEIERYRCPYNTRHTFITLMLEQGLT 369

Query: 304 AHELMATYGWKTVDQAETYT 323
              +    G       + Y 
Sbjct: 370 VSTVAKLVGNSPEIILKHYA 389


>gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
 gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 86  SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135
           +   ++   +E   + +IR         D  + K+    I +         K   ++ + 
Sbjct: 127 NREKSTAEQYEISLNHLIRFLRKKYNVSDVPFTKLDLSFIEAYDFYLRVELKLKSNTILG 186

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            +  +R + K A+ +  +  +P      P+R     +  T+E++ +      +     L 
Sbjct: 187 IVRHVRKMIKLAIAEGIIYRDPFDGY-APERPKAEQKYLTREELDRLMKTRLDHPSRYLT 245

Query: 196 FEFLLY---SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252
            +  L+   +GL   D C    +H+      +   +T    T    D  +  L    I K
Sbjct: 246 RDMFLFSVFTGLAYRDVCNLTPKHIVRADDGVLWIRTTRQKTGTPCDIPLLGLPKQIIEK 305

Query: 253 ETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI-SADAGATAHEL 307
                 + K    ++  + +   K  AT   +++    H  R   AT      G     +
Sbjct: 306 YKGVAKDGKLLPMLSCGRLNKNLKVIATICKIDRKLIYHAGRHTYATEICLSQGVPIESV 365

Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
               G + +   + Y K  +      ++ +R  S ++   
Sbjct: 366 SRMLGHRDLRSTQIYAKITEHK--IAEDMQRAESRIEDKF 403


>gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
 gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta
           proteobacterium NaphS2]
          Length = 283

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 78/270 (28%), Gaps = 33/270 (12%)

Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
                +I    +   +  ++ +     +  + L ++  +F +AVR +Y+  NP    ERP
Sbjct: 3   HLRVNRINVTTVEKFITGKQESGMNIGTLRKILVTLGQIFNYAVRHQYMDHNPLNEAERP 62

Query: 165 KRK-------TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217
           + +        + I+  + E ++       +  + ++ F   +++G R  +   A  + +
Sbjct: 63  REQAREGERERDKIQILSPEQIKTLLD-QEKNPKFKMLFMLAIFTGARQGEILGAKWEDI 121

Query: 218 QNNI-FSIKTQKTGTIITVELPDGF-----------------MKLLAMTPIGKETFFINN 259
                     +                                KL          F    
Sbjct: 122 DWKNSQIHIQRTFNKSRFFTPKTKTSTRRIDIGPTVLKELRAWKLACPKNEHDLLFPNGA 181

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
                 +      F+       +     H +R   A++  + G     +    G  +   
Sbjct: 182 GGPINYSNLVQRHFRPALKATSLPLIRFHDLRHTFASLLIEQGENVKYIQTQLGHSSPTV 241

Query: 319 A-ETYTKGADRIRLGIKNSRRISSVVDSDD 347
               Y           + + R+ + V S++
Sbjct: 242 TLNVYAHLM--KPTNQEAACRLENTVFSNN 269


>gi|194426812|ref|ZP_03059365.1| phage integrase family protein [Escherichia coli B171]
 gi|194415148|gb|EDX31417.1| phage integrase family protein [Escherichia coli B171]
 gi|195183267|dbj|BAG66808.1| integrase [Escherichia coli O111:H-]
          Length = 365

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 102/343 (29%), Gaps = 31/343 (9%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            + K     G   Y        +  + Y    TF     +   G+    E          
Sbjct: 5   NIEKRLKSDGTPRYRCNVIIKEKGVITYRESKTFPKHAHAKTWGTQKVMELDLYGIPSSN 64

Query: 70  -----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGV 123
                T+++L+ +Y    + G  A  ++       + ++          ++T   +    
Sbjct: 65  AVDGLTVRYLLHKYLNDPNAGGKAGRTK---RYVLELLMDSDISAIKLSELTENDVIEHC 121

Query: 124 ESRKH---TPSSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
             R +    P++    ++ +  +       + +                           
Sbjct: 122 RLRNNAGAGPATVSHDVSYLGSVLDAAKSVYGINYTSNPAKSARPYLLKLGLIGKSNRRN 181

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFL-----------LYSGLRCSDSCRAGVQHLQNNIFSI 224
           +           EG Q R   +             ++S +R  + CR   + L     SI
Sbjct: 182 RRPASDELDMLIEGLQQRSTHKCSKIPFVDILKFSVWSCMRIGEVCRLRWEDLDQEQKSI 241

Query: 225 KTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282
             +        E     + LL     I +     +      N+T  +  F+   +K G+ 
Sbjct: 242 LVRDRKDPRKKEGNHMKVALLGEAWDIVQRQPKKSEFIFPYNSTSVTAGFQRVRSKLGIK 301

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           +   H +R+  A+   +AG +  E+    G ++++   + YT+
Sbjct: 302 DLRYHDLRREGASRLFEAGFSIEEVAQVTGHRSLNVLWQVYTE 344


>gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica]
 gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky]
          Length = 405

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 94/322 (29%), Gaps = 23/322 (7%)

Query: 31  RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90
            + +    H    +    +A +    +        +    L     +Y         + +
Sbjct: 51  PKTQAERQHNKEMLRQAEAARSARLVESHSNKFQLEDRVKLASSFYDYYDKLTASKESGS 110

Query: 91  SRISFESYF---DQIIRKSG--DFDYRKITTKHIRSGVESRKHTP----------SSAIQ 135
           S  ++  +      +    G  +  + +I  K +    +     P          ++A  
Sbjct: 111 S-SNYSIWISAGKHLRSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASS 169

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
           +   +R     A R+  +  NP   V+  K +       T ++++            + A
Sbjct: 170 YFNKVRAALNEAFREGIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRA 229

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255
           F F   +GLR SD  +   + ++                +   +  + L       K   
Sbjct: 230 FLFSCTTGLRWSDIQKLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMG 289

Query: 256 FINNDKQK-----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308
              +  ++       ++  ++     A  AGV  + + H  R   A    + G   + L 
Sbjct: 290 ERQDKAERVFKGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLS 349

Query: 309 ATYGWKTVDQAETYTKGADRIR 330
              G   +   E Y    +  R
Sbjct: 350 RLLGHSELRTTEIYADILESRR 371


>gi|71065925|ref|YP_264652.1| phage integrase [Psychrobacter arcticus 273-4]
 gi|71038910|gb|AAZ19218.1| possible phage integrase [Psychrobacter arcticus 273-4]
          Length = 423

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 106/375 (28%), Gaps = 51/375 (13%)

Query: 14  ERTRHGKIIYYFRKGHGRRIR--LPYPHESTFIPAYMSA-------------LTGSTPKR 58
              R  K     ++ +G+  R  +   H  T   A   A               G     
Sbjct: 34  RIGRQSKRYTLHKRINGKLYRDEVEETHLITLTEAREKASIMMANIKKGMHVYDGLHENL 93

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           E   +      TL+     Y KS     LA  +  +++      ++   +     IT   
Sbjct: 94  EDPKNKTNNVPTLQEAYD-YFKSTK-TGLAKGTITTYDRQIIHKLKDWLNISLNDITKSM 151

Query: 119 IRSGVESR-KHTPSSAIQFLTSMRVLFKWAV------------RQEYVAINPCLSVERPK 165
           I    +   K++ + A   + ++R ++ +              +++ + I          
Sbjct: 152 ISDKHKEISKNSEAQANATMRALRSVWNYCRDSFLGDDEDFLIKEQPIRILNAKKDWNRV 211

Query: 166 RKTEGI----------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           +               +       +         +  R    F +++G+R +++      
Sbjct: 212 KPRTKHIEEEYIGMYLKTLLNYVDRSSHMQAPHSNNARDIMLFFMFTGVRLNEAQSLKWS 271

Query: 216 HLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQF 269
            +         K  K G+   +   +    LL          +  F  +      +    
Sbjct: 272 DIDLKAGRIIFKDTKNGSDYHMPTSNILQALLEERWRMSSGKQWVFPSDLQASDDHIKDL 331

Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW----KTVDQAETYTKG 325
           S  +KA   +A +  + H +R+   T++     +   L           + D    Y + 
Sbjct: 332 SGSYKAIGNQANLYITPHDLRRTFGTVANSLNISYPVLKRLLNHREAKSSDDVTLQYVQV 391

Query: 326 ADRI-RLGIKNSRRI 339
           + R  R  + +    
Sbjct: 392 SQRQLRDALNSIESF 406


>gi|288551749|gb|ADC53346.1| transposase B [Staphylococcus aureus]
 gi|288551789|gb|ADC53385.1| transposase B [Staphylococcus aureus]
 gi|329315329|gb|AEB89742.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 630

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 33/290 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGV-- 123
            K L+  Y K       + +          +                ++T   I + +  
Sbjct: 218 FKQLVKRYCK-LRLNMDSFSYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSE 276

Query: 124 -ESRKHTPSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  PS+    ++ +  LF     +  + V     +  E   +       +  E + 
Sbjct: 277 LNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDEFVL 336

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +  +   +     +A   ++    G+R S+ C      L      +        K     
Sbjct: 337 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEH 396

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
            V +    + L+ +            E  F   D   +    F       A +  +    
Sbjct: 397 IVPISKEVVLLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 456

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  AH  R    T   + G   H +    G ++ +    Y    D 
Sbjct: 457 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDE 506


>gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2]
 gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2]
 gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2]
          Length = 395

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 86/306 (28%), Gaps = 26/306 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109
            L G   +        +  +T          +     ++ N+   +            D 
Sbjct: 105 LLAGEAERERLRVRSLEINST---------STYRQSKISQNNLREYLLTLK-----MKDI 150

Query: 110 DYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +  IT +     +  ++++++         T +  L   AV QE +  NP   V+  K+
Sbjct: 151 AFTDITEEFGEGYKLFLKAKEYKSGHINHCFTWLNRLIYIAVDQEILRFNPIADVKYEKK 210

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
           +   ++  ++ +++         +     R AF F  ++ L   D      +H+      
Sbjct: 211 EPPKLQHISRNELKLIMEKPMPNTFQELIRRAFIFSAFTALAYVDLKGLYPRHIGRTAEG 270

Query: 224 IKTQKTGTIITVELPDGFMK--LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
               +     T       +      +  +              N  Q           AG
Sbjct: 271 KPFIRIHRKKTQVEAYVPLHPVAEQILSLYNTEDDTKPVFPLPNRDQIWYCITEIGFLAG 330

Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339
           V    S H  R    T+    G     +    G   +   + Y K  D      ++  ++
Sbjct: 331 VKGNMSYHQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMK--ISEDMDKL 388

Query: 340 SSVVDS 345
                +
Sbjct: 389 IERRKA 394


>gi|254977275|ref|ZP_05273747.1| integrase [Clostridium difficile QCD-66c26]
 gi|255094604|ref|ZP_05324082.1| integrase [Clostridium difficile CIP 107932]
 gi|255316360|ref|ZP_05357943.1| integrase [Clostridium difficile QCD-76w55]
 gi|255519019|ref|ZP_05386695.1| integrase [Clostridium difficile QCD-97b34]
 gi|255652201|ref|ZP_05399103.1| integrase [Clostridium difficile QCD-37x79]
 gi|260685158|ref|YP_003216443.1| integrase [Clostridium difficile CD196]
 gi|260688816|ref|YP_003219950.1| integrase [Clostridium difficile R20291]
 gi|306521924|ref|ZP_07408271.1| integrase [Clostridium difficile QCD-32g58]
 gi|260211321|emb|CBA66919.1| integrase [Clostridium difficile CD196]
 gi|260214833|emb|CBE07592.1| integrase [Clostridium difficile R20291]
          Length = 393

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/378 (11%), Positives = 98/378 (25%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K     GK  + +         +P           +S        ++ ++      
Sbjct: 22  RYVYKYTDIFGKPQFVYSWK-----LVPTDKTPAGKRDDISLREKEKQIKKDLDDGIDTV 76

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSG-- 122
               T+  L  +  K+    ++  N+ +  +   + +     G      +     +    
Sbjct: 77  GGKMTVCQLYEK--KNNQRKNIKRNTELGRQYLVNALENDPLGMRAIDTVKQSDAKEWAI 134

Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDM 179
            +  + ++  +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 135 RMNGKGYSYKTIDNYKRSLKASFYMAIQDDCIRKNPFNSKLSDVLEDDTEAKVILTPEQE 194

Query: 180 QQ---FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++   F    +  S+ R     LL +GLR S+ C         N       +        
Sbjct: 195 EKLLAFMETDNVYSKYRDEVILLLETGLRISELCGLTTHIDMLNRVINIDHQLLRDTEVG 254

Query: 232 -----------IITVELPDGFMKLLA----------------MTPIGKETFFINNDKQKM 264
                         + L +   + L                  +                
Sbjct: 255 YYISKAKTKNGKRELPLTERAYQALKRILKNRGKAQPLVVGGYSNFLFLNREGLPKVAGN 314

Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
             +      K             + H  R    T  A+ G   + L    G   +     
Sbjct: 315 YESMVRGLIKKYNKTHKDKLPNITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLG 374

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 375 YYAHGTFQSAKAELERLA 392


>gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296
             +  +     +  +       +  ++        +    KAG+ K    H  R   AT 
Sbjct: 74  WAWQWVFPSRSVSVDPREGVQRRHHLDPNTIDKALRVAVAKAGIAKRVSSHTFRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
               G     +    G K V     YT   
Sbjct: 134 LLQRGQDIRTIQDLLGHKDVSTTMIYTHVL 163


>gi|307292824|ref|ZP_07572670.1| integrase family protein [Sphingobium chlorophenolicum L-1]
 gi|306880890|gb|EFN12106.1| integrase family protein [Sphingobium chlorophenolicum L-1]
          Length = 400

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 87/320 (27%), Gaps = 42/320 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y     G+R    +P                 P  +          T     +++ +   
Sbjct: 71  YLEIKVGKRASWTWPELIEERDRLQKLADHGEPLEDVQAP------TFAAHAADWLE--- 121

Query: 84  WGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFL 137
                 ++  SF     +    ++   G      IT   +   + +++ T  P +  + L
Sbjct: 122 ---RKKSTLKSFGVTQGNVNRSLLPAFGKKALDAITVGDVNKWISAKRATLKPGTVQREL 178

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------- 189
            ++  +   AV+   +  NP    +  K  ++  + +   +  +      E         
Sbjct: 179 NTLNAILNDAVKCSLIERNPAKHADPIKGASDPRQRFITVEEYKTILATCERIEREQEEK 238

Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITV 235
                       R    +   SG+R ++        ++              K G    V
Sbjct: 239 SEQTPHRIRGWLRHFVAWAYNSGMRRAEILALTFDDVREIDEGHTAVAVLHTKNGKSRLV 298

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294
                   +L            N     ++ T  +   +A     G+ +   H +R+  A
Sbjct: 299 SCTPEMKVILDALRGLTRVEGDNRLF-PLSMTTLTRNLRALWKATGLKDVRLHDLRRSHA 357

Query: 295 TISADAGATAHELMATYGWK 314
           TI  D G     +    G  
Sbjct: 358 TILVDKGVDIRTVAGRLGHS 377


>gi|221214184|ref|ZP_03587156.1| shufflon-specific recombinase [Burkholderia multivorans CGD1]
 gi|221165839|gb|EED98313.1| shufflon-specific recombinase [Burkholderia multivorans CGD1]
          Length = 363

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 101/351 (28%), Gaps = 45/351 (12%)

Query: 16  TRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           TR G + +  R +  G  +++   +      A+   +     +  +++    + TTL   
Sbjct: 5   TRRGDLQWQARVRRKGYAVQIKTFNTRAEAEAWARQVESEIDRGVFVSRTEAESTTLCEA 64

Query: 75  ISEYRKS----AHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           +  Y +         +  V+   ++ +     + +      D  K+    +R    +   
Sbjct: 65  LDRYEREIVSLKKGKAQEVSLLKTWRATLIAQRSMASVRSSDIAKLRDDWLRQTNPAL-- 122

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
            P+S ++ L  +  +F  A ++  +        L  + P       R    E   +    
Sbjct: 123 KPASVLRRLAILSHVFSIARKEWGMESLSNPLELVRKPPANNARTRRVRETEGDSRDDRR 182

Query: 186 WSEGSQPRL-----------AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTI 232
             +G   R+                + + +R  +      +++        +   K G+ 
Sbjct: 183 APDGELKRVVSASSSDVLPTIISLAVETAMRRGEIVDLRWEYVDLKRHVAHLPHTKNGSS 242

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------- 281
             V L    ++ L            +     +     +  F+    +A            
Sbjct: 243 RDVPLSPRAVEALKEWRKVVGKNPGDGRVFSIRGDAVTRAFERAVDRARKTYEQECRDAG 302

Query: 282 --------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
                   ++   H +R  + +  A      HEL    G +       Y  
Sbjct: 303 RTPDAKYLIDLRFHDLRHEATSRLASI-FPMHELAKITGHRDPRMLMRYYH 352


>gi|254360492|ref|ZP_04976641.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
 gi|153091032|gb|EDN73037.1| possible integrase/recombinase [Mannheimia haemolytica PHL213]
          Length = 346

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 99/330 (30%), Gaps = 27/330 (8%)

Query: 11  VTKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
             + +  +G I   Y++    G+   L        + A          K  + NS +   
Sbjct: 18  CRRRKRANGSIVEYYFYVLADGKERSLGTNKHEAILEA---------AKLNFENSRKSPI 68

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126
                +   Y         A N+R S       + +  G+      KI  KHI   ++ R
Sbjct: 69  VLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHISQYLQWR 128

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           K TP+ A   +     +  W + +E+         +  K+     R    ED    K + 
Sbjct: 129 KDTPAVANIEVGLFNTI--WNMAREWGYTALPSPSQGVKKFPTKYREVYVEDYILDKIYE 186

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
               +     E     G R  D C     H+ + I  I  QKTG  +  E+     ++L 
Sbjct: 187 FADERMADIIETAYLLGQRPIDICNIHRSHIYDGILHITQQKTGKKVRFEISGRLKEILD 246

Query: 247 MT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSAT 295
                  +  F N   +K+        FK    +A                  +R  +AT
Sbjct: 247 KRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRDMRAKAAT 306

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325
             +       +     G  +      Y + 
Sbjct: 307 DISLMTTD-EQAQKQLGHTSKRMTHHYIRK 335


>gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R]
          Length = 391

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 35/260 (13%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129
              Y +       +  +   +             + G    + ++ ++HIR+ + SR+ +
Sbjct: 88  FRRYLEMEE--GRSPRTAKEYLMDAGLFARWFRERHGRPPRWEEVGSQHIRAFLASREVS 145

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           P  A + L S+R LF++    E +    +P   V+RPK         T  ++ +      
Sbjct: 146 PYRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLLQAAY 205

Query: 188 EGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237
           +   PR+A            +GLR S++       L              K G    V L
Sbjct: 206 QNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKERVVVL 265

Query: 238 PDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283
                + L               P         N  +  +A       K  A +AG+   
Sbjct: 266 SPTAQRALHQWLKHRNLEGHPTSPYIWSHTSGPNRGKPFSARAVEAMVKRVAKRAGLKDW 325

Query: 284 --KSAHGVRKFSATISADAG 301
              + H +R   A+   +AG
Sbjct: 326 RRITPHKLRHSYASALVEAG 345


>gi|325000066|ref|ZP_08121178.1| phage integrase [Pseudonocardia sp. P1]
          Length = 347

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 73/261 (27%), Gaps = 11/261 (4%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131
           + ++  Y  +        N+    E    +  R        + +   +         +  
Sbjct: 38  EEILRRYLSAVRLR-WRPNTVRVREIQLGRFARWLYPTPLTEASEDQVVDFHAQLDLSAE 96

Query: 132 SAIQFLTSMRVLFKW---AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188
               +++++R  + W     R +  + +P   +ERP+      RP    D Q   +    
Sbjct: 97  GVNGYVSALRGFYGWLSVRARPKVRSDDPTELLERPRVPRRAPRPVLARDYQLALACAMS 156

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKL 244
                     +  SGLRC +        ++           T K G + TV      M +
Sbjct: 157 DPVMYAWLGLMGCSGLRCCEVAWLRSSDVEERADGTGLLHVTGKGGHVRTVPAGTDLMTV 216

Query: 245 LAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301
           L            F    D       + S          GV  +AH +R    T   +  
Sbjct: 217 LRPFLEARPTGHVFARPLDGGPHTPDRVSQLVAKFLRGIGVQATAHQLRHRFGTDYHEID 276

Query: 302 ATAHELMATYGWKTVDQAETY 322
                     G  +V+    Y
Sbjct: 277 QDVFRQAELMGHASVEMTRRY 297


>gi|160890395|ref|ZP_02071398.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
 gi|156860127|gb|EDO53558.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492]
          Length = 382

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 92/301 (30%), Gaps = 41/301 (13%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128
           K LI +Y +    G+     R+ ++   +          D  + +I    +    +  + 
Sbjct: 89  KELIEQYTREDKCGN-----RLIYKGSFNSLKVFTNGKLDIPFNEIDIAWLNKYEKWLRS 143

Query: 129 TP---SSAIQFLTSMRVLFK------------WAVRQEYVAINPCLSVERPKRKTEGIRP 173
                ++      ++R  +             +      +      + +R   KT+ ++ 
Sbjct: 144 KGNRETTISLLFRTLRSAYNKAIKAKCARKSDYPFDDYKINKFDTTTQKRAIAKTDVLKF 203

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T+      + +        +     L  G+  +D      +++QN       QKT   I
Sbjct: 204 TTEVQPIGKQQYMELSKDIFVFS--YLCGGINFTDIANLTNENIQNGRLHYIRQKTKKPI 261

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-------------FKAKATKA 280
            + +P   M+++       + +       K++ T                   K  A + 
Sbjct: 262 KIGIPQEAMQIIEKYSKESKGYLFPILDSKIHKTALQKQNRIHKILGKVNKNLKLLAAQL 321

Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           GV    + +  R   A++   +G     +    G   +   + Y    D  ++  +  R 
Sbjct: 322 GVEANLTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQV-DEAMRN 380

Query: 339 I 339
           +
Sbjct: 381 L 381


>gi|27468531|ref|NP_765168.1| transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
 gi|27316078|gb|AAO05212.1|AE016749_158 transposition regulatory protein tnpA [Staphylococcus epidermidis
           ATCC 12228]
          Length = 383

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/322 (8%), Positives = 82/322 (25%), Gaps = 70/322 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRK------- 127
            Y K       ++N++ ++                  ++++  +    +   K       
Sbjct: 42  RYLKYLDSVKKSLNTKKTYAYALKNFFVYLESKKICYKEVSFDNFVDFIRWMKTPFEYEN 101

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
                      +P +    +T +   + +  R + + +N    +    + ++  + +   
Sbjct: 102 VLSYHRKEKSISPKTINLTMTVVSNFYDYLYRSKKLDVNFYDFMHMESKYSKKYKSFMHH 161

Query: 178 DMQQFKSFWSE--------------------------GSQPRLAFEFLLYSGLRCSDSCR 211
             + +++  +                             + +   + L  +GLR  +   
Sbjct: 162 INKDYRTLKNILKVKEPKKKIEVLTNAEVKKLLEEANNIRDKFLIQLLYETGLRIGEVLS 221

Query: 212 AGVQHLQNNIFS--------------------IKTQKTGTIITVELPDGFMKLLA----M 247
             +  ++ +                        +       +     D   +++      
Sbjct: 222 LRIDDIKFDFRKGHQIVLKNRFNDNGTYLKTGERKIFISQSLIDLYDDYVYEIIDELSIC 281

Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307
           +          N  + MN +     FK    K  +N   H  R   AT+  +      ++
Sbjct: 282 SDYLFVKIKGRNVGEAMNYSDIYSLFKRLKHKTSINVHPHLFRHTHATVFYNETKDIKQV 341

Query: 308 MATYGWKTVDQA-ETYTKGADR 328
               G   +      Y    + 
Sbjct: 342 QERLGHSNIQTTINLYVHPTEE 363


>gi|315163811|gb|EFU07828.1| site-specific recombinase, phage integrase family [Enterococcus
           faecalis TX1302]
          Length = 392

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 107/391 (27%), Gaps = 70/391 (17%)

Query: 1   MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
           M    R    +       G++ +YF+     R                  L  S  KR+ 
Sbjct: 1   METKDRFKKHI----GASGEVTWYFQAFRTTR---RGFKTKREAQLEFLELKKSRQKRKK 53

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
             +  +K + +      Y KS +   ++  +          + R  G+     +T   + 
Sbjct: 54  FVNSNEKFSLVADQWFMYYKSLNEQKIS--TYDKRSELVGTLNRWLGEKKLIDLTPDFLE 111

Query: 121 SGVESRKHTP------SSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTE- 169
             + S K           A   L S+R     +FK+ V++  ++ NP  +V  PK +   
Sbjct: 112 ELMFSLKERGIDGESQGYAKNTLYSLRQTLNMIFKYCVKKGILSDNPLTNVPMPKYQKSV 171

Query: 170 ----------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--LYSGLRCSDSCRAGVQHL 217
                       +  T ++++   ++     +  LA  F    Y+G R S++     + +
Sbjct: 172 TDLKRSLNSLDEKYLTIDELRMLLNYSILHEELPLATLFYVLFYTGCRISEALALQKEDI 231

Query: 218 QNNIFSIKTQKTGT-------------------IITVELPDGFMKLLA------------ 246
                 I   K  +                      V       KLL             
Sbjct: 232 DFENNEILFYKQTSVKGKQIDFKIETTKSVSSARRVVVTDLVMEKLLQLITVLDNLNSQV 291

Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADA 300
                                      +   K    + G+ K  H    R   A++ A  
Sbjct: 292 PFRVKENYLFVYLSPFKRGIPYRREYVNDHIKRCVERCGITKPFHTHLTRHTMASLVAQH 351

Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331
             +   L    G      +E Y       ++
Sbjct: 352 -CSWEVLKGRLGHADKSTSEIYRHLTSEEKM 381


>gi|260856764|ref|YP_003230655.1| putative integrase [Escherichia coli O26:H11 str. 11368]
 gi|257755413|dbj|BAI26915.1| putative integrase [Escherichia coli O26:H11 str. 11368]
          Length = 391

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 74/288 (25%), Gaps = 30/288 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           KK   +K  + EY K     +L+ ++   +E     +          ++T   +++ + S
Sbjct: 89  KKTKNIKSYLDEYLKICINRNLSPSTIGGYEKCLSALSE-LHKLHVTELTPAILKNWIAS 147

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
           RK    +    L+ +R     AV         V +                         
Sbjct: 148 RKTKLKTIRNNLSFLRSAIDEAVTDGLLTINPVTLVSASRYHVIDSSPSADDYEVDPFTP 207

Query: 181 QFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------- 227
                  +  + R     F F   +GLR S+ C      L     +   Q          
Sbjct: 208 AETLAIYQSCRYREWENLFRFAFNTGLRSSELCALRWADLDTIANTAHVQAASVVGVLKG 267

Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKA-----T 278
                    VEL    +  L                          +   + KA      
Sbjct: 268 TKTKAGTRKVELNSEALAALQAQKQYTFMKSEFIFSDPKTGEPWTNADAIRKKAWVPTLK 327

Query: 279 KAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTK 324
           KAGV     +  R   AT     G     L    G K  +     Y K
Sbjct: 328 KAGVRYRNPYQTRHTFATRHISQGVNLFWLAGQMGHKGPEMLFRNYGK 375


>gi|86739852|ref|YP_480252.1| phage integrase [Frankia sp. CcI3]
 gi|86566714|gb|ABD10523.1| phage integrase [Frankia sp. CcI3]
          Length = 422

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/389 (11%), Positives = 102/389 (26%), Gaps = 69/389 (17%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y     G   R P   +S  I      LT      +          T++  ++ +     
Sbjct: 39  YVLMPDGTTKRRPVYGKSEEI--VRGKLTELQANSDQGIPADATGWTVERFLTVWLAQTV 96

Query: 84  WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES----------------- 125
             +   N+ +++E      +I   G     +++   +R  +                   
Sbjct: 97  KPNRQPNTYVTYEKAVRLYLIPGLGKKRLNRLSGADVRQFIRRTETTCRCCEMGRDKARP 156

Query: 126 --------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
                         R+ +          +R   + AVR+E +  N    V+    +    
Sbjct: 157 EQERRCCAVGQCCNRRPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYNVD 216

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R  T E   +     + G++        L+ G+R  +        +  +  ++  + T  
Sbjct: 217 RGLTVEQAHRLLD-EAAGNRLYALLVLALFLGMRRGELLGLQWSDIDTDRETLTIRHTLQ 275

Query: 232 II------------------------------TVELPDGFMKLLAMTPIGKETFFINNDK 261
            +                                +L            +  +  F     
Sbjct: 276 RVGGELRLLPPKTEDSERTLSLLGLVADALTEHRKLQQAERDAAGDRWVTTDHVFTTKIG 335

Query: 262 QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
             +       ++      AG++    HG+R    T+  D G   H +    G   ++   
Sbjct: 336 TAIEPDNLRRFWMPLRQAAGLDGVVFHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTM 395

Query: 321 -TYTKGADRIRLGIKNSRRISSVVDSDDP 348
             Y   +   +   +   R+   +    P
Sbjct: 396 TIYAHASMGEKR--RALGRLDGHLTGPRP 422


>gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
 gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter
           piscolens W5455]
          Length = 336

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 94/331 (28%), Gaps = 20/331 (6%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63
           +  LP  + K   R     +       RR      +  T   A    L    PK     +
Sbjct: 2   NRDLPKGIRKVGNR---YKWEIMYNGVRR----AGYTVTLEEAIQ--LRKDIPKMLSARA 52

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSG 122
               P  L   I+    +  W      S   F    + I+R         +IT + I   
Sbjct: 53  SDTSPKCLGGAIAHLLAT-DWSEDQCKSHAWFVRNTNLIMRYFNPVMLLSEITAEKIDEY 111

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178
           V   K+    +  +  + L+++  +  W   + Y+A  P +   +            +E 
Sbjct: 112 VLHLKNVERNSGGTINRKLSALSKILSWGAEKGYIAKKPKVPRLKESVGRLRFLSEAEEI 171

Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTII 233
                   +      L+   L+ +G+R  +  +A V+ +  N         +  K     
Sbjct: 172 RVLNYFKDNGYRVEYLSCIVLVDTGIRTGELFKASVKDVDWNAGDHGIIILRDTKNNDTR 231

Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293
           +V L       L               K+    + +    +            H +R   
Sbjct: 232 SVPLTKRAADALKELSGLSPNHEQFVPKEDWLRSAWLKMRETLGYADDKFMVPHILRHTC 291

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324
           A+     GA  + +    G + +     Y  
Sbjct: 292 ASRLVQKGAPLYSVAKWLGHRNLMTTRRYAH 322


>gi|218905481|ref|YP_002453315.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
 gi|218537626|gb|ACK90024.1| prophage LambdaBa02, site-specific recombinase, phage integrase
           family [Bacillus cereus AH820]
          Length = 319

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 77/291 (26%), Gaps = 34/291 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+        + +  ++T K IR+     +  
Sbjct: 21  LVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHEHFENKNLIELTRKDIRNLSIIFQEM 80

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 81  RMSNARVNGLMSALRSALEFCADDDDYNYEFNVGSRVRGLPQNPIREITFITDDQINWLI 140

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T I         +L  
Sbjct: 141 DELLEQ---EKYMLATYLALSYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYY 197

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------------------- 285
              + K      N + K       +       +  +NKS                     
Sbjct: 198 NPRVQKCIRLYINQRGKDTIPDLFVRVYKNGERKLLNKSVFNYWCKIFAKMLYEKEGKEY 257

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333
               H  R          G    +L +      +   ++Y K      +  
Sbjct: 258 KINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIAD 308


>gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella
           blandensis MED217]
          Length = 414

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 95/285 (33%), Gaps = 32/285 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE----SRKHTPSSAI 134
             ++ +S   + +  + + +         D+  R I    I          R    +SA+
Sbjct: 126 KDISASSAQRYWTCHNHVQQFINEEYDEEDYRLRDIDHNFIIKFEHFLKTKRNCNHNSAL 185

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---QQFKSFWSEGSQ 191
           +++ + + + + A+  ++++ +P ++ +  K +       T+E++    + +  +     
Sbjct: 186 KYVNNFKKIVRIALANKWISHDPFINYK-VKFEPVEREFLTQEEIDALWEKELHFERLIL 244

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLLAM 247
            R  F F  Y+GL  SD  +     +   I   K  +         +        + +  
Sbjct: 245 VRDMFVFSCYTGLAYSDVEKLSKSDITIGIDGSKWIRIHRTKTGSRSSIPLLPVAEQILA 304

Query: 248 TPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGV--NKSAHGVRKFSATIS-ADAGAT 303
                     +     + + Q S  F K  A    +    + H  R   AT      G  
Sbjct: 305 RYENHPQVEESERVIPVLSNQKSNAFLKEIAIMCDISKPLTTHLARHTFATTVTLTNGVP 364

Query: 304 AHELMATYGWKTVDQAETYTKGADRI----------RLGIKNSRR 338
              +    G +++   + Y K  DR           +L  + S++
Sbjct: 365 IETVSRMLGHQSLRTTQHYAKIVDRKISDDMNILKEKLAAQKSKK 409


>gi|331084818|ref|ZP_08333906.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410912|gb|EGG90334.1| transposase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 396

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 100/378 (26%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K    +GK  + +         +P           +S        ++ +N      
Sbjct: 25  RYVYKYTDIYGKPQFIYSWK-----LVPTDKTPAGKRDDISLREKEAQIKKDLNDGIDTA 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
               T+  L  +  K++   ++   +    +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYDK--KNSQRKNIKRATEKGRQYLMNALKNDPLGMRAIDTVKQSDAKEWAI 137

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                     +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 138 RMSEKGYAYKTIDNYKRSLKASFYMAIQDDCIRKNPFEFTLSDVLENDTEQKVILTPEQE 197

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++  +F  +    S+       LL +GLR S+ C         N       +        
Sbjct: 198 ERLLAFMEKDKVYSKYYDEVVLLLETGLRISEFCGLTTHIDMQNKILNIDHQLLKDSEIG 257

Query: 232 ---------------IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQ 268
                           +T        ++L                  F+N +     A  
Sbjct: 258 YYIETPKTKNGKRELPLTERAYQAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGN 317

Query: 269 FSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +    +    K          N + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YEGMVRGLIKKYNKYHTDKLPNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|325956124|ref|YP_004286734.1| integrase [Lactobacillus acidophilus 30SC]
 gi|325332689|gb|ADZ06597.1| integrase [Lactobacillus acidophilus 30SC]
          Length = 290

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 37/267 (13%)

Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAI-NP 157
           + I++  G +   ++T    +   +      P +    +     L  +AVR +Y+     
Sbjct: 10  NHILKDLGSYYIERLTPFKCQRVAQKWALELPKTFNTLIIYSNKLLDYAVRFDYIRKNPM 69

Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216
            +  ++     E    +TK+++  F     +E  +    F  L YSG+R  ++       
Sbjct: 70  IIKPKKQAEHKEFTDFYTKQELNAFLKASKNENIKIYTFFRLLAYSGMRKGEALALKWSD 129

Query: 217 LQ-----------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           +                  + +    T KT     + +    M+LL      +  + +  
Sbjct: 130 IDFTSNTISINKTVSIGNKHRVVVNNTTKTKRNRAISMDARTMQLLKEWRFQQRRYLLQL 189

Query: 260 DKQKM---------------NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303
                                    ++W K    K G+ +   HG R   A++  DAG  
Sbjct: 190 GFNPFDKEQVVFQNFDNEVVRPNLVAVWNKRICDKNGLRRIKTHGFRHTHASLLFDAGVP 249

Query: 304 AHELMATYGWKTVDQAE-TYTKGADRI 329
             ++    G  ++      YT      
Sbjct: 250 MEDVKQRLGHASIQTTMDIYTHVTKEK 276


>gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269]
 gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269]
          Length = 409

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 74/265 (27%), Gaps = 23/265 (8%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFD--------------YRKITTKHIRSGVESRKHTPS 131
            +   +  S+ +    +     +                   +    +     S+ +   
Sbjct: 128 EIKATTLKSYYTTRKHLQAFISEKYHTTDILFGQLEEDFLECLQHYSVGKLGHSQGYYRK 187

Query: 132 SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
            A+      R+ ++     ++  A       E  + +        K     F+ +  E  
Sbjct: 188 MALTVKKVCRLAYREGLTERQLFAHVEIERGENKQPRALDRASLDKLQALTFEPYEVELE 247

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
             R  F F  ++G+   D      +HL  +       K             +KLL     
Sbjct: 248 TARNLFLFSCFTGVAYCDMVALNREHLFTDDEGGLWLKF--RRQKTENLCRVKLLPEAVH 305

Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS-ADAGATA 304
                ++         +  + + +  KA   +AG+    SAH  R   AT+   + G   
Sbjct: 306 LIAQYQSDERTTLFAPIPYSVYLVQLKALQLRAGISIPLSAHVGRHTFATLITLERGVPI 365

Query: 305 HELMATYGWKTVDQAETYTKGADRI 329
             +    G + +   E Y     + 
Sbjct: 366 ETVSRMLGHRNIQTTERYAHVTPKK 390


>gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
 gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme
           DSM 15981]
          Length = 285

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 81/254 (31%), Gaps = 11/254 (4%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
           +Y++  +    +  +  S+               Y K T    +  + SR + P++    
Sbjct: 17  QYQQHLYEQEKSHPTIQSYLRSLKAFAVFLDGRSYTKETAIRWKETLTSR-YAPNTVNAM 75

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           L ++    +++       + P         + E     ++       +  S   +  L  
Sbjct: 76  LAAINGFAEFSG-CPQFKVKPLKIQRELFIRPERELTRSEYGRLVNAADRSGNRRLSLVL 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255
           + +  +G+R S+      + ++     +  +      TV LP+   +L+ +    ++   
Sbjct: 135 QTICATGIRVSELRFITAEAVEKGYAQVDCKG--KRRTVFLPEKLRRLIGIYMKKQKKTA 192

Query: 256 ---FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMA 309
              FI    + ++ +      KA   +AGV       H +R   A            L  
Sbjct: 193 GAVFITRSGRPLDRSNIWRDMKALCERAGVEPGKVFPHNLRHLFARTYYMLEKDLSRLAD 252

Query: 310 TYGWKTVDQAETYT 323
             G   V     YT
Sbjct: 253 ILGHTNVSTTRIYT 266


>gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium]
          Length = 158

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 68  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRTVEQAGITKPATPHTLRHSFA 127

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325
           T    +G     +    G   V     YT  
Sbjct: 128 TALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158


>gi|114765612|ref|ZP_01444713.1| Prophage integrase [Pelagibaca bermudensis HTCC2601]
 gi|114542061|gb|EAU45094.1| Prophage integrase [Roseovarius sp. HTCC2601]
          Length = 361

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 98/329 (29%), Gaps = 30/329 (9%)

Query: 14  ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73
           ++ R G  +YY R                   A    +       +     +    T   
Sbjct: 4   KKFRRGSGVYYIRGTVAGCSIYESTGTRDAARADAIRIRREAELLDRHAYGKAATLTFAE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH--TP 130
               Y K+                +  +I+   G D     I    I     +       
Sbjct: 64  AALAYMKAGGET-----------RFLAKILEHFGPDTLLSDIDNAAIVEAEAALYPEAAA 112

Query: 131 SSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           S+  + L   +  +   A  +           +         R  T E+ +Q     +EG
Sbjct: 113 STVNRQLIVPISAVVTMAADEGLTEPRRFKRRKG---DRVRTRWLTPEEAEQLIEAAAEG 169

Query: 190 SQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246
           +   L A   +L +GLR S++    + H         I   K G    V LP   + L+ 
Sbjct: 170 APHILPAIGLMLGAGLRSSEALGVDMAHFYPATGEAWIPKTKNGEPRMVRLPSRALDLIR 229

Query: 247 MTPIGKETFFINNDKQKMNAT------QFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297
             P+        + K +          Q S  F    T+AG+++   + H +R   AT  
Sbjct: 230 SRPLPDAGAICRSPKGRAYVQRENGGGQISTAFANAVTRAGLDRNEVTPHVLRHTWATWY 289

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326
                    L+   GWK  D A+ Y K A
Sbjct: 290 YAQTHDFGGLLDIGGWKKSDMAQRYRKIA 318


>gi|87309792|ref|ZP_01091926.1| phage-related integrase [Blastopirellula marina DSM 3645]
 gi|87287556|gb|EAQ79456.1| phage-related integrase [Blastopirellula marina DSM 3645]
          Length = 292

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 12/295 (4%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK 117
                 + + TTL  L   Y       +    +    + Y    I   G      ++   
Sbjct: 2   ADREQVKDELTTLYELSQVYLDWCEA-NRKPATYRLHKRYLKSFIDSVGRRMRPSQLRVH 60

Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           H+    E      ++    +  ++ +  WAV QEY+  NP   +   K+     R     
Sbjct: 61  HVSKWHEGLAVGTTTQNDVVGIVQRMLNWAVEQEYLYRNPIKRM---KKPKRKRRDVFYT 117

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---TGTIIT 234
             Q      +         +FL  +G R  ++     +HL +++    T +         
Sbjct: 118 PEQWKLIRENVPGPLGELLDFLYLTGCRPLEARTIEARHLHDDLVIFPTDESKGEHEARV 177

Query: 235 VELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292
           + L      +L            F N                  +   G    A+G R  
Sbjct: 178 IYLVPEAKAILRRLAKDRPSGILFRNTRGLPWTKNAIICQLTRVSKTVGFRVIAYGARHS 237

Query: 293 SATISA-DAGATAHELMATYGWKTVDQAET-YTKGADRIRLGIKNSRRISSVVDS 345
            AT +    G     +    G K        Y+  A       + + +      +
Sbjct: 238 FATEALTKGGVDPISVAHLMGHKDPTMVSRVYSHIARNPEFLRQQALKAVGKKGA 292


>gi|325661577|ref|ZP_08150201.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472104|gb|EGC75318.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 354

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 100/327 (30%), Gaps = 59/327 (18%)

Query: 69  TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------------RKSGDFDYRK 113
           TTL     +Y ++    + +  +RIS+                        +    D  +
Sbjct: 25  TTLPAFAKDYFRAMEPTT-SAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQ 83

Query: 114 ITTKHIRSGVESRKHTPSSAI-----------QFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           +++  I   +E  K   SS             + ++++R  + +  +++ +  NP L V+
Sbjct: 84  LSSVDIEEYLEYLKVYESSENKQIINSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVD 143

Query: 163 RPKRKTEGIRPW----------------TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
            PK   + I                   ++   Q+   +     +       LL +G+R 
Sbjct: 144 MPKLHEKAIIRLDTDEVAILLDYIETCGSQLTGQKKVYYEKTKYRDLAIITLLLGTGIRV 203

Query: 207 SDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMT-----------PIGKET 254
           S+     +  +         T+K G  + V       K L              P  +  
Sbjct: 204 SECVGLDINDVDFKNNGVKVTRKGGNEMVVYFGREVEKALRDYLELTRKNITPLPDHENA 263

Query: 255 FFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYG 312
            F++  +++M         K  A +       + H +R    T         + +    G
Sbjct: 264 LFLSTQRKRMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLG 323

Query: 313 WKTVDQA-ETYTKGAD-RIRLGIKNSR 337
            K V+   + Y    + R R      +
Sbjct: 324 HKDVNTTKKHYAAIDESRRRQAASAVK 350


>gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002]
 gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002]
          Length = 342

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 83/302 (27%), Gaps = 46/302 (15%)

Query: 74  LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-----ESRK 127
           L  E+         LA  S  ++     +        D  ++    + +       +  K
Sbjct: 4   LFEEFLLFKADNDGLADRSVRAYRDILVRYEAWLDGRDPLEVNGDQLLAFCGPYLHKQLK 63

Query: 128 HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             P S   ++  +  L+++    +     +P  +V  P++  +  R  T +  ++     
Sbjct: 64  LAPVSRTPYVACIHELYRYLSAVRGLTGRDPSQAVPYPRKPGKLPRVATLDTAERLMWAP 123

Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------IKTQKTGTIITV 235
                EG +       LL  GLR S        +L   +            +K G    +
Sbjct: 124 DFNTFEGVRDAAMLALLLGCGLRVSGLAALNEGNLTTQVVDGEPRLALKPIEKGGKERLI 183

Query: 236 ELPDGFMKLLAMTPIG-------------------------KETFFINNDKQKMNATQFS 270
            +P     LL +                                     ++++ +     
Sbjct: 184 PVPREADLLLRVYMEHPDLEGIDRSTPSGDRVLFITTRNRRCPAHEYYGERRRFSTRGVF 243

Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
              +     AG+     + H +R    T  A+      E     G K       YT  A 
Sbjct: 244 AMIQRHGKAAGIPEEQLNPHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAF 303

Query: 328 RI 329
           R 
Sbjct: 304 RK 305


>gi|320197687|gb|EFW72298.1| site-specific recombinase, phage integrase family [Escherichia coli
           WV_060327]
          Length = 455

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 98/350 (28%), Gaps = 25/350 (7%)

Query: 10  FVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-K 67
           FV   R   G+    +   G    + L    E         A       +  I +  + K
Sbjct: 88  FVFFYRLAGGRAAPVWLTLGKYPDMSLKQAREKRDECRAWLADKRDPRIQIKIQAEERLK 147

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126
           P T++  ++ + ++  +  +   +   +   +   I    G                +  
Sbjct: 148 PVTVEDALNYWYEN--YCKVRRKTHAVTLGRFRKHIFPYIGHLPVNDTHLYEWLDCFDRI 205

Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQF 182
           K + P  A    +  ++  ++   ++Y   +    +             R   + ++ Q 
Sbjct: 206 KSNAPVMAAYVFSDTKLALRFCRVRQYATCDALKDLRMSDVGQIAGKRDRVLDEAELGQL 265

Query: 183 KSFWSEGSQPRLAFEFL-----LYS--GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
                     +L  E+      L +  G R S++  +         +     K  +   V
Sbjct: 266 WKAIFVEPDLKLMSEYTRKMFVLCTVFGCRMSEARLSEWSEWDLESWVWTVPKDHSKTGV 325

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN--KSAHGVR 290
           E+     ++L            +      +       S        + G     S H +R
Sbjct: 326 EIVRPVPEILRQWVTDVHEETKHTGYVLGSLRIRESVSKIGGKIGKRLGHEKQWSLHDLR 385

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340
           +  +T  +D G   + +    G      A  Y    +R +   K    + 
Sbjct: 386 RTLSTHLSDLGVEFYVVEQLLGHALPGVAGVY----NRSKFMAKKLDALE 431


>gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
 gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase
           family [Slackia exigua ATCC 700122]
          Length = 452

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 110/385 (28%), Gaps = 68/385 (17%)

Query: 18  HGKIIYYFRK------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            GKI Y  R         GR IR P              L     + E       +  T+
Sbjct: 14  KGKI-YRIRHHLGRDPKTGRYIRSPKKTVYGTKADARRELETYRHELE-SEVGNFEEYTV 71

Query: 72  KWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----R 126
                 + +     G  +  +    +    +I    G      +T K I +  +     R
Sbjct: 72  GAYARLWHERRVDSGGYSPLTLKDDDLQVRKIEALWGGTLLENLTAKKISAAYDRLLANR 131

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           + + ++  +   ++ ++   AV  E V  NPC  V+ P+ K +  +  + E   +     
Sbjct: 132 EASRNAIHKINGTLSLVMDHAVANELVEANPCNLVKAPRPKPKERKALSDEQALELAMAL 191

Query: 187 SEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------T 231
               Q    +A    L +G+R  +      +++  +   +   +               +
Sbjct: 192 RTEKQTGNTVAVWIALATGMRRGEIIGLVWRNVDFDRRRVYVGQQYAADHTIRDPKSEKS 251

Query: 232 IITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFK--- 274
              + + +G +  LA     +                   N+  Q M+   F+ W +   
Sbjct: 252 HRWLGIDNGTVTFLAEWKARQARDMEVQGLDQSGETPVCTNSVFQFMDPNTFNRWRRQYF 311

Query: 275 ---------------------AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                                     A V  + H +R   AT+   +GA         G 
Sbjct: 312 AEHGLGEFGPSVQYTDSQGRKRWRKGAYVGYNLHELRHTQATLLIGSGADIKTAQQRLGH 371

Query: 314 KTVD-QAETYTK-GADRIRLGIKNS 336
            +     + Y    A   R+     
Sbjct: 372 SSASLTMDIYAHFIAQNDRIAANTI 396


>gi|239631101|ref|ZP_04674132.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239525566|gb|EEQ64567.1| integrase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 384

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 95/370 (25%), Gaps = 46/370 (12%)

Query: 19  GKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76
           GK  Y        G R        +    A   A   ++   +  N   ++   +     
Sbjct: 17  GKWRYRVYYYDNQGIRHAKSKRGYARQAAAKRDAQILASELEQGANMLDREVGFVN-YFE 75

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAI 134
           E+      G  A  +   ++ +   +    G    + IT    +  + S   T +  +  
Sbjct: 76  EWLTRYKRGKHAKVTENRYDYFKAALDDFFGVAKLKDITLDRWQDFINSYGKTHAKDTVR 135

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190
           +    +R + K A+  + +  +    V    + PK               +   + +   
Sbjct: 136 KINAYVRGMVKAAINNQILNRDFTQGVEFVGKAPKDPGLKFLELPFLKKLKDLVYKTANF 195

Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-------- 240
           Q     A    L +G+R S+        +      +   KT      +            
Sbjct: 196 QANTSYAIAVGLGTGMRYSEVVGLTWADVDCKNQQLNIDKTWDYHFGQGLMPTKTPSSVR 255

Query: 241 ---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK------------------ 279
                + L       +         +     F++ F++                      
Sbjct: 256 VIDMPEDLTQLLKKLKKEQTEAFMAQGYRDPFNLVFRSTRHLVPTDAATNKMLKSYQTQI 315

Query: 280 ---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKN 335
              A    + HG+R       A      + +    G K V      Y       +   K 
Sbjct: 316 QVPAHKQITFHGLRHDHVAYLASQNVDIYYISRRLGHKDVSMTLRIYEHMF--KKAEAKQ 373

Query: 336 SRRISSVVDS 345
            ++    +D+
Sbjct: 374 VKKTLKALDN 383


>gi|225628807|ref|ZP_03786841.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225616653|gb|EEH13701.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 418

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 28/337 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 70  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 127

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
            ++  +R      +++ +  K G+    +IT + +R+  ++   +  PS+A+     M +
Sbjct: 128 -MSETTRNMRRGTYERDLKPKFGNRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMML 186

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +F+WA+ +     NP   V          R           M Q+          R A +
Sbjct: 187 VFRWAIERGQKVENPADLVRPSTIAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAK 246

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     ++L +         
Sbjct: 247 LLLLTMVRKSELTNATWSEINFIDALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAG 306

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G        H +R+ ++T+  +AG 
Sbjct: 307 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGY 366

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337
               +      +       Y K    D+ R  +++  
Sbjct: 367 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWA 403


>gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
 gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC
           29176]
          Length = 426

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/402 (12%), Positives = 110/402 (27%), Gaps = 64/402 (15%)

Query: 2   TPSLRLPPFVTKERTRHGKIIYYFRKGHGR--------RIRLPYPHESTFIPAYMSALTG 53
           +    L P   +     GK  Y +                    P       +       
Sbjct: 13  SKRRVLRPG--ESVRADGKYQYKYHIDGKPHFVYSWKLEPTDKLPKGKKPCLSLRELEKQ 70

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYR 112
                + + +      T+  L+  Y K+     +  +++  + +    +     G    R
Sbjct: 71  VNTDLDLLVNIVDGQMTVCELVERYLKTK--TGVRQSTKQGYVTVQRLLAKETFGKKTIR 128

Query: 113 KITTK----HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKR 166
            + T      +    +    + SS       +R  F+ AV  + +  NP           
Sbjct: 129 SVKTSDAKLFLIKLQQEDGKSYSSIHTIRGVLRPAFQMAVDDDILVKNPFGFQLAGVLVN 188

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRA-------GVQH 216
                   +K+ M++F  F  +       +E +    ++G+R S+ C           + 
Sbjct: 189 DAVTREAISKDQMRKFLKFVHDDVVYCKYYEVVYILFHTGMRISEFCGLTLKDIDLENRT 248

Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--------------------- 255
           +  +    +T     II     D   ++L +T    + F                     
Sbjct: 249 VNIDHQLQRTSDMRYIIETTKTDAGTRVLPITEDVAQMFQAIIEDRNAPKVEKSIDGYSG 308

Query: 256 --FINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHE 306
             F +++   + A  +   F     +          N + H  R    +  A +G     
Sbjct: 309 FLFYDDNGMPLVAMHWQHRFNHMVGRYNDIYRVQIPNITPHVCRHTYCSNMAKSGMNPKT 368

Query: 307 LMATYGWKTVDQAE-TYTK-GADRIRLGIKNSRRISSVVDSD 346
           L    G   +      YT  G D      +  +R+     + 
Sbjct: 369 LQYLMGHSDISVTMNVYTHIGFDD---AEEELKRMEEFRKAQ 407


>gi|2618969|gb|AAC48894.1| integrase [Phage 21]
          Length = 356

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 96/345 (27%), Gaps = 47/345 (13%)

Query: 20  KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN----------SPRKKPT 69
           K+ + ++     R       E+        A T    +R                R+   
Sbjct: 1   KVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDI 60

Query: 70  TLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
           T+   + +Y            L  NS               G    + IT   I   +++
Sbjct: 61  TVTEWLDKYNSIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDA 120

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVERPKRKTEGIRPWTKEDM 179
            K       +    +R++     ++   A +      P  + ++P+ +    R    E  
Sbjct: 121 VKAEGH--NRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQ 178

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------- 232
             F S        +      L +G R SD C      + +++  I  +KTG+        
Sbjct: 179 AIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDMLHITQEKTGSKLAIPLNL 238

Query: 233 ---------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
                      V        +       + T    N   +++A   +  FK    K G+ 
Sbjct: 239 KCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIK 298

Query: 284 K------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
                  + H  R  S  +  + G          G K+    + Y
Sbjct: 299 WEQGTAPTFHEQRSLSERLYREQGLDT---QKLLGHKSRKMTDRY 340


>gi|34763136|ref|ZP_00144105.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27887199|gb|EAA24301.1| DNA integration/recombination/invertion protein [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 290

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 23/279 (8%)

Query: 67  KPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSG 122
           +   ++  I ++     +  +   N+ IS     +  +      +     K+    I+  
Sbjct: 3   EKINIEKAIKDFVYYLEFEENKKNNTVISIRKDLNNFLEYLNKKNIITLDKLDELIIKEY 62

Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
           +   K    + S+  + L+S++  +K+ +          + +E  K   + I+    +++
Sbjct: 63  LTELKDFDLSNSTYNRRLSSIKKFYKYLINNNLKEKGKEILIEGKKSDEKKIQYLNSDEI 122

Query: 180 QQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           +  +    E S    + RL FE L  SG+  ++    G  +       I   K      +
Sbjct: 123 KILREEMKEESFNFLRDRLMFELLYSSGMTVAELLSLGELNFNLEKREIYLLKNRISKVL 182

Query: 236 ELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284
                  ++                     F+NN   ++            + KA + K 
Sbjct: 183 YFSQTCKEVYLKFLIAKKEKFKEDNNTNIIFVNNSNMRLTDRSVRRLINKYSEKANLPKE 242

Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            S + +R          G     L      K++   + Y
Sbjct: 243 VSPYTLRHSFCIYMLKNGMPKEYLAKLLDLKSIGLLDIY 281


>gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA]
 gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA]
          Length = 379

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
             K  +    +    +    G +  +++ S  ++   +        +  +T  +I    +
Sbjct: 100 TNKSESFVDFVER--RIEERGDITESTKASHRTFAASLREFDRIIYFSDLTKANITLYDD 157

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
                     +   +    +     A++ + +  +P       + K    +  T E++++
Sbjct: 158 WLHAKGYSQPTIYNYHKRNKRYIHEAIKFDLLKNDPYKGERFSRGKHAIRKYLTAEELKK 217

Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            K    +     + R  F F  Y+G+  +D  +   +       +               
Sbjct: 218 VKDAQIDSETICRVRDLFIFQAYTGISYADLAKFNFKRDVQKRGNKYVILDIR----LKT 273

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
           +    ++ ++P  +     +     ++  Q+++  K  A  AG+++  + H  R   AT+
Sbjct: 274 EENYFIVLLSPAMEILRKYDYVLPIISNQQYNLRLKIVADYAGLDRNLTVHMSRHTFATM 333

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327
             + G     +    G   V   + Y K  +
Sbjct: 334 CLNNGVKMENVSKMLGHTNVRTTQQYAKVLN 364


>gi|320197761|gb|EFW72369.1| putative integrase [Escherichia coli EC4100B]
          Length = 426

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 110/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4]
          Length = 284

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/257 (7%), Positives = 64/257 (24%), Gaps = 12/257 (4%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136
            +         +  +  S+       +    +  +  +    +        + PS+    
Sbjct: 21  RFEAWLLRNGKSYQTIRSYLYTARHFLSLYPEVSHDNL---MLYKCCLIDHYKPSTVNLR 77

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196
           + +M    ++        +   L  +           +        +           A 
Sbjct: 78  IRAMNCFMEFLDLPASRVLMVRLQQKPFLENVISQADYEYLKKCLLRDGK---LTYYFAV 134

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTPIGKE 253
             +  +G+R S+  +  V+ +      + ++           +     +  L        
Sbjct: 135 RIMATTGVRISELLQIRVEDMIRGQMDLYSKGDKIRRVYFPQNVQETCLLWLQNEKRTSG 194

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310
           + F+N     +         K  + +  ++      H  R   A    +       L   
Sbjct: 195 SLFLNRFGNPITTNGIRDQLKFFSLRYNLDPSVVHPHAFRHLFAKNFIEKCDDIALLSDI 254

Query: 311 YGWKTVDQAETYTKGAD 327
            G ++++    Y   + 
Sbjct: 255 LGHESIETTRIYLHKSS 271


>gi|288927810|ref|ZP_06421657.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330644|gb|EFC69228.1| integrase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 414

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 84/277 (30%), Gaps = 20/277 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV-- 123
              + +Y K    G  A ++   + + +  +           D   ++I    I      
Sbjct: 114 DHFMEDYAKKVDCGMKAKSTLTKYHAVYSHLKDFLQSRYHVSDIALKEIQPTFITDFETY 173

Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181
               +    +S   +   +R+L   AV   ++   P      PK +TE     TKE++ Q
Sbjct: 174 LLAEKHLHCNSVWVYSCPVRMLLHRAVENGWLIRYPFPDCSVPKEETEK-GFLTKEELGQ 232

Query: 182 FKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
             +        +  R  F F  ++GL   D      +++ +N                + 
Sbjct: 233 LINAPKMNFKRTFIRDLFLFCAFTGLAYIDLKNLREENIVSNPLDGSVWIHTYRQKTGVE 292

Query: 239 DGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293
                L   L +    K            +     +  +    K  ++K  + H  R   
Sbjct: 293 TNVRLLDIPLQIMKKYKGLCDDGRVFPVPSYNSCKMILRTVMKKCCIHKHITWHMARHTM 352

Query: 294 ATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           AT+     G     + +  G K +   + Y K  +  
Sbjct: 353 ATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEK 389


>gi|224283257|ref|ZP_03646579.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140403|ref|ZP_07802596.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132913|gb|EFR50530.1| phage family integrase [Bifidobacterium bifidum NCIMB 41171]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 76/278 (27%), Gaps = 23/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
                 ++      G++   +   +    ++  ++I      D  ++  + + +G     
Sbjct: 12  FCDYYEQWISVYKEGAIREVTMKKYRLTQAWLGRLIPDLKLADMDRVNYQKLINGYAEHH 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              ++          +         Q        +  + P  K        +        
Sbjct: 72  ERQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADL 131

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
              +G         +  +GLR S++             ++   KT               
Sbjct: 132 ELGKGPSWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNA 191

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            ++  V+L    +  L+                K+  +  +        +A V   S HG
Sbjct: 192 SSVRKVQLDWQLIMQLSTLLKDMPAGDPIFVNGKVYNSTANNILARHCERANVPVISIHG 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           +R   A++   AG +   +    G  +++  + TY   
Sbjct: 252 LRHTHASLLLFAGVSIASVSKRLGHASMNTTQDTYLHV 289


>gi|197303539|ref|ZP_03168578.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
 gi|197297537|gb|EDY32098.1| hypothetical protein RUMLAC_02261 [Ruminococcus lactaris ATCC
           29176]
          Length = 425

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 106/402 (26%), Gaps = 64/402 (15%)

Query: 1   MTPSLRLPPFVTKERT----RHGKIIYYFRKGHGRRIRL---------PYPHESTFIPAY 47
           M+   R                G+  Y +   +G+R  +           P+        
Sbjct: 1   MSEKRRDSKNRILRTGESQEADGRYKYRYIDANGKRKSVYSWRLVATDSVPYGKKDNAPL 60

Query: 48  MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-S 106
                      + +  P     T+  L+S+Y  +     +   +R  + +  + + +   
Sbjct: 61  RDQEKLINRDLDDMIVPDGGGLTVSQLVSKYIATK--TGVKHTTRAGYGTVMNLLEKDPF 118

Query: 107 GDFDYRKIT----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161
           G+    K+      + +    +  + + S+       +R  F+ AV  + +  NP     
Sbjct: 119 GERRIDKVRLSDAKEWLIKLQQVDRKSYSAIHSIRGVVRPAFQLAVDDDILRKNPFEFQL 178

Query: 162 -ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHL 217
                         TK+  + F  F    +     ++ +     +G+R S+     ++ L
Sbjct: 179 ATVLVNDAVTREAITKKQEKTFLEFIKNDAHYCKYYDGMYILFKTGMRISEFTGLTLKDL 238

Query: 218 QNNIFSIKTQKTGTI------ITVELPDGFMKLLAMTPIGKETFFINNDKQK-------- 263
                +I              I         +++ M     E F      +         
Sbjct: 239 DMENRTINIDHQLQKTGTLVYIDTTKTYAGTRVIPMQDDVYECFQNIIKARPKLKVEPMI 298

Query: 264 -------------------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG 301
                                   F    +       +     + H  R    +  A +G
Sbjct: 299 DGYSGFLCFDKDGKPMVAMHWEKYFQHAVQKYNRIYRIQLPKITPHVCRHTYCSNMAKSG 358

Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342
                L    G   +     TYT    ++   I+   +++  
Sbjct: 359 MNPKVLQYLMGHSDISVTLNTYTHL--KLDDAIEEVEKLAKK 398


>gi|325851800|ref|ZP_08171002.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325484711|gb|EGC87622.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 439

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 105/339 (30%), Gaps = 41/339 (12%)

Query: 38  PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFE 96
           P +     A+ +      P  E +   +  P T   +  E+ +     +    ++   F 
Sbjct: 108 PTQEQIKEAFNAL---HKPIEEEVKPRKSMPNTFYKVFDEFVRDCGRQNDWTDSTYEKFA 164

Query: 97  SYFDQIIRKSGDFDYRKITTK----HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152
           +  + ++    +  +     +    ++    + ++   S+  + L+ ++   +WA ++  
Sbjct: 165 AVKNHLMNFRDELTFDFFDERGLNNYVTYLRDVKEMRNSTIGKQLSFLKWFLRWAFKKGV 224

Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRC 206
              N   S +   + T+    +   +       +   +      + R  F F  ++GLR 
Sbjct: 225 HQNNAYDSYKPKLKSTQKKIIFLTWEELNKLREFEIPTTKQALDRVRDVFLFQCFTGLRY 284

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
           SD        ++ +   + T KT   + +EL +    +L                     
Sbjct: 285 SDVFNLRRSDIKGDHIEVTTVKTSDSLIIELNNHSKAILDKYKDVAFEDDKVLPVI--TN 342

Query: 267 TQFSIWFKAKATKAGVN----------------KSA-------HGVRKFSATISADAGAT 303
            + + + K  A  AG++                 +        H  R+     +   G  
Sbjct: 343 QKMNDYLKELAELAGIDEPVRQTYYRGNERIDEVTPKYALLGTHAGRRTFICNALALGIP 402

Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342
              +M   G       + Y   AD I+       + + +
Sbjct: 403 PQVVMKWTGHSDYKAMKPYIDIADDIK--ANAMSKFNQL 439


>gi|323180893|gb|EFZ66431.1| phage integrase family protein [Escherichia coli 1180]
          Length = 431

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/411 (12%), Positives = 112/411 (27%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAY--------MSALTGST 55
           ++ P  V       GK+  ++  KG   R  L  P  +               +  TG  
Sbjct: 6   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVF 62

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 63  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKENEVAKTSLNTYRAVIKNILSIIG 121

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 122 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 181

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 182 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 240

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 241 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 300

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 301 HIIDVHLKEYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 360

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 361 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 411


>gi|315080448|gb|EFT52424.1| site-specific recombinase, phage integrase family
           [Propionibacterium acnes HL078PA1]
          Length = 420

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 102/369 (27%), Gaps = 51/369 (13%)

Query: 24  YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83
           Y + G  +R+R      +         L            PR    TL   ++ +  +  
Sbjct: 28  YDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGG-LTLNQWVNIWLATKQ 86

Query: 84  WGS-LAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSM 140
               +   + +     Y   I  K G    +++T + I+  + +      +  +    +M
Sbjct: 87  ASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKTM 146

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRK-------TEGIRPWTKED--MQQFKSFWSEGSQ 191
                 AV+   V +NP   +  P+++       T  I  W++    M ++ +       
Sbjct: 147 NAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECELH 206

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------------IT 234
            R      +  GLR ++            +  +  ++                      T
Sbjct: 207 DRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNRT 266

Query: 235 VELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281
           + LP+ + +                   +   T         M    +         K G
Sbjct: 267 LMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYPMYNKLWRNTIVTYMAKEG 326

Query: 282 VNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333
                       H  RK  A+  A  G      M+  G  +      YT   AD+ R  +
Sbjct: 327 QEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKAL 386

Query: 334 KNSRRISSV 342
           +    +   
Sbjct: 387 EGLSNVYEH 395


>gi|257458874|ref|ZP_05623997.1| ferredoxin, 4Fe-4S [Campylobacter gracilis RM3268]
 gi|257443862|gb|EEV18982.1| ferredoxin, 4Fe-4S [Campylobacter gracilis RM3268]
          Length = 291

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 17/269 (6%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126
           L  L + Y +      L  ++  S  S +   I    G+ D   I+   I+         
Sbjct: 3   LNELFNNYIEFYELI-LRKHTLESDISMYKKHIASSLGEKDVSDISFLDIQRLCNGLIKA 61

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
            +   +    L  + V+FK+A + E +A NPC  VE PK   +    +     +QF    
Sbjct: 62  DYKIKTVKNILAKLHVIFKFAQKLELIAKNPCDFVELPKFDNKRYFDYPLSVQRQFIKAI 121

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E         F L  G R ++        +     +            ++       L 
Sbjct: 122 CENEADSADIFFFLLHGRRKNEVLSLCWSDVNLKTKTYVIPFQINKAKRDMVYSMSDELY 181

Query: 247 MT-------PIGKETFFINNDKQKMNATQF---SIWFKAKATKAGVNK-SAHGVRKFSAT 295
                                      ++F      + +   +  + K   H +R    T
Sbjct: 182 KRLLKRYIAAKQNNQLNGYVFVNPATGSKFVDLRRSWNSLLKRNNLPKIRLHDIRHLIGT 241

Query: 296 ISAD-AGATAHELMATYGWKTVDQAETYT 323
              +       ++  T G   +   + Y 
Sbjct: 242 YCINYLKLPIEQVSFTLGHTNIITTQKYI 270


>gi|184159025|ref|YP_001847364.1| integrase [Acinetobacter baumannii ACICU]
 gi|294840639|ref|ZP_06785322.1| integrase [Acinetobacter sp. 6014059]
 gi|183210619|gb|ACC58017.1| Integrase [Acinetobacter baumannii ACICU]
          Length = 534

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 107/388 (27%), Gaps = 57/388 (14%)

Query: 11  VTKERTRHGKIIYY----FRKGHGRRIRLPYPHESTFIPAYM----SALTGSTPKREYIN 62
           VTK + ++G + Y      ++      +         +         A     P++    
Sbjct: 4   VTKRQLKNGTVRYRAQVRVQREGYPPYKASKTFSKKSLADEWIKRTEAEIELNPEKMLNP 63

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRS 121
               K  TL   I++Y         A N   S  S    I   +  + +   +T +    
Sbjct: 64  DAELKHKTLAEFITQYLDE------ADNFAESKTSALKFIASLEISEKNIYSLTRQDFSD 117

Query: 122 GVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----------S 160
               R+            PS+A++ L+ ++ +   A       +   +            
Sbjct: 118 FAIWRRKGDPITGRDGVAPSTALKDLSHIKAVLVHAQFVWGEPLENVISEFEKALIGLTK 177

Query: 161 VERPKRKTEGIRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213
                +     R  T            +      +     L   F +YSG R  + C   
Sbjct: 178 ARIVTKSKLRDRLPTDEELQALTTFFYKTWKRKKKSVPMHLIMWFAIYSGRREDEMCTLR 237

Query: 214 VQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETF---------FINND 260
           +                   G+    +      K + +     E           + +  
Sbjct: 238 LTDFDRANSQWLVRDAKHPDGSEGNHKYAHFEPKAIELANKFLEHDTRKRILELGYSDQL 297

Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +N+   S++F        + +   H +R  +AT  A+ G +  +L      ++ +  
Sbjct: 298 LIPVNSRTVSVYFTRACNALEIEDLRFHDLRHEAATRYAEDGFSIPKLQTITLHESWNTL 357

Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSDD 347
           + Y     R R          +  D ++
Sbjct: 358 KRYVNLKKRGRRLDFAEAMSVAEADYNN 385


>gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 439

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 79/293 (26%), Gaps = 40/293 (13%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT---------TKH 118
           L+   + +       + + ++  S    ++ ++      G     KIT         T  
Sbjct: 12  LRDWFTVFL--PRQRAASPHTIESARRAWNMLLSHVCDTGGIPVDKITFPMLDRACITGF 69

Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKE 177
           +      R  T ++  Q L  +R  FK+A   +  +AI+       P  K    +P +  
Sbjct: 70  LEQTRAERNWTAATYNQRLACIRSFFKYAATAEPTLAIHLADLAGIPLMKAPATKPVSHM 129

Query: 178 DMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
             Q       Q       G + +     +  +  R ++   A +  L     +I     G
Sbjct: 130 SQQAIKALLAQPDPTIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDATRLTIDLLGKG 189

Query: 231 TIITVELPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATK 279
           +                                     ++ K++M+    +   +  A  
Sbjct: 190 SKPRRIPITKETAAHYRRYTAAFHPDPQLGDPLFYTIHSHRKRRMSDDNAARIIRQHAQA 249

Query: 280 AGVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
           A             H +R   A     AG     L    G    +    Y   
Sbjct: 250 AHRKCAEVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHA 302


>gi|154504936|ref|ZP_02041674.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|154505966|ref|ZP_02042704.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|167767740|ref|ZP_02439793.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
 gi|153793465|gb|EDN75885.1| hypothetical protein RUMGNA_03508 [Ruminococcus gnavus ATCC 29149]
 gi|153794819|gb|EDN77239.1| hypothetical protein RUMGNA_02446 [Ruminococcus gnavus ATCC 29149]
 gi|167710479|gb|EDS21058.1| hypothetical protein CLOSS21_02275 [Clostridium sp. SS2/1]
          Length = 396

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/378 (11%), Positives = 93/378 (24%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K    +GK  + +         +P           +S        ++ +N      
Sbjct: 25  RYVYKYTDIYGKPQFIYSWK-----LVPTDKTPAGKRDDISLREKEAQIKKDLNDGIDTA 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
               T+  L  +  K++   ++   +    +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYEK--KNSQRKNIKRATEKGRQYLMNALKNDPLGMRAIDTVKQSDAKEWAI 137

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                     +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 138 RMSEKGYAYKTIDNYKRSLKASFYMAIQDDCIRKNPFEFKLSDVLEDDTEQKVILTPEQE 197

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
           ++  +F  +    S+       LL +GLR S+ C         N       +      + 
Sbjct: 198 ERLLAFMEKDKIYSKYYDEVVLLLETGLRISEFCGLTTHIDMQNRILNIDHQLLKDSEIG 257

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNAT----------------------------- 267
                 K          T       Q++                                
Sbjct: 258 YYIETPKTKNGKRELPLTERAYQAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGN 317

Query: 268 ---QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
                    K             + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YEGMVRGLIKKYNKYHKDKLPNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|51245892|ref|YP_065776.1| integrase [Desulfotalea psychrophila LSv54]
 gi|50876929|emb|CAG36769.1| related to integrase [Desulfotalea psychrophila LSv54]
          Length = 406

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/372 (11%), Positives = 96/372 (25%), Gaps = 41/372 (11%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIR-----LPYPHESTFIPAYMSALTGSTPKR----- 58
             +      +G+ I   R     + +     L    E +   A    +   +        
Sbjct: 32  KGLMLRVKANGRKILRARIWDTSKKKEVQENLGEFPELSINDARDIVVARVSDIAKGIDV 91

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118
           +      +   +L  +   +  +    ++          Y   I R+ G     +IT   
Sbjct: 92  QERKKQERAEQSLDDVFDIWLNTHAKLNIK-RWPEEVRRYELYIKRRLGKKKLSEITPDV 150

Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           I +   +             + + A +   ++  +F  A        +     +  KR  
Sbjct: 151 ILTWRNALLKQKKQRGNDCLSTAMAHRAFVTLSSIFGKAAANIDNPCSKVQRYKEKKRTE 210

Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
                   +         +     R      LY+G R ++        +           
Sbjct: 211 FLGSD-HLKQFFSRLDHEATDELLRDYLLLSLYTGARQANIRSMRWSEIDLKTQLWIIPA 269

Query: 229 TGTIITVELPDGFMK------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
             +     +                   G +  FI++  +  +  +    +K     A +
Sbjct: 270 DKSKNAEPMVIPLASQAITILAKRKERYGGDFVFISHKSKTGHINEPRRLWKKFLADAEL 329

Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--------KGADRIRLG 332
                 H +R+   +  A +G++   + A+ G K+      Y         K  +R    
Sbjct: 330 PTSYRFHDIRRTLGSWQAISGSSTKIIGASLGHKSEQATAHYAYLTVDPVRKSVER---A 386

Query: 333 IKNSRRISSVVD 344
           I+         D
Sbjct: 387 IEAMHEAGEKED 398


>gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ]
          Length = 366

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 86/323 (26%), Gaps = 22/323 (6%)

Query: 20  KIIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77
           KI    R G  +  R        +      M        +  Y           K    +
Sbjct: 7   KIRVKKRIGGRQVERKRTLPLSSTQGQRRAMKKELQEELEELYQAYLNPPSNIWKEAKKQ 66

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137
           Y    +  + ++ +  + +   ++  ++  D     I+   +   + + +         L
Sbjct: 67  YYGYMNKEN-SLETLYNRKCVLEKHTKQWDDRPIETISYNDVLGLITTLESNKHEV---L 122

Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAF 196
             ++ +F   V    +  NP   +  PK+    ++  T  ++ +  ++  E        F
Sbjct: 123 KYIKQVFNLQVDMRTIPSNPASKITFPKKTDRKLQAMTVGEITKLLTYMKEVDHSWFSIF 182

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------------IITVELPDGFMK 243
                 GLR  ++       +      +  Q+                   V +     +
Sbjct: 183 YVTYQFGLRHGEALGIKFSDIDWERNHLFIQRAWKKKEKIWGPPKNGTSRFVPMNSQVRE 242

Query: 244 LLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKS-AHGVRKFSATISADAG 301
            L     GK        + K           K      G+  +  H +R    T     G
Sbjct: 243 YLLKLYKGKHEDEFILPRIKKWEGGKGAEVLKEIQRHIGIKLTNYHSLRASFITHLLRKG 302

Query: 302 ATAHELMATYGWKTVDQAETYTK 324
                +    G K +     Y +
Sbjct: 303 QDIISVQEMVGHKELKTTMGYIR 325


>gi|228951165|ref|ZP_04113280.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808462|gb|EEM54966.1| Prophage LambdaBa02, site-specific recombinase, phage integrase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 322

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 34/290 (11%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRS---GVESR 126
           L+ ++         A ++   +      I+    +   + +   +T K IR+     +  
Sbjct: 24  LVKDFLIEKKAQGKAASTLQQYNWDLRIILFLIHQHFENKNLIDLTRKDIRNLSIIFQEM 83

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
             + +     ++++R   ++    +       +           IR  T     Q     
Sbjct: 84  GMSNARVNGLISALRSALEFCADDDDYNYEFNVGSRVRGLPKNPIREITFITEDQINWLI 143

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246
            E  +     +++L + L  S    A    +        T++  T +         +L  
Sbjct: 144 DELLEK---EKYMLATYLALSYYSAARKNEVYQVQKEGLTEQYYTNVVRGKRGKKFRLYY 200

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------------------- 285
              + K        + K       +       +  +NKS                     
Sbjct: 201 NHRVQKCIRLYIKQRGKDTIPDLFVRVYKNGERKRLNKSVFNYWCDIFAKMLNEKEGKEF 260

Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332
               H  R          G    +L +      +   E+Y K      + 
Sbjct: 261 KMNPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTESYLKDRSEEDIA 310


>gi|224535543|ref|ZP_03676082.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522833|gb|EEF91938.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 268

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 75/259 (28%), Gaps = 16/259 (6%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           ++       +LA N+  ++                +++  +++ +          P +  
Sbjct: 5   DFEAFLRQENLAQNTITAYLYAVKDYYAHY-----KELNKRNLIAYKSYMIDNFKPKTVN 59

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194
             +  +    ++  +                        +   +  + +    +      
Sbjct: 60  LRILGLNKYLRYVGKSRLHMKTIKEQQRTYLENVISNADY---EFLKNRLRTEKNRMWYF 116

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIG 251
           A  FL  +G R S+      +H+    F I T+ +               ++ L+     
Sbjct: 117 AVRFLAATGARISELIHLKTEHITAGYFDIYTKGSKVRRIYIPKILCAEAIEWLSEQSRF 176

Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELM 308
               F+N   Q++     +   K  A K G+N+     H  R   A    D       L 
Sbjct: 177 SGYVFMNQYGQRITTRGIAQQLKNYAIKYGLNEKVVYPHSFRHRFAKNFLDKFNDISLLA 236

Query: 309 ATYGWKTVDQAETYTKGAD 327
              G ++++    Y + + 
Sbjct: 237 DLMGHESIETTRIYLRRSS 255


>gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1]
 gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1]
          Length = 384

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 90/347 (25%), Gaps = 51/347 (14%)

Query: 19  GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78
           GK+ +  R+          P  +     + +AL           +       +   I + 
Sbjct: 46  GKVAWRRRR----------PMSTQLRSRFETALRLFDESLSGTLAVGSVELAVGE-IRQL 94

Query: 79  RKSAHWGSL--AVNSRISFESYFDQIIRKS---GDFDYRKIT---------TKHIRSGVE 124
                      + ++  S    ++ ++R     G     KIT         T  +     
Sbjct: 95  LTHLRDRGHVASPHTIESARRAWNMLLRHVCDTGGIPVDKITFPMLDRACITGFLEQTRA 154

Query: 125 SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180
            R  T ++  Q L  +R  F++A   +  +AI+       P  K    +P +    Q   
Sbjct: 155 ERNWTAATYNQRLACIRSFFEYAATAEPTLAIHLADLAGIPLMKAPATKPVSHMSQQAIK 214

Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236
               Q       G + +     +  +  R ++   A +  L     +I     G+     
Sbjct: 215 ALLAQPDPIIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDAQRLTIDLLGKGSKPRRI 274

Query: 237 LPDGFMKLLAMTPIGKETFF-----------INNDKQKMNATQFSIWFKAKATKAGVNK- 284
                                           ++ K +M+    +   +  A  A     
Sbjct: 275 PITKETAAHYRRYTAAFHPDPQLGDPLFYTIHSHRKTRMSDDNAARIIRQHAQAAHRKCA 334

Query: 285 ------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   H +R   A     AG     L    G    +    Y   
Sbjct: 335 EVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHA 381


>gi|310287616|ref|YP_003938874.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|311064529|ref|YP_003971254.1| integrase protein [Bifidobacterium bifidum PRL2010]
 gi|309251552|gb|ADO53300.1| phage family integrase [Bifidobacterium bifidum S17]
 gi|310866848|gb|ADP36217.1| Integrase protein [Bifidobacterium bifidum PRL2010]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 76/278 (27%), Gaps = 23/278 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127
                 ++      G++   +   +    ++  ++I      D  ++  + + +G     
Sbjct: 12  FCDYYEQWISVYKEGAIREVTMKKYRLTQAWLGRLIPDLKLADMDRVNYQKLINGYAEHH 71

Query: 128 HTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184
              ++          +         Q        +  + P  K        +        
Sbjct: 72  ERQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKPPCSKKTKYLNQFELHAVLADL 131

Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------- 230
              +G         +  +GLR S++             ++   KT               
Sbjct: 132 ELGKGPSWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVSKTWDYKNGGGFVPTKNA 191

Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288
            ++  V+L    +  L+                K+  +  +        +A V   S HG
Sbjct: 192 SSVRKVQLDWQLIMQLSTLLKDMPASDPIFVNGKVYNSTANNILARHCERANVPVISIHG 251

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325
           +R   A++   AG +   +    G  +++  + TY   
Sbjct: 252 LRHTHASLLLFAGVSIASVSKRLGHASMNTTQDTYLHV 289


>gi|293389996|ref|ZP_06634330.1| putative integrase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950530|gb|EFE00649.1| putative integrase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 363

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 96/315 (30%), Gaps = 31/315 (9%)

Query: 23  YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82
           +  +       +           A+ +A+       EY + P     T   LI +Y +  
Sbjct: 41  WRVQIRRKGVNKSKTFRTKAEAQAWANAIESQIAAGEYSDVP---DITFADLIHKYVREI 97

Query: 83  HWGSLAVN--SRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFL 137
                +    +         ++     G      +  K      + R     P+S ++ L
Sbjct: 98  TPQKKSARHETLR-----LHRMADMPIGKVRLVDLCLKDFEQWRDERLKSIKPASMLREL 152

Query: 138 TSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED---------MQQFKSFWS 187
            ++  +      + +Y+  N    + +P    E  R +++ +                 +
Sbjct: 153 NTVSNIITVAVEKWQYLKKNCIKGLAKPTGIKERTRRYSESELQRLIFVSGCDLSYPPHN 212

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLL 245
             ++   A  F + + +R  + C A   +L        I T K G    V L +  M++L
Sbjct: 213 VINRVGAAILFAIETAMRAGEICNATWANLNLKQHLLHIPTSKNGYPRDVPLSNKTMEIL 272

Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
                 K     +  + +  +      F+     AG+   +   H  R+ + +  +    
Sbjct: 273 NHLAQVKSADDDHIFQLQ--SRSLDTIFRKIKENAGLDEADLHFHDTRREALSRLSKK-V 329

Query: 303 TAHELMATYGWKTVD 317
               L    G + + 
Sbjct: 330 DVMTLAKISGHRDIK 344


>gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c]
 gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c]
          Length = 422

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +++        +A A  AG+   S H +R   A    D GA    +    G  +V   + 
Sbjct: 308 RLSRQSAWSALRAAAEAAGIEGVSPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQI 367

Query: 322 YTKG-ADRIRLGIKNSR 337
           YT   AD++R     + 
Sbjct: 368 YTLVPADQLREVYAAAH 384



 Score = 42.8 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 12/138 (8%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS-- 106
           A+  +                   L++ Y         LA NS +++     +       
Sbjct: 6   AVDVTAAPDPDPAREPAGAVDPGELVARYLGHLAGERGLAHNSVLAYGRDLRRYHEYLTA 65

Query: 107 -GDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINP 157
            G      +    +     + +           +S  + L ++R L ++A R+  +  + 
Sbjct: 66  RGLTSLADVDEATLGEFATALRGGDGEHPPLAAASVARMLVAVRSLHRFAQREGSLVEDV 125

Query: 158 CLSVERPKRKTEGIRPWT 175
              V  P       +  T
Sbjct: 126 SQPVRPPAPPRRLPKALT 143


>gi|257125272|ref|YP_003163386.1| integrase [Leptotrichia buccalis C-1013-b]
 gi|257049211|gb|ACV38395.1| integrase domain protein SAM domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 284

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 91/269 (33%), Gaps = 17/269 (6%)

Query: 78  YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAI 134
           + +   +    + N+   +     Q        D+ +I  K I S +++   K   +S +
Sbjct: 6   FLEFLKFEKRSSQNTLNGYNRDLTQFF-LFVKKDFSEIGEKEISSYIDNLNKKLRKNSVL 64

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSFWSEGSQ 191
           + ++ ++  +K+    + +  +P   ++  KR+ +     T    + +         G Q
Sbjct: 65  RKVSVLKTFYKFCYLNKLITKDPAGIIKNLKREYQPPETLTLEEIKQIVDNCPNTPAGIQ 124

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTIITVELPDGFMKLL 245
            RL  + L+ +G   S+     ++ ++N             +    +I           L
Sbjct: 125 NRLIIKLLIVTGAMISEILNLKIKDIENQYDKFIKTLGKNSKYQIKLIDNSFEIEIKNYL 184

Query: 246 AMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302
            +     +    +          +F    K  A  A + K+   H  R     I ++A A
Sbjct: 185 EIYRPKLKNANESLKIFPDIRREKFWKNLKIIAQNAKIEKNVYPHIFRNSLVGILSEANA 244

Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331
               +    G   +  A+   K  ++ +L
Sbjct: 245 DICIIQEVLGKVNITTAKI-KKNVEKSKL 272


>gi|325271707|ref|ZP_08138195.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
 gi|324103165|gb|EGC00524.1| Tn554 transposase A [Pseudomonas sp. TJI-51]
          Length = 376

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 89/331 (26%), Gaps = 73/331 (22%)

Query: 72  KWLIS---EYRKS---AHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGV 123
             LI     Y          + +  +  ++  +  +      +      ++  +HI    
Sbjct: 28  AELIESANRYLFHIAVVRGRTRSPATWRTYADHLYEFFSFLEENALFWTRVNQEHIAVWR 87

Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE------------------ 162
            S        S+  + L++    + W  RQ      P  + +                  
Sbjct: 88  NSMLDRGLSRSTINKRLSTTSAFYTWCARQGLAEQLPFETQDVLVSKPKGFLAHVDASGN 147

Query: 163 -------RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
                    + + +  +  +  +  QF    S   + +L    +L  GLR  ++C   V+
Sbjct: 148 RLQANELTLRTQQQLPKFLSIPEAVQFIGALSPR-RTQLVAYLMLLCGLRREEACALDVR 206

Query: 216 HLQNNIFSIK-------------TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262
            L                       K      V +P      L    +           +
Sbjct: 207 VLPTPAGHSPSKAIKMTLDPSLTPTKGSKERWVMVPYDLAGHLFDYMMRDRPKLAGMYHK 266

Query: 263 KM----------------NATQFSIWFKAKATKAGVNKSAHGVRKFSAT----ISADA-G 301
           +                 +     + F+  + K+GV  + H +R    T      ++  G
Sbjct: 267 RHGAETTRLFLTRDGAELSLDGLDVTFQRASAKSGVKCTPHRLRHTFGTYEFLRMSERRG 326

Query: 302 AT--AHELMATYGWKTVDQAETYTKGADRIR 330
                H +    G  ++   E Y   AD ++
Sbjct: 327 TDGALHWVRDRLGHSSITTTEVYVHAADLLK 357


>gi|294853357|ref|ZP_06794029.1| hypothetical protein BAZG_02313 [Brucella sp. NVSL 07-0026]
 gi|294819012|gb|EFG36012.1| hypothetical protein BAZG_02313 [Brucella sp. NVSL 07-0026]
          Length = 418

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 28/337 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 70  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 127

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
            ++  +R      +++ +  K G+    +IT + +R+  ++   +  PS+A+     M +
Sbjct: 128 -MSETTRNMRRGTYERDLKPKFGNRKLIEITYEDLRALTDAIVEQGRPSTAVVCREIMML 186

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +F+WA+ +     NP   V          R           M Q+          R A +
Sbjct: 187 VFRWAIERGQKVENPADLVRPSTIAKFEPRDRALTPEEIGLMYQYMERIGTTPSIRAAAK 246

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     ++L +         
Sbjct: 247 LLLLTMVRKSELTNATWSEINFIDALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAG 306

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G        H +R+ ++T+  +AG 
Sbjct: 307 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGY 366

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337
               +      +       Y K    D+ R  +++  
Sbjct: 367 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWA 403


>gi|297581661|ref|ZP_06943583.1| site-specific recombinase [Vibrio cholerae RC385]
 gi|297534068|gb|EFH72907.1| site-specific recombinase [Vibrio cholerae RC385]
          Length = 433

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 107/384 (27%), Gaps = 46/384 (11%)

Query: 10  FVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKRE 59
            +     + G   +  R       R   L      +   A ++A         G  P  E
Sbjct: 42  GLYFCVRKQGSPYWMIRYTTAKGRREATLGQFPLMSLADARIAAAYFRKEVRDGIDPLLE 101

Query: 60  YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119
                     T+  L  ++ ++     L  + +I +  Y   I    G     ++T + +
Sbjct: 102 KQKIELPDIETVDQLFHDWYRTDLSRRLK-HPKIPYRVYTKDISPVIGIKCIAEVTARDV 160

Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCL--------SVERPKRKTE 169
           R  +E  + +  P+ A   L  M+ LF+ A+R +    NP           VE  K +  
Sbjct: 161 REVLERIRESNRPTIANDTLMYMKQLFRHAIRLDLTLNNPAAAFTVDDAGGVESSKDRML 220

Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----- 224
                            S G    LA    L  G+R S+ C A  + +            
Sbjct: 221 SKEEIHYAFSVFHTHINSFGRDNYLACCLFLVLGVRKSELCEAMWREMDLTTGVWDLPKE 280

Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-AT 278
                                 +++ A            + +  M     +         
Sbjct: 281 RSKTGVPISIPLPRQAIAWFNELQIRACGSPYVFPARRASHRPHMGPDTLNRAISKLFGR 340

Query: 279 KAGVNK------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG- 325
           + G  K            + H +R+   +++A  G   +        K       Y +  
Sbjct: 341 EPGRKKQQPNKMGKLEHFTVHDLRRTFRSLAASLGIAGNVAERCLNHKLKGVEGIYDRHD 400

Query: 326 -ADRIRLGIKNSRRISSVVDSDDP 348
             +  R+  +    +   + + +P
Sbjct: 401 YFEERRIAHQTVADVIEPLVNFEP 424


>gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 417

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 78/272 (28%), Gaps = 27/272 (9%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136
            S A  + ++       +     +   + I    I        R  ++ R    S+    
Sbjct: 121 RSRAEGTYLNLFYSDRNLREFVENKGVQDIPIGIITEDLFEEYRFFLKKRGLKASTVNSN 180

Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWSEGSQPRL 194
           L  +  L   AV +  +  NP  + +  K + +    +      +   +    E    R 
Sbjct: 181 LCWLSRLIFRAVSKRIIRCNPFENAKYEKEEKKIRFLQKGDVMKLMAMRMNDKETELARQ 240

Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
            F F  ++GL  +D       H+Q       +  K ++   +  +       +++     
Sbjct: 241 MFIFACFTGLAVADMEHLQYGHIQTAVDGQKYIRKERQKTKVEFIVPLHPVAEVIINHCR 300

Query: 251 GKETFFINNDKQKM-----------NATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297
            ++         K            + +             G+ +    H  R    T+S
Sbjct: 301 NEQKRNEEQQTMKEYGDSLVFQPDSSRSVMGKNLSIVGKACGIRQRLSYHIGRHTFGTMS 360

Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
             AG     +    G  ++   + Y +  D  
Sbjct: 361 LSAGIPIESIAKMMGHASISSTQVYAQVTDNK 392


>gi|256842459|ref|ZP_05547961.1| transposase [Parabacteroides sp. D13]
 gi|298374954|ref|ZP_06984911.1| transposase [Bacteroides sp. 3_1_19]
 gi|256735815|gb|EEU49147.1| transposase [Parabacteroides sp. D13]
 gi|298267454|gb|EFI09110.1| transposase [Bacteroides sp. 3_1_19]
          Length = 402

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 101/333 (30%), Gaps = 45/333 (13%)

Query: 39  HESTFIPAYMSALTGSTPKREYINSP-------RKKPTTLKWLISEY------------- 78
                  +Y++AL     K  +              P T+  +I  Y             
Sbjct: 56  GSGEGRKSYLAALKNQIDKDLFRIKKCINRLNQEDTPFTVDRIIELYTAPEGNCTFLLYG 115

Query: 79  ---RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129
                        V +  ++++  +   +     GD    ++ +  + +     K T   
Sbjct: 116 KELLVELRQIG-KVRTAGTYQNALNSFERFRGHRGDIPLDEMDSNQMITYESWLKGTGVC 174

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
           P+++  ++ ++R ++  AV +  V                  R  +   +++ +      
Sbjct: 175 PNTSSYYMRNLRAIYNRAVSEGLVVQRNPFKHVYTGIDKTKKRAVSLSVIRRIRDLDLNK 234

Query: 190 SQ---PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245
                 R  F F  Y+ G+   D      + LQN I + + +KTG  + ++      +L+
Sbjct: 235 KSLIFARDIFMFSFYTRGMSFVDMAFLKKKDLQNGILTYRRKKTGQQLFIKWEKPMQELI 294

Query: 246 AMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294
                        I +        + +  A + +   K    +   G+  + +  R   A
Sbjct: 295 DKYNTSETSYLLPIIQNNGVDEWHQYQNEAHRINRNLKHIGKQIGLGIPLTTYVARHAWA 354

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327
           +I+     +   +    G  +      Y    D
Sbjct: 355 SIAQSKNVSLPVISEALGHDSEQTTRIYLASLD 387


>gi|254880918|ref|ZP_05253628.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639927|ref|ZP_07994655.1| integrase [Bacteroides sp. 3_1_40A]
 gi|254833711|gb|EET14020.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388466|gb|EFV69317.1| integrase [Bacteroides sp. 3_1_40A]
          Length = 372

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 106/367 (28%), Gaps = 41/367 (11%)

Query: 13  KERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---- 65
           K++   G++  Y      G  R+  L    ++       +           I + +    
Sbjct: 7   KKQLNKGRVSLYLNYSYNGKRRKEYLGIILDTPTSAERRAENRNKVLIARQIRAKKELEF 66

Query: 66  --------KKPTTLKW--------------LISEYRKSAHWGSLAVNSRISFESYFDQII 103
                       T                 LI +Y  + H     +    +  ++     
Sbjct: 67  LSVEYHLNDIENTFDDILPTDKSNVPDFYILIGQYLDTYHKKDKKM--VRACITHLRLFT 124

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           RK        +T     + +E  +     ++ I +    R+     + ++ +  NP   +
Sbjct: 125 RK-KSLPVTLLTKDFCINFLEYLRDHLRGNTPIGYFKKFRMCINKCIEKKLMTSNPTDGI 183

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              +         + +++Q+        ++ + AF F  Y GLR  D  +   + +  + 
Sbjct: 184 RLMQFDEVTKAILSLKEIQKLAITPCPNNEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSS 243

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---AKAT 278
             +   +       +     + L        +     N++       +S   +       
Sbjct: 244 NRLTILQQKVQSHSKNAILHLNLNHTAIKLLQRHKGINEELVFGLPSYSYTLRILNKWVK 303

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +A ++K  + H  R    T     GA      +  G  T    E Y    D ++   K  
Sbjct: 304 RANIHKHITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELK--QKAV 361

Query: 337 RRISSVV 343
             +  ++
Sbjct: 362 DSLPDII 368


>gi|94496736|ref|ZP_01303311.1| phage integrase [Sphingomonas sp. SKA58]
 gi|94423749|gb|EAT08775.1| phage integrase [Sphingomonas sp. SKA58]
          Length = 433

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 102/368 (27%), Gaps = 45/368 (12%)

Query: 24  YFRKGHG--RRIRLPYPHESTFIPAYMSAL-----TGSTPKREYINSPRKKPTTLKWLIS 76
            +R   G  RR+ L      T   A   A                    ++   +  + +
Sbjct: 49  QYRNIEGIKRRLNLGRYGVLTIEQARNQAKIKLGAVARGEDPAKEVYEARRDMNVAEMCN 108

Query: 77  EYRKSAHWGSL--------AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127
            Y   A  G +          +S    ES     I    G    R +T   I       K
Sbjct: 109 WYLVEARAGRILGRKNLPIKASSLDKDESRIKTHIKPLLGKRIVRHLTPSDIEQMQSDVK 168

Query: 128 HT-----------------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170
                              PS+A   + +++ +   A  +  +A +P    ++   + + 
Sbjct: 169 EGKTAKPRGPGRGGRATGGPSAASGCVGTIQAIIGHAKHKGLLAKHPTEGAKKLAGRKKT 228

Query: 171 IR-----PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223
            R              +     E      A   LL +G R  +        +       +
Sbjct: 229 RRLSVIEIEMMGKAMAYAERNGENPVALGALRALLLTGYRREEGQAMQRAWVSTAGGYVA 288

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
               K G  I    P     + +   I        ++      T  S   +     A + 
Sbjct: 289 FPDTKGGAQIRAIGPAAVRVIESQPEIVGNPHTFPSELGSGAFTAVSACLQRVCKLARIE 348

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI----KNSRR 338
             + H +R    +++ D G +   + A  G  + +  + Y    + ++L +        R
Sbjct: 349 GVTPHTLRHTFGSVAGDLGFSELTIRAMLGHASQNVTQDYIHIDEALKLAVRRTSDEIER 408

Query: 339 ISSVVDSD 346
           + ++  + 
Sbjct: 409 LLALGAAR 416


>gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 73/272 (26%), Gaps = 25/272 (9%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHT 129
            WLI E         LA  + I +E+   + +          +T   + +    ES++ +
Sbjct: 114 GWLIDE-------RGLAQMTVIRYENLARRFLTLYPLDAGVAVTGAEVVAFLLQESQRVS 166

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAI------NPCLSVERPKRKTEGIRPWTKEDMQQFK 183
             SA   +  +R L ++   +            P                  ++ +    
Sbjct: 167 VGSAKGRVAELRSLLRFLFVRGLTPRLLTTAVPPVAGWRDTGIPKALPAGHVQQLLDHCD 226

Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM- 242
                  +       +   GLR  +  R  +  +      I      +          + 
Sbjct: 227 RSDPVQVRDYAILMMVARLGLRSIEVARMQLDDIDWRTGRIILHGKASRKDGMPLPEEVG 286

Query: 243 --------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                    +   T +          ++ +     S   +    +AG+ +  AH +R   
Sbjct: 287 AALADYLTDIRPRTQLRAVFVSCKAPRRAIRPDLVSDVTRRACDRAGLPRVGAHRLRHTL 346

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325
           AT     G    ++      + +     Y K 
Sbjct: 347 ATEMLQRGVKLADIGQVLRHRDLATTALYAKV 378


>gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +       ++ +     +  ++        K     AG+      H +R   AT 
Sbjct: 74  WAWQFVFPSAQSCRDPYTGRWVRFHVHEKTLQRTVKMATRLAGIAKPVGCHTLRHAFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             +AG     +    G K V+    YT   
Sbjct: 134 LLEAGHNIRVVQELMGHKDVETTMIYTHVL 163


>gi|83591694|ref|YP_425446.1| phage integrase [Rhodospirillum rubrum ATCC 11170]
 gi|83574608|gb|ABC21159.1| Phage integrase [Rhodospirillum rubrum ATCC 11170]
          Length = 402

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 111/378 (29%), Gaps = 43/378 (11%)

Query: 4   SLRLPPFVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGST--- 55
            +     +    T  G I + +    HGR+  +          T   A            
Sbjct: 18  KVNDRDGLYVAVTVSGSISFRYNYAIHGRQETITFGRYGVGGITLAEARERLGEAKKMIA 77

Query: 56  ------PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGD 108
                  ++    +  K   T      ++ +      +A ++R    S YF ++  K G+
Sbjct: 78  AGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ---MAESTRDMRRSIYFRELKSKFGN 134

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
               +IT + +R+  ++      P++A+     +  +++WA+ +     NP   V     
Sbjct: 135 QKLVEITHEDLRALTDAIVERGAPATAVHVREVVFQVYRWAIERGQKVENPAELVRPTTI 194

Query: 167 KTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
                R       +    +            R A + LL + +R S+  +A    +  + 
Sbjct: 195 ARFEPRDRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLLTMVRKSELTKATWSEVNFSE 254

Query: 222 F-SIKTQKTGTIITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIW 272
                 ++        L     + L +                   +    M++   +  
Sbjct: 255 ALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRYDSDAPMSSATLNQV 314

Query: 273 F---KAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                  A K G        H +R+ ++T+  +AG     +      +       Y K  
Sbjct: 315 LTLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAGYNTDWIEKCLAHEQRGVRAVYNKAE 374

Query: 327 ---DRIRLGIKNSRRISS 341
               R+ +    +  I  
Sbjct: 375 YRDQRVEMMQDWADMIDE 392


>gi|307245328|ref|ZP_07527416.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254281|ref|ZP_07536121.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258741|ref|ZP_07540473.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853669|gb|EFM85886.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862760|gb|EFM94714.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867092|gb|EFM98948.1| Predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 311

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 90/312 (28%), Gaps = 29/312 (9%)

Query: 29  HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88
            G+   L           Y + L  +    E+             +   Y         A
Sbjct: 3   DGKEKSLGT-------NKYEAVLEAAKLNFEFQKKGEVVL--FIDVAKRYEVEVVPTKKA 53

Query: 89  VNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146
            N+R S       + +  GD      +I  +HI+  ++ RK TP+ A   +     +  W
Sbjct: 54  KNTRQSNLQAIGWLCKFFGDPPIQLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTI--W 111

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206
              +E+         +  K+     R    ED    K +     +     E     G R 
Sbjct: 112 NSAREWGYTTLSSPSQGVKKFPTKYREIYVEDYILEKIYEFADERMADIIETAYLLGQRP 171

Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM-N 265
            D C     H+ N I  I  QKTG  +  E+     ++L         F   N   +   
Sbjct: 172 IDICNIHRSHIYNGILHITQQKTGKKVRFEISGRLKEILDRRLQDGSDFIFTNKWGRKLE 231

Query: 266 ATQFSIWFKAKATKA------------GVNKSAHGVRKFSATISADAGATAHELMATYGW 313
                  FK    KA             V      +R  +AT      AT  +     G 
Sbjct: 232 RRILGNHFKEIREKAMNAYPELADEIGKVQMR--DMRAKAATD-ISLTATDEQAQKQLGH 288

Query: 314 KTVDQAETYTKG 325
            +    + Y + 
Sbjct: 289 TSKRMTQHYIRK 300


>gi|218705077|ref|YP_002412596.1| putative defective integrase; Qin prophage [Escherichia coli
           UMN026]
 gi|293405080|ref|ZP_06649072.1| int protein [Escherichia coli FVEC1412]
 gi|298380726|ref|ZP_06990325.1| lambdoid prophage Qin defective integrase [Escherichia coli
           FVEC1302]
 gi|300901630|ref|ZP_07119692.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
 gi|218432174|emb|CAR13062.1| putative defective integrase; Qin prophage [Escherichia coli
           UMN026]
 gi|291427288|gb|EFF00315.1| int protein [Escherichia coli FVEC1412]
 gi|298278168|gb|EFI19682.1| lambdoid prophage Qin defective integrase [Escherichia coli
           FVEC1302]
 gi|300354991|gb|EFJ70861.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 198-1]
          Length = 431

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 109/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 6   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 62

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 63  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 121

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 122 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 181

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+  NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 182 GYLVDNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 240

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 241 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 300

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 301 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 360

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 361 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 411


>gi|197302720|ref|ZP_03167774.1| hypothetical protein RUMLAC_01450 [Ruminococcus lactaris ATCC
           29176]
 gi|197298302|gb|EDY32848.1| hypothetical protein RUMLAC_01450 [Ruminococcus lactaris ATCC
           29176]
          Length = 396

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 107/344 (31%), Gaps = 43/344 (12%)

Query: 14  ERTRHGKIIYY----FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           ++  +G   +     +    G++I   R  +  +      Y   +  ST +     + +K
Sbjct: 7   KKADNGTYYFRANLGYNPITGKQIQKYRSGFRTKKEAKEEYSKLVLASTEEL----TTKK 62

Query: 67  KPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              + +  I E Y        +  ++ ++  +   +        +  +I   H+++    
Sbjct: 63  DGVSFQQFIEETYLPWYK-TQVKESTYLNRATTIKKHFSYFYKMETDEIEPIHVQNWQLK 121

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +P+        + + F  A+       NP   +   K K   +  WT E+ Q+  
Sbjct: 122 LAKDFSPNYIRIVQGMLSIAFDRAIVLGIAKKNPSRMIGNIKSKKTKVDFWTLEEFQKVI 181

Query: 184 SFWSEGSQP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIF 222
           S   +       L   F L   +G+R  ++       +                   +  
Sbjct: 182 SLLCKKDYYEHYLFISFWLLFMTGMRIGEASALHWSDIDFETGLLSITKTLYYRTMTDYK 241

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAK 276
            ++ +   +I T+ +    +  L      ++    +       +    + T      +  
Sbjct: 242 FVEPKTQASIRTIYIDSDTLNELKAWQSVQQQVLPDCPLVLSYNGTPTSKTTLPRALEKL 301

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  AGV++   H +R   A++    G     +    G + +   
Sbjct: 302 SNLAGVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


>gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium]
 gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 2/129 (1%)

Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259
           L++ L                   ++           +   +  +     +  +      
Sbjct: 35  LWTHLARVKLLHQKDAANGYGAVYLQNALDRKYPAAPMEWMWQYVFPAATLSVDPVTRQV 94

Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317
            +  ++ +      +  +  +G+NK    H +R   AT   ++G+    +    G K V 
Sbjct: 95  RRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELLGHKHVQ 154

Query: 318 QAETYTKGA 326
               YT   
Sbjct: 155 TTMIYTHVL 163


>gi|39935273|ref|NP_947549.1| integrase [Rhodopseudomonas palustris CGA009]
 gi|39649125|emb|CAE27645.1| integrase [Rhodopseudomonas palustris CGA009]
          Length = 418

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 105/369 (28%), Gaps = 44/369 (11%)

Query: 10  FVTKERTRHGKIIYYFRKG-HGRRIRLP----YPHESTFIPAYMSALTGSTP-------- 56
            +  + +  G + +      HGRR  L      P   +   A  + +             
Sbjct: 24  GLYVQVSTSGTLTFRLDYRLHGRRETLTLGKYGPSGLSLARAREATIDAKRAVFEGRSPA 83

Query: 57  -KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKI 114
            +++      K+  +       +        +A ++R    S F++ ++    +    +I
Sbjct: 84  QEKQRDKRRIKEAKSFGEFGERWL---VKAPMADSTRAMRRSIFERELLPVWKNRLLTEI 140

Query: 115 TTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
           T   +R+          P++AI     ++ ++ +A+       NP   V      T   +
Sbjct: 141 TPDDLRAHCGKIVDRGAPATAIHVRDILKQIYGFAILHGEKVANPADDVGPASIATFVPK 200

Query: 173 PWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
             +    +                 RL     L + +R S+   A    +          
Sbjct: 201 DRSLSPTEIRVMLKQLDHVATLPTIRLGMRLFLLTMVRKSELQDAVWDEVDFENAVWTIP 260

Query: 228 KTGTIITVELP----DGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKA 275
           K     +           + ++                 +  +    +    + +     
Sbjct: 261 KERMKRSKAHNVYLSQQCLDIMIALKTCAGNSRYLLPSRYDADAPMSRATFNRVTYAVVE 320

Query: 276 KATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA---DR 328
           +A K G+     + H +R+  +T+  + G  +  +      +    +   Y K      R
Sbjct: 321 RAQKEGLPLEPFTVHDLRRTGSTLLNELGFNSDWIEKCLAHEDGRSSRGVYNKAEYEHQR 380

Query: 329 IRLGIKNSR 337
             +  + S 
Sbjct: 381 RHMMQEWSD 389


>gi|71042119|pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
 gi|71042120|pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer
           Bound To A Coc' Core Site
          Length = 283

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 17/262 (6%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127
           TL   +  Y K      +   + I++ S    I R   D     ITTK I + +     +
Sbjct: 2   TLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDE 61

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
              +SA    +++   F+ A+ + ++  N   +    K K    R    E ++ +++  S
Sbjct: 62  GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAES 121

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--- 244
                RLA E  + +G R  D C      + +    ++  KTG  I +        L   
Sbjct: 122 SPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGIS 181

Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293
                      +G ET   +  ++ +++   S +F      +G+       + H +R  S
Sbjct: 182 XKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLS 241

Query: 294 ATISADAGATAHELMATYGWKT 315
           A    +   +        G K+
Sbjct: 242 A-RLYEKQISDKFAQHLLGHKS 262


>gi|222151790|ref|YP_002560948.1| integrase [Macrococcus caseolyticus JCSC5402]
 gi|222120917|dbj|BAH18252.1| integrase [Macrococcus caseolyticus JCSC5402]
          Length = 352

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 92/340 (27%), Gaps = 32/340 (9%)

Query: 16  TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75
           T+H  +  Y  +  G+R R           A   AL   +   +      K P       
Sbjct: 4   TKHNNVWQYDFRYEGKRYRKRGFKTK--REAQQKALEVKSNLSKGFVIDEKTP--FVDYY 59

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----- 130
           ++Y +    G ++      ++S       K G     K++    +  +            
Sbjct: 60  NKYVELNKEGKVSEKHLQRYKSSIKVFEEKFGRIHISKVSKMMYQELLNEYAEGKFLDGR 119

Query: 131 ------SSAIQFLTSMR-----VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
                 SS  +    +R      L +  + ++          +  K   +      +   
Sbjct: 120 EEGRATSSVEKLNGCLREAIREALHEGIIFKDPTYRASVKGKKSAKLAKDKFLTLEQFKE 179

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-------VQHLQNNIFSIKTQKTGTI 232
            +  S   +     L    L+ +G R  +               L       K+      
Sbjct: 180 LKKFSMRRKELS-YLMIYLLVVTGARFKEVQHVKLTDFNKNENTLHIRGTKTKSADRVIQ 238

Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVR 290
           ++ +  D  +      PI       +     ++    S  FK      +AG +K+ H +R
Sbjct: 239 LSQKDIDYVLGYAKDKPINISGHLFDTGYNLISHNAVSRLFKDFLIEQRAG-HKTLHSIR 297

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329
               +   D G   + +    G   +   +  Y       
Sbjct: 298 HTHVSWLIDLGLDIYYISQRVGHANITITQGIYGHLFPER 337


>gi|329312769|gb|AEB87182.1| Transposase B [Staphylococcus aureus subsp. aureus T0131]
          Length = 609

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 33/290 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGV-- 123
            K L+  Y K       + +          +                ++T   I + +  
Sbjct: 197 FKQLVKRYCK-LRLNMDSFSYVSDIAQKLKEFFNFLDIKFKHVQRVHQLTRVEIEAYLSE 255

Query: 124 -ESRKHTPSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                  PS+    ++ +  LF     +  + V     +  E   +       +  E + 
Sbjct: 256 LNMMGIKPSTITGRISILEGLFSTLHRLEWDDVPSKLLIYPEDYPKIPRAKPRFIDEFVL 315

Query: 181 QFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTII 233
           +  +   +     +A   ++    G+R S+ C      L      +        K     
Sbjct: 316 EQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEH 375

Query: 234 TVELPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282
            V +    + L+ +            E  F   D   +    F       A +  +    
Sbjct: 376 IVPISKEVVLLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKS 435

Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
                  AH  R    T   + G   H +    G ++ +    Y    D 
Sbjct: 436 GEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDE 485


>gi|301047134|ref|ZP_07194231.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
 gi|300300956|gb|EFJ57341.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 185-1]
          Length = 390

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 112/370 (30%), Gaps = 43/370 (11%)

Query: 18  HGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST---------PKREYINS 63
            G + + +    +GRR  L          +   A    +               +     
Sbjct: 4   SGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIK 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
             +   T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R  
Sbjct: 64  KIRGAETFAVHTDSYMKHVI---LADSTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDL 120

Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +        ++A+Q    +  +++ A  + +   NP   ++         R  T    +
Sbjct: 121 CDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEE 180

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGT 231
               F +          ++A + +L + +R  +   A    +    ++        K   
Sbjct: 181 IGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSR 240

Query: 232 IITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
              + LP     +L    +             N ++ ++    +            +   
Sbjct: 241 AHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEH 300

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSR 337
               + H +R+ ++T+  +AG  +  +      +       Y K      R  +  + + 
Sbjct: 301 IQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAEYARQRAYMLQQWAD 360

Query: 338 RISSVVDSDD 347
            I S ++ + 
Sbjct: 361 MIDSWINGEH 370


>gi|153930697|ref|YP_001393320.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958238|gb|ABS45700.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP
           31758]
          Length = 375

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 89/277 (32%), Gaps = 21/277 (7%)

Query: 63  SPRKKPTTLKWLISEYRKSAHW-------GSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115
             R K   L   +  Y     +           VN+   ++     +       D  +  
Sbjct: 2   KTRVKNIPLSKALDIYLDKISFFKKGGMQEHYRVNTIKKYKLS-TLLTNNITTVDIAEYR 60

Query: 116 TKHIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRP 173
            + +++     +  + ++    L  +  LFK  + +  +   NP L V +PK      R 
Sbjct: 61  DERLKTVKPNGKTISSNTVRLELALLSHLFKVGIVEWGIARENPVLLVRKPKASEGRNRR 120

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF--SIKTQKT 229
               + ++   +  E S    A    L   + +R  +      +++        +   K 
Sbjct: 121 VQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQWEYVDLRQGVAHLPETKN 180

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288
           GT   V L     ++L            +       +  F   ++    K+G+ +   H 
Sbjct: 181 GTSRDVPLSAKAREILRKCSPKSSGSVFSY-----TSNGFKSAWRCIIIKSGIKDLHFHD 235

Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324
           +R    +   ++G     E+ A  G K++   + YT 
Sbjct: 236 LRHEGVSRFVESGRLNIMEVAAISGHKSLSMLKRYTH 272


>gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247]
 gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247]
          Length = 324

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 77/313 (24%), Gaps = 50/313 (15%)

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKI------------TT 116
            L+ +Y +         N+ ++                       +              
Sbjct: 7   ELVDDYLE-LVATRARPNTVLATAYDLKVFFEVVDREPEKVSVDDVLDFLKQQRQPRRGA 65

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVER 163
             +R     +  +  +  + L+S+  L+++   +  V  NP                V  
Sbjct: 66  TVVRIEDGEQGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPGRAVRGVPL 125

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223
            +      R         F        + R     +L  GLR  +    G+  L      
Sbjct: 126 IRAPRTLPRVLDPAQADAF-VASLRTDRDRAMVAAMLLGGLRRCEVLGLGLNDLNPGERR 184

Query: 224 IKT------QKTGTIITVELPDGFMKLLAMTPIGKETFFI-------NNDKQKMNATQFS 270
           +         +    I+          L                       Q ++A    
Sbjct: 185 VFIAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFVVLKGPRRGQPLSAAGLD 244

Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-- 327
                   +AG+   + H +R    T   +AG     + +  G ++++    Y   A+  
Sbjct: 245 EIIAGARRRAGIEQLTCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDW 304

Query: 328 ---RIRLGIKNSR 337
                R  ++   
Sbjct: 305 LASEYRRAMEAID 317


>gi|226325002|ref|ZP_03800520.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|240145110|ref|ZP_04743711.1| transposase [Roseburia intestinalis L1-82]
 gi|225206350|gb|EEG88704.1| hypothetical protein COPCOM_02794 [Coprococcus comes ATCC 27758]
 gi|257202783|gb|EEV01068.1| transposase [Roseburia intestinalis L1-82]
          Length = 396

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 100/378 (26%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K    +GK  + +         +P           +S        ++ +N      
Sbjct: 25  RYVYKYTDIYGKPQFIYSWK-----LVPTDKTPAGKRDDISLREKEAQIKKDLNDSIDTV 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
               T+  L  +  K++   ++   +    +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYEK--KNSQRKNIKRATEKGRQYLMNALKNDPLGMRAIDTVKQSDAKEWAI 137

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                     +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 138 RMSEKGYAYKTIDNYKRSLKASFYMAIQDDCIRKNPFEFKLSDVLEDDTEQKVILTPEQE 197

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++  +F  +    S+       LL +GLR S+ C         N       +        
Sbjct: 198 ERLLAFMEKDKIYSKYYDEVVLLLETGLRISEFCGLTTHIDMQNKILNIDHQLLKDSEIG 257

Query: 232 ---------------IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQ 268
                           +T        ++L                  F+N +     A  
Sbjct: 258 YYIETPKTKNGKRELPLTERAYQAIQRILKNRGKAQPLIVGGYSNFLFLNREGLPKVAGN 317

Query: 269 FSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +    +    K          N + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YEGMVRGLIKKYNKYHTDKLPNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|160893591|ref|ZP_02074375.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
 gi|156864576|gb|EDO58007.1| hypothetical protein CLOL250_01145 [Clostridium sp. L2-50]
          Length = 658

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 81/289 (28%), Gaps = 25/289 (8%)

Query: 72  KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGV---ESR 126
           + L+ EY K     G LA+ +  +   Y  + +          +IT + I       +  
Sbjct: 348 RELLQEYMKYQVGIGDLALGNIRNQLCYIKKFLVYFNTLESICEITEEQIAEYFKLLQEE 407

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
           +    +  + +  +   F +   + ++           ++        + ++ +  +   
Sbjct: 408 EIKAETVNRQIFDIHRFFVYLNAKGHIKRIIFDPNYYIQKVFPYHHDRSVQEDEYMEILQ 467

Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243
                    RL F  L  +GLR S+ C         +      +     +  E       
Sbjct: 468 KLKFFPEVQRLIFLNLWATGLRISEVCTLKGGAYYWDGEDAWIKVYQIKMKTEKMIPISL 527

Query: 244 LLAMTPIGKETFFINNDKQK---------MNATQFSIWFKAKATKAGVNKS-----AHGV 289
           +L                                F   FKA   K G++ S      H  
Sbjct: 528 VLYQIMKIYIKKHHIKPTDFLFKSKDGGAYRTGTFVKGFKANCKKYGIHISGETFKTHDY 587

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338
           R   A+   D G +   +    G    +  + Y     +    I+ + +
Sbjct: 588 RHTLASSFYDEGVSIQTIRDYLGHNNENMTKQYIDYMPKR---IEQANK 633


>gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1]
 gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1]
          Length = 318

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 82/274 (29%), Gaps = 24/274 (8%)

Query: 75  ISEYRKSAH-WGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVES-RKHT 129
           +  Y         L+  +R       +Q++RK    G  +   +    +R  +      +
Sbjct: 27  LRRYDDHLRDVRGLSAGTRRDRCRIVEQLLRKKFADGVVNMATLRAVDVRRFIARQLGDS 86

Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSF 185
           PS  +A Q  +++R   ++              +  P +       R    + +Q+    
Sbjct: 87  PSHSAAAQLASALRSYLRYRTICGDSVAGLNAVISSPVQWKLASLPRALRPDQVQRLLGA 146

Query: 186 WSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242
           +  G  PR         L  GLR  +     ++ +     ++  + T +     LP    
Sbjct: 147 FPYGRWPRRGYAIVRCALDMGLRAGEIANLLIEDIDWREGTVTLKGTKSRRQDVLPLPMA 206

Query: 243 ------KLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290
                   L                  +    +         +    + G+  S +H +R
Sbjct: 207 TGQALADYLQHERPAISSRAIFLCRRGSRDIPITTDAVQNVIRRACRRVGLPDSGSHLLR 266

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324
              A    + G++  E+      ++++    Y K
Sbjct: 267 HTLACRLVENGSSLKEVADVLRHRSLETTRIYAK 300


>gi|147675645|ref|YP_001218546.1| phage integrase family site specific recombinase [Vibrio cholerae
           O395]
 gi|262168003|ref|ZP_06035702.1| site-specific recombinase phage integrase family [Vibrio cholerae
           RC27]
 gi|146317528|gb|ABQ22067.1| site-specific recombinase, phage integrase family [Vibrio cholerae
           O395]
 gi|227012132|gb|ACP08342.1| site-specific recombinase, phage integrase family [Vibrio cholerae
           O395]
 gi|262023536|gb|EEY42238.1| site-specific recombinase phage integrase family [Vibrio cholerae
           RC27]
          Length = 411

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/350 (11%), Positives = 93/350 (26%), Gaps = 37/350 (10%)

Query: 19  GKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKREY--INSPRK 66
           G + + FR    G  +R+ L    + + + A   A         G  PK +   I     
Sbjct: 37  GNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWLAEGHDPKLQRSVIRQETL 96

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125
           KP +++  +  +       + A N+      +   I    G     +  T H     +  
Sbjct: 97  KPVSVQDALEYWLVEYAESNRA-NADKHRSQFQKHIYPYIGALPLAQTETHHWIECFDRV 155

Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----- 173
                  ++  P +A   L + +   ++   + Y        +       +  +      
Sbjct: 156 RKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRVLDDLTVNDVGKKQRKKDRVLT 215

Query: 174 ---WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
               +                  L    +++ G R  +   +  +            K  
Sbjct: 216 AQELSDLWNAVQTPNKFLPYYCHLVKFLVVF-GARTQEVRLSKWKEWDFEALIWTVPKEH 274

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVN--KS 285
           +    ++       L    +  +           ++ +    S   +    + G     +
Sbjct: 275 SKTDEKIIRPIPDELVPWLLQLKEDSDKETLILGEEKSPETVSQQGRFFWQRLGHEEAWT 334

Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGI 333
            H +R+  AT   + G   + +    G         Y +       R  +
Sbjct: 335 LHDIRRTLATRLNELGVAPYVVEQLLGHSLGGVMAIYNRSQYLPEKREAL 384


>gi|256422263|ref|YP_003122916.1| integrase family protein [Chitinophaga pinensis DSM 2588]
 gi|256037171|gb|ACU60715.1| integrase family protein [Chitinophaga pinensis DSM 2588]
          Length = 437

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 94/317 (29%), Gaps = 29/317 (9%)

Query: 59  EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYR 112
           +  N       TL+ L+ +Y +      L   +  ++ S F  +          GD    
Sbjct: 105 KQANGSVAPRLTLRTLMQKY-EEVEGKRLKKGTWKNYTSTFAYLDGFLKKEIPGGDIRVD 163

Query: 113 KITTKHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
           K+T + + S        P            A     +MR++  WAV +E +   P  S +
Sbjct: 164 KLTKEFLTSFKTYIPKNPIKEGFVCQGNGLAKHIERTMRMV-NWAVDEELLDRPPVGSYK 222

Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQNN 220
             K+K + I    +E  +     + +     +     F  Y+GL   D      Q +   
Sbjct: 223 VKKKKPKKIFLDEEELARMEAQVFLDEEVAYVHDLAIFACYTGLAYCDVMNVIDQDISIL 282

Query: 221 IFSIKTQKTGTIITVELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276
             +                  +K    +L      ++          ++  Q +   K  
Sbjct: 283 FGATWLSNERIKSEGYFKVPLLKKPLSILNKYRYARDRGKRKEIFPYISNQQVNRAIKVI 342

Query: 277 ATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI--RL 331
              + ++K  + H +R    T            LM   G   +     Y +  D    + 
Sbjct: 343 LQISRIHKKITFHKMRHTFGTTVTLANNMPIESLMKMMGHSKISSTLEYAQVVDSKLMKD 402

Query: 332 GIKNSRRISSVVDSDDP 348
               S R+   V    P
Sbjct: 403 MQGLSERLEKPVHIRRP 419


>gi|227821734|ref|YP_002825704.1| DNA integration/recombination/invertion protein [Sinorhizobium
           fredii NGR234]
 gi|227340733|gb|ACP24951.1| DNA integration/recombination/invertion protein [Sinorhizobium
           fredii NGR234]
          Length = 429

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/382 (12%), Positives = 104/382 (27%), Gaps = 54/382 (14%)

Query: 10  FVTKERTRHGKIIY--YFRKGHGRR-IRLPYPHESTFIPAYMSAL-------TGSTPKRE 59
            +       G   +   +R     R + L      +   A   A         G  P  E
Sbjct: 31  GLYLIVQTTGVKSWAVRYRHAGKPRKMTLGGFPAISLSDAREEARKALRMVSEGRDPATE 90

Query: 60  YINSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115
                 K+P     +  L+ E+           +     +   ++ +  K      + +T
Sbjct: 91  KAEQEPKRPAHMDLMPALLDEFVTRHVAVKNRPSYVRESKRIVEKNLKPKWKQKLVKTVT 150

Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173
            + +   ++    + +P  A +    +   F WA+ ++ V  +P +S++ P  +    R 
Sbjct: 151 KRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAMERDIVDASPVVSIKAPSEEKTRDRI 210

Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
            T E+++       + + P      LL    +        +        + +        
Sbjct: 211 LTDEEIRFLWLAAEKLAYPFGPVVKLLLLTAQRRTEVSDALWDELELEGNNQLWVISVDR 270

Query: 234 TVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--- 280
                + F+ L          L      ++                   F    T+    
Sbjct: 271 AKNKKEHFVPLTASALEIIEGLPKIKPAEDEKAKPIYLFTTTGKTPVSGFSKAKTQLDGE 330

Query: 281 -----------------GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317
                            G+     + H +R+ +A+  A      H + A    ++     
Sbjct: 331 MLAIARKEAEERGEDPEGISIEPWTYHDLRRTAASGMARLSVPVHIVEAVLNHRSGSIKG 390

Query: 318 QAETYTK--GADRIRLGIKNSR 337
            A  Y +   A+  R  +    
Sbjct: 391 VAAVYNRYDYAEEKRAALTAWA 412


>gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium]
          Length = 160

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 71  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFLRAFKRAVEQAGITKPATPHTLRHSFA 130

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T    +G     +    G   V     YT 
Sbjct: 131 TALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160


>gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1]
          Length = 329

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 77/270 (28%), Gaps = 19/270 (7%)

Query: 90  NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKW 146
           ++    E     +       +  +     I S VE R  +     S    ++ +    K+
Sbjct: 20  STAERRERRIRMLENHI---NVNEPDIGEIYSYVEMRLRSGLKKKSVRLEISDLSHWCKY 76

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGL 204
             +       P L  E             +   +   S   + +  R      +   +G+
Sbjct: 77  IGKPISKDDLPVLKKEPDPDPFIPEPEDIQRMREFCISRKDKYTWARNLCMMDMLIATGM 136

Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF-----INN 259
           R  +   A ++  +N+   I+++K     TV LP      +                   
Sbjct: 137 RAGELIHANLEDYKNSTLYIRSEKGEKDRTVPLPGKLTSEVDEYIEKYRYHSDSRALFTT 196

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
              + N  +     K     +GV     H  R + AT     G     +    G   ++ 
Sbjct: 197 RTGRYNYNKLRQLIKYIGVHSGVPDIHPHSFRHYYATTLVRLGVDIRRVQILVGHARIET 256

Query: 319 AETYTKGADRI-----RLGIKNSRRISSVV 343
              YT    +      +  ++   R++  +
Sbjct: 257 TTRYTHLTQKEVGEAVKESVEALFRLNRQM 286


>gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
             G+  +        +       +  ++         A   ++G+    S H  R   AT
Sbjct: 73  HWGWQYVFPAPKRSVDPRTRKVRRHHLSENVIQKAVSAAIQRSGIAKPGSCHTFRHSFAT 132

Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326
              +AG     +    G K V     YT   
Sbjct: 133 HLLEAGYDIRTVQELLGHKDVTTTMIYTHVL 163


>gi|13095659|ref|NP_076780.1| integrase [Lactococcus phage bIL311]
 gi|15673930|ref|NP_268105.1| integrase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724989|gb|AAK06046.1|AE006425_3 prophage ps3 protein 16, integrase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831081|gb|AAK08433.1|AF323672_1 integrase [Lactococcus phage bIL311]
          Length = 399

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/383 (12%), Positives = 107/383 (27%), Gaps = 63/383 (16%)

Query: 10  FVTKERTRHGKIIYYFRKG-------HGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62
            + + +T+ G++ Y  R          G++I+      +            +  K+    
Sbjct: 5   NIKEYKTKAGEVRYILRGAYIGTDVLTGKQIKTDIRGRTKTGVKNELERLKNNFKKNGNT 64

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121
             ++   T + +   + +        + S     S  D   +   G+    KITT  I+ 
Sbjct: 65  KGKESLETFEEVAESFFELYKLQR-KIGSIDQMRSNLDNYTLPAFGNKRISKITTAQIQQ 123

Query: 122 GVESRKHTPSS------------AIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            V     + ++            A ++      +  +F+ A+    +  NPC SV  P+ 
Sbjct: 124 QVIKWGKSAAAPLNGRQKRTTGQAKRYKLQFNIINRIFQHALSLGIIENNPCQSVIVPQV 183

Query: 167 KTEGIRPWTKEDMQQFKSF-----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           K E  +   K   +   +                   +     L+ SGLR  ++      
Sbjct: 184 KVEQAKKEIKFYKKSELAKLFNYLESLKSGQWSNEYFKALLRLLVASGLRIGEAMALSWS 243

Query: 216 HLQNNIFSIKTQKTGTIITV--------------------------ELPDGFMKLLAMTP 249
            +     ++   KT                                         + +  
Sbjct: 244 DINFQNQTVSVSKTTVRRFQIQDTPKSNKSNRIISIDDKAIYVLKSWYFFQKKHFMKLGN 303

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308
             +   F   +   M+              A +   S HG R+  A++  +A  +   + 
Sbjct: 304 PQQNLVFPKIEGGVMDYHNLIYKLNNIIKNAELPLLSFHGFRRSHASLCLNAEMSYKVIQ 363

Query: 309 ATYGWKTVD-QAETYTKGADRIR 330
              G   +    + Y+      +
Sbjct: 364 ERLGHSKLQLTMDLYSHLEPEKK 386


>gi|38232807|ref|NP_938574.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199065|emb|CAE48686.1| Putative phage integrase [Corynebacterium diphtheriae]
          Length = 408

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 103/346 (29%), Gaps = 39/346 (11%)

Query: 14  ERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
           +R R  +      +        R                +A            +  K   
Sbjct: 20  KRIRSARWGVGKRWQAVWIENGREATKTFETRDEAE-LWAARAEVGKADGTWITKDKVDI 78

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG------ 122
           TL  L   +  S    +++  ++  + SY++  I  + G      I    I +       
Sbjct: 79  TLSDLWEPWIASKG--NISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLST 136

Query: 123 ----VESRKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
                 S+   P S          +  +   AV    +  NP  + + PK+K    R   
Sbjct: 137 MKGVPASQPPRPLSESAMRKVGLIIHGILDLAVELGVIHQNPIRTGDLPKQKKSERRYL- 195

Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ---------HLQNNIFSIKT 226
           K          +   Q +L    L+ +GLR  ++    V+          ++ ++  +  
Sbjct: 196 KITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPVRGRLMIRRDVDDLGH 255

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKA 280
           + +             ++L +     +    ++             +++ + +K      
Sbjct: 256 EDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWTTSRWRVVWKNLCIWT 315

Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
           G+ +   + +R  +A+I+  AGA    +    G  +     + Y  
Sbjct: 316 GIGDLDTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAH 361


>gi|319401138|gb|EFV89353.1| phage integrase family protein [Staphylococcus epidermidis FRI909]
          Length = 314

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 78/286 (27%), Gaps = 34/286 (11%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127
              L+ EY +       + + +       + ++      D   +TT+ +     ++    
Sbjct: 15  FDKLVDEYIEWYSARRKSSSVKALKTHTNNHLLPYFKSMDVFNMTTQDVMKFQNTKLKEG 74

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187
           H+     +    +  L   A++   +  N    V   + ++     +   +         
Sbjct: 75  HSGEYLKKMHVFLVSLLNHAMKFHDLKQNVASLVGNFEIESNKRLNYWTLEQFNQFYEAL 134

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------------- 232
              Q +L F+ L YSG R  +      + +      I   KT                  
Sbjct: 135 ATQQQKLFFKLLFYSGARKGEIRALTWRDINFEDEFIHINKTDYHGEVTAPKTKSAIRDI 194

Query: 233 -ITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKAT----KAGVN 283
            +   + +     L                    +  + +    WF         +    
Sbjct: 195 YLPTHMMNDIKDYLNWYKENNVYKDDYVLFGTFFKAYSESTIDRWFTTALKVLDEQLPDG 254

Query: 284 KSA-----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
            +      H +R   A++  + GA+   +    G    +  E Y +
Sbjct: 255 HTFPRIVIHELRHSHASMLVNHGASIMVIAQRLGHADSN--EVYNR 298


>gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108]
 gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108]
          Length = 418

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 74/250 (29%), Gaps = 13/250 (5%)

Query: 93  ISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKW 146
             ++ Y  + +  +G  D     +T +  +S     K+            L  +  L   
Sbjct: 132 RYYQQYVSEFLLSNGKKDILLEDVTEEFGKSLKAYLKNAKNLGYGQINHSLRWLNRLMYL 191

Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SG 203
           AV +E + +NP   VE  K+     R  ++++ ++  +      +  LA    ++   +G
Sbjct: 192 AVDKEIIRVNPIEDVEYEKKPAPKHRYISRDEFKKILATPMHDRRMELARHAFIFSSLTG 251

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK 261
           L  +D       H+  N    +  +     T       +  +A   +     T       
Sbjct: 252 LAYADIELLYPHHIGANAEGRRYIRINRRKTKIEAFIPLHPIAEKILTLYNTTNDEQPVF 311

Query: 262 QKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
              +               G     S H  R    T    AG     +    G   +   
Sbjct: 312 PLPSRDALWFEIHELGVAIGKEENLSYHAARHSFGTFLISAGLPIESIAKMMGHSNISTT 371

Query: 320 ETYTKGADRI 329
           + Y +  D  
Sbjct: 372 QGYARITDDK 381


>gi|309775375|ref|ZP_07670379.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916851|gb|EFP62587.1| transposase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 396

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 100/378 (26%), Gaps = 61/378 (16%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK- 67
            +V K    +GK  + +         +P           +S        ++ +N      
Sbjct: 25  RYVYKYTDIYGKPQFVYSWK-----LVPTDKTPAGKRDDISLREKEAQIKKDLNDGIDTV 79

Query: 68  --PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE 124
               T+  L  +  K++   ++   +    +   + +     G      +     +    
Sbjct: 80  GGKMTVCQLYDK--KNSQRKNIKRATEKGRQYLMNALKNDPLGMRAIDTVKQSDAKEWAI 137

Query: 125 SRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
                     +   +  S++  F  A++ + +  NP      +  +  TE     T E  
Sbjct: 138 RMSEKGYAYKTIDNYKRSLKASFYMAIQDDCIRKNPFEFKLSDVLEDDTEQKVILTPEQE 197

Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----- 231
           ++  +F  +    S+       LL +GLR S+ C         N       +        
Sbjct: 198 ERLLAFMEKDKIYSKYYDEVVLLLETGLRISEFCGLTTHIDMQNRILNIDHQLLKDSEIG 257

Query: 232 ---------------IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQ 268
                           +T        ++L                  F+N +     A  
Sbjct: 258 YYIETPKTKNGKRELPLTERAYQAIQRILKSRGKAQPLIVGGYSNFLFLNREGLPKVAGN 317

Query: 269 FSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
           +    +    K          N + H  R    T  A+ G   + L    G   +     
Sbjct: 318 YEGMVRGLIKKYNKYHTDKLPNITPHSFRHTYCTNMANRGMNPNTLQYLMGHANITMTLG 377

Query: 322 Y-------TKGADRIRLG 332
           Y       +  A+  RL 
Sbjct: 378 YYAHGTFQSAKAELERLA 395


>gi|284922173|emb|CBG35255.1| integrase [Escherichia coli 042]
          Length = 414

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 98/349 (28%), Gaps = 32/349 (9%)

Query: 9   PFVTKERTRHGKIIY---YFRKGHGRR--IRLPYPHESTFIPAYMSALT----------- 52
             +       G  ++   Y+R  + +R  I L    E +   A                 
Sbjct: 29  GGLFLVIKPSGSKLWRFNYYRPSNKKRTIISLGSLDEVSLADARKRRSEYRTLIASGIDP 88

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDY 111
               +++     R++  T + + + + +     +LA N+           +    G+   
Sbjct: 89  QHHERQKREAEARRQGNTFENVAASWYEMKKNQNLAHNTIKDIWRSLEKYVFPYIGNTPI 148

Query: 112 RKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169
             +T +     +   K   +  +  + L  +  +  +A     + IN   +V +      
Sbjct: 149 DTLTARRFVEILTPIKTRGNLETLKRVLQRINEVMDFAANSGLIDINTAANVRKAFPSPT 208

Query: 170 GIRPWTKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224
                T             S  S   Q RL  E+ L +  R +++  A  + +  +  + 
Sbjct: 209 KKHMPTIRPEQLPQLMHDLSIASIERQTRLLIEWQLLTATRPAEASAARWEEINLDAATW 268

Query: 225 KTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATK 279
                   +    +     + +A+    K                          A   +
Sbjct: 269 TIPAGRMKMRRDHVIPLCAQAMAVLEAMKPISARREHVFPSLKNPVQPMSSQTANAALRR 328

Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKG 325
            G       HG+R   +T + + G     + A       ++    Y + 
Sbjct: 329 MGYTGVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRS 377


>gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12]
 gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14]
 gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3]
 gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12]
 gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135]
 gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855]
 gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM
           18228]
 gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14]
 gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3]
 gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12]
 gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp.
           HGB5]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 17/256 (6%)

Query: 90  NSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---- 139
            +  +     + +           D    ++T   I+                + +    
Sbjct: 131 ATYRARVRARNHVAAFIKSFYRRSDMSMLELTPDFIKEFAAYLSTEAGLRNGSIWANCMW 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ +   A     +  NP +         +     T+++++   +     S+    R  F
Sbjct: 191 LKGVVMKAHYNGLIPRNPFIQF-HISPNVKEREYLTEDELKAVMTHEFADSKLAYIRDIF 249

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETF 255
            F  ++ L   D       ++                 V      + + L +    +   
Sbjct: 250 IFASFTALSFVDIQELTNDNIVEVNGEKWILSKRHKTKVAFQVKLLDIPLQIVERYRPMQ 309

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313
             N     +N        K    + G+ KS   H  R   AT++   G     +    G 
Sbjct: 310 KDNRIFPGLNYWSICKPLKRMIRECGITKSISFHCSRHGFATLALSKGMPIESVSRVLGH 369

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K   + 
Sbjct: 370 TNIVTTQLYAKITTQK 385


>gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
 gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142]
          Length = 360

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/321 (9%), Positives = 71/321 (22%), Gaps = 64/321 (19%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRK-------SGDFDYRKI-----------TT 116
           I  Y         + N+  S+                   +     +           T+
Sbjct: 31  IQRYLTFLSGTK-SPNTVESYGYGLKAWWEFLQSKTLNWKEVQLTDLEDFVHWLRVGDTS 89

Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC------------------ 158
             +       K +  S    LT++   +++    + V                       
Sbjct: 90  NIVSMQPVKAKRSERSINLALTAVTTFYEYHDAHKNVDPKKFDRLITTRGNTRRGLLDGI 149

Query: 159 ---LSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                  +   K +  + +      +            + +     L  +G+R  +    
Sbjct: 150 SKSKPTRQKLVKLKEPKKFPGCLTDEQLETLVNSCHRLRDKFLILLLNGTGIRVGELLGL 209

Query: 213 GVQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTP------IGK 252
             + + +        +                  +  EL   +   L             
Sbjct: 210 QHEDIGDGSDYFIHVRKRRHNNEARAKGQERTIPVIPELLQMYNDYLIYEYPEVESNYVF 269

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              +       M A   +  F   + K G+    H  R   AT    AG +   +    G
Sbjct: 270 VNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVYPHLFRHTYATRLLKAGYSPERVKYLLG 329

Query: 313 WKTVDQA-ETYTKGADRIRLG 332
             ++    + Y+       L 
Sbjct: 330 HTSIQTTLDIYSHVISEADLM 350


>gi|298290875|ref|YP_003692814.1| integrase family protein [Starkeya novella DSM 506]
 gi|296927386|gb|ADH88195.1| integrase family protein [Starkeya novella DSM 506]
          Length = 353

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/336 (9%), Positives = 90/336 (26%), Gaps = 29/336 (8%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74
           + + G      R+  G+ +   +          +        +   I    +     + L
Sbjct: 6   KLKSGSWRAQIRRK-GQYVSETFLRRKDAEEWALDMERRIDRQEPAITRKSRDAKRFRDL 64

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131
           ++ +R+      + +    S +     +  + G      +  + +      R      P 
Sbjct: 65  VALHRQDMAEVGVRIG--RSKDFCLTALDERLGALKIADLDRERLIKYGRDRAKEGAGPV 122

Query: 132 SAIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
           +       ++ +            +     +A      +    +  E  R  T++++ + 
Sbjct: 123 TVSMDFGYIKTVLSHAAAVHGVTLSTEPLDLARIALKRLGLIGKGKERDRRPTQDELDRI 182

Query: 183 KSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238
            +   E  +  +       F + + +R  + CR   +        +  +        +  
Sbjct: 183 ITALDENPRQSIPVGRIVRFAVATAMRQEEICRVEWRDFDPRTRMLLIRDRKDPRRKDGN 242

Query: 239 DGFMKLLAMTPIGKETFFINNDKQ---------KMNATQFSIWFKAKATKAGVN-KSAHG 288
              + LL ++            +            N       F+ +     +     H 
Sbjct: 243 HQRIPLLDVSGYDACEIIEEQARCSNGREGRIFPYNGRSVGTAFRRQCQDLKIEELHFHD 302

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
           +R    +   +AG T  ++    G K       YT 
Sbjct: 303 LRHEGTSRLFEAGFTIEQVALVTGHKDWKMLRRYTH 338


>gi|199598924|ref|ZP_03212333.1| Integrase [Lactobacillus rhamnosus HN001]
 gi|199590124|gb|EDY98221.1| Integrase [Lactobacillus rhamnosus HN001]
          Length = 375

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/373 (8%), Positives = 91/373 (24%), Gaps = 49/373 (13%)

Query: 16  TRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71
            R  K  Y           + +                 +     +   ++       TL
Sbjct: 6   KRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAAIEVERQHNRGANLDL---NKITL 62

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP 130
                ++ +    G  +  +   +++   Q++   G+  + + I+    +  +       
Sbjct: 63  IDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKR 122

Query: 131 S--SAIQFLTSMRVLFKWAVRQEYVAINPCLS------VERPKRKTEGIRPWTKEDMQQF 182
           +  +  +    +R +   AV  + +  N   +        +            ++ +   
Sbjct: 123 AKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYC 182

Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235
             F                +G R S+       H+      +   +T             
Sbjct: 183 LEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKRVVHITRTWDHRYGSGFAATK 242

Query: 236 ---------------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274
                                +     + L       K+  F +     +++T  +   +
Sbjct: 243 NKSSVRDIDITRELADLLLRLKKEQQEVYLAQGYRDSKQLLFRSIRHNMLSSTAINKDLR 302

Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD--RI 329
                  ++   + HG+R    +         + +    G       +  Y    +  R 
Sbjct: 303 TIEKTLDISPAITFHGLRHTHVSYLIANHVDINYISRRLGHANTMITQKVYAHLLEDQRK 362

Query: 330 RLGIKNSRRISSV 342
               +  + +S +
Sbjct: 363 EQVSQTLQALSRL 375


>gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470]
 gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470]
          Length = 356

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 102 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 147

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++  +            N     + P            E + + +      ++ R
Sbjct: 148 NITLKNISGV------------NQSAGNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNR 195

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPI 250
           L  + ++++G+R +++ +  ++               K      V L    ++ L    +
Sbjct: 196 LLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWL 255

Query: 251 GKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +   +         N     +         +     AG+ +    AH +R   AT+   
Sbjct: 256 MERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQ 315

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +    G  +++ +  YT   D+ RL    
Sbjct: 316 KRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAA 350


>gi|182679580|ref|YP_001833726.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635463|gb|ACB96237.1| integrase family protein [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 103/373 (27%), Gaps = 71/373 (19%)

Query: 30  GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89
           G+R  L          A+ +    +   RE  ++P     T+    + + ++     L  
Sbjct: 28  GKRH-LKTFDRKKEADAFHA--KANVEIREGTHTPDSASVTVTEAANLWLETGRGRRLES 84

Query: 90  NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-------------HTPSSAIQ 135
           ++  S+E +    ++   G     ++T   IR   +  +              +     +
Sbjct: 85  STLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELEDKLRRGDPAPGAGEGAARSADMIKR 144

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195
            ++S+  +   A  +  V+ N    +   +R++   +   ++  +              A
Sbjct: 145 IVSSLGAMLGDAQERGLVSRNVVRDLRSGRRRSSEKKKDDRQKGKLKVGIDIPTPNEIKA 204

Query: 196 FEFLL------------YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---- 239
           F   L            ++GLR S+        L      +  ++      V  P     
Sbjct: 205 FIGALQGQYRPLLLTATFTGLRASELRGLRWADLDFERRELHVRQRMDKRNVAGPPKSGA 264

Query: 240 ---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284
                             +L          F   N + + +A             AGV  
Sbjct: 265 GERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNGRPEHHANIAQRGLIPAWIAAGVTV 324

Query: 285 ----------------SAHGVRKFSATISADAGAT------AHELMATYGWKTVDQA-ET 321
                             H +R F A+   +  A          +    G  T+    +T
Sbjct: 325 PGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADGGLELPPKLVQERLGHSTIAMTLDT 384

Query: 322 YTKGADRIRLGIK 334
           Y+    R+    +
Sbjct: 385 YSHLFPRVDDADE 397


>gi|154487092|ref|ZP_02028499.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
 gi|154084955|gb|EDN84000.1| hypothetical protein BIFADO_00932 [Bifidobacterium adolescentis
           L2-32]
          Length = 425

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 98/410 (23%), Gaps = 72/410 (17%)

Query: 1   MTPSLRLPPFVTKERTRH---------GKIIYYFRKGHGRRIRLPYPHE---STFIPAYM 48
           MT            RT+          G+  +    G                T   A  
Sbjct: 1   MTAKTTRKTGGRSRRTKGAGGIIHRADGRWEFRREIGRDPATGKRRFIAASGRTKADARE 60

Query: 49  SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
                          P  K   LK     + +     ++   +  +        +   G 
Sbjct: 61  RFGAKVAEMERTGLLPGAKSPYLKDYAERWLEEYRL-NVKPTTYRTRAGRIHACMEVIGC 119

Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
                +T  HIR  +        PS+      S++++   A  +E + ++PC  V+ P+ 
Sbjct: 120 IRLTDLTPDHIRKCMRVLSKRLAPSTLKDHFVSLKMMLDQAELEELIPVDPCRRVKPPRV 179

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR--------------LAFEFLLYSGLRCS----- 207
           +    R  + +  +Q           R              L FE    +G+R       
Sbjct: 180 EPTETRILSPDQPKQLIEAVPNRGAKRRGPALTVDVDESWMLLFELAFAAGMREGERYAL 239

Query: 208 --DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                         N+     Q       V       + L               +    
Sbjct: 240 MPYELEQRDGVPGINVQQQIQQYGKPEDAVIPAWLKAEHLYGILWLTTPKTHAAHRFVPI 299

Query: 266 ATQFSIWFKAKATKAGV----------------------------------NKSAHGVRK 291
           +T       A+  + G+                                    + H  R 
Sbjct: 300 STSLWQRLWARIKRLGIGPRDLIFTNSRGNPVRSSTERYNWNKALKAASLPPVTIHSARH 359

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRRI 339
           ++A+++A A        A  G  ++     YT    A    L  +    +
Sbjct: 360 WTASMTARANMPDDARTAIMGHTSITMTNHYTHRDTASLAALLDQAIPDL 409


>gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4]
 gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4]
          Length = 343

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 81/321 (25%), Gaps = 38/321 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
             G+R+R  +  +          +     K      P  +   L  LI  +         
Sbjct: 23  RSGKRVRKKFTTKGEAAAFECFTMQKVDEKPWMGEKPDHRR--LSHLIELWYSQYGVSLA 80

Query: 88  AVNSRISFESYFDQIIRKSGD--------FDYRKITT-------KHIRSGVESRKHTPSS 132
             +   S    F ++    GD          Y +  +         +    +    + ++
Sbjct: 81  KGHVIHSK---FRRMANAMGDPVSTAFVAKTYSEFRSNRMSGRISFVDERWQKGPPSIAT 137

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEG 189
               L   + +F              L   +P +  E    + +++            + 
Sbjct: 138 LNSELARFKAMFNKLKELGEWKGPNPLEEVKPFKDHERTMAFLQKEQLTLLLELVEKHQR 197

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249
           +      +  L +G R +++ +     L     +    KT    +V + +     +    
Sbjct: 198 TDMIKIVKLCLSTGARWNEAAQLKGSQLSKYKVTFTNTKTKKNRSVPISEELYNEIYKPT 257

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAH 305
             K           +              K G+      ++H +R   A+     G    
Sbjct: 258 SEKLFEECYTPFCYI-----------LKNKLGITLPSGQASHVLRHSFASHFMMNGDNIL 306

Query: 306 ELMATYGWKTVDQAETYTKGA 326
            L    G   +     Y   A
Sbjct: 307 VLRDILGHSDISMTMRYAHFA 327


>gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296
             +  +   +    +       +  ++ T      K    +AG++K  S H +R   A+ 
Sbjct: 74  WEWQYVFPASKRSLDPRAGRERRHHLSETVLQKAVKHAIRQAGLDKRGSCHTLRHSFASH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
             + G     +    G K V     YT   
Sbjct: 134 LLEDGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|299138946|ref|ZP_07032123.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
 gi|298599100|gb|EFI55261.1| integrase family protein [Acidobacterium sp. MP5ACTX8]
          Length = 382

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 95/341 (27%), Gaps = 41/341 (12%)

Query: 25  FRKGHGRRIRLPYPHESTFI-----PAYMSALTGSTPKREYINSP---------RKKPTT 70
           +  G  R +R  +  +          A +   TG          P         +    T
Sbjct: 30  YPDGRTRWVRKSFGSDRAAAVSYVEKARLIERTGEGLLPTTARKPVLTFTEADRQAASVT 89

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESR 126
           +  L  +Y             +++      +I    G      +    I          R
Sbjct: 90  VDELADDYLAFVQANPTEFKDQVNPPRVIKEIKEVFGSHPATTLEAHQIDDWLTEIQRKR 149

Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186
              P +  +  ++   +++ A+++  V +NP  +V + K   +  +  T  ++++ ++  
Sbjct: 150 DLAPGTVNRIKSTFSGIYRRALQRSKVKVNPVRNVPQRKMDNKIGKRLTDAEIEKLRNAI 209

Query: 187 SEG--SQPRLAFEFL-------------LYSGLRCSDSCRAGVQHLQNNIFSIK--TQKT 229
            +   S+  LA                 L +  R S+        +      I     K 
Sbjct: 210 RKSGESKAHLAQYQPDVIEHRLCELDFALGTAWRKSEQYGLRWPQVDFKNKKITALNTKN 269

Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----SIWFKAKATKAGVNK 284
           G     E+     K L      K +              F       WF      A +  
Sbjct: 270 GETYVCEMMGLAEKALRRLQKLKRSRLAGRKYDAPTDAVFAIGDNKKWFAQATKDAKLKI 329

Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
             H +R  + +I A+  A    + A    K+      Y   
Sbjct: 330 RWHDLRHTAISIVAEK-APFAVVQAFSRHKSSSMVMRYAHA 369


>gi|294775012|ref|ZP_06740541.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
 gi|294451056|gb|EFG19527.1| site-specific recombinase, phage integrase family [Bacteroides
           vulgatus PC510]
          Length = 372

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 106/367 (28%), Gaps = 41/367 (11%)

Query: 13  KERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---- 65
           K++   G++  Y      G  R+  L    ++       +           I + +    
Sbjct: 7   KKQLNKGRVSLYLNYSYNGKRRKEYLGIILDAPTSAERRAENRNKVLIARQIRAKKELEF 66

Query: 66  --------KKPTTLKW--------------LISEYRKSAHWGSLAVNSRISFESYFDQII 103
                       T                 LI +Y  + H     +    +  ++     
Sbjct: 67  LSVEYHLNDIENTFDDILPTDKSNVPDFYILIGQYLDTYHKKDKKM--VRACITHLRLFT 124

Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161
           RK        +T     + +E  +     ++ I +    R+     + ++ +  NP   +
Sbjct: 125 RK-KSLPVTLLTKDFCINFLEYLRDHLRGNTPIGYFKKFRMCINKCIEKKLMTSNPTDGI 183

Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221
              +         + +++Q+        ++ + AF F  Y GLR  D  +   + +  + 
Sbjct: 184 RLMQFDEVTKAILSLKEIQKLAITPCPNNEVKRAFLFSCYCGLRWCDVHQLQYKDIDFSS 243

Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---AKAT 278
             +   +       +     + L        +     N++       +S   +       
Sbjct: 244 NRLTILQQKVQSHSKNAILHLNLNHTAIKLLQRHKGINEELVFGLPSYSYTLRILNKWVK 303

Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336
           +A ++K  + H  R    T     GA      +  G  T    E Y    D ++   K  
Sbjct: 304 RANIHKHITFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHIIDELK--QKAV 361

Query: 337 RRISSVV 343
             +  ++
Sbjct: 362 DSLPDII 368


>gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
 gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia
           JCVIHMP010]
          Length = 345

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 19/282 (6%)

Query: 75  ISEYRKSAHWG---SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVE- 124
             EY            A+ +          +           D    ++    I      
Sbjct: 53  FEEYLTQTKERIGIDRALKTFKLRTYQLSLLREYVQKKHKVSDIPLSQLDKAFIEGFEYY 112

Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDM 179
               R+   SS    +++++ + + AV++  +   P L    ERPK +   I     E +
Sbjct: 113 LTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLNFYPFLGYSYERPKGEPRSITKEELEHI 172

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
              +  W      R  F F  ++GL  SD      +++      +  +            
Sbjct: 173 IDLEIEWENYRIVRDLFVFSCFTGLAISDVRNLREENIVTEEGKLCIKGRRIKTKTPYRV 232

Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297
             +                                      G+    + H  R   A++ 
Sbjct: 233 QVLPPALTIMNRYRGIRAGFVFDVPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASLI 292

Query: 298 -ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337
              AG     +    G   +   + Y    ++RI   ++  +
Sbjct: 293 TLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQAIQ 334


>gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
 gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11]
          Length = 158

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 8/133 (6%)

Query: 204 LRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---- 257
           +R S+ C      + ++     +   K      V L    + LL                
Sbjct: 1   MRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYWCEARPEGWLFPG 60

Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315
                 ++  Q +  F +    AG+NK  + H +R   AT   +AG     +    G   
Sbjct: 61  KPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAK 120

Query: 316 VDQAETYTKGADR 328
           +     YTK A +
Sbjct: 121 LTITAQYTKVATK 133


>gi|9910723|sp|P76168|INTQ_ECOLI RecName: Full=Putative lambdoid prophage Qin defective integrase
          Length = 385

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 91/335 (27%), Gaps = 64/335 (19%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSG 122
             ++  T+K L  ++        +A  S  ++ +    I+   G+ +    I  + +   
Sbjct: 33  EARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEV 91

Query: 123 VESR----------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
            +                    +  +   ++T++  +F++ V   Y+A NP   +   K 
Sbjct: 92  RKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKE 151

Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
                 P ++E+  +         Q +  +   +Y+G+R  + C  G + +     ++  
Sbjct: 152 SRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMI 210

Query: 227 QKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN--------------- 258
           ++                   + L    +  L            +               
Sbjct: 211 RRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHFREYGRTEKQ 270

Query: 259 ---------------NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGA 302
                          N             + A   +AG+    ++  R   A  S  AGA
Sbjct: 271 KCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGA 330

Query: 303 TAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
               +    G        + Y K            
Sbjct: 331 NPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 365


>gi|329734781|gb|EGG71087.1| site-specific recombinase, phage integrase family [Staphylococcus
           epidermidis VCU045]
          Length = 470

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 78/328 (23%), Gaps = 56/328 (17%)

Query: 64  PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFD-----YRKITTK 117
            + +   ++ L  +Y K+      +A  +   +     +  +             ++   
Sbjct: 2   KKIESIKMRELAKKYLKNRLITGDIAFATARFYIRVLTRFFQNISKNKETRNSLNELDRC 61

Query: 118 HIRSGVE---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168
           HI + +E           + T +   + L ++R      + Q Y        +       
Sbjct: 62  HIEAYIEFLFEYAANKHLQSTKNFVREELKTIRRFLNDIITQNYAIAPY-QDIRFLIYPQ 120

Query: 169 EGIRP---------WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217
           +  +          +  + + +            L     +   +GLR SD        L
Sbjct: 121 DLPKHEKKNSSQIDYIPDFVLEQLFEHINDLHKDLIPVVWIAFKTGLRISDVLTLQNNCL 180

Query: 218 -----QNNIFSIKTQKTGTIITVELPDGFMKLL---------------AMTPIGKETFFI 257
                + +I +   +       + + +    ++                        +  
Sbjct: 181 AKVNGKYSIITDIAKTFVKGHRIPIDNKLADIIAVLIADSKSKSTKDNNPNNYIFAIYKG 240

Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMA 309
                              +    +        +   H  R   A    + GA    +  
Sbjct: 241 KRKGMPFTQHMVRAHLNHLSKIKNIIDEQGEIFHFKTHQFRHTYAVKLLNGGADILTIQE 300

Query: 310 TYGWKTVDQAETYTKGA-DRIRLGIKNS 336
                + +    Y K   D  R   ++ 
Sbjct: 301 LLAHSSPEMTLRYAKLLDDTKRKAFESV 328


>gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 145

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGW 313
           +   ++++     +  F     +AG+ +   + H +R   AT   + GA    L    G 
Sbjct: 58  MRTSRKRIGKNYLNALFHRCLREAGIRRKGLTLHKLRHTFATRLLERGADLRTLQELLGH 117

Query: 314 KTVDQAETYTKGADRIRLGIKNSRRIS 340
           + +   + Y   +    L  +  R + 
Sbjct: 118 ENLSTTQVYVHASSERLL--QAVRLLD 142


>gi|91212010|ref|YP_541996.1| hypothetical protein UTI89_C3009 [Escherichia coli UTI89]
 gi|117624890|ref|YP_853803.1| hypothetical protein APECO1_3866 [Escherichia coli APEC O1]
 gi|218559644|ref|YP_002392557.1| hypothetical protein ECS88_2917 [Escherichia coli S88]
 gi|237706730|ref|ZP_04537211.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073584|gb|ABE08465.1| hypothetical protein UTI89_C3009 [Escherichia coli UTI89]
 gi|115514014|gb|ABJ02089.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218366413|emb|CAR04165.1| conserved hypothetical protein [Escherichia coli S88]
 gi|226899770|gb|EEH86029.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294489504|gb|ADE88260.1| phage integrase [Escherichia coli IHE3034]
 gi|307625776|gb|ADN70080.1| hypothetical protein UM146_03320 [Escherichia coli UM146]
 gi|315284905|gb|EFU44350.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 110-3]
 gi|323951124|gb|EGB47000.1| phage integrase [Escherichia coli H252]
 gi|323957134|gb|EGB52859.1| phage integrase [Escherichia coli H263]
          Length = 390

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 85/285 (29%), Gaps = 29/285 (10%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+K  + EY +      L+ ++   ++      +         ++T   +++ ++S
Sbjct: 87  AASKTVKMYLDEYLEICETRKLSPSTIGGYKK-CRSALASLHICPASELTPATLKAWIQS 145

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
           +K T  +    L+ +R     AV    + INP   V   + +++     +   +      
Sbjct: 146 QKTTLKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPA 205

Query: 186 WSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231
             +         Q    F F +++GLR S+ C      +     +   Q           
Sbjct: 206 EVDALLAAAGNKQWENLFRFAIHTGLRSSELCALRWHDIDFVGKTAHVQSASVVGVIKGT 265

Query: 232 -----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATK 279
                   VEL +  M  L               +       +          +     K
Sbjct: 266 KTKAGTRKVELTEEAMLALINQKPFTFMKDATVFEDPKTNKPWASADAIRKKAWVPTLRK 325

Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
           AG+     +  R   AT     GA    L A  G K  +     Y
Sbjct: 326 AGIRYRNPYQTRHTFATSHISRGANLFWLAAQMGHKGPEMLFRHY 370


>gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288
              +      +  +     +  +       +  + A       KA   +AG+ KS   H 
Sbjct: 66  KYRSANRSWPWQYVFPADRLSVDPRSGEKRRHHVLANNLQKAVKAAMVRAGIRKSGSCHT 125

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
            R   AT   + G     +    G K V     YT   
Sbjct: 126 FRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHVL 163


>gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16]
 gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16]
          Length = 355

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++  +            N     + P            E + + +      ++ R
Sbjct: 147 NITLKNISGV------------NQSAGSKLPTHLNNEELEKFLESIDKIEMSAKVHARNR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPI 250
           L  + ++++G+R +++ +  ++               K      V L    ++ L    +
Sbjct: 195 LLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWL 254

Query: 251 GKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +   +         N     +         +     AG+ +    AH +R   AT+   
Sbjct: 255 MERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQ 314

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +    G  +++ +  YT   D+ RL    
Sbjct: 315 KRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAA 349


>gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
 gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855]
          Length = 387

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 81/279 (29%), Gaps = 20/279 (7%)

Query: 72  KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126
              +  YRK              +E  +        G   + +I         E      
Sbjct: 109 ADFLEYYRKQLRKHDQK------WEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLLSAK 162

Query: 127 ------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                 + T +SA  + ++ R   K   R   +  N    +E+ + +       + E++ 
Sbjct: 163 KLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDTMKEALSVEELY 222

Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
           Q      +    ++A  F   + LR SD      + + +     K     T         
Sbjct: 223 QLAETPCKKPIVKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKTEDII 282

Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298
            +   A+  IG  +       + +  +      K     AG+ K  + H  R+   T+  
Sbjct: 283 PISEEALGLIGYSSEKKGLVFKGLMRSWTQAPMKEWIRSAGITKNITFHSYRRTFTTLQG 342

Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336
            AG     + +    K++     Y K  D   R      
Sbjct: 343 AAGTDVRTIQSIMAHKSITTTMRYMKVVDSNKREASNKI 381


>gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium]
          Length = 181

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 9/133 (6%)

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253
             +     +G           Q++       +  +        + D  ++L        +
Sbjct: 56  WVWLPYALAGKYPQAGRSLEWQYVFPAKSLGREPRPREAREQNVADATVEL-------AQ 108

Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311
                  +  ++ T           +AG+      H +R   AT   +AG     +    
Sbjct: 109 DPANQVRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELL 168

Query: 312 GWKTVDQAETYTK 324
           G   V     YT 
Sbjct: 169 GHSDVSTTMIYTH 181


>gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16]
 gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16]
          Length = 412

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 93/337 (27%), Gaps = 39/337 (11%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72
           + R RH       R G G R  L +  +  F+           P+R           +  
Sbjct: 74  RYRARH------VRPGPGDRAALRHLID--FLDRERLISAQRMPERRLTPIE-----SCT 120

Query: 73  WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSG--VESRK 127
               EY       +L+  + +++  +  + +      G     ++    + +    ++ +
Sbjct: 121 QAYVEYL--HEARALSKATIVNYVPFIREFLEDCFGDGRIRLSRLRAGDVVNFVQCQALR 178

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQ 181
                A    T++R   ++A  +  + ++         +               ++ +  
Sbjct: 179 LHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSMQSIPRGIPPEQIQQLLVS 238

Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236
                + G +       L   GLR  +     +  +  N   +  +             +
Sbjct: 239 INRRTAVGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRGKSGQRNGLPLPAD 298

Query: 237 LPDGFMKLLAMTPIGKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288
           +       L        +  +             A+      +    +AG++     AH 
Sbjct: 299 VGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGVGSIVRHSLQRAGIDAPTTGAHQ 358

Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            R   A      GA+  E+    G       + YTK 
Sbjct: 359 FRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKV 395


>gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae]
          Length = 315

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 86/313 (27%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 8   LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 67

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E   +   +  +RP          + E++ +  +     
Sbjct: 68  AGTQNQALAALLFLYREVLGVELPWMENLVRAKRP---RRIPVVLSAEEVARLLT--MLE 122

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
              RL    L  SG+R  +  R  ++ +        ++  K G    V  P      L  
Sbjct: 123 GSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQ 182

Query: 248 TPIGKETFFINND---------------------------------------------KQ 262
                      +                                              + 
Sbjct: 183 QRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGRH 242

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        ++   +AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 243 HVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQ 302

Query: 321 TYTKGADRIRLGI 333
            Y     R    +
Sbjct: 303 IYAHVLGRGASAV 315


>gi|25010311|ref|NP_734706.1| hypothetical protein gbs0237 [Streptococcus agalactiae NEM316]
 gi|23094663|emb|CAD45882.1| unknown [Streptococcus agalactiae NEM316]
          Length = 377

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 116/384 (30%), Gaps = 64/384 (16%)

Query: 14  ERTRHGKIIYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            + + G  I     G         R +R  Y  +     A     +    +R Y      
Sbjct: 4   RKDKDGGWIVDISNGFDPITLKQRRVVRKGYKTKKEATEAEHYLRSVELKERFYG----- 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD-YRKITTKHIRSGVE 124
              T+  L    ++  +     V+   + E+ +   I       D   K+T + I    E
Sbjct: 59  AKITVSMLYELLKEEDNINHRKVSYINTQENNYNKHIKDYFSKVDYVGKLTYEDIYQFRE 118

Query: 125 SRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             +   +          +  + +  ++ +F   +R+ Y + NP   +++   +   ++ W
Sbjct: 119 HLRKKVAQNSDNLLSSNTINKIMILLKKIFDIGLRKGYYSTNPVKLLKKLPIEKTKMQFW 178

Query: 175 TKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231
           T ++ QQF + +  E    +L F  L ++GLR  ++     Q +  +  +I   K+    
Sbjct: 179 TVKEFQQFLTLFEPEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFSSNTIHITKSVYVN 238

Query: 232 ------------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265
                                      ++      K L                  +   
Sbjct: 239 KGISHINTTKTKAGTRRIVLNKKLSQELQDWQQQQKHLLEQFTSDNLTLQVFQSSPITIT 298

Query: 266 ATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321
                  +K    +     +    H  R   A++  + G     +    G  ++    +T
Sbjct: 299 KNAIEKQYKKILERDNTLKI-IRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDT 357

Query: 322 YTKG--ADRIRLGIKNSRRISSVV 343
           Y+    + +  L      ++  ++
Sbjct: 358 YSHLYPSKQKDLA----DKLDDLI 377


>gi|253751680|ref|YP_003024821.1| tyrosine family site-specific integrase [Streptococcus suis SC84]
 gi|251815969|emb|CAZ51585.1| tyrosine family site-specific integrase [Streptococcus suis SC84]
          Length = 399

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 108/371 (29%), Gaps = 48/371 (12%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKG----HGRRIRLP------YPHESTFIPAYMS 49
           M          V       GKI Y    G     G+R++             T   AY  
Sbjct: 1   MATKSSKKYKGVYC--DNKGKIFYQIDLGIDPVTGKRVQKKARKNQYGKTFETMKEAYDE 58

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLIS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            +         ++       T +  ++  Y ++      +V +  +   +    I+  G 
Sbjct: 59  LVRIKYEFANKVHL-ENYNMTFENYMNTIYLRAYKQKVQSV-TYKTALPHHKLFIQYFGS 116

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              + IT +   +        ++ + A    +  +    +A R  Y++  PC +++ P+ 
Sbjct: 117 KPLKAITPRDCEAFRLHIIENYSENYAKNLWSRFKACMGYAERLGYISDMPCKALDNPRG 176

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--- 219
           K      WT  + Q F         E  Q   A      +G+R S+      + +     
Sbjct: 177 KHPETPFWTYAEFQTFIKSFDLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKK 236

Query: 220 ---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--- 261
                               +T+       +EL D  +++L +    +      +     
Sbjct: 237 FLKVHTTLEKDENGNWYRKDQTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISR 296

Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKTVD 317
                  +      K KA + GV   +  G+R   A+   +        +    G     
Sbjct: 297 FGDPFCKSTICRIIKRKAQQVGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKS 356

Query: 318 QA-ETYTKGAD 327
               TY+   +
Sbjct: 357 TTLNTYSHWFN 367


>gi|126207972|ref|YP_001053197.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           L20]
 gi|303250282|ref|ZP_07336482.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126096764|gb|ABN73592.1| predicted phage integrase family protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302650898|gb|EFL81054.1| phage integrase family protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 346

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 107/345 (31%), Gaps = 33/345 (9%)

Query: 2   TPSLR----LPPFV--TKERTRHGKI--IYYFRKGHGRRIRLPYPHESTFIPAYMSALTG 53
            P  R    LP  +   + +   G+I   +Y+     +   L           Y + L  
Sbjct: 3   RPRKRENNGLPQNLLCRRRKRASGQIVEYFYYVMADSKEKSLGT-------NKYEAVLEA 55

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDY 111
           +    E+             +   Y         A N+R S       + +  GD     
Sbjct: 56  AKLNFEFQKKGEVVL--FIDVAKRYEVEIVPTKKAKNTRQSNLQAIGWLCKFFGDPPIPL 113

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +I  +HI+  ++ RK TP+ A   +     +  W   +E+   +     +  K+     
Sbjct: 114 ERIEPQHIKQYLQWRKDTPAVANIEVGLFNTI--WNSAREWGYTSLPSPSQGVKKFPTKY 171

Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231
           R    ED    K +     +     E     G R  D C     H+ N I  I  QKTG 
Sbjct: 172 REIYVEDYILEKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIYNGILHITQQKTGK 231

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-------- 282
            +  E+     +++      + T+   N   K  +    ++ F+    KA          
Sbjct: 232 KVRFEITGRLKEIIDKRLQPETTWLFTNKWGKKLDRQILTVHFREIREKAMRAYPELANE 291

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
                   +R  +AT      AT  +     G  +    + Y + 
Sbjct: 292 IGKVQMRDMRAKAATD-ISLTATDEQAQKQLGHTSKRMTQHYIRK 335


>gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180]
 gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180]
          Length = 356

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 76/264 (28%), Gaps = 40/264 (15%)

Query: 86  SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145
            L++ ++ ++      +       +  +    +I                 L ++  +  
Sbjct: 113 GLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY-------------NITLKNISGV-- 157

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205
                     N     + P            E + + +      ++ RL  + ++++G+R
Sbjct: 158 ----------NQSAGNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNRLLIKIIVFTGMR 207

Query: 206 CSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPIGKETFF------ 256
            +++ +  ++               K      V L    ++ L    + +   +      
Sbjct: 208 SNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL 267

Query: 257 --INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATY 311
              N     +         +     AG+ +    AH +R   AT+          +    
Sbjct: 268 LFCNQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEAL 327

Query: 312 GWKTVDQAETYTKGADRIRLGIKN 335
           G  +++ +  YT   D+ RL    
Sbjct: 328 GHASLNTSRIYTH-FDKERLKEAA 350


>gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 413

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/390 (12%), Positives = 101/390 (25%), Gaps = 73/390 (18%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKW 73
           R   G  IY +   +G+R  +      T        +       +Y          T   
Sbjct: 24  RKLDGMYIYTYVNPYGKRCYVYSKDLFTLREKEQELIKAQMDGLDYYVGGHATINMTF-- 81

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKH 128
               Y  +    +L   +R ++   F++ IR   G+    ++    ++         +  
Sbjct: 82  --DRYMSTK--HNLRETTRSNYLYMFNRFIRADFGNKFLTEVKYTDVKLFYYHLLNEKDI 137

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-----VERPKRKTEGIRPWTKEDMQQFK 183
             ++     T +  +F  AVR + +  NP             +        T E  Q F 
Sbjct: 138 AINTLDTIHTVLHPIFDMAVRDDIIRKNPTDGVLAEIKRNSGKNKGIRHALTIEQQQAFM 197

Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------- 224
                + E       F  LL +G+R  +        +      I                
Sbjct: 198 DTIRTFPEYYHWYPLFATLLGTGMRIGECTGLTWNDVDFKRRCISVNHAATYYTRNGVAG 257

Query: 225 ----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNA 266
               + +    I  + + D     L      ++       +                 N 
Sbjct: 258 FAISRPKTEAGIRQIPMMDAVYNALKNEYDRQKKDGFCTYELDGVSGFIFSNKLGLLHNP 317

Query: 267 TQFSIWFKAKATKAG-----------------VNKSAHGVRKFSATISADAGATAHELMA 309
              ++  K                         + S H +R    +   ++      +  
Sbjct: 318 HCVNLAIKRIYEAHNAREIIDAKREHREPIIIPHFSCHVLRHTFCSRLCESDMNVKVIQE 377

Query: 310 TYGWKTVDQA-ETYTKG-ADRIRLGIKNSR 337
             G K V+   + YT+   ++ +  ++   
Sbjct: 378 IMGHKNVETTLDIYTEVNYNKKKDSLEELA 407


>gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 377

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/382 (12%), Positives = 111/382 (29%), Gaps = 60/382 (15%)

Query: 14  ERTRHGKIIYYFRKGHG------RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            + + G  I      +G      ++ R+      T   A  +         E        
Sbjct: 4   RKGKDGNWI--VDISNGFDPITLKQRRIVRKGYKTKKEAIEA--EHYLRSVELKERFYGA 59

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRI----SFESYFDQ---IIRKSGDFDYRKIT--TKH 118
             T+  L    ++         +       ++  +      ++   G   Y  I    +H
Sbjct: 60  KITIPILYELLKEEDSINHRKASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREH 119

Query: 119 IRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           +R  V      P   ++  + +  ++ +F   +R+ Y   NP   +++   +   ++ WT
Sbjct: 120 LRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIEKTKMQFWT 179

Query: 176 KEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--- 231
            ++ Q F + + +E    +L F  L ++GLR  ++     Q +     +I   K+     
Sbjct: 180 VKEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNK 239

Query: 232 -----------------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--A 266
                                     ++      K L                  +    
Sbjct: 240 GISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITK 299

Query: 267 TQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323
                 +K    +         H  R   A++  + G     +    G  ++    +TY+
Sbjct: 300 NAVENQYKKILERDSTLKKIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYS 359

Query: 324 KG--ADRIRLGIKNSRRISSVV 343
               + +  L      ++  ++
Sbjct: 360 HLYPSKQKDLA----DKLDELL 377


>gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 354

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 33/280 (11%)

Query: 92  RISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145
             ++ +   +I   ++         I  + I   + S   +    S     + ++   F+
Sbjct: 73  INTYFNPLKKIYEVLKFYELTSLAVIDEELISEVLASITGSLSDASKKNYRIAAIN-FFE 131

Query: 146 WAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFW------SEGSQ 191
           +  +Q       ++      +          +      +E++++F +           ++
Sbjct: 132 FIGKQNEEDGKAHIFDIELKNWGGVSGNKGQKLPEFMNEEEVKRFLNAIDETDFKMNSNR 191

Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251
            +L  + ++++G+R S++     + +  +      +  G      +      L+      
Sbjct: 192 NKLIIKTIVFTGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVMIKKHLIDEHLQN 251

Query: 252 KETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300
               +IN++          K+     S   +     AG+ K    AH +R   AT+    
Sbjct: 252 IVINYINSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKK 311

Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRI 339
                 +    G  +++ +  YT   +D+++L  K +  +
Sbjct: 312 QKDLVLVQEALGHASLNTSRIYTHFDSDKLKLAAKVAEDL 351


>gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296
             +  +        +       +  + +       K   T A +  + + H +R   AT 
Sbjct: 74  WKWQYVFPANKRSIDPRSNVIRRHHITSATIQRAMKNAVTSAEIVKHATVHTLRHSFATH 133

Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326
              AG    E+    G K+ +    YT   
Sbjct: 134 LLMAGTNIREVQELLGHKSAETTMIYTHVL 163


>gi|331673161|ref|ZP_08373929.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
 gi|331069359|gb|EGI40746.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli TA280]
          Length = 431

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 111/411 (27%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAY--------MSALTGST 55
           ++ P  V       GK+  ++  KG   R  L  P  +               +  TG  
Sbjct: 6   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRSSVCYAIKTGVF 62

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 63  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 121

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 122 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 181

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+  NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 182 GYLPDNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 240

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 241 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 300

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 301 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 360

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 361 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 411


>gi|237718339|ref|ZP_04548820.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
 gi|229452272|gb|EEO58063.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4]
          Length = 410

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 72  KWLISEYRKSAHW------GSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI 119
           + L+  Y +               ++   F++  +++           D    ++  + I
Sbjct: 111 RSLLEVYAEHNEKCRALIGKEYTESTVTKFDTSINRLKEYIRSCYHCDDIMLAELDGQFI 170

Query: 120 RSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175
           R      K       +SA++ L +++ + + A+  +++  +P   +   K++   +   +
Sbjct: 171 RDFDFWLKTEKHCQNNSALKHLKNLKKVVRIALANDWIKKDPFYGI-HFKQEEVNVEFLS 229

Query: 176 KEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232
           +E++    +      +    R  F F  ++ L   D  +   +HL  +       +    
Sbjct: 230 REELDILMNKEFAIKRLEQVRDIFIFCCFTALAFVDVQQLSREHLIKDNNGALWIRKARQ 289

Query: 233 ITVELPDGF-----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286
            T ++ +        ++L       E          ++  + + + K  A   G+ K   
Sbjct: 290 KTNQMCNIPVLSIPQRILRKYEDNVECIKKGVLLPVISNQRMNAYLKEIADVCGIAKRLT 349

Query: 287 -HGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGAD 327
            H  R  +AT+       +   +    G   +   + Y +  D
Sbjct: 350 THVARHTAATVVFLANDVSMENVSKILGHSNIRMTQHYARILD 392


>gi|254186414|ref|ZP_04892931.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
 gi|157934099|gb|EDO89769.1| phage integrase [Burkholderia pseudomallei Pasteur 52237]
          Length = 379

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 111/373 (29%), Gaps = 41/373 (10%)

Query: 2   TPSLRLPPFVTKERTR---------------HGKIIYYFRKGHGRRIRLPYPHESTFIPA 46
           T   +LPP       R                G  I   R   G++          F  A
Sbjct: 9   TARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALGTLPNFDDA 68

Query: 47  YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--R 104
             + L  S      +++   K TT+K     Y K         +S+   E  F +++   
Sbjct: 69  VKATLEWSKAADAGVST---KTTTVKDACEHYAKHLGLHK-GASSKSDAEGRFKRLVYDD 124

Query: 105 KSGDFDYRKITTKHIRSG--------------VESRKHTPSSAIQFLTSMRVLFKWAVRQ 150
           K G  D  K+ T H++                 +  +    SA + L S++     A+  
Sbjct: 125 KIGRIDLAKLRTSHVKDWLAEQISEIEESAEDEDDLRRAKDSANRNLASLKAALNLALHD 184

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
             VA +         +     R        +     +     R   + +L++  R  +  
Sbjct: 185 RLVATDAGWKTVTKFKDVGRRRQSFLPAEDRNALIGASAEDLRQLIKAMLFTAARPGELA 244

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFINNDKQKMNAT 267
           RA V+H      ++          V L    ++       GK      F     Q  N  
Sbjct: 245 RAYVKHFDRLQGTLVLDGKTGHRVVSLSSAAIRFFEDQTKGKIANAPIFSTEYGQPWNKD 304

Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325
            +   FK     A +  S   + +R  + +    +G  + E+    G  T    + Y   
Sbjct: 305 SWKKPFKDAVKAAELPASVVMYSLRHTAISEMIASGIDSFEVARMAGTSTEMIDKHYGHL 364

Query: 326 A-DRIRLGIKNSR 337
             DR+R  +    
Sbjct: 365 RHDRMRAKLDAIA 377


>gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
 gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185]
          Length = 447

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 86/294 (29%), Gaps = 22/294 (7%)

Query: 57  KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKS------G 107
            +  +        TL  L  E+ +          +R S+  Y      I           
Sbjct: 106 IKNAVTGKSDVKETLLSLFDEHNEEYAKRVGIDRTRHSYVRYLTTRKHISNFLKFKYDLE 165

Query: 108 DFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163
           D   R +T K +           +   S+   +L  +  + + A+++  +  +P    + 
Sbjct: 166 DIPLRSLTMKFMTDFTFYFSTVLQLKVSAYNDYLILLHKMTRLALKKHILKRDPFAGHK- 224

Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220
            ++     R   +E  ++  +      +    R  F F +++G+  +D       ++   
Sbjct: 225 IEKVPVNHRHLNREQFEKLLNARLPTYRLCHTRDLFVFSVFTGIGRADLANLTEDNIITK 284

Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKAT 278
               K        T       +  + +  I K      + +              K  A 
Sbjct: 285 EDGSKWIHIARQKTKAECHIKLLDIPLRIIEKYKGEGKDGRLFYVPQTCNLCRSLKIIAE 344

Query: 279 KAGV--NKSAHGVRKFSATI-SADAGATAHELMATYGWKTVDQAETYTKGADRI 329
           +  +  + + +  R   AT+     G     +    G  ++   + Y +  +  
Sbjct: 345 QCNLGCHLTFYQARHSFATLICLSNGVPIETISKMMGHYSIRTTQIYAEITNHK 398


>gi|71901817|ref|ZP_00683883.1| Phage integrase [Xylella fastidiosa Ann-1]
 gi|71728416|gb|EAO30581.1| Phage integrase [Xylella fastidiosa Ann-1]
          Length = 357

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 96/347 (27%), Gaps = 35/347 (10%)

Query: 11  VTKERTRHGKIIY--YFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65
           +   R + G   Y    R  H  +I        +  T    +++    +   +     P 
Sbjct: 4   IVARRRKDGTRGYTARIRLKHEGKIIHSEAKTFNTRTLAKEWITRREATLQGQRTRGEPV 63

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
               T+  ++  Y            ++ +  +       + G     ++T +     +E 
Sbjct: 64  GHRMTVAEMVEWYENRERPEEPWGRTKKAELAALRT--GRMGCKRVDQLTRQDFIEQIEY 121

Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRP 173
           R+     PS+A   L  +R +FK A+    V +                   +     R 
Sbjct: 122 RRKVGAGPSTASNDLIWLRQVFKTALAVFGVPVPLMALDEAGEFLRQHRIIAKPKRRDRR 181

Query: 174 WTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T E+  +  +   E        +   F L +  R  +  R     L  +      +   
Sbjct: 182 LTVEEEMKLLTHMDERRGPIPMGMIVRFALLTARRQDEITRLLWTDLDRDKGIALLRDVK 241

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKAT 278
                   +   ++L+      +                       ++   S  F     
Sbjct: 242 HPTRRIGNNKTFRMLSPAWALIDMQQKMTMCHVIGKETQDPRVFPFDSKSISAAFTRAVR 301

Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324
             G+ +   H +R  + +   + G +  E+      ++    + YT 
Sbjct: 302 FLGIKDLHFHDLRHEATSRLFEKGYSIQEVAQFTLHESWTTLKRYTH 348


>gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
 gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter
           coli JV20]
          Length = 368

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 96/292 (32%), Gaps = 31/292 (10%)

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135
           +    +  +N   ++ +   ++            ++I  + I   + S     + +S   
Sbjct: 76  AKKARNAGLNGVNTYFNPLKKVFEYLNFYKLHSLKQIDEELIVEVLASITGALSDASKKN 135

Query: 136 FLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS 187
           +  ++   F +  +Q       ++      +          +      ++++++F     
Sbjct: 136 YRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNEDELKKFLEAIE 195

Query: 188 EGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241
                    + +L  + ++++G+R S++    ++ +         +         +    
Sbjct: 196 NSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIRIRAKGNKYRVVMIK 255

Query: 242 MKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290
            +L+          +        +N + + +     S   +    +AG+ K    AH +R
Sbjct: 256 KELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAYVSRIVEQILFRAGIRKQKNGAHMLR 315

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
              AT+          +    G   ++ +  YT    D+++L  + ++ +S 
Sbjct: 316 HTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKLKLAAQVAKELSE 367


>gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2]
          Length = 363

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 103/345 (29%), Gaps = 39/345 (11%)

Query: 23  YYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80
           YY      + I+L         F   +  A+  +T  R  I           +LI E   
Sbjct: 6   YYDDLTARQTIKLRELIKTLPPFAKEFFRAIDSTTQVRTRIAYAYDLRVFFHFLIDE--- 62

Query: 81  SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140
           +  + + +V       S  D+I     +     +         +  ++T     + ++++
Sbjct: 63  NPAYRNYSV--LDFKVSDLDKIESVDLEEYMEYLKVYISEEQHKHMQNTEQGVFRKMSAL 120

Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------- 190
           R  + +  +++ +  NP L V+ PK + + I     +++     F   G           
Sbjct: 121 RSFYGYFYKRQLIEKNPTLLVDMPKIREKEIIRLEADEVASLLDFVEHGGDHLTGQKLAY 180

Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF--- 241
                 +       LL +G+R S+     V  +      +   + G              
Sbjct: 181 YEKTKERDLAIITLLLGTGIRVSELVGLNVDDVDFRNNGLHLIRKGRKEMTVYFGNEVAD 240

Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                     KL+      ++  F +  ++++         K  A +       + H +R
Sbjct: 241 ALEQYIEGSRKLIIPKEGHEDALFYSMQRRRIGVQAVQNLVKKYAKEVTPLKKITPHKLR 300

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD-RIRLGI 333
               T         + +    G   V+     Y   +D R R   
Sbjct: 301 STYGTALYQETDDIYLVAEVLGHSDVNTTRKHYAAMSDTRRRQAA 345


>gi|196044477|ref|ZP_03111712.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
 gi|196024512|gb|EDX63184.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108]
          Length = 371

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 86/343 (25%), Gaps = 75/343 (21%)

Query: 77  EYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK------- 127
           +Y K       + N++ ++              + DY+ I+ + +   +   +       
Sbjct: 30  KYLKYIDTTGKSANTQRTYCYSLKHFFTYLDETNKDYKYISLEDLVEFIGWLRSPYKSPK 89

Query: 128 ----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----------------- 160
                      T  +    +T +   + +  R E +  +                     
Sbjct: 90  VTPLQQEKATRTEKTINLTITVIANFYDYLFRNEEIQNDMMEKLMKQVFTGGHSRYKSFL 149

Query: 161 ---------VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDS 209
                    +    +  E  +       +Q +   +  +  R  F   L   +GLR  + 
Sbjct: 150 HHINKDKPSIRNVLKLKEPRKKLKILTKEQVQQVLNATTNIRDTFLIQLLFETGLRIGEV 209

Query: 210 CRAGVQHLQNNIFSIKTQKTGTI-----------------ITVELPDGFMKLLAMTPIGK 252
               ++    +       +                     ++  L D +   L       
Sbjct: 210 LSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREIFVSQSLMDLYDDYLYEIMDEL 269

Query: 253 ETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304
           +        +         M  +     FK    K G+N   H  R   ATI        
Sbjct: 270 DVDTNFVFIKLRGENAGKPMTYSDVESLFKRLKKKTGINLHPHLFRHTHATIYYQKTKNI 329

Query: 305 HELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346
            ++    G   +      Y   ++      ++ ++  S  D +
Sbjct: 330 KQVQERLGHSQIQTTMNLYLHPSEEEIR--EDWKKAQSEFDLN 370


>gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293
               G+  +     I  +       +  + +       K    KA +    S H +R   
Sbjct: 71  CREWGWQYVFPSGNISSDPRTGRKSRYHIYSQSIQRAIKMALRKADIIKPASTHTLRHSF 130

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326
           AT   + G     +    G K V     YT   
Sbjct: 131 ATHLLENGYDIRTVQELLGRKDVSTTMIYTHVL 163


>gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1]
 gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1]
          Length = 318

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 95/317 (29%), Gaps = 36/317 (11%)

Query: 43  FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102
           F P+ +  L  ++         R K  TL++       +AH  +   N+R ++       
Sbjct: 2   FAPSQLELLPAASVPALLAPDARAKARTLEFF------TAHIRN--PNTRKAYARAGQHF 53

Query: 103 IRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
                  G  D R++   H+   VE       S  Q L ++R LF W V  + + INP  
Sbjct: 54  ADWCARFGIGDVRQVQPVHVALYVEQLDLAAPSVKQRLAALRALFDWLVVGQVMPINPAA 113

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAG 213
           +V  P+   +  +       +      S       G + R     ++Y+  R     R  
Sbjct: 114 AVRGPRYSVKTGKTPVLSASEVRDLVESIDAESLVGMRDRALIGTMVYTFARVGAVTRLR 173

Query: 214 VQHLQNNI---FSIKTQKTGTIITVELPDGFMKLLAMT--------------PIGKETFF 256
           V+ +       +    +K G    +       + L                         
Sbjct: 174 VEDVYTQRRRLWVRLDEKGGKRHEMPCHHRLEEWLYDYLEAAGIADDPGGPLFRSARAAT 233

Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314
                + M+        + +A  AG+      H  R    T     G            +
Sbjct: 234 DTLTSRPMSQADVYRMIRRRAEAAGIATAIGCHSFRATGITEYLLNGGKLEIAQQMANHE 293

Query: 315 TVDQAETYTKGADRIRL 331
           +      Y +  D+I+L
Sbjct: 294 SSRTTGLYDRRGDQIKL 310


>gi|261819964|ref|YP_003258070.1| integrase [Pectobacterium wasabiae WPP163]
 gi|261603977|gb|ACX86463.1| integrase family protein [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 85/284 (29%), Gaps = 32/284 (11%)

Query: 63  SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQI-------IRKSGDFDYRKI 114
             R K   L   + +Y            +   ++     +             +    +I
Sbjct: 2   KKRIKKMLLSQALDKYFA----------TVSRYKRGQLQEFYRINVIKRSPLANRHMDEI 51

Query: 115 TTKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164
           ++  I    + R            + ++    L  +  L+  A  +     +  +   R 
Sbjct: 52  SSVDIAGYRDDRLAQINPRTKKSISGNTVRLELALLSALYNLAKVEWGTCTSNPVEHVRK 111

Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNIF 222
              + G         ++  + +  G +P L   F L   + +R  +      +++   + 
Sbjct: 112 PAVSSGRVRRLTSQEERGLTRYFRGKKPELLAIFRLAIETAMRQGEILSLRWENIDLRLG 171

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                 T      ++P      L +  IG+       +     ++ F   ++       +
Sbjct: 172 IAHLPLTKNGSARDVPLSSKARLVLKEIGELGRDDTGNVFTYTSSGFKSAWRIALQSLSI 231

Query: 283 -NKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324
            +   H +R  + +   + G     E+ A  G K+++  + YT 
Sbjct: 232 NDLHFHDLRHEAISRLFELGTLNVMEVAAISGHKSMNMLKRYTH 275


>gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
 gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217]
          Length = 363

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 76/263 (28%), Gaps = 20/263 (7%)

Query: 82  AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139
                +  ++  ++++    +    GD      +   IR  V  R   H  + A   +T+
Sbjct: 84  LRNRGVLDSTLDTYQNILVHMFLVLGDAP-EAYSAHAIREFVLGRAGMHGVAHARITVTA 142

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR----PWTKEDMQQFKSFWSEGSQPRLA 195
            R   ++ +           ++                 T               + R  
Sbjct: 143 TRAFLRFLIATGRCPAGRDQAIPNFAGWQLAPVPDFLNDTDITRIVAACSGEARLRDRAV 202

Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF------MKLLAMTP 249
             FL+  GLR S+       H+      I  +   +     LP         +  L    
Sbjct: 203 ILFLVRLGLRASEVANLEFDHIDWRNGRIAIRGGKSRREEWLPLPQEVGEALLAYLDRGR 262

Query: 250 IGKETFFIN----NDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302
               T  +     N  + M+    +   +A   +AG+    + +H +R  +AT     G 
Sbjct: 263 PSFATPRVFVTAKNPMRPMSRFAVNCLVQAALDRAGIQSGRRGSHLLRHSAATAMLRHGV 322

Query: 303 TAHELMATYGWKTVDQAETYTKG 325
               + A    +++     Y K 
Sbjct: 323 NLAGVGAVLRHRSLSTTMQYAKV 345


>gi|325106214|ref|YP_004275868.1| integrase family protein [Pedobacter saltans DSM 12145]
 gi|324975062|gb|ADY54046.1| integrase family protein [Pedobacter saltans DSM 12145]
          Length = 405

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 87/319 (27%), Gaps = 35/319 (10%)

Query: 45  PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104
                     + ++       K+            +      ++  +   +  Y  +  +
Sbjct: 78  ADVERTRKSVSARKLKEAIKGKEDPNFFNYCDRRLEKIKSI-VSYRTADIYNIYIKKFEK 136

Query: 105 KSGDFDY--RKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158
             G  D+    I T  +        ++ K+  ++    L  +R+ +  A+++E +     
Sbjct: 137 FIGHRDFYFSDINTTLVGDYANYCKKTLKNGNTTTHMSLKILRIFYNDAMKEELIPYAVS 196

Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS------GLRCSDSC-- 210
              +    K+   R +  +   +         +P       ++       GLR SD    
Sbjct: 197 PFEKVKIPKSNVERQYLNKQQLEDLENLDLSQKPHAVVHRDMFLFSVYAGGLRISDVLLL 256

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270
           +    + +    +   QKT    T ++    ++++                   N  +  
Sbjct: 257 QWKSYNEETKKITKVIQKTQKQHTFKIGTKAVEIINKYKPKNSNPDAFIFPVLENPERIF 316

Query: 271 --IWFKAKATKAGV------------------NKSAHGVRKFSATISADAGATAHELMAT 310
               FK+   +  +                      H  R   AT + + G     +   
Sbjct: 317 GDEQFKSLKLRGKIRLGDVHLDKMGEEIKLPFKLHFHLSRHTFATNALNNGMRIEYVSKL 376

Query: 311 YGWKTVDQAETYTKGADRI 329
               ++ Q + Y K     
Sbjct: 377 LDHSSIRQTQVYAKIVSEE 395


>gi|262368508|ref|ZP_06061837.1| shufflon-specific DNA recombinase [Acinetobacter johnsonii SH046]
 gi|262316186|gb|EEY97224.1| shufflon-specific DNA recombinase [Acinetobacter johnsonii SH046]
          Length = 338

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 102/322 (31%), Gaps = 22/322 (6%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K   R        +  H R        +     A+   +       + + +  K   T
Sbjct: 1   MQKPVKRGNAWRIQVKYKHLRDAATRDTSQECIQWAHKRLMELQLEYEKQLKNLDKPQYT 60

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128
           +K L + Y +     + +     +   Y ++   K  ++    +T K I    E R    
Sbjct: 61  VKQLFNIYYEKIGQFTKSKVYIKNHIKYLERYYGKLTEYSIYDLTPKLITENRERRLQYV 120

Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVERPKRKTEGIRPWTKEDMQQFKS 184
              +  + ++    +F +AVR+ ++  +          +P  +   I     + +     
Sbjct: 121 KAGTIHKEMSLGSSVFTFAVRELFLLPSNPFNLVKKPIKPPARKNRISQDQIKMVLVGLD 180

Query: 185 FWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237
            + EG  P+        +F F L + +R  +      QH+  +   +   K GT   V L
Sbjct: 181 NYEEGMVPKTPAHYVAWSFLFALETAMRKGEILGIENQHVFPDYVHLPDTKNGTSRDVPL 240

Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295
                 LL                 K N+  F + ++    + G+    + H  R  + T
Sbjct: 241 TTKARALL------DLLPKREGLLVKHNSNSFRLLWQRNLKRVGLAGAFTFHDSRHEAIT 294

Query: 296 ISAD-AGATAHELMATYGWKTV 316
              +        L    G KT+
Sbjct: 295 CFVNKQKLPVEILAKLTGHKTI 316


>gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus
           pneumoniae G54]
 gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus
           pneumoniae G54]
          Length = 377

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 108/362 (29%), Gaps = 56/362 (15%)

Query: 14  ERTRHGKIIYYFRKGH-------GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
            + + G  +     G         R +R  Y  +   I A     +    +R Y      
Sbjct: 4   RKGKDGNWVVDISNGFDPITLKQRRLVRKGYKTKKEAIEAEXYLRSVELKERFYG----- 58

Query: 67  KPTTLKWLISEYRKSAHWGSLAVNSRI----SFESYFDQ---IIRKSGDFDYRKIT--TK 117
              T+  L    ++         +       ++  +      ++   G   Y  I    +
Sbjct: 59  AKITISILYELLKEEDSINHRKASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFRE 118

Query: 118 HIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
           H+R  V      P   ++  + +  ++ +F   +R+ Y + NP   +++   +   ++ W
Sbjct: 119 HLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFW 178

Query: 175 TKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230
           T ++ Q+F + +  E    +L F  L ++GLR  ++     Q +  +  +I   K+    
Sbjct: 179 TVKEFQKFLTLFEPEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFSSNTIHITKSVYVN 238

Query: 231 -------------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265
                                      +          L   T          N    + 
Sbjct: 239 KGVTHISTTKTKAGTRRIVINKKLSQELQDWEKRQKHLLEQFTNNSLTLQVFQNSPITIT 298

Query: 266 ATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322
                  +K    +         H  R   A++  + G     +    G  ++    +TY
Sbjct: 299 KNAIEKQYKKIIERDSTLKKIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTY 358

Query: 323 TK 324
           + 
Sbjct: 359 SH 360


>gi|167921000|ref|ZP_02508091.1| putative bacteriophage integrase [Burkholderia pseudomallei BCC215]
          Length = 222

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 56/218 (25%), Gaps = 15/218 (6%)

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWSEG 189
            + L  +     +   +                  E    W        +       +  
Sbjct: 2   KRELRLLSAAINFVRTEHDYPELANPVQSLGLDGGESRVRWISRSEATALILAAGAAARQ 61

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLL 245
              R      L +G R ++        +       +      K G    V L  G +  L
Sbjct: 62  PHLRNFVRLALSTGCRKNELLALEWHRVDFERSHFRLECEHTKNGKRRLVPLNSGALLAL 121

Query: 246 AMTPIGKETFFINNDKQKMNATQ-----FSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299
                        ++    +++          F A   +AG+     H +R   A+    
Sbjct: 122 RDQRDWVARHCAGSEWVFASSSGRRVGNLQKGFVAACARAGIENFRIHDLRHTFASWLVM 181

Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336
            G + + +    G  ++  AE Y   + D  R  ++  
Sbjct: 182 EGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKL 219


>gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter
           concisus 13826]
 gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter
           concisus 13826]
          Length = 329

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 85/297 (28%), Gaps = 49/297 (16%)

Query: 76  SEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKITTKHIR--SGVE 124
             +         ++N+  ++ +  D  +             +   + IT   I       
Sbjct: 18  DSFISYNKIADKSINTINTYRNCLDGFVEFCYENNDVISFNNLSQKHITDYFIWLDDLYR 77

Query: 125 SRKHTPSSAI----------QFLTSMRVLFKWAV-------------RQEYVAINPCLSV 161
            ++H  S+             +LT +++ FK+                   +A       
Sbjct: 78  KKQHKKSATRAKSISSSTKISYLTILKIFFKYITNNNDKLIDLEKILDNYKIAKKKVNKF 137

Query: 162 ERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218
           E   +++E  +     + +   + +  +++  +  L  + +L SGLR S++        Q
Sbjct: 138 ENFMKESERDKILDYVENRLVKKPEYRYNKNYRDSLLIKLMLKSGLRISEALNLKFCDFQ 197

Query: 219 NNIFSIKT----------QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
            +                 +T  I    +   F +LL++       F      + ++   
Sbjct: 198 ESDDGEFYDINILAKGGEYQTAYIAKSYIKADFERLLSINLPENYIFTSGCSDKPISRQN 257

Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323
                     K G+   +  H +R   A    +       +      K +     Y 
Sbjct: 258 VYSLLARIYRKCGIVNKRGCHILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYA 314


>gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01]
 gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01]
          Length = 340

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 95/336 (28%), Gaps = 35/336 (10%)

Query: 12  TKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67
            ++     K ++    Y +  +G+RIR           A+          + ++   + +
Sbjct: 3   VRKLDDGNKKLWMCECYPQGRNGKRIRKR-FATKGEALAFEKFTMQEVDDKPWLGD-KVE 60

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126
             +L  +I  + +  H  SLA + + ++      I    GD  Y K+T+         R 
Sbjct: 61  RKSLLDMIDLW-QERHGQSLAHS-KYTYNK-LKVIGLAMGDPLYDKLTSSMFTEYRTRRL 117

Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173
                       K T  +       +  +     R  E+   NP   V + +   + +  
Sbjct: 118 AGEVADLQGKKAKVTFRTCNNEQDLLNAVIVELKRMGEWKGENPLQQVRQFRLHEQEMEF 177

Query: 174 WTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
            T E+MQ                   +  L +G R  +S       L     +    K  
Sbjct: 178 LTIEEMQHLIAKAEAHEFHGDLHKVIKLCLATGGRFKESATLTGAQLTKYKVTFTKTKGK 237

Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290
              +V +      ++     G       +   +          +  A         H +R
Sbjct: 238 KNRSVPISPELYDVIYKEGSGPLFSIGYSTVYRFIVKHIPRLSQQAA---------HVLR 288

Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
              A+     G     L    G   + Q   Y   A
Sbjct: 289 HTFASYYMMNGGNIIALQRILGHSDIKQTMRYAHLA 324


>gi|324018392|gb|EGB87611.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 117-3]
          Length = 391

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 29/283 (10%)

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           T+K  + EY +      L+ ++   ++      +         ++T   +++ ++S+K T
Sbjct: 91  TVKMYLDEYLEICETRKLSPSTIGGYKK-CRSALASLHICPASELTPAILKAWIQSQKTT 149

Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188
             +    L+ +R     AV    + INP   V   + +++     +   +        + 
Sbjct: 150 LKTIRNQLSFLRSALDEAVTDGVLQINPVSLVTASRYQSDKSEAESSYVVDPLSPAEVDA 209

Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----------- 231
                   Q    F F +++GLR S+ C    + +     +   Q               
Sbjct: 210 LLAAAGNKQWENLFRFAIHTGLRSSELCALRWRDIDFVGKTAHVQNASVVGVIKGTKTKA 269

Query: 232 -IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-------SIWFKAKATKAGVN 283
               VEL +  M  L               +       +          +     KAG+ 
Sbjct: 270 GTRKVELNEEAMAALTNQKPFTFMKDATVFEDPKTNKPWASADAIRKKAWVPTLRKAGIR 329

Query: 284 KS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324
               +  R   AT     G     L A  G K  +     Y +
Sbjct: 330 YRNPYQTRHTFATSHISRGTNLFWLAAQMGHKGPEMLFRHYGR 372


>gi|296102051|ref|YP_003612197.1| integrase family protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056510|gb|ADF61248.1| integrase family protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 387

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 103/373 (27%), Gaps = 35/373 (9%)

Query: 9   PFVTKERTRHGKI--IYYFRKGHGR----RIRLPYPHESTFIPAYMSALT-------GST 55
             ++   +  G +  +++FR    +     + L    + T   A             G  
Sbjct: 6   RGLSVRVSTSGTVSFVFFFRHSGRQSAPVWMTLGKYPDMTLKQAREKRDECRGWLSQGLD 65

Query: 56  PKREYINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113
           P+ E   +      P T+K  I  +  +         +   +  Y   I    G F   K
Sbjct: 66  PRIENKLTKESLFTPVTVKNAIDYWFDNYAREKRKE-TVRLYRRYEKYIFPYIGGFPVEK 124

Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
                     +  +K  P  +   L  ++ +FK+   ++YV  N    +          +
Sbjct: 125 CGLSDWIKCFDRIKKIAPVQSAAMLIELKQIFKYCRVRQYVRCNVLDDLSPGDIGKYQNK 184

Query: 173 PWT----------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222
                               K      +  +      L  G R S++  +       + +
Sbjct: 185 RERLLEESYVADLWGVYFHGKGKTRVMNYKKRMAILCLVFGCRLSEARLSTWDEWDFDKW 244

Query: 223 SIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA- 277
                K        I   +P    + +       +       + K ++T  ++       
Sbjct: 245 IWTVPKEHSKNGEEIIRPVPQKMRQWIVNLHEETKRRGYIIGELKSDSTVSTMGCTNFTS 304

Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK- 334
            K     S H +R+  +T   D G     +    G      A  Y +     + +  +  
Sbjct: 305 LKHEKRWSLHDLRRTFSTSLNDMGVDFIVVEQLLGHTIKGVAGIYNRSKYIPQKQEALDR 364

Query: 335 NSRRISSVVDSDD 347
               +  +V  ++
Sbjct: 365 WVDYLDGLVGEEN 377


>gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822]
 gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822]
          Length = 338

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 85/296 (28%), Gaps = 53/296 (17%)

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR----KHTPSSAIQFLTSMR 141
           A ++  ++ +   Q +          +  T   I S  +      K+ P+S    LT +R
Sbjct: 30  ADDTLKTYSAALKQFLTWCKIKAISPMCATEGTICSYRQYLLKTKKYKPASVALKLTVVR 89

Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPR 193
             +  A +Q ++A NP   V+ P +  +        D+ + K               + R
Sbjct: 90  RFYTMATKQGFIAANPATDVKPPTQSYDPATHNNYLDLTEAKQLIESLPNDDSLPSLRDR 149

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--ITVELPDGFMKLLAMT--- 248
              E +++ G R  +  R  V  +      +     G      V L     +LL      
Sbjct: 150 ALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSRRIVPLTPDLAQLLQKYLKA 209

Query: 249 ----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--------------- 283
                          T    N   ++     +          G                 
Sbjct: 210 RKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKINGWKNNNLDEHQVDHDDFD 269

Query: 284 ---------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
                     SAH +R    T++  AG +  ++    G +  +    Y    DR R
Sbjct: 270 DLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDRWR 325


>gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136]
          Length = 260

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 2/129 (1%)

Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263
           +  +       +    +   +         +      +  L     +  +       +  
Sbjct: 122 MERAKRVYEQDEMANLSPVWLPDAYATKNPSAGKSWPWFWLFPADKLATDPRSGTLRRHH 181

Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
            +  +        A +AG+    +AH +R   AT     G     +    G   V   E 
Sbjct: 182 SHEQRLGRALSLAAKRAGLAKKVTAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEI 241

Query: 322 YTKGADRIR 330
           YT+ A  +R
Sbjct: 242 YTQLARAMR 250


>gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017]
 gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 101/305 (33%), Gaps = 35/305 (11%)

Query: 50  ALTGSTPKREYINSPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105
           A   +TP     +  +   +T   L    + E+ +S     ++ N+R ++E    Q +  
Sbjct: 12  ADQAATPIDAARSRTQPPKSTPADLRRTRVEEFMRS---REISSNTRKAYERDLKQFMD- 67

Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAIN 156
             D  + +I+ + +       K  P         ++  + L +++  FKW   ++Y+  +
Sbjct: 68  WTDKGWHEISARDLDRYKNHLKVEPNQRGQLRKNATINRNLAALQSFFKWLTVRDYITKD 127

Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAG 213
           P L +E+ K      + ++++++        +    +    A   L+  GLR S+  R  
Sbjct: 128 PTLLLEKLKADPVLPQEFSQDEVDNLYQAICDRGFHTFRDRALLHLIDHGLRASEIHRLN 187

Query: 214 VQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTPIGKETFFINN 259
           V         I+  K  +                  +  +    +L        +   N+
Sbjct: 188 VGDYDGQRIIIRVAKADSVGTVPLLKKARKAIDQYKQWREQQGDVLGNDSPLFVSHSNNS 247

Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318
             Q++        FKA A  A V     H  R   AT        +          +   
Sbjct: 248 KGQRLQYWGIYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSVLARRITRHTSEQS 307

Query: 319 AETYT 323
              Y+
Sbjct: 308 FVRYS 312


>gi|157419701|gb|ABV55390.1| site-specific recombinase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 403

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 109/371 (29%), Gaps = 48/371 (12%)

Query: 1   MTPSLRLP-PFVTKERTRHGKIIYYFRKG----HGRRIRLP------YPHESTFIPAYMS 49
           M          V       GKI Y    G     G+R++             T   AY  
Sbjct: 5   MATKSSKKYKGVYC--DNKGKIFYQIDLGIDPVTGKRVQKKARKNQYGKTFETMKEAYDE 62

Query: 50  ALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108
            +         ++       T +  +++ Y ++      +V +  +   +    I+  G 
Sbjct: 63  LVRIKYEFANKVSL-ENYNMTFENYMNKIYLRAYKQKVQSV-TYKTALPHHKLFIQYFGL 120

Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166
              + IT +   +        ++ + A    +  +    +A R  Y++  PC +++ P+ 
Sbjct: 121 KPLKAITPRDCEAFRLHIIENYSENYAKNLWSRFKACMGYAERLGYISNMPCKALDNPRG 180

Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--- 219
           K      WT  + Q F         E  Q   A      +G+R S+      + +     
Sbjct: 181 KHPETPFWTYAEFQTFIKSFDLHDYEELQRFTAIWLYYMTGVRVSEGLSLCWEDIDFDKK 240

Query: 220 ---------------NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--- 261
                               +T+       +EL D  +++L +    +      +     
Sbjct: 241 FLKVHTTLEKDENGNWYRKDQTKTPAGERLIELDDITIEVLQVWRKNQFANQDTDFIISR 300

Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD-AGATAHELMATYGWKTVD 317
                  +      K KA + GV   +  G+R   A+   +        +    G     
Sbjct: 301 FGDPFCKSTICRIIKRKAQQVGVPVITGKGLRHSHASYLINVLKKDILYVARRMGHADKS 360

Query: 318 QA-ETYTKGAD 327
               TY+   +
Sbjct: 361 TTLNTYSHWFN 371


>gi|316934638|ref|YP_004109620.1| integrase family protein [Rhodopseudomonas palustris DX-1]
 gi|315602352|gb|ADU44887.1| integrase family protein [Rhodopseudomonas palustris DX-1]
          Length = 418

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 101/343 (29%), Gaps = 33/343 (9%)

Query: 25  FRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPRK--KPTTLKWLISEYRKS 81
              G   R  +         + A  +   G +P  E     R+  +  +      ++  +
Sbjct: 50  VYLGKYGRDGISLARARELCMDARRAVSEGRSPAIEKQREKRRIKEAKSFGEFGEKWLVN 109

Query: 82  AHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138
           A    +A ++R    S F++ ++    +    +IT   +R+          P++AI    
Sbjct: 110 A---PMADSTRAMRRSIFERELLPVWRNRLLTEITPDDLRAHCVKIVDRGAPATAIHVRD 166

Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----R 193
            ++ ++ +A+       NP   VE     T   +  +    +         +       R
Sbjct: 167 ILKQIYGFAILHGEKVANPADDVEPASIATFAPKDRSLSPTEIRIMLSQLENVATLPTIR 226

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGK 252
           L  +  L + +R S+   A    +          K     +         + L +    K
Sbjct: 227 LGMKLYLLTMVRKSELQDATWDEVDFENAVWTIPKERMKRSKAHNVYLSRQTLDIMIALK 286

Query: 253 ETFFINNDKQKMNATQ-----------FSIWFKAKATKAGVNK---SAHGVRKFSATISA 298
                +                      +     +A K G+     + H +R+  +T+  
Sbjct: 287 TCAGNSRYLLPSRYDADAPMSRATFNRVTYAVVEQAKKEGLPLEPFTVHDLRRTGSTLLN 346

Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKG---ADRIRLGIKNSR 337
           + G  +  +      +    +   Y K      R  +  + S 
Sbjct: 347 EFGFNSDWIEKCLAHEDGRSSRGVYNKAEYEVQRRHMMQEWSD 389


>gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 407

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 68/256 (26%), Gaps = 17/256 (6%)

Query: 90  NSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---- 139
            +  +     + +           D    ++T   I+                + +    
Sbjct: 131 ATYRARVRARNHVAAFIKSFYRRSDMSMLELTPDFIKEFAAYLSTEAGLRNGSIWANCMW 190

Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAF 196
           ++ +   A     +  NP +         +     T+++++   +     S+    R  F
Sbjct: 191 LKGVVMKAHYNGLIPRNPFIQF-HISPNVKEREYLTEDELKAVMTHEFADSKLAYIRDIF 249

Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMTPIGKETF 255
            F  ++ L   D       ++                 V      + + L +    +   
Sbjct: 250 IFASFTALSFVDIQELTNDNIVEVNGEKWILSKRHKTKVAFQVKLLDIPLQIVERYRPMQ 309

Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313
             N     +N        K    + G+ KS   H  R   AT++   G     +    G 
Sbjct: 310 KDNRIFPDLNYWSICKPLKRMIRECGITKSISFHCSRHGFATLALSKGMPIESVSRVLGH 369

Query: 314 KTVDQAETYTKGADRI 329
             +   + Y K   + 
Sbjct: 370 TNIVTTQLYAKITTQK 385


>gi|218282008|ref|ZP_03488320.1| hypothetical protein EUBIFOR_00889 [Eubacterium biforme DSM 3989]
 gi|218216995|gb|EEC90533.1| hypothetical protein EUBIFOR_00889 [Eubacterium biforme DSM 3989]
          Length = 453

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 98/397 (24%), Gaps = 80/397 (20%)

Query: 11  VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70
           + K + ++  + YY  K   ++ +              + +      R +I       TT
Sbjct: 7   IQKRKDKYNVVYYYADKYGKQKQKWESFRTLREAKKRKAEVELQQANRTFIAPS---TTT 63

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129
           L      Y         ++++     + F   I    G +   +I    I     + K +
Sbjct: 64  LNEFWPRYVDLYGCNKWSISTMEKNTALFTTYISPYLGHYKLDEIRPITIEQYYANLKES 123

Query: 130 PSSAIQ----------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
            ++                 +R  F  AV+ EY++ NP L V+ PK   E    WT   +
Sbjct: 124 ENTKKTGKVSTRVVAEVHRILRCTFNVAVKWEYISNNPFLKVDTPKHDYEKREIWTANQI 183

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            +      E  +  +A +      LR  +       ++  +        T   I  +L  
Sbjct: 184 AKALEV-CEDPKLSIAIQLAFACSLRMGEVLGLTWDNVHISEDDFACGDTHIYIKQQLER 242

Query: 240 GFMKLLAMTPIGKETFFINNDKQK--------------------MNATQFSIWFKAKAT- 278
                +         F     ++K                          + + K     
Sbjct: 243 ARTDAIEKLNNKDVLFIFPQFEKKKNATRLILKTPKTDSSVRKIWLPNTLACFLKQWKED 302

Query: 279 -----------------------------------------KAGVNK-SAHGVRKFSATI 296
                                                    +AG+     H +R  S T 
Sbjct: 303 QSKYKEAYGDAYHDYNLVICQPNGIPCDGSIIRKGLSKLEKEAGLPHVVFHSLRHTSTTY 362

Query: 297 -SADAGATAHELMATYGWKTVDQAE-TYTKGADRIRL 331
                           G    D     Y+   D  R 
Sbjct: 363 KLKLNNGDIKATQGDTGHSQADMVMDLYSHILDEDRR 399


>gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 306

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 83/288 (28%), Gaps = 24/288 (8%)

Query: 65  RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124
           RK+         E+ +    G++   +   ++  +  +   + +    ++T K+ ++ + 
Sbjct: 3   RKRKIVFHEYFKEWFELYKLGAVRDVTLRKYDLTWRHLKHLAPNLTLDQLTKKNYQALLN 62

Query: 125 SRKHTPSSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182
               +            ++     A  +  +  +P   V     K +  +          
Sbjct: 63  QFAQSHEKQTTLDFHHLVKGAILEAYDEGLIDRDPTRKVVIKGVKGKIKKAKYLNQEDLH 122

Query: 183 KSFWSEGSQPRLAFEFLLY----SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------- 230
           K       Q  +++++L+     +GLR S++          +   +   KT         
Sbjct: 123 KLLNQLHLQTEISYDWLILLVAKTGLRFSEALGVTPSDFNFSQHMLSINKTWDYKKDEGG 182

Query: 231 --------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282
                   ++  + L                       + +++ +  +        + G+
Sbjct: 183 FVPTKNASSVRKLRLDWQLTLQFQQLIQNYPQQKPIFVQGRIHNSTVNQRLAKLCQQTGI 242

Query: 283 N-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADR 328
              + H +R   A++    G +   +    G   +   +  Y      
Sbjct: 243 PEITIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQKTYLHIIQE 290


>gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
 gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC
           15579]
          Length = 308

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 26/274 (9%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSG---VES 125
           +  +  +Y            +  S E +  ++ I   + D + +++T + I      +  
Sbjct: 24  VGEIYGDYLNYCTSIGQREKTIESKEKFGKYELIKVVNLDSNIKELTKEKIEKHIINMRK 83

Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185
             +  ++   ++  MR    +     Y+        + P    E    +T+E++ +    
Sbjct: 84  EGYKGNTYQTYVIKMRAFLSYCFNNNYLTKFTV---KIPNILLEKKEVYTEEEVIKLLKK 140

Query: 186 WSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239
            S  +      +      FLL +G R        V+ +  +  SI  +   T   + +P 
Sbjct: 141 PSINTCLVGDFRSWAICSFLLSTGCRAETLLNVHVEDVNFSTDSILFRHMKTKRQITVPL 200

Query: 240 GFMKLLAMTPIGKETFFINNDK-------QKMNATQFSIWFKAKATKAGVNKSAHG---V 289
                + +    +       D        +KM         K       V    HG    
Sbjct: 201 SNTLKVNLMEYIQRMGLKQEDYLFPLLNGEKMKYDTCHQNLKNYFKHRNVK--FHGVNTF 258

Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323
           R   AT++   GA  + +    G   +   E Y 
Sbjct: 259 RNTFATMALKNGAGIYLIQKCLGHADIKMTERYI 292


>gi|146329800|ref|YP_001209933.1| integrase A2 [Dichelobacter nodosus VCS1703A]
 gi|146233270|gb|ABQ14248.1| integrase A2 [Dichelobacter nodosus VCS1703A]
          Length = 401

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 112/364 (30%), Gaps = 30/364 (8%)

Query: 10  FVTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALT-------------- 52
            ++ + T  G   +   Y+  G  R + L      +   A   AL               
Sbjct: 35  GLSLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSIEAARGEALELRYHLRQGLDPLAE 94

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDY 111
               +  Y+   + +  T +++  E+ +                +  +Q +    G    
Sbjct: 95  RKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNEKHAQQVITTLEQFVFPFIGKKPI 154

Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171
            +I+   +   +E     P +A +    +R +F +A++ + ++ NP +++ +  R T   
Sbjct: 155 SRISPPELLKVMEKLYDRPETASRVKQRIRAVFDYAIQTDRLSRNPAIALPKIFRSTIAK 214

Query: 172 RPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
           +P              +     +  LA   L+ +  R  +      Q LQ N + I  ++
Sbjct: 215 QPSLPARELGIFFKQLDTYGNPKTALALRLLILTMTRSGELRFGQWQELQGNEWHIPAER 274

Query: 229 TGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285
                   +P  D  +++L      +            N             + G     
Sbjct: 275 MKMNRPHIVPLSDWALEILDELRSLRRNNSPYFVTGNRNTPLSDTTLSLAMKRLGYAGRA 334

Query: 286 -AHGVRKFSATISADAG-ATAHELMATYGWKTVDQAE-TYTKG---ADRIRLGIKNSRRI 339
             HG R  ++T   ++G      +         +     Y +     +R R+    +  I
Sbjct: 335 VPHGFRATASTAMNESGLWNPDAIERQLAHTDENAVRAAYNRAEYLEERHRMMQWWADYI 394

Query: 340 SSVV 343
              +
Sbjct: 395 RKKI 398


>gi|145225222|ref|YP_001135900.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
 gi|145217708|gb|ABP47112.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK]
          Length = 637

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 91/360 (25%), Gaps = 51/360 (14%)

Query: 10  FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69
            V +ERT  G   Y       R+I        T     ++ALT               P 
Sbjct: 160 HVRQERTGRGAKHYRSTTHSARQILFHLGILDTQARPAVTALTLE-------QRMVDVPV 212

Query: 70  TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK 127
            L+     Y     + +    +  S  +      R     D     +     R  +E   
Sbjct: 213 ALRPAFVAYLN-RKYATCVPKTVSSLATRLAHFGRYLAAADPSLTSLNQLDRRRHIEPFI 271

Query: 128 HTPSSAIQ-----------FLTSMRVLFKWAVRQEYVAINPCLSVER------PKRKTEG 170
            + ++A              +  +  +  +         +             P+     
Sbjct: 272 TSLTTATNSVTGEPITVADRIRCIHAVGNFLAEITEWGWDDAPPRRLIFRTDLPRPPRCL 331

Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQ 227
            R    +  ++  +     S  RLA + LL     GLR  +     +  +          
Sbjct: 332 PRYLPVDSDRK-LTAALAKSPYRLAADALLVQRACGLRIGELLDLELDCIHEIPGQGSWL 390

Query: 228 KTG-------------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268
           K                                  ++         F   +  ++++   
Sbjct: 391 KVPLGKLNSERMIPVDDEVLTLVDRITTTRSSGRPMIHPRTGAPADFLFTHHGKRLSQNA 450

Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327
                   A  A + + + H +R   AT   +AG +   LMA  G  +   +  Y    D
Sbjct: 451 VREELNRAAQAASLGHITPHQLRHTYATALINAGVSLQALMALLGHVSTQMSLRYAHLFD 510


>gi|281178388|dbj|BAI54718.1| phage integrase [Escherichia coli SE15]
          Length = 391

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 86/368 (23%), Gaps = 36/368 (9%)

Query: 10  FVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE------- 59
            +  E   +GK  + +R    G      L          A            +       
Sbjct: 24  GLYLEVKPNGKKAWRYRFKLNGKSSMFALGEYPTVKLAEAREKCEQARKQVADGVSPTQA 83

Query: 60  ----YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKI 114
                I        T + +  E+ +   W  +   ++       ++++    G    R+I
Sbjct: 84  RQLDKIRKVNDASNTFELIAKEWLQMKDWAGI---TKTRRLDMLERVVFPAIGKLPVREI 140

Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGI 171
           T  HI   ++   ++  P+ A +   ++  +F+ AV       +P     +         
Sbjct: 141 TPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATLRADSDPVWPVRKALPANKTQH 200

Query: 172 RPWTKEDMQQFKSFWSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226
           +               + S+         +            +     +   +N      
Sbjct: 201 KQALNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLARPAEATEAEWTEFNLDNALWTIP 260

Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKATKAGV 282
                     +     + + M    +                         +      G 
Sbjct: 261 AARMKARREHVIPLPFQAVKMLRTLQGLTGHRQHLFPGRDNPLGPMTSHSLRQLLKSLGW 320

Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGA---DRIRLGIKNS 336
               S H  R   +T   + G     + A       +     Y       +R  +  + +
Sbjct: 321 SGTYSPHATRTTGSTRLNELGYRPDAIEAQLAHADTNNVRRTYNHATYLDERKVMMQEWA 380

Query: 337 RRISSVVD 344
             +   V 
Sbjct: 381 DMLDKWVA 388


>gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 399

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 95/370 (25%), Gaps = 59/370 (15%)

Query: 13  KERTRHGKIIYYFRKGHGRRIRL---------PYPHESTFIPAYMSALTGSTPKREYINS 63
           + + + G+  + +    G+   +         P P      P+                 
Sbjct: 17  EYQRKDGRYRFRYIDEDGKEKNVYSWRLDKNDPMPKGKKREPSLREKEKQIEADLFDRIV 76

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSG 122
                 T+  L+ +Y        +  N+   +++  + + ++  G+    K+     ++ 
Sbjct: 77  TNGGNYTVLELVEKYVSLK--TGVRHNTVAGYKTVINMLKKESFGNLRIDKVRLSDAKAW 134

Query: 123 VESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTK 176
           +   +       SS       +R  F+ AV  + +  NP            +      T+
Sbjct: 135 LIKLQQIDGRGYSSIHSIRGVLRPAFQMAVDDDLLRKNPFEFELASVIVNDSVTREAITR 194

Query: 177 EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233
           +  +    F  E    S+   A   L ++GLR S+ C   V  ++     IK        
Sbjct: 195 KQQRDLLKFIQEDKHFSRYYDAIYILFHTGLRISEFCGLTVSEIEFGEMRIKVDHQLQRT 254

Query: 234 TVELPD---------------------GFMKLLAMTPIGKETFF-------------INN 259
                                       F +++A     K                    
Sbjct: 255 AQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAGFLFLDKNDMP 314

Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316
                         +       +     + H  R    +  A +G     L    G   +
Sbjct: 315 MVALHWEKYLEHIIQKYNRIYRIQMPKVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADI 374

Query: 317 DQA-ETYTKG 325
                TYT  
Sbjct: 375 SVTLNTYTHV 384


>gi|227508549|ref|ZP_03938598.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191881|gb|EEI71948.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 305

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 79/287 (27%), Gaps = 24/287 (8%)

Query: 66  KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
                L     ++       ++   +   +E  + QI+  + D    +++    +  +  
Sbjct: 2   ASDIKLHRYFQDWMNLYKKDAVREVTYRKYEMTYRQIVSLAPDLRMCELSRLTYQKLLND 61

Query: 126 RKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179
              T              +S+    +  + +        +  ++P           +  +
Sbjct: 62  YAETHERQTVMDFHRHIKSSLIDALEEDILERDPTRKAIIKGKKPGPHKTKFLNQHEVQL 121

Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHLQNNIFS 223
                    G         +  +GLR S+                +      +       
Sbjct: 122 MLDSLSLDAGVNWDYFILLITKTGLRFSEALAVTPNDFDFARQTLNINKTWDYKSRQAGF 181

Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283
             T+   ++  ++L    +   +              + K+     + + +    K+G+ 
Sbjct: 182 APTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIFVRSKVYNDTINHYLERLCKKSGIP 241

Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
             S HG+R   A++   AG +   +    G   ++   +TY      
Sbjct: 242 IISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQQTYLHIIQE 288


>gi|331683085|ref|ZP_08383686.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
 gi|331079300|gb|EGI50497.1| putative lambdoid prophage Qin defective integrase [Escherichia
           coli H299]
          Length = 426

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 110/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 1   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 57

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 58  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 116

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 117 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 176

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 177 GYLADNPFKGISPLKESRTIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 235

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 236 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 295

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 296 HIIDVYLREYGRTEKHKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 355

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 356 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 406


>gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5]
 gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5]
          Length = 397

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 85/336 (25%), Gaps = 40/336 (11%)

Query: 28  GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87
           G  + I+  +         + + L                   L   +  + K+   G +
Sbjct: 48  GEWKNIKRRFNGTKKEANLFATGLELEKDNEGLTKD-----WKLVEYMEMFFKTFKKGKV 102

Query: 88  AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFK 145
              S   + +    +    G    +K+     +  +         S+ +     ++V   
Sbjct: 103 NAGSEKLYLNMIKDVKTHFGKLLLKKLDPLKYQLFINKLCEDRATSTVLSMHKRLKVAIN 162

Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPR-LAFEFLLYS 202
            AV+   +  NPC   E         +       D+ + ++       PR  A    +++
Sbjct: 163 HAVKTGVLTRNPCTGTEIAGNDKNARKTKFLNTSDILKIENVVKLEWHPRNCAIVIAIHT 222

Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK------------------- 243
           G R ++        +  +   I   KT  I                              
Sbjct: 223 GARYAEIIGLTWDDIDFDNSLITINKTWDIHFSHDFSTTKNESSNRIIYIDDTLKNYLKT 282

Query: 244 ---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293
                    LL              +   +     +++ K    +  V K + H +R   
Sbjct: 283 YRTKQKELFLLKGISNKLNLVVSQEETHPLLNKSINVYLKNTCDQLDVPKITLHALRHSH 342

Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328
                +AG     +    G   +      YT  +  
Sbjct: 343 TVQLIEAGVDIKYISLRLGHADISTTLSIYTHISKE 378


>gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361]
 gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 90/300 (30%), Gaps = 26/300 (8%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWG---SLAVNSRISF---ESYFDQIIR--- 104
           +T  +E +    +   T         +         +   +  S+     +    I    
Sbjct: 68  ATDIKELLQGSMQSQITFLERYDRMVEEMKQKVGVEIKATALNSYFTIRKHLRAFIEEKF 127

Query: 105 KSGDFDYRKITTKHI----RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160
            + D  + +I  + +       V    H+     +   +++ + + A R+  +       
Sbjct: 128 HTTDIAFSQIEEEFLDCLQHYSVGELGHSQGHYRKMALAVKKVCRLAYREGLITRQLFAH 187

Query: 161 VERPKRKTEGIRPWTKE-----DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215
           V   + + +  R   +          F+ +  E    R  F F  Y+G+   D      +
Sbjct: 188 VTIERGENKRPRALDRASLDKLQSLTFEPYEVELETARDLFLFACYTGVAYCDMVALSRE 247

Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-- 273
           HL  +       K             +KLL+      E +   +         +S++   
Sbjct: 248 HLFTDDEGALWLKF--RRQKTNTLCRVKLLSEAVRLMERYQSEDRSTLFTPIAYSVYLAQ 305

Query: 274 -KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
            KA   +AG+    SAH  R   AT+   + G     +    G   +   E Y     + 
Sbjct: 306 LKALQLRAGISIPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKK 365


>gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2]
 gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 81/280 (28%), Gaps = 27/280 (9%)

Query: 78  YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR-KHTPSSA 133
           ++K       +  +   +    ++ +      G  D   I    +   + +   +T  + 
Sbjct: 119 FKKYCEQKDYSKVTVDHYVKQSERFMDYLISNGISDCHDIDMPAVNGYIRTLAGYTYKTV 178

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF----WS 187
            Q L S+R   ++ + +E +  +        + + +   P  WTK+++            
Sbjct: 179 EQNLCSIRSFLRYLLEKEILKTDLASKTPMIQARKQTRIPSVWTKDELDTLIGAIVRGNP 238

Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ITVELPDGF 241
           +G +           GLR +D               +   ++ T       +  E+    
Sbjct: 239 KGKRDYAIILLACVLGLRVTDIKNLTFDCFHWETKELIFTQSKTRETVTLPLPSEVGWAV 298

Query: 242 MKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVN-----KSAHGVRK 291
           +  L  +    ++  I                     +     A +      +  H +R 
Sbjct: 299 IDYLKYSRPKVDSPIIFVRHLAPFLPFSEKDHLHQIIRDYMRIAHLPTLKKRRGMHSLRH 358

Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331
            +A+   + G     +    G    D    Y K  D  +L
Sbjct: 359 TAASRMLEHGTPLVVISDILGHMDTDSTAVYLK-VDIKKL 397


>gi|218203858|ref|YP_002364713.1| integrase family protein [Cyanothece sp. PCC 8801]
 gi|218169645|gb|ACK68381.1| integrase family protein [Cyanothece sp. PCC 8801]
          Length = 311

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 92/284 (32%), Gaps = 32/284 (11%)

Query: 85  GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR--KHTPSSAIQ 135
            SL   SR++     + I     +        D+ K+T +H  +   +   +H P++A +
Sbjct: 26  RSLNPRSRVTMRGALNAIASLLTNGECDYMTLDWAKLTYQHTSAVQAALLERHAPATAAR 85

Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFW 186
            + ++R + K A R   ++ +   +        E  +                       
Sbjct: 86  MMCALRRVLKEAKRLGLMSGDDYQTAIDLPSIRESRKLRGRALSQDEIRGLMAVCENDPT 145

Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKL 244
           ++G +       L  +GLR +++ +  ++          I   K      V LP+  + +
Sbjct: 146 TQGIRDAALIAILRGAGLRRAEAVKLQLKDFTQEAGSLQIIGGKGDKDRLVYLPESAISI 205

Query: 245 LAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293
           +                          + M++    +  + +A  AGV   S H  R+  
Sbjct: 206 VNRWLEVRGFTPGALLCPIQKGGRIVIRSMSSQSVLLIVQKRAIAAGVESFSPHDFRRTF 265

Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNS 336
            +   DAG     +    G  +      Y +  +   R  ++N 
Sbjct: 266 CSDLLDAGVDIVTVQKLAGHASPVTTAKYDRRGEAVKRRAVQNL 309


>gi|167578815|ref|ZP_02371689.1| hypothetical protein BthaT_11773 [Burkholderia thailandensis TXDOH]
          Length = 399

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 84/319 (26%), Gaps = 31/319 (9%)

Query: 54  STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112
            + +       +     +   +  + +      LA ++   ++      +    G     
Sbjct: 67  ESKRIAQFVERQGDALMVGAFLDTWLERQE-DVLAASTIEGYKKIIKGTLKPAFGHLVMS 125

Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172
            +   H+R     +K         L+  R     AV+ E V  N        +    G  
Sbjct: 126 DVRRSHVREWASKQKFGNKRMTNVLSVFRAALAEAVQDEIVETNVLYGWTYQRNDAPGRD 185

Query: 173 PWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230
                   + ++        Q +  F+F  ++GLR S+        +      ++ Q+  
Sbjct: 186 DDVDPFTAEEQAAILGAMVGQEKNLFQFAFWTGLRTSELIALQWSDVDWERGIVRVQRAR 245

Query: 231 -----------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA------T 267
                            +   V+L +  +  L            +               
Sbjct: 246 TRAARVAKKVEDTKTRGSRRNVKLLEPALAALNDQKRFSSLLGGSIFLNPRTGEAWSGDN 305

Query: 268 QFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325
              + +     K A   +  +  R   A++   AG     + +  G  ++    + Y + 
Sbjct: 306 VIWLAWNRAIEKSAARYRRPYQTRHTYASMMLSAGEPPMWVASQMGHISLKMIEQRYGRW 365

Query: 326 ADRIRLGIKNSRRISSVVD 344
                      RR  ++  
Sbjct: 366 I--KDAAPDAGRRAEALFG 382


>gi|23500115|ref|NP_699555.1| phage integrase family site specific recombinase [Brucella suis
           1330]
 gi|254702759|ref|ZP_05164587.1| phage integrase family site specific recombinase [Brucella suis bv.
           3 str. 686]
 gi|260568334|ref|ZP_05838803.1| site-specific recombinase [Brucella suis bv. 4 str. 40]
 gi|261753354|ref|ZP_05997063.1| phage integrase [Brucella suis bv. 3 str. 686]
 gi|23463709|gb|AAN33560.1| site-specific recombinase, phage integrase family [Brucella suis
           1330]
 gi|260154999|gb|EEW90080.1| site-specific recombinase [Brucella suis bv. 4 str. 40]
 gi|261743107|gb|EEY31033.1| phage integrase [Brucella suis bv. 3 str. 686]
          Length = 402

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 28/337 (8%)

Query: 26  RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85
           R G G                 ++A      ++    +  K   T      ++ +     
Sbjct: 54  RYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFGAWAEKWLRGYQ-- 111

Query: 86  SLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142
            ++  +R      +++ +  K G+    +IT + +R+  ++   +  PS+A+     M +
Sbjct: 112 -MSETTRNMRRGTYERDLKPKFGNRKLIEITHEDLRALTDAIVEQGRPSTAVVCREIMML 170

Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-----TKEDMQQFKSFWSEGSQPRLAFE 197
           +F+WA+ +     NP   V          R           M Q+          R A +
Sbjct: 171 VFRWAIERGQKVENPADLVRPSTIAKFEPRDRALTPEEIGLMYQYMERIGTPPSIRAAAK 230

Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLAMTP------- 249
            LL + +R S+   A    +          ++        L     ++L +         
Sbjct: 231 LLLLTMVRKSELTNATWSEINFIDALWTIPKERMKRRNPHLVFLSRQVLEIFTALKTFAG 290

Query: 250 -IGKETFFINNDKQKMNATQFSIWF---KAKATKAGV---NKSAHGVRKFSATISADAGA 302
                     +    M++   +         A K G        H +R+ ++T+  +AG 
Sbjct: 291 GSEYVLPSRYDSDLPMSSATLNQVLTLTYRLAQKEGQSLGKFGPHDLRRTASTLLHEAGY 350

Query: 303 TAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSR 337
               +      +       Y K    D+ R  +++  
Sbjct: 351 NTDWIEKCLAHEQKGVRAVYNKAEYRDQRRAMLQDWA 387


>gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14]
          Length = 397

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/377 (11%), Positives = 88/377 (23%), Gaps = 59/377 (15%)

Query: 9   PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68
            +  K     GK  + +         +P           ++        ++ ++      
Sbjct: 24  RYAYKYIDTFGKPQFVYSWK-----LVPTDKTPAGKRDDIALREKEKEIQKDLDDGIDHI 78

Query: 69  TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126
                +   Y K      ++   ++   +     +   K G      +     +      
Sbjct: 79  GKKMTVCQLYAKQIRHRANVRHGTKQGRKQLMRILQEDKLGACRIENVKLSDAKEWALRM 138

Query: 127 KHTPS---SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181
           K       +      S++  F  A++ + +             +  TE   P +      
Sbjct: 139 KEKGYGFKTINNHKRSLKAAFYTAIQDDCIRKNPFDFQLNTVLEDDTEPKEPLSPTQEAA 198

Query: 182 FK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229
           F           +       LL +GLR S+ C      +  +   I              
Sbjct: 199 FLSFVQHDKVYQKYYDEIIILLGTGLRISELCGLTEADIDLDKQLIHVDHQLLKIADVGY 258

Query: 230 -----------------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266
                                     +  +       +L               K  +N 
Sbjct: 259 YVETPKTKSGNRVIPMSEKVLEAFQRVLNKRKYAQPVILEGYTKFLFLNRNGLPKVAVNY 318

Query: 267 TQ-FSIWFKAKAT--KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321
              F    +      K  + K  + H +R    T  A+AG     L    G   ++ A  
Sbjct: 319 ESMFRGLVRKYNKTQKVALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMALN 378

Query: 322 Y-------TKGADRIRL 331
           Y       T   +  RL
Sbjct: 379 YYAHTTSETSITEMKRL 395


>gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii
           DSM 18315]
          Length = 425

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 86/309 (27%), Gaps = 24/309 (7%)

Query: 53  GSTPKREYINSPRKKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYFDQIIRK- 105
            +   +       +   TL  L   + +           + ++++         + ++K 
Sbjct: 108 AAADVKNLFQGSMETQMTLLRLFDRHIEETRERIGIDVCASSMSTYHYARKTLGEFVKKK 167

Query: 106 --SGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159
               D  +  +  + IR           ++  ++   L  ++ + + A ++ +      L
Sbjct: 168 YKVKDIAFGALNEQFIREYQSYIEVKCGYSNQTSRHHLALLKRICRIAYKEGFSERYHFL 227

Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219
             + PK+K    +  ++ED ++ +       +  L     L+     + +  A    +  
Sbjct: 228 HFKIPKQKETTPKALSREDFEKLRDLDIPEKRRSLVLTRDLFLFACYAGTAYADTISITR 287

Query: 220 NIFSIKTQKTGT---IITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWF 273
                  + +               +KLL                        +      
Sbjct: 288 ENLYTDDEGSLWLKYRRKKNELKARVKLLPEAIALIEKYRDNSRETLFPNQLYSTLRANM 347

Query: 274 KAKATKAGV--NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330
           K     AG+      H  R   A++   + G     +    G   +   + Y +   +  
Sbjct: 348 KILRVLAGLTTELVYHMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKK- 406

Query: 331 LGIKNSRRI 339
              ++  R 
Sbjct: 407 -LFEDMDRF 414


>gi|163855346|ref|YP_001629644.1| integrase/recombinase [Bordetella petrii DSM 12804]
 gi|163259074|emb|CAP41373.1| integrase/recombinase [Bordetella petrii]
          Length = 402

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 83/280 (29%), Gaps = 25/280 (8%)

Query: 68  PTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE 124
             + + +   + +      +A  S  ++ S     +  +   G  ++R I  +HI S +E
Sbjct: 107 TKSYRQVFEGFLQHLSAQGVAPGSLRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIE 166

Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKE 177
           S    + ++    L  ++ LF++A    +   +   ++   +R+     P       T++
Sbjct: 167 SLAGFSSNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETEK 226

Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGT 231
            +       + G +    F  L   GLR SD       H   +            +    
Sbjct: 227 ILSAIDRSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQQKTKKPVDL 286

Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMN---ATQFSIWFKAKATKAGV------ 282
            I  E+    +  L       E   +            +           +A +      
Sbjct: 287 PIMDEVGWAIIDYLRNGRPHSECPLVFIKHIAPFDGLTSALHQQMLQYLRRADIHVPANK 346

Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
            +  H +R   AT           +  T G   +     Y
Sbjct: 347 PRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGY 386


>gi|163795284|ref|ZP_02189251.1| probable site-specific integrase/recombinase [alpha proteobacterium
           BAL199]
 gi|159179270|gb|EDP63801.1| probable site-specific integrase/recombinase [alpha proteobacterium
           BAL199]
          Length = 335

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 102/318 (32%), Gaps = 18/318 (5%)

Query: 15  RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE-YINSPRKKPTTLKW 73
           R R  +     R+     I             +   +           N       +LK 
Sbjct: 5   RKRGLRYQAMIRRNEHAPIS-RTFANRADAQLWARGIEREMDLGTFRTNDGVPADISLKE 63

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++ Y           + + ++      ++      + + ++  H+    + R  + + A
Sbjct: 64  LLARYVSEVTPRK-KGHVQEAYR-ISRLMLSDLAARNLKDLSPAHLARFRDERLKSGTEA 121

Query: 134 IQF-LTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKE--DMQQFKSFWSE 188
            ++ L  ++ +   A+R+    +  NP   V +PK      R  T         ++    
Sbjct: 122 ARYDLVLIQGVINTAMREWGLDLQQNPVTRVTKPKPVRARERRLTDSELTSIVERAHGRC 181

Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246
           G          + +G+R S+       ++       ++   K G   +V L +  +++L 
Sbjct: 182 GGVLLPTILLAIETGMRRSELLSMTWANVALSAGAVTLPDSKNGKPRSVPLTNEAIQILG 241

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305
             P   +          ++A   ++ +K       + +   H +R  + +   + G    
Sbjct: 242 DLPREADAVL------PISANALALGWKRLMRTCAIADLRFHDLRHEAISRFFEMGLNVP 295

Query: 306 ELMATYGWKTVDQAETYT 323
           E+    G +T  Q   YT
Sbjct: 296 EVALISGHRTPSQLFRYT 313


>gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium]
 gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium]
          Length = 163

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326
                K     AG+ K A  H +R   AT     G     +    G K V     YT   
Sbjct: 104 LQNALKRAVDAAGIVKRANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHVL 163


>gi|309793340|ref|ZP_07687767.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
 gi|308122927|gb|EFO60189.1| site-specific recombinase, phage integrase family [Escherichia coli
           MS 145-7]
          Length = 431

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 110/411 (26%), Gaps = 84/411 (20%)

Query: 5   LRLPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALT--------GST 55
           ++ P  V       GK+  ++  KG   R  L  P  +                   G  
Sbjct: 6   MKYPTGVE---NHGGKLRIWFVYKGVRVRENLGVPDTAKNRRVAGELRASVCYAIKTGVF 62

Query: 56  PKREYINSPR--------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107
              +   S R        ++  T+K L  ++        +A  S  ++ +    I+   G
Sbjct: 63  DYAKQFPSSRNLEKFGEARQDLTIKELAEKFLA-LKETEVAKTSLNTYRAVIKNILSIIG 121

Query: 108 DFDYRK-ITTKHIRSGVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQ 150
           + +    I  + +    +                    +  +   ++T++  +F++ V  
Sbjct: 122 EKNLASSINKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDN 181

Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210
            Y+A NP   +   K       P ++E+  +         Q +  +   +Y+G+R  + C
Sbjct: 182 GYLADNPFKGISPLKESRSIPDPLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELC 240

Query: 211 RAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFI 257
             G + +     ++  ++                   + L    +  L            
Sbjct: 241 ALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKE 300

Query: 258 N------------------------------NDKQKMNATQFSIWFKAKATKAGVNKS-A 286
           +                              N             + A   +AG+    +
Sbjct: 301 HIIDVHLREYGRTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKS 360

Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336
           +  R   A  S  AGA    +    G        + Y K            
Sbjct: 361 YQSRHTYACWSLTAGANPAFIANQMGHADAQMVFQVYGKWMSENNNAQVAL 411


>gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735]
 gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735]
          Length = 409

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 83/280 (29%), Gaps = 24/280 (8%)

Query: 71  LKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR---KSGDFDYRKITTKHIRSGVE 124
           L  LI E ++S     +   +   +     +  + I+   K  D  + ++T + I    +
Sbjct: 114 LDILIKE-KESHVGIDIKEGAIHGYHSTRIHLQRFIQRKYKVSDLAFSQLTEQFIYDFRQ 172

Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
                      +     T ++ + + A R+           +  K   +  +   +E + 
Sbjct: 173 YFVGECGFQECTFYNAATFLKTVCRLAYREGLADTLLFDKAKISKGDNKLPKALDREALD 232

Query: 181 QFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235
           + K    E         R  F F  Y G    D       HL  +       K       
Sbjct: 233 KLKVLRFEDLEEEMETARDIFLFACYVGAAYCDLMELSKSHLVRDDEGSLWLKFN--RQK 290

Query: 236 ELPDGFMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVR 290
                 +KLL       E F  +  +     +    +    KA   +AG+    + H  R
Sbjct: 291 TGVLCRVKLLPEAIRLIERFHSDERETLLPFIKYKNYQSCLKALRLRAGISFPFTTHTAR 350

Query: 291 KFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRI 329
              AT+   + G     +    G   +   E Y K   + 
Sbjct: 351 HTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQK 390


>gi|304440288|ref|ZP_07400178.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|313888848|ref|ZP_07822509.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|291166665|gb|EFE28711.1| transposase [Filifactor alocis ATCC 35896]
 gi|304371337|gb|EFM24953.1| transposase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|312845217|gb|EFR32617.1| site-specific recombinase, phage integrase family [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 405

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 101/392 (25%), Gaps = 66/392 (16%)

Query: 9   PFVTKERTRHGKIIYYF--------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
            ++ K     G+  + +        R   G+R  +P              +         
Sbjct: 24  RYLYKYVDSFGEPQFIYSWKLVATDRVPAGKRDCVP----------LREKVAELLKDIHD 73

Query: 61  INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHI 119
                 K  TL  L ++  ++A   ++   ++   +   D +   K G      I     
Sbjct: 74  GIDVVGKKMTLCQLYAK--QNAQRPNVKKGTQTGRKYLMDILTKDKLGARSIDSIKPSDA 131

Query: 120 RSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPW 174
           +              +   +  S+R  F  A+  + V  NP            T      
Sbjct: 132 KEWAIRMSEDGYAYQTINNYKRSLRASFYIAIEDDCVRKNPFDFQLNTVIDDDTVPKVAL 191

Query: 175 TKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDS---------------------C 210
           T E  ++  SF       S+       LL +GLR S+                       
Sbjct: 192 TTEQEEKLLSFAKADKTYSKNYDEILILLKTGLRISEFGGLTLPDLDFENRLVKVDHQLL 251

Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--------Q 262
           R             K+ +    +  E    F ++LA     K                  
Sbjct: 252 RDTENGYYIETPKTKSGERQVPMVEEAYQAFQRVLANRKNRKCVVIDGYSNFLFLNGKDY 311

Query: 263 KMNATQFSIWFKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKT 315
              A+ ++   K    K          + + H +R    T  A+AG     L    G   
Sbjct: 312 PKVASDYNGMLKNLVKKYNKYHEDKLPHITPHILRHTFCTNYANAGMNPKALQYIMGHAN 371

Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347
           ++    Y   A       +   R+      + 
Sbjct: 372 INMTLNYYAHATFDSAMAE-MNRLEKKKQQER 402


>gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
 gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM
           18228]
          Length = 219

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 11/203 (5%)

Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-- 192
           ++L +++ + K A+ ++++  +P   +   K+        ++ ++++  +   +  +   
Sbjct: 2   KYLKNLKKIIKTALIKKWITDDPFAEI-HFKQTKCNREFLSENELRKIINKDFDIQRLQT 60

Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-----MKLLA 246
            R  F F  ++GL  +D      +HL          +     T  + D         +L 
Sbjct: 61  VRDIFIFCCFTGLAFTDVKNLKKEHLVQADNGEWWIRKVREKTDNMCDIPLLDIPRLILE 120

Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304
                             +  + + + K  A   G+ K  S H  R   A+++     + 
Sbjct: 121 KYQSNPICNEKGLLLPVPSNQRMNSYLKEIADVCGIQKNLSTHIARHTFASLAIANKVSL 180

Query: 305 HELMATYGWKTVDQAETYTKGAD 327
             +    G   +     Y K  +
Sbjct: 181 ESIAKMLGHTDIRTTRIYAKIMN 203


>gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20]
          Length = 355

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133
           L++E+  S + G L++ ++ ++      +       +  +    +I              
Sbjct: 101 LLAEFL-SVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYIY------------- 146

Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193
              L ++  +            N     + P            E + + +      ++ R
Sbjct: 147 NITLKNISGV------------NQSAGNKLPTHLNNEELEKFLEGIDKIEMSAKVRARNR 194

Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDGFMKLLAMTPI 250
           L  + ++++G+R +++ +  ++               K      V L    ++ L    +
Sbjct: 195 LLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWL 254

Query: 251 GKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
            +   +         N     +         +     AG+ +    AH +R   AT+   
Sbjct: 255 MERELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQ 314

Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335
                  +    G  +++ +  YT   D+ RL    
Sbjct: 315 KRHDLILVQEALGHASLNTSRIYTH-FDKQRLEEAA 349


>gi|305667872|ref|YP_003864346.1| shufflon-specific DNA recombinase [Escherichia coli]
 gi|304655621|emb|CBM42286.1| shufflon-specific DNA recombinase [Escherichia coli]
          Length = 374

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 104/298 (34%), Gaps = 22/298 (7%)

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIR 120
              + +  TL   + +Y K+        + +  +    + I R    +    +ITT  I 
Sbjct: 3   RKIKIRKMTLNRALDKYLKTVSIHK-KGHLQEFYR--VNVIKRHPMAERYMDEITTVDIA 59

Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTE 169
           +  + R          + T ++    L  +  LF   +V      +NP   V +PK  + 
Sbjct: 60  TYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSG 119

Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228
             R  T  + ++  + F  +  Q  + F   L + +R  +      +HL          +
Sbjct: 120 RDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPE 179

Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287
           T   +  ++P           +      IN +     ++ F   ++       +     H
Sbjct: 180 TKNGLPRDVPLSRKA---RNYLQILPQQINGNVFSYTSSGFKSAWRTALLDLKIENLHFH 236

Query: 288 GVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVV 343
            +R  + +   + G     E+ A  G ++++  + YT   A ++   +   R+ +S +
Sbjct: 237 DLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTHLRAYQLVSKLDAKRKQTSKI 294


>gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
 gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis
           RM3268]
          Length = 186

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250
           + RL  + ++Y+G+R  ++     + +         +  G      +      L+     
Sbjct: 24  RNRLIVKIIVYTGIRVGEAINLKRKDIAPEGDLFVIRIRGKGNKYRIVMIKRHLIEEHLN 83

Query: 251 GKETFFINNDKQ--------KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299
             ET F N +           +     S   +     AG+ K    AH +R   AT+   
Sbjct: 84  ALETNFANKEGYLFVTKNGAPLTQAYVSGIVEKILMSAGIRKEKNGAHMLRHTFATMLYK 143

Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341
                  +    G  +++ +  YT   +D++RL  K +     
Sbjct: 144 KQKDLVLVQEALGHASLNTSRIYTHFDSDKLRLAAKVAEEFEE 186


>gi|126657051|ref|ZP_01728222.1| phage integrase [Cyanothece sp. CCY0110]
 gi|126621594|gb|EAZ92304.1| phage integrase [Cyanothece sp. CCY0110]
          Length = 359

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 75/320 (23%), Gaps = 64/320 (20%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR------ 126
           I  Y         + N+  S+              + D++++    +   V         
Sbjct: 31  IQRYLTFLSGTK-SPNTVESYGYGLKAWWEFLQSKNLDWKEVQLTDLEDFVHWLRIGDTS 89

Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC------------------ 158
                     K +  S    LT++   +++    + +                       
Sbjct: 90  NIVSMQPVKAKRSERSINLALTAVTTFYEYHDAHKNIDPKKFDRLITTRGNTRRGLLDGI 149

Query: 159 ---LSVERPKRKTEGIRPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212
                  +   K +  + +      +  +         + +     L  +G+R  +    
Sbjct: 150 SKSKPTRQKLVKLKEPKKFPGCLTDEQVETLVNNCHRLRDKFLILLLNGTGIRVGELLGL 209

Query: 213 GVQHLQNNIFSIKTQKTGT--------------IITVELPDGFMKLLAMTP------IGK 252
             + + +        +                  +  EL   +   L             
Sbjct: 210 QHEDVGDGSDYFIHVRKRRHGNEARAKGQERTIPVIPELLQMYNDYLIYEYPEVESNYVF 269

Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312
              +       M A   +  F   + K G+    H  R   AT    AG     +    G
Sbjct: 270 VNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVYPHLFRHTYATRLLKAGMRVDRVKYLLG 329

Query: 313 WKTVDQA-ETYTKGADRIRL 331
             +V    + Y+   D   L
Sbjct: 330 HASVQTTLDIYSHIIDEADL 349


>gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1]
          Length = 364

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 92/315 (29%), Gaps = 63/315 (20%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSG--------- 122
           L++++       + +V++  ++        R   D   +  ++    +            
Sbjct: 32  LVNDFLGHLADRNFSVHTCRAYAYDLLAFARWLIDEQVELAEVNVDVLLRFLTACREATL 91

Query: 123 -------------VESRKHTPSSAIQFLTSMRVLFKWAVRQ------------------- 150
                          ++ + P++  + L ++  LF +   +                   
Sbjct: 92  PGRPGGNVYSIRDGRNQGYAPATINRRLAAISSLFAFQEMREPDARNPVSGGRSARLRSR 151

Query: 151 -------EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203
                   ++A     S  R + +    R  T+++       +    + R     +L SG
Sbjct: 152 GERSGLLTHIAKPKSRSQLRVREQRRLPRGLTRQESAALLGSF-RSWRDRSIGGLMLMSG 210

Query: 204 LRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFI----- 257
           LR ++     V  +      ++   K     +V +       +    + +          
Sbjct: 211 LRSTEVLSVRVADVDIARRWVRVLGKGSKERSVPIDTDVAGAIQTYLLVERPETDAEALF 270

Query: 258 -----NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311
                 +  Q + A      F+    ++GV+    H +R    T  A+AG     + A  
Sbjct: 271 VVAKGVHRGQPLTAAGLRTVFRYHRERSGVSAGHPHALRHSFGTALAEAGVDLSVIQALM 330

Query: 312 GWKTVDQAETYTKGA 326
           G    D A  Y   A
Sbjct: 331 GHDHADSAAAYIHLA 345


>gi|309702838|emb|CBJ02169.1| phage integrase [Escherichia coli ETEC H10407]
          Length = 390

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 112/370 (30%), Gaps = 43/370 (11%)

Query: 18  HGKIIYYFRKG-HGRRIRL----PYPHESTFIPAYMSALTGST---------PKREYINS 63
            G + + +    +GRR  L          +   A    +               +     
Sbjct: 4   SGTVSFRYDYRINGRRETLVIGQYGRDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIK 63

Query: 64  PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122
             +   T       Y K      LA ++R   ++  D+ I+   G+    +ITT  +R  
Sbjct: 64  KIRGAETFAVHTDSYMKHVI---LAESTRAMKQAVIDRDILPVLGNKMMAEITTSMVRDL 120

Query: 123 VESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
            +        ++A+Q    +  +++ A  + +   NP   ++         R  T    +
Sbjct: 121 CDRIVERGGRATAVQAREIISSVYRHANDRGHGLFNPAADIKPSSIAIFKPRERTLTPEE 180

Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGT 231
               F +          ++A + +L + +R  +   A    +    ++        K   
Sbjct: 181 IGLFFRTLDAIGAMGTMKMALKLVLITMVRKGEFTNATWDEIDFKKWTWTIPSDRMKGSR 240

Query: 232 IITVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283
              + LP     +L    +             N ++ ++    +            +   
Sbjct: 241 AHVIYLPKQAQDILVGLQMCAGGSEYLVPGRYNFRKPLSNAALNSLIDRTVKIINEDGEH 300

Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSR 337
               + H +R+ ++T+  +AG  +  +      +       Y K      R  +  + S 
Sbjct: 301 IQDFTVHDMRRTASTLLHEAGYPSDWIEKALAHEQKGVRAVYNKAEYARQRAYMLQQWSD 360

Query: 338 RISSVVDSDD 347
            I S ++ + 
Sbjct: 361 MIDSWINGEH 370


>gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium]
          Length = 150

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294
               +  + A      +       +  M    F   FK    +AG+ K  + H +R   A
Sbjct: 61  HSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFA 120

Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324
           T    +G     +    G   V     YT 
Sbjct: 121 TALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150


>gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 349

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 86/313 (27%), Gaps = 58/313 (18%)

Query: 74  LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130
           L+ + R        ++ +  ++  +  + I  +G     ++    + + +          
Sbjct: 42  LLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPGQMGQVEVEAFLTDLATRGQVS 101

Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189
             +  Q L ++  L++  +  E   +   +  +RP          + E++ +  +     
Sbjct: 102 AGTQNQALAALLFLYREVLGVELPWMENLVRAKRP---RRIPVVLSAEEVARLLT--MLE 156

Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247
              RL    L  SG+R  +  R  ++ +        ++  K G    V  P      L  
Sbjct: 157 GSCRLMAGLLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQ 216

Query: 248 TPIGKETFFINND---------------------------------------------KQ 262
                      +                                              + 
Sbjct: 217 QRERALLLHAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAARRSVDPRSGRVGRH 276

Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320
            ++        ++   +AG+    + H +R   AT   +AG     +    G K V   +
Sbjct: 277 HVSEEVLQRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQ 336

Query: 321 TYTKGADRIRLGI 333
            Y     R    +
Sbjct: 337 IYAHVLGRGASAV 349


>gi|296445247|ref|ZP_06887206.1| integrase family protein [Methylosinus trichosporium OB3b]
 gi|296257202|gb|EFH04270.1| integrase family protein [Methylosinus trichosporium OB3b]
          Length = 438

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 96/374 (25%), Gaps = 52/374 (13%)

Query: 17  RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK---------------REYI 61
           R     Y F+    +        +     A    L     K               ++  
Sbjct: 42  RSWAFRYRFQGQARKLTFDGCKAKKAEDAAEQLTLARELAKQAMATISRGEDPATKKQEA 101

Query: 62  NSPRKKPTTLKWLISEYRKSAHWGSLAVNSR----ISFESYFDQ-IIRKSGDFDYRKITT 116
                       LI     S        N+R       E   ++ I+          IT 
Sbjct: 102 KRQAAAARPAHDLIENVCVSYIDRQAKPNTREASWREVERILNKEIVPAWRGRRLGDITR 161

Query: 117 KHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174
             I   ++  K  P+   A + L + R +  WA+ +  +  +PC  V+ P  +T   R  
Sbjct: 162 GDIHELLDKIKDRPAPILANRTLAAFRRVCNWAIGRGIIEASPCDRVKAPVAETSRDRVL 221

Query: 175 TKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232
           +  +++     +     P     + LL +G R  +        +          K     
Sbjct: 222 SDNELRLTWGAFDGAGWPFGPIGKLLLLTGARRDEVAHMTWSEVDLAGKLWTIPKERAKN 281

Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT----------- 278
                V L    + +L   P  +                    F                
Sbjct: 282 GAAHEVPLSATAVAILKGLPKIEGGKDAPGYIFTTTGKTPVSGFSKAKDQFDAAILEAMQ 341

Query: 279 ---------KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK-- 324
                    KA    + H +R+  A+  A  G   H + A    ++      A  Y +  
Sbjct: 342 AAAADPETVKAPERWTLHDLRRTCASGMAGLGIAPHVVEAVLNHRSGTIKGVAAVYNRYS 401

Query: 325 GADRIRLGIKNSRR 338
            +   R  +    R
Sbjct: 402 YSAEKRAALDAWAR 415


>gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2]
 gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2]
          Length = 272

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 76/259 (29%), Gaps = 16/259 (6%)

Query: 75  ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132
           I E++      +L+ N+  ++ +  +Q I      +  KI   ++     +        +
Sbjct: 7   IKEFKTYLIQQNLSKNTIDAYCTAVNQYI-----VNKDKIDKNNLLLWKANMIETFKART 61

Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192
               + ++     +         +  +              +     +  K    E    
Sbjct: 62  INLKIQAINNYLDFINLGHLKLKSVKVQQRLFLENVISDADYNFLKTKLKKEKNKE---W 118

Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD---GFMKLLAMTP 249
                FL  +G R S+  +  V+H+      I T+           +      + L    
Sbjct: 119 YFIVRFLAATGARVSELIKIKVEHVHLGYIDIYTKGGKIRRIYIPRNLRIEATEWLKKLN 178

Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHE 306
           +     F+N   + + A   S   K  A K  +N S    H  R   A    +       
Sbjct: 179 LESGYIFLNRYGKLITARGISQQLKNYAIKYKLNPSVVYPHSFRHRFAKNFLEKYNDISL 238

Query: 307 LMATYGWKTVDQAETYTKG 325
           L    G ++++    Y + 
Sbjct: 239 LADLMGHESIETTRIYLRK 257


>gi|317498603|ref|ZP_07956896.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894090|gb|EFV16279.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 396

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 107/344 (31%), Gaps = 43/344 (12%)

Query: 14  ERTRHGKIIYY----FRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66
           ++  +G   +     +    G++I   R  +  +      Y   +  ST +     + +K
Sbjct: 7   KKADNGTYYFRANLGYNPITGKQIQKYRSGFRTKKEAKEEYSKLVLASTEEL----TTKK 62

Query: 67  KPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125
              + +  I E Y        +  ++ ++  +   +        +  +I   H+++    
Sbjct: 63  DGVSFQQFIEETYLPWYK-TQVKESTYLNRATTIKKHFSYFYKMETDEIEPIHVQNWQLK 121

Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183
                +P+        + + F  A+       NP   +   K K   +  WT E+ Q+  
Sbjct: 122 LAKDFSPNYIRIVQGMLSIAFDRAIVLGIAKKNPSRMIGNIKSKKTKVDFWTLEEFQKVI 181

Query: 184 SFWSEGSQP--RLAFEFLLY--SGLRCSDSCRAGVQHL-----------------QNNIF 222
           S   +       L   F L   +G+R  ++       +                   +  
Sbjct: 182 SLLCKKDYYEHYLFISFWLLFMTGMRIGEASALHWSDIDFETGLLSITKTLYYRTMTDYK 241

Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN------DKQKMNATQFSIWFKAK 276
            ++ +   +I T+ +    +  L      ++    +       +    + T      +  
Sbjct: 242 FVEPKTQASIRTIYIDSDTLNELKAWQSVQQQVLPDCPLVLSYNGTPTSKTTLPRALEKL 301

Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319
           +  AGV++   H +R   A++    G     +    G + +   
Sbjct: 302 SNLAGVHRIKIHALRHSHASLLISMGENPLLIKERLGHEKIQTT 345


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.129    0.358 

Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,541,476,782
Number of Sequences: 13984884
Number of extensions: 111456942
Number of successful extensions: 624768
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 18292
Number of HSP's successfully gapped in prelim test: 6423
Number of HSP's that attempted gapping in prelim test: 569153
Number of HSP's gapped (non-prelim): 35084
length of query: 348
length of database: 4,792,584,752
effective HSP length: 140
effective length of query: 208
effective length of database: 2,834,700,992
effective search space: 589617806336
effective search space used: 589617806336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 81 (35.9 bits)